752613
IPA: Separate primary contigs from haplotigs for /home/ellen.kittler-umw/Sequel2_PacBio/r54328U_20250625_165337/1_A01/ccs_consensus-11/cromwell-executions/pb_ccs/f4452ec2-59d1-4ba5-8a45-6d9228eb49ff/call-consolidate_reads_bam/execution/cromwell_out/cromwell-executions/pb_assembly_hifi/72f6f9f6-fbef-4386-9550-bafcc33dccd8/call-polish_merge/execution/assembly.merged.fasta p_ctg.fasta a_ctg.fasta
+ local local_out_memtime=log.separate_p_from_a.falconc.memtime
+ shift
+ local 'fmt_str=cmd: %C\nreal_time: %e s\nuser_time: %U s\nsys_time: %S s\nmax_rss: %M kB\nexit_status: %x'
+ local use_gnu_time=0
+ [[ -x /usr/bin/time ]]
+ /usr/bin/time '--format=cmd: %C\nreal_time: %e s\nuser_time: %U s\nsys_time: %S s\nmax_rss: %M kB\nexit_status: %x' -o /dev/null true
+ use_gnu_time=1
+ [[ 1 -eq 1 ]]
+ /usr/bin/time '--format=cmd: %C\nreal_time: %e s\nuser_time: %U s\nsys_time: %S s\nmax_rss: %M kB\nexit_status: %x' -o log.separate_p_from_a.falconc.memtime falconc ipa-separate-p-from-a-with-fai --in_merged_fn=/home/ellen.kittler-umw/Sequel2_PacBio/r54328U_20250625_165337/1_A01/ccs_consensus-11/cromwell-executions/pb_ccs/f4452ec2-59d1-4ba5-8a45-6d9228eb49ff/call-consolidate_reads_bam/execution/cromwell_out/cromwell-executions/pb_assembly_hifi/72f6f9f6-fbef-4386-9550-bafcc33dccd8/call-polish_merge/execution/assembly.merged.fasta --out-p=p_ctg.fasta --out-a=a_ctg.fasta --in-p-fai-fn in.p.fasta.fai --in-a-fai-fn in.a.fasta.fai