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QDD version3.1.2 July 2014
Emese Meglecz, Aix-Marseille University, Marseille, France
emese.meglecz@imbe.fr
http://net.imbe.fr/~emeglecz/qdd.html
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SCRIPT pipe1.pl
INPUT files:
	Input file with sequences: /home/qdd/galaxy-dist/database/files/000/dataset_236.dat

OUTPUT files:
String for naming output files: NA
	/home/qdd/galaxy-dist/database/files/000/dataset_238.dat : Fasta file with sequences ready for pipe2.pl (i) contain microsatellites (ii) longer than 80 after vector/adapter clipping OR after being extracted from contigs
	/home/qdd/galaxy-dist/database/files/000/dataset_241.dat : Info on mirosatellite number and position

GENERAL PARAMETERS
System (win/linux): linux
Input sequences are already assembled (contigs, scaffolds or chromosomes) (YES=1/NO=0): 1
Input file is a fastq file (YES=1/NO=0): 0
Length of the flanking region on both sides of the microsatellite: 200
Minimum sequence length: 80
Delete intermediate files (YES=1/NO=0): 1
Output folder : /home/qdd/galaxy-dist/tools/qdd/qdd_output/
Path to QDD executables: /home/qdd/galaxy-dist/tools/qdd/
Minimum homopolymer length for microsatellite detection: 1000000
Minimum repeat number for dibase motifs for microsatellite detection: 5
Minimum repeat number for tribase motifs for microsatellite detection: 5
Minimum repeat number for tetrabase motifs for microsatellite detection: 5
Minimum repeat number for pentabase motifs for microsatellite detection: 5
Minimum repeat number for hexabase motifs for microsatellite detection: 5
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88020 fragments are extracted from the input sequences


pipe1.pl started at : Fri Jul 18 18:03:56 2025
The run took 3585 s.
The analysis is finished