GeneID Unigene RefSeq Ensembl name alias orf chromosome description type 93688 Mm.308735 NM_053105 ENSMUSG00000022076 Klhl1 mKIAA1490 - 14|14 E2.1 kelch-like 1 protein-coding 320907 Mm.474159 B430105G09Rik - - 1|1 C1.3 RIKEN cDNA B430105G09 gene protein-coding 100039655 Gm9745 - - 13|13 A1 isopentenyl-diphosphate delta isomerase 2 pseudogene pseudo 62374 D12Mit135 - - 12 2.29 cM DNA segment, Chr 12, Massachusetts Institute of Technology 135 unknown 246293 Mm.179871 NM_178741 ENSMUSG00000029312 Klhl8 2310001P09Rik|D5Ertd431e - 5 E5|5 50.45 cM kelch-like 8 protein-coding 67525 Mm.30653 NM_178110 ENSMUSG00000041000 Trim62 6330414G21Rik|AI450348|Dear1 - 4|4 D2.2 tripartite motif-containing 62 protein-coding 100034948 Si5lq4 - - 10 66.75 cM serum IGFBP-5 level QTL 4 unknown 403345 Mm.458820 BC037438 - - 11|11 cDNA sequence BC037438 unknown 434215 Mm.323057 NM_001113379 ENSMUSG00000090958 Lrrc32 AI426318|D11S833Eh|D7H11S833E|EG434215|Garp - 7 E1|7 53.86 cM leucine rich repeat containing 32 protein-coding 77451 9530022J15Rik - - 12|12 RIKEN cDNA 9530022J15 gene protein-coding 100861596 Gm21062 - - 17|17 predicted gene, 21062 pseudo 228592 Mm.452175 NM_177653 ENSMUSG00000043727 F830045P16Rik Sirpb3 - 2|2 F1 RIKEN cDNA F830045P16 gene protein-coding 70507 Mm.488098 5730411F24Rik - - 18|18 RIKEN cDNA 5730411F24 gene protein-coding 105242432 Gm38701 - - 16|16 predicted gene, 38701 protein-coding 102638890 XR_380189 Gm15270 - - 10|10 A4 predicted gene 15270 protein-coding 666723 XM_011245285 Gm8256 - - 14 C1|14 predicted gene 8256 protein-coding 102634757 XR_391444 Gm32263 - - 7 B4|7 predicted gene, 32263 ncRNA 66454 Mm.76062 NM_133435 ENSMUSG00000028992 Nmnat1 2610529L11Rik|5730441G13Rik|D4Cole1e|nmnat - 4|4 E2 nicotinamide nucleotide adenylyltransferase 1 protein-coding 100042018 Mm.226576 Gm3627 - - 4 D2.3|4 predicted gene 3627 protein-coding 18324 Mm.246531 NM_146783 ENSMUSG00000047667 Olfr26 MOR171-9|MTPCR09 - 9|9 A5.1 olfactory receptor 26 protein-coding 100316670 NR_130326 ENSMUSG00000080424 Mir466k Mirn466k|mmu-mir-466k - 3 F1|3 37.83 cM microRNA 466k ncRNA 19092 Mm.263002 NM_008926 ENSMUSG00000029334 Prkg2 AW212535|CGKII|Prkgr2|cGK-II - 5 E3|5 48.35 cM protein kinase, cGMP-dependent, type II protein-coding 229898 Mm.459245 NM_153564 ENSMUSG00000105504 Gbp5 5330409J06Rik|Gbp5a - 3|3 H1 guanylate binding protein 5 protein-coding 110875 Micrl - - - microwave induced increase in complement receptor B cells protein-coding 238276 Mm.311452 NM_001101471 ENSMUSG00000021057 Akap5 3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150 - 12|12 C3 A kinase (PRKA) anchor protein 5 protein-coding 27084 Mm.255790 NM_031493 ENSMUSG00000067764 Xlr5c Xlr5 - X A7.3|X 37.29 cM X-linked lymphocyte-regulated 5C protein-coding 60944 DXMit41 - - X 43.72 cM DNA segment, Chr X, Massachusetts Institute of Technology 41 unknown 52393 D7Ertd677e - - 7 76.31 cM DNA segment, Chr 7, ERATO Doi 677, expressed unknown 102638650 XR_377583 Gm35163 - - 6 B2.1|6 predicted gene, 35163 ncRNA 74477 Mm.289697 NM_028963 ENSMUSG00000020807 4933427D14Rik C85113|Kiaa0753|MNR - 11|11 B4 RIKEN cDNA 4933427D14 gene protein-coding 102632875 XR_376965 Gm30837 - - 5 C3.1|5 predicted gene, 30837 ncRNA 108434 Xmmv51 Xmmv-51|Xp-10 - - xenotropic-MCF leukemia virus 51 other 102632316 Gm21411 - - 4|4 predicted gene, 21411 ncRNA 11648 Mm.377076 NM_007432 ENSMUSG00000036500 Akp3 Akp-3|IAP|dIAP - 1 C5|1 44.06 cM alkaline phosphatase 3, intestine, not Mn requiring protein-coding 100417592 Gm18704 - - 10|10 A4 Smad nuclear interacting protein 1 pseudogene pseudo 100036544 D630002J18Rik - - - RIKEN cDNA D630002J18 gene protein-coding 62930 D10Mit271 - - 10 72.31 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 271 unknown 105243730 Gm39541 - - X|X predicted gene, 39541 ncRNA 236427 Mageb10-ps EG236427|Gm4901|Mageb10|mMage-b10 - X|X C1 melanoma antigen, family B, 10, pseudogene pseudo 85134 DXMit173 - - X 53.11 cM DNA segment, Chr X, Massachusetts Institute of Technology 173 unknown 15874 Mm.415 NM_010491 ENSMUSG00000041681 Iapp DAP - 6 G2|6 73.81 cM islet amyloid polypeptide protein-coding 668318 Gm9103 EG668318 - X|X D predicted gene 9103 pseudo 668556 Gm9240 EG668556 - 7|7 F2 src family associated phosphoprotein 2 pseudogene pseudo 100124288 Traj60 Gm17534 - 14|14 C2 T cell receptor alpha joining 60 pseudo 626391 Mm.385405 NM_001039231 ENSMUSG00000072774 Zfp951 C230055K05Rik|Gm38611 - 5|5 E5 zinc finger protein 951 protein-coding 61163 D13Mit55 - - 13 3.72 cM DNA segment, Chr 13, Massachusetts Institute of Technology 55 unknown 245305 Mm.148033 NM_001362093 B230307C23Rik 8030444G23Rik|EG245305 - 16|16 C4 RIKEN cDNA B230307C23 gene protein-coding 665021 Gm7451 EG665021 - 8|8 A1.1 serine/threonine kinase 38 like pseudogene pseudo 235132 Mm.239355 NM_172765 ENSMUSG00000047412 Zbtb44 6030404E16Rik|Btbd15|E230011F09 - 9|9 A4 zinc finger and BTB domain containing 44 protein-coding 319356 C530040J15Rik - - 6|6 RIKEN cDNA C530040J15 gene protein-coding 109830 Erp1 Erp-1 - - erythrocyte protein 1 protein-coding 665820 Gm7805 EG665820 - 17|17 A3.3 predicted gene 7805 pseudo 100049165 Mm.158124 Gm9857 - - 3|3 predicted gene 9857 unknown 100113450 Brml9 - - - bone response to mechanical loading 9 unknown 54201 Mm.6666 NM_017467 ENSMUSG00000046658 Zfp316 Emzf1|Mzf3|Znf316 - 5|5 G2 zinc finger protein 316 protein-coding 102467556 n-TLcag8 n-Tl20 - 1 H3|1 nuclear encoded tRNA leucine 8 (anticodon CAG) tRNA 100035167 Pbmd3 - - 4 74.75 cM peak bone mineral density 3 unknown 102639662 XR_380589 Gm35920 - - 10 C1|10 predicted gene, 35920 ncRNA 629871 Ighv1-18 Gm16856 - 12|12 F2 immunoglobulin heavy variable V1-18 other 665717 Gm7756 - - 13 B2|13 predicted gene 7756 pseudo 20873 Mm.3794 NM_011495 ENSMUSG00000025758 Plk4 1700028H20|AI385771|Sak|Stk18 - 3|3 B polo like kinase 4 protein-coding 109254 Mm.25195 NM_175417 ENSMUSG00000058022 Adtrp 9530008L14Rik - 13|13 A4 androgen dependent TFPI regulating protein protein-coding 62396 D17Mit62 - - 17 17.98 cM DNA segment, Chr 17, Massachusetts Institute of Technology 62 unknown 28275 D10Jhu69 - - - DNA segment, Chr 10, Johns Hopkins University 69 unknown 216971 Mm.119387 NM_145430 ENSMUSG00000037750 Fam222b 9630020I17Rik - 11|11 B5 family with sequence similarity 222, member B protein-coding 116980 Morph4 - - - morphine antinociception 4 unknown 102639521 Mm.331004 XR_375612 Gm29230 - - 3 C|3 predicted gene 29230 ncRNA 102636263 XR_380699 Gm33377 - - 10 C2|10 predicted gene, 33377 ncRNA 105246618 XR_877994 Gm41885 - - 19 D3|19 predicted gene, 41885 protein-coding 102634252 XR_391440 Gm31882 - - 7 B3|7 predicted gene, 31882 ncRNA 381399 Mm.315572 NM_001034875 ENSMUSG00000074665 Bpifb4 Gm1006|Lplunc4 - 2|2 H1 BPI fold containing family B, member 4 protein-coding 105246773 XR_878716 Gm42012 - - 5 F|5 predicted gene, 42012 ncRNA 11763 ap - - - alopecia periodica unknown 100417662 Zcchc9-ps Gm14080 - 2|2 F3 zinc finger, CCHC domain containing 9, pseudogene pseudo 110289 Tcm - - - total cataract with microphthalmia unknown 107843 Trex2c - - - Tcr1 region expressed 2, D17Leh66c region protein-coding 102634912 XR_389025 Gm32385 - - 11 D|11 predicted gene, 32385 ncRNA 105244588 XR_867758 Gm40179 - - 3 H3|3 predicted gene, 40179 ncRNA 100101415 Pbwg1.3 - - - postnatal body weight growth 1.3 unknown 27834 D2Dcr24 - - - DNA segment, Chr 2, Derry C. Roopenian 24 unknown 100415984 Gm17854 - - X|X A1.1 predicted gene, 17854 pseudo 16073 Igk-J - - - immunoglobulin kappa chain, joining region other 239691 Mm.325639 NM_001033220 ENSMUSG00000051669 AU021092 - - 16|16 A1 expressed sequence AU021092 protein-coding 114763 Mm.491064 NR_001462 G6bos G6b|NG31 - 17 B1|17 18.59 cM G6b opposite strand ncRNA 69413 Mm.177847 NR_038149 ENSMUSG00000101894 1700016P04Rik - - 6|6 A1 RIKEN cDNA 1700016P04 gene ncRNA 105246103 XR_876032 Gm41446 - - 16 B3|16 predicted gene, 41446 ncRNA 105245356 Mm.364180 XR_873148 Gm40826 - - 13 A2|13 predicted gene, 40826 ncRNA 102009 Mm.458506 AI195381 - - - expressed sequence AI195381 unknown 102836 Mm.402292 BB236558 - - - expressed sequence BB236558 protein-coding 105245446 XR_873082 Gm40900 - - 12 F2|12 predicted gene, 40900 ncRNA 72123 Mm.341352 NM_028111 ENSMUSG00000090946 Ccdc71l 2010109K11Rik|AV375874 - 12|12 A3 coiled-coil domain containing 71 like protein-coding 100861659 Gm21111 - - Y|Y predicted gene, 21111 protein-coding 102632646 XR_384651 Gm30668 - - 16 A1|16 predicted gene, 30668 ncRNA 434223 Mm.276443 NM_001277179 Gm1966 - - 7|7 E3 predicted gene 1966 protein-coding 57753 Mm.86482 NM_021315 ENSMUSG00000024999 Noc3l AF233884|Fad24 - 19|19 C3 NOC3 like DNA replication regulator protein-coding 52786 D10Bwg0812e - - - DNA segment, Chr 10, Brigham & Women's Genetics 0812 expressed unknown 258518 Mm.271431 NM_146525 ENSMUSG00000059821 Olfr847 MOR149-2 - 9|9 A2 olfactory receptor 847 protein-coding 100417560 Gm18688 - - 6|6 F3 ring finger and WD repeat domain 2 pseudogene pseudo 666264 Gm8011 EG666264 - 14 B|14 predicted gene 8011 ncRNA 664870 Gm7381 EG664870 - 8|8 A1.1 Wilms' tumour 1-associating protein pseudogene pseudo 108535 Ms13-36 Ms13-Hf20 - - minisatellite 13-36 detected by M13 phage probe other 102636424 Mm.244164 XR_382280 Gm33489 - - 13 A4|13 predicted gene, 33489 ncRNA 100041194 Mm.313169 NM_001033476 Ahnak2 AI450948|Gm1185|Gm72 - 12|12 F1 AHNAK nucleoprotein 2 protein-coding 71131 Mm.474533 NM_175163 ENSMUSG00000048921 Zfp689 4933416E05Rik|Znf689 - 7|7 F3 zinc finger protein 689 protein-coding 70503 Mm.252862 NM_027442 ENSMUSG00000063428 Ddo 5330420D20Rik|5730402C02Rik|AI467244 - 10|10 B1 D-aspartate oxidase protein-coding 102637673 Mm.404364 XR_379518 ENSMUSG00000111381 Gm34424 - - 9 B|9 predicted gene, 34424 ncRNA 214951 Mm.490018 NM_144816 ENSMUSG00000025735 Rhbdl1 Rhbdl - 17 A3.3|17 12.93 cM rhomboid like 1 protein-coding 79199 Naip3l1 Birc1cl - - NLR family, apoptosis inhibitory protein 3-like 1 protein-coding 108167675 XR_001779261 Gm46125 - - 9 E3.3|9 predicted gene, 46125 ncRNA 102465756 NR_106105 ENSMUSG00000098951 Mir7647 Gm27347|mmu-mir-7647 - 5|5 F microRNA 7647 ncRNA 108627 Iap5rc14 - - - intracisternal A-type particle, U5 region, SINE repeat c-14 other 195646 Mm.247449 NM_177575 ENSMUSG00000046321 Hs3st2 6430516N12Rik|A830061E14Rik|AW491345 - 7 F2|7 65.07 cM heparan sulfate (glucosamine) 3-O-sulfotransferase 2 protein-coding 28181 D16Ium28e D16Ium28 - - DNA segment, Chr 16, Indiana University Medical 28, expressed unknown 320022 Mm.249775 NM_180958 ENSMUSG00000052616 Terb1 4930532D21Rik|BB085179|Ccdc79 - 8|8 D3 telomere repeat binding bouquet formation protein 1 protein-coding 68001 Mm.45374 NM_026502 ENSMUSG00000022972 1110004E09Rik - - 16|16 C3.3 RIKEN cDNA 1110004E09 gene protein-coding 666331 Mm.303457 NM_001256318 LOC666331 - - 11|11 D uncharacterized LOC666331 protein-coding 208151 Mm.40397 NM_001190352 ENSMUSG00000070498 Tmem132b AK220418|mKIAA1786 - 5|5 G1.1 transmembrane protein 132B protein-coding 108089 Mm.214932 NM_080563 ENSMUSG00000020642 Rnf144a Rnf144|UIP4|Ubce7ip4 - 12|12 A2 ring finger protein 144A protein-coding 258257 Mm.377396 NM_207150 ENSMUSG00000074946 Olfr1313 MOR245-23 - 2|2 E3 olfactory receptor 1313 protein-coding 102633681 XR_387069 Gm14991 - - X F1|X 58.63 cM predicted gene 14991 ncRNA 108168569 XM_017318772 LOC108168569 - - Y C2 Y-linked testis-specific protein 1-like protein-coding 546912 Mm.469876 NM_001104635 ENSMUSG00000093820 Vmn2r21 EG546912 - 6|6 F2 vomeronasal 2, receptor 21 protein-coding 58520 Mm.143795 NM_021446 ENSMUSG00000021252 Erg28 0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11 - 12|12 D2 ergosterol biosynthesis 28 protein-coding 102640371 Gm13837 - - 5|5 56.26 cM predicted gene 13837 ncRNA 77618 Mm.390780 XR_383849 C030047K22Rik - - 15|15 A2 RIKEN cDNA C030047K22 gene ncRNA 100040276 Mm.475095 NM_001126322 ENSMUSG00000078668 Gm11595 - - 11|11 D predicted gene 11595 protein-coding 317652 Mm.389896 NM_174865 ENSMUSG00000055193 Klk15 - - 7 B3|7 28.41 cM kallikrein related-peptidase 15 protein-coding 102635351 Gm32713 - - 9|9 predicted gene, 32713 ncRNA 110680 Top1-rs1 - - - topoisomerase (DNA) I, related sequence 1 protein-coding 100503783 Mm.102390 NR_132436 ENSMUSG00000097486 Gm17733 - - 6 E3|6 53.19 cM predicted gene, 17733 ncRNA 619329 XM_011246779 F420015M19Rik - - 17|17 E3 RIKEN cDNA F420015M19 gene protein-coding 638695 Mm.453699 NM_001039250 Gm7247 EG638695 - 14 C1|14 predicted gene 7247 protein-coding 61965 D8Mit297 - - 8 25.61 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 297 unknown 72994 2900046H12Rik - - 18|18 RIKEN cDNA 2900046H12 gene protein-coding 232174 Mm.255246 NM_175475 ENSMUSG00000063415 Cyp26b1 CP26|P450RAI-2 - 6|6 C3 cytochrome P450, family 26, subfamily b, polypeptide 1 protein-coding 62406 D16Mit180 - - 16 2.45 cM DNA segment, Chr 16, Massachusetts Institute of Technology 180 unknown 217666 Mm.103362 NM_145443 ENSMUSG00000020988 L2hgdh BC016226 - 12|12 C2 L-2-hydroxyglutarate dehydrogenase protein-coding 330188 Mm.386907 NM_183307 ENSMUSG00000043036 Ccdc63 4921511C16Rik - 5|5 F coiled-coil domain containing 63 protein-coding 97726 C80165 - - - expressed sequence C80165 unknown 102657 Mm.5356 NM_133983 ENSMUSG00000035914 Cd276 6030411F23Rik|AU016588|B7RP-2|B7h3 - 9|9 B CD276 antigen protein-coding 241732 Mm.277243 NM_198617 ENSMUSG00000074671 Tspyl3 AW212607|Gm36 - 2|2 H1 TSPY-like 3 protein-coding 102637726 XR_878227 Gm34464 - - X D|X predicted gene, 34464 ncRNA 228026 Mm.34411 NM_172665 ENSMUSG00000006494 Pdk1 B830012B01|D530020C15Rik - 2|2 C3 pyruvate dehydrogenase kinase, isoenzyme 1 protein-coding 328747 Mm.256835 NR_046164 ENSMUSG00000097624 Gm5091 C330048F19 - 17 A2|17 predicted gene 5091 ncRNA 211151 Mm.80970 NM_206534 ENSMUSG00000090258 Churc1 1700030P15Rik|My015|chch - 12|12 C3 churchill domain containing 1 protein-coding 112144 Afw3 - - - abdominal fat weight QTL 3 unknown 667542 Trav12d-3 Gm10890 - 14 C2|14 T cell receptor alpha variable 12D-3 other 434050 Gm5576 EG434050 - 6|6 C3 predicted pseudogene 5576 pseudo 105245324 XR_872170 Gm40799 - - 10 D3|10 predicted gene, 40799 ncRNA 71373 Mm.63546 NM_001081224 ENSMUSG00000073565 Prr16 5430406M13Rik|AI607429 - 18|18 D1 proline rich 16 protein-coding 100034774 Tshp15 QTL-TSH15.1 - - tooth shape 15 unknown 112210 Tlsm1 - - 7 81.27 cM thymic lymphoma susceptible 1 unknown 666488 Gm15294 EG666488 - X F2|X glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102466642 NR_105816 ENSMUSG00000098882 Mir6392 Gm27431|mmu-mir-6392 - 15|15 E2 microRNA 6392 ncRNA 359881 DXMgc36 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 36 unknown 76121 Mm.159684 5830485P09Rik - - 10|10 RIKEN cDNA 5830485P09 gene protein-coding 75799 Mm.78557 NM_001243238 ENSMUSG00000067795 4930444P10Rik - - 1|1 A3 RIKEN cDNA 4930444P10 gene protein-coding 140497 Mm.2699 NM_134158 ENSMUSG00000044811 Cd300c2 CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II - 11 E2|11 80.57 cM CD300C molecule 2 protein-coding 780960 Ighv8-12 Gm10885 - 12|12 F2 immunoglobulin heavy variable V8-12 other 620736 XM_017312483 ENSMUSG00000096283 Gm6176 EG620736 - 7|7 A3 predicted gene 6176 protein-coding 67636 Mm.486359 NM_133688 ENSMUSG00000040370 Etfrf1 4930469P12Rik|AL022899|Ghiso|Lyrm5 - 6 G3|6 77.37 cM electron transfer flavoprotein regulatory factor 1 protein-coding 75219 Mm.32588 NM_173745 ENSMUSG00000047205 Dusp18 4930527G07Rik|AI430870|BB028064|DSP18|DUSP20|LMWDSP20 - 11|11 A1 dual specificity phosphatase 18 protein-coding 105244675 XR_868089 Gm40239 - - 4 D2.2|4 predicted gene, 40239 ncRNA 29828 Del(X)17Brd - - - deletion, Chr X, Bradley 17 other 100035705 Char2b - - - P. chabaudi malaria resistance QTL 2b unknown 112220 Wt10q2 - - - body weight, 10 weeks, QTL 2 unknown 100534321 Gm21930 - - 13|13 B3 predicted gene, 21930 pseudo 631868 Gm7074 EG631868 - 19 A|19 RNA polymerase II associated protein 2 pseudogene pseudo 445264 Dnmt3l-ps1 - - 2|2 D DNA methyltransferase 3-like, pseudogene 1 pseudo 11754 Mm.67281 NM_009675 ENSMUSG00000019326 Aoc3 SSAO|VAP1 - 11|11 D amine oxidase, copper containing 3 protein-coding 110120505 LOC110120505 - - - VISTA enhancer mm1493 biological-region 667735 Gm15529 EG667735 - 6 A1|6 HORMA domain containing 1 pseudogene pseudo 100534356 Gm21040 - - 5|5 A1 predicted gene, 21040 pseudo 380629 Mm.276430 NM_001033432 ENSMUSG00000039879 Heca Gm869|HDC|HDCL - 10|10 A3 hdc homolog, cell cycle regulator protein-coding 68259 Mm.389451 NM_026641 ENSMUSG00000027778 Ift80 4921524P20Rik|Wdr56|mKIAA1374 - 3|3 E1 intraflagellar transport 80 protein-coding 100416043 Gm17888 - - X|X D WASP family 1 pseudogene pseudo 100042615 Gm3931 - - X|X D predicted gene 3931 pseudo 105245486 XR_873354 Gm40934 - - 13 A5|13 predicted gene, 40934 ncRNA 102631846 XR_381747 Gm30076 - - 12 C3|12 predicted gene, 30076 ncRNA 105247163 XR_881402 Gm42312 - - 4 C4|4 predicted gene, 42312 ncRNA 102633267 Gm31133 - - 15|15 predicted gene, 31133 ncRNA 102467386 n-TTagt6 n-Tt6 - 13 A3.1|13 nuclear encoded tRNA threonine 6 (anticodon AGT) tRNA 77770 A930008L05Rik - - 5|5 RIKEN cDNA A930008L05 gene protein-coding 13603 Mm.32744 NM_010098 ENSMUSG00000026525 Opn3 ERO|Ecpn - 1|1 H3 opsin 3 protein-coding 100862268 Mm.444603 NR_105029 ENSMUSG00000097456 LOC100862268 - - 3 G2 uncharacterized LOC100862268 ncRNA 104099 Mm.335520 NM_133721 ENSMUSG00000039115 Itga9 (alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e - 9 F3|9 70.32 cM integrin alpha 9 protein-coding 105246130 XR_876146 Gm41469 - - 16 C1.3|16 predicted gene, 41469 ncRNA 102642986 XR_865802 Gm38648 - - 1 H5|1 predicted gene, 38648 ncRNA 627626 Mm.390999 NM_028474 ENSMUSG00000042256 Ptchd4 3110082D06Rik|Gm321 - 17|17 B3 patched domain containing 4 protein-coding 100039540 Gm13602 - - 2|2 C1.3 predicted gene 13602 pseudo 52741 D6Wsu1e - - - DNA segment, Chr 6, Wayne State University-1, expressed unknown 100042585 Gm20930 - - Y|Y predicted gene, 20930 protein-coding 102637033 XR_385800 Gm33944 - - 17 E3|17 predicted gene, 33944 ncRNA 102635768 XR_383116 Gm33022 - - 14 A2|14 predicted gene, 33022 ncRNA 105244520 Gm40114 - - 3|3 predicted gene, 40114 ncRNA 102634503 XR_378143 Gm32069 - - 6 G3|6 predicted gene, 32069 ncRNA 238405 Mm.442216 NM_001009545 ENSMUSG00000051804 Adam6b 4930523C11Rik - 12|12 F1 a disintegrin and metallopeptidase domain 6B protein-coding 493062 Ksc1 - - 9 42.3 cM keratinocyte stem cell locus 1 unknown 62460 D14Mit262 - - - DNA Segment, Chr 14 Massachusetts Institute of Technology 262 unknown 102639220 Gm17430 - - 18 A1|18 4.91 cM predicted gene, 17430 pseudo 102638099 XR_881875 Gm34744 - - 7 A3|7 predicted gene, 34744 ncRNA 100416730 Gm15382 - - 15|15 E3 RAS related protein 1b pseudogene pseudo 102635095 XR_375786 Gm32518 - - 3 F1|3 predicted gene, 32518 ncRNA 101056072 XR_879336 Gm29773 Gm45891 - 8 E2|8 predicted gene, 29773 ncRNA 546729 Mm.439624 NM_001081271 ENSMUSG00000079258 Calhm1 EG546729 - 19|19 C3 calcium homeostasis modulator 1 protein-coding 105245103 Gm20470 - - 10|10 2.33 cM predicted gene 20470 ncRNA 67081 Mm.72644 NR_040578 ENSMUSG00000100558 1700025F24Rik - - 10|10 D2 RIKEN cDNA 1700025F24 gene ncRNA 69293 Mm.456372 1700001C07Rik - - 17|17 RIKEN cDNA 1700001C07 gene protein-coding 102633717 Gm31476 - - 2|2 predicted gene, 31476 ncRNA 100416076 Gm17907 - - 7|7 B5 peroxiredoxin 3 pseudogene pseudo 629930 Ighv8-6 EG629930|Gm7018 - 12|12 F2 immunoglobulin heavy variable V8-6 other 78267 Mm.283194 NM_030075 ENSMUSG00000032609 Klhdc8b 4931406O17Rik - 9|9 F2 kelch domain containing 8B protein-coding 100042914 Gm4105 - - 7|7 F2 general transcription factor II H, polypeptide 1 pseudogene pseudo 105244437 XR_867250 Gm40044 - - 3 C|3 predicted gene, 40044 ncRNA 73961 Mm.390702 NR_045959 ENSMUSG00000115609 4930447J18Rik 4930425M13Rik - 14|14 C1 RIKEN cDNA 4930447J18 gene ncRNA 625597 Gm6606 EG625597 - 1|1 H4 degenerative spermatocyte homolog 1 pseudogene pseudo 329557 Mm.118769 NM_173377 ENSMUSG00000050383 Svs3b 9530004A22Rik - 2|2 H3 seminal vesicle secretory protein 3B protein-coding 78593 Mm.275374 NM_020610 ENSMUSG00000034825 Nrip3 A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2 - 7|7 E3 nuclear receptor interacting protein 3 protein-coding 664958 Gm14527 - - X A3.1|X Xlr-related, meiosis regulated (Xmr) pseudogene pseudo 241118 Mm.110790 NM_183022 ENSMUSG00000033007 Asic4 Accn4|BNAC4 - 1|1 C4 acid-sensing (proton-gated) ion channel family member 4 protein-coding 17742 TrnS1 - - - tRNA tRNA 114573 Mm.439122 Drld - - - differentially regulated in lymphoid organs and differentiation protein-coding 102634033 Gm31717 - - 8|8 predicted gene, 31717 ncRNA 70527 Mm.32801 NM_024239 ENSMUSG00000006906 Stambp 5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198 - 6|6 C3 STAM binding protein protein-coding 11615 Mm.330692 NM_001304528 ENSMUSG00000048087 Gm4737 AL024110|EG11615 - 16 B5|16 predicted gene 4737 protein-coding 106258 Mm.441704 AI790442 AW546233 - - expressed sequence AI790442 protein-coding 100039241 Gm12134 - - 11|11 A5 predicted gene 12134 protein-coding 62526 D11Mit143 - - 11 35.4 cM DNA segment, Chr 11, Massachusetts Institute of Technology 143 unknown 102633772 XR_879233 Gm31519 - - 8 E1|8 predicted gene, 31519 ncRNA 52632 D11Ertd540e - - 11 15.63 cM DNA segment, Chr 11, ERATO Doi 540, expressed unknown 75207 4930533L02Rik - - 7|7 F3 RIKEN cDNA 4930533L02 gene ncRNA 73239 Mm.158971 3110054G05Rik - - 6|6 B1 RIKEN cDNA 3110054G05 gene protein-coding 51834 D2Ggc2e - - - DNA segment, Chr 2, G. Consalez 2, expressed unknown 100041748 Mm.309092 Gm10291 - - 3|3 E3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102632957 Mm.98531 XR_378815 9130214F15Rik Gm44642 - 8|8 A2 RIKEN cDNA 9130214F15 gene ncRNA 100503353 Mm.455970 NM_001199308 ENSMUSG00000078901 Gm14440 - - 2|2 H4 predicted gene 14440 protein-coding 100418477 Gm19235 - - 15|15 B3.2 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene pseudo 99214 AU022121 - - - expressed sequence AU022121 unknown 114260 Manz5 QTL-C7.1 - 7 1.91 cM mandible size 5 unknown 61203 D1Mit135 - - 1 49.45 cM DNA segment, Chr 1, Massachusetts Institute of Technology 135 unknown 67367 Mm.347 NM_026110 ENSMUSG00000022974 Paxbp1 1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp - 16|16 C3.3 PAX3 and PAX7 binding protein 1 protein-coding 19897 NM_001134869 Gm10275 - - 10|10 A4 Rpl12 pseudogene pseudo 85182 D16Mit69 - - 16 49.47 cM DNA segment, Chr 16, Massachusetts Institute of Technology 69 unknown 665343 Gm11983 - - 11|11 A1 predicted gene 11983 pseudo 108161 Mm.41991 NM_138746 ENSMUSG00000038246 Fam50b D0H6S2654E|X5L|XAP-5-like - 13|13 A3.3 family with sequence similarity 50, member B protein-coding 100502862 Gm14710 - - X A7.3|X 38.3 cM predicted gene 14710 pseudo 227746 Mm.158705 NM_145522 ENSMUSG00000070953 Rabepk 8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40 - 2|2 B Rab9 effector protein with kelch motifs protein-coding 100035806 Bmd20 - - 6 32.56 cM bone mineral density 20 unknown 74490 Mm.107442 NM_172418 ENSMUSG00000042918 Mamstr 2810022D01Rik|5430432N15Rik|AW743872|Mastr - 7|7 B3 MEF2 activating motif and SAP domain containing transcriptional regulator protein-coding 110121 Serpina3kr Spi-2r|Spi2r - - serine (or cysteine) peptidase inhibitor, clade A, member 3K regulator protein-coding 18577 Mm.191749 NM_019798 ENSMUSG00000032177 Pde4a D9Ertd60e|Dpde2 - 9 A3|9 7.73 cM phosphodiesterase 4A, cAMP specific protein-coding 100043332 Mm.17626 NM_001254953 ENSMUSG00000096140 Ankrd66 AU041848|D730048J04Rik|Gm4368 - 17 B3|17 ankyrin repeat domain 66 protein-coding 100039925 Gm2497 - - 9|9 E3.1 predicted gene 2497 pseudo 62114 D12Mit77 - - 12 49.89 cM DNA segment, Chr 12, Massachusetts Institute of Technology 77 unknown 102632476 LOC102632476 - - 10 C1 40S ribosomal protein S21 pseudogene pseudo 100038700 Mm.387624 XR_866106 Gm14488 - - 2 B|2 predicted gene 14488 unknown 102634865 XR_381784 Gm32348 - - 12 D2|12 predicted gene, 32348 ncRNA 382073 Mm.259573 NM_201372 ENSMUSG00000043923 Ccdc84 D630044F24Rik|Gm1114 - 9|9 A5.2 coiled-coil domain containing 84 protein-coding 384059 Mm.331901 NM_205823 ENSMUSG00000062545 Tlr12 Gm1365|Tlr11 - 4|4 D2.2 toll-like receptor 12 protein-coding 62848 D12Mit207 - - 12 57.6 cM DNA segment, Chr 12, Massachusetts Institute of Technology 207 unknown 108167710 Gm29454 - - 1 E2.3|1 40S ribosomal protein S15a pseudogene pseudo 258705 Mm.377645 NM_146710 ENSMUSG00000049041 Olfr398 MOR157-1 - 11|11 B4 olfactory receptor 398 protein-coding 67991 Mm.131074 NM_026495 ENSMUSG00000026932 Nacc2 0610020I02Rik|AI448087|Btbd14a|C030048H19Rik - 2|2 A3 nucleus accumbens associated 2, BEN and BTB (POZ) domain containing protein-coding 100047086 Nalp1b - - - nucleotide oligomerization protein-like receptor protein-coding 110694 Prkch-rs1 Pkch-rs1 - - protein kinase C, eta, related sequence 1 protein-coding 102636865 Gm33818 - - 1 G1|1 predicted gene, 33818 pseudo 359973 DXMgc110 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 110 unknown 20890 Mm.558 NM_009290 ENSMUSG00000012282 Wnt8a Stra11|Wnt-8A|Wnt-8D|Wnt8d - 18|18 B1 wingless-type MMTV integration site family, member 8A protein-coding 108167889 XR_001780167 Gm46274 - - 11 A3.2|11 predicted gene, 46274 ncRNA 258474 Mm.377521 NM_146481 ENSMUSG00000096409 Olfr890 MOR162-3 - 9|9 A5.1 olfactory receptor 890 protein-coding 666790 Gm8290 EG666790 - 10|10 C1 predicted gene 8290 pseudo 666183 Gm7968 EG666183 - 15|15 B3.1 predicted gene 7968 unknown 18185 Mm.20422 NM_008736 ENSMUSG00000040632 Nrl D14H14S46E - 14 C3|14 28.19 cM neural retina leucine zipper gene protein-coding 100042295 Mm.197422 NM_001243092 ENSMUSG00000111709 Gm3776 - - 9 E1|9 predicted gene 3776 protein-coding 319239 Mm.130824 NM_175678 ENSMUSG00000043659 Npsr1 9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1 - 9|9 A3-A4 neuropeptide S receptor 1 protein-coding 75657 Mm.374273 NM_029376 ENSMUSG00000073119 Speer4a 1700027N01Rik|SPEER-4A - 5|5 B1 spermatogenesis associated glutamate (E)-rich protein 4A protein-coding 102635695 Gm32967 - - 8|8 predicted gene, 32967 ncRNA 654818 Mm.386899 NM_001039558 ENSMUSG00000043298 Smco3 C030030A07Rik - 6|6 G1 single-pass membrane protein with coiled-coil domains 3 protein-coding 383348 Mm.76366 NM_026135 ENSMUSG00000051401 Kctd16 4930434H12Rik|Gm1267 - 18|18 B3 potassium channel tetramerisation domain containing 16 protein-coding 196594 Bomd3 - - 2 47.93 cM bone mineral density 3 unknown 100503876 Mm.484160 Gm19939 - - 18 D1|18 27.99 cM predicted gene, 19939 unknown 100040667 Gm2895 - - 15|15 D2 predicted gene 2895 ncRNA 107721 Evi30 - - - ecotropic viral integration site 30 protein-coding 19544 Rb(4.12)9Bnr Rb9Bnr - - Robertsonian translocation, Chr 4 and 12, Universitat Bonn/Rhein 9 other 100416312 Gm18030 - - 12|12 C2 ribosomal protein S2 pseudogene pseudo 102639502 XR_373463 Gm35803 - - 1 C2|1 predicted gene, 35803 ncRNA 626970 NM_001310615 ENSMUSG00000099900 Scgb2b21 Abpbg21|EG626970|Gm6725 - 7|7 B1 secretoglobin, family 2B, member 21 protein-coding 67706 Mm.45155 NM_026325 ENSMUSG00000003680 Tmem179b 0610031L02Rik|1500003K22Rik|1810059G22Rik - 19|19 A transmembrane protein 179B protein-coding 54194 Mm.281005 NM_017476 ENSMUSG00000002625 Akap8l HAP95|Nakap95 - 17|17 B1 A kinase (PRKA) anchor protein 8-like protein-coding 380855 Mm.284988 NM_001013769 ENSMUSG00000058900 Rsl1 rslcan-9 - 13 B3|13 34.54 cM regulator of sex limited protein 1 protein-coding 503610 Mm.331948 NM_001017968 ENSMUSG00000037553 Zdhhc18 - - 4|4 D2.3 zinc finger, DHHC domain containing 18 protein-coding 100043033 Mm.482060 NM_001167149 ENSMUSG00000096304 Gm16451 EG667454|Vmn1r140 - 7|7 A3 predicted pseudogene 16451 protein-coding 723935 NR_029882 ENSMUSG00000098838 Mir381 Mirn381|mir-381|mmu-mir-381 - 12 F1|12 microRNA 381 ncRNA 93725 Mm.429087 NM_053112 ENSMUSG00000090166 Ear10 Raf2 - 14|14 C1 eosinophil-associated, ribonuclease A family, member 10 protein-coding 102634958 Gm32416 - - 3 B|3 predicted gene, 32416 pseudo 105246126 XR_876127 Gm41466 - - 16 C1.3|16 predicted gene, 41466 ncRNA 100126431 Trgj1 Gm17003 - 13|13 A2 T cell receptor gamma joining 1 other 11730 Mm.24663 NM_001123394 Ang3 Angl|Ef-5|Rnase5c - 14|14 C1 angiogenin, ribonuclease A family, member 3 protein-coding 102637956 Mm.417014 XR_382148 ENSMUSG00000113352 Gm34639 - - 13 A3.1|13 predicted gene, 34639 ncRNA 105247411 Mm.172411 LOC105247411 - - - uncharacterized LOC105247411 ncRNA 13319 Del(7)49H Del49H - - deletion, Chr 7, Harwell 49 other 110789 Mm.288694 NM_054053 ENSMUSG00000069170 Adgrv1 Frings|Gpr98|Mass1|Mgr1|VLGR1 - 13 C3|13 42.18 cM adhesion G protein-coupled receptor V1 protein-coding 105243351 Gm39298 - - 9|9 predicted gene, 39298 ncRNA 77305 Mm.265125 NM_029896 ENSMUSG00000020257 Wdr82 9430077D24Rik|CDW5/WDR82 - 9|9 F1 WD repeat domain containing 82 protein-coding 102637453 Gm34257 - - 1|1 predicted gene, 34257 ncRNA 100217448 Mm.453533 NR_028545 ENSMUSG00000088958 Scarna8 MBI-57 - 4 C4|4 small Cajal body-specific RNA 8 ncRNA 385120 Mm.389777 Igkv4-70 BH151|Gm1502|kn4 - 6|6 C1 immunoglobulin kappa chain variable 4-70 other 105242595 XR_868786 LOC105242595 - - 6 A1 uncharacterized LOC105242595 ncRNA 209239 Mm.132992 NM_001081151 ENSMUSG00000052557 Gan A330045G18|gigaxonin - 8|8 E1 giant axonal neuropathy protein-coding 107692 Tcrg-V1.1 - - - T cell receptor gamma, variable 1.1 other 52382 D8Ertd674e - - 8 34.43 cM DNA segment, Chr 8, ERATO Doi 674, expressed unknown 105245815 XR_874813 Gm41205 - - 14 D2|14 predicted gene, 41205 ncRNA 110718 Zfp82-rs1 - - - zinc finger protein 82, related sequence 1 protein-coding 108274 Eif4a-ps6 - - - eukaryotic translation initiation factor 4A, pseudogene 6 pseudo 67238 Mm.383219 NM_026050 ENSMUSG00000083012 Fam220a 1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar - 5|5 G2 family with sequence similarity 220, member A protein-coding 107966122 LOC107966122 D6 - - D6 enhancer downstream of Sox10 biological-region 100861947 Gm13123 - - 4|4 77.98 cM predicted gene 13123 protein-coding 67207 Mm.30198 NM_026032 ENSMUSG00000037296 Lsm1 2810025O06Rik|CASM - 8|8 A2 LSM1 homolog, mRNA degradation associated protein-coding 16623 Mm.447819 NM_010645 ENSMUSG00000063133 Klk1b1 Klk1|mGK-1|mK1 - 7 B3|7 28.44 cM kallikrein 1-related peptidase b1 protein-coding 100417758 Gm17222 - - 14|14 A1 esterase D/formylglutathione hydrolase pseudogene pseudo 70230 Mm.458356 NR_126426 ENSMUSG00000107585 3300002P13Rik - - 7 A1|7 RIKEN cDNA 3300002P13 gene ncRNA 101637 AI616248 - - - expressed sequence AI616248 unknown 105244027 XR_865781 Gm39714 - - 1 H4|1 predicted gene, 39714 ncRNA 27410 Mm.239470 NM_013855 ENSMUSG00000024130 Abca3 1810036E22Rik|ABC-C|Abc3 - 17|17 A3.3 ATP-binding cassette, sub-family A (ABC1), member 3 protein-coding 74035 Mm.275803 NM_028727 ENSMUSG00000028948 Nol9 4632412I24Rik|6030462G04Rik|AI449622|AW490720 - 4|4 E2 nucleolar protein 9 protein-coding 100035701 Dbsq8 - - - diabetes susceptibility QTL 8 unknown 62045 D9Mit355 - - 9 51.41 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 355 unknown 100036225 Capsq4 - - - capsaicin sensitivity related QTL 4 unknown 111429 Mtv52 Mtv-4.8|Mtv-52 - - mammary tumor virus locus 52 other 69460 Mm.389464 NR_036591 ENSMUSG00000101334 1700028M03Rik - - 3|3 E3 RIKEN cDNA 1700028M03 gene ncRNA 107939 Mm.28399 NM_148932 ENSMUSG00000053293 Pom121 2610027A18Rik|C80273|mKIAA0618 - 5|5 G2 nuclear pore membrane protein 121 protein-coding 243862 Mm.389833 NM_001004152 ENSMUSG00000044903 Psg22 AA408604|cea9 - 7|7 A3 pregnancy-specific glycoprotein 22 protein-coding 102631510 Gm29830 - - 4|4 predicted gene, 29830 pseudo 105246063 Gm41413 - - 16|16 predicted gene, 41413 ncRNA 107555 Tel19q - - - telomeric sequence, Chr 19, q arm protein-coding 105246897 XR_880379 Gm42098 - - X A3.1|X predicted gene, 42098 ncRNA 100418415 Gm19196 - - 12|12 A1.3 TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B pseudogene pseudo 546362 Gm5943 EG546362 - X|X E1 ubiquitin-conjugating enzyme E2N pseudogene pseudo 668584 Gm9255 EG668584 - 12 A1.2|12 hippocalcin-like 1 pseudogene pseudo 100039010 XM_017318919 ENSMUSG00000095763 LOC100039010 - - 5|5 PRAME family member 8-like protein-coding 102633402 Gm31236 - - 10|10 predicted gene, 31236 protein-coding 70838 4921507H08Rik - - 7|7 RIKEN cDNA 4921507H08 gene protein-coding 102637256 XR_391471 Gm34121 - - 7 B5|7 predicted gene, 34121 ncRNA 97714 C78891 - - - expressed sequence C78891 protein-coding 100124641 NR_035409 ENSMUSG00000076033 Mir692-3 Mir692-2b|Mirn692-2b|mmu-mir-692-3 - 13 C1|13 microRNA 692-3 ncRNA 102639594 Gm35870 - - Y|Y tRNA methyltransferase 112 homolog pseudo 74995 Mm.84413 NR_046281 ENSMUSG00000086799 4930502E09Rik - - 11|11 C RIKEN cDNA 4930502E09 gene ncRNA 108167793 XR_001779713 Gm46210 - - 10 A1|10 predicted gene, 46210 ncRNA 100036072 Mp53d2 - - 19 35.97 cM modifier of p53-deficiency 2 unknown 258153 Mm.376124 NM_001011851 ENSMUSG00000058275 Olfr412 MOR127-5P - 11|11 B5 olfactory receptor 412 protein-coding 69489 Mm.150495 2310007J06Rik - - 14|14 RIKEN cDNA 2310007J06 gene unknown 170807 Cdcs6 - - - cytokine deficiency colitis susceptibility 6 unknown 13593 Mm.258708 NM_010096 ENSMUSG00000010476 Ebf3 3110018A08Rik|O/E-2|mKIAA4201 - 7|7 F3 early B cell factor 3 protein-coding 100035228 Bodw4 - - - body weight 4 unknown 78277 5330428N10Rik - - 10|10 RIKEN cDNA 5330428N10 gene protein-coding 12909 Mm.18072 NM_007761 ENSMUSG00000025532 Crcp AL022669 - 5|5 G1.3 calcitonin gene-related peptide-receptor component protein protein-coding 61901 D2Mit436 - - 2 47.87 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 436 unknown 52825 D5Bwg0670e - - - DNA segment, Chr 5, Brigham & Women's Genetics 0670 expressed unknown 17684 Mm.272321 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj - 10|10 A2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 protein-coding 226169 Mm.2415 NM_145504 ENSMUSG00000055491 Pprc1 A930018M19|BC013720|PRC|mKIAA0595 - 19|19 C3 peroxisome proliferative activated receptor, gamma, coactivator-related 1 protein-coding 102635672 Gm32951 - - 8|8 predicted gene, 32951 ncRNA 241289 Mm.330095 NM_001005420 ENSMUSG00000035829 Ppp1r26 Gm347|Kiaa0649|mKIAA0649 - 2|2 A3 protein phosphatase 1, regulatory subunit 26 protein-coding 231368 Gm4866 EG231368 - 5|5 E1 ribosomal protein, large, P0 pseudogene pseudo 622527 Gm14879 EG622527 - X|X D predicted gene 14879 protein-coding 106634 Mm.384142 AI661323 - - - expressed sequence AI661323 protein-coding 60965 D9Mit324 - - 9 14.37 cM DNA Segment, Chr 9 Massachusetts Institute of Technology 324 unknown 105246484 Gm41769 - - 18|18 predicted gene, 41769 ncRNA 102637123 Gm34015 - - Y|Y predicted gene, 34015 protein-coding 97091 C81072 - - - expressed sequence C81072 unknown 110080 Tme - - - T-associated maternal effect unknown 493920 AF357341 MBII-19 - 12 60.56 cM snoRNA AF357341 snoRNA 107494 Scfr3 - - - stem cell frequency regulator 3 protein-coding 109697 Mm.25377 NM_025350 ENSMUSG00000054446 Cpa1 0910001L12Rik|Cpa - 6 A3.3|6 12.52 cM carboxypeptidase A1, pancreatic protein-coding 52047 D8Ggc4e - - - DNA segment, Chr 8, G. Consalez 4, expressed unknown 100417225 Gm18464 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 62825 D13Mit243 - - 13 21.6 cM DNA segment, Chr 13, Massachusetts Institute of Technology 243 unknown 100036496 Mtxe4 - - - methotrextate efficacy 4 unknown 626316 Mm.270762 NM_001037926 ENSMUSG00000066009 Zfp987 Gm13051 - 4 E1|4 zinc finger protein 987 protein-coding 402760 Mm.446514 A430050A11Rik - - 1|1 RIKEN cDNA A430050A11 gene protein-coding 69603 Mm.390632 NR_045495 ENSMUSG00000100410 2310020H05Rik - - 13|13 D1 RIKEN cDNA 2310020H05 gene ncRNA 100043213 Mm.388967 NR_015552 ENSMUSG00000087620 5330434G04Rik - - X D|X RIKEN cDNA 5330434G04 gene ncRNA 102635734 Gm32996 - - 5 F|5 predicted gene, 32996 pseudo 61257 D2Mit139 - - 2 75.57 cM DNA segment, Chr 2, Massachusetts Institute of Technology 139 unknown 67956 Mm.137966 NM_030241 ENSMUSG00000049327 Kmt5a 2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8 - 5|5 F lysine methyltransferase 5A protein-coding 110891 Mm.241147 NM_148946 ENSMUSG00000030376 Slc8a2 Ncx2 - 7 A2|7 8.75 cM solute carrier family 8 (sodium/calcium exchanger), member 2 protein-coding 109637 Mm.25471 NM_026815 ENSMUSG00000006313 Upk1a 1110031P12Rik|AU019298|C87192|Tspan21|Upk1 - 7 B1|7 18.78 cM uroplakin 1A protein-coding 14016 Evi12 - - - ecotropic viral integration site 12 protein-coding 108168483 XR_001782842 Gm46688 - - X C3|X predicted gene, 46688 ncRNA 105243031 XR_869884 Gm39072 - - 7 F1|7 predicted gene, 39072 ncRNA 100312479 Vmn1r-ps40 - - 7 A1|7 vomeronasal 1 receptor, pseudogene 40 pseudo 62233 D17Mit44 - - - DNA segment, Chr 17, Massachusetts Institute of Technology 44 unknown 102467542 n-TIaat3 n-Ti3 - 13 A3.1|13 nuclear encoded tRNA isoleucine 3 (anticodon AAT) tRNA 667902 Gm8872 EG667902 - 6|6 C1 ornithine decarboxylase, structural 1 pseudogene pseudo 628498 Igkv13-78-1 EG628498|Gm6886|gb33r - 6 C1|6 immunoglobulin kappa variable 13-78-1 pseudo 404323 Mm.377939 NM_207561 ENSMUSG00000075203 Olfr1040 MOR185-12 - 2|2 D olfactory receptor 1040 protein-coding 100035105 Manln19 - - 19 13.82 cM mandible length 19 unknown 259056 Mm.377813 NM_147054 ENSMUSG00000073959 Olfr584 MOR30-2 - 7|7 E3 olfactory receptor 584 protein-coding 30945 Mm.5181 NM_013923 ENSMUSG00000022280 Rnf19a AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp - 15|15 B3.1 ring finger protein 19A protein-coding 226421 Mm.44508 NM_145509 ENSMUSG00000052688 Rab7b 5430435G22Rik - 1|1 E4 RAB7B, member RAS oncogene family protein-coding 328019 Mm.189646 NM_177801 ENSMUSG00000044787 Spata32 4933400C05Rik|VAD1.2 - 11|11 E1 spermatogenesis associated 32 protein-coding 74407 Mm.31590 NM_028918 ENSMUSG00000006784 Ttc25 4933404O19Rik - 11|11 D tetratricopeptide repeat domain 25 protein-coding 102640021 XR_384622 Gm36195 - - 16 A1|16 predicted gene, 36195 ncRNA 18994 Mm.56946 NM_008901 ENSMUSG00000056854 Pou3f4 Brn-4|Brn4|OTF-9|Otf9|Slf|oct-9 - X E1|X 48.2 cM POU domain, class 3, transcription factor 4 protein-coding 621102 Gm6200 EG621102 - 13|13 A3.3 predicted gene 6200 pseudo 22364 Mm.333851 NM_009514 ENSMUSG00000000903 Vpreb3 8HS-20|AI528709|Vpreb-3 - 10|10 C1 pre-B lymphocyte gene 3 protein-coding 234839 Mm.37324 NM_001037298 ENSMUSG00000014444 Piezo1 9630020g22|Fam38a|mKIAA0233 - 8|8 E1 piezo-type mechanosensitive ion channel component 1 protein-coding 74925 Mm.386304 NR_046277 ENSMUSG00000085238 4930479D17Rik - - 6|6 G3 RIKEN cDNA 4930479D17 gene ncRNA 22145 Mm.1155 NM_009447 ENSMUSG00000026202 Tuba4a M[a]4|Tuba4 - 1|1 C4 tubulin, alpha 4A protein-coding 319285 Mm.446859 A430061O12Rik - - 4|4 RIKEN cDNA A430061O12 gene protein-coding 66890 Mm.38868 NM_025828 ENSMUSG00000021484 Lman2 1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36 - 13|13 B1 lectin, mannose-binding 2 protein-coding 100038528 Mm.482686 XR_865972 Gm10851 - - 2 A1|2 predicted gene 10851 unknown 100038548 Mm.484207 Gm10521 - - - predicted gene 10521 unknown 22115 Mm.310201 NM_009436 ENSMUSG00000045521 Tssk2 DGS-G|SPOGA2|Stk22b|Tsk2 - 16 A3|16 11.09 cM testis-specific serine kinase 2 protein-coding 56572 87M6F7R - - - DNA segment, 87M6F7R unknown 102642374 Gm38607 - - 5|5 predicted gene, 38607 ncRNA 638903 Gm11516 Cct3-1P - 11|11 D chaperonin containing Tcp1, subunit 3 (gamma) pseudogene pseudo 105245939 XR_875320 ENSMUSG00000115820 Gm41311 - - 15 B3.1|15 predicted gene, 41311 ncRNA 442821 Mm.118030 NR_045151 ENSMUSG00000101799 9330175M20Rik - - 1 C1.1|1 RIKEN cDNA 9330175M20 gene ncRNA 102466676 NR_105856 ENSMUSG00000098771 Mir6538 Gm27439|mmu-mir-6538 - 12|12 A2 microRNA 6538 ncRNA 723894 NR_029808 ENSMUSG00000065542 Mir224 Mirn224|mir-224|mmu-mir-224 - X|X A7.3 microRNA 224 ncRNA 100043397 Gm4412 - - 14|14 E2.2 predicted gene 4412 pseudo 27754 D1Sta12 - - - DNA segment, Chr 1, Philip Stanier 12 unknown 245583 Mm.272850 NM_153109 ENSMUSG00000100133 Tgif2lx1 Tex1|Tgif2lx|Tgifx1 - X|X E1 TGFB-induced factor homeobox 2-like, X-linked 1 protein-coding 109658 Mm.268863 NM_001005506 ENSMUSG00000053841 Txlna 2600010N21Rik|AI425952|AW209241|Il14|Txln - 4 D2.2|4 63.26 cM taxilin alpha protein-coding 258686 Mm.377640 NM_146691 ENSMUSG00000049015 Olfr1467 MOR202-15 - 19|19 A olfactory receptor 1467 protein-coding 105245776 XR_874685 Gm41172 - - 14 D1|14 predicted gene, 41172 ncRNA 102638071 XR_001780971 Gm34721 - - 13 B2|13 predicted gene, 34721 ncRNA 258812 Mm.377702 NM_146816 ENSMUSG00000044798 Olfr923 MOR164-2 - 9|9 A5.1 olfactory receptor 923 protein-coding 111217 Amh-rs4 - - - anti-Mullerian hormone, related sequence 4 protein-coding 100417611 Gm18715 - - 15|15 A1 ring finger and WD repeat domain 2 pseudogene pseudo 404364 Olfr256 Olfr256-ps1 - - olfactory receptor 256 protein-coding 53667 D8Mc1 D8McC1 - - DNA segment, Chr 8, McClelland 1 unknown 56351 Mm.305816 NM_019766 ENSMUSG00000071072 Ptges3 5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177 - 10|10 D3 prostaglandin E synthase 3 protein-coding 18343 Mm.246538 NM_146830 ENSMUSG00000062649 Olfr44 IB3|MOR171-5 - 9|9 A5.1 olfactory receptor 44 protein-coding 67863 Mm.296082 NM_024211 ENSMUSG00000014606 Slc25a11 2310022P18Rik|2oxoc - 11 B3|11 43.21 cM solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11 protein-coding 102631690 Gm29964 - - 4|4 predicted gene, 29964 protein-coding 100038996 Gm16380 EG434405 - 9|9 A5.3 SIVA1, apoptosis-inducing factor pseudogene pseudo 67936 Mm.271719 NM_026464 ENSMUSG00000042660 Wdr55 2410080P20Rik|C80692 - 18|18 B2 WD repeat domain 55 protein-coding 105244779 XR_868529 Gm40331 Gm42954 - 5 G1.1-G1.2|5 predicted gene, 40331 ncRNA 100041516 XR_881027 LOC100041516 - - - protein FAM205A-like pseudo 19045 Mm.1970 NM_031868 ENSMUSG00000040385 Ppp1ca Ppp1c|dism2 - 19|19 A protein phosphatase 1, catalytic subunit, alpha isoform protein-coding 100042570 Gm16439 EG666716 - 14|14 C1 BCL2/adenovirus E1B interacting protein 3 pseudo 277010 Mm.206250 NM_183195 ENSMUSG00000044345 Marveld1 AI504298|Mrvldc1 - 19|19 C3 MARVEL (membrane-associating) domain containing 1 protein-coding 100312507 Vmn1r-ps61 - - 7|7 A1 vomeronasal 1 receptor, pseudogene 61 pseudo 102635833 LOC102635833 - - 14 A2 sperm motility kinase X-like pseudo 53997 D16Jhu26 - - - DNA segment, Chr 16, Johns Hopkins University 26 unknown 100041488 Mm.465212 NM_001099346 ENSMUSG00000058725 Gm11937 - - 11|11 D predicted gene 11937 protein-coding 100417044 Gm18382 - - 3|3 E1 mediator of cell motility 1 pseudogene pseudo 102467507 n-TCgca51 n-Tc51 - 11 D|11 nuclear encoded tRNA cysteine 51 (anticodon GCA) tRNA 56516 Mm.42247 NM_019711 ENSMUSG00000040043 Rbms2 2610315E04Rik|Scr3 - 10|10 D3 RNA binding motif, single stranded interacting protein 2 protein-coding 71481 Mm.158704 NM_027808 ENSMUSG00000028028 Alpk1 8430410J10Rik|LAK - 3|3 G2 alpha-kinase 1 protein-coding 77371 Mm.33878 NM_175255 ENSMUSG00000036391 Sec24a - - 11|11 B1.3 Sec24 related gene family, member A (S. cerevisiae) protein-coding 100417802 Gm18837 - - 18|18 C developmental pluripotency associated 4 pseudogene pseudo 100043645 Mm.422735 NM_001037248 ENSMUSG00000095363 Gm4567 EG381936|Gm5156 - 7 A3|7 predicted gene 4567 protein-coding 111674 Minta - - - Moloney MuLV integration site, EC cells, a other 100040701 Gm2916 - - 14 A1|14 predicted gene 2916 protein-coding 102635461 XR_373555 Gm32793 - - 1 C4|1 predicted gene, 32793 ncRNA 107894 Minute Mnt - - minute imprinted gene in the Igf2 region protein-coding 61278 D2Mit247 - - 2 44.29 cM DNA segment, Chr 2, Massachusetts Institute of Technology 247 unknown 665442 Vmn2r-ps36 EG665442 - 7|7 A1 vomeronasal 2, receptor, pseudogene 36 pseudo 77505 Mm.220330 XM_006508382 ENSMUSG00000030882 Dnhd1 8030491N06Rik - 7|7 E3 dynein heavy chain domain 1 protein-coding 61070 D2Mit361 - - 2 11.76 cM DNA segment, Chr 2, Massachusetts Institute of Technology 361 unknown 105242871 XR_880182 Gm38960 - - 11 D|11 predicted gene, 38960 ncRNA 194856 Mm.379498 NM_201236 ENSMUSG00000071770 Rhox4e Rhox4|Rhox4.5|Rhox4d - X|X A3.3 reproductive homeobox 4E protein-coding 102637378 Gm34206 - - 8|8 predicted gene, 34206 ncRNA 105246566 Gm41839 - - 19|19 predicted gene, 41839 ncRNA 235040 Mm.440165 NM_153583 ENSMUSG00000002820 Atg4d 9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4 - 9|9 A3 autophagy related 4D, cysteine peptidase protein-coding 24102 Mm.23312 NM_011907 ENSMUSG00000031372 Trex2 - - X|X A7.3 three prime repair exonuclease 2 protein-coding 112014 Bw7 - - - body weight QTL 7 unknown 14955 Mm.14802 NR_001592 ENSMUSG00000000031 H19 AI747191|EyeLinc6 - 7 F5|7 87.97 cM H19, imprinted maternally expressed transcript ncRNA 19539 Rb(4.12)1Nam Rb1Nam - - Robertsonian translocation, Chr 4 and 12, Namur 1 other 626708 Mm.305275 NM_001079933 ENSMUSG00000060070 Defa26 Defcr26 - 8|8 A2 defensin, alpha, 26 protein-coding 114712 Mm.204643 NM_033522 ENSMUSG00000046518 Ferd3l Mnato3|N-twist|Nato|Nato3|Ntwist|Ptfb|bHLHa31|fer3 - 12|12 A3 Fer3 like bHLH transcription factor protein-coding 67763 Mm.25125 NM_026364 ENSMUSG00000015869 Prpsap1 5730409F23Rik|PAP39 - 11|11 E2 phosphoribosyl pyrophosphate synthetase-associated protein 1 protein-coding 12591 Mm.20358 NM_007673 ENSMUSG00000029646 Cdx2 Cdx-2 - 5 G3|5 86.86 cM caudal type homeobox 2 protein-coding 382504 Rpsa-ps5 Gm12083 - 11|11 A3.3 ribosomal protein SA, pseudogene 5 pseudo 12387 Mm.291928 NM_007614 ENSMUSG00000006932 Ctnnb1 Bfc|Catnb|Mesc - 9 F4|9 72.19 cM catenin (cadherin associated protein), beta 1 protein-coding 100035774 Moo4 Mobe4 - - modifier of obesity 4 unknown 69579 XM_006508373 2310034P14Rik - - 7 D3|7 RIKEN cDNA 2310034P14 gene protein-coding 102633808 Gm31543 - - 5|5 predicted gene, 31543 ncRNA 68475 Mm.21444 NM_023464 ENSMUSG00000026966 Ssna1 1110003H09Rik|1190004J23Rik|AA934184|N14|NA14 - 2|2 A3 SS nuclear autoantigen 1 protein-coding 102467257 n-TNgtt8 n-Tn8 - 11 D|11 nuclear encoded tRNA asparagine 8 (anticodon GTT) tRNA 102637301 XR_378051 Gm34148 - - 6 F3|6 predicted gene, 34148 ncRNA 14583 Mm.19893 NM_013528 ENSMUSG00000029992 Gfpt1 2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt - 6 D1|6 37.81 cM glutamine fructose-6-phosphate transaminase 1 protein-coding 105243912 XR_865369 Gm39631 - - 1 B|1 predicted gene, 39631 ncRNA 497255 Mm.23084 LOC497255 - - - uncharacterized LOC497255 unknown 15505 Mm.270681 NM_013559 ENSMUSG00000029657 Hsph1 105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105 - 5 G3|5 89.18 cM heat shock 105kDa/110kDa protein 1 protein-coding 258244 Olfr1004-ps1 GA_x5J8B7W2F7R-2521-3120|MOR213-8 - 2|2 D olfactory receptor 1004, pseudogene 1 pseudo 108167904 XR_001780228 Gm46283 - - 11 B2|11 predicted gene, 46283 ncRNA 102634739 XR_001779702 Gm32250 - - 1 H6|1 predicted gene, 32250 ncRNA 100043576 Gm4528 - - 7|7 A3 chromobox protein homolog 3 pseudogene pseudo 282619 Mm.250717 NM_172205 ENSMUSG00000046056 Sbsn 1110005D19Rik|AI747508 - 7 B1|7 suprabasin protein-coding 107305679 LOC107305679 - - 11 D origin of replication 3' to Hoxb1 biological-region 791422 Mm.341562 NR_033582 ENSMUSG00000069796 Gm11426 - - 11 C|11 predicted gene 11426 ncRNA 107802 Etet1 - - - epidermal tumor expressed transcript 1 unknown 668050 Mm.337670 Gm8947 EG668050 - 1|1 G1 predicted gene 8947 protein-coding 100316694 NR_035462 ENSMUSG00000088459 Mir1941 mmu-mir-1941 - 15 F2|15 56.81 cM microRNA 1941 ncRNA 382231 Mm.328112 NM_001359671 ENSMUSG00000046774 8030474K03Rik Gm1142 - X|X D RIKEN cDNA 8030474K03 gene protein-coding 100503468 Mm.446943 NR_040371 ENSMUSG00000085498 Gm14023 - - 2 F1|2 62.9 cM predicted gene 14023 ncRNA 21143 T(2;5)43Ad T43Ad - - reciprocal translocation, Chr 2 and 5, Adler 43 other 433225 Gm5513 EG433225 - 19|19 A eukaryotic translation initiation factor 4A1 pseudogene pseudo 493005 Orgwq2 - - 2 34.9 cM organ weight QTL 2 unknown 81845 Mm.7405 NM_032460 ENSMUSG00000092417 Gpank1 Bat-4|Bat4|D17H6S54E|G5 - 17 B1|17 18.59 cM G patch domain and ankyrin repeats 1 protein-coding 64424 Mm.282932 NM_022811 ENSMUSG00000028318 Polr1e 53kDa|AU042259|D030019D19Rik|Paf53|Praf1 - 4|4 B1 polymerase (RNA) I polypeptide E protein-coding 102465661 NR_106058 ENSMUSG00000106193 Mir7090 mmu-mir-7090 - 9|9 F4 microRNA 7090 ncRNA 213439 Mm.383562 NM_001033251 ENSMUSG00000073008 Gpr174 Gm376|Lypsr3 - X|X D G protein-coupled receptor 174 protein-coding 100039446 XM_006498495 Gm2240 - - 2 A3|2 predicted gene 2240 protein-coding 100035608 Egq5 - - 17 19.62 cM early growth QTL 5 unknown 17920 Mm.4040 NM_008662 ENSMUSG00000033577 Myo6 BC029719|Tlc|sv - 9 E1|9 43.98 cM myosin VI protein-coding 378709 Musd1 pro - - Mus Musculus type D-like endogenous retrovirus 1 other 102637529 XR_383838 Gm34315 - - 15 A1|15 predicted gene, 34315 ncRNA 77841 Mm.417131 Far2os2 B230104C08Rik - 6|6 G3 fatty acyl CoA reductase 2, opposite strand 2 protein-coding 100418309 Gm19133 - - 2|2 H3 heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene pseudo 104418 Mm.314923 NM_138306 ENSMUSG00000040479 Dgkz E130307B02Rik|F730209L11Rik|mDGK[z] - 2|2 E1 diacylglycerol kinase zeta protein-coding 237749 Mm.339935 NR_028066 ENSMUSG00000086909 Gm4926 EG237749 - 11|11 B1.1 T-cell immunoglobulin and mucin domain containing 2 pseudogene pseudo 11848 Mm.757 NM_016802 ENSMUSG00000007815 Rhoa Arha|Arha1|Arha2 - 9|9 F1-F2 ras homolog family member A protein-coding 100036374 Erph1 - - - ear punch hole 1 unknown 78240 Mm.99424 NM_030059 ENSMUSG00000036958 Cst11 9230101F08Rik|BB067629|CRES2|mCSTE1 - 2|2 G3 cystatin 11 protein-coding 15199 Mm.378937 NM_013546 ENSMUSG00000042770 Hebp1 Hebp|p22HBP - 6|6 G1 heme binding protein 1 protein-coding 100038505 Mm.387146 Gm10523 - - - predicted gene 10523 ncRNA 78560 Mm.87046 NM_054044 ENSMUSG00000031486 Adgra2 8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531 - 8|8 A2 adhesion G protein-coupled receptor A2 protein-coding 67383 Mm.306602 NM_026120 ENSMUSG00000024726 Carnmt1 2410127L17Rik - 19 B|19 carnosine N-methyltransferase 1 protein-coding 102640879 XR_382181 Gm36839 - - 13 A3.3|13 predicted gene, 36839 ncRNA 624183 Gm6479 EG624183 - 15|15 A1 actin, beta-like 2 pseudogene pseudo 359860 DXMgc45 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 45 unknown 102638910 Gm35357 - - 13|13 predicted gene, 35357 protein-coding 114873 Mm.325499 NM_001081270 ENSMUSG00000032087 Dscaml1 4921507G06Rik|4930435C18Rik|BB239540|mKIAA1132 - 9|9 A5.2 DS cell adhesion molecule like 1 protein-coding 258350 Mm.377447 NM_146353 ENSMUSG00000109354 Olfr706 MOR283-11 - 7|7 E3 olfactory receptor 706 protein-coding 22759 Mm.436633 NM_011765 ENSMUSG00000095990 Zfp97 NGD16-4 - 17|17 A3.1 zinc finger protein 97 protein-coding 102641617 XR_877768 Gm27151 - - 19 B|19 predicted gene 27151 ncRNA 102632682 XR_388996 Gm38448 - - 11 D|11 predicted gene, 38448 ncRNA 100035200 Vacq3 - - 2 6.25 cM voluntary alcohol consumption QTL 3 unknown 62964 D13Mit293 - - 13 63.93 cM DNA Segment, Chr 13, Massachusetts Institute of Technology 293 unknown 100049601 Fmtq21 - - - femur mechanical trait QTL 21 unknown 665874 Gm10769 EG665874 - 13|13 B3 zinc finger protein pseudogene pseudo 319320 B230219N05Rik - - 7|7 RIKEN cDNA B230219N05 gene protein-coding 112371 Fatq1 - - - percent fat, subcutaneous and gonadal, QTL 1 unknown 73252 Mm.158974 1600022D10Rik - - 17|17 E1.3 RIKEN cDNA 1600022D10 gene ncRNA 19517 Rb(2.8)2Lub Rb2Lub - - Robertsonian translocation, Chr 2 and 8, Lubeck 2 other 384144 Gm5288 EG384144 - 5|5 A1 anaphase-promoting complex subunit 5 pseudogene pseudo 66912 Mm.288669 NM_025840 ENSMUSG00000020547 Bzw2 1110001I24Rik|Bdm2|HSPC028 - 12|12 A3 basic leucine zipper and W2 domains 2 protein-coding 105244854 XR_872677 Gm40388 - - 12 A3|12 predicted gene, 40388 ncRNA 102467306 n-TGccc2 n-Tg2 - - nuclear encoded tRNA glycine 2 (anticodon CCC) tRNA 74457 LOC74457 - - 5|5 uncharacterized LOC74457 unknown 71633 Mm.441506 4833414E09Rik AI593012 - 1|1 H2.3 RIKEN cDNA 4833414E09 gene unknown 67555 Mm.84115 NM_026233 ENSMUSG00000035057 Mgat4d 4933434I20Rik|GnT1IP|GnT1IP-L - 8|8 C2 MGAT4 family, member C protein-coding 104303 Mm.291247 NM_025859 ENSMUSG00000060904 Arl1 2310008D22Rik|AU019749 - 10|10 C1 ADP-ribosylation factor-like 1 protein-coding 102637548 Gm17521 - - X|X 49.81 cM predicted gene, 17521 protein-coding 105244140 XR_866185 Gm39807 - - 2 B|2 predicted gene, 39807 ncRNA 100043427 Gm13932 - - 2|2 E3 high mobility group box 2 pseudogene pseudo 621705 Gemin6-ps EG621705|Gm6253 - 6|6 F1 gem nuclear organelle associated protein 6, pseudogene pseudo 238673 Mm.300065 NM_175494 ENSMUSG00000044934 Zfp367 8030486J21Rik|ZFF29a|ZFF29b|Znf367 - 13|13 B3 zinc finger protein 367 protein-coding 100039815 XM_017315320 Gm2436 - - 12 C1|12 predicted gene 2436 protein-coding 212965 Mm.387212 NR_015583 ENSMUSG00000109628 BC024386 BC039766 - 7|7 F5 cDNA sequence BC023486 ncRNA 71594 9130009I01Rik - - 7|7 RIKEN cDNA 9130009I01 gene protein-coding 338370 Mm.255348 NM_177393 ENSMUSG00000000197 Nalcn A530023G15Rik|AI849508|Vgcnl1 - 14|14 E5 sodium leak channel, non-selective protein-coding 71298 Mm.85037 XR_383761 4933431J24Rik - - 14|14 E4 RIKEN cDNA 4933431J24 gene ncRNA 19949 Rpl30-ps3 RpL30-4 - 2|2 E1 ribosomal protein L30, pseudogene 3 pseudo 30955 Mm.101369 NM_020272 ENSMUSG00000020573 Pik3cg 5830428L06Rik|PI3Kgamma|p110gamma - 12|12 A3 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 381801 Mm.333322 NM_001033463 ENSMUSG00000056952 Tatdn2 AI646012|mKIAA0218 - 6 E3|6 52.83 cM TatD DNase domain containing 2 protein-coding 665511 Gm7666 EG665511 - 15 A1|15 prohibitin pseudogene pseudo 97385 C80446 - - - expressed sequence C80446 unknown 12557 Mm.33402 NM_019753 ENSMUSG00000028217 Cdh17 HPT-1|HPT-1/LI - 4|4 A1 cadherin 17 protein-coding 100862126 Mm.459166 NM_001270613 ENSMUSG00000094662 Defa36 Gm21498 - 8 A2|8 defensin, alpha, 36 protein-coding 102639242 XR_880340 Gm35598 - - 11 E2|11 predicted gene, 35598 ncRNA 15559 Mm.439747 NM_008311 ENSMUSG00000026228 Htr2b 5-HT2B|AJ012488|AV377389 - 1|1 C5 5-hydroxytryptamine (serotonin) receptor 2B protein-coding 100041675 Gm3466 - - 14 A1|14 ribosomal protein L3 pseudogene pseudo 100034958 Alcrsp3 - - - alcohol response 3 unknown 74982 NR_126548 ENSMUSG00000115372 1700100I10Rik 1700085D13Rik|4930481K08Rik - 14|14 E4 RIKEN cDNA 1700100I10 gene ncRNA 73162 Mm.238081 NM_028453 ENSMUSG00000041161 Otud3 3110030K17Rik - 4|4 D3 OTU domain containing 3 protein-coding 102639403 Gm29401 - - Y|Y predicted gene 29401 protein-coding 102639448 XR_376466 Gm35760 - - 4 C6|4 predicted gene, 35760 ncRNA 100502875 Gm12676 - - 4|4 45.52 cM predicted gene 12676 ncRNA 108230 Hmgb1-rs19 Hmg1-rs19 - - high mobility group box 1, related sequence 19 pseudo 13505 Mm.33740 NM_013504 ENSMUSG00000044322 Dsc1 1110020A10Rik|AI507491 - 18|18 A2 desmocollin 1 protein-coding 69717 Mm.439676 XM_017317761 Gm10499 - - 17|17 B1 predicted gene 10499 protein-coding 28255 D11Moh24 - - 11 59.52 cM DNA segment, Chr 11, KL Mohlke 24 unknown 14073 Mm.256025 NM_010173 ENSMUSG00000034171 Faah AW412498 - 4 D1|4 53.08 cM fatty acid amide hydrolase protein-coding 110120476 LOC110120476 - - - VISTA enhancer mm1524 biological-region 100040801 Gm2974 - - 14 A1|14 predicted gene 2974 protein-coding 109279840 LOC109279840 - - - Fgfr1 promoter region biological-region 100046095 Gm17771 - - 3|3 A2 zinc finger protein 320-like pseudo 669965 Gm9474 - - 18 A1|18 SUMO/sentrin specific peptidase 5 pseudogene pseudo 12572 Mm.259718 NM_009874 ENSMUSG00000069089 Cdk7 AI323415|AI528512|C230069N13|Cdkn7|Crk4 - 13 D1|13 53.23 cM cyclin-dependent kinase 7 protein-coding 108169183 LOC108169183 - - 6 F3 zinc finger protein 665-like pseudo 105244290 XR_866724 Gm39929 Gm45243 - 2 F1|2 predicted gene, 39929 ncRNA 67665 Mm.272801 NM_026302 ENSMUSG00000024603 Dctn4 1110001K06Rik|4930547K17Rik|C130039E17Rik|p62 - 18|18 D3 dynactin 4 protein-coding 76282 Mm.30130 NM_182805 ENSMUSG00000022546 Gpt 1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1 - 15 D3|15 36.28 cM glutamic pyruvic transaminase, soluble protein-coding 27892 D16Ium73 - - 16 30.6 cM DNA segment, Chr 16, Indiana University Medical 73 unknown 53089 CA178.8 - - - DNA segment, CA178.8 unknown 52716 D13Ertd776e - - 13 54.94 cM DNA segment, Chr 13, ERATO Doi 776, expressed protein-coding 28262 D10Jhu59 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 59 unknown 68188 Mm.130902 NM_026605 ENSMUSG00000023118 Sympk 1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM - 7|7 A3 symplekin protein-coding 628110 Mm.428894 XR_001783637 Gm14408 - - 2|2 H4 predicted gene 14408 unknown 100503900 Gm19949 - - 5 E5|5 50.68 cM NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-like pseudo 72401 Mm.22716 NM_024497 ENSMUSG00000027075 Slc43a1 2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504 - 2|2 D solute carrier family 43, member 1 protein-coding 320259 A430108C13Rik - - 14|14 RIKEN cDNA A430108C13 gene protein-coding 217116 Mm.156123 NM_144827 ENSMUSG00000020867 Spata20 Tisp78 - 11|11 D spermatogenesis associated 20 protein-coding 16725 l17Wis7 l(17)-7Wis - - lethal, Chr 17, U Wisconsin 7 unknown 102640615 Gm10357 - - 13|13 3.5 cM predicted gene 10357 pseudo 70970 Mm.251485 NR_040593 ENSMUSG00000106589 4931419H13Rik - - 3|3 C RIKEN cDNA 4931419H13 gene ncRNA 109676 Mm.220242 NM_178655 ENSMUSG00000032826 Ank2 100043364|AI835472|AW491075|Ank-2|Gm4392 - 3 G2|3 56.07 cM ankyrin 2, brain protein-coding 11836 Mm.220946 NM_009703 ENSMUSG00000001127 Araf 1200013E08Rik|A-Raf|AW495444|Araf1 - X A1.3|X 16.3 cM Araf proto-oncogene, serine/threonine kinase protein-coding 105246598 Gm41868 - - 19|19 predicted gene, 41868 ncRNA 105663 Mm.319204 NM_153083 ENSMUSG00000045691 Thtpa AW122966 - 14|14 C3 thiamine triphosphatase protein-coding 52455 D11Ertd49e - - - DNA segment, Chr 11, ERATO Doi 49, expressed unknown 100035992 Mpcp9 - - - myeloid progenitor cell proliferation 9 unknown 102637490 Mm.421289 NR_155351 ENSMUSG00000116371 Gm34284 - - 15 F1|15 predicted gene, 34284 ncRNA 230761 Mm.22616 NM_001081098 ENSMUSG00000028799 Zfp362 - - 4|4 D2.2 zinc finger protein 362 protein-coding 208634 Mm.209875 NM_145363 ENSMUSG00000039691 Tspan10 Ocsp - 11|11 E2 tetraspanin 10 protein-coding 17841 Mm.335875 NM_008647 ENSMUSG00000078688 Mup2 AA589603|Mup-2|Mup18|Mup4 - 4|4 B3 major urinary protein 2 protein-coding 272322 Mm.333500 NM_172309 ENSMUSG00000040187 Arntl2 4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6 - 6|6 G3 aryl hydrocarbon receptor nuclear translocator-like 2 protein-coding 73419 Mm.346733 NM_024261 ENSMUSG00000061759 Armt1 1700052N19Rik|AW320013|AW536799 - 10|10 A1 acidic residue methyltransferase 1 protein-coding 102638003 LOC102638003 - - 15 A1 homeobox protein SEBOX-like pseudo 108657 Mm.200971 NM_181405 ENSMUSG00000026269 Rnpepl1 1110014H17Rik|AI894167 - 1|1 D arginyl aminopeptidase (aminopeptidase B)-like 1 protein-coding 105246910 XR_880414 Gm42107 - - 5 E1|5 predicted gene, 42107 ncRNA 100036332 Ebmgr1 - - - epistatic bone marrow graft rejection 1 unknown 723870 NR_029971 ENSMUSG00000070065 Mir451a Mir451|Mirn451|mir-451a|mmu-mir-451|mmu-mir-451a - 11|11 B5 microRNA 451a ncRNA 108168023 LOC108168023 - - 12 E 60S ribosomal protein L29 pseudogene pseudo 668632 Gm9279 EG668632 - 12|12 F2 NOP2 nucleolar protein homolog pseudogene pseudo 233186 Mm.290569 NM_145581 ENSMUSG00000039013 Siglecf Siglec5|mSiglec-F - 7|7 B3 sialic acid binding Ig-like lectin F protein-coding 102637873 Mm.472000 XR_380645 LOC102637873 - - 10 C1 uncharacterized LOC102637873 ncRNA 109859 Ads1 Ads-1 - - anti dsDNA antibody 1 unknown 105246822 XR_879267 Gm42046 - - 8 E1|8 predicted gene, 42046 ncRNA 100043785 Gm14094 - - 2|2 F2 ribosomal protein L15 pseudogene pseudo 667351 Gm8588 EG667351 - 13|13 A5 3-phosphoglycerate dehydrogenase pseudogene pseudo 69319 Mm.57452 NR_036590 1700001K23Rik - - 19|19 D2 RIKEN cDNA 1700001K23 gene ncRNA 21027 T(1;8)63H T63H - - reciprocal translocation, Chr 1 and 8, Harwell 63 other 102632971 Scgb2b8-ps Abpbg8-ps - 7 B1|7 secretoglobin, family 2B, member 8, pseudogene pseudo 77900 6720473M11Rik - - 16|16 RIKEN cDNA 6720473M11 gene protein-coding 13254 Del(1)66H Del66H - - deletion, Chr 1, Harwell 66 other 257795 Olfr946-ps1 EG257795|GA_x5J8B7W60AJ-354484-355428|Gm5016 - 9 A5.1|9 olfactory receptor 946, pseudogene 1 pseudo 105244688 XR_868150 Gm40250 - - 4 D2.2|4 predicted gene, 40250 ncRNA 102632517 XR_386178 Gm30572 - - 18 B3|18 predicted gene, 30572 ncRNA 62514 D11Mit117 - - 11 46.74 cM DNA segment, Chr 11, Massachusetts Institute of Technology 117 unknown 102638148 XR_391573 Gm34782 - - 7 C|7 predicted gene, 34782 ncRNA 105247623 LOC105247623 - - - uncharacterized LOC105247623 ncRNA 259300 Mm.138215 NM_153068 ENSMUSG00000074364 Ehd2 BC027084|C130052H20Rik - 7 A2|7 8.65 cM EH-domain containing 2 protein-coding 329993 Mm.297407 NM_001126316 ENSMUSG00000078504 Gm438 - - 4|4 E1 predicted gene 438 protein-coding 18081 Mm.18503 NM_013610 ENSMUSG00000037966 Ninj1 AU024536 - 13|13 A5 ninjurin 1 protein-coding 116950 Naad6 - - - Neu associated allelic deletion 6 other 100037410 Dbmc1 Dmc1 - - diabetes mRNA cluster 1 unknown 102636071 Gm33244 - - 6|6 predicted gene, 33244 protein-coding 61710 D5Mit317 - - 5 54.48 cM DNA segment, Chr 5, Massachusetts Institute of Technology 317 unknown 51847 D2Ertd92e - - 2 77.85 cM DNA segment, Chr 2, ERATO Doi 92, expressed unknown 61119 D2Mit499 - - - DNA Segment, Chr 2 Massachusetts Institute of Technology 499 unknown 102631863 Gm30089 - - 9 C|9 predicted gene, 30089 pseudo 667493 Gm13333 - - 2|2 A3 NSA2 ribosome biogenesis homolog pseudogene pseudo 634611 Mm.316249 Gm10760 - - 13|13 predicted gene 10760 protein-coding 100038385 F830115B05Rik - - - RIKEN cDNA F830115B05 gene ncRNA 16782 Mm.329272 NM_008485 ENSMUSG00000026479 Lamc2 AA589349 - 1 G3|1 65.26 cM laminin, gamma 2 protein-coding 73463 Mm.252811 NM_175200 ENSMUSG00000072295 Als2cr11 1700052H20Rik|4930408G06Rik - 1|1 C1.3 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human) protein-coding 768253 Mm.138617 LOC768253 - - 5|1 uncharacterized LOC768253 unknown 791299 Mm.297516 NR_028592 ENSMUSG00000059659 Gm10069 - - 6 F3|6 predicted gene 10069 ncRNA 100035685 Spmd3 - - - spermatogenesis defect 3 unknown 237823 Mm.340288 NM_001159519 ENSMUSG00000020899 Pfas 4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa - 11|11 B3 phosphoribosylformylglycinamidine synthase (FGAR amidotransferase) protein-coding 100862368 XM_017321195 ENSMUSG00000106627 Gm21680 - - 5 B1|5 predicted gene, 21680 protein-coding 100125291 Chldq8 - - - cholesterol and HDL QTL 8 unknown 233065 Mm.276277 NM_198027 ENSMUSG00000042831 Alkbh6 AI839550|Abh6|C130099A02 - 7|7 B1 alkB homolog 6 protein-coding 102639408 XR_873207 Gm35732 - - 13 A3.2|13 predicted gene, 35732 ncRNA 404245 Mrgpra12 MrgA12 - - MAS-related GPR, member A12 protein-coding 74400 Mm.159188 NM_028913 ENSMUSG00000055102 Zfp819 4930427I11Rik|4933405K07Rik - 7|7 B3 zinc finger protein 819 protein-coding 751524 NR_030437 ENSMUSG00000070136 Mir496a Mir496|Mirn496|mir-496a|mmu-mir-496|mmu-mir-496a - 12 F1|12 microRNA 496a ncRNA 66977 Mm.151315 NM_023284 ENSMUSG00000026683 Nuf2 2410003C07Rik|AU044112|C85691|Cdca1|NUF2R - 1|1 H2.3 NUF2, NDC80 kinetochore complex component protein-coding 105243440 XR_870879 Gm39365 - - 9 C|9 predicted gene, 39365 ncRNA 102640894 Gm16193 - - 8|8 23.89 cM predicted gene 16193 ncRNA 19771 Mm.41653 NM_020599 ENSMUSG00000039194 Rlbp1 3110056M11Rik|CRALBP - 7 D2|7 45.0 cM retinaldehyde binding protein 1 protein-coding 383629 Gm5266 EG383629 - 1|1 B 3-phosphoglycerate dehydrogenase pseudogene pseudo 27052 Mm.314046 NM_012054 ENSMUSG00000021322 Aoah 4930433E13Rik - 13|13 A2 acyloxyacyl hydrolase protein-coding 17427 Mm.387671 NM_008613 ENSMUSG00000032221 Mns1 AW546487 - 9|9 D meiosis-specific nuclear structural protein 1 protein-coding 105245740 XR_001781250 Gm41139 - - 14 C1|14 predicted gene, 41139 ncRNA 227545 Mm.133542 NM_144883 ENSMUSG00000045319 Proser2 5430407P10Rik|AU067770 - 2|2 A1 proline and serine rich 2 protein-coding 81910 Mm.13705 NM_024281 ENSMUSG00000027422 Rrbp1 1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180 - 2|2 G1 ribosome binding protein 1 protein-coding 73794 Mm.399080 4930402M22Rik - - 2|2 RIKEN cDNA 4930402M22 gene protein-coding 97884 Mm.21686 NM_178640 ENSMUSG00000039242 B3galnt2 A930105D20Rik|C80633|D230016N13Rik - 13|13 A1 UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2 protein-coding 105244635 Mm.406615 XR_867958 Ube2uos Gm12698 - 4 C6|4 45.74 cM ubiquitin-conjugating enzyme E2U (putative), opposite strand ncRNA 108263 Eef2-ps1 Ef2-ps - - eukaryotic translation elongation factor 2 pseudogene 1 pseudo 102632703 XR_386999 Gm30704 - - X C3|X predicted gene, 30704 ncRNA 114074 Axtofa3 - - - anxiety-open field activity 3 unknown 105244310 XR_866771 Gm39944 - - 2 F3|2 predicted gene, 39944 ncRNA 387589 Mm.298030 Ssxb12 - - XA1.1|X synovial sarcoma, X member B12 protein-coding 100312502 Vmn1r-ps56 - - 7|7 A1 vomeronasal 1 receptor, pseudogene 56 pseudo 18633 Mm.202782 NM_145122 ENSMUSG00000027222 Pex16 - - 2|2 E1 peroxisomal biogenesis factor 16 protein-coding 85056 D1Mit34 - - 1 67.5 cM DNA segment, Chr 1, Massachusetts Institute of Technology 34 unknown 105244106 XR_866089 Gm39779 - - 2 B|2 predicted gene, 39779 ncRNA 69572 Mm.34920 NM_027122 ENSMUSG00000019080 Mfsd3 2310010G13Rik - 15|15 D3 major facilitator superfamily domain containing 3 protein-coding 111599 Pmv57 Pmv-57 - - polytropic murine leukemia virus 57 other 108168931 XR_001784247 Gm46846 - - 4 A1|4 predicted gene, 46846 ncRNA 97301 C79744 - - - expressed sequence C79744 unknown 108167477 Gm46009 - - 7 A3|7 predicted gene, 46009 pseudo 666194 Gm13126 - - 4|4 E1 integrator complex subunit 5 pseudogene pseudo 52670 Mm.229207 NM_026682 ENSMUSG00000018727 Cpsf4l 0610010C04Rik|1500000C01Rik|D11Ertd636e - 11 E2|11 79.17 cM cleavage and polyadenylation specific factor 4-like protein-coding 553096 Mm.441684 LOC553096 - - - uncharacterized LOC553096 unknown 665089 Spr-ps1 EG665089|Sprp - 6|6 C3 sepiapterin reductase pseudogene 1 pseudo 675347 Gm20787 - - 17|17 predicted gene, 20787 pseudo 492868 Acsns2 - - 13 27.68 cM Angiostrongylus costaricensis nematode susceptibility 2 unknown 100312547 Gm11320 Vmn1r-ps118 - 13 A3.1|13 9.31 cM vomeronasal 1 receptor Vmn1r-ps118 pseudogene pseudo 78015 Mm.243839 NR_131106 ENSMUSG00000085740 4930505K14Rik - - 5|5 G3 RIKEN cDNA 4930505K14 gene ncRNA 105242946 XR_882092 Gm39017 - - 7 B5|7 predicted gene, 39017 ncRNA 100418025 Gm18953 - - 2|2 E1 protein tyrosine phosphatase, receptor type, J pseudogene pseudo 19554 Rb(4.17)13Lub Rb13Lub - - Robertsonian translocation, Chr 4 and 17, Lubeck 13 other 14735 Mm.1528 NM_008150 ENSMUSG00000031119 Gpc4 9530073D23Rik|AF311610|AI385680|AI661372|K-glypican - X A5|X 28.33 cM glypican 4 protein-coding 257986 Olfr1547-ps1 MOR0-13P - 2|2 E3 olfactory receptor 1547, pseudogene 1 pseudo 53885 Mm.210766 NM_016902 ENSMUSG00000027378 Nphp1 - - 2|2 F1 nephronophthisis 1 (juvenile) homolog (human) protein-coding 85197 D18Mit164 - - 18 4.65 cM DNA segment, Chr 18, Massachusetts Institute of Technology 164 unknown 100035050 Kdnw3 - - - kidney weight 3 unknown 21275 T(8A4;12D1)69Dn T((8A4;12D1)69Dn|T(8;12)69Dn|T69Dn - - reciprocal translocation, Chr 8, cytogenetic band A4; and Chr 12, cytogenetic band D1, Davisson 69 other 434264 Mm.359414 NM_001184980 ENSMUSG00000078799 Sult2a5 EG434264|Gm15438 - 7|7 A1 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 5 protein-coding 102632256 XM_017318655 LOC102632256 - - X D doublesex- and mab-3-related transcription factor C1-like protein-coding 110120544 LOC110120544 - - - VISTA enhancer mm1570 biological-region 66469 Mm.41868 NM_025582 ENSMUSG00000029059 Fam213b 2810405K02Rik|AI836168|PM/PGFS - 4|4 E2 family with sequence similarity 213, member B protein-coding 102641297 Mm.29830 LOC102641297 - - - radial spoke head protein 3 homolog B-like protein-coding 52669 D14Ertd611e - - 14 46.02 cM DNA segment, Chr 14, ERATO Doi 611, expressed unknown 100417166 Gm14097 - - 2|2 F2 armadillo repeat containing 1 pseudogene pseudo 632781 Gm7093 EG632781 - 12 A1.2|12 predicted gene 7093 pseudo 723929 NR_029759 ENSMUSG00000065425 Mir325 Mirn325|mmu-mir-325 - X D|X microRNA 325 ncRNA 100417459 Gm18621 - - 12|12 D3 motile sperm domain containing 3 pseudogene pseudo 30857 C77218 - - - EST C77218 unknown 100503703 Mm.483808 Gm19845 - - 14|14 60.34 cM predicted gene, 19845 unknown 61725 D5Mit281 - - 5 72.44 cM DNA segment, Chr 5, Massachusetts Institute of Technology 281 unknown 667449 Trav6-1 EG667449|Gm8639 - 14|14 C2 T cell receptor alpha variable 6-1 other 12364 Mm.42163 NM_009808 ENSMUSG00000025887 Casp12 - - 9 A1|9 2.46 cM caspase 12 protein-coding 75861 Mm.349600 NM_001145759 4930571K23Rik AI428146 - 7|7 F3 RIKEN cDNA 4930571K23 gene protein-coding 13244 Mm.29648 NM_007853 ENSMUSG00000038633 Degs1 AA536663|Degs|Des1|Mdes - 1|1 H5 delta(4)-desaturase, sphingolipid 1 protein-coding 102635824 Gm33069 - - 7 D1|7 predicted gene, 33069 pseudo 102635473 Gm32802 - - 10 D2|10 predicted gene, 32802 pseudo 53111 EC108RR - - - DNA segment, EC108RR unknown 70591 Mm.86860 NM_027472 ENSMUSG00000057181 5730455P16Rik - - 11|11 B5 RIKEN cDNA 5730455P16 gene protein-coding 102640293 Gm36398 - - Y|Y predicted gene, 36398 protein-coding 211499 Mm.260712 NM_173734 ENSMUSG00000033808 Tmem87a A930025J12Rik - 2|2 E5 transmembrane protein 87A protein-coding 73892 Mm.50199 XR_380819 ENSMUSG00000112753 4930423D24Rik - - 10|10 D2 RIKEN cDNA 4930423D24 gene ncRNA 102634995 Mm.220734 Gm32444 - - 3|3 predicted gene, 32444 ncRNA 100416460 Gm18123 - - 7|7 A1 zinc finger protein 84 pseudogene pseudo 112329 Tria2 - - 15 26.19 cM T cell receptor induced activation 2 unknown 62055 D6Mit391 - - 6 37.29 cM DNA segment, Chr 6, Massachusetts Institute of Technology 391 unknown 110008574 NR_146435 LOC110008574 - - - miR-302 host gene ncRNA 100526538 NR_037262 ENSMUSG00000093900 Mir669p-2 mmu-mir-669p-2 - 2 A1|2 8.22 cM microRNA 669p-2 ncRNA 100417872 Gm15240 - - X|X F5 predicted gene 15240 pseudo 108167404 XR_001778034 Gm45970 - - 7 A1|7 predicted gene, 45970 ncRNA 14686 Mm.439652 NM_008141 ENSMUSG00000009108 Gnat2 AW490837|Gnat-2|Gt-2|Tcalpha - 3 F2.3|3 46.83 cM guanine nucleotide binding protein, alpha transducing 2 protein-coding 433426 Mm.244381 NR_040639 ENSMUSG00000085014 Gm13490 - - 2|2 C1.1 predicted gene 13490 ncRNA 70898 Mm.27548 NR_045148 ENSMUSG00000089707 Slain1os 4921525B02Rik - 14 E2.3|14 SLAIN motif family, member 1, opposite strand ncRNA 100124465 NR_030601 ENSMUSG00000078031 Mir466d Mirn466d - 2 A1|2 microRNA 466d ncRNA 668068 Gm8957 - - 3 A1|3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 21439 tclTuw11 tcl-Tuw11 - - t-complex lethal Tuw11 unknown 22070 Mm.297482 NM_009429 ENSMUSG00000060126 Tpt1 TCTP|Trt|p21|p23 - 14 D3|14 40.29 cM tumor protein, translationally-controlled 1 protein-coding 101056015 Mm.447151 LOC101056015 - - - uncharacterized LOC101056015 protein-coding 102638365 Gm11869 - - 4|4 6.66 cM predicted gene 11869 pseudo 102640812 Gm36791 - - 15|15 predicted gene, 36791 pseudo 636915 Gm7192 EG636915 - 8 D1|8 RNA binding motif protein, X chromosome pseudogene pseudo 75984 Mm.421334 5031415H12Rik - - 17|17 RIKEN cDNA 5031415H12 gene protein-coding 102638571 XR_386908 Gm35105 - - X A1.2|X predicted gene, 35105 ncRNA 385377 Mm.327861 NM_001100461 ENSMUSG00000050424 Pnma5 mKIAA1934 - X|X A7.3 paraneoplastic antigen family 5 protein-coding 102635336 XR_382765 Gm32702 - - 13 D1|13 predicted gene, 32702 ncRNA 436405 Gm5768 EG436405 - 16 A3|16 stress-induced phosphoprotein 1 pseudogene pseudo 387141 NR_029739 ENSMUSG00000065529 Mir22 Mirn22|mmu-mir-22 - 11|11 B5 microRNA 22 ncRNA 436033 Gm16205 - - 8|8 A4 forkhead box N2 pseudogene pseudo 268379 Mm.39270 NM_178259 ENSMUSG00000004668 Abca13 9830132L24|A930002G16Rik|AI956815 - 11|11 A1 ATP-binding cassette, sub-family A (ABC1), member 13 protein-coding 105245293 XR_001779647 Gm40769 - - 10 D2|10 predicted gene, 40769 ncRNA 105244077 XR_865945 Gm39755 - - 2 A1|2 predicted gene, 39755 ncRNA 70701 Mm.38884 NM_001081205 ENSMUSG00000067219 Nipal1 3830408G10Rik|Npal1 - 5|5 C3.2 NIPA-like domain containing 1 protein-coding 68145 Mm.178684 NM_026576 ENSMUSG00000016984 Etaa1 5730466H23Rik|AA672646 - 11|11 A3.1 Ewing tumor-associated antigen 1 protein-coding 102634966 XR_382110 Gm32420 - - 13 A2-A3.1|13 predicted gene, 32420 ncRNA 66797 Mm.440084 NM_025771 ENSMUSG00000039419 Cntnap2 5430425M22Rik|Caspr2|mKIAA0868 - 6|6 B2.2-B2.3 contactin associated protein-like 2 protein-coding 74879 Mm.416924 NR_040736 ENSMUSG00000097651 4930461G14Rik - - 9|9 B RIKEN cDNA 4930461G14 gene ncRNA 407816 Mm.391606 BC023202 - - - cDNA sequence BC023202 protein-coding 65100 Mm.390761 NM_022987 ENSMUSG00000041703 Zic5 1700049L20Rik|Opr - 14|14 E5 zinc finger protein of the cerebellum 5 protein-coding 102634651 XR_387678 Gm32185 - - 5 F|5 predicted gene, 32185 ncRNA 77710 Mm.410773 NR_131095 4831407H17Rik - - 14|14 B RIKEN cDNA 4831407H17 gene ncRNA 102639671 XR_382320 Gm35928 - - 13 A5|13 predicted gene, 35928 ncRNA 22065 Mm.74363 NM_019510 ENSMUSG00000027716 Trpc3 Mwk|Trcp3|Trp3|Trrp3 - 3 B|3 17.93 cM transient receptor potential cation channel, subfamily C, member 3 protein-coding 100416794 Gm18256 - - 7|7 B3 E1A binding protein p300 pseudogene pseudo 100041666 Vmn1r-ps46 Gm3461 - 7|7 A1 vomeronasal 1 receptor, pseudogene 46 pseudo 66653 Mm.334467 NM_025686 ENSMUSG00000031487 Brf2 2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50 - 8|8 A2 BRF2, RNA polymerase III transcription initiation factor 50kDa subunit protein-coding 102642902 Mm.426052 LOC102642902 - - - uncharacterized LOC102642902 ncRNA 100628613 NR_039579 ENSMUSG00000093176 Mir5119 mmu-mir-5119|mu-mir-5119 - 11 D|11 61.75 cM microRNA 5119 ncRNA 100316701 NR_035474 ENSMUSG00000089570 Mir669m-1 mmu-mir-669m-1 - 2 A1|2 8.22 cM microRNA 669m-1 ncRNA 116524 Obq11 - - 5 11.93 cM obesity QTL 11 unknown 21753 Mm.436548 NM_011570 ENSMUSG00000029552 Tes D6Ertd352e|TESS|Tes1|Tes2|testin2 - 6 A2|6 7.67 cM testis derived transcript protein-coding 17627 Ms49 MMS49 - - minisatellites detected by probe MMS49 other 76012 Mm.488097 5830415B17Rik - - 6|6 RIKEN cDNA 5830415B17 gene protein-coding 226757 Mm.289082 NM_145514 ENSMUSG00000038733 Wdr26 1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7 - 1|1 H4 WD repeat domain 26 protein-coding 64451 Mm.33183 NM_001081419 ENSMUSG00000020231 Dip2a 4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184 - 10 C1|10 38.76 cM disco interacting protein 2 homolog A protein-coding 105244777 XR_868524 Gm40329 - - 5 G1.1|5 predicted gene, 40329 ncRNA 22381 Mm.512 NM_011712 ENSMUSG00000042712 Tceal9 AL024233|Wbp5 - X|X F1 transcription elongation factor A like 9 protein-coding 209760 Mm.69380 NM_172476 ENSMUSG00000042246 Tmc7 1700030H01Rik|C230064B05|C630024K23Rik - 7|7 F1-F2 transmembrane channel-like gene family 7 protein-coding 105243110 XR_870097 Gm39122 - - 8 A1.1|8 predicted gene, 39122 ncRNA 26951 Mm.24791 NM_012039 ENSMUSG00000032264 Zw10 6330566F14Rik|MmZw10 - 9|9 A5.3 zw10 kinetochore protein protein-coding 105242467 XM_011238412 Gm38717 - - 1 A1|1 predicted gene, 38717 protein-coding 27553 D5Buc6 241N21.SP6 - 5 37.35 cM DNA segment, Chr 5, Bucan 6 unknown 233005 Mm.291574 NM_001101467 ENSMUSG00000091867 Cyp2a22 EG233005 - 7|7 A3 cytochrome P450, family 2, subfamily a, polypeptide 22 protein-coding 380797 Mm.491093 Ighd IgD|Igh-5 - 12 F1|12 62.1 cM immunoglobulin heavy constant delta other 546949 Rpl23a-ps9 EG546949|Gm6001 - 7|7 B1 ribosomal protein L23A, pseudogene 9 pseudo 329731 Mm.389494 NM_183224 ENSMUSG00000055865 Fam19a3 7530404M11Rik|Sam3|TAFA3|Tafa-3 - 3|3 F2.2 family with sequence similarity 19, member A3 protein-coding 80284 Mm.139607 NM_030252 ENSMUSG00000042380 Smim12 BC003266 - 4|4 D2.2 small integral membrane protein 12 protein-coding 100036089 Gct6 - - - granulosa cell tumorigenesis 6 unknown 623809 Gm6452 EG623809 - 17|17 B1 non-SMC element 1 homolog pseudogene pseudo 85149 D2Mit319 - - 2 23.76 cM DNA segment, Chr 2, Massachusetts Institute of Technology 319 unknown 20924 Mm.285906 NM_013676 ENSMUSG00000003435 Supt5 AL033283|AL033321|AU019549|Spt5|Supt5h - 7 A3|7 16.68 cM suppressor of Ty 5 protein-coding 69783 Mm.459669 1600010F14Rik - - 1|1 RIKEN cDNA 1600010F14 gene protein-coding 59025 Mm.329277 NM_021522 ENSMUSG00000047879 Usp14 2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375 - 18 A1|18 4.91 cM ubiquitin specific peptidase 14 protein-coding 105242547 XR_868650 Gm38729 - - 5 G2|5 predicted gene, 38729 ncRNA 667758 Gm8796 EG667758 - 10 D1|10 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 319171 Mm.250564 NM_178185 ENSMUSG00000094777 Hist1h2ap Gm11276 - 13|13 A3.1 histone cluster 1, H2ap protein-coding 260399 Thypr3 - - 3 7.49 cM thymocyte proliferative response 3 unknown 380928 Mm.218981 NM_201529 ENSMUSG00000033060 Lmo7 C78582|FBXO20|Gm914|mKIAA0858 - 14 E2.3|14 50.9 cM LIM domain only 7 protein-coding 232367 Mm.469872 NM_001104642 ENSMUSG00000072778 Vmn2r27 EG232367 - 6|6 F2 vomeronasal 2, receptor27 protein-coding 68977 Mm.29230 NM_026897 ENSMUSG00000061046 Haghl 1500017E18Rik|2810014I23Rik|C330022E15Rik - 17|17 A3.3 hydroxyacylglutathione hydrolase-like protein-coding 100417170 Gm18435 - - 2|2 E1 nucleophosmin/nucleoplasmin 2 pseudogene pseudo 17227 Mm.439684 NM_010779 ENSMUSG00000061068 Mcpt4 MMCP-4|MMCP-4A|MMCP-4B|Mcp-4|Mcp4 - 14 C3|14 28.19 cM mast cell protease 4 protein-coding 102634432 Gm32015 - - 5|5 predicted gene, 32015 ncRNA 100126202 Mm.405592 9630029G12Rik - - - RIKEN cDNA 9630029G12 gene unknown 102465640 NR_106024 ENSMUSG00000098353 Mir7057 Gm27550|mmu-mir-7057 - 7|7 C microRNA 7057 ncRNA 78105 Mm.399086 NR_131760 ENSMUSG00000085418 Grip1os1 4930404E01Rik|4930483C13Rik - 10|10 D2 glutamate receptor interacting protein 1, opposite strand 1 ncRNA 74534 Mm.292812 8430428J23Rik - - 8|8 D3 RIKEN cDNA 8430428J23 gene protein-coding 26463 Ube2l3-ps1 Gm38517|UbcM4|Ubce7-ps1 - 3|3 A3 ubiquitin-conjugating enzyme E2L 3, pseudogene 1 pseudo 268729 Mm.206197 XM_017316244 ENSMUSG00000108841 Frmpd2 Gm1582|Gm626 - 14|14 B FERM and PDZ domain containing 2 protein-coding 102467351 n-TKctt25 n-Tk25 - 1 E4|1 nuclear encoded tRNA lysine 25 (anticodon TTT) tRNA 102634381 XR_382756 Gm31977 - - 13 C3|13 predicted gene, 31977 ncRNA 97547 Mm.401369 C81489 - - - expressed sequence C81489 unknown 102632836 Gm17147 - - 6 C1|6 30.11 cM predicted gene 17147 pseudo 382275 Mm.370361 NM_001025607 ENSMUSG00000079655 Gm5168 EG382275 - X A2|X predicted gene 5168 protein-coding 70359 Mm.142112 NM_032544 ENSMUSG00000007610 Gtpbp3 2410009F13Rik|AI607903 - 8|8 B3.3 GTP binding protein 3 protein-coding 74558 Mm.458429 NM_029000 ENSMUSG00000045868 Gvin1 9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1 - 7|7 E3 GTPase, very large interferon inducible 1 protein-coding 677423 Gm9715 - - 9|9 B meiotic nuclear divisions 1 homolog pseudogene pseudo 229512 Mm.439830 NM_173188 ENSMUSG00000001415 Smg5 BC024683|mKIAA1089 - 3|3 F1 Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) protein-coding 102633194 XR_385546 Gm31082 - - 17 B1|17 predicted gene, 31082 ncRNA 100043431 Mm.272675 Gm4430 - - 2 F1|2 predicted gene 4430 unknown 104063 Gtl9 - - - gene trap locus 9 unknown 17110 Mm.177539 NM_013590 ENSMUSG00000069515 Lyz1 Lyz|Lyzf3|Lzp-s - 10|10 D2 lysozyme 1 protein-coding 102635556 Gm32858 Gm7261 - 6|6 predicted gene, 32858 protein-coding 100093672 Trnan-auu - - - transfer RNA asparagine (anticodon AUU) tRNA 102633653 XR_378128 Gm31427 - - 6 G3|6 predicted gene, 31427 ncRNA 102635486 Gm32812 - - 3|3 predicted gene, 32812 ncRNA 320363 Mm.123343 NR_040624 ENSMUSG00000110874 D030045P18Rik - - 10|10 B2 RIKEN cDNA D030045P18 gene ncRNA 100035881 Lith23 - - 11 14.44 cM lithogenic gene 23 unknown 62395 D17Mit16 - - 17 17.98 cM DNA segment, Chr 17, Massachusetts Institute of Technology 16 unknown 19591 Rb(6.13)9Tu Rb9Tu - - Robertsonian translocation, Chr 6 and 13, Tubingen 9 other 224014 Mm.256131 NM_139232 ENSMUSG00000022788 Fgd4 9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6 - 16|16 A3 FYVE, RhoGEF and PH domain containing 4 protein-coding 97452 C78452 - - - expressed sequence C78452 unknown 100042742 Obox4-ps22 Gm4003 - 7 A2|7 oocyte specific homeobox 4, pseudogene 22 pseudo 319416 D930006K15Rik - - 16|16 RIKEN cDNA D930006K15 gene protein-coding 28043 D3Wsu174e - - 3 22.89 cM DNA segment, Chr 3, Wayne State University 174, expressed unknown 100416772 Gm18241 - - 12|12 A1.3 transcription factor 23 pseudogene pseudo 278676 Mm.34546 NM_194347 ENSMUSG00000050961 AY358078 - - 14|14 C1 cDNA sequence AY358078 protein-coding 100503395 Gm12313 - - 11|11 42.99 cM 39S ribosomal protein L42, mitochondrial-like pseudo 107018 Mm.44643 AW046287 - - - expressed sequence AW046287 unknown 75906 Mm.436785 NM_001081428 ENSMUSG00000019856 Fam184a 3110012E06Rik|4930438C08Rik|4930589M24Rik - 10|10 B3 family with sequence similarity 184, member A protein-coding 12522 Mm.57175 NM_009856 ENSMUSG00000015396 Cd83 - - 13 A4|13 21.6 cM CD83 antigen protein-coding 100035134 Gct7 - - 1 32.7 cM granulosa cell tumorigenesis 7 unknown 74341 Mm.280165 NR_027913 G630025P09Rik 4632403M07Rik - 11|11 B3 RIKEN cDNA G630025P09 gene ncRNA 72429 Mm.317801 NM_001033165 ENSMUSG00000070972 Dnajc25 2010109C08Rik|2010203O07Rik - 4|4 B3 DnaJ heat shock protein family (Hsp40) member C25 protein-coding 102636189 Mm.407146 XR_378722 Gm33326 Gm45547 - 8 A1.1|8 predicted gene, 33326 ncRNA 320062 Mm.440381 E130009g09rik - - 11|11 uncharacterized LOC320062 unknown 17644 Ms60 MMS60 - - minisatellites detected by probe MMS60 other 100416445 Gm18116 - - 12|12 B1 ribosomal protein L17 pseudogene pseudo 105245384 Gm40849 - - 12 A1.2|12 predicted gene, 40849 pseudo 53740 D1Byu25 D0Byu25 - - DNA segment, Chr 1, Brigham Young University 25 unknown 102032 Mm.378231 NM_001012667 ENSMUSG00000031534 Smim19 AI316807|BG694986|EST-c39 - 8|8 A2 small integral membrane protein 19 protein-coding 73649 Mm.45435 NM_028593 ENSMUSG00000027015 Cybrd1 2210407P13Rik|Dcytb - 2|2 C2 cytochrome b reductase 1 protein-coding 102632145 Gm21804 - - Y|Y predicted gene, 21804 protein-coding 77470 C030026O17Rik - - 2|2 RIKEN cDNA C030026O17 gene protein-coding 27829 D0Bac5 - - - DNA segment, Bulgarian Academy of Science 5 unknown 626889 Gm13106 - - 4|4 E1 predicted gene 13106 pseudo 61385 D5Mit122 - - 5 89.28 cM DNA segment, Chr 5, Massachusetts Institute of Technology 122 unknown 70357 Mm.252514 NM_027398 ENSMUSG00000053519 Kcnip1 KCHIP1|Kchip1.2 - 11|11 A4 Kv channel-interacting protein 1 protein-coding 100417922 Gm18899 - - 12|12 C3 eukaryotic translation initiation factor 5 pseudogene pseudo 52938 D.seq - - - DNA segment, D unknown 321004 9330197I21Rik - - 8|8 RIKEN cDNA 9330197I21 gene protein-coding 108167927 LOC108167927 - - 11 E1 non-histone chromosomal protein HMG-14 pseudogene pseudo 107538 Int53 Int-53 - - mammary tumor integration site 53 protein-coding 72144 Mm.482167 NM_028123 ENSMUSG00000029924 Slc37a3 2610507O21Rik|AU044904 - 6|6 B1 solute carrier family 37 (glycerol-3-phosphate transporter), member 3 protein-coding 105244264 XR_866639 Gm39905 - - 2 E3|2 predicted gene, 39905 ncRNA 100379665 Mm.153974 9330121J05Rik - - 3 E1|3 29.97 cM RIKEN cDNA 9330121J05 gene unknown 112423 Lrnx1 - - - learning contextual 1 unknown 105243972 XR_872336 Gm39672 - - 11 A4|11 predicted gene, 39672 ncRNA 116979 Morph3 - - - morphine antinociception 3 unknown 108168430 Gm46667 - - X A4|X 40S ribosomal protein S15a pseudogene pseudo 100503550 Gm19764 - - 6 C1|6 30.55 cM predicted gene, 19764 pseudo 30874 Mm.172634 C77488 - - - EST C77488 protein-coding 102637244 Gm13919 - - 2|2 54.13 cM predicted gene 13919 protein-coding 102632002 XR_373971 Gm30185 - - 2 A1|2 predicted gene, 30185 ncRNA 258632 Mm.271482 NM_146639 ENSMUSG00000075149 Olfr1138 MOR177-8 - 2|2 D olfactory receptor 1138 protein-coding 218699 Mm.29515 NM_145458 ENSMUSG00000033885 Pxk C230080L11Rik|D14Ertd813e|Monaka|Slob - 14 A1|14 4.7 cM PX domain containing serine/threonine kinase protein-coding 668458 Rab9b-ps1 EG668458|Gm9181 - X D|X RAB9B, member RAS oncogene family, pseudogene 1 pseudo 109423 Mol4 - - - modifier of LPS-response 4 unknown 103161 Mm.26513 NM_133997 ENSMUSG00000047631 Apof AI255964 - 10 D3|10 76.5 cM apolipoprotein F protein-coding 102637064 XR_389367 ENSMUSG00000104717 Gm33969 - - 5 E3|5 predicted gene, 33969 ncRNA 11977 Mm.254297 NM_009726 ENSMUSG00000033792 Atp7a MNK - X D|X 47.36 cM ATPase, Cu++ transporting, alpha polypeptide protein-coding 672230 Gm13254 - - 2|2 A1 predicted gene 13254 pseudo 100885832 NR_049193 ENSMUSG00000093599 Mir5620 Gm23572|mir-5620|mmu-mir-5620 - 7|7 A1 microRNA 5620 ncRNA 100862019 XM_017320493 Gm21404 - - 4 D2.2|4 predicted gene, 21404 protein-coding 109477 Hcbip1 - - - hexachlorobenzene induced porphyria 1 unknown 75161 Mm.50406 NM_175218 ENSMUSG00000051758 4930544M13Rik - - 13|13 D2.2 RIKEN cDNA 4930544M13 gene ncRNA 100034965 Bmd21 - - 10 70.36 cM bone mineral density 21 unknown 606534 Gm6065 EG606534|Gm5517|Ppia-ps7_184.1 - 7|7 A2 peptidylprolyl isomerase A pseudogene 7_184.1 pseudo 69583 Mm.8983 NM_023517 ENSMUSG00000089669 Tnfsf13 2310026N09Rik|April|Tall2|Tnlg7b|Trdl1 - 11|11 B3 tumor necrosis factor (ligand) superfamily, member 13 protein-coding 668386 Gm9142 EG668386 - 7|7 B1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 595138 Gm6043 Ppia-ps15 - 14|14 A3 peptidylprolyl isomerase A pseudogene 15 pseudo 110044 Hrs3 - - - mouse minor satellite DNA 3 other 105247180 XR_881476 Gm42323 - - 4 D2.3|4 predicted gene, 42323 protein-coding 352968 Mm.184163 NR_152134 D830050J10Rik - - 6|6 E3 RIKEN cDNA D830050J10 gene ncRNA 105243072 Gm39102 - - 7|7 predicted gene, 39102 ncRNA 75399 0610039G09Rik - - - RIKEN cDNA 0610039G09 gene protein-coding 105244767 Gm40319 - - 5 C1|5 predicted gene, 40319 pseudo 101055731 Mm.483766 XM_006523268 Gm29719 - - 17 A1|17 predicted gene, 29719 protein-coding 100316869 Gm17820 - - 12|12 A3 proline rich 11 pseudogene pseudo 12842 Mm.277735 NM_007742 ENSMUSG00000001506 Col1a1 Col1a-1|Cola-1|Cola1|Mov-13|Mov13 - 11 59.01 cM|11 D collagen, type I, alpha 1 protein-coding 665858 Mm.411658 NM_001324526 Gm7827 EG665858 - 8|8 B3.3 predicted gene 7827 protein-coding 105245038 Gm40549 - - 9|9 predicted gene, 40549 ncRNA 105243996 XR_865695 Gm39691 - - 1 H2.2|1 predicted gene, 39691 ncRNA 62304 D1Mit155 - - 1 98.2 cM DNA segment, Chr 1, Massachusetts Institute of Technology 155 unknown 102643016 XR_001783993 Gm38650 - - 3 G3|3 predicted gene, 38650 ncRNA 102467316 n-TGtcc2 n-Tg21 - 1 H3|1 nuclear encoded tRNA glycine 2 (anticodon TCC) tRNA 100042670 Rpl28-ps1 Gm15435 - 1|1 E3 ribosomal protein L28, pseudogene 1 pseudo 224997 Mm.311840 NM_027712 ENSMUSG00000003279 Dlgap1 4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162 - 17 E1.3|17 40.85 cM DLG associated protein 1 protein-coding 100035944 Asdq4 - - - atrial septal defect QTL 4 unknown 102467652 n-TMcat15 n-Tm15 - 13 A2|13 nuclear encoded tRNA methionine 15 (anticodon CAT) tRNA 105245346 XR_872324 Gm40818 - - 11 A3.3|11 predicted gene, 40818 ncRNA 13138 Mm.7524 NM_010017 ENSMUSG00000039952 Dag1 D9Wsu13e|DG|Dp427|Dp71 - 9 F1|9 59.08 cM dystroglycan 1 protein-coding 71123 4933411B09Rik - - 9|9 F3 RIKEN cDNA 4933411B09 gene protein-coding 102632614 Gm30641 - - 18|18 predicted gene, 30641 ncRNA 52161 D7Bir19e - - - DNA segment, Chr 7, Birkenmeier 19, expressed unknown 19703 Mm.236969 NM_023132 ENSMUSG00000031387 Renbp Age|Rnbp - X A7.3|X 37.49 cM renin binding protein protein-coding 102633556 Gm31352 - - 18|18 predicted gene, 31352 ncRNA 102632394 Mm.391881 XR_386302 Gm26910 - - 18 E1|18 predicted gene, 26910 ncRNA 102632562 XR_377167 Gm30603 - - 5 G2|5 predicted gene, 30603 ncRNA 654801 Mm.333548 NM_001039532 ENSMUSG00000043290 Zfp784 C730049F21Rik|Znf784 - 7|7 A1 zinc finger protein 784 protein-coding 192236 Mm.218381 NM_019424 ENSMUSG00000025188 Hps1 6030422N11Rik|BB405864|Gm21361|Hps|ep - 19 C3|19 36.56 cM HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 66060 Mm.272527 NM_001081365 ENSMUSG00000046727 Cystm1 0610010O12Rik - 18|18 B2 cysteine-rich transmembrane module containing 1 protein-coding 105245545 XM_017315700 Gm10323 - - 13 B3|13 34.54 cM predicted gene 10323 protein-coding 100042799 Gm12286 - - 11|11 B3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 67157 Mm.440552 NM_026005 ENSMUSG00000059482 2610301B20Rik AI428449 - 4|4 A1 RIKEN cDNA 2610301B20 gene protein-coding 434756 Mm.471848 NM_001033785 ENSMUSG00000036551 Akap14 - - X|X A3.3 A kinase (PRKA) anchor protein 14 protein-coding 102633914 XR_872552 Gm31624 - - 12 A1.3|12 predicted gene, 31624 ncRNA 268345 Mm.336242 NM_001025581 ENSMUSG00000035681 Kcnc2 AW047325|B230117I07|KShIIIA|Kv3.2 - 10 D2|10 60.3 cM potassium voltage gated channel, Shaw-related subfamily, member 2 protein-coding 61586 DXMit126 - - X 33.5 cM DNA segment, Chr X, Massachusetts Institute of Technology 126 unknown 63004 D14Mit268 - - 14 28.0 cM DNA Segment, Chr 14, Massachusetts Institute of Technology 268 unknown 102631714 XR_373966 Gm29984 - - 2 A1|2 predicted gene, 29984 ncRNA 61006 D4Mit135 - - 4 7.66 cM DNA segment, Chr 4, Massachusetts Institute of Technology 135 unknown 52677 D12Ertd673e - - 12 33.52 cM DNA segment, Chr 12, ERATO Doi 673, expressed unknown 777664 Ighd2-8 Gm16782 - 12|12 F1 immunoglobulin heavy diversity 2-8 other 328399 Mm.285300 A930018M24Rik 9330167E06|Gm1207 - 14|14 C1 RIKEN cDNA A930018M24 gene ncRNA 102633079 XR_386951 Gm30993 - - X A7.1|X predicted gene, 30993 ncRNA 103967 Mm.441620 NM_172646 ENSMUSG00000040265 Dnm3 9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820 - 1|1 H2.1 dynamin 3 protein-coding 73389 Mm.390461 NM_153198 ENSMUSG00000002996 Hbp1 1700058O05Rik|BE629963|C330012F01Rik|C86454 - 12|12 A3 high mobility group box transcription factor 1 protein-coding 320703 Mm.487546 NM_177234 B230340J04Rik - - X|X A7.3 RIKEN cDNA B230340J04 gene unknown 100042173 Mm.441799 NR_029471 Rps15a-ps6 Gm11968 - 11|11 A1 ribosomal protein S15A, pseudogene 6 pseudo 77976 Mm.25874 NM_001004363 ENSMUSG00000020032 Nuak1 AU014801|AW494241|B230104P22Rik|Omphk1 - 10|10 C1 NUAK family, SNF1-like kinase, 1 protein-coding 100503961 Mm.136732 NR_045048 ENSMUSG00000112164 Gm19990 - - 12 C1|12 24.27 cM predicted gene, 19990 ncRNA 665622 Mm.471247 NM_001110555 ENSMUSG00000069303 Hist1h2br Gm11277 - 13|13 A3.1 histone cluster 1 H2br protein-coding 71240 Mm.190450 NM_001081434 ENSMUSG00000038534 Osbpl7 4933437E18Rik - 11|11 D oxysterol binding protein-like 7 protein-coding 105247052 XR_880875 Gm42228 - - 5 A3|5 predicted gene, 42228 ncRNA 105246353 XR_877115 Gm41653 - - 17 E5|17 predicted gene, 41653 ncRNA 77203 9330159N22Rik - - 13|13 RIKEN cDNA 9330159N22 gene protein-coding 73747 Mm.284114 NM_028637 ENSMUSG00000044991 1110034G24Rik - - 2 F2|2 RIKEN cDNA 1110034G24 gene protein-coding 61016 D5Mit226 - - 5 6.6 cM DNA segment, Chr 5, Massachusetts Institute of Technology 226 unknown 546736 Gm5976 EG546736 - 1|1 C1.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 213696 Mm.247121 NM_145395 ENSMUSG00000027224 Duoxa1 BC019755|Nip|Nip1 - 2|2 E5 dual oxidase maturation factor 1 protein-coding 111457 Rnr18 - - - ribosomal RNA, Chr 18 cluster other 329273 C130058N19 - - 1|1 G3 uncharacterized protein C130058N19 protein-coding 105245724 XR_874513 Gm41130 - - 14 B|14 predicted gene, 41130 ncRNA 677296 Mm.439612 NM_001164725 ENSMUSG00000070504 Fcrl6 FcRH6|mIFGP6|moFcRH6 - 1|1 H3 Fc receptor-like 6 protein-coding 100473 Mm.393171 NR_028391 ENSMUSG00000085041 BB031773 - - 4|4 C6 expressed sequence BB031773 ncRNA 13855 Mm.139695 NM_010148 ENSMUSG00000001036 Epn2 9530051D10Rik|AA536924|Ibp2 - 11|11 B2 epsin 2 protein-coding 20397 Mm.412319 NM_009163 ENSMUSG00000020097 Sgpl1 AI428538|D10Xrf456|S1PL|Spl - 10 B4|10 32.14 cM sphingosine phosphate lyase 1 protein-coding 100039086 XM_001472223 Gm15032 - - X|X F2 predicted gene 15032 protein-coding 114720 Skull12 QTL-S9.1 - 9 20.76 cM skull morphology 12 unknown 78215 Mm.243885 NR_040575 4930578N18Rik - - 16|16 C3.1 RIKEN cDNA 4930578N18 gene ncRNA 15564 Mm.4833 NM_010483 ENSMUSG00000050534 Htr5b 5-Ht5b - 1 E2.3|1 52.98 cM 5-hydroxytryptamine (serotonin) receptor 5B protein-coding 102633549 Gm31347 - - 16|16 predicted gene, 31347 pseudo 102633010 Mm.393824 XR_866434 Gm30940 - - 2 C3|2 predicted gene, 30940 ncRNA 102467340 n-TLtag2 n-Tl28 - 14 C1|14 nuclear encoded tRNA leucine 2 (anticodon TAG) tRNA 242915 Mm.332287 NM_001167879 ENSMUSG00000044576 Garem2 Fam59b|Gareml|Gm444 - 5|5 B1 GRB2 associated regulator of MAPK1 subtype 2 protein-coding 12299 Mm.57093 NM_007582 ENSMUSG00000020722 Cacng1 - - 11|11 E1 calcium channel, voltage-dependent, gamma subunit 1 protein-coding 28166 DYzEms19 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 19 unknown 102633755 XR_381063 Gm31505 - - 11 A3.1|11 predicted gene, 31505 ncRNA 387519 Tas2r141-ps4 Tas2r41 - 6|6 G1 taste receptor, type 2, member 141, pseudogene 4 pseudo 75080 Mm.444726 4930518C09Rik - - 5|5 RIKEN cDNA 4930518C09 gene protein-coding 380824 Ighv1-66 Gm16901 - 12|12 F2 immunoglobulin heavy variable 1-66 other 68427 Mm.192375 NM_026721 ENSMUSG00000002105 Slc39a13 1100001L14Rik|AA387663|ZIP-13|ZIP13 - 2|2 E1 solute carrier family 39 (metal ion transporter), member 13 protein-coding 62564 D12Mit128 - - 12 33.52 cM DNA segment, Chr 12, Massachusetts Institute of Technology 128 unknown 19626 Rb(8.9)8Mpl Rb8Mpl - - Robertsonian translocation, Chr 8 and 9, Montpellier 8 other 98825 AA939944 - - - expressed sequence AA939944 unknown 319732 Mm.447991 D230050J18Rik - - X|X RIKEN cDNA D230050J18 gene protein-coding 102631775 Gm21198 - - Y|Y predicted gene, 21198 protein-coding 108296 Ms6X Ms6-X - - minisatellite 6-X other 57742 Mm.389615 NM_021304 ENSMUSG00000006638 Abhd1 LABH-1|LABH1 - 5|5 B1 abhydrolase domain containing 1 protein-coding 94253 Mm.125298 NM_153130 ENSMUSG00000021301 Hecw1 9330116H24Rik|AV273951|E130207I19Rik|Nedl1 - 13 A1|13 5.29 cM HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 105246195 XR_876413 Gm41527 - - 17 A1|17 predicted gene, 41527 ncRNA 493083 Scon2 - - 4 82.64 cM sucrose consumption 2 unknown 13526 Mm.67403 NM_010086 ENSMUSG00000046723 Adam24 Dtgn5 - 8|8 A4 a disintegrin and metallopeptidase domain 24 (testase 1) protein-coding 102636164 Mm.430078 XR_386884 Gm14502 - - X A1.1|X 4.01 cM predicted gene 14502 ncRNA 100038830 Gm1972 - - 10 A3|10 UL16 binding protein 1 pseudogene pseudo 102637216 XR_387717 Gm34086 - - 5 F|5 predicted gene, 34086 ncRNA 666431 Gm8101 EG666431 - 1|1 H4 predicted gene 8101 pseudo 105245524 Gm40970 - - 13|13 predicted gene, 40970 ncRNA 109280030 LOC109280030 Mm244 - - VISTA enhancer mm244 biological-region 271221 Mm.320280 NM_198642 ENSMUSG00000034959 Rubcnl 5031414D18Rik|Gm744|Gm911|Kiaa0226l - 14|14 D3 RUN and cysteine rich domain containing beclin 1 interacting protein like protein-coding 100038472 Gm10469 - - - predicted gene 10469 protein-coding 669291 Gm15363 - - X A7.3|X predicted gene 15363 pseudo 73074 Mm.29317 2900086B20Rik AI662504 - - RIKEN cDNA 2900086B20 gene protein-coding 67053 Mm.210048 NM_025938 ENSMUSG00000023156 Rpp14 2610511E03Rik|AA682089 - 14|14 A1 ribonuclease P 14 subunit protein-coding 105245479 Gm40927 - - 13|13 predicted gene, 40927 ncRNA 100271704 Mm.366664 NM_001163772 ENSMUSG00000091034 Gm17660 Scpppq1 - 5 E5|5 50.54 cM predicted gene, 17660 protein-coding 245174 Mm.378428 NM_001142411 ENSMUSG00000060336 Zfp937 EG245174|Gm4979|ZIPO-I - 2|2 G3 zinc finger protein 937 protein-coding 75477 Mm.432537 NM_029303 ENSMUSG00000044444 Pfn3 1700012P12Rik - 13 B1|13 30.06 cM profilin 3 protein-coding 108167564 XR_001778732 LOC108167564 - - 8 E2 uncharacterized LOC108167564 ncRNA 68177 Mm.22758 NM_026598 ENSMUSG00000021928 Ebpl 5730442K12Rik|EBRP - 14|14 D1 emopamil binding protein-like protein-coding 27049 Mm.219460 NM_012051 ENSMUSG00000003382 Etv3 AI414410|METS|Pe1 - 3|3 F1 ets variant 3 protein-coding 100417467 Gm18629 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 105244487 Mm.395027 XR_867415 LOC105244487 - - 3 F1 uncharacterized LOC105244487 ncRNA 21106 T(17;18)4Gso T4Gso - - reciprocal translocation, Chr 17 and 18, Generoso 4 other 665041 Gm7459 EG665041 - 15|15 B3.2 eukaryotic translation initiation factor 2, subunit 1 alpha pseudogene pseudo 14601 Mm.389327 NM_010285 ENSMUSG00000027643 Ghrh GRF|Ghrf - 2 H1|2 78.25 cM growth hormone releasing hormone protein-coding 102638740 Gm35232 - - 18 A1|18 predicted gene, 35232 pseudo 75330 Mm.326776 NR_126451 ENSMUSG00000106506 4930558F17Rik - - 5 A1|5 RIKEN cDNA 4930558F17 gene ncRNA 108418 Xmmv25 Env-25|Xmmv-25 - - xenotropic-MCF leukemia virus 25 other 12785 Mm.290251 NM_013493 ENSMUSG00000030057 Cnbp AA408710|Cnbp1|Znf9 - 6|6 D1 cellular nucleic acid binding protein protein-coding 100124588 Vmn2r-ps151 - - Y|Y C1 vomeronasal 2, receptor, pseudogene 151 pseudo 56175 Mm.97885 NM_019517 ENSMUSG00000040605 Bace2 1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP - 16|16 C4 beta-site APP-cleaving enzyme 2 protein-coding 100504586 Mm.86217 NR_045008 ENSMUSG00000111080 Gm20300 - - 10 A4|10 17.1 cM predicted gene, 20300 ncRNA 76633 Mm.489898 NM_028275 ENSMUSG00000063458 Lrmda 1700112E06Rik|2700009F18Rik - 14|14 A3 leucine rich melanocyte differentiation associated protein-coding 19802 Rn4.5s-ps3 - - 13|13 B1 4.5s RNA, pseudogene 3 pseudo 723947 NR_029753 ENSMUSG00000065536 Mir98 Mirn98|mir-98|mmu-mir-98 - X|X F3 microRNA 98 ncRNA 21366 Mm.395650 NM_009320 ENSMUSG00000030096 Slc6a6 AA589629|C80501|Taut - 6 D1|6 40.73 cM solute carrier family 6 (neurotransmitter transporter, taurine), member 6 protein-coding 108168603 XM_017318809 LOC108168603 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 67459 Mm.263464 NM_026171 ENSMUSG00000026516 Nvl 1200009I24Rik - 1|1 H4 nuclear VCP-like protein-coding 100039023 Gm15014 - - X|X F2 predicted gene 15014 pseudo 100504023 Gm13553 - - 2|2 18.42 cM predicted gene 13553 ncRNA 333048 Mm.332586 NM_001033428 ENSMUSG00000066964 Tmem211 Gm854 - 5|5 F transmembrane protein 211 protein-coding 70258 Mm.373821 XR_140695 1500035N22Rik - - 5|5 A3 RIKEN cDNA 1500035N22 gene unknown 105245855 XR_874953 Gm41244 - - 14 E4|14 predicted gene, 41244 ncRNA 71978 Mm.273997 NM_028032 ENSMUSG00000022052 Ppp2r2a 2410004D02Rik|mKIAA1541 - 14|14 D1 protein phosphatase 2, regulatory subunit B, alpha protein-coding 100416308 Gm18026 - - 12|12 A3 predicted gene, 18026 pseudo 66447 Mm.218286 NM_025569 ENSMUSG00000026688 Mgst3 2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III - 1|1 H2.3 microsomal glutathione S-transferase 3 protein-coding 100316668 NR_035417 ENSMUSG00000080657 Mir669i Mirn669i|mir-669i|mmu-mir-669i - 2 A1|2 8.22 cM microRNA 669i ncRNA 381853 Mm.333633 NM_001080815 ENSMUSG00000030406 Gipr GIP-R|Gm1081|Gm160 - 7|7 A3 gastric inhibitory polypeptide receptor protein-coding 224065 Mm.326918 NM_198166 ENSMUSG00000056423 Uts2b Gm538|U2B|Urp|Uts2d - 16|16 B2 urotensin 2B protein-coding 102637904 XR_001785052 Gm34600 - - 5 B1|5 predicted gene, 34600 ncRNA 320657 C430019F06Rik - - 17|17 RIKEN cDNA C430019F06 gene protein-coding 20859 Mm.260026 NM_001111296 ENSMUSG00000078798 Sult2a1 ST2A1|Std|Sth1|mSTa1 - 7 A1|7 8.02 cM sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 protein-coding 620253 Mm.390964 NM_001077633 ENSMUSG00000057417 Dcpp3 Dcpp-3|EG620253|SPT-3 - 17|17 A3.3 demilune cell and parotid protein 3 protein-coding 61592 D9Mit281 - - 9 71.32 cM DNA segment, Chr 9, Massachusetts Institute of Technology 281 unknown 20224 Mm.391794 NM_009120 ENSMUSG00000020088 Sar1a 1600019H17Rik|Sara|Sara1 - 10|10 B4 secretion associated Ras related GTPase 1A protein-coding 100042881 Mm.4711 NM_001270511 ENSMUSG00000091987 Gm10352 - - Y A1|Y predicted gene 10352 protein-coding 112029 Bw14 - - - body weight QTL 14 unknown 60694 D4Mit7 - - 4 34.92 cM DNA segment, Chr 4, Massachusetts Institute of Technology 7 unknown 72252 Mm.87446 NR_003953 ENSMUSG00000038165 1700022A21Rik - - 5|5 A3 glycerol-3-phosphate dehydrogenase 1-like pseudogene pseudo 100035642 Idd25 - - 4 66.32 cM insulin dependent diabetes susceptibility 25 unknown 12492 Mm.297964 NM_007644 ENSMUSG00000029426 Scarb2 9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85 - 5|5 E2 scavenger receptor class B, member 2 protein-coding 12525 Mm.1858 NM_009857 ENSMUSG00000053977 Cd8a BB154331|Ly-2|Ly-35|Ly-B|Lyt-2 - 6 C1|6 32.14 cM CD8 antigen, alpha chain protein-coding 73692 Mm.164436 NM_001162906 ENSMUSG00000039801 2410089E03Rik 4732468D17Rik|Hug|Jbts17|b2b012Clo - 15|15 A1 RIKEN cDNA 2410089E03 gene protein-coding 105243503 Gm39405 - - 9|9 predicted gene, 39405 ncRNA 102637510 XR_386897 Gm34301 - - X A1.1|X predicted gene, 34301 ncRNA 100041286 Mm.459507 NR_045893 ENSMUSG00000085156 Snhg15 Gm11974 - 11|11 A1 small nucleolar RNA host gene 15 ncRNA 100048895 Mm.471074 NR_028442 9330020H09Rik - - 15 F1|15 RIKEN cDNA 9330020H09 gene ncRNA 102632787 XR_381054 Gm30770 - - 11 A2|11 predicted gene, 30770 ncRNA 66617 Mm.33167 NM_170592 ENSMUSG00000026857 Ntmt1 2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A - 2|2 B N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 215476 Mm.248721 NM_194340 ENSMUSG00000054280 Prr14l 6030436E02Rik|C330019G07Rik|Prl14l - 5|5 B1 proline rich 14-like protein-coding 117111 D12Pgn6 - - - DNA segment, Chr 12, Paigen 6 unknown 104000 Priap1 - - - priapism 1 protein-coding 100862324 XM_003689246 ENSMUSG00000079774 LOC100862324 - - - protein FAM205A protein-coding 626682 Mm.480302 NM_001177523 ENSMUSG00000074434 Defa28 EG626682|Gm6696 - 8|8 A2 defensin, alpha, 28 protein-coding 330450 Mm.447274 NM_178797 ENSMUSG00000030303 Far2 A230046P18|AW048109|BC055759|Mlstd1 - 6|6 G3 fatty acyl CoA reductase 2 protein-coding 105245470 Gm40919 - - 13|13 predicted gene, 40919 ncRNA 70370 Mm.5107 NM_024237 ENSMUSG00000027386 Fbln7 1600015H20Rik|AI464334|TM14 - 2|2 F1 fibulin 7 protein-coding 97788 C76940 - - - expressed sequence C76940 unknown 380712 Mm.41393 NM_027249 ENSMUSG00000038217 Tlcd2 - - 11|11 B5 TLC domain containing 2 protein-coding 236219 Mm.302175 NM_153523 ENSMUSG00000095821 Tcstv3 - - 13 D2.3|13 2-cell-stage, variable group, member 3 protein-coding 102639202 Gm35564 - - 8|8 predicted gene, 35564 ncRNA 320380 A230071A22Rik - - 6|6 RIKEN cDNA A230071A22 gene protein-coding 102638010 XR_384825 Gm34680 - - 16 B3|16 predicted gene, 34680 ncRNA 258580 Mm.377576 NM_146587 ENSMUSG00000050128 Olfr1023 MOR196-3 - 2|2 D olfactory receptor 1023 protein-coding 217480 Mm.126525 NM_178681 ENSMUSG00000036095 Dgkb 6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718 - 12|12 A3 diacylglycerol kinase, beta protein-coding 100462955 Gm13687 - - 2 C3|2 48.2 cM mitochondrial ribosomal protein S36 pseudogene pseudo 22652 Mm.146 NM_011746 ENSMUSG00000070527 Mkrn3 D7H15S9-1|Zfp127 - 7 C|7 34.37 cM makorin, ring finger protein, 3 protein-coding 100035955 Gwth3 - - - growth traits 3 unknown 381259 Mm.261275 NM_001033449 ENSMUSG00000038079 Tmem237 AI853305|Als2cr4|Gm972 - 1|1 C1.3 transmembrane protein 237 protein-coding 62292 D19Mit65 - - 19 33.55 cM DNA segment, Chr 19, Massachusetts Institute of Technology 65 unknown 105246534 Gm41808 - - 19|19 predicted gene, 41808 ncRNA 109349 Mm.314080 NM_175427 ENSMUSG00000009216 Fam163b C630035N08Rik - 2|2 A3 family with sequence similarity 163, member B protein-coding 73186 3110045A19Rik - - 15|15 RIKEN cDNA 3110045A19 gene protein-coding 28098 DYzEms2 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 2 unknown 15488 Mm.277857 NM_008292 ENSMUSG00000024507 Hsd17b4 17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2 - 18|18 D1 hydroxysteroid (17-beta) dehydrogenase 4 protein-coding 213603 Mm.33062 NM_145394 ENSMUSG00000039865 Slc44a3 BC010552 - 3|3 G1 solute carrier family 44, member 3 protein-coding 667563 Gm8705 EG667563 - 15|15 B3.1 SET pseudogene pseudo 100764 Mm.9654 NM_029096 ENSMUSG00000029600 Rita1 1110008J03Rik|AI853657|C86297|Rita - 5|5 F RBPJ interacting and tubulin associated 1 protein-coding 100039106 Gm2048 - - 14|14 A3 potassium channel, subfamily K, member 17 pseudogene pseudo 108168462 LOC108168462 - - X A4 40S ribosomal protein S27-like pseudogene pseudo 547267 Gm6030 EG547267|Gm41456 - 16|16 B5 predicted gene 6030 unknown 76854 Mm.389706 NM_029771 ENSMUSG00000053647 Gper1 6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30 - 5|5 G2 G protein-coupled estrogen receptor 1 protein-coding 102638882 XM_006521619 ENSMUSG00000109179 Gm35339 Wdr97 - 15 D3|15 predicted gene, 35339 protein-coding 545466 Mm.330618 XR_375033 LOC545466 - - 2|2 F3 uncharacterized LOC545466 unknown 102635253 XR_382679 Gm32639 - - 13 C3|13 predicted gene, 32639 ncRNA 492884 Cd4ts3 - - 8 43.17 cM CD4 T cell subset 3 unknown 61763 D3Mit295 - - 3 18.74 cM DNA segment, Chr 3, Massachusetts Institute of Technology 295 unknown 107573 Tcrg-C1 Cgamma1|Gm17004|TRGC1 - 13 A2|13 T cell receptor gamma, constant 1 other 11722 Mm.439727 NM_007446 ENSMUSG00000074264 Amy1 Amy-1|Amy1a|C030014B17Rik - 3 F3|3 49.35 cM amylase 1, salivary protein-coding 503849 Ear-ps12 - - 14|14 C1 eosinophil-associated, ribonuclease A family, pseudogene 12 pseudo 61505 D8Mit109 - - 8 46.96 cM DNA segment, Chr 8, Massachusetts Institute of Technology 109 unknown 19183 Mm.18344 NM_008949 ENSMUSG00000019303 Psmc3ip C79099|GT198|HOP2|Tbpip - 11|11 D proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein protein-coding 108334 Emv51 Emv-51 - - endogenous ecotropic MuLV 51 other 61601 D9Mit266 - - 9 42.67 cM DNA segment, Chr 9, Massachusetts Institute of Technology 266 unknown 320766 E030022I16Rik - - 9|9 RIKEN cDNA E030022I16 gene ncRNA 17301 Mm.7997 NM_008593 ENSMUSG00000055210 Foxd2 AI426778|Mf2 - 4 D1|4 52.73 cM forkhead box D2 protein-coding 13131 Mm.289682 NM_010014 ENSMUSG00000028519 Dab1 AI956902|C630028C02Rik|scm|scr|scrambler|yot - 4 C6|4 47.79 cM disabled 1 protein-coding 62000 D8Mit345 - - 8 37.19 cM DNA segment, Chr 8, Massachusetts Institute of Technology 345 unknown 272790 Mm.165776 NM_053206 ENSMUSG00000031224 Magee2 9630059J11Rik|BB131182|Mage-e2 - X|X D melanoma antigen, family E, 2 protein-coding 105242719 XR_869272 Gm38861 - - 6 D1|6 predicted gene, 38861 ncRNA 105243221 XR_878939 Gm39200 - - 8 C1|8 predicted gene, 39200 ncRNA 21848 Mm.41063 NM_145076 ENSMUSG00000029833 Trim24 A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a - 6|6 B1 tripartite motif-containing 24 protein-coding 20504 Mm.2656 NM_009198 ENSMUSG00000021335 Slc17a1 NAPI-1|Napi1|Npt1 - 13 A3.1|13 9.97 cM solute carrier family 17 (sodium phosphate), member 1 protein-coding 110887 Gsta-rs1 - - - glutathione S-transferase, alpha (Ya), related sequence 1 protein-coding 635756 Gm7166 - - 3 F1|3 predicted gene 7166 protein-coding 665667 Gm7741 EG665667 - 3|3 B glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 85167 DXMit226 - - X 24.88 cM DNA Segment, Chr X, Massachusetts Institute of Technology 226 unknown 69341 Mm.395378 1700010B09Rik - - 14|14 RIKEN cDNA 1700010B09 gene protein-coding 102633339 Gm12786 - - 4|4 49.99 cM predicted gene 12786 ncRNA 108168545 XM_017318735 ENSMUSG00000095793 LOC108168545 - - Y B X-linked lymphocyte-regulated protein PM1-like protein-coding 27426 Mm.215641 NM_013796 ENSMUSG00000023143 Nagpa AI596180|UCE - 16|16 A1 N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase protein-coding 54672 Mm.27995 NM_173036 ENSMUSG00000060470 Adgrg3 A030001G24Rik|AW214383|Gpr97|Pb1|Pb99 - 8|8 C5 adhesion G protein-coupled receptor G3 protein-coding 101966 Mm.200723 NM_001007571 ENSMUSG00000019362 D8Ertd738e AA589584 - 8 C2|8 40.72 cM DNA segment, Chr 8, ERATO Doi 738, expressed protein-coding 100041381 Gm11667 - - 11|11 E1 predicted gene 11667 pseudo 68870 Mm.273318 NM_001033874 ENSMUSG00000026807 Ak8 1190002A17Rik|AK 8 - 2|2 A3 adenylate kinase 8 protein-coding 75641 Mm.330409 NM_183112 ENSMUSG00000044916 1700029I15Rik 1700021K07Rik - 2|2 E1 RIKEN cDNA 1700029I15 gene protein-coding 17164 Mm.221235 NM_008551 ENSMUSG00000016528 Mapkapk2 AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1 - 1|1 E4 MAP kinase-activated protein kinase 2 protein-coding 665728 Gm12738 - - 4|4 C7 ribosomal protein L9 pseudogene pseudo 21985 Mm.371590 NM_009412 ENSMUSG00000027506 Tpd52 AI043038|mD52 - 3|3 A1 tumor protein D52 protein-coding 102635955 Mm.403384 XR_375027 Gm14062 - - 2 F3|2 68.1 cM predicted gene 14062 ncRNA 105244460 Gm40065 - - 3|3 predicted gene, 40065 protein-coding 100039871 Gm2468 - - 12|12 C1 predicted gene 2468 pseudo 100502641 Gm17511 - - 7 F3|7 69.44 cM ribosomal protein, large, P1 pseudogene pseudo 207495 Mm.309647 NM_177580 ENSMUSG00000018126 Baiap2l2 BC048937 - 15|15 E1 BAI1-associated protein 2-like 2 protein-coding 668938 Gm14239 - - 2|2 H1 carnitine deficiency-associated gene expressed in ventricle 3 pseudogene pseudo 108168744 XR_001783276 Gm46734 - - 2 B|2 predicted gene, 46734 ncRNA 629866 Ighv1-16 EG629866|Gm7012 - 12|12 F2 immunoglobulin heavy variable 1-16 other 102637943 XR_866804 Gm34629 - - 2 G1|2 predicted gene, 34629 ncRNA 72531 2610317O13Rik - - 18|18 RIKEN cDNA 2610317O13 gene protein-coding 258498 Mm.377537 NM_146505 ENSMUSG00000048299 Olfr148 M30|MOR224-4 - 9|9 A5.1 olfactory receptor 148 protein-coding 75782 Mm.199698 NM_027448 ENSMUSG00000032258 Lca5 4930431B11Rik|5730406O13Rik|AV274874|ORF64 - 9|9 E2 Leber congenital amaurosis 5 (human) protein-coding 102633760 XR_391639 Gm31510 Gm44558 - 7 D2|7 predicted gene, 31510 ncRNA 171200 Mm.377178 NM_134182 ENSMUSG00000115799 Vmn1r19 V1rc27 - 6|6 B3 vomeronasal 1 receptor 19 protein-coding 105246160 Gm41494 - - 16|16 predicted gene, 41494 ncRNA 108442 Xmmv66 Xmmv-66|Xp-25 - - xenotropic-MCF leukemia virus 66 other 100628567 NR_039538 ENSMUSG00000104794 Mir28c mmu-mir-28c - 15 C|15 21.15 cM microRNA 28c ncRNA 237082 Mm.41899 NM_172782 ENSMUSG00000042271 Nxt2 6330587F24Rik|AI787442|P15-2 - X|X F2 nuclear transport factor 2-like export factor 2 protein-coding 223337 Mm.422853 NM_144845 ENSMUSG00000049152 Ugt3a2 AI313915 - 15|15 A1 UDP glycosyltransferases 3 family, polypeptide A2 protein-coding 239796 Mm.155887 NM_177718 ENSMUSG00000051065 Mb21d2 1600021P15Rik|A430031N04|C87006 - 16|16 B2 Mab-21 domain containing 2 protein-coding 100038376 Mm.388318 Gm10876 - - - predicted gene 10876 unknown 100415954 Gm14741 - - X|X C1 aprataxin pseudogene pseudo 100093669 Trnah-gug - - - transfer RNA histidine(anticodon GUG) tRNA 22789 Mm.4644 NM_009581 ENSMUSG00000042554 Zp3r AV264399|SP56 - 1 E4|1 56.89 cM zona pellucida 3 receptor protein-coding 100035290 Bmd1c BMD1-3 - - bone mineral density 1c unknown 62739 D18Mit172 - - 18 12.08 cM DNA segment, Chr 18, Massachusetts Institute of Technology 172 unknown 102634307 Gm12235 - - 11 B1.3|11 33.08 cM predicted gene 12235 pseudo 105244692 Gm40254 - - 4|4 predicted gene, 40254 ncRNA 107976 Mm.482126 NM_144541 ENSMUSG00000052139 Babam2 6030405P19Rik|AI429776|B830038C02Rik|Bre - 5|5 B1 BRISC and BRCA1 A complex member 2 protein-coding 102635074 XR_001780324 Gm32502 - - 11 D|11 predicted gene, 32502 ncRNA 114829 Rencd - - 6 77.64 cM renal cystic disease severity unknown 114600 Mm.428480 NM_053251 Gm4736 EG114600|Mp4|Mp6 - 6 G1|6 predicted gene 4736 protein-coding 723864 NR_029947 ENSMUSG00000065579 Mir425 Mirn425|mmu-mir-425 - 9|9 F2 microRNA 425 ncRNA 100125246 Trbd1 Gm16647|Tcrb-D1 - 6 19.69 cM|6 B1 T cell receptor beta, D region 1 other 12040 Mm.12819 NM_199195 ENSMUSG00000032263 Bckdhb BCKDE1B|BCKDH E1-beta - 9|9 E2 branched chain ketoacid dehydrogenase E1, beta polypeptide protein-coding 100041438 Gm3339 - - 14 A1|14 predicted gene 3339 pseudo 210373 Mm.255451 XR_001780994 A530095I07Rik Gm530 - 13|13 B3 RIKEN cDNA A530095I07 gene protein-coding 71673 Mm.240586 NM_027859 ENSMUSG00000003581 Rnf215 0610009J22Rik|AW557025|C77903 - 11|11 A1 ring finger protein 215 protein-coding 11973 Mm.29045 NM_007510 ENSMUSG00000019210 Atp6v1e1 2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31 - 6 F1|6 57.01 cM ATPase, H+ transporting, lysosomal V1 subunit E1 protein-coding 61721 D5Mit292 - - 5 79.23 cM DNA segment, Chr 5, Massachusetts Institute of Technology 292 unknown 102639002 XR_373805 Gm35426 - - 1 H5|1 predicted gene, 35426 ncRNA 622318 Gm6312 EG622318 - 6 C3|6 karyopherin alpha 7 (importin alpha 8) pseudogene pseudo 606517 Gm6052 EG606517|Ppia-ps18_318.1 - 18|18 B1 peptidylprolyl isomerase A pseudogene 18_318.1 pseudo 69752 Mm.200818 NM_027201 ENSMUSG00000025470 Zfp511 2410004P19Rik|C86579|Znf511 - 7|7 F4 zinc finger protein 511 protein-coding 61134 D5Mit408 - - 5 60.59 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 408 unknown 100036137 Tbbmd3 - - - total body bone mineral density 3 unknown 110640 Ripr - - - repression of phenobarbitol-inducible P450 protein-coding 114348 Adip8 - - 18 21.09 cM adiposity 8 unknown 105246173 XR_876285 Gm41507 - - 16 C4|16 predicted gene, 41507 ncRNA 100416526 Gm18145 - - 14|14 A3 ribosomal protein L15 pseudogene pseudo 74764 Mm.279599 NM_029091 ENSMUSG00000003546 Klc4 1200014P03Rik|AA408085|AW146303|Knsl8 - 17|17 C kinesin light chain 4 protein-coding 226778 Mm.7445 NM_145515 ENSMUSG00000026620 Mark1 AW491150|B930025N23Rik|Emk3|Par-1c|mKIAA1477|mPar-1c - 1|1 H5 MAP/microtubule affinity regulating kinase 1 protein-coding 435331 Ighv1-79 EG435331|Gm5661 - 12|12 F2 immunoglobulin heavy variable 1-79 other 622795 Rps2-ps7 EG622795|Gm6359 - 16|16 A3 ribosomal protein S2, pseudogene 7 pseudo 14311 Mm.10026 NM_178373 ENSMUSG00000030278 Cidec CIDE-3|Fsp27 - 6|6 E3 cell death-inducing DFFA-like effector c protein-coding 102637960 XR_377574 Gm34642 - - 6 B2.1|6 predicted gene, 34642 ncRNA 629448 Gm6975 EG629448 - 19|19 D1 ribosomal protein L19 pseudogene pseudo 19726 Mm.313321 NM_011265 ENSMUSG00000040929 Rfx3 C230093O12Rik|MRFX3 - 19|19 C1 regulatory factor X, 3 (influences HLA class II expression) protein-coding 102640515 XR_388618 Gm36556 - - 11 B1.3|11 predicted gene, 36556 ncRNA 103974 Rn7s13 Rn7s-13 - - 7S RNA 13 scRNA 108400 Srev13 Srev-13 - - SWR/J-RF/J ecotropic provirus 13 other 102637294 Gm34143 - - 5|5 predicted gene, 34143 ncRNA 105246499 XR_877580 Gm41783 - - 18 E3|18 predicted gene, 41783 ncRNA 20733 Mm.295230 NM_011464 ENSMUSG00000074227 Spint2 AL024025|C76321|HAI-2 - 7|7 B1 serine protease inhibitor, Kunitz type 2 protein-coding 102636630 XR_389646 Gm33641 - - 3 A3|3 predicted gene, 33641 ncRNA 102636251 XR_389353 Gm33370 - - 5 E3|5 predicted gene, 33370 protein-coding 100503533 Gm19755 - - 19|19 29.21 cM 39S ribosomal protein L33, mitochondrial-like pseudo 18194 Mm.38792 NM_010941 ENSMUSG00000031349 Nsdhl AI747449|Bpa|H105E3|Str|XAP104 - X A7.3|X 37.29 cM NAD(P) dependent steroid dehydrogenase-like protein-coding 100041405 Gm3318 - - 10|10 A1 hyaluronic acid binding protein 4 pseudogene pseudo 100035907 Vacq4 - - 2 27.37 cM voluntary alcohol consumption QTL 4 unknown 68889 Mm.441151 NM_026861 ENSMUSG00000041765 Ubac2 1190008A14Rik|AW554959|Phgdhl1 - 14|14 E5 ubiquitin associated domain containing 2 protein-coding 108167885 XR_001780164 Gm46271 - - 11 A1|11 predicted gene, 46271 ncRNA 331513 Mm.490801 NM_177917 Gm9927 9330152L17 - X D|X predicted gene 9927 unknown 13839 Mm.137991 NM_007937 ENSMUSG00000029245 Epha5 AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk - 5 E1|5 43.0 cM Eph receptor A5 protein-coding 16150 Mm.277886 NM_010546 ENSMUSG00000031537 Ikbkb AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta - 8|8 A2 inhibitor of kappaB kinase beta protein-coding 328324 Mm.402274 NR_046158 ENSMUSG00000114590 5930438M14Rik 5930438M14 - 13|13 D1 RIKEN cDNA 5930438M14 gene ncRNA 108466 Ms40 MMS40 - - minisatellites detected by probe MMS40 other 105242712 XR_869242 Gm38855 - - 6 D1|6 predicted gene, 38855 ncRNA 74418 4932702M13Rik - - 4|4 RIKEN cDNA 4932702M13 gene protein-coding 105247310 XR_882569 Gm45922 - - 6 B2.3|6 predicted gene, 45922 ncRNA 74251 Mm.250989 NM_175207 ENSMUSG00000037904 Ankrd9 2500003O20Rik - 12|12 F1 ankyrin repeat domain 9 protein-coding 100862310 Gm21633 - - Y|Y predicted gene, 21633 protein-coding 16485 Mm.40424 NM_010595 ENSMUSG00000047976 Kcna1 AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph - 6 F3|6 61.57 cM potassium voltage-gated channel, shaker-related subfamily, member 1 protein-coding 102640445 XR_001785316 Gm36505 - - 6 D1|6 predicted gene, 36505 ncRNA 105245400 XR_872557 Gm40862 - - 12 A1.3|12 predicted gene, 40862 protein-coding 102412 AA517656 - - - expressed sequence AA517656 unknown 13292 Del(16)51H Del51H - - deletion, Chr 16, Harwell 51 other 78471 Mm.47152 NR_046197 ENSMUSG00000085044 1700109G15Rik - - 11|11 C RIKEN cDNA 1700109G15 gene ncRNA 27900 D16Ium65 - - - DNA segment, Chr 16, Indiana University Medical 65 unknown 100418230 Gm19086 - - 1|1 E2.1 survival of motor neuron protein interacting protein 1 pseudogene pseudo 100040606 Mm.460713 NM_001099333 ENSMUSG00000101500 Btbd35f12 Gm2863 - X A3.1|X BTB domain containing 35, family member 12 protein-coding 102635292 Gm32669 - - 13|13 predicted gene, 32669 ncRNA 102634133 XR_374673 Gm31790 - - 2 C3|2 predicted gene, 31790 ncRNA 74386 Mm.85289 NM_028904 ENSMUSG00000035367 Rmi1 4932432N11Rik|C79893 - 13|13 B1 RecQ mediated genome instability 1 protein-coding 11877 Mm.293599 NM_033474 ENSMUSG00000000325 Arvcf - - 16 A3|16 11.37 cM armadillo repeat gene deleted in velocardiofacial syndrome protein-coding 17005 Mm.1740 NM_008523 ENSMUSG00000027297 Ltk - - 2 E5|2 59.97 cM leukocyte tyrosine kinase protein-coding 21069 T(11;17)202Dn T202Dn - - reciprocal translocation, Chr 11 and 17, Davisson 202 other 258203 Mm.376126 NM_001011868 ENSMUSG00000056995 Olfr1178 MOR225-6P - 2|2 D olfactory receptor 1178 protein-coding 78025 Mm.55983 NR_040746 ENSMUSG00000111299 4930540M03Rik - - 9|9 A2 RIKEN cDNA 4930540M03 gene ncRNA 225872 Mm.287867 NM_153553 ENSMUSG00000045903 Npas4 LE-PAS|Nxf - 19|19 A neuronal PAS domain protein 4 protein-coding 100035471 Rfpw1 Rf1 - - retroperitoneal fat pad weight 1 unknown 170460 Mm.357953 NM_023377 ENSMUSG00000046027 Stard5 2310058G22Rik|AI607880|D7Ertd152e - 7 D3|7 47.43 cM StAR-related lipid transfer (START) domain containing 5 protein-coding 57432 Mm.11675 NM_020594 ENSMUSG00000027387 Zc3h8 AU020882|E130108N08Rik|Fliz1|Zc3hdc8 - 2|2 F1 zinc finger CCCH type containing 8 protein-coding 19171 Mm.787 NM_013640 ENSMUSG00000031897 Psmb10 Mecl-1|Mecl1 - 8 D3|8 53.06 cM proteasome (prosome, macropain) subunit, beta type 10 protein-coding 70823 Mm.261739 NM_178017 ENSMUSG00000034518 Hmgxb4 4733401K04Rik|AI316803|Hmgb2l1 - 8|8 C1 HMG box domain containing 4 protein-coding 66253 Mm.45755 NM_025446 ENSMUSG00000019806 Aig1 1500031O19Rik|AV064870|AW413422|CGI-103 - 10|10 A2 androgen-induced 1 protein-coding 100039608 Gm2337 - - 5|5 E1 mitochondrial ribosomal protein L12 pseudogene pseudo 105245595 XR_873818 Gm29543 - - 13 D1|13 predicted gene 29543 ncRNA 109433 Scc7 - - 3 72.36 cM colon tumor susceptibility 7 unknown 102640858 XR_877067 Gm36826 - - 17 E4|17 predicted gene, 36826 ncRNA 435271 Gm11427 - - 11|11 C schlafen 4 pseudogene pseudo 675593 Spin3-ps Spin3 - 3 A3|3 spindlin family, member 3, pseudogene pseudo 81003 Mm.244190 NM_030731 ENSMUSG00000021712 Trim23 6330516O20Rik|AI450195|Arfd1 - 13|13 D1 tripartite motif-containing 23 protein-coding 232406 Mm.30745 NM_001254946 ENSMUSG00000090164 BC035044 - - 6|6 F3 cDNA sequence BC035044 protein-coding 62677 D15Mit161 - - 15 52.78 cM DNA segment, Chr 15, Massachusetts Institute of Technology 161 unknown 102635776 XR_388934 Gm33028 - - 11 C|11 predicted gene, 33028 ncRNA 102633878 XR_382211 Gm31600 - - 13 A3.3|13 predicted gene, 31600 ncRNA 387217 NR_029530 ENSMUSG00000065599 Mir23b Mirn23b|mmu-mir-23b - 13|13 B3 microRNA 23b ncRNA 667841 Gm8839 EG667841 - X|X C1 ATP-binding cassette, sub-family F (GCN20), member 1 pseudogene pseudo 105246869 Gm42076 - - 11|11 predicted gene, 42076 ncRNA 70750 Mm.458911 NM_027534 ENSMUSG00000009905 Kdsr 6330410P18Rik|9430079B08Rik|Fvt1 - 1|1 E2.1 3-ketodihydrosphingosine reductase protein-coding 675912 Gm13377 Prtfdc1 - 2|2 A3 phosphoribosyltransferase domain containing 1 pseudogene pseudo 100417516 Gm18662 - - 2|2 H4 GC-rich promoter binding protein 1 pseudogene pseudo 71641 4930415K08Rik - - - RIKEN cDNA 4930415K08 gene protein-coding 105246593 XR_877918 Gm41863 - - 19 D2|19 predicted gene, 41863 ncRNA 111741 Mpmv18 Mpmv-18 - - modified polytropic murine leukemia virus 18 other 102640320 XR_375357 Gm36417 - - 2 H3|2 predicted gene, 36417 ncRNA 66913 Mm.181880 NM_025841 ENSMUSG00000079111 Kdelr2 1110007A14Rik - 5|5 G2 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 protein-coding 105244447 XR_867301 Gm40054 - - 3 C|3 predicted gene, 40054 ncRNA 110197 Mm.194986 NM_138650 ENSMUSG00000022861 Dgkg 2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131 - 16 B1|16 13.37 cM diacylglycerol kinase, gamma protein-coding 387210 NR_029796 ENSMUSG00000065516 Mir214 Mirn214|mir-214|mmu-mir-214 - 1|1 H2.1 microRNA 214 ncRNA 100101046 D230018H15Rik - - - RIKEN cDNA D230018H15 gene protein-coding 61455 D6Mit178 - - 6 42.99 cM DNA segment, Chr 6, Massachusetts Institute of Technology 178 unknown 102642793 Gm38635 - - 7|7 predicted gene, 38635 ncRNA 664868 Rpl38-ps2 EG664868|Gm7379 - 6|6 G2 ribosomal protein L38, pseudogene 2 pseudo 50775 Mm.389990 NM_015809 ENSMUSG00000045236 Krtap5-4 - - 7|7 F5 keratin associated protein 5-4 protein-coding 100417843 Gm12067 - - 11|11 A3.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 pseudogene pseudo 100043228 Gm15235 - - 3 F2.1|3 predicted gene 15235 pseudo 100038955 Gm1982 - - 7|7 B3 predicted gene 1982 pseudo 100036268 Espq1 - - - embryo survival preimplantation QTL 1 unknown 102639689 Gm35942 - - 17|17 predicted gene, 35942 ncRNA 101056046 LOC101056046 - - X C3 60S ribosomal protein L7a pseudogene pseudo 227195 Mm.74718 NM_001081436 ENSMUSG00000040865 Ino80d 7330405I11|A430093A21Rik|BC010584 - 1|1 C2 INO80 complex subunit D protein-coding 105244380 XR_867041 Gm39999 - - 2 H3|2 predicted gene, 39999 ncRNA 209786 NM_001102583 Vmn2r-ps88 EG209786 - 8|8 A1.1 vomeronasal 2, receptor, pseudogene 88 pseudo 102636280 XR_377683 Gm33392 - - 6 B3|6 predicted gene, 33392 ncRNA 320260 Mm.445212 A230059L01Rik - - 1|1 RIKEN cDNA A230059L01 gene protein-coding 102467279 n-TCgca29 n-Tc29 - 6 B2.3|6 nuclear encoded tRNA cysteine 29 (anticodon GCA) tRNA 628283 Igkv2-107 EG628283|Gm6864|hc24 - 6|6 C1 immunoglobulin kappa variable 2-107 pseudo 83492 Mm.335619 NM_031378 ENSMUSG00000079025 Gsdmc Gsdmc1|Mlze - 15|15 D1 gasdermin C protein-coding 102640885 XR_387918 Gm36843 Gm45333 - 8 C5|8 predicted gene, 36843 ncRNA 106829 AW743439 - - - expressed sequence AW743439 unknown 432964 Mm.44318 XM_006521617 ENSMUSG00000102018 K230010J24Rik 4933407E14Rik - 15|15 D3 RIKEN cDNA K230010J24 gene protein-coding 100416739 Gm18220 - - 4|4 C6 zinc finger protein 352 pseudogene pseudo 105246114 XR_876087 LOC105246114 - - 16 B4 uncharacterized LOC105246114 ncRNA 21808 Mm.18213 NM_009367 ENSMUSG00000039239 Tgfb2 BB105277|Tgf-beta2|Tgfb-2 - 1 H5|1 89.95 cM transforming growth factor, beta 2 protein-coding 102637108 Gm34003 - - 2|2 predicted gene, 34003 protein-coding 102634596 XR_001783446 Gm32137 - - 2 E5|2 predicted gene, 32137 ncRNA 74229 Mm.40780 NM_028829 ENSMUSG00000025931 Paqr8 1700019B16Rik|3110001D06Rik - 1|1 A4 progestin and adipoQ receptor family member VIII protein-coding 217201 Mm.305941 NM_172566 ENSMUSG00000035007 Rundc1 AW125546|D930024B17 - 11|11 D RUN domain containing 1 protein-coding 100036301 Ibdq1 - - 9 31.63 cM inflammatory bowel disease QTL 1 unknown 258749 Mm.377671 NM_146754 ENSMUSG00000073969 Olfr556 MOR41-1 - 7|7 E3 olfactory receptor 556 protein-coding 110656 Idd5 Idd-5 - - insulin dependent diabetes susceptibility 5 protein-coding 102466987 NR_105861 ENSMUSG00000105982 Mir6896 mmu-mir-6896 - 1|1 B microRNA 6896 ncRNA 234564 Mm.29110 NM_144930 ENSMUSG00000031725 Ces1f AU018778|CesML1|TGH-2 - 8|8 C5 carboxylesterase 1F protein-coding 53419 Mm.332425 NM_016869 ENSMUSG00000005220 Corin AV273130|Lrp4 - 5|5 C3.2 corin protein-coding 319755 6330566A10Rik - - 3|3 RIKEN cDNA 6330566A10 gene protein-coding 78934 Mm.391688 NR_029475 ENSMUSG00000070315 4930581F22Rik - - 9|9 A4 RIKEN cDNA 4930581F22 gene ncRNA 20016 Mm.3458 NM_009085 ENSMUSG00000067148 Polr1c 40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1 - 17|17 C polymerase (RNA) I polypeptide C protein-coding 77331 Mm.374962 NR_040482 ENSMUSG00000099938 C030007H22Rik - - 1|1 D RIKEN cDNA C030007H22 gene ncRNA 61881 D1Mit324 - - 1 29.13 cM DNA segment, Chr 1, Massachusetts Institute of Technology 324 unknown 100035530 Hdlq2 - - 5 52.23 cM HDL QTL 2 unknown 78706 Mm.366094 NR_040385 ENSMUSG00000097639 Platr4 C430002E04Rik - 3|3 B pluripotency associated transcript 4 ncRNA 666532 Mm.392861 NM_001083918 ENSMUSG00000067916 Zfp991 Gm13139 - 4|4 E1 zinc finger protein 991 protein-coding 228003 Mm.178784 NM_001081087 ENSMUSG00000075307 Klhl41 Gm112|Kbtbd10|SARCOSIN - 2|2 C2 kelch-like 41 protein-coding 212679 Mm.19223 NM_175439 ENSMUSG00000046994 Mars2 C730026E21Rik|MetRS - 1|1 C1.2 methionine-tRNA synthetase 2 (mitochondrial) protein-coding 237761 Mm.145208 NM_183173 ENSMUSG00000044352 Sowaha A830006N08Rik|Ankrd43 - 11|11 B1.3 sosondowah ankyrin repeat domain family member A protein-coding 78771 Mm.316249 NM_030174 ENSMUSG00000021596 Mctp1 2810465F10Rik - 13|13 C1 multiple C2 domains, transmembrane 1 protein-coding 105246027 XR_875611 Gm41389 - - 15 F1|15 predicted gene, 41389 ncRNA 102640701 Gm48906 - - 14 C3|14 predicted gene, 48906 pseudo 71810 Mm.29608 NM_027933 ENSMUSG00000002372 Ranbp3 2610024N24Rik|AA408221 - 17|17 D RAN binding protein 3 protein-coding 104369 Mm.453531 NR_002900 ENSMUSG00000065642 Snora69 MBI-134|Rnu69 - X|X A3.3 small nucleolar RNA, H/ACA box 69 snoRNA 74152 Mm.63645 NM_028788 ENSMUSG00000028327 Stra6l 1300002K09Rik|Rbpr2 - 4|4 B1 STRA6-like protein-coding 102633958 Gm31655 - - 13|13 predicted gene, 31655 ncRNA 100043025 Mm.482059 NM_001167167 ENSMUSG00000096760 Gm4177 Vmn1r134 - 7 A3|7 predicted gene 4177 protein-coding 67416 Mm.285969 NM_026139 ENSMUSG00000033436 Armcx2 3230401N03Rik|AI043003|ALEX2 - X|X E3 armadillo repeat containing, X-linked 2 protein-coding 102636629 Gm33640 - - 1|1 predicted gene, 33640 ncRNA 102638063 Gm34716 - - Y|Y predicted gene, 34716 ncRNA 109461 Tlsr4 - - 4 39.46 cM thymic lymphoma suppressor region 4 unknown 667567 Trav14-2 Gm13927 - 14 C2|14 T cell receptor alpha variable 14-2 other 106604 Mm.292016 AI467299 - - - expressed sequence AI467299 unknown 12166 Mm.237825 NM_009758 ENSMUSG00000021796 Bmpr1a 1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5 - 14 B|14 20.81 cM bone morphogenetic protein receptor, type 1A protein-coding 110120531 LOC110120531 - - - VISTA enhancer mm1556 biological-region 100359411 Mm.481672 Gm9798 - - 19 D1|19 predicted gene 9798 unknown 112076 Phospq1 - - 18 18.83 cM phospholipid QTL 1 unknown 73489 Mm.488103 NR_040500 ENSMUSG00000084859 1700080N15Rik 4933408D14Rik - 2|2 A1 RIKEN cDNA 1700080N15 gene ncRNA 108168908 XR_001784022 LOC108168908 - - 3 H2 uncharacterized LOC108168908 ncRNA 100038617 Mm.387376 NR_033491 ENSMUSG00000073103 Gm10466 - - 11 A3.2|11 predicted gene 10466 ncRNA 110945 Kcna1-rs4 - - - potassium voltage-gated channel, shaker-related subfamily, member 1, related sequence 4 protein-coding 51820 D0Wfb1e - - - DNA segment, Bodmer 1, expressed unknown 102631810 Mm.412563 NR_136914 ENSMUSG00000110582 Gm30052 - - 8 E1|8 predicted gene, 30052 ncRNA 667483 Gm8659 EG667483 - X F4|X aldolase A, fructose-bisphosphate pseudogene pseudo 100049568 Mm.348374 Gm10252 - - - predicted gene 10252 unknown 723908 NR_029764 ENSMUSG00000065607 Mir331 Mirn331|mmu-mir-331 - 10|10 C2 microRNA 331 ncRNA 100417055 Gm18388 - - 12|12 D3 transmembrane protein 126A pseudogene pseudo 217869 Mm.271222 NM_173363 ENSMUSG00000021282 Eif5 2810011H21Rik|D12Ertd549e - 12 F1|12 61.03 cM eukaryotic translation initiation factor 5 protein-coding 72658 Mm.434380 NM_028314 ENSMUSG00000062198 2700097O09Rik AW552125 - 12|12 C1 RIKEN cDNA 2700097O09 gene protein-coding 72690 Mm.100168 NM_001099296 ENSMUSG00000050105 Grrp1 2810043G13Rik|Fam110d - 4|4 D3 glycine/arginine rich protein 1 protein-coding 627420 Gm6754 EG627420 - X|X A6 predicted pseudogene 6754 pseudo 102640218 LOC102640218 - - 11 A1 60S ribosomal protein L36a-like pseudo 791288 Mm.483659 XR_141302 ENSMUSG00000052471 Gm9881 - - 16 C3.3|16 predicted gene 9881 protein-coding 383850 Rpl23a-ps5 EG383850|Gm5275 - 3|3 C ribosomal protein L23A, pseudogene 5 pseudo 493118 Aorls2 - - 7 31.44 cM aortic lesion size 2 unknown 100503008 Mm.484518 XR_140522 Gm19501 - - 2 F1|2 62.1 cM predicted gene, 19501 ncRNA 100035891 Crhr1taq1 - - 7 2.89 cM Crhr1 transcript abundance QTL 1 unknown 110120487 LOC110120487 - - - VISTA enhancer mm1558 biological-region 100417751 Gm18806 - - 7|7 D3 G2/M-phase specific E3 ubiquitin ligase pseudogene pseudo 332396 Mm.329947 NM_207261 ENSMUSG00000040901 Kcnk18 Gm781|Tresk|Tresk-2|Trik - 19|19 D3 potassium channel, subfamily K, member 18 protein-coding 107166 Mm.440117 AI415730 - - - expressed sequence AI415730 protein-coding 102632669 Mm.446321 XR_001783836 ENSMUSG00000085174 Gm16206 - - 3 C|3 25.15 cM predicted gene 16206 ncRNA 668117 Gm8982 EG668117 - 7 E3|7 ornithine decarboxylase, structural 1 pseudogene pseudo 102640335 Gm36426 - - 13|13 predicted gene, 36426 ncRNA 102640280 XR_870672 Gm36390 - - 9 A5.1|9 predicted gene, 36390 ncRNA 100503461 Gm19706 - - 5|5 60.64 cM predicted gene, 19706 ncRNA 12322 Mm.131530 NM_009792 ENSMUSG00000024617 Camk2a CaMKII|R74975|mKIAA0968 - 18 E1|18 34.41 cM calcium/calmodulin-dependent protein kinase II alpha protein-coding 74119 Mm.410869 1200007C13Rik - - 2|2 H3 RIKEN cDNA 1200007C13 gene protein-coding 382696 Ighv1-52 Gm16828 - 12|12 F2 immunoglobulin heavy variable 1-52 other 101055723 Gm15113 - - X F2|X 68.46 cM predicted gene 15113 pseudo 545459 Gm10766 - - 2 F1|2 predicted gene 10766 protein-coding 61992 DXMit196 - - - DNA Segment, Chr X, Massachusetts Institute of Technology 196 unknown 208522 Gm4754 EG208522 - 5|5 B3 predicted gene 4754 pseudo 62170 D14Mit71 - - 14 47.02 cM DNA segment, Chr 14, Massachusetts Institute of Technology 71 unknown 100049608 Fmtq10 - - - femur mechanical trait QTL 10 unknown 61949 D6Mit329 - - 6 53.01 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 329 unknown 52524 D14Ertd725e - - 14 11.78 cM DNA segment, Chr 14, ERATO Doi 725, expressed unknown 16668 Mm.22479 NM_010664 ENSMUSG00000023043 Krt18 CK18|K18|Krt1-18 - 15 F2|15 57.22 cM keratin 18 protein-coding 217082 Mm.158903 NM_172563 ENSMUSG00000003949 Hlf E230015K02Rik - 11 C|11 55.03 cM hepatic leukemia factor protein-coding 214254 Mm.386852 NM_172527 ENSMUSG00000033405 Nudt15 6530403O17|A730068G11Rik|MTH2 - 14|14 D3 nudix (nucleoside diphosphate linked moiety X)-type motif 15 protein-coding 101055851 Gm29732 - - 3|3 predicted gene, 29732 ncRNA 100041184 Gm3187 100041487|Gm3366 - 14 A1|14 predicted gene 3187 protein-coding 237890 Mm.297670 NM_001166028 ENSMUSG00000082101 Slfn14 Gm20|Slfn14-ps - 11|11 C schlafen 14 protein-coding 27777 03B03F - - - DNA segment, 03B03F (Research Genetics) unknown 240058 Mm.39905 NM_153166 ENSMUSG00000024008 Cpne5 A830083G22Rik - 17|17 A3.3 copine V protein-coding 100415901 Mm.437006 NR_132444 ENSMUSG00000086549 Gm13648 - - 4 E2|4 predicted gene 13648 ncRNA 667387 XR_386964 Xlr4d-ps Xlr4d - X A7.3|X X-linked lymphocyte-regulated 4D, pseudogene ncRNA 791358 Mm.441300 Gm10065 - - - predicted gene 10065 protein-coding 100039467 Mm.427330 NM_001100609 ENSMUSG00000094759 Gm10487 - - X A3.1|X predicted gene 10487 protein-coding 102635431 XR_390863 Gm32770 - - 4 D3|4 predicted gene, 32770 ncRNA 70011 Mm.393871 NR_045304 ENSMUSG00000100969 1700030N03Rik 1700087C08Rik - 19 A|19 RIKEN cDNA 1700030N03 gene ncRNA 102637848 XR_381936 Gm34554 - - 12 F1|12 predicted gene, 34554 ncRNA 20755 Mm.6853 NM_011468 ENSMUSG00000078664 Sprr2a1 Sprr2a|Sprr2a3 - 3 F1|3 40.14 cM small proline-rich protein 2A1 protein-coding 52062 D9Ertd26e - - 9 25.36 cM DNA segment, Chr 9, ERATO Doi 26, expressed unknown 622139 Mm.447150 NM_001039222 ENSMUSG00000074196 Clca4c-ps Clca4c|EG622139|Gm18718|Gm6289 - 3|3 H2 chloride channel accessory 4C, pseudogene pseudo 12408 Mm.26940 NM_007620 ENSMUSG00000051483 Cbr1 AW261796|CR|Cbr - 16 C4|16 54.53 cM carbonyl reductase 1 protein-coding 105246430 XR_877385 Gm41720 - - 18 C|18 predicted gene, 41720 ncRNA 319330 B930063I24Rik B930016M04Rik - - RIKEN cDNA B930063I24 gene protein-coding 269252 Mm.26043 NM_172977 ENSMUSG00000035666 Gtf3c4 5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90 - 2|2 A3 general transcription factor IIIC, polypeptide 4 protein-coding 432812 Mm.317358 NR_028430 BC052688 - - 13|13 B3 cDNA sequence BC052688 pseudo 109279930 LOC109279930 Mm247 - - VISTA enhancer mm247 biological-region 102638299 XR_381942 Gm34895 - - 12 F1|12 predicted gene, 34895 ncRNA 100417378 Gm18577 - - 14|14 A3 ubiquitin specific peptidase 7 pseudogene pseudo 278240 Mm.293363 NM_001005370 ENSMUSG00000046550 Spin2c BC068162|SPIN-2C|Spin2 - X|X F3 spindlin family, member 2C protein-coding 71384 Mm.426068 5430440L12Rik AW536637 - 19|19 RIKEN cDNA 5430440L12 gene protein-coding 98956 Mm.288005 NM_153126 ENSMUSG00000027185 Nat10 AI429152 - 2|2 E2 N-acetyltransferase 10 protein-coding 61472 D7Mit108 - - 7 76.89 cM DNA segment, Chr 7, Massachusetts Institute of Technology 108 unknown 228858 Mm.102080 NM_144891 ENSMUSG00000017943 Gdap1l1 Gdap1l - 2|2 H3 ganglioside-induced differentiation-associated protein 1-like 1 protein-coding 105243022 XR_869857 Gm39063 - - 7 E3|7 predicted gene, 39063 ncRNA 100504465 Gm20239 - - 5 B1|5 13.23 cM NEDD4-binding protein 1-like pseudo 258181 Mm.377372 NM_001011863 ENSMUSG00000070375 Olfr406 MOR133-1|Olfr406-ps - 11|11 B5 olfactory receptor 406 protein-coding 85110 D15Mit12 - - 15 1.8 cM DNA segment, Chr 15, Massachusetts Institute of Technology 12 unknown 78087 5730402E23Rik - - 6|6 RIKEN cDNA 5730402E23 gene protein-coding 67042 Mm.30191 NM_025931 ENSMUSG00000016637 Ift27 2600013G09Rik|Rabl4 - 15|15 E1 intraflagellar transport 27 protein-coding 52712 Mm.340052 NM_026107 ENSMUSG00000018347 Zkscan6 1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18 - 11 B3|11 40.53 cM zinc finger with KRAB and SCAN domains 6 protein-coding 102637773 XR_383568 Gm34500 - - 14 D2|14 predicted gene, 34500 ncRNA 76539 Mm.290183 NM_029648 ENSMUSG00000057858 Fam204a 2310065H12Rik|2610015K05Rik|D19Ertd737e - 19 D3|19 56.52 cM family with sequence similarity 204, member A protein-coding 62338 D19Mit91 - - 19 40.53 cM DNA segment, Chr 19, Massachusetts Institute of Technology 91 unknown 105244274 Gm39915 - - 2|2 predicted gene, 39915 ncRNA 102636454 XR_376145 Gm33514 - - 3 H1|3 predicted gene, 33514 ncRNA 227731 Mm.37395 NM_146118 ENSMUSG00000026819 Slc25a25 1110030N17Rik|MCSC|mKIAA1896 - 2|2 B solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25 protein-coding 102636561 XR_374260 Gm13530 - - 2 B|2 22.47 cM predicted gene 13530 ncRNA 61317 D3Mit160 - - 3 66.68 cM DNA segment, Chr 3, Massachusetts Institute of Technology 160 unknown 66302 Mm.440686 NM_025476 ENSMUSG00000028229 Rmdn1 Fam82b|RMD-1 - 4|4 A3 regulator of microtubule dynamics 1 protein-coding 104732 Mm.87616 NM_134041 ENSMUSG00000037466 Tedc1 4930427A07Rik|AA536649|mFLJ00116 - 12|12 F1 tubulin epsilon and delta complex 1 protein-coding 102641347 LOC102641347 - - - NADH dehydrogenase [ubiquinone] 1 subunit C2 protein-coding 28139 DYzEms12 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 12 unknown 100039348 Mm.254722 NR_028424 Gm2176 A430076E10Rik - 18|18 E3 glucosamine-6-phosphate deaminase 1 pseudogene pseudo 102436 Mm.276076 NM_153168 ENSMUSG00000035202 Lars2 AI035546|Kiaa0028|LEURS - 9 F4|9 73.92 cM leucyl-tRNA synthetase, mitochondrial protein-coding 394252 Mm.352392 NM_201376 ENSMUSG00000058017 Serpinb3d Serpinb3l1 - 1 E2.1|1 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3D protein-coding 61645 D8Mit213 - - 8 57.54 cM DNA segment, Chr 8, Massachusetts Institute of Technology 213 unknown 215445 Mm.41191 NM_153140 ENSMUSG00000037098 Rab11fip3 Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665 - 17|17 A3.3 RAB11 family interacting protein 3 (class II) protein-coding 102636557 XR_389781 Gm33591 - - 5 A3|5 predicted gene, 33591 ncRNA 100042683 Gm3963 - - 13|13 C1 predicted gene 3963 pseudo 100862206 Gm21559 - - 12 D2|12 predicted gene, 21559 pseudo 74404 Mm.56326 4933404M09Rik - - 13|13 RIKEN cDNA 4933404M09 gene protein-coding 100039756 Gm2407 - - 7|7 D3 predicted gene 2407 pseudo 21197 T(5;11)17Ad T17Ad - - reciprocal translocation, Chr 5 and 11, Adler 17 other 12385 Mm.18962 NM_009818 ENSMUSG00000037815 Ctnna1 2010010M04Rik|AA517462|AI988031|Catna1 - 18 B1|18 18.89 cM catenin (cadherin associated protein), alpha 1 protein-coding 14768 Mm.20522 NM_021295 ENSMUSG00000026000 Lancl1 AW124738|Gpr69|Gpr69a|p40 - 1|1 C3 LanC (bacterial lantibiotic synthetase component C)-like 1 protein-coding 102631584 XR_001783431 Gm29885 - - 2 E3|2 predicted gene, 29885 ncRNA 244189 Gm4972 EG244189 - 7|7 E3 predicted gene 4972 pseudo 19054 Mm.271249 NM_011154 ENSMUSG00000093803 Ppp2r3d PP2A B''-PR59|PP2A PR59|PR59|Ppp2r3|Ppp2r3a - 9|9 F4 protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta protein-coding 61564 DXMit109 - - X 35.54 cM DNA segment, Chr X, Massachusetts Institute of Technology 109 unknown 19655 Mm.28275 NM_011252 ENSMUSG00000031134 Rbmx hnRNP G - X|X A6 RNA binding motif protein, X chromosome protein-coding 100504486 Mm.440246 NR_045032 Gdap10 Gdap-ps - 12|12 A3 ganglioside-induced differentiation-associated-protein 10 ncRNA 211739 Mm.284015 NM_145967 ENSMUSG00000048834 Vstm2a Vstm2 - 11|11 A2 V-set and transmembrane domain containing 2A protein-coding 12295 Mm.41252 NM_031173 ENSMUSG00000020882 Cacnb1 CAB1|Cchb1|Cchlb1 - 11 D|11 61.5 cM calcium channel, voltage-dependent, beta 1 subunit protein-coding 15968 Mm.377089 NM_010505 ENSMUSG00000096682 Ifna5 Ifa5 - 4 C4|4 42.03 cM interferon alpha 5 protein-coding 109335 Mm.367727 NR_028438 ENSMUSG00000112398 9230102K24Rik - - 10|10 D1 RIKEN cDNA 9230102K24 gene ncRNA 319289 A430087P03Rik - - - RIKEN cDNA A430087P03 gene protein-coding 353208 Mm.381194 NM_001162922 ENSMUSG00000078861 Zfp931 2810021G02Rik - 2|2 H4 zinc finger protein 931 protein-coding 78255 Mm.28376 NM_023884 ENSMUSG00000026594 Ralgps2 1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161 - 1|1 G3 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 105242688 XR_869185 Gm38837 - - 6 C3|6 predicted gene, 38837 ncRNA 320444 D030059C06Rik - - 2|2 H1 RIKEN cDNA D030059C06 gene protein-coding 100035088 W6q11 - - 17 19.62 cM weight 6 weeks QTL 11 unknown 114161 Cons1 - - - consumption-saccharin intake 1 unknown 108168234 XR_001781617 Gm46511 - - 15 A1|15 predicted gene, 46511 ncRNA 231807 Mm.164493 NM_153161 ENSMUSG00000036948 BC037034 - - 5|5 G2 cDNA sequence BC037034 protein-coding 101056162 Gm6166 EG620603 - 9|9 B fatty acid-binding protein, epidermal-like pseudo 627984 Mm.390378 NM_001039234 ENSMUSG00000092528 Nlrp1c-ps Nalp1c|Nlrp1c - 11|11 B4 NLR family, pyrin domain containing 1C, pseudogene pseudo 102637416 XR_373780 Gm34229 - - 1 H5|1 predicted gene, 34229 ncRNA 57765 Mm.94519 NM_019507 ENSMUSG00000001444 Tbx21 TBT1|Tbet|Tblym - 11|11 D T-box 21 protein-coding 102639643 XR_377732 Gm35906 - - 6 C1|6 predicted gene, 35906 ncRNA 791354 Mm.122885 Gm9873 - - - predicted gene 9873 protein-coding 102631628 Gm29494 - - Y|Y predicted gene 29494 protein-coding 14235 Mm.42148 NM_008021 ENSMUSG00000001517 Foxm1 AA408308|AW554517|BB238854|Fkh16|Foxm1b|HFH-11B|MPHOSPH2|Mpm2|WIN - 6 F3|6 62.98 cM forkhead box M1 protein-coding 102639717 Mm.445804 XR_879194 Gm15894 - - 8 E1|8 57.69 cM predicted gene 15894 ncRNA 102633492 Mm.446963 XR_867490 Gm31305 Gm43076 - 3 F2.2|3 predicted gene, 31305 ncRNA 171536 AF179935 563-17-92 - - DNA sequence AF179935 unknown 101498 AI194348 - - - expressed sequence AI194348 unknown 112163579 AA386926 - - - expressed sequence AA386926 protein-coding 100294660 Mm.327348 NM_001195634 ENSMUSG00000096295 Defa2 CR2|Defcr-2|Defcr2 - 8 A2|8 defensin, alpha, 2 protein-coding 105244932 XR_869898 Gm40454 - - 7 F1|7 predicted gene, 40454 ncRNA 105243701 XR_878146 LOC105243701 - - X C3 uncharacterized LOC105243701 ncRNA 105245661 XR_874094 Gm41084 - - 14 A1|14 predicted gene, 41084 ncRNA 27730 D1Sta2 y4L - - DNA segment, Chr 1, Philip Stanier 2 unknown 667182 Gm15785 EG667182 - 6 G3|6 predicted gene 15785 pseudo 110267 Ftl1-rs8 - - - ferritin light chain 1, related sequence 8 protein-coding 105246743 Gm41985 - - 2|2 predicted gene, 41985 ncRNA 547329 Mm.321046 Trav16d-dv11 Gm10893|Trav16d/dv11 - 14|14 C2 T cell receptor alpha variable 16D-DV11 other 77668 Mm.98433 NR_033453 9130209A04Rik - - 18|18 C RIKEN cDNA 9130209A04 gene ncRNA 359962 DXMgc99 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 99 unknown 18462 pad - - - paddle unknown 382018 Mm.334606 NM_001029873 ENSMUSG00000034799 Unc13a 2410078G03Rik|Munc13-1 - 8|8 B3.3 unc-13 homolog A (C. elegans) protein-coding 667202 Rps2-ps3 EG667202|Gm8511 - 10|10 A3 ribosomal protein S2, pseudogene 3 pseudo 102635996 XR_376552 Gm33192 - - 4 D1|4 predicted gene, 33192 ncRNA 102634090 Gm38458 - - 2|2 predicted gene, 38458 ncRNA 102632188 Gm30328 - - 13|13 predicted gene, 30328 pseudo 102467653 n-TPcgg2 n-Tp8 - 1 H2.3|1 nuclear encoded tRNA proline 2 (anticodon CGG) tRNA 102640201 XR_387906 Gm36325 Gm45451 - 8 C5|8 predicted gene, 36325 ncRNA 61422 D5Mit221 - - 5 76.91 cM DNA segment, Chr 5, Massachusetts Institute of Technology 221 unknown 16314 In(X)1H In1H - - inversion, Chr X, Harwell 1 other 75138 Mm.490787 NR_045317 ENSMUSG00000097091 4930526L06Rik - - 19|19 A RIKEN cDNA 4930526L06 gene ncRNA 112435 Lrnpcs3 - - - learning-preconditioned stimulus 3 unknown 102631516 XR_381359 Gm29835 - - 12 A2|12 predicted gene, 29835 ncRNA 100113396 Gm10689 - - 8|8 A2 predicted gene 10689 pseudo 67971 Mm.29358 NM_026481 ENSMUSG00000014846 Tppp3 2700055K07Rik|CGI-38|Ceacam9|mmCGM8 - 8|8 D3 tubulin polymerization-promoting protein family member 3 protein-coding 16216 In(1)1Icg-d In(1)1Icg|In1Icg - - inversion, Chr 1, Inst of Cytology and Genetics Novosibirsk 1, distal other 22092 Mm.12743 NM_025290 ENSMUSG00000024033 Rsph1 MCA|Tsga2 - 17 A3.3|17 15.94 cM radial spoke head 1 homolog (Chlamydomonas) protein-coding 100327264 Mm.393526 C130013H08Rik - - 3 F3|3 RIKEN cDNA C130013H08 gene unknown 20318 Mm.293517 NM_011341 ENSMUSG00000029076 Sdf4 Cab45 - 4|4 E2 stromal cell derived factor 4 protein-coding 100035523 Bmrbc4 - - - bone marrow RBC 4 unknown 380842 Mm.188108 NM_001005422 ENSMUSG00000063529 Stmnd1 Gm1574 - 13|13 A5 stathmin domain containing 1 protein-coding 228036 Mm.123971 XR_001783615 ENSMUSG00000085387 A630050E04Rik Gm557 - 2|2 C3 RIKEN cDNA A630050E04 gene ncRNA 61635 D8Mit240 - - 8 44.99 cM DNA segment, Chr 8, Massachusetts Institute of Technology 240 unknown 668008 XR_376769 ENSMUSG00000094105 Gm8922 - - 5 A1|5 predicted gene 8922 pseudo 22215 Mm.9002 NM_011668 ENSMUSG00000025326 Ube3a 4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a - 7 B5|7 33.95 cM ubiquitin protein ligase E3A protein-coding 243853 Mm.39703 NM_173430 ENSMUSG00000048920 Fkrp A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C - 7|7 A2 fukutin related protein protein-coding 114721 Skull13 E9|L9.2|QTL-S9.2 - 9 42.65 cM skull morphology 13 unknown 20533 Mm.7248 NM_011403 ENSMUSG00000006574 Slc4a1 Ae1|CD233|Empb3|l11Jus51 - 11 66.29 cM|11 D solute carrier family 4 (anion exchanger), member 1 protein-coding 109822 Gig Rpo2-2 - - Gus intermingled gene protein-coding 21652 Mm.258953 NM_009343 ENSMUSG00000024193 Phf1 AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3 - 17 A3.3|17 13.6 cM PHD finger protein 1 protein-coding 100049546 NR_030532 ENSMUSG00000077127 Mir743 Mirn743|mir-743a|mmu-mir-743 - X A7.1|X microRNA 743 ncRNA 320839 9330168M11Rik - - X|X F3 RIKEN cDNA 9330168M11 gene unknown 111976 Geot - - 10 3.04 cM geotaxia unknown 76426 Mm.46148 NM_029608 ENSMUSG00000027505 Fam209 1700029J11Rik - 2|2 H3 family with sequence similarity 209 protein-coding 53856 Mm.19943 NM_016914 ENSMUSG00000027072 Prg3 MBP2|MBPH - 2 D|2 49.45 cM proteoglycan 3 protein-coding 21400 Mm.24245 NM_009326 ENSMUSG00000059540 Tcea2 AI326274|S-II-T1|SII-T1|Tceat - 2 H4|2 103.72 cM transcription elongation factor A (SII), 2 protein-coding 100417557 Gm18687 - - 4|4 C3 DDB1 and CUL4 associated factor 12 pseudogene pseudo 61526 D8Mit183 - - 8 50.07 cM DNA segment, Chr 8, Massachusetts Institute of Technology 183 unknown 319837 B130016H12Rik - - 14|14 RIKEN cDNA B130016H12 gene protein-coding 63020 D17Mit100 - - 17 13.07 cM DNA segment, Chr 17, Massachusetts Institute of Technology 100 unknown 102465997 NR_106199 ENSMUSG00000099070 Mir8119 Gm27567|mmu-mir-8119 - 4|4 D2.2 microRNA 8119 ncRNA 105246343 XR_877075 Gm41644 - - 17 E4|17 predicted gene, 41644 ncRNA 108030 Mm.268025 NM_001033223 ENSMUSG00000019906 Lin7a AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1 - 10|10 D1 lin-7 homolog A (C. elegans) protein-coding 100048985 Mm.330809 XR_375271 Gm14321 - - 2|2 H3 predicted gene 14321 unknown 435877 Vmn2r-ps25 EG435877|Gm5719 - 5 G3|5 vomeronasal 2, receptor, pseudogene 25 pseudo 102636916 XR_871053 Gm33857 - - 9 E3.3|9 predicted gene, 33857 ncRNA 102639032 Gm35445 - - 13|13 predicted gene, 35445 ncRNA 102640472 XR_873123 Gm36525 - - 13 A1|13 predicted gene, 36525 ncRNA 100039304 Gm2148 - - 3|3 A2 predicted gene 2148 pseudo 27703 D1Dau11 - - - DNA segment, Chr 1, DA Underhill 11 unknown 102632290 Gm30404 - - 7|7 predicted gene, 30404 ncRNA 19204 Mm.89389 NM_001081211 ENSMUSG00000056529 Ptafr PAFR - 4 D2.3|4 65.56 cM platelet-activating factor receptor protein-coding 111722 Mpmv37 Mpmv-37 - - modified polytropic murine leukemia virus 37 other 105245515 XR_873501 Gm40962 - - 13 B1|13 predicted gene, 40962 ncRNA 102641541 LOC102641541 - - - uncharacterized LOC102641541 ncRNA 97204 C76686 - - - expressed sequence C76686 unknown 382483 Gm11996 - - 11|11 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 97054 C77135 - - - expressed sequence C77135 unknown 102642938 LOC102642938 - - - heterogeneous nuclear ribonucleoproteins A2/B1 protein-coding 27212 NR_000004 ENSMUSG00000064767 Snord35b Rnu35b|U35 - 7|7 B3 small nucleolar RNA, C/D box 35B snoRNA 360056 D17Jcs62 - - - DNA segment, Chr 17, John C. Schimenti 62 unknown 22612 Mm.4558 NM_009535 ENSMUSG00000014932 Yes1 Yes|p61-Yes - 5 B1|5 17.33 cM YES proto-oncogene 1, Src family tyrosine kinase protein-coding 105242635 XR_868995 Gm38794 - - 6 B1|6 predicted gene, 38794 ncRNA 50791 Mm.332231 NM_015823 ENSMUSG00000040003 Magi2 AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705 - 5|5 A3 membrane associated guanylate kinase, WW and PDZ domain containing 2 protein-coding 108021851 LOC108021851 TES|TESCO - - Sox9 testis enhancer TES biological-region 102640577 Mm.115867 Gm28515 - - 8|8 predicted gene 28515 ncRNA 108167552 XR_001778648 Gm46051 - - 8 D3|8 predicted gene, 46051 ncRNA 100039799 Gm12962 Gm2430 - 4 D2.3|4 predicted gene 12962 protein-coding 96935 Mm.331052 NM_144796 ENSMUSG00000038576 Susd4 AI848994|E430021N18Rik|N28096 - 1|1 H5 sushi domain containing 4 protein-coding 194401 Mm.122399 NM_153396 ENSMUSG00000051586 Mical3 C130040D16Rik|Mical-3|mKIAA1364 - 6|6 F1 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 52443 Mm.473730 NM_198831 ENSMUSG00000030706 Mrpl48 1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48 - 7|7 E2 mitochondrial ribosomal protein L48 protein-coding 100503399 Mm.484082 XR_373277 Gm19673 - - 1 A5|1 9.58 cM predicted gene, 19673 ncRNA 98800 AA517729 - - - expressed sequence AA517729 unknown 51860 D17Ggc2e - - - DNA segment, Chr 17, G. Consalez 2, expressed unknown 105000 Mm.101525 NM_028821 ENSMUSG00000042523 Dnal1 1700010H15Rik|AW121714|Dnalc1|E330027P08Rik - 12|12 D1 dynein, axonemal, light chain 1 protein-coding 102639619 XR_375201 Gm35886 - - 2 H3|2 predicted gene, 35886 ncRNA 102467401 n-TVaac6 n-Tv6 - 13 A3.1|13 nuclear encoded tRNA valine 6 (anticodon AAC) tRNA 666321 Gm8045 EG666321 - 13|13 A3.1 preferentially expressed antigen in melanoma-like pseudogene pseudo 67163 Mm.22109 NM_026009 ENSMUSG00000078622 Ccdc47 2610204L23Rik|C88307|asp4|calumin - 11|11 E1 coiled-coil domain containing 47 protein-coding 75377 Mm.402100 NR_045736 ENSMUSG00000115540 4930597G03Rik - - 14|14 C1 RIKEN cDNA 4930597G03 gene ncRNA 100417731 Gm18791 - - 2|2 B developmental pluripotency associated 4 pseudogene pseudo 665019 Gm11897 - - 4|4 A3 ZW10 homolog, centromere/kinetochore protein pseudogene pseudo 77219 Mm.246127 NM_029880 ENSMUSG00000072946 Ptgr2 1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1 - 12|12 D1 prostaglandin reductase 2 protein-coding 62469 D19Mit117 - - 19 19.52 cM DNA Segment, Chr 19 Massachusetts Institute of Technology 117 unknown 61240 D1Mit279 - - 1 29.55 cM DNA segment, Chr 1, Massachusetts Institute of Technology 279 unknown 621096 Vmn2r-ps86 EG621096 - 7|7 D3 vomeronasal 2, receptor, pseudogene 86 pseudo 26425 Mm.29037 NM_011955 ENSMUSG00000022503 Nubp1 - - 16 A1|16 5.61 cM nucleotide binding protein 1 protein-coding 101055752 LOC101055752 - - X E1 histone deacetylase 1 pseudogene pseudo 383725 Gm13702 - - 2|2 D predicted gene 13702 pseudo 102638082 XR_379010 Gm34730 Gm45649 - 8 B3.1|8 predicted gene, 34730 ncRNA 12350 Mm.300 NM_007606 ENSMUSG00000027559 Car3 BB219044|Ca3|Car-3 - 3 A1|3 3.22 cM carbonic anhydrase 3 protein-coding 28154 D16Ium9e D16Ium9 - - DNA segment, Chr 16, Indiana University Medical 9, expressed unknown 667048 Gm14130 EG667048 - 2|2 G3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100504357 Gm14974 - - X|X 19.25 cM predicted gene 14974 ncRNA 100035737 Pgia24 - - - proteoglycan induced arthritis 24 unknown 61531 D8Mit191 - - 8 21.16 cM DNA segment, Chr 8, Massachusetts Institute of Technology 191 unknown 102633278 XR_379212 Gm31140 - - 9 A4|9 predicted gene, 31140 ncRNA 636972 Gm7195 - - 1|1 E2.3 zinc finger protein 51 pseudogene pseudo 111816 Iapls2-19 - - - intracisternal A particle, lymphocyte specific 2-19 other 56857 Mm.440037 NM_020258 ENSMUSG00000032122 Slc37a2 G3PP|Slc37a1|cI-2|ci2 - 9|9 A4 solute carrier family 37 (glycerol-3-phosphate transporter), member 2 protein-coding 70556 Mm.41877 NM_027460 ENSMUSG00000028982 Slc25a33 5730438N18Rik|Pnc1 - 4|4 E2 solute carrier family 25, member 33 protein-coding 15127 Hbb - - 7 E2|7 hemoglobin beta chain complex other 70960 Mm.410834 NR_045361 4921531P14Rik 1700108N05Rik - 18|18 E3 RIKEN cDNA 4921531P14 gene ncRNA 634882 NM_001289875 Itih5l-ps Gm386|Itih5l - X|X F3 inter-alpha (globulin) inhibitor H5-like, pseudogene protein-coding 723919 NR_029974 ENSMUSG00000070138 Mir452 Mirn452|mir-452|mmu-mir-452 - X|X A7.3 microRNA 452 ncRNA 18201 Mm.3059 NM_010945 ENSMUSG00000028245 Nsmaf AA959567|C630007J05|Fan - 4|4 A1 neutral sphingomyelinase (N-SMase) activation associated factor protein-coding 78634 Mm.116871 NM_024279 ENSMUSG00000010435 Spaca7 1700094C09Rik - 8|8 A1.1 sperm acrosome associated 7 protein-coding 75471 Mm.23522 NM_001081095 ENSMUSG00000028287 1700009N14Rik AI429145 - 4|4 A5 RIKEN cDNA 1700009N14 gene protein-coding 105243637 XR_880345 Gm11755 - - 11 E2|11 83.34 cM predicted gene 11755 ncRNA 56223 Mm.31708 NM_019569 ENSMUSG00000029707 Fscn3 - - 6|6 A3.3 fascin actin-bundling protein 3 protein-coding 621961 Anp32b-ps1 Gm13129 - 4|4 E1 Bacidic (leucine-rich) nuclear phosphoprotein 32 family, member B, pseudogene 1 pseudo 224481 Mm.226554 NM_146074 ENSMUSG00000036983 Tfb1m AI429207 - 17|17 A1 transcription factor B1, mitochondrial protein-coding 96878 C78282 - - - expressed sequence C78282 unknown 105246574 XR_877854 Gm41846 - - 19 C3|19 predicted gene, 41846 ncRNA 667616 Gm8728 EG667616 - 7|7 A3 NLR family, pyrin domain containing 4E pseudogene pseudo 434377 Mm.379669 NM_001004190 ENSMUSG00000045519 Zfp560 2310030G09Rik|Znf560 - 9|9 A3 zinc finger protein 560 protein-coding 102632440 XR_386081 Gm30512 - - 18 A1|18 predicted gene, 30512 ncRNA 77604 Mm.474129 NM_198957 ENSMUSG00000052137 Rbm12b2 AV299215|C430048L16Rik|Rbm12bb - 4|4 A1 RNA binding motif protein 12 B2 protein-coding 69533 Mm.30967 NM_027105 ENSMUSG00000071471 Krtap26-1 2310002B14Rik|AI507462 - 16|16 C3.3 keratin associated protein 26-1 protein-coding 11553 Mm.57205 NM_007418 ENSMUSG00000045318 Adra2c Adra-2c|[a]2C|alpha2-C4|alpha2C - 5 B2|5 18.09 cM adrenergic receptor, alpha 2c protein-coding 100038486 Mm.405574 Gm10742 - - 3 A1|3 predicted gene 10742 unknown 492901 Fpli - - 3 68.43 cM fasting plasma insulin unknown 102467501 n-TCgca35 n-Tc35 - 6 B2.3|6 nuclear encoded tRNA cysteine 35 (anticodon GCA) tRNA 735286 NR_035406 ENSMUSG00000096624 Mir467a-1 Mir467a|Mirn467|Mirn467a|Mirn467a-1|mir-467a-1|mmu-mir-467|mmu-mir-467a|mmu-mir-467a-1 - 2 A1|2 microRNA 467a-1 ncRNA 114289 Manh22 QTL-SH15.2 - - mandible shape 22 unknown 102988 AU021864 - - - expressed sequence AU021864 unknown 18813 Mm.4742 NM_011119 ENSMUSG00000025364 Pa2g4 38kDa|AA672939|Ebp1|Plfap - 10|10 D3 proliferation-associated 2G4 protein-coding 620665 Gm6171 EG620665 - 12|12 F2 predicted gene 6171 pseudo 100042828 Gm4052 - - 13|13 C1 predicted gene 4052 pseudo 21030 T(10;11)75H - - - reciprocal translocation, Chr 10 and 11, Harwell 75 other 14964 Mm.439675 NM_010380 ENSMUSG00000073411 H2-D1 H-2D|H2-D - 17 B1|17 18.61 cM histocompatibility 2, D region locus 1 protein-coding 100043600 Mm.407440 XR_105713 Gm4544 - - 15 F3|15 predicted gene 4544 ncRNA 100503685 Gm15567 - - 7|7 15.86 cM predicted gene 15567 ncRNA 100217435 NR_028535 Snord90 MBII-295 - 2 B|2 small nucleolar RNA, C/D box 90 snoRNA 99817 AU022881 - - - expressed sequence AU022881 protein-coding 109368 Eye2 - - - eye weight 2 unknown 102631948 XR_391618 Gm30149 - - 7 D1|7 predicted gene, 30149 ncRNA 668951 Gm11473 - - 2|2 H3 predicted gene 11473 pseudo 11980 Mm.153230 NM_009727 ENSMUSG00000037685 Atp8a1 AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI - 5|5 C3.1 ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 protein-coding 68035 Mm.401747 NM_133693 ENSMUSG00000036733 Rbm42 1700003D06Rik|3100004P22Rik - 7|7 B1 RNA binding motif protein 42 protein-coding 667063 Mm.90231 NM_001101603 ENSMUSG00000091297 Gm8439 EG667063|Gm1664 - 4|4 D2.2 predicted gene 8439 protein-coding 57296 Mm.273152 NM_026545 ENSMUSG00000030591 Psmd8 6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433 - 7|7 B1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 protein-coding 79401 Mm.23520 NM_030237 ENSMUSG00000046957 Spz1 1700027M20Rik|AI429130 - 13|13 C3 spermatogenic leucine zipper 1 protein-coding 109279838 LOC109279838 - - - Fgfr2 promoter region biological-region 100862375 Mm.489765 NM_001359159 ENSMUSG00000022066 Entpd4b Gm21685 - 14 D2|14 ectonucleoside triphosphate diphosphohydrolase 4B protein-coding 100035274 Ath29 Ath22 - 9 35.3 cM atherosclerosis 29 unknown 102640784 XR_385436 Gm36768 - - 17 A3.1|17 predicted gene, 36768 ncRNA 69710 Mm.277687 NM_027180 ENSMUSG00000032812 Arap1 2410002L19Rik|Centd2|mKIAA0782 - 7|7 E2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding 52537 D18Ertd155e - - 18 38.88 cM DNA segment, Chr 18, ERATO Doi 155, expressed unknown 100861492 NR_046145 ENSMUSG00000095183 n-R5s138 Rn5s21 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 138 rRNA 546123 Mm.445255 NM_001167587 ENSMUSG00000091411 Gm5916 EG546123 - 9|9 A4 predicted gene 5916 protein-coding 68694 Mm.290624 NM_026811 ENSMUSG00000068889 Lce1e 1110031B11Rik|AI507275 - 3|3 F1 late cornified envelope 1E protein-coding 52723 D14Ertd528e - - - DNA segment, Chr 14, ERATO Doi 528, expressed unknown 108168706 LOC108168706 - - - 60S acidic ribosomal protein P1 pseudogene pseudo 78890 Mm.98522 NM_030208 ENSMUSG00000029097 Trmt44 2310079F23Rik|Mettl19 - 5|5 B2-B3 tRNA methyltransferase 44 protein-coding 62080 D10Mit65 - - 10 41.33 cM DNA segment, Chr 10, Massachusetts Institute of Technology 65 unknown 546780 Gm11462 - - 2|2 H3 predicted gene 11462 pseudo 258261 Mm.303171 NM_207153 ENSMUSG00000060765 Olfr325 MOR275-5 - 11|11 B1.3 olfactory receptor 325 protein-coding 102636816 Scgb2b14-ps Abpbg14-ps - 7 B1|7 secretoglobin, family 2B, member 14, pseudogene pseudo 621462 Gm6227 EG621462 - 6|6 F1 predicted gene 6227 pseudo 21073 T(12;17)4Rk T4Rk - - reciprocal translocation, Chr 12 and 17, Roderick 4 other 70744 Mm.394573 6330403L08Rik - - 5|5 G2 RIKEN cDNA 6330403L08 gene ncRNA 69640 Mm.458559 NM_178618 ENSMUSG00000042377 Fam83g 2310040C09Rik|AI506990|wly - 11|11 B2 family with sequence similarity 83, member G protein-coding 100042405 Gm10282 - - 8|8 B3.3 high mobility group nucleosomal binding domain 2 pseudogene pseudo 102634063 XR_878231 ENSMUSG00000085536 Gm14950 - - X E3|X 49.81 cM predicted gene 14950 ncRNA 108269 Ss18-ps1 - - - SS18, nBAF chromatin remodeling complex subunit, pseudogene 1 pseudo 105242990 Gm39046 - - 7|7 predicted gene, 39046 ncRNA 104796139 NR_128569 ENSMUSG00000098621 Gm27740 Mir6967-2|mmu-mir-6967-2 - 17|17 B1 predicted gene, 27740 ncRNA 102633340 XR_382463 Gm31188 - - 13 B1|13 predicted gene, 31188 ncRNA 240087 Mm.218511 NM_001010833 ENSMUSG00000061607 Mdc1 6820401C03|AA413496|Nfbd1|mKIAA0170 - 17|17 B1 mediator of DNA damage checkpoint 1 protein-coding 52158 D18Ggc2e - - - DNA segment, Chr 18, G. Consalez 2, expressed unknown 74892 Mm.107630 NM_029113 ENSMUSG00000022288 4930447A16Rik - - 15|15 B3.1 RIKEN cDNA 4930447A16 gene protein-coding 60726 DXMit27 - - X 5.98 cM DNA segment, Chr X, Massachusetts Institute of Technology 27 unknown 21959 Mm.206798 NM_013694 ENSMUSG00000043050 Tnp2 TP2|Tp-2 - 16 A1|16 5.83 cM transition protein 2 protein-coding 102334 Mm.12459 NM_133971 ENSMUSG00000031508 Ankrd10 4833425P12Rik|AW549277 - 8|8 A1.1 ankyrin repeat domain 10 protein-coding 108167521 XR_001778512 Gm46031 - - 8 A1.1|8 predicted gene, 46031 ncRNA 61753 D4Mit250a D4Mit250 - 4 64.91 cM DNA segment, Chr 4, Massachusetts Institute of Technology 250a unknown 105243698 Mm.403286 XR_878134 Gm39523 - - X C1|X predicted gene, 39523 ncRNA 100040221 Gm15149 - - X|X F3 predicted gene 15149 pseudo 108562 Iapls1-35 - - - intracisternal A particle, lymphocyte specific 1-35 other 20955 Mm.1517 NM_011515 ENSMUSG00000051412 Vamp7 Sybl1|TI-VAMP|VAMP-7 - X|X vesicle-associated membrane protein 7 protein-coding 751546 NR_030418 ENSMUSG00000076269 Mir374b Mir374|Mirn374|mir-374b|mmu-mir-374|mmu-mir-374b - X D|X microRNA 374b ncRNA 108168564 XM_017318766 LOC108168564 - - Y C1 X-linked lymphocyte-regulated protein PM1-like protein-coding 100416238 Gm17993 - - 8|8 B1.3 ribosomal protein S3 pseudogene pseudo 638247 Mm.382600 NR_015472 ENSMUSG00000097006 9530082P21Rik E030034P13Rik - 17|17 A3.3 RIKEN cDNA 9530082P21 gene ncRNA 96908 C81141 - - - expressed sequence C81141 unknown 99681 Mm.316671 NM_001163098 ENSMUSG00000052415 Tchh AHF|AI597080|Thh - 3|3 F2.1 trichohyalin protein-coding 257816 Olfr989-ps1 EG257816|GA_x5J8B7W531T-1286425-1285652|Gm5021 - 2 D|2 olfactory receptor 989, pseudogene 1 pseudo 52821 D5Bwg1346e - - - DNA segment, Chr 5, Brigham & Women's Genetics 1346 expressed unknown 102635973 Akirin1-ps Gm11442 - 11 C|11 51.34 cM akirin 1, pseudogene pseudo 54366 Mm.218891 NM_018761 ENSMUSG00000038816 Ctnnal1 ACRP|AI616177|AW545119|C86009|Catnal1 - 4|4 B3 catenin (cadherin associated protein), alpha-like 1 protein-coding 93706 Mm.247203 NM_033581 ENSMUSG00000102918 Pcdhgc3 PC43|Pcdh2 - 18 B3|18 19.67 cM protocadherin gamma subfamily C, 3 protein-coding 102466254 NR_106164 ENSMUSG00000098344 Mir3473f Gm27846|mmu-mir-3473f - 1|1 E2.1 microRNA 3473f ncRNA 105244608 Gm40196 - - 11|11 predicted gene, 40196 ncRNA 666578 Gm8173 EG666578 - 1 E2.1|1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo 105247298 XR_882376 LOC105247298 - - - uncharacterized LOC105247298 ncRNA 327655 Mm.386076 NM_178795 ENSMUSG00000033526 Ppip5k1 B430315C20Rik|Hisppd2a|mKIAA0377 - 2|2 E5 diphosphoinositol pentakisphosphate kinase 1 protein-coding 74065 Mm.399508 NR_040502 ENSMUSG00000085796 4933406D12Rik - - 2|2 G1 RIKEN cDNA 4933406D12 gene ncRNA 105245929 XR_875179 Gm41307 - - 15 B3.1|15 predicted gene, 41307 ncRNA 667537 Gm8692 EG667537 - X|X A7.3 predicted gene 8692 pseudo 18624 Mm.69751 NM_008820 ENSMUSG00000063931 Pepd Pep-4|Pep4|dal - 7 B2|7 20.7 cM peptidase D protein-coding 20476 Mm.57138 NM_011384 ENSMUSG00000021099 Six6 Optx2|Six9 - 12|12 C3 sine oculis-related homeobox 6 protein-coding 18988 Mm.436650 NM_011139 ENSMUSG00000032015 Pou2f3 Epoc-1|Oct-11a|Oct11|Otf-11|Otf11|Skin|Skin-1a|Skn-1a|Skn-li - 9 A5.1|9 24.21 cM POU domain, class 2, transcription factor 3 protein-coding 109790 Act5 - - - actin related gene 5 protein-coding 108414 Xmmv18 Env-18|Xmmv-18 - - xenotropic-MCF leukemia virus 18 other 102636248 XR_001778609 Gm33367 - - 8 C3|8 predicted gene, 33367 ncRNA 105245179 Mm.404339 XR_871733 Gm20513 - - 17|17 17.98 cM predicted gene 20513 ncRNA 77516 Mm.270706 XR_001783259 9330198N18Rik - - 2|2 B RIKEN cDNA 9330198N18 gene ncRNA 100034748 Mm.328878 NM_001358019 ENSMUSG00000025727 A930017K11Rik A93001711Rik - 17|17 A3.3 RIKEN cDNA A930017K11 gene protein-coding 330503 Mm.434058 NM_001033540 ENSMUSG00000066647 Gm5113 B430201F14|EG330503 - 7|7 B1 predicted gene 5113 protein-coding 102640657 XR_388036 Gm36671 - - 8 E1|8 predicted gene, 36671 ncRNA 108357 Olfr37 mOR37A - - olfactory receptor 37 cluster other 102631572 Mm.402570 XR_389102 Gm11685 Gm29875 - 11 E1|11 predicted gene 11685 ncRNA 100036255 Brmth6 - - 7 81.85 cM behavioral response to methamphetamines 6 unknown 109279879 LOC109279879 Mm99 - - VISTA enhancer mm99 biological-region 269338 Mm.246131 NM_147153 ENSMUSG00000027291 Vps39 A230065P22Rik|AW743070|Vam6|Vam6P|mVam6 - 2|2 E5 VPS39 HOPS complex subunit protein-coding 97670 Mm.205258 D17892 - - - expressed sequence D17892 unknown 100036245 Ethm3 - - 7 63.44 cM ethanol induced thermoregulation 3 unknown 107981 Amh-rs3 - - - anti-Mullerian hormone, related sequence 3 protein-coding 102633096 XR_384152 Gm31006 - - 15 D2|15 predicted gene, 31006 ncRNA 102637685 Mm.404895 Gm16239 - - 10|10 51.1 cM predicted gene 16239 ncRNA 102636646 Gm33654 - - 12 D2|12 predicted gene, 33654 pseudo 622531 Gm6330 EG622531 - 15|15 B1 predicted gene 6330 pseudo 105245398 XR_873195 Gm40860 - - 13 A3.2|13 predicted gene, 40860 ncRNA 665183 Gm7531 EG665183 - 17|17 A3.2 potassium inwardly-rectifying channel, subfamily K, member 6 pseudogene pseudo 108167920 XR_001780292 LOC108167920 - - 11 D uncharacterized LOC108167920 ncRNA 373852 Mm.466817 NR_015501 ENSMUSG00000074782 4833422C13Rik - - 13 C3|13 RIKEN cDNA 4833422C13 gene ncRNA 18050 Mm.439740 NM_008693 ENSMUSG00000066515 Klk1b3 Ngfg|gamma-NGF|mGk-3 - 7 B3|7 28.71 cM kallikrein 1-related peptidase b3 protein-coding 105247085 Gm42248 - - 2|2 predicted gene, 42248 ncRNA 102632155 Mm.366544 XR_001785029 Gm24105 - - 5 G3|5 predicted gene, 24105 ncRNA 100418046 Gm18965 - - 6|6 F1 family with sequence similarity 171, member A1 pseudogene pseudo 74020 Mm.326240 NM_028719 ENSMUSG00000032564 Cpne4 3632411M23Rik|4933406O10Rik - 9|9 F1 copine IV protein-coding 100525 AA517122 - - - expressed sequence AA517122 unknown 105246288 Gm41592 - - 17|17 predicted gene, 41592 ncRNA 102631903 XR_390216 Gm30120 - - 4 E2|4 predicted gene, 30120 ncRNA 102638254 LOC102638254 - - 2 E2 putative 60S ribosomal protein L37a pseudo 791265 Mm.145518 Gm9984 - - 17 E1.1|17 predicted gene 9984 unknown 102636391 Gm33469 - - Y|Y predicted gene, 33469 ncRNA 244049 Mm.217412 NM_001024703 ENSMUSG00000032776 Mctp2 Gm489 - 7|7 D1 multiple C2 domains, transmembrane 2 protein-coding 100503935 Gm15101 - - X|X 68.46 cM predicted gene 15101 pseudo 100417489 Gm17137 - - 7|7 F3 LAG1 homolog, ceramide synthase 2 pseudogene pseudo 69332 Mm.120271 NM_027042 ENSMUSG00000027927 Lelp1 1700012F11Rik - 3|3 F1 late cornified envelope-like proline-rich 1 protein-coding 81601 Mm.228930 NM_178637 ENSMUSG00000024926 Kat5 AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60 - 19|19 A K(lysine) acetyltransferase 5 protein-coding 110420 Dis2 - - - MAIDS Du5H/Mo-LTR integration site 2 protein-coding 28010 Mm.250504 NM_133873 ENSMUSG00000029022 Miip AA553001|AI853621|D4Wsu114e|IIP45 - 4 E1-E2|4 78.56 cM migration and invasion inhibitory protein protein-coding 667883 Gm8858 EG667883 - X|X C1 predicted gene 8858 pseudo 108216 Zfy2-ps1 - - - zinc finger protein Y-linked, pseudogene 1 pseudo 632685 Gm7091 EG632685 - X|X F1 ribosomal protein S7 pseudogene pseudo 13863 Mm.12867 NM_007947 ENSMUSG00000026937 Lcn5 E-RABP|Erabp|MEP10 - 2|2 A3 lipocalin 5 protein-coding 665988 Vmn2r-ps131 EG665988|Gm7878 - 17|17 A3.3 vomeronasal 2, receptor, pseudogene 131 pseudo 75690 Mm.30200 NM_001290316 ENSMUSG00000070604 Vsig10l - - 7|7 B3 V-set and immunoglobulin domain containing 10 like protein-coding 667112 Gm8463 EG667112 - 7|7 E2 ribosomal protein S8 pseudogene pseudo 100035153 Bntq12 - - - bone traits QTL 12 unknown 17766 Mm.118846 NM_008637 ENSMUSG00000036639 Nudt1 Mth1 - 5|5 G2 nudix (nucleoside diphosphate linked moiety X)-type motif 1 protein-coding 100035057 W3q1 - - - weight 3 weeks QTL 1 unknown 18425 Oua1 Oua-1 - - ouabain resistance 1 protein-coding 27380 Mm.103652 NM_013774 ENSMUSG00000079007 Tcl1b4 AA675342 - 12|12 E T cell leukemia/lymphoma 1B, 4 protein-coding 102640305 XR_377350 Gm36406 Gm43996 - 6 A1|6 predicted gene, 36406 ncRNA 110895 Mm.108602 NM_177084 ENSMUSG00000026065 Slc9a4 AW990558|D730009J23Rik|NHE4 - 1 B|1 19.51 cM solute carrier family 9 (sodium/hydrogen exchanger), member 4 protein-coding 27921 D16Ium44 - - 16 30.6 cM DNA segment, Chr 16, Indiana University Medical 44 unknown 105243098 XR_870078 Gm39119 Gm45180 - 7 F5|7 predicted gene, 39119 ncRNA 54380 Mm.274232 NM_018817 ENSMUSG00000039354 Smarcal1 6030401P21Rik|AI851716|Mharp - 1 C3|1 36.72 cM SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 protein-coding 80782 Mm.6180 NM_030599 ENSMUSG00000079298 Klrb1b Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d - 6 F3|6 63.09 cM killer cell lectin-like receptor subfamily B member 1B protein-coding 61152 D11Mit1002 D10Mit81 - 11 58.88 cM DNA segment, Chr 11, Massachusetts Institute of Technology 1002 unknown 102637199 Gm34073 - - 18|18 predicted gene, 34073 ncRNA 114164 Cons4 - - - consumption-saccharin intake 4 unknown 18330 Mm.484338 NM_147027 ENSMUSG00000072707 Olfr31 MOR274-1|MTPCR53 - 14|14 A1 olfactory receptor 31 protein-coding 60954 DXMit81 - - X 20.59 cM DNA segment, Chr X, Massachusetts Institute of Technology 81 unknown 493137 Lxw3 - - 1 52.58 cM lupus BXSB x NZW 3 unknown 100502785 Gm19371 - - 15|15 8.25 cM 60S ribosomal protein L37-like pseudo 338352 Mm.383528 NM_001037906 ENSMUSG00000055409 Nell1 B230343H07Rik|l7R6 - 7|7 B4 NEL-like 1 protein-coding 102636167 XR_376014 Gm33310 - - 3 G1|3 predicted gene, 33310 ncRNA 102634388 XR_880377 LOC102634388 - - X A3.1 uncharacterized LOC102634388 ncRNA 65079 Mm.40149 NM_022982 ENSMUSG00000043811 Rtn4r NOGOR|NgR|NgR1 - 16|16 A3 reticulon 4 receptor protein-coding 102631697 Mm.432355 NR_155291 Gm14664 - - X|X 34.01 cM predicted gene 14664 ncRNA 100041708 XM_017318886 LOC100041708 - - 1|1 nuclear body protein SP140-like protein protein-coding 100039636 Mm.30155 NR_037854 Atp6v0c-ps2 Atp6c-rs2|Atp6c3|Atp6l-ps2|Atp6v0c-rs2|Atpl-rs2|Gm15487|MGPLlambda1-3 - 6 B1|6 ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2 pseudo 100416523 Gm18144 - - 14|14 A1 ribosomal protein L13 pseudogene pseudo 12709 Mm.16831 NM_021273 ENSMUSG00000001270 Ckb B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb - 12 F1|12 61.09 cM creatine kinase, brain protein-coding 403348 D130084N16Rik - - - RIKEN cDNA D130084N16 gene protein-coding 19271 Mm.330393 NM_008982 ENSMUSG00000025314 Ptprj AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1 - 2 E1|2 50.19 cM protein tyrosine phosphatase, receptor type, J protein-coding 105317033 H19-icr H19-DMD|H19-DMR|Ic1|Icr1 - - H19/Igf2 imprinting control region biological-region 100417184 Gm14977 - - X|X E3 crumbs homolog 1 pseudogene pseudo 100504299 Selenok-ps7 Gm20159 - 5 G2|5 85.17 cM selenoprotein K, pseudogene 7 pseudo 107480 Emv70 - - - endogenous ecotropic MuLV 70 protein-coding 100042702 Obox4-ps12 Gm3977 - 7 A1|7 oocyte specific homeobox 4, pseudogene 12 pseudo 432628 Mm.154078 NM_001033488 ENSMUSG00000037336 Mfsd2b Gm1964 - 12|12 A1.1 major facilitator superfamily domain containing 2B protein-coding 66500 Mm.34550 NM_023214 ENSMUSG00000054414 Slc30a7 1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2 - 3|3 G1 solute carrier family 30 (zinc transporter), member 7 protein-coding 111726 Iapt26 - - - intracisternal A particle, tumor specific 26 other 66459 Mm.44201 NM_025574 ENSMUSG00000043162 Pyurf 2610022G08Rik|AI847956|Prey - 6|6 B3 Pigy upstream reading frame protein-coding 102635304 XR_373553 Gm29065 - - 1 C4|1 predicted gene 29065 ncRNA 102465888 NR_106173 ENSMUSG00000098457 Mir8097 Gm27497|mmu-mir-8097 - 15|15 B3.1 microRNA 8097 ncRNA 232078 Mm.37547 NM_178413 ENSMUSG00000054474 Thnsl2 BC051244|TSH2 - 6|6 C1 threonine synthase-like 2 (bacterial) protein-coding 100216455 Mm.484816 NM_001142410 ENSMUSG00000079008 Gm14124 EG640962|Gm10749 - 2|2 G3 predicted gene 14124 protein-coding 12313 Mm.285993 NM_009790 ENSMUSG00000001175 Calm1 AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1 - 12|12 E calmodulin 1 protein-coding 100504731 Gm20377 Gm13077 - 4|4 E2 predicted gene, 20377 pseudo 434903 Mm.213584 NM_001033492 ENSMUSG00000035427 Mageb4 CN716893|Mage-b4|mMage-b4 - X|X C1 melanoma antigen, family B, 4 protein-coding 13016 Mm.7286 NM_013502 ENSMUSG00000037373 Ctbp1 BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E - 5 B1|5 17.52 cM C-terminal binding protein 1 protein-coding 28028 Mm.30052 NM_178603 ENSMUSG00000044018 Mrpl50 AA408971|AI317351|D4Wsu125e - 4 B1|4 26.54 cM mitochondrial ribosomal protein L50 protein-coding 16490 Mm.39285 NM_008417 ENSMUSG00000040724 Kcna2 Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2 - 3 F2.3|3 46.61 cM potassium voltage-gated channel, shaker-related subfamily, member 2 protein-coding 100034786 Bwq5 - - 2 71.02 cM body weight, QTL 5 unknown 78488 1810056I18Rik - - 12|12 RIKEN cDNA 1810056I18 gene protein-coding 102229 AU021186 - - - expressed sequence AU021186 unknown 100418286 Gm19118 - - 13|13 B3 upstream binding transcription factor, RNA polymerase I pseudogene pseudo 102637926 XR_387587 Gm16108 - - 5 F|5 55.95 cM predicted gene 16108 ncRNA 217369 Mm.20122 NM_145440 ENSMUSG00000039321 Uts2r Gpr14|UR-2-R|UTR|UTR2 - 11|11 E2 urotensin 2 receptor protein-coding 100503250 Gm19610 - - 5|5 44.78 cM predicted gene, 19610 ncRNA 22311 Mm.482571 NM_001105063 ENSMUSG00000096743 Vmn2r32 V2r5 - 7|7 A1 vomeronasal 2, receptor 32 protein-coding 545817 Mm.482474 NM_001160265 ENSMUSG00000029541 Cyp2w1 Gm455 - 5|5 G2 cytochrome P450, family 2, subfamily w, polypeptide 1 protein-coding 50917 Mm.1786 NM_016722 ENSMUSG00000015027 Galns mFLJ00319 - 8|8 E1 galactosamine (N-acetyl)-6-sulfate sulfatase protein-coding 11853 Mm.262 NM_007484 ENSMUSG00000002233 Rhoc AI324259|Arh9|Arhc - 3|3 F2.2 ras homolog family member C protein-coding 360102 D17Brg18 - - - DNA segment, Chr 17, David E. Bergstrom 18 unknown 100503425 Gm17469 - - X|X 49.81 cM predicted gene, 17469 protein-coding 105244988 XR_001778756 Gm40505 - - 8 B3.3|8 predicted gene, 40505 ncRNA 23796 Mm.29368 NM_011784 ENSMUSG00000044338 Aplnr APJ|Agtrl1|msr/apj - 2|2 D apelin receptor protein-coding 545477 Mm.379973 NM_001080811 ENSMUSG00000078998 Bpifa6 EG545477|Gm5840|Splunc6 - 2|2 H1 BPI fold containing family A, member 6 protein-coding 62597 D13Mit126 - - 13 45.05 cM DNA segment, Chr 13, Massachusetts Institute of Technology 126 unknown 102639430 XR_374165 Gm35745 - - 2 A3|2 predicted gene, 35745 ncRNA 111289 Hmgn1-rs9 Hmg14-rs9 - - high mobility group nucleosomal binding domain 1, related sequence 9 pseudo 109934 Mm.258939 NM_198018 ENSMUSG00000017631 Abr - - 11 B5|11 45.92 cM active BCR-related gene protein-coding 102466633 NR_105777 ENSMUSG00000098676 Mir6359 Gm27328|mmu-mir-6359 - 18|18 E4 microRNA 6359 ncRNA 320812 Mm.421365 C230071I02Rik - - 11|11 RIKEN cDNA C230071I02 gene protein-coding 108168555 XM_017318752 ENSMUSG00000096650 LOC108168555 - - Y B X-linked lymphocyte-regulated protein PM1-like protein-coding 668166 Mm.426145 NM_001081473 ENSMUSG00000073062 Zxdb Zxda - X|X C3 zinc finger, X-linked, duplicated B protein-coding 102631822 XR_389239 Gm30062 - - 11 E2|11 predicted gene, 30062 ncRNA 109272 Mm.147208 NM_175418 ENSMUSG00000020061 Mybpc1 8030451F13Rik - 10|10 C1 myosin binding protein C, slow-type protein-coding 12579 Mm.423094 NM_007670 ENSMUSG00000073802 Cdkn2b AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b - 4 C4|4 42.15 cM cyclin dependent kinase inhibitor 2B protein-coding 15024 Mm.426031 NM_010395 ENSMUSG00000079491 H2-T10 H-2T10 - 17 B1|17 18.93 cM histocompatibility 2, T region locus 10 protein-coding 102639630 XR_381605 Gm35895 - - 12 C1|12 predicted gene, 35895 ncRNA 105242493 LOC105242493 - - - tumor necrosis factor receptor type 1-associated DEATH domain protein protein-coding 399572 Mm.466850 E430010N07Rik - - - RIKEN cDNA E430010N07 gene protein-coding 100035065 W6q15 - - - weight 6 weeks QTL 15 unknown 70028 Mm.23230 NM_026700 ENSMUSG00000022946 Dopey2 0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933 - 16|16 C4 dopey family member 2 protein-coding 100416135 Gm17933 - - 6|6 A3.1 SET translocation pseudogene pseudo 234852 Mm.41596 NM_145606 ENSMUSG00000000743 Chmp1a 2900018H07Rik|Pcoln3 - 8|8 E1 charged multivesicular body protein 1A protein-coding 100862147 Gm21518 - - Y|Y predicted gene, 21518 protein-coding 108353824 Sox2-srr2 - - - Sox2 SRR2 enhancer biological-region 102633406 XR_380501 Gm31240 - - 10 B5.1|10 predicted gene, 31240 ncRNA 108192 Krt1-ps Krt2-ps - - keratin 1, pseudogene pseudo 13996 Mm.490435 NR_015349 Etohd2 AW491659 - 13 B2|13 ethanol decreased 2 ncRNA 22693 Mm.292690 NM_013705 ENSMUSG00000047473 Zfp30 2610306P15Rik|Zfp-30 - 7 B1|7 17.26 cM zinc finger protein 30 protein-coding 629906 Ighv1-42 EG629906|Gm7015 - 12 F2|12 immunoglobulin heavy variable V1-42 other 319406 D630004L18Rik - - - RIKEN cDNA D630004L18 gene protein-coding 100036284 W6q5 - - - weight 6 weeks QTL 5 unknown 632654 Mm.390492 Ighv7-4 Gm16839|V(13)-b - 12|12 F1 immunoglobulin heavy variable 7-4 other 109585 Paf - - - patchy fur unknown 14460 Mm.335973 NM_008089 ENSMUSG00000031162 Gata1 Gata-1|Gf-1|eryf1 - X A1.1|X 3.59 cM GATA binding protein 1 protein-coding 105245550 XR_873640 Gm40994 - - 13 C1|13 predicted gene, 40994 ncRNA 100862425 LOC100862425 - - - RNA-binding protein EWS-like pseudo 233057 Mm.296864 NM_173738 ENSMUSG00000050855 Zfp940 - - 7|7 B1 zinc finger protein 940 protein-coding 108167594 LOC108167594 - - 1 H4 cytochrome c oxidase subunit 8A, mitochondrial pseudogene pseudo 102632437 Gm30511 - - 4|4 predicted gene, 30511 ncRNA 61938 D5Mit377 - - 5 83.34 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 377 unknown 102633443 XR_380811 Gm31267 - - 10 D2|10 predicted gene, 31267 ncRNA 102632794 XR_391628 Gm30774 - - 7 D1|7 predicted gene, 30774 ncRNA 107306 Mm.432715 AU042950 - - - expressed sequence AU042950 protein-coding 112380 Igfbp3q2 - - - insulin-like growth factor binding protein 3 QTL 2 unknown 100416177 Gm17957 - - 2|2 C3 ribosomal protein S3 pseudogene pseudo 57880 AA517562 - - - EST AA517562 unknown 102638764 XR_378549 Gm35249 - - 7 F3|7 predicted gene, 35249 ncRNA 667037 Gm12165 - - 11|11 B1.1 predicted gene 12165 pseudo 105244036 Gm39721 - - 1|1 predicted gene, 39721 protein-coding 102637856 XR_378645 Gm34561 - - 7 F5|7 predicted gene, 34561 ncRNA 61118 D2Mit496 - - 2 78.4 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 496 unknown 627270 Mm.391441 XR_871929 Igf1os Gm10055|Gm16176 - 10 C1|10 insulin-like growth factor 1, opposite strand unknown 668087 Gm8969 EG668087 - 3|3 F1 predicted gene 8969 pseudo 668714 Gm9315 EG668714 - 12|12 A1.3 predicted gene 9315 pseudo 111668 Igh-VSM7 - - - immunoglobulin heavy chain, (SM7 family) other 102632329 Gm28689 - - Y|Y predicted gene 28689 protein-coding 100035501 Tailq7 - - - tail length QTL 7 unknown 226105 Mm.29119 NM_145499 ENSMUSG00000060613 Cyp2c70 - - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 70 protein-coding 359912 DXMgc76 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 76 unknown 258217 Olfr1498-ps1 MOR211-3P - 19|19 A olfactory receptor 1498, pseudogene 1 pseudo 102640092 XR_384216 ENSMUSG00000116079 Gm36245 - - 15 E1|15 predicted gene, 36245 ncRNA 673604 Gm9599 - - 12|12 F1 predicted gene 9599 pseudo 108169149 XR_001785274 Gm46962 - - 6 C1|6 predicted gene, 46962 ncRNA 100043434 NR_102329 Gm4432 - - 17 B1|17 predicted gene 4432 pseudo 68283 Mm.280669 NM_026739 ENSMUSG00000036411 9530077C05Rik 1110003N12Rik|mKIAA0895 - 9|9 A3 RIKEN cDNA 9530077C05 gene protein-coding 102635814 Gm33060 - - 4|4 predicted gene, 33060 ncRNA 93912 D16Jhu50 151B22.T7 - - DNA segment, Chr 16, Johns Hopkins University 50 unknown 74570 Mm.213114 NM_029869 ENSMUSG00000029729 Zkscan1 5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139 - 5|5 G2 zinc finger with KRAB and SCAN domains 1 protein-coding 75524 Mm.38543 NM_029324 ENSMUSG00000058935 Tex48 1700018C11Rik|bM230C2.3 - 4|4 C1 testis expressed 48 protein-coding 404497 Olfr1315-ps1 MOR245-1 - 2|2 E3 olfactory receptor 1315, pseudogene 1 pseudo 105245120 XR_871512 Gm40614 - - 10 A4|10 predicted gene, 40614 ncRNA 109280069 LOC109280069 Mm642 - - VISTA enhancer mm642 biological-region 110475 Tcra-V5.7 - - - T cell receptor alpha, variable 5.7 other 108516 Ms13-24 Ms13-Hf8 - - minisatellite 13-24 detected by M13 phage probe other 110183 Rn18s-rs5 672857|Gm42418|Gm9580|Rnr17 - 17 B1|17 18s RNA, related sequence 5 pseudo 242297 Mm.331470 NM_173426 ENSMUSG00000049119 Fam110b 1700012H17Rik|5031405P22|AW049855 - 4|4 A1 family with sequence similarity 110, member B protein-coding 394435 Mm.300095 NM_201410 ENSMUSG00000090145 Ugt1a6b A9'|Ugt1a9 - 1|1 D UDP glucuronosyltransferase 1 family, polypeptide A6B protein-coding 171242 Mm.377198 NM_134208 ENSMUSG00000061602 Vmn1r78 V1rg7 - 7|7 A1 vomeronasal 1 receptor 78 protein-coding 666967 Gm8388 EG666967 - 3|3 E1 chloride intracellular channel 4 (mitochondrial) pseudogene pseudo 105246866 XR_879821 Gm42074 - - 11 B1.2|11 predicted gene, 42074 ncRNA 15501 hsh - - - hind shaker unknown 102637921 LOC102637921 - - 7 B5 sorbitol dehydrogenase-like pseudo 21012 T(1C2;16C3)45Dn T(1;16)45Dn|T45Dn - - reciprocal translocation, Chr 1, cytogenetic band C2; and Chr 16, cytogenetic band C3, Davisson 45 other 102633033 XR_865897 Gm30956 - - 1 H6|1 predicted gene, 30956 ncRNA 100417315 Gm18526 - - 18|18 A1 crumbs homolog 1 pseudogene pseudo 667348 Gm8586 EG667348 - 14|14 C2 predicted gene 8586 pseudo 108168018 XR_001780655 Gm46367 - - 12 D1|12 predicted gene, 46367 ncRNA 258561 Mm.223090 NM_146568 ENSMUSG00000075210 Olfr1012 MOR213-6 - 2|2 D olfactory receptor 1012 protein-coding 102633831 XR_380248 ENSMUSG00000111008 Gm31562 - - 10 B1|10 predicted gene, 31562 ncRNA 111369 Mov15 Mov-15 - XY 76.0 cM Moloney leukemia virus 15 other 100416414 Gm18103 - - 9|9 B ribosomal protein S3A pseudogene pseudo 60823 D4Mit68 - - 4 69.44 cM DNA segment, Chr 4, Massachusetts Institute of Technology 68 unknown 360113 D17Jcs114 - - - DNA segment, Chr 17, John C. Schimenti 114 unknown 76720 Mm.54263 NR_131045 ENSMUSG00000114333 1700084D21Rik - - 13|13 D2.2 RIKEN cDNA 1700084D21 gene ncRNA 28035 Mm.281900 NM_138592 ENSMUSG00000056305 Usp39 AA408960|AI894154|CGI-21|D6Wsu157e|SAD1 - 6 C1|6 32.27 cM ubiquitin specific peptidase 39 protein-coding 100042900 Gm10540 - - 18|18 B3 predicted gene 10540 pseudo 98662 Mm.437383 AW061147 - - - expressed sequence AW061147 protein-coding 100885827 NR_049188 ENSMUSG00000093515 Mir1231 Gm23720|mir-1231|mmu-mir-1231 - 1|1 E4 microRNA 1231 ncRNA 12818 Mm.297859 NM_181277 ENSMUSG00000022371 Col14a1 5730412L22Rik|AW108078 - 15|15 D1 collagen, type XIV, alpha 1 protein-coding 100502846 XM_006509234 ENSMUSG00000109372 Gm19410 - - 8 A4|8 21.16 cM predicted gene, 19410 protein-coding 668439 Gm13738 - - 2|2 D predicted gene 13738 pseudo 61181 D18Mit92 - - 18 8.15 cM DNA segment, Chr 18, Massachusetts Institute of Technology 92 unknown 258742 Mm.271535 NM_146747 ENSMUSG00000058820 Olfr146 M15|MOR171-10 - 9|9 A5.1 olfactory receptor 146 protein-coding 105246334 XR_877027 Gm41635 - - 17 E4|17 predicted gene, 41635 ncRNA 100417326 Gm11498 - - 11|11 D crumbs homolog 1 pseudogene pseudo 14626 Mm.61206 NM_010294 ENSMUSG00000050553 Gk2 GKTA|Gk-rs2 - 5 E3|5 47.71 cM glycerol kinase 2 protein-coding 100043705 Gm9761 - - 3|3 G1 splicing factor, arginine/serine-rich pseudogene pseudo 666447 Gm8111 EG666447 - X|X A6 heat shock protein 1-like pseudogene pseudo 628372 Gm6872 EG628372 - 7|7 B3 CTD nuclear envelope phosphatase 1 pseudogene pseudo 403174 Mm.291225 NM_207277 ENSMUSG00000051246 Msantd1 A930005I04Rik|Gm144 - 5|5 B2 Myb/SANT-like DNA-binding domain containing 1 protein-coding 62255 D18Mit46 - - 18 52.67 cM DNA segment, Chr 18, Massachusetts Institute of Technology 46 unknown 105243286 XR_879190 Gm39249 - - 8 D3|8 predicted gene, 39249 ncRNA 102633769 XR_382668 Gm31516 - - 13 C1|13 predicted gene, 31516 ncRNA 102242 Mm.12065 AU024180 - - - expressed sequence AU024180 unknown 73883 Mm.489041 NR_153763 4930431P22Rik - - 14|14 D3 RIKEN cDNA 4930431P22 gene ncRNA 102638948 XR_377214 Gm35383 - - 5 G3|5 predicted gene, 35383 ncRNA 30839 Mm.29170 NM_013908 ENSMUSG00000015095 Fbxw5 AI159739|Fbw5 - 2|2 A3 F-box and WD-40 domain protein 5 protein-coding 258845 Mm.377718 NM_146848 ENSMUSG00000045150 Olfr1161 MOR174-2 - 2|2 D olfactory receptor 1161 protein-coding 102636981 Gm33903 - - 1|1 predicted gene, 33903 protein-coding 78795 Mm.379264 NM_027456 ENSMUSG00000062590 Armc9 3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik - 1|1 C5 armadillo repeat containing 9 protein-coding 102634620 Gm32159 - - 13|13 predicted gene, 32159 ncRNA 627737 Rpl22-ps1 EG627737|Gm6784 - X|X A1.1 ribosomal protein L22, pseudogene 1 pseudo 105247179 XR_881475 Gm42322 - - 4 D2.3|4 predicted gene, 42322 ncRNA 102631788 XR_390508 Gm30036 - - 4 A5|4 predicted gene, 30036 ncRNA 102637223 Gm34092 - - 14|14 predicted gene, 34092 protein-coding 252907 Mm.435548 NM_145845 ENSMUSG00000099787 Vmn1r192 V1ri1 - 13|13 A3.1 vomeronasal 1 receptor 192 protein-coding 100416340 Gm18052 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 100034798 Chol8 - - 4 19.64 cM cholesterol 8 unknown 112163582 Mm.358937 AA474644 - - - expressed sequence AA474644 protein-coding 116863 Prdt3 - - 11 51.23 cM prion disease incubation time 3 unknown 15375 Mm.4578 NM_008259 ENSMUSG00000035451 Foxa1 Hnf-3a|Hnf3a|Tcf-3a|Tcf3a - 12 C1|12 24.7 cM forkhead box A1 protein-coding 665525 Mm.480265 NM_001166735 ENSMUSG00000091151 Vmn1r224 EG665525|Gm7673 - 17|17 A3.2 vomeronasal 1 receptor 224 protein-coding 105247056 XR_880885 Gm42231 - - 5 A3|5 predicted gene, 42231 ncRNA 100040492 Gm2803 - - 15|15 B1 predicted gene 2803 pseudo 85213 D17Mit133 - - 17 12.53 cM DNA segment, Chr 17, Massachusetts Institute of Technology 133 unknown 102638729 XR_880905 Gm35223 - - 5 B1|5 predicted gene, 35223 ncRNA 628119 Anapc15-ps EG628119|Gm6843 - 10|10 C2 anaphase prompoting complex C subunit 15, pseudogene pseudo 62652 D9Mit1008 D14Mit169 - 9 42.12 cM DNA segment, Chr 9, Massachusetts Institute of Technology 1008 unknown 670533 Mm.459090 NM_001101613 ENSMUSG00000059845 Gm11567 - - 11 D|11 predicted gene 11567 protein-coding 56520 Mm.41787 NM_019731 ENSMUSG00000024177 Nme4 2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4 - 17|17 A3.3 NME/NM23 nucleoside diphosphate kinase 4 protein-coding 68260 Mm.278805 NM_026642 ENSMUSG00000037085 Trmt12 4632406N01Rik|AI449275|Tyw2 - 15|15 D1 tRNA methyltranferase 12 protein-coding 66928 Mm.24332 NM_025849 ENSMUSG00000028398 Dmac1 1700027K24Rik|3110001D03Rik|Tmem261 - 4|4 C3 distal membrane arm assembly complex 1 protein-coding 102635102 Gm32523 - - 4|4 predicted gene, 32523 ncRNA 106718 Mm.353430 AU022096 - - - expressed sequence AU022096 unknown 236294 Gm4900 EG236294 - 13|13 A1 polypyrimidine tract binding protein 1 pseudogene pseudo 259279 Mm.142095 NM_198031 ENSMUSG00000000759 Tubgcp3 GCP3|Spc98p - 8|8 A1.1 tubulin, gamma complex associated protein 3 protein-coding 110120501 LOC110120501 - - - VISTA enhancer mm1302 biological-region 100416440 Gm18112 - - 12|12 B3 PRAME family member 8 pseudogene pseudo 102637730 XR_382301 ENSMUSG00000113919 Gm34466 - - 13 A5|13 predicted gene, 34466 ncRNA 328489 Mm.447020 NR_045740 ENSMUSG00000097662 Gm2093 100039196|A630020A06 - 15|15 A1 predicted gene 2093 ncRNA 20199 Mm.19946 NM_011312 ENSMUSG00000001023 S100a5 S100D9 - 3 F1|3 39.27 cM S100 calcium binding protein A5 protein-coding 52994 B5T7 - - - DNA segment, B5T7 unknown 102634616 Gm32156 - - 1|1 predicted gene, 32156 ncRNA 108167743 XR_001779528 Gm46169 - - 1 H2.3|1 predicted gene, 46169 ncRNA 100043494 Gm4476 - - 14|14 E4 suppression of tumorigenicity 13 pseudogene pseudo 108168379 XR_001782444 Gm46623 - - 18 C|18 predicted gene, 46623 ncRNA 105247136 XR_881289 Gm42290 - - 4 B3|4 predicted gene, 42290 ncRNA 100417898 Gm18890 - - 15|15 F1 phosphoribosyl pyrophosphate synthetase 1 pseudogene pseudo 100039965 Gm2522 - - 6|6 A1 predicted gene 2522 pseudo 112288 Pas8 - - 1 68.38 cM pulmonary adenoma susceptibility 8 unknown 626922 NM_001085539 Gm13101 - - 4|4 E1 preferentially expressed antigen in melanoma like pseudogene pseudo 381455 Mm.397973 6430573P05Rik Gm1648 - 3|3 E3 RIKEN cDNA 6430573P05 gene protein-coding 170459 Mm.127058 NM_133774 ENSMUSG00000024378 Stard4 4632419C16Rik|9030213J02Rik - 18 B1|18 18.18 cM StAR-related lipid transfer (START) domain containing 4 protein-coding 62455 D13Mit313 - - 13 37.8 cM DNA Segment, Chr 13 Massachusetts Institute of Technology 313 unknown 105243879 XR_872279 Gm39604 - - 11 A3.1|11 predicted gene, 39604 ncRNA 102639498 Gm35799 - - 14|14 predicted gene, 35799 ncRNA 15413 Mm.207 NM_008268 ENSMUSG00000038700 Hoxb5 AI385717|Hox-2.1 - 11 D|11 59.82 cM homeobox B5 protein-coding 20690 Mm.4688 NM_009241 ENSMUSG00000029682 Spam1 AV039194|Ph-20 - 6 A3.1|6 11.28 cM sperm adhesion molecule 1 protein-coding 692154 Igkv1-88 Gm16904 - 6|6 C1 immunoglobulin kappa chain variable 1-88 other 241694 Mm.222310 NM_001033348 ENSMUSG00000037110 Ralgapa2 A230067G21Rik|AS250|BC053994|RGC2|pp250 - 2|2 G1 Ral GTPase activating protein, alpha subunit 2 (catalytic) protein-coding 100040303 Gm2700 - - 4|4 C4 RAN, member RAS oncogene family pseudogene pseudo 105242397 Gm38681 - - 15|15 predicted gene, 38681 ncRNA 102639730 XR_389517 Gm35973 - - 5 F|5 predicted gene, 35973 ncRNA 545547 NM_001281499 ENSMUSG00000068887 Lce1j Sprrl8 - 3|3 F1 late cornified envelope 1J protein-coding 67547 Mm.30239 NM_026228 ENSMUSG00000053897 Slc39a8 4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8 - 3 G3|3 63.04 cM solute carrier family 39 (metal ion transporter), member 8 protein-coding 62759 D17Mit184 - - 17 38.8 cM DNA segment, Chr 17, Massachusetts Institute of Technology 184 unknown 102640673 NM_001362181 LOC102640673 - - 17 A3.1 zinc finger protein 431-like protein-coding 105245571 XR_873707 Gm41011 - - 13 C3|13 predicted gene, 41011 ncRNA 105246123 XR_876119 Gm41463 - - 16 C1.2|16 predicted gene, 41463 ncRNA 18356 Mm.24769 NM_010999 ENSMUSG00000040328 Olfr56 IF7|MOR276-1 - 11|11 B1.2 olfactory receptor 56 protein-coding 100039835 Gm13214 - - 4|4 D2.3 predicted gene 13214 pseudo 105243194 XR_870451 LOC105243194 - - 8 B2 uncharacterized LOC105243194 ncRNA 100040022 Mm.485767 NM_001199331 ENSMUSG00000095172 Gm20822 - - Y|Y A1 predicted gene, 20822 protein-coding 359878 DXMgc25 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 25 unknown 667372 Gm8597 - - 17 A1|17 predicted gene 8597 pseudo 666207 XM_011245246 Gm7980 EG666207 - 14|14 B predicted gene 7980 protein-coding 381489 Mm.331086 NM_212452 ENSMUSG00000034009 Rxfp1 Gm1018|Lgr7 - 3|3 E3 relaxin/insulin-like family peptide receptor 1 protein-coding 69961 Mm.425182 NM_027278 ENSMUSG00000036114 Rpp25l 2810432D09Rik|AW987258|Rppl25 - 4 A5|4 ribonuclease P/MRP 25 subunit-like protein-coding 52141 D6Ertd588e - - 6 6.74 cM DNA segment, Chr 6, ERATO Doi 588, expressed unknown 102632763 XR_378599 Gm30751 - - 7 F4|7 predicted gene, 30751 ncRNA 382478 Gm11962 EG382478 - 11|11 A1 polymerase (RNA) II (DNA directed) polypeptide D pseudogene pseudo 108167819 XR_001779812 Gm46232 - - 10 B5.3|10 predicted gene, 46232 ncRNA 100042364 Mm.34916 Gm3805 - - 10 B2|10 predicted gene 3805 unknown 666314 Gm13228 - - 4|4 E1 predicted gene 13228 pseudo 108168347 Mm.23707 XR_001782213 5830433I10Rik - - 17|17 A2 RIKEN cDNA 5830433I10 gene ncRNA 16828 Mm.29324 NM_010699 ENSMUSG00000063229 Ldha Ldh1|Ldhm|l7R2 - 7 B3|7 30.6 cM lactate dehydrogenase A protein-coding 194227 Mm.371676 NM_001007077 ENSMUSG00000066031 Gm13023 BC084594|MGC:91194 - 4 E1|4 predicted gene 13023 protein-coding 102467238 n-TAcgc8 n-Ta27 - 2 C1.1|2 nuclear encoded tRNA alanine 8 (anticodon CGC) tRNA 12173 Mm.243802 NM_007562 ENSMUSG00000025105 Bnc1 AI047752|AW546376|Bnc - 7|7 D3 basonuclin 1 protein-coding 102632137 XR_381370 Gm30290 - - 12 A2|12 predicted gene, 30290 ncRNA 96993 C80198 - - - expressed sequence C80198 unknown 27729 D1Sta3 - - 1 79.56 cM DNA segment, Chr 1, Philip Stanier 3 unknown 102465553 NR_105882 ENSMUSG00000098592 Mir6917 Gm27633|mmu-mir-6917 - 10|10 D3 microRNA 6917 ncRNA 100418014 Gm18949 - - 15|15 B3.1 eukaryotic translation initiation factor 4A2 pseudogene pseudo 62175 D14Mit94 - - 14 53.55 cM DNA segment, Chr 14, Massachusetts Institute of Technology 94 unknown 105242937 XR_882070 Gm39009 - - 7 B3|7 predicted gene, 39009 ncRNA 105242892 XR_881918 Gm38976 - - 7 A3|7 predicted gene, 38976 ncRNA 12918 Mm.290689 NM_205769 ENSMUSG00000049796 Crh CRF|Gm1347 - 3 A2|3 5.75 cM corticotropin releasing hormone protein-coding 105245811 Gm41201 - - 14|14 predicted gene, 41201 ncRNA 327951 Mm.415669 NM_001045525 ENSMUSG00000044795 Cyb5d1 Gm740 - 11|11 B3 cytochrome b5 domain containing 1 protein-coding 100169 Mm.158361 NM_175306 ENSMUSG00000066043 Phactr4 3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120 - 4|4 D2.3 phosphatase and actin regulator 4 protein-coding 73979 Mm.59239 4930434J08Rik - - 11|11 RIKEN cDNA 4930434J08 gene protein-coding 100417233 Gm18472 - - 7|7 C crumbs homolog 1 pseudogene pseudo 102632055 XR_380228 Gm30228 - - 10 A4|10 predicted gene, 30228 ncRNA 52307 D9Ertd241e - - 9 54.49 cM DNA segment, Chr 9, ERATO Doi 241, expressed unknown 100035092 W3q15 - - - weight 3 weeks QTL 15 unknown 108168417 XR_001782682 Gm46656 - - 19 C3|19 predicted gene, 46656 ncRNA 666836 Gm8319 EG666836 - 7 E1|7 predicted gene 8319 pseudo 105246880 XR_880100 Gm42085 - - 11 C|11 predicted gene, 42085 ncRNA 76963 Mm.443438 2310076G05Rik - - 9|9 RIKEN cDNA 2310076G05 gene protein-coding 107819 Myhn4 Myhn-4 - - myosin heavy chain, nonmuscular, type D protein-coding 667731 Rps2-ps4 Gm12215 - 11|11 B1.3 ribosomal protein S2, pseudogene 4 pseudo 108462 Ms61 MMS61 - - minisatellites detected by probe MMS61 other 72666 2810047J09Rik - - 11|11 B3 RIKEN cDNA 2810047J09 gene protein-coding 100040693 Defa-ps17 Gm15307 - 8 A2|8 defensin, alpha, pseudogene 17 pseudo 67866 Mm.87599 NM_023395 ENSMUSG00000023336 Wfdc1 2310058A03Rik|ps20 - 8|8 E1 WAP four-disulfide core domain 1 protein-coding 100417382 Gm18581 - - 18|18 A1 predicted gene, 18581 pseudo 20257 Mm.29580 NM_025285 ENSMUSG00000027500 Stmn2 AI159727|SCG10|Scgn10|Stmb2 - 3 A1|3 2.15 cM stathmin-like 2 protein-coding 11671 Mm.398221 NM_007437 ENSMUSG00000010025 Aldh3a2 AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH - 11 B2|11 37.96 cM aldehyde dehydrogenase family 3, subfamily A2 protein-coding 107872 Idd15 - - 5 3.43 cM insulin dependent diabetes susceptibility 15 protein-coding 60927 D9Mit66 - - 9 18.97 cM DNA segment, Chr 9, Massachusetts Institute of Technology 66 unknown 102465196 NR_105795 ENSMUSG00000099095 Mir6376 Gm27778|mmu-mir-6376 - 6|6 D1 microRNA 6376 ncRNA 665851 Gm7822 EG665851 - 13|13 B3 high mobility group box 3 pseudogene pseudo 228432 Mm.483325 NM_001081556 ENSMUSG00000074968 Ano3 AI838058|B230324K02Rik|Tmem16c - 2 E3|2 anoctamin 3 protein-coding 216344 Mm.21936 NM_024454 ENSMUSG00000020132 Rab21 9630024B22 - 10|10 D2 RAB21, member RAS oncogene family protein-coding 53813 D17Tu53B D17Tu53 - - DNA segment, Chr 17, Tubingen 53B unknown 665866 Gm7834 EG665866 - X|X A5 predicted gene 7834 pseudo 27806 502H20R - - - DNA segment, 502H20R (Research Genetics) unknown 102633482 Gm31296 - - 4|4 predicted gene, 31296 ncRNA 102641557 XM_011244432 Gm38564 - - 13 B1|13 predicted gene, 38564 protein-coding 19496 Rb(16.17)74Lub Rb74Lub - - Robertsonian translocation, Chr 16 and 17, Lubeck 74 other 102634222 Gm17467 - - X|X 49.81 cM predicted gene, 17467 protein-coding 53064 EC19AR - - - DNA segment, EC19AR unknown 105243123 XR_870150 Gm39133 - - 8 A1.1|8 predicted gene, 39133 ncRNA 61657 D7Mit274 - - 7 41.5 cM DNA segment, Chr 7, Massachusetts Institute of Technology 274 unknown 69999 Mm.261413 NR_040681 ENSMUSG00000100911 1700027F09Rik - - 5|5 C3.1 RIKEN cDNA 1700027F09 gene ncRNA 102637364 XR_878357 Gm34194 - - 1 D|1 predicted gene, 34194 ncRNA 105244627 XR_867944 Gm40208 - - 4 C6|4 predicted gene, 40208 ncRNA 320395 C130075A20Rik AV320517 - 3|3 RIKEN cDNA C130075A20 gene protein-coding 102639074 XR_374159 Gm35476 - - 2 A3|2 predicted gene, 35476 ncRNA 27746 D2Dcr18 - - - DNA segment, Chr 2, Derry C. Roopenian 18 unknown 105245945 XR_875331 Gm41317 - - 15 B3.3|15 predicted gene, 41317 ncRNA 23814 B430B21T - - - DNA segment B430-B-21-T unknown 75071 Mm.159415 NM_001256259 ENSMUSG00000059663 4930524N10Rik - - X|X F3 RIKEN cDNA 4930524N10 gene protein-coding 100124336 Traj52 Gm16773 - 14|14 C2 T cell receptor alpha joining 52 other 100035393 Mskt8 - - - musculoskeletal traits 8 unknown 276770 Mm.18026 NM_181582 ENSMUSG00000078812 Eif5a AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1 - 11|11 B3 eukaryotic translation initiation factor 5A protein-coding 19013 Mm.212789 NM_011144 ENSMUSG00000022383 Ppara 4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar - 15 E2|15 40.42 cM peroxisome proliferator activated receptor alpha protein-coding 100316714 NR_035496 ENSMUSG00000088478 Mir1946b mmu-mir-1946b - 9 A3|9 7.84 cM microRNA 1946b ncRNA 73815 Mm.416916 NR_045941 ENSMUSG00000113630 4930404H11Rik - - 12|12 C3 RIKEN cDNA 4930404H11 gene ncRNA 105245873 Mm.438095 Gm15938 - - 15|15 1.99 cM predicted gene 15938 ncRNA 629359 Gm6967 EG629359 - 19 C3|19 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100040599 Mm.491087 NM_001177408 ENSMUSG00000074449 Gm15319 - - 8|8 A2 predicted gene 15319 protein-coding 66552 Mm.269928 NM_023220 ENSMUSG00000027366 Sppl2a 2010106G01Rik|C130089K23Rik - 2|2 F1 signal peptide peptidase like 2A protein-coding 100416766 Gm18238 - - 16|16 C1.3 epidermal growth factor pseudogene pseudo 100504738 Gm20381 - - 8|8 60.88 cM predicted gene, 20381 ncRNA 75972 5033423O07Rik - - 19|19 RIKEN cDNA 5033423O07 gene protein-coding 69380 Mm.272519 NM_027063 ENSMUSG00000041399 1700013G24Rik AI507018 - 4|4 D3 RIKEN cDNA 1700013G24 gene protein-coding 105243183 XR_870420 Gm39173 - - 8 B1.1|8 predicted gene, 39173 ncRNA 100113367 Lctlp2 - - 5 47.29 cM lymph node cytotoxic T lymphocyte percentage 2 unknown 667793 Gm8816 EG667793 - 6|6 F3 RNA binding motif protein 39 pseudogene pseudo 100036367 Advh2 - - - adenovirus induced hyperthyroidism 2 unknown 17705 ATP6 - - - ATP synthase F0 subunit 6 protein-coding 64660 Mm.7328 NM_026080 ENSMUSG00000020477 Mrps24 3110030K20Rik|AI414579|Rpms24 - 11|11 A1 mitochondrial ribosomal protein S24 protein-coding 108167956 Gm46314 - - 12 A1.3|12 predicted gene, 46314 pseudo 100041142 Gm20862 - - Y|Y predicted gene, 20862 protein-coding 77592 Mm.444871 NM_175264 4931406H21Rik - - 14|14 A3 RIKEN cDNA 4931406H21 gene ncRNA 107817 Mm.481684 NM_033398 ENSMUSG00000056962 Jmjd6 5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585 - 11 E2|11 81.49 cM jumonji domain containing 6 protein-coding 209183 Gm4756 EG209183 - 12|12 C3 predicted gene 4756 pseudo 12123 Mm.384468 NM_007545 ENSMUSG00000046607 Hrk AI838259|Bid3|DP5|harakiri - 5|5 F harakiri, BCL2 interacting protein (contains only BH3 domain) protein-coding 102640062 Mm.24769 XR_388612 Gm12188 - - 11 B1.2|11 29.1 cM predicted gene 12188 ncRNA 100038456 Plast1b Plast14b - - plasma plant sterol 1b unknown 70999 Mm.329605 NM_027643 ENSMUSG00000024764 Naa40 4931433E08Rik|AU023197|Nat11|NatD - 19|19 A N(alpha)-acetyltransferase 40, NatD catalytic subunit protein-coding 100417929 Gm18904 - - 10|10 D2 predicted gene, 18904 pseudo 60930 D9Mit78 - - 9 57.77 cM DNA segment, Chr 9, Massachusetts Institute of Technology 78 unknown 66368 Mm.251228 NM_025517 ENSMUSG00000000339 Rtca 2310009A18Rik|AI450277|RPC|Rtcd1 - 3|3 G1 RNA 3'-terminal phosphate cyclase protein-coding 667440 Gm8634 EG667440 - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 60789 D3Mit55 - - 3 12.19 cM DNA segment, Chr 3, Massachusetts Institute of Technology 55 unknown 19505 Rb(2.16)3Mpl Rb3Mpl - - Robertsonian translocation, Chr 2 and 16, Montpellier 3 other 27822 565I03F - - - DNA segment, 565I03F (Research Genetics) unknown 628135 Gm6847 EG628135 - 15|15 E2 SET translocation pseudogene pseudo 14006 Etohi8 - - - ethanol induced 8 unknown 62750 D17Mit203 - - 17 30.98 cM DNA segment, Chr 17, Massachusetts Institute of Technology 203 unknown 552890 Mm.490450 LOC552890 - - - uncharacterized LOC552890 unknown 111753 H2-Tlev H-2Tlev - - histocompatibility 2, T region endogenous virus other 108167873 XR_001780141 Gm46264 - - 11 E2|11 predicted gene, 46264 ncRNA 117082 Cpfd5 Cpfd-5q - 13 30.06 cM cerebellum pattern fissures, declival 5 unknown 171214 Bplpf1 - - 17 18.59 cM bleomycin pulmonary fibrosis 1 unknown 108167830 XM_017314191 Gm46240 - - 10 C3|10 predicted gene, 46240 protein-coding 66151 Mm.393955 NM_025385 ENSMUSG00000023048 Prr13 1110020C13Rik|2010324E22Rik - 15|15 F3 proline rich 13 protein-coding 110120374 LOC110120374 - - - VISTA enhancer mm337 biological-region 100416291 Gm15712 - - 16|16 B4 ribosomal protein L3 pseudogene pseudo 257687 GA_x5J8B7W3KVV-33993-34050 - - - olfactory receptor GA_x5J8B7W3KVV-33993-34050 protein-coding 61379 D4Mit226 - - 4 81.42 cM DNA segment, Chr 4, Massachusetts Institute of Technology 226 unknown 102639142 XR_385160 Gm35525 - - 17 A1|17 predicted gene, 35525 ncRNA 67515 Mm.254979 NM_026213 ENSMUSG00000022151 Ttc33 2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf - 15|15 A1 tetratricopeptide repeat domain 33 protein-coding 503495 Ear-ps10 - - 14 C1|14 eosinophil-associated, ribonuclease A family, pseudogene 10 pseudo 386612 Mm.328831 NM_001008425 ENSMUSG00000041319 Thoc6 F830014G06Rik|Wdr58 - 17|17 A3.3 THO complex 6 protein-coding 72825 Mm.38037 NM_028369 ENSMUSG00000032583 Mon1a 2810468K17Rik - 9|9 F1 MON1 homolog A, secretory traffciking associated protein-coding 111574 Xmv48 Xmv-48 - - xenotropic murine leukemia virus 48 other 100035117 Bwtq9 - - - body weight QTL 9 unknown 327768 Mm.417745 NR_040646 ENSMUSG00000111994 A330049N07Rik - - 10|10 B5.3 RIKEN cDNA A330049N07 gene ncRNA 100503567 Gm11694 - - 11|11 80.84 cM predicted gene 11694 protein-coding 100418167 Kat6b-ps2 Gm19049 - 7|7 A1 k(lysine) acetyltransferase 6B, pseudogene 2 pseudo 654788 Mm.293811 XR_001778783 4732440D04Rik - - 1|1 A1 RIKEN cDNA 4732440D04 gene unknown 83408 Mm.333050 NM_031247 ENSMUSG00000039264 Gimap3 2010110D23Rik|Gimap5|Ian4 - 6|6 B2.3 GTPase, IMAP family member 3 protein-coding 73711 Mm.307770 NM_028617 ENSMUSG00000031813 Mvb12a 1110012M11Rik|Fam125a - 8|8 B3.3 multivesicular body subunit 12A protein-coding 21169 T(3;19)25Ad T25Ad - - reciprocal translocation, Chr 3 and 19, Adler 25 other 108167894 XR_001780180 Gm46276 - - 11 A4|11 predicted gene, 46276 ncRNA 433313 Rpl17-ps1 Gm11589 - 1|1 C2 ribosomal protein L17, pseudogene 1 pseudo 71664 Mm.337232 NM_027853 ENSMUSG00000025347 Mettl7b 0610006F02Rik|AI266817 - 10|10 D3 methyltransferase like 7B protein-coding 108167497 XR_001778338 Gm46016 - - 7 B2|7 predicted gene, 46016 ncRNA 19366 Mm.3655 NM_009015 ENSMUSG00000028702 Rad54l RAD54 - 4|4 D1 RAD54 like (S. cerevisiae) protein-coding 231872 Mm.200499 NM_146165 ENSMUSG00000029610 Aimp2 AA407136|AA407225|Aimp2(p38)|Jtv1 - 5|5 G2 aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 protein-coding 74326 Mm.31051 NM_028871 ENSMUSG00000066037 Hnrnpr 2610003J05Rik|2610528B01Rik|Hnrpr - 4|4 D3 heterogeneous nuclear ribonucleoprotein R protein-coding 56305 Mm.200516 NM_019640 ENSMUSG00000050017 Pitpnb PI-TP-beta - 5|5 F phosphatidylinositol transfer protein, beta protein-coding 102640441 Gm36501 - - 13 B3|13 predicted gene, 36501 pseudo 434080 Gm5580 EG434080 - 6|6 E3 predicted pseudogene 5580 pseudo 108167991 XR_001780573 Gm46341 - - 12 A1.3|12 predicted gene, 46341 ncRNA 70471 2610304O13Rik - - 13|13 RIKEN cDNA 2610304O13 gene protein-coding 100035575 Brmth4 - - - behavioral response to methamphetamines 4 unknown 384125 Gm12642 - - 4|4 C5 SET translocation pseudogene pseudo 17116 Mm.440209 NM_010750 ENSMUSG00000056947 Mab21l1 AW047968 - 3|3 C mab-21-like 1 (C. elegans) protein-coding 102465783 NR_106149 ENSMUSG00000098443 Mir7681 Gm27806|mmu-mir-7681 - 1|1 C1.1 microRNA 7681 ncRNA 414093 Mm.156915 NR_015526 ENSMUSG00000112280 A830082N09Rik Gm17567 - 10 18.85 cM|10 B1 RIKEN cDNA A830082N09 gene ncRNA 100043209 Gm4294 - - 12 A1.1|12 ribosomal protein L15 pseudogene pseudo 100502720 Gm16144 - - 9|9 38.58 cM predicted gene 16144 ncRNA 77557 Mm.483307 9330182L19Rik - - 12|12 RIKEN cDNA 9330182L19 gene protein-coding 102632664 Mm.307846 XR_390992 9430083M05Rik - - 4|4 E2 RIKEN cDNA 9430083M05 gene ncRNA 64383 Mm.272443 NM_022432 ENSMUSG00000015149 Sirt2 5730427M03Rik|SIR2L2|Sir2l - 7|7 B1 sirtuin 2 protein-coding 117174 Mm.464234 4921509O09Rik - - - RIKEN cDNA 4921509O09 gene protein-coding 104010 Mm.151819 NM_174988 ENSMUSG00000053166 Cdh22 - - 2|2 H3 cadherin 22 protein-coding 195514 Gm12464 - - 3|3 F2.2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102634507 XR_384998 Gm32073 - - 16 C3.3|16 predicted gene, 32073 ncRNA 100503094 Mm.482411 Gm19551 - - 15|15 20.6 cM predicted gene, 19551 unknown 387187 NR_029720 ENSMUSG00000065523 Mir192 Mirn192|mir-192|mmu-mir-192 - 19|19 A microRNA 192 ncRNA 217390 Gm4803 EG217390|Hspd1-9p - 12|12 A1.1 heat shock protein 1 (chaperonin) pseudogene 9 pseudo 108167823 Gm46236 - - 10 C1|10 small nuclear ribonucleoprotein G pseudogene pseudo 102632173 Gm13775 - - 4|4 32.9 cM predicted gene 13775 ncRNA 329892 Mm.297737 XR_376430 Gm830 - - 4|4 C5 predicted gene 830 unknown 50996 Mm.29193 NM_016688 ENSMUSG00000041837 Pdcd7 C80112|ES18 - 9|9 C programmed cell death 7 protein-coding 102636772 XR_385675 Gm33751 - - 17 D|17 predicted gene, 33751 ncRNA 100503613 Mm.136719 NM_177012 5031434C07Rik - - 6|6 E3 RIKEN cDNA 5031434C07 gene ncRNA 105242412 XR_872498 Gm38686 - - 12 A1.1|12 predicted gene, 38686 ncRNA 60802 D3Mit99 - - - DNA segment, Chr 3, Massachusetts Institute of Technology 99 unknown 17968 Mm.433941 NM_010954 ENSMUSG00000022762 Ncam2 Ncam-2|Ocam|RNCAM - 16 C3.3|16 45.89 cM neural cell adhesion molecule 2 protein-coding 243548 Mm.248820 NM_001081146 ENSMUSG00000030020 Prickle2 6230400G14Rik|6720451F06Rik|mpk2 - 6|6 D1 prickle planar cell polarity protein 2 protein-coding 102636220 XR_383681 Gm33349 - - 14 E2.1|14 predicted gene, 33349 ncRNA 257863 Gm5035 EG257863|GA_x5J8B7TTH1T-1160-261 - 2 E1|2 olfactory receptor GA_x5J8B7TTH1T-1160-261 pseudo 62724 D18Mit145 - - 18 59.05 cM DNA segment, Chr 18, Massachusetts Institute of Technology 145 unknown 359972 DXMgc109 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 109 unknown 102632710 Gm30708 - - 5 B2|5 predicted gene, 30708 pseudo 12075 Mm.275937 NM_009751 ENSMUSG00000027420 Bfsp1 CP95 - 2|2 G1 beaded filament structural protein 1, in lens-CP94 protein-coding 67254 Mm.216217 NM_144518 ENSMUSG00000044117 2900011O08Rik MINP - 16|16 A1 RIKEN cDNA 2900011O08 gene protein-coding 246155 L1Md-Gf21 GF21 - X|X L1 repeat, Gf subfamily, member 21 other 102635821 XR_001784044 Gm33066 - - 3 H3|3 predicted gene, 33066 ncRNA 258676 Mm.377634 NM_146681 ENSMUSG00000067528 Olfr1424 MOR239-2 - 19|19 A olfactory receptor 1424 protein-coding 170643 Mm.89552 NM_130867 ENSMUSG00000041734 Kirrel 6720469N11Rik|Kirrel1|Neph1 - 3|3 F1 kirre like nephrin family adhesion molecule 1 protein-coding 68055 Mm.27844 NM_026536 ENSMUSG00000054894 Atp5s 1110015E18Rik|ATPW - 12|12 C2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S protein-coding 328845 Mm.179421 NM_001039114 ENSMUSG00000024207 Acsbg2 Bgr - 17|17 D acyl-CoA synthetase bubblegum family member 2 protein-coding 258746 Mm.377669 NM_146751 ENSMUSG00000042909 Olfr648 MOR31-12 - 7|7 E3 olfactory receptor 648 protein-coding 629957 Gm14303 - - 2|2 H3 ribosomal protein S29 pseudogene pseudo 67815 Mm.253922 NM_144520 ENSMUSG00000003585 Sec14l2 1300013M05Rik|Spf|TAP - 11|11 A1 SEC14-like lipid binding 2 protein-coding 111934 Iap5ra10 - - - intracisternal A-type particle, U5 region, SINE repeat a-10 other 433719 Mm.348294 NM_001013393 ENSMUSG00000066137 Gm11487 - - 4 C3|4 predicted gene 11487 protein-coding 171193 Mm.377173 NM_134175 ENSMUSG00000115701 Vmn1r6 V1rc20 - 6|6 B3 vomeronasal 1 receptor 6 protein-coding 102631970 Gm30166 - - 4|4 predicted gene, 30166 ncRNA 627470 Mm.233605 NM_001177377 ENSMUSG00000079579 Gm6760 EG627470 - X|X A7.1 predicted gene 6760 protein-coding 100135653 NM_001184964 Rhox3b-ps Gm14545|Rhox3.2|Rhox3a|Rhox3b - X|X A3.3 reproductive homeobox 3B, pseudogene pseudo 245596 Mm.246623 NM_001080549 ENSMUSG00000034551 Hdx D030011N01Rik|Gm380 - X|X E1 highly divergent homeobox protein-coding 66061 Mm.302693 NM_025329 ENSMUSG00000014075 Tctex1d2 0610012D17Rik|2410011K15Rik - 16|16 B3 Tctex1 domain containing 2 protein-coding 105246667 Mm.417668 XR_878411 Gm29601 - - 1 D|1 predicted gene 29601 ncRNA 18323 Mm.222835 NM_146870 ENSMUSG00000058270 Olfr25 MOR170-4|MTPCR18 - 9|9 A5.1 olfactory receptor 25 protein-coding 100035739 Lbm5 - - - lean body mass 5 unknown 105247168 Mm.389533 LOC105247168 - - - uncharacterized LOC105247168 protein-coding 100043956 Gm14561 - - X|X A2 protein phosphatase 1, catalytic subunit, gamma isoform pseudogene pseudo 545539 Mm.393389 NR_040403 ENSMUSG00000074466 Gm15417 - - 3 F1|3 predicted gene 15417 ncRNA 17992 Mm.415865 NM_010886 ENSMUSG00000029632 Ndufa4 MLRQ - 6|6 A1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 protein-coding 100034832 Tbrs4 Trl-4 - - tuberculosis resistance 4 unknown 269424 Mm.286285 NM_172303 ENSMUSG00000025764 Jade1 AU041499|D530048A03Rik|Phf17|mKIAA1807 - 3|3 B jade family PHD finger 1 protein-coding 102633157 XR_391000 Gm31055 - - 4 E2|4 predicted gene, 31055 ncRNA 258117 Mm.432096 NM_001011839 ENSMUSG00000096436 Olfr1437 MOR214-6 - 19|19 A olfactory receptor 1437 protein-coding 106512 Mm.26584 NM_134116 ENSMUSG00000034786 Gpsm3 AA960287|AGS4 - 17|17 B1 G-protein signalling modulator 3 (AGS3-like, C. elegans) protein-coding 105243924 Gm39641 - - 1|1 predicted gene, 39641 ncRNA 109280132 LOC109280132 Mm1122 - - VISTA enhancer mm1122 biological-region 102635810 Mm.412613 Gm33056 - - 10|10 predicted gene, 33056 ncRNA 102635173 XR_381228 Gm32576 - - 12 A1.1|12 predicted gene, 32576 ncRNA 21818 Mm.2961 NM_009374 ENSMUSG00000027401 Tgm3 AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we - 2|2 F1 transglutaminase 3, E polypeptide protein-coding 100039544 Gm16421 EG665171 - X|X E3 helicase-like transcription factor pseudogene pseudo 21188 T(4;8)Tp(8q8p)36H - - - reciprocal translocation, Chr 4 and 8, Harwell 36 other 104177 Lyb7 Lyb-7 - - B-lymphocyte antigen 7 protein-coding 104436 Tpe2 Mtp-3|Mtp3 - - tear protein electrophoretic 2 protein-coding 108169068 XR_001784954 Gm46922 - - 5 F|5 predicted gene, 46922 ncRNA 19058 Mm.41840 NM_024459 ENSMUSG00000033953 Ppp3r1 CaNB1|Cnb1|MCIP1 - 11|11 A2 protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I) protein-coding 668582 Ighv8-14 EG668582|Gm9254 - 12|12 F2 immunoglobulin heavy variable 8-14 other 102638633 Mm.404140 XR_389792 Gm26608 - - 5 B1|5 predicted gene, 26608 ncRNA 105245924 Mm.391911 NR_155441 ENSMUSG00000089804 Gm16136 - - 15|15 14.84 cM predicted gene 16136 ncRNA 69258 2610030P05Rik - - 2|2 RIKEN cDNA 2610030P05 gene protein-coding 76379 Mm.417855 1700001N15Rik - - 3|3 H1 RIKEN cDNA 1700001N15 gene unknown 102631672 Gm28165 - - Y|Y predicted gene 28165 pseudo 112147 Afw8 - - - abdominal fat weight QTL 8 unknown 100502916 XM_011240929 Gm26989 - - 5|5 G2 predicted gene, 26989 pseudo 100504031 Gm20022 - - 6|6 17.85 cM predicted gene, 20022 unknown 100036429 Pwatq1 - - - percent water in carcass QTL 1 unknown 100503386 Mm.180719 NM_001195529 ENSMUSG00000096606 Tpbgl EG245190|Gm4980 - 7|7 E1 trophoblast glycoprotein-like protein-coding 110962 Mm.372826 NM_033072 ENSMUSG00000025409 Mbd6 D10Wsu93e - 10 D3|10 74.5 cM methyl-CpG binding domain protein 6 protein-coding 107828 Tcra-V11.8 AV11S8|Va11.3' - - T cell receptor alpha, variable 11.8 other 102681 AU022707 - - - expressed sequence AU022707 unknown 107552 Tel12q - - - telomeric sequence, Chr 12, q arm protein-coding 108169203 XR_001785458 Gm46990 - - 6 C1|6 predicted gene, 46990 ncRNA 105244870 XR_001785371 Gm40401 - - 6 F3|6 predicted gene, 40401 ncRNA 100462729 Gm14175 - - 2 E5|2 59.97 cM ribosomal protein S27 pseudogene pseudo 109906 Rig1 Rig-1 - - regulation of Igh-1b 1 protein-coding 70673 Mm.257785 NM_027504 ENSMUSG00000039410 Prdm16 5730557K01Rik|csp1|mel1 - 4|4 E2 PR domain containing 16 protein-coding 102634259 LOC102634259 - - 13 A3.3 DNA polymerase epsilon subunit 3 pseudogene pseudo 100039828 Rps12-ps6 EG546371|Gm16389 - X|X E3 ribosomal protein S12, pseudogene 6 pseudo 102639802 XM_006522824 ENSMUSG00000108763 Gm36028 - - 16 B3|16 predicted gene, 36028 protein-coding 100416988 Gm18349 - - 7|7 B4 MAS-related GPR, member A4 pseudogene pseudo 108168729 Gm46726 - - 2 E1|2 collagen alpha-1(XXV) chain pseudogene pseudo 105244964 Gm40482 - - 8|8 predicted gene, 40482 ncRNA 22532 Xmv14 Xmv-14 - - xenotropic murine leukemia virus 14 other 105247027 XR_880773 Gm42209 - - 3 B|3 predicted gene, 42209 ncRNA 50784 Mm.28873 NM_015817 ENSMUSG00000052151 Plpp2 Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c - 10 C1|10 39.72 cM phospholipid phosphatase 2 protein-coding 62003 D8Mit336 - - 8 17.64 cM DNA segment, Chr 8, Massachusetts Institute of Technology 336 unknown 387233 NR_029813 ENSMUSG00000065597 Mir124a-1 Mirn124a|Mirn124a-1 - 14|14 D1 microRNA 124a-1 ncRNA 102639342 XR_388017 Gm35676 - - 8 D3|8 predicted gene, 35676 ncRNA 100534303 LOC100534303 - - 7|7 A1 vomeronasal 2, receptor 30 pseudogene pseudo 71733 Mm.247956 NM_027890 ENSMUSG00000006342 Susd2 1200011D11Rik - 10|10 C1 sushi domain containing 2 protein-coding 27818 349F04F - - - DNA segment, 349F04F (Research Genetics) unknown 667968 Gm8902 EG667968 - 7|7 A3 ubiquitin specific peptidase 12 pseudogene pseudo 61735 D4Mit287 - - 4 31.87 cM DNA segment, Chr 4, Massachusetts Institute of Technology 287 unknown 102633071 XR_375112 ENSMUSG00000087433 Gm14167 - - 2 G3|2 74.83 cM predicted gene 14167 ncRNA 56096 Mm.274842 NM_019538 ENSMUSG00000061082 Plac1 DXWsu72e|Epcs26|Oosp2l - X A5|X 29.31 cM placental specific protein 1 protein-coding 105242594 Gm38763 - - 6|6 predicted gene, 38763 ncRNA 102639437 XM_006526422 Gm35751 - - 18 D3|18 predicted gene, 35751 protein-coding 14646 Glns-ps1 - - 11 A3.1|11 12.26 cM glutamine synthetase pseudogene 1 pseudo 102467444 n-TAagc19 n-Ta19 - 13 A3.1|13 nuclear encoded tRNA alanine 19 (anticodon AGC) tRNA 105245848 XR_874925 Gm41237 - - 14 E2.3|14 predicted gene, 41237 ncRNA 60740 D10Mit1001 D1Mit59 - 10 22.67 cM DNA segment, Chr 10, Massachusetts Institute of Technology 1001 unknown 100040739 Defa-ps11 - - 8|8 A2 defensin, alpha, pseudogene 11 pseudo 244061 Mm.484605 NR_033604 ENSMUSG00000108337 Gm4971 EG244061 - 7|7 D1 Smad nuclear interacting protein 1 pseudogene pseudo 76036 5830431N17Rik - - 18|18 RIKEN cDNA 5830431N17 gene protein-coding 234624 Mm.124595 NM_175479 ENSMUSG00000052479 A330008L17Rik - - 8|8 D1 RIKEN cDNA A330008L17 gene ncRNA 69536 Mm.259467 NM_133984 ENSMUSG00000032579 Hemk1 2310008M14Rik|AW049265 - 9|9 F1 HemK methyltransferase family member 1 protein-coding 105242803 XR_880071 Gm38913 - - 11 C|11 predicted gene, 38913 ncRNA 667186 Vmn1r-ps75 EG667186|Gm8500 - 7|7 A3 vomeronasal 1 receptor, pseudogene 75 pseudo 193533 Gm4742 EG193533 - 14|14 C2 proteasome alpha subunit C8 pseudogene pseudo 102636716 XR_882403 Gm33712 - - 4|4 predicted gene, 33712 ncRNA 102631974 XR_374977 Gm30169 - - 2 F1|2 predicted gene, 30169 ncRNA 102642435 Mm.281018 XR_869056 D030074P21Rik - - 6|6 B2.3 RIKEN cDNA D030074P21 gene ncRNA 102638859 XR_381020 Gm35321 - - 11 A1|11 predicted gene, 35321 ncRNA 19223 Mm.2339 NM_008968 ENSMUSG00000017969 Ptgis Cyp8|Cyp8a1|Pgis - 2|2 H3 prostaglandin I2 (prostacyclin) synthase protein-coding 16803 Mm.218846 NM_008489 ENSMUSG00000016024 Lbp Bpifd2|Ly88 - 2 H1|2 78.72 cM lipopolysaccharide binding protein protein-coding 54343 Mm.173271 NM_019426 ENSMUSG00000030213 Atf7ip 2610204M12Rik|AM|Mcaf1 - 6|6 G1 activating transcription factor 7 interacting protein protein-coding 230806 Mm.240080 NM_001162970 ENSMUSG00000012123 Crybg2 Aim1l - 4|4 D3 crystallin beta-gamma domain containing 2 protein-coding 16292 In(5)33Rk-d In(5)33Rk|In33Rk - - inversion, Chr 5, Roderick 33, distal other 100312557 Vmn1r-ps129 - - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 129 pseudo 100502756 Gm19353 - - 9 D|9 40.08 cM ribosomal protein L27A pseudogene pseudo 105244600 XR_001783965 Gm40190 - - 3 G1|3 predicted gene, 40190 ncRNA 380836 Mm.387097 NM_001013389 ENSMUSG00000021339 Mrs2 Gm902|HPT|Mrs2l|RPT - 13|13 A3.1 MRS2 magnesium transporter protein-coding 631266 Gm7059 - - 17 B1|17 predicted gene 7059 pseudo 211001 Mm.261581 NR_045738 ENSMUSG00000052295 8030423F21Rik - - 5|5 C1 RIKEN cDNA 8030423F21 gene ncRNA 635719 Gm7164 EG635719 - X|X A2 predicted gene 7164 pseudo 619941 Gm13770 - - 2|2 E1 predicted gene 13770 pseudo 66208 Mm.46444 NM_025424 ENSMUSG00000037499 Nenf 1110060M21Rik|SCIRP10|Spuf - 1|1 H6 neuron derived neurotrophic factor protein-coding 100503374 Gm17435 - - 8|8 35.08 cM predicted gene, 17435 ncRNA 102633046 XR_381763 Gm30966 - - 12 D1|12 predicted gene, 30966 ncRNA 100039441 Mm.396155 XM_017316231 ENSMUSG00000093979 Gm2237 - - 14 A3|14 predicted gene 2237 protein-coding 108169111 Gm43217 - - 5 E1|5 60S ribosomal protein L31 pseudogene pseudo 14247 Mm.258908 NM_008026 ENSMUSG00000016087 Fli1 EWSR2|Fli-1|SIC-1|Sic1 - 9 A4|9 17.74 cM Friend leukemia integration 1 protein-coding 60844 D5Mit58 - - 5 38.44 cM DNA segment, Chr 5, Massachusetts Institute of Technology 58 unknown 102633827 Gm31558 - - 2|2 predicted gene, 31558 protein-coding 62581 D12Mit171 - - 12 11.86 cM DNA segment, Chr 12, Massachusetts Institute of Technology 171 unknown 21938 Mm.235328 NM_011610 ENSMUSG00000028599 Tnfrsf1b CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75 - 4 E1|4 78.17 cM tumor necrosis factor receptor superfamily, member 1b protein-coding 15379 Mm.303355 NM_008262 ENSMUSG00000043013 Onecut1 D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1 - 9 D|9 41.93 cM one cut domain, family member 1 protein-coding 223527 Mm.291828 NM_175009 ENSMUSG00000022338 Eny2 1810057B09Rik|6720481I12|DC6|Ey2 - 15|15 B3.2 ENY2 transcription and export complex 2 subunit protein-coding 102633669 XR_877535 Gm31439 - - 18 E2|18 predicted gene, 31439 ncRNA 19862 NR_003027 ENSMUSG00000095132 Rnu6 - - 17 A1|17 8.88 cM U6 small nuclear RNA snRNA 105245193 Mm.72938 NR_155444 4930563J15Rik - - 10|10 B5.1 RIKEN cDNA 4930563J15 gene ncRNA 347723 Klra25 Ly49l/r - - killer cell lectin-like receptor, subfamily A, member 25 protein-coding 100418461 Gm19226 - - X|X F1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 pseudogene pseudo 21906 Mm.204765 NM_172709 ENSMUSG00000051596 Otop1 A530025J20Rik|Otp1|tlt - 5 B3|5 20.35 cM otopetrin 1 protein-coding 320279 Mm.82556 C630007K24Rik - - 18|18 RIKEN cDNA C630007K24 gene protein-coding 257906 Mm.377295 NM_001011752 ENSMUSG00000063394 Olfr293 MOR221-3 - 7|7 D3 olfactory receptor 293 protein-coding 102636834 Gm33794 - - 15|15 predicted gene, 33794 ncRNA 107785 Alm - - - anterior lenticonus with microphthalmia unknown 100416224 Gm17980 - - 10|10 C1 WD repeat domain 75 pseudogene pseudo 93898 Mm.258280 NM_138647 ENSMUSG00000087408 Cers1 Lass1|Uog-1|to - 8|8 B3.3 ceramide synthase 1 protein-coding 70088 Mm.291214 NM_027310 ENSMUSG00000028863 Meaf6 2310005N01Rik|2810036M01Rik - 4|4 D2.2 MYST/Esa1-associated factor 6 protein-coding 102639173 Mm.473828 XR_869846 LOC102639173 - - 7 E2 uncharacterized LOC102639173 ncRNA 628449 Rpl21-ps2 EG628449|Gm6879 - 12|12 A1.1 ribosomal protein L21, pseudogene 2 pseudo 26373 Mm.270587 NM_011930 ENSMUSG00000036636 Clcn7 ClC-7|D17Wsu51e - 17 A3.3|17 12.53 cM chloride channel, voltage-sensitive 7 protein-coding 666388 Gm8077 EG666388 - 8|8 C1 5'-nucleotidase, cytosolic II pseudogene pseudo 634594 LOC634594 - - - Ig heavy chain V region 108A precursor-like other 112176 Afpq3 - - - abdominal fat percent QTL 3 unknown 13287 Del(14)5H Del5H - - deletion, Chr 14, Harwell 5 other 100035686 Mohg6 - - - modifier of hg 6 unknown 100043292 Mm.339215 NM_001177535 ENSMUSG00000090854 Gm4340 - - 10 D1|10 predicted gene 4340 protein-coding 111258 Snrp1a-rs2 - - - U1 small nuclear ribonucleoprotein 1A, related sequence 2 pseudo 100039794 XM_017313118 Gm2427 - - 1 C5|1 predicted gene 2427 protein-coding 103958 Rn7s4 Rn7s-4a|Rn7s4a - - 7S RNA 4 scRNA 623337 Vmn2r-ps34 EG623337 - 6|6 F2 vomeronasal 2, receptor, pseudogene 34 pseudo 62441 D12Mit264 - - 12 2.49 cM DNA segment, Chr 12, Massachusetts Institute of Technology 264 unknown 22587 Xmv9 Xmv-9 - - xenotropic murine leukemia virus 9 other 102238527 Gm29819 - - 17 A3.3|17 polymerase (RNA) II (DNA directed) polypeptide K pseudogene pseudo 108863622 LOC108863622 - - - Star 5' regulatory region biological-region 100036198 Ssial4 - - - susceptibility to sialadenitis 4 unknown 668377 Gm9137 EG668377 - 7 B1 predicted gene 9137 pseudo 85172 D12Mit86 - - 12 22.11 cM DNA segment, Chr 12, Massachusetts Institute of Technology 86 unknown 100503580 Mm.404646 NR_045071 ENSMUSG00000116483 Gm19782 - - 15 D3|15 32.17 cM predicted gene, 19782 ncRNA 13478 Mm.18353 NM_007875 ENSMUSG00000032123 Dpagt1 AU021132|Dpagt2|GPT|Gnpta - 9 A5.2|9 24.84 cM dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) protein-coding 276713 333P17.R - - - DNA segment, 333P17.R unknown 100504323 Mm.484176 NM_001204913 Gm20172 - - 1 A5|1 10.48 cM predicted gene, 20172 protein-coding 100035549 Ofca2 - - - open field activity and conditioned avoidance 2 unknown 223690 Mm.24262 NM_144849 ENSMUSG00000033055 Ankrd54 C730048E16Rik|EST1068184|EST475269|Liar - 15 E1|15 37.7 cM ankyrin repeat domain 54 protein-coding 246102 Mm.772 NM_175542 ENSMUSG00000023066 Rttn 4921538A15Rik|AI666264|C530033I08Rik|D230040K24 - 18|18 E4 rotatin protein-coding 102638319 XR_378889 Gm34911 - - 8 A4|8 predicted gene, 34911 ncRNA 56468 Mm.126885 NM_019654 ENSMUSG00000037104 Socs5 1810018L08Rik|Cish5|mKIAA0671 - 17|17 E4 suppressor of cytokine signaling 5 protein-coding 546165 Gm10608 EG546165 - 9|9 F3 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene pseudo 21258 T(7;15)9H T9H - - reciprocal translocation, Chr 7 and 15, Harwell 9 other 69374 1700023A20Rik - - 9|9 RIKEN cDNA 1700023A20 gene protein-coding 14180 Mm.8846 NM_013518 ENSMUSG00000021974 Fgf9 Eks - 14 C3|14 30.51 cM fibroblast growth factor 9 protein-coding 102636124 XR_001783239 LOC102636124 - - 2 A3 uncharacterized LOC102636124 ncRNA 102467623 n-TVcac7 n-Tv15 - 11 B1.2|11 nuclear encoded tRNA valine 7 (anticodon CAC) tRNA 330502 Mm.295906 NM_177889 ENSMUSG00000098022 Zfp82 A030010D05|Krab16|Mszf3|Zfp-82 - 7|7 B1 zinc finger protein 82 protein-coding 102467489 n-TCgca6 n-Tc6 - 6 B2.3|6 nuclear encoded tRNA cysteine 6 (anticodon GCA) tRNA 75028 Mm.417820 NR_045734 ENSMUSG00000089914 4930486I03Rik - - 1|1 A4 RIKEN cDNA 4930486I03 gene ncRNA 106074 Mm.404507 AW557046 - - - expressed sequence AW557046 unknown 64291 Mm.259470 NM_020573 ENSMUSG00000044252 Osbpl1a G430090F17Rik|Gm753|ORP-1|Osbpl1b - 18|18 A1 oxysterol binding protein-like 1A protein-coding 108168659 XM_017318870 LOC108168659 - - Y D Y-linked testis-specific protein 1-like protein-coding 627608 Gm6773 EG627608 - 14|14 A2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 110301 Arp - - - Arp lymphoid/erythroid hyperplasia unknown 16548 Mm.22451 NM_008439 ENSMUSG00000029162 Khk - - 5 B1|5 16.9 cM ketohexokinase protein-coding 18003 Mm.288980 NM_017464 ENSMUSG00000021365 Nedd9 Cas-L|CasL|HEF1|MEF1|Nedd-9|p105 - 13|13 A3.3-A4 neural precursor cell expressed, developmentally down-regulated gene 9 protein-coding 102639614 Gm35883 - - 17|17 predicted gene, 35883 ncRNA 232853 Mm.23838 NM_172738 ENSMUSG00000062116 Zfp954 5730403M16Rik|8030437F07|AA123315 - 7|7 A1 zinc finger protein 954 protein-coding 100040314 Gm2707 - - 7 B4|7 MAS-related GPR, member A4 pseudogene pseudo 71146 Mm.329851 NM_027694 ENSMUSG00000042532 Golga7b 4933417O08Rik|AI839934 - 19|19 C3 golgi autoantigen, golgin subfamily a, 7B protein-coding 230735 Mm.171490 NM_177671 ENSMUSG00000028876 Epha10 A330090H18 - 4|4 D2.2 Eph receptor A10 protein-coding 68632 Mm.338242 NM_026793 ENSMUSG00000046916 Myct1 1110020B04Rik|AI225941|AI642973|Mtmc1 - 10|10 A1 myc target 1 protein-coding 100041574 Mm.393767 NM_001123370 ENSMUSG00000036552 9030025P20Rik D17Zt9e - 17 A2|17 8.95 cM RIKEN cDNA 9030025P20 gene protein-coding 102631917 XR_392605 ENSMUSG00000100533 Gm29504 - - Y E|Y predicted gene 29504 ncRNA 67844 Mm.31486 NM_026405 ENSMUSG00000019832 Rab32 2810011A17Rik|AU022057 - 10|10 A1 RAB32, member RAS oncogene family protein-coding 66578 Mm.180363 NM_025642 ENSMUSG00000022978 Mis18a 2610039C10Rik|2810018N07Rik - 16|16 C3.3 MIS18 kinetochore protein A protein-coding 213993 Mm.469677 NM_170757 ENSMUSG00000035173 Ccdc186 1810028B20Rik|A630007B06Rik|AI159700|Otg1 - 19|19 D2 coiled-coil domain containing 186 protein-coding 110777 Spe1-s - - - salivary protein electrophoretic 1, structural protein-coding 68991 Mm.294770 NM_026899 ENSMUSG00000029038 Ssu72 1190002E22Rik|1500011L16Rik|2610101M12Rik - 4|4 E2 Ssu72 RNA polymerase II CTD phosphatase homolog (yeast) protein-coding 105244667 XR_868043 Gm40233 - - 4 D2.1|4 predicted gene, 40233 ncRNA 320212 Mm.405575 C230099D08Rik - - 10|10 C1 RIKEN cDNA C230099D08 gene protein-coding 28084 Mm.301020 NM_026776 ENSMUSG00000078656 Vps25 1110020N13Rik|AW107467|D11Wsu68e - 11 D|11 64.48 cM vacuolar protein sorting 25 protein-coding 22373 Mm.268094 NM_011709 ENSMUSG00000000381 Wap - - 11 A1|11 4.61 cM whey acidic protein protein-coding 12825 Mm.249555 NM_009930 ENSMUSG00000026043 Col3a1 AW550625|Col3a-1|Tsk-2|Tsk2 - 1 C1.1|1 23.67 cM collagen, type III, alpha 1 protein-coding 100504692 Mm.394454 NR_040450 ENSMUSG00000104096 Gm20356 - - 3 E3|3 33.61 cM predicted gene, 20356 ncRNA 100042796 Gm4036 - - 12|12 A1.3 predicted gene 4036 pseudo 66774 Mm.87075 NR_131254 ENSMUSG00000097638 Carlr 4933439G12Rik|Carl - 2|2 A3 cardiac and apoptosis-related long non-coding RNA ncRNA 105242780 XR_869464 Gm38903 - - 6 F3|6 predicted gene, 38903 ncRNA 27848 D0Nds8 - - - DNA segment, Nuffield Department of Surgery 8 unknown 100040732 Mm.465135 NM_001145038 ENSMUSG00000078324 Btbd35f14 Gm2933 - X A3.2|X BTB domain containing 35, family member 14 protein-coding 85037 D9Mit1 - - 9 4.85 cM DNA segment, Chr 9, Massachusetts Institute of Technology 1 unknown 69964 Mm.160066 NR_015493 ENSMUSG00000086629 2810403D21Rik 1810022M18Rik|4632410B05Rik|AU017716 - X|X D RIKEN cDNA 2810403D21 gene ncRNA 20281 Scp2-ps1 - - 3|3 H4 sterol carrier protein 2, pseudogene 1 pseudo 668260 Gm9071 EG668260 - 12|12 A1.1 predicted gene 9071 pseudo 368204 Mm.26006 NM_183322 ENSMUSG00000067750 Khdc1a AU014713|C88118|Ndg1 - 1|1 A4 KH domain containing 1A protein-coding 108168631 XM_017318840 LOC108168631 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 69171 Mm.28193 NM_026977 ENSMUSG00000033159 Cnppd1 1810031K17Rik|AU043960 - 1|1 C4 cyclin Pas1/PHO80 domain containing 1 protein-coding 22363 Mm.377118 NM_016983 ENSMUSG00000059280 Vpreb2 CD179b|VpreB1|Vpreb-2 - 16 A3|16 11.14 cM pre-B lymphocyte gene 2 protein-coding 52846 Mm.259421 NM_028043 ENSMUSG00000003135 Cnot11 2410015L18Rik|C40|D1Bwg0212e - 1 B|1 18.31 cM CCR4-NOT transcription complex, subunit 11 protein-coding 116610 D7Tem12 - - - DNA segment, Chr 7, Tempel 12 unknown 231045 Mm.255800 NM_177676 ENSMUSG00000038199 4931409K22Rik Iqca1l|Iqca1p1 - 5|5 A3 RIKEN cDNA 4931409K22 gene protein-coding 105242728 XR_869316 Gm38868 - - 6 D3|6 predicted gene, 38868 ncRNA 100418367 Gm13223 - - 4|4 E1 carnitine deficiency-associated gene expressed in ventricle 3 pseudogene pseudo 54526 Mm.261601 NM_018803 ENSMUSG00000063260 Syt10 - - 15|15 E3 synaptotagmin X protein-coding 20655 Mm.276325 NM_011434 ENSMUSG00000022982 Sod1 B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1 - 16 C3.3|16 51.56 cM superoxide dismutase 1, soluble protein-coding 100504177 Mm.484137 XR_140498 F730016J06Rik - - 2|2 A3 RIKEN cDNA F730016J06 gene ncRNA 69908 Mm.41580 NM_023537 ENSMUSG00000003411 Rab3b 2610528C18Rik - 4|4 C7 RAB3B, member RAS oncogene family protein-coding 433458 Gm13880 - - 2|2 E2 predicted gene 13880 pseudo 69101 Mm.101656 NM_026940 ENSMUSG00000041774 Ydjc 1810015A11Rik|4930521M19Rik - 16|16 A3 YdjC homolog (bacterial) protein-coding 102636155 XR_871048 Gm33302 - - 9 E3.3|9 predicted gene, 33302 ncRNA 52746 D4Wsu35e - - - DNA segment, Chr 4, Wayne State University 35, expressed unknown 102636216 Gm29257 - - 1 E4|1 predicted gene 29257 pseudo 16792 Mm.271868 NM_010686 ENSMUSG00000028581 Laptm5 E3|Stra13 - 4|4 D2.2 lysosomal-associated protein transmembrane 5 protein-coding 70156 2310046G18Rik - - 4|4 RIKEN cDNA 2310046G18 gene protein-coding 240672 Mm.482424 NM_001085390 ENSMUSG00000034765 Dusp5 Gm337 - 19|19 D2 dual specificity phosphatase 5 protein-coding 105244536 Gm40129 - - 3|3 predicted gene, 40129 ncRNA 102637890 XR_382933 Gm34586 - - 13 D2.2|13 predicted gene, 34586 ncRNA 24004 Mm.328503 NM_198409 ENSMUSG00000043518 Rai2 3f8 - X|X F4 retinoic acid induced 2 protein-coding 100417110 Gm18402 - - 6|6 C1 mediator complex subunit 29 pseudogene pseudo 102636044 Gm33226 - - 9|9 predicted gene, 33226 ncRNA 66548 Mm.71891 NM_025629 ENSMUSG00000043822 Adamtsl5 2010109H09Rik|Thsd6 - 10|10 C1 ADAMTS-like 5 protein-coding 224763 Gm4831 EG224763|bM573K1.5 - 17|17 B1 predicted gene 4831 protein-coding 546990 Gm6007 EG546990 - 7|7 E3 Kruppel-like factor 5 pseudogene pseudo 319282 Mm.438016 A330095P18Rik - - 5|5 RIKEN cDNA A330095P18 gene protein-coding 100861473 NR_046120 ENSMUSG00000096307 n-R5s104 Rn5s4 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 104 rRNA 102638588 XR_880005 Gm35117 - - 11 B5|11 predicted gene, 35117 ncRNA 237775 Mm.339604 NM_178417 ENSMUSG00000054519 Zfp867 - - 11|11 B1.3 zinc finger protein 867 protein-coding 100502580 LOC100502580 - - X A7.3 40S ribosomal protein S27-like pseudo 258348 Mm.223040 NM_146351 ENSMUSG00000075155 Olfr1133 MOR176-2 - 2|2 D olfactory receptor 1133 protein-coding 100526527 NR_037288 ENSMUSG00000093108 Mir344f mir-344f|mmu-mir-344f - 7 C|7 34.32 cM microRNA Mir344f ncRNA 100126092 Mtbcq6 - - - multiple trait body composition QTL 6 unknown 100043577 Gm4529 - - 14 E5|14 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100034870 Nhdlq4 - - 10 70.36 cM non-HDL QTL 4 unknown 100416091 Gm16202 - - 9|9 E3.1 sorting nexin 4 pseudogene pseudo 107864 Jevr - - - resistance to Japanese encephalitis virus protein-coding 433594 Gm5537 EG433594 - 3 D|3 predicted gene 5537 pseudo 105244977 Gm40495 - - 12|12 predicted gene, 40495 ncRNA 21923 Mm.980 NM_011607 ENSMUSG00000028364 Tnc AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C - 4 C1|4 34.06 cM tenascin C protein-coding 110217 Tsil - - - thymus specific insertion locus protein-coding 73357 Mm.396219 1700048J15Rik - - 19|19 RIKEN cDNA 1700048J15 gene protein-coding 102639912 LOC102639912 - - 15 D3 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 631101 Mm.250525 NM_001254760 ENSMUSG00000095870 Lce1k Gm7055|Sprrl6 - 3 F1|3 late cornified envelope 1K protein-coding 102634516 XR_390846 Gm32079 - - 4 D3|4 predicted gene, 32079 ncRNA 102637360 Gm34191 - - Y|Y predicted gene, 34191 pseudo 100126451 Trav6n-5 Gm10894 - 14|14 C2 T cell receptor alpha variable 6N-5 other 258470 Mm.377519 NM_182714 ENSMUSG00000095377 Olfr91 MOR256-20|bM573K1.3 - 17|17 B1 olfactory receptor 91 protein-coding 245545 Pabpc1l2a-ps EG245545|Pabpc1l2a|Rbm32a - X|X D poly(A) binding protein, cytoplasmic 1-like 2A, pseudogene pseudo 21323 T(X;7)3Rl T3Rl - - reciprocal translocation, Chr X and 7, Russell 3 other 100043231 Mm.475613 NM_001166638 ENSMUSG00000112931 Gm4303 - - 10 D1|10 predicted gene 4303 protein-coding 111734 Igk-V22 - - - immunoglobulin kappa chain variable 22 (V22) other 102636949 LOC102636949 - - 6 F3 uncharacterized LOC102636949 pseudo 100418418 Gm19199 - - 15|15 D3 FCF1 small subunit processome component homolog pseudogene pseudo 102467512 n-TQctg6 n-Tq6 - 11 B3|11 nuclear encoded tRNA glutamine 6 (anticodon CTG) tRNA 100418078 Gm18986 - - 10|10 B1 ClpB caseinolytic peptidase B homolog pseudogene pseudo 328035 Mm.21995 NM_178035 ENSMUSG00000044788 Fads6 BC044804 - 11|11 E2 fatty acid desaturase domain family, member 6 protein-coding 102636584 XR_377555 Gm38489 - - 6 B1|6 predicted gene, 38489 ncRNA 24117 Mm.32831 NM_011915 ENSMUSG00000020218 Wif1 AW107799|WIF-1 - 10|10 D2 Wnt inhibitory factor 1 protein-coding 15904 Mm.458006 NM_031166 ENSMUSG00000021379 Id4 Idb4|bHLHb27 - 13 A5|13 24.71 cM inhibitor of DNA binding 4 protein-coding 100034856 Cdav - - - conditioned avoidance unknown 83962 Mm.439893 NM_146193 ENSMUSG00000025103 Btbd1 1190005H08Rik - 7|7 D3 BTB (POZ) domain containing 1 protein-coding 110803 Stop1-d - - - t-specific sperm-oolemma penetration 1, distal protein-coding 668963 Mm.457966 NM_001085553 ENSMUSG00000094596 Btbd35f20 Gm10921 - X|X A1.1 BTB domain containing 35, family member 20 protein-coding 66930 Mm.87448 NM_025850 ENSMUSG00000053111 Fank1 1700007B22Rik|AI850911 - 7|7 F3 fibronectin type 3 and ankyrin repeat domains 1 protein-coding 102639036 XR_383322 Gm35449 - - 14 B|14 predicted gene, 35449 ncRNA 18352 Mm.222842 NM_146583 ENSMUSG00000075199 Olfr52 IE6|MOR185-6|ORL446 - 2|2 D olfactory receptor 52 protein-coding 108167971 XR_001780526 ENSMUSG00000112053 Gm46328 - - 12 C1|12 predicted gene, 46328 ncRNA 16310 In(9)26Rk-p In(9)26Rk|In26Rk - - inversion, Chr 9, Roderick 26, proximal other 102635380 XR_373554 Gm32737 - - 1 C4|1 predicted gene, 32737 ncRNA 22156 Mm.10214 NM_011656 ENSMUSG00000005968 Tuft1 - - 3|3 F2.1 tuftelin 1 protein-coding 97847 X98554 - - - expressed sequence X98554 unknown 18636 Mm.3064 NM_008823 ENSMUSG00000001128 Cfp BCFG|Pfc - X A1.3|X 16.44 cM complement factor properdin protein-coding 26450 Mm.440564 NM_015754 ENSMUSG00000027428 Rbbp9 Bog - 2|2 G1 retinoblastoma binding protein 9, serine hydrolase protein-coding 217705 Mm.259468 NM_172581 ENSMUSG00000021234 Fam161b 9330169D17|9830169C18Rik - 12|12 D1 family with sequence similarity 161, member B protein-coding 100125399 Femwf4 - - - femur work to failure 4 unknown 29832 Del(11)13Brd - - - deletion, Chr 11, Bradley 13 other 100043714 Gm10774 - - 2|2 F1 polymerase (RNA) II (DNA directed) polypeptide L pseudogene pseudo 105246416 Gm41706 - - 18|18 predicted gene, 41706 ncRNA 667279 Rps2-ps10 EG667279|Gm8553 - 18|18 E1 ribosomal protein S2, pseudogene 10 pseudo 100034986 Skmw8 - - - skeletal muscle weight 8 unknown 102637612 XR_380564 Gm34376 - - 10 B5.3|10 predicted gene, 34376 ncRNA 73626 Mm.425319 NM_023707 ENSMUSG00000094808 1810009J06Rik - - 6|6 B1 RIKEN cDNA 1810009J06 gene protein-coding 259099 Mm.377841 NM_147095 ENSMUSG00000073915 Olfr676 MOR32-1 - 7|7 E3 olfactory receptor 676 protein-coding 100035534 Tnbs1 - - 9 46.41 cM tri-nitrobenzene sulfonic acid susceptible 1 unknown 108093 Tcra-V13.5 - - - T cell receptor alpha variable region family 13 subfamily 5 other 105244711 XR_872490 Gm40269 - - 12 A1.1|12 predicted gene, 40269 ncRNA 100504234 Mm.291807 NM_001195672 ENSMUSG00000019767 Ccdc170 Gm221 - 10|10 A1 coiled-coil domain containing 170 protein-coding 239556 Mm.291058 NM_001044308 ENSMUSG00000022416 Cacna1i Ca(V)3.3 - 15|15 E1 calcium channel, voltage-dependent, alpha 1I subunit protein-coding 52765 D1Bwg0318e - - - DNA segment, Chr 1, Brigham & Women's Genetics 0318 expressed unknown 102635616 XR_381661 Gm32906 - - 12 C2|12 predicted gene, 32906 ncRNA 102637643 Mm.123309 XR_375320 Gm34403 - - 2 H3|2 predicted gene, 34403 ncRNA 105243274 XR_879148 Gm39239 - - 8 D3|8 predicted gene, 39239 ncRNA 432596 LOC432596 - - 11|11 D uncharacterized LOC432596 protein-coding 102640123 Gm14404 - - 2|2 99.36 cM predicted gene 14404 pseudo 17736 TrnL2 - - - tRNA tRNA 258851 Mm.377719 NM_146852 ENSMUSG00000070820 Olfr1339 MOR258-2 - 4|4 D2.1 olfactory receptor 1339 protein-coding 102637030 Gm33941 - - 17|17 predicted gene, 33941 ncRNA 62078 D10Mit63 - - 10 35.02 cM DNA segment, Chr 10, Massachusetts Institute of Technology 63 unknown 319367 Mm.450687 Ict1os C920011F04Rik - 11|11 immature colon carcinoma transcript 1, opposite strand protein-coding 77808 Gm44196 A930015G24Rik - 6|6 predicted gene, 44196 protein-coding 109772 Tcp9 Tcp-9 - - t-complex protein 9 protein-coding 112094 Bglq7 - - - body growth late QTL 7 unknown 108168702 Trnav-cac - - - transfer RNA valine (anticodon CAC) tRNA 674135 Gm9574 672718 - 17|17 B1 histocompatibility 2, T region pseudogene pseudo 319217 Mm.246646 NM_175674 ENSMUSG00000116028 Vmn2r7 4933425M15Rik - 3|3 E1 vomeronasal 2, receptor 7 protein-coding 75878 Mm.370607 NR_131036 ENSMUSG00000112924 4930579P08Rik - - 10|10 D2 RIKEN cDNA 4930579P08 gene ncRNA 108167670 Gm17415 - - 1 D|1 47.24 cM 60S ribosomal protein L7a pseudogene pseudo 108168803 XR_001783501 Gm46769 - - 2 G3|2 predicted gene, 46769 ncRNA 100302460 Rpl7a-ps13 Gm14691 - X|X A7.1 ribosomal protein L7A, pseudogene 13 pseudo 633120 Gm7105 EG633120 - 19 A|19 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 105246647 XR_878330 Gm41905 - - 1 C5|1 predicted gene, 41905 ncRNA 320199 Mm.448266 F830004D09Rik - - 17|17 RIKEN cDNA F830004D09 gene protein-coding 72942 2900045O03Rik - - 16|16 RIKEN cDNA 2900045O03 gene unknown 110120384 LOC110120384 - - - VISTA enhancer mm139 biological-region 666561 XR_001781247 Gm8165 EG666561 - 14|14 C1 predicted gene 8165 protein-coding 100417588 Gm18701 - - 1|1 G1 5'-nucleotidase domain containing 2 pseudogene pseudo 102633739 XR_379090 Gm31492 - - 9 A1|9 predicted gene, 31492 ncRNA 61986 D9Mit304 - - 9 38.58 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 304 unknown 73946 4930423O20Rik - - 16|16 RIKEN cDNA 4930423O20 gene protein-coding 29845 Mm.88841 NM_019473 ENSMUSG00000071000 Olfr155 GA_x5J8B7W5BNN-979337-980296|MOR262-14|OR37A|Olfr37a|mOR37a - 4|4 B1 olfactory receptor 155 protein-coding 109280152 LOC109280152 Mm1376 - - VISTA enhancer mm1376 biological-region 319205 4732499D12Rik - - 13|13 RIKEN cDNA 4732499D12 gene protein-coding 105244508 XR_867489 Gm40102 - - 3 F2.1|3 predicted gene, 40102 ncRNA 102635299 Gm32676 - - 7 F1|7 predicted gene, 32676 pseudo 105070 AA407175 - - - expressed sequence AA407175 protein-coding 19085 Mm.306163 NM_008923 ENSMUSG00000025855 Prkar1b AI385716|RIbeta - 5 G2|5 77.74 cM protein kinase, cAMP dependent regulatory, type I beta protein-coding 668530 Gm9225 EG668530 - X|X E1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 114064 Heal1 - - 8 52.0 cM wound healing/regeneration 1 unknown 18013 Mm.4814 NM_010895 ENSMUSG00000038255 Neurod2 Ndrf|bHLHa1 - 11 D|11 61.75 cM neurogenic differentiation 2 protein-coding 66169 Mm.291868 NM_025394 ENSMUSG00000028998 Tomm7 1110020J08Rik|AW047273|Tom7 - 5|5 A3 translocase of outer mitochondrial membrane 7 protein-coding 621903 Dppa3-ps EG621903|Gm6269 - X|X A3.3 developmental pluripotency-associated 3, pseudogene pseudo 105244843 XR_869179 Gm40377 Gm44362 - 6 C1|6 predicted gene, 40377 ncRNA 12273 Mm.247623 NM_007577 ENSMUSG00000049130 C5ar1 C5aR|C5r1|Cd88|D7Msu1 - 7 A2|7 8.77 cM complement component 5a receptor 1 protein-coding 100526560 NR_037296 ENSMUSG00000093042 Mir3109 mir-3109|mmu-mir-3109 - 9 C|9 38.58 cM microRNA 3109 ncRNA 108168108 XM_017315696 LOC108168108 - - 13 D1 uncharacterized LOC108168108 protein-coding 100462664 Krtap29-1 Gm14195 - 11|11 keratin associated protein 29-1 protein-coding 112300 Lmb4 - - 10 34.29 cM lupus in MRL and B6 F2 cross, QTL 4 unknown 109698 Dh - - - dominant hemimelia unknown 329436 Mm.235448 NM_177843 Gm14461 A830093M07 - 2 C3|2 predicted gene 14461 protein-coding 545728 Mm.109461 NM_001310021 ENSMUSG00000095918 Gm5861 EG545728 - 5|5 A1 predicted gene 5861 protein-coding 105246689 XR_878464 Gm41937 - - 1 E2.3|1 predicted gene, 41937 ncRNA 77798 Mm.446685 NM_029982 ENSMUSG00000092210 A930009A15Rik - - 10|10 D2 RIKEN cDNA A930009A15 gene protein-coding 15180 Hcx CenX - - heterochromatin, Chr X other 100503369 Gm17584 - - X|X 49.81 cM predicted gene, 17584 protein-coding 100415989 Gm17857 - - X|X A3.2 predicted gene, 17857 pseudo 329972 Mm.247201 NM_177867 ENSMUSG00000045004 Spata21 4933414G08 - 4|4 D3 spermatogenesis associated 21 protein-coding 21219 T(5;16)55H T55H - - reciprocal translocation, Chr 5 and 16, Harwell 55 other 66245 Mm.6803 NM_024172 ENSMUSG00000063802 Hspbp1 1500019G21Rik - 7|7 A1 HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1 protein-coding 215951 Mm.89646 NM_145743 ENSMUSG00000038302 Afg1l CG8520|Lace1 - 10 B2|10 22.88 cM AFG1 like ATPase protein-coding 74621 Mm.444687 NR_152115 4930432L08Rik - - 5|5 C3.3 RIKEN cDNA 4930432L08 gene ncRNA 100316671 NR_130327 ENSMUSG00000080526 Mir466j Mirn466j|mmu-mir-466j - 10 B4|10 32.1 cM microRNA 466j ncRNA 102634020 Mm.421270 XR_386198 Gm31706 - - 18 B3|18 predicted gene, 31706 ncRNA 100040433 Gm2768 - - X A2|X predicted gene 2768 pseudo 102637116 Gm34010 - - 2|2 predicted gene, 34010 ncRNA 102632045 XR_001778491 Gm30220 - - 8 A1.1|8 predicted gene, 30220 ncRNA 66492 Mm.251155 NM_025594 ENSMUSG00000001383 Zmat2 2610510D14Rik|2900082I05Rik - 18|18 B2 zinc finger, matrin type 2 protein-coding 106981 Mm.486728 AU018728 - - - expressed sequence AU018728 protein-coding 106766 Mm.204991 NM_145934 ENSMUSG00000038781 Stap2 AW049765|STAP-2 - 17|17 D signal transducing adaptor family member 2 protein-coding 100306953 Mm.291447 4122401K19Rik - - - RIKEN cDNA 4122401K19 gene unknown 100039746 Gm2401 - - 4 A1|4 predicted gene 2401 pseudo 102631725 Mm.440695 XR_001782479 Gm29994 - - 18 B3|18 predicted gene, 29994 ncRNA 216767 Mm.259907 NM_175001 ENSMUSG00000020514 Mrpl22 E030011D16Rik|HSPC158|MRP-L25|Rpml25 - 11|11 B1.3 mitochondrial ribosomal protein L22 protein-coding 102637899 Gm34595 - - 8|8 predicted gene, 34595 protein-coding 102637556 Gm34334 - - 8|8 predicted gene, 34334 ncRNA 52696 Mm.62876 NM_025635 ENSMUSG00000019923 Zwint 2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1 - 10 B5.3|10 37.15 cM ZW10 interactor protein-coding 665796 Gm12021 - - 11|11 A3.1 signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 pseudogene pseudo 331195 Mm.26025 NM_177913 ENSMUSG00000094560 A430089I19Rik Gm16522 - 5|5 E3 RIKEN cDNA A430089I19 gene protein-coding 243822 Mm.333542 NM_172895 ENSMUSG00000092518 Fam71e2 4930401F20Rik - 7|7 A1 family with sequence similarity 71, member E2 protein-coding 621306 Gm6210 EG621306 - 6|6 C2 heat shock protein 8 pseudogene pseudo 102636625 XR_384426 Gm33636 - - 15 F1|15 predicted gene, 33636 ncRNA 62892 D11Mit215 - - 11 18.17 cM DNA segment, Chr 11, Massachusetts Institute of Technology 215 unknown 56596 204d20Sp6 - - - DNA segment, 204d20Sp6 unknown 258120 Mm.329753 NM_001011840 ENSMUSG00000096365 Olfr1463 MOR202-29P - 19|19 A olfactory receptor 1463 protein-coding 108168799 LOC108168799 - - 2 G1 60S ribosomal protein L35a pseudogene pseudo 62686 D16Mit122 - - 16 3.43 cM DNA segment, Chr 16, Massachusetts Institute of Technology 122 unknown 67678 Mm.246693 NM_026309 ENSMUSG00000034192 Lsm3 1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2 - 6|6 D1 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 432865 Rps12-ps2 EG432865|Gm5462 - 14|14 D1 ribosomal protein S12, pseudogene 2 pseudo 675537 Gm9645 - - 3 D|3 ribosomal protein L7A pseudogene pseudo 12569 Mm.142275 NM_009871 ENSMUSG00000048895 Cdk5r1 Cdk5r|D11Bwg0379e|p25|p35 - 11 B5|11 47.94 cM cyclin-dependent kinase 5, regulatory subunit 1 (p35) protein-coding 665102 Gm7492 EG665102 - 6|6 B1 general transcription factor IIB pseudogene pseudo 67725 Mm.317636 NM_026341 ENSMUSG00000021809 Nudt13 4933433B15Rik - 14|14 A3 nudix (nucleoside diphosphate linked moiety X)-type motif 13 protein-coding 110120462 LOC110120462 - - - VISTA enhancer mm1566 biological-region 66511 Mm.154136 NM_023215 ENSMUSG00000001017 Chtop 2500003M10Rik|Fop|Srag - 3|3 F1 chromatin target of PRMT1 protein-coding 100417784 Gm18824 - - 3|3 A3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 pseudogene pseudo 105245640 Gm41068 - - 13|13 predicted gene, 41068 ncRNA 74356 Mm.204876 NM_028888 ENSMUSG00000014837 4931428F04Rik AI426165|Kiaa0895l - 8|8 D3 RIKEN cDNA 4931428F04 gene protein-coding 53018 CA7.3 - - - DNA segment, CA7.3 unknown 22258 Mm.3974 NM_011678 ENSMUSG00000032612 Usp4 F730026I20Rik|Unp|mKIAA4155 - 9 F2|9 59.25 cM ubiquitin specific peptidase 4 (proto-oncogene) protein-coding 105243518 Gm39416 - - 9|9 predicted gene, 39416 ncRNA 109286568 LOC109286568 - - - Isl1 3' enhancer region biological-region 320095 Mm.442175 NM_001145351 ENSMUSG00000074646 6430550D23Rik - - 2|2 H1 RIKEN cDNA 6430550D23 gene protein-coding 116945 Naad3 - - - Neu associated allelic deletion 3 other 102641078 XR_389894 Gm38531 - - 6 G3|6 predicted gene, 38531 ncRNA 110002 Dgsb - - - DiGeorge syndrome gene b protein-coding 76510 Mm.158902 NM_029640 ENSMUSG00000047921 Trappc9 1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882 - 15|15 D3 trafficking protein particle complex 9 protein-coding 105246715 Mm.446578 Gm41959 - - 1|1 predicted gene, 41959 ncRNA 67795 Mm.204591 NM_001146342 ENSMUSG00000071573 Rnls 6530404N21Rik|AI452315|AW060440|C10orf59 - 19|19 C1 renalase, FAD-dependent amine oxidase protein-coding 15458 Mm.3485 NM_017371 ENSMUSG00000030895 Hpx Hpxn|hx - 7|7 E3 hemopexin protein-coding 404478 Olfr1114-ps1 - - 2|2 D olfactory receptor 1114, pseudogene 1 pseudo 62772 D16Mit156 - - 16 16.88 cM DNA segment, Chr 16, Massachusetts Institute of Technology 156 unknown 69397 Mm.307084 NM_027070 ENSMUSG00000060715 1700019A02Rik - - 1|1 C1.1 RIKEN cDNA 1700019A02 gene protein-coding 620105 Igkv1-35 Gm16688|cu2 - 6|6 C1 immunoglobulin kappa variable 1-35 other 494468 Mm.271980 NM_001009575 ENSMUSG00000072969 Armcx5 AW556585 - X|X F1 armadillo repeat containing, X-linked 5 protein-coding 102640560 Mm.417249 NR_152768 Gm36595 - - 10 B4|10 predicted gene, 36595 ncRNA 319164 Mm.261973 NM_178189 ENSMUSG00000069270 Hist1h2ac - - 13|13 A3.1 histone cluster 1, H2ac protein-coding 380687 NM_001001978 Gm5138 - - 6 C3|6 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102635788 XR_386700 Gm33036 - - 19 C3|19 predicted gene, 33036 ncRNA 108103 Supt5-rs1 Supt5h-rs1 - - suppressor of Ty 5, related sequence 1 protein-coding 101706 Mm.27259 NM_133947 ENSMUSG00000066306 Numa1 6720401E04Rik|AA764025|AL022610|AU014979|NuMA - 7|7 E2 nuclear mitotic apparatus protein 1 protein-coding 667675 Gm8755 EG667675 - 18|18 E1 predicted gene 8755 pseudo 381832 Mm.441627 NM_001024705 ENSMUSG00000107874 Prpmp5 MP5 - 6|6 G1 proline-rich protein MP5 protein-coding 11513 Mm.288206 NM_007406 ENSMUSG00000031659 Adcy7 AA407758 - 8 C3|8 43.06 cM adenylate cyclase 7 protein-coding 214106 Mm.73212 NM_177607 ENSMUSG00000058046 4933430I17Rik bN189G18.7 - 4|4 B3 RIKEN cDNA 4933430I17 gene protein-coding 70376 Mm.20928 1700026H06Rik BB015768 - - RIKEN cDNA 1700026H06 gene protein-coding 100124559 Vmn2r-ps63 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 63 pseudo 100101418 Pbwg1.7 - - - postnatal body weight growth 1.7 unknown 319888 Mm.183576 NM_177028 ENSMUSG00000046610 Oacyl 5330437I02Rik|Acyl3 - 18|18 E1 O-acyltransferase like protein-coding 100504672 Mm.491800 AA666905 - - 4 E2|4 expressed sequence AA666905 unknown 319750 Mm.383485 NR_077237 ENSMUSG00000089633 A230009B12Rik - - 17|17 A1 RIKEN cDNA A230009B12 gene ncRNA 21230 T(6;12)32H T32H - - reciprocal translocation, Chr 6 and 12, Harwell 32 other 71001 Mm.158529 NM_183292 ENSMUSG00000046367 Mgat4e 4931440L10Rik - 1|1 E4 MGAT4 family, member E protein-coding 20621 Mm.325800 NM_009223 ENSMUSG00000037972 Snn 2810407J07Rik|AI848521|AW547286 - 16|16 A1 stannin protein-coding 258430 Mm.271358 NM_146438 ENSMUSG00000048501 Olfr938 MOR171-25 - 9|9 A5.1 olfactory receptor 938 protein-coding 99440 BB045044 - - - expressed sequence BB045044 unknown 105245600 XR_873842 Gm41031 - - 13 D1|13 predicted gene, 41031 ncRNA 108236 Krt6-ps1 Krt2-6-ps1|mK6[Y]1 - 15 F2 keratin 6, pseudogene 1 pseudo 12770 Mm.423532 NM_007718 ENSMUSG00000064039 Ccr1l1 Cmkbr1l1 - 9 F4|9 75.05 cM chemokine (C-C motif) receptor 1-like 1 protein-coding 100316818 NR_035488 ENSMUSG00000088141 Mir1962 mir-1962|mmu-mir-1962 - 7 F3|7 81.27 cM microRNA 1962 ncRNA 108168750 XR_001783287 Gm46737 - - 2 B|2 predicted gene, 46737 ncRNA 110667 Yb1a - - - YB-1 DNA binding protein related sequence a protein-coding 668213 Gm9048 EG668213 - 10|10 D2 predicted gene 9048 pseudo 100047092 Gm20567 - - 18|18 D3 heat shock protein 1 (chaperonin) pseudogene pseudo 103800 Mm.390367 AI606797 - - - expressed sequence AI606797 unknown 258824 Mm.271536 NM_146827 ENSMUSG00000044205 Olfr983 MOR162-1 - 9|9 A5.1 olfactory receptor 983 protein-coding 71912 Mm.45137 NM_028001 ENSMUSG00000020216 Jsrp1 2300003C06Rik|2310032K21Rik|JP-45|JP45 - 10|10 C1 junctional sarcoplasmic reticulum protein 1 protein-coding 12338 Mm.30290 NM_007603 ENSMUSG00000067276 Capn6 - - X|X F2 calpain 6 protein-coding 102639794 XR_001781420 LOC102639794 - - 14 B uncharacterized LOC102639794 ncRNA 61103 D1Mit501 - - 1 64.93 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 501 unknown 109136573 LOC109136573 - - - Fgf8 enhancer CR1 biological-region 100035480 Bmd29 Bmd22 - - bone mineral density 29 unknown 100312576 Vmn1r-ps91 - - - vomeronasal 1 receptor Vmn1r-ps91 pseudogene pseudo 110354841 LOC110354841 - - - Ibsp 5' regulatory region biological-region 108503 Minth - - - Moloney MuLV integration site, EC cells, h other 100041372 Gm13722 - - 2|2 D ring finger protein (C3H2C3 type) 6 pseudogene pseudo 320538 Mm.302831 NM_177185 ENSMUSG00000038538 Ubn2 2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030 - 6|6 B1 ubinuclein 2 protein-coding 195297 Trav16 Gm13896|Gm16837|Trav16n - 14|14 C2 T cell receptor alpha variable 16 other 100042734 Gm10073 - - 8|8 D3 ribosomal protein, large, P1 pseudogene pseudo 66400 Mm.196150 NM_025538 ENSMUSG00000002661 Alkbh7 2310045B01Rik|2510008E23Rik|Abh7|Spata11 - 17|17 D alkB homolog 7 protein-coding 13525 Mm.334510 NM_010085 ENSMUSG00000048516 Adam26a Adam26|Dtgn4 - 8|8 A4 a disintegrin and metallopeptidase domain 26A (testase 3) protein-coding 100040999 Mm.394588 NR_036607 ENSMUSG00000079076 Gm3086 - - 12|12 C2 RuvB-like protein 1 pseudogene pseudo 664854 Gm7370 - - 12|12 B2 ribosomal protein S2 pseudogene pseudo 271144 Mm.470057 NM_001042714 ENSMUSG00000047117 Ankdd1b 9330128J19Rik - 13|13 D1 ankyrin repeat and death domain containing 1B protein-coding 330183 Mm.413133 NR_046178 ENSMUSG00000085708 Gm16063 G630008E18 - 5|5 F predicted gene 16063 ncRNA 434317 LOC434317 - - 8|8 B3.1 uncharacterized LOC434317 unknown 105245507 XR_873430 Gm40955 - - 13 B1|13 predicted gene, 40955 ncRNA 102637657 Gm29346 - - 1|1 predicted gene 29346 ncRNA 328660 Mm.441006 NM_001033539 ENSMUSG00000075269 Bex6 B020003O03Rik - 16|16 B2 brain expressed family member 6 protein-coding 108437 Xmmv57 Xmmv-57|Xp-16 - - xenotropic-MCF leukemia virus 57 other 108167966 XR_001780521 Gm46323 - - 12 A1.1|12 predicted gene, 46323 ncRNA 100101408 Irav1 - - - immune response to adenovirus 1 unknown 100526472 NR_037230 ENSMUSG00000095147 Mir3070a mir-3070-1|mmu-mir-3070-1|mmu-mir-3070a - 12 F1|12 60.37 cM microRNA 3070a ncRNA 100316783 NR_035413 ENSMUSG00000080662 Mir1b Mir1-2-as|Mir1-2as|Mirn1-2as|mir-1b|mmu-mir-1-2-as|mmu-mir-1b - 18 A1|18 5.4 cM microRNA 1b ncRNA 100503696 LOC100503696 - - - uncharacterized protein C2orf16-like protein-coding 620283 Gm6140 EG620283 - 3|3 A1 poly(rC) binding protein 2 pseudogene pseudo 100042807 Mm.329403 NM_001256055 ENSMUSG00000043424 Eif3j2 Eif3j-2|Gm9781|eIF3 p35|eIF3j-B - 18|18 B3 eukaryotic translation initiation factor 3, subunit J2 protein-coding 27376 Mm.3991 NM_013770 ENSMUSG00000025792 Slc25a10 Dic - 11|11 E2 solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10 protein-coding 30963 Mm.241205 NM_013935 ENSMUSG00000063275 Hacd1 Ptpla - 2|2 A1 3-hydroxyacyl-CoA dehydratase 1 protein-coding 102633210 LOC102633210 - - 3 G3 ornithine decarboxylase antizyme 2 pseudogene pseudo 66314 Mm.136648 NM_025482 ENSMUSG00000000827 Tpd52l2 2810411G23Rik|AU016537|C86069|D54 - 2|2 H4 tumor protein D52-like 2 protein-coding 102636739 XR_881285 Gm33729 - - 4 B2|4 predicted gene, 33729 ncRNA 112352683 LOC112352683 - - - mitochondrial ribosomal protein S16 pseudogene pseudo 111302 Hmgn2-rs4 Hmg17-rs4 - - high mobility group nucleosomal binding domain 2. related sequence 4 pseudo 62742 D18Mit152 - - 18 34.78 cM DNA segment, Chr 18, Massachusetts Institute of Technology 152 unknown 12683 Mm.449 NM_007702 ENSMUSG00000024526 Cidea AW212747 - 18|18 E1 cell death-inducing DNA fragmentation factor, alpha subunit-like effector A protein-coding 210465 Vmn2r-ps123 EG210465|Gm4765 - 17|17 A3.2 vomeronasal 2, receptor, pseudogene 123 pseudo 102465204 NR_105809 ENSMUSG00000098480 Mir6387 Gm27281|mmu-mir-6387 - 12|12 A1.1 microRNA 6387 ncRNA 62624 D13Mit204 - - 13 65.43 cM DNA segment, Chr 13, Massachusetts Institute of Technology 204 unknown 100040292 Gm13197 - - 2|2 A1 predicted gene 13197 pseudo 668033 Gm8935 EG668033|Gm8935b - 3|3 A1 predicted pseudogene 8935 pseudo 667842 Gm8840 EG667842 - 1|1 C3 predicted gene 8840 pseudo 100503415 Gm19680 - - 1|1 B polyamine oxidase (exo-N4-amino) pseudogene pseudo 114270 Manh6 QTL-SH5.1 - - mandible shape 6 unknown 100217463 NR_028557 Snord98 MBII-419 - 10 B4|10 small nucleolar RNA, C/D box 98 snoRNA 225743 Mm.23293 NM_001164504 ENSMUSG00000025427 Rnf165 2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96 - 18|18 E3 ring finger protein 165 protein-coding 74348 4632404M16Rik - - 3|3 RIKEN cDNA 4632404M16 gene protein-coding 239766 Mm.208751 NM_001004151 ENSMUSG00000033383 Rtp1 Gm1766|Gm604 - 16|16 B1 receptor transporter protein 1 protein-coding 493147 msrvh1 - - - modifier of susceptibility to renal vascular hypertrophy/hyperplasia 1 unknown 404384 Olfr258-ps1 MOR105-11|MOR105-6P|Olfr423-ps1 - 1|1 H3 olfactory receptor 258, pseudogene 1 pseudo 64250 Snord116l7 Gm23524|Pwcr1l7 - - small nucleolar RNA, C/D box 116-like 7 snoRNA 102467452 n-TAagc13 n-Ta13 - 13 A3.1|13 nuclear encoded tRNA alanine 13 (anticodon AGC) tRNA 105246304 XR_876914 Gm41608 - - 17 E1.1|17 predicted gene, 41608 ncRNA 545758 Mm.332426 NM_001024147 ENSMUSG00000060204 Gm5868 EG545758 - 5 C3.2|5 predicted gene 5868 protein-coding 102638479 Gm35032 - - 2|2 predicted gene, 35032 ncRNA 435373 Gm5666 EG435373 - 13|13 C3 high mobility group box 3 pseudogene pseudo 546811 Gm5982 EG546811 - 3|3 G3 ribosomal protein L18 pseudogene pseudo 100417602 Gm18708 - - 13|13 A3.3 craniofacial development protein 1 pseudogene pseudo 105244409 Gm40022 - - 2 F3|2 predicted gene, 40022 pseudo 14894 Mm.2080 NM_008187 ENSMUSG00000031796 Cfap20 2600014O15Rik|AL024127|Gtl3|T10-2A2 - 8|8 C5 cilia and flagella associated protein 20 protein-coding 109280095 LOC109280095 Mm881 - - VISTA enhancer mm881 biological-region 100035361 Etax2 - - - ethanol induced ataxia 2 unknown 60829 D4Mit74 - - 4 51.69 cM DNA segment, Chr 4, Massachusetts Institute of Technology 74 unknown 75941 Mm.437836 4930570B17Rik - - 15|15 RIKEN cDNA 4930570B17 gene protein-coding 100504022 Gm20018 - - 16 B2|16 19.7 cM predicted gene, 20018 pseudo 12607 Mm.24169 NM_009882 ENSMUSG00000024081 Cebpz AI848081|CBF2|Cbf|Cebpa-rs1 - 17|17 E3 CCAAT/enhancer binding protein zeta protein-coding 723830 NR_029788 ENSMUSG00000065494 Mir28a Mir28|Mirn28|mmu-mir-28|mmu-mir-28a - 16|16 B1 microRNA 28a ncRNA 112031 Lwq7 - - - liver weight QTL 7 unknown 85065 D4Mit57 - - 4 54.27 cM DNA segment, Chr 4, Massachusetts Institute of Technology 57 unknown 105247278 XR_882281 Gm42405 - - X A3.3|X predicted gene, 42405 ncRNA 242481 Mm.331630 NM_172868 ENSMUSG00000090053 Palm2 53-H12|B130066I24|R75368|pEN70 - 4|4 B3 paralemmin 2 protein-coding 105244821 XR_872629 ENSMUSG00000085472 Gm15691 - - 12 A2|12 13.0 cM predicted gene 15691 ncRNA 102638170 XR_373792 Gm34797 - - 1 H5|1 predicted gene, 34797 ncRNA 624584 XM_892661 Scgb2b10 Abpbg10|EG624584|Gm6513 - 7|7 B1 secretoglobin, family 2B, member 10 protein-coding 109735 War - - - warfarin resistance unknown 102632425 XM_017316341 Gm30500 - - 14 D2|14 predicted gene, 30500 protein-coding 100504703 Mm.387029 NR_040660 ENSMUSG00000112639 A730063M14Rik - - 10|10 D3 RIKEN cDNA A730063M14 gene ncRNA 637379 Gm7206 EG637379 - 14|14 C1 predicted pseudogene 7206 protein-coding 12622 Mm.6780 NM_009887 ENSMUSG00000038192 Cer1 Cerl|Cerl1|Cerr1|cer-1 - 4 C3|4 39.4 cM cerberus 1, DAN family BMP antagonist protein-coding 74748 Mm.179812 NM_029084 ENSMUSG00000053318 Slamf8 5830408F06Rik|Blame|SBBI42 - 1|1 H3 SLAM family member 8 protein-coding 671033 Gm15170 - - X|X F4 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 102634360 XR_386330 Gm31960 - - 18 E2|18 predicted gene, 31960 ncRNA 100415784 Mm.400421 NR_033486 Gm17830 - - 17 C|17 25.05 cM predicted gene, 17830 ncRNA 258360 Mm.377457 NM_146363 ENSMUSG00000048080 Olfr731 MOR246-5 - 14|14 C1 olfactory receptor 731 protein-coding 72286 Mm.396207 NR_045345 ENSMUSG00000100198 1700030O20Rik - - 10|10 D2 RIKEN cDNA 1700030O20 gene ncRNA 236574 NM_001167913 ENSMUSG00000073457 Smok2b Gm1847|Smok+129 - 17|17 A1 sperm motility kinase 2B protein-coding 243371 Mm.290764 NM_177736 ENSMUSG00000073096 Lrrc61 BC027309 - 6|6 B2.3 leucine rich repeat containing 61 protein-coding 67753 Mm.25097 NM_027089 ENSMUSG00000028575 Eqtn 1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts - 4|4 C5 equatorin, sperm acrosome associated protein-coding 102639334 Gm35670 - - Y|Y predicted gene, 35670 ncRNA 111072 Odc-rs9 BRS-9|Odc-9 - - ornithine decarboxylase, related sequence 9 pseudo 30934 Mm.249164 NM_133673 ENSMUSG00000026848 Tor1b 2610016F05Rik|DQ1|torsinB - 2|2 B torsin family 1, member B protein-coding 27529 D0Mnp3 MUS235-1 - - DNA segment, Montpellier 3 unknown 102633855 Gm31582 - - 8|8 predicted gene, 31582 ncRNA 62048 DXMit230 - - X 44.18 cM DNA Segment, Chr X, Massachusetts Institute of Technology 230 unknown 666883 Gm8345 EG666883 - 13 C2|13 ATP-binding cassette, sub-family F (GCN20), member 2 pseudogene pseudo 77852 D730047P14Rik - - 9|9 RIKEN cDNA D730047P14 gene protein-coding 74030 Mm.228799 NM_028724 ENSMUSG00000001768 Rin2 2010003K16Rik|4632403N06Rik|AW821980|RASSF4 - 2|2 G1 Ras and Rab interactor 2 protein-coding 102639396 Mm.404529 NR_152765 Gm35722 - - 10 D1|10 predicted gene, 35722 ncRNA 14998 Mm.16373 NM_010386 ENSMUSG00000037649 H2-DMa H-2Ma|H2-Ma - 17 B1|17 17.98 cM histocompatibility 2, class II, locus DMa protein-coding 102631843 Mm.291407 XR_375647 Gm30074 - - 3 C|3 predicted gene, 30074 ncRNA 383644 Gm5269 EG383644 - 1|1 C1.1 predicted gene 5269 pseudo 111577 Xmv60 Xmv-60 - - xenotropic murine leukemia virus 60 other 404427 Olfr793-ps1 GA_x5J8B7W6HFP-3168293-3169194 - 10|10 D3 olfactory receptor 793, pseudogene 1 pseudo 100101632 9530067D14Rik - - - Riken cDNA 9530067D14 gene protein-coding 62300 D1Mit116 - - 1 83.16 cM DNA segment, Chr 1, Massachusetts Institute of Technology 116 unknown 233038 Mm.224815 NM_001081115 ENSMUSG00000047586 Nccrp1 1190020J12Rik|Gm163|NCCRP-1 - 7|7 B1 non-specific cytotoxic cell receptor protein 1 homolog (zebrafish) protein-coding 666099 Gm7929 EG666099 - 14|14 B predicted gene 7929 protein-coding 12416 Mm.14547 NM_007623 ENSMUSG00000025577 Cbx2 M33|MOD2|pc - 11 E2|11 83.33 cM chromobox 2 protein-coding 102637707 XR_373331 Gm34448 - - 1 B|1 predicted gene, 34448 ncRNA 102635748 XR_390458 Gm33008 - - 4 A5|4 predicted gene, 33008 ncRNA 111957 Iap3rc24 - - - intracisternal A-type particle, U3 region, SINE repeat c-24 other 100418137 Gm19025 - - 12|12 C3 Shwachman-Bodian-Diamond syndrome homolog pseudogene pseudo 70281 Mm.484037 NR_028124 ENSMUSG00000100084 2310068J16Rik - - 15|15 F1 RIKEN cDNA 2310068J16 gene ncRNA 108168897 LOC108168897 - - 3 G1 40S ribosomal protein S28 pseudogene pseudo 21265 T(7;17)3Bkm T3Bkm - - reciprocal translocation, Chr 7 and 17, Benova/Koleva/Manolova 3 other 240411 Mm.380247 NM_172834 ENSMUSG00000032818 Loxhd1 1700096C21Rik|4932417K07|sba - 18|18 E3 lipoxygenase homology domains 1 protein-coding 67997 Mm.385462 NM_026500 ENSMUSG00000026404 Ddx59 1210002B07Rik|4833411G06Rik - 1|1 E4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 protein-coding 102639059 XR_381823 Gm35463 - - 12 E|12 predicted gene, 35463 ncRNA 102638411 Gm34986 - - 3|3 predicted gene, 34986 ncRNA 724020 Mm.424965 NR_073569 Klrb1-ps1 Nkrp1e - 6|6 F3 killer cell lectin-like receptor subfamily B member 1, pseudogene 1 pseudo 102639768 XR_389689 Gm36000 - - 3 B|3 predicted gene, 36000 ncRNA 100526557 NR_037280 ENSMUSG00000093097 Mir3097 mir-3097|mmu-mir-3097 - 5 B2|5 17.98 cM microRNA 3097 ncRNA 110164 Tctex9 Tctex-9 - - t-complex testis-expressed 9 protein-coding 108168366 LOC108168366 - - 18 E1 40S ribosomal protein S16 pseudogene pseudo 104272 Caf - - - caffeine susceptibility unknown 62295 D1Mit1001 D19Mit72 - 1|1 DNA segment, Chr 1, Massachusetts Institute of Technology 1001 unknown 105245554 XR_873656 Gm40998 - - 13 C1|13 predicted gene, 40998 ncRNA 102633230 LOC102633230 - - 11 D cytochrome c oxidase subunit 5A, mitochondrial pseudogene pseudo 66438 Mm.389860 NM_183257 ENSMUSG00000056978 Hamp2 1810073K19Rik|HEPC2 - 7 B1|7 19.27 cM hepcidin antimicrobial peptide 2 protein-coding 20935 Mm.245577 NM_009298 ENSMUSG00000036160 Surf6 D2Wsu129e|Surf-6 - 2 A3|2 19.08 cM surfeit gene 6 protein-coding 18415 Mm.39330 NM_011020 ENSMUSG00000025757 Hspa4l 94kDa|AI461691|APG-1|Osp94 - 3|3 B heat shock protein 4 like protein-coding 76969 Mm.38021 NM_023850 ENSMUSG00000027221 Chst1 2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KS6ST|KSGAL6ST|KSST - 2|2 E1 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 protein-coding 11735 Mm.235960 NM_009670 ENSMUSG00000069601 Ank3 2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G - 10 B5.3|10 36.1 cM ankyrin 3, epithelial protein-coding 16380 Is(7;1)40H Is40H - - insertion, Chr 7 and 1, Harwell 40 other 102633405 XR_391003 Gm31239 - - 4 E2|4 predicted gene, 31239 ncRNA 100041395 Gm3313 - - 5 A1|5 predicted gene 3313 pseudo 114580 Yaail - - - Yaa interacting locus unknown 62355 D1Mit461 - - 1 89.95 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 461 unknown 257932 Mm.340097 NM_001011770 ENSMUSG00000050813 Olfr332 MOR284-2 - 11|11 B1.3 olfactory receptor 332 protein-coding 108168220 Gm46501 - - 15 E1|15 predicted gene, 46501 pseudo 627872 Mm.184692 NM_001252070 ENSMUSG00000096141 Dnah7a Dnahc7|Dnahc7a|Gm992 - 1|1 C1.1 dynein, axonemal, heavy chain 7A protein-coding 105244188 XR_866397 Gm39840 - - 2 C2|2 predicted gene, 39840 ncRNA 112428 Lrnx6 - - - learning contextual 6 unknown 102633315 Mm.437828 NR_110510 ENSMUSG00000086134 Gm16159 - - 8 A2|8 14.17 cM predicted gene 16159 ncRNA 60777 D3Mit14 - - 3 61.32 cM DNA segment, Chr 3, Massachusetts Institute of Technology 14 unknown 102638405 XR_386258 Gm34982 - - 18 D3|18 predicted gene, 34982 ncRNA 100316687 NR_035449 ENSMUSG00000087820 Mir1928 mmu-mir-1928 - 1 C3|1 38.46 cM microRNA 1928 ncRNA 52014 Mm.199964 NM_030250 ENSMUSG00000023068 Nus1 1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e - 10 B3|10 26.64 cM NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 16165 Mm.368330 NM_008356 ENSMUSG00000031289 Il13ra2 CD213a2|IL-13R-alpha-2 - X F2|X 68.46 cM interleukin 13 receptor, alpha 2 protein-coding 74539 9030425L15Rik - - 19|19 RIKEN cDNA 9030425L15 gene protein-coding 192292 Mm.292040 NM_147201 ENSMUSG00000029148 Nrbp1 B230344L17Rik|Nrbp - 5|5 B1 nuclear receptor binding protein 1 protein-coding 257876 Olfr400-ps1 MOR255-7P - 11|11 B5 olfactory receptor 400, pseudogene 1 pseudo 61328 D3Mit188 - - 3 40.51 cM DNA segment, Chr 3, Massachusetts Institute of Technology 188 unknown 18372 Mm.391567 NM_207201 ENSMUSG00000094080 Olfr8 GA_x5J8B7TNKDU-1250-1574|MOR139-5P - 10|10 C1 olfactory receptor 8 protein-coding 13809 Mm.1193 NM_007934 ENSMUSG00000028024 Enpep 6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51 - 3 G3|3 57.92 cM glutamyl aminopeptidase protein-coding 70935 Mm.332225 NM_027609 ENSMUSG00000058643 Speer4f1 4922502J04Rik|SPEER-4F|Speer4f - 5|5 A3 spermatogenesis associated glutamate (E)-rich protein 4F1 protein-coding 108168061 Gm46399 - - 13 D2.3|13 PHD finger-like domain-containing protein 5A pseudogene pseudo 319527 Mm.32145 NM_176936 B230325K18Rik - - 7|7 F3 RIKEN cDNA B230325K18 gene unknown 212198 Mm.342082 NM_177602 ENSMUSG00000040877 Wdr25 B930090D16Rik - 12|12 F1 WD repeat domain 25 protein-coding 102640037 Gm36206 - - 2|2 predicted gene, 36206 ncRNA 66917 Mm.103534 NM_025844 ENSMUSG00000001774 Chordc1 1110001O09Rik|AA409036|Chp-1|morgana - 9|9 A2 cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 protein-coding 105247014 Mecomos Gm16722 - 3|3 12.7 cM MDS1 and EVI1 complex locus, opposite strand ncRNA 399674 Mm.377923 NM_207271 ENSMUSG00000058005 Tdpoz3 - - 3|3 F2.1 TD and POZ domain containing 3 protein-coding 52594 D11Ertd437e - - 11 51.34 cM DNA segment, Chr 11, ERATO Doi 437, expressed unknown 666953 Gm12516 - - 4|4 B3 predicted gene 12516 pseudo 100503143 Gm19572 - - 9 E1|9 43.36 cM spindle and kinetochore-associated protein 2-like pseudo 67985 Mm.298030 NM_026492 ENSMUSG00000079705 Ssxb1 4930414C09Rik - X|X A1.1 synovial sarcoma, X member B1 protein-coding 105246896 XR_880378 Gm42097 - - X A3.1|X predicted gene, 42097 ncRNA 102640582 Gm36612 - - 14|14 predicted gene, 36612 pseudo 111334 Cd1 - - - CD1 antigen complex other 209743 Mm.242899 NM_153509 ENSMUSG00000039313 AF529169 DD1|Kiaa1024 - 9|9 E3.1 cDNA sequence AF529169 protein-coding 102691 Mm.28854 AU024783 - - - expressed sequence AU024783 unknown 100042067 Rpl17-ps5 Gm10223 - 5|5 A3 ribosomal protein L17, pseudogene 5 pseudo 109485 Cplaq1 - - - circadian period of locomotor activity 1 unknown 21253 T(7;13)43Ad T43Ad - - reciprocal translocation, Chr 7 and 13, Adler 43 other 27675 D11Moh29 - - - DNA segment, Chr 11, KL Mohlke 29 unknown 382551 Mm.424732 NM_199201 ENSMUSG00000069607 Cd300ld3 AY457049|Cd300lh|Clm3|Lmir7|clm-3 - 11|11 E2 CD300 molecule like family member D3 protein-coding 109700 Mm.317280 NM_001033228 ENSMUSG00000042284 Itga1 CD49A|E130012M19Rik|Vla1 - 13 D2.2|13 64.61 cM integrin alpha 1 protein-coding 62552 D11Mit212 - - 11 54.34 cM DNA segment, Chr 11, Massachusetts Institute of Technology 212 unknown 381925 Mm.39184 NM_001080963 ENSMUSG00000070366 Plpp4 C030048B12Rik|Gm1090|Ppapdc1a - 7|7 F3 phospholipid phosphatase 4 protein-coding 62124 D13Mit13 - - 13 30.06 cM DNA segment, Chr 13, Massachusetts Institute of Technology 13 unknown 60975 D14Mit4 - - 14 24.6 cM DNA segment, Chr 14, Massachusetts Institute of Technology 4 unknown 217684 Mm.341776 NM_178682 ENSMUSG00000021133 Susd6 4933426M11Rik|mKIAA0247 - 12|12 C3 sushi domain containing 6 protein-coding 78753 Mm.195937 NM_023903 ENSMUSG00000056078 Lipm 4632427C23Rik|AW227514|Lipl3 - 19|19 C1 lipase, family member M protein-coding 100417868 Gm14852 - - X|X D fibronectin type III domain containing 3C2 pseudogene pseudo 100417757 Gm18809 - - 17|17 B1 histocompatibility 2, M region locus 9 pseudogene pseudo 100036476 Asbb1 sbb1 - - autoimmune susceptibility in C57BL/6J and BALB/c 1 unknown 545417 Mm.379955 NM_001081010 Olfr367-ps EG545417|MOR128-1|ORL1283|Olfr367 - 2|2 B olfactory receptor 367, pseudogene protein-coding 66650 Mm.90950 NM_025684 ENSMUSG00000038624 Nepn 5730521E12Rik|Npn|periolin - 10|10 B3 nephrocan protein-coding 381126 Mm.312276 NM_001033445 ENSMUSG00000042680 Garem1 C86169|Fam59a|Garem|Gm944|mKIAA4238 - 18|18 A2 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 27962 Mm.441352 D9Wsu90e - - 9 43.38 cM DNA segment, Chr 9, Wayne State University 90, expressed protein-coding 240327 Mm.357104 NM_001033767 ENSMUSG00000073555 Gm4951 EG240327|Ifgga2 - 18|18 D3 predicted gene 4951 protein-coding 62617 D13Mit170 - - 13 59.69 cM DNA segment, Chr 13, Massachusetts Institute of Technology 170 unknown 16913 Mm.180191 NM_010724 ENSMUSG00000024338 Psmb8 Lmp-7|Lmp7 - 17 B1|17 17.98 cM proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7) protein-coding 627214 Mm.323610 NM_001143802 ENSMUSG00000073805 Fam196a B830028B13Rik - 7|7 F3 family with sequence similarity 196, member A protein-coding 69080 Mm.23951 NM_133708 ENSMUSG00000033021 Gmppa 1810012N01Rik - 1|1 C4 GDP-mannose pyrophosphorylase A protein-coding 102632956 Gm12341 - - 11 B5|11 45.92 cM predicted gene 12341 pseudo 100503330 Mm.441316 AI464196 - - 3|3 expressed sequence AI464196 unknown 268294 Mm.258475 NM_153398 ENSMUSG00000019826 Zbtb24 BC055367|Bif1|Bsg1|ZNF450 - 10|10 B2 zinc finger and BTB domain containing 24 protein-coding 100534336 LOC100534336 - - X|X A6 karyopherin (importin) alpha 2 pseudogene pseudo 107697 Tcrg-J Jgamma1 - - T cell receptor gamma, joining region other 546100 Mm.471801 NR_151742 ENSMUSG00000098120 Gm5914 - - 8 D3|8 predicted gene 5914 ncRNA 100039042 Mm.423010 NM_001122662 ENSMUSG00000072905 Gm2016 - - 12 D2|12 predicted gene 2016 protein-coding 100036237 Cocia11 - - 13 28.71 cM cocaine induced activation 11 unknown 105245389 XM_017315275 Gm40853 - - 12 A1.2|12 predicted gene, 40853 protein-coding 664924 Gm20770 - - Y|Y predicted gene, 20770 pseudo 268782 Mm.482244 NM_001031851 ENSMUSG00000089678 Agxt2 AI303810|AI663818 - 15|15 A1 alanine-glyoxylate aminotransferase 2 protein-coding 75121 Mm.399253 4930511O05Rik - - 13|13 RIKEN cDNA 4930511O05 gene protein-coding 102641989 Gm38589 - - 10|10 predicted gene, 38589 ncRNA 100416505 Gm18133 - - 13|13 C3 cofilin 1, non-muscle pseudogene pseudo 102637377 XR_389655 Gm34205 - - 3 A3|3 predicted gene, 34205 ncRNA 70681 Mm.486560 NM_172405 ENSMUSG00000035234 Abraxas1 3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98|Fam175a - 5|5 E4 BRCA1 A complex subunit protein-coding 102636040 XR_378857 Gm33223 - - 8 A3|8 predicted gene, 33223 ncRNA 100503032 Mark1-ps3 Gm19518 - 17|17 27.95 cM MAP/microtubule affinity-regulating kinase 1, pseudogene 3 pseudo 640703 Gm7308 EG640703 - 6|6 F3 calmodulin 2 pseudogene pseudo 100526516 NR_037211 ENSMUSG00000092952 Mir3059 mir-3059|mmu-mir-3059 - 10 D1|10 53.06 cM microRNA 3059 ncRNA 102642339 XR_874801 Gm38605 - - 14 D2|14 predicted gene, 38605 ncRNA 100038428 Gm10417 - - - predicted gene 10417 protein-coding 474332 Mm.479755 NR_002870 ENSMUSG00000078190 Dnm3os 6030416H16Rik|Hag2|Npn1|P/L01 - 1|1 H2.1 dynamin 3, opposite strand ncRNA 67177 Mm.21873 NM_026014 ENSMUSG00000006585 Cdt1 2610318F11Rik|AW545653|C76791|Ris2 - 8|8 E1 chromatin licensing and DNA replication factor 1 protein-coding 14725 Mm.23847 NM_001081088 ENSMUSG00000027070 Lrp2 AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo - 2 C2|2 40.74 cM low density lipoprotein receptor-related protein 2 protein-coding 623365 Gm6421 EG623365|H3mm7 - 13|13 D2.3 H3 histone, family 3A pseudogene pseudo 102633430 Gm31260 - - Y|Y predicted gene, 31260 pseudo 102637367 XR_382705 Gm34196 - - 13 C3|13 predicted gene, 34196 ncRNA 19256 Mm.8019 NM_008978 ENSMUSG00000021940 Ptpn20 typ - 14|14 B protein tyrosine phosphatase, non-receptor type 20 protein-coding 233545 Mm.387819 NM_172280 ENSMUSG00000035401 Emsy 2210018M11Rik|2310016L09Rik|AU019521|AU019557 - 7|7 E1 EMSY, BRCA2-interacting transcriptional repressor protein-coding 73014 2900054C15Rik - - 17|17 RIKEN cDNA 2900054C15 gene protein-coding 66926 Mm.34199 NM_175113 ENSMUSG00000037376 Trmt6 3300001M20Rik|AU016412|AW492787|CGI-09|mKIAA1153 - 2|2 F2 tRNA methyltransferase 6 protein-coding 20691 Span - - - sperm peptide antigen protein-coding 105242579 Mm.445929 NR_137278 ENSMUSG00000107388 Gm42788 - - 5 G3|5 predicted gene 42788 ncRNA 102642414 XR_866763 Platr3 Gm14074 - 2 F3|2 66.62 cM pluripotency associated transcript 3 ncRNA 111266 Cdc34b Cdc34-ps - 11 D|11 58.92 cM cell division cycle 34B pseudo 74309 Mm.61022 NM_152818 ENSMUSG00000020435 Osbp2 1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1 - 11|11 A1 oxysterol binding protein 2 protein-coding 62419 D14Mit180 - - 14 19.21 cM DNA segment, Chr 14, Massachusetts Institute of Technology 180 unknown 111372 Emv2 Blv-1|Bv-1|Emv-2|Inb-1|N-tropic - - endogenous ecotropic MuLV 2 other 102632415 XR_873592 LOC102632415 - - 13 B3 uncharacterized LOC102632415 ncRNA 78195 Mm.243852 4930528J18Rik - - 10|10 RIKEN cDNA 4930528J18 gene protein-coding 70316 Mm.3014 NM_028177 ENSMUSG00000030869 Ndufab1 2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP - 7|7 F2 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 protein-coding 14633 Mm.273292 NM_001081125 ENSMUSG00000048402 Gli2 - - 1 E2.3|1 52.17 cM GLI-Kruppel family member GLI2 protein-coding 19445 Rb(1.2)5H Rb5H - - Robertsonian translocation, Chr 1 and 2, Harwell 5 other 76743 Mm.136985 NM_029722 ENSMUSG00000019867 Gje1 AEY12|Cx23|D230044M03Rik|Gjf1|Gsfaey12 - 10|10 A2 gap junction protein, epsilon 1 protein-coding 101056144 XM_017320558 LOC101056144 - - 4 A5 protein FAM205A-like protein-coding 102639476 Gm35780 - - 10|10 predicted gene, 35780 ncRNA 102635106 Gm29109 - - Y|Y predicted gene 29109 protein-coding 214111 Mm.156124 NM_144813 ENSMUSG00000034452 Slc24a1 - - 9|9 C solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 protein-coding 404488 Olfr1210-ps1 GA_x6K02T2Q125-50397488-50397086 - - olfactory receptor 1210, pseudogene 1 pseudo 629818 Ighv9-2 EG629818|Gm7007 - 12|12 F1 immunoglobulin heavy variable V9-2 other 102634268 Mm.396160 NR_153843 Kbtbd8os 1700010K10Rik - 6|6 D2 kelch repeat and BTB (POZ) domain containing 8, opposite strand ncRNA 320491 A830054O04Rik - - 10|10 D1 RIKEN cDNA A830054O04 gene unknown 102637458 Gm34261 - - 17|17 predicted gene, 34261 ncRNA 628108 Gm12344 - - 11|11 B5 ATPase, H+ transporting, lysosomal V1 subunit G1 pseudogene pseudo 107741 Ril2 Ril-2 - - radiation-induced leukemia sensitivity 2 protein-coding 70036 Mm.46547 NR_015531 ENSMUSG00000053656 Dancr 2700023E23Rik - 5|5 C3.3 differentiation antagonizing non-protein coding RNA ncRNA 100502938 Gm17491 - - 8|8 11.42 cM predicted gene, 17491 ncRNA 100038734 Mm.387484 NR_033535 ENSMUSG00000095959 Gm10845 - - 14 D3|14 predicted gene 10845 ncRNA 60534 Mm.23122 NM_053081 ENSMUSG00000028453 Fancg AU041407|Xrcc9 - 4|4 A5 Fanconi anemia, complementation group G protein-coding 19139 Mm.287178 NM_021463 ENSMUSG00000031432 Prps1 2310010D17Rik|C76571|C76678|PRS-I|Prps-1 - X F1|X 61.35 cM phosphoribosyl pyrophosphate synthetase 1 protein-coding 100043940 Gm14509 - - X|X A1.1 zinc finger protein 161 pseudogene pseudo 668517 Ighv1-37 Gm16716 - 12|12 F2 immunoglobulin heavy variable 1-37 other 100312486 Vmn1r-ps13 - - 6 B3|6 27.82 cM vomeronasal 1 receptor, pseudogene 13 pseudo 67921 Mm.337238 NM_026454 ENSMUSG00000034343 Ube2f 2510010F15Rik|AI851109 - 1|1 D ubiquitin-conjugating enzyme E2F (putative) protein-coding 52285 Mm.354898 NM_001033129 D6Ertd474e 1700001I24Rik|AU023129 - 6 G3|6 75.5 cM DNA segment, Chr 6, ERATO Doi 474, expressed ncRNA 105247185 XR_881493 Gm42327 - - 4 D3|4 predicted gene, 42327 ncRNA 432466 Mm.333323 NR_002687 ENSMUSG00000046687 Gm5424 EG432466 - 10 B4|10 argininosuccinate synthase pseudogene pseudo 626802 Mm.386029 NM_001243903 ENSMUSG00000078864 Gm14322 - - 2|2 H4 predicted gene 14322 protein-coding 258441 Mm.377504 NM_146449 ENSMUSG00000108827 Olfr1310 MOR245-3 - 2|2 E3 olfactory receptor 1310 protein-coding 102633620 Gm31404 - - 8|8 predicted gene, 31404 ncRNA 102466888 NR_106201 ENSMUSG00000098931 Mir8099-2 Gm27692|mmu-mir-8099-2 - 12 D3|3 microRNA 8099-2 ncRNA 108168572 XM_017318776 Gm46715 - - Y A2|Y predicted gene, 46715 protein-coding 102640232 Gm36349 - - 13|13 predicted gene, 36349 protein-coding 493171 Vmbic2 - - 5 24.07 cM ventral midbrain iron content 2 unknown 654807 Mm.441573 A230005M16Rik - - 2|2 A3 RIKEN cDNA A230005M16 gene unknown 15156 Hc7 Cen7 - - heterochromatin, Chr 7 other 100124433 NR_030607 ENSMUSG00000077928 Mir208b Mirn208b|mir-208b - 14 C3|14 microRNA 208b ncRNA 73516 Mm.48776 NR_015475 ENSMUSG00000097080 1700086O06Rik - - 18|18 B3 RIKEN cDNA 1700086O06 gene ncRNA 666487 Gm8129 EG666487 - 6|6 B3 ribosomal protein L38 pseudogene pseudo 414364 Gm5419 EG414364 - X|X F4 vitamin K epoxide reductase complex, subunit 1-like 1 pseudogene 5 pseudo 50518 Mm.315593 NM_015770 ENSMUSG00000027596 a A|ASIP|ASP|As - 2 H1|2 76.83 cM nonagouti protein-coding 71120 Mm.158571 NR_045509 ENSMUSG00000099751 1700022A22Rik 4933413D07Rik - 15|15 B3.3 RIKEN cDNA 1700022A22 gene ncRNA 100861836 Gm21257 - - Y|Y predicted gene, 21257 protein-coding 53290 524K7T7 - - - DNA segment, 524K7T7 (Roswell Park) unknown 100040972 Mm.18125 NM_001127169 ENSMUSG00000079428 Tceal7 1110018P05Rik - X|X F1 transcription elongation factor A (SII)-like 7 protein-coding 104950 AU021977 - - - expressed sequence AU021977 unknown 100042875 Mm.394547 XR_381097 Gm12059 - - 11|11 A3.2 predicted gene 12059 unknown 102640899 XR_379318 Gm36855 - - 9 A5.1|9 predicted gene, 36855 ncRNA 100499512 NR_037208 ENSMUSG00000093102 Mir3475 mir-3475|mmu-mir-3475 - X F1|X 61.35 cM microRNA 3475 ncRNA 100093627 D430039P05Rik - - - RIKEN cDNA D430039P05 gene protein-coding 102633379 Gm29108 - - Y|Y predicted gene 29108 ncRNA 102634182 Gm31827 - - 12|12 predicted gene, 31827 protein-coding 105246264 XR_876756 Gm41572 - - 17 B1|17 predicted gene, 41572 ncRNA 108168748 XR_001783285 Gm46736 - - 2 B|2 predicted gene, 46736 ncRNA 105463121 Chrf - - - cardiac hypertrophy related factor ncRNA 61176 D18Mit18 - - 18 4.53 cM DNA segment, Chr 18, Massachusetts Institute of Technology 18 unknown 15502 Mm.27897 NM_008298 ENSMUSG00000028410 Dnaja1 HSJ-2|Hsj2|Nedd7 - 4|4 A5 DnaJ heat shock protein family (Hsp40) member A1 protein-coding 620537 Mm.480273 NM_001166723 ENSMUSG00000094011 Vmn1r94 EG620537|Gm6160 - 7|7 A3 vomeronasal 1 receptor 94 protein-coding 100039208 Gm2101 - - X A2|X predicted gene 2101 ncRNA 252868 Mm.76826 NM_145746 ENSMUSG00000032921 Odf4 Oppo1 - 11|11 B3 outer dense fiber of sperm tails 4 protein-coding 105246746 XR_878660 Gm41988 - - 3 A1|3 predicted gene, 41988 ncRNA 100049595 Fmtq14 - - - femur mechanical trait QTL 14 unknown 102631631 Gm28125 - - Y|Y predicted gene 28125 protein-coding 624245 Mm.368256 NM_001122661 ENSMUSG00000091255 Speer4e - - 5|5 A2 spermatogenesis associated glutamate (E)-rich protein 4e protein-coding 668866 Gm9406 EG668866 - 17|17 E4 predicted gene 9406 pseudo 108168210 XR_001781489 Gm46493 - - 14 A1|14 predicted gene, 46493 ncRNA 100302731 NR_028362 ENSMUSG00000065715 Snord7 - - 11|11 C small nucleolar RNA, C/D box 7 snoRNA 320694 Mm.401773 C330003G01Rik - - 2|2 RIKEN cDNA C330003G01 gene protein-coding 100035007 Bywq - - X 41.04 cM body weight QTL unknown 30949 Mm.260527 NM_025304 ENSMUSG00000030763 Lcmt1 AL033290|LCMT-1|Lcmt - 7|7 F3 leucine carboxyl methyltransferase 1 protein-coding 105245372 XR_872478 Gm40838 - - 12 A1.1|12 predicted gene, 40838 ncRNA 100039141 Vmn1r-ps3 Gm11812|Gm2063 - 4|4 A1 vomeronasal 1 receptor, pseudogene 3 pseudo 74883 Mm.109161 XR_384910 4930461C15Rik - - 16|16 C1.2 RIKEN cDNA 4930461C15 gene ncRNA 320132 Mm.445891 NR_040333 ENSMUSG00000087125 A230108P19Rik - - 2|2 A1 RIKEN cDNA A230108P19 gene ncRNA 100416771 Gm18240 - - 12|12 A1.1 predicted gene, 18240 pseudo 100856880 Mm.403691 Gm9870 - - 5 C3.2|5 38.44 cM predicted gene 9870 unknown 238024 Mm.117394 NM_181420 ENSMUSG00000039253 Fn3krp FN3K-RP - 11|11 E2 fructosamine 3 kinase related protein protein-coding 225994 Mm.211595 NM_145497 ENSMUSG00000037847 Nmrk1 AA408380|D630020N23Rik|Nrk1 - 19|19 B nicotinamide riboside kinase 1 protein-coding 102636070 XR_377911 Gm33243 - - 6 D3|6 predicted gene, 33243 ncRNA 102639445 Gm35758 - - Y|Y tRNA methyltransferase 112 homolog pseudo 102642244 XR_868326 Gm38601 - - 5 B1|5 predicted gene, 38601 ncRNA 382245 Mm.277309 NM_001164683 ENSMUSG00000041353 Tmem29 2700081K05Rik|6330540D07Rik|CXorf44-like - X|X F3 transmembrane protein 29 protein-coding 100042165 Mm.482189 NM_001166581 ENSMUSG00000079065 BC005561 - - 5|5 E5 cDNA sequence BC005561 protein-coding 67526 Mm.9852 NM_026217 ENSMUSG00000032905 Atg12 4931423H11Rik|A330058M13Rik|Apg12l|Atg12l - 18|18 C autophagy related 12 protein-coding 100534286 Gm21014 - - 3|3 A1 zinc finger protein 947 pseudogene pseudo 102632325 Gm28356 - - Y|Y predicted gene 28356 pseudo 100039684 Mm.387178 NR_033624 5031434O11Rik AI481280|Gm2370 - 3 C|3 RIKEN cDNA 5031434O11 gene ncRNA 11565 Mm.3440 NM_007421 ENSMUSG00000011148 Adssl1 AI528595|Adss|Adss1 - 12|12 F1 adenylosuccinate synthetase like 1 protein-coding 672553 Gm9567 - - 7 A1|7 predicted gene 9567 unknown 102632617 XR_380491 Gm30644 - - 10 B4|10 predicted gene, 30644 ncRNA 214901 Mm.102540 NM_145409 ENSMUSG00000019214 Chtf18 6030457M03Rik|CTF18|Chl12 - 17|17 A3.3 CTF18, chromosome transmission fidelity factor 18 protein-coding 11941 Mm.321755 NM_009723 ENSMUSG00000030302 Atp2b2 D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri - 6 E3|6 52.85 cM ATPase, Ca++ transporting, plasma membrane 2 protein-coding 100035286 Hdlq51 - - - HDL QTL 51 unknown 100035664 Asdq3 - - - atrial septal defect QTL 3 unknown 114230 Mm.95707 NM_053245 ENSMUSG00000040554 Aipl1 A930007I01Rik - 11|11 B4 aryl hydrocarbon receptor-interacting protein-like 1 protein-coding 77258 9430014K20Rik - - X|X RIKEN cDNA 9430014K20 gene protein-coding 630169 Gm7028 EG630169 - X|X A7.3 paraneoplastic antigen MA3 pseudogene pseudo 73928 Mm.159092 4930408O17Rik - - 12|12 RIKEN cDNA 4930408O17 gene protein-coding 97090 C80914 - - - expressed sequence C80914 unknown 66953 Mm.270676 NM_025866 ENSMUSG00000055612 Cdca7 2310021G01Rik|AU044109|JPO1 - 2|2 C3 cell division cycle associated 7 protein-coding 108167753 XR_001779608 Gm46176 - - 1 H5|1 predicted gene, 46176 ncRNA 100416153 Ifna-ps1 Ifa-ps1 - 4|4 C4 interferon alpha gene, pseudogene 1 pseudo 100040658 Gm2889 - - 18 A1|18 predicted gene 2889 unknown 320391 D930017J03Rik - - 14|14 RIKEN cDNA D930017J03 gene protein-coding 224912 Mm.284447 NM_177638 ENSMUSG00000044279 Crb3 5730439B18|AU015179|AU041752 - 17|17 D crumbs family member 3 protein-coding 102465548 NR_105874 ENSMUSG00000098414 Mir6909 Gm27727|mmu-mir-6909 - 10|10 C1 microRNA 6909 ncRNA 102637234 LOC102637234 - - 16 A2 60S ribosomal protein L30-like pseudo 102634198 XR_383365 Gm31839 - - 14 B|14 predicted gene, 31839 ncRNA 100035619 Aaj4 - - - anxiety in A/J 4 unknown 258846 Mm.223270 NM_146849 ENSMUSG00000075143 Olfr1157 MOR174-1 - 2|2 D olfactory receptor 1157 protein-coding 72212 1700019H22Rik - - 8|8 RIKEN cDNA 1700019H22 gene protein-coding 102640275 XR_880577 Gm36386 - - 5 F|5 predicted gene, 36386 ncRNA 236874 Mm.371699 NM_001126321 ENSMUSG00000079519 Gm14743 - - X|X B predicted gene 14743 protein-coding 212517 Mm.327888 NM_001033247 ENSMUSG00000071550 Cfap44 6330444M21Rik|D16Ertd642e|Gm1750|Wdr52 - 16 B4|16 28.72 cM cilia and flagella associated protein 44 protein-coding 108167409 XR_001778046 Gm45972 - - 7 A2|7 predicted gene, 45972 ncRNA 234072 Mm.132785 NM_172750 ENSMUSG00000031448 Adprhl1 Arh2|D330008N11Rik - 8|8 A1.1 ADP-ribosylhydrolase like 1 protein-coding 97591 C77406 - - - expressed sequence C77406 protein-coding 71078 Mm.50711 NM_027665 ENSMUSG00000043468 Adam30 4933424D07Rik|svph4 - 3|3 F2.2 a disintegrin and metallopeptidase domain 30 protein-coding 22195 Mm.3074 NM_009456 ENSMUSG00000038965 Ube2l3 C79827|UbcM4|Ubce7 - 16 A3|16 10.63 cM ubiquitin-conjugating enzyme E2L 3 protein-coding 107924 Ema - - - electrophoretic mobility and agglutinibility unknown 61715 D5Mit308 - - 5 42.22 cM DNA segment, Chr 5, Massachusetts Institute of Technology 308 unknown 28162 DYzEms16 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 16 unknown 108168080 XR_001780928 Gm46412 - - 13 A5|13 predicted gene, 46412 ncRNA 77613 Mm.334253 NM_001081374 ENSMUSG00000070371 Prss36 C330007D15Rik - 7|7 F3 protease, serine 36 protein-coding 102634232 Gm31865 - - 11 B1.3|11 predicted gene, 31865 pseudo 108189 Rpl7-ps2 - - - ribosomal protein L7, pseudogene 2 pseudo 53893 Mm.251904 NM_016918 ENSMUSG00000025817 Nudt5 - - 2|2 A1 nudix (nucleoside diphosphate linked moiety X)-type motif 5 protein-coding 75439 Mm.27023 NM_029289 ENSMUSG00000027564 Cypt12 1700001F04Rik|AV209098 - 3|3 A1 cysteine-rich perinuclear theca 12 protein-coding 102639532 XR_377964 Gm35824 - - 6 E3|6 predicted gene, 35824 ncRNA 100043247 Mm.478257 NM_001166636 ENSMUSG00000096640 Gm4312 - - 10 D1|10 predicted gene 4312 protein-coding 258959 Mm.377770 NM_146957 ENSMUSG00000062245 Olfr170 MOR273-2 - 16|16 A3 olfactory receptor 170 protein-coding 100049714 NR_029643 ENSMUSG00000078035 Mir293 Mirn293|mir-293|mmu-mir-293 - 7 A1|7 microRNA 293 ncRNA 258983 Mm.223030 NM_146981 ENSMUSG00000042894 Olfr1260 MOR232-2 - 2|2 E1 olfactory receptor 1260 protein-coding 20294 Ccl16-ps HCC-4|LEC|LMC|NCC-4|Scya16-ps - 11 C|11 50.78 cM chemokine (C-C motif) ligand 16, pseudogene pseudo 12234 Mm.119717 NM_009771 ENSMUSG00000025217 Btrc Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP - 19|19 C3 beta-transducin repeat containing protein protein-coding 108168284 XR_001781893 Gm46549 - - 16 B3|16 predicted gene, 46549 ncRNA 99209 Mm.26187 AU021128 - - - expressed sequence AU021128 protein-coding 100043683 Gm4587 - - 7 F3|7 high mobility group box 1 pseudogene pseudo 56562 D6Ott115 - - 6 63.44 cM DNA segment, Chr 6, Animal Research Centre, Ottawa 115 unknown 100036297 Bwtq11 - - - body weight QTL 11 unknown 105247225 XR_881608 Gm42360 - - 4 E2|4 predicted gene, 42360 ncRNA 102633610 XR_874760 Gm31394 - - 14 D1|14 predicted gene, 31394 ncRNA 17527 Mm.271923 NM_008622 ENSMUSG00000107283 Mpv17 Tg.Mpv17 - 5|5 B1 MpV17 mitochondrial inner membrane protein protein-coding 545934 Mm.480277 NM_001166718 ENSMUSG00000115021 Vmn1r173 EG545934|Gm5892|Gm59 - 7|7 A3 vomeronasal 1 receptor 173 protein-coding 328162 Mm.425747 NM_177374 ENSMUSG00000060950 Trmt61a 6720458F09Rik|AI606093|Gcd14|Trm61 - 12|12 F1 tRNA methyltransferase 61A protein-coding 69017 Mm.392047 NM_001102563 ENSMUSG00000045114 Prrt2 1500031I19Rik|AI195361|DSPB3 - 7|7 F3 proline-rich transmembrane protein 2 protein-coding 545649 Mm.474424 NM_001085532 ENSMUSG00000099545 Gm13276 - - 4 C4|4 predicted gene 13276 protein-coding 108168986 XR_001784493 Gm46876 - - 4 E1|4 predicted gene, 46876 ncRNA 70879 4921511E18Rik - - X|X RIKEN cDNA 4921511E18 gene protein-coding 105242797 Mm.458742 XR_869496 Gm38910 Gm43949 - 6 G1|6 predicted gene, 38910 ncRNA 634019 Gm7129 EG634019 - X|X A1.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 258274 Mm.222974 NM_146277 ENSMUSG00000046300 Olfr1412 MOR208-4 - 1|1 D olfactory receptor 1412 protein-coding 108168033 XR_001780722 Gm46381 - - 12 F1|12 predicted gene, 46381 ncRNA 100043140 H2-M10.5-ps1 Gm4256 - 17|17 B1 histocompatibility 2, M region locus 10.5, pseudogene 1 pseudo 102633509 XR_384257 Gm31319 - - 15 E1|15 predicted gene, 31319 ncRNA 100042824 Rpl35a-ps6 Gm10296 - 5|5 F ribosomal protein L35A, pseudogene 6 pseudo 19613 Rb(8.12)5Bnr Rb5Bnr - - Robertsonian translocation, Chr 8 and 12, Universitat Bonn/Rhein 5 other 100418384 Gm19174 - - 9|9 A2 upstream binding transcription factor, RNA polymerase I-like 1 pseudogene pseudo 71604 9130413E14Rik - - 7|7 RIKEN cDNA 9130413E14 gene protein-coding 100502780 Gm19366 - - 7 F3|7 69.9 cM ribosomal protein L39 pseudogene pseudo 667105 Gm8459 EG667105 - 6|6 F1 voltage-dependent anion channel 1 pseudogene pseudo 638720 Gm11990 - - 11|11 A1 general transcription factor II A, 1 pseudogene pseudo 102633461 XR_377651 Gm31279 - - 6 B2.3|6 predicted gene, 31279 ncRNA 74108 Mm.182350 NM_028761 ENSMUSG00000022685 Parn 1200003I18Rik|DAN - 16|16 A1 poly(A)-specific ribonuclease (deadenylation nuclease) protein-coding 100417465 Gm18627 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 622567 Gm6333 EG622567 - 10|10 D3 ribosomal protein L7A pseudogene pseudo 102640612 XR_381975 Gm36635 - - 12 F1|12 predicted gene, 36635 ncRNA 100043300 Mm.27927 NM_001255977 ENSMUSG00000096345 Esp16 Gm4345 - 17 B1|17 exocrine gland secreted peptide 16 protein-coding 16530 Mm.440033 NM_010609 ENSMUSG00000024936 Kcnk7 2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3 - 19|19 A potassium channel, subfamily K, member 7 protein-coding 17356 Mm.59167 NM_010806 ENSMUSG00000068036 Afdn 5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin - 17|17 A1 afadin, adherens junction formation factor protein-coding 332579 Mm.330064 NM_001037747 ENSMUSG00000026928 Card9 Gm782 - 2|2 A3 caspase recruitment domain family, member 9 protein-coding 101056023 Gm29763 - - 7 A3|7 predicted gene, 29763 pseudo 100416780 Gm17138 - - 12|12 D2 pyruvate kinase, muscle pseudogene pseudo 94229 Mm.314497 NM_033552 ENSMUSG00000026904 Slc4a10 NCBE|mKIAA4136 - 2|2 C1.3 solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 protein-coding 209586 Mm.25321 NM_173748 ENSMUSG00000053838 Nudcd3 AI427847|BC024322|mKIAA1068 - 11|11 A1 NudC domain containing 3 protein-coding 18548 Mm.1333 NM_013628 ENSMUSG00000021587 Pcsk1 Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3 - 13 C1|13 40.63 cM proprotein convertase subtilisin/kexin type 1 protein-coding 259012 Mm.377788 NM_147010 ENSMUSG00000047149 Olfr1052 MOR172-1 - 2|2 D olfactory receptor 1052 protein-coding 102640818 XR_384730 Gm36796 - - 16 B1|16 predicted gene, 36796 pseudo 102639012 XR_375066 Gm35433 - - 2 G1|2 predicted gene, 35433 ncRNA 666468 Mm.102230 NM_174875 ENSMUSG00000079418 Atg4a AI627006|AV169859|Apg4a|Atg4al|Autl2 - X|X F1 autophagy related 4A, cysteine peptidase protein-coding 17762 Mm.1287 NM_010838 ENSMUSG00000018411 Mapt AI413597|AW045860|Mtapt|Tau - 11 67.79 cM|11 E1 microtubule-associated protein tau protein-coding 231668 Mm.298603 NM_001033311 ENSMUSG00000066894 Vsig10 - - 5|5 F V-set and immunoglobulin domain containing 10 protein-coding 83796 Mm.21772 NM_031878 ENSMUSG00000078619 Smarcd2 AW322457|Baf60b - 11|11 E1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding 74724 Mm.399254 NR_033573 4930512B01Rik 4930472D12Rik - 12|12 C2 RIKEN cDNA 4930512B01 gene ncRNA 108167767 LOC108167767 - - 10 A3 olfactory receptor 2G6-like pseudo 320946 Mm.87611 A930035D04Rik - - 6|6 B2.3 RIKEN cDNA A930035D04 gene protein-coding 85095 D6Mit1004 D9Mit170 - 6 25.49 cM DNA segment, Chr 6, Massachusetts Institute of Technology 1004 unknown 668040 Gm8941 - - 1 G1|1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 667570 XM_011250761 Gm8708 EG667570 - 7 A3|7 predicted gene 8708 protein-coding 62098 D11Mit79 - - 11 12.35 cM DNA segment, Chr 11, Massachusetts Institute of Technology 79 unknown 105243896 XR_865317 Gm39617 - - 1 B|1 predicted gene, 39617 ncRNA 102635875 Mm.421353 Gm33101 - - 5|5 predicted gene, 33101 ncRNA 54139 Mm.273695 NM_016851 ENSMUSG00000026638 Irf6 AI876454|E230028I05Rik|mirf6 - 1 H6|1 97.6 cM interferon regulatory factor 6 protein-coding 105245916 XR_875148 Gm41296 - - 15 B3.1|15 predicted gene, 41296 ncRNA 269233 Mm.23044 NM_001081161 ENSMUSG00000050530 Fam171a1 9630050M13Rik|AA409679 - 2|2 A1 family with sequence similarity 171, member A1 protein-coding 103951 Rn7s5 Rn7s-5 - - 7S RNA 5 scRNA 105245290 XR_872046 Gm40766 - - 10 D2|10 predicted gene, 40766 ncRNA 110288 Mupm1 Mupm-1 - - major urinary protein modifier 1 protein-coding 71446 Mm.255063 NM_207301 ENSMUSG00000023147 Wrb 5530402J05Rik|C030018G21Rik|Chd5 - 16|16 C4 tryptophan rich basic protein protein-coding 100038531 Mm.158789 D030062O11Rik - - - RIKEN cDNA D030062O11 gene unknown 105063 BB125219 - - - expressed sequence BB125219 unknown 100040795 Gm15223 - - X|X F5 predicted gene 15223 pseudo 111464 L1Md6-1 L1Md-6(Hbb) - - L1 repeat in Hbb haplotype other 66811 Mm.171333 NM_025777 ENSMUSG00000027225 Duoxa2 9030623N16Rik|Nip2 - 2|2 E5 dual oxidase maturation factor 2 protein-coding 108167774 Gm46193 - - 10 D1|10 nuclear transport factor 2 pseudogene pseudo 108168945 XM_017320484 LOC108168945 - - 4 A3 cyclic nucleotide-binding domain-containing protein 1-like protein-coding 73934 Mm.159093 NM_001281537 ENSMUSG00000043569 Cldn34c4 4930412D23Rik - X|X E3 claudin 34C4 protein-coding 666828 Gm8312 EG666828 - X|X A7.1 predicted gene 8312 pseudo 210094 Mm.228087 NM_001164518 ENSMUSG00000013367 Iglon5 A230106M20Rik|Gm1431 - 7|7 B3 IgLON family member 5 protein-coding 381038 Mm.371737 NM_001005767 ENSMUSG00000033918 Parl D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl - 16 A3|16 12.4 cM presenilin associated, rhomboid-like protein-coding 110516 Prdx2-rs1 - - - peroxiredoxin 2, related sequence 1 protein-coding 17858 Mm.14157 NM_013606 ENSMUSG00000023341 Mx2 AI528743|Mx-2 - 16 C4|16 57.51 cM MX dynamin-like GTPase 2 protein-coding 102642755 XR_866914 Gm38630 - - 2 H1|2 predicted gene, 38630 ncRNA 74311 Mm.37581 1700113P08Rik - - 12|12 RIKEN cDNA 1700113P08 gene protein-coding 114875 Mm.50808 NM_054066 ENSMUSG00000030230 Plcz1 1700041H07Rik|PLCzeta - 6|6 G2 phospholipase C, zeta 1 protein-coding 102638520 Gm35064 - - 19|19 predicted gene, 35064 ncRNA 105244115 XR_866125 Gm39787 - - 2 B|2 predicted gene, 39787 ncRNA 102632069 XR_382191 Gm30240 - - 13 A3.3|13 predicted gene, 30240 ncRNA 493029 Bw8q2 - - 4 69.44 cM body weight at 8 weeks QTL 2 unknown 61345 D4Mit110 - - 4 28.57 cM DNA segment, Chr 4, Massachusetts Institute of Technology 110 unknown 102635559 XR_378418 Gm32861 - - 7 E3|7 predicted gene, 32861 ncRNA 667059 Gm8438 EG667059 - 14|14 A1 ribosomal protein 10 pseudogene pseudo 492920 Pcfm3 - - 3 42.66 cM periosteal circumference and femur length 3 unknown 61350 D4Mit137 - - 4 14.88 cM DNA segment, Chr 4, Massachusetts Institute of Technology 137 unknown 105246429 XR_877381 Gm41719 - - 18 C|18 predicted gene, 41719 ncRNA 56438 Mm.29405 NM_019712 ENSMUSG00000022400 Rbx1 1500002P15Rik|AA517855|ROC1 - 15|15 E1 ring-box 1 protein-coding 27919 D16Ium46 - - 16 34.51 cM DNA segment, Chr 16, Indiana University Medical 46 unknown 17186 Matr3-ps2 - - 8 D3|8 matrin 3, pseudogene 2 pseudo 665279 Gm7565 EG665279 - 14|14 A3 ribosomal protein S8 pseudogene pseudo 100126436 Psds1 - - - psoriasis-like skin disease severity 1 unknown 622320 Mm.334029 NM_001039039 ENSMUSG00000044952 Kctd21 EG622320 - 7|7 E1 potassium channel tetramerisation domain containing 21 protein-coding 108167877 LOC108167877 - - 11 A1 ubiquitin-conjugating enzyme E2 L3 pseudogene pseudo 75620 Mm.482129 NM_029366 ENSMUSG00000055553 Kxd1 0610030B01Rik|2810422J05Rik|C78305 - 8|8 B3.3 KxDL motif containing 1 protein-coding 238829 Mm.292319 NM_001013760 ENSMUSG00000071738 Cldn34b3 EG238829|Gm4937 - X A7.3|X claudin 34B3 protein-coding 102634968 XR_376983 LOC102634968 - - 5 C3.1 uncharacterized LOC102634968 ncRNA 226499 Mm.222093 NM_145511 ENSMUSG00000006010 BC003331 1810053E15Rik|Odr4|odr-4 - 1|1 G1 cDNA sequence BC003331 protein-coding 79263 Mm.40624 NM_024468 ENSMUSG00000045409 Trim39 1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp - 17|17 B1 tripartite motif-containing 39 protein-coding 630138 NR_003557 Gm7027 EG630138 - 7 E2|7 ribosomal protein L6 pseudogene pseudo 19538 Rb(4.11)12Rma Rb12Rma - - Robertsonian translocation, Chr 4 and 11, Universita di Roma 12 other 320353 C230086H14Rik - - 2|2 RIKEN cDNA C230086H14 gene protein-coding 114652 Mm.222643 NM_148947 ENSMUSG00000034482 Ly6g5c G5c|NG33 - 17|17 B1 lymphocyte antigen 6 complex, locus G5C protein-coding 16157 Mm.193451 NM_010549 ENSMUSG00000073889 Il11ra1 AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1 - 4 A5|4 21.94 cM interleukin 11 receptor, alpha chain 1 protein-coding 102467275 n-TCgca22 n-Tc22 - 6 B2.3|6 nuclear encoded tRNA cysteine 22 (anticodon GCA) tRNA 12176 Mm.378890 NM_009760 ENSMUSG00000078566 Bnip3 Nip3 - 7|7 F4 BCL2/adenovirus E1B interacting protein 3 protein-coding 100042126 Gm3683 - - 7|7 A1 vomeronasal 2, receptor 31 pseudogene pseudo 432822 Gm5457 EG432822 - 14|14 A1 ubiquinol-cytochrome c reductase binding protein pseudogene pseudo 100503138 Gm19571 - - 16 A1|16 7.37 cM nuclear nucleic acid-binding protein C1D-like pseudo 52635 Mm.273755 NM_028731 ENSMUSG00000021171 Esyt2 2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b - 12 F2|12 62.65 cM extended synaptotagmin-like protein 2 protein-coding 11700 amd - - - autoimmune myocardial disease unknown 100035452 Psrs2 Psd2 - - psoriasis susceptibility 2 unknown 105242422 Gm38693 - - 15|15 predicted gene, 38693 ncRNA 665009 Gm7447 EG665009 - 18|18 E3 phosphoglycerate mutase 1 pseudogene pseudo 20819 Mm.439762 Srst - - 17|17 E3 simple repeat sequence-containing transcript other 105247366 XR_883531 LOC105247366 - - - uncharacterized LOC105247366 ncRNA 338374 Mm.246799 NM_177396 ENSMUSG00000060747 Ifnl3 IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b - 7|7 B1 interferon lambda 3 protein-coding 114250 Many3 QTL-CU5.1 - 5 9.98 cM mandible asymmetry 3 unknown 209334 Mm.215295 NM_177331 ENSMUSG00000051235 Gen1 5830483C08Rik - 12|12 A1.1 GEN1, Holliday junction 5' flap endonuclease protein-coding 99010 Mm.33438 NM_207206 ENSMUSG00000027134 Lpcat4 AI505034|Agpat7|Aytl3|LPEAT2 - 2|2 E3 lysophosphatidylcholine acyltransferase 4 protein-coding 100418331 Gm19143 - - 16|16 A1 heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene pseudo 102637635 XR_379751 Gm34397 - - 9 E3.3|9 predicted gene, 34397 ncRNA 216825 Mm.30602 NM_001004143 ENSMUSG00000042506 Usp22 AI427806 - 11|11 B2 ubiquitin specific peptidase 22 protein-coding 111239 Gabpb1-ps1 - - - GA repeat binding protein, beta 1, pseudogene 1 pseudo 102465576 NR_105919 ENSMUSG00000099260 Mir6954 Gm27770|mmu-mir-6954 - 15|15 D3 microRNA 6954 ncRNA 319564 Mm.188368 NM_176944 C230012O17Rik - - 4|4 A3 RIKEN cDNA C230012O17 gene unknown 384573 Vmn1r-ps85 EG384573|Gm5323 - 7|7 A3 vomeronasal 1 receptor, pseudogene 85 pseudo 104169 Gtl11 - - - gene trap locus 11 unknown 237016 Gm4915 EG237016 - X|X E1 pyruvate kinase, muscle pseudogene pseudo 435811 Mm.359646 NM_001033979 ENSMUSG00000094035 Ldlrad2 - - 4|4 D3 low density lipoprotein receptor A domain containing 2 protein-coding 102638709 XR_385594 Gm35204 - - 17 B3|17 predicted gene, 35204 ncRNA 100312524 Vmn1r-ps94 Gm11286 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 94 pseudo 100035114 Sle16 - - 1 76.73 cM systematic lupus erythematosus susceptibility 16 unknown 108169084 XR_001785023 Gm46929 - - 5 G3|5 predicted gene, 46929 ncRNA 66607 Mm.441056 NM_025658 ENSMUSG00000024678 Ms4a4d 2210417J23Rik - 19|19 A membrane-spanning 4-domains, subfamily A, member 4D protein-coding 100312571 Vmn1r-ps146 - - 17 A3.2|17 vomeronasal 1 receptor, pseudogene 146 pseudo 100043868 Mm.465197 NM_001099330 ENSMUSG00000078752 Scgb1b30 Abpa30|Gm12776 - 7|7 B1 secretoglobin, family 1B, member 30 protein-coding 105245747 XR_874592 Gm41146 - - 14 C1|14 predicted gene, 41146 ncRNA 113844 Insq10 - - 12 50.87 cM insulin QTL 10 unknown 100862369 XM_003688968 ENSMUSG00000095558 Btbd35f9 Gm21681 - X A3.2|X BTB domain containing 35, family member 9 protein-coding 109382 Lbw8 - - - lupus NZB x NZW 8 unknown 19596 Rb(6.16)24Lub Rb24Lub - - Robertsonian translocation, Chr 6 and 16, Lubeck 24 other 11607 Mm.35062 NM_177322 ENSMUSG00000049115 Agtr1a 1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a - 13 A3.2|13 13.19 cM angiotensin II receptor, type 1a protein-coding 77529 C030014C12Rik - - 12|12 RIKEN cDNA C030014C12 gene protein-coding 100036264 Bwnd5wk7 - - - body weight, NMR1 x DBA, 5 week, QTL 7 unknown 217365 Mm.309520 NM_199469 ENSMUSG00000039703 Nploc4 AK129375|Npl4|mKIAA1499 - 11|11 E2 NPL4 homolog, ubiquitin recognition factor protein-coding 78929 Mm.215115 NM_030229 ENSMUSG00000022476 Polr3h 5031409G22Rik|RPC8 - 15|15 E1 polymerase (RNA) III (DNA directed) polypeptide H protein-coding 432745 Mm.159104 NR_046184 ENSMUSG00000113591 4930447K03Rik - - 13|13 A3.3 RIKEN cDNA 4930447K03 gene ncRNA 70415 Mm.46254 NM_133729 ENSMUSG00000031112 Stk26 2610018G03Rik|Mst4 - X|X A5 serine/threonine kinase 26 protein-coding 329641 Mm.51187 NM_177854 ENSMUSG00000056306 Sertm1 6030405A18Rik - 3|3 C serine rich and transmembrane domain containing 1 protein-coding 97089 C80763 - - - expressed sequence C80763 unknown 85114 D18Mit20 - - 18 8.24 cM DNA segment, Chr 18, Massachusetts Institute of Technology 20 unknown 72197 Mm.220824 2610037P13Rik - - 17|17 RIKEN cDNA 2610037P13 gene protein-coding 67336 Mm.378014 NR_027865 ENSMUSG00000100219 1700054K19Rik - - 6|6 E3 RIKEN cDNA 1700054K19 gene ncRNA 50800 Nr1h2-ps - - 9|9 D nuclear receptor subfamily 1, group H, member 2, pseudogene pseudo 28291 D10Jhu70 - - 10 38.57 cM DNA segment, Chr 10, Johns Hopkins University 70 unknown 100035856 W6q10 - - - weight 6 weeks QTL 10 unknown 105244020 XR_865765 Gm39710 - - 1 H4|1 predicted gene, 39710 ncRNA 62054 D5Mit431 - - 5 60.4 cM DNA segment, Chr 5, Massachusetts Institute of Technology 431 unknown 102632810 Gm30787 - - 11|11 predicted gene, 30787 ncRNA 112374 Apmt1 - - 15 22.82 cM accelerator of polyoma-induced mammary tumors 1 unknown 21847 Mm.4292 NM_013692 ENSMUSG00000037465 Klf10 AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF - 15|15 B3.1 Kruppel-like factor 10 protein-coding 386061 Gm5407 EG386061 - 16|16 B5 predicted gene 5407 pseudo 111617 Xmv54 Xmv-54 - - xenotropic murine leukemia virus 54 other 110460 Mm.439711 NM_009338 ENSMUSG00000023832 Acat2 AW742799|Tcp-1x|Tcp1-rs1 - 17 A1|17 8.73 cM acetyl-Coenzyme A acetyltransferase 2 protein-coding 320187 Mm.137318 E230001N04Rik - - 17|17 A3.3 RIKEN cDNA E230001N04 gene ncRNA 27755 D1Sta14 - - - DNA segment, Chr 1, Philip Stanier 14 unknown 68434 Mm.57626 NR_105022 ENSMUSG00000097222 1010001N08Rik Gata6as - 18|18 A1 RIKEN cDNA 1010001N08 gene ncRNA 102636868 XR_868689 Gm33821 - - 5 G2|5 predicted gene, 33821 ncRNA 668485 Gm9197 EG668485 - 7|7 F1 predicted gene 9197 pseudo 432502 Rpl6l EG432502|Gm5428 - 10|10 D1 ribosomal protein L6-like pseudo 102641095 LOC102641095 - - - HLA class I histocompatibility antigen, B-14 alpha chain-like pseudo 102638379 XR_392557 ENSMUSG00000101160 Gm29338 - - Y E|Y predicted gene 29338 ncRNA 320033 A130002D19Rik - - 7|7 RIKEN cDNA A130002D19 gene protein-coding 245968 T(6F3;10B2)40Dn - - - reciprocal translocation, Chr 6, cytogenetic band F3; and Chr 10, cytogenetic band B2, Davisson 40 other 58911 Mm.439876 NM_145937 ENSMUSG00000030101 Sumf1 AA543204|AI463102|AI851573|FGE - 6|6 E1 sulfatase modifying factor 1 protein-coding 53658 D16J2 D0J2 - - DNA segment, Chr 16, Jackson Laboratory 2 unknown 102633962 Gm31659 - - 8|8 predicted gene, 31659 ncRNA 320370 C230036F13Rik - - 5|5 RIKEN cDNA C230036F13 gene protein-coding 102636324 XR_382381 Gm33424 - - 13 B1|13 predicted gene, 33424 ncRNA 76491 Mm.335427 NM_029631 ENSMUSG00000042073 Abhd14b 1810013B01Rik - 9|9 F1 abhydrolase domain containing 14b protein-coding 97243 Mm.11746 NM_001033191 ENSMUSG00000046000 Naa11 Ard1b|Ard2|C80008 - 5|5 E3 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 56705 Mm.148781 NM_019930 ENSMUSG00000038546 Ranbp9 IBAP-1|Ibap1|RanBPM - 13|13 A4 RAN binding protein 9 protein-coding 100036492 Nsila6 - - 8 39.33 cM novelty/stress induced locomotor activation 6 unknown 102466211 NR_105933 ENSMUSG00000098586 Gm27775 Mir6967|Mir6967-1|mmu-mir-6967|mmu-mir-6967-1 - 17|17 A3.3 predicted gene, 27775 ncRNA 114471 Sle8 Bxs2 - - systematic lupus erythematosus susceptibility 8 unknown 108168385 XR_001782472 Gm46628 - - 18 D3|18 predicted gene, 46628 ncRNA 637566 Gm7209 EG637566 - X|X F5 predicted pseudogene 7209 protein-coding 111636 Ms2 MMS2 - - minisatellites detected by probe MMS2 other 56531 Mm.153183 NM_178363 ENSMUSG00000021244 Ylpm1 A930013E17Rik|ZAP|Zap3 - 12|12 D1 YLP motif containing 1 protein-coding 102631887 Mm.122292 NR_153779 ENSMUSG00000114241 Gm30108 - - 14 A3|14 predicted gene, 30108 ncRNA 81799 Mm.280158 NM_030888 ENSMUSG00000058914 C1qtnf3 2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors - 15 A1|15 C1q and tumor necrosis factor related protein 3 protein-coding 626672 Gm6695 EG626672 - 6|6 B3 Casitas B-lineage lymphoma pseudogene pseudo 404376 Olfr302 Olfr302-ps1 - 7|7 olfactory receptor 302 protein-coding 108167445 XR_001778208 LOC108167445 - - 7 D3 uncharacterized LOC108167445 ncRNA 30045 Mm.32550 NM_013888 ENSMUSG00000036764 Dnajc12 Jdp1|mJDP1 - 10|10 B4 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 212508 Mm.296088 NM_199301 ENSMUSG00000039018 Mtg1 Gm169|Gtpbp7 - 7|7 F4 mitochondrial ribosome-associated GTPase 1 protein-coding 102633469 LOC102633469 - - 15 B3.2 SUMO-conjugating enzyme UBC9 pseudogene pseudo 69514 Mm.440092 NM_001254725 ENSMUSG00000074433 Lce3e 2310001H18Rik - 3|3 F1 late cornified envelope 3E protein-coding 100040135 Gm2619 - - 1 C5|1 predicted gene 2619 pseudo 108168904 XR_001784008 Gm43403 - - 3 G3|3 predicted gene 43403 ncRNA 102637329 Mm.412950 XR_879276 Gm26812 Gm34168 - 8 E1|8 predicted gene, 26812 ncRNA 111854 Iapls2-21 - - - intracisternal A particle, lymphocyte specific 2-21 other 17620 Ms41 MMS41 - - minisatellites detected by probe MMS41 other 100040587 Gm2855 - - 14|14 B predicted gene 2855 pseudo 100040454 Gm10212 - - 19|19 A predicted pseudogene 10212 pseudo 67656 Mm.23355 NM_026296 ENSMUSG00000029138 4930548H24Rik AI427865 - 5|5 B1 RIKEN cDNA 4930548H24 gene protein-coding 102633012 Gm30942 - - 11|11 predicted gene, 30942 protein-coding 51902 Mm.477523 NM_178607 ENSMUSG00000048911 Rnf24 2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e - 2 F1|2 63.32 cM ring finger protein 24 protein-coding 64144 Mm.148748 NM_022328 ENSMUSG00000024212 Mllt1 AA407901|BAM11|ENL|LTG19 - 17|17 D myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1 protein-coding 102634502 Mm.460274 XR_869288 2900060L22Rik 100043685|Gm4588 - 6|6 D3 RIKEN cDNA 2900060L22 gene unknown 665376 Mm.469859 NM_001104551 ENSMUSG00000090304 Vmn2r99 EG665376 - 17|17 A3.2 vomeronasal 2, receptor 99 protein-coding 435978 Gm5734 EG435978 - 7|7 B4 MAS-related GPR, member A4 pseudogene pseudo 435337 Mm.441366 NM_001013824 ENSMUSG00000079029 Gm5662 EG435337 - 12 D2|12 predicted gene 5662 protein-coding 98970 Mm.32080 NM_178887 ENSMUSG00000026841 Fibcd1 AI448887 - 2|2 B fibrinogen C domain containing 1 protein-coding 102636728 XR_378355 Gm33720 - - 7 E1|7 predicted gene, 33720 ncRNA 383118 Zfp520-ps Gm1250|Gm1802|Zfp520|Znf74l - 16 A3|16 11.04 cM zinc finger protein 520, pseudogene pseudo 26429 Mm.412217 NM_011959 ENSMUSG00000029012 Orc5 AL033327|MmORC5|Orc5l - 5|5 A3 origin recognition complex, subunit 5 protein-coding 22644 Mm.422969 NM_009543 ENSMUSG00000052656 Rnf103 AW146237|AW212918|Zfp103|kf-1 - 6 C1|6 32.16 cM ring finger protein 103 protein-coding 11538 Mm.201322 NM_009628 ENSMUSG00000051149 Adnp AA589558|mKIAA0784 - 2|2 H3 activity-dependent neuroprotective protein protein-coding 19605 Rb(7.18)7Mpl Rb7Mpl - - Robertsonian translocation, Chr 7 and 18, Montpellier 7 other 100418026 Gm15665 - - 16|16 B3 LIM and senescent cell antigen like domains 2 pseudogene pseudo 73791 Mm.410831 4930404K06Rik - - 12|12 RIKEN cDNA 4930404K06 gene protein-coding 235626 Mm.288949 NM_001081340 ENSMUSG00000044791 Setd2 4921524K10Rik|BC031601|KMT3A - 9|9 F2 SET domain containing 2 protein-coding 69824 Mm.279756 NM_027227 ENSMUSG00000031163 Glod5 2010001H14Rik|AV061890 - X|X A1.1 glyoxalase domain containing 5 protein-coding 245049 Mm.100936 NM_144557 ENSMUSG00000041794 Myrip A230081N12Rik|Slac2-c|Slac2c - 9|9 F4 myosin VIIA and Rab interacting protein protein-coding 723820 NR_029912 ENSMUSG00000065443 Mir196b Mirn196b|mir-196b - 6|6 B3 microRNA 196b ncRNA 76652 Mm.116928 NM_029690 ENSMUSG00000037737 Actrt3 1700119I24Rik|ARP-T3|Arpm1 - 3|3 A3 actin related protein T3 protein-coding 574405 Mm.336093 NM_001025384 ENSMUSG00000071745 DXBay18 - - X|X A7.3 DNA segment, Chr X, Baylor 18 protein-coding 102639381 Gm35708 - - 15|15 predicted gene, 35708 ncRNA 102632108 XR_376716 Gm30267 - - 5 A1|5 predicted gene, 30267 ncRNA 384309 Mm.100647 NM_201373 ENSMUSG00000043279 Trim56 A130009K11Rik|Gm452|RNF109 - 5|5 G2 tripartite motif-containing 56 protein-coding 108593 Iap5rc9 - - - intracisternal A-type particle, U5 region, SINE repeat c-9 other 257680 GA_x5J8B7TTCP5-695-189 - - - olfactory receptor GA_x5J8B7TTCP5-695-189 protein-coding 77390 9430099N05Rik - - - RIKEN cDNA 9430099N05 gene unknown 68857 Mm.96010 NM_026854 ENSMUSG00000024505 Dtwd2 1190002H09Rik|8030470C17Rik|AI414673|BB115449 - 18|18 C DTW domain containing 2 protein-coding 71265 Mm.442035 NR_045163 ENSMUSG00000108709 4933431G14Rik 4930565C19Rik - 6|6 C1 RIKEN cDNA 4933431G14 gene ncRNA 63023 D17Mit192 - - 17 17.98 cM DNA segment, Chr 17, Massachusetts Institute of Technology 192 unknown 108168238 XR_001781634 Gm26766 - - 15 B3.1|15 predicted gene, 26766 ncRNA 629542 Mm.490235 NM_001205268 ENSMUSG00000064129 Gm14781 OTTMUSG000000179761 - X C2|X predicted gene 14781 protein-coding 100036123 Dbm3 - - - diabetes modifier 3 unknown 624438 Gm10819 EG624438 - 19|19 A phosphatidylethanolamine-binding protein pseudogene pseudo 102638067 XR_392012 ENSMUSG00000102031 Gm29426 CH36-92G23.2 - Y B|Y predicted gene 29426 ncRNA 57350 D7Dmr1 - - 7 45.65 cM DNA segment, Chr 7, Diane M Robins 1 unknown 117162 Mm.392393 AA060545 - - - EST AA060545 unknown 61484 D7Mit151 - - - DNA segment, Chr 7, Massachusetts Institute of Technology 151 unknown 21426 Mm.36217 NM_031198 ENSMUSG00000029553 Tfec BB107417|Tcfec|bHLHe34 - 6|6 A2 transcription factor EC protein-coding 545396 Gm5836 EG545396 - 17|17 A3.3 NSA2 ribosome biogenesis homolog pseudogene pseudo 666478 Rps2-ps12 EG666478|Gm8124 - 9|9 A4 ribosomal protein S2, pseudogene 12 pseudo 102632534 XR_879843 Gm30585 - - 11 B1.3|11 predicted gene, 30585 ncRNA 105439 Mm.27548 NM_198014 ENSMUSG00000055717 Slain1 9630044O09Rik|AA675320|AW742596 - 14|14 E2.3 SLAIN motif family, member 1 protein-coding 62470 D19Mit118 - - 19 33.1 cM DNA Segment, Chr 19 Massachusetts Institute of Technology 118 unknown 227998 Mm.67562 NM_177651 ENSMUSG00000053896 4933409G03Rik - - 2|2 C2 RIKEN cDNA 4933409G03 gene protein-coding 76199 Mm.206238 NM_172424 ENSMUSG00000018076 Med13l 2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025 - 5|5 F mediator complex subunit 13-like protein-coding 102635892 Gm12807 - - 4 C7|4 51.43 cM predicted gene 12807 pseudo 105246433 XR_877401 Gm41723 - - 18 D1|18 predicted gene, 41723 ncRNA 230935 Mm.21353 NM_172704 ENSMUSG00000039768 Dnajc11 E030019A03Rik - 4|4 E2 DnaJ heat shock protein family (Hsp40) member C11 protein-coding 105244837 Gm40373 - - 12|12 predicted gene, 40373 ncRNA 100040812 Gm2981 - - 9 D|9 apoptosis inhibitor 5 pseudogene pseudo 665113 Mm.126193 NM_026910 ENSMUSG00000027692 Tnik 1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik - 3|3 A3 TRAF2 and NCK interacting kinase protein-coding 105245380 Gm40846 - - 12 A1.2|12 predicted gene, 40846 pseudo 105245424 XM_017315288 Gm40881 - - 12 A1.2|12 predicted gene, 40881 protein-coding 62819 D13Mit261 - - 13 63.93 cM DNA segment, Chr 13, Massachusetts Institute of Technology 261 unknown 110367 Tcrd-V2 - - - T cell receptor delta, variable 2 other 105244098 XR_866059 Gm39772 - - 2 A3|2 predicted gene, 39772 ncRNA 100040568 Gm2845 - - 6|6 A1 ribosomal protein L13 pseudogene pseudo 110337 Ftl1-rs10 - - - ferritin light chain 1, related sequence 10 protein-coding 52759 D7Wsu190e - - - DNA segment, Chr 7, Wayne State University 190, expressed unknown 668131 Gm8991 EG668131 - 5 A2|5 predicted pseudogene 8991 pseudo 14571 Mm.3711 NM_010274 ENSMUSG00000026827 Gpd2 AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38 - 2 C1.1|2 31.66 cM glycerol phosphate dehydrogenase 2, mitochondrial protein-coding 70809 Mm.439891 NM_027562 ENSMUSG00000000248 Clec2g 4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1 - 6|6 F3 C-type lectin domain family 2, member g protein-coding 105247112 Gm42270 - - 4 A5|4 predicted gene, 42270 pseudo 102632293 XR_376617 Gm30405 - - 4 D2.2|4 predicted gene, 30405 ncRNA 103844 Mm.101581 NM_213729 ENSMUSG00000057054 Inca1 AI842396 - 11|11 B3 inhibitor of CDK, cyclin A1 interacting protein 1 protein-coding 99506 AA517765 - - - expressed sequence AA517765 unknown 102634378 XR_878547 Gm31974 - - 1 E4|1 predicted gene, 31974 ncRNA 100036327 Mlepq1 Mlepfq1 - - M16 leptin QTL 1 unknown 259016 Mm.223403 NM_147014 ENSMUSG00000075195 Olfr1048 MOR187-2 - 2|2 D olfactory receptor 1048 protein-coding 624138 Gm6473 EG624138 - 1 A5|1 cyclin-dependent kinase 10 pseudogene pseudo 432986 Mm.491079 NR_002869 Gm5477 EG432986|Kb16p - 15 F2|15 type II keratin Kb16P pseudo 382421 Mm.245643 NR_033603 ENSMUSG00000111997 Gm5176 EG382421 - 10|10 D1 high mobility group box 2 pseudogene pseudo 102632570 XR_383629 Gm30608 - - 14 D3|14 predicted gene, 30608 ncRNA 66935 Mm.292140 NM_025854 ENSMUSG00000041777 Cir1 1700023B02Rik|2810021A19Rik|Cicr|Cir - 2|2 C3 corepressor interacting with RBPJ, 1 protein-coding 100043742 Gm15403 - - 17 E5|17 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene pseudo 780938 Ighv8-8 Gm9740 - 12|12 F2 immunoglobulin heavy variable 8-8 other 12041 Mm.425495 NM_009739 ENSMUSG00000030802 Bckdk AI327402 - 7|7 F3 branched chain ketoacid dehydrogenase kinase protein-coding 100042009 Gm3623 - - 7|7 A1 vomeronasal 2, receptor 31 pseudogene pseudo 320826 8030448K23Rik - - 13|13 RIKEN cDNA 8030448K23 gene protein-coding 387226 NR_029534 ENSMUSG00000065476 Mir30b Mirn30b|mir-30b|mmu-mir-30b - 15|15 D2 microRNA 30b ncRNA 67938 Mm.261329 NM_023402 ENSMUSG00000034868 Myl12b 1500001M02Rik|C77744|Mylc2b|RLC-B - 17|17 E1.3 myosin, light chain 12B, regulatory protein-coding 13302 Del(2)Usc1 - - - deletion, Chr 2, University of Southern California 1 other 72076 Mm.82766 NM_028086 Mospd4 2010013H21Rik - 18|18 C motile sperm domain containing 4 pseudo 111980 El3 - - 10 39.72 cM epilepsy 3 unknown 105243935 XR_865456 Gm39649 - - 1 C2|1 predicted gene, 39649 ncRNA 102636112 XR_377547 Gm33275 - - 6 B1|6 predicted gene, 33275 ncRNA 217198 Mm.273254 NM_146030 ENSMUSG00000035172 Plekhh3 BC020025 - 11|11 D pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 protein-coding 105246840 Gm42062 - - 19|19 predicted gene, 42062 ncRNA 108205 Ppi-ps3 - - - peptidylprolyl isomerase, pseudogene 3 pseudo 692166 Igkv15-97 - - 6|6 C1 immunoglobulin kappa chain variable 15-97 pseudo 111402 Emv37 Emv-37 - - endogenous ecotropic MuLV 37 other 791346 Mm.407721 Gm10118 - - - predicted gene 10118 unknown 62496 D10Mit140 - - 10 39.93 cM DNA segment, Chr 10, Massachusetts Institute of Technology 140 unknown 72933 2900011G08Rik - - 14|14 D3 RIKEN cDNA 2900011G08 gene protein-coding 100035545 Hscfr - - 17 23.5 cM hematopoietic stem cell frequency regulator unknown 51995 D19Ertd200e - - - DNA segment, Chr 19, ERATO Doi 200, expressed unknown 387173 NR_029565 ENSMUSG00000065397 Mir155 Mirn155|mir-155|mmu-mir-155 - 16|16 C3.3 microRNA 155 ncRNA 22323 Mm.9684 NM_009499 ENSMUSG00000030403 Vasp - - 7|7 A3 vasodilator-stimulated phosphoprotein protein-coding 71199 Mm.417806 4933427I18Rik - - 13|13 RIKEN cDNA 4933427I18 gene protein-coding 258842 Mm.389311 NM_146845 ENSMUSG00000075169 Olfr1098 MOR206-1 - 2|2 D olfactory receptor 1098 protein-coding 100039462 Gm16400 EG623952 - X|X F2 vomeronasal 2, receptor 121 pseudogene pseudo 102638266 XR_381814 Gm34869 - - 12 D3|12 predicted gene, 34869 ncRNA 667115 Gm15534 - - 6|6 C1 sorting nexin 10 pseudogene pseudo 384405 Gm5309 EG384405 - 6 C1|6 nucleosome assembly protein 1-like 1 pseudogene pseudo 102633386 XR_377385 Gm31221 - - 6 A3.3|6 predicted gene, 31221 ncRNA 100640 Mm.393082 AI429363 - - - expressed sequence AI429363 unknown 12329 can - - - cartilage anomaly unknown 545886 Mm.449716 NM_001177652 ENSMUSG00000108106 Gm5886 EG545886|smarp - 6|6 G1 predicted gene 5886 protein-coding 404449 Olfr942-ps1 GA_x5J8B7W60AJ-480395-479394 - 9|9 A5.1 olfactory receptor 942, pseudogene 1 pseudo 100502789 Gm17552 - - 19|19 3.87 cM predicted gene, 17552 ncRNA 114055 Axtlm - - - anxiety-locomotor activity unknown 27395 Mm.182927 NM_025300 ENSMUSG00000033845 Mrpl15 HSPC145|MRP-L7|Rpml7 - 1|1 A1 mitochondrial ribosomal protein L15 protein-coding 102640500 XM_006514352 ENSMUSG00000095593 LOC102640500 - - 10 C1 keratin-associated protein 10-8-like protein-coding 53412 Mm.24724 NM_016854 ENSMUSG00000067279 Ppp1r3c PTG|Ppp1r5 - 19|19 C2 protein phosphatase 1, regulatory (inhibitor) subunit 3C protein-coding 77353 9430095M17Rik - - 4|4 RIKEN cDNA 9430095M17 gene protein-coding 223917 Mm.162744 NM_146063 ENSMUSG00000061397 Krt79 BC031593 - 15|15 F2 keratin 79 protein-coding 59032 Mm.427307 NM_021529 ENSMUSG00000021022 Ppp2r3c 4930511A21Rik|5730412A08Rik|G4-1|G5pr - 12|12 C1 protein phosphatase 2, regulatory subunit B'', gamma protein-coding 100035845 W6q1 - - - weight 6 weeks QTL 1 unknown 100036029 Gf2 - - - gonadal fat pad weight 2 unknown 100039305 Mup-ps19 Gm12556 - 4|4 B3 major urinary protein, pseudogene 19 pseudo 16469 Mm.87052 NM_008415 ENSMUSG00000046380 Jrk - - 15 D3|15 34.26 cM jerky protein-coding 110902 Mm.57350 NM_144803 ENSMUSG00000022041 Chrna2 Acra-2|Acra2|BC011490 - 14 D1|14 34.36 cM cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal) protein-coding 102638976 XR_376049 Gm35408 - - 3 G1|3 predicted gene, 35408 ncRNA 108168811 XR_001783532 Gm14228 - - 2 H2|2 80.98 cM predicted gene 14228 ncRNA 320588 Mm.487548 C330006P03Rik - - 13|13 RIKEN cDNA C330006P03 gene protein-coding 69236 Mm.440848 2610034E01Rik - - 10|10 RIKEN cDNA 2610034E01 gene protein-coding 100039008 Mm.335875 NM_001122647 ENSMUSG00000078680 Mup10 2610016E04Rik|Mup8 - 4|4 B3 major urinary protein 10 protein-coding 213827 Mm.371682 NM_145985 ENSMUSG00000032096 Arcn1 4632432M07Rik|nur17 - 9|9 A5.2 archain 1 protein-coding 102635504 XR_881078 Gm32823 - - 4 A1|4 predicted gene, 32823 ncRNA 101055706 Gm29714 - - 5 E5|5 predicted gene, 29714 pseudo 93737 Mm.24678 NM_053117 ENSMUSG00000056214 Pard6g 2410049N21Rik|Par6a - 18|18 E3 par-6 family cell polarity regulator gamma protein-coding 73474 Mm.443320 NR_027900 ENSMUSG00000090101 Snhg9 1700072N11Rik - 17|17 A3.3 small nucleolar RNA host gene 9 ncRNA 72694 2810036E18Rik - - 2|2 RIKEN cDNA 2810036E18 gene protein-coding 414106 Mm.383494 XR_866683 4930417H01Rik - - 2 E5|2 RIKEN cDNA 4930417H01 gene ncRNA 52464 D16Ertd88e - - 16 34.53 cM DNA segment, Chr 16, ERATO Doi 88, expressed unknown 105243056 Gm39088 - - 7|7 predicted gene, 39088 ncRNA 19041 Mm.266875 NM_008909 ENSMUSG00000039457 Ppl AW553870 - 16 A1|16 2.5 cM periplakin protein-coding 100042101 Gm3668 - - 5|5 A3 predicted gene 3668 pseudo 117206 l9Rl5 pl-5 - - lethal, Chr 9, Russell 5 protein-coding 105246692 XR_878480 Gm29345 - - 1 E2.3|1 predicted gene 29345 ncRNA 619331 Mm.361832 NM_001033820 ENSMUSG00000034071 Zfp551 9630004E07Rik|Znf551 - 7|7 A1 zinc fingr protein 551 protein-coding 102466767 NR_105893 ENSMUSG00000098415 Mir6928 Gm27728|mmu-mir-6928 - 11|11 D microRNA 6928 ncRNA 26564 Mm.342774 NM_013846 ENSMUSG00000021464 Ror2 Ntrkr2 - 13 B1|13 27.68 cM receptor tyrosine kinase-like orphan receptor 2 protein-coding 100504097 Gm13813 - - 2 E1|2 53.37 cM alpha-enolase-like pseudo 319167 Mm.263165 NM_178186 ENSMUSG00000069301 Hist1h2ag - - 13|13 A3.1 histone cluster 1, H2ag protein-coding 102639141 XR_389799 Gm35524 - - 5 B1|5 predicted gene, 35524 ncRNA 70685 3830408D07Rik - - 8|8 RIKEN cDNA 3830408D07 gene protein-coding 100616095 Mm.391938 NR_038186 ENSMUSG00000096956 Snhg18 0610007N19Rik|Snord123 - 15 B3.1|15 13.02 cM small nucleolar RNA host gene 18 ncRNA 71655 Mm.196269 4930518F22Rik - - 8|8 RIKEN cDNA 4930518F22 gene unknown 71138 Mm.158581 NM_001162901 ENSMUSG00000079580 Tmem217 4933413N12Rik|EG622644 - 17|17 A3.3 transmembrane protein 217 protein-coding 111510 Pmv6 Pmv-6 - - polytropic murine leukemia virus 6 other 433470 Mm.36783 NM_001004174 ENSMUSG00000033213 AA467197 Nmes1|mir-147 - 2|2 E5 expressed sequence AA467197 protein-coding 100124672 Trbv12-1 Gm16753|Tcrb|Tcrb-V5.2 - 6 19.19 cM|6 B1 T cell receptor beta, variable 12-1 other 74453 Mm.182293 NM_028948 ENSMUSG00000035394 Cfap53 4933415I03Rik|Ccdc11 - 18|18 E2 cilia and flagella associated protein 53 protein-coding 74842 Mm.159332 4833419G08Rik - - 18|18 E3 RIKEN cDNA 4833419G08 gene protein-coding 54419 Mm.86421 NM_018777 ENSMUSG00000023906 Cldn6 AL024037 - 17|17 A3.3 claudin 6 protein-coding 108242 Dppa5-ps4 Esg1-ps4|esg-1 - - developmental pluripotency associated 5, pseudogene 4 pseudo 61442 D6Mit117 - - 6 19.76 cM DNA segment, Chr 6, Massachusetts Institute of Technology 117 unknown 15139 Mm.2168 NM_010406 ENSMUSG00000026874 Hc C5|C5a|He|Hfib2 - 2 B|2 23.22 cM hemolytic complement protein-coding 100416234 Gm17989 - - 7|7 E3 ribosomal protein 10 pseudogene pseudo 100042013 XM_001476818 Gm20898 - - Y|Y B predicted gene, 20898 protein-coding 66353 Mm.46405 NM_025506 ENSMUSG00000028139 Riiad1 2310007A19Rik|Ncrna00166 - 3 F2.1|3 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 protein-coding 432731 Mm.390557 NM_001013786 ENSMUSG00000022228 Zscan26 BC068174|Zfp187|Znf187 - 13|13 A3.1 zinc finger and SCAN domain containing 26 protein-coding 667064 Gm12904 - - 4|4 D2.2 eukaryotic translation initiation factor 2C, 2 pseudogene pseudo 105242580 XR_868732 Gm38753 - - 5 G3|5 predicted gene, 38753 ncRNA 111596 Pmv54 Pmv-54 - - polytropic murine leukemia virus 54 other 625298 Rps13-ps1 EG625298|Gm6573 - 8|8 C3 ribosomal protein S13, pseudogene 1 pseudo 110311 Lsd - - - lymphocyte stimulating determinant unknown 105246170 XR_876281 Gm41504 - - 16 C4|16 predicted gene, 41504 ncRNA 105245607 XR_873864 Gm41038 - - 13 D1|13 predicted gene, 41038 ncRNA 102638285 Mm.393945 XR_001783246 Gm13415 - - 2 A3|2 16.44 cM predicted gene 13415 ncRNA 96990 Mm.441760 C79798 - - - expressed sequence C79798 unknown 102636017 Gm33208 - - 17|17 predicted gene, 33208 ncRNA 26369 Mm.195831 NM_007593 ENSMUSG00000050996 Cetn1 caltractin - 18|18 A1 centrin 1 protein-coding 257915 Mm.377300 NM_001011758 ENSMUSG00000075209 Olfr1016 MOR213-9 - 2|2 D olfactory receptor 1016 protein-coding 100503268 Gm19622 - - 1|1 72.98 cM predicted gene, 19622 ncRNA 108281175 LOC108281175 - - - N-4 enhancer downstream of Sox2 biological-region 97003 C80719 - - - expressed sequence C80719 unknown 105245881 XR_875021 Gm41264 - - 15 A1|15 predicted gene, 41264 ncRNA 111151 Odc-rs16 - - - ornithine decarboxylase, related sequence 16 pseudo 385748 Gm5404 EG385748 - 16|16 A1 predicted gene 5404 pseudo 61217 D1Mit206 - - 1 80.33 cM DNA segment, Chr 1, Massachusetts Institute of Technology 206 unknown 15296 Hmgb1-rs16 Hmg1-rs16 - 9|9 F1 high mobility group box 1, related sequence 16 pseudo 78925 Mm.451912 NM_175283 ENSMUSG00000021594 Srd5a1 0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1 - 13 B3-C1|13 35.55 cM steroid 5 alpha-reductase 1 protein-coding 227736 Mm.441499 NM_025619 ENSMUSG00000038987 Cfap157 1700019L03Rik - 2|2 B cilia and flagella associated protein 157 protein-coding 664829 Mm.489202 NM_001136476 ENSMUSG00000095063 Slx EG664958|Xmr - X|X A2 Sycp3 like X-linked protein-coding 81600 Mm.46418 NM_023186 ENSMUSG00000062778 Chia1 2200003E03Rik|AMCase|Chia|YNL - 3|3 F2.2 chitinase, acidic 1 protein-coding 105244325 Gm39958 - - 2|2 predicted gene, 39958 ncRNA 12804 Mm.425178 NM_016673 ENSMUSG00000028444 Cntfr Cntfralpha - 4 A5|4 21.81 cM ciliary neurotrophic factor receptor protein-coding 61155 D11Mit78 - - 11 10.44 cM DNA segment, Chr 11, Massachusetts Institute of Technology 78 unknown 102632806 XR_869565 Gm30784 Gm44244 - 6 G2|6 predicted gene, 30784 ncRNA 404396 Olfr499-ps1 GA_x5J8B7W5Q32-585040-584392 - 7|7 E3 olfactory receptor 499, pseudogene 1 pseudo 19487 Rb(13.16)1Mpl Rb1Mpl - - Robertsonian translocation, Chr 13 and 16, Montpellier 1 other 109279855 LOC109279855 Mm30 - - VISTA enhancer mm30 biological-region 245509 Mm.297700 NM_001085511 ENSMUSG00000079513 4932429P05Rik - - X|X C1 RIKEN cDNA 4932429P05 gene protein-coding 70369 Mm.44239 NM_027404 ENSMUSG00000049792 Bag5 1600025G07Rik|4930405J06Rik|Bag-5 - 12|12 F1 BCL2-associated athanogene 5 protein-coding 100093642 Trnai-aau - - - transfer RNA isoleucine (anticodon AAU) tRNA 258768 Mm.377683 NM_146772 ENSMUSG00000068808 Olfr1189 MOR237-2 - 2|2 D olfactory receptor 1189 protein-coding 51891 D2Ertd468e - - 2 44.79 cM DNA segment, Chr 2, ERATO Doi 468, expressed unknown 105242396 Gm38680 - - 14|14 predicted gene, 38680 ncRNA 170650 Trm1 - - - tRNA methionine initiator 1 tRNA 666875 Gm8341 EG666875 - 15 A2|15 3-phosphoglycerate dehydrogenase pseudogene pseudo 102634896 XR_376649 Gm32371 - - 4 D2.2|4 predicted gene, 32371 ncRNA 735271 NR_030490 ENSMUSG00000076144 Mir709 Mirn709|mir-709|mmu-mir-709 - 8 C2|8 microRNA 709 ncRNA 102634889 XR_380829 Gm32365 - - 10 D2|10 predicted gene, 32365 ncRNA 100036275 Arigm3 - - - anti-RBC IgM antibodies 3 unknown 434274 LOC434274 - - 8|8 A1.1 uncharacterized LOC434274 unknown 53005 O12T7 - - - DNA segment, O12T7 unknown 102632966 XR_375244 Gm30908 - - 2 H3|2 predicted gene, 30908 ncRNA 674169 Gm9613 - - 17 B1|17 predicted gene 9613 ncRNA 105243905 Mm.84307 XR_865349 Gm37020 - - 1 B|1 predicted gene, 37020 ncRNA 113840 Insq6 - - 1 38.01 cM insulin QTL 6 unknown 14812 Mm.436649 NM_008171 ENSMUSG00000030209 Grin2b AW490526|GluN2B|NR2B|Nmdar2b - 6 G1|6 66.38 cM glutamate receptor, ionotropic, NMDA2B (epsilon 2) protein-coding 108167568 XM_017313050 Gm46063 - - 8 B1.3|8 predicted gene, 46063 protein-coding 61648 D8Mit204 - - - DNA segment, Chr 8, Massachusetts Institute of Technology 204 unknown 101055931 Gm29745 - - 5 A1|5 predicted gene, 29745 pseudo 105245654 XM_011244719 Gm41080 Anxa2rp - 13 D2.3|13 annexin 2 receptor-like pseudogene pseudo 102633089 LOC102633089 - - 13 D2.2 SET domain-containing protein 9 pseudogene pseudo 626903 Rpl31-ps21 EG626903|Gm6718 - 5|5 A3 ribosomal protein L31, pseudogene 21 pseudo 102632707 XR_001780650 Gm30706 - - 12 D1|12 predicted gene, 30706 ncRNA 69662 Mm.260159 NM_001033630 ENSMUSG00000050705 2310061I04Rik - - 17|17 B1 RIKEN cDNA 2310061I04 gene protein-coding 50778 Mm.103701 NM_015811 ENSMUSG00000026358 Rgs1 BL34 - 1 F|1 62.56 cM regulator of G-protein signaling 1 protein-coding 102637740 XR_378880 ENSMUSG00000109773 Gm34474 Gm45466 - 8 A4|8 predicted gene, 34474 ncRNA 15528 Mm.215667 NM_008303 ENSMUSG00000073676 Hspe1 10kDa|Hsp10|mt-cpn10 - 1|1 C1.2 heat shock protein 1 (chaperonin 10) protein-coding 102633253 Gm21791 - - Y|Y predicted gene, 21791 protein-coding 76972 Mm.309167 NR_027059 ENSMUSG00000086859 Snhg20 2810008D09Rik - 11|11 E2 small nucleolar RNA host gene 20 ncRNA 100310813 Mm.482271 NR_029412 ENSMUSG00000065097 Snora16a - - 4 D2.3|4 small nucleolar RNA, H/ACA box 16A snoRNA 104644204 KF876689 - - - expressed sequence KF876689 ncRNA 666579 Gm8174 EG666579 - 15 A1|15 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 50523 Mm.347899 NM_015771 ENSMUSG00000021959 Lats2 4932411G09Rik|AV277261|AW228608 - 14|14 C3 large tumor suppressor 2 protein-coding 102465560 NR_105894 ENSMUSG00000098600 Mir6929 Gm27298|mmu-mir-6929 - 11|11 D microRNA 6929 ncRNA 102634455 XR_376397 Gm32035 - - 4 C5|4 predicted gene, 32035 ncRNA 100217452 NR_028547 ENSMUSG00000080610 Snord110 MBII-55 - 2 F1|2 small nucleolar RNA, C/D box 110 snoRNA 77338 9430052A13Rik - - 14|14 RIKEN cDNA 9430052A13 gene protein-coding 83770 Mm.190612 NM_031873 ENSMUSG00000028738 Tas1r2 Gpr71|T1r2|TR2 - 4 D3|4 70.82 cM taste receptor, type 1, member 2 protein-coding 17834 Muervc1 - - - murine endogenous retroviral-like element-1 other 100036098 Marq4 - - - methamphetamine response QTL 4 unknown 108021850 LOC108021850 E70|SOM - - Sox9 enhancer SOM biological-region 19215 Mm.1008 NM_008963 ENSMUSG00000015090 Ptgds 21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3 - 2 A3|2 17.28 cM prostaglandin D2 synthase (brain) protein-coding 319272 Mm.411763 NR_040616 ENSMUSG00000112095 A130077B15Rik - - 10|10 D2 RIKEN cDNA A130077B15 gene ncRNA 105246348 Gm41648 - - 17|17 predicted gene, 41648 ncRNA 382486 Gm12015 - - 11|11 A3.1 aldo-keto reductase family 1, member B3 pseudogene pseudo 399609 Mm.351922 NR_102388 C130046K22Rik - - 11 E1|11 RIKEN cDNA C130046K22 gene ncRNA 100417915 Gm14538 - - X|X A1.3 ubiquitin-like modifier activating enzyme 3 pseudogene pseudo 18617 Mm.423066 NM_008818 ENSMUSG00000095180 Rhox5 AA409564|Pem - X A3.3|X reproductive homeobox 5 protein-coding 105246466 XR_877480 Gm41752 - - 18 E1|18 predicted gene, 41752 ncRNA 105244102 Mm.209437 XR_866069 LOC105244102 - - 2 A3 uncharacterized LOC105244102 ncRNA 21092 T(15E;16B1)60Dn T(15;16)60Dn|T60Dn - - reciprocal translocation, Chr 15, cytogenetic band E; and Chr 16, cytogenetic band B1, Davisson 60 other 76983 Mm.216511 NM_029825 ENSMUSG00000020952 Scfd1 3110021P21Rik|RA410|STXBP1L2 - 12|12 B3 Sec1 family domain containing 1 protein-coding 102635677 XR_876979 Gm32954 - - 17 E3|17 predicted gene, 32954 ncRNA 20209 Mm.200941 NM_011314 ENSMUSG00000057465 Saa2 AW111173|Saa-2|Saa1 - 7 B3|7 30.56 cM serum amyloid A 2 protein-coding 74006 Mm.218820 NM_152816 ENSMUSG00000022789 Dnm1l 6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python - 16|16 A2 dynamin 1-like protein-coding 102632577 XR_384973 Gm30615 - - 16 C3.1|16 predicted gene, 30615 ncRNA 21528 Tcra-V2.4 - - - T cell receptor alpha, variable 2.4 other 100101429 Cia37 - - - collagen induced arthritis QTL 37 unknown 100503949 Mm.484023 NM_001242944 ENSMUSG00000078896 Zfp965 668009|Gm8923 - 2 H4|2 98.44 cM zinc finger protein 965 protein-coding 52775 D4Bwg96e - - - DNA segment, Chr 4, Brigham & Women's Genetics 96 expressed unknown 53814 Mm.440422 NM_016901 ENSMUSG00000028141 Oaz3 AZ3|Az-3|Oaz-t - 3|3 F2.1 ornithine decarboxylase antizyme 3 protein-coding 492880 Blmpf1 - - 17 17.25 cM bleomycin-induced pulmonary fibrosis 1 unknown 108168424 XR_001782712 Gm46663 - - 19 D3|19 predicted gene, 46663 ncRNA 545291 Mm.442200 NM_001081257 ENSMUSG00000074852 Hpse2 Gm968|Hpa2 - 19|19 C3 heparanase 2 protein-coding 109113 Mm.313364 NM_144873 ENSMUSG00000024817 Uhrf2 2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf - 19|19 C1 ubiquitin-like, containing PHD and RING finger domains 2 protein-coding 66072 Mm.180063 NM_025333 ENSMUSG00000024668 Sdhaf2 0610038F07Rik|AA407634|AW049997 - 19|19 A succinate dehydrogenase complex assembly factor 2 protein-coding 13842 Mm.1390 NM_007939 ENSMUSG00000028661 Epha8 AW047546|Eek|Hek3|mKIAA1459 - 4|4 D3 Eph receptor A8 protein-coding 69675 Mm.251774 NM_181395 ENSMUSG00000020674 Pxdn 2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230 - 12|12 A2 peroxidasin protein-coding 102633741 XR_384884 Gm31494 - - 16 B5|16 predicted gene, 31494 ncRNA 110309 Krt6 K6|Krt-2.6|Krt2-6 - 15 F2|15 keratin 6 other 70844 4921508M14Rik - - 12|12 A3 RIKEN cDNA 4921508M14 gene unknown 19693 Mm.46360 NM_009043 ENSMUSG00000023140 Reg2 PSP|PTP|REG-2 - 6|6 C3 regenerating islet-derived 2 protein-coding 216858 Mm.239498 NM_153143 ENSMUSG00000046731 Kctd11 AF465352|Ren - 11|11 B3 potassium channel tetramerisation domain containing 11 protein-coding 380694 Mm.247595 NM_001045530 ENSMUSG00000044707 Ccnjl Gm877 - 11|11 B1.1 cyclin J-like protein-coding 108167723 XR_001779388 Gm46155 - - 1 E2.3|1 predicted gene, 46155 ncRNA 238568 Mm.249698 NM_001076790 ENSMUSG00000047889 Serpinb6d Gm11390|SPI3D - 13 A3.3|13 13.94 cM serine (or cysteine) peptidase inhibitor, clade B, member 6d protein-coding 105246721 XR_878589 Gm41964 - - 1 F|1 predicted gene, 41964 ncRNA 15977 Mm.1245 NM_010510 ENSMUSG00000048806 Ifnb1 IFN-beta|IFNB|Ifb - 4 C4|4 41.91 cM interferon beta 1, fibroblast protein-coding 102635324 XR_882264 Gm32695 - - 7 D3|7 predicted gene, 32695 ncRNA 18099 Mm.9001 NM_008702 ENSMUSG00000017376 Nlk AI194375 - 11|11 B5 nemo like kinase protein-coding 74352 Mm.251083 NM_023750 ENSMUSG00000046185 Zfp84 2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69 - 7 B1|7 17.25 cM zinc finger protein 84 protein-coding 69178 Mm.273379 NM_024225 ENSMUSG00000027423 Snx5 0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e - 2 G1|2 70.98 cM sorting nexin 5 protein-coding 27731 D17Tu49a - - - DNA segment, Chr 17, Tubigen 49, A unknown 110490 Tcra-V4.1 - - - T cell receptor alpha, variable 4.1 other 666749 Gm11623 - - 11|11 E1 predicted gene 11623 protein-coding 61417 D5Mit191 - - 5 84.59 cM DNA segment, Chr 5, Massachusetts Institute of Technology 191 unknown 102641463 XM_017316274 Gm17175 - - 14 C1|14 26.58 cM predicted gene 17175 protein-coding 110078 Mm.222584 NM_153781 ENSMUSG00000033059 Pygb - - 2 G3|2 74.74 cM brain glycogen phosphorylase protein-coding 102634006 XR_373869 Gm31696 - - 1 H6|1 predicted gene, 31696 ncRNA 102632783 XR_390830 Gm30767 - - 4 D3|4 predicted gene, 30767 ncRNA 102639516 XR_866504 Gm35813 - - 2 C3|2 predicted gene, 35813 ncRNA 78183 Mm.297372 NR_151735 4930522P08Rik - - 8|8 B3.3 RIKEN cDNA 4930522P08 gene ncRNA 16169 Mm.200196 NM_008358 ENSMUSG00000023206 Il15ra AA690181|IL-15RA - 2 A1|2 8.97 cM interleukin 15 receptor, alpha chain protein-coding 102636635 XR_379994 Gm33645 - - 9 F3|9 predicted gene, 33645 ncRNA 78944 T(4;6)77H T77H - - reciprocal translocation, Chr 4 and 6, Harwell 77 other 76603 1700047N06Rik - - 1|1 RIKEN cDNA 1700047N06 gene protein-coding 100417987 Gm18936 - - 19|19 C3 predicted gene, 18936 pseudo 622304 Mm.362829 XR_387393 ENSMUSG00000100658 F730311O21Rik EG622304 - 1|1 E4 RIKEN cDNA F730311O21 gene unknown 27811 304D23R - - - DNA segment, 304D23R (Research Genetics) unknown 20400 Mm.441197 NM_011364 ENSMUSG00000005696 Sh2d1a Gm686|SAP - X|X A4 SH2 domain containing 1A protein-coding 667254 Gm8540 EG667254 - 10|10 A3 predicted gene 8540 pseudo 320528 Mm.241454 NM_177184 ENSMUSG00000035284 Vps13c AI552542|AV026040|C230055H22Rik|W51662|chorein - 9|9 C vacuolar protein sorting 13C protein-coding 102639261 XR_381599 Gm35614 - - 12 C1|12 predicted gene, 35614 ncRNA 102465636 NR_106018 ENSMUSG00000099210 Mir7051 Gm27685|mmu-mir-7051 - 7|7 B3 microRNA 7051 ncRNA 208715 Mm.61526 NM_145942 ENSMUSG00000093930 Hmgcs1 B130032C06Rik - 13 D2.3|13 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 protein-coding 112274 Mvwf - - - modifier of von Willebrand factor unknown 628100 Mm.390365 NM_001099688 ENSMUSG00000070388 Fbxo39 1700010H23Rik - 11|11 B4 F-box protein 39 protein-coding 77879 6030446M11Rik - - 5|5 RIKEN cDNA 6030446M11 gene protein-coding 102638041 Gm12146 - - 11|11 25.68 cM predicted gene 12146 ncRNA 100862225 Gm21573 - - Y|Y predicted gene, 21573 protein-coding 108169197 LOC108169197 - - 6 F1 40S ribosomal protein S2 pseudogene pseudo 225875 Mm.329675 NM_153388 ENSMUSG00000045045 Lrfn4 BC023156|Salm3 - 19|19 A leucine rich repeat and fibronectin type III domain containing 4 protein-coding 100217413 NR_028517 Scarna10 MBI-52 - 6 F2|6 small Cajal body-specific RNA 10 ncRNA 108168241 XR_001781694 Gm46516 - - 15 D1|15 predicted gene, 46516 ncRNA 102634460 XR_873390 Gm32038 - - 13 A5|13 predicted gene, 32038 ncRNA 12789 Mm.5097 NM_007724 ENSMUSG00000005864 Cnga2 CNG2|Cnca|Cncg4|OCNC1 - X|X A7.3 cyclic nucleotide gated channel alpha 2 protein-coding 102636687 Gm33688 - - 6|6 predicted gene, 33688 ncRNA 100042517 Gm3881 - - 11 B2|11 predicted gene 3881 unknown 108167614 XM_017313254 Gm46084 - - 1 A3|1 predicted gene, 46084 protein-coding 268373 Mm.5246 NM_008907 ENSMUSG00000071866 Ppia 2700098C05|Cphn|CyP-18|CypA - 11 A1|11 3.97 cM peptidylprolyl isomerase A protein-coding 234353 Mm.32525 NM_027626 ENSMUSG00000030465 Psd3 4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D - 8|8 B3.2-B3.3 pleckstrin and Sec7 domain containing 3 protein-coding 100502683 Gm2581 100040066 - 15|15 A1 ribosomal protein S29 pseudogene pseudo 218977 Mm.240543 NM_144553 ENSMUSG00000037544 Dlgap5 C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008 - 14 C1|14 24.6 cM DLG associated protein 5 protein-coding 110924 Tmevp3 NeST - - Theiler's murine encephalomyelitis virus persistence 3 protein-coding 105243659 XR_878055 Gm39494 - - X A1.1|X predicted gene, 39494 ncRNA 101056211 Gm29799 - - 7 F4|7 predicted gene, 29799 pseudo 70165 Mm.416891 2310044K18Rik - - 7|7 RIKEN cDNA 2310044K18 gene protein-coding 100505397 XM_011249615 Gm20385 - - 5 E5|5 50.68 cM predicted gene, 20385 protein-coding 21290 T(In1;5)44H T44H - - reciprocal translocation, inverted Chr 1 and Chr 5, Harwell 44 other 102635403 Mm.108003 XR_376128 Gm32754 Gm43783|Gm44309 - 3 H1|3 predicted gene, 32754 ncRNA 110120395 LOC110120395 - - - VISTA enhancer mm734 biological-region 102638820 XR_390916 Gm35295 - - 4 E1|4 predicted gene, 35295 ncRNA 100036420 Pgia21 - - - proteoglycan induced arthritis 21 unknown 52735 D13Uth8e - - - DNA segment, Chr 13, University of Utah, expressed 8 unknown 110120427 LOC110120427 - - - VISTA enhancer mm1546 biological-region 13380 Mm.214717 NM_010051 ENSMUSG00000024868 Dkk1 mdkk-1 - 19|19 C1 dickkopf WNT signaling pathway inhibitor 1 protein-coding 102637320 XR_376159 Gm34162 - - 3 H2|3 predicted gene, 34162 ncRNA 732537 Gt(pU21)50Imeg Ayu21-50|GtAyu21-50 - - gene trap 50, Institute of Molecular Embryology and Genetics unknown 67282 Mm.208465 NM_026070 ENSMUSG00000020056 Washc3 2900091E11Rik|5730495F03Rik|Ccdc53 - 10|10 C1 WASH complex subunit 3 protein-coding 102467394 n-TWcca7 n-Tw7 - 11 B3|11 nuclear encoded tRNA trytophan 7 (anticodon CCA) tRNA 100861911 Gm21321 - - 10 A1|10 predicted gene, 21321 pseudo 432945 Mm.321981 NR_046185 ENSMUSG00000056332 Gm16294 EG432945 - 15|15 B3.1 predicted gene 16294 ncRNA 102638812 Mm.84334 Gm35288 - - 9|9 predicted gene, 35288 ncRNA 111008 Cbl-ps1 Cbl-1 - - Casitas B-lineage lymphoma, pseudogene 1 pseudo 233670 Mm.296765 NM_206897 ENSMUSG00000036647 Olfr6 M50|MOR103-16 - 7 E3|7 56.1 cM olfactory receptor 6 protein-coding 18369 Mm.377109 NM_013620 ENSMUSG00000061626 Olfr68 3'[b]2|3'beta2|MOR22-3 - 7|7 E3 olfactory receptor 68 protein-coding 68134 Mm.271160 NM_026573 ENSMUSG00000036572 Upf3b 5730594O13Rik|AI317193|AW541158|RENT3B|UPF3X - X|X A3.3 UPF3 regulator of nonsense transcripts homolog B (yeast) protein-coding 100126224 Mm.441989 NR_045902 ENSMUSG00000086514 Gm11747 - - 11|11 E2 predicted gene 11747 ncRNA 619318 Mm.371258 NM_001033814 ENSMUSG00000074248 4930432M17Rik - - 3|3 G1 RIKEN cDNA 4930432M17 gene protein-coding 102635261 XR_874568 LOC102635261 - - 14 C1 uncharacterized LOC102635261 ncRNA 102634247 Gm31878 - - 10|10 predicted gene, 31878 ncRNA 98741 Mm.156081 NM_001033195 ENSMUSG00000092083 Kcnb2 9630047L19Rik|BB130875|Kv2.2 - 1 A3|1 4.5 cM potassium voltage gated channel, Shab-related subfamily, member 2 protein-coding 102635951 XR_379621 Gm27204 - - 9 D|9 predicted gene 27204 ncRNA 664848 Gm12644 - - 4|4 C5 within bgcn homolog pseudogene pseudo 105245005 XR_870739 Gm40520 - - 9 A5.3|9 predicted gene, 40520 ncRNA 76051 Mm.38851 NM_172672 ENSMUSG00000062646 Ganc 5830445O15Rik|9330160A12|mFLJ00088 - 2|2 E5 glucosidase, alpha; neutral C protein-coding 58539 D13Die38 - - 13 52.9 cM DNA segment, Chr 13, Dietrich 38 unknown 16643 Mm.391515 NM_010654 ENSMUSG00000030165 Klrd1 CD94 - 6 F3|6 63.42 cM killer cell lectin-like receptor, subfamily D, member 1 protein-coding 23879 Mm.41930 NM_011814 ENSMUSG00000018765 Fxr2 Fxr2h - 11 B3|11 42.86 cM fragile X mental retardation, autosomal homolog 2 protein-coding 13394 Mm.439766 NM_007867 ENSMUSG00000020871 Dlx4 Dlx-4|Dlx7 - 11 D|11 59.01 cM distal-less homeobox 4 protein-coding 27389 Mm.390674 NM_013849 ENSMUSG00000021768 Dusp13 DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6 - 14|14 A3 dual specificity phosphatase 13 protein-coding 102636009 XR_378422 Gm33204 - - 7 F1|7 predicted gene, 33204 ncRNA 667512 Mm.482061 NM_001167147 ENSMUSG00000094748 Gm8677 EG667512|Vmn1r153 - 7|7 A3 predicted gene 8677 protein-coding 105245441 Gm40895 - - 12|12 predicted gene, 40895 ncRNA 18370 Mm.377110 NM_013621 ENSMUSG00000058662 Olfr69 3'[b]3|3'beta3|MOR22-2 - 7|7 E3 olfactory receptor 69 protein-coding 15463 Mm.392569 NM_010472 ENSMUSG00000026159 Agfg1 AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip - 1|1 C5 ArfGAP with FG repeats 1 protein-coding 108168197 XR_001781421 Gm46481 - - 14 E2.3|14 predicted gene, 46481 ncRNA 71157 XR_869208 4933423K11Rik - - 6|6 C3 RIKEN cDNA 4933423K11 gene ncRNA 243469 Mm.333124 Igk kappa - 6 C1|6 30.89 cM immunoglobulin kappa chain complex protein-coding 102631616 XR_375366 ENSMUSG00000086114 Gm14642 - - 2 H3|2 96.37 cM predicted gene 14642 ncRNA 669420 Mm.355327 Gm10129 - - 13|13 predicted gene 10129 protein-coding 104252 Mm.491103 NM_026772 ENSMUSG00000045664 Cdc42ep2 1110008C05Rik|Borg1|Cep2|D19Bwg1013e - 19 A|19 4.34 cM CDC42 effector protein (Rho GTPase binding) 2 protein-coding 112311 Hcs4 - - 2 93.22 cM hepatocarcinogenesis susceptibility 4 unknown 102641048 LOC102641048 - - - rho GTPase-activating protein 20-like pseudo 100036208 Cia14 mCia11 - - collagen induced arthritis QTL 14 unknown 104058 Panc2 Pan-2|Pan2 - - pancreas protein 2 protein-coding 654824 Mm.334517 NM_001039562 ENSMUSG00000050914 Ankrd37 - - 8|8 B1.1 ankyrin repeat domain 37 protein-coding 620986 Gm6195 EG620986 - 1|1 A2 predicted pseudogene 6195 pseudo 109280034 LOC109280034 Mm264 - - VISTA enhancer mm264 biological-region 68311 Mm.306880 NM_026671 ENSMUSG00000022595 Lypd2 0610005K03Rik|Lypdc2|VLL - 15|15 D3 Ly6/Plaur domain containing 2 protein-coding 70239 Mm.274120 NM_148928 ENSMUSG00000026816 Gtf3c5 2700084A09Rik|TFIIIC63|TFiiiC2-63 - 2|2 A3 general transcription factor IIIC, polypeptide 5 protein-coding 16833 Mm.16563 NM_013580 ENSMUSG00000030851 Ldhc LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4 - 7 B3|7 30.6 cM lactate dehydrogenase C protein-coding 105244054 XR_865850 Gm39736 - - 1 H6|1 predicted gene, 39736 ncRNA 61406 D5Mit170 - - 5 12.36 cM DNA segment, Chr 5, Massachusetts Institute of Technology 170 unknown 100316680 NR_035436 ENSMUSG00000084523 Mir1903 Mirn1903|mmu-mir-1903 - 8 E2|8 75.78 cM microRNA 1903 ncRNA 100417685 Gm12093 - - 11|11 A3.3 apurinic/apyrimidinic endonuclease 2 pseudogene pseudo 268319 Mm.131825 NM_001033363 ENSMUSG00000074862 BC025920 - - 10|10 C1 zinc finger protein pseudogene pseudo 100039830 XM_017315322 Gm2446 - - 12 C1|12 predicted gene 2446 protein-coding 102640452 XR_384121 Gm36509 - - 15 D1|15 predicted gene, 36509 ncRNA 70546 Mm.34326 NM_178395 ENSMUSG00000039470 Zdhhc2 5730415P04Rik|6430583A19Rik|DHHC-2 - 8|8 A4 zinc finger, DHHC domain containing 2 protein-coding 52003 Mm.24907 DXErtd11e - - X 8.11 cM DNA segment, Chr X, ERATO Doi 11, expressed unknown 102637435 Gm34243 - - 13|13 predicted gene, 34243 protein-coding 103578 AA517471 - - - expressed sequence AA517471 unknown 105244643 Gm40219 - - 4|4 predicted gene, 40219 ncRNA 244421 Mm.324032 NM_001081150 ENSMUSG00000039633 Lonrf1 - - 8|8 A4 LON peptidase N-terminal domain and ring finger 1 protein-coding 109781 Ly7 Ly-7 - - lymphocyte antigen 7 protein-coding 102638861 Gm35323 - - 3 E3|3 predicted gene, 35323 pseudo 102631883 XR_387378 Gm30104 - - 1 E4|1 predicted gene, 30104 ncRNA 105247205 XR_881562 Gm42344 - - 4 E1|4 predicted gene, 42344 ncRNA 102632597 XR_378118 Gm28523 - - 6 G2|6 predicted gene 28523 ncRNA 76044 Mm.491196 NM_133762 ENSMUSG00000042029 Ncapg2 5830426I05Rik|Luzp5|Mtb|mCAP-G2 - 12|12 F2 non-SMC condensin II complex, subunit G2 protein-coding 66816 Mm.32314 NM_025780 ENSMUSG00000020137 Thap2 2900040O07Rik|9030625G08Rik|AI450385|AI649097 - 10|10 D2 THAP domain containing, apoptosis associated protein 2 protein-coding 102639044 XR_389514 LOC102639044 - - 5 F nucleophosmin pseudogene pseudo 442837 Mm.337149 NM_001002792 ENSMUSG00000051616 C230029F24Rik - - 1|1 C1.1 RIKEN cDNA C230029F24 gene ncRNA 104017 Em - - - Emory cataract unknown 235028 Mm.297660 NM_146221 ENSMUSG00000059475 Zfp426 2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237 - 9 A3|9 7.55 cM zinc finger protein 426 protein-coding 217012 Mm.295205 NM_178680 ENSMUSG00000018845 Unc45b AA445617|Cmya4|D230041A13Rik|Unc45 - 11|11 C unc-45 myosin chaperone B protein-coding 100043008 Gm4165 - - 13|13 C1 predicted gene 4165 pseudo 17139 Mm.328528 NM_020017 ENSMUSG00000094196 Magea3 Mage-a3 - X F3|X 72.38 cM melanoma antigen, family A, 3 protein-coding 619294 Mm.423961 NM_001033799 ENSMUSG00000073085 Cldn34b4 4930428D18Rik - X|X A7.3 claudin 34B4 protein-coding 61652 D7Mit288 - - 7 81.11 cM DNA segment, Chr 7, Massachusetts Institute of Technology 288 unknown 100418062 Gm18976 - - 14|14 C2 MRT4, mRNA turnover 4, homolog pseudogene pseudo 671215 Gm9522 - - 15 B3.1|15 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 77651 C430039J01Rik - - 7|7 RIKEN cDNA C430039J01 gene protein-coding 100035185 Bw21 - - - body weight QTL 21 unknown 258575 Mm.377574 NM_146582 ENSMUSG00000075197 Olfr1046 MOR194-1 - 2|2 D olfactory receptor 1046 protein-coding 18377 Mm.93335 NM_019409 ENSMUSG00000049612 Omg - - 11 B5|11 46.79 cM oligodendrocyte myelin glycoprotein protein-coding 100503200 Gm17249 - - 10|10 41.58 cM predicted gene, 17249 ncRNA 111770 Iapls1-3 - - - intracisternal A particle, lymphocyte specific 1-3 other 628898 Gm6929 EG628898 - 7|7 A1 predicted gene 6929 pseudo 242408 Mm.440423 NM_175517 ENSMUSG00000043633 Fam221b 4930412F15Rik - 4|4 A5 family with sequence similarity 221, member B protein-coding 105244942 XR_870173 Gm40464 - - 8 A1.3|8 predicted gene, 40464 ncRNA 100504056 Mm.416837 NR_152255 Gm20036 - - 12 E|12 51.31 cM predicted gene, 20036 ncRNA 102637206 XR_391562 Gm34079 - - 7 C|7 predicted gene, 34079 ncRNA 16319 Mm.29755 NM_016692 ENSMUSG00000024660 Incenp 2700067E22Rik|AU019509|C130081E20|C77457 - 19 A|19 6.1 cM inner centromere protein protein-coding 13626 Mm.380914 NM_021876 ENSMUSG00000030619 Eed l(7)5Rn|l7Rn5|lusk - 7 D3|7 embryonic ectoderm development protein-coding 218543 Mm.458176 NM_172592 ENSMUSG00000032621 Srek1 8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12 - 13|13 D1 splicing regulatory glutamine/lysine-rich protein 1 protein-coding 66293 Mm.432051 NM_025472 ENSMUSG00000020812 1810032O08Rik - - 11|11 E2 RIKEN cDNA 1810032O08 gene ncRNA 16050 Mm.436601 Igh-V10 - - - immunoglobulin heavy chain (V10 family) other 107493 Tel8q - - - telomeric sequence, Chr 8, q arm protein-coding 381686 Mm.332837 NM_001013774 ENSMUSG00000038770 Kpna7 AW146299|Gm1055 - 5|5 G2 karyopherin alpha 7 (importin alpha 8) protein-coding 77801 A930015P04Rik - - 13|13 RIKEN cDNA A930015P04 gene protein-coding 107377 Mm.376405 AW492981 - - - expressed sequence AW492981 protein-coding 102411 AA517566 - - - expressed sequence AA517566 unknown 77795 Mm.372402 A930010G16Rik C430048F02Rik - 2|2 RIKEN cDNA A930010G16 gene protein-coding 102639846 Gm28980 - - 1 C2|1 predicted gene 28980 pseudo 102634668 NR_151615 Gm32200 - - 1 H6|1 predicted gene, 32200 ncRNA 102636664 XR_384917 LOC102636664 - - 16 C1.3 uncharacterized LOC102636664 ncRNA 78617 Mm.40413 NM_030137 ENSMUSG00000047363 Cstad 9530039B02Rik - 2|2 B CSA-conditional, T cell activation-dependent protein protein-coding 100041014 Mm.359525 NR_038297 Gm20857 - - Y|Y A2 Sycp3 like Y-linked pseudogene pseudo 108168792 XR_001783469 Gm46763 - - 2 F1|2 predicted gene, 46763 ncRNA 102632386 Catspere2 Gm30473 - 1|1 catsper channel auxiliary subunit epsilon 2 protein-coding 100041325 Gm3272 - - 8 C5|8 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 111756 Iapls3-4 - - - intracisternal A particle, lymphocyte specific 3-4 other 111532 Xmv26 Xmv-26 - - xenotropic murine leukemia virus 26 other 21225 T(5;8)3Rk T3Rk - - reciprocal translocation, Chr 5 and 8, Roderick 3 other 100042607 Trav4n-4 Gm10902 - 14|14 C2 T cell receptor alpha variable 4N-4 other 110397 Evi18 - - - ecotropic viral integration site 18 protein-coding 76624 Mm.426384 NR_130171 ENSMUSG00000091906 1700099I09Rik - - 13|13 D1 RIKEN cDNA 1700099I09 gene ncRNA 102631945 XR_376094 Gm30147 - - 3 G3|3 predicted gene, 30147 ncRNA 628004 Mm.462511 NM_001177363 Gm10561 EG628004 - 1|1 C1.2 predicted gene 10561 unknown 105245220 XR_871848 Gm40704 - - 10 C1|10 predicted gene, 40704 ncRNA 100862175 XM_003945446 Gm10698 Gm19904|Gm21540 - 9 A4|9 predicted gene 10698 protein-coding 102638243 Gm34852 - - 8|8 predicted gene, 34852 ncRNA 61521 D8Mit156 - - 8 76.09 cM DNA segment, Chr 8, Massachusetts Institute of Technology 156 unknown 668539 Gm9229 EG668539 - 12|12 A1.2 predicted gene 9229 protein-coding 108388 Xmv3 Xmv-3 - - xenotropic murine leukemia virus 3 other 102637476 Gm21757 - - Y|Y predicted gene, 21757 protein-coding 628516 Igkv4-73 EG628516|Gm6889|ah4 - 6|6 C1 immunoglobulin kappa variable 4-73 other 384494 Gm5318 EG384494 - 6|6 F3 predicted gene 5318 pseudo 51825 D9Sut2e - - - DNA segment, Chr 9, Sutcliffe 1 expressed unknown 100038978 Rps12-ps17 EG665555|Gm16424 - X|X E3 ribosomal protein S12, pseudogene 17 pseudo 492908 Mnic2 - - - macronutrient intake, carbohydrate 2 unknown 110964 Lamb1-2 Lamb-1.13|Lamb-1ps|Lamb1-ps - - laminin B1 subunit 2 pseudo 105245512 XR_873481 Gm40959 - - 13 B1|13 predicted gene, 40959 ncRNA 667896 Gm8868 EG667896 - 17|17 B1 predicted gene 8868 pseudo 103929 Ng - - - nackig unknown 102636270 XR_381562 Gm33384 - - 12 B1|12 predicted gene, 33384 ncRNA 245616 Mm.246625 NM_177749 ENSMUSG00000031424 Kir3dl1 Kirl1|Kirl2|Krl1 - X F1|X 58.77 cM killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1 protein-coding 53416 Mm.198414 NM_016866 ENSMUSG00000027030 Stk39 AW227544|AW556857|DCHT|RF005|Rnl5|SPAK - 2|2 C1.3 serine/threonine kinase 39 protein-coding 76444 Mm.348022 NM_029613 ENSMUSG00000045109 Krtap4-7 2310037K05Rik|KAP4.7|KRTAP4.7 - 11|11 D keratin associated protein 4-7 protein-coding 620913 Mm.452174 NM_001045540 ENSMUSG00000048852 Gm12185 Irgb2b1 - 11 B1.2|11 predicted gene 12185 protein-coding 70515 5730407I07Rik - - 15|15 RIKEN cDNA 5730407I07 gene protein-coding 100035083 Egq10 - - - early growth QTL 10 unknown 243978 Mm.333873 NM_001034868 ENSMUSG00000074109 Mrgprx2 G370024M05Rik|MrgB10|Mrgprb10 - 7|7 B4 MAS-related GPR, member X2 protein-coding 105244419 Mm.73241 Gm12299 - - 11|11 40.59 cM predicted gene 12299 ncRNA 359907 DXMgc70 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 70 unknown 100504544 Gm13417 - - 2|2 16.53 cM predicted gene 13417 ncRNA 622744 XM_006535298 ENSMUSG00000072821 Gm6351 EG622744 - 5|5 E3 predicted gene 6351 protein-coding 109687 Ir2 Ir-2 - - immune response 2 unknown 109378 Lbw3 - - 5 80.16 cM lupus NZB x NZW 3 unknown 61378 D4Mit225 - - 4 79.77 cM DNA segment, Chr 4, Massachusetts Institute of Technology 225 unknown 246787 Mm.38870 NM_133254 ENSMUSG00000030781 Slc5a2 Sglt2 - 7|7 F3 solute carrier family 5 (sodium/glucose cotransporter), member 2 protein-coding 13664 Mm.262037 NM_010120 ENSMUSG00000057561 Eif1a C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C - 18|18 C eukaryotic translation initiation factor 1A protein-coding 12946 Mm.301652 NM_013499 ENSMUSG00000016481 Cr1l Crry|Mcp|mCRY - 1 H6|1 98.43 cM complement component (3b/4b) receptor 1-like protein-coding 654436 C79947 - - 12|12 expressed sequence C79947 unknown 100036184 Pbwg2 - - - postnatal body weight growth 2 unknown 621510 Mm.480271 NM_001166725 ENSMUSG00000094879 Vmn1r129 EG621510|Gm6237 - 7|7 A3 vomeronasal 1 receptor 129 protein-coding 109519 Alcp24 - - 19 29.06 cM alcohol preference locus 24, female specific unknown 66147 Mm.21187 NM_025383 ENSMUSG00000028923 Necap2 1110005F07Rik|AA409105|C78898|NECAP-2 - 4|4 D3 NECAP endocytosis associated 2 protein-coding 492870 Aod1a - - - autoimmune ovarian dysgenesis 1a unknown 100502794 Gm19376 - - 10|10 39.72 cM 28S ribosomal protein S36, mitochondrial-like pseudo 638381 Gm7237 - - 19|19 C1 predicted gene 7237 pseudo 13609 Mm.982 NM_007901 ENSMUSG00000045092 S1pr1 AI849002|Edg1|Lpb1|S1p|S1p1 - 3|3 G1 sphingosine-1-phosphate receptor 1 protein-coding 104462 Mm.458575 AU014795 - - - expressed sequence AU014795 protein-coding 99041 Mm.373081 NR_040330 AI646519 Aspax1|Peat - 2 G2|2 expressed sequence AI646519 ncRNA 100035196 Pbwg20 - - - postnatal body weight growth 20 unknown 29810 Mm.84073 NM_013863 ENSMUSG00000030847 Bag3 AA407278|Bis|mg638 - 7|7 F3 BCL2-associated athanogene 3 protein-coding 62734 D18Mit185 - - 18 42.78 cM DNA segment, Chr 18, Massachusetts Institute of Technology 185 unknown 75284 Mm.32826 NM_029236 ENSMUSG00000037525 Bcdin3d 4930556P03Rik|AV138748 - 15|15 F1 BCDIN3 domain containing protein-coding 628040 Gm6829 EG628040 - X|X A1.1 predicted pseudogene 6829 pseudo 93883 Mm.196701 NM_053137 ENSMUSG00000043458 Pcdhb12 Pcdh3|Pcdhb5F|PcdhbL - 18 19.49 cM|18 B3 protocadherin beta 12 protein-coding 100416925 Gm12413 - - 4|4 C4 phosphoglycerate mutase 1 pseudogene pseudo 71182 Mm.195603 NR_033592 ENSMUSG00000106572 4933417G07Rik - - 3|3 C SEC13 homolog pseudogene pseudo 110322 Lts1 - - - lung tumor susceptibility locus 1 protein-coding 61598 D9Mit272 - - 9 48.4 cM DNA segment, Chr 9, Massachusetts Institute of Technology 272 unknown 100312519 Vmn1r-ps151 - - 18 A1|18 1.98 cM vomeronasal 1 receptor, pseudogene 151 pseudo 83679 Mm.129840 NM_031401 ENSMUSG00000038170 Pde4dip 4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454 - 3 F2.2|3 42.28 cM phosphodiesterase 4D interacting protein (myomegalin) protein-coding 102633186 XR_373279 Gm31076 - - 1 A5|1 predicted gene, 31076 ncRNA 18514 Mm.43358 NM_008783 ENSMUSG00000052534 Pbx1 2310056B04Rik|D230003C07Rik|Pbx-1 - 1 H2.3|1 75.95 cM pre B cell leukemia homeobox 1 protein-coding 100038554 Mm.367723 NR_033546 ENSMUSG00000074469 Gm15348 - - 8 A1.1|8 predicted gene 15348 ncRNA 56188 Mm.1491 NM_019503 ENSMUSG00000036570 Fxyd1 0610012C17Rik|1110006M24Rik|Plm|Pml - 7|7 B1 FXYD domain-containing ion transport regulator 1 protein-coding 55946 Mm.376269 NM_018829 ENSMUSG00000021824 Ap3m1 1200013D09Rik|C78982|R75378 - 14 A3|14 11.58 cM adaptor-related protein complex 3, mu 1 subunit protein-coding 102636347 XR_381108 Gm33440 - - 11 A3.2|11 predicted gene, 33440 ncRNA 102636316 XR_381239 Gm33418 - - 12 A1.1|12 predicted gene, 33418 ncRNA 654449 Mm.439698 NM_008461 ENSMUSG00000072721 Klra14-ps EG654449|Gm15858|Klra14|Klra29|Klra31|Ly49N - 6 63.44 cM|6 F3 killer cell lectin-like receptor subfamily A, member 14, pseudogene pseudo 97073 C79452 - - - expressed sequence C79452 protein-coding 101497 Mm.235700 NM_138752 ENSMUSG00000037552 Plekhg2 AI194308|Clg|Cslg - 7 A3|7 16.71 cM pleckstrin homology domain containing, family G (with RhoGef domain) member 2 protein-coding 78252 Mm.31626 NM_030069 ENSMUSG00000032028 Nxpe2 4432416J03Rik|AI323362|Fam55b - 9|9 A5.3 neurexophilin and PC-esterase domain family, member 2 protein-coding 74122 Mm.38801 NM_028766 ENSMUSG00000030095 Tmem43 1200015A22Rik|LUMA - 6|6 D1 transmembrane protein 43 protein-coding 52386 D1Ertd702e - - 1 11.49 cM DNA segment, Chr 1, ERATO Doi 702, expressed unknown 100039148 Mm.120467 NR_131154 ENSMUSG00000087388 Gm12128 - - 11|11 A5 predicted gene 12128 ncRNA 110883 Nova2-rs3 - - - neuro-oncological ventral antigen 2, related sequence 3 protein-coding 104522 Mm.436987 NR_045305 ENSMUSG00000091523 AU040972 AU040954 - 11 B5|11 expressed sequence AU040972 ncRNA 100416622 Gm13482 - - 2|2 B R3H domain containing 2 pseudogene pseudo 622832 Gm6363 EG622832 - 16 C4|16 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 109776 Act1 Act-1 - - actin related gene 1 protein-coding 108168443 LOC108168443 - - X C1 60S ribosomal protein L21 pseudogene pseudo 101963 AA589503 - - - expressed sequence AA589503 unknown 102635382 Gm32739 - - 16|16 predicted gene, 32739 ncRNA 216377 Mm.208936 NR_110482 ENSMUSG00000112854 Gm38403 C230029M16 - 10|10 D2 predicted gene, 38403 ncRNA 108167654 Gm46114 - - 9 B|9 kinesin-like protein KIF23 pseudo 777657 Ighd1-1 Gm16947 - 12|12 F1 immunoglobulin heavy diversity 1-1 other 112090 Bh4p - - 3 21.67 cM bar holding four paws unknown 27505 573K1S - - - DNA segment, 573K1S unknown 100035123 Adip14 - - - adiposity 14 unknown 233080 Mm.291167 NM_001033316 ENSMUSG00000019429 Ffar3 Gm478|Gpr41 - 7|7 B1 free fatty acid receptor 3 protein-coding 319818 Mm.295233 NR_030692 ENSMUSG00000089809 A930011G23Rik - - 5|5 E3-E4 RIKEN cDNA A930011G23 gene ncRNA 54720 Mm.265744 NM_019466 ENSMUSG00000022951 Rcan1 Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1 - 16 C4|16 53.6 cM regulator of calcineurin 1 protein-coding 85074 D7Mit37 - - 7 54.85 cM DNA segment, Chr 7, Massachusetts Institute of Technology 37 unknown 20348 Mm.5071 NM_013657 ENSMUSG00000028780 Sema3c 1110036B02Rik|SemE|Semae - 5|5 A3 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C protein-coding 12858 Mm.273403 NM_007747 ENSMUSG00000000088 Cox5a AA959768|CcOX - 9|9 B cytochrome c oxidase subunit Va protein-coding 105246662 XR_878396 Gm41917 - - 1 D|1 predicted gene, 41917 ncRNA 108168767 XR_001783330 Gm46746 - - 2 C2|2 predicted gene, 46746 ncRNA 105244135 Gm39802 - - 2|2 predicted gene, 39802 ncRNA 102638957 Mm.334428 XR_378747 ENSMUSG00000109748 Gm35392 - - 8 A1.1|8 predicted gene, 35392 ncRNA 102639916 Gm36115 - - 1|1 predicted gene, 36115 ncRNA 100039781 Mm.18796 NM_027511 ENSMUSG00000071001 Hrct1 3830408D24Rik - 4|4 B1 histidine rich carboxyl terminus 1 protein-coding 71389 Mm.122738 NM_173368 ENSMUSG00000057133 Chd6 5430439G14Rik|6330406J24Rik|CHD-6 - 2|2 H2 chromodomain helicase DNA binding protein 6 protein-coding 102638205 XR_378446 Gm34822 - - 7 F1|7 predicted gene, 34822 ncRNA 110168 Mm.37405 NM_182806 ENSMUSG00000050350 Gpr18 - - 14 E5|14 65.86 cM G protein-coupled receptor 18 protein-coding 670994 Gm9512 - - 13 A1|13 predicted gene 9512 pseudo 67848 Mm.281601 NM_026409 ENSMUSG00000029389 Ddx55 2810021H22Rik|mKIAA1595 - 5|5 F DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 protein-coding 62347 D1Mit406 - - - DNA segment, Chr 1, Massachusetts Institute of Technology 406 unknown 109279933 LOC109279933 Mm261 - - VISTA enhancer mm261 biological-region 214973 Gm11349 - - 13|13 A3.1 peptidylprolyl isomerase D (cyclophilin D) pseudogene pseudo 100502828 Gm19401 - - 7|7 29.54 cM predicted gene, 19401 ncRNA 269610 Mm.40192 NM_029216 ENSMUSG00000005045 Chd5 4930532L22Rik|AW060752|B230399N07Rik|CHD-5 - 4|4 E2 chromodomain helicase DNA binding protein 5 protein-coding 100151693 Mm.378403 NR_073535 ENSMUSG00000072492 Gm10364 EG545052 - 14|14 C3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 108305 Mmv7 Mmv-7 - - MCF endogenous virus 7 other 105247119 Gm42277 - - 4|4 predicted gene, 42277 ncRNA 100049555 Idd6.3 Idd6c - - insulin dependent diabetes susceptibility 6.3 unknown 102640369 Gm10138 - - 1|1 64.06 cM predicted gene 10138 ncRNA 100041093 Gm12827 - - 4|4 D2.1 predicted gene 12827 protein-coding 100418216 Cyp4b1-ps1 Gm12832 - 4|4 D1 cytochrome P450, family 4, subfamily b, polypeptide 1, pseudogene 1 pseudo 723904 NR_029838 ENSMUSG00000065485 Mir219a-2 Mir219-2|Mirn219-2|mir-219a-2|mmu-mir-219a-2 - 2|2 B microRNA 219a-2 ncRNA 74700 Mm.159306 NR_040735 ENSMUSG00000098627 4930524O08Rik - - 9|9 E3.1 RIKEN cDNA 4930524O08 gene ncRNA 100418470 Gm17205 - - 9|9 F1 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3 pseudogene pseudo 102639115 NR_152752 Gm15343 - - 10 C1|10 39.21 cM predicted gene 15343 ncRNA 627171 Trav1 Gm13987 - 14|14 C2 T cell receptor alpha variable 1 other 102636529 Gm28089 - - Y|Y predicted gene 28089 ncRNA 107400 AW742565 - - - expressed sequence AW742565 unknown 635504 Mm.359717 NR_151625 Gm7160 EG635504 - 1|1 E2.1 predicted gene 7160 ncRNA 211712 Mm.37126 NM_001081377 ENSMUSG00000055421 Pcdh9 - - 14 E2.1|14 45.8 cM protocadherin 9 protein-coding 97543 D9Mgi9 C80347 - - DNA Segment, Chr 9, Mouse Genome Informatics 9 unknown 242773 Mm.29280 NM_173774 ENSMUSG00000039838 Slc45a1 C230078B22|Dnb5 - 4|4 E2 solute carrier family 45, member 1 protein-coding 102632229 XR_377867 Gm30364 - - 6 D1|6 predicted gene, 30364 ncRNA 100040609 Gm14584 - - X A5|X casein kinase 1, gamma 3 pseudogene pseudo 102634628 Mm.435885 XR_388918 Gm11418 - - 11 B5|11 49.28 cM predicted gene 11418 ncRNA 546801 XM_006502500 Etv3l EG546801 - 3|3 F1 ets variant 3-like protein-coding 114680 Asthm1 - - - asthma 1 unknown 433604 Gm5540 EG433604|Gm1836 - 3 E1|3 acyl-CoA synthetase family member 2 pseudogene pseudo 101056270 Gm29810 - - 7 A3|7 predicted gene, 29810 pseudo 100043084 Gm4217 - - 15 E2|15 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 109461474 LOC109461474 - - - enhancer in intron 1 of Bmp7 biological-region 546965 Gm6004 EG546965 - 7 B3|7 protein phosphatase 1A, magnesium dependent, alpha isoform pseudogene pseudo 68777 Mm.331805 NM_026837 ENSMUSG00000048772 Tmem53 1110038M16Rik|1500001P22Rik|1700012A05Rik - 4|4 D1 transmembrane protein 53 protein-coding 100036459 Mcvq3 - - 10 57.74 cM mean corpuscular volume QTL 3 unknown 29813 Mm.14099 NM_013866 ENSMUSG00000000552 Zfp385a Hzf|Zfp385|Znf385a - 15|15 F3 zinc finger protein 385A protein-coding 116614 D7Tem16 - - - DNA segment, Chr 7, Tempel 16 unknown 404508 Olfr1399-ps1 - - 12|12 B3 olfactory receptor 1399, pseudogene 1 pseudo 15000 Mm.195060 NM_010388 ENSMUSG00000037548 H2-DMb2 H-2Mb2|H2-Mb2 - 17 B1|17 17.98 cM histocompatibility 2, class II, locus Mb2 protein-coding 258025 Mm.377332 NM_001011804 ENSMUSG00000075112 Olfr1211 MOR233-16P|MOR233-21 - 2|2 E1 olfactory receptor 1211 protein-coding 76726 1700121F22Rik - - - RIKEN cDNA 1700121F22 gene protein-coding 100417941 Gm12369 - - 4|4 A5 malate dehydrogenase 2, NAD (mitochondrial) pseudogene pseudo 15424 Mm.103825 NM_175730 ENSMUSG00000022485 Hoxc5 AI181837|Hox-3.4|Hox-6.2 - 15 F3|15 58.07 cM homeobox C5 protein-coding 105243150 XR_870276 Gm39149 Gm45581 - 8 A2|8 predicted gene, 39149 ncRNA 100503992 Mm.490240 NM_001025353 ENSMUSG00000071165 Gm6040 Defb51|EG574083 - 8|8 A2 predicted gene 6040 protein-coding 545500 Gm5841 EG545500 - 3|3 A1 ubiquitin specific peptidase 1 pseudogene pseudo 100862244 Gm21940 - - 6|6 predicted gene, 21940 protein-coding 100038599 Mm.381315 NM_001358023 ENSMUSG00000074517 Gm10710 - - 3 E3|3 predicted gene 10710 protein-coding 104936 Mm.442285 AU017263 - - - expressed sequence AU017263 unknown 78537 C030005H24Rik - - 13|13 A5 RIKEN cDNA C030005H24 gene unknown 667957 Cyp2b27-ps EG667957 - 7 A3|7 cytochrome P450, family 2, subfamily b, polypeptide 27, pseudogene pseudo 105243445 Gm39367 - - 9|9 predicted gene, 39367 ncRNA 435208 Gm5649 EG435208 - 10|10 A4 aldo-keto reductase family 1, member B8 pseudogene pseudo 100038605 Mm.490826 E030047D23Rik - - - RIKEN cDNA E030047D23 gene unknown 492892 Cd8mts5 - - 17 12.53 cM CD8 memory T cell subset 5 unknown 112156 Faq1 - - 4 81.46 cM fluctuating asymmetry QTL 1 unknown 22273 Mm.335460 NM_025407 ENSMUSG00000025651 Uqcrc1 1110032G10Rik - 9 F2|9 59.63 cM ubiquinol-cytochrome c reductase core protein 1 protein-coding 100416023 Cnn2-ps Gm17876 - 19|19 C1 calponin2, pseudogene pseudo 100039479 Mm.160381 NM_001167567 ENSMUSG00000096776 Vmn1r186 - - 7|7 vomeronasal 1 receptor Vmn1r186 protein-coding 100042241 Gm3744 - - 18 C|18 predicted gene 3744 pseudo 108167483 Gm46012 - - 7 D2|7 60S ribosomal protein L34 pseudogene pseudo 245381 Mm.123697 NM_173779 ENSMUSG00000044400 Sowahd A630014H24Rik|Ankrd58 - X|X A3.3 sosondowah ankyrin repeat domain family member D protein-coding 102465613 NR_105980 ENSMUSG00000099033 Mir7013 Gm27488|mmu-mir-7013 - 3|3 F2.1 microRNA 7013 ncRNA 493069 Lgth2 - - 2 62.49 cM body length 2 unknown 21785 Mm.1825 NM_009363 ENSMUSG00000024028 Tff2 SP|mSP - 17 A3.3|17 15.8 cM trefoil factor 2 (spasmolytic protein 1) protein-coding 100039350 Gm16500 - - 3|3 G3 predicted gene 16500 pseudo 245688 Mm.270186 NM_009031 ENSMUSG00000031353 Rbbp7 AA409861|AI173248|AU019541|BB114024|mRbAp46 - X|X F4 retinoblastoma binding protein 7, chromatin remodeling factor protein-coding 620966 Mm.301719 NR_033512 Gm6194 1700003N22Rik|EG620966 - 3|3 A1 transmembrane protein 189 pseudogene pseudo 100036362 Bod7 BOD13.1 - 13 42.19 cM bone length and organs 7 unknown 111877 Iap3rc1 - - - intracisternal A-type particle, U3 region, SINE repeat c-1 other 102466785 NR_105972 ENSMUSG00000098735 Mir7005 Gm27835|mmu-mir-7005 - 2|2 H4 microRNA 7005 ncRNA 100038521 Gm10683 - - - predicted gene 10683 protein-coding 62836 D12Mit235 - - 12 19.51 cM DNA segment, Chr 12, Massachusetts Institute of Technology 235 unknown 259046 Mm.377805 NM_147044 ENSMUSG00000096029 Olfr679 MOR40-2 - 7|7 E3 olfactory receptor 679 protein-coding 68953 Mm.295670 NM_026885 ENSMUSG00000033916 Chmp2a 1500016L11Rik|mVps2 - 7 A1|7 charged multivesicular body protein 2A protein-coding 77169 8030459D09Rik - - 6|6 RIKEN cDNA 8030459D09 gene protein-coding 105245864 XR_874979 Gm41252 - - 14 E4|14 predicted gene, 41252 ncRNA 102632557 XR_882338 Gm28840 - - Y C3|Y predicted gene 28840 ncRNA 97158 Mm.318680 C79562 - - - expressed sequence C79562 protein-coding 108514 Mpmv31 Mpmv-31 - - modified polytropic murine leukemia virus 31 other 66541 Mm.272253 NM_028260 ENSMUSG00000042670 Immp1l 1500034J20Rik|2610528O17Rik|AU042386 - 2|2 E3 IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) protein-coding 654465 Mm.424929 NM_001039125 ENSMUSG00000075573 Defb47 Defb41|EG654465 - 14 D1|14 defensin beta 47 protein-coding 328530 D030063E12 - - 15|15 B3.1 uncharacterized protein D030063E12 protein-coding 108256 Gapdh-ps8 Gapd-ps8|domes14 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 8 pseudo 102633591 XR_390445 Gm31379 - - 4 A3|4 predicted gene, 31379 ncRNA 110009 Sxa - - - sex chromosome association unknown 78576 D730001M18Rik - - 5|5 RIKEN cDNA D730001M18 gene protein-coding 102639733 Gm35975 - - 2|2 predicted gene, 35975 ncRNA 14081 Mm.210323 NM_007981 ENSMUSG00000018796 Acsl1 Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1 - 8|8 B1.1 acyl-CoA synthetase long-chain family member 1 protein-coding 105242735 XR_001785442 Gm38872 - - 6 E1|6 predicted gene, 38872 ncRNA 100862444 LOC100862444 - - - 40S ribosomal protein S9-like pseudo 71042 4933401J01Rik - - 1|1 RIKEN cDNA 4933401J01 gene protein-coding 102637089 XR_387093 Gm33991 - - X F3|X predicted gene, 33991 ncRNA 78198 4930527E20Rik - - 2|2 RIKEN cDNA 4930527E20 gene protein-coding 62023 D4Mit320 - - 4 28.85 cM DNA segment, Chr 4, Massachusetts Institute of Technology 320 unknown 102632973 XR_386949 Gm30914 - - X A7.1|X predicted gene, 30914 ncRNA 102634634 NR_136930 Gm20491 - - 17 E5|17 60.34 cM enolase 1, alpha non-neuron pseudogene pseudo 100217420 Mm.260084 NR_034048 ENSMUSG00000087935 Snora81 MBI-61 - 16 B1|16 small nucleolar RNA, H/ACA box 81 snoRNA 106993 AU022538 - - - expressed sequence AU022538 unknown 105355 Mm.27038 NM_134069 ENSMUSG00000036083 Slc17a3 AW261723|Npt4 - 13|13 A3.1 solute carrier family 17 (sodium phosphate), member 3 protein-coding 102640726 XR_376213 Gm36726 - - 3 H2|3 predicted gene, 36726 ncRNA 105243143 XR_870257 Gm39143 - - 8 A2|8 predicted gene, 39143 ncRNA 67460 Mm.393293 NM_026172 ENSMUSG00000028223 Decr1 1200012F07Rik|Decr|Nadph - 4|4 A2 2,4-dienoyl CoA reductase 1, mitochondrial protein-coding 100037297 Mm.402176 5430403G19Rik 430403G19Rik - 3 A1|3 RIKEN cDNA 5430403G19 gene unknown 102636822 Gm28219 - - Y|Y predicted gene 28219 protein-coding 71687 Mm.41409 NM_027865 ENSMUSG00000002032 Tmem25 0610039J01Rik|AI429491 - 9|9 A5.2 transmembrane protein 25 protein-coding 70145 Mm.429491 2210022D18Rik - - - RIKEN cDNA 2210022D18 gene protein-coding 723861 NR_029910 ENSMUSG00000065499 Mir384 Mirn384|mir-384|mmu-mir-384 - X|X D microRNA 384 ncRNA 668972 Gm14448 - - X|X A1.1 predicted gene 14448 pseudo 101055758 XM_006529978 LOC101055758 - - 1 C5 component of Sp100-rs-like protein-coding 319504 Mm.208439 NM_176930 ENSMUSG00000020598 Nrcam Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343 - 12 B2|12 20.71 cM neuronal cell adhesion molecule protein-coding 108168169 XR_001781318 Gm46460 - - 14 D2|14 predicted gene, 46460 ncRNA 108168973 XR_001784410 Gm12828 - - 4 D1|4 53.46 cM predicted gene 12828 ncRNA 110391 Mm.30204 NM_024236 ENSMUSG00000015806 Qdpr 2610008L04Rik|D5Ertd371e|Dhpr|PKU2 - 5 B3|5 24.9 cM quinoid dihydropteridine reductase protein-coding 100035310 Myci1 Myo-1 - 7 87.93 cM myocardial infarction 1 unknown 223697 Mm.202715 NM_194342 ENSMUSG00000042524 Sun2 B230369L08Rik|C030011B15|Unc84b - 15|15 E1 Sad1 and UNC84 domain containing 2 protein-coding 62754 D17Mit190 - - 17 55.93 cM DNA segment, Chr 17, Massachusetts Institute of Technology 190 unknown 20460 Mm.3988 NM_009185 ENSMUSG00000028718 Stil Sil - 4|4 D1 Scl/Tal1 interrupting locus protein-coding 320384 Mm.439113 B230334L07Rik - - 1|1 RIKEN cDNA B230334L07 gene protein-coding 790900 Ighv5-13 - - 12|12 F1 immunoglobulin heavy variable V5-13 pseudo 207425 Mm.229323 NM_172255 ENSMUSG00000042055 Wdr11 2900055P10Rik|AW489876|Brwd2|mKIAA1351 - 7|7 F3 WD repeat domain 11 protein-coding 105245463 XR_873236 Gm40912 - - 13 A3.3|13 predicted gene, 40912 ncRNA 71865 Mm.276229 NM_027968 ENSMUSG00000047648 Fbxo30 1700026A16Rik|MUSA1 - 10|10 A1 F-box protein 30 protein-coding 108168675 XR_001782933 LOC108168675 - - - uncharacterized LOC108168675 ncRNA 100416765 Gm18237 - - 16|16 B2 zinc finger protein 161 pseudogene pseudo 100418055 Gm18969 - - 1|1 E1.1 ubiquinol-cytochrome c reductase core protein 1 pseudogene pseudo 108168142 XR_001781185 Gm46444 - - 14 A3|14 predicted gene, 46444 ncRNA 108167740 XR_001779518 LOC108167740 - - 1 H2.1 uncharacterized LOC108167740 ncRNA 67732 Mm.335830 NM_026347 ENSMUSG00000062054 Iah1 1500019E20Rik|4833421E05Rik - 12|12 A1.3 isoamyl acetate-hydrolyzing esterase 1 homolog protein-coding 102640044 Mm.400673 XR_881887 Gm26550 - - 7 A3|7 predicted gene, 26550 ncRNA 102640747 XR_373733 Gm15423 - - 1 H4|1 82.66 cM predicted gene 15423 ncRNA 258039 Mm.377335 NM_001011809 ENSMUSG00000050030 Olfr728 MOR246-1P - 14|14 C1 olfactory receptor 728 protein-coding 100311 AU022680 - - - expressed sequence AU022680 protein-coding 53330 Mm.10699 NM_016796 ENSMUSG00000026696 Vamp4 D1Ertd147e|Vamp-4 - 1 H2.1|1 70.29 cM vesicle-associated membrane protein 4 protein-coding 30863 C78662 - - - EST C78662 protein-coding 102465189 NR_105785 ENSMUSG00000099293 Mir6366 Gm27720|mmu-mir-6366 - 16|16 A3 microRNA 6366 ncRNA 108169042 XR_001784851 Gm43700 - - 5 B3|5 predicted gene 43700 ncRNA 16443 Mm.40546 NM_010587 ENSMUSG00000022957 Itsn1 AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17 - 16|16 C4 intersectin 1 (SH3 domain protein 1A) protein-coding 667660 Mm.486072 Trav9n-2 Gm10897 - 14|14 C2 T cell receptor alpha variable 9N-2 other 13492 Mm.167154 NM_013503 ENSMUSG00000039358 Drd5 D5R|Drd-5|Drd1b|Gpcr1 - 5 B3|5 20.4 cM dopamine receptor D5 protein-coding 100040981 XM_001476028 ENSMUSG00000096230 Gm16429 EG666089 - 5|5 E3 predicted gene 16429 protein-coding 100035633 Ptnu3 - - - proteinuria 3 unknown 240726 Mm.24481 NM_172841 ENSMUSG00000025938 Slco5a1 4732454B15|A630033C23Rik|AA407151 - 1|1 A3 solute carrier organic anion transporter family, member 5A1 protein-coding 100568459 NR_038088 ENSMUSG00000115783 Bc1 Gm24367 - 7 F5|7 brain cytoplasmic RNA 1 ncRNA 328362 Gm38408 B930071L05 - 14|14 A3 predicted gene, 38408 protein-coding 100035917 Abfw1 - - - abdominal fat weight 1 unknown 100504166 Mm.426309 NR_036602 ENSMUSG00000085037 4933421O10Rik - - 4 14.61 cM|4 A5 RIKEN cDNA 4933421O10 gene ncRNA 619209 Rr18 Xca|Xce|Xite - X|X regulatory region 18 other 19357 Mm.182628 NM_009009 ENSMUSG00000022314 Rad21 SCC1|mKIAA0078 - 15|15 C RAD21 cohesin complex component protein-coding 18518 Mm.7454 NM_008784 ENSMUSG00000031221 Igbp1 AI115586|AI662457|AW208785|C81413|Pc52|Tap42|p52 - X|X C3 immunoglobulin (CD79A) binding protein 1 protein-coding 105246988 XR_880624 Gm42176 - - X A3.1|X predicted gene, 42176 ncRNA 666974 NM_001204917 Gm8394 EG666974 - 10|10 C1 proteasome zeta chain pseudo 110194 Xlr2 Xlr-2 - - X-linked lymphocyte-regulated 2 protein-coding 359969 DXMgc106 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 106 unknown 102641053 LOC102641053 - - - non-histone chromosomal protein HMG-14-like pseudo 108477 Ms85 MMS85 - - minisatellites detected by probe MMS85 other 545861 Mm.321419 NM_001034902 ENSMUSG00000072952 Gm5878 EG545861 - 6 C3|6 predicted gene 5878 protein-coding 105245940 XR_875322 Gm41312 - - 15 B3.1|15 predicted gene, 41312 ncRNA 102637124 Gm21871 - - Y|Y predicted gene, 21871 protein-coding 66280 Mm.45859 1810028F09Rik - - 14|14 C1 RIKEN cDNA 1810028F09 gene protein-coding 13462 Dp(17)1t - - - duplication, Chr 17, t 1 other 72228 Mm.271211 1700021L22Rik - - 6|6 RIKEN cDNA 1700021L22 gene protein-coding 100035370 Alpq1 - - 9 28.62 cM alcohol preference QTL 1 unknown 102635432 XR_877845 Gm32771 - - 19 C3|19 predicted gene, 32771 ncRNA 110524 Mm.260921 NM_199011 ENSMUSG00000004815 Dgkq 110kDa|DAGK|DAGK7|Dagk4|Dgkd - 5 F|5 53.24 cM diacylglycerol kinase, theta protein-coding 100312562 Vmn1r-ps134 - - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 134 pseudo 102467416 n-TKctt20 n-Tk20 - - nuclear encoded tRNA lysine 20 (anticodon TTT) tRNA 102634603 XR_386817 Gm32144 - - 19 D2|19 predicted gene, 32144 ncRNA 217737 Mm.22626 NM_146036 ENSMUSG00000021037 Ahsa1 BC023857|p38 - 12|12 D2 AHA1, activator of heat shock protein ATPase 1 protein-coding 666901 Tpt1-ps2 Gm12476 - 4|4 B2 tumor protein, translationally-controlled, pseudogene 2 pseudo 20254 Mm.5038 NM_009129 ENSMUSG00000050711 Scg2 Chgc|SgII - 1 C4|1 40.89 cM secretogranin II protein-coding 75339 Mm.152466 NM_023773 ENSMUSG00000079184 Mphosph8 1500035L22Rik|4930548G07Rik|AU040635 - 14|14 C3 M-phase phosphoprotein 8 protein-coding 234865 Mm.267812 NM_172288 ENSMUSG00000039509 Nup133 mermaid - 8|8 E2 nucleoporin 133 protein-coding 112285 Pas7 - - 18 45.88 cM pulmonary adenoma susceptibility 7 unknown 62412 D15Mit174 - - 15 1.84 cM DNA segment, Chr 15, Massachusetts Institute of Technology 174 unknown 100039353 Gm2178 - - 14 A3|14 ribosomal protein L34 pseudogene pseudo 243653 Mm.131289 NM_175526 ENSMUSG00000033082 Clec1a 5930406N14Rik - 6|6 F3 C-type lectin domain family 1, member a protein-coding 61147 DXMit220 - - X 73.95 cM DNA Segment, Chr X Massachusetts Institute of Technology 220 unknown 112214 Daq10 - - - directional asymmetry QTL 10 unknown 60970 D12Mit2 - - 12 18.94 cM DNA segment, Chr 12, Massachusetts Institute of Technology 2 unknown 257756 Olfr838-ps1 GA_x5J8B7W6RL5-13695863-13696754 - 9|9 A2 olfactory receptor 838, pseudogene 1 pseudo 102631842 XR_391282 Gm28077 - - 7 B2|7 predicted gene 28077 ncRNA 493157 Si5lq2 - - 9 17.8 cM serum IGFBP-5 level QTL 2 unknown 102467412 n-TCgca15 n-Tc15 - 6 B2.3|6 nuclear encoded tRNA cysteine 15 (anticodon GCA) tRNA 100503362 Rps12-ps26 Gm11717 - 11|11 70.19 cM ribosomal protein S12, pseudogene 26 pseudo 100312956 Mm.475850 NM_001167592 ENSMUSG00000094995 Pate3 Gm17365|Pate-dj - 9 A4|9 20.37 cM prostate and testis expressed 3 protein-coding 105244707 Gm40266 - - 5|5 predicted gene, 40266 ncRNA 102633428 XR_384983 Gm31258 - - 16 C3.1|16 predicted gene, 31258 ncRNA 100416336 Gm16184 - - 7|7 A3 ribosomal protein L14 pseudogene pseudo 69568 Mm.288718 NM_027121 ENSMUSG00000066735 Vkorc1l1 2310024K08Rik - 5|5 G1.3 vitamin K epoxide reductase complex, subunit 1-like 1 protein-coding 61877 D1Mit331 - - 1 39.16 cM DNA segment, Chr 1, Massachusetts Institute of Technology 331 unknown 383650 Psmb6-ps2 EG383650|Lmp19-ps1|Psmb6-rs1 - 1 E1.1|1 49.26 cM proteasome (prosome, macropain) subunit, beta type 6, pseudogene 2 pseudo 102636477 Mm.387235 Gm26632 - - 8|8 predicted gene, 26632 ncRNA 594843 Mm.484850 NR_002874 ENSMUSG00000086541 Has2os EG594843|Has2as|Hasnt - 15 D1|15 hyaluronan synthase 2, opposite strand ncRNA 266614 Mm.104680 NM_148939 ENSMUSG00000043807 Ly6g5b - - 17|17 B1 lymphocyte antigen 6 complex, locus G5B protein-coding 668248 Gm9066 EG668248 - 19|19 C2 high mobility group box 1-like pseudogene pseudo 108168263 XR_001781760 Gm46536 - - 15 F1|15 predicted gene, 46536 ncRNA 105244345 XM_011239896 LOC105244345 - - 2 H1 small nuclear ribonucleoprotein Sm D1-like protein-coding 102637708 Gm34449 - - 5|5 predicted gene, 34449 ncRNA 102634599 Gm32140 - - 4|4 predicted gene, 32140 ncRNA 100038391 Mm.399123 Gm10287 - - 3 H3|3 predicted gene 10287 unknown 105246355 Gm41655 - - 17 E5|17 predicted gene, 41655 pseudo 105244205 Gm39855 - - 2|2 predicted gene, 39855 ncRNA 85140 D7Mit302 - - 7 55.98 cM DNA segment, Chr 7, Massachusetts Institute of Technology 302 unknown 100039162 Gm2075 - - 12 D2|12 predicted pseudogene 2075 pseudo 100416337 Gm18049 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 111374 Mtv1 Mtv-1 - - mammary tumor virus locus 1 other 102631558 XR_376085 Gm29865 - - 3 G3|3 predicted gene, 29865 ncRNA 78348 Mm.443303 1700043A12Rik - - 9|9 RIKEN cDNA 1700043A12 gene protein-coding 628256 Gm6859 EG628256 - 10|10 C3 transaldolase 1 pseudogene pseudo 27211 NR_000003 ENSMUSG00000065818 Snord35a Rnu35a|U35|U35A - 7|7 B3 small nucleolar RNA, C/D box 35A snoRNA 14618 Mm.21198 NM_008124 ENSMUSG00000047797 Gjb1 Cnx32|Cx32|connexin-32 - X D|X 44.06 cM gap junction protein, beta 1 protein-coding 228061 Mm.31227 NM_172666 ENSMUSG00000042410 Agps 5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2 - 2|2 C3 alkylglycerone phosphate synthase protein-coding 142980 Mm.33874 NM_126166 ENSMUSG00000031639 Tlr3 AI957183 - 8|8 B1.1 toll-like receptor 3 protein-coding 619945 Mm.359372 NM_001037908 ENSMUSG00000072874 Gm6116 EG619945 - 5 C3.3|5 predicted gene 6116 ncRNA 102634052 XR_374672 Gm31731 - - 2 C3|2 predicted gene, 31731 ncRNA 100035406 Dbm1 - - - diabetes modifier 1 unknown 52336 D5Ertd525e - - 5 81.23 cM DNA segment, Chr 5, ERATO Doi 525, expressed unknown 435818 Mm.359648 NM_001085529 ENSMUSG00000062064 Slc2a7 - - 4 E2|4 solute carrier family 2 (facilitated glucose transporter), member 7 protein-coding 258820 Mm.377709 NM_146823 ENSMUSG00000051424 Olfr1184 MOR225-3 - 2|2 D olfactory receptor 1184 protein-coding 112349 Gasa2 - - 4 80.52 cM gastritis type A susceptibility locus 2 unknown 664968 Mm.292837 NM_029384 ENSMUSG00000030431 Tmem238 2210411K11Rik - 7|7 A1 transmembrane protein 238 protein-coding 545645 Mm.489553 NM_001085531 ENSMUSG00000100505 Gm13283 EG545645 - 4 C4|4 predicted gene 13283 protein-coding 100534349 Gm21038 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 629656 Gm6992 EG629656 - 12|12 A2 pyruvate kinase, muscle pseudogene pseudo 100417775 Gm12014 - - 11|11 A2 signal peptide, CUB domain, EGF-like 3 pseudogene pseudo 102635847 XR_385180 Gm33086 - - 17 A1|17 predicted gene, 33086 ncRNA 110639 Mm.272955 NM_026662 ENSMUSG00000025742 Prps2 2610101M19Rik|AA589463|AI464149|Prps-2 - X F5|X 78.32 cM phosphoribosyl pyrophosphate synthetase 2 protein-coding 108168248 XR_001781723 Gm46523 - - 15 D3|15 predicted gene, 46523 ncRNA 105245757 Gm41156 - - 14|14 predicted gene, 41156 ncRNA 56860 Mm.377127 NM_020290 ENSMUSG00000050266 Olfr690 MOR31-2|Ors18 - 7|7 E3 olfactory receptor 690 protein-coding 78874 B230201I24Rik - - - RIKEN cDNA B230201I24 gene protein-coding 13119 Mm.250901 NM_007822 ENSMUSG00000028715 Cyp4a14 AI314743 - 4 D1|4 53.04 cM cytochrome P450, family 4, subfamily a, polypeptide 14 protein-coding 100417388 Gm12899 - - 4|4 C7 osteoclast stimulating factor 1 pseudogene pseudo 319944 Mm.380957 NM_001081288 ENSMUSG00000037343 Taf2 150kDa|4732460C16Rik|AI425886|CIF150|TAF2B|TAFII-150|TAFII150 - 15|15 D1 TATA-box binding protein associated factor 2 protein-coding 434460 Rps15a-ps2 EG434460|Gm5623 - 19|19 C1 ribosomal protein S15A, pseudogene 2 pseudo 100503044 Mm.65320 NM_176992 ENSMUSG00000044522 A730020M07Rik - - 3|3 G1 RIKEN cDNA A730020M07 gene ncRNA 100035937 Ascla6 - - 12 22.79 cM atherosclerotic lesion area 6 unknown 384007 Gm12389 - - 4|4 A5 predicted gene 12389 pseudo 14194 Mm.41502 NM_010209 ENSMUSG00000026526 Fh1 Fh|Fh-1 - 1|1 H3 fumarate hydratase 1 protein-coding 62858 D12Mit185 - - 12 9.85 cM DNA segment, Chr 12, Massachusetts Institute of Technology 185 unknown 105246031 XR_875637 Gm41393 - - 15 F1|15 predicted gene, 41393 ncRNA 27741 210N7.T7 - - - DNA segment, 210N7.T7 (Roswell Park) unknown 606525 Gm6058 EG606525|Gabarapl2-ps1_1522.1 - 1|1 H1 GABA(A) receptor-associated protein-like 2 pseudogene 1_1522.1 pseudo 319230 6720417O19Rik - - 9|9 RIKEN cDNA 6720417O19 gene protein-coding 108168628 XM_017318836 LOC108168628 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 111863 Pltr3 - - - polytropic long terminal repeat containing proviral locus 3 other 102637107 Mm.406835 NR_131924 ENSMUSG00000085388 Ptf1aos Gm13336 - 2 A3|2 13.36 cM pancreas specific transcription factor 1a, opposite strand ncRNA 108370 Etnmg1 - - - early transposon element MG1 other 672959 Rps12l1 Gm15887|Rps12-ps8 - 7 B5|7 ribosomal protein S12-like 1 pseudo 100862118 XM_003688962 ENSMUSG00000096645 Spin2e Gm21492 - X A3.1|X spindlin family, member 2E protein-coding 100503068 Mm.389423 NR_040411 ENSMUSG00000085007 Gm11549 - - 3 B|3 17.48 cM predicted gene 11549 ncRNA 64652 Mm.298728 NM_022656 ENSMUSG00000021910 Nisch 1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn - 14|14 B nischarin protein-coding 18792 Mm.4183 NM_008873 ENSMUSG00000021822 Plau u-PA|uPA - 14 A3|14 11.53 cM plasminogen activator, urokinase protein-coding 62863 D11Mit291 - - 11 77.25 cM DNA segment, Chr 11, Massachusetts Institute of Technology 291 unknown 108168521 XM_017318713 LOC108168521 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 258139 Mm.377357 NM_001011847 ENSMUSG00000057461 Olfr591 MOR24-1P - 7|7 E3 olfactory receptor 591 protein-coding 102632472 XR_866953 Gm30536 - - 2 H3|2 predicted gene, 30536 ncRNA 11832 Mm.8728 NM_007473 ENSMUSG00000028427 Aqp7 AQP7L|AQPap - 4|4 A5 aquaporin 7 protein-coding 16504 Mm.40312 NM_008422 ENSMUSG00000062785 Kcnc3 KShIIID|Kcr2-3|Kv3.3 - 7 B3|7 28.85 cM potassium voltage gated channel, Shaw-related subfamily, member 3 protein-coding 105247156 XR_881383 Gm42307 - - 4 C3|4 predicted gene, 42307 ncRNA 100417634 Gm15006 - - X|X F1 presenilin associated, rhomboid-like pseudogene pseudo 623448 Gm13408 - - 2|2 B ribosomal protein S3A pseudogene pseudo 66567 2510022D24Rik - - - RIKEN cDNA 2510022D24 gene protein-coding 674032 Gm9611 - - 14 B|14 predicted gene 9611 protein-coding 170663 Lcho3 - - - liver cholesterol 3 unknown 320951 Mm.273765 NM_177298 ENSMUSG00000023452 Pisd 9030221M09Rik - 5|5 B1 phosphatidylserine decarboxylase protein-coding 66625 Mm.100117 NM_025669 ENSMUSG00000028248 Pnisr 5730406M06Rik|AA673174|Pinsr|Sfrs18|Srsf18 - 4|4 A3 PNN interacting serine/arginine-rich protein-coding 102639686 XR_379298 Gm35940 - - 9 A5.1|9 predicted gene, 35940 ncRNA 545384 Mm.371698 NM_001024721 ENSMUSG00000070501 Ifi214 Pyhin-B|p214 - 1|1 H3 interferon activated gene 214 protein-coding 227326 Mm.244158 NM_001033290 ENSMUSG00000049608 Gpr55 CTFL|Gm218|Lpir1 - 1|1 C5 G protein-coupled receptor 55 protein-coding 171510 Gasa4 - - 17 20.67 cM gastritis type A susceptibility locus 4 unknown 100416341 Gm18053 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 27909 D16Ium56 - - 16 36.93 cM DNA segment, Chr 16, Indiana University Medical 56 unknown 112163570 AU015051 - - - expressed sequence AU015051 protein-coding 258111 Mm.376122 NM_001011836 ENSMUSG00000062272 Olfr1129 MOR264-23|MOR264-9P - 2|2 D olfactory receptor 1129 protein-coding 110943 Kcna1-rs2 - - - potassium voltage-gated channel, shaker-related subfamily, member 1, related sequence 2 protein-coding 108168890 XR_001783951 Gm46819 - - 3 F2.2|3 predicted gene, 46819 ncRNA 102632827 XR_381760 Gm30799 - - 12 D1|12 predicted gene, 30799 ncRNA 102634334 Gm31941 - - 7 B3|7 predicted gene, 31941 pseudo 73360 Mm.60929 NM_028514 ENSMUSG00000046615 Actrt1 1700061J02Rik|Arp-T1 - X|X A4 actin-related protein T1 protein-coding 622408 Mm.360976 NM_001037914 ENSMUSG00000074651 Mcidas EG622408|Gm6320|Idas|Mci|Mcin - 13 D2.2|13 multiciliate differentiation and DNA synthesis associated cell cycle protein protein-coding 67134 Mm.29363 NM_024193 ENSMUSG00000027405 Nop56 2310044F10Rik|Nol5a - 2|2 F1 NOP56 ribonucleoprotein protein-coding 19674 Mm.439726 NM_009038 ENSMUSG00000020907 Rcvrn CAR|S-modulin - 11 B3|11 41.13 cM recoverin protein-coding 108167666 XR_001779237 Gm46121 - - 9 E1|9 predicted gene, 46121 ncRNA 109284 Mm.300416 NM_177994 ENSMUSG00000035781 R3hdm4 AI503502|C030046I01Rik - 10|10 C1 R3H domain containing 4 protein-coding 105246535 Gm41809 - - 19|19 predicted gene, 41809 ncRNA 105245713 XR_874490 Gm41121 - - 14 B|14 predicted gene, 41121 ncRNA 105246136 XR_876161 Gm41474 - - 16 C3.1|16 predicted gene, 41474 ncRNA 108168489 Gm46692 - - X F5|X 40S ribosomal protein S29 pseudogene pseudo 66341 Mm.443284 NM_025499 ENSMUSG00000109864 Eid3 1700027M21Rik|NS4EB - 10|10 C1 EP300 interacting inhibitor of differentiation 3 protein-coding 100041339 Mm.403680 NR_046071 ENSMUSG00000108063 Gm3279 - - 6 B3|6 predicted gene 3279 ncRNA 257833 Olfr1144-ps1 GA_x5J8B7W3Y5M-1094074-1093275 - 2|2 D olfactory receptor 1144, pseudogene 1 pseudo 22767 Mm.4324 NM_009570 ENSMUSG00000053211 Zfy1 Zfy-1|Zfy2 - Y|Y A1 zinc finger protein 1, Y-linked protein-coding 109392 Cbm5 Cbs19b - - cerebellum weight 5 unknown 70782 4631402F24Rik - - 17|17 RIKEN cDNA 4631402F24 gene protein-coding 102634954 XR_374794 Gm32413 - - 2 E1|2 predicted gene, 32413 ncRNA 620544 Gm13576 - - 2|2 C1.3 Parkinson disease 7 domain containing 1 pseudogene pseudo 227632 Mm.119462 NM_175462 ENSMUSG00000058740 Kcnt1 C030030G16Rik|Slack|Slo2.2|slo2 - 2|2 A3 potassium channel, subfamily T, member 1 protein-coding 241727 Mm.39312 NM_198214 ENSMUSG00000027457 Snph 6430515A01|AW045671|AW556958|AW743098|mKIAA0374 - 2|2 G3 syntaphilin protein-coding 106854 AA517638 - - - expressed sequence AA517638 unknown 23849 Mm.275036 NM_011803 ENSMUSG00000000078 Klf6 AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9 - 13|13 A1 Kruppel-like factor 6 protein-coding 85152 D1Mit377 - - 1 28.78 cM DNA segment, Chr 1, Massachusetts Institute of Technology 377 unknown 107423 Tag - - - temporal alpha-galactosidase protein-coding 100379129 Mm.31008 Gm10353 - - 19 A|19 6.04 cM predicted gene 10353 unknown 110120564 LOC110120564 - - - VISTA enhancer mm1457 biological-region 260419 Acsns1 Acsns - - Angiostrongylus costaricensis nematode susceptibility 1 unknown 100503827 Mm.419413 XR_879970 Tnfsf13os 2010012P19Rik - 11|11 B3 tumor necrosis factor (ligand) superfamily, member 13, opposite strand ncRNA 385343 Mm.379566 NM_001025084 ENSMUSG00000071773 Rhox1 - - X|X A3.3 reproductive homeobox 1 protein-coding 100044193 NM_001024731 ENSMUSG00000095193 Gm20939 - - 17|17 E5 predicted gene, 20939 protein-coding 61362 D4Mit183 - - 4 22.17 cM DNA segment, Chr 4, Massachusetts Institute of Technology 183 unknown 77762 Mm.434298 NR_108086 ENSMUSG00000100217 9930111H07Rik - - 1|1 C5 RIKEN cDNA 9930111H07 gene ncRNA 53051 CA25.5 - - - DNA segment, CA25.5 unknown 327954 Mm.247478 NM_177617 ENSMUSG00000005237 Dnah2 2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3 - 11 B3|11 42.63 cM dynein, axonemal, heavy chain 2 protein-coding 106804091 LOC106804091 - - - nonconserved acetylation island sequence M61 enhancer biological-region 121021 Mm.41329 NM_139001 ENSMUSG00000032911 Cspg4 4732461B14Rik|AN2|NG2 - 9|9 B chondroitin sulfate proteoglycan 4 protein-coding 102633199 Mm.490862 XR_877350 Gm31087 - - 18 B3|18 predicted gene, 31087 ncRNA 102631705 XM_006520208 Gm29975 - - 15 B1|15 predicted gene, 29975 protein-coding 102075 Mm.32034 NM_175321 ENSMUSG00000014782 Plekhg4 4931414L13Rik|AI448583|mFLJ00068 - 8|8 D3 pleckstrin homology domain containing, family G (with RhoGef domain) member 4 protein-coding 74942 Mm.60689 NR_040477 ENSMUSG00000103692 4930503O07Rik - - 1|1 H6 RIKEN cDNA 4930503O07 gene ncRNA 23994 Mm.486175 NM_011873 ENSMUSG00000000346 Dazap2 AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058 - 15 F1|15 56.36 cM DAZ associated protein 2 protein-coding 100039589 Gm2329 - - 7|7 B4 predicted gene 2329 protein-coding 102640564 XR_386286 Gm36598 - - 18 E1|18 predicted gene, 36598 ncRNA 94220 Mm.422638 NM_033570 ENSMUSG00000037408 Cnnm4 5430430O18Rik|Acdp4 - 1 B|1 15.28 cM cyclin M4 protein-coding 71819 Mm.259374 NM_024245 ENSMUSG00000032254 Kif23 3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1 - 9|9 B kinesin family member 23 protein-coding 100039484 XM_006519755 Gm2260 - - 14 A3|14 predicted gene 2260 protein-coding 100036191 Ses1b Ses1.1 - - salmonella enteritidis susceptibility 1b unknown 116733 Mm.236004 NM_126165 ENSMUSG00000031913 Vps4a 4930589C15Rik|AI325971|AW553189 - 8|8 D3 vacuolar protein sorting 4A protein-coding 78638 Mm.71171 NR_131003 ENSMUSG00000112028 1700113B09Rik - - 10|10 B5.3 RIKEN cDNA 1700113B09 gene ncRNA 105246174 XR_876299 Gm41508 - - 16 C4|16 predicted gene, 41508 ncRNA 107442 Sipd1 Sip - - schedule-induced polydipsia protein-coding 545700 Mm.389595 NR_002888 ENSMUSG00000052912 Smarca5-ps 9230115A19Rik - 4|4 E1 SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene pseudo 102638490 XR_381700 Gm35041 - - 12 C3|12 predicted gene, 35041 ncRNA 226527 Mm.215960 NM_001033284 ENSMUSG00000033488 Cryzl2 - - 1|1 H1 crystallin zeta like 2 protein-coding 60959 DXMit97 - - X 49.58 cM DNA segment, Chr X, Massachusetts Institute of Technology 97 unknown 100416205 Gm17964 - - 1|1 G3 ribosomal protein L5 pseudogene pseudo 100043596 Mm.484977 NM_001166848 ENSMUSG00000094208 Vmn1r130 Gm4542 - 7 A3|7 vomeronasal 1 receptor 130 protein-coding 16754 l7Rk1 l(7)-1Rk - - lethal, Chr 7, Roderick 1 unknown 100038629 Mm.483296 Gm10463 - - - predicted gene 10463 unknown 434036 Igkv13-85 Gm16903|gn33 - 6|6 C1 immunoglobulin kappa chain variable 13-85 other 71392 Mm.22800 NM_001244628 ENSMUSG00000094113 5430401F13Rik - - 6|6 F3 RIKEN cDNA 5430401F13 gene protein-coding 171219 Pcpila3 - - - PCP induced locomotor activity 3 unknown 116939 Mm.390817 NM_054088 ENSMUSG00000041653 Pnpla3 Adpn - 15|15 E2 patatin-like phospholipase domain containing 3 protein-coding 52535 Mm.5750 NM_001029990 ENSMUSG00000004561 Mettl17 2310032K15Rik|D14Ertd209e|Mett11d1 - 14 C1|14 26.71 cM methyltransferase like 17 protein-coding 105247126 Mm.477962 NR_151695 Gm16731 - - 4 B1|4 24.87 cM predicted gene, 16731 ncRNA 102467327 n-TIaat15 n-Ti15 - 13 A3.1|13 nuclear encoded tRNA isoleucine 15 (anticodon TAT) tRNA 21015 T(1;17)190Ca T190Ca - - reciprocal translocation, Chr 1 and 17, Carter 190 other 668077 Gm13683 - - 2|2 D family with sequence similarity 54, member A pseudogene pseudo 61062 D4Mit261 - - 4 5.2 cM DNA segment, Chr 4, Massachusetts Institute of Technology 261 unknown 70044 Mm.165979 NM_197993 ENSMUSG00000071645 Tut1 2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP - 19|19 A terminal uridylyl transferase 1, U6 snRNA-specific protein-coding 100417247 Gm12635 - - 4|4 C5 HLA-B associated transcript 2 pseudogene pseudo 110762 Igkj4 Igk-J4 - 6 C1|6 32.04 cM immunoglobulin kappa joining 4 other 100861480 NR_046127 ENSMUSG00000094751 Gm25018 Rn5s10 - 8 E1|8 predicted gene, 25018 rRNA 61749 D4Mit254 - - 4 83.75 cM DNA segment, Chr 4, Massachusetts Institute of Technology 254 unknown 320441 Mm.443051 A130022F02Rik - - 2|2 RIKEN cDNA A130022F02 gene protein-coding 258941 Mm.377760 NM_146939 ENSMUSG00000055088 Olfr354 MOR127-4 - 2|2 B olfactory receptor 354 protein-coding 170571 Mm.209232 NM_130457 ENSMUSG00000031772 Cntnap4 Caspr4|E130114F09Rik - 8|8 E1 contactin associated protein-like 4 protein-coding 14223 Fkbp1a-ps2 Fkbp-rs2|Fkbp1-rs2 - 10 A3|10 9.76 cM FK506 binding protein 1a, pseudogene 2 pseudo 216961 Mm.33477 NM_139128 ENSMUSG00000020836 Coro6 - - 11|11 B5 coronin 6 protein-coding 77280 Mm.446277 9430040K09Rik - - 16|16 RIKEN cDNA 9430040K09 gene protein-coding 68121 Mm.288739 NM_023873 ENSMUSG00000056267 Cep70 6720484E09Rik|Bite|C030018L16Rik - 9|9 E3.3 centrosomal protein 70 protein-coding 73433 XR_386622 1700048O14Rik - - 19|19 C1 RIKEN cDNA 1700048O14 gene ncRNA 73397 Mm.48745 NR_040726 ENSMUSG00000093616 1700055C04Rik - - 9|9 C RIKEN cDNA 1700055C04 gene ncRNA 14552 Mm.453133 Gdap7 - - - ganglioside-induced differentiation-associated-protein 7 protein-coding 102641509 XR_877919 ENSMUSG00000089679 Gm16299 - - 19 D2|19 48.58 cM predicted gene 16299 ncRNA 111999 Emo2 - - 15 34.41 cM emotionality 2 unknown 102857 Mm.274553 NM_133987 ENSMUSG00000019558 Slc6a8 AA589632|CRT|CRTR|CT1|CTR5|Creat - X A7.3|X 37.38 cM solute carrier family 6 (neurotransmitter transporter, creatine), member 8 protein-coding 94063 Mm.203928 NM_025606 ENSMUSG00000024683 Mrpl16 2310039D06Rik - 19|19 A mitochondrial ribosomal protein L16 protein-coding 332427 Mm.332981 NM_001033427 ENSMUSG00000061584 Lyg2 Gm776 - 1|1 B lysozyme G-like 2 protein-coding 668434 Gm9168 EG668434 - 8|8 E2 ribosomal protein S2 pseudogene pseudo 62079 D10Mit64 - - 10 38.48 cM DNA segment, Chr 10, Massachusetts Institute of Technology 64 unknown 75011 Mm.359615 XM_011246736 4930488N24Rik - - 17|17 A2 RIKEN cDNA 4930488N24 gene protein-coding 114813 Bw19 QbwX - X 24.88 cM body weight QTL 19 unknown 21954 Mm.27674 NM_009406 ENSMUSG00000035458 Tnni3 Tn1|cTnI - 7 A1|7 2.61 cM troponin I, cardiac 3 protein-coding 404402 Olfr534-ps1 GA_x5J8B7W72BC-33522-34417 - 7|7 F4 olfactory receptor 534, pseudogene 1 pseudo 666288 Gm15039 - - X|X F1 predicted gene 15039 pseudo 102467420 n-TAtgc5 n-Ta34 - 5 G1.1|5 nuclear encoded tRNA alanine 5 (anticodon TGC) tRNA 20932 Mm.300594 NM_011512 ENSMUSG00000014867 Surf4 AL033340|AL033373|Surf-4 - 2 A3|2 19.1 cM surfeit gene 4 protein-coding 105244887 XM_017321867 Gm40415 - - 6 D1|6 predicted gene, 40415 protein-coding 240880 Mm.389213 NM_028776 ENSMUSG00000026584 Scyl3 1200016D23Rik|6030457O16|AW214499|Pace1 - 1|1 H2.1 SCY1-like 3 (S. cerevisiae) protein-coding 12955 Mm.178 NM_009964 ENSMUSG00000032060 Cryab Crya-2|Crya2|HspB5|P23 - 9 A5.3|9 27.75 cM crystallin, alpha B protein-coding 493052 Fcsa7 - - 12 9.69 cM femoral cross-sectional area 7 unknown 622474 Mm.456691 NM_001039889 ENSMUSG00000079156 Smok3b 4931427P12Rik|Smok2b2 - 5|5 G2 sperm motility kinase 3B protein-coding 654793 Mm.448948 NR_153841 G630016G05Rik - - 2|2 E5 RIKEN cDNA G630016G05 gene ncRNA 102633213 Mm.123425 XR_001780735 Gm20658 BMH1 - 12 F2|12 62.59 cM predicted gene 20658 ncRNA 15557 Mm.5040 NM_008310 ENSMUSG00000050783 Htr1f Htr1eb - 16 C1.3|16 37.1 cM 5-hydroxytryptamine (serotonin) receptor 1F protein-coding 105246276 XR_876810 Runx2os3 Gm16317 - 17 B3|17 21.27 cM runt related transcription factor 2, opposite strand 3 ncRNA 100417265 Gm18491 - - 3|3 A3 BRCA1 associated RING domain 1 pseudogene pseudo 108379 Srev2 Srev-2 - - SWR/J-RF/J ecotropic provirus 2 other 230996 Mm.318925 NM_145557 ENSMUSG00000059939 9430015G10Rik - - 4|4 E2 RIKEN cDNA 9430015G10 gene protein-coding 54373 Mm.32043 NM_019429 ENSMUSG00000006179 Prss16 AI448615|TSSP - 13 A3.1|13 8.12 cM protease, serine 16 (thymus) protein-coding 27875 D17Ium1 - - 17 33.25 cM DNA segment, Chr 17, Indiana University Medical 1 unknown 101604 Mm.334241 NM_198011 ENSMUSG00000078580 E430018J23Rik AI480612 - 7|7 F3 RIKEN cDNA E430018J23 gene protein-coding 16737 L1Md-Tf5 - - - L1 repeat, Tf subfamily, member 5 other 100035516 Sox10m2 Agln1|Agln2 - - Sox10Dom modifier 2 unknown 53871 Mm.445792 NM_016927 ENSMUSG00000014503 Pkd2l2 TRPP5 - 18|18 B1 polycystic kidney disease 2-like 2 protein-coding 102632359 XR_386080 Gm30452 - - 18 A1|18 predicted gene, 30452 ncRNA 67819 Mm.289387 NM_024207 ENSMUSG00000022365 Derl1 1110021N07Rik|AI195141|AW551338|Derlin-1 - 15|15 D1 Der1-like domain family, member 1 protein-coding 100417318 Gm18529 - - 18|18 B3 RAD18 homolog pseudogene pseudo 105246167 XR_876265 Gm41501 - - 16 C4|16 predicted gene, 41501 ncRNA 105244574 XR_867699 Gm40167 - - 3 H2|3 predicted gene, 40167 ncRNA 52913 D10Bwg0134e - - 7 86.33 cM DNA segment, Chr 10, Brigham & Women's Genetics 0134 expressed unknown 77991 D730048M19Rik - - 6|6 RIKEN cDNA D730048M19 gene protein-coding 67292 Mm.45106 NM_026078 ENSMUSG00000026698 Pigc 3110030E07Rik|AW212108 - 1|1 H2.1 phosphatidylinositol glycan anchor biosynthesis, class C protein-coding 57261 Mm.253518 NM_020508 ENSMUSG00000024002 Brd4 Brd5|HUNK1|MCAP|WI-11513 - 17 B1|17 17.39 cM bromodomain containing 4 protein-coding 56461 Mm.315292 NM_019789 ENSMUSG00000079056 Kcnip3 4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849 - 2|2 F1 Kv channel interacting protein 3, calsenilin protein-coding 100416897 Gm18307 - - 7|7 B3 formyl peptide receptor 3 pseudogene pseudo 213575 Mm.246119 NM_172256 ENSMUSG00000024253 Dync2li1 4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC - 17|17 E4 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 19652 Mm.128512 NM_016809 ENSMUSG00000031167 Rbm3 2600016C11Rik - X A1.1|X 3.68 cM RNA binding motif (RNP1, RRM) protein 3 protein-coding 16660 Mm.439673 NM_010659 ENSMUSG00000048981 Krt31 Ha1|Kha1|Krt1-1|MKHA-1 - 11 D|11 63.39 cM keratin 31 protein-coding 110917 Lamr1-rs6 67kDa|P40-rs6 - - laminin receptor 1 (ribosomal protein SA), related sequence 6 protein-coding 102631991 XR_376954 Gm30178 - - 5 C1|5 predicted gene, 30178 ncRNA 100042130 XR_874551 Gm10376 - - 14|14 B predicted gene 10376 unknown 171256 Mm.377210 NM_134222 ENSMUSG00000115020 Vmn1r218 V1ri5 - 13|13 A3.1 vomeronasal 1 receptor 218 protein-coding 14043 Mm.4336 NM_010163 ENSMUSG00000027198 Ext2 AI893565 - 2 E1|2 51.62 cM exostoses (multiple) 2 protein-coding 72518 Mm.37454 NR_045053 2610307P16Rik AI666457 - 13|13 A3.1 RIKEN cDNA 2610307P16 gene ncRNA 102639978 XR_383334 Gm36164 - - 14 B|14 predicted gene, 36164 ncRNA 19633 Rb(9.14)6Bnr Rb6Bnr - - Robertsonian translocation, Chr 9 and 14, Universitat Bonn/Rhein 6 other 111144 Zfp86-rs2 - - - zinc finger protein 86, related sequence 2 pseudo 57314 Mm.271709 NM_020580 ENSMUSG00000016253 Nelfcd 2410003I03Rik|C77797|Th1|Th1l - 2|2 H4 negative elongation factor complex member C/D, Th1l protein-coding 102685 AU023386 - - - expressed sequence AU023386 protein-coding 14219 Mm.390287 NM_010217 ENSMUSG00000019997 Ctgf Ccn2|Fisp12|Hcs24|fisp-12 - 10 A4|10 11.84 cM connective tissue growth factor protein-coding 100039064 Rpl37a-ps3 Gm2029 - 9|9 A5.3 ribosomal protein L37a, pseudogene 3 pseudo 51797 Mm.1815 NM_016748 ENSMUSG00000028633 Ctps Ctps1 - 4 D2.2|4 56.52 cM cytidine 5'-triphosphate synthase protein-coding 233079 Mm.97338 NM_146187 ENSMUSG00000051314 Ffar2 GPCR43|Gpr43 - 7|7 B1 free fatty acid receptor 2 protein-coding 12640 Mm.1361 NM_009889 ENSMUSG00000028298 Cga CG-alpha|FSHA|GPHA1|GPHalpha|HCG|LHA|Tsha|aGSU|alpha-GSU|alphaGSU|alphaSU - 4 A5|4 16.86 cM glycoprotein hormones, alpha subunit protein-coding 627814 Mm.469852 NM_001104571 ENSMUSG00000090572 Vmn2r109 EG627814 - 17|17 A3.2 vomeronasal 2, receptor 109 protein-coding 79045 Tce3 - - - T-complex expressed gene 3 protein-coding 68194 Mm.379154 NM_026610 ENSMUSG00000022820 Ndufb4 0610006N12Rik|1300010H20Rik - 16|16 B3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4 protein-coding 100035622 Lith15 - - 13 18.48 cM lithogenic gene 15 unknown 330150 Mm.332550 A830011I04 - - 5|5 E5 uncharacterized protein A830011I04 protein-coding 27750 D2Dcr16 - - - DNA segment, Chr 2, Derry C. Roopenian 16 unknown 108168741 XR_001783249 Gm46732 - - 2 A3|2 predicted gene, 46732 ncRNA 667205 Gm8514 EG667205 - 14|14 A2 Rho GTPase activating protein 1 pseudogene pseudo 667852 Gm8844 EG667852 - X C1|X ATP-binding cassette, sub-family F (GCN20), member 1 pseudogene pseudo 102635552 NM_001346808 Gm32856 - - 8 E2|8 predicted gene, 32856 protein-coding 72774 Mm.35749 NM_028347 ENSMUSG00000032298 Neil1 2810450N13Rik|NEH1|Nei1 - 9|9 B nei endonuclease VIII-like 1 (E. coli) protein-coding 108169127 XR_001785187 Gm46948 - - 6 A1|6 predicted gene, 46948 ncRNA 230598 Mm.274950 NM_146150 ENSMUSG00000053510 Nrd1 2600011I06Rik|AI875733|NRD-C|Nrdc - 4|4 C7 nardilysin, N-arginine dibasic convertase, NRD convertase 1 protein-coding 114304 Mm.18188 NM_022317 ENSMUSG00000021553 Slc28a3 Cnt3 - 13|13 B1 solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 protein-coding 105245377 XR_872518 Gm40843 - - 12 A1.2|12 predicted gene, 40843 ncRNA 60814 D4Mit47 - - 4 57.42 cM DNA segment, Chr 4, Massachusetts Institute of Technology 47 unknown 13072 Mm.377079 NM_009991 ENSMUSG00000022589 Cyp11b2 Cpn2|Cyp11b|Cyp11b-2 - 15 D3|15 34.29 cM cytochrome P450, family 11, subfamily b, polypeptide 2 protein-coding 102634998 Gm32447 - - Y|Y predicted gene, 32447 pseudo 100417377 Gm18576 - - 14|14 A1 zinc finger, AN1-type domain 5 pseudogene pseudo 434047 Gm5575 EG434047 - 5|5 A3 heat shock protein 8 pseudogene pseudo 239036 Mm.239970 NM_001033766 ENSMUSG00000041068 4930596D02Rik - - 14|14 B RIKEN cDNA 4930596D02 gene protein-coding 108167945 Gm46305 - - 12 A1.3|12 predicted gene, 46305 pseudo 319887 Mm.177746 NM_001254744 ENSMUSG00000097327 E030030I06Rik - - 10|10 A3 RIKEN cDNA E030030I06 gene protein-coding 110285 Foc1 - - - follicular center cell lymphoma 1 protein-coding 102637295 Gm29337 - - 1|1 predicted gene 29337 ncRNA 105416 D14Mgi10 AA414909 - - DNA Segment, Chr 14, Mouse Genome Informatics 10 unknown 16743 l1Rk1 l(1)-1Rk - - lethal, Chr 1, Roderick 1 unknown 16389 Is(In7;X)1Ct Flecked|Is1Ct|T(X;7)1Ct|T1Ct|fd - - insertion, inverted Chr 7 piece into Chr X, Cattanach 1 other 51869 Mm.254530 NM_175238 ENSMUSG00000036202 Rif1 5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e - 2 C1.1|2 29.98 cM replication timing regulatory factor 1 protein-coding 12761 cma - - - cardiac myosin autoantibody unknown 61758 D4Mit237a D4Mit237 - 4 22.38 cM DNA segment, Chr 4, Massachusetts Institute of Technology 237a protein-coding 218304 XM_006517492 ENSMUSG00000090658 Prss47 Gm274 - 13|13 B3 protease, serine 47 protein-coding 22411 Mm.22182 NM_009519 ENSMUSG00000015957 Wnt11 - - 7 E1|7 53.9 cM wingless-type MMTV integration site family, member 11 protein-coding 102632606 XR_384873 Gm30636 - - 16 B5|16 predicted gene, 30636 ncRNA 102635167 XR_876969 Gm32573 - - 17 E3|17 predicted gene, 32573 ncRNA 108168698 XM_017318956 LOC108168698 V1rg1 - - vomeronasal type-1 receptor 4-like protein-coding 67115 Mm.289810 NM_025974 ENSMUSG00000025794 Rpl14 3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14 - 9|9 F4 ribosomal protein L14 protein-coding 71761 Mm.244518 NM_027908 ENSMUSG00000015890 Amdhd1 1300019J08Rik - 10|10 C2 amidohydrolase domain containing 1 protein-coding 328385 Mm.271545 NR_131909 ENSMUSG00000115015 D330046F09Rik Gm808 - 14|14 C1 RIKEN cDNA D330046F09 gene ncRNA 73596 Mm.82793 1700112K13Rik - - 4|4 RIKEN cDNA 1700112K13 gene ncRNA 108169089 Gm15546 - - 5 F|5 61.82 cM mitogen-activated protein kinase 3 pseudogene pseudo 100418483 Gm19241 - - 19|19 C1 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene pseudo 246729 Mm.115351 NM_145228 ENSMUSG00000001168 Oas1h - - 5 F|5 60.64 cM 2'-5' oligoadenylate synthetase 1H protein-coding 107963957 Sox10-mcs7 DCHCS-1|MCS7|U1 - - Sox10 multiple-species conserved sequence 7 biological-region 105244147 XR_866199 Gm39812 - - 2 C1.1|2 predicted gene, 39812 ncRNA 230972 Mm.38481 NM_001112744 ENSMUSG00000029032 Arhgef16 - - 4|4 E2 Rho guanine nucleotide exchange factor (GEF) 16 protein-coding 74269 Mm.81022 NR_152109 ENSMUSG00000040657 1700063H04Rik - - 6|6 F1 RIKEN cDNA 1700063H04 gene ncRNA 544678 Mm.472798 NM_177674 ENSMUSG00000078490 Cfap74 2010015L04Rik|A530045M11 - 4|4 E2 cilia and flagella associated protein 74 protein-coding 100123473 Trdc Tcrd-C - 14 C2|14 27.66 cM T cell receptor delta, constant region other 110290 Tel2q - - - telomeric sequence, Chr 2, q arm protein-coding 104457 Mm.30016 NM_026757 ENSMUSG00000020831 0610010K14Rik 1110020A23Rik|AL033328|AU045833|Bap18 - 11|11 B3 RIKEN cDNA 0610010K14 gene protein-coding 70097 Mm.338275 NM_175155 ENSMUSG00000015305 Sash1 1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790 - 10|10 A1 SAM and SH3 domain containing 1 protein-coding 100418111 Gm19005 - - 10|10 D1 S-adenosylmethionine decarboxylase, pseudogene 3 pseudogene pseudo 102631913 Gm21795 - - Y|Y predicted gene, 21795 protein-coding 493109 Nhdlq3 - - 17 59.77 cM non-HDL QTL 3 unknown 108169144 LOC108169144 - - 6 B3 60S ribosomal protein L29 pseudogene pseudo 100051 AI225779 - - - expressed sequence AI225779 unknown 27936 D3Nds2 - - 3 61.33 cM DNA segment, Chr 3, Nuffield Department of Surgery 2 unknown 100505034 XR_387382 Gm29695 - - 1 E4|1 predicted gene, 29695 ncRNA 108168592 XM_017318798 LOC108168592 - - Y D Y-linked testis-specific protein 1-like protein-coding 108167858 XM_017314873 Gm46257 - - 11 B2|11 predicted gene, 46257 protein-coding 245020 Mm.236289 NM_001101483 ENSMUSG00000070287 Slc35g2 Gm519|Tmem22 - 9|9 E3.3 solute carrier family 35, member G2 protein-coding 102636346 XR_001779651 Gm33439 - - 10 D2|10 predicted gene, 33439 ncRNA 108168004 LOC108168004 - - 12 C2 chloride intracellular channel protein 4 pseudogene pseudo 108097 Mm.31175 NM_182997 ENSMUSG00000038205 Prkab2 5730553K21Rik|AW049591|BB124140 - 3|3 F2.2 protein kinase, AMP-activated, beta 2 non-catalytic subunit protein-coding 100035352 Org10 ORG17.2 - 17 17.98 cM organ weight 10 unknown 320151 5330432J10Rik - - - RIKEN cDNA 5330432J10 gene protein-coding 21295 T(X;12)13Rl T13Rl - - reciprocal translocation, Chr X and 12, Russell 13 other 100287 Mm.413440 AU019176 - - - expressed sequence AU019176 protein-coding 75526 Mm.159533 NM_029325 ENSMUSG00000017733 Eppin 1700024E17Rik|Spinlw1 - 2|2 H3 epididymal peptidase inhibitor protein-coding 100043801 Gm4657 - - 9 F3|9 predicted gene 4657 ncRNA 100417863 Gm18868 - - 16|16 A1 DEAH (Asp-Glu-Ala-His) box polypeptide 15 pseudogene pseudo 320354 Mm.445875 NM_001242940 Grin1os E130003G02Rik - 2|2 A3 glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand protein-coding 229949 Mm.207057 NM_001081277 ENSMUSG00000039058 Ak5 - - 3|3 H3 adenylate kinase 5 protein-coding 66411 Mm.27947 NM_025548 ENSMUSG00000006095 Tbcb 2410007D12Rik|AU041393|CG22|CKAPI|Ckap1 - 7|7 B1 tubulin folding cofactor B protein-coding 77938 Mm.225649 NM_175268 ENSMUSG00000030956 Fam53b A930008G19Rik|mKIAA0140 - 7|7 F3 family with sequence similarity 53, member B protein-coding 100862037 Gm21420 - - X A3.1|X predicted gene, 21420 pseudo 68833 Mm.28121 NM_026850 ENSMUSG00000026078 Pdcl3 1110061A19Rik|C80025|Viaf1 - 1|1 B phosducin-like 3 protein-coding 232791 Mm.358731 NM_146176 ENSMUSG00000035632 Cnot3 A930039N10Rik - 7|7 A1 CCR4-NOT transcription complex, subunit 3 protein-coding 108167524 XR_001778522 Gm46033 - - 8 A1.1|8 predicted gene, 46033 ncRNA 102636765 XR_379069 Gm33746 - - 8 B3.3|8 predicted gene, 33746 ncRNA 70729 Mm.409310 NM_027528 ENSMUSG00000038473 Nos1ap 6330408P19Rik|Capon - 1|1 H3 nitric oxide synthase 1 (neuronal) adaptor protein protein-coding 238205 Mm.28802 NM_178714 ENSMUSG00000035653 Lrfn5 AI427653|AI604817|C130061B21|mKIAA4208 - 12|12 C1 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 100504189 Gm20104 - - 5|5 E1 WD repeat domain 12 pseudogene pseudo 60885 D7Mit67 - - 7 70.15 cM DNA segment, Chr 7, Massachusetts Institute of Technology 67 unknown 13368 Mm.388918 NM_007859 ENSMUSG00000029027 Dffb 40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff - 4|4 E2 DNA fragmentation factor, beta subunit protein-coding 102642605 Gm38617 - - 18|18 high mobility group protein B2 pseudogene pseudo 100039987 Gm14580 - - X|X A4 predicted gene 14580 pseudo 406219 Mm.347934 NM_001003668 ENSMUSG00000047641 Krt87 K83|K87|Krt2-25|Krt83 - 15|15 F2 keratin 87 protein-coding 61536 D9Mit100 - - 9 29.84 cM DNA segment, Chr 9, Massachusetts Institute of Technology 100 unknown 109545 Crm - - - cream unknown 100040508 Gm2815 - - 9 A2|9 predicted gene 2815 pseudo 20497 Mm.25804 NM_019415 ENSMUSG00000031766 Slc12a3 AI035291|NCC|NCCT|TSC - 8 C5|8 46.46 cM solute carrier family 12, member 3 protein-coding 100035073 W10q13 - - - weight 10 weeks QTL 13 unknown 102638020 XR_374585 Gm34688 - - 2 C1.3|2 predicted gene, 34688 ncRNA 105242978 XR_882235 Gm39038 Gm44606 - 7 D2|7 predicted gene, 39038 ncRNA 666030 Gm7898 EG666030 - 17 A3.3|17 ATPase, H+ transporting, lysosomal V1 subunit G1 pseudogene pseudo 665556 Gm7686 EG665556 - 15|15 A1 predicted gene 7686 pseudo 102638052 Mm.407918 XR_374832 ENSMUSG00000086957 Gm13869 - - 2 E2|2 54.41 cM predicted gene 13869 ncRNA 100316772 NR_035437 ENSMUSG00000084747 Mir1899 Mirn1899|mmu-mir-1899 - 9 A1|9 2.46 cM microRNA 1899 ncRNA 105180383 A230095H09Rik - - - Riken cDNA A230095H09 gene protein-coding 102634509 XR_379595 Gm32074 - - 9 D|9 predicted gene, 32074 ncRNA 102467317 n-TGtcc4 n-Tg23 - 1 H3|1 nuclear encoded tRNA glycine 4 (anticodon TCC) tRNA 109664 Mod1r - - - malic enzyme, regulator protein-coding 319431 Mm.443240 E030032P16Rik - - 5|5 RIKEN cDNA E030032P16 gene protein-coding 237397 Mm.334207 NM_198614 ENSMUSG00000045912 C2cd4c 4932409I22Rik|Fam148c|Gm238 - 10|10 C1 C2 calcium-dependent domain containing 4C protein-coding 105246311 XR_876936 Gm41613 - - 17 E1.3|17 predicted gene, 41613 ncRNA 676369 Mm.388439 Gm14340 - - 2 H4|2 predicted gene 14340 unknown 20264 Mm.247042 NM_009134 ENSMUSG00000034533 Scn10a Nav1.8|PN3|SNS - 9 F3|9 71.33 cM sodium channel, voltage-gated, type X, alpha protein-coding 666202 Mm.465057 NR_040408 ENSMUSG00000103257 Gm7977 EG666202 - 3|3 C tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene pseudo 360094 D17Jcs48 - - - DNA segment, Chr 17, John C. Schimenti 48 unknown 62270 D19Mit23 - - 19 13.85 cM DNA segment, Chr 19, Massachusetts Institute of Technology 23 unknown 102635577 XR_390866 Gm32871 - - 4 D3|4 predicted gene, 32871 ncRNA 24013 Mm.257501 NM_011881 ENSMUSG00000031450 Grk1 Gprk1|Rhok|Rk - 8|8 A1.1 G protein-coupled receptor kinase 1 protein-coding 72722 Mm.24641 NM_133747 ENSMUSG00000002017 Fam98a 2810405J04Rik|AL024114 - 17|17 E2 family with sequence similarity 98, member A protein-coding 108227 Hmgb1-rs22 Hmg1-rs22 - - high mobility group box 1, related sequence 22 pseudo 69311 Mm.46140 NR_038141 ENSMUSG00000101012 1700008K24Rik - - 17|17 C RIKEN cDNA 1700008K24 gene ncRNA 53651 D7J5 D0J3 - - DNA segment, Chr 7, Jackson Laboratory 5 unknown 102640257 Gm36369 - - 10|10 predicted gene, 36369 ncRNA 213773 Mm.100353 NM_145396 ENSMUSG00000040688 Tbl3 9430070M15Rik - 17|17 A3.3 transducin (beta)-like 3 protein-coding 102631611 XR_384959 Gm29908 - - 16 C3.1|16 predicted gene, 29908 ncRNA 14238 Mm.125548 NM_010225 ENSMUSG00000038402 Foxf2 FREAC2|Fkh20|LUN - 13|13 A3.2 forkhead box F2 protein-coding 241612 Mm.277148 NM_001003915 ENSMUSG00000041644 Slc5a12 AI315119|D630015G19|SMCT2 - 2|2 E3 solute carrier family 5 (sodium/glucose cotransporter), member 12 protein-coding 241525 Mm.486398 NM_001005342 ENSMUSG00000034059 Ypel4 - - 2|2 D yippee like 4 protein-coding 102632344 XR_384503 Gm28876 Gm10830 - 15 F3|15 predicted gene 28876 ncRNA 75914 Mm.159621 NM_177077 ENSMUSG00000033769 Exoc6b 4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919 - 6|6 C3 exocyst complex component 6B protein-coding 432486 Mm.335190 NM_001004164 ENSMUSG00000035311 Gnptab EG432486|mKIAA1208 - 10|10 C1 N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits protein-coding 105246044 XR_875679 Gm41404 - - 15 F2|15 predicted gene, 41404 ncRNA 100503920 Gm19965 - - 1|1 52.1 cM zinc finger protein 234-like pseudo 73324 Mm.69388 NM_028504 ENSMUSG00000020461 Clhc1 1700034F02Rik - 11|11 A3.3 clathrin heavy chain linker domain containing 1 protein-coding 100417272 Gm18496 - - 16|16 C2 crumbs homolog 1 pseudogene pseudo 545208 Gm5814 EG545208 - 17|17 C Morf4 family associated protein 1 pseudogene pseudo 20522 Mm.22702 NM_011397 ENSMUSG00000024354 Slc23a1 D18Ucla2|SVCT1|Slc23a2|YSPL3 - 18 B2|18 19.17 cM solute carrier family 23 (nucleobase transporters), member 1 protein-coding 102637972 XR_870635 Gm34652 - - 9 A4|9 predicted gene, 34652 ncRNA 102642652 XR_871310 Gm38623 - - 9 F3|9 predicted gene, 38623 ncRNA 623913 Gm6461 EG623913 - X|X E1 high mobility group box 1-like pseudogene pseudo 667933 Mm.491076 NR_026561 Gm8884 EG667933 - 9|9 A5.3 predicted gene 8884 ncRNA 104111 Mm.489807 NM_138305 ENSMUSG00000020654 Adcy3 AC3|mKIAA0511 - 12|12 A1.1 adenylate cyclase 3 protein-coding 100135765 Mm.490374 NM_178904 LOC100135765 - - 9|9 D uncharacterized LOC100135765 unknown 112067 Livq2 - - - percent liver QTL 2 unknown 60874 D6Mit76 - - 6 21.39 cM DNA segment, Chr 6, Massachusetts Institute of Technology 76 unknown 110236 Igh-Sa3 - - - immunoglobulin heavy chain Sa3 protein-coding 258893 Mm.377737 NM_146891 ENSMUSG00000101918 Olfr1225 MOR233-11 - 2|2 E1 olfactory receptor 1225 protein-coding 17698 Mm.138876 NM_010833 ENSMUSG00000031207 Msn C78546 - X|X C3 moesin protein-coding 210510 Mm.329058 NM_198418 ENSMUSG00000040140 Tdrd6 AB097085|Tdr2 - 17|17 B3 tudor domain containing 6 protein-coding 16296 In(5)9Rk-p In(5)9Rk|In9Rk - - inversion, Chr 5, Roderick 9, proximal other 100417460 Gm18622 - - 12|12 A3 coiled-coil domain containing 69 pseudogene pseudo 100503907 Mm.484348 Gm19955 - - 16|16 6.29 cM predicted gene, 19955 unknown 15284 Mm.1347 NM_008250 ENSMUSG00000039377 Hlx Hlx1 - 1 H5|1 88.97 cM H2.0-like homeobox protein-coding 102640855 Mm.402152 XR_389703 Gm36823 Gm43536 - 3 B|3 predicted gene, 36823 ncRNA 100416884 Gm18302 - - 1|1 H1 mortality factor 4 like 1 pseudogene pseudo 100124460 NR_030539 ENSMUSG00000078038 Mir881 Mirn881|mir-881|mmu-mir-881 - X A7.1|X microRNA 881 ncRNA 108153 Mm.102141 NM_001003911 ENSMUSG00000032363 Adamts7 ADAM-TS7|ADAMTS7B - 9|9 E3.1 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7 protein-coding 73283 Mm.489084 NR_040542 ENSMUSG00000099995 1700036G14Rik - - 3|3 F1 RIKEN cDNA 1700036G14 gene ncRNA 105245094 XR_871419 Gm40592 - - 10 A1|10 predicted gene, 40592 ncRNA 108167420 XR_001778110 Gm45981 - - 7 B3|7 predicted gene, 45981 ncRNA 215015 Mm.229107 NM_145413 ENSMUSG00000033557 Fam20b C530043G21Rik|mKIAA0475 - 1|1 G3 family with sequence similarity 20, member B protein-coding 105245765 Gm41163 - - 14|14 predicted gene, 41163 ncRNA 724106 Igkv13-57-2 - - 6|6 C1 immunoglobulin kappa variable 13-57-2 pseudo 271697 Mm.297713 NM_001033373 ENSMUSG00000026023 Cdk15 Als2cr7|Pftk2 - 1|1 C1.3 cyclin-dependent kinase 15 protein-coding 668816 Gm9378 EG668816 - 11|11 C predicted gene 9378 pseudo 102633843 Gm31572 - - Y|Y predicted gene, 31572 protein-coding 100039054 Mm.482236 NM_001199995 ENSMUSG00000094793 Mup12 Gm2024 - 4 B3|4 major urinary protein 12 protein-coding 546648 NM_001160178 ENSMUSG00000091680 Klhdc7b EG546648|Gm306 - 15|15 E3 kelch domain containing 7B protein-coding 61301 D3Mit105 - - 3 47.13 cM DNA segment, Chr 3, Massachusetts Institute of Technology 105 unknown 58223 Mm.131266 NM_021412 ENSMUSG00000025355 Mmp19 - - 10 D3|10 77.16 cM matrix metallopeptidase 19 protein-coding 628877 Mm.363120 NR_131147 ENSMUSG00000112910 Gm29685 - - 10|10 D1 predicted gene, 29685 ncRNA 218693 Mm.490243 NM_145457 ENSMUSG00000025451 Paip1 PAIP-1 - 13|13 D2.3 polyadenylate binding protein-interacting protein 1 protein-coding 97010 C81285 - - - expressed sequence C81285 unknown 74580 Mm.329858 NM_029011 ENSMUSG00000060224 Pyroxd2 3830409H07Rik|4833409A17Rik - 19|19 C3 pyridine nucleotide-disulphide oxidoreductase domain 2 protein-coding 102637351 XR_386617 Gm34186 - - 19 B|19 predicted gene, 34186 ncRNA 544719 NM_001204920 Gm5780 EG544719 - 10|10 C2 predicted gene 5780 pseudo 106296 Mm.400214 AL022871 - - - expressed sequence AL022871 unknown 111995 Insq4 - - 10 54.72 cM insulin QTL 4 unknown 624483 Gm6507 EG624483 - 6|6 D1 predicted gene 6507 protein-coding 108168575 XM_017318779 LOC108168575 - - Y C2 Y-linked testis-specific protein 1-like protein-coding 107197956 LOC107197956 - - - origin of replication upstream of Myc biological-region 319197 Mm.135984 NM_175668 ENSMUSG00000044317 Gpr4 - - 7|7 A3 G protein-coupled receptor 4 protein-coding 61076 D2Mit312 - - 2 1.81 cM DNA segment, Chr 2, Massachusetts Institute of Technology 312 unknown 21441 tclTuw2 tcl-Tuw2 - - t-complex lethal Tuw2 unknown 18540 Pcna-ps2 - - 19 A|19 6.08 cM proliferating cell nuclear antigen pseudogene 2 pseudo 665083 Gm7482 EG665083 - 7|7 C ribosomal protein S11 pseudogene pseudo 56858 Mm.103732 NM_020288 ENSMUSG00000059069 Olfr749 MOR106-1|ORL461|Ors1 - 14|14 C1 olfactory receptor 749 protein-coding 75804 NR_108059 ENSMUSG00000020033 4930463O16Rik - - 10|10 C1 RIKEN cDNA 4930463O16 gene ncRNA 216393 Mm.119759 NM_177335 ENSMUSG00000047642 D930020B18Rik 1500017I17Rik - 10|10 D2 RIKEN cDNA D930020B18 gene protein-coding 66952 Mm.273375 NM_025865 ENSMUSG00000032062 2310030G06Rik 2610024D04Rik|AV017521 - 9|9 A5.3 RIKEN cDNA 2310030G06 gene protein-coding 383295 Mm.277533 NM_027166 ENSMUSG00000039770 Ypel5 2310076K21Rik|CGI-127 - 17|17 E1.3 yippee like 5 protein-coding 109401 Pact1 - - 3 29.17 cM platelet activation 1 unknown 665703 Gm11284 - - 13|13 A3.1 Ewing's tumor-associated antigen 1 pseudogene pseudo 14109 Mm.329631 NM_007990 ENSMUSG00000038274 Fau MNSFbeta - 19 A|19 4.34 cM Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived) protein-coding 102637264 XR_388581 ENSMUSG00000085301 Gm12132 - - 11 A5|11 24.2 cM predicted gene 12132 ncRNA 100043182 Gm14563 - - X|X A2 predicted gene 14563 pseudo 100862177 Mm.407493 NM_001270360 ENSMUSG00000094065 Gm21541 - - 4 A5|4 predicted gene, 21541 protein-coding 69631 Mm.414996 NR_040714 ENSMUSG00000101304 Plet1os 2310014F07Rik - 9|9 A5.3 placenta expressed transcript 1, opposite strand ncRNA 18287 oe - - - open eyelids unknown 75286 Mm.307315 NR_045376 4930549G23Rik - - 18|18 E1 RIKEN cDNA 4930549G23 gene ncRNA 110120442 LOC110120442 - - - VISTA enhancer mm1603 biological-region 100042484 Mm.236802 XR_388171 4732419C18Rik Gm3866 - 8 E1|8 RIKEN cDNA 4732419C18 gene ncRNA 100040789 Gm16428 EG666066 - X|X A5 predicted gene 16428 pseudo 16535 Mm.439769 NM_008434 ENSMUSG00000009545 Kcnq1 AW559127|KVLQT1|Kcna9 - 7 F5|7 88.12 cM potassium voltage-gated channel, subfamily Q, member 1 protein-coding 171234 Mm.405416 NM_134200 ENSMUSG00000058030 Vmn1r237 V1rf3|Vfrf3 - 17|17 A3.2 vomeronasal 1 receptor 237 protein-coding 103737 Mm.102205 NM_134025 ENSMUSG00000018733 Pex12 AI451906 - 11|11 C peroxisomal biogenesis factor 12 protein-coding 102638408 XR_391202 Gm16174 - - 7 A3|7 9.95 cM predicted gene 16174 ncRNA 215814 Mm.296565 NM_144820 ENSMUSG00000059554 Ccdc28a 1700009P13Rik|AI480677 - 10|10 A3 coiled-coil domain containing 28A protein-coding 105243571 XR_871370 Gm39458 - - 9 F4|9 predicted gene, 39458 ncRNA 780862 Ighv10-4 - - 12|12 F2 immunoglobulin heavy variable V10-4 pseudo 68970 Mm.28891 NM_026893 ENSMUSG00000028436 Dcaf12 1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a - 4|4 A5 DDB1 and CUL4 associated factor 12 protein-coding 108167779 Gm46197 - - 10 A4|10 40S ribosomal protein S18 pseudogene pseudo 102635891 XR_391913 ENSMUSG00000100790 Gm28518 - - Y B|Y predicted gene 28518 ncRNA 113846 Mm.377143 NM_053219 ENSMUSG00000060724 Vmn1r47 V1RA7|V1ra4 - 6|6 D1 vomeronasal 1 receptor 47 protein-coding 74858 4930451E06Rik - - 4|4 RIKEN cDNA 4930451E06 gene protein-coding 107739 Adre - - - age at disappearance of rooting response protein-coding 100042660 Gm3953 - - 9 A5.2|9 NSA2 ribosome biogenesis homolog pseudogene pseudo 666601 Gm8184 EG666601 - 19 A|19 calpastatin pseudogene pseudo 382161 Mm.436630 Gm5165 EG382161 - 17|17 A3.1 predicted gene 5165 protein-coding 100036294 Eae35 - - - experimental allergic encephalomyelitis susceptibility 35 unknown 101056111 Gm29411 - - Y|Y predicted gene 29411 protein-coding 67026 Mm.272356 NM_025920 ENSMUSG00000026279 Thap4 2010320B01Rik - 1|1 D THAP domain containing 4 protein-coding 19620 Rb(8.17)38Lub Rb38Lub - - Robertsonian translocation, Chr 8 and 17, Lubeck 38 other 493176 Vtbt2 - - 1 67.71 cM vertebral trabecular bone trait 2 unknown 71793 Mm.246726 NM_027927 ENSMUSG00000028016 Ints12 1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22|int12 - 3|3 G3 integrator complex subunit 12 protein-coding 666609 Gm8186 EG666609 - 17|17 A3.3 small nuclear ribonucleoprotein polypeptide G pseudogene pseudo 61676 D6Mit291 - - 6 66.78 cM DNA segment, Chr 6, Massachusetts Institute of Technology 291 unknown 100503447 Mm.215578 XR_105866 Gm19696 - - 17 E4|17 55.0 cM predicted gene, 19696 ncRNA 100417369 Gm18568 - - 14|14 A1 ubiquitin specific peptidase 7 pseudogene pseudo 74873 Mm.84387 4930443G03Rik Gm44273 - 6|6 RIKEN cDNA 4930443G03 gene protein-coding 100040092 Gm14984 - - X|X E3 predicted gene 14984 pseudo 12802 Mm.297251 NM_009924 ENSMUSG00000062585 Cnr2 CB-2|CB2|CB2-R - 4|4 D3 cannabinoid receptor 2 (macrophage) protein-coding 102635846 XR_374024 Gm33085 - - 2 A3|2 predicted gene, 33085 ncRNA 102635597 XR_379060 Gm32888 - - 8 B3.2|8 predicted gene, 32888 ncRNA 62503 D10Mit165 - - 10 61.82 cM DNA segment, Chr 10, Massachusetts Institute of Technology 165 unknown 665810 Gm7798 EG665810 - 19 A|19 Crn, crooked neck-like 1 pseudogene pseudo 74909 Mm.390651 NR_152116 ENSMUSG00000114879 4930467J12Rik - - 13|13 D2.2 RIKEN cDNA 4930467J12 gene ncRNA 226896 Mm.244858 NM_153154 ENSMUSG00000042596 Tfap2d Tcfap2d - 1|1 A3 transcription factor AP-2, delta protein-coding 102634494 XR_001780915 Gm32063 - - 13 A3.3|13 predicted gene, 32063 ncRNA 110956 Mm.22506 NM_033075 D17H6S56E-5 G7e - 17 B1|17 18.54 cM DNA segment, Chr 17, human D6S56E 5 protein-coding 627777 Trav17 - - 14|14 C2 T cell receptor alpha variable 17 other 100534281 Gm21012 - - 4|4 E1 PRAME family member 6 pseudogene pseudo 102637559 XR_384195 Gm28114 - - 15 D3|15 predicted gene 28114 ncRNA 12655 Mm.387173 NM_009892 ENSMUSG00000040809 Chil3 AI505981|Chi3l3|ECF-L|Ym1 - 3 F2.2|3 46.49 cM chitinase-like 3 protein-coding 75912 4930572P05Rik - - 16|16 RIKEN cDNA 4930572P05 gene protein-coding 97799 C78242 - - - expressed sequence C78242 unknown 404463 Olfr1064-ps1 - - 2|2 D olfactory receptor 1064, pseudogene 1 pseudo 108167465 XR_001778314 Gm46004 - - 7 F4|7 predicted gene, 46004 ncRNA 71206 Mm.35803 NM_027721 ENSMUSG00000025420 Katnal2 3110023G01Rik|4933439B08Rik - 18|18 E3 katanin p60 subunit A-like 2 protein-coding 100043933 Gm4725 - - X|X A1.1 RNA binding protein with multiple splicing 2 pseudogene pseudo 71316 Mm.79162 NR_045857 ENSMUSG00000086892 4933430M04Rik - - 11|11 A3.2 RIKEN cDNA 4933430M04 gene ncRNA 16375 Is(1;11)2H Is2H - - insertion, Chr 1 and 11, Harwell 2 other 100416923 Gm18324 - - 11|11 A3.3 transmembrane protein 85 pseudogene pseudo 668540 Gm9230 EG668540 - 7 B3|7 predicted gene 9230 pseudo 545925 Mm.440302 NM_001037168 ENSMUSG00000070797 Psg27 EG545925|cea15 - 7|7 A3 pregnancy-specific glycoprotein 27 protein-coding 102639335 XR_382031 Gm35671 - - 13 A1|13 predicted gene, 35671 ncRNA 100417745 Gm18800 - - 1|1 C1.1 ankyrin and armadillo repeat containing pseudogene pseudo 100416514 Gm18138 - - 17|17 E1.1 ribosomal protein L18 pseudogene pseudo 243461 Igkv7-33 Igk-V22|U29423|vk22/Jk5 - 6|6 C1 immunoglobulin kappa chain variable 7-33 other 110250 Hvmt1 - - - heavy metal tolerance protein 1 protein-coding 20855 Mm.20911 NM_009285 ENSMUSG00000014813 Stc1 Stc - 14|14 D2 stanniocalcin 1 protein-coding 102634798 XR_382107 Gm32298 - - 13 A2|13 predicted gene, 32298 ncRNA 639456 Gm7266 EG639456 - 1 F|1 predicted gene 7266 pseudo 68463 Mm.379158 NM_026732 ENSMUSG00000023939 Mrpl14 1110006I11Rik|AI846816|MRP-L32|Rpml32 - 17|17 B3 mitochondrial ribosomal protein L14 protein-coding 140650 Leg1 - - - longevity extending gene 1 unknown 270120 Mm.195010 NM_001080814 ENSMUSG00000074505 Fat3 9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F - 9|9 A2 FAT atypical cadherin 3 protein-coding 216274 Mm.229114 NM_146009 ENSMUSG00000019971 Cep290 BC004690|Nphp6|b2b1454Clo|b2b1752Clo - 10 D1|10 51.48 cM centrosomal protein 290 protein-coding 216724 Mm.390400 NM_172557 ENSMUSG00000020375 Rufy1 3000002E04Rik|Rabip4|ZFYVE12 - 11|11 B1.3 RUN and FYVE domain containing 1 protein-coding 100041856 Gm3547 - - 17|17 A3.2 predicted gene 3547 pseudo 492923 Ssial1 - - 1 47.76 cM susceptibility to sialadenitis 1 unknown 435207 Mm.377966 NM_001010839 ENSMUSG00000100950 Taar7f taR-7f - 10|10 A4 trace amine-associated receptor 7F protein-coding 71886 Mm.158769 NM_027104 ENSMUSG00000028396 2310002L09Rik 2310003M01Rik|AV083437 - 4|4 C3 RIKEN cDNA 2310002L09 gene protein-coding 108167701 Gm46140 - - 9 E4|9 predicted gene, 46140 pseudo 213527 Mm.294225 NM_139270 ENSMUSG00000025946 Pth2r Pthr2 - 1 C2-C3|1 33.05 cM parathyroid hormone 2 receptor protein-coding 105243462 XR_870940 Gm39378 - - 9 E1|9 predicted gene, 39378 ncRNA 71180 4933416E14Rik - - X|X A1.1 ferritin light chain pseudogene pseudo 620248 Gm6139 EG620248 - 5 G1.3|5 predicted gene 6139 protein-coding 102640268 Mm.350858 XR_001781484 Gm2956 100040767|Gm36379 - 14 A1|14 predicted gene 2956 protein-coding 102635689 Gm28212 - - Y|Y predicted gene 28212 ncRNA 66441 Mm.46623 NM_025564 ENSMUSG00000030188 Magohb 2010012C16Rik|Mago|Magoh|Magoh-rs1 - 6 F3|6 mago homolog B, exon junction complex core component protein-coding 106954 Mm.443713 AI851613 - - - expressed sequence AI851613 protein-coding 60891 D7Mit85 - - 7 32.8 cM DNA segment, Chr 7, Massachusetts Institute of Technology 85 unknown 100042168 Mm.489575 NM_001243001 ENSMUSG00000078218 Btbd35f3 Gm3706 - X A1.1|X BTB domain containing 35, family member 3 protein-coding 62498 D10Mit145 - - 10 72.35 cM DNA segment, Chr 10, Massachusetts Institute of Technology 145 unknown 11831 Mm.202309 NM_175087 ENSMUSG00000043144 Aqp6 AI790337 - 15 F1|15 56.13 cM aquaporin 6 protein-coding 16875 Mm.15530 NM_010713 ENSMUSG00000096225 Lhx8 L3|Lhx7 - 3|3 H4 LIM homeobox protein 8 protein-coding 66479 Mm.390629 NM_025585 ENSMUSG00000052075 1700029F12Rik - - 13|13 D1 RIKEN cDNA 1700029F12 gene protein-coding 104871 Mm.210053 NM_178914 ENSMUSG00000021007 Spata7 AI661438|B230306G18Rik|HSD3 - 12|12 E spermatogenesis associated 7 protein-coding 78469 Mm.67234 NM_030104 ENSMUSG00000037689 Tmem247 1700090G07Rik - 17|17 E4 transmembrane protein 247 protein-coding 102638917 Mm.416414 XR_378381 Gm35363 Gm45599 - 7 E2|7 predicted gene, 35363 ncRNA 100039003 Gm2005 - - X A2|X predicted pseudogene 2005 pseudo 110214 Aod1 - - 16 22.55 cM autoimmune ovarian dysgenesis 1 unknown 22214 Mm.332967 NM_009459 ENSMUSG00000039159 Ube2h 1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8 - 6 A3.3|6 12.52 cM ubiquitin-conjugating enzyme E2H protein-coding 668038 Gm8940 EG668038 - 8|8 D3 predicted gene 8940 pseudo 108168043 XR_001780832 LOC108168043 - - 13 B3 zinc finger protein 431-like pseudo 230594 Mm.25181 NM_175472 ENSMUSG00000034610 Zcchc11 6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191 - 4|4 C7 zinc finger, CCHC domain containing 11 protein-coding 240131 Mm.295736 NM_001033340 ENSMUSG00000073375 Lrrc30 Gm326 - 17|17 E1.1 leucine rich repeat containing 30 protein-coding 404426 Olfr778-ps1 - - 10|10 D3 olfactory receptor 778, pseudogene 1 pseudo 105245412 XR_872613 Gm40872 - - 12 A2|12 predicted gene, 40872 ncRNA 636808 Mm.101576 NM_001077425 ENSMUSG00000070695 Cntnap5a Caspr5-1|EG636808 - 1|1 E2.3 contactin associated protein-like 5A protein-coding 433428 NM_001013801 LOC433428 - - 2|2 C1.1 uncharacterized LOC433428 unknown 18971 Mm.16549 NM_011131 ENSMUSG00000038644 Pold1 125kDa - 7 B3|7 28.83 cM polymerase (DNA directed), delta 1, catalytic subunit protein-coding 102635594 Mm.392594 NR_155278 ENSMUSG00000116295 Gm32885 - - 15 F1|15 predicted gene, 32885 ncRNA 20146 rs gc|grc - - recessive spotting unknown 53692 D1Dcw37 D1H37|H37 - - DNA segment, Chr 1, D. C. Ward 37 unknown 100579147 Mm.109205 NR_077222 ENSMUSG00000074067 Gm10619 4932443D20 - 7 D1|7 42.25 cM predicted gene 10619 ncRNA 258937 Mm.377757 NM_146935 ENSMUSG00000045341 Olfr167 MOR272-1 - 16|16 A3 olfactory receptor 167 protein-coding 108168610 XM_017318817 LOC108168610 - - Y D Y-linked testis-specific protein 1-like protein-coding 102636301 XR_001779185 Gm33406 - - 9 B|9 predicted gene, 33406 ncRNA 108167503 XR_001778354 Gm46019 - - 7 F2|7 predicted gene, 46019 ncRNA 102636809 Gm33779 - - 4|4 predicted gene, 33779 ncRNA 100038418 Mm.412753 Gm10701 - - - predicted gene 10701 ncRNA 67125 Mm.35650 NM_025982 ENSMUSG00000006736 Tspan31 2700085A14Rik|AW742554|Sas - 10|10 D3 tetraspanin 31 protein-coding 105242691 XR_869189 Gm38839 Gm43902 - 6 C3|6 predicted gene, 38839 ncRNA 109615 Fcr - - - Fc receptor protein-coding 108629 Iap5rc18 - - - intracisternal A-type particle, U5 region, SINE repeat c-18 other 108167416 Mm.471845 NR_144498 LOC108167416 - - 7 B1 uncharacterized LOC108167416 ncRNA 13852 Mm.260716 NM_007941 ENSMUSG00000029428 Stx2 AW538950|Epim|G1-536-1|Syn-2|repro34 - 5 G1.3|5 67.99 cM syntaxin 2 protein-coding 100124566 Vmn2r-ps76 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 76 pseudo 77255 Mm.29812 9430014F16Rik - - 3|3 RIKEN cDNA 9430014F16 gene protein-coding 66396 Mm.290620 NM_025534 ENSMUSG00000079084 Ccdc82 2310043N13Rik - 9|9 A1 coiled-coil domain containing 82 protein-coding 545668 Gm12818 - - 4|4 D1 predicted gene 12818 pseudo 72648 Mm.391869 NR_045175 ENSMUSG00000085763 Smc2os 2700081L22Rik - 4|4 B2 structural maintenance of chromosomes 2, opposite strand ncRNA 100862394 Mm.4711 NM_001270515 ENSMUSG00000093987 Gm21704 - - Y A1|Y predicted gene, 21704 protein-coding 353167 Mm.377891 NM_207025 ENSMUSG00000057381 Tas2r123 T2R23|Tas2r23|mGR23|mt2r55|t2r55 - 6 G1|6 64.03 cM taste receptor, type 2, member 123 protein-coding 108169118 XR_001785049 Gm46943 - - 5 G3|5 predicted gene, 46943 ncRNA 269921 Mrgprc1-ps MrgC1 - 7|7 B3 MAS-related GPR, member C1, pseudogene pseudo 100862223 Gm21571 - - X E3|X predicted gene, 21571 pseudo 17221 Mm.12884 NM_010778 ENSMUSG00000016493 Cd46 Mcp - 1 H6|1 98.41 cM CD46 antigen, complement regulatory protein protein-coding 108186 Rpl7-ps5 - - - ribosomal protein L7, pseudogene 5 pseudo 100502900 Gm19441 - - 12 B1|12 18.15 cM transcription elongation factor B polypeptide 1-like pseudo 102639467 Gm35774 - - 16|16 predicted gene, 35774 ncRNA 67523 Mm.437833 NR_040580 ENSMUSG00000101695 1700094J05Rik - - 10|10 C1 RIKEN cDNA 1700094J05 gene ncRNA 57259 Mm.323595 NM_020507 ENSMUSG00000048546 Tob2 2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663 - 15|15 E1 transducer of ERBB2, 2 protein-coding 100041790 Gm12293 - - 11|11 B3 peroxiredoxin 6 pseudogene pseudo 670565 Gm9493 - - 19 B|19 predicted gene 9493 protein-coding 102633041 Gm30962 - - 4|4 predicted gene, 30962 ncRNA 15077 Mm.422680 NM_178216 ENSMUSG00000093769 Hist2h3c1 BE691662|H3-615|H3f2|Hist2h3ca1 - 3|3 F2.1 histone cluster 2, H3c1 protein-coding 638056 Vmn2r-ps133 EG638056 - 17|17 A3.3 vomeronasal 2, receptor, pseudogene 133 pseudo 101056188 Gm29793 - - 5 G3|5 predicted gene, 29793 pseudo 27846 D0Nds6 - - - DNA segment, Nuffield Department of Surgery 6 unknown 17199 Mm.324942 NM_008559 ENSMUSG00000074037 Mc1r Mcr1|Mshra|Tob|e - 8 E1|8 72.1 cM melanocortin 1 receptor protein-coding 432565 Gm12263 - - 11|11 B1.3 ariadne homolog 2 pseudogene pseudo 66533 Mm.144259 NM_025621 ENSMUSG00000090314 2310050C09Rik - - 3|3 F1 RIKEN cDNA 2310050C09 gene protein-coding 108800 Mm.23125 NM_175367 ENSMUSG00000020961 Ston2 4933401N24Rik|AI425999|AW544599 - 12|12 D3 stonin 2 protein-coding 101055663 XM_006535857 LOC101055663 - - - component of Sp100-rs-like protein-coding 100316820 NR_035497 ENSMUSG00000088464 Mir1970 mmu-mir-1970 - X F1|X 57.28 cM microRNA 1970 ncRNA 360041 D17Jcs3 - - - DNA segment, Chr 17, John C. Schimenti 3 unknown 61089 DXMit191 - - - DNA Segment, Chr X, Massachusetts Institute of Technology 191 unknown 102631989 XR_382190 Gm30177 - - 13 A3.3|13 predicted gene, 30177 ncRNA 23936 Mm.257067 NM_011838 ENSMUSG00000022594 Lynx1 AI838844|SLURP-2 - 15|15 D3 Ly6/neurotoxin 1 protein-coding 110120418 LOC110120418 - - - VISTA enhancer mm1036 biological-region 627618 Vmn2r-ps122 EG627618|Gm6774 - 17|17 A3.2 vomeronasal 2, receptor, pseudogene 122 pseudo 102465567 NR_105906 ENSMUSG00000098338 Mir6941 Gm27923|mmu-mir-6941 - 12|12 F1 microRNA 6941 ncRNA 433966 Mm.207047 NR_015478 ENSMUSG00000097191 5730422E09Rik - - 5|5 G3 RIKEN cDNA 5730422E09 gene ncRNA 330414 Mm.187491 Gm5112 D530008I22 - 6 F2|6 predicted gene 5112 protein-coding 100040785 Gm2965 - - 3|3 B predicted gene 2965 pseudo 50500 Mm.24375 NM_015767 ENSMUSG00000073988 Ttpa alpha-TTP - 4 A3|4 7.76 cM tocopherol (alpha) transfer protein protein-coding 105242411 Gm38685 - - 14|14 predicted gene, 38685 protein-coding 100418096 Gm18996 - - 9|9 B NSA2 ribosome biogenesis homolog pseudogene pseudo 102632004 XR_385530 Gm30187 - - 17 B1|17 predicted gene, 30187 ncRNA 73154 3110018A10Rik - - 7|7 RIKEN cDNA 3110018A10 gene protein-coding 238217 Mm.188575 NM_001162933 ENSMUSG00000060499 Rpl10l EG238217 - 12|12 C2 ribosomal protein L10-like protein-coding 791266 Mm.437645 Gm9945 - - 11 B1.3|11 predicted gene 9945 unknown 100418297 Gm19125 - - 1|1 C1.3 predicted gene, 19125 pseudo 780885 Ighv1-24 Gm9739 - 12|12 F2 immunoglobulin heavy variable V1-24 other 387355 Mm.377916 NM_199156 ENSMUSG00000054497 Tas2r130 STC74|T2R30|Tas2r30|Tas2r7|mt2r42 - 6 F3|6 63.44 cM taste receptor, type 2, member 130 protein-coding 102636247 Gm33366 - - 13|13 predicted gene, 33366 ncRNA 105243674 XR_880299 Gm39505 - - 11 E2|11 predicted gene, 39505 ncRNA 71009 Mm.445952 4933407I08Rik - - 18|18 RIKEN cDNA 4933407I08 gene unknown 100416968 Gm18341 - - 12|12 F2 high mobility group box 1 pseudogene pseudo 111937 Iap5rb12 - - - intracisternal A-type particle, U5 region, SINE repeat b-12 other 61390 D5Mit133 - - 5 29.73 cM DNA segment, Chr 5, Massachusetts Institute of Technology 133 unknown 546983 Mm.469904 NM_001105188 ENSMUSG00000090949 Vmn2r77 EG546983 - 7|7 D3 vomeronasal 2, receptor 77 protein-coding 108168911 XR_001784043 Gm46831 - - 3 H3|3 predicted gene, 46831 ncRNA 100042982 Mm.125235 NR_152200 Gm4146 Gm45939 - 18 C|18 predicted gene 4146 ncRNA 100038552 Mm.123934 4732463B04Rik - - - RIKEN cDNA 4732463B04 gene unknown 105242909 XR_881959 Gm38988 - - 7 B2|7 predicted gene, 38988 ncRNA 667021 Gm8424 EG667021 - X|X F3 polypyrimidine tract binding protein 1 pseudogene pseudo 101122 Mm.31204 NM_001033204 ENSMUSG00000051169 Rpusd3 AI527266 - 6|6 E3 RNA pseudouridylate synthase domain containing 3 protein-coding 666781 Gm13487 - - 2|2 C1.1 TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D pseudogene pseudo 78605 Mm.384762 NR_040291 6430706D22Rik - - - RIKEN cDNA 6430706D22 gene ncRNA 102636553 XR_378863 Gm33588 - - 8 A4|8 predicted gene, 33588 ncRNA 102636405 XR_390688 Gm33480 - - 4 C4|4 predicted gene, 33480 ncRNA 111710 Mpmv20 Mpmv-20 - - modified polytropic murine leukemia virus 20 other 106445 AW742604 - - - expressed sequence AW742604 unknown 74552 Mm.26548 NM_028995 ENSMUSG00000028803 Nipal3 9130020G22Rik|AI480660|Npal3 - 4|4 D3 NIPA-like domain containing 3 protein-coding 667632 Gm8739 EG667632 - 13|13 A5 ubiquitin-conjugating enzyme E2H pseudogene pseudo 21240 T(6;7)51H T51H - - reciprocal translocation, Chr 6 and 7, Harwell 51 other 102631941 XR_001783602 Gm30144 - - 2 H4|2 predicted gene, 30144 ncRNA 61009 D4Mit193 - - 4 13.99 cM DNA segment, Chr 4, Massachusetts Institute of Technology 193 unknown 14688 Mm.2344 NM_008142 ENSMUSG00000029064 Gnb1 AA409223|C77571|Gnb-1 - 4 E2|4 86.17 cM guanine nucleotide binding protein (G protein), beta 1 protein-coding 214523 Mm.436756 NM_145403 ENSMUSG00000032091 Tmprss4 mCAP2 - 9|9 A5.2 transmembrane protease, serine 4 protein-coding 64247 Snord116l4 Gm23359|Pwcr1l4 - - small nucleolar RNA, C/D box 116-like 4 snoRNA 69515 1700030E10Rik - - 10|10 RIKEN cDNA 1700030E10 gene ncRNA 67659 Mm.236413 XR_383472 4930563I02Rik - - 14|14 D1 RIKEN cDNA 4930563I02 gene unknown 100041284 Mm.350927 NM_001160128 Gm20868 - - Y|Y C3 predicted gene, 20868 protein-coding 276852 Mm.239566 NM_177777 ENSMUSG00000041623 D11Wsu47e - - 11 E2|11 79.15 cM DNA segment, Chr 11, Wayne State University 47, expressed protein-coding 102636549 XR_879795 Gm33585 - - 11 A5|11 predicted gene, 33585 ncRNA 229323 Mm.123648 NM_173398 ENSMUSG00000050075 Gpr171 A630006E05|F730001G15Rik|H963 - 3|3 D G protein-coupled receptor 171 protein-coding 71601 Mm.98097 NM_027839 ENSMUSG00000070777 Ceacam20 9130012D09Rik - 7|7 A3 carcinoembryonic antigen-related cell adhesion molecule 20 protein-coding 100861913 Mm.35204 NR_155302 C330026H20Rik - - 19|19 C3 RIKEN cDNA C330026H20 gene ncRNA 214897 Mm.325816 NM_173185 ENSMUSG00000032384 Csnk1g1 9130020E21Rik - 9|9 C casein kinase 1, gamma 1 protein-coding 105246646 Gm41904 - - 1|1 predicted gene, 41904 ncRNA 13205 Mm.289662 NM_010028 ENSMUSG00000000787 Ddx3x D1Pas1-rs2|Ddx3|Fin14 - X A1.1|X 8.17 cM DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked protein-coding 100418373 Gm19167 - - 2|2 G1 translocase of inner mitochondrial membrane 23 homolog pseudogene pseudo 107869 Mm.28301 NM_145953 ENSMUSG00000028179 Cth 0610010I13Rik|AI314617|BC019483|CSE|Cys3 - 3|3 H4 cystathionase (cystathionine gamma-lyase) protein-coding 100039581 Gm2325 - - Y|Y A1 ras homolog gene family, member A pseudogene pseudo 102639177 XR_379658 ENSMUSG00000111697 Gm35548 - - 9 E1|9 predicted gene, 35548 ncRNA 22185 Mm.360389 NM_133671 ENSMUSG00000030435 U2af2 65kDa - 7|7 A1 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 protein-coding 665334 Gm12988 - - 4|4 D3 S-phase kinase-associated protein 1A pseudogene pseudo 20502 Mm.388973 NM_009197 ENSMUSG00000033965 Slc16a2 AW105741|Mct8|Xpct - X D|X 46.29 cM solute carrier family 16 (monocarboxylic acid transporters), member 2 protein-coding 211253 Mm.35306 NM_145960 ENSMUSG00000022022 Mtrf1 A830062K05Rik|MtRF-1 - 14|14 D3 mitochondrial translational release factor 1 protein-coding 102632254 Gm30382 - - 3|3 predicted gene, 30382 ncRNA 100043376 Scgb1b15 Abpa15|Gm4399 - 7 B1|7 secretoglobin, family 1B, member 15 protein-coding 62298 D19Mit75 - - 19 47.53 cM DNA segment, Chr 19, Massachusetts Institute of Technology 75 unknown 102638682 XR_001784023 Gm35187 - - 3 H2|3 predicted gene, 35187 ncRNA 108167528 Gm46037 - - 8 A2|8 40S ribosomal protein S25 pseudogene pseudo 208211 Mm.34581 NM_145362 ENSMUSG00000039427 Alg1 HMAT1|HMT1 - 16|16 A1 asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase) protein-coding 105244334 Gm39964 - - 2|2 predicted gene, 39964 ncRNA 627232 Gm6740 EG627232 - 14|14 C2 nuclear receptor binding factor 2 pseudogene pseudo 15376 Mm.938 NM_010446 ENSMUSG00000037025 Foxa2 HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b - 2 G3|2 73.38 cM forkhead box A2 protein-coding 102631640 XR_378102 Gm29930 - - 6 G2|6 predicted gene, 29930 ncRNA 66067 Mm.34520 NM_025332 ENSMUSG00000022668 Gtpbp8 0610037H22Rik - 16|16 B4 GTP-binding protein 8 (putative) protein-coding 11981 Mm.330819 NM_015731 ENSMUSG00000027546 Atp9a IIa - 2|2 H3 ATPase, class II, type 9A protein-coding 12527 Mm.210676 NM_007657 ENSMUSG00000030342 Cd9 Tspan29 - 6 F3|6 59.32 cM CD9 antigen protein-coding 108168918 XR_001784061 Gm46836 - - 3 F1|3 predicted gene, 46836 ncRNA 105247007 XR_880701 Gm42191 - - 3 A3|3 predicted gene, 42191 ncRNA 105243174 XR_870370 Gm39166 - - 8 A4|8 predicted gene, 39166 ncRNA 100534298 Gm21020 - - 5|5 B3 SCAN domain containing 3 pseudogene pseudo 237175 Mm.213016 NM_178712 ENSMUSG00000031298 Adgrg2 AW212196|B830041D06Rik|Gpr64|Me6 - X|X F4 adhesion G protein-coupled receptor G2 protein-coding 108167401 LOC108167401 - - - Ig heavy chain V region 6.96-like other 110459 Ods - - - ocular degeneration with sex reversal unknown 503692 Mm.348794 NM_001012726 ENSMUSG00000053873 Aym1 - - 5 F|5 55.54 cM activator of yeast meiotic promoters 1 protein-coding 215751 Mm.471825 NM_145418 ENSMUSG00000040006 Ginm1 AA589616 - 10|10 A1 glycoprotein integral membrane 1 protein-coding 57230 Mm.267810 NM_020483 ENSMUSG00000020755 Sap30bp 2700016D05Rik|Hcngp - 11|11 E2 SAP30 binding protein protein-coding 331006 Mm.390207 C730026J16 - - 9|9 E3.3 uncharacterized protein C730026J16 protein-coding 552913 Mm.216846 NR_045852 ENSMUSG00000085891 Gm14634 - - X A1.1|X 7.61 cM predicted gene 14634 ncRNA 62979 D16Mit201 - - 16 36.43 cM DNA Segment, Chr 16, Massachusetts Institute of Technology 201 unknown 100036000 Msts4 - - - modifier of Salmonella typhimurium susceptibility 4 unknown 258141 Olfr579-ps1 MOR171-29P|MOR8-9_p - 7|7 E3 olfactory receptor 579, pseudogene 1 pseudo 102640405 XR_376695 Gm36470 - - 5 A1|5 predicted gene, 36470 ncRNA 100093686 Trnar-gcg - - - transfer RNA arginine (anticodon GCG) tRNA 105243982 XR_872388 Gm39681 - - 11 A4|11 predicted gene, 39681 ncRNA 20359 Mm.8029 NM_013662 ENSMUSG00000001227 Sema6b Sema|Seman|VIb|semaZ - 17|17 D sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B protein-coding 100312577 Vmn1r-ps106 Gm11303 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 106 pseudo 102636685 XR_387859 Gm33687 - - 8 C3|8 predicted gene, 33687 ncRNA 14080 Mm.22126 NM_017399 ENSMUSG00000054422 Fabp1 Fabpl|L-FABP - 6 C1|6 32.14 cM fatty acid binding protein 1, liver protein-coding 70892 Mm.187793 NM_027594 ENSMUSG00000036745 Ttll7 1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7 - 3|3 H2 tubulin tyrosine ligase-like family, member 7 protein-coding 112364 Carp3 Q17Ucd1-p - - carcass protein in high growth mice 3 unknown 20242 scb - - - scabby unknown 105243990 XR_865667 Gm39687 - - 1 H1|1 predicted gene, 39687 ncRNA 628072 Igkv14-130 EG628072|Gm6836|cb9 - 6|6 C1 immunoglobulin kappa variable 14-130 other 79201 Mm.290780 NM_024290 ENSMUSG00000037613 Tnfrsf23 SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB - 7 F5|7 88.28 cM tumor necrosis factor receptor superfamily, member 23 protein-coding 102635278 XR_375013 Gm32659 - - 2 F3|2 predicted gene, 32659 ncRNA 100041673 Gm12008 - - 11|11 A2 predicted gene 12008 pseudo 100416956 Gm18336 - - X|X A7.3 paraneoplastic antigen MA3 pseudogene pseudo 100042849 Mm.414207 NM_001270518 ENSMUSG00000102053 Gm4064 - - Y A1|Y predicted gene 4064 protein-coding 101521 Mm.26902 NR_102276 ENSMUSG00000109311 AI314278 - - 7 D3|7 expressed sequence AI314278 ncRNA 68594 Mm.392730 1110018F16Rik AI447221 - 3|3 RIKEN cDNA 1110018F16 gene protein-coding 100503118 Gm19563 - - 12 A3|12 18.06 cM predicted gene, 19563 pseudo 12841 Mm.141312 NM_009936 ENSMUSG00000027570 Col9a3 AV006866 - 2 H4|2 103.14 cM collagen, type IX, alpha 3 protein-coding 74649 Mm.159276 NM_144537 ENSMUSG00000029788 Cpa5 4930430M09Rik - 6|6 A3.3 carboxypeptidase A5 protein-coding 61490 D7Mit182 - - 7 43.46 cM DNA segment, Chr 7, Massachusetts Institute of Technology 182 unknown 100034844 Tbbmd7 - - 17 17.25 cM total body bone mineral density 7 unknown 102640138 XR_385237 Gm36277 - - 17 A1|17 predicted gene, 36277 ncRNA 140740 Mm.214344 NM_153055 ENSMUSG00000019802 Sec63 5730478J10Rik|AI649014|AW319215 - 10 B2|10 22.89 cM SEC63-like (S. cerevisiae) protein-coding 27572 D5Buc27 - - 5 38.44 cM DNA segment, Chr 5, Bucan 27 unknown 241514 Mm.119383 NM_175513 ENSMUSG00000070866 Zfp804a C630007C17Rik|Znf804a - 2|2 D zinc finger protein 804A protein-coding 258670 Mm.271512 NM_146675 ENSMUSG00000048745 Olfr820 MOR116-1 - 10|10 D3 olfactory receptor 820 protein-coding 73921 Mm.439148 NR_045955 ENSMUSG00000087338 Scpep1os 4930405P13Rik - 11|11 C serine carboxypeptidase 1, opposite strand ncRNA 108168270 Gm15696 - - 16 B2|16 22.4 cM 40S ribosomal protein S18 pseudogene pseudo 19826 Mm.1951 NM_009070 ENSMUSG00000034681 Rnps1 - - 17|17 A3.3 ribonucleic acid binding protein S1 protein-coding 628903 Gm6931 EG628903 - 16|16 B5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 258493 Mm.377534 NM_146500 ENSMUSG00000064044 Olfr319 MOR285-2 - 11|11 B1.3 olfactory receptor 319 protein-coding 13191 Mm.6919 NM_007835 ENSMUSG00000031865 Dctn1 AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150 - 6 C3|6 35.94 cM dynactin 1 protein-coding 105247095 Mm.472195 Gm26663 - - 4|4 predicted gene, 26663 ncRNA 102635387 XR_379793 Gm32743 - - 9 F1|9 predicted gene, 32743 ncRNA 100503634 Gm19807 - - 17|17 B1 UPF0368 protein Cxorf26 homolog pseudo 108167992 XR_001780575 Gm46342 - - 12 A1.3|12 predicted gene, 46342 ncRNA 101055960 LOC101055960 - - 4 A1 Friend virus susceptibility protein 1-like pseudo 101055786 Gm29605 - - 9 E3.1|9 predicted gene 29605 pseudo 329763 Mm.169710 NM_177860 ENSMUSG00000049349 Gm5105 D830013H12|EG329763 - 3 G3|3 predicted gene 5105 ncRNA 330780 Mm.101835 E130110O22Rik - - 8|8 B3.1 RIKEN cDNA E130110O22 gene protein-coding 100035729 Adip9 - - - adiposity 9 unknown 72258 Mm.196158 NM_029911 ENSMUSG00000033854 Kcnk10 1700024D23Rik|3010005K24Rik|Trek2 - 12|12 E potassium channel, subfamily K, member 10 protein-coding 258641 Mm.377608 NM_146647 ENSMUSG00000075146 Olfr1154 MOR173-2 - 2|2 D olfactory receptor 1154 protein-coding 102633021 Gm30949 - - 4|4 predicted gene, 30949 ncRNA 240067 Mm.246667 NM_199020 ENSMUSG00000053390 Zfp952 BC057593|C920016K16Rik - 17|17 B1 zinc finger protein 952 protein-coding 57896 Mm.250569 NM_145568 ENSMUSG00000053012 Krcc1 AA792894 - 6|6 C1 lysine-rich coiled-coil 1 protein-coding 12411 Mm.206417 NM_144855 ENSMUSG00000024039 Cbs AI047524|AI303044|HIP4 - 17 B1|17 16.93 cM cystathionine beta-synthase protein-coding 100417638 Gm18728 - - 1|1 E1.2 contactin associated protein-like 5A pseudogene pseudo 100035118 Bwtq10 - - 6 74.64 cM body weight QTL 10 unknown 27399 Mm.276155 NM_013785 ENSMUSG00000032594 Ip6k1 1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6 - 9|9 F1 inositol hexaphosphate kinase 1 protein-coding 105244737 XR_868393 Gm40294 - - 5 B3|5 predicted gene, 40294 ncRNA 666465 NM_001111280 Gm8121 EG666465 - 5|5 C1 IMP1 inner mitochondrial membrane peptidase-like pseudogene pseudo 13840 Mm.455790 NM_007938 ENSMUSG00000055540 Epha6 Ehk2|Hek12|m-ehk2 - 16|16 C1.3 Eph receptor A6 protein-coding 28193 Mm.41272 NM_178606 ENSMUSG00000019873 Reep3 D10Ucla1 - 10 B5.1|10 34.83 cM receptor accessory protein 3 protein-coding 104194 Ea2 Ea-2|H-14|R|R-Z|RHO - - erythrocyte antigen 2 protein-coding 52483 D0Wsu1e M0001A07 - - DNA segment, Wayne State University-1, expressed unknown 100035502 Tailq8 - - - tail length QTL 8 unknown 61716 D5Mit307 - - 5 40.31 cM DNA segment, Chr 5, Massachusetts Institute of Technology 307 unknown 140794 Pas3b Sluc1 - - pulmonary adenoma susceptibility 3b unknown 100126243 Mm.440600 NR_152217 ENSMUSG00000110357 A030001D20Rik 1110025D03Rik - 7|7 B3 RIKEN cDNA A030001D20 gene ncRNA 101696218 Gm28552 - - 9 E2|9 ribosomal protein S15A, pseudogene pseudo 100503364 Gm19656 - - 7|7 53.86 cM predicted gene, 19656 ncRNA 102634170 Mm.391096 XR_386327 Gm31819 - - 18 E2|18 predicted gene, 31819 ncRNA 102640712 Gm36714 - - 9|9 predicted gene, 36714 ncRNA 100035720 Smdq3 - - 6 8.51 cM segregation of mitochondrial DNA QTL 3 unknown 234135 Mm.217337 NM_001001735 ENSMUSG00000054823 Nsd3 6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1 - 8|8 A2 nuclear receptor binding SET domain protein 3 protein-coding 11518 Mm.289106 NM_013457 ENSMUSG00000029106 Add1 AI256389 - 5 B2|5 17.9 cM adducin 1 (alpha) protein-coding 102640043 XR_391128 ENSMUSG00000110221 Gm36210 - - 7 A1|7 predicted gene, 36210 protein-coding 100040129 Gm10270 - - 18|18 A1 predicted pseudogene 10270 protein-coding 16912 Mm.390983 NM_013585 ENSMUSG00000096727 Psmb9 Lmp-2|Lmp2 - 17 B1|17 17.98 cM proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2) protein-coding 61554 D9Mit157 - - 9 47.32 cM DNA segment, Chr 9, Massachusetts Institute of Technology 157 unknown 668957 Gm14334 - - X|X A1.1 spindlin family, member 2 pseudogene pseudo 15141 Hc10 Cen10 - - heterochromatin, Chr 10 other 105243388 XR_870685 Gm39323 - - 9 A5.1|9 predicted gene, 39323 ncRNA 13386 Mm.157069 NM_010052 ENSMUSG00000040856 Dlk1 AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1 - 12 F1|12 60.17 cM delta like non-canonical Notch ligand 1 protein-coding 102635815 XR_374803 Gm33061 - - 2 E1|2 predicted gene, 33061 ncRNA 329160 Mm.419039 NR_024325 ENSMUSG00000087022 9130024F11Rik B530002L08|EG329160 - 1|1 C1.3 RIKEN cDNA 9130024F11 gene ncRNA 100036030 Ba4 - - - bone area 4 unknown 52293 D7Ertd351e - - 7 20.42 cM DNA segment, Chr 7, ERATO Doi 351, expressed unknown 12333 Mm.6221 NM_007600 ENSMUSG00000024942 Capn1 Capa-1|Capa1|mu-calpin - 19 A|19 4.34 cM calpain 1 protein-coding 108528 Ms13-21 Ms13-Hf5 - - minisatellite 13-21 detected by M13 phage probe other 17165 Mm.272206 NM_010765 ENSMUSG00000029454 Mapkapk5 MK5|PRAK - 5|5 F MAP kinase-activated protein kinase 5 protein-coding 258991 Mm.377780 NM_146989 ENSMUSG00000048356 Olfr1496 MOR127-1 - 19|19 A olfactory receptor 1496 protein-coding 85151 D1Mit388 - - 1 50.34 cM DNA segment, Chr 1, Massachusetts Institute of Technology 388 unknown 60747 D1Mit89 - - 1 54.7 cM DNA segment, Chr 1, Massachusetts Institute of Technology 89 unknown 414125 Mm.244305 NR_033558 ENSMUSG00000075184 F830002L21Rik F930017D23Rik - 10 B2|10 RIKEN cDNA F830002L21 gene ncRNA 628308 Mm.460436 NM_001177568 ENSMUSG00000078866 Zfp970 Gm14420 - 2|2 H4 zinc finger protein 970 protein-coding 60900 D8Mit55 - - 8 70.08 cM DNA segment, Chr 8, Massachusetts Institute of Technology 55 unknown 102632968 Gm30910 - - 4|4 predicted gene, 30910 protein-coding 110931 Mm.261636 Vmn2r-ps57 Casr-rs1|Gprc2a-rs1 - 7 B3|7 28.25 cM vomeronasal 2, receptor, pseudogene 57 pseudo 102467291 n-TQctg2 n-Tq2 - 3 F2.2|3 nuclear encoded tRNA glutamine 2 (anticodon CTG) tRNA 13667 Mm.29394 NM_010122 ENSMUSG00000029145 Eif2b4 Eif2b - 5|5 B1 eukaryotic translation initiation factor 2B, subunit 4 delta protein-coding 101154646 Mm.360091 4930401B11Rik - - 2 47.14 cM RIKEN cDNA 4930401B11 gene protein-coding 78321 Mm.41421 NM_153502 ENSMUSG00000067653 Ankrd23 1110058D09Rik|2310041C05Rik|AI853437|Darp|MARP3 - 1|1 B ankyrin repeat domain 23 protein-coding 60801 D3Mit97 - - 3 37.06 cM DNA segment, Chr 3, Massachusetts Institute of Technology 97 unknown 240120 Mm.441018 NM_146249 ENSMUSG00000062101 Zfp119b - - 17|17 D zinc finger protein 119b protein-coding 98254 Mm.442225 AI042932 - - - expressed sequence AI042932 unknown 102638797 XR_382022 LOC102638797 - - 13 A1 uncharacterized LOC102638797 ncRNA 102636334 Mm.421282 XR_384287 Gm33432 - - 15 E2|15 predicted gene, 33432 ncRNA 104108 Segr - - - segregation reversal protein-coding 268390 Mm.13148 NM_172391 ENSMUSG00000020288 Ahsa2 - - 11|11 A3.2 AHA1, activator of heat shock protein ATPase 2 protein-coding 75070 Mm.463364 NR_003100 4930515G16Rik - - 6|6 C1 myc induced nuclear antigen pseudogene pseudo 28036 Mm.291032 NM_138593 ENSMUSG00000027968 Larp7 C330027G06Rik|D3Wsu161e - 3 G2|3 56.54 cM La ribonucleoprotein domain family, member 7 protein-coding 227923 Mm.347582 NM_175463 A930012O16Rik - - 2|2 C1.1 RIKEN cDNA A930012O16 gene unknown 102642962 XR_881373 Gm38646 - - 4 C3|4 predicted gene, 38646 ncRNA 112413 4930447I22Rik - - 8|8 RIKEN cDNA 4930447I22 gene protein-coding 102635480 Gm21894 - - Y|Y predicted gene, 21894 protein-coding 723993 Gm9729 - - 6|6 C1 ARP2 actin-related protein 2 homolog pseudogene pseudo 12994 Mm.296303 NM_007786 ENSMUSG00000001622 Csn3 AW208918|CSN10|Csnk - 5 E1|5 43.56 cM casein kappa protein-coding 100039432 Mm.383450 XR_382279 ENSMUSG00000113671 Gm2233 - - 13 A4|13 predicted gene 2233 ncRNA 19014 Mm.12926 NM_013634 ENSMUSG00000018160 Med1 AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|TRIP-2|l11Jus15 - 11 D|11 61.75 cM mediator complex subunit 1 protein-coding 102638901 XR_376174 Gm35352 - - 3 H2|3 predicted gene, 35352 ncRNA 102633851 Mm.393702 XR_378200 Gm31579 Gm44400 - 6 B3|6 predicted gene, 31579 ncRNA 666778 Gm8283 EG666778 - 1|1 E3 My020 protein pseudo 52544 D15Ertd181e - - - DNA segment, Chr 15, ERATO Doi 181, expressed unknown 105243184 Mm.297069 NR_151456 ENSMUSG00000110464 1700061N14Rik Gm45862 - 8|8 B1.1 RIKEN cDNA 1700061N14 gene ncRNA 102639700 XM_017315312 LOC102639700 - - 12 A1.3 zinc finger protein 120-like protein-coding 100502834 Mm.213614 NR_126066 ENSMUSG00000086287 Gm15972 - - 18 A2|18 12.08 cM predicted gene 15972 ncRNA 76187 Mm.28514 NM_175236 ENSMUSG00000025911 Adhfe1 6330565B14Rik|AI043035|Adh8|HOT - 1|1 A2 alcohol dehydrogenase, iron containing, 1 protein-coding 104509 AU022554 - - - expressed sequence AU022554 unknown 22718 Mm.66913 NM_009560 ENSMUSG00000037640 Zfp60 6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3 - 7 A3|7 15.97 cM zinc finger protein 60 protein-coding 664791 Gm7340 EG664791 - X E1|X predicted gene 7340 pseudo 57315 Mm.2437 NM_020603 ENSMUSG00000024312 Wdr46 2310007I04Rik|Bing4|C78447|C78559 - 17|17 B1 WD repeat domain 46 protein-coding 75516 Mm.37581 NM_029321 ENSMUSG00000066637 Ttc32 1700013G20Rik - 12|12 A1.1 tetratricopeptide repeat domain 32 protein-coding 62573 D12Mit149 - - 12 36.85 cM DNA segment, Chr 12, Massachusetts Institute of Technology 149 unknown 227522 Mm.293948 NM_001013376 ENSMUSG00000049950 Rpp38 C330006A15Rik - 2|2 A1 ribonuclease P/MRP 38 subunit protein-coding 108168953 XM_017320488 Gm46858 - - 4 B2|4 predicted gene, 46858 protein-coding 105243660 XR_878056 Gm39495 - - X A1.1|X predicted gene, 39495 ncRNA 13617 Mm.283168 NM_010332 ENSMUSG00000031616 Ednra AEA001|ET-AR|ETa|Gpcr10|Mhdaaea1 - 8|8 C1 endothelin receptor type A protein-coding 108168223 XR_001781587 Gm46502 - - 15 B3.1|15 predicted gene, 46502 ncRNA 231430 Mm.319697 NM_001033310 ENSMUSG00000035505 Cox18 BC038311 - 5|5 E1 cytochrome c oxidase assembly protein 18 protein-coding 74284 Mm.287421 NR_030733 ENSMUSG00000071265 1700086L19Rik 1700006L05Rik|AU016007 - 12|12 C3 RIKEN cDNA 1700086L19 gene ncRNA 71707 Mm.292503 NM_027873 ENSMUSG00000047719 Ubiad1 1200002M06Rik|AI426463|AW320947|Tere1 - 4|4 E2 UbiA prenyltransferase domain containing 1 protein-coding 102633804 Gm15522 - - 5|5 17.91 cM predicted gene 15522 ncRNA 97125 C76555 - - - expressed sequence C76555 unknown 102638614 XR_376455 Gm35137 - - 4 C6|4 predicted gene, 35137 ncRNA 665396 Gm7619 EG665396 - 8|8 B3.1 tubulin, alpha 1B pseudogene pseudo 637235 Gm13337 - - 2|2 A3 3-phosphoglycerate dehydrogenase pseudogene pseudo 102633683 Gm21853 - - Y|Y predicted gene, 21853 pseudo 100043695 Gm15483 - - 7|7 F3 predicted gene 15483 pseudo 72180 Mm.46715 NM_028141 ENSMUSG00000034800 Zfp661 2810405K07Rik|A1-5|Znf2 - 2|2 F1 zinc finger protein 661 protein-coding 102641092 LOC102641092 - - - non-histone chromosomal protein HMG-14-like pseudo 106780817 Obox4-ps26 Gm20623 - 7 A2|7 8.45 cM oocyte specific homeobox 4, pseudogene 26 pseudo 102636923 XR_872211 Gm33862 - - 11 A1|11 predicted gene, 33862 ncRNA 57440 Mm.18526 NM_020578 ENSMUSG00000024065 Ehd3 Ehd2 - 17 E2|17 45.2 cM EH-domain containing 3 protein-coding 233805 Mm.31539 NM_173408 ENSMUSG00000048787 Dcun1d3 1700020A13Rik|BC030335 - 7|7 F2 DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) protein-coding 102633793 XR_374666 Gm31534 - - 2 C3|2 predicted gene, 31534 ncRNA 116765 Cocrb11 - - - cocaine related behavior 11 unknown 109606 Es14 Es-14 - - esterase 14 protein-coding 102635410 LOC102635410 - - 1 E4 myeloma-overexpressed gene 2 protein homolog pseudogene pseudo 626674 XM_017312475 Olfr471 EG626674|MOR204-38|Olfr471-ps1 - 7|7 E3 olfactory receptor 471 protein-coding 102631821 XR_389107 Gm11682 - - 11 E2|11 73.62 cM predicted gene 11682 ncRNA 102639431 XR_379662 Gm35746 - - 9 E2|9 predicted gene, 35746 ncRNA 62284 D19Mit49 - - 19 45.13 cM DNA segment, Chr 19, Massachusetts Institute of Technology 49 unknown 668506 Gm9210 EG668506 - 17|17 C 3-phosphoglycerate dehydrogenase pseudogene pseudo 110569 Tcra-V4.11 - - - T cell receptor alpha, variable 4.11 other 54712 Mm.256712 NM_018797 ENSMUSG00000074785 Plxnc1 2510048K12Rik|AW742158|CD232|Vespr - 10|10 C2 plexin C1 protein-coding 27058 Mm.273196 NM_012058 ENSMUSG00000026511 Srp9 9kDa - 1|1 H5 signal recognition particle 9 protein-coding 433624 Gm5542 - - 3 F2.1|3 TD and POZ domain containing pseudogene pseudo 111892 Iap5rb8 - - - intracisternal A-type particle, U5 region, SINE repeat b-8 other 194231 Mm.331958 NM_001081047 ENSMUSG00000028841 Cnksr1 BC037758 - 4|4 D3 connector enhancer of kinase suppressor of Ras 1 protein-coding 237940 Mm.302277 NM_178932 ENSMUSG00000078651 Aoc2 RAO - 11|11 D amine oxidase, copper containing 2 (retina-specific) protein-coding 62219 D16Mit64 - - 16 34.22 cM DNA segment, Chr 16, Massachusetts Institute of Technology 64 unknown 102640699 XR_383222 Gm36704 - - 14 A3|14 predicted gene, 36704 ncRNA 28051 D17Ium18e D16Ium18|D16Ium18e - - DNA segment, Chr 17, Indiana University Medical 18, expressed unknown 108178990 LOC108178990 - - - Sry promoter region biological-region 100503021 Mm.402924 NR_045076 ENSMUSG00000115426 Gm19510 - - 15 D1|15 25.51 cM predicted gene, 19510 ncRNA 380808 Ighv10-1 Gm16696 - 12|12 F2 immunoglobulin heavy variable 10-1 other 100416676 Gm18186 - - 1|1 H2.2 zinc finger protein 758 pseudogene pseudo 257757 Olfr840-ps1 MOR155-3_p - 9|9 A2 olfactory receptor 840, pseudogene 1 pseudo 108511969 Zfpm1r13-zfpm1r24 Zfpm1R13|Zfpm1R24 - 8 E1 Zfpm1R13 and Zfpm1R24 erythroid cis-regulatory modules biological-region 102639143 Mm.86677 XR_866045 Fcnaos Gm13520 - 2|2 A3 ficolin A, opposite strand ncRNA 100417254 Gm18484 - - 6|6 B2.3 crumbs homolog 1 pseudogene pseudo 100862202 XM_006542771 ENSMUSG00000096756 LOC100862202 - - - PRAME family member 8-like protein-coding 75146 Mm.159290 NM_029186 ENSMUSG00000025227 Mfsd13a 4930449A08Rik|4930538D17Rik|Tmem180 - 19|19 C3 major facilitator superfamily domain containing 13a protein-coding 61629 D8Mit251 - - 8 44.25 cM DNA segment, Chr 8, Massachusetts Institute of Technology 251 unknown 241175 Mm.251301 NM_172851 ENSMUSG00000067028 Cntnap5b C230078M14Rik|Caspr5-2 - 1|1 E1.1 contactin associated protein-like 5B protein-coding 107591 If4 If-4 - - Sendai virus induced interferon 4 protein-coding 241593 Mm.423301 NM_001033768 ENSMUSG00000074997 Pin1rt1 Pin1-ps1|Pin1l - 2 E2|2 protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1, retrogene 1 protein-coding 66278 Mm.27900 NM_001145433 ENSMUSG00000061461 Smim20 1110067B18Rik|1810013D10Rik|N28078 - 5|5 C1 small integral membrane protein 20 protein-coding 102640486 XR_383603 Gm36534 - - 14 D3|14 predicted gene, 36534 ncRNA 27918 D16Ium47 - - - DNA segment, Chr 16, Indiana University Medical 47 unknown 105244573 XR_867698 Gm40166 - - 3 H2|3 predicted gene, 40166 ncRNA 68169 Mm.52392 NM_172399 ENSMUSG00000049001 Ndnf A930038C07Rik|epidermacan - 6|6 C1 neuron-derived neurotrophic factor protein-coding 62159 D14Mit53 - - 14 20.88 cM DNA segment, Chr 14, Massachusetts Institute of Technology 53 unknown 102633169 XR_381765 Gm31064 - - 12 D1|12 predicted gene, 31064 ncRNA 29871 Mm.427014 NM_013883 ENSMUSG00000000085 Scmh1 AI315320|AI851618|Scml1|Scml3 - 4 D2.1-D2.2|4 56.52 cM sex comb on midleg homolog 1 protein-coding 320771 Mm.447543 C030040A22Rik - - 7|7 RIKEN cDNA C030040A22 gene protein-coding 100039047 Gm2018 - - 11 C|11 predicted gene 2018 protein-coding 102641351 XR_880183 LOC102641351 - - 11 D uncharacterized LOC102641351 ncRNA 102636820 XR_376559 Gm33786 - - 4 D1|4 predicted gene, 33786 ncRNA 19286 Mm.35856 NM_011220 ENSMUSG00000032067 Pts PTPS - 9|9 A5.3 6-pyruvoyl-tetrahydropterin synthase protein-coding 258027 Mm.377333 NM_001011805 ENSMUSG00000059729 Olfr1385 MOR256-41P|MOR256-42P|Olfr1549-ps1 - 11|11 B1.2 olfactory receptor 1385 protein-coding 111261 Snrp1a-rs1 - - - U1 small nuclear ribonucleoprotein 1A, related sequence 1 pseudo 97458 Mm.441762 C80012 - - - expressed sequence C80012 protein-coding 244757 Mm.293696 NM_153803 ENSMUSG00000036395 Glb1l2 - - 9|9 A4 galactosidase, beta 1-like 2 protein-coding 62682 D16Mit116 - - 16 41.6 cM DNA segment, Chr 16, Massachusetts Institute of Technology 116 unknown 111385 Mtv33 Mtv-33 - - mammary tumor virus locus 33 other 74451 Mm.28864 NM_133757 ENSMUSG00000017715 Pgs1 2610019F11Rik|4933424M23Rik|SAF - 11|11 E2 phosphatidylglycerophosphate synthase 1 protein-coding 108946 Mm.379292 NM_198416 ENSMUSG00000039068 Zzz3 3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514 - 3|3 H3 zinc finger, ZZ domain containing 3 protein-coding 668017 XR_376780 ENSMUSG00000094205 Gm8926 - - 5 A1|5 predicted gene 8926 pseudo 102636994 XR_384921 Gm33912 - - 16 C1.3|16 predicted gene, 33912 ncRNA 241070 Mm.103354 NM_146250 ENSMUSG00000046856 Gpr1 - - 1|1 C2 G protein-coupled receptor 1 protein-coding 74102 Mm.264984 NM_028756 ENSMUSG00000022664 Slc35a5 1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik - 16 B5|16 29.44 cM solute carrier family 35, member A5 protein-coding 105244705 XR_868240 Gm40264 lnc-Crot - 5 A1|5 predicted gene, 40264 ncRNA 380608 Mm.371734 NM_147155 ENSMUSG00000052031 Tagap1 2610315E15Rik|AA415005|FKSG15 - 17|17 A1 T cell activation GTPase activating protein 1 protein-coding 104144 Mv - - - malformed vertebrae unknown 69310 Mm.18889 NM_027032 ENSMUSG00000037196 Pacrg 1700008H23Rik - 17 A1|17 7.8 cM PARK2 co-regulated protein-coding 52243 D3Ertd229e - - 3 54.82 cM DNA segment, Chr 3, ERATO Doi 229, expressed unknown 109394 Fob1 - - - F-line obesity QTL 1 unknown 74185 Mm.396102 NM_028803 ENSMUSG00000022707 Gbe1 2310045H19Rik|2810426P10Rik|D16Ertd536e - 16 C2|16 40.19 cM glucan (1,4-alpha-), branching enzyme 1 protein-coding 100417942 Gm12375 - - 4|4 A5 malate dehydrogenase 2, NAD (mitochondrial) pseudogene pseudo 24129 Y301C7L - - - DNA segment Y301-C-7-L unknown 112238 Pid3 - - 11 37.96 cM prion incubation determinant 3 unknown 20708 Mm.36526 NM_011454 ENSMUSG00000042842 Serpinb6b NK13|Spi12|ovalbumin - 13 A3.2|13 13.78 cM serine (or cysteine) peptidase inhibitor, clade B, member 6b protein-coding 100039863 Mm.6660 NM_001164046 ENSMUSG00000073877 Gm13306 - - 4 A5|4 predicted gene 13306 protein-coding 12919 Mm.316614 NM_198408 ENSMUSG00000021680 Crhbp CRH-BP - 13 D1|13 49.5 cM corticotropin releasing hormone binding protein protein-coding 62067 D10Mit42 - - 10 39.72 cM DNA segment, Chr 10, Massachusetts Institute of Technology 42 unknown 102634938 Gm28350 - - Y|Y predicted gene 28350 protein-coding 11720 Mm.14064 NM_133653 ENSMUSG00000037798 Mat1a AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1 - 14|14 B methionine adenosyltransferase I, alpha protein-coding 102639438 XR_390927 Gm35752 - - 4 E1|4 predicted gene, 35752 ncRNA 108168975 XR_001784422 Gm46868 - - 4 D2.2|4 predicted gene, 46868 ncRNA 244199 Mm.99576 NM_172908 ENSMUSG00000048236 Ovch2 9230106D23Rik|Ovtn - 7|7 E3 ovochymase 2 protein-coding 105244994 NM_001167622 Gm3867 100042485 - 9|9 A4 predicted gene 3867 protein-coding 100039805 Mm.394705 NR_033625 ENSMUSG00000106820 D5Ertd605e Gm2433 - 5 G3|5 86.93 cM DNA segment, Chr 5, ERATO Doi 605, expressed ncRNA 235067 Mm.437189 NM_173412 ENSMUSG00000047995 Cypt4 1700009B20Rik|Ckt1r2 - 9|9 A4 cysteine-rich perinuclear theca 4 protein-coding 102636840 XR_385197 Gm33799 - - 17 A1|17 predicted gene, 33799 ncRNA 102634657 XR_869294 Gm32191 - - 6 D3|6 predicted gene, 32191 ncRNA 62834 D12Mit238 - - 12 39.37 cM DNA segment, Chr 12, Massachusetts Institute of Technology 238 unknown 625780 Gm6622 EG625780 - 5|5 E5 predicted gene 6622 pseudo 108168784 XR_001783436 Gm46757 - - 2 E4|2 predicted gene, 46757 ncRNA 381694 Mm.45060 NM_001081204 ENSMUSG00000051950 B3glct B3galtl|Gm1057 - 5|5 G3 beta-3-glucosyltransferase protein-coding 102639458 XR_378062 Gm35765 - - 6 G1|6 predicted gene, 35765 ncRNA 14300 Mm.217312 NM_013522 ENSMUSG00000031590 Frg1 - - 8 A4|8 23.89 cM FSHD region gene 1 protein-coding 102638757 Gm35245 - - 13|13 predicted gene, 35245 ncRNA 15206 Mm.57038 NM_008236 ENSMUSG00000028940 Hes2 HES-2 - 4 E2|4 82.92 cM hes family bHLH transcription factor 2 protein-coding 229663 Mm.277713 NM_144901 ENSMUSG00000068823 Csde1 AA960392|BC016898|D3Jfr1|mKIAA0885|unr - 3 F2.2|3 45.25 cM cold shock domain containing E1, RNA binding protein-coding 78377 Mm.458921 1700016D08Rik - - 16|16 RIKEN cDNA 1700016D08 gene protein-coding 100043943 Gm14864 - - X A1.1|X zinc finger protein 161 pseudogene pseudo 258071 Olfr864-ps1 MOR146-4 - 9|9 A3 olfactory receptor 864, pseudogene 1 pseudo 100417721 Gm18783 - - 13|13 A1 Crn, crooked neck-like 1 pseudogene pseudo 100416810 Gm18269 - - 17|17 A3.2 zinc finger protein 677 pseudogene pseudo 108505 Ms15-4 - - - minisatellite 15-4 detected by probe 33.15 other 100415980 Gm17851 - - 15|15 F2 keratin 5 pseudogene pseudo 105243928 XR_865435 Gm39643 - - 1 C1.3|1 predicted gene, 39643 ncRNA 574081 Mm.390013 NM_001025351 ENSMUSG00000071169 Defb46 Defb53|EG574081 - 8 A1.3|8 defensin beta 46 protein-coding 319344 C230053D17Rik - - 9|9 F4 RIKEN cDNA C230053D17 gene protein-coding 67581 Mm.257819 NM_026254 ENSMUSG00000022749 Tbc1d23 4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689 - 16|16 C1.1 TBC1 domain family, member 23 protein-coding 105734727 Mm.473736 NM_001308449 ENSMUSG00000097919 Gm27021 Emc8-1190005i06rik - 8 E1|8 predicted gene, 27021 protein-coding 102640619 Mm.27032 LOC102640619 - - - uncharacterized LOC102640619 ncRNA 677788 Gm9723 - - 3 B|3 predicted gene 9723 pseudo 100041219 Gm10171 - - 1|1 H3 translocase of inner mitochondrial membrane 23 homolog pseudogene pseudo 100036431 wrmod1 - - - wobbler modifier 1 unknown 234577 Mm.291815 NM_153507 ENSMUSG00000034361 Cpne2 3322401K10Rik - 8|8 C5 copine II protein-coding 668300 Rplp0-ps1 EG668300|Gm9093 - 3 F2.1|3 40.17 cM ribosomal protein, large, P0, pseudogene 1 pseudo 69362 Mm.280779 NM_027054 ENSMUSG00000027443 Cst12 1700006F03Rik|CRES3 - 2|2 G3 cystatin 12 protein-coding 328531 Mm.60703 NM_001256056 ENSMUSG00000094112 9330182O14Rik - - 15|15 B3.1 RIKEN cDNA 9330182O14 gene protein-coding 234374 Mm.388127 NM_001024922 ENSMUSG00000057788 Ddx49 R27090_2 - 8|8 B3.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 protein-coding 100038581 Mm.490898 Gm10838 - - - predicted gene 10838 unknown 74589 Mm.196226 NM_029013 ENSMUSG00000033182 Kbtbd12 4833415F11Rik|4933428M03Rik|Klhdc6 - 6|6 D1 kelch repeat and BTB (POZ) domain containing 12 protein-coding 85200 D13Mit205 - - 13 3.08 cM DNA segment, Chr 13, Massachusetts Institute of Technology 205 unknown 62410 D16Mit142 - - 16 3.5 cM DNA segment, Chr 16, Massachusetts Institute of Technology 142 unknown 102577427 NM_001287194 Esp5 - - 17 B2|17 exocrine gland secreted peptide 5 protein-coding 60877 D7Mit15 - - 7 88.64 cM DNA segment, Chr 7, Massachusetts Institute of Technology 15 unknown 320305 NM_177131 9530009G21Rik - - 10|10 B3 RIKEN cDNA 9530009G21 gene unknown 67010 Mm.76911 NM_144948 ENSMUSG00000042396 Rbm7 1200007M24Rik|1500011D06Rik|AU041934|AW554393 - 9|9 A5.3 RNA binding motif protein 7 protein-coding 100041607 Gm15209 - - X|X F4 predicted gene 15209 pseudo 111453 Rnr11 - - - ribosomal RNA, Chr 11 cluster other 75660 Mm.379242 NM_029377 ENSMUSG00000036845 Lin37 1810054G18Rik - 7|7 B1 lin-37 homolog (C. elegans) protein-coding 639558 Gm7272 EG639558 - 14 E2.1|14 cyclin-dependent kinase 4 pseudogene pseudo 102641476 Mm.385537 NR_156010 Gm38560 - - 10 C1|10 predicted gene, 38560 ncRNA 72281 Mm.40974 NM_028182 ENSMUSG00000053886 Sh2d4a 2210402M20Rik|SH2A - 8|8 B3.3 SH2 domain containing 4A protein-coding 102640061 XR_383598 Gm36219 - - 14 D3|14 predicted gene, 36219 ncRNA 16494 Mm.62535 NM_013568 ENSMUSG00000038077 Kcna6 Kv1.6|MK1.6 - 6 F3|6 61.72 cM potassium voltage-gated channel, shaker-related, subfamily, member 6 protein-coding 108167955 XR_001780520 Gm46313 - - 12 A1.2|12 hippocalcin-like protein 1 pseudo 100035494 Bmd30 Bmd23 - - bone mineral density 30 unknown 102632210 XR_381371 Gm30350 - - 12 A2|12 predicted gene, 30350 ncRNA 109479 Yaa1 - - 13 30.06 cM Y-linked autoimmune acceleration QTL 1 unknown 100416740 Gm12845 - - 4|4 D2.1 zinc finger protein 352 pseudogene pseudo 239126 Mm.319636 NM_183175 ENSMUSG00000071347 C1qtnf9 9130217G22Rik|CTRP9|Ciqtnf9 - 14|14 D1 C1q and tumor necrosis factor related protein 9 protein-coding 100038457 Plast2a - - - plasma plant sterol 2a unknown 433271 Gm5522 EG433271 - 1|1 A2 potassium inwardly-rectifying channel, subfamily J, member 14 pseudogene pseudo 100035061 Lgq3 - - - late growth QTL 3 unknown 665628 Gm7719 EG665628 - 12|12 C1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100504448 Gm20234 - - 11|11 50.3 cM predicted gene, 20234 ncRNA 433134 Mm.78783 XR_141321 Gm20742 - - 17|17 E1.1 predicted gene, 20742 unknown 110100 Rasl5-2 - - - RAS-like, family 5, locus 2 protein-coding 100035002 Dfq1 - - - dead fetuses QTL 1 unknown 12293 Mm.159842 NM_009784 ENSMUSG00000040118 Cacna2d1 Ca(v)alpha2delta1|Cacna2|Cchl2a - 5 A2-A3|5 6.56 cM calcium channel, voltage-dependent, alpha2/delta subunit 1 protein-coding 22687 Mm.17519 NM_011752 ENSMUSG00000032078 Zpr1 AI303781|Zfp259|Znf259 - 9|9 A5.2 ZPR1 zinc finger protein-coding 27965 Mm.272475 NM_138584 ENSMUSG00000032388 Spg21 ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST - 9 C|9 35.32 cM SPG21, maspardin protein-coding 18648 Mm.16783 NM_023418 ENSMUSG00000011752 Pgam1 2310050F24Rik|Pgam-1 - 19|19 C3 phosphoglycerate mutase 1 protein-coding 110651 Mm.328476 NM_148945 ENSMUSG00000031309 Rps6ka3 MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2 - X F4|X 73.27 cM ribosomal protein S6 kinase polypeptide 3 protein-coding 676623 Gm14622 - - X|X A5 predicted gene 14622 pseudo 667296 Gm12947 - - 4|4 D2.2 predicted gene 12947 pseudo 100036047 Bmrbc2 - - - bone marrow RBC 2 unknown 100043045 Gm4189 - - 10 D3|10 predicted gene 4189 protein-coding 104354 Rep1 Rep-1 - - repair of chromatin damage 1 protein-coding 546835 Gm13282 - - 4|4 C4 interferon-alpha 2 pseudogene pseudo 387131 Mm.379565 NM_199066 ENSMUSG00000068218 Ssxb9 - - X|X A1.1 synovial sarcoma, X member B9 protein-coding 75469 Mm.45824 NM_029299 ENSMUSG00000031991 Spata19 1700001L23Rik|AV047838|spergen-1 - 9|9 A4 spermatogenesis associated 19 protein-coding 22236 Mm.300095 NM_013701 ENSMUSG00000090171 Ugt1a2 UDPGT 1-2|Ugt1 - 1|1 D UDP glucuronosyltransferase 1 family, polypeptide A2 protein-coding 111687 Mpmv9 Mpmv-9 - - modified polytropic murine leukemia virus 9 other 654438 A630031M23Rik - - - Riken cDNA A630031M23 gene protein-coding 77533 Mm.266592 NR_026848 C030034I22Rik - - 17|17 E1.3 RIKEN cDNA C030034I22 gene ncRNA 240675 Mm.129534 NM_172840 ENSMUSG00000025082 Vwa2 Amaco - 19|19 D2 von Willebrand factor A domain containing 2 protein-coding 21233 T(6;13)3Gso T3Gso - - reciprocal translocation, Chr 6 and 13, Generoso 3 other 112107 Bgeq6 - - 7 88.86 cM body growth early QTL 6 unknown 360114 D17Jcs115 - - - DNA segment, Chr 17, John C. Schimenti 115 unknown 111327 Shc1-rs1 Shc-rs1 - - src homology 2 domain-containing transforming protein C1, related sequence 1 pseudo 19166 Mm.252255 NM_008944 ENSMUSG00000015671 Psma2 Lmpc3 - 13|13 A1 proteasome (prosome, macropain) subunit, alpha type 2 protein-coding 436185 Gm14452 - - X|X A1.1 polypyrimidine tract binding protein 1 pseudogene pseudo 100862326 XM_017318700 Gm21647 - - Y B|Y predicted gene, 21647 protein-coding 100418450 Gm12803 - - 4|4 C7 protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform pseudogene pseudo 105243866 XR_865193 LOC105243866 - - 1 A3 uncharacterized LOC105243866 ncRNA 97351 Mm.24928 E230006M18Rik C76972 - - RIKEN cDNA E230006M18 gene protein-coding 58909 Mm.28813 NM_153574 ENSMUSG00000037709 Fam13a AI462012|D430015B01Rik|FAM13A1|Precm1 - 6|6 B3 family with sequence similarity 13, member A protein-coding 384522 Mm.480286 NM_001166706 ENSMUSG00000074402 Vmn1r55 Gm1422|Gm403|V1rd5 - 7|7 A1 vomeronasal 1 receptor 55 protein-coding 654803 Mm.423237 XR_869948 B130055M24Rik - - 7 F3|7 RIKEN cDNA B130055M24 gene ncRNA 232599 Mm.430719 NM_177689 Gm4876 B930018B01|EG232599 - 6 A2|6 predicted gene 4876 ncRNA 110772 Amh-rs7 - - - anti-Mullerian hormone, related sequence 7 protein-coding 75189 Mm.399302 XR_380560 4930533K18Rik 4933433H14Rik - 10|10 B5.3 RIKEN cDNA 4930533K18 gene unknown 111333 Amy - - - amylase complex other 102639851 XR_380308 Gm36065 - - 10 B3|10 predicted gene, 36065 ncRNA 13014 Mm.6095 NM_007793 ENSMUSG00000005054 Cstb AA960480|Stfb - 10 C1|10 39.72 cM cystatin B protein-coding 75584 Mm.47709 NR_040603 ENSMUSG00000099447 2310030A07Rik - - 1|1 G1 RIKEN cDNA 2310030A07 gene ncRNA 61169 D16Mit32 - - 16 2.33 cM DNA segment, Chr 16, Massachusetts Institute of Technology 32 unknown 384466 Gm5314 EG384466 - 6|6 D3 predicted gene 5314 pseudo 67389 Mm.29140 NM_026125 ENSMUSG00000023571 C1qtnf12 1110035L05Rik|C1qdc2|CTRP12|Fam132a|alipolin - 4 E2|4 87.66 cM C1q and tumor necrosis factor related 12 protein-coding 102633320 XR_876270 Gm31175 - - 16 C4|16 predicted gene, 31175 ncRNA 404326 NM_207564 Olfr1083-ps MOR191-3|Olfr1083 - 2|2 D olfactory receptor 1083, pseudogene pseudo 53158 236k12-Sp6 - - - DNA segment, 236k12-Sp6 unknown 333331 Gm5131 EG333331 - 8|8 D1 acyl-Coenzyme A dehydrogenase, medium chain pseudogene pseudo 105246820 Gm42044 - - 8|8 predicted gene, 42044 ncRNA 111930 Iap3rc10 - - - intracisternal A-type particle, U3 region, SINE repeat c-10 other 110396 Evi17 - - - ecotropic viral integration site 17 protein-coding 102632037 XR_383236 Gm30212 - - 14 A3|14 predicted gene, 30212 ncRNA 102467567 n-TKctt16 n-Tk16 - 3 F2.1|3 nuclear encoded tRNA lysine 16 (anticodon CTT) tRNA 546683 Gm5966 EG546683 - 17|17 A3.2 formyl peptide receptor 2 pseudogene pseudo 78156 Mm.243818 NR_130995 ENSMUSG00000108669 4930441H08Rik - - 7|7 D1 RIKEN cDNA 4930441H08 gene ncRNA 102634279 XR_374006 Gm31902 - - 2 A1|2 predicted gene, 31902 ncRNA 100046796 Gm14567 - - X|X A3.3 polymerase (RNA) II (DNA directed) polypeptide K pseudogene pseudo 791301 Gm10265 - - - predicted gene 10265 protein-coding 102640217 XR_386379 Gm36338 - - 18 E3|18 predicted gene, 36338 ncRNA 102466990 NR_105940 ENSMUSG00000099006 Mir6974 Gm27658|mmu-mir-6974 - 17|17 B1 microRNA 6974 ncRNA 74019 Mm.318430 NM_028718 ENSMUSG00000034292 Traf3ip1 3930402D05Rik|AU041749|MIP-T3 - 1|1 D TRAF3 interacting protein 1 protein-coding 108167560 XM_017313046 Gm46058 - - 8 E2|8 predicted gene, 46058 protein-coding 102636283 Gm17093 - - 14|14 22.56 cM predicted gene 17093 protein-coding 102638510 Gm35056 - - 9|9 predicted gene, 35056 ncRNA 75947 Mm.109620 NR_130161 ENSMUSG00000085677 4930594O21Rik - - 3|3 B RIKEN cDNA 4930594O21 gene ncRNA 73284 Mm.250841 NM_030143 ENSMUSG00000046818 Ddit4l 1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1 - 3|3 G3 DNA-damage-inducible transcript 4-like protein-coding 385737 Gm1758 - - 16|16 A1 predicted gene 1758 protein-coding 102631503 XM_006512407 Gm29825 - - 9 F3|9 predicted gene, 29825 protein-coding 102634830 XR_872799 Gm32322 - - 12 C2|12 predicted gene, 32322 ncRNA 100035650 Mtxe2 - - - methotrextate efficacy 2 unknown 319184 Mm.358955 NM_175665 ENSMUSG00000062727 Hist1h2bk - - 13|13 A3.1 histone cluster 1, H2bk protein-coding 21431 tcl0 tcl-0 - - t-complex lethal 0 unknown 27950 D13Nds1 - - 13 27.68 cM DNA segment, Chr 13, Nuffield Department of Surgery 1 unknown 385253 Mm.335607 Igkv4-55 Gm1524|at4 - 6|6 C1 immunoglobulin kappa variable 4-55 other 75560 Mm.270487 NM_029337 ENSMUSG00000029505 Ep400 1700020J09Rik|AU023439|mDomino|mKIAA1498|p400 - 5|5 F E1A binding protein p400 protein-coding 21235 T(6;13)6Ad T6Ad - - reciprocal translocation, Chr 6 and 13, Adler 6 other 101056166 Gm29645 - - Y|Y predicted gene 29645 protein-coding 235533 Mm.213651 NM_177352 ENSMUSG00000041440 Gk5 AV095337|C330018K18Rik|G630067D24Rik - 9|9 E3.3 glycerol kinase 5 (putative) protein-coding 93885 Mm.196699 NM_053139 ENSMUSG00000044043 Pcdhb14 2210006M07Rik|Pcdhb17|PcdhbN - 18|18 B3 protocadherin beta 14 protein-coding 241627 Mm.293284 NM_030234 ENSMUSG00000027242 Wdr76 5830411K18Rik|6030457D09|AA517836 - 2|2 E5 WD repeat domain 76 protein-coding 100034849 Pcir2 - - 11 51.23 cM periosteal circumference 2 unknown 210297 Mm.30506 NM_001081173 ENSMUSG00000031290 Lrch2 AI316885|mKIAA1495 - X|X F2 leucine-rich repeats and calponin homology (CH) domain containing 2 protein-coding 108512 Ms13-1 Ms13-Ps1 - - minisatellite 13-1 detected by M13 phage probe other 102640126 Gm20445 - - 6|6 30.35 cM predicted gene 20445 pseudo 114277 Manh10 QTL-SH7.2 - 7 43.46 cM mandible shape 10 unknown 83965 Mm.30145 NM_032003 ENSMUSG00000023960 Enpp5 AW061004|D17Abb1e|E-NPP 5 - 17 B3|17 20.3 cM ectonucleotide pyrophosphatase/phosphodiesterase 5 protein-coding 102465893 NR_106181 ENSMUSG00000098769 Mir8103 Gm27841|mmu-mir-8103 - 11|11 D microRNA 8103 ncRNA 100526552 NR_037257 ENSMUSG00000096134 Mir669p-1 Mir699p-1|mmu-mir-669p-1 - 2 A1|2 8.22 cM microRNA 669p-1 ncRNA 61563 DXMit104 - - X 23.19 cM DNA segment, Chr X, Massachusetts Institute of Technology 104 unknown 108167578 Mm.69387 XR_001778743 1700014L14Rik - - 8|8 A1.3 RIKEN cDNA 1700014L14 gene protein-coding 383707 Gm13600 - - 2|2 C1.3 predicted gene 13600 pseudo 93851 D5Jor1 - - - DNA segment, Chr 5, Barbara Jordan 1 unknown 52190 D3Ertd258e - - 3 78.12 cM DNA segment, Chr 3, ERATO Doi 258, expressed unknown 493163 Splq7 - - - spleen weight QTL 7 unknown 21641 Mm.424521 Tcrg-V7 TRGV7|Vg7 - 13 A2|13 T cell receptor gamma, variable 7 other 381760 Mm.276356 NM_028358 ENSMUSG00000029911 Ssbp1 2810480P10Rik|G630031O20Rik|MtSSB|mtDBP - 6|6 B1 single-stranded DNA binding protein 1 protein-coding 78498 Mm.396338 1810073J14Rik - - 1|1 RIKEN cDNA 1810073J14 gene protein-coding 102639814 Mm.398991 XR_375203 A730032A03Rik - - 2|2 H3 RIKEN cDNA A730032A03 gene ncRNA 102636129 LOC102636129 - - 2 E5 cytochrome b-c1 complex subunit 6, mitochondrial pseudogene pseudo 56593 174g24Sp6 - - - DNA segment, 174g24Sp6 unknown 105243060 XR_869958 Gm39092 - - 7 F3|7 predicted gene, 39092 ncRNA 105247273 Gm42401 - - 7|7 predicted gene, 42401 ncRNA 623409 Gm6426 EG623409 - 8|8 A1.1 ribosomal protein SA pseudogene pseudo 61889 D1Mit430 - - 1 4.31 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 430 unknown 791271 Mm.309520 Gm9981 - - - predicted gene 9981 unknown 105246769 XR_878705 Gm42008 - - 5 F|5 predicted gene, 42008 ncRNA 20399 Mm.8538 NM_011363 ENSMUSG00000030733 Sh2b1 AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299 - 7 F3|7 69.06 cM SH2B adaptor protein 1 protein-coding 103985 Skn1 Sk-1|Skn-1 - - skin antigen 1 protein-coding 110542 Mm.60331 NM_144547 ENSMUSG00000023047 Amhr2 Misiir|Misrii|Mrii - 15 F3|15 57.58 cM anti-Mullerian hormone type 2 receptor protein-coding 102631543 Mm.194986 XR_384731 Gm15651 - - 16 B1|16 13.44 cM predicted gene 15651 ncRNA 102186 A730070K21Rik AL022774 - - RIKEN cDNA A730070K21 gene protein-coding 102635666 XR_388791 Gm32946 - - 11 B3|11 predicted gene, 32946 ncRNA 102467377 n-TScga3 n-Ts14 - 11 B3|11 nuclear encoded tRNA serine 14 (anticodon CGA) tRNA 100039850 Mm.177181 Gm2458 - - 6 G3|6 predicted gene 2458 protein-coding 50702 Mm.220362 NM_015780 ENSMUSG00000057037 Cfhr1 AI194696|CFHRB|Cfhl1 - 1|1 F complement factor H-related 1 protein-coding 102633162 Gm31059 - - 3|3 predicted gene, 31059 ncRNA 223739 Mm.323925 NM_001033273 ENSMUSG00000036046 5031439G07Rik AW554572|mKIAA0930 - 15|15 E2 RIKEN cDNA 5031439G07 gene protein-coding 667582 Gm8712 EG667582 - 13|13 D1 SNF8, ESCRT-II complex subunit, homolog pseudogene pseudo 100036009 Brml2 - - - bone response to mechanical loading 2 unknown 112146 Daq1 - - - directional asymmetry QTL 1 unknown 93749 Hspe1-ps2 Cpn10-rs3 - 12|12 D1 heat shock protein 1 (chaperonin 10), pseudogene 2 pseudo 69765 Mm.458858 1500004F05Rik - - 8|8 A4 RIKEN cDNA 1500004F05 gene protein-coding 667840 Amd-ps5 EG667840 - 6 C1|6 S-adenosylmethionine decarboxylase, pseudogene 5 pseudo 18305 ol - - - oligodactyly unknown 102638691 XR_387259 Gm35192 - - 1 D|1 predicted gene, 35192 ncRNA 112297 Estq3 Est3 - 11 60.47 cM estradiol regulated response QTL 3 unknown 105244479 XR_867396 Gm40080 - - 3 F1|3 predicted gene, 40080 ncRNA 76901 Mm.259996 NM_199299 ENSMUSG00000020387 Jade2 1200017K05Rik|AI480685|Phf15|mKIAA0239 - 11|11 B1.3 jade family PHD finger 2 protein-coding 102635906 XR_384182 Gm33124 - - 15 D3|15 predicted gene, 33124 ncRNA 100043103 Mm.480300 NM_001166843 ENSMUSG00000094602 Vmn1r169 Gm4232 - 7 A3|7 vomeronasal 1 receptor 169 protein-coding 63856 Mm.275901 NM_022015 ENSMUSG00000023980 Taf8 AW260255|Tbn - 17|17 C TATA-box binding protein associated factor 8 protein-coding 105242677 XR_869169 Gm38828 - - 6 C1|6 predicted gene, 38828 ncRNA 78246 Mm.20805 NM_030064 ENSMUSG00000018572 Phf23 JUNE-1 - 11 B3|11 PHD finger protein 23 protein-coding 14397 Mm.248731 NM_010251 ENSMUSG00000029211 Gabra4 Gabra-4 - 5|5 C3.1-C3.2 gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4 protein-coding 66664 Mm.46480 NM_025693 ENSMUSG00000022856 Tmem41a 2900010K02Rik|5730578N08Rik - 16|16 B1 transmembrane protein 41a protein-coding 102634444 Gm32025 - - 10 B5.3|10 predicted gene, 32025 pseudo 319226 6430500G05Rik - - 7|7 RIKEN cDNA 6430500G05 gene protein-coding 100861987 Mm.359538 NM_001293057 Gm21379 - - Y A1|Y predicted gene, 21379 protein-coding 105243191 XR_870433 Gm39180 - - 8 B1.3|8 predicted gene, 39180 ncRNA 100502697 Mm.421486 XR_141138 Gm19327 - - 12 D1|12 39.09 cM predicted gene, 19327 ncRNA 101055792 LOC101055792 - - 2 H1 Friend virus susceptibility protein 1-like pseudo 21292 T(In1;5)44H T44H - - reciprocal translocation, inverted Chr 1 and Chr 5, Harwell 44 other 20019 Mm.135581 NM_009088 ENSMUSG00000049553 Polr1a 194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1 - 6 C1|6 32.21 cM polymerase (RNA) I polypeptide A protein-coding 109280067 LOC109280067 Mm636 - - VISTA enhancer mm636 biological-region 66611 Mm.158120 NM_025660 ENSMUSG00000025257 Ribc1 2610028I09Rik|W08639 - X|X F3 RIB43A domain with coiled-coils 1 protein-coding 102633728 Gm31483 - - 1|1 predicted gene, 31483 ncRNA 116925 D13Jde12 - - - DNA segment, Chr 13, Jan Deussing 12 unknown 78170 Mm.444790 NR_038024 ENSMUSG00000112493 4930486F22Rik - - 10 C1|10 RIKEN cDNA 4930486F22 gene ncRNA 77361 Mm.400674 XR_389429 9430085M18Rik Gm43270 - 5|5 E4 RIKEN cDNA 9430085M18 gene ncRNA 52706 D10Ertd761e - - 10 39.72 cM DNA segment, Chr 10, ERATO Doi 761, expressed unknown 52468 Mm.29490 NM_146012 ENSMUSG00000078429 Ctdsp2 AI586070|D10Ertd73e|OS-4|OS4|SCP2 - 10 D3|10 74.35 cM CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 protein-coding 29862 Mm.103668 NM_016718 ENSMUSG00000041377 Ninj2 - - 6|6 F1 ninjurin 2 protein-coding 105245504 XR_873408 Gm40952 - - 13 B1|13 predicted gene, 40952 ncRNA 100416030 Gm17879 - - - fibrillarin pseudogene pseudo 257886 Mm.457883 NM_001011740 ENSMUSG00000044061 Olfr225 MOR256-51 - 11|11 B1.3 olfactory receptor 225 protein-coding 21093 T(15E;16B1)60Dn T(15;16)60Dn|T60Dn - - reciprocal translocation, Chr 15, cytogenetic band E; and Chr 16, cytogenetic band B1, Davisson 60 other 18392 Mm.294154 NM_011015 ENSMUSG00000028587 Orc1 AA545195|MmORC1|Orc1l - 4|4 C7 origin recognition complex, subunit 1 protein-coding 66817 Mm.345350 NM_025781 ENSMUSG00000031953 Tmem170 9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a - 8 E1|8 58.08 cM transmembrane protein 170 protein-coding 432852 LOC432852 - - 14|14 C1 uncharacterized LOC432852 unknown 100503211 Rps12-ps9 Gm10279 - 8 E1|8 72.08 cM ribosomal protein S12, pseudogene 9 pseudo 226866 Mm.131665 NM_001033288 ENSMUSG00000032719 Sbspon Gm106|Rpesp - 1|1 A3 somatomedin B and thrombospondin, type 1 domain containing protein-coding 105245473 XR_873270 Gm40922 - - 13 A3.3|13 predicted gene, 40922 ncRNA 109491 Sles1 - - 17 18.31 cM systemic lupus erythmatosus suppressor 1 unknown 102638455 Gm35015 - - 5|5 predicted gene, 35015 ncRNA 100418225 Gm19082 - - 16|16 C2 proteasome (prosome, macropain) 26S subunit, ATPase 3 pseudogene pseudo 666859 Gm8330 EG666859 - 10 A2|10 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102640204 XR_378067 Gm36328 Gm44025 - 6 G1|6 predicted gene, 36328 ncRNA 102634089 XR_379357 Gm31756 - - 9 A5.3|9 predicted gene, 31756 ncRNA 24056 Mm.383198 NM_011894 ENSMUSG00000021892 Sh3bp5 AI606498|SH3BP-5|Sab - 14|14 B SH3-domain binding protein 5 (BTK-associated) protein-coding 102640446 Gm36506 - - 14|14 predicted gene, 36506 ncRNA 110378 Tpm3-rs1 - - - tropomyosin 3, related sequence 1 protein-coding 654445 Gm12098 EG654445|Rbm8 - 11|11 A4 RNA binding motif protein pseudogene pseudo 102641247 Mm.411386 NR_136932 Gm12339 - - 11 B5|11 45.92 cM predicted gene 12339 ncRNA 80828 NR_002851 ENSMUSG00000064823 Snord82 Rnu82|U82|Z25 - 1 C5|1 43.94 cM small nucleolar RNA, C/D box 82 snoRNA 100038656 Mm.414798 BC048594 Gm10795 - 2|2 cDNA sequence BC048594 ncRNA 100417236 Gm18474 - - 8|8 C3 crumbs homolog 1 pseudogene pseudo 77954 Mm.436916 A930012M21Rik - - 7|7 RIKEN cDNA A930012M21 gene protein-coding 108167712 LOC108167712 - - 1 E2.3 high mobility group protein B1 pseudogene pseudo 171206 Mm.389781 NM_134436 ENSMUSG00000071428 Vmn1r27 V1rc33 - 6|6 B3 vomeronasal 1 receptor 27 protein-coding 100534314 Gm21027 - - 10|10 C1 predicted gene, 21027 pseudo 111001 Smad-ps1 Madh-ps1|Mlp1-ps - - SMAD family member, pseudogene 1 pseudo 56378 Mm.275942 NM_019824 ENSMUSG00000029465 Arpc3 1110006A04Rik|p21-ARC|p21-Ar|p21Arc - 5|5 F actin related protein 2/3 complex, subunit 3 protein-coding 667438 Mm.414522 NR_045179 ENSMUSG00000112896 Gm8633 EG667438 - 10|10 C3 predicted gene 8633 ncRNA 192202 Tlag2 - - - T lymphoma attenuation gene 2 protein-coding 62541 D11Mit184 - - 11 75.93 cM DNA segment, Chr 11, Massachusetts Institute of Technology 184 unknown 108251790 LOC108251790 - - - Pax2 5' regulatory region biological-region 102632659 Gm30678 - - 2|2 predicted gene, 30678 ncRNA 640803 Gm7312 EG640803 - X|X F4 predicted gene 7312 pseudo 209446 Mm.249142 NM_172472 ENSMUSG00000000134 Tfe3 F830016E06Rik|Tcfe3|Tfe-3|bHLHe33 - X A1.1|X 3.5 cM transcription factor E3 protein-coding 109480 Aem2 - - 7 45.71 cM anti-erythrocyte autoantibody modifier 2 unknown 414094 Mm.124287 NM_001001497 Dgkeos A930013B10Rik - 11|11 C diacylglycerol kinase, epsilon, opposite strand ncRNA 320878 Mm.52312 NM_177282 ENSMUSG00000038244 Mical2 5330438E18Rik|9530064J02|MICAL-2|mKIAA0750 - 7|7 F1 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 100417113 Gm13440 - - 2|2 B basic transcription factor 3 pseudogene pseudo 19387 Mm.270975 NM_011241 ENSMUSG00000022391 Rangap1 C79654|Fug1|mKIAA1835 - 15 E1|15 38.21 cM RAN GTPase activating protein 1 protein-coding 80697 Del(7)Tyr-p 1DThWb - - deletion, Chr 7, Tyr c-1DThWb, proximal other 319207 Mm.434384 NM_001012311 ENSMUSG00000055313 Pgbd1 4921509E05Rik - 13|13 A3.1 piggyBac transposable element derived 1 protein-coding 105245683 Gm41100 - - 14|14 predicted gene, 41100 ncRNA 102632753 Gm29617 - - Y|Y predicted gene 29617 ncRNA 102465658 NR_106053 ENSMUSG00000099309 Mir7085 Gm27423|mmu-mir-7085 - 9|9 A5.2 microRNA 7085 ncRNA 214424 Mm.31129 NM_177460 ENSMUSG00000032392 Parp16 ARTD15|BC055447|C79952|PARP-16 - 9|9 C poly (ADP-ribose) polymerase family, member 16 protein-coding 654409 Mm.305555 NR_029452 Stk35os1 4932416H05Rik - 2|2 F1 serine/threonine kinase 35, opposite strand 1 ncRNA 53704 D12Nyu1 D12-1 - - DNA segment, Chr 12, NYU 1 unknown 233913 Mm.220880 NM_145590 ENSMUSG00000030780 BC017158 - - 7|7 F3 cDNA sequence BC017158 protein-coding 234959 Mm.44151 NM_144933 ENSMUSG00000031935 Med17 77kDa|C330002H14Rik|Crsp6|Trap80 - 9|9 A2 mediator complex subunit 17 protein-coding 19564 Rb(5.13)70Lub Rb70Lub - - Robertsonian translocation, Chr 5 and 13, Lubeck 70 other 243300 Mm.74750 NM_175521 ENSMUSG00000045348 Nyap1 6430598A04Rik - 5|5 G2 neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1 protein-coding 30007 D10Mit174 - - 10 38.72 cM DNA segment, Chr 10, Massachusetts Institute of Technology 174 unknown 100418229 Gm19085 - - 1|1 D nucleolar complex associated 3 homolog pseudogene pseudo 100093697 Trnastop-uua - - - transfer RNA ochre suppressor(anticodon UUA) tRNA 76110 5830462O15Rik - - 9|9 RIKEN cDNA 5830462O15 gene protein-coding 61173 D16Mit79 - - 16 2.59 cM DNA segment, Chr 16, Massachusetts Institute of Technology 79 unknown 99326 Mm.41290 NM_178888 ENSMUSG00000038860 Garnl3 AW120551 - 2|2 B GTPase activating RANGAP domain-like 3 protein-coding 100416750 Gm18228 - - 9|9 A3 zinc finger protein 791 pseudogene pseudo 23999 Mm.274346 NM_011876 ENSMUSG00000023277 Twf2 A6-related|AU014993|Ptk9l|Ptk9r - 9|9 F1 twinfilin actin binding protein 2 protein-coding 13274 Del(14)19H Del19H - - deletion, Chr 14, Harwell 19 other 102631857 Gm27017 - - 14|14 predicted gene, 27017 protein-coding 105245995 XR_875493 Gm41362 - - 15 E1|15 predicted gene, 41362 ncRNA 791386 Mm.380851 Gm10113 - - 13 A5|13 predicted gene 10113 protein-coding 104044 Sta - - - autosomal striping unknown 105243077 Gm39106 - - 7|7 predicted gene, 39106 ncRNA 100035680 Pregq2 - - 11 58.9 cM pregnancy QTL 2 unknown 102634250 XR_375888 Gm31880 - - 3 F2.2|3 predicted gene, 31880 ncRNA 225898 Mm.31008 NM_144872 ENSMUSG00000071647 Eml3 BC022146 - 19|19 A echinoderm microtubule associated protein like 3 protein-coding 62091 D10Mit98 - - 10 53.22 cM DNA segment, Chr 10, Massachusetts Institute of Technology 98 unknown 105245535 Gm40980 - - 13|13 predicted gene, 40980 ncRNA 105244330 XR_866869 Gm39961 - - 2 H1|2 predicted gene, 39961 ncRNA 100417865 Gm18870 - - 16|16 C1.3 zinc finger and SCAN domain containing 5B pseudogene pseudo 62400 D18Mit169 - - 18 7.56 cM DNA segment, Chr 18, Massachusetts Institute of Technology 169 unknown 19524 Rb(3.15)2Rk Rb2Rk - - Robertsonian translocation, Chr 3 and 15, Roderick 2 other 60774 D2Mit97 - - 2 54.43 cM DNA segment, Chr 2, Massachusetts Institute of Technology 97 unknown 69392 Mm.335641 1700024P12Rik - - 17|17 A1 RIKEN cDNA 1700024P12 gene protein-coding 258366 Mm.389741 NM_146369 ENSMUSG00000059411 Olfr434 MOR261-10 - 6|6 B2.1 olfactory receptor 434 protein-coding 106014 Mm.244319 NM_134096 ENSMUSG00000054863 Fam19a5 TAFA5|Tafa-5|Tara-5 - 15|15 E3 family with sequence similarity 19, member A5 protein-coding 109280042 LOC109280042 Mm313 - - VISTA enhancer mm313 biological-region 100039798 Gm2429 - - 3|3 A1 NADH dehydrogenase (ubiquinone) flavoprotein 2, pseudogene pseudo 360198 Mm.221301 NM_013550 ENSMUSG00000069265 Hist1h3a - - 13|13 A3.1 histone cluster 1, H3a protein-coding 338523 Mm.293175 NM_001033430 ENSMUSG00000042599 Kdm7a A630082K20Rik|BB041802|Jhdm1d|mKIAA1718 - 6|6 B1 lysine (K)-specific demethylase 7A protein-coding 68618 Mm.293255 NM_026787 ENSMUSG00000045237 1110012L19Rik - - X|X A7.2 RIKEN cDNA 1110012L19 gene protein-coding 668917 Mm.152805 NR_033459 ENSMUSG00000083674 Zfp133-ps Zfp133 - 2 71.02 cM|2 G1 zinc finger protein 133, pseudogene pseudo 76263 Mm.267014 NM_029555 ENSMUSG00000029864 Gstk1 0610025I19Rik|AW260476|DsbA-L - 6|6 B2.1 glutathione S-transferase kappa 1 protein-coding 60739 D1Mit57 - - 1 74.07 cM DNA segment, Chr 1, Massachusetts Institute of Technology 57 unknown 11925 Mm.57236 NM_009719 ENSMUSG00000044312 Neurog3 Atoh5|Math4B|bHLHa7|ngn3 - 10|10 B4 neurogenin 3 protein-coding 101055918 Gm29743 - - 5 A1|5 predicted gene, 29743 pseudo 105243555 XR_880288 Gm39444 - - 11 E1|11 predicted gene, 39444 ncRNA 433711 Mm.331633 Gm12580 - - 4|4 B3 predicted gene 12580 unknown 108168743 XR_001783275 Gm46733 - - 2 B|2 predicted gene, 46733 ncRNA 68635 Mm.258397 1110025M09Rik - - 15|15 RIKEN cDNA 1110025M09 gene protein-coding 100502754 Gm12355 - - 11 D|11 62.21 cM serine/arginine-rich splicing factor 3 pseudogene pseudo 102637508 Mm.437850 XR_001782672 Gm34299 - - 19 C3|19 predicted gene, 34299 ncRNA 102633061 Mm.464273 XR_001778535 Gm30978 - - 8 A2|8 predicted gene, 30978 ncRNA 66708 Mm.46389 NM_025720 ENSMUSG00000069721 Krtap3-2 2310020D06Rik|4733401L16Rik|KAP3.2|KRTAP3.2 - 11|11 D keratin associated protein 3-2 protein-coding 105247108 XR_881175 Gm42266 - - 4 A5|4 predicted gene, 42266 ncRNA 26413 Mm.196581 NM_011949 ENSMUSG00000063358 Mapk1 9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk - 16 A3|16 10.53 cM mitogen-activated protein kinase 1 protein-coding 74126 Mm.149870 NM_028769 ENSMUSG00000024807 Syvn1 1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1 - 19|19 A synovial apoptosis inhibitor 1, synoviolin protein-coding 109705 n-TCgca40 Trc1|n-Tc40 - 6 B2.3|6 23.14 cM nuclear encoded tRNA cysteine 40 (anticodon GCA) tRNA 105243724 XR_878249 Gm39537 - - X F1|X predicted gene, 39537 ncRNA 62006 D7Mit357 - - - DNA segment, Chr 7, Massachusetts Institute of Technology 357 unknown 14897 Mm.209265 NM_133975 ENSMUSG00000026219 Trip12 1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12 - 1|1 C5 thyroid hormone receptor interactor 12 protein-coding 102640940 XR_381358 Gm36886 - - 12 A1.3|12 predicted gene, 36886 ncRNA 101967 AA591044 - - - expressed sequence AA591044 unknown 20730 Mm.272 NM_009258 ENSMUSG00000024503 Spink1 Spink3|p12 - 18|18 B3 serine peptidase inhibitor, Kazal type 1 protein-coding 74155 Mm.318841 NM_133753 ENSMUSG00000028967 Errfi1 1300002F13Rik|AI788755|Mig-6|Mig6|RALT - 4|4 E2 ERBB receptor feedback inhibitor 1 protein-coding 319845 Mm.176725 NM_178415 ENSMUSG00000035919 Bbs9 E130103I17Rik - 9|9 A3 Bardet-Biedl syndrome 9 (human) protein-coding 71750 Mm.29342 NM_027900 ENSMUSG00000025404 R3hdm2 1300003K24Rik|AU041262|mKIAA1002 - 10|10 D3 R3H domain containing 2 protein-coding 114724 Skull16 E11.2|L11|QTL-S11.2 - 11 62.4 cM skull morphology 16 unknown 15128 Hbb-ar Hbb-lcr - 7 E2|7 hemoglobin, activating region biological-region 436199 Mm.236392 NM_001243943 ENSMUSG00000068173 Btg1-ps1 4930525M21Rik - X|X A3.3 B cell translocation gene 1, anti-proliferative, pseudogene 1 protein-coding 606546 Gm13400 Ppia-ps2_387.1 - 2|2 B peptidylprolyl isomerase A pseudogene 2_387.1 pseudo 102632016 LOC102632016 - - X D high mobility group protein B1-like pseudo 111793 Iapls3-13 - - - intracisternal A particle, lymphocyte specific 3-13 other 66570 Mm.23596 NM_025639 ENSMUSG00000068101 Cenpm 2610019I03Rik|AI853711|Pane1 - 15|15 E1 centromere protein M protein-coding 29822 Del(X)3Brd - - - deletion, Chr X, Bradley 3 other 100039595 XM_011251041 ENSMUSG00000104267 Gm20807 - - Y|Y A1 predicted gene, 20807 protein-coding 20015 Rpn2-rs1 - - - ribophorin 2, related sequence 1 protein-coding 624863 Gm6533 EG624863 - 15|15 A2 predicted gene 6533 pseudo 110120467 LOC110120467 - - - VISTA enhancer mm1463 biological-region 70530 Mm.133607 NM_027452 ENSMUSG00000040490 Lrfn2 5730420O05Rik|SALM1|mKIAA1246 - 17|17 C leucine rich repeat and fibronectin type III domain containing 2 protein-coding 227446 Mm.337339 NM_029349 ENSMUSG00000026319 2310035C23Rik 6430401N10|Kiaa1468|Relch|mKIAA1468 - 1 E2.1|1 RIKEN cDNA 2310035C23 gene protein-coding 61636 D8Mit239 - - 8 42.1 cM DNA segment, Chr 8, Massachusetts Institute of Technology 239 unknown 270035 Mm.268349 NM_173012 ENSMUSG00000037363 Letm2 6030453H13|D030041N04Rik - 8|8 A2 leucine zipper-EF-hand containing transmembrane protein 2 protein-coding 66759 Mm.441963 4933425D22Rik AI606871 - - RIKEN cDNA 4933425D22 gene protein-coding 100041293 Gm3257 - - 7|7 C predicted gene 3257 pseudo 668578 Gm12486 - - 3|3 F2.2 nuclear import 7 pseudogene pseudo 100504254 Gm15903 - - 5|5 68.26 cM predicted gene 15903 ncRNA 100042851 Gm4066 - - 13 C3|13 smoothened homolog pseudogene pseudo 67128 Mm.458052 NM_025985 ENSMUSG00000020794 Ube2g1 2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik - 11|11 B4 ubiquitin-conjugating enzyme E2G 1 protein-coding 107966118 Sox10-mcs5 MCS5|U2 - - Sox10 multiple-species conserved sequence 5 biological-region 102638036 XR_377575 Gm34701 Gm44222 - 6 B2.1|6 predicted gene, 34701 ncRNA 110120529 LOC110120529 - - - VISTA enhancer mm1179 biological-region 360103 D17Brg19 - - - DNA segment, Chr 17, David E. Bergstrom 19 unknown 258060 Mm.389282 NM_001011816 ENSMUSG00000075125 Olfr1181 MOR225-9P - 2|2 D olfactory receptor 1181 protein-coding 105242687 XR_869184 Gm38836 - - 6 C2|6 predicted gene, 38836 ncRNA 68034 Mm.440181 NM_026520 ENSMUSG00000074922 Fam122a 2410124L17Rik|2900009I07Rik|Gm9849 - 19|19 B family with sequence similarity 122, member A protein-coding 17540 Mm.250023 NM_010826 ENSMUSG00000005611 Mrvi1 BB115629|Irag|Ris1 - 7 E3|7 57.9 cM MRV integration site 1 protein-coding 404239 Mm.377927 NM_207538 ENSMUSG00000070551 Mrgprb5 Mgrg11|MrgB5 - 7|7 B4 MAS-related GPR, member B5 protein-coding 102637142 XR_388816 Gm12326 - - 11 B4|11 43.61 cM predicted gene 12326 ncRNA 100417018 Gm18364 - - 8|8 A2 calcium binding protein 39 pseudogene pseudo 100415967 Gm17842 - - 19|19 C1 cullin 1 pseudogene pseudo 97053 Mm.490259 C77070 - - - expressed sequence C77070 protein-coding 70227 Mm.333800 NM_001004139 ENSMUSG00000068959 Zfp619 3000002G13Rik - 7|7 B3 zinc finger protein 619 protein-coding 68050 Mm.27903 NM_023423 ENSMUSG00000023075 Akirin1 6330407G11Rik - 4|4 D2.2 akirin 1 protein-coding 105246001 XR_875508 Gm41368 - - 15 E1|15 predicted gene, 41368 ncRNA 14940 Mm.14465 NM_010371 ENSMUSG00000079186 Gzmc AI323531|B10|CCP2|Ctla-5|Ctla5 - 14 C3|14 28.19 cM granzyme C protein-coding 100417663 Gm18747 - - 16|16 A3 U2 small nuclear ribonucleoprotein B pseudogene pseudo 218368 Gm4813 EG218368 - 13|13 C3 zinc finger and BTB domain containing 44 pseudogene pseudo 319603 A730009E18Rik - - 13|13 RIKEN cDNA A730009E18 gene protein-coding 61572 DXMit180 - - X 73.13 cM DNA segment, Chr X, Massachusetts Institute of Technology 180 unknown 12228 Mm.392910 NM_009770 ENSMUSG00000022863 Btg3 ANA|tob5 - 16|16 C3.1 B cell translocation gene 3 protein-coding 108167681 XR_001779274 Gm46130 - - 9 F1|9 predicted gene, 46130 ncRNA 16773 Mm.256087 NM_008481 ENSMUSG00000019899 Lama2 5830440B04|dy|mKIAA4087|mer|merosin - 10 A4|10 14.23 cM laminin, alpha 2 protein-coding 432397 M134G01 - - - DNA segment, M134G01 unknown 85188 D19Mit34 - - 19 50.72 cM DNA segment, Chr 19, Massachusetts Institute of Technology 34 unknown 258787 Mm.377691 NM_146791 ENSMUSG00000111239 Olfr1248 MOR23110 - 2|2 E1 olfactory receptor 1248 protein-coding 72303 Mm.482578 NM_028191 ENSMUSG00000067231 Cyp2c65 2210009K14Rik - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 65 protein-coding 62350 D1Mit403 - - 1 81.63 cM DNA segment, Chr 1, Massachusetts Institute of Technology 403 unknown 97828 C85918 - - - expressed sequence C85918 unknown 432450 Mm.49665 NM_001013411 ENSMUSG00000069670 Nkain2 6330571D19Rik|AW455467|Tcba1 - 10|10 A4 Na+/K+ transporting ATPase interacting 2 protein-coding 102636329 Gm33428 - - 8|8 predicted gene, 33428 ncRNA 11492 Mm.89940 NM_009616 ENSMUSG00000011256 Adam19 AL024287|MADDAM|MTLNB|Mltnb - 11 B1.1|11 27.54 cM a disintegrin and metallopeptidase domain 19 (meltrin beta) protein-coding 20787 Mm.278701 NM_011480 ENSMUSG00000020538 Srebf1 ADD1|SREBP1|bHLHd1 - 11|11 B2 sterol regulatory element binding transcription factor 1 protein-coding 22408 Mm.1123 NM_021279 ENSMUSG00000022997 Wnt1 Int-1|Wnt-1|sw|swaying - 15 F1|15 54.65 cM wingless-type MMTV integration site family, member 1 protein-coding 243912 Mm.34885 NM_001012401 ENSMUSG00000036854 Hspb6 AA387366|Gm479|Hsp20 - 7|7 B1 heat shock protein, alpha-crystallin-related, B6 protein-coding 54598 Mm.75467 NM_018782 ENSMUSG00000059588 Calcrl AV071593|CRLR - 2|2 D calcitonin receptor-like protein-coding 434205 Mm.333986 NR_045744 ENSMUSG00000109145 Gm20744 - - 7|7 D3 predicted gene, 20744 ncRNA 111887 Iap5rb1 - - - intracisternal A-type particle, U5 region, SINE repeat b-1 other 100861475 NR_046123 ENSMUSG00000096335 n-R5s108 Rn5s6 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 108 rRNA 227506 Gm4854 EG227506 - 1|1 E2.3 leukotriene A4 hydrolase pseudogene pseudo 102634898 Gm32373 - - Y|Y tRNA methyltransferase 112 homolog pseudo 235281 Mm.290083 NM_153522 ENSMUSG00000049281 Scn3b 1110001K16Rik|4833414B02Rik|Scnb3 - 9|9 A5.1 sodium channel, voltage-gated, type III, beta protein-coding 100504632 XR_141061 ENSMUSG00000083992 Gm11478 - - 11 C|11 51.82 cM 60S ribosomal protein L13a-like pseudo 328320 Mm.297727 NM_001033401 ENSMUSG00000097848 Gm807 - - 13|13 D1 predicted gene 807 unknown 381236 Mm.491242 NM_001013770 ENSMUSG00000024766 Lipo3 AI747699|Lipo1 - 19|19 C1 lipase, member O3 protein-coding 218066 Mm.484775 NM_146542 ENSMUSG00000036658 Olfr11 M49|MOR256-11|ORL121 - 13 A3.1|13 7.9 cM olfactory receptor 11 protein-coding 14011 Mm.269995 NM_007961 ENSMUSG00000030199 Etv6 AW123102|AW557856|Tel - 6 G1|6 64.58 cM ets variant 6 protein-coding 100035324 Gwth6 - - - growth traits 6 unknown 105243565 Gm39453 - - 9|9 predicted gene, 39453 ncRNA 546052 Gm5908 EG546052 - 8|8 A3 predicted gene 5908 pseudo 100041822 Gm3530 - - 7|7 A1 zinc finger protein 954 pseudogene pseudo 56093 Mm.285849 NM_019540 ENSMUSG00000040065 Pfpl Epcs5|Epcs50 - 19|19 A pore forming protein-like protein-coding 105244018 XR_865764 Gm39709 - - 1 H4|1 predicted gene, 39709 ncRNA 18361 Mm.222844 NM_146955 ENSMUSG00000060112 Olfr60 IH6|MOR253-6 - 7|7 F4 olfactory receptor 60 protein-coding 102465175 NR_105761 ENSMUSG00000098611 Mir6343 Gm27304|mmu-mir-6343 - 1|1 C4 microRNA 6343 ncRNA 102632807 XR_879845 Gm30785 - - 11 B1.3|11 predicted gene, 30785 ncRNA 102633409 XR_375880 Gm31242 - - 3 F2.2|3 predicted gene, 31242 ncRNA 108457 Xmv66 Xmv-66 - - xenotropic murine leukemia virus 66 other 100503125 Gm10913 - - 16 B3|16 25.43 cM 60S ribosomal protein L29-like pseudo 102637576 XR_381691 Gm15283 - - 12 C3|12 32.0 cM predicted gene 15283 ncRNA 102634239 XR_379224 Gm31871 - - 9 A4|9 predicted gene, 31871 ncRNA 100418089 Gm18994 - - 15|15 B3.1 nuclear receptor subfamily 2, group E, member 3 pseudogene pseudo 11688 Mm.289672 NM_009661 ENSMUSG00000020891 Alox8 15-LOX-2|15-LOX-B|8-LOX|8S-LOX|Alox15b - 11|11 B3 arachidonate 8-lipoxygenase protein-coding 100628578 NR_039558 ENSMUSG00000092998 Mir5099 mmu-mir-5099|mu-mir-5099 - 12 A3|12 16.84 cM microRNA 5099 ncRNA 259140 Olfr1063-ps1 GA_x5J8B7W1Q6G-2523-3443|GA_x5J8B7W4PJY-571-1491|MOR190-3P - 2|2 D olfactory receptor 1063, pseudogene 1 pseudo 20614 Mm.45953 NM_011428 ENSMUSG00000027273 Snap25 Bdr|GENA70|SNAP-25|SUP|sp - 2 F3|2 67.56 cM synaptosomal-associated protein 25 protein-coding 100499526 NR_037309 ENSMUSG00000092917 Mir3472 mmu-mir-3472 - X F2|X 66.25 cM microRNA 3472 ncRNA 434768 Mm.336025 NM_001004193 ENSMUSG00000064137 Rhox8 Tox - X|X A3.3 reproductive homeobox 8 protein-coding 17886 Mm.29677 NM_022410 ENSMUSG00000022443 Myh9 Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6 - 15 E1|15 36.81 cM myosin, heavy polypeptide 9, non-muscle protein-coding 105245163 XR_873101 Gm40654 - - 13 A1|13 predicted gene, 40654 ncRNA 105245350 XR_872334 Gm40822 - - 11 A4|11 predicted gene, 40822 ncRNA 62716 D18Mit115 - - 18 57.53 cM DNA segment, Chr 18, Massachusetts Institute of Technology 115 unknown 100415902 Mm.382053 XR_384829 Gm15658 - - 16 B3|16 predicted gene 15658 ncRNA 668626 Gm9276 EG668626 - 19|19 D3 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 21939 Mm.271833 NM_011611 ENSMUSG00000017652 Cd40 AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50 - 2 H3|2 85.38 cM CD40 antigen protein-coding 353328 Mm.246621 NM_181729 ENSMUSG00000048191 Muc6 - - 7 F5|7 87.03 cM mucin 6, gastric protein-coding 100035596 Phdlc2 - - - plasma HDL cholesterol 2 unknown 71695 0910001E24Rik - - 4|4 RIKEN cDNA 0910001E24 gene protein-coding 545814 Mm.349005 NM_001126045 ENSMUSG00000075599 Smok3a Smok2b1 - 5|5 G2 sperm motility kinase 3A protein-coding 619917 Gm6114 EG619917 - 13|13 D1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 402730 XR_868085 ENSMUSG00000084929 Foxo6os 4732418A04Rik - 4|4 D2.1 forkhead box O6, opposite strand ncRNA 259000 Mm.390872 NM_146998 ENSMUSG00000062608 Olfr195 MOR184-5 - 16|16 C1.3 olfactory receptor 195 protein-coding 17999 Mm.279923 NM_010890 ENSMUSG00000032216 Nedd4 AA959633|AL023035|AU019897|E430025J12Rik|EG639396|Gm7265|KIAA0093|Nedd4-1|Nedd4a - 9 D|9 40.08 cM neural precursor cell expressed, developmentally down-regulated 4 protein-coding 108167716 XR_001779356 Gm29387 - - 9 F1|9 predicted gene 29387 ncRNA 100039355 Mm.702 NM_001110217 Rps16-ps2 Gm10079 - 5|5 G1.3 ribosomal protein S16, pseudogene 2 pseudo 666682 Rps2-ps9 EG666682|Gm8235 - 17 A3.3|17 ribosomal protein S2, pseudogene 9 pseudo 102633360 XR_375251 Gm31204 - - 2 H3|2 predicted gene, 31204 ncRNA 100039194 Gm2092 - - X A2|X predicted gene 2092 pseudo 16524 Mm.261168 NM_008429 ENSMUSG00000038026 Kcnj9 1700085N21Rik|Girk3|Kir3.3|mbGIRK3 - 1 H3|1 79.66 cM potassium inwardly-rectifying channel, subfamily J, member 9 protein-coding 102638921 Gm21917 - - 15|15 predicted gene, 21917 ncRNA 102639805 XR_373951 Gm36031 - - 2 A1|2 predicted gene, 36031 ncRNA 100873092 Mm.414599 NR_110579 ENSMUSG00000089819 Gm15679 - - 8 D1|8 49.39 cM predicted gene 15679 ncRNA 76733 6330436F06Rik - - 6|6 RIKEN cDNA 6330436F06 gene protein-coding 100035022 Ecla ecl1 - 3 36.51 cM epistatic circling A C57L/J 1 unknown 102637964 XR_378537 Gm34645 - - 7 F3|7 predicted gene, 34645 ncRNA 231452 Mm.86564 NM_172713 ENSMUSG00000029415 Sdad1 4931421J16|AA591032|AW538460 - 5|5 E2 SDA1 domain containing 1 protein-coding 171537 AF179997 563-17-145 - - DNA sequence AF179997 unknown 103978 Mm.320791 NM_175500 ENSMUSG00000022112 Gpc5 A230034F01Rik - 14|14 E4 glypican 5 protein-coding 100416478 Gm18128 - - 7|7 B3 ribosomal protein L18A pseudogene pseudo 635097 Gm11701 - - 2|2 G1 calcium binding and coiled-coil domain 2 pseudogene pseudo 105246549 XR_877774 Gm41823 - - 19 B|19 predicted gene, 41823 ncRNA 102639206 XR_378554 Gm35567 - - 7 F3|7 predicted gene, 35567 ncRNA 622701 Gm6343 EG622701 - 13|13 D2.2 GC-rich promoter binding protein 1-like 1 pseudogene pseudo 108970 Mm.390215 NR_040763 ENSMUSG00000101584 4930519F24Rik - - 9|9 E3.3 RIKEN cDNA 4930519F24 gene ncRNA 100043893 Rpl36a-ps3 Gm10316 - 6|6 G1 ribosomal protein L36A, pseudogene 3 pseudo 74777 Mm.29773 NM_029100 ENSMUSG00000050989 Selenon 1110019I12Rik|AI414492|SelN|Sepn1 - 4|4 D3 selenoprotein N protein-coding 18545 Mm.440882 NM_008790 ENSMUSG00000004630 Pcp2 L7|Pcp-2 - 8 A1.1|8 1.92 cM Purkinje cell protein 2 (L7) protein-coding 102633998 XR_388653 Gm31688 - - 11 B1.3|11 predicted gene, 31688 ncRNA 20255 Mm.2386 NM_009130 ENSMUSG00000032181 Scg3 1B1075|AI385542|Chgd|SgIII - 9 D|9 42.32 cM secretogranin III protein-coding 20320 Mm.15125 NM_009145 ENSMUSG00000032336 Nptn AW554172|SDR-1|Sdfr1 - 9|9 B neuroplastin protein-coding 84506 Mm.439939 NM_032541 ENSMUSG00000050440 Hamp Hamp1|Hepc|Hepc1 - 7 B1|7 19.27 cM hepcidin antimicrobial peptide protein-coding 109280026 LOC109280026 Mm200 - - VISTA enhancer mm200 biological-region 111731 Igk-V10 - - - immunoglobulin kappa chain variable 10 (V10) other 73490 Mm.268180 NM_001164370 ENSMUSG00000047022 Mipol1 1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e - 12 C1|12 24.7 cM mirror-image polydactyly 1 protein-coding 13642 Mm.209813 NM_010111 ENSMUSG00000001300 Efnb2 ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1 - 8 A1.1|8 3.42 cM ephrin B2 protein-coding 223770 Mm.254438 NM_001033274 ENSMUSG00000022387 Brd1 1110059H06Rik|AI316859|mKIAA4191 - 15|15 E3 bromodomain containing 1 protein-coding 20286 Mm.432075 NM_001081016 ENSMUSG00000022390 Zc3h7b Gm627|Scrg3|Zc2h7b|mKIAA1031 - 15|15 E1 zinc finger CCCH type containing 7B protein-coding 62905 D10Mit213 - - 10 9.75 cM DNA segment, Chr 10, Massachusetts Institute of Technology 213 unknown 106583 Mm.124373 NM_134123 ENSMUSG00000046201 Scaf8 A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116 - 17|17 A1 SR-related CTD-associated factor 8 protein-coding 100124348 Traj40 Gm16668 - 14|14 C2 T cell receptor alpha joining 40 other 111593 Pmv46 Pmv-46 - - polytropic murine leukemia virus 46 other 52056 D1Ertd62e - - 1 E1.1|1 DNA segment, Chr 1, ERATO Doi 62, expressed unknown 20973 Mm.468228 NM_009304 ENSMUSG00000048277 Syngr2 Clast2|cellugyrin - 11|11 E2 synaptogyrin 2 protein-coding 100035346 Org6 ORG10.1 - 10 46.85 cM organ weight 6 unknown 100042392 Gm3820 - - X|X D predicted gene 3820 pseudo 105246293 XR_876869 Gm41597 - - 17 C|17 predicted gene, 41597 ncRNA 105244118 XR_866131 Gm13528 - - 2 B|2 22.31 cM predicted gene 13528 ncRNA 75884 Mm.488108 4930572J10Rik - - 18|18 RIKEN cDNA 4930572J10 gene ncRNA 76875 Mm.449988 4930516K23Rik - - 7|7 RIKEN cDNA 4930516K23 gene protein-coding 100043199 Gm4290 - - 7|7 A3 apoptosis inhibitor 5 pseudogene pseudo 16528 Mm.12894 NM_008431 ENSMUSG00000024957 Kcnk4 Catsperz|MLZ-622|TRAAK|TRAAKt|Tex40 - 19 A|19 5.08 cM potassium channel, subfamily K, member 4 protein-coding 110562 H2-T7 H-2T7 - - histocompatibility 2, T region locus 7 protein-coding 56791 Mm.38261 NM_019949 ENSMUSG00000027078 Ube2l6 2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8 - 2|2 D ubiquitin-conjugating enzyme E2L 6 protein-coding 60858 D6Mit22 - - 6 37.15 cM DNA segment, Chr 6, Massachusetts Institute of Technology 22 unknown 102636250 Gm33369 - - 8|8 predicted gene, 33369 ncRNA 100861905 Gm21316 - - Y|Y predicted gene, 21316 protein-coding 226957 Mm.25966 NR_015347 Gm4850 EG226957 - 1|1 B THO complex 4 pseudogene pseudo 112241 Bhr2 - - 15 29.03 cM bronchial hyperresponsiveness 2 unknown 100042479 Trav4d-3 Gm10887|Gm31|Trav4-3 - 14 C2|14 T cell receptor alpha variable 4D-3 other 100035616 Obq20 - - 8 2.14 cM obesity QTL 20 unknown 100416221 Gm17977 - - 5|5 C1 predicted gene, 17977 pseudo 723876 NR_030254 ENSMUSG00000070084 Mir486 Mirn486|mir-486a|mmu-mir-486|mmu-mir-486a - 8|8 A2 microRNA 486 ncRNA 109964 Gas4 Gas-4 - - growth arrest specific 4 protein-coding 17178 Mm.263847 NM_008557 ENSMUSG00000057092 Fxyd3 Mat8 - 7|7 B1 FXYD domain-containing ion transport regulator 3 protein-coding 105247041 XR_880861 Gm42219 - - 5 A3|5 predicted gene, 42219 ncRNA 637913 Gm7224 EG637913 - 7 B3|7 F-box protein 34 pseudogene pseudo 76898 Mm.218788 NM_029792 ENSMUSG00000045994 B3gat1 0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1 - 9|9 A4 beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) protein-coding 226049 Mm.275572 NM_145831 ENSMUSG00000048138 Dmrt2 Terra - 19|19 C1 doublesex and mab-3 related transcription factor 2 protein-coding 108167696 Gm16218 - - 9 C|9 35.22 cM 40S ribosomal protein S15a pseudogene pseudo 52788 D10Bwg0322e - - - DNA segment, Chr 10, Brigham & Women's Genetics 0322 expressed unknown 96890 C79206 - - - expressed sequence C79206 unknown 100040295 Gm15035 - - X|X A4 predicted gene 15035 protein-coding 108168852 Gm38247 - - 3 C|3 40S ribosomal protein S20 pseudogene pseudo 102632531 Mm.417235 XR_377757 Gm30582 - - 6 C1|6 predicted gene, 30582 ncRNA 331507 Gm1866 Acp1-ps - X|X E1 acid phosphatase pseudogene pseudo 102637167 XR_867608 Gm34050 - - 3 G1|3 predicted gene, 34050 ncRNA 102633512 Mm.402748 Gm31322 - - 16|16 predicted gene, 31322 protein-coding 100043254 Mm.192092 NM_001163611 ENSMUSG00000073804 Nps - - 7|7 F3 neuropeptide S protein-coding 111915 Iapls3-66 - - - intracisternal A particle, lymphocyte specific, probe 3-66 other 102634636 XR_390452 Gm32173 - - 4 A5|4 predicted gene, 32173 ncRNA 52796 D10Jhu15e - - - DNA segment, Chr 10, Johns Hopkins University 15, expressed unknown 111556 Pmv51 Pmv-51 - - polytropic murine leukemia virus 51 other 102637147 XR_389652 Gm34031 - - 3 A3|3 predicted gene, 34031 ncRNA 102631751 XR_384641 Gm30012 - - 16 A1|16 predicted gene, 30012 ncRNA 100223 Mm.40637 9630041G16Rik AI848669 - - RIKEN cDNA 9630041G16 gene protein-coding 338364 Mm.439976 NM_178802 ENSMUSG00000054517 Trim65 4732463G12Rik - 11|11 E2 tripartite motif-containing 65 protein-coding 52494 D12Ertd129e - - 12 9.83 cM DNA segment, Chr 12, ERATO Doi 129, expressed unknown 102633106 XR_379933 Gm31014 - - 9 F3|9 predicted gene, 31014 ncRNA 320565 A730093K11Rik - - 11|11 RIKEN cDNA A730093K11 gene protein-coding 108168374 Gm46618 - - 18 E1|18 40S ribosomal protein S25 pseudogene pseudo 111780 Igk-V35 RF24 - - Immunoglobulin kappa chain variable 35 (V35) (RF24) other 100503808 Gm14925 - - X C3|X 42.69 cM HIG1 domain family member 1A-like pseudo 111612 Xmv39 Xmv-39 - - xenotropic murine leukemia virus 39 other 102631581 XR_390426 Gm29883 - - 4 A2|4 predicted gene, 29883 ncRNA 112310 Hcs5 - - 5 44.78 cM hepatocarcinogenesis susceptibility 5 unknown 78443 Mm.490703 NR_046195 ENSMUSG00000085900 A930041C12Rik - - 5|5 F RIKEN cDNA A930041C12 gene ncRNA 493180 Vtbt8 - - 9 46.41 cM vertebral trabecular bone trait 8 unknown 99516 AA589439 - - - expressed sequence AA589439 unknown 26926 Mm.240434 NM_012019 ENSMUSG00000036932 Aifm1 AIF|AIFsh2|Hq|Pdcd8 - X A5|X 25.68 cM apoptosis-inducing factor, mitochondrion-associated 1 protein-coding 102640016 Gm36191 - - 7|7 predicted gene, 36191 protein-coding 102636385 XR_375921 Gm16160 - - 3 F2.2|3 44.3 cM predicted gene 16160 ncRNA 77427 9430092D12Rik - - 16|16 RIKEN cDNA 9430092D12 gene protein-coding 102632357 Mm.399411 XR_390513 LOC102632357 - - 4 B1 uncharacterized LOC102632357 ncRNA 108240 Dppa5-ps6 Esg1-ps6|esg-1 - - developmental pluripotency associated 5, pseudogene 6 pseudo 268860 Mm.259315 NM_172961 ENSMUSG00000057880 Abat 9630038C02Rik|AI255750|Gabaat|Gabat|Gm9851|I54|Laibat|X61497 - 16|16 A1 4-aminobutyrate aminotransferase protein-coding 102637237 XR_379511 ENSMUSG00000111449 Gm34105 - - 9 B|9 predicted gene, 34105 ncRNA 100502585 Gm14903 - - X E1|X 49.47 cM SAP domain-containing ribonucleoprotein-like pseudo 359851 DXMgc3 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 3 unknown 116911 Mm.475565 NR_027871 ENSMUSG00000114867 Cts8-ps Cts2-ps - 13|13 B2 cathepsin 8, pseudogene pseudo 108950 Mm.212793 NM_175390 1700049L16Rik - - 10|10 B5.3 hematological and neurological expressed 1-like pseudogene pseudo 100041092 Gm10238 - - 15|15 D3 predicted pseudogene 10238 pseudo 54130 Mm.3118 NM_016860 ENSMUSG00000025228 Actr1a Arp1|alpha-Arp1 - 19|19 C3 ARP1 actin-related protein 1A, centractin alpha protein-coding 100035512 Tglq1 - - - triglyceride QTL 1 unknown 13325 Del(8)71H Del71H - - deletion, Chr 8, Harwell 71 other 359866 DXMgc79 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 79 unknown 625853 Mm.365699 NR_033507 Olfr1077-ps1 MOR189-4P - 2|2 D olfactory receptor 1077, pseudogene 1 pseudo 114290 Manh23 QTL-SH16.1 - - mandible shape 23 unknown 18349 Mm.358623 NM_146914 ENSMUSG00000096228 Olfr5 MOR103-8|ORL120 - 7|7 A1 olfactory receptor 5 protein-coding 320382 Mm.374877 E030030F06Rik - - 4|4 RIKEN cDNA E030030F06 gene protein-coding 102638676 XR_872344 Gm12107 - - 11 A4|11 18.64 cM predicted gene 12107 ncRNA 17137 Mm.377096 NM_020015 ENSMUSG00000096644 Magea1 Mage-a1 - X F3|X 72.38 cM melanoma antigen, family A, 1 protein-coding 665476 Gm7652 EG665476 - 5|5 E1 predicted gene 7652 pseudo 545741 Gm5863 EG545741 - X|X E1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 666381 Obox3-ps4 EG666381|Gm8072 - 7|7 A1 oocyte specific homeobox, pseudogene 4 pseudo 17877 Mm.4984 NM_008656 ENSMUSG00000000435 Myf5 B130010J22Rik|Myf-5|bHLHc2 - 10 D1|10 55.95 cM myogenic factor 5 protein-coding 18784 Mm.486532 NM_011110 ENSMUSG00000041193 Pla2g5 PLA2|sPLA2 - 4 D3|4 70.57 cM phospholipase A2, group V protein-coding 102639624 XR_391258 Gm35889 - - 7 B2|7 predicted gene, 35889 ncRNA 73331 Mm.460470 NR_040462 1700034P13Rik - - 1|1 A2 RIKEN cDNA 1700034P13 gene ncRNA 667052 Gm8436 EG667052 - 8|8 A4 serine (or cysteine) peptidase inhibitor, clade B, member 6b pseudogene pseudo 97106 C86098 - - - expressed sequence C86098 unknown 666584 XM_011243614 ENSMUSG00000112160 BC024063 - - 10|10 C1 cDNA sequence BC024063 protein-coding 76846 Mm.13944 NM_029767 ENSMUSG00000006333 Rps9 3010033P07Rik|AL022771|AL022885 - 7|7 A1 ribosomal protein S9 protein-coding 330804 E330022O07 - - 8|8 C1 uncharacterized protein E330022O07 protein-coding 18587 Mm.1372 NM_008806 ENSMUSG00000029491 Pde6b Pdeb|r|rd|rd-1|rd1|rd10 - 5 F|5 53.07 cM phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide protein-coding 68500 Mm.484045 1110008E08Rik - - 16|16 C3.3 RIKEN cDNA 1110008E08 gene unknown 109539 Tmevd3 - - 14 20.88 cM Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 3 unknown 319747 Mm.220632 C130023A14Rik - - 16|16 RIKEN cDNA C130023A14 gene protein-coding 110268 Ftl1-rs3 - - - ferritin light chain 1, related sequence 3 protein-coding 62016 D4Mit344 - - 4 83.82 cM DNA segment, Chr 4, Massachusetts Institute of Technology 344 unknown 14185 Fgfr3-ps - - 1|1 H4 fibroblast growth factor receptor 3, pseudogene pseudo 109280119 LOC109280119 Mm1368 - - VISTA enhancer mm1368 biological-region 100035042 Pnhdlc3 - - - plasma non-HDL cholesterol 3 unknown 60795 D3Mit70 - - 3 30.77 cM DNA segment, Chr 3, Massachusetts Institute of Technology 70 unknown 56454 Mm.233117 NM_019698 ENSMUSG00000025007 Aldh18a1 2810433K04Rik|AI429789|Pycs - 19|19 C3 aldehyde dehydrogenase 18 family, member A1 protein-coding 53310 Mm.4615 NM_016747 ENSMUSG00000000881 Dlg3 Dlgh3|SAP102|mKIAA1232 - X|X C3 discs large MAGUK scaffold protein 3 protein-coding 106725 Mm.426739 AU041480 - - - expressed sequence AU041480 protein-coding 105245978 XR_001781685 LOC105245978 - - 15 D3 uncharacterized LOC105245978 ncRNA 108168168 XR_001781317 Gm46459 - - 14 D2|14 predicted gene, 46459 ncRNA 216080 Mm.270530 NM_145420 ENSMUSG00000019927 Ube2d1 UBCH5 - 10|10 B5.3 ubiquitin-conjugating enzyme E2D 1 protein-coding 105245955 XR_875351 Gm41327 - - 15 D1|15 predicted gene, 41327 ncRNA 228790 Mm.330677 NM_001039939 ENSMUSG00000042548 Asxl1 mKIAA0978 - 2|2 H1 additional sex combs like 1 protein-coding 69025 Mm.396124 1500032P08Rik - - X|X RIKEN cDNA 1500032P08 gene protein-coding 735267 NR_030486 ENSMUSG00000076012 Mir705 Mirn705|mmu-mir-705 - 6 C3|6 microRNA 705 ncRNA 171034 Chab6 - - - cholesterol absorption 6 unknown 100035548 Aod3 - - 1 50.34 cM autoimmune ovarian dysgenesis 3 unknown 433367 Mm.359304 NR_132128 ENSMUSG00000073535 Gm5532 EG433367 - 1|1 G3 predicted gene 5532 ncRNA 100862043 XM_017318908 LOC100862043 - - - protein FAM205A-like protein-coding 58207 Mm.290729 NM_021398 ENSMUSG00000027074 Slc43a3 Eeg1|SEEEG-1 - 2|2 D solute carrier family 43, member 3 protein-coding 100125406 Femwf12 - - - femur work to failure 12 unknown 102636947 Gm33878 - - 6|6 predicted gene, 33878 ncRNA 224833 Mm.218444 NM_145489 ENSMUSG00000034382 AI661453 - - 17|17 C expressed sequence AI661453 protein-coding 103817 Mm.440945 AI662501 - - - expressed sequence AI662501 protein-coding 100416430 Gm18107 - - X|X B zinc finger protein 53 pseudogene pseudo 102638870 Gm29546 - - Y|Y predicted gene 29546 protein-coding 258896 Mm.377739 NM_001001810 ENSMUSG00000062757 Olfr1206 MOR230-3|Olfr1206-ps1|Olfr1207|Olfr1207-ps1 - 2|2 E1 olfactory receptor 1206 protein-coding 100035059 Lgq2 - - - late growth QTL 2 unknown 105246135 Gm41473 - - 16|16 predicted gene, 41473 ncRNA 319784 B830008M09Rik - - 14|14 RIKEN cDNA B830008M09 gene protein-coding 27740 23H6.Sp6 - - - DNA segment, 23H6.Sp6 (Roswell Park) unknown 102631632 XR_376952 Gm29924 - - 5 C1|5 predicted gene, 29924 ncRNA 102466157 NR_105828 ENSMUSG00000098563 Mir6402 Gm27764|mmu-mir-6402 - 4|4 C5 microRNA 6402 ncRNA 15132 Mm.440281 NM_008219 ENSMUSG00000052217 Hbb-bh1 betaH1 - 7 E3|7 54.85 cM hemoglobin Z, beta-like embryonic chain protein-coding 101055987 XM_006515297 Gm29758 - - 12 A1.2|12 predicted gene, 29758 protein-coding 102632566 XR_387803 Gm30605 - - 8 C2|8 predicted gene, 30605 ncRNA 100042321 Gm20909 - - Y|Y predicted gene, 20909 protein-coding 385211 Mm.276881 Zfp986 Gm13235 - 4|4 E1 zinc finger protein 986 protein-coding 11542 Mm.235024 NM_009631 ENSMUSG00000000562 Adora3 A3AR|A3R|AA3R|ARA3|Gpcr2 - 3 F2.2|3 46.45 cM adenosine A3 receptor protein-coding 18739 Mm.1860 NM_008851 ENSMUSG00000024851 Pitpnm1 DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1 - 19 A|19 3.81 cM phosphatidylinositol transfer protein, membrane-associated 1 protein-coding 100039063 XR_881316 Mup-ps8 Gm2028 - 4 B3|4 major urinary protein, pseudogene 8 ncRNA 100035108 Eae2b - - - experimental allergic encephalomyelitis susceptibility 2b unknown 666209 XM_006535314 ENSMUSG00000072814 Gm7982 EG666209 - 5|5 E3 predicted gene 7982 protein-coding 105243101 XM_017312479 LOC105243101 - - 7 F5 keratin-associated protein 5-1-like protein-coding 667411 Gm8616 EG667411 - 13|13 A1 ribonucleotide reductase M2 B (TP53 inducible) pseudogene pseudo 100125290 Chldq7 - - - cholesterol and HDL QTL 7 unknown 102643121 XR_878588 Gm38658 - - 1 F|1 predicted gene, 38658 ncRNA 233276 Mm.284306 NM_146190 ENSMUSG00000033790 Tubgcp5 B130010C12Rik|GCP5|mKIAA1899 - 7|7 B5 tubulin, gamma complex associated protein 5 protein-coding 21854 Mm.2368 NM_011590 ENSMUSG00000062580 Timm17a Tim17a|mTim17a - 1|1 E4 translocase of inner mitochondrial membrane 17a protein-coding 320952 Mm.100944 NR_155503 A730013G03Rik - - 1|1 H6 RIKEN cDNA A730013G03 gene ncRNA 105246048 Gm41407 - - 15|15 predicted gene, 41407 ncRNA 110172 Mm.4593 NM_016752 ENSMUSG00000020873 Slc35b1 UGTrel1|Ugalt2 - 11 D|11 59.01 cM solute carrier family 35, member B1 protein-coding 76469 Mm.33857 NM_023821 ENSMUSG00000047419 Cmya5 2310076E16Rik|2310076E21Rik|AA420382|AI504003|Srfsd|Tims|sr553 - 13|13 C3 cardiomyopathy associated 5 protein-coding 102631664 Gm29947 - - 19|19 predicted gene, 29947 pseudo 240283 Mm.257790 NM_001081371 ENSMUSG00000037416 Dmxl1 C630007L23Rik|D030030C22 - 18|18 D1 Dmx-like 1 protein-coding 216238 Mm.210035 NM_001001932 ENSMUSG00000036499 Eea1 A430109M19Rik|B230358H09Rik|ZFYVE2 - 10|10 C2 early endosome antigen 1 protein-coding 100035426 Tbt3 - - - trabecular bone traits 3 unknown 100036101 Spnw2 - - - spleen weight 2 unknown 102640267 Gm36378 - - 5|5 predicted gene, 36378 pseudo 110558 Mm.431282 NM_001201460 H2-Q9 H-2Q9|Ped|Qa-2|Qa-9|Qa9 - 17|17 histocompatibility 2, Q region locus 9 protein-coding 629101 Gm6947 EG629101 - 1|1 C3 predicted gene 6947 pseudo 102636732 XR_373429 Gm33724 - - 1 C1.3|1 predicted gene, 33724 ncRNA 108167619 XR_001778889 LOC108167619 - - 1 B nucleoside diphosphate kinase, mitochondrial pseudogene pseudo 100035191 Ses8 - - 4 10.61 cM salmonella enteritidis susceptibility 8 unknown 14120 Mm.391871 NM_007994 ENSMUSG00000021456 Fbp2 Fbp-1|Fbp1|Rae-30 - 13|13 B3 fructose bisphosphatase 2 protein-coding 235633 Mm.86338 NM_146228 ENSMUSG00000044037 Als2cl 79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018 - 9 F2|9 60.79 cM ALS2 C-terminal like protein-coding 18459 Mm.9493 NM_011033 ENSMUSG00000051732 Pabpc2 Pabp|Pabp+|Pabp2 - 18|18 B3 poly(A) binding protein, cytoplasmic 2 protein-coding 105243046 XR_869921 Gm39081 - - 7 F2|7 predicted gene, 39081 ncRNA 546298 Rps2-ps13 Gm14583 - X A5|X ribosomal protein S2, pseudogene 13 pseudo 18400 Mm.271740 NM_008767 ENSMUSG00000000154 Slc22a18 AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A - 7 F5|7 88.22 cM solute carrier family 22 (organic cation transporter), member 18 protein-coding 791292 Mm.251409 XM_006530513 ENSMUSG00000107108 Gm9936 - - 5 F|5 predicted gene 9936 protein-coding 102467519 n-TEctc6 n-Te6 - 1 H3|1 nuclear encoded tRNA glutamic acid 6 (anticodon CTC) tRNA 100040728 Gm13017 - - 4|4 D3 predicted gene 13017 protein-coding 111303 Hmgn2-rs9 Hmg17-rs9 - - high mobility group nucleosomal binding domain 2, related sequence 9 pseudo 105245700 XR_874422 Gm41111 - - 14 A3|14 predicted gene, 41111 ncRNA 102636729 XR_378434 Gm33721 - - 7 F1|7 predicted gene, 33721 ncRNA 14388 Mm.277409 NM_021356 ENSMUSG00000031714 Gab1 AA408973|AW107238 - 8|8 C2 growth factor receptor bound protein 2-associated protein 1 protein-coding 100036482 Mmtp3 - - 9 32.76 cM modifier of mammary tumor progression 3 unknown 233046 Mm.465324 NM_145149 ENSMUSG00000030589 Rasgrp4 - - 7 16.94 cM|7 B1 RAS guanyl releasing protein 4 protein-coding 108168268 XR_001781779 Gm46539 - - 15 F3|15 predicted gene, 46539 ncRNA 69611 Mm.176243 NM_027137 ENSMUSG00000103243 Lce1d 2310037L11Rik|AI415320|Sprrl7 - 3|3 F1 late cornified envelope 1D protein-coding 100417449 Gm14907 - - X|X E1 heat shock protein 1 (chaperonin) pseudogene pseudo 61751 D4Mit252 - - 4 75.06 cM DNA segment, Chr 4, Massachusetts Institute of Technology 252 unknown 105244807 XR_868664 Gm40352 - - 5 G2|5 predicted gene, 40352 ncRNA 625462 Gm11888 - - 4|4 A3 ribosomal protein S2 pseudogene pseudo 268510 Mm.35141 NM_172948 ENSMUSG00000043857 Mgat5b C330018B01|GnT-IX|mGnTVB - 11|11 E2 mannoside acetylglucosaminyltransferase 5, isoenzyme B protein-coding 102642864 LOC102642864 - - - 60S ribosomal protein L32 protein-coding 101055840 XR_001778139 Gm29729 - - 7 C|7 predicted gene, 29729 ncRNA 100036357 Nilac3 - - 2 86.02 cM nicotine induced locomotor activity 3 unknown 112386 Eae8 - - 2 100.49 cM experimental allergic encephalomyelitis susceptibility 8 unknown 61041 DXMit162 - - X 6.26 cM DNA segment, Chr X, Massachusetts Institute of Technology 162 unknown 70560 Mm.316754 NM_027462 ENSMUSG00000004233 Wars2 5730427B17Rik|9430020O07Rik|AI413375|TrpRS - 3|3 F2.2 tryptophanyl tRNA synthetase 2 (mitochondrial) protein-coding 100043920 NM_001357590 ENSMUSG00000078746 Fam205a4 Fam205a|Gm20938 - 4 A5|4 family with sequence similarity 205, member A4 protein-coding 74156 Mm.275963 NM_028790 ENSMUSG00000021620 Acot12 1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1 - 13|13 C3 acyl-CoA thioesterase 12 protein-coding 97699 C77808 - - - expressed sequence C77808 protein-coding 381498 Mm.402095 NR_152231 ENSMUSG00000105834 4930592C13Rik Gm1657|Gm43159 - 3|3 H4 RIKEN cDNA 4930592C13 gene ncRNA 62340 D19Mit85 - - 19 13.17 cM DNA segment, Chr 19, Massachusetts Institute of Technology 85 unknown 108168944 LOC108168944 - - 4 A1 coiled-coil-helix-coiled-coil-helix domain-containing protein 2 pseudogene pseudo 102637425 XR_386618 Gm34235 - - 19 B|19 predicted gene, 34235 ncRNA 64449 Zfp279 - - - zinc finger protein 279 protein-coding 100036203 Asbb2 sbb2 - - autoimmune susceptibility in C57BL/6J and BALB/c 2 unknown 100504124 Gm11936 - - 4|4 14.3 cM DNA-directed RNA polymerases I, II, and III subunit RPABC4-like pseudo 100417239 Gm18476 - - 15|15 E3 NMD3 homolog pseudogene pseudo 17600 Ms18 MMS18 - - minisatellites detected by probe MMS18 other 100040484 Mm.122625 Gm2800 - - 12 F1|12 predicted gene 2800 unknown 102637661 Gm34415 - - 14 A3|14 predicted gene, 34415 pseudo 100504245 Gm29694 - - 2 E1|2 zinc finger protein 862 pseudogene pseudo 668342 Gm9114 EG668342 - 7 B1|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 14944 Mm.14868 NM_010375 ENSMUSG00000040284 Gzmg Ctla-7|Ctla7 - 14 C3|14 28.19 cM granzyme G protein-coding 102634065 LOC102634065 - - X F1 protein transport protein Sec61 subunit gamma pseudogene pseudo 102638352 XR_388956 Gm34938 - - 11 D|11 predicted gene, 34938 ncRNA 319979 Mm.405979 C820005J03Rik - - 3|3 C RIKEN cDNA C820005J03 gene unknown 667936 Igkv3-6 Igk-V21-6 - 6|6 C1 immunoglobulin kappa variable 3-6 pseudo 102632622 LOC102632622 - - X A7.1 prothymosin alpha pseudogene pseudo 109618 Ubb1 - - - ubiquitin 1 protein-coding 258086 Mm.377345 NM_001011826 ENSMUSG00000055820 Olfr967 MOR171-30P - 9|9 A5.1 olfactory receptor 967 protein-coding 102467324 n-TIaat8 n-Ti8 - 13 A3.1|13 nuclear encoded tRNA isoleucine 8 (anticodon AAT) tRNA 111638 Ms6-6 - - - minisatellite-6 detected by probe 33.6 other 102639454 XR_377271 Gm35763 - - 5 G3|5 predicted gene, 35763 ncRNA 105246386 XR_877264 Gm41680 - - 18 B1|18 predicted gene, 41680 ncRNA 23790 Mm.260158 NM_011779 ENSMUSG00000004530 Coro1c AL022675|AW455561|AW548837 - 5|5 F coronin, actin binding protein 1C protein-coding 102631670 LOC102631670 - - 4 D2.2 60S ribosomal protein L26-like 1 pseudogene pseudo 258436 Mm.377501 NM_146444 ENSMUSG00000068574 Olfr458 MOR211-8P|MOR221-4|MOR257-4|Olfr301 - 6|6 B2.1 olfactory receptor 458 protein-coding 77632 Mm.31283 NM_029948 ENSMUSG00000028591 Pramef12 4930569K13Rik|AU023001|C86578 - 4|4 E1 PRAME family member 12 protein-coding 668267 Gm9075 EG668267 - 12|12 A1.1 predicted gene 9075 pseudo 62545 D11Mit191 - - 11 28.31 cM DNA segment, Chr 11, Massachusetts Institute of Technology 191 unknown 667830 Gm8837 EG667830 - 6|6 F3 predicted gene 8837 pseudo 105744 AA516939 - - - expressed sequence AA516939 unknown 73392 1700056N10Rik - - 16|16 RIKEN cDNA 1700056N10 gene protein-coding 102633488 Gm31302 - - 7|7 predicted gene, 31302 ncRNA 100036360 Lbn2 LBN2.1 - - long bones 2 unknown 13124 Mm.20889 NM_010012 ENSMUSG00000050445 Cyp8b1 - - 9 72.73 cM|9 F4 cytochrome P450, family 8, subfamily b, polypeptide 1 protein-coding 76829 Mm.41633 NM_029761 ENSMUSG00000027560 Dok5 2700055C10Rik - 2 H3|2 92.26 cM docking protein 5 protein-coding 105246191 Gm41524 - - 17|17 predicted gene, 41524 ncRNA 258310 Mm.377430 NM_146313 ENSMUSG00000066748 Olfr145 K21|MOR161-6 - 9|9 A4 olfactory receptor 145 protein-coding 56370 Mm.24183 NM_019754 ENSMUSG00000022658 Tagln3 2700038H05Rik|2900005O10Rik|AI426007|Np25 - 16|16 B5 transgelin 3 protein-coding 13479 Mm.20388 NM_007876 ENSMUSG00000019278 Dpep1 AI327012|MBD - 8 E1|8 72.08 cM dipeptidase 1 (renal) protein-coding 75452 Mm.439906 NM_029291 ENSMUSG00000020412 Ascc2 1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480 - 11|11 A1 activating signal cointegrator 1 complex subunit 2 protein-coding 100040151 Mm.120496 Gm2629 - - 18 A1|18 aldehyde dehydrogenase 9, subfamily A1 pseudogene pseudo 382342 Tpi-rs5 EG382342|Tpi-5 - 10 A3|10 8.15 cM triosephosphate isomerase related sequence 5 pseudo 105243293 Gm39255 - - 8|8 predicted gene, 39255 ncRNA 60441 Mm.29974 NM_024177 ENSMUSG00000020775 Mrpl38 1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3 - 11|11 E2 mitochondrial ribosomal protein L38 protein-coding 71038 Mm.410798 NR_040540 ENSMUSG00000106306 4933401H06Rik - - 3|3 G3 RIKEN cDNA 4933401H06 gene ncRNA 258487 Mm.270514 NM_146494 ENSMUSG00000048933 Olfr722 MOR241-3 - 14|14 C1 olfactory receptor 722 protein-coding 100862352 Gm29697 - - 15 B3.1|15 predicted gene, 29697 pseudo 27687 D11Moh12 - - - DNA segment, Chr 11, KL Mohlke 12 unknown 546036 Mm.31785 NR_131136 ENSMUSG00000110058 Gm5907 EG546036|Gm45519|Gm845 - 8|8 A1.1 predicted gene 5907 ncRNA 110120559 LOC110120559 - - - VISTA enhancer mm1488 biological-region 106347 Mm.17807 NM_134109 ENSMUSG00000022900 Ildr1 AU041483|AU044638 - 16|16 B3 immunoglobulin-like domain containing receptor 1 protein-coding 102635942 XR_389476 Gm33151 - - 5 E5|5 predicted gene, 33151 ncRNA 237178 Mm.296779 NM_011147 ENSMUSG00000062168 Ppef1 PPEF-1 - X F4|X 73.95 cM protein phosphatase with EF hand calcium-binding domain 1 protein-coding 27868 D11Moh42e - - - DNA segment, Chr 11, KL Mohlke 42 expressed unknown 665819 Gm7804 EG665819 - 1 H3|1 ribosomal protein SA pseudogene pseudo 78534 C430005N20Rik - - 19|19 RIKEN cDNA C430005N20 gene protein-coding 70866 Mm.389164 NM_027584 ENSMUSG00000026336 Slco6d1 4921511I05Rik - 1|1 D solute carrier organic anion transporter family, member 6d1 protein-coding 102634891 Scgb2b28-ps Abpbg28-ps - 7|7 secretoglobin, family 2B, member 28, pseudogene pseudo 62753 D17Mit198 - - 17 14.59 cM DNA segment, Chr 17, Massachusetts Institute of Technology 198 unknown 112344 Feml1 - - - femur length in high growth mice 1 unknown 668606 Gm9266 EG668606 - 7|7 B3 predicted gene 9266 pseudo 108220 Ifi56-ps1 - - - interferon inducible protein 56, pseudogene 1 pseudo 102467647 n-TIaat1 n-Ti1 - 16 C3.1|16 nuclear encoded tRNA isoleucine 1 (anticodon AAT) tRNA 102636567 XR_390690 Gm33597 - - 4 C4|4 predicted gene, 33597 ncRNA 100036303 Lith21 - - 10 12.51 cM lithogenic gene 21 unknown 16177 Mm.896 NM_008362 ENSMUSG00000026072 Il1r1 CD121a|CD121b|IL-1R1|IL-iR|Il1r-1 - 1 B|1 18.81 cM interleukin 1 receptor, type I protein-coding 105246415 XR_877341 Gm41705 - - 18 B3|18 predicted gene, 41705 ncRNA 76688 Mm.87720 NM_029702 ENSMUSG00000038671 Arfrp1 1500006I01Rik|AI480700 - 2|2 H4 ADP-ribosylation factor related protein 1 protein-coding 61966 D8Mit298 - - 8 27.05 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 298 unknown 105111 AI043046 - - - expressed sequence AI043046 unknown 85094 D7Mit63 - - 7 57.21 cM DNA segment, Chr 7, Massachusetts Institute of Technology 63 unknown 93691 Mm.29466 NM_033563 ENSMUSG00000025959 Klf7 9830124P08Rik - 1|1 C2 Kruppel-like factor 7 (ubiquitous) protein-coding 66362 Mm.275788 NM_025513 ENSMUSG00000028322 Exosc3 2310005D06Rik|AI593501|Rrp40 - 4|4 B1 exosome component 3 protein-coding 108168202 XR_001781474 Gm46486 - - 14 B|14 predicted gene, 46486 ncRNA 105244300 XR_866743 Gm14304 - - 2 F1|2 63.4 cM predicted gene 14304 ncRNA 258624 Mm.272073 NM_146631 ENSMUSG00000063994 Olfr120 MOR263-3 - 17|17 B1 olfactory receptor 120 protein-coding 71106 Mm.158564 NR_038005 ENSMUSG00000021874 4933413J09Rik GCSE - 14|14 A3 RIKEN cDNA 4933413J09 gene ncRNA 108168510 XM_017318702 ENSMUSG00000101157 LOC108168510 - - Y B X-linked lymphocyte-regulated protein PM1-like protein-coding 105244317 XR_866793 Gm39951 - - 2 G1|2 predicted gene, 39951 ncRNA 30049 Mm.480594 NM_024450 ENSMUSG00000025202 Scd3 4930513N16Rik - 19|19 C3 stearoyl-coenzyme A desaturase 3 protein-coding 108169143 LOC108169143 - - 6 B3 dynactin subunit 5 pseudogene pseudo 102636606 XR_872093 Gm33624 - - 10 D2|10 predicted gene, 33624 ncRNA 667693 Mm.425810 NM_001244649 ENSMUSG00000094918 Gm8765 EG667693 - 13 A5|13 predicted gene 8765 protein-coding 105245493 XR_873371 Gm40941 - - 13 A5|13 predicted gene, 40941 ncRNA 116736 Cocrb3 - - - cocaine related behavior 3 unknown 102633147 Gm31049 - - 5 C3.3|5 predicted gene, 31049 pseudo 109280147 LOC109280147 Mm1348 - - VISTA enhancer mm1348 biological-region 102635614 XR_391663 Gm32904 - - X A3.3|X predicted gene, 32904 ncRNA 76237 Mm.101606 NM_001357060 ENSMUSG00000034185 6430628N08Rik - - 4|4 D1 RIKEN cDNA 6430628N08 gene protein-coding 102639243 XR_875545 Gm35599 - - 15 E3|15 predicted gene, 35599 ncRNA 78500 Mm.275715 NR_040392 ENSMUSG00000100837 1700063D05Rik - - 9|9 A5.1 RIKEN cDNA 1700063D05 gene ncRNA 436332 Mm.478141 NM_001013830 ENSMUSG00000089645 Gm5766 EG436332 - 16 A1|16 ribosomal protein L7a pseudogene pseudo 110738 Odc-rs17 - - - ornithine decarboxylase, related sequence 17 protein-coding 105242785 XR_869480 Gm38906 - - 6 F3|6 predicted gene, 38906 ncRNA 111880 Iap3rc8 - - - intracisternal A-type particle, U3 region, SINE repeat c-8 other 19360 Mm.4888 NM_009012 ENSMUSG00000020380 Rad50 Mrell|Rad50l - 11 B1.3|11 31.98 cM RAD50 double strand break repair protein protein-coding 56017 Mm.305754 NM_019488 ENSMUSG00000026791 Slc2a8 D2Ertd44e|GLUT8|GlutX1 - 2 B|2 22.09 cM solute carrier family 2, (facilitated glucose transporter), member 8 protein-coding 20269 Mm.330256 NM_018732 ENSMUSG00000057182 Scn3a Gm1000|Nav1.3 - 2 C1.3|2 38.55 cM sodium channel, voltage-gated, type III, alpha protein-coding 21130 T(2;4)13H T13H - - reciprocal translocation, Chr 2 and 4, Harwell 13 other 100041421 Gm3326 - - 14|14 A1 ribosomal protein L3 pseudogene pseudo 67510 Mm.9806 NM_026210 ENSMUSG00000014177 Tvp23b 1810036I24Rik|Fam18b|Fam18b1 - 11|11 B2 trans-golgi network vesicle protein 23B protein-coding 66715 Mm.158124 NM_025723 ENSMUSG00000045662 Henmt1 4921515J06Rik|Hen1|mHEN1 - 3|3 F3 HEN1 methyltransferase homolog 1 (Arabidopsis) protein-coding 23873 Mm.74605 NM_011810 ENSMUSG00000032463 Faim - - 9|9 E3.3 Fas apoptotic inhibitory molecule protein-coding 108168984 XR_001784486 LOC108168984 - - 4 E1 uncharacterized LOC108168984 ncRNA 105245930 XR_001781662 Gm41308 - - 15 B3.1|15 predicted gene, 41308 ncRNA 71026 Mm.158536 NM_027650 ENSMUSG00000067855 Speer3 4933405P08Rik|SPEER-3 - 5|5 A1 spermatogenesis associated glutamate (E)-rich protein 3 protein-coding 170835 Mm.24313 NM_172439 ENSMUSG00000034570 Inpp5j Pib5pa|Pipp - 11|11 A1 inositol polyphosphate 5-phosphatase J protein-coding 56212 Mm.259795 NM_019566 ENSMUSG00000073982 Rhog 2810426G09Rik|Arhg|Sid10750 - 7|7 E2 ras homolog family member G protein-coding 102632059 XR_380601 Gm30232 - - 10 C1|10 predicted gene, 30232 ncRNA 100035269 Eppiq2 - - - elevated prepulse inhibition QTL 2 unknown 229600 Mm.89556 NM_153513 ENSMUSG00000038543 BC028528 L259 - 3|3 F2.1 cDNA sequence BC028528 protein-coding 244954 Mm.257629 NM_178738 ENSMUSG00000033491 Prss35 6030424L22Rik|P3D9 - 9|9 E3.1 protease, serine 35 protein-coding 75890 Mm.141235 NR_045982 ENSMUSG00000100727 1700003P14Rik 1700030O10Rik|4930584L06Rik - 13|13 D2.3 RIKEN cDNA 1700003P14 gene ncRNA 109437 Etlm1 - - - ethanol induced locomotion 1 unknown 54401 Mm.34319 NM_018753 ENSMUSG00000018326 Ywhab 1300003C17Rik|14-3-3b - 2|2 H3 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide protein-coding 110310 Mm.486285 NM_033073 ENSMUSG00000023039 Krt7 D15Wsu77e|K7|Krt2-7 - 15 F2|15 56.88 cM keratin 7 protein-coding 74360 Mm.157212 NM_026665 ENSMUSG00000031922 Cep57 3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092 - 9|9 A1 centrosomal protein 57 protein-coding 106780822 Obox4-ps38 Gm20709 - 7 A1|7 8.32 cM oocyte specific homeobox 4, pseudogene 38 pseudo 64248 Snord116l5 Gm24658|Pwcr1l5 - - small nucleolar RNA, C/D box 116-like 5 snoRNA 102636520 XR_379631 Gm33562 - - 9 D|9 predicted gene, 33562 ncRNA 105245336 Gm26923 - - 10|10 predicted gene, 26923 pseudo 620400 Igkv8-21 Igk-V8-21 - 6|6 C1 immunoglobulin kappa variable 8-21 other 69305 Mm.229110 NM_027030 ENSMUSG00000032040 Dcps 1700001E16Rik|AA408441 - 9|9 A4 decapping enzyme, scavenger protein-coding 11933 Mm.424 NM_007502 ENSMUSG00000032412 Atp1b3 AA409958|AI664000|AW212096 - 9 E3.3|9 50.31 cM ATPase, Na+/K+ transporting, beta 3 polypeptide protein-coding 404250 Mrgpra19 MrgA19 - - MAS-related GPR, member A19 protein-coding 492879 Berr2 - - 11 80.84 cM berghei resistance locus 2 unknown 233571 Mm.235193 NM_183168 ENSMUSG00000048779 P2ry6 2010204J23Rik|P2Y6 - 7|7 E2 pyrimidinergic receptor P2Y, G-protein coupled, 6 protein-coding 100040642 Gm2878 - - 14|14 B predicted gene 2878 pseudo 61744 D4Mit272 - - 4 28.65 cM DNA segment, Chr 4, Massachusetts Institute of Technology 272 unknown 61196 D1Mit121 - - 1 13.34 cM DNA segment, Chr 1, Massachusetts Institute of Technology 121 unknown 102639168 XR_388013 Gm35543 - - 8 D3|8 predicted gene, 35543 ncRNA 777660 Ighd2-10 Igh - 12|12 F2 immunoglobulin heavy diversity 2-10 other 68945 Mm.57381 1500002J14Rik - - 8|8 RIKEN cDNA 1500002J14 gene protein-coding 100126099 Gm17791 - - 7|7 B3 baculoviral IAP repeat-containing 4 pseudogene pseudo 74131 Mm.276131 NM_028773 ENSMUSG00000031101 Sash3 1200013B08Rik|AW413946|SLY1 - X|X A5 SAM and SH3 domain containing 3 protein-coding 14723 Mm.377085 NM_010326 ENSMUSG00000050675 Gp1ba GP-Ib alpha|GPIba|GPIbalpha - 11 B3|11 43.2 cM glycoprotein 1b, alpha polypeptide protein-coding 108167645 XR_001779132 Gm46108 - - 9 A5.1|9 predicted gene, 46108 ncRNA 102640375 Mm.319773 XR_383498 Gm17116 - - 14 D1|14 33.36 cM predicted gene 17116 ncRNA 100312565 Vmn1r-ps139 - - 17 A3.2|17 vomeronasal 1 receptor, pseudogene 139 pseudo 105245586 XR_873804 Gm41018 - - 13 C3|13 predicted gene, 41018 ncRNA 100504232 Mm.482546 NM_001205011 ENSMUSG00000079180 Mptx2 Gm11062 - 1 H3|1 80.33 cM mucosal pentraxin 2 protein-coding 102636896 Mm.355517 XR_386610 2410080I02Rik - - 19|19 B RIKEN cDNA 2410080I02 gene ncRNA 100036159 Pbmd2 - - 2 47.93 cM peak bone mineral density 2 unknown 214763 Mm.101559 NM_173386 ENSMUSG00000032344 Mb21d1 E330016A19Rik|cGAS - 9|9 E1 Mab-21 domain containing 1 protein-coding 100093681 Trnac-gca - - - transfer RNA cysteine (anticodon GCA) tRNA 103364 Mm.370587 AU022934 - - - expressed sequence AU022934 unknown 14072 fa - - - falter unknown 234669 Mm.443387 NM_198171 ENSMUSG00000050097 Ces2b - - 8|8 D3 carboxyesterase 2B protein-coding 62443 D10Mit283 - - 10 9.75 cM DNA Segment, Chr 10 Massachusetts Institute of Technology 283 unknown 70422 Mm.171304 NM_027421 ENSMUSG00000018068 Ints2 2810417D08Rik|AA408260|AI987735|mKIAA1287 - 11|11 C integrator complex subunit 2 protein-coding 100042921 Mm.291126 NM_001105179 ENSMUSG00000058685 Vmn2r51 - - 7|7 A1 vomeronasal 2, receptor 51 protein-coding 50758 Mm.136366 NM_015794 ENSMUSG00000023965 Fbxl17 6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13 - 17|17 E1.1 F-box and leucine-rich repeat protein 17 protein-coding 85136 DXMit147 - - X 39.95 cM DNA segment, Chr X, Massachusetts Institute of Technology 147 unknown 68941 Mm.188175 XR_866971 1110018N20Rik 1190017L20Rik - 2|2 H3 RIKEN cDNA 1110018N20 gene unknown 102639755 XR_382321 Gm35991 - - 13 A5|13 predicted gene, 35991 ncRNA 105247200 XR_881555 Gm42339 - - 4 E1|4 predicted gene, 42339 ncRNA 359984 DXMgc121 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 121 unknown 26437 Mm.302844 NM_007677 ENSMUSG00000004540 Psg17 Cea-2|Cea2|mmCGM5 - 7 A3|7 9.33 cM pregnancy specific glycoprotein 17 protein-coding 258699 Mm.451657 NM_146704 ENSMUSG00000057817 Olfr1446 MOR202-2 - 19|19 A olfactory receptor 1446 protein-coding 60759 D2Mit55 - - 2 78.48 cM DNA segment, Chr 2, Massachusetts Institute of Technology 55 unknown 20525 Mm.21002 NM_011400 ENSMUSG00000028645 Slc2a1 Glut-1|Glut1 - 4 D2.1|4 55.34 cM solute carrier family 2 (facilitated glucose transporter), member 1 protein-coding 100041006 Gm11960 - - 11|11 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 51801 Mm.3272 NM_016894 ENSMUSG00000034353 Ramp1 9130218E19Rik - 1 D|1 46.08 cM receptor (calcitonin) activity modifying protein 1 protein-coding 62972 D15Mit239 - - 15 37.58 cM DNA Segment, Chr 15, Massachusetts Institute of Technology 239 unknown 97850 C76411 - - - expressed sequence C76411 protein-coding 320569 Mm.446009 NM_177194 A130023I24Rik - - 7|7 F3 RIKEN cDNA A130023I24 gene unknown 102633305 XR_388071 Gm31164 - - 8 E1|8 predicted gene, 31164 ncRNA 19459 Rb(10.12)17Rma Rb17Rma - - Robertsonian translocation, Chr 10 and 12, Universita di Roma 17 other 387169 NR_029561 ENSMUSG00000065612 Mir151 Mirn151|mir-151|mmu-mir-151 - 15|15 D3 microRNA 151 ncRNA 100045792 Mm.380617 NM_001195036 ENSMUSG00000071392 Ect2l C330021H03Rik|Gm10331 - 10|10 A3 epithelial cell transforming sequence 2 oncogene-like protein-coding 112391 Eae44a Eae6|Eae6a - 11 10.57 cM experimental allergic encephalomyelitis susceptibility 44a unknown 100417737 Zfp36l1-ps Gm14556 - X|X A3.3 zinc finger protein 36, C3H type-like 1, pseudogene pseudo 74042 Mm.84774 NM_001009544 ENSMUSG00000023350 4921501E09Rik PHF8 - 17|17 B1 RIKEN cDNA 4921501E09 gene protein-coding 100526556 NR_037274 ENSMUSG00000092827 Mir3091 mir-3091|mmu-mir-3091 - 2 H4|2 102.78 cM microRNA 3091 ncRNA 21417 Mm.3929 NM_011546 ENSMUSG00000024238 Zeb1 3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1 - 18 4.42 cM|18 A1 zinc finger E-box binding homeobox 1 protein-coding 74560 9130414P19Rik - - 1|1 RIKEN cDNA 9130414P19 gene protein-coding 78040 Mm.4465 4930550L05Rik - - 2|2 RIKEN cDNA 4930550L05 gene protein-coding 102634812 Mm.390379 NR_136931 LOC102634812 - - 11 E2 ribosomal protein L39 pseudogene pseudo 665073 Gm7478 EG665073 - 5|5 F predicted gene 7478 pseudo 78353 Mm.426240 NR_126553 ENSMUSG00000096917 2500002B13Rik - - 8|8 B2 RIKEN cDNA 2500002B13 gene ncRNA 100302654 Gm17813 - - 1|1 B ATPase, H+ transporting, lysosomal V1 subunit G1 pseudogene pseudo 100040759 Gm2951 - - 14|14 B predicted gene 2951 pseudo 58518 Mm.143794 NM_021445 ENSMUSG00000021441 Cts6 1600022N02Rik - 13 B2|13 32.67 cM cathepsin 6 protein-coding 63024 D17Mit168 - - 17 19.74 cM DNA segment, Chr 17, Massachusetts Institute of Technology 168 unknown 70985 Mm.444761 4931406E20Rik - - 11|11 RIKEN cDNA 4931406E20 gene protein-coding 108167457 XR_001778265 Gm45999 - - 7 F1|7 predicted gene, 45999 ncRNA 105243467 XR_870949 Gm39382 - - 9 E2|9 predicted gene, 39382 ncRNA 665468 Gm7646 EG665468 - 5|5 E1 predicted gene 7646 pseudo 15148 Hc17 Cen17 - - heterochromatin, Chr 17 other 66376 LOC66376 - - 2|2 H4 uncharacterized LOC66376 unknown 102634555 Gm32107 - - 18|18 predicted gene, 32107 ncRNA 116766 Cocrb12 - - - cocaine related behavior 12 unknown 66596 Mm.196528 NM_025652 ENSMUSG00000016503 Gtf3a 2010015D03Rik|2610111I01Rik|5330403M05Rik - 5|5 G3 general transcription factor III A protein-coding 105245067 Mm.416911 XR_001780537 Gm16087 - - 12 F1|12 57.65 cM predicted gene 16087 ncRNA 107951 Mm.27557 NM_130860 ENSMUSG00000009555 Cdk9 PITALRE - 2|2 B cyclin-dependent kinase 9 (CDC2-related kinase) protein-coding 271564 Mm.211963 NM_173028 ENSMUSG00000046230 Vps13a 4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986 - 19|19 A-B vacuolar protein sorting 13A protein-coding 62646 D14Mit157 - - 14 34.66 cM DNA segment, Chr 14, Massachusetts Institute of Technology 157 unknown 102636152 Mm.462271 XR_384186 Gm28068 - - 15 D3|15 predicted gene 28068 ncRNA 624086 Mm.390933 A230045G11Rik EG624086 - 17|17 A1 RIKEN cDNA A230045G11 gene unknown 110323 Mm.400 NM_025628 ENSMUSG00000036751 Cox6b1 2010000G05Rik|Cox6b - 7 B1|7 18.84 cM cytochrome c oxidase, subunit VIb polypeptide 1 protein-coding 76477 Mm.46016 NM_029620 ENSMUSG00000015354 Pcolce2 2400001O18Rik|Pcpe2 - 9|9 E3.3 procollagen C-endopeptidase enhancer 2 protein-coding 105246533 Gm41807 - - 19|19 predicted gene, 41807 ncRNA 57276 Mm.27478 NM_020518 ENSMUSG00000001943 Vsig2 1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm - 9|9 A4 V-set and immunoglobulin domain containing 2 protein-coding 100041279 XR_874204 Gm3248 - - 14 A1|14 predicted gene 3248 protein-coding 108368 Mtv51 Mtv-51 - - mammary tumor virus locus 51 other 625548 Gm6599 EG625548 - 16|16 C4 predicted gene 6599 pseudo 62149 D13Mit91 - - 13 24.5 cM DNA segment, Chr 13, Massachusetts Institute of Technology 91 unknown 102638604 XR_380879 Gm35130 - - 10 D2|10 predicted gene, 35130 ncRNA 223646 Mm.288368 NM_172607 ENSMUSG00000022574 Naprt 9130210N20Rik|Naprt1 - 15|15 D3 nicotinate phosphoribosyltransferase protein-coding 76104 5830472F04Rik C78921 - - RIKEN cDNA 5830472F04 gene protein-coding 212933 Mm.23844 NM_178079 ENSMUSG00000042251 Pm20d1 4732466D17Rik|AI098026 - 1|1 E4 peptidase M20 domain containing 1 protein-coding 329207 Mm.295940 NM_001033408 ENSMUSG00000070732 Rbm44 Gm817 - 1|1 D RNA binding motif protein 44 protein-coding 627835 Rps12-ps19 Gm12334 - 11|11 B5 ribosomal protein S12, pseudogene 19 pseudo 497106 Mm.379740 NM_001011875 ENSMUSG00000068407 Rnase12 Rai1 - 14|14 C1 ribonuclease, RNase A family, 12 (non-active) protein-coding 73696 Mm.1361 NR_040652 ENSMUSG00000085824 Platr9 2410114N07Rik - 4|4 A5 pluripotency associated transcript 9 ncRNA 62822 D13Mit249 - - 13 27.65 cM DNA segment, Chr 13, Massachusetts Institute of Technology 249 unknown 102640834 XR_380779 Gm36808 - - 10 D1|10 predicted gene, 36808 ncRNA 100417640 Gm18730 - - 10|10 D2 mitochondrial ribosomal protein S11 pseudogene pseudo 230765 Gm4864 EG230765 - 12|12 C3 histone deacetylase 1 pseudogene pseudo 100503733 XM_003085647 ENSMUSG00000094741 LOC100503733 - - - PRAME family member 8-like protein-coding 102640569 XR_376077 Gm36603 - - 3 G3|3 predicted gene, 36603 ncRNA 404446 Olfr932-ps1 - - 9|9 A5.1 olfactory receptor 932, pseudogene 1 pseudo 13324 Del(8)62H Del62H - - deletion, Chr 8, Harwell 62 other 102640932 Mm.334436 Gm36879 - - 8|8 predicted gene, 36879 ncRNA 54525 Mm.182654 NM_018801 ENSMUSG00000024743 Syt7 AI851541|B230112P13Rik - 19|19 A synaptotagmin VII protein-coding 74687 Mm.66996 NR_040504 ENSMUSG00000086969 4930443O20Rik - - 2|2 D RIKEN cDNA 4930443O20 gene ncRNA 105245868 NR_154592 Gm48909 - - 14 C1|14 predicted gene, 48909 pseudo 102640039 Mm.442037 XR_380897 Gm36208 - - 10 D2|10 predicted gene, 36208 ncRNA 100418440 Gm12656 - - 4|4 C5 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1 pseudogene pseudo 100008567 Mm.440261 Gm14964 - - - predicted gene 14964 unknown 105244256 XR_866613 Gm39898 - - 2 E2|2 predicted gene, 39898 ncRNA 100124471 NR_030276 ENSMUSG00000078032 Mir291b Mirn291b|mir-291b|mmu-mir-291b - 7 A1|7 microRNA 291b ncRNA 631243 Gm12101 - - 11|11 A4 predicted gene 12101 pseudo 102634150 XR_387949 Gm31805 Gm45759 - 8 D1|8 predicted gene, 31805 ncRNA 215615 Mm.291048 NM_145417 ENSMUSG00000041926 Rnpep - - 1|1 E4 arginyl aminopeptidase (aminopeptidase B) protein-coding 66174 Mm.7070 NM_025399 ENSMUSG00000002804 Nudt14 1110030M18Rik|UGPPase - 12|12 F1 nudix (nucleoside diphosphate linked moiety X)-type motif 14 protein-coding 101055933 Gm29746 - - 12|12 predicted gene, 29746 protein-coding 432681 Rpl31-ps1 EG432681|Gm5437 - 12|12 D3 ribosomal protein L31, pseudogene 1 pseudo 72223 1700015P03Rik - - 16|16 RIKEN cDNA 1700015P03 gene protein-coding 102638824 XR_381278 Gm35298 - - 12 A1.1|12 predicted gene, 35298 ncRNA 100494 Mm.24521 NM_133349 ENSMUSG00000053581 Zfand2a AA407930|AU016206|Airap - 5|5 G2 zinc finger, AN1-type domain 2A protein-coding 621363 Gm6218 EG621363 - 12|12 C1 ribosomal protein L13 pseudogene pseudo 100502987 Mm.124957 NR_040628 Gm17066 - - 14 E2.3|14 55.37 cM predicted gene 17066 ncRNA 77418 C030015A19Rik - - 6|6 RIKEN cDNA C030015A19 gene protein-coding 668225 Mm.385011 NM_001214911 ENSMUSG00000095440 Fignl2 EG668225 - 15|15 F1 fidgetin-like 2 protein-coding 105243155 Mm.112403 XR_870295 Gm26795 - - 8 A2|8 predicted gene, 26795 ncRNA 102639821 Mm.440516 XR_386642 Gm36043 - - 19 C1|19 predicted gene, 36043 ncRNA 73012 2900072D07Rik - - 4|4 RIKEN cDNA 2900072D07 gene protein-coding 619371 Mm.316894 NM_001030317 Stxbp3-ps Munc18c(L)|Stxbp3-1|Stxbp3b - 19|19 A syntaxin-binding protein 3, pseudogene pseudo 105246326 XR_877005 Gm41627 - - 17 E3|17 predicted gene, 41627 ncRNA 108076 Ltrm5 Ltrm-5 - - LTR mink cell focus forming murine leukemia viral locus 5 protein-coding 16343 Eif3s6-ps2 Int6-ps2 - 18|18 E4 eukaryotic translation initiation factor 3, subunit 6, pseudogene 2 pseudo 15229 Mm.347441 NM_008242 ENSMUSG00000078302 Foxd1 AI385632|BF-2|FREAC4|Hfh10|Hfhbf2 - 13 D1|13 51.96 cM forkhead box D1 protein-coding 111683 Mpmv1 Mpmv-1 - - modified polytropic murine leukemia virus 1 other 102640497 Gm36542 - - 17|17 predicted gene, 36542 ncRNA 100418133 Gm19024 - - 3|3 E1 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 170772 Mm.210787 NM_133236 ENSMUSG00000029638 Glcci1 2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1 - 6|6 A1 glucocorticoid induced transcript 1 protein-coding 102637897 XR_384198 Gm34593 - - 15 D3|15 predicted gene, 34593 ncRNA 105843 AI448362 - - - expressed sequence AI448362 unknown 98215 Mm.239534 AA536859 - - - expressed sequence AA536859 unknown 258572 Mm.377573 NM_146579 ENSMUSG00000042796 Olfr1032 MOR199-1 - 2|2 D olfactory receptor 1032 protein-coding 100042640 Gm3943 - - X|X D predicted gene 3943 pseudo 442852 D6Tem2 - - 6 61.67 cM DNA segment, Chr 6, Temple 2 unknown 101056231 Gm29803 - - 6 G1|6 fucose mutarotase-like pseudo 108168673 XR_001782927 LOC108168673 - - - uncharacterized LOC108168673 ncRNA 80907 Mm.157882 NM_030717 ENSMUSG00000032370 Lactb LACT-1|Lact1|Mrpl56 - 9|9 C lactamase, beta protein-coding 666432 Gm8102 EG666432 - 11|11 A4 stress-induced phosphoprotein 1 pseudogene pseudo 102640002 XR_382176 Gm36181 - - 13 A3.2|13 predicted gene, 36181 ncRNA 790911 Mm.457257 NR_003282 ENSMUSG00000085747 Slc13a2os Gm11194 - 11 B5|11 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand ncRNA 104334 Pira8 - - - paired-Ig-like receptor A8 protein-coding 53710 D14Mc1 D14McC1 - - DNA segment, Chr 14, McClelland 1 unknown 102636932 Gm28249 - - Y|Y predicted gene 28249 ncRNA 76632 1700093P08Rik - - - RIKEN cDNA 1700093P08 gene protein-coding 217734 Mm.388249 NM_153415 ENSMUSG00000034126 Pomt2 - - 12|12 D2 protein-O-mannosyltransferase 2 protein-coding 102636138 XR_878346 Gm33292 - - 1 C5|1 predicted gene, 33292 ncRNA 545921 Obox3-ps6 EG545921|Gm5889 - 7 A2|7 oocyte specific homeobox 3, pseudogene 6 pseudo 78328 Mm.45861 XR_386843 1810035K13Rik - - 19|19 D2 RIKEN cDNA 1810035K13 gene ncRNA 102465772 NR_106131 ENSMUSG00000099153 Mir7671 Gm27802|mmu-mir-7671 - 11|11 B1.3 microRNA 7671 ncRNA 68316 Mm.379156 NM_026673 ENSMUSG00000079508 Apoo 0610008C08Rik|1110019O03Rik - X|X C3 apolipoprotein O protein-coding 62899 D10Mit223 - - 10 35.23 cM DNA segment, Chr 10, Massachusetts Institute of Technology 223 unknown 100124353 Traj36 Gm17610 - 14|14 C2 T cell receptor alpha joining 36 pseudo 116611 D7Tem13 - - - DNA segment, Chr 7, Tempel 13 unknown 74463 Mm.333647 NM_028954 ENSMUSG00000011263 Exoc3l2 4933417E01Rik|AU042655|Gm19857 - 7|7 A3 exocyst complex component 3-like 2 protein-coding 27262 Smok1 Smok|Tcr-1|Tcr1 - - sperm motility kinase 1 protein-coding 62399 D18Mit117 - - 18 11.24 cM DNA segment, Chr 18, Massachusetts Institute of Technology 117 unknown 105243897 XR_865318 Gm39618 - - 1 B|1 predicted gene, 39618 ncRNA 99470 Mm.264849 NM_133853 ENSMUSG00000052539 Magi3 4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634 - 3 F2.2|3 45.52 cM membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 22317 Mm.32321 NM_009496 ENSMUSG00000030337 Vamp1 Syb-1|Syb1|VAMP-1|lew - 6 F2|6 59.32 cM vesicle-associated membrane protein 1 protein-coding 27541 D15N4 67F9T7 - - DNA segment, Chr 15, NIH 4 unknown 105244472 XR_867366 Gm40074 - - 3 E3|3 predicted gene, 40074 ncRNA 666353 Gm8058 EG666353 - 9|9 E1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 16634 Mm.425338 NM_010648 ENSMUSG00000067591 Klra3 5E6|Ly49c|NK-2.1|Nk-2|Nk2|Nk2.1 - 6 F3|6 63.44 cM killer cell lectin-like receptor, subfamily A, member 3 protein-coding 111546 Pmv30 Pmv-30 - - polytropic murine leukemia virus 30 other 104095 Ir8 Ir-8 - - immune response 8 unknown 53659 D17J2 D0J6 - - DNA segment, Chr 17, Jackson Laboratory 2 unknown 672025 LOC672025 - - 8|8 uncharacterized LOC672025 protein-coding 62869 D11Mit284 - - 11 54.34 cM DNA segment, Chr 11, Massachusetts Institute of Technology 284 unknown 102632341 XR_378307 Gm30440 - - 7 D3|7 predicted gene, 30440 ncRNA 19640 Rb(X.12)7H Rb7H - - Robertsonian translocation, Chr X and 12, Harwell 7 other 102638634 Gm35151 - - 2|2 predicted gene, 35151 ncRNA 20480 Mm.3990 NM_009191 ENSMUSG00000001829 Clpb AL118244|Skd3 - 7|7 E2 ClpB caseinolytic peptidase B protein-coding 102639078 Mm.398938 XR_001783452 Gm35478 - - 2 F1|2 predicted gene, 35478 ncRNA 100861677 Gm21127 - - Y|Y predicted gene, 21127 protein-coding 105244797 XR_868592 Gm40345 - - 5 G2|5 predicted gene, 40345 ncRNA 27796 D2Dcr9 - - - DNA segment, Chr 2, Derry C. Roopenian 9 unknown 102639340 XR_377340 Gm35674 - - 6 A1|6 predicted gene, 35674 ncRNA 116906 Char4 - - 3 56.54 cM P. chabaudi malaria resistance QTL 4 unknown 232157 Mm.29500 NM_145571 ENSMUSG00000043131 Mob1a 4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b - 6|6 C3 MOB kinase activator 1A protein-coding 18203 Mm.380410 NM_010946 ENSMUSG00000022681 Ntan1 PNAA|PNAD - 16 A1|16 9.64 cM N-terminal Asn amidase protein-coding 53160 187c10-Sp6 - - - DNA segment, 187c10-Sp6 unknown 18710 Mm.253819 NM_181585 ENSMUSG00000028698 Pik3r3 AA414954|p55|p55pik - 4|4 D1 phosphoinositide-3-kinase regulatory subunit 3 protein-coding 62553 D11Mit213 - - 11 58.9 cM DNA segment, Chr 11, Massachusetts Institute of Technology 213 unknown 102631713 Gm29983 - - 16|16 predicted gene, 29983 protein-coding 60411 Mm.281498 NM_021790 ENSMUSG00000021714 Cenpk B130045K24Rik|BB232189|C530004N04Rik|Cenp-K|Solt|Solzt - 13|13 D1 centromere protein K protein-coding 100861531 NR_046233 Rn45s - - - 45S pre-ribosomal RNA rRNA 211480 Mm.68170 NM_145963 ENSMUSG00000058743 Kcnj14 A930026G01Rik|IRK4|Kir2.4 - 7|7 B3 potassium inwardly-rectifying channel, subfamily J, member 14 protein-coding 105243551 Mm.243716 XR_880278 1600015H23Rik - - 11|11 E1 RIKEN cDNA 1600015H23 gene ncRNA 108168057 Gm46396 - - 13 C3|13 NHP2-like protein 1 pseudogene pseudo 627888 Gm6806 EG627888 - X|X A7.1 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene pseudo 665495 Vmn2r-ps40 100041977|EG665495|Gm3603 - 7|7 A1 vomeronasal 2, receptor, pseudogene 40 pseudo 77510 9330179A15Rik - - - RIKEN cDNA 9330179A15 gene protein-coding 102632615 XR_386399 Gm30642 - - 18 E3|18 predicted gene, 30642 ncRNA 102632926 XR_384249 Gm30877 - - 15 E1|15 predicted gene, 30877 ncRNA 102638908 XR_387345 Gm35355 - - 1 E2.3|1 predicted gene, 35355 ncRNA 667604 Trav8d-2 EG667604|Gm8721 - 14|14 C2 T cell receptor alpha variable 8D-2 other 102638566 Gm35100 - - 18|18 predicted gene, 35100 ncRNA 102467651 n-TKctt26 n-Tk26 - 1 E4|1 nuclear encoded tRNA lysine 26 (anticodon TTT) tRNA 626439 Gm14639 EG626439 - X|X A5 transformer 2 beta homolog pseudogene pseudo 108168007 XR_001780624 Gm46356 - - 12 C3|12 predicted gene, 46356 ncRNA 102642210 XR_875141 Gm38600 - - 15 B3.1|15 predicted gene, 38600 ncRNA 102634465 Gm32042 - - 19|19 predicted gene, 32042 ncRNA 100503095 Mm.484685 Gm19552 - - 1|1 42.11 cM predicted gene, 19552 unknown 52647 Mm.21270 D15Ertd509e - - 15 29.3 cM DNA segment, Chr 15, ERATO Doi 509, expressed unknown 52819 Mm.276298 D7Bwg0826e - - 7 B2|7 DNA segment, Chr 7, Brigham & Women's Genetics 0826 expressed unknown 116976 Elmaz2 - - 5 77.27 cM elevated maze behavior 2 unknown 72735 Mm.268598 NR_015469 Eldr 2810442I21Rik|4930500E12Rik|Fabl - 11|11 A2 Egfr long non-coding downstream RNA ncRNA 791330 Mm.44236 A230060F14Rik - - - RIKEN cDNA A230060F14 gene protein-coding 102636928 Gm33866 - - 3 F2.2|3 predicted gene, 33866 pseudo 545541 Gm5849 EG545541 - 3|3 F1 predicted gene 5849 protein-coding 100040462 Mm.463437 NM_001170853 ENSMUSG00000090272 Mndal Gm2785|Ifi212 - 1 H3|1 myeloid nuclear differentiation antigen like protein-coding 15396 Mm.26954 NM_010450 ENSMUSG00000038210 Hoxa11 Hox-1.9|Hoxa-11 - 6 B3|6 25.4 cM homeobox A11 protein-coding 105245731 Gm41134 - - 14|14 predicted gene, 41134 ncRNA 16753 l5H1 l(5)-1H - - lethal, Chr 5, Harwell 1 unknown 13869 Mm.442420 NM_010154 ENSMUSG00000062209 Erbb4 Her4|c-erbB-4 - 1 C3|1 33.8 cM erb-b2 receptor tyrosine kinase 4 protein-coding 18227 Mm.3507 NM_013613 ENSMUSG00000026826 Nr4a2 HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR - 2 C1.1|2 31.66 cM nuclear receptor subfamily 4, group A, member 2 protein-coding 622263 Gm6303 EG622263 - 8|8 A4 peptidyl prolyl isomerase H pseudogene pseudo 101055627 Gm13866 - - 2 E2|2 54.13 cM predicted gene 13866 pseudo 72632 Mm.443483 NM_001206849 ENSMUSG00000094500 Smim18 2700090O03Rik|AI835723 - 8 A3|8 small integral membrane protein 18 protein-coding 110228 Igh-Lev - - - immunoglobulin heavy chain Lev other 244310 Mm.404697 NM_172910 ENSMUSG00000047495 Dlgap2 6430596N04Rik|Dap-2|Dap2|Sapap2 - 8|8 A1.1 DLG associated protein 2 protein-coding 13310 Del(4)17H Del17H - - deletion, Chr 4, Harwell 17 other 108168281 XR_001781889 LOC108168281 - - 16 A1 uncharacterized LOC108168281 ncRNA 105246665 NR_151531 ENSMUSG00000101172 Gm28535 - - 1 D|1 predicted gene 28535 ncRNA 102640683 XR_001782859 Gm36695 - - X C3|X predicted gene, 36695 ncRNA 97211 C76992 - - - expressed sequence C76992 unknown 72307 Mm.36907 NM_001033164 ENSMUSG00000071632 2510002D24Rik 2410043I01Rik|AA163535|AA409624|DXMgi27 - 16|16 A3 RIKEN cDNA 2510002D24 gene protein-coding 16156 Mm.35814 NM_008350 ENSMUSG00000004371 Il11 IL-11 - 7 A1|7 2.76 cM interleukin 11 protein-coding 170779 Mm.111026 NM_130904 ENSMUSG00000031495 Cd209d SIGN-R3|SIGNR3|mSIGNR3 - 8|8 A1.1 CD209d antigen protein-coding 111456 Rnr16 - - - ribosomal RNA, Chr 16 cluster other 111368 NM_001278258 ENSMUSG00000098754 Prn Gm28045|Gm44637|Prnp-Prnd - 2 F2|2 prion protein readthrough transcript protein-coding 606531 Gm6062 EG606531|Ppia-psx_466.1 - X|X A7.3 peptidylprolyl isomerase A pseudogene x_466.1 pseudo 57781 Mm.416152 NM_021325 ENSMUSG00000022667 Cd200r1 CD200R|Mox2r|OX2R - 16|16 B4 CD200 receptor 1 protein-coding 623954 Mm.478418 NM_001039224 Gm10493 EG623954 - 17 E5|17 predicted gene 10493 unknown 108169093 XM_017321253 Gm43828 - - 5 A3|5 predicted gene 43828 protein-coding 100502767 Mm.274277 5230400M03Rik - - 2|2 C1.1 RIKEN cDNA 5230400M03 gene unknown 77037 Mm.22455 NM_029844 ENSMUSG00000039956 Mrap 1110025G12Rik|C21ORF61|Falp|ORF61 - 16|16 C3.3 melanocortin 2 receptor accessory protein protein-coding 13114 Mm.378905 NM_007820 ENSMUSG00000038656 Cyp3a16 - - 5 G2|5 85.17 cM cytochrome P450, family 3, subfamily a, polypeptide 16 protein-coding 17146 Mm.347462 NM_031171 ENSMUSG00000073069 Mageb2 Mage-b2|Mage-rs2|Smage2 - X C2|X 40.35 cM melanoma antigen, family B, 2 protein-coding 102637702 XR_389054 Gm16342 - - 11 E1|11 66.48 cM predicted gene 16342 ncRNA 207138 Bbaa17 Bb17 - 9 55.07 cM B.burgdorferi-associated arthritis 17 unknown 104135 H34 H-34 - - histocompatibility 34 protein-coding 61799 D2Mit408 - - 2 73.8 cM DNA segment, Chr 2, Massachusetts Institute of Technology 408 unknown 68483 XR_373311 1110002O04Rik - - 1|1 B RIKEN cDNA 1110002O04 gene ncRNA 100418012 Gm18947 - - 14|14 C3 family with sequence similarity 54, member A pseudogene pseudo 224098 Mm.125439 NM_001357870 Gm536 Gm1777 - 16|16 B2 predicted gene 536 protein-coding 100042133 Gm3687 - - 5 C3.1|5 predicted gene 3687 pseudo 18098 Nlf2 - - - neonatal lethal factor 2 unknown 100417476 Gm15789 - - 1|1 C3 heat shock protein 1 (chaperonin) pseudogene pseudo 258879 Mm.223292 NM_146879 ENSMUSG00000050818 Olfr330 MOR275-1 - 11|11 B1.3 olfactory receptor 330 protein-coding 76130 Mm.274318 NM_152822 ENSMUSG00000057421 Las1l 1810030A06Rik|5830482G23Rik - X|X C3 LAS1-like (S. cerevisiae) protein-coding 15558 Mm.214351 NM_172812 ENSMUSG00000034997 Htr2a 5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2 - 14 D3|14 39.37 cM 5-hydroxytryptamine (serotonin) receptor 2A protein-coding 17833 Mm.334332 NM_010844 ENSMUSG00000037974 Muc5ac 2210005L13Rik|MGM - 7 F5|7 87.23 cM mucin 5, subtypes A and C, tracheobronchial/gastric protein-coding 62811 D14Mit192 - - 14 37.33 cM DNA segment, Chr 14, Massachusetts Institute of Technology 192 unknown 55987 Mm.471654 NM_018867 ENSMUSG00000030862 Cpxm2 4632435C11Rik|CPX-2|Cpx2 - 7|7 F3 carboxypeptidase X 2 (M14 family) protein-coding 15900 Mm.334861 NM_008320 ENSMUSG00000041515 Irf8 AI893568|ICSBP|IRF-8|Icsbp1|Myls - 8 E1|8 70.05 cM interferon regulatory factor 8 protein-coding 414098 Mm.319499 C230096K16Rik - - - RIKEN cDNA C230096K16 gene protein-coding 320214 Mm.294342 NM_177104 ENSMUSG00000022805 Maats1 4932425I24Rik|Aat1|CFAP91|Spata26 - 16|16 B3 MYCBP-associated, testis expressed 1 protein-coding 257834 Olfr1139-ps1 EG257834|GA_x5J8B7W3Y5M-1033291-1033773|Gm5026 - 2 D|2 olfactory receptor 1139, pseudogene 1 pseudo 238440 Mm.342177 LOC238440 - - 12|12 F2 Ig heavy chain V region other 20388 Mm.46033 NM_147779 ENSMUSG00000056370 Sftpb AI562151|SF-B|SP-B|Sftp-3|Sftp3 - 6 C1|6 32.27 cM surfactant associated protein B protein-coding 100034959 Alcrsp6 - - 15 1.8 cM alcohol response 6 unknown 328919 Mm.118671 NR_152129 Gm38410 9530053H22 - 18|18 A2 predicted gene, 38410 ncRNA 243816 Mm.248662 NM_001163014 ENSMUSG00000078810 Gp6 9830166G18Rik|Gm469|Gpvi - 7|7 A1 glycoprotein 6 (platelet) protein-coding 227612 Mm.119747 NM_146115 ENSMUSG00000059555 Tor4a A830007P12Rik - 2|2 A3 torsin family 4, member A protein-coding 105245300 XR_872080 Gm40775 - - 10 D2|10 predicted gene, 40775 ncRNA 494504 Mm.391102 NM_133237 ENSMUSG00000071847 Apcdd1 AB023957|AU041258|Drapc1|EIG180 - 18|18 E1 adenomatosis polyposis coli down-regulated 1 protein-coding 493027 Dpml - - - dopamine loss unknown 53951 Mm.220253 NM_181649 ENSMUSG00000050668 Gpatch11 2310002B06Rik|C80922|Ccdc75|L26697 - 17|17 E3 G patch domain containing 11 protein-coding 75398 Mm.36511 NM_029271 ENSMUSG00000015672 Mrpl32 0610033O15Rik - 13|13 A1 mitochondrial ribosomal protein L32 protein-coding 94249 Mm.217171 NM_053195 ENSMUSG00000063873 Slc24a3 NCKX3 - 2|2 G1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 protein-coding 100113451 Brml10 - - - bone response to mechanical loading 10 unknown 230316 Mm.251188 NM_172694 ENSMUSG00000039270 Megf9 4933405H16Rik|9630025C07|Egfl5|mKIAA0818 - 4|4 C2 multiple EGF-like-domains 9 protein-coding 105242828 XR_869628 Gm38930 - - 6 G3|6 predicted gene, 38930 ncRNA 105244208 XM_011239877 LOC105244208 - - 2 C3 40S ribosomal protein S6 protein-coding 102633103 XR_385072 Gm31012 - - 16 C4|16 predicted gene, 31012 ncRNA 66118 Mm.235562 NM_025364 ENSMUSG00000078427 Sarnp 1110005A23Rik|Cip29 - 10|10 D3 SAP domain containing ribonucleoprotein protein-coding 634939 Gm13384 - - 2|2 A1 TRAF-interacting protein pseudogene pseudo 112126 Szs5 - - 1 41.24 cM seizure susceptibility 5 unknown 64450 Mm.167625 NM_145066 ENSMUSG00000048216 Gpr85 2900026B03Rik - 6|6 A1 G protein-coupled receptor 85 protein-coding 723858 NR_029880 ENSMUSG00000065498 Mir379 Mirn379|mir-379|mmu-mir-379 - 12 F1|12 microRNA 379 ncRNA 102636697 XR_001778309 Gm33697 - - 7 F4|7 predicted gene, 33697 pseudo 97913 T25641 - - - expressed sequence T25641 unknown 225644 Mm.192285 NM_145493 ENSMUSG00000024519 Cplx4 A930004D23Rik|CPXIV|Gm957 - 18|18 E1 complexin 4 protein-coding 72837 2810487C13Rik - - 8|8 RIKEN cDNA 2810487C13 gene protein-coding 100503336 Gm19641 - - 1|1 10.98 cM predicted gene, 19641 pseudo 665800 Gm7791 EG665800 - 10|10 A4 RAN guanine nucleotide release factor pseudogene pseudo 102640025 XR_379180 Gm36198 - - 9 A3|9 predicted gene, 36198 ncRNA 102636474 XR_875643 Gm33531 - - 15 F1|15 predicted gene, 33531 ncRNA 622673 Gm6341 EG622673 - 7|7 E2 ribosomal protein L27 pseudogene pseudo 104122 Lpn1 LN-1|Lpn-1 - - NZ lupus nephritis 1 protein-coding 100416845 Gm15780 - - 6|6 G3 SEH1-like (S. cerevisiae pseudogene pseudo 110972 Anxa7-ps1 Anx7-ps1 - - annexin A7, pseudogene 1 pseudo 52461 D13Ertd94e - - 13 66.84 cM DNA segment, Chr 13, ERATO Doi 94, expressed unknown 17293 Mm.31472 NM_008589 ENSMUSG00000030543 Mesp2 bHLHc6 - 7 D2|7 45.18 cM mesoderm posterior 2 protein-coding 13382 Mm.3131 NM_007861 ENSMUSG00000020664 Dld - - 12 A2|12 13.43 cM dihydrolipoamide dehydrogenase protein-coding 102638342 XR_387254 Gm34930 - - 1 D|1 predicted gene, 34930 ncRNA 14835 gs - - - glabrous unknown 108407 Xmmv11 Env-11|Xmmv-11 - - xenotropic-MCF leukemia virus 11 other 319276 Mm.130819 A230038B01Rik - - 18|18 RIKEN cDNA A230038B01 gene protein-coding 108015 Mm.32694 NM_148944 ENSMUSG00000035200 Chrnb4 Acrb-4|Acrb4 - 9|9 B cholinergic receptor, nicotinic, beta polypeptide 4 protein-coding 56191 Mm.3597 NM_019548 ENSMUSG00000025272 Tro AA409408|Maged3|Maged3l|Tnn|Trol|magphinin - X|X F3 trophinin protein-coding 102639967 XR_375351 Gm36156 - - 2 H3|2 predicted gene, 36156 ncRNA 109804 H15 H-15 - - histocompatibility 15 protein-coding 20866 Mm.645 NM_009287 ENSMUSG00000030987 Stim1 SIM - 7 E2-E3|7 54.71 cM stromal interaction molecule 1 protein-coding 77283 Mm.440652 9430022A07Rik - - 10|10 D2 RIKEN cDNA 9430022A07 gene protein-coding 209601 Mm.331454 NM_175176 ENSMUSG00000078161 Erich3 1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133 - 3|3 H4 glutamate rich 3 protein-coding 58805 Mm.34213 NM_021455 ENSMUSG00000005373 Mlxipl ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14 - 5|5 G2 MLX interacting protein-like protein-coding 100418259 Gm14117 - - 2|2 G1 ATP synthase mitochondrial F1 complex assembly factor 1 pseudogene pseudo 70625 Mm.235885 NM_027485 ENSMUSG00000045248 Med26 5730493L18Rik|AI414941|AW495270|Crsp7 - 8|8 B3.3 mediator complex subunit 26 protein-coding 62855 D12Mit190 - - 12 26.06 cM DNA segment, Chr 12, Massachusetts Institute of Technology 190 unknown 97600 C80283 - - - expressed sequence C80283 unknown 68705 Mm.20415 NM_026816 ENSMUSG00000067995 Gtf2f2 1110031C13Rik|AI326315 - 14|14 D3 general transcription factor IIF, polypeptide 2 protein-coding 105246254 XR_876734 Gm41562 - - 17 A3.3|17 predicted gene, 41562 ncRNA 18576 Mm.430730 NM_011055 ENSMUSG00000030671 Pde3b 9830102A01Rik|AI847709 - 7 F1|7 59.46 cM phosphodiesterase 3B, cGMP-inhibited protein-coding 102466210 NR_105920 ENSMUSG00000099267 Mir6955 Gm27769|mmu-mir-6955 - 15|15 E1 microRNA 6955 ncRNA 100035519 Pstc6 - - - periosteal circumference 6 unknown 328561 Mm.379486 NM_177820 ENSMUSG00000050014 Apol10b 9130218O11Rik - 15|15 E1 apolipoprotein L 10B protein-coding 240041 Mm.328828 NM_177358 ENSMUSG00000059142 Zfp945 A630033E08Rik|C730040L01Rik - 17|17 A3.3 zinc finger protein 945 protein-coding 73050 Mm.458460 2900056L01Rik AI428930 - - RIKEN cDNA 2900056L01 gene protein-coding 108169005 XR_001784545 Gm46889 - - 4 C7|4 predicted gene, 46889 ncRNA 14048 Mm.250185 NM_010164 ENSMUSG00000025932 Eya1 bor - 1 A3|1 4.31 cM EYA transcriptional coactivator and phosphatase 1 protein-coding 102639795 Mm.385798 XR_383418 Gm36024 - - 14 C1|14 predicted gene, 36024 ncRNA 76071 Mm.85280 NM_178394 ENSMUSG00000063646 Jakmip1 5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1 - 5|5 B3 janus kinase and microtubule interacting protein 1 protein-coding 62262 D18Mit90 - - 18 29.27 cM DNA segment, Chr 18, Massachusetts Institute of Technology 90 unknown 100042846 Gm12057 Gm4063 - 11 A3.2|11 methionine aminopeptidase 2 pseudogene pseudo 105247219 XR_881589 Gm13070 - - 4 E2|4 80.47 cM predicted gene 13070 ncRNA 100316870 Mm.379794 NR_033146 Gm17821 - - 12|12 C2 DDB1 and CUL4 associated factor 5 pseudogene pseudo 751536 NR_030492 ENSMUSG00000076142 Mir711 Mirn711|mir-711|mmu-mir-711 - 9 F2|9 microRNA 711 ncRNA 319970 Mm.186434 NR_040765 ENSMUSG00000097623 B230323A14Rik - - 9|9 D RIKEN cDNA B230323A14 gene ncRNA 24131 Mm.29733 NM_011918 ENSMUSG00000021798 Ldb3 AW742271|PDLIM6|ZASP - 14|14 B LIM domain binding 3 protein-coding 666652 Gm13148 - - 4|4 E1 predicted gene 13148 pseudo 666678 XR_874569 Gm8232 EG666678 - 14|14 C1 predicted gene 8232 protein-coding 73122 Mm.246069 NM_001013025 ENSMUSG00000070939 Tgfbrap1 3110018K12Rik|AU024090|AU042859|AW742551|Trap1 - 1|1 B transforming growth factor, beta receptor associated protein 1 protein-coding 237928 Mm.133075 NM_153104 ENSMUSG00000050860 Phospho1 D11Moh36|Phospo1 - 11 D|11 59.01 cM phosphatase, orphan 1 protein-coding 102641467 XM_011250970 Gm20684 - - 7 C|7 35.36 cM predicted gene 20684 protein-coding 271639 Mm.66952 NM_173029 ENSMUSG00000026567 Adcy10 4930431D04Rik|4931412F17|Sacy|sAC - 1|1 H2.2-H2.3 adenylate cyclase 10 protein-coding 102632908 Gm30861 - - Y|Y predicted gene, 30861 pseudo 102639023 XR_381711 Gm35440 - - 12 C3|12 predicted gene, 35440 ncRNA 108278 Eif4a-ps10 - - - eukaryotic translation initiation factor 4A, pseudogene 10 pseudo 102639565 Gm35848 - - 5|5 predicted gene, 35848 ncRNA 105245317 Gm40792 - - 10|10 predicted gene, 40792 ncRNA 102640816 Mm.332579 XR_389536 Gm36794 - - 5 F|5 predicted gene, 36794 ncRNA 11787 Mm.5159 NM_009686 ENSMUSG00000029207 Apbb2 2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra - 5|5 C3.1 amyloid beta (A4) precursor protein-binding, family B, member 2 protein-coding 105245250 Gm40729 - - 10|10 predicted gene, 40729 ncRNA 102634367 Gm29043 - - Y|Y predicted gene 29043 ncRNA 102635514 LOC102635514 - - 12 A2 serine palmitoyltransferase small subunit A pseudogene pseudo 100862414 LOC100862414 - - - aurora kinase C-like pseudo 66591 Mm.272024 NM_025649 ENSMUSG00000034509 Mad2l1bp 0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110 - 17|17 C MAD2L1 binding protein protein-coding 72389 2310050P20Rik - - 1|1 RIKEN cDNA 2310050P20 gene protein-coding 102640995 XR_382839 Gm36921 - - 13 D1|13 predicted gene, 36921 ncRNA 107521 Bis2 - - - beta-carboline-induced seizures 2 unknown 433899 Mm.332422 NM_001018019 ENSMUSG00000068082 Grxcr1 Tg(Eno2-Gabrb3)0370Brll|pi|tde - 5 C3.1|5 36.59 cM glutaredoxin, cysteine rich 1 protein-coding 19152 Mm.2364 NM_011178 ENSMUSG00000057729 Prtn3 PR3|mPR3 - 10 C1|10 39.72 cM proteinase 3 protein-coding 382457 Gm5178 EG382457 - 10|10 A2 small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha pseudogene pseudo 110431 Evi14 - - - ecotropic viral integration site 14 protein-coding 208647 Mm.169929 NM_178661 ENSMUSG00000038648 Creb3l2 BBF2H7|C530025K05Rik|SCIRR69 - 6|6 B1 cAMP responsive element binding protein 3-like 2 protein-coding 102635337 XR_382892 Gm32703 - - 13 D2.1|13 predicted gene, 32703 ncRNA 68728 Mm.293605 NM_178111 ENSMUSG00000038375 Trp53inp2 1110029F20Rik|Tp53inp2 - 2|2 H1 transformation related protein 53 inducible nuclear protein 2 protein-coding 114565 Mm.474489 NM_175428 ENSMUSG00000046962 Zbtb21 5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227 - 16|16 C4 zinc finger and BTB domain containing 21 protein-coding 68510 Mm.292942 NM_026748 ENSMUSG00000029547 Ints1 1110015K06Rik - 5|5 G2 integrator complex subunit 1 protein-coding 102633687 Gm31451 - - 13|13 predicted gene, 31451 pseudo 100101489 Trav5d-3 Gm17342 - 14|14 C2 T cell receptor alpha variable 5D-3 pseudo 621605 Gbp2-ps EG621605|Gm6243 - 3|3 H1 guanylate binding protein 2, pseudogene pseudo 100038807 Ignpq1 - - - IgA nephropathy QTL 1 unknown 493113 Lrdg2 - - 4 74.75 cM light induced retinal degeneration 2 unknown 100126082 Mtbcq1 Bwnd2wk3 - - multiple trait body composition QTL 1 unknown 236082 Mm.305345 NM_001033326 ENSMUSG00000063897 Dhrsx C80877|D4Ertd296e|Dhrsxy|Pscad - 4 E|4 dehydrogenase/reductase (SDR family) X chromosome protein-coding 78023 Mm.243853 NR_040537 4930529L06Rik - - 16 C3.3|16 RIKEN cDNA 4930529L06 gene ncRNA 385820 Gm5405 EG385820 - 16|16 B3 SET domain containing 6 pseudogene pseudo 105245621 XR_873902 Gm41051 - - 13 D2.1|13 predicted gene, 41051 ncRNA 171229 Mm.377187 NM_134195 Vmn1r227 V1re6 - 17|17 A3.2 vomeronasal 1 receptor 227 protein-coding 57743 Mm.21435 NM_021305 ENSMUSG00000025816 Sec61a2 - - 2|2 A1 Sec61, alpha subunit 2 (S. cerevisiae) protein-coding 102633800 LOC102633800 - - 7 B1 60S ribosomal protein L23a pseudogene pseudo 71424 5430430B14Rik - - 8|8 RIKEN cDNA 5430430B14 gene protein-coding 21245 T(7;11)40Ad T40Ad - - reciprocal translocation, Chr 7 and 11, Adler 40 other 69113 Mm.272498 NM_026944 ENSMUSG00000040174 Alkbh3 1700108H04Rik|1810020C19Rik|Abh3|mABH3 - 2|2 E1 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase protein-coding 21160 T(3;11)16Ad T16Ad - - reciprocal translocation, Chr 3 and 11, Adler 16 other 219060 Mm.246577 NM_177626 B230359F08Rik TRAV13-5 - 14|14 C2 RIKEN cDNA B230359F08 gene other 105244676 XR_868093 Gm12923 - - 4 D2.2|4 57.38 cM predicted gene 12923 ncRNA 668445 Gm13744 - - 2|2 D mitochondrial ribosomal protein L45 pseudogene pseudo 85173 D13Mit54 - - 13 28.71 cM DNA segment, Chr 13, Massachusetts Institute of Technology 54 unknown 102635321 Mm.121751 NR_153353 ENSMUSG00000106505 Gm32693 - - 3 H1|3 predicted gene, 32693 ncRNA 360054 D17Jcs64 - - - DNA segment, Chr 17, John C. Schimenti 64 unknown 26757 Mm.250414 NM_011993 ENSMUSG00000025478 Dpysl4 AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4 - 7|7 F4 dihydropyrimidinase-like 4 protein-coding 107467 Pcts - - - plasmacytoma susceptibility protein-coding 383563 Mm.40367 NM_001101516 ENSMUSG00000052759 Gpr25 Gm1300 - 1|1 E4 G protein-coupled receptor 25 protein-coding 105242931 XR_882057 Gm39003 - - 7 B3|7 predicted gene, 39003 ncRNA 111481 Loh2 - - - loss of heterozygosity, region 2 other 54642 DXImx44e Sfc23 - - DNA segment, Chr X, Immunex 44, expressed unknown 112282 Sluc13 - - 14 20.88 cM susceptibility to lung cancer 13 unknown 108572 Iap3rc20 - - - intracisternal A-type particle, U3 region, SINE repeat c-20 other 13602 Mm.29027 NM_010097 ENSMUSG00000029309 Sparcl1 Ecm2|Sc1|hevin|mast9 - 5 E5|5 50.55 cM SPARC-like 1 protein-coding 61823 D2Mit342 - - 2 85.27 cM DNA segment, Chr 2, Massachusetts Institute of Technology 342 unknown 195046 Mm.240227 NM_001004142 ENSMUSG00000069830 Nlrp1a CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044 - 11 B4|11 43.21 cM NLR family, pyrin domain containing 1A protein-coding 105244058 Gm39740 - - 1|1 predicted gene, 39740 ncRNA 72325 Mm.276193 NM_028200 ENSMUSG00000001062 Vps9d1 1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1 - 8|8 E1 VPS9 domain containing 1 protein-coding 108167755 XR_001779634 Gm46178 - - 1 H6|1 predicted gene, 46178 ncRNA 666743 Gm8266 EG666743 - 14|14 A1 ribosomal protein L3 pseudogene pseudo 666220 Gm7986 EG666220 - 12|12 C3 predicted gene 7986 pseudo 11937 Mm.35134 NM_007504 ENSMUSG00000030730 Atp2a1 SERCA1 - 7 F3|7 69.04 cM ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 protein-coding 28042 Mm.168854 NM_027652 ENSMUSG00000075703 Selenoi 4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724 - 5 B1|5 16.22 cM selenoprotein I protein-coding 553127 Mm.328602 NM_001018063 ENSMUSG00000067924 Rtl8b Cxx1b|Mart8c - X|X A5 retrotransposon Gag like 8B protein-coding 12977 Mm.795 NM_007778 ENSMUSG00000014599 Csf1 C87615|Csfm|MCSF|op - 3 F2.3|3 46.83 cM colony stimulating factor 1 (macrophage) protein-coding 76382 Mm.23510 NM_029587 ENSMUSG00000029766 1700012A03Rik AI429084 - 6|6 A3.3 RIKEN cDNA 1700012A03 gene protein-coding 56760 Mm.30700 NM_019985 ENSMUSG00000030159 Clec1b 1810061I13Rik|Clec-2|Clec2 - 6|6 F3 C-type lectin domain family 1, member b protein-coding 105247192 Gm42331 - - 4|4 predicted gene, 42331 ncRNA 359925 DXMgc67 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 67 unknown 102636330 Mm.136551 XR_388115 Gm26878 - - 8 E1|8 predicted gene, 26878 ncRNA 665618 Mm.318310 Gm7715 EG665618 - 14|14 B predicted gene 7715 unknown 19228 Mm.3542 NM_011199 ENSMUSG00000032492 Pth1r PPR|Pthr|Pthr1 - 9 F2|9 60.56 cM parathyroid hormone 1 receptor protein-coding 110565 Ltw2 Ltw-2|Lvtw-2 - - liver 20-30 thousand Mol. Wt. protein 2 protein-coding 75321 Mm.402041 NR_045359 ENSMUSG00000084764 Grip1os2 4930564G21Rik - 10|10 D2 glutamate receptor interacting protein 1, opposite strand 2 ncRNA 102638496 Gm35047 - - 5|5 predicted gene, 35047 ncRNA 211007 Mm.794 NM_145377 ENSMUSG00000040365 Trim41 AW552703|BC020156|R75223|RINCK - 11|11 B1.2 tripartite motif-containing 41 protein-coding 71147 Mm.197960 NM_027695 ENSMUSG00000021786 Oxsm 4933425A18Rik|C80494 - 14|14 A2 3-oxoacyl-ACP synthase, mitochondrial protein-coding 13857 Mm.2653 NM_010149 ENSMUSG00000006235 Epor - - 9 A3|9 7.93 cM erythropoietin receptor protein-coding 105246242 Gm41554 - - 17|17 predicted gene, 41554 ncRNA 17931 Mm.422959 NM_027892 ENSMUSG00000019907 Ppp1r12a 1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1 - 10 D1|10 56.33 cM protein phosphatase 1, regulatory (inhibitor) subunit 12A protein-coding 105245104 Gm40599 - - 10|10 predicted gene, 40599 ncRNA 102631967 XR_385058 Gm30163 - - 16 C4|16 predicted gene, 30163 ncRNA 102632063 LOC102632063 - - X A6 40S ribosomal protein SA pseudogene pseudo 117293 Dyscalc4 - - 14 16.8 cM dystrophic cardiac calcinosis 4 unknown 20563 Mm.289739 NM_178804 ENSMUSG00000031558 Slit2 Drad-1|E030015M03Rik|E130320P19Rik|Slil3|b2b1200.1Clo|mKIAA4141|slit-2 - 5|5 B3 slit guidance ligand 2 protein-coding 62421 D13Mit216 - - 13 3.86 cM DNA segment, Chr 13, Massachusetts Institute of Technology 216 unknown 21056 T(11;13)41Ad T41Ad - - reciprocal translocation, Chr 11 and 13, Adler 41 other 104067 Pol1 Pol-1 - - viral polymerase 1 protein-coding 665939 Gm7856 EG665939 - 16|16 C3.3 cell division cycle 20 homolog pseudogene pseudo 61401 D5Mit158 - - 5 55.99 cM DNA segment, Chr 5, Massachusetts Institute of Technology 158 unknown 100504535 LOC100504535 - - X A6 60S ribosomal protein L23 pseudogene pseudo 111967 Mltr7 - - - modified polytropic long terminal repeat containing proviral locus 7 other 111856 Iapls1-73 - - - intracisternal A particle, lymphocyte specific 1-73 other 75246 4930553M12Rik - - 4|4 RIKEN cDNA 4930553M12 gene protein-coding 16376 Is(17;In2)1Gso Is1Gso - - insertion, Chr 17 piece into inverted Chr 2, Generoso 1 other 105244128 XR_866158 Gm39796 - - 2 B|2 predicted gene, 39796 ncRNA 71165 4933421D24Rik - - 8|8 RIKEN cDNA 4933421D24 gene unknown 105244598 Gm40188 - - 3|3 predicted gene, 40188 pseudo 628206 Igkv1-115 EG628206|Gm6854|cz1 - 6 C1|6 immunoglobulin kappa variable 1-115 pseudo 406220 Mm.292992 NM_001003667 ENSMUSG00000067594 Krt77 4732484G22Rik|K1emb|Krt239|mK1b - 15|15 F2 keratin 77 protein-coding 170753 Mm.212908 NM_133218 ENSMUSG00000040209 Zfp704 C030026M03|C030034L19Rik|Gig1|Znf704 - 3|3 A1 zinc finger protein 704 protein-coding 102643046 Gm38652 - - 3|3 predicted gene, 38652 ncRNA 99503 Mm.4902 AA517023 - - - expressed sequence AA517023 unknown 66975 Mm.272541 NM_025879 ENSMUSG00000021711 Trappc13 2410002O22Rik|2610524F24Rik|AI451892|AU017229 - 13|13 D1 trafficking protein particle complex 13 protein-coding 52772 D14Gi1e D14GiK634e - - DNA segment, Chr 14, Genetics Institute, Inc. 1, expressed unknown 227606 Mm.301625 NM_199059 ENSMUSG00000061809 Tbpl2 Gm348|Trf3 - 2|2 A3 TATA box binding protein like 2 protein-coding 545126 Mm.356883 XR_001781588 CN725425 Gm5807 - 15|15 E3 cDNA sequence CN725425 unknown 621017 Gm6197 EG621017 - 3|3 A3 predicted gene 6197 pseudo 85133 DXMit106 - - X 28.21 cM DNA segment, Chr X, Massachusetts Institute of Technology 106 unknown 100042915 Gm4106 - - 16|16 A1 COX11 homolog, cytochrome c oxidase assembly protein pseudogene pseudo 100035171 Agnm3 - - - autoimmune glomerulonephritis in MRL 3 unknown 105763 AA960008 - - - expressed sequence AA960008 protein-coding 619289 Mm.334107 NM_001145660 ENSMUSG00000057173 Rfx8 4933400N17Rik - 1|1 B regulatory factor X 8 protein-coding 108168902 XR_001783991 Gm46826 - - 3 G3|3 predicted gene, 46826 ncRNA 20556 Mm.278689 NM_011408 ENSMUSG00000072620 Slfn2 Shlf2 - 11 C|11 50.3 cM schlafen 2 protein-coding 100038630 Gm10727 - - 3 C|3 predicted gene 10727 unknown 105246945 XR_880499 Gm42139 - - 5 E5|5 predicted gene, 42139 ncRNA 105245168 XR_873106 Gm40658 - - 13 A1|13 predicted gene, 40658 ncRNA 102466221 NR_106052 ENSMUSG00000098646 Mir7084 Gm27978|mmu-mir-7084 - 9|9 A3 microRNA 7084 ncRNA 100415985 Gm15260 - - X|X A1.1 predicted gene 15260 pseudo 258921 Mm.223326 NM_146919 ENSMUSG00000068809 Olfr1188 MOR238-2 - 2|2 D olfactory receptor 1188 protein-coding 258425 Mm.271354 NM_146433 ENSMUSG00000075219 Olfr994 MOR203-4 - 2|2 D olfactory receptor 994 protein-coding 217331 Mm.297706 NM_172569 ENSMUSG00000020770 Unk B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753 - 11|11 E2 unkempt family zinc finger protein-coding 54342 Mm.312945 NM_019425 ENSMUSG00000037722 Gnpnat1 AU017428|AU040593|EMeg32|Gpnat1|Gsnpat - 14|14 C1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 100504444 XM_011245309 Gm21977 - - 14 B|14 predicted gene 21977 protein-coding 106633 Mm.32802 NM_134126 ENSMUSG00000024169 Ift140 AI661311|Tce5|Wdtc2|mKIAA0590 - 17|17 A3.3 intraflagellar transport 140 protein-coding 100415948 Gm17833 - - 5|5 F legumain pseudogene pseudo 105244466 Gm40069 - - 3|3 predicted gene, 40069 ncRNA 102466819 NR_106080 ENSMUSG00000099223 Mir7221 Gm27378|mmu-mir-7221 - 2|2 E1 microRNA 7221 ncRNA 619775 Vmn2r-ps134 EG619775|Gm6099 - 17|17 A3.3 vomeronasal 2, receptor, pseudogene 134 pseudo 20231 Mm.334281 NM_009123 ENSMUSG00000048528 Nkx1-2 Nkx-1.1|Nkx-1.2|Sax1 - 7|7 F3 NK1 homeobox 2 protein-coding 105246615 XR_877977 Gm41882 - - 19 D3|19 predicted gene, 41882 ncRNA 100126463 Trav6-4 Gm13945 - 14|14 C2 T cell receptor alpha variable 6-4 other 100042555 Mm.458019 NM_001099348 ENSMUSG00000073876 Gm13305 - - 4 A5|4 predicted gene 13305 protein-coding 171194 Mm.222754 NM_134176 ENSMUSG00000071893 Vmn1r4 C230065D10Rik|V1rc21 - 6|6 B3 vomeronasal 1 receptor 4 protein-coding 70790 Mm.476840 NM_027553 ENSMUSG00000037487 Ubr5 Edd|Edd1 - 15|15 B3.1 ubiquitin protein ligase E3 component n-recognin 5 protein-coding 17962 Mm.57193 NM_008674 ENSMUSG00000056426 Nat3 - - 8 B3.2|8 33.39 cM N-acetyltransferase 3 protein-coding 101055737 LOC101055737 - - 18 B3 protein UXT pseudogene pseudo 102634979 Gm27150 - - 7|7 predicted gene 27150 pseudo 14264 Mm.287146 NM_021355 ENSMUSG00000041559 Fmod AI131919|AU041740|FM|SLRR2E - 1 E4|1 58.09 cM fibromodulin protein-coding 606519 Gm6054 EG606519|Map1lc3-ps3 - 5|5 G3 microtubule-associated protein 1 light chain 3 pseudogene 3 pseudo 69430 Mm.482910 NR_033553 ENSMUSG00000043773 1700048O20Rik 1700022O21Rik - 9|9 F4 RIKEN cDNA 1700048O20 gene ncRNA 28182 D16Ium27e D16Ium27 - - DNA segment, Chr 16, Indiana University Medical 27, expressed unknown 105243111 Mm.440534 LOC105243111 - - - uncharacterized LOC105243111 ncRNA 108871 Mm.107666 NR_126563 4930447M23Rik - - 2|2 A3 RIKEN cDNA 4930447M23 gene ncRNA 667903 Gm14794 EG667903 - X|X C1 predicted gene 14794 protein-coding 11614 Mm.5180 NM_007430 ENSMUSG00000025056 Nr0b1 AHX|Ahc|Ahch|DAX-1|Dax1 - X C1|X 39.67 cM nuclear receptor subfamily 0, group B, member 1 protein-coding 102637410 XR_378439 Gm34225 Gm44944 - 7 F1|7 predicted gene, 34225 ncRNA 100418341 Gm11743 - - 2|2 G1 CWC22 spliceosome-associated protein homolog pseudogene pseudo 66493 Mm.138749 NM_025595 ENSMUSG00000030335 Mrpl51 2610511M02Rik|CDA09|HSPC241|Mrp64 - 6|6 F2 mitochondrial ribosomal protein L51 protein-coding 320082 Mm.188028 NM_177069 ENSMUSG00000047237 Fbxw21 E330009P21Rik - 9|9 F2 F-box and WD-40 domain protein 21 protein-coding 104323 Emi1 Emi-1 - - proviral insertion Emi 1 protein-coding 14248 Mm.339755 NM_022009 ENSMUSG00000002812 Flii 3632430F08Rik|Fliih - 11 B2|11 37.81 cM flightless I actin binding protein protein-coding 100504608 Mm.486142 NM_001205036 ENSMUSG00000080115 Mettl21b Fam119b|eef1akmt3 - 10 D3 methyltransferase like 21B protein-coding 100416350 Gm18062 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 633947 Mm.461446 NR_033457 ENSMUSG00000097746 Gm6225 EG621440 - 18|18 A1 predicted gene 6225 ncRNA 108168658 XM_017318869 ENSMUSG00000096268 LOC108168658 - - Y A1 Y-linked testis-specific protein 1-like protein-coding 100042083 Gm3654 - - 7 A1|7 predicted gene 3654 pseudo 110120489 LOC110120489 - - - VISTA enhancer mm1586 biological-region 258076 Olfr999-ps1 MOR175-7P - 2|2 D olfactory receptor 999, pseudogene 1 pseudo 237029 Mm.60998 NM_177705 ENSMUSG00000058670 4932411N23Rik - - X|X E3 RIKEN cDNA 4932411N23 gene protein-coding 257878 Olfr752-ps1 MOR220-4P - 17|17 A3.3 olfactory receptor 752, pseudogene 1 pseudo 100039764 Gm2412 - - 12|12 C1 predicted gene 2412 pseudo 100035656 Earheal1 - - - ear healing QTL 1 unknown 102637311 XR_379150 Gm34156 - - 9 A1|9 predicted gene, 34156 ncRNA 117290 Lxl - - - luxate-like unknown 13198 Mm.110220 NM_007837 ENSMUSG00000025408 Ddit3 CHOP-10|CHOP10|chop|gadd153 - 10|10 D3 DNA-damage inducible transcript 3 protein-coding 102633726 Gm21906 - - Y|Y predicted gene, 21906 protein-coding 20845 Mm.293314 NM_011485 ENSMUSG00000031574 Star AV363654|D8Ertd419e|stARD1 - 8 A2|8 14.17 cM steroidogenic acute regulatory protein protein-coding 105246389 Gm26823 - - 18|18 predicted gene, 26823 ncRNA 664862 Mm.415635 NR_003568 Gpr137b-ps 2310041G17Rik - 13|13 A1 G protein-coupled receptor 137B, pseudogene pseudo 668764 Gm9341 EG668764 - 7|7 F3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102636310 XR_375302 Gm33413 - - 2 H3|2 predicted gene, 33413 ncRNA 669778 Rpl36-ps6 Gm9469 - 17 E1.1|17 ribosomal protein L36, pseudogene 6 pseudo 12795 Mm.259022 NM_013807 ENSMUSG00000028680 Plk3 Cnk|Fnk|PLK-3|PRK - 4|4 D1 polo like kinase 3 protein-coding 102638208 Mm.415090 NR_155352 ENSMUSG00000086424 Gm15569 - - 15 E2|15 40.55 cM predicted gene 15569 ncRNA 27282 Erv4 MuERV-L - 6|6 endogenous retroviral sequence 4 (with leucine tRNA primer) other 105245272 XR_872020 ENSMUSG00000092241 Gm20522 - - 17 B1|17 18.59 cM predicted gene 20522 ncRNA 241322 Mm.330182 NM_146253 ENSMUSG00000066798 Zbtb6 A830092L04Rik|ZID|Zfp482 - 2|2 B zinc finger and BTB domain containing 6 protein-coding 100036310 Nsila10 - - - novelty/stress induced locomotor activation 10 unknown 102465580 NR_105926 ENSMUSG00000098527 Mir6961 Gm27367|mmu-mir-6961 - 15|15 F1 microRNA 6961 ncRNA 100862302 Gm21631 - - 3 A1|3 predicted gene, 21631 pseudo 13307 Del(3)64H Del64H - - deletion, Chr 3, Harwell 64 other 100417188 Gm14656 - - X|X A6 crumbs homolog 1 pseudogene pseudo 404418 Olfr719-ps Olfr719|Olfr719-ps1 - 5|5 E5 olfactory receptor 719, pseudogene pseudo 100233208 Mm.327168 NM_001142963 ENSMUSG00000096856 Gm10778 - - 10 C1|10 predicted gene 10778 protein-coding 493046 Cia20 mCia14 - - collagen induced arthritis QTL 20 unknown 22321 Mm.28420 NM_011690 ENSMUSG00000007029 Vars Bat6|D17H6S56E|G7a|Vars2 - 17 B1|17 18.54 cM valyl-tRNA synthetase protein-coding 62332 D6Mit256 - - 6 60.85 cM DNA segment, Chr 6, Massachusetts Institute of Technology 256 unknown 102467578 n-TMcat13 n-Tm13 - 13 A3.1|13 nuclear encoded tRNA methionine 13 (anticodon CAT) tRNA 100035533 Hdlq5 - - 1 72.38 cM HDL QTL 5 unknown 100534633 Mm.421635 NR_045917 ENSMUSG00000087155 Gm15008 - - X A3.3|X 21.32 cM predicted gene 15008 ncRNA 666376 XM_011245308 Gm8068 EG666376 - 14|14 B predicted gene 8068 protein-coding 76594 Mm.108596 NM_029669 ENSMUSG00000024350 Dnajc18 2700075B01Rik|AU041129 - 18|18 B2 DnaJ heat shock protein family (Hsp40) member C18 protein-coding 102636844 Mm.439069 Gm16049 CH36-125B10.5|CH36-125B10.6 - 17|17 8.95 cM predicted gene 16049 ncRNA 53376 Mm.272770 NM_016808 ENSMUSG00000032010 Usp2 B930035K21Rik|Ubp41 - 9|9 A5.1 ubiquitin specific peptidase 2 protein-coding 216441 Mm.248373 NM_177615 ENSMUSG00000040441 Slc26a10 C78409|D630010I07 - 10|10 D3 solute carrier family 26, member 10 protein-coding 66263 Mm.392261 NR_015572 ENSMUSG00000097412 1810014B01Rik - - 10 C1|10 RIKEN cDNA 1810014B01 gene pseudo 102632030 Mm.126106 Gm16133 - - 13|13 32.8 cM predicted gene 16133 ncRNA 62801 D14Mit217 - - 14 36.32 cM DNA segment, Chr 14, Massachusetts Institute of Technology 217 unknown 20250 Mm.487021 NM_009128 ENSMUSG00000025203 Scd2 Mir5114|Scd-2|mir-5114|swty - 19 C3|19 37.98 cM stearoyl-Coenzyme A desaturase 2 protein-coding 108168664 XM_017318875 LOC108168664 - - Y B Y-linked testis-specific protein 1-like protein-coding 18708 Mm.259333 NM_001024955 ENSMUSG00000041417 Pik3r1 PI3K|p50alpha|p55alpha|p85alpha - 13 D1|13 53.92 cM phosphoinositide-3-kinase regulatory subunit 1 protein-coding 21220 T(5;16)55H T55H - - reciprocal translocation, Chr 5 and 16, Harwell 55 other 102636268 XR_391377 Gm33382 - - 7 B3|7 predicted gene, 33382 ncRNA 233280 Mm.389901 NM_153578 ENSMUSG00000047037 Nipa1 1110027G09Rik|A830014A18Rik|FSP3|Spg6 - 7|7 B5 non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human) protein-coding 29818 Mm.46181 NM_013868 ENSMUSG00000006221 Hspb7 27kDa|Hsp25-2|cvHsp - 4|4 D3 heat shock protein family, member 7 (cardiovascular) protein-coding 103183 AI316838 - - - expressed sequence AI316838 unknown 105244181 XR_866362 Gm39834 - - 2 C1.3|2 predicted gene, 39834 ncRNA 69010 Mm.2000 NM_181394 ENSMUSG00000035048 Anapc13 1810004D07Rik|APC13|SWM1 - 9|9 F1 anaphase promoting complex subunit 13 protein-coding 109279972 LOC109279972 Mm613 - - VISTA enhancer mm613 biological-region 102641432 Mm.421268 XR_877214 Gm38559 - - 18 A2|18 predicted gene, 38559 ncRNA 61039 DXMit103 - - X 7.25 cM DNA segment, Chr X, Massachusetts Institute of Technology 103 unknown 112189 Afw11 - - - abdominal fat weight QTL 11 unknown 102635722 XR_387305 Gm32985 - - 1 E2.2|1 predicted gene, 32985 ncRNA 232337 Mm.290847 NM_177684 ENSMUSG00000059689 Zfp637 AI646709|BC021601|Znf32 - 6|6 F1 zinc finger protein 637 protein-coding 110802 Pmp22-rs 22kDa - - peripheral myelin protein 22, related sequence protein-coding 666637 Gm8206 - - 14 A1|14 predicted gene 8206 pseudo 109280076 LOC109280076 Mm745 - - VISTA enhancer mm745 biological-region 209039 Mm.29389 NM_153533 ENSMUSG00000037003 Tns2 C1-ten|Tenc1|nep|nph - 15 F2|15 57.29 cM tensin 2 protein-coding 76441 Mm.211275 NM_001008231 ENSMUSG00000040260 Daam2 2310016D11Rik|AI843643|AW557870 - 17|17 C dishevelled associated activator of morphogenesis 2 protein-coding 102640670 XR_385245 Gm36684 - - 17 A1|17 predicted gene, 36684 ncRNA 111963 Mltr2 - - - modified polytropic long terminal repeat containing proviral locus 2 other 105247226 XR_881616 Gm42361 - - 4 E2|4 predicted gene, 42361 ncRNA 102639843 Gm36061 - - 7|7 predicted gene, 36061 ncRNA 102635186 Gm32588 - - 8|8 predicted gene, 32588 ncRNA 109870 Tcd3 Tcd-3|tcs-3|tcs3 - - t-complex distorter 3 protein-coding 78060 Mm.463884 NR_040753 ENSMUSG00000086365 4930593C16Rik - - 9|9 F4 RIKEN cDNA 4930593C16 gene ncRNA 77767 Mm.91712 NM_029972 ENSMUSG00000026830 Ermn A330104H05Rik|AI854460|ermin|mKIAA1189 - 2 C1.1|2 ermin, ERM-like protein protein-coding 258882 Mm.223176 NM_146882 ENSMUSG00000063350 Olfr874 MOR161-2 - 9|9 A4 olfactory receptor 874 protein-coding 225192 Mm.207073 NM_153087 ENSMUSG00000037346 Hrh4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R - 18|18 A1 histamine receptor H4 protein-coding 14667 Mm.287807 NM_010299 ENSMUSG00000000594 Gm2a AA408702|AW215435|GM2-AP|SAP-3 - 11 B1.3|11 32.13 cM GM2 ganglioside activator protein protein-coding 108168454 Gm15216 - - X F5|X 76.75 cM 40S ribosomal protein S28 pseudogene pseudo 102635085 XR_385103 Gm32509 - - 16 C4|16 predicted gene, 32509 ncRNA 108448 Pmv52 Pmv-52 - - polytropic murine leukemia virus 52 other 62687 D16Mit124 - - 16 21.11 cM DNA segment, Chr 16, Massachusetts Institute of Technology 124 unknown 674896 Gm29690 - - 12|12 predicted gene, 29690 protein-coding 102467258 n-TNgtt10 n-Tn10 - 3 F2.1|3 nuclear encoded tRNA asparagine 10 (anticodon GTT) tRNA 110185 Cinda2 - - 12 2.59 cM cytokine induced activation 2 protein-coding 102637302 Mm.488934 XR_874577 ENSMUSG00000085500 Gm16976 - - 14 C1|14 22.59 cM predicted gene, 16976 ncRNA 100416277 Gm16073 - - 9|9 C ribosomal protein S2 pseudogene pseudo 15516 Mm.2180 NM_008302 ENSMUSG00000023944 Hsp90ab1 90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb - 17 B3|17 22.59 cM heat shock protein 90 alpha (cytosolic), class B member 1 protein-coding 399597 B130011D17Rik - - - RIKEN cDNA B130011D17 gene protein-coding 21050 T(10;18)12Rl T12Rl - - reciprocal translocation, Chr 10 and 18, Russell 12 other 574417 Mm.386354 NM_001025385 ENSMUSG00000052850 Tas2r137 T2R37|Tas2r3|mt2r41 - 6|6 B1 taste receptor, type 2, member 137 protein-coding 100417253 Gm18483 - - 6|6 B2.2 crumbs homolog 1 pseudogene pseudo 105243951 XR_865495 Gm15669 - - 1 C3|1 33.75 cM predicted gene 15669 ncRNA 100035602 Egq8 - - - early growth QTL 8 unknown 243996 Mm.443270 NM_172901 ENSMUSG00000084234 4933405O20Rik - - 7|7 B4 RIKEN cDNA 4933405O20 gene protein-coding 102640242 Mm.403786 XR_870017 Gm36356 Gm45340 - 7 F3|7 predicted gene, 36356 ncRNA 76614 Mm.235123 NM_029673 ENSMUSG00000052337 Immt 1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89 - 6|6 C1 inner membrane protein, mitochondrial protein-coding 61581 DXMit140 - - X 33.5 cM DNA segment, Chr X, Massachusetts Institute of Technology 140 unknown 53146 199O21-T7 - - - DNA segment, 199O21-T7 unknown 105242574 XR_868705 Gm38748 - - 5 G3|5 predicted gene, 38748 ncRNA 382545 Gm11501 - - 11|11 D YKT6 homolog pseudogene pseudo 108167905 XR_001780234 Gm46284 - - 11 B3|11 predicted gene, 46284 ncRNA 100036197 Cdcs8 - - 12 37.86 cM cytokine deficiency colitis susceptibility 8 unknown 105244002 XR_865719 Gm39697 - - 1 H2.3|1 predicted gene, 39697 ncRNA 100124454 Mir696 Mirn696|mmu-mir-696 - - microRNA 696 ncRNA 66307 Mm.182574 NM_025478 ENSMUSG00000024601 Isoc1 2610034N03Rik - 18 D3|18 isochorismatase domain containing 1 protein-coding 66991 Mm.471745 NM_025890 ENSMUSG00000092622 Khdc3 2410004A20Rik|AI467128|FILIA|OEEP48 - 9|9 D KH domain containing 3, subcortical maternal complex member protein-coding 74885 Mm.449991 4930453O03Rik - - 1|1 RIKEN cDNA 4930453O03 gene unknown 105245789 XR_874726 Gm41181 - - 14 D1|14 predicted gene, 41181 ncRNA 102633366 LOC102633366 - - 11 A3.3 60S ribosomal protein L7-like pseudo 102467408 n-TVgac1 n-Tv20 - - nuclear encoded tRNA valine 1 (anticodon GAC) tRNA 100124366 Traj23 Gm16821 - 14|14 C2 T cell receptor alpha joining 23 other 140643 Fembm5 - - 4 70.02 cM femoral bone morphometry 5 unknown 27644 D0Hgu10 - - - DNA segment, Human Genetics Unit 10 unknown 100862455 XM_003689218 LOC100862455 - - - 60S ribosomal protein L23 protein-coding 83435 Mm.41636 NM_031256 ENSMUSG00000002733 Plekha3 FAPP1 - 2|2 C3 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3 protein-coding 665601 Gm7707 EG665601 - 14|14 B tetratricopeptide repeat domain 35 pseudogene pseudo 61579 DXMit150 - - X 52.89 cM DNA segment, Chr X, Massachusetts Institute of Technology 150 unknown 319521 Mm.245784 A730056I06Rik BF642823 - 8|8 B3.3 RIKEN cDNA A730056I06 gene protein-coding 94111 Mm.196672 NM_053172 ENSMUSG00000053863 Mepe Of45 - 5|5 E5 matrix extracellular phosphoglycoprotein with ASARM motif (bone) protein-coding 102636161 XR_386703 Gm33305 - - 19 C3|19 predicted gene, 33305 ncRNA 100416373 Gm18079 - - 14|14 A3 ribosomal protein L5 pseudogene pseudo 57810 Mm.80509 NM_021339 ENSMUSG00000038119 Cdon CDO|Cd0|Orcam - 9|9 A4 cell adhesion molecule-related/down-regulated by oncogenes protein-coding 73093 Mm.249245 3110006O06Rik - - 13|13 C1 RIKEN cDNA 3110006O06 gene unknown 112211 Daq14 - - 15 30.86 cM directional asymmetry QTL 14 unknown 75107 4930509H03Rik - - 3|3 RIKEN cDNA 4930509H03 gene protein-coding 75722 Mm.243747 NR_040521 ENSMUSG00000075070 4932412D23Rik Gm10809 - 16|16 B4 RIKEN cDNA 4932412D23 gene ncRNA 73859 Mm.272239 4930414N08Rik - - 16|16 C4 RIKEN cDNA 4930414N08 gene unknown 22146 Mm.88212 NM_009448 ENSMUSG00000043091 Tuba1c M[a]6|Tuba6 - 15|15 F1 tubulin, alpha 1C protein-coding 241139 LOC241139 - - 1|1 C5 uncharacterized LOC241139 unknown 102631513 Mm.383436 XR_381040 Gm11998 - - 11 A1|11 6.96 cM predicted gene 11998 ncRNA 107047 Mm.150701 NM_134138 ENSMUSG00000024537 Psmg2 1700017I17Rik|AW545363|Clast3|Tnfsf5ip1 - 18|18 E1 proteasome (prosome, macropain) assembly chaperone 2 protein-coding 102465221 NR_105837 ENSMUSG00000098932 Mir6410 Gm27916|mmu-mir-6410 - 10|10 C1 microRNA 6410 ncRNA 100124675 Mm.123831 Trbv13-2 TCRBV8S2|Tcrb|Tcrb-V8.2 - 6 19.2 cM|6 B1 T cell receptor beta, variable 13-2 other 61145 DXMit213 - - X 47.36 cM DNA Segment, Chr X Massachusetts Institute of Technology 213 unknown 108167334 XR_388758 Gm45945 - - 11 B3|11 predicted gene, 45945 ncRNA 110120390 LOC110120390 - - - VISTA enhancer mm683 biological-region 228756 Mm.189390 NM_177655 ENSMUSG00000055177 Cstl1 RCET1|RCET2|RCET3 - 2|2 G3 cystatin-like 1 protein-coding 102638964 XR_379654 Gm35397 - - 9 E1|9 predicted gene, 35397 ncRNA 100041218 Mm.394217 Gm3211 - - 9 E1|9 predicted gene 3211 unknown 60710 D6Mit82 - - 6 13.57 cM DNA segment, Chr 6, Massachusetts Institute of Technology 82 unknown 105245033 XR_870989 Gm40544 - - 9 E3.1|9 predicted gene, 40544 ncRNA 225228 Gm4835 EG225228 - 18|18 A1 mortality factor 4 like 1 pseudogene pseudo 100043474 Mm.463172 NM_001199062 ENSMUSG00000096169 Olfr1564 Ga_x5j8b7w2m1k-1-552|Gm4461 - 17 B1|17 olfactory receptor 1564 protein-coding 66462 Mm.28242 NM_025577 ENSMUSG00000058833 Rex1bd 2810428I15Rik - 8 B3.3|8 required for excision 1-B domain containing protein-coding 105242566 Gm38742 - - 5|5 predicted gene, 38742 protein-coding 110334 Cdr3 - - 11|11 cerebellar degeneration-related 3 protein-coding 111466 Gln3-3 - - - GLN retrotransposon family 3-3 other 78193 Mm.189508 NR_040516 ENSMUSG00000087309 4930528P14Rik - - 2|2 E4 RIKEN cDNA 4930528P14 gene ncRNA 77241 Mm.444249 9430013L14Rik - - 6|6 RIKEN cDNA 9430013L14 gene protein-coding 13709 Mm.20938 NM_007920 ENSMUSG00000036461 Elf1 Elf-1|Sts1|mElf-1|p70 - 14|14 D3 E74-like factor 1 protein-coding 628098 Ighv5-12-4 EG628098|Gm6839 - 12|12 F1 immunoglobulin heavy variable 5-12-4 other 72860 Mm.423019 2900017G11Rik - - 4|4 RIKEN cDNA 2900017G11 gene protein-coding 102636784 LOC102636784 - - X B histone H3.3-like pseudo 77590 Mm.213582 NM_029935 ENSMUSG00000030930 Chst15 4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598 - 7|7 F3 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 protein-coding 50797 Mm.400464 NM_015827 ENSMUSG00000032458 Copb2 AI256832 - 9|9 E3.3 coatomer protein complex, subunit beta 2 (beta prime) protein-coding 100502606 Mm.484329 Gm19279 - - 9|9 36.19 cM predicted gene, 19279 unknown 258930 Mm.377753 NM_146928 ENSMUSG00000049894 Olfr808 MOR112-2 - 10|10 D3 olfactory receptor 808 protein-coding 105243170 XR_870344 Gm39162 - - 8 A4|8 predicted gene, 39162 ncRNA 105242608 XR_868821 Gm38776 - - 6 A3.1|6 predicted gene, 38776 ncRNA 668183 Gm9027 EG668183 - 16|16 C1.3 predicted gene 9027 pseudo 100049594 Fmtq12 - - - femur mechanical trait QTL 12 unknown 108167425 XR_001778118 Gm45984 - - 7 B3|7 predicted gene, 45984 ncRNA 635580 Mm.359509 NM_001243032 Gm16445 EG667285 - X|X F3 predicted pseudogene 16445 protein-coding 69071 Mm.29431 NM_133706 ENSMUSG00000037278 Tmem97 1810014L12Rik|AI115531|AL022956|D11Bhm182e - 11 B5|11 46.74 cM transmembrane protein 97 protein-coding 108072 Mm.134265 NM_173372 ENSMUSG00000000617 Grm6 BC021919|Gm3|Gprc1f|mGluR6|nerg1|nob2|nob3|nob4 - 11|11 B1.3 glutamate receptor, metabotropic 6 protein-coding 74682 Mm.87389 NM_172470 ENSMUSG00000066643 Wdr35 4930459M12Rik|4931430C06|mKIAA1336 - 12|12 A1.1 WD repeat domain 35 protein-coding 433759 Mm.202504 NM_008228 ENSMUSG00000028800 Hdac1 HD1|Hdac1-ps|MommeD5|RPD3 - 4 D2.2|4 63.26 cM histone deacetylase 1 protein-coding 73477 Mm.410863 NR_040693 ENSMUSG00000100573 1700081H04Rik - - 5|5 F RIKEN cDNA 1700081H04 gene ncRNA 102926 Atg4a-ps Apg4a|Apg4a-ps|Atg4al-ps|Autl2 - 3|3 F2.2 autophagy related 4A, pseudogene pseudo 22365 Mm.263185 NM_013841 ENSMUSG00000015747 Vps45 AI462172|AW554165|mVps45 - 3 F2.1|3 41.65 cM vacuolar protein sorting 45 protein-coding 78072 Mm.112231 5930435M05Rik - - 7|7 RIKEN cDNA 5930435M05 gene protein-coding 102635706 Gm32976 - - 2 C1.1|2 predicted gene, 32976 pseudo 73264 1700037N05Rik - - 3|3 RIKEN cDNA 1700037N05 gene protein-coding 102638467 XR_373797 Gm35023 - - 1 H5|1 predicted gene, 35023 ncRNA 353327 Mm.423672 Mkrn1-ps1 - - 5|5 E1 makorin, ring finger protein 1, pseudogene 1 pseudo 102635866 Gm33096 - - 8|8 predicted gene, 33096 pseudo 625646 Rpl38-ps1 Gm13020 - 4|4 D3 ribosomal protein L38, pseudogene 1 pseudo 102633599 XR_387011 Gm31385 - - X D|X predicted gene, 31385 ncRNA 233107 Mm.76761 NM_146188 ENSMUSG00000030499 Kctd15 BC031749 - 7|7 B2 potassium channel tetramerisation domain containing 15 protein-coding 216233 Mm.474283 NM_007706 ENSMUSG00000020027 Socs2 8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg - 10 C2|10 49.35 cM suppressor of cytokine signaling 2 protein-coding 56322 Mm.18803 NM_019818 ENSMUSG00000020843 Timm22 Tim22 - 11|11 B5 translocase of inner mitochondrial membrane 22 protein-coding 61091 D6Mit346 - - 6 8.16 cM DNA segment, Chr 6, Massachusetts Institute of Technology 346 unknown 71382 Mm.379196 NM_027777 ENSMUSG00000005907 Pex1 5430414H02Rik|E330005K07Rik|ZWS1 - 5|5 A1 peroxisomal biogenesis factor 1 protein-coding 100526480 NR_037247 ENSMUSG00000092813 Mir3086 mir-3086|mmu-mir-3086 - 19 D2|19 54.54 cM microRNA 3086 ncRNA 76003 Mm.447060 NR_045993 ENSMUSG00000086259 Tmem150cos 5830403M04Rik - 5|5 E4 transmembrane protein 150C, opposite strand ncRNA 98878 Mm.132226 NM_133838 ENSMUSG00000027293 Ehd4 2210022F10Rik|AI197390|AI846352|AV006278|Past2 - 2|2 E5 EH-domain containing 4 protein-coding 216964 Mm.341211 NM_001024920 ENSMUSG00000044328 Trp53i13 2410019G02Rik|Tp53i13 - 11|11 B5 transformation related protein 53 inducible protein 13 protein-coding 16701 Mm.3524 NM_010673 ENSMUSG00000062433 Krtap6-2 AI646275|HGTpII.4 - 16|16 C3.3 keratin associated protein 6-2 protein-coding 74026 Mm.258352 NM_028722 ENSMUSG00000052915 Msl1 2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1 - 11|11 D male specific lethal 1 protein-coding 19395 Mm.77017 NM_011242 ENSMUSG00000032946 Rasgrp2 CDC25L|Caldaggef1 - 19|19 A RAS, guanyl releasing protein 2 protein-coding 666456 Gm8116 EG666456 - 9|9 E1 predicted gene 8116 pseudo 71561 8430437N05Rik - - 14|14 RIKEN cDNA 8430437N05 gene unknown 105242637 XR_869008 Gm38796 - - 6 B2.1|6 predicted gene, 38796 ncRNA 109661 Ds - - - disorganization unknown 75349 Mm.233613 NR_045714 ENSMUSG00000115656 4930556J02Rik - - 14|14 D1 RIKEN cDNA 4930556J02 gene ncRNA 74302 Mm.425669 NM_028860 ENSMUSG00000034354 Mtmr3 1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371 - 11|11 A1 myotubularin related protein 3 protein-coding 105247139 XR_881307 Gm42293 - - 4 B3|4 predicted gene, 42293 ncRNA 268451 Mm.130656 NM_175543 ENSMUSG00000017639 Rab11fip4 A730072L08Rik|RAB11-FIP4|mKIAA1821 - 11 B5|11 46.88 cM RAB11 family interacting protein 4 (class II) protein-coding 105242626 XR_868963 Gm13855 - - 6 A3.3|6 14.76 cM predicted gene 13855 ncRNA 226250 Mm.226284 NM_146102 ENSMUSG00000025083 Afap1l2 AU041783|C86904|mKIAA1914 - 19|19 D2 actin filament associated protein 1-like 2 protein-coding 100418454 Gm19222 - - 14|14 D1 protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform pseudogene pseudo 100125849 Sh3 - - - sperm hammerhead 3 unknown 14125 Mm.5266 NM_010184 ENSMUSG00000005339 Fcer1a FcERI|Fce1a|Fcr-5|fcepsilonri - 1 H3|1 80.33 cM Fc receptor, IgE, high affinity I, alpha polypeptide protein-coding 101359 Mm.22818 NM_001101443 ENSMUSG00000079654 Prrt4 AW455481|D330027H18Rik - 6|6 A3.3 proline-rich transmembrane protein 4 protein-coding 102465562 NR_105897 ENSMUSG00000098497 Mir6932 Gm27691|mmu-mir-6932 - 11|11 E1 microRNA 6932 ncRNA 387142 NR_029575 ENSMUSG00000105904 Mir24-1 Mirn189|Mirn24|Mirn24-1|miR-189|miR-24|miR-24-1 - 13|13 B3 microRNA 24-1 ncRNA 70375 Mm.17834 NM_027407 ENSMUSG00000026018 Ica1l 1700030B17Rik|Als2cr15|b2b3465Clo - 1|1 C2 islet cell autoantigen 1-like protein-coding 110254 Crl1 Crl-1 - - complement receptor lymphocyte 1 protein-coding 100124392 Traj11 Gm16654 - 14|14 C2 T cell receptor alpha joining 11 other 13142 Mm.20115 NM_010018 ENSMUSG00000042096 Dao AI987963|DAAO|DAMOX|Dao-1|Dao1 - 5 F|5 55.93 cM D-amino acid oxidase protein-coding 387342 Mm.349283 NM_199154 ENSMUSG00000053389 Tas2r107 STC5-1|T2R07|T2R107|T2R4|Tas2r7|mGR06|mt2r43 - 6 F3|6 63.49 cM taste receptor, type 2, member 107 protein-coding 84035 Mm.209989 NM_032396 ENSMUSG00000020393 Kremen1 AV002070|Kremen|Krm1 - 11|11 A1 kringle containing transmembrane protein 1 protein-coding 19699 Mm.425236 NM_011261 ENSMUSG00000042453 Reln reeler|rl - 5 A3|5 9.98 cM reelin protein-coding 51851 D9Sut1e - - - DNA segment, Chr 9, Sutcliffe 1 expressed unknown 102632144 Mm.446364 XR_381624 Gm16246 - - 12 C1|12 24.7 cM predicted gene 16246 ncRNA 27221 Mm.391010 NM_013733 ENSMUSG00000002835 Chaf1a AL023013|AL024058|CAF-1|Cac1p - 17|17 D chromatin assembly factor 1, subunit A (p150) protein-coding 442805 Mm.226869 NM_001002773 D130007C19Rik - - 4|4 D2.2 RIKEN cDNA D130007C19 gene unknown 622356 Gm13888 - - 2|2 E2 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 pseudogene pseudo 100504492 Gm20987 - - Y|Y predicted gene, 20987 protein-coding 26363 Mm.282679 NM_025295 ENSMUSG00000021900 Btd - - 14|14 B biotinidase protein-coding 666190 XM_017313715 Gm7972 EG666190 - 9|9 D predicted gene 7972 protein-coding 102635006 XR_382886 Gm32450 - - 13 D2.1|13 predicted gene, 32450 ncRNA 74518 Mm.159228 XR_872263 8430419K02Rik - - 11|11 A3.1 RIKEN cDNA 8430419K02 gene ncRNA 492859 Sluc28 - - 18 51.92 cM susceptibility to lung cancer 28 unknown 106099061 Th2-lcr - - 11 A5-B1 Th2 cytokine locus control region biological-region 627060 Fpr-rs5 EG627060 - 17|17 A3.2 formyl peptide receptor, related sequence 5 pseudo 105244107 XR_866092 Gm39780 - - 2 B|2 predicted gene, 39780 ncRNA 102632296 XR_377134 Gm30408 - - 5 G2|5 predicted gene, 30408 ncRNA 550619 Mm.425179 NM_001017362 ENSMUSG00000066224 Arid3c - - 4|4 A5 AT rich interactive domain 3C (BRIGHT-like) protein-coding 100316693 NR_035459 ENSMUSG00000089371 Mir1938 mir-1938|mmu-mir-1938 - 12 B1|12 18.06 cM microRNA 1938 ncRNA 105244441 XR_867284 Gm40048 - - 3 C|3 predicted gene, 40048 ncRNA 668961 LOC668961 - - X|X A1.1 spindlin 2 family member protein-coding 53090 CA25.15 - - - DNA segment, CA25.15 unknown 195712 Mm.425247 XR_376915 4930421P07Rik - - 5|5 B3 RIKEN cDNA 4930421P07 gene unknown 18766 Mm.89965 NM_011105 ENSMUSG00000052496 Pkdrej - - 15|15 E2 polycystin (PKD) family receptor for egg jelly protein-coding 399641 A7300091P13Rik - - - RIKEN cDNA A7300091P13 gene protein-coding 100462734 Gm19242 - - 3 F1|3 38.24 cM ribosomal protein S27 pseudogene pseudo 102637452 XR_384819 Gm34256 - - 16 B2|16 predicted gene, 34256 ncRNA 319683 Mm.194241 E230008J23Rik - - 19|19 RIKEN cDNA E230008J23 gene protein-coding 100417984 LOC100417984 - - 9|9 E3.3 DnaJ heat shock protein family (Hsp40) member C14 pseudogene pseudo 329626 Mm.379490 NM_177853 Fgf2os A930011G24|Gm12541 - 3 B|3 fibroblast growth factor 2, opposite strand unknown 61354 D4Mit152 - - 4 39.46 cM DNA segment, Chr 4, Massachusetts Institute of Technology 152 unknown 635253 Mm.426169 NM_001137547 ENSMUSG00000067215 Usp51 AV136873 - X|X F3 ubiquitin specific protease 51 protein-coding 320432 9230110F11Rik - - 8|8 RIKEN cDNA 9230110F11 gene protein-coding 14555 Mm.252391 NM_010271 ENSMUSG00000023019 Gpd1 AI747587|Gdc-1|Gdc1|mKIAA4010 - 15 F1|15 56.13 cM glycerol-3-phosphate dehydrogenase 1 (soluble) protein-coding 93897 Mm.197628 NM_175284 ENSMUSG00000081683 Fzd10 Fz-10 - 5|5 G1.3 frizzled class receptor 10 protein-coding 77832 Mm.239698 NM_029992 ENSMUSG00000002486 Tchp A930031F18Rik|AV279199 - 5|5 F trichoplein, keratin filament binding protein-coding 26910 Mm.8024 NM_012013 ENSMUSG00000030001 Figla FIGalpha|bHLHc8 - 6|6 C3 folliculogenesis specific basic helix-loop-helix protein-coding 102467478 n-TNgtt11 n-Tn11 - 3 F2.1|3 nuclear encoded tRNA asparagine 11 (anticodon GTT) tRNA 268391 Mm.339727 A830031A19Rik Gm662 - 11|11 A3.2 RIKEN cDNA A830031A19 gene unknown 60763 D2Mit61 - - 2 34.9 cM DNA segment, Chr 2, Massachusetts Institute of Technology 61 unknown 270669 Mm.37577 NM_172307 ENSMUSG00000046873 Mbtps2 9630032G22Rik|AI662535 - X|X F4 membrane-bound transcription factor peptidase, site 2 protein-coding 68215 Mm.219389 NM_026620 ENSMUSG00000027349 Fam98b 2610510H03Rik - 2|2 E5 family with sequence similarity 98, member B protein-coding 108168515 XM_017318707 ENSMUSG00000095979 LOC108168515 - - Y C1 X-linked lymphocyte-regulated protein PM1-like protein-coding 667324 Gm8574 EG667324 - 6|6 C1 aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase pseudogene pseudo 105244328 XR_866860 Gm14161 - - 2 H1|2 75.26 cM predicted gene 14161 ncRNA 233315 Mm.214959 NM_172742 ENSMUSG00000030522 Mtmr10 BB128963|C79734 - 7|7 C myotubularin related protein 10 protein-coding 61961 D8Mit290 - - 8 14.42 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 290 unknown 73904 Mm.70992 NR_045954 ENSMUSG00000097697 4833412C05Rik Bigheart - 7|7 C RIKEN cDNA 4833412C05 gene ncRNA 70445 Mm.29597 NM_054042 ENSMUSG00000056481 Cd248 2610111G01Rik|AI842296|Cd164l1|Tem1 - 19|19 A CD248 antigen, endosialin protein-coding 100503117 Mm.250517 NR_045393 ENSMUSG00000102047 2010010A06Rik 5033420E22Rik - 18|18 E3 RIKEN cDNA 2010010A06 gene ncRNA 625094 Gm13461 - - 2|2 B RAN, member RAS oncogene family, pseudogene pseudo 20888 Mm.10108 NM_018751 ENSMUSG00000023943 Sult1c1 (PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST - 17 C|17 28.07 cM sulfotransferase family, cytosolic, 1C, member 1 protein-coding 100039498 Gm2270 - - 12 D3|12 predicted gene 2270 unknown 97715 Mm.5780 C79015 - - - expressed sequence C79015 unknown 73207 Mm.37660 3110068a07rik - - 14|14 RIKEN cDNA 3110068A07 gene unknown 100417336 Gm18539 - - 6|6 B2.3 diamine oxidase-like protein 2 pseudogene pseudo 102635557 Gm32859 - - 14|14 predicted gene, 32859 ncRNA 100416084 Gm17912 - - 11|11 B2 surfeit gene 1 pseudogene pseudo 102633235 XR_389763 Gm31113 - - 5 A3|5 predicted gene, 31113 ncRNA 109387 Cbm1 Cbs1a - 1 81.08 cM cerebellum weight 1 unknown 105246542 XR_877749 Gm41816 - - 19 B|19 predicted gene, 41816 ncRNA 71151 Mm.274160 NM_027698 ENSMUSG00000030929 Eri2 4933424N09Rik|Exod1|mKIAA1504 - 7 F2|7 exoribonuclease 2 protein-coding 102467350 n-TKttt23 Trnak-uuu|n-TKctt23|n-Tk23 - 13 A3.1|13 nuclear encoded tRNA lysine 23 (anticodon TTT) tRNA 18089 Mm.56994 NM_008699 ENSMUSG00000044220 Nkx2-3 Nkx-2.3|Nkx2.3|tinman - 19 C3|19 36.67 cM NK2 homeobox 3 protein-coding 102634411 XR_376257 Gm31999 - - 3 H3|3 predicted gene, 31999 ncRNA 259119 Mm.377859 NM_147115 ENSMUSG00000045792 Olfr578 MOR7-1 - 7|7 E3 olfactory receptor 578 protein-coding 27382 Mm.441379 NM_013776 ENSMUSG00000000701 Tcl1b5 D12Ertd644e - 12 E|12 55.23 cM T cell leukemia/lymphoma 1B, 5 protein-coding 105247123 XR_001784278 Gm42280 - - 4 B1|4 predicted gene, 42280 ncRNA 108589 Iap5ra9 - - - intracisternal A-type particle, U5 region, SINE repeat a-9 other 100503719 Gm13437 - - 2|2 24.19 cM predicted gene 13437 pseudo 100861668 Mm.491087 NM_001270553 ENSMUSG00000095294 Gm21119 - - 8 A2|8 predicted gene, 21119 protein-coding 102636432 XR_875128 Gm33497 - - 15 B3.1|15 predicted gene, 33497 ncRNA 381072 Mm.328842 NM_001031621 ENSMUSG00000035435 Abca17 - - 17|17 A3.3 ATP-binding cassette, sub-family A (ABC1), member 17 protein-coding 108614 Iap3rc28 - - - intracisternal A-type particle, U3 region, SINE repeat c-28 other 27449 8T - - - DNA segment, 8T unknown 101447999 NR_126540 Mirc35hg - - 6 A3.3|6 microRNA cluster 35, host gene ncRNA 102639992 Mm.375738 NR_152766 ENSMUSG00000112835 Gm36173 - - 10 B3|10 predicted gene, 36173 ncRNA 100035082 Tailaq1 - - - tail length adjusted QTL 1 unknown 102631700 Gm29377 - - Y|Y predicted gene 29377 protein-coding 109532 Eae18 Eae11 - - experimental allergic encephalomyelitis susceptibility 18 unknown 102634458 XR_392487 ENSMUSG00000099636 Gm28422 - - Y D|Y predicted gene 28422 ncRNA 235043 Mm.253329 NM_178577 ENSMUSG00000040883 Tmem205 - - 9|9 A3 transmembrane protein 205 protein-coding 67402 Mm.87357 NM_026132 ENSMUSG00000038709 Txndc8 4930429J24Rik|Sptrx-3|Sptrx3|Trx6 - 4|4 B3 thioredoxin domain containing 8 protein-coding 102640778 XR_388729 Cdrt4os2 Gm14526 - 11 B3|11 38.84 cM CMT1A duplicated region transcript 4, opposite strand 2 ncRNA 100032 Mm.158361 AI115522 - - - expressed sequence AI115522 unknown 53319 Mm.7271 NM_016813 ENSMUSG00000010097 Nxf1 Mex67|Mvb1|Tap - 19 A|19 5.5 cM nuclear RNA export factor 1 protein-coding 435391 Mm.295860 NM_001013826 ENSMUSG00000063821 Dupd1 EG435391 - 14|14 A3 dual specificity phosphatase and pro isomerase domain containing 1 protein-coding 100417298 Gm18514 - - 10|10 B4 crumbs homolog 1 pseudogene pseudo 100036426 Hrtfm4 - - 18 34.36 cM heart failure modifier 4 unknown 102640109 Gm36258 - - 19|19 predicted gene, 36258 ncRNA 56551 Mm.291917 NM_019913 ENSMUSG00000005354 Txn2 2510006J11Rik|AI788873|Trx2 - 15|15 E1 thioredoxin 2 protein-coding 102636714 XR_376557 Gm33710 - - 4 D1|4 predicted gene, 33710 ncRNA 14465 Mm.329287 NM_010258 ENSMUSG00000005836 Gata6 AA410133|GATA-6 - 18 A1|18 5.63 cM GATA binding protein 6 protein-coding 100417407 Gm18594 - - 5|5 F coiled-coil domain containing 77 pseudogene pseudo 665338 Gm7592 EG665338 - 1|1 C5 predicted gene 7592 protein-coding 22341 Mm.1402 NM_009506 ENSMUSG00000031520 Vegfc AW228853|VEGF-C - 8|8 B1.3 vascular endothelial growth factor C protein-coding 108168475 LOC108168475 - - X F3 40S ribosomal protein S25 pseudogene pseudo 102634001 XR_373519 Gm31691 - - 1 C3|1 predicted gene, 31691 ncRNA 108167519 XR_001778511 Gm46030 - - 8 A1.1|8 predicted gene, 46030 ncRNA 100034874 Obq19 - - 17 4.92 cM obesity QTL 19 unknown 19498 Rb(16.17)75Lub Rb75Lub - - Robertsonian translocation, Chr 16 and 17, Lubeck 75 other 62522 D11Mit136 - - 11 24.5 cM DNA segment, Chr 11, Massachusetts Institute of Technology 136 unknown 105246062 Mm.156752 XR_875867 D330022H12Rik - - 16|16 A1 RIKEN cDNA D330022H12 gene ncRNA 106345157 Gm45934 - - 18 E1|18 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 pseudogene pseudo 76701 Mm.489680 NM_001033875 ENSMUSG00000062478 Ctrc 1810044E12Rik - 4|4 E1 chymotrypsin C (caldecrin) protein-coding 100113369 Afteq1 - - - acute functional tolerance to ethanol QTL 1 unknown 74671 4930448D08Rik - - 18|18 RIKEN cDNA 4930448D08 gene protein-coding 62226 D17Mit29 - - 17 14.84 cM DNA segment, Chr 17, Massachusetts Institute of Technology 29 unknown 258156 Mm.377364 NM_001011854 ENSMUSG00000109659 Olfr605 GA_x5J8B7TSRWK-430-5|MOR202-22P|MOR24-5 - 7|7 E3 olfactory receptor 605 protein-coding 100039585 Mm.483167 NM_001110250 ENSMUSG00000073245 Gm14819 - - X A3.3|X predicted gene 14819 protein-coding 108167437 XR_001778171 ENSMUSG00000109021 Gm44812 - - 7 C|7 predicted gene 44812 ncRNA 102632166 Gm30312 - - Y|Y predicted gene, 30312 protein-coding 380701 Mm.340166 NM_001033542 ENSMUSG00000069855 Slc47a2 4933429E10Rik - 11|11 B2 solute carrier family 47, member 2 protein-coding 107966123 Sox10-mcs1c/2 MCS1C|MCS2|Sox10-MCS1C|Sox10-MCS2|U5 - - MCS1C/MCS2 enhancer region 5' of Sox10 biological-region 619960 Igkv12-41 Gm16848 - 6|6 C1 immunoglobulin kappa chain variable 12-41 other 105245397 Gm40859 - - 12|12 predicted gene, 40859 ncRNA 102640289 Gm36396 - - 3|3 predicted gene, 36396 ncRNA 102634753 NR_110516 ENSMUSG00000086833 Gm12440 - - 3 F2.2|3 43.03 cM predicted gene 12440 ncRNA 100041034 Mm.394746 NR_131981 LOC100041034 - - 1|1 Sp110 nuclear body protein pseudogene pseudo 100417633 Gm14900 - - X|X E1 transmembrane 9 superfamily member 3 pseudogene pseudo 76415 Mm.259739 NM_175240 ENSMUSG00000046826 Fam187b 1700020B09Rik|Tmem162 - 7|7 B1 family with sequence similarity 187, member B protein-coding 28277 D10Jhu79 - - - DNA segment, Chr 10, Johns Hopkins University 79 unknown 102633750 XM_017319387 Gm10130 - - 2 G3|2 74.31 cM predicted gene 10130 protein-coding 108599 Iap3ra12 - - - intracisternal A-type particle, U3 region, SINE repeat a-12 other 100039501 Gm2272 - - 1|1 H6 poly(A) binding protein, nuclear 1 pseudogene pseudo 67776 Mm.290950 NM_172767 ENSMUSG00000023186 Vwa5a 5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a - 9|9 A5.1 von Willebrand factor A domain containing 5A protein-coding 100416048 Gm11653 - - 11|11 E1 snurportin 1 pseudogene pseudo 100041735 Mm.464176 NM_001256885 ENSMUSG00000095295 Gm3488 100041747|Gm3494 - 14 A1|14 predicted gene, 3488 protein-coding 434057 Nat8b-ps EG434057|Nat8b - 6|6 C3 N-acetyltransferase 8B, pseudogene pseudo 114893 Mm.374810 NM_033623 ENSMUSG00000027708 Dcun1d1 Rp42|SCCRO|Tes3|pTes3 - 3|3 B DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) protein-coding 19891 Mm.2870 NM_011284 ENSMUSG00000028884 Rpa2 AA409079|AI325195|AU020965|RPA34|Rf-A2 - 4|4 D2.3 replication protein A2 protein-coding 53331 Mm.248042 NM_016797 ENSMUSG00000019998 Stx7 AI315064|AI317144|AW107239|Syn7 - 10|10 A4 syntaxin 7 protein-coding 330850 Mm.106035 NR_131057 ENSMUSG00000110151 Gm38416 4732460I24|Gm45526 - 8|8 E1 predicted gene, 38416 ncRNA 105242840 XR_882615 Gm45920 - - 7 A1|7 predicted gene, 45920 ncRNA 105246233 XR_876668 Gm41545 - - 17 A3.3|17 predicted gene, 41545 ncRNA 80910 Mm.160369 NM_030720 ENSMUSG00000063234 Gpr84 EX33 - 15|15 F3 G protein-coupled receptor 84 protein-coding 65246 Mm.152987 NM_023045 ENSMUSG00000022100 Xpo7 4930506C02Rik|BB164534|Ranbp16|exp7 - 14|14 D2 exportin 7 protein-coding 102638204 XR_378371 Gm34821 - - 7 E2|7 predicted gene, 34821 ncRNA 622208 Mm.471544 NR_077221 Gm6297 - - 4 A5|4 predicted gene 6297 ncRNA 105243995 XR_865691 Gm39690 - - 1 H2.2|1 predicted gene, 39690 ncRNA 102634137 Gm31793 - - 10|10 predicted gene, 31793 ncRNA 100101434 Cia38 - - - collagen induced arthritis QTL 38 unknown 57444 Mm.322843 NM_020583 ENSMUSG00000039236 Isg20 1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45 - 7|7 D2 interferon-stimulated protein protein-coding 75616 Mm.491164 NM_001048250 ENSMUSG00000071180 Smim15 2810008M24Rik - 13|13 D2.1 small integral membrane protein 15 protein-coding 74281 Mm.159156 NM_028852 ENSMUSG00000049653 Spatc1 1700084J23Rik|speriolin - 15|15 D3 spermatogenesis and centriole associated 1 protein-coding 108167495 LOC108167495 - - 7 B1 major allergen I polypeptide chain 1-like pseudo 100039109 NR_037700 Gm2049 - - 2 H4|2 predicted gene 2049 unknown 68581 Mm.379159 NM_026775 ENSMUSG00000021248 Tmed10 1110014C03Rik|Tmp21|p23|p24delta1 - 12|12 D1-D2 transmembrane p24 trafficking protein 10 protein-coding 217344 Mm.89695 NM_172572 ENSMUSG00000020806 Rhbdf2 4732465I17Rik|Rhbdl6|cub - 11|11 E2 rhomboid 5 homolog 2 protein-coding 171584 Nss1 - - 4 42.13 cM NOD Sjogren's syndrome 1 unknown 100316802 NR_035411 ENSMUSG00000080459 Mir669g Mirn669g|mir-669g|mmu-mir-669g - 2 A1|2 8.22 cM microRNA 669g ncRNA 98034 C86415 - - - expressed sequence C86415 unknown 102467497 n-TCgca26 n-Tc26 - 6 B2.3|6 nuclear encoded tRNA cysteine 26 (anticodon GCA) tRNA 105246734 XR_878616 Gm41976 - - 1 G3|1 predicted gene, 41976 ncRNA 105245858 XR_874959 Gm41247 - - 14 E4|14 predicted gene, 41247 ncRNA 100041714 Gm20884 - - Y|Y predicted gene, 20884 protein-coding 100042180 NM_001100617 Gm11353 - - 13|13 A3.1 ribosomal protein S8 pseudogene pseudo 102632740 XR_390993 Gm30734 - - 4 E2|4 predicted gene, 30734 ncRNA 666968 Gm8389 EG666968 - X|X F3 predicted gene 8389 pseudo 78581 Mm.176347 NM_030132 ENSMUSG00000022313 Utp23 1700010I21Rik|AI662478|BB238373|D530033C11Rik - 15|15 C UTP23 small subunit processome component protein-coding 228550 Mm.65337 NM_146125 ENSMUSG00000027296 Itpka - - 2|2 E5 inositol 1,4,5-trisphosphate 3-kinase A protein-coding 66108 Mm.29939 NM_025358 ENSMUSG00000000399 Ndufa9 1010001N11Rik - 6|6 F3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 protein-coding 19805 Rn5s-ps1 - - 8|8 E1 5S RNA, pseudogene 1 pseudo 61388 D5Mit131 - - 5 26.83 cM DNA segment, Chr 5, Massachusetts Institute of Technology 131 unknown 108168607 XM_017318814 LOC108168607 - - Y B Y-linked testis-specific protein 1-like protein-coding 667180 Mm.469877 NM_001104634 ENSMUSG00000094145 Vmn2r20 EG667180 - 6|6 F2 vomeronasal 2, receptor 20 protein-coding 111412 Emv57 Emv-57 - - endogenous ecotropic MuLV 57 other 17117 Mm.2787 NM_008537 ENSMUSG00000022244 Amacr Macr1 - 15|15 A1 alpha-methylacyl-CoA racemase protein-coding 54195 Mm.9445 NM_017469 ENSMUSG00000028005 Gucy1b1 GC-S-beta-1|GCbeta1|Gucy1b3 - 3|3 E3 guanylate cyclase 1, soluble, beta 1 protein-coding 102634451 Ndufab1-ps Gm17257 - 7 D2|7 45.65 cM NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex 1, pseudogene pseudo 74511 Mm.439963 NM_028977 ENSMUSG00000039883 Lrrc17 37kDa|4833425M04Rik|6130400C22Rik|P37nb - 5|5 A3 leucine rich repeat containing 17 protein-coding 71907 Mm.326723 NM_027997 ENSMUSG00000058260 Serpina9 2310014L03Rik|AW049635|Centerin - 12|12 E serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 protein-coding 105245126 XR_871565 Gm40620 - - 10 A4|10 predicted gene, 40620 ncRNA 22133 TTg(6;17)1N TTg1N - - reciprocal translocation, transgene elicited, Chr 6 and 17, NIH 1 other 100041354 Mm.422721 NM_001122678 ENSMUSG00000079423 Gm3286 - - 5 E3|5 predicted gene 3286 protein-coding 668559 Gm9242 EG668559 - 16|16 C4 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 102638039 XR_383573 Gm34703 - - 14 D2|14 predicted gene, 34703 ncRNA 20849 Mm.1550 NM_011487 ENSMUSG00000062939 Stat4 - - 1 C1.1|1 26.67 cM signal transducer and activator of transcription 4 protein-coding 102638575 Gm35108 - - Y|Y predicted gene, 35108 pseudo 71235 Mm.61253 NR_045159 ENSMUSG00000085928 4933427I22Rik - - 4|4 D3 RIKEN cDNA 4933427I22 gene ncRNA 100040344 Gm15033 - - X|X A5 small nuclear ribonucleoprotein B pseudogene pseudo 52298 D8Ertd323e - - - DNA segment, Chr 8, ERATO Doi 323, expressed unknown 359884 DXMgc33 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 33 unknown 75571 Mm.443291 NM_029343 ENSMUSG00000021590 Spata9 1700030K01Rik|4930599C08Rik|A930023H06Rik - 13|13 C1 spermatogenesis associated 9 protein-coding 16890 Mm.158548 NM_010719 ENSMUSG00000003123 Lipe 4933403G17Rik|HSL - 7 A3|7 13.78 cM lipase, hormone sensitive protein-coding 100040581 Gm12817 - - 4|4 D1 predicted gene 12817 pseudo 67490 Mm.226295 NM_026194 ENSMUSG00000040359 Ufl1 1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776 - 4|4 A3 UFM1 specific ligase 1 protein-coding 14566 Mm.9714 NM_008110 ENSMUSG00000018238 Gdf9 Gdf-9 - 11 B1.3|11 31.94 cM growth differentiation factor 9 protein-coding 217827 Mm.224076 NM_183155 ENSMUSG00000021179 Nrde2 6720454P05Rik - 12|12 E nrde-2 necessary for RNA interference, domain containing protein-coding 100039732 Gm20813 - - Y|Y predicted gene, 20813 protein-coding 320514 Mm.440697 A430028G04Rik - - 10|10 D2 RIKEN cDNA A430028G04 gene protein-coding 623503 Mm.471593 NM_001101647 ENSMUSG00000090550 Prlh EG623503 - 1|1 D prolactin releasing hormone protein-coding 110120561 LOC110120561 - - - VISTA enhancer mm1525 biological-region 100036342 Sbcf BCF - 7 17.09 cM sperm beat cross frequency unknown 382089 Mm.92244 NM_001037907 ENSMUSG00000047897 Ripply2 C030002E08Rik|Gm1122 - 9|9 E3.1 ripply transcriptional repressor 2 protein-coding 13612 Mm.125580 NM_010103 ENSMUSG00000034488 Edil3 Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc - 13|13 C3 EGF-like repeats and discoidin I-like domains 3 protein-coding 100417772 Gm18816 - - 11|11 A3.1 vacuolar protein sorting 29 pseudogene pseudo 102636130 Mm.124702 XR_375032 Gm14061 Gm39946 - 2 F3|2 68.43 cM predicted gene 14061 ncRNA 20972 Mm.230301 NM_009303 ENSMUSG00000022415 Syngr1 R75468|Syngr1b|p29 - 15|15 E1 synaptogyrin 1 protein-coding 626058 Mm.31556 NM_001177359 E330020D12Rik EG626058|F430003O07Rik|Gm6648 - 1|1 G3 Riken cDNA E330020D12 gene ncRNA 227618 Mm.275228 NM_146117 ENSMUSG00000026961 Lrrc26 - - 2|2 A3 leucine rich repeat containing 26 protein-coding 211468 Mm.399068 NM_001031811 ENSMUSG00000035580 Kcnh8 C130090D05Rik|ELK|ELK1|ELK3|Kv12.1 - 17|17 C potassium voltage-gated channel, subfamily H (eag-related), member 8 protein-coding 74914 Mm.159368 NM_001162865 ENSMUSG00000039555 Cylc2 4930488P18Rik - 4|4 B1 cylicin, basic protein of sperm head cytoskeleton 2 protein-coding 102635934 XR_378421 Gm33145 - - 7 E3|7 predicted gene, 33145 ncRNA 100043498 Gm4478 - - 10 D2|10 ribosomal protein L21 pseudogene pseudo 102636707 LOC102636707 - - 10 C2 putative 60S ribosomal protein L37a pseudo 226090 Mm.267131 NM_001081213 ENSMUSG00000046324 Ermp1 D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815 - 19 C1|19 24.17 cM endoplasmic reticulum metallopeptidase 1 protein-coding 623114 Gm6394 EG623114 - 3|3 D ribosomal protein S11 pseudogene pseudo 11450 Mm.3969 NM_009605 ENSMUSG00000022878 Adipoq 30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1 - 16 B1|16 13.96 cM adiponectin, C1Q and collagen domain containing protein-coding 100042698 XM_011243935 Gm3973 - - 12|12 A1.2 predicted gene 3973 protein-coding 101055814 LOC101055814 - - - uncharacterized LOC101055814 protein-coding 232566 Mm.209147 NM_001113424 ENSMUSG00000068250 Amn1 5830467E07Rik|A230083D09|C730024G19Rik - 6|6 G3 antagonist of mitotic exit network 1 protein-coding 670550 Mm.379775 NM_001126323 ENSMUSG00000078256 Gm11565 - - 11|11 D predicted gene 11565 protein-coding 108483 Ms97 MMS97 - - minisatellites detected by probe MMS97 other 105246153 XR_876225 Gm41488 - - 16 C3.3|16 predicted gene, 41488 ncRNA 75288 Mm.78738 NM_029238 ENSMUSG00000021852 Slc35f4 4930550L21Rik - 14|14 C1 solute carrier family 35, member F4 protein-coding 23893 Mm.25760 NM_011825 ENSMUSG00000050069 Grem2 Gremlin2|Prdc - 1|1 H3 gremlin 2, DAN family BMP antagonist protein-coding 116750 Cocrb5 - - - cocaine related behavior 5 unknown 230861 Mm.268903 NM_172703 ENSMUSG00000028760 Eif4g3 1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8 - 4|4 D3 eukaryotic translation initiation factor 4 gamma, 3 protein-coding 100047482 Pitpnm2os2 Gm16338 - 5|5 phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 2 ncRNA 668349 Gm9119 EG668349 - X|X D predicted pseudogene 9119 protein-coding 53099 FDBC8-1 - - - DNA segment, FDBC8-1 unknown 11740 Mm.371544 NM_007451 ENSMUSG00000016319 Slc25a5 Ant2 - X A3.3|X 21.2 cM solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 protein-coding 20384 Mm.43331 NM_009159 ENSMUSG00000021134 Srsf5 Sfrs5 - 12|12 C3 serine/arginine-rich splicing factor 5 protein-coding 27527 B521M19S - - - DNA segment, B521M19S unknown 552877 Mm.399378 LOC552877 - - - uncharacterized LOC552877 unknown 102638165 Mm.406622 XR_388953 ENSMUSG00000085074 Gm11494 - - 11 C|11 54.84 cM predicted gene 11494 ncRNA 102633081 Mm.409388 NR_132431 Gm12610 ANRIL|Gm12609 - 4 C4|4 42.15 cM predicted gene 12610 ncRNA 258660 Mm.377623 NM_146666 ENSMUSG00000047716 Olfr736 MOR106-5 - 14|14 C1 olfactory receptor 736 protein-coding 100035717 Ses1a Ses1 - - salmonella enteritidis susceptibility 1a unknown 105244214 XR_866496 Gm39862 - - 2 C3|2 predicted gene, 39862 ncRNA 53906 Mm.36777 NM_025308 ENSMUSG00000046804 Phgr1 1810007E14Rik|AA238765 - 2 E5|2 59.46 cM proline/histidine/glycine-rich 1 protein-coding 78553 Mm.23370 E130118H10Rik - - 5|5 RIKEN cDNA E130118H10 gene unknown 102467619 n-TVaac7 n-Tv7 - 11 B1.2|11 nuclear encoded tRNA valine 7 (anticodon AAC) tRNA 102634939 Gm28789 - - Y|Y predicted gene 28789 ncRNA 53086 M-10625 - - - DNA segment, M-10625 unknown 100035768 Im7 LCH18 - 18 19.29 cM immunoregulatory 7 unknown 77850 Mm.407697 B830007D08Rik - - 9|9 RIKEN cDNA B830007D08 gene protein-coding 100041952 Mm.465152 NM_001177528 ENSMUSG00000063206 Defa34 Gm15315 - 8 A2|8 defensin, alpha, 34 protein-coding 105245613 Mm.394950 XR_873877 Gm41043 - - 13 D1|13 predicted gene, 41043 ncRNA 62835 D12Mit236 - - 12 21.04 cM DNA segment, Chr 12, Massachusetts Institute of Technology 236 unknown 434197 NM_001013811 ENSMUSG00000074071 Fam169b EG434197 - 7 C|7 family with sequence similarity 169, member B protein-coding 723930 NR_029900 ENSMUSG00000065501 Mir335 Mirn335|mir-335|mmu-mir-335 - 6|6 A3.3 microRNA 335 ncRNA 102632093 XR_866642 Gm30258 - - 2 E3|2 predicted gene, 30258 ncRNA 442811 9030223M17Rik - - - RIKEN cDNA 9030223M17 gene protein-coding 69885 Mm.141592 NM_001081099 ENSMUSG00000078521 Aunip 2610002D18Rik|Clhc1 - 4|4 D3 aurora kinase A and ninein interacting protein protein-coding 105243200 Gm39186 - - 8|8 predicted gene, 39186 ncRNA 105244373 XR_867027 Gm39994 - - 2 H3|2 predicted gene, 39994 ncRNA 108805058 LOC108805058 - - 5 F Gfi1 -35 kb enhancer biological-region 102634827 XR_375892 Gm38468 - - 3 F2.2|3 predicted gene, 38468 ncRNA 75297 Mm.416945 4930554N03Rik - - X|X RIKEN cDNA 4930554N03 gene protein-coding 100040443 Gm2774 Gm18424 - 9|9 F4 autophagy-related 4B pseudogene pseudo 100503392 Mm.439920 NR_152247 4833438C02Rik AI837757 - 19|19 C3 RIKEN cDNA 4833438C02 gene ncRNA 102467303 n-TEttc1 n-Te21 - 1 B|1 nuclear encoded tRNA glutamic acid 1 (anticodon TTC) tRNA 100418386 Gm19176 - - 12|12 C2 predicted gene, 19176 pseudo 624772 Mm.288508 LOC624772 - - 2|2 D uncharacterized LOC624772 protein-coding 13266 Del(10)9H Del9H - - deletion, Chr 10, Harwell 9 other 102636351 Astx4b Gm14956 - X|X 49.81 cM amplified spermatogenic transcripts X encoded 4B protein-coding 108168815 XR_001783549 LOC108168815 - - 2 H3 uncharacterized LOC108168815 ncRNA 403342 C130015C19 - - - uncharacterized LOC403342 unknown 723862 NR_029913 ENSMUSG00000105849 Mir409 Mirn409|mir-409|mmu-mir-409 - 12 F1|12 microRNA 409 ncRNA 66915 Mm.30179 NM_001163425 ENSMUSG00000073616 Cops9 1110002M09Rik|Myeov2 - 1|1 D COP9 signalosome subunit 9 protein-coding 100861870 Mm.461230 NR_078345 ENSMUSG00000108660 Gm21284 - - 6 C3|6 predicted gene, 21284 ncRNA 100418304 Gm11875 - - 4|4 A3 predicted gene 11875 pseudo 67456 Mm.59812 NM_026168 ENSMUSG00000030304 Ergic2 1200009B18Rik|4930572C01Rik|AA408438|Ptx1 - 6|6 G3 ERGIC and golgi 2 protein-coding 269513 Mm.317473 NM_172987 ENSMUSG00000055761 Nkain3 C530048M05|E130310K16Rik - 4|4 A3 Na+/K+ transporting ATPase interacting 3 protein-coding 72185 Mm.27925 NM_028146 ENSMUSG00000031970 Dbndd1 2810427I04Rik|D8Ertd590e - 8 E1|8 72.1 cM dysbindin (dystrobrevin binding protein 1) domain containing 1 protein-coding 27986 D3Wsu79e - - 3 33.76 cM DNA segment, Chr 3, Wayne State University 79, expressed unknown 61514 D8Mit130 - - 8 33.88 cM DNA segment, Chr 8, Massachusetts Institute of Technology 130 unknown 100042277 Mm.297496 XR_375791 Gm3764 100042271|Gm3759 - 3 F1|3 predicted gene 3764 unknown 12497 Mm.275524 NM_172117 ENSMUSG00000033068 Entpd6 2700026H11Rik|Cd39l2|NTPDase-6 - 2|2 G3 ectonucleoside triphosphate diphosphohydrolase 6 protein-coding 102638461 XR_870077 Gm26793 - - 7 F5|7 predicted gene, 26793 ncRNA 117006 Pitm1 - - 2 34.9 cM prion incubation time 1 unknown 108167345 XR_881265 Gm45952 - - 4 B1|4 predicted gene, 45952 ncRNA 104165 Met2 Met-2 - - methyltransferase 2 protein-coding 217219 Mm.259924 NM_199200 ENSMUSG00000034685 Fam171a2 - - 11|11 D family with sequence similarity 171, member A2 protein-coding 22782 Mm.9024 NM_009579 ENSMUSG00000037434 Slc30a1 AI839647|C130040I11Rik|Znt1 - 1 H6|1 97.01 cM solute carrier family 30 (zinc transporter), member 1 protein-coding 102634010 LOC102634010 - - 2 C1.1 40S ribosomal protein S3a pseudogene pseudo 102632121 Gm30277 - - 11|11 predicted gene, 30277 ncRNA 68018 Mm.24125 NM_023420 ENSMUSG00000021669 Col4a3bp 2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP - 13|13 D1 collagen, type IV, alpha 3 (Goodpasture antigen) binding protein protein-coding 100502897 Gm12854 - - 4|4 53.1 cM predicted gene 12854 protein-coding 433771 Mm.305990 NM_001163006 ENSMUSG00000050608 Minos1 2310028O11Rik - 4|4 D3 mitochondrial inner membrane organizing system 1 protein-coding 320001 Mm.137379 NM_177057 E230015B07Rik - - 6|6 D1 RIKEN cDNA E230015B07 gene unknown 100043129 Gm4248 - - 3 F2.2|3 high mobility group nucleosomal binding domain 2 pseudogene pseudo 258758 Mm.223190 NM_146763 ENSMUSG00000058981 Olfr1406 MOR267-5 - 1|1 H3 olfactory receptor 1406 protein-coding 100379258 Mm.116713 Gm9963 - - 9 A5.3|9 predicted gene 9963 unknown 105245329 Gm40803 - - 10|10 predicted gene, 40803 ncRNA 105244484 XR_867412 Gm40085 - - 3 F1|3 predicted gene, 40085 ncRNA 546733 Gm5973 EG546733|Ppia-ps1_352.1 - 1|1 B peptidyl-prolyl cis-trans isomerase A pseudogene 1_352.1 pseudo 613262 Mm.330707 NR_015528 ENSMUSG00000074649 BC029722 - - 2 H1|2 cDNA sequence BC029722 ncRNA 60907 D8Mit79 - - 8 41.61 cM DNA segment, Chr 8, Massachusetts Institute of Technology 79 unknown 320564 Mm.461769 A530054B12Rik - - - RIKEN cDNA A530054B12 gene protein-coding 258211 Olfr383-ps1 MOR135-16P - 11|11 B4 olfactory receptor 383, pseudogene 1 pseudo 100041903 XM_001477711 LOC100041903 - - 1|1 proteinase-activated receptor 1-like protein-coding 21165 T(3;12)58H T58H - - reciprocal translocation, Chr 3 and 12, Harwell 58 other 100416292 Gm18021 - - 16|16 C3.1 ribosomal protein L5 pseudogene pseudo 269378 Mm.330692 NM_016661 ENSMUSG00000027597 Ahcy AA987153|AL024110|CuBP|SAHH - 2 H1|2 76.94 cM S-adenosylhomocysteine hydrolase protein-coding 671007 Gm9514 - - 17 A3.3|17 sorting nexin 4 pseudogene pseudo 102640435 XR_375962 Gm36498 - - 3 F2.3|3 predicted gene, 36498 ncRNA 319448 Mm.205421 NM_207636 ENSMUSG00000033487 Fndc3a 1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys - 14 D2|14 37.62 cM fibronectin type III domain containing 3A protein-coding 76884 Mm.154358 NM_133769 ENSMUSG00000020340 Cyfip2 1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168 - 11|11 B1.1 cytoplasmic FMR1 interacting protein 2 protein-coding 100040110 Gm12739 - - 4|4 C7 predicted gene 12739 pseudo 791419 Mm.317758 XR_881291 Gm12511 - - 4 B3|4 predicted gene 12511 ncRNA 102635364 XR_381895 Gm32723 - - 12 F1|12 predicted gene, 32723 ncRNA 246165 L1Md-Gf78 GF78 - - L1 repeat, Gf subfamily, member 78 other 60725 DXMit26 - - X 3.43 cM DNA segment, Chr X, Massachusetts Institute of Technology 26 unknown 105247524 Mm.452756 LOC105247524 - - - uncharacterized LOC105247524 ncRNA 61975 D8Mit317 - - 8 60.62 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 317 unknown 105242751 XR_869397 Gm38883 - - 6 F1|6 predicted gene, 38883 ncRNA 100416657 Gm18172 - - X|X E1 predicted gene, 18172 pseudo 100416190 Gm14240 - - 2|2 H1 AE binding protein 2 pseudogene pseudo 100038862 Mm.440426 NM_201405 ENSMUSG00000062638 Btnl1 Btnl3|Gm316|Gm33 - 17 B1|17 17.98 cM butyrophilin-like 1 protein-coding 14748 Mm.4721 NM_008154 ENSMUSG00000049649 Gpr3 Gpcr20|Gpcr21|Gpcr3 - 4|4 D2.3 G-protein coupled receptor 3 protein-coding 109279845 LOC109279845 - - - enhancer upstream of Epha4 biological-region 100035554 Im6 LCH12 - 12 62.22 cM immunoregulatory 6 unknown 15531 Mm.181862 NM_008306 ENSMUSG00000054008 Ndst1 1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo - 18|18 D3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 protein-coding 102638454 Mm.388886 XR_868203 Gm10570 - - 4|4 D2.2 predicted gene 10570 ncRNA 101055750 Atp5k-ps1 Atp5k-rs3 - 8|8 C3 ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 1 pseudo 21784 Mm.2854 NM_009362 ENSMUSG00000024032 Tff1 Bcei|PS2 - 17 A3.3|17 15.8 cM trefoil factor 1 protein-coding 77813 Mm.296829 A930012N16Rik C78811 - 2|2 RIKEN cDNA A930012N16 gene protein-coding 100503796 Gm19900 - - 7 A3|7 10.18 cM sepiapterin reductase-like pseudo 73797 4930405N21Rik - - 5|5 F RIKEN cDNA 4930405N21 gene protein-coding 11816 Mm.305152 NM_009696 ENSMUSG00000002985 Apoe AI255918|Apo-E - 7 A3|7 9.94 cM apolipoprotein E protein-coding 112155 Faq9 - - 15 37.85 cM fluctuating asymmetry QTL 9 unknown 22630 Mm.289630 NM_011739 ENSMUSG00000076432 Ywhaq 2700028P07Rik|AA409740|AU021156|R74690 - 12|12 A1.3 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 105244997 Gm40512 - - 9|9 predicted gene, 40512 ncRNA 666214 NM_001358038 1700049E17Rik1 1700049E17Rik - 14 B|14 RIKEN cDNA 1700049E17 gene, gene 1 protein-coding 108101 Mm.157591 NM_153795 ENSMUSG00000024965 Fermt3 C79673|Kindlin3 - 19|19 A fermitin family member 3 protein-coding 70551 Mm.271988 NM_028651 ENSMUSG00000041594 Tmtc4 4930403J22Rik|5730419O14Rik - 14|14 E5 transmembrane and tetratricopeptide repeat containing 4 protein-coding 258008 Mm.377327 NM_001012269 ENSMUSG00000095030 Olfr1513 MOR223-10|MOR223-7P - 14|14 C2 olfactory receptor 1513 protein-coding 18952 Mm.2214 NM_011129 ENSMUSG00000020486 Sept4 ARTS|Bh5|Pnutl2 - 11|11 C septin 4 protein-coding 78118 Mm.107753 NM_183131 ENSMUSG00000045989 4930451I11Rik - - 7|7 F3 RIKEN cDNA 4930451I11 gene protein-coding 21101 T(16C3-4;17A2)65Dn T(16;17)65Dn|T65Dn|Ts65Dn - - reciprocal translocation, Chr 16, cytogenetic band C3-4; and Chr 17, cytogenetic band A2, Davisson 65 other 666711 Gm8249 EG666711 - 10|10 C1 predicted gene 8249 pseudo 19559 Rb(4.6)5Mpl Rb5Mpl - - Robertsonian translocation, Chr 4 and 6, Montpellier 5 other 102637596 Platr13 Gm12139 - 11|11 24.5 cM pluripotency associated transcript 13 ncRNA 70354 Mm.138091 NM_133725 ENSMUSG00000035093 Secisbp2l 3110001I20Rik|AI504340|C630011I23 - 2|2 F1 SECIS binding protein 2-like protein-coding 100416709 Gm18209 - - 8|8 B3.3 zinc finger protein 709 pseudogene pseudo 102635015 XR_384396 Gm32457 - - 15 F1|15 predicted gene, 32457 ncRNA 100416024 Gm17877 - - 3|3 A1 EST AA881470 pseudogene pseudo 105245590 XR_873812 Gm41022 - - 13 C3|13 predicted gene, 41022 ncRNA 97712 C78671 - - - expressed sequence C78671 unknown 229571 Mm.331194 NM_001034860 ENSMUSG00000096879 Gm4858 EG229571 - 3 F1|3 predicted gene 4858 protein-coding 112024 Bw11 - - - body weight QTL 11 unknown 23908 Mm.12863 NM_011828 ENSMUSG00000040151 Hs2st1 2OST|AW214369|Hs2st|mKIAA0448 - 3|3 H2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 383225 Gm5225 - - 17|17 A3.3 peroxiredoxin 2 pseudogene pseudo 101055968 LOC101055968 - - X A4 60S ribosomal protein L27 pseudogene pseudo 241770 Mm.330760 NM_183023 ENSMUSG00000035226 Rims4 6530406L02|Rim4 - 2|2 H3 regulating synaptic membrane exocytosis 4 protein-coding 780799 Mm.435577 Ighv7-1 F101b9-5H|Gm16698|IGHV|Igh|Igh-V - 12|12 F1 immunoglobulin heavy variable 7-1 pseudo 100035795 Gluchos1 - - 13 65.32 cM glucose homeostasis QTL 1 unknown 107855 Tel11p - - - telomeric sequence, Chr 11, centromere end protein-coding 78033 Mm.243856 4930535G08Rik - - 1|1 RIKEN cDNA 4930535G08 gene protein-coding 62720 D18Mit130 - - 18 59.05 cM DNA segment, Chr 18, Massachusetts Institute of Technology 130 unknown 102637222 Gm34091 Gm43632 - 6 F3|6 predicted gene, 34091 pseudo 244550 Mm.334654 NM_001013384 ENSMUSG00000012889 Podnl1 5832418A03Rik|Gm506 - 8|8 C2 podocan-like 1 protein-coding 102632974 XR_381633 Gm30915 - - 12 C1|12 predicted gene, 30915 ncRNA 16012 Mm.358609 NM_008344 ENSMUSG00000023046 Igfbp6 IGFBP-6 - 15|15 F2 insulin-like growth factor binding protein 6 protein-coding 109466 Cms2 - - - resistance to Coccidioides immitis 2 unknown 11776 Mm.27082 NM_007460 ENSMUSG00000020198 Ap3d1 AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha - 10 C1|10 39.72 cM adaptor-related protein complex 3, delta 1 subunit protein-coding 60867 D6Mit58 - - 6 73.86 cM DNA segment, Chr 6, Massachusetts Institute of Technology 58 unknown 640506 Ighv8-5 EG640506|Gm7297 - 12|12 F2 immunoglobulin heavy variable V8-5 other 668090 Gm8971 EG668090 - 14|14 C3 predicted gene 8971 pseudo 108168500 n-TPtgg3 Trnap-ugg|n-Tp13 - X A1.1|X nuclear encoded tRNA proline 3 (anticodon TGG) tRNA 108168676 XR_001782936 LOC108168676 - - - uncharacterized LOC108168676 ncRNA 100101806 Mm.471968 NM_001100110 ENSMUSG00000079108 Srp54c E330029E12Rik - 12|12 C1 signal recognition particle 54C protein-coding 108169105 XM_017321268 LOC108169105 - - 5 A3 cadherin-related family member 4-like protein-coding 233752 Mm.83037 NM_173767 ENSMUSG00000048782 Insc 3830422K02Rik|C730020D23 - 7|7 F1 INSC spindle orientation adaptor protein protein-coding 103935 Eh - - - hairy ears unknown 628403 Vmn2r-ps56 EG628403|Gm6875 - 7|7 B3 vomeronasal 2, receptor, pseudogene 56 pseudo 545790 Gm5870 EG545790 - 5|5 E5 Sec61 beta subunit pseudogene pseudo 66745 Mm.158128 NM_025741 ENSMUSG00000024815 Trpd52l3 4931412G03Rik - 19|19 C1 tumor protein D52-like 3 protein-coding 320044 Mm.402982 9530037G02Rik - - 11|11 RIKEN cDNA 9530037G02 gene protein-coding 320712 Mm.209236 NM_178790 ENSMUSG00000035258 Abi3bp 5033411B22Rik|AI506287|BG172926|D930038M13Rik|TARSH|eratin - 16|16 C1.1 ABI gene family, member 3 (NESH) binding protein protein-coding 21763 Mm.102407 NM_198292 ENSMUSG00000040548 Tex2 4930568E07Rik|AI553404|Def-5|Taz4 - 11 E1|11 69.46 cM testis expressed gene 2 protein-coding 53870 Mm.321671 NM_017383 ENSMUSG00000030092 Cntn6 NB-3 - 6|6 E1 contactin 6 protein-coding 103988 Mm.220358 NM_010292 ENSMUSG00000041798 Gck GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2 - 11 A1|11 3.88 cM glucokinase protein-coding 51900 D2Ertd329e - - 2 43.56 cM DNA segment, Chr 2, ERATO Doi 329, expressed unknown 75536 Mm.159535 Clnkos 1700021O21Rik - 5|5 cytokine-dependent hematopoietic cell linker, opposite strand unknown 102633344 Gm31192 - - 14|14 predicted gene, 31192 pseudo 73166 Mm.489613 NM_028454 ENSMUSG00000024799 Tm7sf2 3110041O18Rik|ANG1|C14SR|Dhcr14 - 19|19 A transmembrane 7 superfamily member 2 protein-coding 62912 D10Mit199 - - 10 37.8 cM DNA segment, Chr 10, Massachusetts Institute of Technology 199 unknown 67579 Mm.339792 NM_026252 ENSMUSG00000020300 Cpeb4 Cpe-bp4|Cpeb-4|mCPEB-4 - 11|11 A4 cytoplasmic polyadenylation element binding protein 4 protein-coding 17380 Mm.296022 NM_008604 ENSMUSG00000027820 Mme 6030454K05Rik|C85356|CALLA|CD10|NEP|SFE - 3 E1|3 29.97 cM membrane metallo endopeptidase protein-coding 102467282 n-TCgca36 n-Tc36 - 6 B2.3|6 nuclear encoded tRNA cysteine 36 (anticodon GCA) tRNA 108521 Ms13-30 Ms13-Hf14 - - minisatellite 13-30 detected by M13 phage probe other 320938 Mm.276381 NM_177296 ENSMUSG00000012535 Tnpo3 5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133 - 6 A3.3|6 12.36 cM transportin 3 protein-coding 102635895 Mm.261762 XR_382268 ENSMUSG00000114192 Gm33115 - - 13 A4|13 predicted gene, 33115 ncRNA 110120415 LOC110120415 - - - VISTA enhancer mm243 biological-region 105246546 Gm41820 - - 19|19 predicted gene, 41820 ncRNA 102635576 XR_386214 Gm32870 - - 18 C|18 predicted gene, 32870 ncRNA 20784 Srcs4 - - - v-src suppressed transcript 4 protein-coding 320700 Mm.396529 NM_001331193 ENSMUSG00000090622 A930033H14Rik - - 10|10 B5.3 RIKEN cDNA A930033H14 gene protein-coding 100306874 Mm.407654 B430218F22Rik - - 13|13 RIKEN cDNA B430218F22 gene unknown 627860 Mm.486636 NR_033515 Cyp2d37-ps EG627860|Gm6800 - 15|15 E1 cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene pseudo 93915 D16Jhu53 312L5.T7 - - DNA segment, Chr 16, Johns Hopkins University 53 unknown 100503154 Gm19579 - - 4|4 26.12 cM predicted gene, 19579 ncRNA 668597 Ighv1-85 EG668597|Gm9261 - 12|12 F2 immunoglobulin heavy variable 1-85 other 229487 Mm.52275 NM_144896 ENSMUSG00000028085 Gatb 9430026F02Rik|Pet112|Pet112l - 3|3 F1 glutamyl-tRNA(Gln) amidotransferase, subunit B protein-coding 66626 Mm.157648 NM_025670 ENSMUSG00000004071 Cdip1 2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP - 16 A1|16 2.47 cM cell death inducing Trp53 target 1 protein-coding 104110 Mm.287010 NM_080435 ENSMUSG00000022220 Adcy4 mKIAA4004 - 14|14 C3 adenylate cyclase 4 protein-coding 105244543 XR_867605 Gm40136 - - 3 G1|3 predicted gene, 40136 ncRNA 102631629 Gm21843 - - Y|Y predicted gene, 21843 protein-coding 100217423 NR_028523 Snord19 MBII-108 - 14 B|14 small nucleolar RNA, C/D box 19 snoRNA 19943 Mm.379002 NM_009081 ENSMUSG00000030432 Rpl28 D7Wsu21e - 7 A1|7 2.77 cM ribosomal protein L28 protein-coding 52912 Mm.276815 D10Bwg0424e - - 10 39.72 cM DNA segment, Chr 10, Brigham & Women's Genetics 0424 expressed unknown 69410 Mm.52583 1700025O18Rik - - 13|13 RIKEN cDNA 1700025O18 gene ncRNA 666413 Gm8088 EG666413 - 3|3 C predicted gene 8088 pseudo 116918 D13Jde5 - - - DNA segment, Chr 13, Jan Deussing 5 unknown 80911 Mm.291503 NM_030721 ENSMUSG00000029098 Acox3 BI685180|EST-s59|PCOX - 5|5 B3 acyl-Coenzyme A oxidase 3, pristanoyl protein-coding 105242906 XR_881945 Gm12763 - - 7 B1|7 19.36 cM predicted gene 12763 ncRNA 60894 D8Mit42 - - 8 74.46 cM DNA segment, Chr 8, Massachusetts Institute of Technology 42 unknown 194224 Gm13100 - - 4|4 E1 oogenesin 2 pseudogene pseudo 492913 Nidd3k - - - Nidd3 on KK-A unknown 69577 Mm.23670 NM_027123 ENSMUSG00000021532 Fastkd3 2310010B21Rik|AW048587 - 13|13 B3 FAST kinase domains 3 protein-coding 258050 Olfr754-ps1 MOR121-2P - 17|17 B1 olfactory receptor 754, pseudogene 1 pseudo 100504425 Mm.384143 NR_130128 ENSMUSG00000110218 Gm20219 Tincr - 17 D|17 29.39 cM predicted gene, 20219 ncRNA 102635714 LOC102635714 - - X A1.1 oxidative stress-responsive serine-rich protein 1 pseudogene pseudo 12515 Mm.74745 NM_001033122 ENSMUSG00000030156 Cd69 5830438K24Rik|AI452015|AIM|VEA - 6 F3|6 63.21 cM CD69 antigen protein-coding 100312518 Vmn1r-ps138 - - 16 A1|16 1.99 cM vomeronasal 1 receptor, pseudogene 138 pseudo 66642 Mm.45193 NM_025680 ENSMUSG00000027649 Ctnnbl1 5730471K09Rik|NAP|NYD-SP19|P14L - 2 H1|2 78.4 cM catenin, beta like 1 protein-coding 66075 Mm.21501 NM_025336 ENSMUSG00000053768 Chchd3 0610041L09Rik|1700039J09Rik|AW558177 - 6|6 A3.3 coiled-coil-helix-coiled-coil-helix domain containing 3 protein-coding 108167944 n-TQttg6 Trnaq-uug|n-Tq16 - 11|11 D nuclear encoded tRNA glutamine 6 (anticodon TTG) tRNA 105247196 XR_881545 Gm42335 - - 4 D3|4 predicted gene, 42335 ncRNA 56296 Mm.141324 NM_019872 ENSMUSG00000028610 Dmrtb1 Dmrt6|Prp13 - 4|4 C7 DMRT-like family B with proline-rich C-terminal, 1 protein-coding 244234 Mm.85125 NM_175533 ENSMUSG00000054672 5830411N06Rik Scart2 - 7|7 F4 RIKEN cDNA 5830411N06 gene protein-coding 319780 D030002E05Rik - - 11|11 RIKEN cDNA D030002E05 gene protein-coding 64657 Mm.216250 NM_183086 ENSMUSG00000034729 Mrps10 1110038B19Rik|AW743084|Rpms10 - 17|17 C mitochondrial ribosomal protein S10 protein-coding 112068 Melm2 - - 1 81.08 cM melanoma modifier 2 unknown 102640336 XR_382827 Gm36427 - - 13 D1|13 predicted gene, 36427 ncRNA 239017 Mm.318302 NM_001081130 ENSMUSG00000021913 Ogdhl - - 14|14 B oxoglutarate dehydrogenase-like protein-coding 114231 Eae20 - - 3 12.19 cM experimental allergic encephalomyelitis susceptibility 20 unknown 114274 Manz10 QTL-C14.1 - - mandible size 10 unknown 100124335 Traj53 Gm16772 - 14|14 C2 T cell receptor alpha joining 53 other 435316 Gm5656 EG435316 - 12|12 E serine (or cysteine) preptidase inhibitor, clade A, member 1B pseudogene pseudo 100503923 XM_017318889 LOC100503923 - - - proteinase-activated receptor 1-like protein-coding 111470 Xmmv2 Env-2|Xmmv-2 - - xenotropic-MCF leukemia virus 2 other 108168778 XR_001783422 Gm46754 - - 2 E1|2 predicted gene, 46754 ncRNA 102632326 Gm21350 - - Y|Y predicted gene, 21350 protein-coding 68815 Mm.238034 NM_133700 ENSMUSG00000038187 Btbd10 1110056N09Rik|Gmrp1 - 7|7 F1 BTB (POZ) domain containing 10 protein-coding 12476 Mm.30246 NM_009842 ENSMUSG00000025510 Cd151 PETA-3|SFA-1|Tspan24 - 7 F5|7 86.82 cM CD151 antigen protein-coding 102634872 XR_874544 LOC102634872 - - 14 B uncharacterized LOC102634872 ncRNA 328643 Mm.40539 NM_182636 ENSMUSG00000046613 Vwa5b2 BB182430|EG328644|Gm1738|Gm931 - 16|16 B1 von Willebrand factor A domain containing 5B2 protein-coding 667490 Gm8663 EG667490 - 19 C2|19 mortality factor 4 like 1 pseudogene pseudo 11757 Mm.29821 NM_007452 ENSMUSG00000024997 Prdx3 AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM - 19 D3|19 56.52 cM peroxiredoxin 3 protein-coding 102632049 XR_385059 Gm30224 - - 16 C4|16 predicted gene, 30224 ncRNA 62361 D10Mit281 - - 10 8.39 cM DNA Segment, Chr 10 Massachusetts Institute of Technology 281 unknown 105244293 XR_866734 Gm39932 - - 2 F1|2 predicted gene, 39932 ncRNA 777677 Ighd2-4 Gm16785 - 12|12 F1 immunoglobulin heavy diversity 2-4 other 544881 Mm.327146 NM_001033788 ENSMUSG00000079031 BB287469 - - 12 D2|12 expressed sequence BB287469 protein-coding 114168 Etohcta2 - - - ethanol conditioned taste aversion 2 unknown 98506 D1Mgi58 AL033307 - - DNA Segment, Chr 1, Mouse Genome Informatics 58 unknown 668063 Gm8956 EG668063 - 6|6 G1 predicted gene 8956 pseudo 102631737 Gm29495 - - Y|Y predicted gene 29495 pseudo 667899 Igkv6-13 Igk-V19-13 - 6|6 C1 immunoglobulin kappa variable 6-13 other 105244087 XR_865986 Gm39761 - - 2 A3|2 predicted gene, 39761 ncRNA 100502801 Gm19383 - - 5|5 75.54 cM predicted gene, 19383 ncRNA 493162 Splq6 - - - spleen weight QTL 6 unknown 102632001 XR_389710 Gm30184 - - 3 B|3 predicted gene, 30184 ncRNA 100042040 Gm3635 - - 8 E1|8 predicted gene 3635 pseudo 208990 Mm.29444 NM_153288 ENSMUSG00000044034 Npb PPL7|mPPL7 - 11|11 E2 neuropeptide B protein-coding 100039810 Mm.464910 NM_001160144 ENSMUSG00000095634 Gm20816 - - Y|Y C3 predicted gene, 20816 protein-coding 675165 Gm9637 - - 14|14 A3 predicted gene 9637 protein-coding 102632708 XR_381867 Gm15523 - - 12 E|12 52.91 cM predicted gene 15523 ncRNA 12143 Mm.3962 NM_007549 ENSMUSG00000014453 Blk - - 14 D1|14 33.25 cM B lymphoid kinase protein-coding 385047 Trav6d-7 Gm1489 - 14|14 C2 T cell receptor alpha variable 6D-7 other 258226 Olfr377-ps1 MOR135-15 - 11|11 B4 olfactory receptor 377, pseudogene 1 pseudo 231672 Mm.221769 NM_172721 ENSMUSG00000032867 Fbxw8 4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29 - 5|5 F F-box and WD-40 domain protein 8 protein-coding 71297 Mm.390420 NR_110444 ENSMUSG00000086646 Platr20 5133400J02Rik - 11|11 B1.3 pluripotency associated transcript 20 ncRNA 102466797 NR_106025 ENSMUSG00000099017 Mir7058 Gm27766|mmu-mir-7058 - 7|7 F3 microRNA 7058 ncRNA 667765 Trav10 EG667765|Gm8800 - 14 C2|14 T cell receptor alpha variable 10 other 110120408 LOC110120408 - - - VISTA enhancer mm829 biological-region 13542 Mm.3400 NM_010091 ENSMUSG00000029071 Dvl1 Dvl|mKIAA4029 - 4 E2|4 87.61 cM dishevelled segment polarity protein 1 protein-coding 242607 Mm.192040 NM_146255 ENSMUSG00000008932 Slc1a7 A930031E15Rik|Eaat5 - 4|4 C7 solute carrier family 1 (glutamate transporter), member 7 protein-coding 111667 Igh-VQ52 - - - immunoglobulin heavy chain (Q52 family) other 102633030 XR_378688 ENSMUSG00000109260 Gm30954 Gm44906 - 8 A1.1|8 predicted gene, 30954 ncRNA 258456 Mm.377510 NM_146464 ENSMUSG00000075120 Olfr1196 MOR225-5 - 2|2 D olfactory receptor 1196 protein-coding 100040264 Gm20835 - - Y|Y predicted gene, 20835 protein-coding 667780 Mm.457901 NM_001177578 ENSMUSG00000096333 Gm13871 - - 4|4 C3 predicted gene 13871 protein-coding 21684 Mm.42139 NM_009348 ENSMUSG00000024979 Tectb Tctnb - 19 D2|19 51.13 cM tectorin beta protein-coding 27060 Mm.271689 NM_016921 ENSMUSG00000001750 Tcirg1 ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc - 19 A|19 3.62 cM T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 protein-coding 62250 D18Mit33 - - 18 43.49 cM DNA segment, Chr 18, Massachusetts Institute of Technology 33 unknown 442849 Mm.371861 C330019F10Rik - - - RIKEN cDNA C330019F10 gene protein-coding 20357 Mm.42015 NM_013661 ENSMUSG00000052133 Sema5b AI893641|SemG|Semag|mKIAA1445 - 16|16 B3 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B protein-coding 100885824 NR_049185 ENSMUSG00000093291 Mir299b Gm25400|mmu-mir-299b - 12|12 F1 microRNA 299b ncRNA 109850 Pctm Pcts2 - - plasmacytoma modifier protein-coding 59289 Mm.258105 NM_021609 ENSMUSG00000044534 Ackr2 AI464239|CCR10|CCR9|Ccbp2|Cmkbr9|D6 - 9|9 F4 atypical chemokine receptor 2 protein-coding 116972 Mm.188413 NM_027773 ENSMUSG00000069808 Fam57a 2310047D13Rik|4932415L08Rik|5430402E13Rik|5430420K21Rik|Wdt3 - 11|11 B5 family with sequence similarity 57, member A protein-coding 102633476 XR_379937 Gm31292 - - 9 F3|9 predicted gene, 31292 ncRNA 19474 Rb(11.13)6Tu Rb6Tu - - Robertsonian translocation, Chr 11 and 13, Tubingen 6 other 68191 Mm.398840 Taco1os 5330430P22Rik - 11|11 E1 translational activator of mitochondrially encoded cytochrome c oxidase I, opposite strand unknown 100503600 Gm19792 - - 13 B3|13 32.74 cM predicted gene, 19792 pseudo 777670 Ighd5-4 Gm17424 - 12|12 F1 immunoglobulin heavy diversity 5-4 pseudo 209630 Mm.37932 NM_172475 ENSMUSG00000026657 Frmd4a 2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294 - 2|2 A1 FERM domain containing 4A protein-coding 105243709 Mm.405465 XR_878182 Gm14809 - - X C3|X 43.35 cM predicted gene 14809 ncRNA 360095 D17Jcs49 - - - DNA segment, Chr 17, John C. Schimenti 49 unknown 171262 Mm.222634 NM_134228 ENSMUSG00000045340 Vmn1r70 V1rd2|V1rl1 - 7|7 A1 vomeronasal 1 receptor 70 protein-coding 51909 D3Ertd491e - - - DNA segment, Chr 3, ERATO Doi 491, expressed unknown 732529 Gt(pU21)107Imeg Ayu21-107|GtAyu21-107 - - gene trap 107, Institute of Molecular Embryology and Genetics unknown 68891 Mm.292848 NM_026862 ENSMUSG00000052212 Cd177 1190003K14Rik|Pdp3 - 7|7 A3 CD177 antigen protein-coding 667637 Gm8742 EG667637 - 13|13 A5 predicted gene 8742 pseudo 109834 H31 H-31 - - histocompatibility 31 protein-coding 27654 D1Dau8 - - - DNA segment, Chr 1, DA Underhill 8 unknown 109653 Bda - - - bald arthritic unknown 61107 D2Mit472 - - - DNA Segment, Chr 2 Massachusetts Institute of Technology 472 unknown 320816 Mm.260201 NM_177268 ENSMUSG00000047909 Ankrd16 2810455F06Rik|AI646698|D430029B21Rik - 2|2 A1 ankyrin repeat domain 16 protein-coding 100039328 Gm2161 - - X|X A3.1 predicted gene 2161 pseudo 17260 Mm.24001 NM_025282 ENSMUSG00000005583 Mef2c 5430401D19Rik|9930028G15Rik|AV011172|Mef2 - 13 C3|13 43.68 cM myocyte enhancer factor 2C protein-coding 211286 Mm.295289 NM_001033242 ENSMUSG00000022125 Cln5 A730075N08Rik - 14 E2.3|14 51.71 cM ceroid-lipofuscinosis, neuronal 5 protein-coding 102854 AA517478 - - - expressed sequence AA517478 unknown 81011 Mm.160376 NM_030736 ENSMUSG00000095543 Vmn1r148 V1rd14|V3R8 - 7|7 A3 vomeronasal 1 receptor 148 protein-coding 105244868 Mm.489387 XR_872690 Gm40399 - - 12 B1|12 predicted gene, 40399 ncRNA 102466240 NR_106156 ENSMUSG00000098765 Mir7685 Gm27757|mmu-mir-7685 - 2|2 H1 microRNA 7685 ncRNA 226823 Mm.209880 NM_172650 ENSMUSG00000026608 Kctd3 4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45 - 1|1 H6 potassium channel tetramerisation domain containing 3 protein-coding 66769 Mm.482908 NM_025756 ENSMUSG00000044276 4933427E11Rik - - 15|15 D3 RIKEN cDNA 4933427E11 gene ncRNA 23853 Mm.204731 NM_027185 ENSMUSG00000002257 Def6 2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6 - 17|17 A3.3 differentially expressed in FDCP 6 protein-coding 215201 Mm.289368 NM_172540 ENSMUSG00000067369 Trmt2b 4732479N06Rik - X|X E3 TRM2 tRNA methyltransferase 2B protein-coding 108356 Akev1 - - - AKXL-5 ecotropic provirus 1 other 13446 Mm.266301 NM_010069 ENSMUSG00000052301 Doc2a - - 7|7 F3 double C2, alpha protein-coding 320827 Mm.101504 NM_001163793 ENSMUSG00000036377 C530008M17Rik 2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211 - 5 C3.3|5 RIKEN cDNA C530008M17 gene protein-coding 102637973 XM_006498507 ENSMUSG00000107167 Gm34653 - - 2 B|2 predicted gene, 34653 protein-coding 14237 Mm.377080 NM_008022 ENSMUSG00000051490 Foxd4 FREAC5|Fkh2 - 19 B|19 19.86 cM forkhead box D4 protein-coding 100039634 Gm2349 - - 16|16 C3.3 ubiquitin-fold modifier conjugating enzyme 1 pseudogene pseudo 75202 Mm.227456 NM_029205 ENSMUSG00000080316 Spaca6 4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b - 17|17 A3.2 sperm acrosome associated 6 protein-coding 100043882 Gm14277 - - 2|2 H1 predicted gene 14277 protein-coding 105242944 XR_882090 Gm39015 - - 7 B5|7 predicted gene, 39015 ncRNA 227102 Mm.212846 NM_145517 ENSMUSG00000026097 Ormdl1 C730042F17Rik - 1|1 C1.1 ORM1-like 1 (S. cerevisiae) protein-coding 105247267 XR_882150 Gm42395 - - 7 C|7 predicted gene, 42395 ncRNA 114661 Mm.207081 NM_053259 ENSMUSG00000024171 Prss28 Isp1|mIsp-1 - 17 A3.3|17 12.53 cM protease, serine 28 protein-coding 69780 Mm.271819 NM_133716 ENSMUSG00000032870 Smap2 1810031K02Rik|AA408614|Smap1l - 4|4 D2.2 small ArfGAP 2 protein-coding 108168822 XR_001783592 Gm46780 - - 2 H3|2 predicted gene, 46780 ncRNA 19074 Mm.142727 NM_008920 ENSMUSG00000027073 Prg2 EMBP|MBP|mMBP|mMBP-1 - 2 D|2 49.45 cM proteoglycan 2, bone marrow protein-coding 94187 Mm.23452 NM_033327 ENSMUSG00000045333 Zfp423 Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12 - 8|8 C3 zinc finger protein 423 protein-coding 75678 Mm.390586 NM_199056 ENSMUSG00000021385 Ippk 1810043M15Rik|InsP6 - 13|13 A5 inositol 1,3,4,5,6-pentakisphosphate 2-kinase protein-coding 59026 Mm.27372 NM_021523 ENSMUSG00000025261 Huwe1 5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1 - X|X F3 HECT, UBA and WWE domain containing 1 protein-coding 402749 Mm.448178 B430316J06Rik - - 6|6 RIKEN cDNA B430316J06 gene protein-coding 432769 Mm.458849 NM_001012325 ENSMUSG00000058883 Zfp708 Rslcan11 - 13|13 B3 zinc finger protein 708 protein-coding 102634081 XR_384265 Gm31750 - - 15 E1|15 predicted gene, 31750 ncRNA 664888 Gm7389 EG664888 - 8|8 A1.1 exportin, tRNA (nuclear export receptor for tRNAs) pseudogene pseudo 100417060 Gm18391 - - 10|10 C2 B-cell CLL/lymphoma 9-like pseudogene pseudo 666493 Gm8134 EG666493 - 16|16 B1 predicted gene 8134 pseudo 272589 Mm.34483 NM_173038 ENSMUSG00000037287 Tbcel D330014K23|E130107N23Rik|Lrrc35 - 9|9 A5.1 tubulin folding cofactor E-like protein-coding 101926 AA407107 AA407132 - - expressed sequence AA407107 protein-coding 100217417 Mm.486440 NR_034051 ENSMUSG00000065336 Snora34 MBI-89 - 15 F1|15 small nucleolar RNA, H/ACA box 34 snoRNA 100034974 Mastr - - - modifier of astrocytoma unknown 75385 Mm.453551 4930597L12Rik - - 3|3 RIKEN cDNA 4930597L12 gene ncRNA 67248 Mm.30478 NM_026055 ENSMUSG00000079641 Rpl39 2810465O16Rik - X|X A3.3 ribosomal protein L39 protein-coding 319886 A430023P06Rik - - 2|2 RIKEN cDNA A430023P06 gene protein-coding 100036112 Fatpad4 - - - fat pad 4 unknown 71263 Mm.126220 NM_027741 ENSMUSG00000064036 Mro 4930507C04Rik|4933435E20Rik - 18|18 E2 maestro protein-coding 102636666 LOC102636666 - - 17 D U1 small nuclear ribonucleoprotein C pseudogene pseudo 100124690 Trbv25 - - 6|6 B1 T cell receptor beta variable 25 pseudo 78102 Mm.296832 NR_077229 ENSMUSG00000115970 8430426J06Rik - - 15|15 E1 RIKEN cDNA 8430426J06 gene ncRNA 15371 Mm.358606 NM_010445 ENSMUSG00000067438 Hmx1 Nkx5-3 - 5 B2|5 18.14 cM H6 homeobox 1 protein-coding 102641287 XR_867090 Gm38546 - - 2 H4|2 predicted gene, 38546 ncRNA 68678 Mm.33452 NM_024230 ENSMUSG00000027077 Smtnl1 1110030K22Rik|CHASM - 2|2 D smoothelin-like 1 protein-coding 105243446 XR_870886 Gm39368 - - 9 D|9 predicted gene, 39368 ncRNA 105242692 Gm38840 - - 6 C3|6 mortality factor 4-like protein 1 pseudo 109280118 LOC109280118 Mm1367 - - VISTA enhancer mm1367 biological-region 98097 T25614 - - - expressed sequence T25614 unknown 67623 Mm.278037 NM_026281 ENSMUSG00000040234 Tm7sf3 2010003B14Rik|NARP1 - 6|6 G3 transmembrane 7 superfamily member 3 protein-coding 20135 Mm.99 NM_009104 ENSMUSG00000020649 Rrm2 AA407299|R2 - 12 A1.3|12 8.5 cM ribonucleotide reductase M2 protein-coding 100036339 Dvs2 Dvs-2 - - dorsoventral vaginal septum 2 unknown 100035342 Lbn5 LBN6.1 - 6 37.96 cM long bones 5 unknown 71802 1500010C09Rik - - - RIKEN cDNA 1500010C09 gene protein-coding 13136 Mm.101591 NM_010016 ENSMUSG00000026399 Cd55 Daf|Daf-GPI|Daf1|GPI-DAF - 1 E4|1 56.89 cM CD55 molecule, decay accelerating factor for complement protein-coding 68135 Mm.289800 NM_080635 ENSMUSG00000022312 Eif3h 1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3 - 15|15 C eukaryotic translation initiation factor 3, subunit H protein-coding 108167337 XR_869892 Gm45948 - - 7 F1|7 predicted gene, 45948 ncRNA 68347 Mm.35098 NM_026686 ENSMUSG00000025731 Mettl26 0610011F06Rik - 17|17 A3.3 methyltransferase like 26 protein-coding 73648 Mm.410851 NR_045939 ENSMUSG00000099528 2410012E07Rik - - 14|14 D2 RIKEN cDNA 2410012E07 gene ncRNA 24061 Mm.482095 NM_019710 ENSMUSG00000041133 Smc1a 5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178 - X|X F3 structural maintenance of chromosomes 1A protein-coding 170743 Mm.23979 NM_133211 ENSMUSG00000044583 Tlr7 - - X|X F5 toll-like receptor 7 protein-coding 110152 Hilda - - - human interleukin in DA cells protein-coding 73075 Mm.359762 NM_028430 ENSMUSG00000078451 Ppil6 2900084F20Rik - 10|10 B2 peptidylprolyl isomerase (cyclophilin)-like 6 protein-coding 359848 DXMgc91 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 91 unknown 100417307 Gm18520 - - 17|17 B1 crumbs homolog 1 pseudogene pseudo 75290 Mm.416947 XR_001782869 4930557B15Rik - - X A2|X RIKEN cDNA 4930557B15 gene ncRNA 100312503 Vmn1r-ps57 - - 7 A1|7 7.33 cM vomeronasal 1 receptor, pseudogene 57 pseudo 102635799 XR_377679 Gm33047 - - 6 B3|6 predicted gene, 33047 ncRNA 668356 Gm9124 EG668356 - 3|3 F2.1 predicted pseudogene 9124 pseudo 632687 Mm.121570 NM_172568 ENSMUSG00000078627 March10 4933417C16Rik|AV039223|Rnf190 - 11|11 E1 membrane-associated ring finger (C3HC4) 10 protein-coding 105243919 Gm39636 - - 1|1 predicted gene, 39636 ncRNA 21858 Mm.206505 NM_011594 ENSMUSG00000017466 Timp2 D11Bwg1104e|Timp-2 - 11 E2|11 83.09 cM tissue inhibitor of metalloproteinase 2 protein-coding 100035450 Imab - - - intermale aggressive behavior unknown 241950 Mm.32171 NM_001008502 ENSMUSG00000051444 Bbs12 Gm1805|Gm407|Gm721 - 3|3 B Bardet-Biedl syndrome 12 (human) protein-coding 231832 Mm.482655 NM_144914 ENSMUSG00000036687 Tmem184a Sdmg1 - 5|5 G2 transmembrane protein 184a protein-coding 70862 Mm.330943 NM_027583 ENSMUSG00000039335 Spata16 4921511F01Rik|4930503K02Rik|Nyd-sp12 - 3|3 A3 spermatogenesis associated 16 protein-coding 668566 Gm9247 EG668566 - 14|14 E2.1 L-lactate dehydrogenase A pseudogene pseudo 232801 Mm.258061 NM_001081239 ENSMUSG00000070873 Lilra5 E030017K20|EG232801|Gm4878|Lilrc1 - 7|7 A1 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5 protein-coding 105244685 XR_868138 Gm40247 - - 4 D2.2|4 predicted gene, 40247 ncRNA 258093 Olfr336-ps1 MOR136-15P - 2|2 B olfactory receptor 336, pseudogene 1 pseudo 666448 Gm8112 EG666448 - 10|10 C1 predicted gene 8112 pseudo 13614 Mm.14543 NM_010104 ENSMUSG00000021367 Edn1 ET-1|PPET1|preproET - 13 A4|13 20.82 cM endothelin 1 protein-coding 105243865 XR_865190 Gm39596 - - 1 A3|1 predicted gene, 39596 ncRNA 105244838 XR_872664 Gm40374 - - 12 A3|12 predicted gene, 40374 ncRNA 105244146 XR_866198 Gm39811 - - 2 C1.1|2 predicted gene, 39811 ncRNA 100043317 Gm4355 - - 14|14 E1 tubulin, alpha 1B pseudogene pseudo 75519 Mm.416851 NR_152117 ENSMUSG00000105426 1700021F02Rik Gm42618 - 5|5 E5 RIKEN cDNA 1700021F02 gene ncRNA 112326 Wg2 - - - weight gain in high growth mice 2 unknown 73683 Mm.275744 NM_001111111 ENSMUSG00000047767 Atg16l2 2410118P20Rik - 7|7 E2 autophagy related 16-like 2 (S. cerevisiae) protein-coding 263406 Mm.291854 NM_153804 ENSMUSG00000052609 Plekhg3 BC030417 - 12|12 C3 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 70700 3021401L19Rik - - 2|2 RIKEN cDNA 3021401L19 gene protein-coding 667946 Igkv3-3 Igk-V21-3 - 6|6 C1 immunoglobulin kappa variable 3-3 other 59048 Mm.441410 NM_021550 ENSMUSG00000048970 C1galt1c1 1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc - X|X A3.3 C1GALT1-specific chaperone 1 protein-coding 13275 Del(14)22H Del22H - - deletion, Chr 14, Harwell 22 other 100043595 Mm.463581 NR_033693 Gm4541 - - 7 A3|7 NLR family, pyrin domain containing 4E pseudogene pseudo 108415 Xmmv19 Env-19|Xmmv-19 - - xenotropic-MCF leukemia virus 19 other 382780 Gm5197 - - 13|13 C2 thymine DNA glycosylase pseudogene pseudo 105447647 NR_131190 Gm45923 DRReRNA|Munc - 7 B3|7 predicted gene, 45923 ncRNA 22773 Mm.255890 NM_009575 ENSMUSG00000067860 Zic3 Bn|Ka - X A6|X 32.56 cM zinc finger protein of the cerebellum 3 protein-coding 100862085 Mm.291443 XR_874771 Gm16867 AA437542|BB104597|D530039A21Rik|Gm21464|Gm28049 - 14 D2|14 predicted gene, 16867 protein-coding 102633790 XR_379706 Gm31531 - - 9 E3.3|9 predicted gene, 31531 ncRNA 246746 Mm.277387 NM_145634 ENSMUSG00000047798 Cd300lf CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3 - 11|11 E2 CD300 molecule like family member F protein-coding 19625 Rb(8.9)8Mpl Rb8Mpl - - Robertsonian translocation, Chr 8 and 9, Montpellier 8 other 239985 Mm.133401 NM_001085355 ENSMUSG00000069729 Arid1b 8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235 - 17|17 A1 AT rich interactive domain 1B (SWI-like) protein-coding 78670 Mm.41479 NM_023900 ENSMUSG00000035278 Plekhj1 9530063M10Rik - 10|10 C1 pleckstrin homology domain containing, family J member 1 protein-coding 100039331 XR_001784559 Gm2163 - - 4 A5|4 predicted gene 2163 pseudo 100417618 Gm18717 - - 3|3 E1 corepressor interacting with RBPJ, 1 pseudogene pseudo 317690 Cyp1a1-ps - - - cytochrome P450, 1a1, aromatic compound inducible, pseudogene pseudo 100504589 Mm.483710 XR_375197 Gm11454 - - 2 H2|2 84.08 cM predicted gene 11454 ncRNA 62694 D17Mit118 - - 17 33.56 cM DNA segment, Chr 17, Massachusetts Institute of Technology 118 unknown 257793 Olfr940-ps1 EG257793|GA_x5J8B7W60AJ-540286-540740|Gm5014 - 9 A5.1|9 olfactory receptor 940, pseudogene 1 pseudo 432735 Mm.480282 NM_001166709 Vmn1r207-ps Gm11312|Vmn1r207 - 13|13 A3.1 vomeronasal 1 receptor 207, pseudogene protein-coding 26445 Mm.22233 NM_011970 ENSMUSG00000028837 Psmb2 AU045357|AW108089|C7-I|D4Wsu33e|HC7-I - 4 D2.2|4 60.9 cM proteasome (prosome, macropain) subunit, beta type 2 protein-coding 408075 D6Wum30 - - - DNA segment, Chr 6, Washington University School of Medicine 30 unknown 67015 Mm.209774 NM_025911 ENSMUSG00000030301 Ccdc91 1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56 - 6|6 G3 coiled-coil domain containing 91 protein-coding 100041831 Gm3534 - - 14 C1|14 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 13933 X83338 ESTM16 - - EST X83338 unknown 102640806 XR_388282 Gm36787 - - 19 A|19 predicted gene, 36787 protein-coding 74753 Mm.45973 NM_029086 ENSMUSG00000028331 Trmo 5830415F09Rik|AV014846|Nap1 - 4|4 B1 tRNA methyltransferase O protein-coding 100038506 Mm.450572 Gm10873 - - - predicted gene 10873 unknown 17617 Ms39 MMS39 - - minisatellites detected by probe MMS39 other 102637465 XR_374821 Gm34268 - - 2 E2|2 predicted gene, 34268 ncRNA 380787 Mm.125602 NM_001101503 ENSMUSG00000087075 Lbhd2 A230065H16Rik|Gm898|Lbh2 - 12|12 F1 LBH domain containing 2 protein-coding 30946 Mm.292094 NM_013924 ENSMUSG00000036376 Abt1 - - 13|13 A3.1 activator of basal transcription 1 protein-coding 62407 D16Mit164 - - 16 6.35 cM DNA segment, Chr 16, Massachusetts Institute of Technology 164 unknown 102640846 XR_377743 Gm36816 Gm43956 - 6 C1|6 predicted gene, 36816 ncRNA 104201 H12 H-12 - - histocompatibility 12 protein-coding 279872 Trav9n-1 Gm13951|Gm5074 - 14 C2|14 T cell receptor alpha variable 9N-1 other 53815 D17Leh108A D17Leh108|D17Tu108 - - DNA segment, Chr 17, Lehrach 108A unknown 70451 Mm.390342 NM_183286 ENSMUSG00000020834 Dhrs13 2610209N15Rik - 11|11 B5 dehydrogenase/reductase (SDR family) member 13 protein-coding 52162 D7Bir18e - - - DNA segment, Chr 7, Birkenmeier 18, expressed unknown 627895 Gm6808 EG627895 - 10|10 D2 NSA2 ribosome biogenesis homolog pseudogene pseudo 27053 Mm.2942 NM_012055 ENSMUSG00000029752 Asns - - 6|6 A1 asparagine synthetase protein-coding 105247004 XR_880692 Gm42188 - - 3 A2|3 predicted gene, 42188 ncRNA 102636638 Mm.399115 XR_374817 ENSMUSG00000087537 Gm13799 - - 2 E1|2 52.15 cM predicted gene 13799 ncRNA 666312 Obox3-ps2 EG666312|Gm8040 - 7|7 A1 oocyte specific homeobox 3, pseudogene 2 pseudo 76029 5830432F11Rik - - 9|9 RIKEN cDNA 5830432F11 gene protein-coding 432494 Mm.55016 Gm5427 EG432494 - 10|10 C3 predicted gene 5427 protein-coding 105244898 XR_872760 Gm40424 - - 12 C1|12 predicted gene, 40424 ncRNA 15495 Mm.14309 NM_008294 ENSMUSG00000095143 Hsd3b4 - - 3 F2.2|3 42.79 cM hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4 protein-coding 12868 Mm.14022 NM_007750 ENSMUSG00000035885 Cox8a COX8L - 19|19 A cytochrome c oxidase subunit VIIIa protein-coding 102637961 Mm.406630 XR_383705 ENSMUSG00000115855 Gm34643 - - 14 E2.3|14 predicted gene, 34643 ncRNA 60962 D2Mit464 - - 2 12.9 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 464 unknown 12269 Mm.306720 NM_007576 ENSMUSG00000026405 C4bp AI195242|C4bpa - 1 E4|1 56.89 cM complement component 4 binding protein protein-coding 102633835 XR_386419 Gm31565 - - 18 E3|18 predicted gene, 31565 ncRNA 62587 D13Mit102 - - 13 41.95 cM DNA segment, Chr 13, Massachusetts Institute of Technology 102 unknown 100034361 Mm.270393 NM_001081975 ENSMUSG00000048222 Mfap1b - - 2|2 E5 microfibrillar-associated protein 1B protein-coding 61431 D5Mit237 - - - DNA segment, Chr 5, Massachusetts Institute of Technology 237 unknown 110596 Mm.252718 NM_012026 ENSMUSG00000021662 Arhgef28 9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF - 13 D1|13 51.6 cM Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 140651 Leg2 - - 10 67.55 cM longevity extending gene 2 unknown 277854 Mm.101524 NM_177786 ENSMUSG00000037426 Depdc5 AV016528 - 5 B1|5 17.35 cM DEP domain containing 5 protein-coding 73616 Mm.159038 NR_033616 ENSMUSG00000037247 Pldi 1700125F08Rik|Poldi - 10|10 B4 polymorphic derived intron containing ncRNA 23958 Mm.103641 NM_013708 ENSMUSG00000032292 Nr2e3 A930035N01Rik|PNR|RNR|rd7 - 9 B|9 32.35 cM nuclear receptor subfamily 2, group E, member 3 protein-coding 19586 Rb(6.12)3Sic Rb3Sic - - Robertsonian translocation, Chr 6 and 12, Sicily 3 other 20933 Mm.397932 NM_011513 ENSMUSG00000015776 Med22 AW212655|AW558812|Surf-5|Surf5 - 2 A3|2 19.09 cM mediator complex subunit 22 protein-coding 105243055 XR_869941 Gm39087 - - 7 F3|7 predicted gene, 39087 ncRNA 30051 Mm.26768 NM_013891 ENSMUSG00000024215 Spdef PDEF|Pse - 17|17 A3.3 SAM pointed domain containing ets transcription factor protein-coding 226519 Mm.1249 NM_010683 ENSMUSG00000026478 Lamc1 Lamb2 - 1 G3|1 65.3 cM laminin, gamma 1 protein-coding 100417118 Gm15160 - - X|X F3 GDP-mannose 4, 6-dehydratase pseudogene pseudo 259064 Mm.311516 NM_147062 ENSMUSG00000044985 Olfr124 A3|MOR256-3 - 17|17 B1 olfactory receptor 124 protein-coding 67229 Mm.38529 NM_026045 ENSMUSG00000039449 Prpf18 2810441A10Rik - 2|2 A1 pre-mRNA processing factor 18 protein-coding 110685 Afr2 Afr-2|Rif - - alpha fetoprotein regulation 2, inducibility protein-coding 17545 Ms10j MMS10-J - - minisatellite 10j detected by probe MMS10 other 627511 Gm6765 EG627511 - 10|10 A2 ribosomal protein L7A pseudogene pseudo 170731 Mm.154312 NM_133201 ENSMUSG00000029020 Mfn2 D630023P19Rik|Fzo - 4|4 E2 mitofusin 2 protein-coding 26556 Mm.37533 NM_011982 ENSMUSG00000007617 Homer1 PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1 - 13|13 C3 homer scaffolding protein 1 protein-coding 211134 Mm.409446 NM_199364 ENSMUSG00000036306 Lzts1 F37|FEZ1|PSD-Zip70 - 8|8 B3.3 leucine zipper, putative tumor suppressor 1 protein-coding 69594 Mm.394095 2310026L22Rik - - 4|4 RIKEN cDNA 2310026L22 gene protein-coding 211472 Mm.377235 NM_207227 ENSMUSG00000062204 Olfr1373 GA_x6K02T2QP88-3283154-3284089 - 11|11 B1.3 olfactory receptor 1373 protein-coding 226652 Mm.251048 NM_001005508 ENSMUSG00000048865 Arhgap30 6030405P05Rik|Gm102|mFLJ00267 - 1|1 H3 Rho GTPase activating protein 30 protein-coding 17681 Mm.5820 NM_010827 ENSMUSG00000025930 Msc MyoR|bHLHa22 - 1 A3|1 4.5 cM musculin protein-coding 15958 Mm.2036 NM_008332 ENSMUSG00000045932 Ifit2 AV302338|Ifi54|P54 - 19|19 C1 interferon-induced protein with tetratricopeptide repeats 2 protein-coding 100417277 Gm14979 - - X|X E3 actin, alpha, cardiac muscle 1 pseudogene pseudo 667475 Gm8655 EG667475 - 12|12 D2 predicted gene 8655 pseudo 105245548 XR_873637 Gm40992 - - 13 B3|13 predicted gene, 40992 ncRNA 230044 Gm11907 - - 4|4 A4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 69627 Mm.271600 NM_001081120 ENSMUSG00000043068 Fam89a 2310031A18Rik - 8|8 E2 family with sequence similarity 89, member A protein-coding 105242896 Gm38980 - - 7|7 predicted gene, 38980 ncRNA 105246321 XR_876975 Gm41622 - - 17 E3|17 predicted gene, 41622 ncRNA 102640078 XR_881564 Gm36233 - - 4 E1|4 predicted gene, 36233 ncRNA 16542 Mm.285 NM_010612 ENSMUSG00000062960 Kdr 6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2 - 5 C3.3|5 40.23 cM kinase insert domain protein receptor protein-coding 59069 Mm.240839 NM_022314 ENSMUSG00000027940 Tpm3 TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm - 3|3 F1 tropomyosin 3, gamma protein-coding 328778 Mm.266033 NM_177375 ENSMUSG00000079657 Rab26 A830020M03Rik - 17|17 A3.3 RAB26, member RAS oncogene family protein-coding 19667 Rbpj-ps3 Igkrsbp-rs3|Rbpsuh-rs3 - 6 B2.3|6 22.19 cM recombination signal binding protein for immunoglobulin kappa J region, pseudogene 3 pseudo 244334 Mm.390008 NM_153108 ENSMUSG00000031471 Defb8 BD-8|Defr1 - 8|8 A1.3 defensin beta 8 protein-coding 666407 Mrip-ps EG666407|Gm8086 - 7|7 A2 Mom radiation induced polyposis, pseudogene pseudo 108348 Emv6 Emv-6 - - endogenous ecotropic MuLV 6 other 19789 rmy - - - rimy unknown 100034822 Circp2 - - 17 8.14 cM circadian photosensitivity 2 unknown 102636877 XR_378357 Gm33827 - - 7 E1|7 predicted gene, 33827 ncRNA 277203 Mm.484240 NM_001160402 ENSMUSG00000079625 Tm4sf19 EG277203 - 16|16 B3 transmembrane 4 L six family member 19 protein-coding 74085 4933414I06Rik - - 15|15 B3.1 RIKEN cDNA 4933414I06 gene unknown 103511 Mm.66334 NM_178908 ENSMUSG00000049872 Fam26e BB146404|Calhm5 - 10|10 B1 family with sequence similarity 26, member E protein-coding 102638078 Gm34727 - - 1|1 predicted gene, 34727 pseudo 628521 Vmn1r-ps47 EG628521|Gm6891 - 7|7 A1 vomeronasal 1 receptor, pseudogene 47 pseudo 105243860 XR_865186 Gm39591 - - 1 A3|1 predicted gene, 39591 ncRNA 105246718 Gm41961 - - 1|1 predicted gene, 41961 ncRNA 100034841 Pcyts6 - - 18 28.22 cM plasmacytoma susceptibility 6 unknown 61275 D2Mit242 - - 2 31.72 cM DNA segment, Chr 2, Massachusetts Institute of Technology 242 unknown 110120524 LOC110120524 - - - VISTA enhancer mm1456 biological-region 100035321 Gwth4 - - - growth traits 4 unknown 108167550 XR_001778645 Gm38250 - - 8 D3|8 predicted gene, 38250 ncRNA 102635286 XR_381658 Gm32664 - - 12 C2|12 predicted gene, 32664 ncRNA 100689 Mm.34694 NM_133903 ENSMUSG00000037379 Spon2 2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin - 5|5 B1 spondin 2, extracellular matrix protein protein-coding 100126472 Trav5-2 TRAV5-2P - 14|14 C2 T cell receptor alpha variable 5-2 pseudo 110373 Tpm3-rs9 - - - tropomyosin 3, related sequence 9 protein-coding 105247162 Gm42311 - - 4|4 predicted gene, 42311 ncRNA 26945 Mm.180108 NM_012034 ENSMUSG00000033200 Tpsg1 Prss31|Tmt - 17 A3.3|17 12.53 cM tryptase gamma 1 protein-coding 624866 Mm.296317 NM_001037923 ENSMUSG00000074579 Lekr1 EG546798|EG624866|Gm6534 - 3|3 E1 leucine, glutamate and lysine rich 1 protein-coding 320171 Mm.103211 D130019J16Rik - - 1|1 RIKEN cDNA D130019J16 gene protein-coding 16895 ll - - - long lived unknown 109814 H46 H-4|H-46|H4 - - histocompatibility 46 protein-coding 630061 NM_001039237 Trav7-5 EG630061|Gm7024 - 14 C2|14 T cell receptor alpha variable 7-5 other 259003 Mm.390862 NM_147001 ENSMUSG00000071510 Olfr172 MOR184-2 - 16|16 C1.2 olfactory receptor 172 protein-coding 229228 Mm.436967 NM_153561 ENSMUSG00000050174 Nudt6 Asfgf2b - 3|3 B nudix (nucleoside diphosphate linked moiety X)-type motif 6 protein-coding 116453 Lore8 - - 1 65.18 cM loss of righting induced by ethanol 8 unknown 105243089 NM_001347556 ENSMUSG00000110091 Gm39115 - - 7 F5|7 predicted gene, 39115 protein-coding 22062 Mm.78015 NM_011642 ENSMUSG00000029026 Trp73 TAp73|Tp73|deltaNp73|p73 - 4 E2|4 83.79 cM transformation related protein 73 protein-coding 102465763 NR_106116 ENSMUSG00000098251 Mir7656 Gm27614|mmu-mir-7656 - 9|9 E3.3 microRNA 7656 ncRNA 319848 Mm.97959 NM_177016 ENSMUSG00000021336 Slc17a4 9130214H05Rik - 13|13 A3.1 solute carrier family 17 (sodium phosphate), member 4 protein-coding 21317 T(X;7)2Neu T2Neu - - reciprocal translocation, Chr X and 7, Neuhauser-Klaus 2 other 214987 Mm.490308 NM_145412 ENSMUSG00000046691 Chtf8 5830457O10Rik|Ctf8|Derpc - 8|8 D3 CTF8, chromosome transmission fidelity factor 8 protein-coding 105245882 XR_875022 LOC105245882 - - 15 A1 transcription factor BTF3 pseudogene pseudo 268498 Mm.227970 NM_001085512 ENSMUSG00000078605 E030025P04Rik Gm664 - 11|11 E1 RIKEN cDNA E030025P04 gene ncRNA 58875 Mm.286458 NM_145567 ENSMUSG00000029776 Hibadh 6430402H10Rik|AI265272 - 6|6 B3 3-hydroxyisobutyrate dehydrogenase protein-coding 777782 Ighv5-8 Gm17309 - 12|12 F1 immunoglobulin heavy variable V5-8 pseudo 100502589 Gm19267 - - 15 E1|15 38.59 cM predicted gene, 19267 pseudo 69902 Mm.27871 NM_023536 ENSMUSG00000028741 Mrto4 2610012O22Rik|Mg684|Mrt4 - 4|4 D3 mRNA turnover 4, ribosome maturation factor protein-coding 668193 Gm9035 EG668193 - 10 D2|10 LIM-domain containing, protein kinase pseudogene pseudo 14036 exma OVE597 - - exencephaly and severe microphthalmia/anophthalmia unknown 100036040 Bdlnq7 - - - body length QTL 7 unknown 108168298 XR_001781964 Gm46559 - - 16 B3|16 predicted gene, 46559 ncRNA 16315 In(X)3H-d In(X)3H|In3H - - inversion, Chr X, Harwell 3, distal other 638487 Gm7239 EG638487 - 12|12 B1 SET translocation pseudogene pseudo 258307 Mm.377427 NM_146310 ENSMUSG00000093980 Olfr493 MOR204-35 - 7|7 E3 olfactory receptor 493 protein-coding 108167801 XR_001779742 LOC108167801 - - 10 A4 uncharacterized LOC108167801 protein-coding 109602 Uncv - - - uncovered protein-coding 72264 Mm.396204 NR_040494 ENSMUSG00000099968 1700029J03Rik - - 16|16 C4 RIKEN cDNA 1700029J03 gene ncRNA 102634076 Mm.444832 XR_874530 Gm20642 - - 14 B|14 22.22 cM predicted gene 20642 ncRNA 19514 Rb(2.5)2Tu Rb2Tu - - Robertsonian translocation, Chr 2 and 5, Tubingen 2 other 102634218 XR_375679 Gm25404 - - 3 C|3 predicted gene, 25404 ncRNA 102465996 NR_106177 ENSMUSG00000098942 Mir8100 Gm27638|mmu-mir-8100 - 11|11 B1.1 microRNA 8100 ncRNA 209351 Mm.293365 NM_001033240 ENSMUSG00000074595 Wfdc6a Gm122 - 2|2 H3 WAP four-disulfide core domain 6A protein-coding 213819 Mm.270703 NM_145398 ENSMUSG00000015189 Casd1 Cas1|Cast1|SOAT - 6 A1|6 1.81 cM CAS1 domain containing 1 protein-coding 100038761 Mm.403779 XR_001780278 ENSMUSG00000086058 Unc45bos Gm12575 - 11 C|11 unc-45 myosin chaperone B, opposite strand ncRNA 327766 Mm.2479 NM_177794 ENSMUSG00000060044 Tmem26 3230401A06|AI195372 - 10|10 B5.3 transmembrane protein 26 protein-coding 108167884 LOC108167884 - - 11 A1 40S ribosomal protein S15a pseudogene pseudo 62237 D17Mit60 - - 17 15.64 cM DNA segment, Chr 17, Massachusetts Institute of Technology 60 unknown 105242809 XR_869561 Gm38918 - - 6 G2|6 predicted gene, 38918 ncRNA 100504508 NM_001008551 BC085271 - - 1 H5|1 protein phosphatase 2A inhibitor-2 I-2PP2A-related pseudo 497254 LOC497254 - - - uncharacterized LOC497254 unknown 57014 Mm.117131 NM_020274 ENSMUSG00000008590 Htr3b 5-HT3B - 9|9 A5.3 5-hydroxytryptamine (serotonin) receptor 3B protein-coding 74968 Mm.359821 NR_045973 ENSMUSG00000085641 4930465M20Rik 4930431H15Rik - 12|12 F1 RIKEN cDNA 4930465M20 gene ncRNA 102636791 XR_377199 Gm33765 - - 5 G2|5 predicted gene, 33765 ncRNA 619547 Mm.391636 NM_001199350 Rpl34-ps1 EG619547|Gm10239 - 6|6 C1 ribosomal protein L34, pseudogene 1 protein-coding 105243362 XR_870582 Gm39309 - - 9 A3|9 predicted gene, 39309 ncRNA 320367 Mm.404206 A530076I17Rik - - 14|14 RIKEN cDNA A530076I17 gene ncRNA 245195 Mm.231288 NM_181596 ENSMUSG00000022651 Retnlg Fizz3|Relmg|Xcp1 - 16 B5|16 30.75 cM resistin like gamma protein-coding 77246 Mm.428336 9330177L23Rik - - 5|5 RIKEN cDNA 9330177L23 gene protein-coding 218236 Mm.426571 NM_001033268 ENSMUSG00000038014 Fam120a C9orf10|Ossa - 13|13 A5 family with sequence similarity 120, member A protein-coding 100039222 Mm.405596 NR_046066 ENSMUSG00000100155 Gm2109 - - 9 E2|9 predicted gene 2109 ncRNA 100416372 Gm18078 - - 14|14 A2 predicted gene, 18078 pseudo 100036074 Skmw9 - - - skeletal muscle weight 9 unknown 112011 Bw6 - - - body weight QTL 6 unknown 70998 Mm.26870 NM_027642 ENSMUSG00000025626 Phf6 2700007B13Rik|4931428F02Rik|mKIAA1823 - X|X A5 PHD finger protein 6 protein-coding 109286562 LOC109286562 - - - HLEB enhancer downstream of Tbx4 biological-region 53600 Mm.303703 NM_016897 ENSMUSG00000013701 Timm23 Tim23 - 14|14 B translocase of inner mitochondrial membrane 23 protein-coding 100169868 Mm.460196 XM_011244774 Gm3173 100041162 - 14 A1|14 predicted gene 3173 protein-coding 218460 Mm.33856 NM_172590 ENSMUSG00000042015 Wdr41 B830029I03Rik|MSTP048 - 13|13 D1 WD repeat domain 41 protein-coding 14912 Mm.28308 NM_183248 ENSMUSG00000041309 Nkx6-2 Gtx|Nkx6.2 - 7 F4|7 84.57 cM NK6 homeobox 2 protein-coding 100038759 Mm.397942 Gm17244 - - - predicted gene, 17244 unknown 622319 Mm.491049 NM_001037912 ENSMUSG00000070995 Gm6313 EG622319 - 6 G3|6 predicted gene 6313 ncRNA 54418 Mm.330620 NM_019445 ENSMUSG00000028354 Fmn2 AU024104 - 1 H3|1 81.04 cM formin 2 protein-coding 57370 Mm.274011 NM_020579 ENSMUSG00000052423 B4galt3 9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981 - 1 H3|1 79.29 cM UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3 protein-coding 108583 Iap3rc3 - - - intracisternal A-type particle, U3 region, SINE repeat c-3 other 18217 Mm.281715 NM_008747 ENSMUSG00000020591 Ntsr2 NT-R-2|NT2R|NTR2|NTRL - 12 A1.1|12 7.98 cM neurotensin receptor 2 protein-coding 102635661 XM_006531565 LOC102635661 - - 8 D3 myosin light polypeptide 6-like protein-coding 100503598 Gm19790 - - 9|9 4.24 cM cyclin-dependent kinases regulatory subunit 2-like pseudo 665228 Gm11928 - - 4|4 A5 predicted gene 11928 pseudo 547150 Mm.359054 NR_030708 ENSMUSG00000071796 6820431F20Rik - - 8|8 A2 cadherin 11 pseudogene pseudo 99215 AU022255 - - - expressed sequence AU022255 unknown 14805 Mm.5134 NM_010348 ENSMUSG00000022935 Grik1 A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1 - 16 C3.3|16 50.23 cM glutamate receptor, ionotropic, kainate 1 protein-coding 102640056 Gm21792 - - Y|Y predicted gene, 21792 protein-coding 116914 Mm.35444 NM_054087 ENSMUSG00000040918 Slc19a2 AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1 - 1 H2.2|1 71.56 cM solute carrier family 19 (thiamine transporter), member 2 protein-coding 102633052 XR_383637 Gm30970 - - 14 D3|14 predicted gene, 30970 ncRNA 22169 Mm.271839 NM_020557 ENSMUSG00000020638 Cmpk2 1200004E04Rik|TDKI|Tyki - 12 A2|12 9.69 cM cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial protein-coding 18344 Mm.222838 NM_146963 ENSMUSG00000066122 Olfr45 IB6|MOR253-2 - 7|7 F4 olfactory receptor 45 protein-coding 15194 Mm.209071 NM_010414 ENSMUSG00000029104 Htt AI256365|C430023I11Rik|Hd|Hdh|IT15 - 5 B2|5 17.92 cM huntingtin protein-coding 61947 D6Mit326 - - 6 44.93 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 326 unknown 224630 Mm.21795 NM_172149 ENSMUSG00000024191 Bnip1 2010005M06Rik|5930429G21Rik|Sec20 - 17|17 A3.3 BCL2/adenovirus E1B interacting protein 1 protein-coding 100859962 Mm.392575 NR_045695 ENSMUSG00000108714 Gm21057 - - 7 D2|7 predicted gene, 21057 ncRNA 100503122 Gm19565 - - 6|6 18.19 cM predicted gene, 19565 ncRNA 636017 LOC636017 - - - immunglobulin heavy chain protein-coding 100417041 Gm18380 - - 19|19 C1 vaccinia related kinase 1 pseudogene pseudo 67561 Mm.104789 NM_026236 ENSMUSG00000032512 Wdr48 8430408H12Rik|Uaf1|mKIAA1449 - 9|9 F3 WD repeat domain 48 protein-coding 98870 Mm.415380 NM_178885 ENSMUSG00000035875 AI182371 AI046667 - 2|2 B expressed sequence AI182371 protein-coding 109949 Alan1 - - 17 2.68 cM alloantigen response 1 unknown 21140 T(2C1-2;4D)41Dn T(2;4)41Dn|T41Dn - - reciprocal translocation, Chr 2, cytogenetic band C1-2; and Chr 4, cytogenetic band D, Davisson 41 other 435558 Gm5688 EG435558 - 18|18 A2 tubulin, alpha 1C pseudogene pseudo 69334 Mm.63770 NR_045140 ENSMUSG00000102069 1700012I11Rik - - 15|15 D2 RIKEN cDNA 1700012I11 gene ncRNA 102638284 Mm.421266 Gm34885 - - 9|9 predicted gene, 34885 ncRNA 105242435 XM_017315282 Gm38704 - - 12 A1.2|12 predicted gene, 38704 protein-coding 665948 Gm13407 - - 2|2 B predicted gene 13407 pseudo 102635898 XR_387700 Gm33118 - - 5 F|5 predicted gene, 33118 ncRNA 232217 Mm.281744 NM_175017 ENSMUSG00000055403 4933427D06Rik - - 6|6 D1 RIKEN cDNA 4933427D06 gene ncRNA 20997 Mm.913 NM_009309 ENSMUSG00000062327 T Bra|D17Mit170|Low|Lr|T1|Tbxt|Tl2|Tl3|cou|me75 - 17 A1|17 4.92 cM brachyury, T-box transcription factor T protein-coding 105245606 XR_873862 Gm41037 - - 13 D1|13 predicted gene, 41037 ncRNA 100417998 Gm15225 - - X|X F5 glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene pseudo 100039905 XM_011251103 ENSMUSG00000100240 Gm20820 - - Y|Y E predicted gene, 20820 protein-coding 62315 D2Mit113 - - 2 96.21 cM DNA segment, Chr 2, Massachusetts Institute of Technology 113 unknown 404584 AL117934 - - - expressed sequence AL117934 unknown 105243226 XR_878953 Gm39204 Gm45325 - 8 C1|8 predicted gene, 39204 ncRNA 102639239 XM_017316287 Gm35595 - - 14 D1|14 predicted gene, 35595 protein-coding 60815 D4Mit51 - - 4 86.17 cM DNA segment, Chr 4, Massachusetts Institute of Technology 51 unknown 97134 C77282 - - - expressed sequence C77282 unknown 75915 Mm.402084 XR_374937 Bloc1s6os 4930580A09Rik - 2|2 E5 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin, opposite strand ncRNA 56747 Mm.143742 NM_019982 ENSMUSG00000058153 Sez6l AI843918|AIG1|AW539724|Acig1|BSRP-B|mKIAA0927 - 5|5 F seizure related 6 homolog like protein-coding 102466766 NR_105888 ENSMUSG00000098855 Mir6923 Gm27312|mmu-mir-6923 - 11|11 B3 microRNA 6923 ncRNA 100035964 Lbn3 LBN3.1 - 3 32.25 cM long bones 3 unknown 56503 Mm.272618 NM_019683 ENSMUSG00000031931 Ankrd49 AW060934|C86108|Gbif - 9|9 A2 ankyrin repeat domain 49 protein-coding 100529082 Mm.484641 NM_001199967 ENSMUSG00000079492 Gm11127 - - 17 18.88 cM|17 B1 predicted gene 11127 protein-coding 100502903 Gm19444 - - 6 G1|6 66.59 cM tubulin, beta 3, pseudogene pseudo 625508 Mm.391254 NM_001359701 Gm14596 - - X A5|X predicted gene 14596 protein-coding 105243217 XR_870509 Gm39196 - - 8 B3.3|8 predicted gene, 39196 ncRNA 492966 Hdlq15 - - - HDL QTL 15 unknown 21435 tclLub1 tcl-Lub1 - - t-complex lethal Lub1 unknown 102637445 Gm34251 - - 15|15 predicted gene, 34251 ncRNA 100418320 Gm19138 - - 7|7 F3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 pseudogene pseudo 668053 Gm8950 EG668053 - 6 A3.1|6 PRP18 pre-mRNA processing factor 18 homolog pseudogene pseudo 75816 4930466I24Rik - - 6|6 RIKEN cDNA 4930466I24 gene protein-coding 381644 Mm.332452 NM_199032 ENSMUSG00000036403 Cep135 BC062951|Cep4|Gm1044 - 5|5 C3.3 centrosomal protein 135 protein-coding 102633007 XR_380238 Gm26564 - - 10 B1|10 predicted gene, 26564 ncRNA 102635371 XR_879138 Gm32728 - - 8 D2|8 predicted gene, 32728 ncRNA 102632283 Gm30399 - - 2|2 predicted gene, 30399 ncRNA 432562 Mm.406948 NR_040284 ENSMUSG00000086789 Lyrm7os Gm12228 - 11|11 B1.3 LYR motif containing 7, opposite strand ncRNA 105246111 XR_876066 Gm41453 - - 16 B4|16 predicted gene, 41453 ncRNA 70833 4733401A01Rik - - 4|4 RIKEN cDNA 4733401A01 gene protein-coding 102637933 XR_384306 Gm34622 - - 15 E2|15 predicted gene, 34622 ncRNA 102635057 XR_386431 Gm32489 - - 18 E4|18 predicted gene, 32489 ncRNA 73355 Mm.233642 1700048P04Rik - - 10|10 RIKEN cDNA 1700048P04 gene protein-coding 620290 Gm6141 EG620290 - 3|3 A2 B-cell leukemia/lymphoma 10 pseudogene pseudo 606527 Gm6059 Gabarapl2-ps3 - 3 H1|3 GABA(A) receptor-associated protein-like 2 pseudogene 3 pseudo 112020 Dob9 - - - dietary obesity 9 unknown 105245642 XR_873972 Gm41070 - - 13 D2.2|13 predicted gene, 41070 ncRNA 67153 Mm.26040 NM_026001 ENSMUSG00000021932 Rnaseh2b 1110019N06Rik|2610207P08Rik|Dleu8 - 14|14 D1 ribonuclease H2, subunit B protein-coding 100072 Mm.318846 NM_001081557 ENSMUSG00000014592 Camta1 1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833 - 4|4 E2 calmodulin binding transcription activator 1 protein-coding 105243395 Mm.421389 XR_870704 Gm39329 - - 9 A5.2|9 predicted gene, 39329 ncRNA 102635112 XR_388233 Gm32532 - - 8 E2|8 predicted gene, 32532 ncRNA 108943 Mm.471692 NM_175389 ENSMUSG00000004127 Trmt10a 3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2 - 3|3 G3 tRNA methyltransferase 10A protein-coding 56642 Mm.143737 NM_020033 ENSMUSG00000025172 Ankrd2 Arpp|mArpp - 19|19 C3 ankyrin repeat domain 2 (stretch responsive muscle) protein-coding 53599 Mm.269815 NM_016898 ENSMUSG00000019818 Cd164 A115|A24|AA589639|AW540279|MGC-24|MSSP - 10 B2|10 22.46 cM CD164 antigen protein-coding 100039939 Mm.6660 NM_001199964 ENSMUSG00000093828 Gm2506 - - 4 A5|4 predicted gene 2506 protein-coding 212073 Mm.212688 NM_172500 ENSMUSG00000054150 Syne3 KASH3|nesprin-3 - 12|12 E spectrin repeat containing, nuclear envelope family member 3 protein-coding 330305 Mm.123868 NM_183309 ENSMUSG00000052730 Gm5111 A630038D02|EG330305 - 6 B2.3|6 predicted gene 5111 protein-coding 102639623 Gm15923 - - 7 A1|7 2.46 cM predicted gene 15923 pseudo 105243985 Gm39684 - - 1|1 predicted gene, 39684 ncRNA 215627 Mm.428660 NM_153541 ENSMUSG00000048485 Zbtb8b AV220464|BC023839|BOZF1|Zbtb8 - 4|4 D2.2 zinc finger and BTB domain containing 8b protein-coding 105245896 XR_875052 ENSMUSG00000115492 Gm41277 - - 15 A2|15 predicted gene, 41277 ncRNA 732524 Gt(pU21)51Imeg Ayu21-51|GtAyu21-51 - - gene trap 51, Institute of Molecular Embryology and Genetics unknown 629342 Rpl7a-ps4 EG629342|Gm6965 - 16|16 C1.1 ribosomal protein 7A, pseudogene 4 pseudo 212880 Mm.202725 NM_145975 ENSMUSG00000021500 Ddx46 2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801 - 13|13 B1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 protein-coding 101118 Mm.254845 NM_028990 ENSMUSG00000029569 Tmem168 5730526F17Rik|8430437G11Rik|AI462344|AI504145 - 6|6 A1 transmembrane protein 168 protein-coding 102632895 XR_390996 Gm30851 - - 4 E2|4 predicted gene, 30851 ncRNA 100502684 Gm20621 - - 15|15 44.39 cM predicted gene 20621 ncRNA 258357 Mm.377454 NM_146360 ENSMUSG00000045824 Olfr574 MOR14-9 - 7|7 E3 olfactory receptor 574 protein-coding 100416315 Gm18033 - - 1|1 A5 ribosomal protein L17 pseudogene pseudo 622336 Rps7-ps1 Gm6315 - 8|8 B3.3 ribosomal protein S7, pseudogene 1 pseudo 100416347 Gm18059 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 62780 D16Mit135 - - 16 27.38 cM DNA segment, Chr 16, Massachusetts Institute of Technology 135 unknown 71742 Mm.155877 NM_027895 ENSMUSG00000032308 Ulk3 1200015E14Rik - 9|9 B unc-51-like kinase 3 protein-coding 100336 Mm.105230 NM_146154 ENSMUSG00000028882 Ppp1r8 6330548N22Rik|AU044684|NIPP1 - 4|4 D2.3 protein phosphatase 1, regulatory (inhibitor) subunit 8 protein-coding 105245806 XR_874781 Gm41196 - - 14 D2|14 predicted gene, 41196 ncRNA 104214 Clcnk2 - - - chloride channel K2 protein-coding 61011 D4Mit84 - - 4 37.32 cM DNA segment, Chr 4, Massachusetts Institute of Technology 84 unknown 238076 Mm.113278 NM_173417 ENSMUSG00000043673 Kcns3 - - 12 A1.1|12 5.58 cM potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 protein-coding 105243902 XR_865339 Gm39623 - - 1 B|1 predicted gene, 39623 ncRNA 624260 Gm6488 EG624260 - X|X F2 predicted gene 6488 pseudo 72079 Mm.394994 2010013B24Rik - - 6|6 RIKEN cDNA 2010013B24 gene protein-coding 101240 Mm.152120 NM_001013366 ENSMUSG00000058486 Wdr91 9530020G05Rik|AI987683|AU018665 - 6|6 B1 WD repeat domain 91 protein-coding 100036099 Lmrq5 - - - Leishmania major resistance QTL 5 unknown 77911 9230118H08Rik - - - RIKEN cDNA 9230118H08 gene protein-coding 60322 Mm.44827 NM_021715 ENSMUSG00000037347 Chst7 2600013M07Rik|C6ST-2|GST5|Gn6st-4|glcNAc6ST-4 - X|X A1.3 carbohydrate (N-acetylglucosamino) sulfotransferase 7 protein-coding 665412 Rpsa-ps9 Gm13374 - 2|2 A3 ribosomal protein SA, pseudogene 9 pseudo 102637619 XR_381577 Gm34381 - - 12 B3|12 predicted gene, 34381 ncRNA 102639174 XR_384721 Gm35545 - - 16 A3|16 predicted gene, 35545 ncRNA 102465190 NR_105786 ENSMUSG00000099308 Mir6367 Gm27467|mmu-mir-6367 - 16|16 C3.3 microRNA 6367 ncRNA 111693 Iapt3 - - - intracisternal A particle, tumor specific 3 other 102635960 LOC102635960 - - X F2 60S ribosomal protein L39 pseudogene pseudo 100504313 Gm20164 - - 16 B1|16 12.47 cM mitochondrial import inner membrane translocase subunit TIM14-like pseudo 100416861 Gm18294 - - 3|3 E1 vomeronasal 2, receptor 7 pseudogene pseudo 116847 Mm.214514 NM_054077 ENSMUSG00000041577 Prelp 7330409J17Rik|SLRR2A - 1 E4|1 58.02 cM proline arginine-rich end leucine-rich repeat protein-coding 353172 Mm.250004 NM_180678 ENSMUSG00000029777 Gars GENA202|Gena201|Nmf249|Sgrp23 - 6 B3|6 27.29 cM glycyl-tRNA synthetase protein-coding 108167702 LOC108167702 - - 9 F1 60S ribosomal protein L27 pseudogene pseudo 100043646 Rpl21-ps12 EG434067|Gm16376 - 6|6 D1 ribosomal protein L21, pseudogene 12 pseudo 105245281 XR_872022 Gm40757 - - 10 D1|10 predicted gene, 40757 ncRNA 102635737 XR_373672 Gm32999 - - 1 H2.3|1 predicted gene, 32999 ncRNA 100526492 NR_130339 ENSMUSG00000096360 Mir466b-7 mmu-mir-466b-7 - 2 A1|2 8.22 cM microRNA 466b-7 ncRNA 19725 Mm.102 NM_009056 ENSMUSG00000024206 Rfx2 5430432H19Rik - 17 D|17 29.5 cM regulatory factor X, 2 (influences HLA class II expression) protein-coding 71156 Mm.250837 NM_027699 ENSMUSG00000020545 Lrrc72 1700108M19Rik|4933421E18Rik - 12|12 A3 leucine rich repeat containing 72 protein-coding 320328 Mm.400355 B130024M06Rik - - 19|19 RIKEN cDNA B130024M06 gene unknown 100036518 Mm.455332 NM_001083311 ENSMUSG00000069280 Vmn1r223 Gm11330 - 13|13 A3.1 vomeronasal 1 receptor 223 protein-coding 210544 Mm.390835 NM_199300 ENSMUSG00000022364 Tbc1d31 4B3|D330013L20Rik|Gm85|Wdr67 - 15|15 D1 TBC1 domain family, member 31 protein-coding 103554 Mm.240066 NM_134013 ENSMUSG00000040850 Psme4 AA409398|AU041366|TEMO|mKIAA0077 - 11|11 A4 proteasome (prosome, macropain) activator subunit 4 protein-coding 102632990 Mm.429446 NR_155422 A730098A19Rik - - 8|8 E2 RIKEN cDNA A730098A19 gene ncRNA 215856 Mm.377238 NM_001010829 ENSMUSG00000095647 Taar7a Gm229|taR-7a - 10|10 A4 trace amine-associated receptor 7A protein-coding 11634 Mm.35300 NM_009646 ENSMUSG00000000731 Aire - - 10 C1|10 39.72 cM autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy) protein-coding 70433 Mm.275288 NM_027426 ENSMUSG00000029005 Draxin 2610109H07Rik|neucrin - 4|4 E2 dorsal inhibitory axon guidance protein protein-coding 102638916 XR_383718 Gm35362 - - 14 E2.3|14 predicted gene, 35362 ncRNA 215653 Mm.204737 NM_175445 ENSMUSG00000027339 Rassf2 3830431H01Rik|9030412M04Rik|AI852669|AW495050 - 2|2 F2 Ras association (RalGDS/AF-6) domain family member 2 protein-coding 667865 Igkv6-17 Igk-V19-17 - 6|6 C1 immunoglobulin kappa variable 6-17 other 66120 Mm.30729 NM_024169 ENSMUSG00000003355 Fkbp11 1110002O23Rik|FKBP-11 - 15|15 F1 FK506 binding protein 11 protein-coding 105243181 XR_870417 Gm39171 - - 8 B1.1|8 predicted gene, 39171 ncRNA 100041120 Gm3150 - - 15 D3|15 guanine nucleotide binding protein (G protein), gamma 5 pseudogene pseudo 105718 Mm.403706 BB176409 - - - expressed sequence BB176409 protein-coding 106648 Mm.26539 NM_134127 ENSMUSG00000073424 Cyp4f15 AI787289|Cyp4f-15 - 17|17 B1 cytochrome P450, family 4, subfamily f, polypeptide 15 protein-coding 394433 Mm.300095 NM_201643 ENSMUSG00000089943 Ugt1a5 - - 1|1 D UDP glucuronosyltransferase 1 family, polypeptide A5 protein-coding 100126004 Ramls2 - - - radiation-induced acute myeloid leukemia sensitivity 2 unknown 100040923 XM_011244789 ENSMUSG00000090364 Gm3043 - - 14 A1|14 predicted gene 3043 protein-coding 102643088 XM_011247423 Gm38656 - - 19 A|19 predicted gene, 38656 protein-coding 97294 Mm.486614 C79468 - - - expressed sequence C79468 unknown 71656 4930513L20Rik - - 7|7 RIKEN cDNA 4930513L20 gene protein-coding 100502819 Mm.392319 NR_152222 ENSMUSG00000097211 BC065403 A930005F02Rik - 9|9 D cDNA sequence BC065403 ncRNA 110657 Idd8 Idd-8 - 14 11.53 cM insulin dependent diabetes susceptibility 8 protein-coding 381339 Mm.334678 NM_001081198 ENSMUSG00000079588 Tmem182 2310079P10Rik|AI414494 - 1|1 B transmembrane protein 182 protein-coding 268656 Mm.240336 NM_009269 ENSMUSG00000021468 Sptlc1 AW552086|C77762|E030036H05|Lcb1|SPT1 - 13|13 B1 serine palmitoyltransferase, long chain base subunit 1 protein-coding 492998 Lvrq5 - - - liver weight QTL 5 unknown 67374 Mm.41758 NM_023844 ENSMUSG00000053062 Jam2 1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM - 16|16 C3.3 junction adhesion molecule 2 protein-coding 52824 D5Bwg0676e - - - DNA segment, Chr 5, Brigham & Women's Genetics 0676 expressed unknown 67847 Mm.292168 NM_026408 ENSMUSG00000024534 Sncaip 2810407O15Rik|4933427B05Rik|BB104594|SYPH1 - 18|18 D1 synuclein, alpha interacting protein (synphilin) protein-coding 102465890 NR_106175 ENSMUSG00000098498 Mir8099-1 Gm27917|mmu-mir-8099-1 - 12|3 F2.1 microRNA 8099-1 ncRNA 386463 Mm.426664 NM_001008424 ENSMUSG00000039518 Cdsn AI747712 - 17|17 B1 corneodesmosin protein-coding 331476 Gm5125 EG331476 - X|X D predicted gene 5125 protein-coding 75833 Mm.159596 NR_131026 ENSMUSG00000112201 4930532I03Rik - - 10|10 D1 RIKEN cDNA 4930532I03 gene ncRNA 18503 Mm.315502 NM_008780 ENSMUSG00000037034 Pax1 Pax-1|hbs|hunchback|un|undulated|wt - 2 G2|2 72.63 cM paired box 1 protein-coding 62868 D11Mit285 - - 11 54.64 cM DNA segment, Chr 11, Massachusetts Institute of Technology 285 unknown 109279994 LOC109279994 Mm777 - 2|2 VISTA enhancer mm777 biological-region 18991 Mm.297371 NM_011141 ENSMUSG00000090125 Pou3f1 Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1 - 4 D2.2|4 57.86 cM POU domain, class 3, transcription factor 1 protein-coding 105108 AA986891 - - - expressed sequence AA986891 unknown 214601 Mm.19931 NM_145406 ENSMUSG00000032806 Slc10a3 DXHXS253E|DXS253Eh|DXSmhG28|P3 - X A7.3|X 38.0 cM solute carrier family 10 (sodium/bile acid cotransporter family), member 3 protein-coding 235036 Mm.2930 NM_145610 ENSMUSG00000004100 Ppan A230087P06Rik|SSF1 - 9|9 A3 peter pan homolog protein-coding 69120 Mm.276391 NR_040417 ENSMUSG00000087331 1810021B22Rik - - 15|15 E3 RIKEN cDNA 1810021B22 gene ncRNA 671741 Gm16411 EG632168 - X|X A6 melanoma antigen family A pseudogene pseudo 666533 Vmn2r-ps24 EG666533|Gm8150 - 5 G2|5 vomeronasal 2, receptor, pseudogene 24 pseudo 20229 Mm.2734 NM_009121 ENSMUSG00000025283 Sat1 AA617398|SSAT|Sat - X F3|X 72.38 cM spermidine/spermine N1-acetyl transferase 1 protein-coding 75578 Mm.276098 NM_029347 ENSMUSG00000028573 Fggy 2310009E04Rik - 4|4 C5 FGGY carbohydrate kinase domain containing protein-coding 12630 Mm.117180 NM_007686 ENSMUSG00000058952 Cfi - - 3 G3|3 59.21 cM complement component factor i protein-coding 105246056 Mm.256021 NR_137279 ENSMUSG00000048603 Gm9828 - - 13 51.93 cM|13 D1 predicted gene 9828 ncRNA 100417841 Gm16204 - - 8|8 A4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo 619973 Gm12538 - - 4|4 B3 predicted gene 12538 pseudo 61831 D2Mit321 - - 2 24.19 cM DNA segment, Chr 2, Massachusetts Institute of Technology 321 unknown 258858 Mm.354727 NM_146859 ENSMUSG00000051952 Olfr371 MOR141-3 - 8|8 C3 olfactory receptor 371 protein-coding 110162 Tctex6 Tctex-6 - - t-complex testis-expressed 6 protein-coding 381622 Mm.226878 NM_207657 ENSMUSG00000051940 5031410I06Rik - - 5|5 B1 RIKEN cDNA 5031410I06 gene protein-coding 101100 Mm.388573 NM_133923 ENSMUSG00000030276 Ttll3 4833441J24Rik|AI450050 - 6|6 E3 tubulin tyrosine ligase-like family, member 3 protein-coding 105243534 XR_871274 Gm39427 - - 9 F2|9 predicted gene, 39427 ncRNA 61237 D1Mit270 - - 1 77.05 cM DNA segment, Chr 1, Massachusetts Institute of Technology 270 unknown 100416877 Gm14833 - - X|X D glutamate dehydrogenase 1 pseudogene pseudo 213019 Mm.283968 NM_145978 ENSMUSG00000022090 Pdlim2 4732462F18Rik|Slim - 14|14 D2 PDZ and LIM domain 2 protein-coding 62659 D15Mit108 - - 15 47.79 cM DNA segment, Chr 15, Massachusetts Institute of Technology 108 unknown 102634128 Mm.109687 XR_380115 ENSMUSG00000109160 4930598N05Rik - - 10|10 A1 RIKEN cDNA 4930598N05 gene ncRNA 62161 D14Mit59 - - 14 24.47 cM DNA segment, Chr 14, Massachusetts Institute of Technology 59 unknown 64297 Mm.103439 NM_022420 ENSMUSG00000008734 Gprc5b AW125761|Raig2 - 7|7 F2 G protein-coupled receptor, family C, group 5, member B protein-coding 108511972 Zfpm1r12 - - 8 E1 Zfpm1R12 erythroid cis-regulatory module biological-region 21886 Mm.38608 NM_019725 ENSMUSG00000034771 Tle2 Grg2|mKIAA4188 - 10|10 C1 transducin-like enhancer of split 2 protein-coding 72481 Mm.279818 NR_015470 ENSMUSG00000079671 2610203C22Rik 2310007M24Rik - 1|1 A2 RIKEN cDNA 2610203C22 gene ncRNA 641254 Gm13351 - - 2|2 A3 predicted gene 13351 pseudo 100526477 NR_037241 ENSMUSG00000092751 Mir3080 mmu-mir-3080 - 15 E1|15 38.88 cM microRNA 3080 ncRNA 62009 D6Mit374a D6Mit374 - 6 64.6 cM DNA segment, Chr 6, Massachusetts Institute of Technology 374a unknown 108168044 LOC108168044 - - 13 B3 zinc finger protein 595-like pseudo 61892 D1Mit433 - - 1 21.11 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 433 unknown 547416 Cycl - - 11 B1.3|11 31.96 cM cyclin-like pseudo 100418158 Gm19041 - - 16|16 C1.1 adaptor-related protein complex 3, sigma 1 subunit pseudogene pseudo 100416462 Gm18125 - - 7|7 A2 MHC I like leukocyte 2 pseudogene pseudo 732530 Gt(pU21)105Imeg Ayu21-105|GtAyu21-105 - - gene trap 105, Institute of Molecular Embryology and Genetics unknown 319804 Mm.237888 NM_177005 ENSMUSG00000049971 Glt1d1 5730455A04Rik - 5|5 G1.2 glycosyltransferase 1 domain containing 1 protein-coding 109010 Mm.439478 2010010I01Rik - - 6|6 RIKEN cDNA 2010010I01 gene protein-coding 66609 Mm.109823 NM_026994 ENSMUSG00000058240 Cryzl1 2210407J23Rik|2410006O11Rik|QOH-1 - 16|16 C4 crystallin, zeta (quinone reductase)-like 1 protein-coding 234594 Mm.259220 NM_153164 ENSMUSG00000036550 Cnot1 6030411K04Rik|AA815922|D830048B13 - 8|8 D1 CCR4-NOT transcription complex, subunit 1 protein-coding 22337 Mm.245084 NM_009504 ENSMUSG00000022479 Vdr Nr1i1 - 15|15 F1 vitamin D (1,25-dihydroxyvitamin D3) receptor protein-coding 71813 2610028J07Rik - - - RIKEN cDNA 2610028J07 gene protein-coding 105245440 Mm.122634 XR_872928 ENSMUSG00000113136 LOC105245440 - - 12 E uncharacterized LOC105245440 ncRNA 493039 Cd8ts3 - - 15 19.26 cM CD8 T cell subset 3 unknown 111823 Iapls1-72 - - - intracisternal A particle, lymphocyte specific 1-72 other 102633908 XR_386420 Gm31621 - - 18 E4|18 predicted gene, 31621 ncRNA 359861 DXMgc89 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 89 unknown 111569 Xmv33 Xmv-33 - - xenotropic murine leukemia virus 33 other 23816 B437A17T - - - DNA segment B437-A-17-T unknown 12695 Mm.90218 NM_007704 ENSMUSG00000061859 Patj Cipp|Inadl - 4|4 C6 PATJ, crumbs cell polarity complex component protein-coding 74036 4632409D06Rik - - 5|5 RIKEN cDNA 4632409D06 gene protein-coding 102636284 LOC102636284 - - 6 F3 mitochondrial intermembrane space import and assembly protein 40 pseudogene pseudo 433667 Mm.265806 NM_001013806 ENSMUSG00000039988 Ankrd13c AI505652|AU022220 - 3|3 H4 ankyrin repeat domain 13c protein-coding 100504563 Gm13992 - - 2|2 55.48 cM predicted gene 13992 pseudo 320627 A330053N03Rik - - 16|16 RIKEN cDNA A330053N03 gene protein-coding 60746 D1Mit86 - - 1 49.26 cM DNA segment, Chr 1, Massachusetts Institute of Technology 86 unknown 100101412 Pbwg1.6 - - - postnatal body weight growth 1.6 unknown 66661 Mm.296976 NM_025691 ENSMUSG00000036323 Srp72 5730576P14Rik|72kDa|AI132477|BC019196|C77589 - 5|5 C3.3 signal recognition particle 72 protein-coding 52512 Mm.483998 NR_105025 ENSMUSG00000114350 D14Ertd670e - - 14 A3|14 DNA segment, Chr 14, ERATO Doi 670, expressed ncRNA 109280154 LOC109280154 Mm1400 - - VISTA enhancer mm1400 biological-region 54204 Mm.18 NM_017461 ENSMUSG00000000486 Sept1 Diff6|Pnutl3 - 7|7 F3 septin 1 protein-coding 71178 4933415b22rik - - 5|5 RIKEN cDNA 4933415B22 gene unknown 19329 Mm.279780 NM_008998 ENSMUSG00000026304 Rab17 AW413472 - 1 D|1 45.84 cM RAB17, member RAS oncogene family protein-coding 114778 Actd3 - - 5 55.39 cM activity-distance traveled 3 unknown 69454 Mm.44194 NM_027085 ENSMUSG00000015093 Clic3 2300003G24Rik - 2|2 A3 chloride intracellular channel 3 protein-coding 73020 2900073C17Rik - - 8|8 B1.2 RIKEN cDNA 2900073C17 gene protein-coding 100038354 Mm.474049 G730003C15Rik - - - RIKEN cDNA G730003C15 gene unknown 668801 Gm9368 EG668801 - 12|12 A3 ribosomal protein SA pseudogene pseudo 108168400 XR_001782548 Gm46640 - - 18 B1|18 predicted gene, 46640 ncRNA 105244298 Gm14042 - - 2|2 63.22 cM predicted gene 14042 pseudo 102465600 NR_105959 ENSMUSG00000098363 Mir6993 Gm27642|mmu-mir-6993 - 19|19 A microRNA 6993 ncRNA 100036037 Bmc11 - - - bone mineral content 11 unknown 328087 D930001B02 - - 12|12 B1 uncharacterized protein D930001B02 protein-coding 321001 Mm.125555 C230021G24Rik B230207K17Rik - 10|10 RIKEN cDNA C230021G24 gene unknown 62676 D15Mit160 - - 15 58.2 cM DNA segment, Chr 15, Massachusetts Institute of Technology 160 unknown 110251 Papg1 - - 4 47.21 cM pulmonary adenoma progression 1 protein-coding 67171 Mm.290488 NM_026013 ENSMUSG00000027900 Dram2 2010305N14Rik|2610318G18Rik|AI647667|Tmem77 - 3|3 F2.3 DNA-damage regulated autophagy modulator 2 protein-coding 12336 Mm.439782 NM_009795 ENSMUSG00000001794 Capns1 Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e - 7 B1|7 17.31 cM calpain, small subunit 1 protein-coding 100036224 Gbvq1 - - 5 30.52 cM gallstone bladder volume QTL 1 unknown 12675 Mm.3996 NM_007700 ENSMUSG00000025199 Chuk AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA - 19 C3|19 36.71 cM conserved helix-loop-helix ubiquitous kinase protein-coding 74591 Mm.159251 NM_175210 ENSMUSG00000050296 Abca12 4832428G11Rik|4833417A11Rik - 1|1 C3 ATP-binding cassette, sub-family A (ABC1), member 12 protein-coding 102633347 Mm.367274 XR_378328 Gm26708 - - 7 D3|7 predicted gene, 26708 ncRNA 19214 Mm.5105 NM_008962 ENSMUSG00000071489 Ptgdr DP|PGD - 14 C1|14 22.59 cM prostaglandin D receptor protein-coding 117114 D12Pgn4 - - - DNA segment, Chr 12, Paigen 4 unknown 76679 Mm.463001 5330417H12Rik - - 7|7 E3 RIKEN cDNA 5330417H12 gene unknown 105245797 XR_874750 Gm41188 - - 14 D1|14 predicted gene, 41188 ncRNA 100417425 Gm18606 - - 18|18 C RAD51 homolog c pseudogene pseudo 100126079 Mtgq2 Bwnd2wk1|Bwnd4wk2|Bwnd5wk2|Bwnd6wk2 - - multiple trait growth QTL 2 unknown 105096 AA517651 - - - expressed sequence AA517651 unknown 109506 Alcp23 - - 19 29.06 cM alcohol preference locus 23, male specific unknown 74123 Mm.240062 NM_028767 ENSMUSG00000023991 Foxp4 1200010K03Rik|2310007G05Rik|mFKHLA - 17|17 C forkhead box P4 protein-coding 100038852 Gm1974 - - 14 D3|14 predicted gene 1974 ncRNA 108084 Pphc2 Phc-2 - - polyunsaturated fat induced postprandial hypercholesterolemia protein-coding 27552 D5Buc7 337O19.T7 - 5 37.4 cM DNA segment, Chr 5, Bucan 7 unknown 62712 D17Mit160 - - 17 41.87 cM DNA segment, Chr 17, Massachusetts Institute of Technology 160 unknown 320200 A830080L01Rik - - 19|19 RIKEN cDNA A830080L01 gene protein-coding 13007 Mm.196484 NM_007791 ENSMUSG00000026421 Csrp1 AA408841|AA959891|AW545626|CRP1|Csrp - 1|1 E4 cysteine and glycine-rich protein 1 protein-coding 102637205 XR_376157 Gm34078 Gm42709 - 3 H2|3 predicted gene, 34078 ncRNA 100041108 Mm.24764 NR_038347 ENSMUSG00000105153 Gm3143 - - 3 A3|3 predicted gene 3143 ncRNA 13646 Mm.5193 NM_010114 ENSMUSG00000060177 Klk1b22 EGF-BP A|Egfbp-1|Egfbp1|Klk22|mGk-22 - 7 B3|7 28.61 cM kallikrein 1-related peptidase b22 protein-coding 100124561 Vmn2r-ps65 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 65 pseudo 105246817 XR_879160 Gm42041 - - 8 D3|8 predicted gene, 42041 ncRNA 320873 Mm.117794 NM_009865 ENSMUSG00000022321 Cdh10 A830016G23Rik|C030003B10Rik|C030011H18Rik - 15 A2|15 8.2 cM cadherin 10 protein-coding 100503302 Rps19-ps6 Gm19633 - 12 F1|12 60.86 cM ribosomal protein S19, pseudogene 6 pseudo 102635657 Gm32941 - - 13|13 predicted gene, 32941 ncRNA 492850 Sluc15 - - - susceptibility to lung cancer 15 unknown 105246687 XR_001779349 Gm41935 - - 1 E2.3|1 predicted gene, 41935 ncRNA 100503535 Gm11492 - - - uncharacterized protein C17orf47 homolog protein-coding 102643147 XR_001779325 Gm38661 - - 9 F4|9 predicted gene, 38661 ncRNA 20740 Mm.204969 NM_001076554 ENSMUSG00000057738 Sptan1 2610027H02Rik|Spna-2|Spna2 - 2 B|2 20.93 cM spectrin alpha, non-erythrocytic 1 protein-coding 100039675 Gm20811 - - Y|Y predicted gene, 20811 pseudo 257844 Olfr540-ps1 EG257844|GA_x5J8B7W3EKE-4574231-4574913|Gm5029 - 7 F4|7 olfactory receptor 540, pseudogene 1 pseudo 66292 Mm.24108 NM_078479 ENSMUSG00000054312 Mrps21 1810031B19Rik|S21mt - 3|3 F2.1 mitochondrial ribosomal protein S21 protein-coding 21203 T(5;12)31H T31H - - reciprocal translocation, Chr 5 and 12, Harwell 31 other 60903 D8Mit65 - - 8 23.89 cM DNA segment, Chr 8, Massachusetts Institute of Technology 65 unknown 71620 Mm.5307 9130016M20Rik - - 19|19 RIKEN cDNA 9130016M20 gene protein-coding 620521 Gm6159 EG620521 - 1|1 C4 heterogeneous nuclear ribonucleoprotein R pseudogene pseudo 383818 Gm5272 EG383818 - 3|3 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 231946 Mm.35199 NM_172727 ENSMUSG00000047115 Fam221a D330028D13Rik - 6|6 B2.3 family with sequence similarity 221, member A protein-coding 111868 Iap3ra1 - - - intracisternal A-type particle, U3 region, SINE repeat a-1 other 78030 4930527L19Rik - - 1|1 RIKEN cDNA 4930527L19 gene protein-coding 61098 D1Mit489 - - 1 47.47 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 489 unknown 105244398 XR_001783596 LOC105244398 - - 2 H4 uncharacterized LOC105244398 ncRNA 19294 Mm.4341 NM_008990 ENSMUSG00000062300 Nectin2 AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2 - 7 A3|7 9.94 cM nectin cell adhesion molecule 2 protein-coding 319574 Mm.271989 NR_015497 ENSMUSG00000110656 Gm20735 - - 8|8 E1 predicted gene, 20735 ncRNA 11304 Mm.3918 NM_007378 ENSMUSG00000028125 Abca4 AW050280|Abc10|Abcr|D430003I15Rik|RmP - 3 G1|3 52.94 cM ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 112053 Mobq2 Mob2 - 6 6.68 cM multigenic obesity QTL 2 unknown 102467568 n-TKctt19 n-Tk19 - X F1|X nuclear encoded tRNA lysine 19 (anticodon CTT) tRNA 73589 1700101I19Rik - - 1|1 RIKEN cDNA 1700101I19 gene protein-coding 18162 Mm.25259 NM_008728 ENSMUSG00000022206 Npr3 ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri - 15 A1|15 5.83 cM natriuretic peptide receptor 3 protein-coding 105244248 Gm39891 - - 2|2 predicted gene, 39891 ncRNA 105242710 Gm38853 - - 6|6 predicted gene, 38853 ncRNA 64252 Snord116l9 Gm22173|Pwcr1l9 - - small nucleolar RNA, C/D box 116-like 9 protein-coding 61200 D1Mit127 - - 1 36.14 cM DNA segment, Chr 1, Massachusetts Institute of Technology 127 unknown 105243500 Gm39402 - - 11|11 predicted gene, 39402 ncRNA 100039246 Mm.425864 NM_001270503 ENSMUSG00000072674 Plac9b Gm10393 - 14 A3|14 placenta specific 9b protein-coding 104378 Srlv1 Srlv-1 - - susceptibility to RadLV 1 protein-coding 21291 T(In1;5)44H T44H - - reciprocal translocation, inverted Chr 1 and Chr 5, Harwell 44 other 100034928 Scfq4 - - - subcutaneous fat pad weight QTL 4 unknown 102639685 XR_385037 Gm35939 - - 16 C3.3|16 predicted gene, 35939 ncRNA 12209 Mm.10687 NM_009766 ENSMUSG00000031130 Brs3 BRS-3 - X|X A6 bombesin-like receptor 3 protein-coding 195333 Mm.463003 NM_029469 ENSMUSG00000022738 Gsc2 4930568H22Rik|GSC-2|Gscl - 16 A3|16 11.1 cM goosecoid homebox 2 protein-coding 665181 Gm11964 - - 11|11 A1 predicted gene 11964 pseudo 192174 Mm.273081 NM_203507 ENSMUSG00000031568 Rwdd4a BC016198|Gm1942|Rwdd4 - 8|8 B1.1 RWD domain containing 4A protein-coding 100217443 NR_028540 Snord12 MBII-99 - 2 H3|2 small nucleolar RNA, C/D box 12 snoRNA 109611590 LOC109611590 - - - Runx2 P1 promoter region biological-region 102639672 XR_392677 LOC102639672 CH36-322J2.1|CH36-323H8.1 - - uncharacterized LOC102639672 ncRNA 667524 Gm8682 EG667524 - X|X F4 cofilin 1, non-muscle pseudogene pseudo 360123 D17Brg120 - - - DNA segment, Chr 17, David E. Bergstrom 120 unknown 85077 D7Mit91 - - 7 33.88 cM DNA segment, Chr 7, Massachusetts Institute of Technology 91 unknown 78658 Mm.251777 NM_178113 ENSMUSG00000035024 Ncapd3 2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056 - 9|9 A4 non-SMC condensin II complex, subunit D3 protein-coding 225745 Mm.39293 NM_146089 ENSMUSG00000041840 Haus1 BC024400|Ccdc5|HEI-C - 18|18 E3 HAUS augmin-like complex, subunit 1 protein-coding 108167669 XR_001779250 Gm46124 - - 9 E2|9 predicted gene, 46124 ncRNA 238037 Mm.146087 NM_173416 ENSMUSG00000051721 Wdcp A430092C04 - 12|12 A1.1 WD repeat and coiled coil containing protein-coding 360004 AF426179 - - - DNA sequence AF426179 unknown 170936 Mm.151546 NM_178364 ENSMUSG00000021514 Zfp369 B930030B22Rik|D230020H11Rik|NRIF2 - 13|13 B3 zinc finger protein 369 protein-coding 77820 A930028O11Rik - - 3|3 RIKEN cDNA A930028O11 gene protein-coding 70917 Mm.491036 NR_045501 ENSMUSG00000114790 4921509O07Rik - - 13|13 D2.2 RIKEN cDNA 4921509O07 gene ncRNA 258529 Mm.377555 NM_146536 ENSMUSG00000070438 Olfr313 MOR222-2 - 11|11 B1.3 olfactory receptor 313 protein-coding 62962 D13Mit291 - - 13 62.07 cM DNA Segment, Chr 13, Massachusetts Institute of Technology 291 unknown 239319 Mm.31252 NM_001163138 ENSMUSG00000041849 Card6 D730008L15 - 15|15 A1 caspase recruitment domain family, member 6 protein-coding 72235 Mm.251420 1700021J08Rik - - 4|4 RIKEN cDNA 1700021J08 gene protein-coding 238266 Mm.311393 NM_172804 ENSMUSG00000044912 Syt16 6430703N11|Strep14|Syt14l|syt14r - 12|12 C3 synaptotagmin XVI protein-coding 58541 D13Die40 - - 13 52.91 cM DNA segment, Chr 13, Dietrich 40 unknown 100035613 Nba3 - - 7 48.36 cM New Zealand Black autoimmunity 3 unknown 73181 Mm.27908 NM_023699 ENSMUSG00000023411 Nfatc4 3110041H08Rik|AW107667|AW546455|Nfat3 - 14|14 C3 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4 protein-coding 654354 Gm13443 - - 2|2 B glyoxalase 1 pseudogene pseudo 30806 Mm.100582 NM_013906 ENSMUSG00000031994 Adamts8 METH-2|METH2 - 9 A4|9 16.49 cM a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 8 protein-coding 474156 Mm.328890 NM_001005916 ENSMUSG00000079605 Zbtb9 3930402F13Rik - 17|17 A3.3 zinc finger and BTB domain containing 9 protein-coding 73420 Mm.157746 NM_028536 ENSMUSG00000031971 Ccsap 1700054N08Rik|AI853424 - 8|8 E2 centriole, cilia and spindle associated protein protein-coding 629595 XR_873020 Gm6988 EG629595 - 12|12 F1 predicted gene 6988 pseudo 19377 Mm.296366 NM_009021 ENSMUSG00000062115 Rai1 Gt1 - 11|11 B1.3-B2 retinoic acid induced 1 protein-coding 54151 Mm.247752 NM_019396 ENSMUSG00000053929 Cyhr1 1110031M01Rik|AU042374|Chrp - 15|15 D3 cysteine and histidine rich 1 protein-coding 237847 Mm.82661 NM_177708 ENSMUSG00000045287 Rtn4rl1 Ngr3|Ngrh2|Ngrl2 - 11|11 B5 reticulon 4 receptor-like 1 protein-coding 20909 Mm.24867 NM_009294 ENSMUSG00000030805 Stx4a Stx4|Syn-4|Syn4 - 7|7 F3 syntaxin 4A (placental) protein-coding 108168067 XR_001780869 Gm46403 - - 13 A3.1|13 predicted gene, 46403 protein-coding 68859 Mm.477488 NM_001033144 ENSMUSG00000078350 Smim1 0610011H04Rik|1190007F08Rik|2700009I11Rik - 4|4 E2 small integral membrane protein 1 protein-coding 692184 Igkv17-134 Gm17319|Igk-Vk20(294A9) - 6|6 C1 immunoglobulin kappa chain variable 17-134 pseudo 100043788 Gm14211 - - 2|2 F3 predicted gene 14211 protein-coding 320424 B130011K05Rik - - 11|11 RIKEN cDNA B130011K05 gene protein-coding 791362 Mm.17857 C130032M10Rik - - - RIKEN cDNA C130032M10 gene protein-coding 100125755 Abd1 - - - autoimmune biliary disease 1 unknown 384452 Mm.347883 NM_001007472 ENSMUSG00000068302 Noto Flh|MmNot|Not|tc - 6 C3|6 37.44 cM notochord homeobox protein-coding 67473 Mm.100741 NM_026183 ENSMUSG00000010122 Slc47a1 1300013J15Rik|AI036982|MATE1|mMATE1 - 11|11 B2 solute carrier family 47, member 1 protein-coding 15939 Mm.12246 NM_010500 ENSMUSG00000056708 Ier5 - - 1 G3|1 66.45 cM immediate early response 5 protein-coding 108169194 Gm43309 - - 6 C3|6 predicted gene 43309 pseudo 105247109 XM_011250139 Gm42267 - - 4 A5|4 predicted gene, 42267 protein-coding 105244426 XM_011239967 Gm40035 - - 2 H4|2 predicted gene, 40035 protein-coding 100038710 Mm.490595 Gm10748 - - 3 A1|3 predicted gene 10748 unknown 100037263 Mm.206159 4921516A02Rik - - - RIKEN cDNA 4921516A02 gene unknown 73234 Mm.7310 NM_028473 ENSMUSG00000026258 3110079O15Rik Snorc - 1|1 D RIKEN cDNA 3110079O15 gene protein-coding 102640392 XR_877310 Gm36461 - - 18 B2|18 predicted gene, 36461 ncRNA 140488 Mm.281018 NM_023670 ENSMUSG00000029814 Igf2bp3 2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3 - 6 B2.3|6 23.82 cM insulin-like growth factor 2 mRNA binding protein 3 protein-coding 209012 Mm.371804 NM_177589 ENSMUSG00000040936 Ulk4 4932415A06Rik|A730098P15 - 9|9 F4 unc-51-like kinase 4 protein-coding 667234 Mup-ps9 Gm13515 - 4|4 B3 major urinary protein, pseudogene 9 pseudo 227699 Mm.330119 NM_198304 ENSMUSG00000052533 Nup188 BC025526|U89435|mKIAA0169 - 2|2 B nucleoporin 188 protein-coding 62497 D10Mit144 - - 10 43.78 cM DNA segment, Chr 10, Massachusetts Institute of Technology 144 unknown 102636315 Gm33417 - - 19|19 predicted gene, 33417 ncRNA 102638821 Gm35296 - - 10|10 predicted gene, 35296 pseudo 102637816 Mm.458052 Gm34530 - - 11|11 predicted gene, 34530 ncRNA 100036472 Vmmt3 - - - vertebral morphology and mechanical traits 3 unknown 100040414 Rpl30-ps6 Gm10200 - 1|1 C5 ribosomal protein L30, pseudogene 6 pseudo 546055 Mm.334503 NM_001025380 ENSMUSG00000054033 Adam39 1700056P18Rik - 8|8 A4 a disintegrin and metallopeptidase domain 39 protein-coding 27624 D11Moh4 - - - DNA segment, Chr 11, KL Mohlke 4 unknown 102631504 XR_380036 Gm29826 - - 10 A1|10 predicted gene, 29826 ncRNA 102636843 XR_379997 Gm33800 - - 9 F4|9 predicted gene, 33800 ncRNA 105246022 Gm41384 - - 15|15 predicted gene, 41384 ncRNA 628012 XM_001474528 Gm16441 EG666950 - X|X A7.2 predicted pseudogene 16441 protein-coding 66166 Mm.24006 NM_025393 ENSMUSG00000042306 S100a14 1110013O05Rik|S100a15|S114 - 3|3 F1 S100 calcium binding protein A14 protein-coding 625310 Gm6575 EG625310 - 13|13 A2 ZW10 interactor pseudogene pseudo 27940 D5Nds1 - - - DNA segment, Chr 5, Nuffield Department of Surgery 1 unknown 102467544 n-TIaat7 n-Ti7 - 13 A3.1|13 nuclear encoded tRNA isoleucine 7 (anticodon AAT) tRNA 109450 Hpic1 - - 9 46.58 cM haloperidol-induced catalepsy 1 unknown 108169010 XM_017320556 ENSMUSG00000095779 LOC108169010 - - 4 A5 protein FAM205A-like protein-coding 100504626 Mm.440236 NR_152259 Gm16364 Gm16365 - 10 B1|10 20.78 cM predicted gene 16364 ncRNA 664973 Gm11892 - - 4|4 A3 tubulin, beta 5 pseudogene pseudo 73134 Mm.440818 3110023J12Rik - - 2|2 RIKEN cDNA 3110023J12 gene protein-coding 102632596 Gm30629 - - 6|6 predicted gene, 30629 ncRNA 100301915 Gm16511 - - X|X D DMRT-like family pseudogene pseudo 75894 Mm.384805 NM_029475 ENSMUSG00000027259 Adal 4930578F03Rik - 2|2 E5 adenosine deaminase-like protein-coding 80860 Mm.37308 NM_031871 ENSMUSG00000017747 Ghdc D11Lgp1e - 11 D|11 63.6 cM GH3 domain containing protein-coding 100039459 Gm12691 - - 4|4 C6 predicted gene 12691 pseudo 77883 Mm.113311 NM_183126 ENSMUSG00000051361 6030498E09Rik - - X|X A3.3 RIKEN cDNA 6030498E09 gene protein-coding 102638561 Gm35095 - - 9|9 predicted gene, 35095 protein-coding 27649 D0Hgu15 - - - DNA segment, Human Genetics Unit 15 unknown 330427 Mm.426356 NR_077223 ENSMUSG00000107879 9330102E08Rik - - 6|6 F3 RIKEN cDNA 9330102E08 gene ncRNA 99520 Mm.297801 AA589608 - - - expressed sequence AA589608 unknown 102639011 Gm35432 - - 2|2 predicted gene, 35432 ncRNA 56571 65M5F9R - - - DNA segment, 65M5F9R unknown 27825 567C18F - - - DNA segment, 567C18F (Research Genetics) unknown 17129 Mm.272920 NM_008541 ENSMUSG00000021540 Smad5 1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP - 13 B1|13 30.12 cM SMAD family member 5 protein-coding 66521 Mm.28528 NM_025614 ENSMUSG00000019782 Rwdd1 0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1 - 10|10 B1 RWD domain containing 1 protein-coding 61061 D4Mit264 - - 4 4.14 cM DNA segment, Chr 4, Massachusetts Institute of Technology 264 unknown 102632797 Gm29249 - - Y|Y predicted gene 29249 pseudo 114644 Mm.250738 NM_054055 ENSMUSG00000018459 Slc13a3 NaDC-3|NaDC3|SDCT2 - 2|2 H3 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 protein-coding 74522 Mm.139127 NM_198162 ENSMUSG00000034543 Morc2a 8430403M08Rik|Zcwcc1 - 11|11 A1 microrchidia 2A protein-coding 100035994 Chlq12 - - - circulating hormone level QTL 12 unknown 69065 Mm.35083 NM_026929 ENSMUSG00000027313 Chac1 1810008K03Rik - 2|2 E5 ChaC, cation transport regulator 1 protein-coding 57271 Mm.88824 NM_020514 ENSMUSG00000035626 Olfr1509 MOR244-3|Mor83|Or83 - 14|14 C2 olfactory receptor 1509 protein-coding 100035810 Bpq12 - - - blood pressure QTL 12 unknown 110443 31.MMHAP64FLC4 ESTM57 - - DNA segment, 31.MMHAP64FLC4 protein-coding 102634918 XR_373298 Gm38471 - - 1 B|1 predicted gene, 38471 ncRNA 110120431 LOC110120431 - - - VISTA enhancer mm1099 biological-region 627273 Trav7d-5 Gm13971 - 14|14 C2 T cell receptor alpha variable 7D-5 other 52235 D9Ertd305e - - 9 46.58 cM DNA segment, Chr 9, ERATO Doi 305, expressed unknown 100418017 Gm20589 Cct3-3p - 6|6 E3 chaperonin containing Tcp1, subunit 3 (gamma) pseudogene pseudo 93715 Mm.247203 NM_033590 ENSMUSG00000103472 Pcdhga7 - - 18|18 B3 protocadherin gamma subfamily A, 7 protein-coding 102632600 Gm30631 - - 11 B1.3|11 predicted gene, 30631 pseudo 102640302 XR_377152 Gm36403 - - 5 G2|5 predicted gene, 36403 ncRNA 75106 Mm.1441 NM_029170 4930519F16Rik Ppnx - X D|X 45.97 cM RIKEN cDNA 4930519F16 gene protein-coding 69941 Mm.69044 NR_038009 ENSMUSG00000087213 2810408I11Rik - - 1|1 C2 RIKEN cDNA 2810408I11 gene ncRNA 12153 Mm.27757 NM_009755 ENSMUSG00000022098 Bmp1 Pcp|Tld - 14 D2|14 36.32 cM bone morphogenetic protein 1 protein-coding 62178 D15Mit11 - - 15 4.39 cM DNA segment, Chr 15, Massachusetts Institute of Technology 11 unknown 100035376 Bfsz1 - - - barrel field size 1 unknown 19035 Mm.335249 NM_011149 ENSMUSG00000032383 Ppib AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b - 9|9 C peptidylprolyl isomerase B protein-coding 433686 Gm5550 EG433686 - 3|3 H4 predicted gene 5550 pseudo 13490 Mm.439735 NM_007877 ENSMUSG00000022705 Drd3 D3R - 16 B4|16 28.44 cM dopamine receptor D3 protein-coding 100312480 Vmn1r-ps41 - - 7 A1|7 3.27 cM vomeronasal 1 receptor, pseudogene 41 pseudo 626534 Mm.482239 NR_033599 Gm6682 EG626534 - 12|12 A1.1 tubulin, alpha 1C pseudogene pseudo 625050 Vmn1r-ps32 EG625050|Gm6547 - 6|6 D1 vomeronasal 1 receptor, pseudogene 32 pseudo 108168684 XM_017318917 LOC108168684 - - - PRAME family member 8-like protein-coding 102639449 XR_868069 Gm35761 - - 4 D2.1|4 predicted gene, 35761 ncRNA 18431 Mm.137052 NM_021879 ENSMUSG00000030450 Oca2 D7H15S12|D7Icr28RN|D7Nic1|p|p - 7 B5|7 33.44 cM oculocutaneous albinism II protein-coding 102635109 XR_377060 Gm32529 - - 5 G1.1|5 predicted gene, 32529 ncRNA 102638618 Gm35141 - - 1|1 predicted gene, 35141 ncRNA 72425 Mm.425091 NM_024254 ENSMUSG00000027132 Katnbl1 2410042D21Rik|AA166487|AA473307|AI467442 - 2|2 E3 katanin p80 subunit B like 1 protein-coding 109280103 LOC109280103 Mm1313 - - VISTA enhancer mm1313 biological-region 330059 A430017K17 - - 5|5 B1 uncharacterized protein A430017K17 protein-coding 100041239 Mm.393769 Gm3225 - - 12 C3|12 predicted gene 3225 protein-coding 101280 Mm.393694 AU046084 - - - expressed sequence AU046084 protein-coding 546080 Gm5911 EG546080 - 8|8 C2 predicted gene 5911 pseudo 111897 Xltr9 - - - xenotropic long terminal repeat-containing proviral locus 9 other 100310753 Mm.484829 A430073D23Rik - - - RIKEN cDNA A430073D23 gene protein-coding 108167840 Gm37450 - - 1 H3|1 40S ribosomal protein S29 pseudogene pseudo 102635653 Gm29573 - - Y|Y predicted gene 29573 protein-coding 61226 D1Mit231 - - 1 6.5 cM DNA segment, Chr 1, Massachusetts Institute of Technology 231 unknown 100040711 Gm2921 - - 8 B2|8 predicted gene 2921 ncRNA 100038405 Mm.454516 Gm10827 - - - predicted gene 10827 unknown 16704 Mm.3503 NM_010676 ENSMUSG00000051802 Krtap19-5 Krtap8-2 - 16|16 C3.3 keratin associated protein 19-5 protein-coding 110040 Mis2 - - - Mo-MuLV integration site 2 protein-coding 19018 Mm.389346 NM_020255 ENSMUSG00000046229 Scand1 2310003H23Rik|Leap1|PGC-2|Ppargc2 - 2|2 H1 SCAN domain-containing 1 protein-coding 269994 Mm.39599 NM_001101488 ENSMUSG00000046182 Gsg1l AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l - 7|7 F3 GSG1-like protein-coding 109369 Obq6 - - - obesity QTL 6 unknown 100036444 Stzid Idd29 - 11 54.95 cM streptozotocin induced diabetes susceptibility unknown 100042150 Mm.380390 NM_001167891 ENSMUSG00000060275 Nrg2 Don1|NTAK - 18 B2|18 19.38 cM neuregulin 2 protein-coding 433739 Gm12799 - - 4|4 C6 RNA binding motif protein 10 pseudogene pseudo 105242886 XR_881904 Gm38972 - - 7 A3|7 predicted gene, 38972 ncRNA 18223 Mm.458153 NM_010950 ENSMUSG00000063160 Numbl nbl - 7|7 A3 numb-like protein-coding 98019 C79999 - - - expressed sequence C79999 unknown 85210 D13Mit131 - - 13 67.21 cM DNA segment, Chr 13, Massachusetts Institute of Technology 131 unknown 53420 Mm.358663 NM_016908 ENSMUSG00000004961 Syt5 SytV - 7|7 A1 synaptotagmin V protein-coding 18685 Mm.385178 NM_013629 ENSMUSG00000058388 Phtf1 AU041898|AW049785|Phft|Phtf - 3|3 F2.2 putative homeodomain transcription factor 1 protein-coding 102633764 Gm31514 - - 12|12 predicted gene, 31514 ncRNA 102638912 XR_377955 Gm35359 - - 6 E2|6 predicted gene, 35359 ncRNA 106907 Mm.385113 AI450907 - - - expressed sequence AI450907 unknown 56205 Mm.241365 NM_019561 ENSMUSG00000038619 Ensa 1700020C18Rik|2610007F17Rik|AI451924 - 3|3 F2.1 endosulfine alpha protein-coding 105246690 XR_878466 Gm41938 - - 1 E2.3|1 predicted gene, 41938 ncRNA 108511963 Vav2r7 - - 2 A3 Vav2R7 erythroid cis-regulatory module biological-region 100043265 Gm4325 - - 17|17 B1 frataxin pseudogene pseudo 74426 Mm.159197 NM_001256158 ENSMUSG00000025961 4933402D24Rik - - 1|1 C2 RIKEN cDNA 4933402D24 gene protein-coding 100418108 Gm15368 - - 1|1 D predicted gene 15368 pseudo 100041986 Gm3609 - - 13 B3|13 predicted gene 3609 pseudo 100503729 Gm19859 - - 15|15 34.19 cM predicted gene, 19859 ncRNA 75309 Mm.159497 NR_040752 ENSMUSG00000104004 4930565D16Rik - - 3|3 F1 RIKEN cDNA 4930565D16 gene ncRNA 77876 Mm.257120 6030442K20Rik - - 1|1 RIKEN cDNA 6030442K20 gene protein-coding 102640172 LOC102640172 - - 7 F2 mitochondrial import receptor subunit TOM7 homolog pseudogene pseudo 100126081 Mtgq4 Bwnd3wk2|Bwnd4wk6|Bwnd5wk6|Bwnd6wk5 - - multiple trait growth QTL 4 unknown 100036372 Appd1 - - - APP associated premature death 1 unknown 668071 Gm8960 EG668071 - 10|10 D2 ribosomal protein S3A pseudogene pseudo 11895 Asp3 asp-3 - - audiogenic seizure prone 3 unknown 57250 Mm.377129 NM_147074 ENSMUSG00000073926 Olfr653 MOR33-1|Ors19 - 7|7 E3 olfactory receptor 653 protein-coding 104930 Mm.36006 AU015738 - - - expressed sequence AU015738 unknown 73886 Mm.240668 4930431P19Rik - - 7|7 E3 RIKEN cDNA 4930431P19 gene unknown 61503 D8Mit100 - - 8 29.7 cM DNA segment, Chr 8, Massachusetts Institute of Technology 100 unknown 319637 NM_176967 A430072C10Rik - - 3|3 G3 RIKEN cDNA A430072C10 gene unknown 216459 Mm.291688 NM_172259 ENSMUSG00000039824 Myl6b 5730437E04Rik|BC037527|MLC1SA - 10|10 D3 myosin, light polypeptide 6B protein-coding 14455 Mm.270065 NR_002840 ENSMUSG00000053332 Gas5 Gas-5|Mir5117|Snhg2 - 1|1 H2.1 growth arrest specific 5 ncRNA 102637192 XM_006523123 ENSMUSG00000059113 LOC102637192 - - 16 C3.3 keratin-associated protein 20-2-like protein-coding 51914 D3Ertd108e - - - DNA segment, Chr 3, ERATO Doi 108, expressed unknown 259155 Olfr1528-ps1 MOR105-7P - 1|1 H3 olfactory receptor 1528, pseudogene 1 pseudo 13411 Mm.390540 NM_010060 ENSMUSG00000018581 Dnah11 Dnahc11|avc4|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd - 12 F2|12 63.25 cM dynein, axonemal, heavy chain 11 protein-coding 72628 Mm.348030 NR_015611 ENSMUSG00000085696 Hoxaas3 2700086A05Rik - 6|6 B3 Hoxa cluster antisense RNA 3 ncRNA 114472 Sle9 Bsx3 - 1 81.63 cM systematic lupus erythematosus susceptibility 9 unknown 258711 Mm.377648 NM_146716 ENSMUSG00000047048 Olfr432 MOR123-2 - 1|1 H3 olfactory receptor 432 protein-coding 52138 D5Ertd543e - - 5 9.67 cM DNA segment, Chr 5, ERATO Doi 543, expressed unknown 116815 Actvty1 Act-1 - 16 57.68 cM activity 1 unknown 114338 Wta1 - - 4 10.61 cM weight adult 1 unknown 102636471 XR_388937 Gm33528 - - 11 C|11 predicted gene, 33528 ncRNA 105245278 XM_017314170 Gm40755 - - 10 D1|10 predicted gene, 40755 protein-coding 112139 Bgeq14 - - 15 16.74 cM body growth early QTL 14 unknown 387212 NR_029797 ENSMUSG00000065539 Mir216a Mirn216|Mirn216a|mir-216a|mmu-mir-216 - 11 A3.3|11 microRNA 216a ncRNA 105245053 XR_872953 Gm40561 - - 12 E|12 predicted gene, 40561 ncRNA 56325 Mm.254839 NM_019875 ENSMUSG00000029408 Abcb9 TAPL|mKIAA1520 - 5|5 F ATP-binding cassette, sub-family B (MDR/TAP), member 9 protein-coding 100038584 Mm.368385 NR_033544 ENSMUSG00000073051 Gm14812 - - X C3|X predicted gene 14812 ncRNA 102642443 Mm.417248 XR_877279 Gm26717 - - 18 B1|18 predicted gene, 26717 ncRNA 97869 C78809 - - - expressed sequence C78809 protein-coding 360222 Mm.491460 Raxos1 7530406A22Rik - 18|18 E1 retina and anterior neural fold homeobox, opposite strand 1 unknown 100417321 Gm21997 - - 15|15 A1 SEC13 homolog pseudogene pseudo 111608 Xmv27 Xmv-27 - - xenotropic murine leukemia virus 27 other 67557 Mm.44546 NM_026235 ENSMUSG00000034839 Larp6 5430431G03Rik|AI552438|Achn - 9|9 B La ribonucleoprotein domain family, member 6 protein-coding 19468 Rb(10.17)9Mpl Rb9Mpl - - Robertsonian translocation, Chr 10 and 17, Montpellier 9 other 67537 Mm.292351 NM_026223 ENSMUSG00000020214 Glipr1l2 4921508O11Rik - 10|10 D2 GLI pathogenesis-related 1 like 2 protein-coding 27204 Mm.394931 NM_013722 ENSMUSG00000059602 Syn3 - - 10|10 C1 synapsin III protein-coding 100041317 Gm3269 - - 14 A1|14 predicted gene 3269 protein-coding 102467335 n-TLcag4 n-Tl16 - 8 C5|8 nuclear encoded tRNA leucine 4 (anticodon CAG) tRNA 402754 5930427L02Rik - - 9|9 RIKEN cDNA 5930427L02 gene protein-coding 60742 D1Mit74 - - 1 28.81 cM DNA segment, Chr 1, Massachusetts Institute of Technology 74 unknown 102640731 Gm36730 - - 13|13 predicted gene, 36730 pseudo 636462 Ighv8-11 EG636462|Gm7178 - 12|12 F2 immunoglobulin heavy variable V8-11 other 77701 Mm.99123 NM_029958 ENSMUSG00000026943 Lcn12 9230102M18Rik - 2|2 A3 lipocalin 12 protein-coding 111922 Iapls3-42 - - - intracisternal A particle, lymphocyte specific, probe 3-42 other 211548 Mm.274811 NM_153057 ENSMUSG00000030835 Nomo1 D7Ertd156e|Nomo|pM5 - 7 B3|7 29.66 cM nodal modulator 1 protein-coding 52937 1L - - - DNA segment, 1L unknown 258199 Mm.437874 NR_033534 ENSMUSG00000109389 Olfr1300-ps1 MOR248-12 - 2|2 E3 olfactory receptor 1300, pseudogene 1 pseudo 18940 Pnlf2 - - - prenatal lethal function 2 unknown 105243207 Mm.398277 XR_870493 1700020G03Rik Gm45545 - 8|8 B3.3 RIKEN cDNA 1700020G03 gene ncRNA 70441 Mm.458192 NR_033490 ENSMUSG00000100252 Mir124-2hg 100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612 - 3|3 A1 Mir124-2 host gene (non-protein coding) ncRNA 11910 Mm.2706 NM_007498 ENSMUSG00000026628 Atf3 LRG-21 - 1 H6|1 96.28 cM activating transcription factor 3 protein-coding 18127 Mm.258415 NM_008713 ENSMUSG00000028978 Nos3 2310065A03Rik|Nos-3|eNOS|ecNOS - 5 A3|5 11.32 cM nitric oxide synthase 3, endothelial cell protein-coding 320072 Mm.136397 NR_040551 ENSMUSG00000105923 A830019L24Rik - - 3|3 H1 RIKEN cDNA A830019L24 gene ncRNA 665756 Gm20778 - - 8|8 A1.3 POTE ankyrin domain family member F-like pseudo 76850 Mm.86705 NM_153177 ENSMUSG00000042500 Ago4 5730550L01Rik|AI481660|Eif2c4 - 4|4 D2.2 argonaute RISC catalytic subunit 4 protein-coding 330154 Mm.136093 D830035I06 - - 5|5 E5 uncharacterized protein D830035I06 protein-coding 258709 Mm.377646 NM_146714 ENSMUSG00000059503 Olfr248 MOR267-7|Olfr248-ps1|Olfr415 - 1|1 H3 olfactory receptor 248 protein-coding 102636647 XR_376556 Gm33655 - - 4 D1|4 predicted gene, 33655 ncRNA 100042862 Gm4076 - - 13 C3|13 predicted gene 4076 protein-coding 71398 Mm.185296 NM_001163539 ENSMUSG00000025058 5430427O19Rik - - X|X C1 RIKEN cDNA 5430427O19 gene protein-coding 105242708 XR_869221 Gm38851 - - 6 D1|6 predicted gene, 38851 ncRNA 100042691 Obox4-ps11 Gm3968 - 7 A1|7 oocyte specific homeobox 4, pseudogene 11 pseudo 102637334 XR_388582 Gm34173 - - 11 A5|11 predicted gene, 34173 ncRNA 100043049 Gm11582 - - 1|1 C2 dynein light chain LC8-type 1 pseudogene pseudo 102641619 LOC102641619 - - - uncharacterized LOC102641619 protein-coding 100034929 Fpdty - - 8 60.86 cM forelimb polydactyly unknown 71141 Mm.314965 NR_037692 ENSMUSG00000026224 4933407L21Rik - - 1|1 C5 RIKEN cDNA 4933407L21 gene ncRNA 111828 Iapls1-71 - - - intracisternal A particle, lymphocyte specific 1-71 other 13875 Mm.8068 NM_010155 ENSMUSG00000040857 Erf - - 7 A3|7 13.73 cM Ets2 repressor factor protein-coding 100417542 Gm18676 - - 8|8 A2 ring finger and WD repeat domain 2 pseudogene pseudo 102634227 XR_377772 Gm31860 - - 6 C2|6 predicted gene, 31860 ncRNA 105242555 XR_868667 Gm38734 - - 5 G2|5 predicted gene, 38734 ncRNA 269536 Mm.272025 NM_172304 ENSMUSG00000028345 Tex10 2610206N19Rik|2810462N03Rik|BC006867 - 4|4 B1 testis expressed gene 10 protein-coding 237422 Mm.18936 NM_183172 ENSMUSG00000035620 Ric8b BC051080|Ric-8|Ric-8b - 10|10 C1 RIC8 guanine nucleotide exchange factor B protein-coding 21337 Mm.8054 NM_009314 ENSMUSG00000020081 Tacr2 Nk2r|Skr|Tac2r - 10|10 B4 tachykinin receptor 2 protein-coding 102636514 Mm.229304 NR_110474 ENSMUSG00000100510 AV026068 Uph - 8|8 B2 expressed sequence AV026068 ncRNA 102636492 Gm33544 - - 10|10 predicted gene, 33544 pseudo 102631724 XR_375224 Gm29993 - - 2 H3|2 predicted gene, 29993 ncRNA 105243595 XR_882530 LOC105243595 - - - uncharacterized LOC105243595 ncRNA 102632301 XR_388876 Gm30413 - - 11 B5|11 predicted gene, 30413 ncRNA 100885844 NR_049205 ENSMUSG00000093508 Mir5709 Gm22041|mir-5709|mmu-mir-5709 - 17|17 E1.1 microRNA 5709 ncRNA 62696 D17Mit122 - - 17 52.25 cM DNA segment, Chr 17, Massachusetts Institute of Technology 122 unknown 20303 Mm.244263 NM_013652 ENSMUSG00000018930 Ccl4 AT744.1|Act-2|MIP-1B|Mip1b|Scya4 - 11 C|11 51.09 cM chemokine (C-C motif) ligand 4 protein-coding 630022 Mm.457961 NM_001085545 ENSMUSG00000094876 Btbd35f18 Gm14345 - X|X A1.1 BTB domain containing 35, family member 18 protein-coding 434759 Mm.296444 NM_001039689 ENSMUSG00000079635 Rhox4c Rhox4.3|Rhox4b - X|X A3.3 reproductive homeobox 4C protein-coding 100039672 Mm.415110 NM_001099314 ENSMUSG00000078719 Msmp Psmp - 4|4 A5 microseminoprotein, prostate associated protein-coding 69409 Mm.226215 NR_045800 ENSMUSG00000087343 1700021N21Rik - - 4|4 D3 RIKEN cDNA 1700021N21 gene ncRNA 100040957 Gm11355 - - 13|13 A3.1 predicted gene 11355 pseudo 109528 Lrdm1 - - - lymphoproliferation (Fas) renal disease modifier 1 unknown 100533 AA536748 - - - expressed sequence AA536748 protein-coding 100417895 Gm18888 - - 15|15 A1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo 100043831 Mm.320874 XR_001781467 Gm4681 - - 14 E4|14 predicted gene 4681 ncRNA 22401 Mm.35705 NM_009517 ENSMUSG00000027663 Zmat3 Wig1 - 3|3 A3 zinc finger matrin type 3 protein-coding 105245175 XR_873122 Gm40665 - - 13 A1|13 predicted gene, 40665 ncRNA 102640678 XR_375359 Gm36691 - - 2 H3|2 predicted gene, 36691 ncRNA 108167786 XR_001779700 Gm46204 - - 10 D2|10 predicted gene, 46204 ncRNA 238505 Mm.40335 NM_001081128 ENSMUSG00000021311 Mtr AI894170|D830038K18Rik|MS - 13 A1|13 4.52 cM 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 108570 Iap5rc1 - - - intracisternal A-type particle, U5 region, SINE repeat c-1 other 100416781 Gm18247 - - 12|12 D2 SNW domain containing 1 pseudogene pseudo 100038692 Gm10537 - - - predicted gene 10537 protein-coding 105245826 Gm41216 - - 14|14 predicted gene, 41216 ncRNA 111587 Pmv27 Pmv-27 - - polytropic murine leukemia virus 27 other 100035862 Manln8 - - 7 43.46 cM mandible length 8 unknown 51979 DXGgc2e - - - DNA segment, Chr X, G. Consalez 2, expressed unknown 223649 Mm.101946 NM_144847 ENSMUSG00000075590 Nrbp2 BC011468 - 15|15 D3 nuclear receptor binding protein 2 protein-coding 100049167 Gm10550 - - - predicted gene 10550 unknown 234396 Mm.216549 NM_172756 ENSMUSG00000046295 Ankle1 8430438L13Rik|Ankrd41|C430003I23|Lem3 - 8|8 B3.3 ankyrin repeat and LEM domain containing 1 protein-coding 434428 Gm5620 EG434428 - 9|9 E3.1 tubulin, alpha 1B pseudogene pseudo 112424 Lrnx3 - - 9 43.68 cM learning contextual 3 unknown 102467541 n-TIaat2 n-Ti2 - 4 A3|4 nuclear encoded tRNA isoleucine 2 (anticodon AAT) tRNA 114281 Manh14 QTL-SH10.2 - - mandible shape 14 unknown 69768 Mm.396136 NR_040481 ENSMUSG00000099429 1600019K03Rik - - 16|16 B3 RIKEN cDNA 1600019K03 gene ncRNA 27544 D15N11 - - - DNA segment, Ch 15, NIH 11 unknown 27801 Mm.326263 NM_172151 ENSMUSG00000060166 Zdhhc8 D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1 - 16 A3|16 11.29 cM zinc finger, DHHC domain containing 8 protein-coding 623197 NM_001081649 ENSMUSG00000094116 Gm11237 Gm11236 - 4|4 C3 predicted gene 11237 protein-coding 78286 Mm.333881 NM_175272 ENSMUSG00000052512 Nav2 5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015 - 7|7 B4 neuron navigator 2 protein-coding 111541 Pmv23 Pmv-23 - - polytropic murine leukemia virus 23 other 18772 Mm.4494 NM_019645 ENSMUSG00000026413 Pkp1 - - 1|1 E4 plakophilin 1 protein-coding 22314 Mm.458976 NM_009494 ENSMUSG00000057021 Vmn2r-ps159 V2r8|V2r9|Vmn2r-ps160 - 4|4 E2 vomeronasal 2, receptor, pseudogene 159 pseudo 78895 Mm.34344 NM_172437 ENSMUSG00000033356 Pus7l 3000003F02Rik - 15|15 E3 pseudouridylate synthase 7-like protein-coding 16990 lt - - - lustrous unknown 213539 Mm.247037 NM_145392 ENSMUSG00000042215 Bag2 2610042A13Rik|BC016230 - 1|1 B BCL2-associated athanogene 2 protein-coding 27865 D11Moh41e - - - DNA segment, Chr 11, KL Mohlke 41 expressed unknown 30935 Mm.206737 NM_023141 ENSMUSG00000060519 Tor3a Adir - 1|1 G3 torsin family 3, member A protein-coding 230890 Mm.457843 NM_001085504 ENSMUSG00000078505 Gm436 - - 4|4 E1 predicted gene 436 protein-coding 100417814 Gm13745 - - 2|2 D zinc finger and SCAN domain containing 5B pseudogene pseudo 102634178 Gm31825 - - 3|3 predicted gene, 31825 ncRNA 18107 Mm.10265 NM_008707 ENSMUSG00000020936 Nmt1 AW536594 - 11|11 E1 N-myristoyltransferase 1 protein-coding 116860 Bdt6 - - 15 16.7 cM bone density traits 6 unknown 258684 Mm.377638 NM_146689 ENSMUSG00000057503 Olfr1459 MOR202-17 - 19|19 A olfactory receptor 1459 protein-coding 102636675 Gm33678 - - 19|19 predicted gene, 33678 pseudo 102634050 XR_374002 Gm31729 - - 2 A1|2 predicted gene, 31729 ncRNA 18040 Mm.242832 NM_008691 ENSMUSG00000022054 Nefm NF-M|NF160|NF165|Nef3|Nfm - 14|14 D1 neurofilament, medium polypeptide protein-coding 100504194 Gm11922 - - 4 A5|4 13.61 cM splicing factor, arginine/serine-rich 3-like pseudo 100125256 Trbj2-2 Gm16805 - 6 19.7 cM|6 B1 T cell receptor beta joining 2-2 other 102635825 Gm28093 - - Y|Y predicted gene 28093 protein-coding 20425 Mm.364956 NM_009171 ENSMUSG00000020534 Shmt1 AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2 - 11|11 B2 serine hydroxymethyltransferase 1 (soluble) protein-coding 102633935 XR_373518 Gm31637 - - 1 C3|1 predicted gene, 31637 ncRNA 100862466 LOC100862466 - - - 40S ribosomal protein S19-like pseudo 626305 Mm.454021 NM_001270542 ENSMUSG00000078759 Scgb1b7 ABPA7_A29|Abpa29|Abpa7|EG626305|Gm6662 - 7|7 B1 secretoglobin, family 1B, member 7 protein-coding 493800 Mm.458692 NR_102323 9330162012Rik - - 13|13 A3.1 cDNA RIKEN 9330162012 gene ncRNA 69930 Mm.45367 NM_027264 ENSMUSG00000012640 Zfp715 2610041B18Rik|mszf15 - 7|7 B3 zinc finger protein 715 protein-coding 100040488 Ppp1r2-ps5 Gm2802 - 17 A1|17 protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 5 pseudo 100039289 Gm2141 - - 19|19 A ribosomal protein L17 pseudogene pseudo 114886 Mm.34598 NM_030206 ENSMUSG00000020810 Cygb 3110001K20Rik|HGb|Staap - 11|11 E2 cytoglobin protein-coding 102634167 XR_385768 Gm31818 - - 17 E2|17 predicted gene, 31818 ncRNA 214791 Mm.22806 NM_198247 ENSMUSG00000016262 Sertad4 4833404A09|C130018M11Rik - 1|1 H6 SERTA domain containing 4 protein-coding 102637925 XR_387247 Gm34616 - - 1 D|1 predicted gene, 34616 ncRNA 100035757 Cfsw1 - - 3 43.89 cM cystic fibrosis survival to weaning 1 unknown 72114 Mm.3774 NM_028106 ENSMUSG00000041995 Zbed3 0610037K01Rik|2610005H11Rik|AU018975|AU024588 - 13|13 D1 zinc finger, BED type containing 3 protein-coding 54138 Mm.248906 NM_016843 ENSMUSG00000016541 Atxn10 AI325283|C77170|E46|Sca10|TEG-169|Tex169 - 15|15 E2 ataxin 10 protein-coding 102631909 XM_017315289 Gm30124 - - 12 A1.2|12 predicted gene, 30124 protein-coding 268988 Gm5047 EG268988 - 18|18 A1 predicted gene 5047 pseudo 105245816 XR_874815 Gm41206 - - 14 D2|14 predicted gene, 41206 ncRNA 100417725 Gm18786 - - 18|18 E2 3-oxoacyl-ACP synthase, mitochondrial pseudogene pseudo 77173 Mm.402545 NR_040664 ENSMUSG00000086483 8030443G20Rik - - 4|4 C7 RIKEN cDNA 8030443G20 gene ncRNA 105244848 XR_869223 Gm40382 - - 6 D1|6 predicted gene, 40382 ncRNA 12456 Ccpn-ps EG546692 - 17|17 D calcyphosine, pseudogene pseudo 107742 Tse3 Tse-3 - - tissue specific extinction 3, of albumin protein-coding 70461 Mm.392175 NM_173863 ENSMUSG00000030527 Crtc3 2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3 - 7|7 D3 CREB regulated transcription coactivator 3 protein-coding 108168626 XM_017318834 LOC108168626 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 100416351 Gm18063 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 102631997 XR_389240 ENSMUSG00000085126 Gm12589 - - 11 E2|11 87.79 cM predicted gene 12589 ncRNA 627624 Gm6776 EG627624|Gm1830 - 19|19 C3 leucine zipper transcription factor-like 1 pseudogene pseudo 277396 Mm.138073 NM_177784 ENSMUSG00000042155 Klhl23 C130068N17Rik - 2|2 C2 kelch-like 23 protein-coding 54409 Mm.260698 NM_019444 ENSMUSG00000001240 Ramp2 - - 11 D|11 64.47 cM receptor (calcitonin) activity modifying protein 2 protein-coding 665137 Gm7511 EG665137 - 12|12 C1 predicted gene 7511 protein-coding 102639481 XR_375840 Gm35785 - - 3 F1|3 predicted gene, 35785 ncRNA 21391 Mm.4054 NM_011539 ENSMUSG00000029925 Tbxas1 CYP5|CYP5A1|THAS|TS|TXAS|TXS - 6 B1|6 17.85 cM thromboxane A synthase 1, platelet protein-coding 62223 D16Mit89 - - 16 19.68 cM DNA segment, Chr 16, Massachusetts Institute of Technology 89 unknown 60786 D3Mit43 - - 3 52.94 cM DNA segment, Chr 3, Massachusetts Institute of Technology 43 unknown 100039992 Mm.412744 XR_001779676 Gm2539 - - 10 A3|10 predicted gene, 2539 ncRNA 226419 Mm.39299 NM_145508 ENSMUSG00000016526 Dyrk3 BC006704 - 1|1 E4 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 protein-coding 67634 Mm.179144 NM_026286 ENSMUSG00000024510 Ftmt 4930447C24Rik|FerH|Fth3|MtF - 18|18 D1 ferritin mitochondrial protein-coding 102636813 XR_871976 Gm33782 - - 10 C3|10 predicted gene, 33782 ncRNA 111519875 Gm16686 - - 4 42.03 cM predicted gene, 16686 protein-coding 102632287 XR_375653 Gm30402 - - 3 C|3 predicted gene, 30402 ncRNA 21825 Mm.4159 NM_011580 ENSMUSG00000040152 Thbs1 TSP-1|TSP1|Thbs-1|tbsp1 - 2 E5|2 59.34 cM thrombospondin 1 protein-coding 667309 Gm8565 EG667309 - 3|3 E1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102634713 XR_866197 Gm32232 - - 2 C1.1|2 predicted gene, 32232 ncRNA 72170 Mm.41622 NM_133928 ENSMUSG00000034203 Chchd4 2410012P20Rik|2810014D17Rik|AI838740 - 6|6 D1 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 105244965 XR_872890 Gm40483 - - 12 D2|12 predicted gene, 40483 ncRNA 100862402 Gm21711 - - X A3.1|X predicted gene, 21711 pseudo 102636891 XR_390574 Gm33840 - - 4 B2|4 predicted gene, 33840 ncRNA 107980446 Ser - - 6 A3.3 blue cone (S) opsin upstream regulatory region biological-region 76422 Mm.159735 NM_001329610 Mroh3 2310006M14Rik - 1|1 E4 maestro heat-like repeat family member 3 protein-coding 320668 Mm.446882 B930042K01Rik - - X|X RIKEN cDNA B930042K01 gene protein-coding 218271 Mm.139825 NM_146045 ENSMUSG00000021504 B4galt7 - - 13|13 B1 xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) protein-coding 100503970 Mm.490241 NM_001012640 ENSMUSG00000079120 AY761185 - - 8|8 A2 cDNA sequence AY761185 protein-coding 100302634 Mm.417665 NR_152852 ENSMUSG00000095005 Astx6 Gm14949 - X E3|X amplified spermatogenic transcripts X encoded 6 ncRNA 108231 Ube2i-ps2 Ubce9-ps2|ubc9-[y]2 - - ubiquitin-conjugating enzyme E2I, pseudogene 2 pseudo 17763 Mm.16366 NM_001039373 ENSMUSG00000031200 Mtcp1 P13MTCP1 - X|X A7.3 mature T cell proliferation 1 protein-coding 102639765 XR_373356 ENSMUSG00000100832 Gm29260 - - 1 B|1 predicted gene 29260 ncRNA 71023 Mm.61180 4933407C09Rik - - 2|2 RIKEN cDNA 4933407C09 gene protein-coding 102638499 XR_382608 Gm35049 - - 13 B3|13 predicted gene, 35049 ncRNA 102631575 XR_378798 Gm29878 - - 8 A2|8 predicted gene, 29878 ncRNA 14468 Mm.457978 NM_010259 ENSMUSG00000040264 Gbp2b Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1 - 3 H1|3 66.69 cM guanylate binding protein 2b protein-coding 102637382 Gm34209 - - 9|9 predicted gene, 34209 ncRNA 100191037 Mm.432613 NM_001135991 ENSMUSG00000069582 Krtap10-4 675238|A030009A09Rik|AA589524 - 10 C1|10 keratin associated protein 10-4 protein-coding 105245068 Gm40570 - - 12|12 predicted gene, 40570 ncRNA 100034776 Tshp18 QTL-TSH18.1 - - tooth shape 18 unknown 669445 Gm13007 - - 4|4 D3 predicted gene 13007 pseudo 111359 Cryg Len-1 - - crystallin gamma complex other 116820 Angle1 Angle-1 - - angle of entrainment 1 unknown 16306 In(8)16Rk-p In(8)16Rk|In16Rk - - inversion, Chr 8, Roderick 16, proximal other 100043169 Mm.145900 NR_046078 ENSMUSG00000115019 Gm4278 - - 14 D3|14 predicted gene 4278 ncRNA 102467511 n-TQctg3 n-Tq3 - 3 F2.1|3 nuclear encoded tRNA glutamine 3 (anticodon CTG) tRNA 105244978 XR_872902 Gm40496 - - 12 D2|12 predicted gene, 40496 ncRNA 102632134 XR_386393 Gm30288 - - 18 E3|18 predicted gene, 30288 ncRNA 76225 6430711C07Rik - - 6|6 RIKEN cDNA 6430711C07 gene protein-coding 108174 Tk-ps1 - - - thymidine kinase pseudogene 1 pseudo 68948 Mm.474469 NM_026883 ENSMUSG00000029463 Fam216a 1500011H22Rik - 5|5 F family with sequence similarity 216, member A protein-coding 22588 xn hn - - exencephaly unknown 20524 Mm.222536 NM_011399 ENSMUSG00000022404 Slc25a17 34kDa|47kDa|PMP34|Pmp47 - 15|15 E1 solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17 protein-coding 67861 Mm.70371 NM_172398 ENSMUSG00000061758 Akr1b10 2310005E10Rik|Akr1b16 - 6|6 B1 aldo-keto reductase family 1, member B10 (aldose reductase) protein-coding 12672 Mm.330405 NM_007699 ENSMUSG00000040495 Chrm4 Chrm-4|M4 - 2 E1|2 50.63 cM cholinergic receptor, muscarinic 4 protein-coding 102637303 Gm34149 - - 6 G1|6 predicted gene, 34149 pseudo 50755 Mm.24088 NM_015792 ENSMUSG00000058594 Fbxo18 AU015756|Fbh1|Fbx18 - 2|2 A1 F-box protein 18 protein-coding 333329 Mm.484049 NM_145601 ENSMUSG00000031789 Cngb1 Cngb1b|Garp2|Gm1959 - 8|8 C5 cyclic nucleotide gated channel beta 1 protein-coding 18131 Mm.439741 NM_008716 ENSMUSG00000038146 Notch3 AW229011|N3|hpbk - 17 B1|17 17.37 cM notch 3 protein-coding 71113 4933424H11Rik - - 3|3 RIKEN cDNA 4933424H11 gene protein-coding 76429 Mm.276721 NM_029609 ENSMUSG00000030946 Lhpp 2310007H09Rik - 7|7 F3 phospholysine phosphohistidine inorganic pyrophosphate phosphatase protein-coding 102639222 XR_001784488 Gm35581 - - 4 E1|4 predicted gene, 35581 ncRNA 243439 Igkv14-100 Gm16635|cf9 - 6|6 C1 immunoglobulin kappa chain variable 14-100 other 102639178 XR_380027 Gm35549 - - 9 F4|9 predicted gene, 35549 protein-coding 320133 Mm.97196 NM_177079 6030445D17Rik - - 4|4 D3 RIKEN cDNA 6030445D17 gene unknown 100504121 Mm.383770 NR_045273 ENSMUSG00000085260 Med9os 1700013G23Rik - 11|11 B1.3 mediator complex subunit 9, opposite strand ncRNA 228802 Mm.167411 NM_144890 ENSMUSG00000038572 Bpifb5 Lplunc5 - 2|2 H1 BPI fold containing family B, member 5 protein-coding 100266 AU015084 - - - expressed sequence AU015084 unknown 102635945 XR_389637 Gm33154 - - 3 A3|3 predicted gene, 33154 ncRNA 13835 Mm.133330 NM_023580 ENSMUSG00000029859 Epha1 5730453L17Rik|AL033318|Eph|Esk - 6|6 B2.1 Eph receptor A1 protein-coding 668178 Mm.425943 NM_001081471 ENSMUSG00000058057 Mettl7a3 Gm10035|Ubie3 - 15 F1|15 methyltransferase like 7A3 protein-coding 69159 Mm.259708 NM_026967 ENSMUSG00000023755 Rhebl1 1810036J22Rik|Rheb2 - 15|15 F1 Ras homolog enriched in brain like 1 protein-coding 669017 Gm12490 - - 3|3 F2.2 high mobility group box 1-like pseudogene pseudo 109842 Ly20 Ly-20|Ly-22a - - lymphocyte antigen 20 protein-coding 15248 Mm.57250 NM_010430 ENSMUSG00000043099 Hic1 AA408311|HIC-1 - 11 B5|11 45.76 cM hypermethylated in cancer 1 protein-coding 666267 Kat6b-ps1 EG666267|Gm8014 - 7|7 A1 K(lysine) acetyltransferase 6B, pseudogene 1 pseudo 102731 Mm.486161 4833445I07Rik AV253134 - 9|9 F2 RIKEN cDNA 4833445I07 gene protein-coding 353258 Mm.117581 NM_181470 ENSMUSG00000019814 Ltv1 2610020N02Rik - 10|10 A2 LTV1 ribosome biogenesis factor protein-coding 170776 Mm.215729 NM_130903 ENSMUSG00000040165 Cd209c SIGNR2|mSIGNR2 - 8|8 A1.1 CD209c antigen protein-coding 102638058 Gm26976 - - 10|10 predicted gene, 26976 pseudo 107416 BB164765 - - - expressed sequence BB164765 unknown 108168097 XM_017315683 Gm46426 - - 13 B3|13 predicted gene, 46426 protein-coding 110120543 LOC110120543 - - - VISTA enhancer mm1542 biological-region 384001 Mm.475841 Prdx6-ps2 Aop2-rs2|GPx*|Prdx6-rs2 - 4 A3|4 10.59 cM peroxiredoxin 6 pseudogene 2 pseudo 399626 Mm.396062 NR_046016 C330024C12Rik - - 17|17 E4 RIKEN cDNA C330024C12 gene ncRNA 14621 Mm.56906 NM_008127 ENSMUSG00000046623 Gjb4 Cnx30.3|Cx30.3|Gjb-4 - 4 D2.2|4 61.51 cM gap junction protein, beta 4 protein-coding 327992 Mm.390371 NM_001045527 ENSMUSG00000070345 Hsf5 Gm739|MLZ-220 - 11|11 C heat shock transcription factor family member 5 protein-coding 320352 Mm.229153 NM_001309233 ENSMUSG00000074653 Lrrc31 E230002P03Rik - 3|3 A3 leucine rich repeat containing 31 protein-coding 30951 Mm.99953 NM_013926 ENSMUSG00000025578 Cbx8 Pc3 - 11|11 E2 chromobox 8 protein-coding 432720 Mm.22832 NM_001013785 ENSMUSG00000071551 Akr1c19 1810010N06Rik - 13|13 A1 aldo-keto reductase family 1, member C19 protein-coding 112054 Mobq4 Mob4 - 15 1.84 cM multigenic obesity QTL 4 unknown 54219 Mm.11175 NM_019421 ENSMUSG00000002308 Cd320 425O18-1|8D6|D17Ertd716e|NG29|TCblR|VLDL - 17 B1|17 17.98 cM CD320 antigen protein-coding 14408 Mm.14116 NM_008075 ENSMUSG00000028280 Gabrr1 GABA-C - 4 A5|4 14.68 cM gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 protein-coding 85180 D16Mit15 - - 16 30.92 cM DNA segment, Chr 16, Massachusetts Institute of Technology 15 unknown 27726 D1Sta7 - - - DNA segment, Chr 1, Philip Stanier 7 unknown 723954 NR_029901 ENSMUSG00000065460 Mir133a-2 Mirn133a-2|mir-133a-2 - 2|2 H4 microRNA 133a-2 ncRNA 100043257 XR_878599 Rbm3-ps Gm15453 - 1|1 G1 RNA binding motif (RNP1, RRM) protein 3 pseudo 102640409 XR_382636 Gm36474 - - 13 C1|13 predicted gene, 36474 ncRNA 100035230 Knyw4 - - - kidney weight 4 unknown 640532 Gm7299 EG640532 - 1|1 H3 ribosomal protein L17 pseudogene pseudo 108168362 n-TVcac3 Trnav-cac|n-Tv11 - 17 D|17 nuclear encoded tRNA valine 3 (anticodon CAC) tRNA 108168451 Gm15038 - - X F1|X 59.1 cM vacuolar ATPase assembly integral membrane protein Vma21 pseudogene pseudo 105243947 XR_865491 Gm39655 - - 1 C3|1 predicted gene, 39655 ncRNA 75665 Mm.233914 NM_001080808 ENSMUSG00000041609 Bicdl1 2210403N09Rik|BICDR-1|Ccdc64 - 5|5 F BICD family like cargo adaptor 1 protein-coding 75049 Mm.141451 4930517N10Rik - - 9|9 RIKEN cDNA 4930517N10 gene protein-coding 106699572 Cd8_civ CD8DP|E8II|E8III|E8IV|E8VI - - Cd8 alpha DNase I hypersensitive cluster CIV biological-region 102643220 LOC102643220 - - - uncharacterized LOC102643220 ncRNA 320733 Mm.444674 XR_001785447 4930502C15Rik - - 6|6 B1 RIKEN cDNA 4930502C15 gene ncRNA 100041819 Gm10167 - - 5|5 G3 predicted pseudogene 10167 pseudo 270328 Mm.483471 NM_183194 ENSMUSG00000055827 Gsdmc3 9930109F21Rik - 15|15 D1 gasdermin C3 protein-coding 69721 Mm.25648 NM_023526 ENSMUSG00000021772 Nkiras1 2400004O09Rik|KBRAS1|kappaB-Ras1 - 14|14 A2 NFKB inhibitor interacting Ras-like protein 1 protein-coding 97434 T25661 - - - expressed sequence T25661 unknown 102634068 XR_376517 Gm12907 - - 4 C7|4 50.18 cM predicted gene 12907 ncRNA 100035628 spkw2 - - - spike wave 2 unknown 105247181 XR_881487 Gm42324 - - 4 D2.3|4 predicted gene, 42324 ncRNA 234203 Mm.220165 NM_153096 Zfp353-ps Zfp353 - 8|8 A4 zinc finger protein 353, pseudogene pseudo 100861933 LOC100861933 - - 11 C 60S ribosomal protein L21 pseudogene pseudo 102633696 Gm17654 - - 14|14 22.49 cM predicted gene, 17654 protein-coding 105246900 XR_880384 LOC105246900 - - X A3.1 uncharacterized LOC105246900 ncRNA 56631 Mm.179733 NM_031172 ENSMUSG00000036964 Trim17 Rnf16|terf - 11|11 B1.3 tripartite motif-containing 17 protein-coding 22072 Mm.276926 NM_009430 ENSMUSG00000057163 Prss2 TRY8|TRYP|Ta|Tesp4|Try2 - 6|6 B1 protease, serine 2 protein-coding 667266 Gm8546 EG667266 - 13 C3|13 predicted gene 8546 pseudo 62450 D11Mit356 - - - DNA Segment, Chr 11 Massachusetts Institute of Technology 356 unknown 105243323 Gm39279 - - 8|8 predicted gene, 39279 ncRNA 104205 H41 H-41 - - histocompatibility 41 protein-coding 71101 Mm.132178 NM_027674 ENSMUSG00000037355 Uvssa 4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530 - 5|5 B1 UV stimulated scaffold protein A protein-coding 74895 Mm.167258 NM_029115 ENSMUSG00000026578 Ccdc181 4930455F23Rik|AI427889 - 1|1 H2.2 coiled-coil domain containing 181 protein-coding 102640755 XR_386062 Gm36747 - - 18 A1|18 predicted gene, 36747 ncRNA 448829 Mm.159019 Anp32-ps Anp32c|Anp32c-ps|Anp32cl|EG448829 - 11|11 A4 acidic (leucine-rich) nuclear phosphoprotein 32 family, pseudogene pseudo 100040911 Mm.457993 NM_001160131 ENSMUSG00000095650 Gm20854 - - Y|Y E predicted gene, 20854 protein-coding 97445 C77666 - - - expressed sequence C77666 unknown 102462 Mm.12864 NM_133976 ENSMUSG00000032288 Imp3 1190002L16Rik|AI256594 - 9|9 B IMP3, U3 small nucleolar ribonucleoprotein protein-coding 65951 DXCch4 - - - DNA segment, Chr X, Celltech Chiroscience 4 unknown 102632847 XR_389557 Gm30812 - - 5 F|5 predicted gene, 30812 ncRNA 627607 Mm.341880 NM_001195767 ENSMUSG00000059114 Lrrc74a EG627607|Gm6772|Lrrc74 - 12|12 D2 leucine rich repeat containing 74A protein-coding 105244634 XR_867957 Gm12701 - - 4 C6|4 45.71 cM predicted gene 12701 ncRNA 16977 Mm.3207 NM_013588 ENSMUSG00000030125 Lrrc23 4921537K05Rik|B7|Lrpb7 - 6 F2|6 59.17 cM leucine rich repeat containing 23 protein-coding 20566 sll2 sll-2 - - sex linked lethal 2 unknown 108168120 n-TItat14 Trnai-uau|n-TIaat14|n-Ti14 - 13 A3.1|13 nuclear encoded tRNA isoleucine 14 (anticodon TAT) tRNA 665838 Gm7815 EG665838 - 3|3 B nudix (nucleoside diphosphate linked moiety X)-type motif 22 pseudogene pseudo 258947 Mm.271540 NM_146945 ENSMUSG00000059251 Olfr345 MOR136-7 - 2|2 B olfactory receptor 345 protein-coding 257931 Mm.377306 NM_001011769 ENSMUSG00000060030 Olfr317 MOR256-47 - 11|11 B1.3 olfactory receptor 317 protein-coding 102635649 XR_381899 Gm32935 - - 12 F1|12 predicted gene, 32935 ncRNA 66050 Mm.35693 NM_025319 ENSMUSG00000007777 0610009B22Rik - - 11|11 B1.3 RIKEN cDNA 0610009B22 gene protein-coding 320334 4930442M18Rik - - 8|8 RIKEN cDNA 4930442M18 gene protein-coding 100041567 Gm10060 - - 8 A1.3|8 NSFL1 (p97) cofactor (p47) pseudogene pseudo 113861 NM_053234 Vmn1r-ps8 V1rc4 - 6|6 B3 vomeronasal 1 receptor, pseudogene 8 pseudo 193574 Mm.425908 Trav14n-2 EG193574|Gm4743 - 14|14 C2 T cell receptor alpha variable 14N-2 other 97858 C77649 - - - expressed sequence C77649 protein-coding 230103 Mm.103477 NM_173788 ENSMUSG00000028469 Npr2 GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe - 4 A5|4 23.05 cM natriuretic peptide receptor 2 protein-coding 78784 Mm.44292 NM_172434 ENSMUSG00000028137 Celf3 4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4 - 3|3 F2.1 CUGBP, Elav-like family member 3 protein-coding 102637420 XR_385683 Gm34230 - - 17 E1.1|17 predicted gene, 34230 ncRNA 100418281 Gm19115 - - 2|2 G1 a disintegrin and metallopeptidase domain 25 (testase 2) pseudogene pseudo 75260 4930562M23Rik - - 13|13 RIKEN cDNA 4930562M23 gene protein-coding 100041245 Gm13464 - - 2|2 B glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105243433 XR_870852 Gm39359 - - 9 C|9 predicted gene, 39359 ncRNA 381059 Mm.490353 NM_001033442 ENSMUSG00000095720 Gm1604b Gm1604 - 17|17 A1 predicted gene 1604b protein-coding 75510 Mm.273301 NM_029317 ENSMUSG00000066500 Izumo2 1700023D19Rik - 7|7 B3 IZUMO family member 2 protein-coding 13497 Mm.121662 NM_010078 ENSMUSG00000000223 Drp2 AW495265|DRP-2 - X|X E3 dystrophin related protein 2 protein-coding 53314 Mm.6672 NM_016767 ENSMUSG00000034266 Batf B-ATF|SFA-2 - 12|12 D2 basic leucine zipper transcription factor, ATF-like protein-coding 105242611 XR_868827 Gm38779 - - 6 A3.3|6 predicted gene, 38779 ncRNA 671322 Gm9529 - - 19 D3|19 predicted gene 9529 pseudo 102638155 Gm34786 - - Y|Y predicted gene, 34786 ncRNA 75649 1700016L15Rik - - 7|7 RIKEN cDNA 1700016L15 gene protein-coding 27027 Mm.28172 NM_020286 ENSMUSG00000000244 Tspan32 AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6 - 7 F5|7 88.09 cM tetraspanin 32 protein-coding 100035266 Earheal4 - - 18 19.29 cM ear healing QTL 4 unknown 327814 Mm.391424 NM_177373 ENSMUSG00000053825 Ppfia2 5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112 - 10|10 D1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 protein-coding 108168866 XR_001783820 Gm46801 - - 3 B|3 predicted gene, 46801 ncRNA 668677 Gm9300 - - 17|17 E1.1 RAN, member RAS oncogene family pseudogene pseudo 223593 Mm.218665 NM_153548 ENSMUSG00000022350 Washc5 AL022848|C76463|E430025E21Rik|Kiaa0196|mKIAA0196|strumpellin - 15|15 D1 WASH complex subunit 5 protein-coding 100040997 Mm.209563 Gm15340 - - 16|16 C4 predicted gene 15340 unknown 668275 Gm9081 EG668275 - 10|10 D2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 667878 Gm12242 - - 11|11 B1.3 ribosomal protein S6 pseudogene pseudo 20637 Mm.216386 NM_009224 ENSMUSG00000063511 Snrnp70 2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K - 7 B3|7 29.28 cM small nuclear ribonucleoprotein 70 (U1) protein-coding 74191 Mm.90067 NM_028808 ENSMUSG00000036362 P2ry13 2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174 - 3|3 D purinergic receptor P2Y, G-protein coupled 13 protein-coding 109279 9530010C24Rik AI503489|AU019034 - - RIKEN cDNA 9530010C24 gene protein-coding 108168048 Gm46389 - - 13 C3|13 40S ribosomal protein S15a pseudogene pseudo 116876 Pgia1 - - - proteoglycan induced arthritis 1 unknown 51788 Mm.117541 NM_016750 ENSMUSG00000037894 H2afz H2A.Z|H2a.z-1 - 3|3 G3 H2A histone family, member Z protein-coding 71447 5530402G07Rik - - 13|13 RIKEN cDNA 5530402G07 gene protein-coding 17250 Mm.196634 NM_008576 ENSMUSG00000023088 Abcc1 Abcc1a|Abcc1b|MRP|Mdrap|Mrp1 - 16|16 A1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 protein-coding 668719 Gm9318 EG668719 - 12|12 A1.3 ribosomal protein L23A, pseudogene pseudo 100042912 Mm.461180 Gm10489 - - X|X A1.1 predicted gene 10489 unknown 62276 D19Mit35 - - 19 51.41 cM DNA segment, Chr 19, Massachusetts Institute of Technology 35 unknown 56743 Mm.391375 NM_020044 ENSMUSG00000040751 Lat2 AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5 - 5|5 G2 linker for activation of T cells family, member 2 protein-coding 108168619 XM_017318827 LOC108168619 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 105245214 XR_871837 Gm40698 - - 10 C1|10 predicted gene, 40698 ncRNA 105391 AW742221 - - - expressed sequence AW742221 unknown 73953 Mm.475762 4930421J07Rik - - 12|12 RIKEN cDNA 4930421J07 gene unknown 100465 Mm.35571 NM_175308 ENSMUSG00000028709 Mob3c AW822253|D130076I06Rik|Mobkl2c - 4|4 D1 MOB kinase activator 3C protein-coding 384061 Mm.44075 NM_027402 ENSMUSG00000001334 Fndc5 1500001L03Rik|AI836596|C87088|PeP|Pxp - 4|4 D2.2 fibronectin type III domain containing 5 protein-coding 100040218 Mm.287544 NM_001101625 Gm2670 - - 14 A3|14 predicted gene 2670 ncRNA 110952 Atp5g1-rs2 - - - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C (subunit 9), isoform 1, related sequence 2 protein-coding 258271 Mm.377405 NM_146274 ENSMUSG00000109403 Olfr1311 MOR245-21 - 2|2 E3 olfactory receptor 1311 protein-coding 100504109 Gm11336 - - 13|13 9.9 cM predicted gene 11336 protein-coding 102465755 NR_106104 ENSMUSG00000106264 Mir7646 mmu-mir-7646 - X|X F1 microRNA 7646 ncRNA 100526512 NR_037297 ENSMUSG00000092794 Mir3110 mmu-mir-3110 - X A3.3|X 22.47 cM microRNA 3110 ncRNA 432760 Gm5449 EG432760 - 13|13 B1 small nuclear ribonucleoprotein D2 pseudogene pseudo 105243470 XR_870963 Gm39384 - - 9 E2|9 predicted gene, 39384 ncRNA 403343 130004C03 - - - uncharacterized LOC403343 unknown 213491 Mm.332006 NM_174996 ENSMUSG00000040842 Szrd1 1110022I03|D4Ertd22e - 4 D3|4 73.38 cM SUZ RNA binding domain containing 1 protein-coding 625175 Mm.443286 NR_045699 ENSMUSG00000097321 1700028E10Rik A630054D14|Gm6561 - 5 G3|5 RIKEN cDNA 1700028E10 gene ncRNA 15043 Mm.426002 NM_008208 ENSMUSG00000054128 H2-T3 H-2T3|H2-Tw3|MumuTL|TL - 17 B1|17 18.99 cM histocompatibility 2, T region locus 3 protein-coding 73903 Mm.49781 4833403J16Rik BB168546 - - RIKEN cDNA 4833403J16 gene protein-coding 20874 Mm.281011 NM_009289 ENSMUSG00000025060 Slk 9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK - 19|19 C3-D1 STE20-like kinase protein-coding 330149 Mm.121664 NM_177873 ENSMUSG00000043410 Hfm1 A330009G12Rik|Gm1046|Mer3|Sec63d1 - 5|5 E5 HFM1, ATP-dependent DNA helicase homolog protein-coding 108168705 LOC108168705 - - - 60S ribosomal protein L36-like pseudo 97754 C86896 - - - expressed sequence C86896 unknown 26987 Mm.227183 NM_023314 ENSMUSG00000026254 Eif4e2 2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3 - 1|1 C5 eukaryotic translation initiation factor 4E member 2 protein-coding 106564 Mm.27245 NM_026494 ENSMUSG00000028636 Ppcs 6330579B17Rik|AI413471|AI790434 - 4|4 D2.1 phosphopantothenoylcysteine synthetase protein-coding 105245202 XR_871815 Gm40688 - - 10 B5.3|10 predicted gene, 40688 ncRNA 385372 Gm5391 EG385372 - X|X A7.1 RAN binding protein 1 pseudogene pseudo 60990 D1Mit118 - - 1 1.65 cM DNA segment, Chr 1, Massachusetts Institute of Technology 118 unknown 100041407 Gm3320 - - 17 A3.1|17 myeloblastosis oncogene-like 2 pseudogene pseudo 628465 Gm6881 EG628465 - X|X A7.3 ribosomal protein S2 pseudogene pseudo 667564 Gm13347 - - 2|2 A3 GTPase activating protein (SH3 domain) binding protein 2 pseudogene pseudo 619303 Mm.388146 NM_001033807 ENSMUSG00000073141 4930567H17Rik - - X|X A7.2 RIKEN cDNA 4930567H17 gene protein-coding 12426 Mm.44513 NM_007627 ENSMUSG00000030898 Cckbr CCK-BR|CCK2-R|CCK2R|CCKR-2 - 7 E3|7 55.86 cM cholecystokinin B receptor protein-coding 102636541 XR_387857 Gm33577 - - 8 C3|8 predicted gene, 33577 ncRNA 100312539 Vmn1r-ps110 Gm11306 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 110 pseudo 71927 Mm.61018 NM_028007 ENSMUSG00000031703 Itfg1 2310047C21Rik|AI314457|Cda08|D8Wsu49e - 8 C3|8 41.61 cM integrin alpha FG-GAP repeat containing 1 protein-coding 17528 Mm.9986 NM_008623 ENSMUSG00000056569 Mpz Mpp|P-zero|P0 - 1 H3|1 79.05 cM myelin protein zero protein-coding 240479 Mm.472378 NM_173770 ENSMUSG00000047992 Fam69c B230399E16Rik - 18|18 E4 family with sequence similarity 69, member C protein-coding 103661 AI256777 - - - expressed sequence AI256777 unknown 102467406 n-TVcac8 n-Tv16 - 13 A3.1|13 nuclear encoded tRNA valine 8 (anticodon CAC) tRNA 100312542 Vmn1r-ps113 Gm11310 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 113 pseudo 237353 Mm.333078 NM_172788 ENSMUSG00000037990 Sh3rf3 4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31 - 10|10 B4 SH3 domain containing ring finger 3 protein-coding 233893 Mm.297097 NM_146203 ENSMUSG00000045757 Zfp764 8030466O12Rik - 7|7 F3 zinc finger protein 764 protein-coding 102636404 XR_390566 Gm33479 - - 4 B2|4 predicted gene, 33479 ncRNA 102467454 n-TAagc18 n-Ta18 - 13 A3.1|13 nuclear encoded tRNA alanine 18 (anticodon AGC) tRNA 22791 Mm.266312 NM_009584 ENSMUSG00000029014 Dnajc2 AU020218|MIDA1|Zrf1|Zrf2 - 5 A3|5 9.97 cM DnaJ heat shock protein family (Hsp40) member C2 protein-coding 72749 Mm.358749 NM_183091 ENSMUSG00000059323 Tonsl 2810439M11Rik|Nfkbil2 - 15|15 D3 tonsoku-like, DNA repair protein protein-coding 100042583 Gm10268 - - 18|18 B3 predicted gene 10268 protein-coding 216438 Mm.37892 NM_001033262 ENSMUSG00000040502 March9 AI608492|BC019560 - 10|10 D3 membrane-associated ring finger (C3HC4) 9 protein-coding 27927 D0Ffm3 2C2a - - DNA segment, Universitat Frankfurt, Frankfurt/Main 3 unknown 100503111 Gm19560 - - 5|5 38.44 cM synaptonemal complex central element protein 2-like pseudo 387347 Mm.377909 NM_207022 ENSMUSG00000043865 Tas2r118 Gm465|T2R18|Tas2r16|Tas2r18|mGR18|mt2r40 - 6|6 A3.1 taste receptor, type 2, member 118 protein-coding 619937 Hmgb1-ps10 Gm6115|Hmg-1RV-C|Hmg1-rs4|Hmgb1-rs4 - 13|13 D1 high mobility group box1, pseudogene 10 pseudo 211948 Mm.290758 NM_178668 ENSMUSG00000043702 Pde12 2'-PDE|E430028B21Rik - 14|14 A3 phosphodiesterase 12 protein-coding 15353 Mm.38474 NM_010440 ENSMUSG00000020232 Hmg20b AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r - 10 C1|10 39.72 cM high mobility group 20B protein-coding 108168842 XR_001783632 Gm46790 - - 2 H4|2 predicted gene, 46790 ncRNA 102635248 Gm32636 - - Y|Y tRNA methyltransferase 112 homolog pseudo 102465654 NR_106047 ENSMUSG00000098550 Mir7079 Gm27278|mmu-mir-7079 - 8|8 E1 microRNA 7079 ncRNA 61785 D3Mit239 - - 3 17.41 cM DNA segment, Chr 3, Massachusetts Institute of Technology 239 unknown 108168129 n-TTagt4 Trnat-agu|n-Tt4 - 13 A3.1|13 nuclear encoded tRNA threonine 4 (anticodon AGT) tRNA 69983 Mm.261054 NM_001081137 ENSMUSG00000027790 Sis 2010204N08Rik|SI|Si-s - 3 E3|3 32.59 cM sucrase isomaltase (alpha-glucosidase) protein-coding 21679 Mm.14774 NM_011567 ENSMUSG00000030353 Tead4 ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a - 6 F3|6 62.92 cM TEA domain family member 4 protein-coding 67735 Mm.391650 NR_028384 4930528A17Rik - - 4|4 A3 RIKEN cDNA 4930528A17 gene ncRNA 106494 D17Mgi15 AA415813 - - DNA Segment, Chr 17, Mouse Genome Informatics 15 unknown 100126195 Skts-fp2 - - - skin tumor susceptibility in FVB and PWK 2 unknown 100036368 Bfsz2 - - - barrel field size 2 unknown 629383 Gm6969 EG629383 - 12|12 A1.3 cytochrome c oxidase subunit VIIa polypeptide 2-like pseudogene pseudo 100039124 Vmn1r-ps2 Gm11777 - 4|4 A1 vomeronasal 1 receptor, pseudogene 2 pseudo 102639451 XR_392675 LOC102639451 - - - uncharacterized LOC102639451 ncRNA 73868 4930415N12Rik - - 2|2 RIKEN cDNA 4930415N12 gene protein-coding 102632593 XR_879472 Gm30627 - - 19 A|19 predicted gene, 30627 ncRNA 100040160 Mm.482062 NM_001101623 ENSMUSG00000094081 Gm20826 - - Y|Y A1 predicted gene, 20826 protein-coding 114806 Tlln - - - tail length unknown 111839 Iapls2-10 - - - intracisternal A particle, lymphocyte specific 2-10 other 100504640 Gm16089 - - 5 G2|5 76.59 cM cytochrome b-c1 complex subunit 7-like pseudo 100417480 Gm18637 - - 10|10 A3 Rho GTPase activating protein 20 pseudogene pseudo 71715 Mm.315652 NM_145742 ENSMUSG00000027655 Dhx35 1200009D07Rik|Ddx35 - 2|2 H1 DEAH (Asp-Glu-Ala-His) box polypeptide 35 protein-coding 108168719 XR_001783075 LOC108168719 - - 5 A2 uncharacterized LOC108168719 ncRNA 109280016 LOC109280016 Mm132 - - VISTA enhancer mm132 biological-region 15439 Mm.26730 NM_017370 ENSMUSG00000031722 Hp HP-1|preHP2 - 8 D3|8 57.11 cM haptoglobin protein-coding 19729 Mm.17958 NM_009057 ENSMUSG00000027953 Slc50a1 MmSWEET1|Rag1ap1|Rga - 3 F1|3 39.04 cM solute carrier family 50 (sugar transporter), member 1 protein-coding 102637544 XR_386028 Gm34326 - - 18 A1|18 predicted gene, 34326 ncRNA 99296 Mm.285360 NM_133849 ENSMUSG00000039059 Hrh3 AW049250|H3R|HH3R - 2|2 H4 histamine receptor H3 protein-coding 76400 Mm.293018 NM_029595 ENSMUSG00000047104 Pbp2 1700023A18Rik|AI326308|Pebp-2|Pebp2 - 6|6 G1 phosphatidylethanolamine binding protein 2 protein-coding 78526 Mm.439073 NR_045455 ENSMUSG00000086807 Platr21 C330013F16Rik - X|X F1 pluripotency associated transcript 21 ncRNA 100041791 Gm3512 - - 14 A1|14 predicted gene 3512 protein-coding 100042453 NM_001177356 Gm3852 - - 1 C1.1|1 Blcap pseudogene pseudo 100534389 LOC100534389 - - 19|19 A solute carrier family 22 (organic anion transporter), member 19 pseudogene pseudo 278180 Mm.26781 NM_177789 ENSMUSG00000044206 Vsig4 A530061A11|BC025105|CRIg|Z39IG - X|X C3 V-set and immunoglobulin domain containing 4 protein-coding 260423 Mm.221389 NM_013548 ENSMUSG00000100210 Hist1h3f H3.2-221|Hist1 - 13 A3.1|13 9.78 cM histone cluster 1, H3f protein-coding 257963 Mm.377317 NM_001012265 ENSMUSG00000094678 Olfr857 GA_x5J8B7TQMB7-1-306|MOR146-8P - 9|9 A3 olfactory receptor 857 protein-coding 21447 tclw12 tcl-w1|tclw1 - - t-complex lethal w12 unknown 109826 Tli1 - - - T lymphoma induced 1 protein-coding 110186 Tel-rs7 - - - telomere, related sequence 7 protein-coding 68339 Mm.156217 NM_026681 ENSMUSG00000021182 Ccdc88c 0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509 - 12|12 E coiled-coil domain containing 88C protein-coding 545567 XR_383703 ENSMUSG00000115584 Gm5854 EG545567 - 14|14 E2.3 predicted gene 5854 pseudo 16963 Mm.190 NM_008510 ENSMUSG00000026573 Xcl1 AI661682|ATAC|LTN|Lptn|SCM-1|SCM-1a|Scyc1 - 1 H2.2|1 72.26 cM chemokine (C motif) ligand 1 protein-coding 100996932 Mm.491034 XR_376588 Lincred2 Red2 - 4 D2.1|4 long intergenic non-protein coding RNA of erythroid differentiation 2 ncRNA 329482 Mm.389384 NM_177844 Dcdc5 4732421G10Rik|BC048594|EG436559 - 2|2 E3 doublecortin domain containing 5 protein-coding 100039343 Mm.214504 Gm9797 - - 10|10 A1 translocase of inner mitochondrial membrane 8 homolog a1 pseudogene pseudo 666519 Gm8146 EG666519 - 1|1 H4 HAUS augmin-like complex, subunit 5 pseudogene pseudo 360086 D17Jcs40 - - - DNA segment, Chr 17, John C. Schimenti 40 unknown 319713 Mm.329478 NM_198649 ENSMUSG00000032735 Ablim3 AW990719|D930036B08Rik - 18|18 E1 actin binding LIM protein family, member 3 protein-coding 13048 Mm.156172 NM_007804 ENSMUSG00000042589 Cux2 1700051K22Rik|Cutl2|Cux-2 - 5 F|5 62.02 cM cut-like homeobox 2 protein-coding 21324 T(X;7)3Rl T3Rl - - reciprocal translocation, Chr X and 7, Russell 3 other 667207 Gm8515 EG667207 - 3|3 E1 chromatin modifying protein 1A pseudogene pseudo 100042624 Sult2a-ps1 Gm15436 - 7|7 A1 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, pseudogene 1 pseudo 105243804 XR_872230 Gm39571 - - 11 A1|11 predicted gene, 39571 ncRNA 399638 Mm.95774 A030001D16Rik - - - RIKEN cDNA A030001D16 gene protein-coding 100034914 Cia30 - - - collagen induced arthritis QTL 30 unknown 100035901 Cplaq12 - - - circadian period of locomotor activity 12 unknown 14389 Mm.42033 NM_010248 ENSMUSG00000004508 Gab2 AI463667|D130058I17Rik|p97 - 7|7 E1 growth factor receptor bound protein 2-associated protein 2 protein-coding 628338 Rpl23a-ps13 EG628338|Gm6868|Rpl23a-ps|Rpl23a-ps11 - X|X A1.1 ribosomal protein L23A, pseudogene 13 pseudo 102633797 Mm.447425 Gm31537 - - 10|10 predicted gene, 31537 ncRNA 62638 D14Mit136 - - 14 64.87 cM DNA segment, Chr 14, Massachusetts Institute of Technology 136 unknown 66501 Mm.46136 NM_025601 ENSMUSG00000031452 1700029H14Rik - - 8|8 A1.1 RIKEN cDNA 1700029H14 gene protein-coding 231380 Mm.34012 NM_172712 ENSMUSG00000035898 Uba6 4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2 - 5|5 E1 ubiquitin-like modifier activating enzyme 6 protein-coding 55948 Mm.44482 NM_018754 ENSMUSG00000047281 Sfn Er|Mme1|Ywhas - 4 D2.3|4 66.25 cM stratifin protein-coding 503491 Mm.443396 NM_001024225 ENSMUSG00000064213 Defa24 Defcr24 - 8|8 A2 defensin, alpha, 24 protein-coding 62150 D13Mit94 - - 13 24.5 cM DNA segment, Chr 13, Massachusetts Institute of Technology 94 unknown 104725 Mm.485026 NM_134054 ENSMUSG00000044408 Sptssa 1110002B05Rik|AA407909|AA409588|AU041967|Ssspta - 12|12 C1 serine palmitoyltransferase, small subunit A protein-coding 102639798 LOC102639798 - - 15 D1 small nuclear ribonucleoprotein Sm D2 pseudogene pseudo 15002 Mm.327358 NM_010389 ENSMUSG00000041538 H2-Ob A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob - 17 B1|17 17.98 cM histocompatibility 2, O region beta locus protein-coding 100035977 Ccmp8 - - - cerebellar cAMP 8 unknown 100034873 Tgq2 - - 9 71.32 cM triglyceride QTL 2 unknown 665212 Gm12684 - - 4|4 C6 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 66320 Mm.29990 NM_025486 ENSMUSG00000014856 Tmem208 1700006C06Rik|2610030K20Rik|Hspc171 - 8|8 D3 transmembrane protein 208 protein-coding 67101 Mm.358702 NM_025966 ENSMUSG00000062619 2310039H08Rik - - 17|17 C RIKEN cDNA 2310039H08 gene protein-coding 20194 Mm.1 NM_009112 ENSMUSG00000041959 S100a10 42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11 - 3 F2.1|3 40.51 cM S100 calcium binding protein A10 (calpactin) protein-coding 381937 XM_011250758 ENSMUSG00000101436 Gm5157 EG381937 - 7|7 A3 predicted gene 5157 protein-coding 56398 Mm.214765 NM_019769 ENSMUSG00000014077 Chp1 1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac - 2|2 E5 calcineurin-like EF hand protein 1 protein-coding 109513 Alcp14 - - 7 70.29 cM alcohol preference locus 14, female specific unknown 102401 AA414903 - - - expressed sequence AA414903 unknown 100035201 Vacq6 - - 10 3.66 cM voluntary alcohol consumption QTL 6 unknown 60696 D8Mit5 - - 8 24.7 cM DNA segment, Chr 8, Massachusetts Institute of Technology 5 unknown 112383 Eae2 - - - experimental allergic encephalomyelitis susceptibility 2 unknown 117171 Mm.322968 NM_054099 ENSMUSG00000063236 1110038F14Rik - - 15|15 D3 RIKEN cDNA 1110038F14 gene protein-coding 66467 Mm.303441 NM_181392 ENSMUSG00000034345 Gtf2h5 2700017P07Rik|2810432H05Rik|D17Wsu155e - 17 A1|17 3.7 cM general transcription factor IIH, polypeptide 5 protein-coding 433790 Gm13241 - - 4|4 E1 carnitine deficiency-associated gene expressed in ventricle 3 pseudogene pseudo 217214 Mm.31686 NM_145829 ENSMUSG00000048217 Nags 1700120E20Rik|argA - 11|11 D N-acetylglutamate synthase protein-coding 109732 Mcr - - - mast cell regulator unknown 14945 Mm.56993 NM_008196 ENSMUSG00000042385 Gzmk - - 13|13 D2.2 granzyme K protein-coding 100038748 Mm.434851 Gm10700 - - - predicted gene 10700 unknown 404377 Olfr306-ps1 GA_x5J8B7W89HK-6403592-6404251 - 7|7 D3 olfactory receptor 306, pseudogene 1 pseudo 16663 Mm.4646 NM_010662 ENSMUSG00000044041 Krt13 CK13|K13|Krt-1.13|Krt1-13 - 11 D|11 63.41 cM keratin 13 protein-coding 69972 Mm.259547 2810425M01Rik - - 10|10 RIKEN cDNA 2810425M01 gene protein-coding 100462966 Gm19256 - - 10 B4|10 29.16 cM interleukin 25 pseudogene pseudo 105242973 XR_882214 Gm39035 - - 7 D1|7 predicted gene, 39035 ncRNA 100417981 Gm18933 - - 4|4 A1 family with sequence similarity 20, member B pseudogene pseudo 257998 Olfr997-ps1 MOR175-8P - 2|2 D olfactory receptor 997, pseudogene 1 pseudo 67216 Mm.167671 NM_026037 ENSMUSG00000020646 Mboat2 2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2 - 12|12 A1.3 membrane bound O-acyltransferase domain containing 2 protein-coding 105244267 XR_866644 Gm39908 - - 2 E3|2 predicted gene, 39908 ncRNA 100417278 Gm15071 - - X|X F2 BRCA1 associated RING domain 1 pseudogene pseudo 77318 Mm.159895 NM_029898 ENSMUSG00000049985 Ankrd55 C030011J08Rik - 13|13 D2.2 ankyrin repeat domain 55 protein-coding 492876 Arrd3 - - - age-related retinal degeneration 3 unknown 380714 Mm.425697 NM_029548 ENSMUSG00000020847 Rph3al Gm1753|Noc2 - 11|11 B5 rabphilin 3A-like (without C2 domains) protein-coding 102633990 Gm28907 - - Y|Y predicted gene 28907 protein-coding 276891 Mm.69002 NM_178759 ENSMUSG00000055546 Timd4 B430010N18Rik|TIM-4|Tim4 - 11|11 B1.1 T cell immunoglobulin and mucin domain containing 4 protein-coding 105245185 XR_871747 Gm40673 - - 10 B4|10 predicted gene, 40673 ncRNA 100049602 Fmtq3 - - - femur mechanical trait QTL 3 unknown 105243956 XR_865536 Gm39663 - - 1 C3|1 predicted gene, 39663 ncRNA 78141 5430409L15Rik - - 11|11 RIKEN cDNA 5430409L15 gene protein-coding 100861472 NR_046119 ENSMUSG00000095249 n-R5s103 Rn5s3 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 103 rRNA 100037281 Mm.3810 Gm10589 - - - predicted gene 10589 unknown 22203 Uba1y-ps1 A1s9Y-2|Sby|Ube-3|Ube1y-1ps1|Ube1y-2|Ube1y1-ps1 - Y|Y A1 ubiquitin-activating enzyme, Chr Y, pseudogene 1 pseudo 100035687 Mohg8 - - - modifier of hg 8 unknown 15064 Mm.7580 NM_008209 ENSMUSG00000026471 Mr1 H2ls - 1|1 G3 major histocompatibility complex, class I-related protein-coding 100043755 Gm10132 - - 14|14 D3 ribosomal protein L23A pseudogene pseudo 101056169 LOC101056169 - - 7 B1 60S ribosomal protein L23a pseudogene pseudo 102638585 Gm35114 - - 6|6 predicted gene, 35114 ncRNA 72810 Mm.32215 2810455D13Rik - - 19|19 RIKEN cDNA 2810455D13 gene protein-coding 100038699 Mm.467933 NR_033537 ENSMUSG00000074776 Gm10754 - - 10 C3|10 predicted gene 10754 ncRNA 102638532 Gm21735 - - Y|Y predicted gene, 21735 protein-coding 100417221 Gm18460 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 102633815 Gm31548 - - 14|14 predicted gene, 31548 ncRNA 329375 Mm.425079 NM_001085514 ENSMUSG00000079502 Cfap77 1700101E01Rik|Gm823 - 2|2 A3 cilia and flagella associated protein 77 protein-coding 102467243 n-TAtgc9 n-Ta38 - 11 B1.2|11 nuclear encoded tRNA alanine 9 (anticodon TGC) tRNA 105246431 XR_877387 Gm41721 - - 18 C|18 predicted gene, 41721 ncRNA 218268 Mm.425821 NM_001033269 ENSMUSG00000074895 Eif4e1b Eif4eloo|Gm273 - 13|13 B1 eukaryotic translation initiation factor 4E family member 1B protein-coding 60758 D2Mit53 - - 2 86.69 cM DNA segment, Chr 2, Massachusetts Institute of Technology 53 unknown 100043570 Gm11196 - - 11|11 B5 predicted gene 11196 pseudo 73462 Mm.396225 XR_867183 1700052H01Rik Gm30852 - 3|3 B RIKEN cDNA 1700052H01 gene unknown 105243346 XR_870550 Gm39294 - - 9 A2|9 predicted gene, 39294 ncRNA 73254 Mm.441231 NM_028481 ENSMUSG00000056531 Ccdc18 1700021E15Rik|4932411G06Rik|NY-SAR-41 - 5|5 F coiled-coil domain containing 18 protein-coding 100135654 Mm.359489 NM_001102457 ENSMUSG00000079636 Rhox3c EG665203|Rhox3.3|Rhox3b - X|X A3.3 reproductive homeobox 3C protein-coding 12611 Mm.273090 NM_009884 ENSMUSG00000056216 Cebpg C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP - 7|7 B2 CCAAT/enhancer binding protein (C/EBP), gamma protein-coding 13166 Mm.167781 NM_138942 ENSMUSG00000000889 Dbh - - 2 A3|2 19.29 cM dopamine beta hydroxylase protein-coding 102638212 Gm9929 - - 1|1 77.23 cM predicted gene 9929 ncRNA 105243368 XR_870601 Gm39314 - - 9 A4|9 predicted gene, 39314 ncRNA 102635307 XR_389968 Gm32680 - - 7 F4|7 predicted gene, 32680 ncRNA 102634141 Gm31797 - - 3|3 predicted gene, 31797 ncRNA 75695 Mm.41180 NM_021430 ENSMUSG00000029392 Rilpl1 2900002H16Rik|6330559I19Rik|GOSPEL - 5|5 F Rab interacting lysosomal protein-like 1 protein-coding 69051 Mm.274180 NM_133705 ENSMUSG00000026520 Pycr2 1810018M05Rik|P5cr2 - 1|1 H4 pyrroline-5-carboxylate reductase family, member 2 protein-coding 432770 Mm.124021 NM_001256052 ENSMUSG00000074824 Rslcan18 mszf51 - 13|13 B3 regulator of sex-limitation candidate 18 protein-coding 107971 Mm.392206 NM_144939 ENSMUSG00000023266 Frs3 4930417B13Rik|AI449674|Frs2beta|Snt2 - 17|17 C fibroblast growth factor receptor substrate 3 protein-coding 105246571 XR_877844 LOC105246571 - - 19 C3 uncharacterized LOC105246571 ncRNA 67095 Mm.491112 NM_175114 ENSMUSG00000032536 Trak1 2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042 - 9 F4|9 72.41 cM trafficking protein, kinesin binding 1 protein-coding 102635506 XR_386110 Gm32825 - - 18 A2|18 predicted gene, 32825 ncRNA 102634921 Gm32390 - - 9 A1|9 predicted gene, 32390 pseudo 791421 Mm.156674 Gm14168 - - - predicted gene 14168 unknown 11829 Mm.250786 NM_009700 ENSMUSG00000024411 Aqp4 WCH4 - 18 A1|18 8.74 cM aquaporin 4 protein-coding 102636215 XR_377076 Gm33347 Gm43754 - 5 G1.1|5 predicted gene, 33347 ncRNA 102639258 XR_391251 Gm35611 Gm45097 - 7 B2|7 predicted gene, 35611 ncRNA 105980007 LOC105980007 - - - RB enhancer downstream of Pax6 biological-region 108167511 Mm.400599 NR_154465 9130015G15Rik - - 7|7 B4 RIKEN cDNA 9130015G15 gene ncRNA 21527 Tcra-V2.3 - - - T cell receptor alpha, variable 2.3 other 14181 Mm.46053 NM_008009 ENSMUSG00000048373 Fgfbp1 FGF-BP|FGF-BP1|FGFBP-1 - 5|5 B3 fibroblast growth factor binding protein 1 protein-coding 18849 pma - - - peroneal muscular atrophy unknown 80706 Mm.154800 NM_030553 ENSMUSG00000061165 Olfr160 M72|MOR171-3|Olfr7b - 9|9 A4 olfactory receptor 160 protein-coding 668588 XM_006515300 Gm9257 EG668588 - 12|12 A1.2 predicted gene 9257 protein-coding 319851 Mm.403770 A230107O07Rik - - 8|8 RIKEN cDNA A230107O07 gene protein-coding 13262 Del(10)41H Del41H - - deletion, Chr 10, Harwell 41 other 108632 Pltr16 - - - polytropic long terminal repeat containing proviral locus 16 other 109954 P1Ehs1 - - - protein, Chr 1, NIEHS 1 protein-coding 102631673 Gm29567 - - Y|Y predicted gene 29567 ncRNA 667384 Gm16050 EG667384|Gm16051|Gm8603 - 17|17 A1 predicted gene 16050 pseudo 102465592 NR_105945 ENSMUSG00000098706 Mir6979 Gm27524|mmu-mir-6979 - 18|18 B3 microRNA 6979 ncRNA 100861486 NR_046133 ENSMUSG00000093893 n-R5s124 Rn5s15 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 124 rRNA 108167330 XR_381388 Gm45941 - - 12 A2|12 predicted gene, 45941 ncRNA 320637 Mm.394278 C130089K02Rik - - 3|3 C RIKEN cDNA C130089K02 gene protein-coding 111408 Emv46 Emv-46 - - endogenous ecotropic MuLV 46 other 102466636 NR_105792 ENSMUSG00000098533 Mir6373 Gm27870|mmu-mir-6373 - 6|6 D3 microRNA 6373 ncRNA 110461 Tcra-VA10 - - - T cell receptor alpha, variable A10 other 57815 Mm.172679 NM_021343 ENSMUSG00000027722 Spata5 2510048F20Rik|C78064|Spaf - 3|3 B spermatogenesis associated 5 protein-coding 407797 Mm.101139 BC030308 - - - cDNA sequence BC030308 protein-coding 231044 Mm.246596 NM_015739 ENSMUSG00000067724 Gbx1 Gbx-1 - 5 A3|5 11.93 cM gastrulation brain homeobox 1 protein-coding 227867 Mm.29167 NM_172663 ENSMUSG00000069495 Epc2 5830499L14|D2Ertd694e - 2 C1.1|2 28.62 cM enhancer of polycomb homolog 2 protein-coding 105243954 XR_865525 Gm39661 - - 1 C3|1 predicted gene, 39661 ncRNA 634929 Scgb1b11 Gm7147 - 7 B1|7 secretoglobin, family 1B, member 11 protein-coding 209380 Mm.461779 NM_001001318 Gm4759 EG209380 - 7|7 E3 GTPase, very large interferon inducible 1 pseudogene pseudo 105243 Mm.261564 NM_001081060 ENSMUSG00000036123 Slc9a3 9030624O13Rik|AI930210|NHE-3|NHE3 - 13 C1|13 40.15 cM solute carrier family 9 (sodium/hydrogen exchanger), member 3 protein-coding 108168071 XR_001780882 Gm46405 - - 13 A3.1|13 predicted gene, 46405 ncRNA 100502949 Mm.417386 Gm11626 - - 11|11 65.1 cM predicted gene 11626 unknown 102631931 XR_374330 Gm30138 - - 2 B|2 predicted gene, 30138 ncRNA 667571 Gm14706 EG667571 - X|X A7.3 predicted gene 14706 protein-coding 77114 NM_183121 Gm9735 - - 12|12 A1.3 predicted gene 9735 unknown 620760 Mm.259863 NR_015468 ENSMUSG00000087038 2900079G21Rik C130083B14|Gm6179 - 9 F3|9 RIKEN cDNA 2900079G21 gene ncRNA 368203 Mm.452758 NM_203660 ENSMUSG00000112039 Gm5136 C6.1AL|EG368203 - 10 D1|10 predicted gene 5136 protein-coding 13271 Del(14)10H Del10H - - deletion, Chr 14, Harwell 10 other 108169112 LOC108169112 - - 5 E3 PRAME family member 9/15-like pseudo 171281 Mm.202331 NM_134246 ENSMUSG00000021228 Acot3 AW108394|PTE-Ia|Pte2a - 12|12 D1 acyl-CoA thioesterase 3 protein-coding 629833 Ighv3-4 EG629833|Gm7009 - 12|12 F1 immunoglobulin heavy variable V3-4 other 112432 Lrncs3 - - - learning-conditioned stimulus 3 unknown 13481 Mm.22001 NM_010073 ENSMUSG00000026810 Dpm2 AW557993|R75484 - 2|2 B dolichol-phosphate (beta-D) mannosyltransferase 2 protein-coding 73894 Mm.491408 NR_040294 4930414N06Rik - - 19|19 C3 RIKEN cDNA 4930414N06 gene ncRNA 61964 D8Mit296 - - 8 24.66 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 296 unknown 102467302 n-TEttc3 n-Te19 - 3 F2.1|3 nuclear encoded tRNA glutamic acid 3 (anticodon TTC) tRNA 102640001 Gm29420 - - Y|Y predicted gene 29420 protein-coding 236193 Mm.290790 NM_145624 ENSMUSG00000056019 Zfp709 BC021921|GIOT-4|HIT-40 - 8|8 B3.3 zinc finger protein 709 protein-coding 100035874 Dice1b Dice1.2 - - determination of interleukin 4 commitment 1b unknown 233781 Mm.461427 NM_175645 ENSMUSG00000030657 Xylt1 8030490L12 - 7|7 F1 xylosyltransferase 1 protein-coding 23966 Mm.254610 NM_011858 ENSMUSG00000048078 Tenm4 Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302 - 7 E1|7 52.53 cM teneurin transmembrane protein 4 protein-coding 70129 Mm.183126 NM_023557 ENSMUSG00000007034 Slc44a4 2210409B01Rik|NG22|mTPPT1 - 17|17 B1 solute carrier family 44, member 4 protein-coding 435761 Rpl9-ps8 EG435761|Gm5713 - 3|3 H2 ribosomal protein L9, pseudogene 8 pseudo 629480 XR_386288 Gm6978 EG629480|Gm1827 - 18|18 E1 predicted gene 6978 pseudo 15245 Mm.254493 NM_020259 ENSMUSG00000064325 Hhip Hhip1 - 8 C1|8 37.95 cM Hedgehog-interacting protein protein-coding 105243711 Mm.138009 LOC105243711 - - - uncharacterized LOC105243711 ncRNA 102639720 Mm.421423 XR_377965 Gm15083 - - 6 E3|6 52.92 cM predicted gene 15083 ncRNA 76773 Mm.26771 NM_029734 ENSMUSG00000022359 Wdyhv1 2410187C16Rik|AU014961|AW550036|Ntaq1 - 15 D1|15 WDYHV motif containing 1 protein-coding 75188 Mm.348012 NM_029200 ENSMUSG00000096573 1700009J07Rik 4930535B06Rik - 10|10 C1 RIKEN cDNA 1700009J07 gene ncRNA 108168058 LOC108168058 - - 13 C3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 268482 Mm.436651 NM_010661 ENSMUSG00000020912 Krt12 AI835216|K12|Krt-12|Krt1-12 - 11 D|11 62.92 cM keratin 12 protein-coding 16842 Mm.255219 NM_010703 ENSMUSG00000027985 Lef1 3000002B05|AI451430|Lef-1 - 3 G3|3 60.78 cM lymphoid enhancer binding factor 1 protein-coding 20516 Mm.323901 NM_011394 ENSMUSG00000037656 Slc20a2 MolPit2|Pit-2|Pit2|Ram-1|Ram1 - 8 A2|8 11.42 cM solute carrier family 20, member 2 protein-coding 110831 Cbx-rs1 M31 - - chromobox related sequence 1 protein-coding 69757 Mm.389782 NM_027203 ENSMUSG00000078813 Leng1 1500001K17Rik - 7|7 A1 leukocyte receptor cluster (LRC) member 1 protein-coding 108541 Ms13-23 Ms13-Hf7 - - minisatellite 13-23 detected by M13 phage probe other 664628 LOC664628 - - 19|19 A RIKEN cDNA D430026D21 gene unknown 360051 D17Jcs67 - - - DNA segment, Chr 17, John C. Schimenti 67 unknown 97147 C78516 - - - expressed sequence C78516 protein-coding 100042107 Gm3671 - - 9 D|9 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100043495 Gm10155 - - 7|7 F3 ribosomal protein L21 pseudogene pseudo 17859 Mm.2154 NM_010847 ENSMUSG00000025025 Mxi1 Gm10197|Mad2|bHLHc11 - 19 D2|19 47.53 cM MAX interactor 1, dimerization protein protein-coding 14055 Mm.5027 NM_007970 ENSMUSG00000006920 Ezh1 ENX-2 - 11 D|11 64.37 cM enhancer of zeste 1 polycomb repressive complex 2 subunit protein-coding 113850 Mm.377146 NM_053223 ENSMUSG00000062546 V1ra8 Vmn1r-ps33 - 6|6 D1 vomeronasal 1 receptor, A8 protein-coding 360063 D17Jcs32 - - - DNA segment, Chr 17, John C. Schimenti 32 unknown 100039525 Rps11-ps4 Gm9808 - 12|12 B3 ribosomal protein S11, pseudogene 4 pseudo 102638203 XR_383949 Gm34820 - - 15 B3.1|15 predicted gene, 34820 ncRNA 62089 D10Mit96 - - 10 51.19 cM DNA segment, Chr 10, Massachusetts Institute of Technology 96 unknown 18775 Mm.233151 NM_008864 ENSMUSG00000057170 Prl3d1 AI325057|Csh1|Ghd4|PL-I|PL-I-alpha|PL-Ia|Pl-1|Pl1|mPL-I - 13 A3.1|13 12.27 cM prolactin family 3, subfamily d, member 1 protein-coding 26362 Mm.4128 NM_009465 ENSMUSG00000002602 Axl AI323647|Ark|Tyro7|Ufo - 7 A3|7 14.02 cM AXL receptor tyrosine kinase protein-coding 606733 Gm13454 Ppia-ps2_560.1 - 2|2 B peptidylprolyl isomerase A pseudogene 2_560.1 pseudo 62103 D11Mit91 - - 11 46.74 cM DNA segment, Chr 11, Massachusetts Institute of Technology 91 unknown 18818 Plk-ps1 - - 5 B2-B3|5 18.25 cM polo like kinase, pseudogene 1 pseudo 117600 Mm.288698 NM_001081037 ENSMUSG00000020121 Srgap1 4930572H05Rik|Arhgap13 - 10|10 D2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 723884 NR_029826 ENSMUSG00000065609 Mir7-2 Mir7a2|Mirn7-2|mir-7a-2|mir-7a2|mmu-mir-7-2|mmu-mir-7a2 - 7|7 D2 microRNA 7-2 ncRNA 11670 Mm.4257 NM_007436 ENSMUSG00000019102 Aldh3a1 Ahd-4|Ahd4|Aldh|Aldh3 - 11 B2|11 37.96 cM aldehyde dehydrogenase family 3, subfamily A1 protein-coding 70185 2310068G24Rik - - 12|12 RIKEN cDNA 2310068G24 gene protein-coding 108167533 XM_017313039 Gm46041 - - 8 B3.3|8 predicted gene, 46041 protein-coding 12345 Mm.2945 NM_009798 ENSMUSG00000028745 Capzb 1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1 - 4 D3|4 70.59 cM capping protein (actin filament) muscle Z-line, beta protein-coding 59058 Mm.149938 NM_021560 ENSMUSG00000025128 Bhlhe22 Beta3|Beta3a|Bhlhb5 - 3|3 A1 basic helix-loop-helix family, member e22 protein-coding 78028 Mm.243865 XR_871282 4930545L08Rik - - 9|9 F3 RIKEN cDNA 4930545L08 gene ncRNA 61703 D5Mit329 - - 5 82.85 cM DNA segment, Chr 5, Massachusetts Institute of Technology 329 unknown 105242761 Gm38891 - - 6|6 predicted gene, 38891 ncRNA 78848 B230219J02Rik - - 9|9 RIKEN cDNA B230219J02 gene protein-coding 105242727 XR_869314 Gm38867 - - 6 D3|6 predicted gene, 38867 ncRNA 105243526 XR_880251 Gm39422 - - 11 E1|11 predicted gene, 39422 ncRNA 100418417 Gm19198 - - 14|14 D1 nuclear undecaprenyl pyrophosphate synthase 1 homolog pseudogene pseudo 68047 Mm.358710 NM_026530 ENSMUSG00000003199 Mpnd E130307M08Rik - 17|17 D MPN domain containing protein-coding 78709 Mm.99613 NM_183136 ENSMUSG00000050074 Spink8 C630041L24Rik - 9|9 F2 serine peptidase inhibitor, Kazal type 8 protein-coding 666997 Gm8412 EG666997 - 19|19 C1 predicted gene 8412 pseudo 20619 Mm.245715 NM_009222 ENSMUSG00000027287 Snap23 23kDa|AA408749|SNAP-23|Sndt|Syndet - 2 60.37 cM|2 E5 synaptosomal-associated protein 23 protein-coding 433503 Mm.491336 NR_152154 Gm29679 - - 2|2 H3 predicted gene, 29679 ncRNA 329008 Gm5096 EG329008 - 18|18 E4 betaine-homocysteine methyltransferase pseudogene pseudo 212127 Mm.491292 NM_173382 ENSMUSG00000049504 Proser1 2810046L04Rik|9330161F11 - 3|3 C proline and serine rich 1 protein-coding 108168896 XR_001783979 LOC108168896 - - 3 G1 uncharacterized LOC108168896 ncRNA 106050034 Mfcs4 - - - mammal fish conserved sequence 4 biological-region 102633238 Gm29521 - - 9|9 predicted gene 29521 ncRNA 93689 Mm.180124 NM_053106 ENSMUSG00000048096 Lmod1 9530015K06Rik|SM-Lmod - 1|1 E4 leiomodin 1 (smooth muscle) protein-coding 62847 D12Mit210 - - 12 27.21 cM DNA segment, Chr 12, Massachusetts Institute of Technology 210 unknown 102631637 XR_377747 Gm29928 - - 6 C1|6 predicted gene, 29928 ncRNA 109280128 LOC109280128 Mm1388 - - VISTA enhancer mm1388 biological-region 100504405 Rpl30-ps10 EG654357|Gm7330 - X A7.3|X 37.06 cM ribosomal protein L30, pseudogene 10 pseudo 732525 Gt(pU21)111Imeg Ayu21-111|GtAyu21-111 - - gene trap 111, Institute of Molecular Embryology and Genetics unknown 16213 In(1)10Rk-p In(1)10Rk|In10Rk - - inversion, Chr 1, Roderick 10, proximal other 63007 D15Mit272 - - 15 48.37 cM DNA Segment, Chr 15, Massachusetts Institute of Technology 272 unknown 320435 Mm.74632 NM_177158 ENSMUSG00000051735 Rinl 5830482F20Rik|9930116N10Rik - 7|7 B1 Ras and Rab interactor-like protein-coding 61245 D1Mit289 - - 1 63.88 cM DNA segment, Chr 1, Massachusetts Institute of Technology 289 unknown 67352 Mm.220761 1700093E11Rik - - 2|2 RIKEN cDNA 1700093E11 gene protein-coding 105246699 Gm41946 - - 1|1 predicted gene, 41946 ncRNA 102639637 Gm35901 - - 13|13 predicted gene, 35901 pseudo 75596 Mm.46087 NM_029355 ENSMUSG00000021347 Prl7b1 1600014J19Rik|Ghd17|PLP-N|Prlpn - 13|13 A3.1 prolactin family 7, subfamily b, member 1 protein-coding 100418127 Gm19020 - - 11|11 A4 S-adenosylmethionine decarboxylase, pseudogene 3 pseudogene pseudo 74963 Mm.394974 4930470F04Rik - - 19|19 RIKEN cDNA 4930470F04 gene protein-coding 668085 Gm8968 EG668085 - 5|5 A1 predicted gene 8968 pseudo 211978 Mm.297919 NM_001008550 ENSMUSG00000066440 Zfyve26 4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321 - 12|12 C3 zinc finger, FYVE domain containing 26 protein-coding 14105 Mm.10229 NM_010178 ENSMUSG00000028676 Srsf10 FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2 - 4|4 D3 serine/arginine-rich splicing factor 10 protein-coding 277463 Mm.236074 NM_178760 ENSMUSG00000000194 Gpr107 9930033D15Rik|AI790205|C530034M11|mKIAA1624 - 2|2 B G protein-coupled receptor 107 protein-coding 74094 Mm.284594 NM_028751 ENSMUSG00000012296 Tjap1 0610041D19Rik|AI415281|AW121008|Pilt|Tjp4 - 17|17 C tight junction associated protein 1 protein-coding 22393 Mm.20916 NM_011716 ENSMUSG00000039474 Wfs1 AI481085|wolframin - 5|5 B3 wolframin ER transmembrane glycoprotein protein-coding 216635 Mm.338482 NM_175000 ENSMUSG00000020295 Hbq1a A230090E05Rik|Gm876|Hbq1|Hbqt2 - 11|11 A4 hemoglobin, theta 1A protein-coding 13722 Mm.235137 NM_007926 ENSMUSG00000028029 Aimp1 9830137A06Rik|AIMP1/p43|EMAPII|Emap2|Scye1|p43 - 3|3 G3 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 protein-coding 227707 Mm.235238 NM_144885 ENSMUSG00000026851 BC005624 - - 2|2 B cDNA sequence BC005624 protein-coding 675578 Mm.491584 Gm9648 - - 8 A4|8 predicted gene 9648 unknown 216644 Mm.387062 NM_001033265 D130052B06Rik Gm246 - 11|11 A4 RIKEN cDNA D130052B06 gene unknown 62562 D12Mit119 - - 12 44.92 cM DNA segment, Chr 12, Massachusetts Institute of Technology 119 unknown 13650 Mm.11545 NM_010117 ENSMUSG00000020282 Rhbdf1 C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242 - 11 A4|11 18.83 cM rhomboid 5 homolog 1 protein-coding 100503265 Mm.125059 NR_040428 ENSMUSG00000107198 Gm19619 - - 5 E1|5 44.78 cM predicted gene, 19619 ncRNA 100036392 Dshv1 - - - dorsal hippocampal volume 1 unknown 67264 Mm.2060 NM_026061 ENSMUSG00000025204 Ndufb8 2900010I05Rik|AI987932|CI-ASHI - 19|19 C3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 protein-coding 433638 Mm.239081 NM_001033780 ENSMUSG00000074342 I830077J02Rik - - 3|3 F2.2 RIKEN cDNA I830077J02 gene protein-coding 213002 Mm.276440 NM_001033632 ENSMUSG00000059108 Ifitm6 A330075D07|Dspa2f|Fgls5|fragilis5 - 7|7 F5 interferon induced transmembrane protein 6 protein-coding 85093 D7Mit114 - - 7 15.42 cM DNA segment, Chr 7, Massachusetts Institute of Technology 114 unknown 100041312 Gm11378 - - 13|13 A3.2 predicted gene 11378 protein-coding 623172 Mm.2251 Gm6403 EG623172 - 1|1 H6 predicted gene 6403 unknown 234825 Mm.209329 NM_145605 ENSMUSG00000040263 Klhdc4 AA408426|AV352552|BC012312|G430025P05Rik - 8|8 E1 kelch domain containing 4 protein-coding 62240 D17Mit70 - - 17 27.42 cM DNA segment, Chr 17, Massachusetts Institute of Technology 70 unknown 102639357 XR_374164 Gm35689 - - 2 A3|2 predicted gene, 35689 ncRNA 258908 Mm.377745 NM_146906 ENSMUSG00000051160 Olfr853 MOR154-1 - 9|9 A3 olfactory receptor 853 protein-coding 100877 AV074028 - - - expressed sequence AV074028 unknown 62442 D10Mit282 - - 10 9.75 cM DNA Segment, Chr 10 Massachusetts Institute of Technology 282 unknown 102635617 XM_017318699 Gm21756 - - Y B|Y predicted gene, 21756 protein-coding 100035822 Estoq4 Estq4 - - embryo survival total QTL 4 unknown 72669 Mm.10434 NM_028318 2810032G03Rik AI461720 - 12|12 A1.1 RIKEN cDNA 2810032G03 gene ncRNA 105245046 Gm40555 - - 12|12 predicted gene, 40555 ncRNA 102636293 XR_373316 Gm33401 - - 1 B|1 predicted gene, 33401 ncRNA 74165 Mm.297998 NM_175206 ENSMUSG00000050503 Fbxl22 1110004B15Rik - 9|9 C F-box and leucine-rich repeat protein 22 protein-coding 434510 Mm.387937 NM_001034892 ENSMUSG00000093812 Gm5627 EG434510 - 9 F1|9 predicted gene 5627 ncRNA 102640124 Gm36266 - - 5|5 predicted gene, 36266 ncRNA 102638786 Gm35267 - - 11 A4|11 predicted gene, 35267 pseudo 435904 Igkv12-40 EG435904|Gm5722 - 6|6 C1 immunoglobulin kappa chain variable 12-40 pseudo 102638714 XR_381276 Gm35208 - - 12 A1.1|12 predicted gene, 35208 ncRNA 100416199 Gm14975 - - X|X E3 ribosomal protein S8 pseudogene pseudo 330577 Mm.222812 NM_177894 ENSMUSG00000038570 Saxo2 1700129I04Rik|D030069K18|Fam154b - 7|7 D3 stabilizer of axonemal microtubules 2 protein-coding 12774 Mm.14302 NM_009917 ENSMUSG00000079227 Ccr5 AM4-7|CD195|Cmkbr5 - 9 F4|9 75.05 cM chemokine (C-C motif) receptor 5 protein-coding 102636789 XR_873404 Gm33763 - - 13 B1|13 predicted gene, 33763 ncRNA 226162 Mm.21978 NM_172639 ENSMUSG00000041035 Dpcd Ndac - 19|19 C3 deleted in primary ciliary dyskinesia protein-coding 20723 Mm.245041 NM_009256 ENSMUSG00000045827 Serpinb9 BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin - 13 A3.2|13 13.79 cM serine (or cysteine) peptidase inhibitor, clade B, member 9 protein-coding 108167385 LOC108167385 - - - killer cell lectin-like receptor 4 pseudo 207165 Mm.343986 NM_176850 ENSMUSG00000040481 Bptf 9430093H17Rik|Falz - 11|11 E1 bromodomain PHD finger transcription factor protein-coding 100035440 Ity6 - - - immunity to S. typhimurium 6 unknown 68397 Mm.426889 NR_131025 0610039H22Rik - - 11|11 C RIKEN cDNA 0610039H22 gene ncRNA 71913 Mm.34256 NM_024246 ENSMUSG00000001420 Tmem79 2310042N02Rik|2310074C17Rik|Matt|ma - 3|3 F1 transmembrane protein 79 protein-coding 100043709 Gm4600 - - 16 B3|16 ribosomal protein L9 pseudogene pseudo 75880 Mm.396109 NR_045070 ENSMUSG00000115779 4930592A05Rik - - 15|15 B3.1 RIKEN cDNA 4930592A05 gene ncRNA 16717 l17Pas2 l(17)-2Pas - - lethal, Chr 17, Pasteur Institute 2 unknown 26409 Mm.258589 NM_009316 ENSMUSG00000028284 Map3k7 B430101B05|C87327|Tak1 - 4|4 A5 mitogen-activated protein kinase kinase kinase 7 protein-coding 105243452 XR_870916 Gm39370 - - 9 D|9 predicted gene, 39370 ncRNA 102632681 XR_869404 Gm30690 - - 6 F1|6 predicted gene, 30690 ncRNA 52346 D2Ertd501e - - 2 76.94 cM DNA segment, Chr 2, ERATO Doi 501, expressed unknown 637051 Gm7199 EG637051 - X F4|X fusion, derived from t(12;16) malignant liposarcoma pseudogene pseudo 108168231 XR_001781612 Gm46509 - - 15 D1|15 predicted gene, 46509 ncRNA 100035013 Fmgty12 - - 15 19.26 cM femur geometry 12 unknown 224045 Mm.233855 NM_172265 ENSMUSG00000003235 Eif2b5 C81315 - 16|16 A3 eukaryotic translation initiation factor 2B, subunit 5 epsilon protein-coding 67912 Mm.390949 NM_026451 ENSMUSG00000050088 1600012H06Rik - - 17|17 A2 RIKEN cDNA 1600012H06 gene protein-coding 241589 Mm.358909 NM_001033347 ENSMUSG00000068373 D430041D05Rik 9630056G07Rik|G2 - 2 E2|2 54.59 cM RIKEN cDNA D430041D05 gene protein-coding 232685 Mm.443019 NM_144555 ENSMUSG00000044471 Lncpint Lincpint|MNCb-1768|Pint|linc-Pint - 6|6 A3.3 long non-protein coding RNA, Trp53 induced transcript ncRNA 61102 D1Mit500 - - 1 65.18 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 500 unknown 112252 Cia2 - - 2 34.9 cM collagen induced arthritis QTL 2 unknown 76612 Mm.17757 NM_027164 ENSMUSG00000015980 Lrrc27 1700071K18Rik|2310044E02Rik - 7|7 F4 leucine rich repeat containing 27 protein-coding 105244444 XR_867296 Gm40051 - - 3 C|3 predicted gene, 40051 ncRNA 493148 Nhdlq1 - - 8 44.99 cM non-HDL QTL 1 unknown 102638579 Gm28897 - - Y|Y predicted gene 28897 protein-coding 79235 Mm.33921 NM_023624 ENSMUSG00000028003 Lrat 1300010A18Rik|AI449251 - 3|3 E3 lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase) protein-coding 233918 Mm.78341 NM_173409 ENSMUSG00000013668 4933402N03Rik 4930412O05 - 7|7 F3 RIKEN cDNA 4933402N03 gene protein-coding 107403063 LOC107403063 - - 2 H3 adenosine deaminase upstream regulatory elements biological-region 102632192 Mm.417247 NR_126082 ENSMUSG00000107675 Gm30332 - - 6 G1|6 predicted gene, 30332 ncRNA 100503835 Gm19917 - - 1 A3|1 4.5 cM predicted gene, 19917 pseudo 17936 Mm.25903 NM_008667 ENSMUSG00000002881 Nab1 - - 1 C1.1|1 26.99 cM Ngfi-A binding protein 1 protein-coding 29819 Mm.216257 NM_025303 ENSMUSG00000025920 Stau2 - - 1|1 A3 staufen double-stranded RNA binding protein 2 protein-coding 93836 Mm.29783 NM_033604 ENSMUSG00000032217 Rnf111 ARK|Arkadia - 9 D|9 39.53 cM ring finger 111 protein-coding 102631829 XR_385622 Gm30068 - - 17 C|17 predicted gene, 30068 ncRNA 214627 Mm.491211 NM_001164497 ENSMUSG00000036779 Papd5 5730445M16Rik|5830428A09 - 8|8 C3 PAP associated domain containing 5 protein-coding 76368 2610028L16Rik - - - RIKEN cDNA 2610028L16 gene protein-coding 258113 Mm.377352 NM_001011837 ENSMUSG00000060084 Olfr748 MOR106-9P - 14|14 C1 olfactory receptor 748 protein-coding 319707 Mm.392191 NR_102293 ENSMUSG00000101581 C430002N11Rik - - 9|9 E3.3 RIKEN cDNA C430002N11 gene ncRNA 319460 Mm.394402 A130094D17Rik - - 2|2 RIKEN cDNA A130094D17 gene unknown 676689 LOC676689 - - - H-2 class I histocompatibility antigen, L-D alpha chain precursor-like protein-coding 319997 Mm.116691 NM_177055 ENSMUSG00000052760 A630001G21Rik - - 1|1 C5 RIKEN cDNA A630001G21 gene protein-coding 100503854 Rps23-ps2 Gm10186 - 8 A1.1|8 1.92 cM ribosomal protein S23, pseudogene 2 pseudo 105245406 XM_011243958 LOC105245406 - - 12 A1.3 hippocalcin-like protein 1 protein-coding 100043227 Mm.475614 NM_001166634 ENSMUSG00000091101 Gm4302 - - 10 D1|10 predicted gene 4302 protein-coding 100035316 Orgwt2 - - - organ weight 2 unknown 14709 Mm.103770 NM_010320 ENSMUSG00000063594 Gng8 G(y)8 - 7 A2|7 9.15 cM guanine nucleotide binding protein (G protein), gamma 8 protein-coding 102641860 Mm.153432 XR_870304 Gm26578 - - 8 A3|8 predicted gene, 26578 ncRNA 102636231 LOC102636231 - - 4 A5 60S ribosomal protein L37 pseudogene pseudo 57321 Mm.213064 NM_020584 ENSMUSG00000033430 Terf2ip Rap1 - 8|8 E1 telomeric repeat binding factor 2, interacting protein protein-coding 73182 Mm.158962 NM_028460 ENSMUSG00000028073 Pear1 3110045G13Rik|Jedi-1|Megf12 - 3|3 F1 platelet endothelial aggregation receptor 1 protein-coding 27634 D0Dcr11 - - - DNA segment, Derry C. Roopenian 11 unknown 245424 Mm.336070 NM_001033360 ENSMUSG00000036357 Gpr101 GPCR6|Gm365 - X|X A6 G protein-coupled receptor 101 protein-coding 108168335 XR_001782177 Gm46591 - - 17 A1|17 predicted gene, 46591 ncRNA 102635905 XR_384058 Gm33123 - - 15 B3.1|15 predicted gene, 33123 ncRNA 234358 Mm.334577 NM_001013379 ENSMUSG00000059897 Zfp930 - - 8|8 B3.3 zinc finger protein 930 protein-coding 54637 Mm.28850 NM_138602 ENSMUSG00000031149 Praf2 AA986329|C78013|DXImx39e|JM4|Sfc20 - X A1.1|X 3.48 cM PRA1 domain family 2 protein-coding 102633221 XR_377383 Gm31103 - - 6 A3.3|6 predicted gene, 31103 ncRNA 102639279 XR_384107 Gm35627 - - 15 D1|15 predicted gene, 35627 ncRNA 102637276 XR_386137 Gm34136 - - 18 A2-B1|18 predicted gene, 34136 ncRNA 320659 Mm.122233 A630031M04Rik - - 4|4 D2.2 RIKEN cDNA A630031M04 gene unknown 328108 Mm.138465 NM_177805 ENSMUSG00000035614 Togaram1 A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423 - 12|12 C1 TOG array regulator of axonemal microtubules 1 protein-coding 102637946 XR_386254 Gm34632 - - 18 D3|18 predicted gene, 34632 ncRNA 102637361 Gm29476 - - Y|Y predicted gene 29476 protein-coding 102634396 XR_373914 Gm31988 - - 1 H6|1 predicted gene, 31988 ncRNA 234199 Mm.277955 NM_145594 ENSMUSG00000031594 Fgl1 Mfire1 - 8|8 A4 fibrinogen-like protein 1 protein-coding 110120367 LOC110120367 - - - VISTA enhancer mm148 biological-region 107372 Mm.17942 NM_175354 C030016D13Rik AW413347 - 19|19 C1 RIKEN cDNA C030016D13 gene ncRNA 103611158 NM_001301256 Gm38666 Pcdha6-g - 18 B2-B3|18 predicted gene, 38666 protein-coding 56542 Mm.288719 NM_019987 ENSMUSG00000009828 Ick 2210420N10Rik|AI848300|Mrk - 9|9 E1 intestinal cell kinase protein-coding 55961 Mm.19299 NM_019481 ENSMUSG00000029700 Slc13a1 AI314066|AI987826|NaSi-1|Nas1 - 6 A3.1|6 11.22 cM solute carrier family 13 (sodium/sulfate symporters), member 1 protein-coding 105245238 Gm40719 - - 10|10 predicted gene, 40719 ncRNA 77286 Mm.21649 NM_029891 ENSMUSG00000044149 Nkrf 9430034D17Rik|AW124770|C80287 - X|X A3.3 NF-kappaB repressing factor protein-coding 100042601 Gm3922 EG435427|Got2-ps - 14|14 C2 aspartate aminotransferase, mitochondrial, pseudogene pseudo 20837 st - - - shaker-short unknown 105244438 Gm40045 - - 3|3 predicted gene, 40045 protein-coding 18573 Mm.40678 NM_016744 ENSMUSG00000059173 Pde1a AI987702|AW125737 - 2|2 C3 phosphodiesterase 1A, calmodulin-dependent protein-coding 21975 Mm.10708 NM_009410 ENSMUSG00000002814 Top3a - - 11|11 B2 topoisomerase (DNA) III alpha protein-coding 102632213 Gm5548 EG433643 - 3 F3|3 49.35 cM leptin receptor gene-related protein pseudogene pseudo 64580 Mm.444289 NM_022565 ENSMUSG00000027971 Ndst4 4930439H17Rik - 3|3 G1 N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4 protein-coding 320125 Mm.216517 E130002L11Rik - - 12|12 RIKEN cDNA E130002L11 gene protein-coding 116944 Naad2 - - - Neu associated allelic deletion 2 other 78703 NM_183135 ENSMUSG00000074529 Zfp972 C330013J21Rik - 2|2 H4 zinc finger protein 972 protein-coding 105247345 LOC105247345 - - - uncharacterized LOC105247345 ncRNA 109279913 LOC109279913 Mm143 - - VISTA enhancer mm143 biological-region 102631928 XR_373970 Gm30136 - - 2 A1|2 predicted gene, 30136 ncRNA 114874 Mm.121918 NM_176845 ENSMUSG00000037697 Ddhd1 Mir5131|PA-PLA1 - 14|14 C1 DDHD domain containing 1 protein-coding 68295 Mm.253648 NM_026661 ENSMUSG00000027628 Aar2 0610011L14Rik - 2|2 H1 AAR2 splicing factor homolog protein-coding 102638574 XR_391673 Gm35107 - - X A5|X predicted gene, 35107 ncRNA 78754 Mm.40681 NM_030166 ENSMUSG00000021903 Galnt15 4631401E18Rik|Galntl2|mpp-GalNAc-T15 - 14|14 B polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 69030 Mm.402692 NR_040439 ENSMUSG00000100182 1810006J02Rik - - 1|1 D RIKEN cDNA 1810006J02 gene ncRNA 26939 Mm.193632 NM_025298 ENSMUSG00000030880 Polr3e RPC5|Sin - 7|7 F2 polymerase (RNA) III (DNA directed) polypeptide E protein-coding 69955 Mm.70690 NM_024274 ENSMUSG00000021420 Fars2 Fars1|pheRS - 13|13 A3.3 phenylalanine-tRNA synthetase 2 (mitochondrial) protein-coding 52201 D1Ertd273e - - 1 56.89 cM DNA segment, Chr 1, ERATO Doi 273, expressed unknown 102632360 XR_375376 Gm14616 - - 2 H4|2 98.14 cM predicted gene 14616 ncRNA 20747 Mm.285454 NM_025287 ENSMUSG00000057522 Spop AI315626|Pcif1|TEF2 - 11 D|11 59.01 cM speckle-type POZ protein protein-coding 237091 Mm.135547 NM_178358 ENSMUSG00000041700 Lhfpl1 Lhfp - X|X F2 lipoma HMGIC fusion partner-like 1 protein-coding 258443 Mm.377506 NM_146451 ENSMUSG00000050742 Olfr164 MOR279-2 - 16|16 A3 olfactory receptor 164 protein-coding 61175 D17Mit25a D17Mit25 - 17 5.07 cM DNA segment, Chr 17, Massachusetts Institute of Technology 25a unknown 16985 Mm.234003 NM_019391 ENSMUSG00000018819 Lsp1 Lsp-1|WP34|p50|pp52 - 7 F5|7 87.93 cM lymphocyte specific 1 protein-coding 100418409 Gm19191 - - 13|13 A1 eukaryotic translation initiation factor 4E nuclear import factor 1 pseudogene pseudo 93919 D16Jhu57 405K20.T7 - - DNA segment, Chr 16, Johns Hopkins University 57 unknown 12047 Mm.378888 NM_007536 ENSMUSG00000099974 Bcl2a1d A1-d - 9|9 E3.1 B cell leukemia/lymphoma 2 related protein A1d protein-coding 102636265 XR_381107 Gm33379 - - 11 A3.2|11 predicted gene, 33379 ncRNA 102632948 XR_382087 Gm30893 - - 13 A1|13 predicted gene, 30893 ncRNA 26464 Mm.27334 NM_011979 ENSMUSG00000020010 Vnn3 - - 10|10 A4 vanin 3 protein-coding 62949 D11Mit330 - - 11 62.92 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 330 unknown 102638603 XR_375189 Gm35129 - - 2 H2|2 predicted gene, 35129 ncRNA 52757 D17Wsu19e - - - DNA segment, Chr 17, Wayne State University 19, expressed unknown 110880 Mm.432528 NM_133199 ENSMUSG00000001027 Scn4a Nav1.4|SkM1|mH2 - 11 E1|11 68.91 cM sodium channel, voltage-gated, type IV, alpha protein-coding 17319 Mm.2326 NM_010798 ENSMUSG00000033307 Mif GIF|Glif - 10 38.59 cM|10 C1 macrophage migration inhibitory factor (glycosylation-inhibiting factor) protein-coding 100118398 Trdj2 - - 14|14 C2 T cell receptor delta joining 2 other 74637 Mm.200905 NM_029031 ENSMUSG00000005951 Shpk 4930431K22Rik|AI194947|AW260459|Carkl - 11|11 B4 sedoheptulokinase protein-coding 76265 Mm.275438 NM_029557 ENSMUSG00000020781 Tsen54 0610034P02Rik - 11|11 E2 tRNA splicing endonuclease subunit 54 protein-coding 102638066 XR_381939 Gm34719 - - 12 F1|12 predicted gene, 34719 ncRNA 100033452 Gm13394 - - 2|2 A3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 66682 Mm.29090 NM_025701 ENSMUSG00000040236 Trappc5 4021401A16Rik|TRS31 - 8 A1.1|8 1.92 cM trafficking protein particle complex 5 protein-coding 100462738 Gm19245 - - 6 F1|6 57.01 cM ribosomal protein S27 pseudogene pseudo 239157 Mm.44358 NM_175498 ENSMUSG00000046204 Pnma2 A830049P17Rik|mKIAA0883 - 14|14 D1 paraneoplastic antigen MA2 protein-coding 100504112 Mm.379654 NM_001195091 ENSMUSG00000096257 Ccer2 EG624918|Gm6537 - 7|7 B1 coiled-coil glutamate-rich protein 2 protein-coding 320772 Mm.227680 NM_207010 ENSMUSG00000034912 Mdga2 6720489L24Rik|9330209L04Rik|Adp|Mamdc1 - 12 C2|12 27.63 cM MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 107730 Tpd52-ps Tpd52-rs1 - 8|8 C1 tumor protein D52, pseudogene pseudo 140573 D4Mon1 - - - DNA segment, Chr 4, Monell Chemical Senses Center 1 unknown 114525 Fglu Fgq1 - 6 15.12 cM fasting glucose unknown 258072 Olfr841-ps1 MOR266-7P - 9|9 A2 olfactory receptor 841, pseudogene 1 pseudo 100124388 Traj15 Gm16658 - 14|14 C2 T cell receptor alpha joining 15 other 105244615 XR_880022 Gm40200 - - 11 B5|11 predicted gene, 40200 ncRNA 545556 Gm12428 - - 3|3 F2.2 14-3-3 protein eta pseudogene pseudo 111986 Obq4 - - 17 4.92 cM obesity QTL 4 unknown 620865 Gm14845 EG620865 - X|X D RNA binding protein pseudogene pseudo 223989 Mm.85442 NM_001081154 ENSMUSG00000060657 Marf1 4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430 - 16|16 A1 meiosis regulator and mRNA stability 1 protein-coding 22052 trm - - - tremor unknown 108168836 XR_001783622 Gm46787 - - 2 H3|2 predicted gene, 46787 ncRNA 75370 Mm.159511 NR_045379 ENSMUSG00000097387 4930563E18Rik - - 18|18 A1 RIKEN cDNA 4930563E18 gene ncRNA 319937 Mm.446634 A130091G23Rik - - 10|10 RIKEN cDNA A130091G23 gene protein-coding 110001 Dgsh - - - DiGeorge syndrome gene h protein-coding 635396 Mm.485766 NM_001199311 ENSMUSG00000091863 Cldn34a Gm7157 - X F3|X claudin 34A protein-coding 613120 Ugt1a7b-ps - - - UDP glucuronosyltransferase 1 family, polypeptide A7B, pseudogene pseudo 102632169 Gm30315 - - 9|9 predicted gene, 30315 ncRNA 100034733 2610305J24Rik - - 10|10 A2 RIKEN cDNA 2610305J24 gene other 102635979 Gm33178 - - 8 B3.3|8 predicted gene, 33178 pseudo 102640231 Gm36348 - - 2|2 predicted gene, 36348 ncRNA 105247229 XR_881640 Gm42363 - - 4 E2|4 predicted gene, 42363 ncRNA 105245962 XR_875377 Gm41333 - - 15 D1|15 predicted gene, 41333 ncRNA 227995 Gm13607 - - 2|2 C1.3 actin-like 6A pseudogene pseudo 102638432 XR_388957 Gm35002 - - 11 D|11 predicted gene, 35002 ncRNA 384018 Gm12479 - - 4|4 B2 TPX2, microtubule-associated protein homolog pseudogene pseudo 102633783 XM_011249731 ENSMUSG00000094874 LOC102633783 - - - sp110 nuclear body protein-like protein-coding 240396 Mm.24131 NM_001039214 ENSMUSG00000037253 Mex3c A130001D14Rik|BC035207|BM-013|Rkhd2 - 18|18 E2 mex3 RNA binding family member C protein-coding 636187 XM_003688790 Gm20764 - - 4|4 A5 predicted gene, 20764 protein-coding 102985 AU020096 - - - expressed sequence AU020096 protein-coding 668930 Gm14156 - - 2|2 G3 ribosomal protein L7A pseudogene pseudo 69590 Mm.12715 NM_027127 ENSMUSG00000021760 Gpx8 2310016C16Rik|AU017063 - 13|13 D2.2 glutathione peroxidase 8 (putative) protein-coding 14067 Mm.12900 NM_007976 ENSMUSG00000026579 F5 AI173222|Cf-5|Cf5 - 1 H2.2|1 71.46 cM coagulation factor V protein-coding 102639510 XR_379541 Gm35809 - - 9 C|9 predicted gene, 35809 ncRNA 100418238 Gm19091 - - 7|7 A3 RNA (guanine-9-) methyltransferase domain containing 2 pseudogene pseudo 667824 Gm8834 EG667824 - 10|10 B1 glutathione S-transferase, mu 3 pseudogene pseudo 100036462 Elads2 - - - ENU induced lung adenoma susceptibility 2 unknown 108167621 XR_001778907 Gm46089 - - 1 B|1 predicted gene, 46089 ncRNA 100503370 Gm19660 - - 4|4 55.34 cM predicted gene, 19660 ncRNA 100039157 Pou5f1-rs3 Gm2071|Otf3-rs3|Otf3c - 3|3 A1 POU domain, class 5, transcription factor 1, related sequence 3 pseudo 195236 Mm.204664 NM_001162928 ENSMUSG00000016982 Pom121l2 Gm24 - 13|13 A3.1 POM121 membrane glycoprotein-like 2 (rat) protein-coding 60935 DXMit13 - - X 63.29 cM DNA segment, Chr X, Massachusetts Institute of Technology 13 unknown 109280142 LOC109280142 Mm1330 - - VISTA enhancer mm1330 biological-region 66078 Mm.379100 NM_024168 ENSMUSG00000035585 Tsen34 0610027F08Rik|Leng5 - 7|7 A1 tRNA splicing endonuclease subunit 34 protein-coding 68484 Mm.46209 NM_130856 ENSMUSG00000062400 Krtap6-5 1110002D05Rik|Krtap16-8 - 16|16 C3.3 keratin associated protein 6-5 protein-coding 12592 Mm.4353 NM_007674 ENSMUSG00000031326 Cdx4 Cdx-3|Cdx-4|Cdx3 - X D|X 46.06 cM caudal type homeobox 4 protein-coding 100042080 Gm20902 - - Y|Y predicted gene, 20902 protein-coding 100418460 Gm4202 100043062|Gm17510 - 3|3 F1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide pseudogene pseudo 77359 Mm.402745 9430063H18Rik - - 7|7 RIKEN cDNA 9430063H18 gene protein-coding 100504399 Mm.72070 NM_177842 C130021I20Rik - - 2|2 B Riken cDNA C130021I20 gene ncRNA 20719 Mm.252210 NM_009254 ENSMUSG00000060147 Serpinb6a 4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin - 13 A3.3|13 14.0 cM serine (or cysteine) peptidase inhibitor, clade B, member 6a protein-coding 52000 D17Ertd277e - - 17 15.62 cM DNA segment, Chr 17, ERATO Doi 277, expressed unknown 56486 Mm.272460 NM_019749 ENSMUSG00000018567 Gabarap - - 11 B3|11 42.95 cM gamma-aminobutyric acid receptor associated protein protein-coding 105245153 XR_871642 Gm40645 - - 10 B3|10 predicted gene, 40645 ncRNA 60851 D5Mit73 - - 5 12.88 cM DNA segment, Chr 5, Massachusetts Institute of Technology 73 unknown 111335 Cat2 Cat-2|Nzc|Rop|Scat - - dominant cataract 2 other 61024 D7Mit113 - - 7 13.93 cM DNA segment, Chr 7, Massachusetts Institute of Technology 113 unknown 105246148 XR_876207 Gm41484 - - 16 C3.3|16 predicted gene, 41484 ncRNA 100039751 Rps12-ps21 EG665249|Gm16422 - X|X E3 ribosomal protein S12, pseudogene 22 pseudo 634588 Gm7140 EG634588 - 17 A1|17 adaptor-related protein complex 3, sigma 1 subunit pseudogene pseudo 52982 18E - - - DNA segment, 18E unknown 21288 T(9;17)138Ca T138Ca - - reciprocal translocation, Chr 9 and 17, Carter 138 other 319791 9430011C21Rik - - 18|18 RIKEN cDNA 9430011C21 gene protein-coding 14810 Mm.278672 NM_008169 ENSMUSG00000026959 Grin1 GluN1|GluRdelta1|GluRzeta1|M100174|NMD-R1|NMDAR1|NR1|Nmdar|Rgsc174 - 2 A3|2 17.14 cM glutamate receptor, ionotropic, NMDA1 (zeta 1) protein-coding 67036 Mm.5381 NM_025927 ENSMUSG00000018882 Mrpl45 2600005P05Rik|AU043542|R75241 - 11|11 D mitochondrial ribosomal protein L45 protein-coding 105244389 XR_867059 Gm40008 - - 2 H3|2 predicted gene, 40008 ncRNA 102635785 Gm33034 - - 18|18 predicted gene, 33034 ncRNA 216749 Mm.213205 NM_153079 ENSMUSG00000037393 Nmur2 Nmu2r - 11|11 B1.3 neuromedin U receptor 2 protein-coding 100312478 Vmn1r-ps39 - - 7 3.14 cM|7 A1 vomeronasal 1 receptor, pseudogene 39 pseudo 73363 Mm.50115 NM_028516 ENSMUSG00000044854 1700056E22Rik - - 1|1 H5 RIKEN cDNA 1700056E22 gene protein-coding 102635066 XR_383277 Gm32497 - - 14 A3|14 predicted gene, 32497 ncRNA 258592 Mm.377582 NM_146599 ENSMUSG00000051591 Olfr697 MOR283-5 - 7|7 E3 olfactory receptor 697 protein-coding 50794 Mm.240473 NM_021366 ENSMUSG00000052040 Klf13 0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1 - 7|7 C Kruppel-like factor 13 protein-coding 105247666 XR_888585 LOC105247666 - - - uncharacterized LOC105247666 ncRNA 100036537 Mm.437541 NR_029465 ENSMUSG00000079564 Gm11149 - - 9 A5.3|9 predicted gene 11149 ncRNA 382494 Rpl15-ps1 Gm12048 - 11|11 A3.2 ribosomal protein L15, pseudogene 1 pseudo 100416551 Gm18157 - - 11|11 C ribosomal protein L13 pseudogene pseudo 100040426 Gm13192 - - 2|2 A1 40S ribosomal protein S28 pseudogene pseudo 100316725 NR_035516 ENSMUSG00000089406 Mir2136 mmu-mir-2136 - 9 F1|9 56.61 cM microRNA 2136 ncRNA 69314 Mm.55891 NM_027034 ENSMUSG00000028533 Izumo3 1700011H22Rik - 4|4 C5 IZUMO family member 3 protein-coding 101055902 XM_017318691 Gm29740 - - Y A2|Y predicted gene, 29740 protein-coding 100042098 Gm14825 - - X|X C3 cell division cycle associated 5 pseudogene pseudo 100039034 XM_011251070 ENSMUSG00000095452 Gm20795 - - Y|Y B predicted gene, 20795 protein-coding 105245650 XR_874004 Gm41077 - - 13 D2.3|13 predicted gene, 41077 ncRNA 78623 Mm.443298 XR_001781712 1700041B01Rik - - 15|15 E1 RIKEN cDNA 1700041B01 gene unknown 723831 NR_029647 ENSMUSG00000094316 Mir297-1 Mir297a-1|Mirn297-1 - 7 A1|7 microRNA 297-1 ncRNA 22033 Mm.380491 NM_011633 Traf5 - - 1 H6|1 97.11 cM TNF receptor-associated factor 5 protein-coding 102635046 XR_383384 Gm32482 - - 14 C1|14 predicted gene, 32482 ncRNA 100038481 Mm.387544 NR_033511 Gm10510 - - 17 A2|17 predicted gene 10510 ncRNA 414127 Mm.450768 NR_045404 G630055G22Rik - - 18 C|18 RIKEN cDNA G630055G22 gene ncRNA 258208 Olfr396-ps1 MOR135-19 - 11|11 B4 olfactory receptor 396, pseudogene 1 pseudo 107846 Trex1b - - - Tcr1 region expressed 1, D17Leh66b region protein-coding 102639462 Mm.406830 Gm35769 - - 15|15 predicted gene, 35769 ncRNA 109899 Akp1 Akp-1 - - alkaline phosphatase 1 protein-coding 75769 Mm.72187 NM_029425 ENSMUSG00000033342 Plppr5 4833424O15Rik|Lppr5|PRG-5|Pap2d - 3|3 G1 phospholipid phosphatase related 5 protein-coding 109756 H8 H-8 - - histocompatibility 8 protein-coding 105242682 XR_869176 Gm38832 Gm45050 - 6 C1|6 predicted gene, 38832 ncRNA 105245301 XR_001779699 Gm40776 - - 10 D2|10 predicted gene, 40776 ncRNA 100034855 Splrn2 - - - spatial learning 2 unknown 22329 Mm.76649 NM_011693 ENSMUSG00000027962 Vcam1 CD106|Vcam-1 - 3 G1|3 50.17 cM vascular cell adhesion molecule 1 protein-coding 723950 NR_029814 ENSMUSG00000093073 Mir124a-2 Mirn124a-2|mir-124-2|mir-124a-2 - 3 A1|3 microRNA 124a-2 ncRNA 75456 Mm.79179 NM_029294 ENSMUSG00000092305 Prps1l1 1700011K15Rik - 12|12 A3 phosphoribosyl pyrophosphate synthetase 1-like 1 protein-coding 665603 Gm7709 EG665603 - 5 E1|5 heat shock protein 5 pseudogene pseudo 106930 Mm.426458 AI661384 - - - expressed sequence AI661384 protein-coding 21064 T(11;16)29Ad T29Ad - - reciprocal translocation, Chr 11 and 16, Adler 29 other 102465630 NR_106007 ENSMUSG00000099035 Mir7040 Gm27489|mmu-mir-7040 - 6|6 C3 microRNA 7040 ncRNA 102640773 Mm.157746 XR_388182 Gm9901 - - 8 E2|8 72.23 cM predicted gene 9901 ncRNA 100791 AU014888 - - - expressed sequence AU014888 unknown 102465781 NR_106145 ENSMUSG00000098400 Mir7680 Gm27417|mmu-mir-7680 - 16|16 B1 microRNA 7680 ncRNA 384514 Mm.359125 Igkv4-57-1 Gm1418 - 6|6 C1 immunoglobulin kappa variable 4-57-1 other 102632317 XR_882452 Gm30422 - - 4 E2|4 predicted gene, 30422 ncRNA 12974 Mm.58836 NM_026444 ENSMUSG00000005683 Cs 2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis - 10|10 D3 citrate synthase protein-coding 73671 Mm.45514 NM_001163625 ENSMUSG00000038045 Sult6b1 2410078J06Rik|AV101767|ST6B1 - 17|17 E3 sulfotransferase family, cytosolic, 6B, member 1 protein-coding 20659 soo - - - sooty foot unknown 18635 pf pd - - pupoid fetus unknown 52806 D2Bwg0405e - - 2 10.33 cM DNA segment, Chr 2, Brigham & Women's Genetics 0405 expressed unknown 51823 D3Abb1e - - - DNA segment, Chr 3, Abbott 1 expressed unknown 19528 Rb(3.6)3Tu Rb3Tu - - Robertsonian translocation, Chr 3 and 6, Tubingen 3 other 17700 Mm.3514 NM_010834 ENSMUSG00000026100 Mstn Cmpt|Gdf8 - 1 C1.1|1 26.99 cM myostatin protein-coding 100502633 Selenok-ps3 Gm19297 - 19 A|19 10.39 cM selenoprotein K, pseudogene 3 pseudo 102632749 Gm21801 - - Y|Y predicted gene, 21801 protein-coding 16153 Mm.874 NM_010548 ENSMUSG00000016529 Il10 CSIF|Il-10 - 1 E4|1 56.89 cM interleukin 10 protein-coding 102635341 LOC102635341 - - 14 C3 transcription factor BTF3 pseudogene pseudo 15211 Mm.2284 NM_010421 ENSMUSG00000025232 Hexa Hex-1 - 9 B|9 32.02 cM hexosaminidase A protein-coding 108167972 XR_001780529 ENSMUSG00000112704 Gm46329 - - 12 C1|12 predicted gene, 46329 ncRNA 102640055 Gm21785 - - Y|Y predicted gene, 21785 protein-coding 319331 Mm.244705 B930086H10Rik - - 2|2 RIKEN cDNA B930086H10 gene protein-coding 319259 Mm.258355 NM_175682 ENSMUSG00000045744 Bricd5 9930021D14Rik - 17|17 A3.3 BRICHOS domain containing 5 protein-coding 546842 Cyp4a30-ps Cyp4a30a-ps|Gm12836 - 4|4 D1 cytochrome P450, family 4, subfamily a, member 30, pseudogene pseudo 73725 1110001D16Rik - - 4|4 RIKEN cDNA 1110001D16 gene protein-coding 257920 Olfr404-ps1 MOR133-5P - 11|11 B5 olfactory receptor 404, pseudogene 1 pseudo 107228251 LOC107228251 - - - origin of replication in Tsix biological-region 625958 Gm12611 - - 11|11 B2 phosphoserine aminotransferase 1 pseudogene pseudo 114752 Mors1 - - 1 91.86 cM modifier of obesity related sterility 1 unknown 666537 Gm8153 EG666537 - 10 C1|10 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 13209 Mm.267061 NM_007841 ENSMUSG00000032097 Ddx6 1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck - 9 A5.2|9 24.84 cM DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 protein-coding 13256 Del(1)70H Del70H - - deletion, Chr 1, Harwell 70 other 100035775 Tgls1 Tgs-1 - 4 61.52 cM triglyceride level suppressor 1 unknown 105244243 XR_866574 Gm39886 - - 2 E2|2 predicted gene, 39886 ncRNA 73972 Mm.107680 NR_045960 ENSMUSG00000113644 4930448C13Rik - - 12|12 A1.1 RIKEN cDNA 4930448C13 gene ncRNA 100034938 Vtbt19 - - 18 27.17 cM vertebral trabecular bone trait 19 unknown 102635771 XR_377790 Gm33024 Gm43918 - 6 C3|6 predicted gene, 33024 ncRNA 69748 Mm.82139 NM_145954 ENSMUSG00000007833 Aldh16a1 2410004H02Rik|AI452234|mFLJ00209 - 7|7 B3 aldehyde dehydrogenase 16 family, member A1 protein-coding 140798 Pas5 Sluc4 - 11 42.94 cM pulmonary adenoma susceptibility 5 unknown 102638620 XR_382539 Gm35143 - - 13 B2|13 predicted gene, 35143 ncRNA 102632349 Gm30445 - - 16|16 predicted gene, 30445 ncRNA 216783 Mm.377240 NM_207230 ENSMUSG00000107711 Olfr320 GA_x6K02T2NKPP-730312-729392|MOR285-4|MOR285-5|Olfr321-ps1 - 11|11 B1.3 olfactory receptor 320 protein-coding 18740 Mm.135195 NM_011097 ENSMUSG00000021506 Pitx1 Bft|P-OTX|Potx|Ptx1 - 13 B1|13 30.06 cM paired-like homeodomain transcription factor 1 protein-coding 102634209 Gm31849 - - 10 B3|10 predicted gene, 31849 pseudo 109807 H20 H-20 - - histocompatibility 20 protein-coding 670250 Gm9481 - - 17 A3.2|17 mitochondrial ribosomal protein L41 pseudogene pseudo 67687 Mm.178707 NM_026315 ENSMUSG00000031682 1700011L22Rik - - 8|8 C1 RIKEN cDNA 1700011L22 gene protein-coding 108010 Igkv3-8 Igk-V21-8 - 6|6 C1 immunoglobulin kappa variable 3-8 pseudo 671232 Mm.296421 NM_001199736 ENSMUSG00000094985 Topaz1 Gm9524 - 9 F4|9 testis and ovary specific PAZ domain containing 1 protein-coding 108167644 XR_001779124 Gm46107 - - 9 A4|9 predicted gene, 46107 ncRNA 620444 Gm6152 EG620444 - 1|1 A1 predicted gene 6152 pseudo 19084 Mm.30039 NM_021880 ENSMUSG00000020612 Prkar1a 1300018C22Rik|RIalpha|Tse-1|Tse1 - 11 E1|11 72.33 cM protein kinase, cAMP dependent regulatory, type I, alpha protein-coding 102639037 XM_006519807 ENSMUSG00000114852 LOC102639037 - - 14 B disks large homolog 5-like protein-coding 61989 D9Mit310 - - 9 57.34 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 310 unknown 75646 Mm.212395 NM_030690 ENSMUSG00000022246 Rai14 1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334 - 15|15 A1 retinoic acid induced 14 protein-coding 68509 Mm.328855 NM_026747 ENSMUSG00000044172 Ptx4 1110018H23Rik - 17|17 A3.3 pentraxin 4 protein-coding 100417558 Gm12388 - - 4|4 A5 solute carrier family 20, member 1 pseudogene pseudo 62529 D11Mit153 - - 11 29.93 cM DNA segment, Chr 11, Massachusetts Institute of Technology 153 unknown 102640722 XR_391271 Gm36722 - - 7 B2|7 predicted gene, 36722 ncRNA 107993 Mm.335403 NM_001002896 ENSMUSG00000032556 Bfsp2 AI448593|CP49 - 9|9 F1 beaded filament structural protein 2, phakinin protein-coding 111317 Hmgn2-rs18 Hmg17-rs18 - - high mobility group nucleosomal binding domain 2, related sequence 18 pseudo 232338 Gm4875 EG232338 - 6|6 F1 Lasp1 pseudogene pseudo 13279 Del(14)30H Del30H - - deletion, Chr 14, Harwell 30 other 108168323 XM_017317745 Gm46580 - - 17 E1.1|17 predicted gene, 46580 protein-coding 109979 Mm.263514 NM_181728 ENSMUSG00000034842 Art3 4930569O04Rik|ARTC3 - 5 E2|5 46.54 cM ADP-ribosyltransferase 3 protein-coding 60839 D5Mit11 - - 5 26.02 cM DNA segment, Chr 5, Massachusetts Institute of Technology 11 unknown 108511 Ms13-7 Ms13-Ps7 - - minisatellite 13-7 detected by M13 phage probe other 240239 Mm.186779 NM_181543 ENSMUSG00000042816 Gpr151 C130082O03Rik|GalRL|PGR7|nGPCR-2037 - 18|18 B3 G protein-coupled receptor 151 protein-coding 62369 D10Mit153 - - 10 3.7 cM DNA segment, Chr 10, Massachusetts Institute of Technology 153 unknown 100035187 Htas5 - - - hypothermia due to alcohol sensitivity 5 unknown 52067 D8Ertd56e - - 8 70.79 cM DNA segment, Chr 8, ERATO Doi 56, expressed unknown 99946 Mm.440672 6720422M22Rik BB143565 - - RIKEN cDNA 6720422M22 gene protein-coding 69456 Mm.210734 NM_178377 ENSMUSG00000042705 Commd10 2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre - 18|18 C COMM domain containing 10 protein-coding 110543 Ptma-rs5 - - - prothymosin alpha, related sequence 5 protein-coding 78552 Mm.289190 NR_024324 ENSMUSG00000044141 E130201H02Rik - - 7|7 F2 Y box protein 1 pseudogene pseudo 105246624 Gm41889 - - X|X predicted gene, 41889 ncRNA 234023 Mm.251655 NM_176849 ENSMUSG00000040459 Arglu1 9430010O03Rik|C130008N12 - 8|8 A1.1 arginine and glutamate rich 1 protein-coding 224585 Mm.296036 NM_145483 ENSMUSG00000067942 Zfp160 6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47 - 17 A3.2|17 11.4 cM zinc finger protein 160 protein-coding 73442 Mm.39739 NM_175199 ENSMUSG00000025092 Hspa12a 1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417 - 19|19 D2 heat shock protein 12A protein-coding 102633582 XR_373864 Gm31373 - - 1 H6|1 predicted gene, 31373 ncRNA 100125268 Vmn2r-ps126 - - 17 A3.2|17 vomeronasal 2, receptor, pseudogene 126 pseudo 66054 Mm.29646 NM_023149 ENSMUSG00000024644 Cndp2 0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1 - 18|18 E4 CNDP dipeptidase 2 (metallopeptidase M20 family) protein-coding 105244547 XR_867613 Gm40140 - - 3 G1|3 predicted gene, 40140 ncRNA 102632962 XR_373985 Gm30904 - - 2 A1|2 predicted gene, 30904 ncRNA 21223 T(5;7)50Ad T50Ad - - reciprocal translocation, Chr 5 and 7, Adler 50 other 117292 Dyscalc3 - - 12 2.59 cM dystrophic cardiac calcinosis 3 unknown 102633940 XR_373868 Gm31640 - - 1 H6|1 predicted gene, 31640 ncRNA 100035347 Bod6 BOD10.1 - 10 54.72 cM bone length and organs 6 unknown 52979 2b9 - - - DNA segment, 2b9 unknown 54375 Mm.250214 NM_018745 ENSMUSG00000037458 Azin1 1700085L02Rik|AZI|Oazi|Oazin - 15|15 B3.1 antizyme inhibitor 1 protein-coding 621677 Mm.207290 NR_046021 ENSMUSG00000110101 Gm6249 EG621677 - 7|7 F3 predicted gene 6249 ncRNA 100417185 Gm14981 - - X|X E3 crumbs homolog 1 pseudogene pseudo 105245109 XR_871462 Gm40603 - - 10 A2|10 predicted gene, 40603 ncRNA 100035491 Bmc5 - - - bone mineral content 5 unknown 228662 Mm.153405 NM_145534 ENSMUSG00000062098 Btbd3 mKIAA0952 - 2|2 F3 BTB (POZ) domain containing 3 protein-coding 11820 Mm.277585 NM_007471 ENSMUSG00000022892 App Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp - 16 C3.3|16 46.92 cM amyloid beta (A4) precursor protein protein-coding 66124 Mm.358691 NM_025368 ENSMUSG00000038695 Josd2 1110007C05Rik - 7|7 B3 Josephin domain containing 2 protein-coding 61897 D1Mit456 - - 1 79.96 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 456 unknown 102636282 Gm17124 - - 14|14 22.43 cM predicted gene 17124 protein-coding 111743 Mpmv24 Env-34|Mpmv-24|Xmmv-34 - - modified polytropic murine leukemia virus 24 other 102640839 XR_001783016 Gm12963 - - 4 D2.2|4 63.43 cM predicted gene 12963 protein-coding 14467 Mm.12468 NM_008095 ENSMUSG00000029432 Nipsnap2 AV006093|Gbas - 5|5 G1.3 nipsnap homolog 2 protein-coding 24109 Mm.21846 NM_011908 ENSMUSG00000001687 Ubl3 AW108023|HCG|MUB|mmMUB - 5|5 G3 ubiquitin-like 3 protein-coding 102632042 XR_388631 Gm30217 - - 11 B1.3|11 predicted gene, 30217 ncRNA 102639137 Mm.474515 XR_389515 Gm26515 - - 5 F|5 predicted gene, 26515 ncRNA 667130 Gm8475 EG667130 - X F3|X RAB7, member RAS oncogene family pseudogene pseudo 381291 Mm.328097 Gm1627 - - 1|1 E4 predicted gene 1627 protein-coding 74144 Mm.485070 NM_028783 ENSMUSG00000032125 Robo4 1200012D01Rik|AI593217 - 9|9 A4 roundabout guidance receptor 4 protein-coding 21110 T(2;11)30H T30H - - reciprocal translocation, Chr 2 and 11, Harwell 30 other 668991 Gm9435 EG668991 - X|X A1.1 ribosomal protein L6 pseudogene pseudo 64059 Mm.270287 NM_022033 ENSMUSG00000076436 Oxct2a Oxct|Oxct2|Scot|Scot-t1 - 4|4 D2.2 3-oxoacid CoA transferase 2A protein-coding 211705 Gm4773 EG211705 - X|X B prohibitin pseudogene pseudo 61453 D6Mit150 - - 6 53.75 cM DNA segment, Chr 6, Massachusetts Institute of Technology 150 unknown 102634135 LOC102634135 - - 4 E1 60S acidic ribosomal protein P1 pseudogene pseudo 102639259 Mm.350898 NR_131207 Gm35612 - - X A5|X predicted gene, 35612 ncRNA 20778 Mm.282242 NM_016741 ENSMUSG00000037936 Scarb1 AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI - 5 64.11 cM|5 G1.1 scavenger receptor class B, member 1 protein-coding 791374 Mm.119709 Gm9860 - - - predicted gene 9860 unknown 97654 C81189 - - - expressed sequence C81189 protein-coding 102640060 XR_383493 Gm36218 - - 14 D1|14 predicted gene, 36218 ncRNA 102636275 Mm.403743 Gm26756 - - 5|5 predicted gene, 26756 ncRNA 109742 H7 H-7 - - histocompatibility 7 protein-coding 105242864 XR_881874 Gm38955 - - 7 A3|7 predicted gene, 38955 ncRNA 102633373 XR_387068 Gm31214 - - X F1|X predicted gene, 31214 ncRNA 100418375 Gm17043 - - 12|12 E serine (or cysteine) preptidase inhibitor, clade A, member 1B pseudogene pseudo 100043245 Mm.402688 NR_152201 Gm4311 - - 19 C3|19 predicted gene 4311 ncRNA 71986 Mm.307515 NM_028038 ENSMUSG00000045538 Ddx28 2410004K13Rik|AI449652|Mddx28 - 8|8 D3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 protein-coding 319157 Mm.442307 NM_175655 ENSMUSG00000069274 Hist1h4f - - 13|13 A3.1 histone cluster 1, H4f protein-coding 14870 Mm.299292 NM_013541 ENSMUSG00000060803 Gstp1 GstpiB - 19 A|19 3.75 cM glutathione S-transferase, pi 1 protein-coding 100039678 Gm16419 EG664813 - 13|13 A1 ribosomal protein S7 pseudogene pseudo 102631769 Gm30023 - - 3 F2.1|3 predicted gene, 30023 pseudo 13884 Mm.88078 NM_007954 ENSMUSG00000057400 Ces1c Ces-N|Ee-1|Ee1|Es-4|Es-N|Es1|Es4|EsN|PESN - 8 C5|8 44.99 cM carboxylesterase 1C protein-coding 66610 Mm.485545 NM_025659 ENSMUSG00000018381 Abi3 2210414K06Rik|AI987680|NESH - 11|11 D ABI gene family, member 3 protein-coding 100039629 Gm2346 - - X|X F3 predicted gene 2346 pseudo 102639909 Gm36110 - - 11|11 predicted gene, 36110 ncRNA 319798 Mm.445698 NR_040390 A730090N16Rik - - 3|3 E1 RIKEN cDNA A730090N16 gene ncRNA 105242534 XR_868602 Gm38722 - - 5 G2|5 predicted gene, 38722 ncRNA 102636412 XR_387034 Gm33486 - - X D|X predicted gene, 33486 ncRNA 102638220 XR_374588 Gm34833 - - 2 C1.3|2 predicted gene, 34833 ncRNA 102465598 NR_105955 ENSMUSG00000099230 Mir6989 Gm27885|mmu-mir-6989 - 19|19 A microRNA 6989 ncRNA 100503830 Mm.428077 NR_045099 ENSMUSG00000087675 Gm11762 - - 11 E2|11 83.96 cM predicted gene 11762 ncRNA 55947 Mm.2805 NM_018831 ENSMUSG00000025077 Dclre1a 2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086 - 19|19 D2 DNA cross-link repair 1A protein-coding 105245513 XR_873492 Gm40960 - - 13 B1|13 predicted gene, 40960 ncRNA 102466220 NR_106037 ENSMUSG00000098331 Mir7069 Gm27777|mmu-mir-7069 - 8|8 C3 microRNA 7069 ncRNA 108168105 XR_001781016 LOC108168105 - - 13 C3 uncharacterized LOC108168105 ncRNA 68986 Mm.437697 NR_040496 ENSMUSG00000087264 Gad1os 1500002O10Rik - 2|2 C2 glutamate decarboxylase 1, opposite strand ncRNA 100504063 Gm20978 - - Y|Y predicted gene, 20978 protein-coding 619842 Mm.484218 NR_033610 ENSMUSG00000080756 Gm12633 - - 4|4 C5 zinc finger protein 352 pseudogene pseudo 83396 Mm.134072 NM_031184 ENSMUSG00000014303 Glis2 Gli5|Klf16|Nkl - 16 A1|16 2.45 cM GLIS family zinc finger 2 protein-coding 105244884 XR_872726 Gm40412 - - 12 B1|12 predicted gene, 40412 ncRNA 112179 Wt3q1 - - - body weight, 3 weeks, QTL 1 unknown 105246221 XR_876635 Gm41534 - - 17 A3.1|17 predicted gene, 41534 ncRNA 52778 D13Wsu121e - - - DNA segment, Chr 13, Wayne State University 121, expressed unknown 105244465 XR_867354 Gm40068 - - 3 E1|3 predicted gene, 40068 ncRNA 56021 D5Buc46 - - - DNA segment, Chr 5, Bucan 46 unknown 108508 Ms13-5 Ms13-Ps5 - - minisatellite 13-5 detected by M13 phage probe other 85123 D4Mit165 - - 4 42.36 cM DNA segment, Chr 4, Massachusetts Institute of Technology 165 unknown 50773 Mm.390379 NM_015807 ENSMUSG00000020736 Nt5c Dnt|Dnt1|Umph-2|Umph2 - 11|11 E2 5',3'-nucleotidase, cytosolic protein-coding 102632311 XR_385628 Gm30419 - - 17 C|17 predicted gene, 30419 ncRNA 100416178 Gm17958 - - 2|2 E5 predicted gene, 17958 pseudo 102633321 Mm.417189 XR_379344 ENSMUSG00000097463 4930448E22Rik - - 9|9 A5.2 RIKEN cDNA 4930448E22 gene ncRNA 102632140 XR_867382 Gm30293 - - 3 E3|3 predicted gene, 30293 ncRNA 100034739 Mm.401643 NR_028378 Gm17762 - - 2|2 A3 predicted gene, 17762 ncRNA 102631502 Rpl15-ps4 Gm13591 - 2 B|2 24.42 cM ribosomal protein L15, pseudogene 4 pseudo 100504420 Gm12874 - - 4 D2.2|4 57.22 cM developmental pluripotency-associated protein 2-like pseudo 75629 Thap8 1700020L13Rik - 7|7 B1 THAP domain containing 8 unknown 54215 Mm.34693 NM_018767 ENSMUSG00000038304 Cd160 AU045688|By55 - 3|3 F2.1 CD160 antigen protein-coding 235415 Mm.35242 NM_146223 ENSMUSG00000039714 Cplx3 BC016632|CpxIII|ERGIC-53L|ERGL|Lamn1l|Lman1l - 9|9 B complexin 3 protein-coding 97177 Mm.410451 Gm12670 C87595 - - predicted gene 12670 protein-coding 100125258 Trbj2-4 Gm16806 - 6 19.7 cM|6 B1 T cell receptor beta joining 2-4 other 109848 Mr66-3 - - - middle repeat MR66-3 protein-coding 71864 Mm.380836 NM_027967 ENSMUSG00000021414 Fam217a 1700026J04Rik - 13|13 A3.3 family with sequence similarity 217, member A protein-coding 112219 Faq11 - - 19 51.45 cM fluctuating asymmetry QTL 11 unknown 71432 Mm.291087 NR_045274 ENSMUSG00000110018 5430437J10Rik - - 15|15 A1 RIKEN cDNA 5430437J10 gene ncRNA 69431 Mm.383483 XR_105888 ENSMUSG00000097523 1700022N22Rik - - 17|17 A3.3 RIKEN cDNA 1700022N22 gene ncRNA 433646 Mm.158997 NR_038029 ENSMUSG00000028009 1700061I17Rik - - 3|3 G1 RIKEN cDNA 1700061I17 gene ncRNA 277328 Mm.186329 NM_177781 ENSMUSG00000032769 Trpa1 Anktm1|TRPA1b - 1|1 A3 transient receptor potential cation channel, subfamily A, member 1 protein-coding 71999 Mm.276429 NM_028049 ENSMUSG00000032309 Fbxo22 0610033L19Rik|1600016C16Rik - 9|9 B F-box protein 22 protein-coding 111982 Obq2 - - 1 6.5 cM obesity QTL 2 unknown 61569 DXMit121 - - X 73.95 cM DNA segment, Chr X, Massachusetts Institute of Technology 121 unknown 100039037 Gm20796 - - 8|8 A2 proline rich 14-like pseudogene pseudo 229879 Gm4862 EG229879 - 3|3 H1 predicted gene 4862 pseudo 100316699 NR_035471 ENSMUSG00000087950 Mir1948 mir-1948|mmu-mir-1948 - 18 A1|18 6.76 cM microRNA 1948 ncRNA 319810 9530001P21Rik - - 13|13 RIKEN cDNA 9530001P21 gene protein-coding 98445 Mm.441905 AI844869 - - - expressed sequence AI844869 unknown 23817 B446L11S - - - DNA segment 446-L-11-S unknown 231506 Mm.212568 NM_172714 ENSMUSG00000035310 Lin54 AI461788 - 5|5 E4 lin-54 homolog (C. elegans) protein-coding 434282 Gm5608 - - 8 A1.1|8 predicted gene 5608 unknown 328657 Mm.425982 NM_001033403 Gm1968 - - 16|16 B2 predicted gene 1968 ncRNA 404327 Mm.377941 NM_207565 ENSMUSG00000070857 Olfr1113 MOR264-25 - 2|2 D olfactory receptor 1113 protein-coding 102639777 XR_867255 Gm36008 - - 3 C|3 predicted gene, 36008 ncRNA 216185 NM_001204921 Gm4799 EG216185 - 10|10 C1 predicted gene 4799 pseudo 109463 Pas10 - - 13 31.02 cM pulmonary adenoma susceptibility 10 unknown 673191 LOC673191 - - - nuclear body protein SP140-like pseudo 666679 Gm8233 EG666679 - 15|15 E1 INO80 complex subunit C pseudogene pseudo 387616 Mm.422613 NM_021562 ENSMUSG00000071147 Tas2r140 T2R40|T2r34|TRB3|TRB5|Tas2r13|Tas2r137|Tas2r40|Tas2r8|mTRB3|mt2r64 - 6 G1|6 64.03 cM taste receptor, type 2, member 140 protein-coding 102465886 NR_106169 ENSMUSG00000098269 Mir8094 Gm27513|mmu-mir-8094 - 17|17 B1 microRNA 8094 ncRNA 626347 Mm.333124 Igkv3-4 Igk-V21-4 - 6|6 C1 immunoglobulin kappa variable 3-4 other 17342 Mm.333284 NM_008601 ENSMUSG00000035158 Mitf BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit - 6 D3|6 45.05 cM melanogenesis associated transcription factor protein-coding 619292 Mm.390099 NM_001033797 G430095P16Rik - - 8|8 C2 RIKEN cDNA G430095P16 gene unknown 52151 D14Bur1e - - - DNA segment, Chr 14, Burmeister 1, expressed unknown 100040986 Gm15355 - - 8|8 B3.1 ribosomal protein, large, P0 pseudogene pseudo 270185 Mm.326155 NM_177770 BC043934 D030022H06 - 9|9 E3.3 cDNA sequence BC043934 unknown 105243514 LOC105243514 - - - uncharacterized LOC105243514 protein-coding 53705 D12Nyu2 D12-2 - 12 10.96 cM DNA segment, Chr 12, NYU 2 unknown 93910 D16Jhu48 312L5.SP6 - - DNA segment, Chr 16, Johns Hopkins University 48 unknown 100418429 Gm19208 - - 9|9 B guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1 pseudogene pseudo 102636091 XR_390564 Tmc4-ps Gm12483 - 4 B2|4 28.31 cM Tmc4 retrotransposed pseudogene ncRNA 100628592 NR_039583 ENSMUSG00000093087 Mir3473d mmu-mir-3473d - 8 E1|8 57.89 cM microRNA 3473d ncRNA 54562 Mm.244890 NM_019457 ENSMUSG00000022375 Lrrc6 LRTP - 15|15 D1-D2 leucine rich repeat containing 6 (testis) protein-coding 100036299 Mstat5ab - - - modifier of signal transducer and activator of transcription 5ab unknown 110589 Tcra-V10.2 - - - T cell receptor alpha, variable 10.2 other 66246 Mm.274791 NM_133676 ENSMUSG00000006289 Osgep 1500019L24Rik|GCPL-1|PRSMG1 - 14|14 C1 O-sialoglycoprotein endopeptidase protein-coding 102466650 NR_105851 ENSMUSG00000105585 Mir30f mmu-mir-30f - 4|4 D2.2 microRNA 30f ncRNA 98140 C77545 C77547 - - expressed sequence C77545 protein-coding 105245251 XR_871919 Gm40730 - - 10 C1|10 predicted gene, 40730 ncRNA 69405 Mm.396184 NR_040497 ENSMUSG00000086202 1700019E08Rik - - 2|2 B RIKEN cDNA 1700019E08 gene ncRNA 100038648 Mm.482648 Gm10465 - - 12 C1|12 predicted gene 10465 protein-coding 383420 Gm5241 EG383420 - 18|18 B1 actin, beta pseudogene pseudo 108183 Rpl7-ps1 Surf-3ps - - ribosomal protein L7, pseudogene 1 pseudo 58203 Mm.116687 NM_021394 ENSMUSG00000027514 Zbp1 2010010H03Rik|Dai|Dlm1|mZaDLM - 2|2 H3 Z-DNA binding protein 1 protein-coding 102634579 Gm32125 - - 11|11 predicted gene, 32125 protein-coding 16420 Mm.98193 NM_021359 ENSMUSG00000026971 Itgb6 2210409C20Rik|4831415H04Rik - 2 C1.2|2 34.81 cM integrin beta 6 protein-coding 99349 Mm.25661 NM_026992 ENSMUSG00000027166 Dnajc24 1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3 - 2|2 E3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 100416255 LOC100416255 - - 4|4 C6 ribosomal protein L9 pseudogene pseudo 14853 Mm.20826 NM_008179 ENSMUSG00000071723 Gspt2 - - X|X C3 G1 to S phase transition 2 protein-coding 111960 Iap5rc21 - - - intracisternal A-type particle, U5 region, SINE repeat c-21 other 110094 Mm.350712 NM_172783 ENSMUSG00000031295 Phka2 6330505C01Rik|D330034O08|Phk - X F4|X 73.95 cM phosphorylase kinase alpha 2 protein-coding 665638 Gm7724 EG665638 - 8|8 A1.3 heat shock protein 1 (chaperonin) pseudogene pseudo 12021 Mm.10764 NM_007525 ENSMUSG00000026196 Bard1 - - 1|1 C3 BRCA1 associated RING domain 1 protein-coding 105245396 LOC105245396 - - 12 A1.3 hippocalcin-like protein 1 pseudo 69953 Mm.286863 NM_027274 ENSMUSG00000049881 2810025M15Rik AI429618 - 1|1 H1 RIKEN cDNA 2810025M15 gene ncRNA 110120429 LOC110120429 - - - VISTA enhancer mm1601 biological-region 105244387 XR_867056 Gm40006 - - 2 H3|2 predicted gene, 40006 ncRNA 102637336 XR_373326 4930470B04Rik - - 1|1 B RIKEN cDNA 4930470B04 gene ncRNA 692145 Igkv4-83 kg4 - 6|6 C1 immunoglobulin kappa chain variable 4-83 pseudo 237300 Mm.444821 NM_177706 ENSMUSG00000044624 Gm4922 4933423E17|EG237300 - 10 A3|10 predicted gene 4922 protein-coding 102636620 Mm.402328 NR_130345 ENSMUSG00000086111 Gm15326 - - 13 D2.2|13 63.63 cM predicted gene 15326 ncRNA 630342 Vhvgam3.8.a4.102 - - 12|12 Ig heavy chain variable region VHVGAM3.8.a4.102 other 100040531 Mm.457987 NM_001166627 ENSMUSG00000095677 Dynlt1f 100040631|Dynlt1e - 17 A1|17 dynein light chain Tctex-type 1F protein-coding 209027 Mm.127731 NM_144795 ENSMUSG00000025140 Pycr1 P5CR 1|P5CR1 - 11|11 E2 pyrroline-5-carboxylate reductase 1 protein-coding 112284 Pas3 Pas-3 - 19 13.82 cM pulmonary adenoma susceptibility 3 unknown 111274024 LOC111274024 - - - nuclear transport factor 2 pseudogene pseudo 100861727 LOC100861727 - - 4 A5 protein FAM205A-like pseudo 102637200 LOC102637200 - - 18 A1 prothymosin alpha pseudogene pseudo 100418129 Gm12825 - - 4|4 D1 selection and upkeep of intraepithelial T cells 3 pseudogene pseudo 269180 Mm.5294 NM_030266 ENSMUSG00000026113 Inpp4a 107kDa|9630012D15|D130048C09Rik|R74740 - 1 B|1 15.46 cM inositol polyphosphate-4-phosphatase, type I protein-coding 75507 Mm.443255 NM_029315 ENSMUSG00000093668 Pou5f2 1700013G10Rik|SPRM-1|Sprm1 - 13|13 C1 POU domain class 5, transcription factor 2 protein-coding 627967 Rps4l-ps EG627967|Gm6816 - 7|7 F1 ribosomal protein S4-like, pseudogene pseudo 102465550 NR_105877 ENSMUSG00000099283 Mir6912 Gm27990|mmu-mir-6912 - 10|10 C1 microRNA 6912 ncRNA 78473 Mm.395840 NM_001033186 ENSMUSG00000057058 Skap1 1700091G21Rik|Scap1|Skap-55 - 11|11 D src family associated phosphoprotein 1 protein-coding 109280122 LOC109280122 Mm1371 - - VISTA enhancer mm1371 biological-region 102637823 XR_389788 Gm34536 - - 5 B1|5 predicted gene, 34536 ncRNA 102634608 XR_376125 Gm16559 - - 3 G3|3 64.17 cM predicted gene 16559 ncRNA 545527 Mm.357722 NM_001081262 ENSMUSG00000070471 Erich6 4932431H17Rik|Fam194a - 3|3 D glutamate rich 6 protein-coding 105247227 LOC105247227 - - 4 E2 60S ribosomal protein L24 pseudogene pseudo 78052 Mm.160043 NM_030028 ENSMUSG00000013091 Tmem190 4930572D21Rik - 7|7 A1 transmembrane protein 190 protein-coding 105244271 XR_866657 Gm39912 - - 2 E5|2 predicted gene, 39912 ncRNA 102640973 Gm36909 - - 2|2 predicted gene, 36909 ncRNA 102641809 LOC102641809 - - - non-histone chromosomal protein HMG-14 protein-coding 102635086 XR_870786 Gm32510 - - 9 B|9 predicted gene, 32510 ncRNA 102632503 XR_388879 Gm30561 - - 11 B5|11 predicted gene, 30561 ncRNA 109279998 LOC109279998 Mm878 - - VISTA enhancer mm878 biological-region 108032 Fhe - - - Friend helper virus erythroblastosis susceptibility unknown 108168261 XR_001781744 Gm46534 - - 15 D3|15 predicted gene, 46534 ncRNA 217866 Mm.27397 NM_183016 ENSMUSG00000021279 Cdc42bpb MRCKb - 12 F1|12 60.94 cM CDC42 binding protein kinase beta protein-coding 667999 Gm8919 EG667999 - 3|3 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 57437 Mm.196269 NM_020585 ENSMUSG00000015341 Golga7 AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586 - 8|8 A2 golgi autoantigen, golgin subfamily a, 7 protein-coding 85129 D7Mit202 - - 7 43.82 cM DNA segment, Chr 7, Massachusetts Institute of Technology 202 unknown 102633701 Mm.448409 Gm31462 - - 15|15 predicted gene, 31462 ncRNA 17292 Mm.1404 NM_008588 ENSMUSG00000030544 Mesp1 bHLHc5 - 7 D2|7 45.16 cM mesoderm posterior 1 protein-coding 19415 Mm.41209 NM_013832 ENSMUSG00000029602 Rasal1 MRASAL - 5|5 F RAS protein activator like 1 (GAP1 like) protein-coding 102640998 XR_383509 Gm36924 - - 14 D1|14 predicted gene, 36924 ncRNA 100862245 XM_017318913 ENSMUSG00000094722 LOC100862245 - - - PRAME family member 8-like protein-coding 110525 Mnm - - - modifier of neuromuscular degeneration unknown 668440 Rpl23a-ps12 Gm12761 - 7|7 B1 ribosomal protein L23A, pseudogene 12 pseudo 319394 D230019A03Rik - - 4|4 RIKEN cDNA D230019A03 gene protein-coding 105246313 XR_876939 Gm41615 - - 17 E1.3|17 predicted gene, 41615 ncRNA 52738 D19Cct1e - - - DNA segment, Chr 19, Catherine C. Thompson 1, expressed unknown 102635569 Mm.297663 XR_379615 Gm27230 - - 9 D|9 predicted gene 27230 ncRNA 102465699 NR_106072 ENSMUSG00000099222 Mir7213 Gm27377|mmu-mir-7213 - 15|15 E1 microRNA 7213 ncRNA 620132 Gm6129 EG620132 - 13|13 A3.3 predicted gene 6129 pseudo 233870 Mm.197829 NM_172745 ENSMUSG00000073838 Tufm 2300002G02Rik|C76308|C76389|EF-TuMT|EFTU - 7|7 F3 Tu translation elongation factor, mitochondrial protein-coding 77289 9430034F23Rik - - 11|11 RIKEN cDNA 9430034F23 gene unknown 73121 Mm.296138 NM_028443 ENSMUSG00000037962 Rflna 3110032G18Rik|Fam101a|cfm|cfm2 - 5|5 G1.1 refilin A protein-coding 102467443 n-TVaac1 n-Tv1 - 4 D3|4 nuclear encoded tRNA valine 1 (anticodon AAC) tRNA 258821 Mm.297704 NM_146824 ENSMUSG00000049648 Olfr273 MOR262-8 - 4|4 B2 olfactory receptor 273 protein-coding 105243651 XR_880363 Gm39490 - - 11 E2|11 predicted gene, 39490 ncRNA 27941 D5Nds2 - - 5 38.44 cM DNA segment, Chr 5, Nuffield Department of Surgery 2 unknown 692112 Igkv13-55-1 gx33r - 6|6 C1 immunoglobulin kappa chain variable 13-55-1 pseudo 236794 Mm.17815 NM_172780 ENSMUSG00000060681 Slc9a6 3732426M05|6430520C02Rik|NHE6|mKIAA0267 - X|X A6 solute carrier family 9 (sodium/hydrogen exchanger), member 6 protein-coding 52399 D7Ertd685e - - 7 25.33 cM DNA segment, Chr 7, ERATO Doi 685, expressed unknown 102640575 LOC102640575 - - 1 G1 cytochrome c oxidase subunit 7B, mitochondrial pseudogene pseudo 109801 Mm.261984 NM_025374 ENSMUSG00000024026 Glo1 0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo - 17 A3.3|17 15.69 cM glyoxalase 1 protein-coding 667243 Gm8535 EG667243 - 5|5 F ribosomal protein L19 pseudogene pseudo 61775 D3Mit262 - - 3 76.06 cM DNA segment, Chr 3, Massachusetts Institute of Technology 262 unknown 226151 Mm.212609 NM_172638 ENSMUSG00000036097 Slf2 3632432H19|Fam178a - 19|19 C3 SMC5-SMC6 complex localization factor 2 protein-coding 102634980 XR_378707 Gm32429 - - 8 A1.1|8 predicted gene, 32429 ncRNA 72807 Mm.303790 NM_001080941 ENSMUSG00000078994 Zfp429 2810487A22Rik|AI929863|Rsl2 - 13|13 B3 zinc finger protein 429 protein-coding 102638589 XR_384314 Gm35118 - - 15 E2|15 predicted gene, 35118 ncRNA 105247030 Gm42212 - - 3|3 predicted gene, 42212 ncRNA 16302 In(7)13Rk-p In(7)13Rk|In13Rk - - inversion, Chr 7, Roderick 13, proximal other 668641 Gm12733 - - 11|11 B5 ribosomal protein S2 pseudogene pseudo 27582 D5Buc32 249L8.SP6 - 5 38.44 cM DNA segment, Chr 5, Bucan 32 unknown 108168334 XR_001782173 Gm46590 - - 17 E1.1|17 predicted gene, 46590 ncRNA 100035431 Hfem3 - - - Hfe modifier 3 unknown 12679 ci - - - circler unknown 18375 olt - - - oligotriche unknown 108168901 Gm43116 - - 3 G3|3 predicted gene 43116 pseudo 432961 LOC432961 - - 15|15 D2 uncharacterized LOC432961 unknown 69986 Mm.490941 NR_040523 ENSMUSG00000100121 1700025N23Rik - - 6|6 B1 RIKEN cDNA 1700025N23 gene ncRNA 19155 Mm.29824 NM_008942 ENSMUSG00000001441 Npepps AAP-S|MP100|Psa|R74825|goku - 11 D|11 60.95 cM aminopeptidase puromycin sensitive protein-coding 100416215 Gm17972 - - 1|1 C3 predicted gene, 17972 pseudo 102637106 Gm34002 - - 8|8 predicted gene, 34002 ncRNA 67280 Mm.390495 NR_045466 ENSMUSG00000113331 3110009F21Rik - - 12|12 F1 RIKEN cDNA 3110009F21 gene ncRNA 71155 4933424C09Rik - - 5|5 RIKEN cDNA 4933424C09 gene protein-coding 677613 Gm9721 - - 14|14 E2.1 hydroxyacid oxidase 2 pseudogene pseudo 100043825 Gm4675 - - 14 E4|14 predicted gene 4675 protein-coding 52609 Mm.323442 NM_144811 ENSMUSG00000053411 Cbx7 1600014J01Rik|AI851678|D15Ertd417e - 15 E1|15 37.85 cM chromobox 7 protein-coding 105372 Mm.28221 NM_178918 ENSMUSG00000041747 Utp15 AW544865 - 13|13 D1 UTP15 small subunit processome component protein-coding 14430 Mm.439669 NM_016658 ENSMUSG00000036073 Galt AW553376 - 4 A5|4 22.07 cM galactose-1-phosphate uridyl transferase protein-coding 665246 Gm7553 - - 1 C5|1 potassium channel tetramerisation domain containing 3 pseudogene pseudo 52020 Mm.25923 NM_177465 ENSMUSG00000054134 Umodl1 D17Ertd488e - 17 A3.3|17 15.8 cM uromodulin-like 1 protein-coding 320014 Mm.403203 NR_040705 ENSMUSG00000109473 B930025P03Rik - - 8|8 A1.1 RIKEN cDNA B930025P03 gene ncRNA 625004 Gm6543 EG625004 - 5|5 A3 predicted gene 6543 pseudo 102634646 Mm.348378 NR_151694 Gm12915 - - 4 D2.2|4 57.89 cM predicted gene 12915 ncRNA 102635120 XR_378709 ENSMUSG00000108961 Gm32540 - - 8 A1.1|8 predicted gene, 32540 ncRNA 56455 Mm.256858 NM_019682 ENSMUSG00000009013 Dynll1 Dlc8|Dnclc1|Pin - 5|5 F dynein light chain LC8-type 1 protein-coding 329872 Mm.242337 NM_177863 ENSMUSG00000059049 Frem1 BC037594|D430009N09|D630008K06|crf11|eye|eyes2|heb|qbrick - 4|4 C3 Fras1 related extracellular matrix protein 1 protein-coding 100042318 Gm3787 - - 15 E1|15 predicted gene 3787 protein-coding 192192 Mm.21297 NM_138676 ENSMUSG00000089832 Shkbp1 B930062H15Rik|Sb1 - 7|7 A3 Sh3kbp1 binding protein 1 protein-coding 26388 Mm.218770 NM_008327 ENSMUSG00000026535 Ifi202b Ifbip-1|Ifi202|Ifi202a|p202 - 1|1 H3 interferon activated gene 202B protein-coding 264134 Mm.253446 NM_153600 ENSMUSG00000056832 Ttc26 9330141E21Rik|9430097H08Rik|Ift56|hop|hpy - 6|6 B1 tetratricopeptide repeat domain 26 protein-coding 52686 Mm.270091 NM_172567 ENSMUSG00000020691 Mettl2 2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1 - 11 E1|11 68.61 cM methyltransferase like 2 protein-coding 66550 2010109N18Rik - - 8|8 RIKEN cDNA 2010109N18 gene protein-coding 112042 Kwq1 - - - kidney weight QTL 1 unknown 108199 Cyp2b20-ps1 - - - cytochrome P450, 2b20, pseudogene 1 pseudo 100041494 Gm3370 - - 14|14 C1 predicted gene 3370 pseudo 100035293 Asdq5 - - - atrial septal defect QTL 5 unknown 105247043 XR_880864 Gm42221 - - 5 A3|5 predicted gene, 42221 ncRNA 100035081 W6q3 - - - weight 6 weeks QTL 3 unknown 108168079 XR_001780922 Gm28707 - - 13 A4|13 predicted gene 28707 ncRNA 102635325 Gm21774 - - Y|Y predicted gene, 21774 protein-coding 105243891 XR_865295 Gm26524 - - 1 A5|1 predicted gene, 26524 ncRNA 171211 Mm.159671 NM_133643 ENSMUSG00000095105 Edaradd 1810032E07Rik|5830469M23Rik|A630043P06|cr - 13 A1|13 4.77 cM EDAR (ectodysplasin-A receptor)-associated death domain protein-coding 19563 Rb(5.13)70Lub Rb70Lub - - Robertsonian translocation, Chr 5 and 13, Lubeck 70 other 70118 Mm.172947 NM_027323 ENSMUSG00000029346 Srrd 2810002G02Rik|Srr1 - 5|5 F SRR1 domain containing protein-coding 100034837 Ltsd3 - - 8 12.86 cM lung tumor shape-determining 3 unknown 108168949 Gm46856 - - 4 A5|4 predicted gene, 46856 pseudo 56807 Mm.102278 NM_020270 ENSMUSG00000040722 Scamp5 Sc5 - 9|9 B secretory carrier membrane protein 5 protein-coding 110662 Seao Sea - 19|19 S13 avian erythroblastosis oncogene homolog protein-coding 17713 Mm.21535 NM_024478 ENSMUSG00000029198 Grpel1 AA408748|mt-GrpE#1|mt-Grpel1 - 5|5 B3 GrpE-like 1, mitochondrial protein-coding 258707 Olfr1343-ps1 MOR258-4P - 4|4 D2.1 olfactory receptor 1343, pseudogene 1 pseudo 80708 Mm.236650 NM_028733 ENSMUSG00000027257 Pacsin3 4921507A02Rik|6330413E15Rik|AW413130 - 2|2 E1 protein kinase C and casein kinase substrate in neurons 3 protein-coding 27696 D16Ros1 - - - DNA segment, Chr 16, Roswell Park 1 unknown 76111 5830490A12Rik - - - RIKEN cDNA 5830490A12 gene protein-coding 105245216 Gm40700 - - 10|10 predicted gene, 40700 protein-coding 492978 Idd22 Idd21 - 8 43.06 cM insulin dependent diabetes susceptibility 22 unknown 68240 Mm.29073 NM_026632 ENSMUSG00000012483 Rpa3 14kDa|C330026P08Rik - 6|6 A1 replication protein A3 protein-coding 100861881 Gm21294 - - Y|Y predicted gene, 21294 protein-coding 100093689 Trnas-acu - - - transfer RNA serine (anticodon ACU) tRNA 68224 Mm.138490 NM_026625 ENSMUSG00000021545 1700067P10Rik - - 17|17 C RIKEN cDNA 1700067P10 gene protein-coding 101055890 XM_006515301 Gm29738 - - 12 A1.2|12 predicted gene, 29738 protein-coding 112116 Bgeq8 - - 10 66.75 cM body growth early QTL 8 unknown 383297 Gm5232 EG383297 - 17|17 A3.2 proteasome (prosome, macropain) subunit, beta type 3 pseudogene pseudo 19245 Mm.390807 NM_008975 ENSMUSG00000059895 Ptp4a3 AV088979|Prl-3|pPtp4a3 - 15|15 D3 protein tyrosine phosphatase 4a3 protein-coding 102633361 XR_386187 Gm31205 - - 18 B3|18 predicted gene, 31205 ncRNA 102631873 XR_375748 Gm30097 - - 3 E3|3 predicted gene, 30097 ncRNA 108168895 XR_001783978 ENSMUSG00000106365 Gm43568 - - 3 G1|3 predicted gene 43568 ncRNA 102633529 Gm29333 - - Y|Y predicted gene 29333 ncRNA 14103 Mm.3355 NM_010177 ENSMUSG00000000817 Fasl APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld - 1 H2.1|1 69.95 cM Fas ligand (TNF superfamily, member 6) protein-coding 674819 Gm9630 - - 15|15 A1 predicted gene 9630 pseudo 70683 Mm.29631 NM_175158 ENSMUSG00000004356 Utp20 3830408P06Rik|AA617408|Drim|mDRIM|mDRIN - 10|10 C1 UTP20 small subunit processome component protein-coding 105246477 XR_877508 Gm41762 - - 18 E1|18 predicted gene, 41762 ncRNA 110380 Mm.40796 NM_172441 ENSMUSG00000045180 Shroom2 4832440C16|Apxl|C630003H05Rik|Shrm2 - X F3|X 68.46 cM shroom family member 2 protein-coding 102633503 XR_382465 Gm31313 - - 13 B1|13 predicted gene, 31313 ncRNA 16703 Mm.13979 NM_010675 ENSMUSG00000059632 Krtap8-1 AI326176 - 16|16 C3.3 keratin associated protein 8-1 protein-coding 110120491 LOC110120491 - - - VISTA enhancer mm1295 biological-region 259005 Mm.377784 NM_147003 ENSMUSG00000047444 Olfr139 M5|MOR255-2 - 11|11 B4 olfactory receptor 139 protein-coding 102635925 Gm29189 - - Y|Y predicted gene 29189 ncRNA 209773 Mm.440021 NM_172477 ENSMUSG00000038456 Dennd2a B930096L08Rik|C130031G22|mKIAA1277 - 6|6 B1 DENN/MADD domain containing 2A protein-coding 231874 Mm.320432 NM_177682 ENSMUSG00000029617 Ccz1 AU022870 - 5|5 G2 CCZ1 vacuolar protein trafficking and biogenesis associated protein-coding 18288 oed - - - edematous unknown 102633391 XR_377650 Gm31226 - - 6 B2.3|6 predicted gene, 31226 ncRNA 404291 Mm.160375 NM_207548 ENSMUSG00000090411 Vmn1r174 V1rd22 - 7|7 A3 vomeronasal 1 receptor 174 protein-coding 62717 D18Mit121 - - 18 29.33 cM DNA segment, Chr 18, Massachusetts Institute of Technology 121 unknown 71643 Mm.274884 NM_197997 ENSMUSG00000051278 Zgrf1 4930422G04Rik|AI448607 - 3|3 G2 zinc finger, GRF-type containing 1 protein-coding 105246460 Gm41746 - - 18|18 predicted gene, 41746 ncRNA 399607 Mm.406263 D230019N24Rik - - - RIKEN cDNA D230019N24 gene protein-coding 333605 Mm.426168 NM_001033330 ENSMUSG00000049176 Frmpd4 Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso - X|X F5 FERM and PDZ domain containing 4 protein-coding 108169102 XM_017321264 Gm42627 - - 5 F|5 predicted gene 42627 protein-coding 105246451 Gm41740 - - 18|18 predicted gene, 41740 ncRNA 20613 Mm.2093 NM_011427 ENSMUSG00000042821 Snai1 Sna|Sna1|Snail|Snail1 - 2 H3|2 87.33 cM snail family zinc finger 1 protein-coding 105245845 XR_874909 Gm41234 - - 14 E2.3|14 predicted gene, 41234 ncRNA 329126 Gm5100 EG329126 - 1 B|1 60S ribosomal protein L13-like pseudo 434769 Mm.244139 NM_001024850 ENSMUSG00000053909 Rhox10 - - X|X A3.3 reproductive homeobox 10 protein-coding 100417911 Gm18896 - - 16|16 B1 heterogeneous nuclear ribonucleoprotein H2 pseudogene pseudo 16898 Mm.157452 NM_008503 ENSMUSG00000044533 Rps2 Llrep3|S4 - 17|17 A3.3 ribosomal protein S2 protein-coding 102637630 XR_389053 Gm34392 - - 11 E1|11 predicted gene, 34392 ncRNA 105243036 Gm39073 - - 7|7 predicted gene, 39073 ncRNA 21981 Mm.313076 NM_011625 ENSMUSG00000021285 Ppp1r13b AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85 - 12|12 F1 protein phosphatase 1, regulatory (inhibitor) subunit 13B protein-coding 100036008 Ity5 - - - immunity to S. typhimurium 5 unknown 111407 Emv45 Emv-45 - - endogenous ecotropic MuLV 45 other 67252 Mm.44529 NM_026056 ENSMUSG00000021373 Cap2 2810452G09Rik|AV045235 - 13|13 A5 CAP, adenylate cyclase-associated protein, 2 (yeast) protein-coding 62225 D16Mit95 - - - DNA segment, Chr 16, Massachusetts Institute of Technology 95 unknown 171545 Huc2 - - - H19 upstream conserved region 2 biological-region 100502644 Mm.11689 AA419673 - - 3|3 expressed sequence AA419673 unknown 16755 l7Rn1 l(7)-1Rn - - lethal, Chr 7, Rinchik 1 unknown 108169075 XR_001784989 Gm46925 - - 5 G2|5 predicted gene, 46925 ncRNA 102634224 Gm28829 - - Y|Y predicted gene 28829 ncRNA 105989 Mm.17836 AU045094 - - - expressed sequence AU045094 unknown 102631546 XR_373964 Gm29857 - - 2 A1|2 predicted gene, 29857 ncRNA 105245989 Gm41357 - - 15|15 predicted gene, 41357 ncRNA 105243310 XR_879282 Gm39268 - - 8 E1|8 predicted gene, 39268 ncRNA 791314 Gm9874 - - - predicted gene 9874 unknown 100035041 Rthyd4 - - 14 33.21 cM resistance to thymic deletion 4 unknown 71751 Mm.420837 NM_172821 ENSMUSG00000033618 Map3k13 C130026N12Rik|LZK - 16|16 B1 mitogen-activated protein kinase kinase kinase 13 protein-coding 212813 Gm232 - - 10|10 A4 general transcription factor IIIC, polypeptide pseudogene pseudo 108511954 Btg2r3 - - 1 E4 Btg2R3 erythroid cis-regulatory module biological-region 100038532 Mm.387164 Gm10822 - - - predicted gene 10822 unknown 15168 Mm.389461 NM_008227 ENSMUSG00000028051 Hcn3 BCNG-4|Bcng4|Hac3|Hcn4 - 3|3 F1 hyperpolarization-activated, cyclic nucleotide-gated K+ 3 protein-coding 68743 Mm.282751 NM_028390 ENSMUSG00000036777 Anln 1110037A17Rik|2900037I21Rik|C78101|Scraps - 9|9 A3 anillin, actin binding protein protein-coding 102640430 XR_386761 Gm36493 - - 19 C3|19 predicted gene, 36493 ncRNA 70962 Mm.410833 NR_045149 ENSMUSG00000108128 4922502N22Rik - - 6|6 G1 RIKEN cDNA 4922502N22 gene ncRNA 102641211 Mm.406605 LOC102641211 - - - uncharacterized LOC102641211 ncRNA 233905 Mm.491243 NM_172749 ENSMUSG00000049739 Zfp646 6820429M01 - 7|7 F3 zinc finger protein 646 protein-coding 102640594 XM_017321251 Gm28710 - - 5 A3|5 predicted gene 28710 protein-coding 100036278 Rthyd3 - - 14 6.43 cM resistance to thymic deletion 3 unknown 61524 D8Mit169 - - 8 70.42 cM DNA segment, Chr 8, Massachusetts Institute of Technology 169 unknown 75463 1700008A23Rik - - 9|9 RIKEN cDNA 1700008A23 gene protein-coding 27210 NR_002455 ENSMUSG00000065878 Snord34 Rnu34|U34 - 7|7 B3 small nucleolar RNA, C/D box 34 snoRNA 66733 Mm.358699 NM_025734 ENSMUSG00000045246 Kcng4 4921535I01Rik|AW049024|KV6.3|KV6.4 - 8|8 E1 potassium voltage-gated channel, subfamily G, member 4 protein-coding 100503381 Gm14022 - - 2|2 62.64 cM predicted gene 14022 ncRNA 105244129 XR_866159 Gm39797 - - 2 B|2 predicted gene, 39797 ncRNA 105245209 XR_871831 Gm40694 - - 10 C1|10 predicted gene, 40694 ncRNA 105243703 Gm14830 - - X|X 41.71 cM predicted gene 14830 pseudo 319682 Mm.136046 NR_102304 ENSMUSG00000085171 D830026I12Rik - - 6|6 A2 RIKEN cDNA D830026I12 gene ncRNA 105243269 Mm.410862 XR_879144 1700082M22Rik - - 8|8 D3 RIKEN cDNA 1700082M22 gene ncRNA 71337 5430402M21Rik - - 7|7 A1 RIKEN cDNA 5430402M21 gene protein-coding 78758 Mm.160125 NR_131110 ENSMUSG00000085851 4921518K17Rik - - 12|12 C1 RIKEN cDNA 4921518K17 gene ncRNA 668788 Gm9361 EG668788 - 3 G1|3 lysine (K)-specific demethylase 4D pseudogene pseudo 320526 Mm.339456 A830080H07Rik - - 10|10 RIKEN cDNA A830080H07 gene protein-coding 100503209 Mm.440722 A530041M06Rik - - 3|3 RIKEN cDNA A530041M06 gene unknown 14554 Mm.439175 Gdap9 - - - ganglioside-induced differentiation-associated-protein 9 protein-coding 545326 Gm5829 EG545326|Gabarapl2-ps1_652.1 - 1|1 C3 GABA(A) receptor-associated protein like 2 pseudogene 1_652.1 pseudo 71713 Mm.46063 NM_027879 ENSMUSG00000038446 Cdc40 1200003H23Rik|EHB3|PRP17 - 10|10 B1 cell division cycle 40 protein-coding 61315 D3Mit157 - - 3 42.04 cM DNA segment, Chr 3, Massachusetts Institute of Technology 157 unknown 105245176 XR_873124 Gm40666 - - 13 A1|13 predicted gene, 40666 ncRNA 110120481 LOC110120481 - - - VISTA enhancer mm1407 biological-region 100042498 Mm.482242 NR_030711 ENSMUSG00000085148 Mir22hg 2210403K04Rik|mir-22 - 11|11 B5 Mir22 host gene (non-protein coding) ncRNA 76784 Mm.285429 NM_133767 ENSMUSG00000020459 Mtif2 2310038D14Rik|2410112O06Rik|IF-2(Mt)|IF-2mt|IF2(mt) - 11|11 A3.3 mitochondrial translational initiation factor 2 protein-coding 74940 4930474A20Rik - - 2|2 RIKEN cDNA 4930474A20 gene protein-coding 69234 Mm.20301 NM_026999 ENSMUSG00000045251 Zfp688 2810407K09Rik|AI326029 - 7|7 F3 zinc finger protein 688 protein-coding 330731 Gm5117 EG330731 - 8|8 A3 trimethylguanosine synthase homolog pseudogene pseudo 102638176 XR_390592 Gm34802 - - 4 B3|4 predicted gene, 34802 ncRNA 100038667 Mm.490916 Macrod2os2 Gm14105 - - MACRO domain containing 2, opposite strand 2 unknown 93708 Mm.247203 NM_033583 ENSMUSG00000102543 Pcdhgc5 - - 18|18 B3 protocadherin gamma subfamily C, 5 protein-coding 102634742 Gm26631 - - 9|9 predicted gene, 26631 ncRNA 14276 Mm.439666 NM_008035 ENSMUSG00000032725 Folr2 FBP2|FR-P3|FR-beta|Folbp-2|Folbp2 - 7|7 E2 folate receptor 2 (fetal) protein-coding 72568 Mm.275044 NM_175186 ENSMUSG00000058729 Lin9 2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9 - 1|1 H4 lin-9 homolog (C. elegans) protein-coding 100861482 NR_046129 ENSMUSG00000095410 n-R5s121 Rn5s12 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 121 rRNA 27263 Mm.371809 NM_013741 ENSMUSG00000073458 Smok2a Smok2 - 17|17 A1 sperm motility kinase 2A protein-coding 61249 D2Mit120 - - 2 19.38 cM DNA segment, Chr 2, Massachusetts Institute of Technology 120 unknown 102638363 Gm34946 - - 17|17 predicted gene, 34946 ncRNA 13927 X83325 ESTM10 - 11|11 EST X83325 protein-coding 102635408 XR_878334 Gm32758 - - 1 C5|1 predicted gene, 32758 ncRNA 105244481 XR_001783868 Gm40082 - - 3 F1|3 predicted gene, 40082 ncRNA 105243826 LOC105243826 WI1-2389C6.2 - - uncharacterized LOC105243826 ncRNA 723906 NR_029646 ENSMUSG00000065521 Mir296 Mirn296|mir-296|mmu-mir-296 - 2|2 H4 microRNA 296 ncRNA 98783 AA409368 - - - expressed sequence AA409368 unknown 270152 Mm.190461 NM_001005421 ENSMUSG00000048534 Jaml AMICA|Amica1|Crea7|Gm638 - 9|9 A5.2 junction adhesion molecule like protein-coding 22629 Mm.332314 NM_011738 ENSMUSG00000018965 Ywhah - - 5|5 B1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide protein-coding 17138 Mm.326653 NM_020016 ENSMUSG00000055746 Magea2 Mage-a2 - X F3|X 72.38 cM melanoma antigen, family A, 2 protein-coding 100041942 Gm3584 - - 7|7 A1 predicted gene 3584 pseudo 68059 Mm.275191 NM_080556 ENSMUSG00000025544 Tm9sf2 1500001N15Rik|AA536814|D14Ertd64e|P76 - 14 E5|14 65.86 cM transmembrane 9 superfamily member 2 protein-coding 105246572 XM_011247418 Gm41844 - - 19 C3|19 predicted gene, 41844 protein-coding 100418083 Gm18989 - - 13|13 D2.3 mitochondrial translational initiation factor 3 pseudogene pseudo 12043 Mm.257460 NM_009741 ENSMUSG00000057329 Bcl2 AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik - 1 E2.1|1 49.76 cM B cell leukemia/lymphoma 2 protein-coding 78135 4921501M06Rik - - 11|11 RIKEN cDNA 4921501M06 gene protein-coding 114153 Taste1 - - 2 39.53 cM taste-saccharin preference 1 unknown 102634305 XR_383661 Gm31921 - - 14 D3|14 predicted gene, 31921 ncRNA 100126083 Mtbcq2 - - - multiple trait body composition QTL 2 unknown 100038490 Mm.97885 G370062D05Rik - - - RIKEN cDNA G370062D05 gene ncRNA 433632 Mm.212421 NM_001033779 Gm5544 EG433632 - 3 F2.2|3 predicted gene 5544 protein-coding 66795 Mm.235385 NM_025770 ENSMUSG00000021619 Atg10 5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l - 13|13 C3 autophagy related 10 protein-coding 20418 Mm.131870 NM_009167 ENSMUSG00000021448 Shc3 N-Shc|Rai|ShcC - 13 A5|13 26.12 cM src homology 2 domain-containing transforming protein C3 protein-coding 68501 Mm.27762 NM_026746 ENSMUSG00000059586 Nsmce2 1110014D18Rik|AI661537 - 15|15 D1 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase protein-coding 101056093 Mm.491760 LOC101056093 - - - uncharacterized LOC101056093 ncRNA 258215 Mm.377380 NM_001011871 ENSMUSG00000058244 Olfr506 MOR204-23 - 7|7 E3 olfactory receptor 506 protein-coding 105242602 Gm38770 - - 6|6 predicted gene, 38770 ncRNA 665509 Gm7665 EG665509 - 18|18 A1 S100 calcium binding protein A11 (calgizzarin) pseudogene pseudo 258107 Olfr440-ps1 MOR261-7P - 6|6 B2.1 olfactory receptor 440, pseudogene 1 pseudo 74415 Mm.458174 4932442E05Rik - - 10|10 D2 RIKEN cDNA 4932442E05 gene protein-coding 74267 Mm.116682 NM_028843 ENSMUSG00000066383 Iqcf1 1700055J15Rik - 9|9 F1 IQ motif containing F1 protein-coding 668461 Rpl23a-ps2 Gm12323 - 11|11 B4 ribosomal protein L23A, pseudogene 2 pseudo 93939 D16Jhu79 462O14.T7 - - DNA segment, Chr 16, Johns Hopkins University 79 unknown 75697 Mm.105353 NM_001081314 ENSMUSG00000091956 C2cd4b 3300001A09Rik|Fam148b - 9|9 C C2 calcium-dependent domain containing 4B protein-coding 105245181 XR_871740 Gm40669 - - 10 B4|10 predicted gene, 40669 ncRNA 100416674 Gm11609 - - 1|1 C2 lactate dehydrogenase B pseudogene pseudo 102635580 XR_386880 Gm32874 - - X A1.1|X predicted gene, 32874 ncRNA 75169 4930534I15Rik - - 2|2 RIKEN cDNA 4930534I15 gene protein-coding 52065 Mm.103246 NM_001081279 ENSMUSG00000070056 Mfhas1 2310066G09Rik|D8Ertd91e - 8 A4|8 21.16 cM malignant fibrous histiocytoma amplified sequence 1 protein-coding 93681 Mm.290601 NM_139141 ENSMUSG00000063894 Zkscan8 2510038J07Rik|D430019P06Rik|LD5-1|Zfp192 - 13|13 A3.1 zinc finger with KRAB and SCAN domains 8 protein-coding 105611 AU040096 - - 14|14 C3 expressed sequence AU040096 other 73836 Mm.289716 NM_028662 ENSMUSG00000037089 Slc35b2 1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1 - 17|17 B3 solute carrier family 35, member B2 protein-coding 14128 Mm.1233 NM_013517 ENSMUSG00000005540 Fcer2a CD23|Fce2|Fcer2|Ly-42 - 8 A1.1|8 1.92 cM Fc receptor, IgE, low affinity II, alpha polypeptide protein-coding 102635433 XR_881841 Gm32772 Gm45035 - 7 A2|7 predicted gene, 32772 ncRNA 668115 NM_001177430 Gm13697 - - 2|2 D CWC22 spliceosome-associated protein homolog pseudogene pseudo 59033 Mm.209856 NM_021530 ENSMUSG00000023032 Slc4a8 AW493845|C230026C11|NDCBE|kNBC-3 - 15|15 F1 solute carrier family 4 (anion exchanger), member 8 protein-coding 102640724 Gm36724 - - 3|3 predicted gene, 36724 protein-coding 69419 Mm.188688 NR_045487 ENSMUSG00000101854 1700026F02Rik - - 8|8 B3.3 RIKEN cDNA 1700026F02 gene ncRNA 102640424 XR_001784250 Gm36488 - - 4 A1|4 predicted gene, 36488 ncRNA 102465662 NR_106060 ENSMUSG00000106409 Mir7092 mmu-mir-7092 - X|X A7.3 microRNA 7092 ncRNA 71581 Mm.100110 NR_045050 ENSMUSG00000113985 9130015A21Rik 100043575|Gm4527 - 12|12 A3 RIKEN cDNA 9130015A21 gene ncRNA 100416824 Gm6172 620692 - 18|18 E3 SNW domain containing 1 pseudogene pseudo 100039397 Gm11803 - - 4|4 A1 predicted gene 11803 pseudo 675380 Gm16481 EG668989 - X|X A1.1 ATP-binding cassette, sub-family F (GCN20), member 2 pseudogene pseudo 100043721 Mm.239673 XR_383582 Gm4606 - - 14 D2|14 predicted gene 4606 protein-coding 61188 D19Mit69 - - 19 8.93 cM DNA segment, Chr 19, Massachusetts Institute of Technology 69 unknown 102639742 XR_375347 Gm35982 - - 2 H3|2 predicted gene, 35982 ncRNA 259067 Mm.451673 NM_147064 ENSMUSG00000049168 Olfr449 GA_x6K02T2P3E9-4722003-4721068|MOR103-1 - 6|6 B2.1 olfactory receptor 449 protein-coding 12309 Mm.6891 NM_009789 ENSMUSG00000040808 S100g AU042539|CABP1|CaBP-D9K|Cabp9k|Calb3 - X|X F4 S100 calcium binding protein G protein-coding 257948 NM_001011783 Olfr104-ps MOR250-5|Olfr104 - 17|17 B1 olfactory receptor 104, pseudogene pseudo 52156 D17Ggc1e - - - DNA segment, Chr 17, G. Consalez 1, expressed unknown 381213 XM_006527505 ENSMUSG00000101031 Ms4a12 Gm966 - 19|19 A membrane-spanning 4-domains, subfamily A, member 12 protein-coding 102639360 Gm35691 - - 9 F4|9 predicted gene, 35691 pseudo 100554 Mm.327439 NM_178894 ENSMUSG00000073497 AA792892 - - 5|5 E3 expressed sequence AA792892 protein-coding 100417683 Gm18763 - - 18|18 A1 round spermatid basic protein 1-like pseudogene pseudo 100039346 Gm2174 - - X A5|X predicted gene 2174 protein-coding 100040339 Mm.240751 NR_045085 ENSMUSG00000113314 Gm2721 - - 12 E|12 predicted gene 2721 ncRNA 74732 Mm.248648 NM_029075 ENSMUSG00000039232 Stx11 5830405C08Rik - 10|10 A2 syntaxin 11 protein-coding 100040602 Gm2862 - - 15 B1|15 predicted gene 2862 pseudo 100034915 Cia31 - - - collagen induced arthritis QTL 31 unknown 21933 Mm.193430 NM_020275 ENSMUSG00000022074 Tnfrsf10b DR5|KILLER|Ly98|MK|TRAILR2|TRICK2A|TRICK2B|TRICKB - 14|14 D2 tumor necrosis factor receptor superfamily, member 10b protein-coding 69137 Mm.41396 NM_026955 ENSMUSG00000031937 Vstm5 2200002K05Rik - 9|9 A2 V-set and transmembrane domain containing 5 protein-coding 26949 Mm.29210 NM_012037 ENSMUSG00000034993 Vat1 VAT-1 - 11|11 D vesicle amine transport 1 protein-coding 110013314 LOC110013314 - - - Bglap2 promoter region biological-region 105246601 LOC105246601 - - - leucine zipper protein 4 protein-coding 69270 Mm.271603 NM_027014 ENSMUSG00000027454 Gins1 2810418N01Rik|Gins4|PSF1|mKIAA0186 - 2|2 G3 GINS complex subunit 1 (Psf1 homolog) protein-coding 258413 Mm.335066 NM_146418 ENSMUSG00000060583 Olfr881 MOR162-7 - 9|9 A4 olfactory receptor 881 protein-coding 105244944 Mm.326577 XR_870182 Gm40466 Gm45695 - 8 A1.3|8 predicted gene, 40466 ncRNA 332110 Mm.40843 NM_177922 ENSMUSG00000063704 Mapk15 BC048082 - 15|15 D3 mitogen-activated protein kinase 15 protein-coding 99650 Mm.300083 NM_025762 ENSMUSG00000027942 4933434E20Rik 5730552F22Rik|AI462154|NICE-3|NS5ATP4 - 3|3 F1 RIKEN cDNA 4933434E20 gene protein-coding 100035023 Eclc ecl2 - 13 45.05 cM epistatic circling C C57L/J 2 unknown 73487 Mm.296811 NR_126536 ENSMUSG00000057805 1700084M14Rik - - X|X C2 Gm5941 pseudogene pseudo 68839 Mm.396537 NM_175134 ENSMUSG00000048307 Ankrd46 1110054N06Rik|AI314978|AI987733 - 15|15 B3.1 ankyrin repeat domain 46 protein-coding 100039017 Gm2007 - - 2 H4|2 predicted gene 2007 protein-coding 102636982 XR_868691 Gm33904 - - 5 G2|5 predicted gene, 33904 ncRNA 171249 Mm.378580 NM_134215 ENSMUSG00000060024 Vmn1r213 V1rh6 - 13|13 A3.1 vomeronasal 1 receptor 213 protein-coding 77065 Mm.338175 NM_178632 ENSMUSG00000037461 Ints7 5930412E23Rik|int7 - 1|1 H6 integrator complex subunit 7 protein-coding 66818 Mm.22565 NM_172396 ENSMUSG00000044600 Smim7 9130011J15Rik - 8|8 B3.3 small integral membrane protein 7 protein-coding 116622 Bits3 - - 11 15.38 cM bitterness sensitivity 3 unknown 105243241 Mm.441397 XR_879039 Gm39214 Gm45423 - 8 C3|8 predicted gene, 39214 ncRNA 665864 Gm7832 - - 5 E2|5 voltage-dependent anion channel 2 pseudogene pseudo 67027 Mm.101316 NM_023290 ENSMUSG00000000439 Mkrn2 2610002L04Rik|C81377 - 6|6 E3 makorin, ring finger protein, 2 protein-coding 108540 Ms13-27 Ms13-Hf11 - - minisatellite 13-27 detected by M13 phage probe other 100040214 Mm.423181 NM_001270487 ENSMUSG00000068074 Gm10228 - - 16|16 C3.3 predicted gene 10228 protein-coding 83434 Mm.84435 NM_031255 ENSMUSG00000040866 Rsph6a RSP4|Rshl1 - 7|7 A3 radial spoke head 6 homolog A (Chlamydomonas) protein-coding 102638990 XR_377956 Gm35417 - - 6 E2|6 predicted gene, 35417 ncRNA 170790 Mm.32780 NM_133241 ENSMUSG00000035805 Mlc1 AW048630|BB074274|Kiaa0027-hp|LVM|MLC|VL|WKL1|mKIAA0027 - 15|15 E3 megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human) protein-coding 105246595 XR_877925 Gm41865 - - 19 D2|19 predicted gene, 41865 ncRNA 105245562 Mm.359862 XR_873682 1700037F03Rik - - 13|13 C1 RIKEN cDNA 1700037F03 gene ncRNA 414113 Mm.193588 D230040A04Rik - - - RIKEN cDNA D230040A04 gene protein-coding 110550 Fdpsl6 - - - farnesyl diphosphate synthetase-like 6 protein-coding 102635757 Gm33014 - - 3|3 predicted gene, 33014 ncRNA 100504114 Mm.437070 NR_045794 ENSMUSG00000097242 Gm16907 - - 13 B3|13 32.8 cM predicted gene, 16907 ncRNA 69859 Mm.387807 2010008C14Rik - - 6|6 RIKEN cDNA 2010008C14 gene protein-coding 102632388 XR_379336 Gm38444 - - 9 A5.1|9 predicted gene, 38444 ncRNA 100124679 Trbv15 Gm16775|Tcrb-V12 - 6 19.23 cM|6 B1 T cell receptor beta, variable 15 other 100416285 Gm13477 - - 2|2 B centromere protein C1 pseudogene pseudo 328579 Mm.146839 NR_045281 ENSMUSG00000116331 B230214G05Rik B230214G05 - 15|15 E3 RIKEN cDNA B230214G05 gene ncRNA 114346 Adip7 - - - adiposity 7 unknown 27405 Mm.389663 NM_030239 ENSMUSG00000029299 Abcg3 Abcp2|Mxr2 - 5 E5|5 50.68 cM ATP binding cassette subfamily G member 3 protein-coding 102636559 XR_374032 Gm33592 - - 2 A3|2 predicted gene, 33592 ncRNA 13258 Del(10)13H Del13H - - deletion, Chr 10, Harwell 13 other 109286560 LOC109286560 - - - HLEA enhancer upstream of Tbx4 biological-region 70955 Mm.483193 NM_027621 ENSMUSG00000089887 4931403M11Rik - - 14|14 A3 RIKEN cDNA 4931403M11 gene unknown 75568 Mm.82143 NM_029341 ENSMUSG00000039676 Capsl 1700028N11Rik|AW125205 - 15|15 A1 calcyphosine-like protein-coding 105246349 XR_877096 Gm41649 - - 17 E4|17 predicted gene, 41649 ncRNA 627108 Gm6732 EG627108 - 6|6 B3 predicted gene 6732 pseudo 19434 Mm.431047 NM_013833 ENSMUSG00000024518 Rax 7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1 - 18 E1|18 39.03 cM retina and anterior neural fold homeobox protein-coding 73323 1700047G07Rik - - 8|8 RIKEN cDNA 1700047G07 gene protein-coding 102640259 XR_391130 Gm36371 Gm44890 - 7 A1|7 predicted gene, 36371 ncRNA 83379 Mm.45274 NM_031180 ENSMUSG00000029195 Klb AV071179|betaKlotho - 5|5 C3.1 klotho beta protein-coding 105245865 XR_874980 Gm41253 - - 14 E4|14 predicted gene, 41253 ncRNA 105244442 Gm40049 - - 3|3 predicted gene, 40049 protein-coding 628676 Gm10139 Mszf85 - 13 B3|13 predicted gene 10139 protein-coding 76725 2010003D24Rik - - 4|4 RIKEN cDNA 2010003D24 gene protein-coding 320051 Mm.277540 NM_176846 ENSMUSG00000034584 Exph5 AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b - 9|9 A5.3 exophilin 5 protein-coding 359895 DXMgc15 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 15 unknown 665037 Mm.401493 NR_045707 ENSMUSG00000072683 Gm7457 EG665037 - 6|6 G2 predicted gene 7457 ncRNA 629684 Gm6995 EG629684 - 18|18 E2 proteasome (prosome, macropain) subunit, beta type 3 pseudogene pseudo 78027 Mm.416937 XR_379838 ENSMUSG00000093619 4930535L15Rik - - 9|9 F1 RIKEN cDNA 4930535L15 gene ncRNA 52838 Mm.31239 NM_026828 ENSMUSG00000075467 Dnlz 1110034G11Rik|D2Bwg1335e|HEP1 - 2 A3|2 18.87 cM DNL-type zinc finger protein-coding 493135 Lxw1 - - 4 10.61 cM lupus BXSB x NZW 1 unknown 102632163 XR_001781949 Gm30310 - - 16 A1|16 predicted gene, 30310 ncRNA 637652 Vmn2r-ps81 EG637652|Gm7215 - 7|7 D3 vomeronasal 2, receptor, pseudogene 81 pseudo 102641034 XR_385958 LOC102641034 - - - uncharacterized LOC102641034 ncRNA 67062 Mm.276518 NM_001082412 ENSMUSG00000044348 Slc25a53 2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6 - X|X F1 solute carrier family 25, member 53 protein-coding 16687 Mm.302399 NM_008476 ENSMUSG00000058354 Krt6a 2310016L08Rik|CK-6A|K6A|K6[a]|Krt2-6a|Krt2-6c|MK6a|mK6[a] - 15 F2|15 56.97 cM keratin 6A protein-coding 75767 Mm.205335 NM_029423 ENSMUSG00000031488 Rab11fip1 2010200K21Rik|4833414G05Rik|Rcp - 8|8 A2 RAB11 family interacting protein 1 (class I) protein-coding 100861906 XM_006542588 ENSMUSG00000101286 Gm21317 - - Y D|Y predicted gene, 21317 protein-coding 52480 Mm.9002 NR_015456 ENSMUSG00000100826 Snhg14 AU018661|C230091D08Rik|D7Ertd715e|Gm42386|Gm42387|Gm42388|Gm42389|Gm42390|Gm42391|Gm45921|Lncat|Pwcr1|U-Ube3a-ATS|Ube3a-ATS|lincRNA-EC50 - 7 B5|7 34.04 cM small nucleolar RNA host gene 14 ncRNA 105244177 XR_879908 Gm39830 - - 11 B2|11 predicted gene, 39830 ncRNA 100418160 Gm19043 - - X|X C1 phosphoenolpyruvate carboxykinase 2 (mitochondrial) pseudogene pseudo 100042843 Gm13798 - - 2|2 E1 predicted gene 13798 pseudo 230661 Mm.482431 NM_146151 ENSMUSG00000033985 Tesk2 - - 4|4 D1 testis-specific kinase 2 protein-coding 101056256 LOC101056256 - - - proline-rich AKT1 substrate 1-like pseudo 102631626 XR_375744 Gm29921 - - 3 E3|3 predicted gene, 29921 ncRNA 212391 Mm.422910 NM_172154 ENSMUSG00000025019 Lcor 3110023F06Rik|A630025C20Rik|Mlr2|mKIAA1795 - 19|19 C3 ligand dependent nuclear receptor corepressor protein-coding 100302565 NR_028128 Snord68 MBII-202 - 8|8 E1 small nucleolar RNA, C/D box 68 snoRNA 100169864 Mm.3979 NM_001278271 ENSMUSG00000015290 Gm44504 Gm38419|Slc10a3-ubl4|SlcUbl4a|Tu11 - X A7.3|X predicted readthrough transcript (NMD candidate), 44504 protein-coding 102637166 XR_001783946 Gm34049 - - 3 F2.2|3 predicted gene, 34049 ncRNA 102636958 Gm28650 - - 1|1 predicted gene 28650 pseudo 108168205 XR_001781478 Gm46489 - - 14 E5|14 predicted gene, 46489 ncRNA 111656 Ms11 MMS11 - - minisatellites detected by probe MMS11 other 20299 Mm.12895 NM_009137 ENSMUSG00000031779 Ccl22 ABCD-1|DCBCK|MDC|Scya22 - 8|8 C5 chemokine (C-C motif) ligand 22 protein-coding 108167436 XR_001778168 LOC108167436 - - 7 C uncharacterized LOC108167436 ncRNA 28105 Mm.277382 NM_178872 ENSMUSG00000033949 Trim36 D18Wsu100e|haprin - 18 C|18 24.41 cM tripartite motif-containing 36 protein-coding 404360 Olfr246-ps1 GA_x6K02T2LVAD-4015-3152 - - olfactory receptor 246, pseudogene 1 pseudo 102642011 XR_881351 Gm38592 - - 4 C1|4 predicted gene, 38592 ncRNA 102636970 Gm33894 - - 18|18 predicted gene, 33894 ncRNA 114312 Ccrs1 - - 1 67.71 cM corpus callosum hemisphere surface size 1 unknown 74639 4930429N05Rik - - 16|16 RIKEN cDNA 4930429N05 gene protein-coding 68942 Mm.432944 NM_026879 ENSMUSG00000004843 Chmp2b 1190006E07Rik - 16|16 C1.3 charged multivesicular body protein 2B protein-coding 100039150 Mm.237772 NM_001200004 ENSMUSG00000096674 Mup15 Gm2068|Mup13 - 4 B3|4 major urinary protein 15 protein-coding 13043 Mm.205601 NM_007803 ENSMUSG00000031078 Cttn 1110020L01Rik|Ems1 - 7|7 F5 cortactin protein-coding 62173 D14Mit83 - - 14 30.1 cM DNA segment, Chr 14, Massachusetts Institute of Technology 83 unknown 100038756 Mm.276355 BC038268 - - 13|13 cDNA sequence BC038268 protein-coding 381058 Mm.390935 NM_199252 ENSMUSG00000067049 Unc93a Unc93l|unc-93A - 17 A1|17 8.78 cM unc-93 homolog A (C. elegans) protein-coding 24014 Mm.259254 NM_011882 ENSMUSG00000066800 Rnasel E230029I04Rik - 1|1 G3 ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent) protein-coding 108167646 XR_001779144 LOC108167646 - - 9 A5.2 uncharacterized LOC108167646 ncRNA 67797 Mm.250783 NM_026382 ENSMUSG00000021431 Snrnp48 1110050F08Rik|6530403A03Rik|C6orf151 - 13|13 A3.3 small nuclear ribonucleoprotein 48 (U11/U12) protein-coding 74954 Mm.425904 NM_029131 ENSMUSG00000072595 4930503E14Rik - - 14|14 C1 RIKEN cDNA 4930503E14 gene protein-coding 12567 Mm.6839 NM_009870 ENSMUSG00000006728 Cdk4 Crk3 - 10|10 D3 cyclin-dependent kinase 4 protein-coding 218343 Mm.277964 NM_001081352 ENSMUSG00000033991 Ttc37 - - 13|13 C1 tetratricopeptide repeat domain 37 protein-coding 21195 T(5;10)9Rl T9Rl - - reciprocal translocation, Chr 5 and 10, Russell 9 other 66753 Mm.294641 NM_025745 ENSMUSG00000020311 Erlec1 4933407N01Rik - 11|11 A4 endoplasmic reticulum lectin 1 protein-coding 74304 Mm.490579 NR_046049 ENSMUSG00000107895 1700094M24Rik - - 6|6 B3 RIKEN cDNA 1700094M24 gene ncRNA 102639060 XR_382026 Gm35464 - - 13 A1|13 predicted gene, 35464 ncRNA 67607 Mm.384626 NM_023363 ENSMUSG00000074165 Zfp788 2810426N06Rik|AI256342|AI605193 - 7 B3|7 zinc finger protein 788 protein-coding 116947 Naad5 - - - Neu associated allelic deletion 5 other 72297 Mm.290837 NM_028189 ENSMUSG00000031803 B3gnt3 2210008L19Rik - 8|8 B3.3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding 100035075 W10q14 - - - weight 10 weeks QTL 14 unknown 320981 Mm.211429 NM_177304 ENSMUSG00000038173 Enpp6 4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6 - 8 B1.1|8 26.48 cM ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 107845 Trex1a - - - Tcr1 region expressed 1, D17Leh66a region protein-coding 102639551 XR_386530 Gm35838 - - 19 A|19 predicted gene, 35838 ncRNA 102632086 Mm.404666 XR_373972 Gm13383 - - 2 A1|2 3.62 cM predicted gene 13383 ncRNA 102636458 XR_387229 Gm33517 - - 1 D|1 predicted gene, 33517 ncRNA 666201 Gm7976 EG666201 - 16|16 C4 ribosomal protein L7a pseudogene pseudo 102638681 XR_376045 Gm35186 - - 3 G1|3 predicted gene, 35186 ncRNA 21427 Mm.133919 NM_009336 ENSMUSG00000008958 Vps72 Tcfl1|YL-1 - 3|3 F2.1 vacuolar protein sorting 72 protein-coding 668885 Gm9416 EG668885 - 17|17 E5 predicted gene 9416 pseudo 28259 D10Jhu60 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 60 unknown 258322 Mm.377435 NM_146325 ENSMUSG00000073971 Olfr554 MOR25-1 - 7|7 E3 olfactory receptor 554 protein-coding 102466771 NR_105913 ENSMUSG00000106169 Mir6948 mmu-mir-6948 - 14|14 C2 microRNA 6948 ncRNA 26448 Mm.140948 NM_011973 ENSMUSG00000056458 Mok RAGE1|Rage|Stk30 - 12|12 F1 MOK protein kinase protein-coding 12577 Mm.168789 NM_009876 ENSMUSG00000037664 Cdkn1c AL024410|CDKI|Kip2|p57(kip2)|p57Kip2 - 7 F5|7 88.22 cM cyclin-dependent kinase inhibitor 1C (P57) protein-coding 207740 Mm.268895 NM_145359 ENSMUSG00000039568 Ubald1 1500031H01Rik|BC013706|Fam100a - 16|16 A1 UBA-like domain containing 1 protein-coding 20725 Mm.83909 NM_011459 ENSMUSG00000026315 Serpinb8 CAP-2|CAP2|NK10|Spi8|ovalbumin - 1|1 E2.1 serine (or cysteine) peptidase inhibitor, clade B, member 8 protein-coding 105243464 Gm39379 - - 9|9 predicted gene, 39379 ncRNA 404393 Olfr468-ps1 - - 7|7 E3 olfactory receptor 468, pseudogene 1 pseudo 62434 D18Mit197 - - 18 8.85 cM DNA Segment, Chr 18, Massachusetts Institute of Technology 197 unknown 108539 Ms13-28 Ms13-Hf12 - - minisatellite 13-28 detected by M13 phage probe other 102636523 XR_385474 Gm33565 - - 17 A3.3|17 predicted gene, 33565 ncRNA 665199 Gm13542 - - 2|2 A3 predicted gene 13542 pseudo 20520 Mm.42253 NM_011396 ENSMUSG00000018900 Slc22a5 Lstpl|Octn2|jvs - 11 B1.3|11 32.02 cM solute carrier family 22 (organic cation transporter), member 5 protein-coding 20945 Mm.439686 NM_013679 ENSMUSG00000017000 Svs6 MSVSP99|Svp6 - 2|2 H3 seminal vesicle secretory protein 6 protein-coding 62087 D10Mit87 - - 10 12.66 cM DNA segment, Chr 10, Massachusetts Institute of Technology 87 unknown 67736 Mm.30095 NM_026350 ENSMUSG00000004994 Ccdc130 4930527D15Rik|C77430 - 8|8 C2 coiled-coil domain containing 130 protein-coding 106345155 Gm45932 - - 5 E5|5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 pseudogene pseudo 100417811 Gm18843 - - 3|3 B DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo 98531 AU018797 - - - expressed sequence AU018797 unknown 62818 D13Mit262 - - 13 63.93 cM DNA segment, Chr 13, Massachusetts Institute of Technology 262 unknown 106306 AU014876 - - - expressed sequence AU014876 protein-coding 111626 Xmv57 Xmv-57 - - xenotropic murine leukemia virus 57 other 74287 Mm.29194 NM_019715 ENSMUSG00000055239 Kcmf1 1700094M07Rik|Debt91|Pmcf - 6 C1|6 32.3 cM potassium channel modulatory factor 1 protein-coding 633215 Gm7106 EG633215 - 14 C1|14 predicted gene 7106 pseudo 105245632 XR_873960 Gm41060 - - 13 D2.2|13 predicted gene, 41060 ncRNA 102640372 Gm36445 - - 13|13 predicted gene, 36445 ncRNA 100124342 Traj46 Gm16928 - 14|14 C2 T cell receptor alpha joining 46 other 105243294 XR_879215 Gm39256 - - 8 E1|8 predicted gene, 39256 ncRNA 102639810 Gm36035 - - 9 F3|9 predicted gene, 36035 pseudo 102633487 XR_386801 Gm31301 - - 19 D2|19 predicted gene, 31301 ncRNA 100416000 Gm17860 - - X|X A1.1 predicted gene, 17860 pseudo 18121 Mm.135266 NM_008711 ENSMUSG00000048616 Nog - - 11 C|11 54.34 cM noggin protein-coding 386753 Mm.341686 NM_198866 Dbpht2 Spot2 - 12|12 C3 DNA binding protein with his-thr domain protein-coding 105247111 XR_881182 Gm42269 - - 4 A5|4 predicted gene, 42269 ncRNA 102632655 XR_380235 ENSMUSG00000111778 Gm30676 - - 10 A4|10 predicted gene, 30676 ncRNA 319657 Mm.445318 A630049H14Rik - - 17|17 RIKEN cDNA A630049H14 gene protein-coding 102638015 XR_385208 Gm34684 - - 17 A1|17 predicted gene, 34684 ncRNA 110484 Tcra-V4.7 - - - T cell receptor alpha, variable 4.7 other 102634495 LOC102634495 - - 1 E1.1 LYR motif-containing protein 2 pseudogene pseudo 100417738 Gm18795 - - 12|12 E cation channel, sperm-associated, beta pseudogene pseudo 229595 Mm.490574 NM_144899 ENSMUSG00000015850 Adamtsl4 ADAMTSL-4|Tsrc1 - 3|3 F2.1 ADAMTS-like 4 protein-coding 108190 Rps24-ps1 mrpS24p - - ribosomal protein S24, pseudogene 1 pseudo 19847 NR_004413 ENSMUSG00000065773 Rnu1b6 U1b6 - 3 F2.1|3 41.86 cM U1b6 small nuclear RNA snRNA 19024 Mm.2817 NM_008905 ENSMUSG00000036528 Ppfibp2 Cclp1 - 7|7 E3 PTPRF interacting protein, binding protein 2 (liprin beta 2) protein-coding 110599584 Mm.263319 NM_177940 Eef1akmt4-ece2 Eef1akmt4 - 16 B1 Eef1akmt4-Ece2 readthrough protein-coding 102466151 NR_105755 ENSMUSG00000099184 Mir6337 Gm27877|mmu-mir-6337 - 2|2 C1.3 microRNA 6337 ncRNA 16189 Mm.276360 NM_021283 ENSMUSG00000000869 Il4 BSF-1|Il-4 - 11 B1.3|11 31.97 cM interleukin 4 protein-coding 108021853 LOC108021853 - - 4 C-D Ptch2 Hedgehog-responsive enhancers biological-region 240064 Mm.476307 NM_177359 ENSMUSG00000095253 Zfp799 6030490I01Rik - 17|17 B1 zinc finger protein 799 protein-coding 432488 Mm.32833 NR_038014 Gm17745 Gm3546 - 10|10 C2 predicted gene, 17745 ncRNA 78574 Mm.372553 D530033B14Rik - - 7|7 RIKEN cDNA D530033B14 gene protein-coding 105246868 XM_011249342 Gm12206 - - 11 B1.3|11 31.86 cM predicted gene 12206 protein-coding 625997 Gm6643 EG625997 - 18|18 A2 elongator acetyltransferase complex subunit 2 pseudogene pseudo 667046 Gm8435 EG667046 - 10|10 C1 ribosomal protein L7A pseudogene pseudo 103583 Mm.28017 NM_134015 ENSMUSG00000020271 Fbxw11 2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS - 11|11 A4 F-box and WD-40 domain protein 11 protein-coding 105242981 XR_882244 Gm39041 Gm44557 - 7 D2|7 predicted gene, 39041 ncRNA 319196 Mm.477841 NM_175667 ENSMUSG00000074771 Ankef1 AV276460|Ankrd5 - 2|2 F3 ankyrin repeat and EF-hand domain containing 1 protein-coding 109406 Bmd3 - - 13 0.0 cM bone mineral density 3 unknown 20912 Mm.316894 NM_011504 ENSMUSG00000027882 Stxbp3 Munc-18c|Stxbp3a|Sxtbp3|Unc18-3 - 3|3 F3 syntaxin binding protein 3 protein-coding 100038572 Mm.459573 Gm12000 - - 11|11 predicted gene 12000 protein-coding 105243802 Gm39570 - - 11|11 predicted gene, 39570 ncRNA 667879 Gm12587 - - 11|11 E2 predicted gene 12587 pseudo 51863 D2Bir28e - - - DNA segment, Chr 2, Birkenmeier 28, expressed unknown 76610 Mm.380984 1700063K16Rik - - 16|16 C3.1 RIKEN cDNA 1700063K16 gene unknown 67513 Mm.10374 NM_001190445 ENSMUSG00000073684 Faap20 2610002J02Rik - 4|4 E2 Fanconi anemia core complex associated protein 20 protein-coding 61294 D2Mit286 - - 2 76.74 cM DNA segment, Chr 2, Massachusetts Institute of Technology 286 unknown 102638423 XR_377210 Gm34994 - - 5 G3|5 predicted gene, 34994 ncRNA 100502661 Mm.446956 Gm15527 - - 6|6 26.84 cM predicted gene 15527 ncRNA 320933 Mm.440953 NR_155355 D230017M19Rik B930094L07Rik - 1|1 C3 RIKEN cDNA D230017M19 gene ncRNA 629908 Ighv1-43 EG629908|Gm7016 - 12 F2|12 immunoglobulin heavy variable V1-43 other 258625 Mm.377599 NM_146632 ENSMUSG00000061336 Olfr116 MOR218-2 - 17|17 B1 olfactory receptor 116 protein-coding 102631679 XR_377983 2810048H02Rik - - 6|6 F1 RIKEN cDNA 2810048H02 gene ncRNA 102636893 Gm33842 - - 18|18 predicted gene, 33842 ncRNA 269630 Mm.425231 NR_040469 ENSMUSG00000073147 5031425E22Rik - - 5|5 A3 RIKEN cDNA 5031425E22 gene ncRNA 72332 2610001N11Rik - - 12|12 RIKEN cDNA 2610001N11 gene protein-coding 62530 D11Mit155a D11Mit1004|D11Mit155 - 11 36.32 cM DNA segment, Chr 11, Massachusetts Institute of Technology 155a unknown 51857 D2Sut1e - - - DNA segment, Chr 2, Sutcliffe 1, expressed unknown 57882 AA517653 - - - EST AA517653 unknown 100036051 Oss2 - - - osteosarcoma suppressor 2 unknown 105500046 NR_131335 ENSMUSG00000107859 Gm30731 Pnky|lnc-pou3f2 - 4 A3|4 predicted gene, 30731 ncRNA 102635823 XR_391540 Gm33068 - - 7 C|7 predicted gene, 33068 ncRNA 239410 Mm.352401 NR_033609 ENSMUSG00000060530 A930017M01Rik Gm305 - 15|15 B3.2 Smg-5 homolog, nonsense mediated mRNA decay factor pseudogene pseudo 108518 Ms13-32 Ms13-Hf16 - - minisatellite 13-32 detected by M13 phage probe other 75636 Mm.490522 NR_040568 ENSMUSG00000099983 1700022E09Rik - - 16|16 C1.3 RIKEN cDNA 1700022E09 gene ncRNA 100463508 Gm19258 - - 2 F1|2 63.26 cM chaperonin containing Tcp1, subunit 3 (gamma) pseudogene pseudo 100418019 Gm18951 - - 19|19 B eukaryotic translation initiation factor 4A1 pseudogene pseudo 62453 D13Mit306 - - - DNA Segment, Chr 13 Massachusetts Institute of Technology 306 unknown 73713 Mm.313695 NM_001170847 ENSMUSG00000043639 Rbm20 1110018J23Rik|2010003H22Rik|AI646761 - 19|19 D2 RNA binding motif protein 20 protein-coding 258275 Mm.377408 NM_146278 ENSMUSG00000049011 Olfr729 MOR246-6 - 14|14 C1 olfactory receptor 729 protein-coding 27813 133J02R - - - DNA segment, 133J02R (Research Genetics) unknown 71183 Mm.79402 NM_027709 ENSMUSG00000030158 Clec12b 4933425B16Rik - 6|6 F3 C-type lectin domain family 12, member B protein-coding 258740 Mm.223173 NM_146745 ENSMUSG00000095322 Olfr957 MOR171-12 - 9|9 A5.1 olfactory receptor 957 protein-coding 387354 Mm.377915 NM_207029 ENSMUSG00000063762 Tas2r129 T2R29|Tas2r29|mGR29|mt2r60 - 6 G1|6 64.03 cM taste receptor, type 2, member 129 protein-coding 403395 Mm.81117 NM_001007223 ENSMUSG00000008874 Clec3a 1110019O10Rik|Clecsf1|Gm796 - 8|8 E1 C-type lectin domain family 3, member a protein-coding 100126197 Tsti3 - - - tail suspension test immobility 3 unknown 105244134 XR_866175 Gm39801 - - 2 B|2 predicted gene, 39801 ncRNA 402758 A330074H02Rik - - 7|7 RIKEN cDNA A330074H02 gene protein-coding 666897 Gm11830 - - 4|4 A1 predicted gene 11830 pseudo 404375 Olfr296-ps1 GA_x5J8B7TS19L-6-604|GA_x5J8B7U22CP-453-1035|MOR220-5_p - 7|7 D3 olfactory receptor 296, pseudogene 1 pseudo 100041422 Gm3327 - - 14 C1|14 predicted gene 3327 protein-coding 105418 Mm.2077 NM_001033214 ENSMUSG00000038925 E330034G19Rik AA415275|Zpac - 14|14 A3 RIKEN cDNA E330034G19 gene protein-coding 75026 4930466F19Rik - - 4|4 RIKEN cDNA 4930466F19 gene protein-coding 100043255 Mm.398921 XR_373493 Gm4319 - - 1 C3|1 predicted gene 4319 unknown 100328601 Gm13355 - - 2|2 A3 aminoadipate-semialdehyde dehydrogenase pseudogene pseudo 667872 Gm8853 EG667872 - 6|6 C1 ornithine decarboxylase, structural 1 pseudogene pseudo 13003 Mm.158700 NM_019389 ENSMUSG00000021614 Vcan 5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf - 13 C3|13 45.5 cM versican protein-coding 100042643 Gm3946 - - 17 A3.3|17 eukaryotic translation initiation factor 4A1 pseudogene pseudo 100036109 Pgis2 - - 2 17.24 cM proteoglycan induced spondylitis 2 unknown 100504592 Mm.160107 1700104B16Rik - - 8|8 A3 RIKEN cDNA 1700104B16 gene unknown 100042777 Gm10131 - - 8|8 A4 enhancer of rudimentary homolog pseudogene pseudo 108254 Gapdh-ps6 Gapd-ps6|domes6 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 6 pseudo 76464 Mm.202518 NM_029617 ENSMUSG00000027326 Knl1 2310043D08Rik|5730505K17Rik|Casc5 - 2|2 E5 kinetochore scaffold 1 protein-coding 217125 Mm.297199 NM_146025 ENSMUSG00000047181 Samd14 AI839049|AI854782|BC034054 - 11|11 D sterile alpha motif domain containing 14 protein-coding 108167488 LOC108167488 - - 7 F1 putative high mobility group protein B1-like 1 pseudo 105243447 XR_870891 Gm39369 - - 9 D|9 predicted gene, 39369 ncRNA 19374 Mm.4988 NM_009020 ENSMUSG00000032864 Rag2 Rag-2 - 2 E2|2 53.87 cM recombination activating gene 2 protein-coding 102637641 XR_374730 Gm34401 - - 2 C3|2 predicted gene, 34401 ncRNA 102632261 Gm21803 - - Y|Y predicted gene, 21803 protein-coding 387244 NR_029725 ENSMUSG00000065421 Mirlet7a-1 Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1 - 13|13 A5 microRNA let7a-1 ncRNA 258843 Mm.377716 NM_146846 ENSMUSG00000075174 Olfr1087 MOR188-5 - 2|2 D olfactory receptor 1087 protein-coding 74182 Mm.211211 NM_027096 ENSMUSG00000027346 Gpcpd1 2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434 - 2 F2|2 glycerophosphocholine phosphodiesterase 1 protein-coding 433864 Mm.262815 NM_001033457 ENSMUSG00000001569 Nom1 D5Kng1|Gm1040 - 5 B1|5 15.0 cM nucleolar protein with MIF4G domain 1 protein-coding 258785 Mm.377689 NM_146789 ENSMUSG00000075094 Olfr1230 MOR237-1 - 2|2 E1 olfactory receptor 1230 protein-coding 100043707 Gm4599 - - 17|17 E3 SET translocation pseudogene pseudo 102635150 Mm.459428 XR_378153 Gm38475 - - 6 G3|6 predicted gene, 38475 ncRNA 108167961 XM_017315291 Gm46319 - - 12 D1|12 predicted gene, 46319 protein-coding 102636905 Mm.245742 XR_874789 Gm26908 - - 14 D2|14 predicted gene, 26908 ncRNA 100038683 Mm.387090 Gm10775 - - 13 B3|13 predicted gene 10775 unknown 215243 Mm.261259 NM_153137 ENSMUSG00000037318 Traf3ip3 6030423D04Rik|AI115021|T3jam - 1|1 H6 TRAF3 interacting protein 3 protein-coding 61633 D8Mit242 - - 8 50.07 cM DNA segment, Chr 8, Massachusetts Institute of Technology 242 unknown 723846 NR_029770 ENSMUSG00000070101 Mir341 Mirn341|mmu-mir-341 - 12 F1|12 microRNA 341 ncRNA 217558 Mm.253264 NM_001015099 ENSMUSG00000035293 G2e3 6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333 - 12|12 B3 G2/M-phase specific E3 ubiquitin ligase protein-coding 107586 Mm.252750 NM_026924 ENSMUSG00000037279 Ovol2 1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2 - 2|2 G1 ovo like zinc finger 2 protein-coding 208777 Mm.271897 NM_172463 ENSMUSG00000047793 Sned1 6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep - 1|1 D sushi, nidogen and EGF-like domains 1 protein-coding 18005 Mm.33773 NM_010892 ENSMUSG00000026622 Nek2 AA617254|C77054 - 1 H6|1 96.94 cM NIMA (never in mitosis gene a)-related expressed kinase 2 protein-coding 108168562 XM_017318764 LOC108168562 - - Y D Y-linked testis-specific protein 1-like protein-coding 194352 Mm.135734 NM_001007572 ENSMUSG00000036899 Trpv5 CAT2|D630033B11|ECAC1 - 6|6 B2.1 transient receptor potential cation channel, subfamily V, member 5 protein-coding 100415990 Gm17858 - - X|X A3.2 predicted gene, 17858 pseudo 257695 GA_x5J8B7TTEHJ-1-399 - - - olfactory receptor GA_x5J8B7TTEHJ-1-399 protein-coding 100041826 Gm10182 - - 9|9 A3 high mobility group nucleosomal binding domain 2 pseudogene pseudo 101744 Mm.26022 NM_175319 ENSMUSG00000037469 Acp7 AU017076|C330005M16Rik|Papl - 7|7 B1 acid phosphatase 7, tartrate resistant protein-coding 100416840 Gm11853 - - 4|4 A3 kinesin family member 2C pseudogene pseudo 100862442 LOC100862442 - - - zinc finger protein 239-like pseudo 327946 Mm.383301 NR_040280 ENSMUSG00000085162 Gm12295 A730013G04 - 11|11 B3 predicted gene 12295 ncRNA 666803 Mm.389443 NM_001243003 ENSMUSG00000095522 Gm8298 EG666803 - 3|3 D predicted gene 8298 protein-coding 100418323 Gm19141 - - 15|15 E1 predicted gene, 19141 pseudo 100702 Mm.491210 NM_194336 ENSMUSG00000104713 Gbp6 AI595338|Mpa2l - 5|5 E5 guanylate binding protein 6 protein-coding 75316 Mm.354115 NM_026541 ENSMUSG00000031939 Taf1d 2810003M17Rik|4930553M18Rik|5930426I11Rik|Josd3|TAF(I)41|TAFI41 - 9|9 A2 TATA-box binding protein associated factor, RNA polymerase I, D protein-coding 102640411 XR_874112 Gm36476 - - 14 A1|14 predicted gene, 36476 ncRNA 102467531 n-TGgcc5 n-Tg13 - 11 B3|11 nuclear encoded tRNA glycine 5 (anticodon GCC) tRNA 100043550 Gm4513 - - 7 A3|7 predicted gene 4513 pseudo 13470 Dp(7)1H Dp1H - - duplication, Chr 7, Harwell 1 other 234854 Mm.190984 NM_194444 ENSMUSG00000033862 Cdk10 BC017131 - 8|8 E1 cyclin-dependent kinase 10 protein-coding 100418410 Gm2987 100040828 - 1|1 B solute carrier family 16 (monocarboxylic acid transporters), member 1 pseudogene pseudo 102637604 XR_385137 Gm34371 - - 17 A1|17 predicted gene, 34371 ncRNA 74159 Mm.181973 NM_028793 ENSMUSG00000026781 Acbd5 1300014E15Rik - 2|2 A3 acyl-Coenzyme A binding domain containing 5 protein-coding 102636673 Mm.449180 NR_153821 Gm13029 Gm33676 - 4 71.35 cM|4 D3 predicted gene 13029 ncRNA 14985 Mm.347438 NM_013544 ENSMUSG00000024448 H2-M10.1 9.5H - 17 B1|17 19.01 cM histocompatibility 2, M region locus 10.1 protein-coding 102466256 NR_106180 ENSMUSG00000098919 Mir8102 Gm27795|mmu-mir-8102 - 11|11 D microRNA 8102 ncRNA 71409 Mm.394427 NM_172409 ENSMUSG00000036053 Fmnl2 5430425K04Rik|Man - 2|2 C1.1 formin-like 2 protein-coding 61747 D4Mit258 - - 4 55.52 cM DNA segment, Chr 4, Massachusetts Institute of Technology 258 unknown 100217437 NR_028537 Snord99 MBII-420 - 4 D2.3|4 small nucleolar RNA, C/D box 99 snoRNA 100416880 Gm20947 - - 12|12 C1 SCAN domain containing 3 pseudogene pseudo 76811 Mm.398397 2410152P15Rik - - 19|19 RIKEN cDNA 2410152P15 gene protein-coding 71218 4933428L01Rik - - 15|15 RIKEN cDNA 4933428L01 gene protein-coding 574416 Gm11597 Ka11p - 11|11 D type I keratin KA11P pseudo 61836 D2Mit304 - - 2 62.49 cM DNA segment, Chr 2, Massachusetts Institute of Technology 304 unknown 102635812 XR_380265 Gm33058 - - 10 B2|10 predicted gene, 33058 ncRNA 71702 Mm.28270 NM_152810 ENSMUSG00000023932 Cdc5l 1200002I02Rik|AA408004|PCDC5RP - 17|17 B3 cell division cycle 5-like (S. pombe) protein-coding 102639041 Gm35452 - - 11|11 predicted gene, 35452 ncRNA 11468 Mm.292865 NM_009610 ENSMUSG00000059430 Actg2 ACTA3|Act-4|Act4|SMGA - 6 C3|6 35.94 cM actin, gamma 2, smooth muscle, enteric protein-coding 52897 Mm.341103 NM_001024931 ENSMUSG00000025576 Rbfox3 Fox-3|Hrnbp3|NeuN|Neuna60 - 11 E2|11 83.22 cM RNA binding protein, fox-1 homolog (C. elegans) 3 protein-coding 100043061 Mm.484992 NM_001167162 ENSMUSG00000095984 Gm4201 Vmn1r154 - 7 A3|7 predicted gene 4201 protein-coding 102636709 XR_881866 ENSMUSG00000086533 Mypopos Gm16266 - 7 A3|7 9.45 cM Myb-related transcription factor, partner of profilin, opposite strand ncRNA 105452 AB039980 - - - expressed sequence AB039980 protein-coding 110611 Mm.30012 NM_133808 ENSMUSG00000034088 Hdlbp 1110005P14Rik|AA960365|AI118566|D1Ertd101e - 1 D|1 47.24 cM high density lipoprotein (HDL) binding protein protein-coding 13866 Mm.290822 NM_001003817 ENSMUSG00000062312 Erbb2 Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023 - 11 61.75 cM|11 D erb-b2 receptor tyrosine kinase 2 protein-coding 100034863 Capsq1 - - - capsaicin sensitivity related QTL 1 unknown 105242506 XR_866515 Gm38718 - - 2 E1|2 predicted gene, 38718 ncRNA 76863 Mm.27293 NM_029775 ENSMUSG00000032002 Dcun1d5 3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik - 9|9 A1 DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) protein-coding 667442 Gm15321 EG667442 - 17|17 B1 predicted gene 15321 pseudo 74120 Mm.29081 NM_148924 ENSMUSG00000022529 Zfp263 1200014J04Rik|AI326880|AU020888|NT2|mFPM315 - 16 A1|16 2.2 cM zinc finger protein 263 protein-coding 111936 Iap5rb11 - - - intracisternal A-type particle, U5 region, SINE repeat b-11 other 108169180 Gm44163 - - 6 C2|6 predicted gene, 44163 pseudo 109279872 LOC109279872 Mm75 - - VISTA enhancer mm75 biological-region 258316 Mm.223012 NM_146319 ENSMUSG00000059488 Olfr727 MOR246-2 - 14|14 C1 olfactory receptor 727 protein-coding 78308 Mm.28468 NM_030084 ENSMUSG00000005823 Gpr108 1810015L19Rik|AA589464|C79132|Lustr2 - 17|17 D G protein-coupled receptor 108 protein-coding 735266 NR_030420 ENSMUSG00000076067 Mir592 Mirn592|mir-592|mmu-mir-592 - 6 A3.2|6 microRNA 592 ncRNA 116513 Pvcan1 - - 8 2.14 cM protection against vaginal candidiasis 1 unknown 80744 Mm.288151 NM_030560 ENSMUSG00000027014 Cwc22 AA684037|AI173004|AL022752|B230213M24|mKIAA1604 - 2|2 C3 CWC22 spliceosome-associated protein protein-coding 27610 D0Hgu1 - - - DNA segment, Human Genetics Unit 1 unknown 69979 2810427C15Rik - - 2|2 RIKEN cDNA 2810427C15 gene protein-coding 407795 Mm.387876 NM_001352886 ENSMUSG00000074300 BC030870 SMIM31 - 8 B3.1|8 cDNA sequence BC030870 protein-coding 108167817 XR_001779792 Gm46230 - - 10 B5.1|10 predicted gene, 46230 ncRNA 231589 Mm.469883 NM_001104624 ENSMUSG00000091635 Vmn2r13 EG231589|Gm4867 - 5|5 F vomeronasal 2, receptor 13 protein-coding 76924 1700021A07Rik - - 10|10 A3 RIKEN cDNA 1700021A07 gene unknown 105242941 Gm39013 - - 7|7 predicted gene, 39013 ncRNA 319871 Mm.383743 NR_040276 ENSMUSG00000085421 4732490B19Rik - - 11|11 E2 RIKEN cDNA 4732490B19 gene ncRNA 108168085 XR_001780952 Gm46416 - - 13 B1|13 predicted gene, 46416 ncRNA 627264 Mm.457960 NM_001085543 ENSMUSG00000094307 Btbd35f28 Gm14347 - X|X A1.1 BTB domain containing 35, family member 28 protein-coding 102638644 XR_382157 Gm35158 - - 13 A3.2|13 predicted gene, 35158 ncRNA 54613 Mm.212742 NM_018784 ENSMUSG00000022747 St3gal6 1700023B24Rik|AI930218|AW552396|Siat10|St3galVI - 16|16 C1.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 751866 Mm.381916 NR_003188 Kis2 Kis2-T1|Kis2-T2|Kis2-T3|Kis2-T4|Kis2-T5|Platr24|Xpcl1 - X|X A5 Kaplan integration site 2 ncRNA 102631922 XR_387921 Gm30132 - - 8 C5|8 predicted gene, 30132 ncRNA 105246236 Gm41548 - - 17|17 predicted gene, 41548 ncRNA 105244962 Gm40480 - - 8|8 predicted gene, 40480 ncRNA 108167355 XR_001779735 LOC108167355 - - 10 A3 uncharacterized LOC108167355 ncRNA 102637715 XR_385485 Gm34455 - - 17 A3.3|17 predicted gene, 34455 ncRNA 111354 Mmv20 Mmv-20 - - MCF endogenous virus 20 other 102636613 XR_392138 ENSMUSG00000100227 Gm28291 - - Y C1|Y predicted gene 28291 ncRNA 100125298 Vmn2r-ps20 - - 4|4 E1 vomeronasal 2, receptor, pseudogene 20 pseudo 27562 D5Buc19 37L14.T7 - 5 37.68 cM DNA segment, Chr 5, Bucan 19 unknown 108167914 XR_001780268 Gm46288 - - 11 B5|11 predicted gene, 46288 ncRNA 102640503 XR_387102 Gm36547 - - X F5|X predicted gene, 36547 ncRNA 100040360 Gm2734 - - 8|8 A1.1 ribosomal protein L7-like 1 pseudogene pseudo 140484 Mm.293761 NM_080463 ENSMUSG00000046020 Pofut1 O-FucT-1|mKIAA0180 - 2|2 H1 protein O-fucosyltransferase 1 protein-coding 100035635 Bw20 - - - body weight QTL 20 unknown 111536 Pmv11 Pmv-11 - - polytropic murine leukemia virus 11 other 102638323 Gm34914 - - 16|16 predicted gene, 34914 protein-coding 102637793 XR_380644 Gm34515 - - 10 C1|10 predicted gene, 34515 ncRNA 100417312 Gm18523 - - 14|14 B crumbs homolog 1 pseudogene pseudo 97756 C87259 - - - expressed sequence C87259 unknown 102634336 Gm12650 - - 4 C5|4 43.27 cM predicted gene 12650 pseudo 100036253 Apsic1 - - - apomorphine stress induced climbing 1 unknown 403200 Mm.60809 NM_207527 ENSMUSG00000052642 4930504O13Rik Gm524|Lypd9 - 11|11 B1.3 RIKEN cDNA 4930504O13 gene protein-coding 116735 Cocrb2 - - - cocaine related behavior 2 unknown 105245036 Gm40547 - - 9|9 predicted gene, 40547 ncRNA 383050 Gm5216 EG383050 - 15|15 D3 pyruvate kinase, muscle pseudogene pseudo 105243472 XR_870965 Gm39386 - - 9 E2|9 predicted gene, 39386 ncRNA 11991 Mm.150231 NM_007516 ENSMUSG00000000568 Hnrnpd Auf1|Hnrpd - 5|5 E4 heterogeneous nuclear ribonucleoprotein D protein-coding 387174 NR_029733 ENSMUSG00000093007 Mir15a Mirn15a|mir-15a|mmu-mir-15a - 14|14 D1 microRNA 15a ncRNA 108568 Iapls2-29 - - - intracisternal A particle, lymphocyte specific 2-29 other 259277 Mm.458023 NM_008940 ENSMUSG00000064023 Klk8 BSP1|NP|Nrpn|Prss19 - 7 B3|7 28.26 cM kallikrein related-peptidase 8 protein-coding 100040262 XM_011251050 Gm20833 - - Y|Y A1 predicted gene, 20833 protein-coding 60718 D9Mit43 - - 9 2.46 cM DNA segment, Chr 9, Massachusetts Institute of Technology 43 unknown 102637775 XR_388700 Gm38501 - - 11 B2|11 predicted gene, 38501 ncRNA 102635964 Gm28699 - - Y|Y predicted gene 28699 pseudo 320972 D130020G16Rik - - 16|16 RIKEN cDNA D130020G16 gene protein-coding 67926 Mm.23361 NM_026457 ENSMUSG00000034913 Spert 1700086N05Rik|AI596460|Nurit - 14|14 D3 spermatid associated protein-coding 107963952 LOC107963952 - - - Ghr downstream L1 promoter region biological-region 100417374 Gm18573 - - 14|14 A1 ubiquitin specific peptidase 7 pseudogene pseudo 244219 Mm.207872 NM_146259 ENSMUSG00000049728 Zfp668 BC030314|E130018B19Rik|Znf668 - 7|7 F3 zinc finger protein 668 protein-coding 628753 Gm12176 - - 11|11 B1.1 predicted gene 12176 pseudo 76929 1700021N20Rik - - 19|19 RIKEN cDNA 1700021N20 gene protein-coding 105243417 XR_870791 Gm39345 - - 9 B|9 predicted gene, 39345 ncRNA 109279921 LOC109279921 Mm174 - - VISTA enhancer mm174 biological-region 93697 Mm.35911 NM_145618 ENSMUSG00000032235 Ice2 B230343B06Rik|Narg2 - 9|9 C interactor of little elongation complex ELL subunit 2 protein-coding 338354 Mm.389873 NM_001081021 ENSMUSG00000063047 Zfp780b B230208L21Rik - 7|7 A3 zinc finger protein 780B protein-coding 214704 Mm.61131 NM_172535 ENSMUSG00000046192 Iqub 4932408B21Rik|Trs4 - 6|6 A3.1 IQ motif and ubiquitin domain containing protein-coding 101055754 XR_874072 LOC101055754 - - 14 A1 uncharacterized LOC101055754 protein-coding 381062 Mm.393767 NM_183133 ENSMUSG00000036552 Ermard 2210404J11Rik|2410011O22Rik|AI448938 - 17|17 A2 ER membrane associated RNA degradation protein-coding 100040340 Mm.485752 NM_001099320 Gm11273 - - 13|13 A3.1 cytochrome c oxidase, subunit Vb pseudogene pseudo 102634805 LOC102634805 - - 1 E2.1 60S ribosomal protein L37a-like pseudo 107602 Ts4 Ts-4 - - Trichinella spiralis resistance 4 unknown 74374 Mm.159176 NM_177562 ENSMUSG00000068663 Clec16a 4932416N17Rik|curt|mKIAA0350 - 16|16 A1 C-type lectin domain family 16, member A protein-coding 108168806 XR_001783518 Gm45609 - - 2 H1|2 predicted gene 45609 ncRNA 102635584 XR_382265 Gm32878 - - 13 A4|13 predicted gene, 32878 ncRNA 111732 Igk-V11 - - - immunoglobulin kappa chain variable 11 (V11) other 14370 Mm.184289 NM_008058 ENSMUSG00000036904 Fzd8 Fz8 - 18 A1|18 4.91 cM frizzled class receptor 8 protein-coding 100093662 Trnaa-agc - - - transfer RNA alanine (anticodon AGC) tRNA 237252 Gm4921 - - 10 A1|10 tripartite motif-containing 59 pseudogene pseudo 108168394 XR_001782517 Gm46635 - - 18 D3|18 predicted gene, 46635 ncRNA 13877 Mm.246551 NM_007951 ENSMUSG00000021131 Erh Mer|Prei1 - 12|12 C3 ERH mRNA splicing and mitosis factor protein-coding 100049789 Mm.441060 Gm12264 - - - predicted gene 12264 protein-coding 69655 Mm.285685 NM_027152 ENSMUSG00000028865 Cd164l2 2310047N01Rik - 4|4 D2.3 CD164 sialomucin-like 2 protein-coding 73673 Mm.205196 NM_028598 ENSMUSG00000074269 Rec114 2410076I21Rik|4930527A11Rik - 9 B|9 REC114 meiotic recombination protein protein-coding 100034784 Hrtfm2 Hfm2 - 3 72.28 cM heart failure modifier 2 unknown 20340 Mm.276271 NM_009149 ENSMUSG00000003316 Glg1 AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel - 8 E1|8 57.98 cM golgi apparatus protein 1 protein-coding 105244347 Gm39975 - - 2|2 predicted gene, 39975 ncRNA 102636238 XR_380548 Gm33361 - - 10 B5.3|10 predicted gene, 33361 ncRNA 228980 Mm.235542 NM_001081092 ENSMUSG00000039117 Taf4 135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a - 2|2 H4 TATA-box binding protein associated factor 4 protein-coding 492878 Berr1 - - - berghei resistance locus 1 unknown 640755 Gm7309 - - 6|6 F3 PQ loop repeat containing pseudogene pseudo 13728 Mm.258986 NM_007928 ENSMUSG00000024969 Mark2 EMK-1|Emk|Par-1|Par-1b - 19 A|19 5.32 cM MAP/microtubule affinity regulating kinase 2 protein-coding 257903 Olfr977-ps1 MOR224-11 - 9|9 A5.1 olfactory receptor 977, pseudogene 1 pseudo 100416065 Gm17899 - - 16|16 B2 nucleoporin 37 pseudogene pseudo 208968 Mm.293819 NM_153532 ENSMUSG00000036916 Zfp280c BC028839|Suhw3|Zfp633|Znf280c|mKIAA1584 - X|X A5 zinc finger protein 280C protein-coding 170800 Cdcs1 - - 3 56.07 cM cytokine deficiency colitis susceptibility 1 unknown 230828 Mm.261647 NM_178257 ENSMUSG00000037157 Il22ra1 9130219A07Rik|IL-22R|Il22r - 4 D3|4 67.99 cM interleukin 22 receptor, alpha 1 protein-coding 74363 Mm.399403 NR_046053 4931430N09Rik - - 6|6 F1 RIKEN cDNA 4931430N09 gene ncRNA 102633781 XR_865543 Gm29183 - - 1 C3|1 predicted gene 29183 ncRNA 258520 Mm.377549 NM_146527 ENSMUSG00000052182 Olfr849 MOR151-1 - 9|9 A2 olfactory receptor 849 protein-coding 69241 Mm.279898 NM_027002 ENSMUSG00000024258 Polr2d 2310002G05Rik|2610028L19Rik|HSRBP4|RBP4 - 18|18 B1 polymerase (RNA) II (DNA directed) polypeptide D protein-coding 108167954 Gm46312 - - 12 A1.2|12 ubiquitin-conjugating enzyme E2 D3 pseudogene pseudo 12835 Mm.7562 NM_009935 ENSMUSG00000048126 Col6a3 AI507288|Col6a-3 - 1 D|1 45.53 cM collagen, type VI, alpha 3 protein-coding 66776 Mm.247625 NR_003518 Pisd-ps3 4933439C20Rik - - phosphatidylserine decarboxylase, pseudogene 3 pseudo 62268 D19Mit17 - - 19 38.75 cM DNA segment, Chr 19, Massachusetts Institute of Technology 17 unknown 108168215 Gm46498 - - 15 A2|15 DNA-directed RNA polymerase II subunit RPB4 pseudogene pseudo 102640479 Mm.126187 XR_382637 ENSMUSG00000113771 Gm36529 - - 13 C1|13 predicted gene, 36529 ncRNA 434203 Mm.389909 NM_001004184 ENSMUSG00000025726 Slc28a1 Cnt1 - 7|7 D3 solute carrier family 28 (sodium-coupled nucleoside transporter), member 1 protein-coding 100418338 Gm19148 - - 3|3 G3 TIP41, TOR signalling pathway regulator-like pseudogene pseudo 53869 Mm.1387 NM_017382 ENSMUSG00000004771 Rab11a - - 9|9 C RAB11A, member RAS oncogene family protein-coding 257918 Olfr817-ps1 MOR110-9 - 10|10 D3 olfactory receptor 817, pseudogene 1 pseudo 102639056 XR_386739 Gm35460 - - 19 C3|19 predicted gene, 35460 ncRNA 100034884 Pbwg5 - - 10 72.35 cM postnatal body weight growth 5 unknown 53140 63N19-T7 - - - DNA segment, 63N19-T7 unknown 16480 Mm.299774 NM_010593 ENSMUSG00000001552 Jup Ctnng|D930025P04Rik|PG - 11 D|11 63.47 cM junction plakoglobin protein-coding 16675 Mm.440476 NM_010666 ENSMUSG00000017588 Krt27 CK-27|Krt1-c29|mIRSa3.1|stpm - 11 D|11 62.92 cM keratin 27 protein-coding 102641779 Mm.447061 Gm15239 - - X|X 78.33 cM predicted gene 15239 ncRNA 244091 Mm.38773 NM_172904 ENSMUSG00000038663 Fsd2 9830160G03Rik|Spryd1 - 7|7 D3 fibronectin type III and SPRY domain containing 2 protein-coding 18053 Mm.283893 NM_033217 ENSMUSG00000000120 Ngfr LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR - 11 D|11 59.01 cM nerve growth factor receptor (TNFR superfamily, member 16) protein-coding 404494 Olfr1266-ps1 GA_x5J8B7W62NC-1313389-1313225 - 2|2 E1 olfactory receptor 1266, pseudogene 1 pseudo 62752 D17Mit199 - - 17 15.76 cM DNA segment, Chr 17, Massachusetts Institute of Technology 199 unknown 100036441 W10q9 - - - weight 10 weeks QTL 9 unknown 328783 Mm.183275 NM_177822 ENSMUSG00000041062 Mslnl 4732467B22 - 17|17 A3.3 mesothelin-like protein-coding 110862 Mm.255585 NM_152923 ENSMUSG00000056258 Kcnq3 - - 15 D1|15 29.16 cM potassium voltage-gated channel, subfamily Q, member 3 protein-coding 102639424 XR_373718 Gm35742 - - 1 H3|1 predicted gene, 35742 ncRNA 665395 Gm7618 EG665395 - 6|6 G3 ribosomal protein S29 pseudogene pseudo 66964 Mm.3676 NM_025872 ENSMUSG00000030245 Golt1b 2310061A22Rik|AA407874|AU024291|CGI-141 - 6|6 G2 golgi transport 1B protein-coding 108167499 XR_001778347 Gm46017 - - 7 D1|7 predicted gene, 46017 ncRNA 102638442 Mm.160050 XR_385697 4930435F05Rik - - 17|17 E1.1 RIKEN cDNA 4930435F05 gene ncRNA 104886 Mm.172847 NM_134050 ENSMUSG00000021062 Rab15 2310012G06Rik|AI840042 - 12|12 C3 RAB15, member RAS oncogene family protein-coding 114691 Skull4 E3|L3|QTL-S3.1 - 3 32.25 cM skull morphology 4 unknown 22029 Mm.239514 NM_009421 ENSMUSG00000026875 Traf1 4732496E14Rik - 2|2 B TNF receptor-associated factor 1 protein-coding 13427 Mm.249479 NM_010064 ENSMUSG00000027012 Dync1i2 3110079H08Rik|AW554389|Dncic2 - 2 C2|2 42.38 cM dynein cytoplasmic 1 intermediate chain 2 protein-coding 100038697 Mm.454532 Gm10912 Gm10799 - 2 E2|2 predicted gene 10912 unknown 100416056 Gm12997 - - 4|4 D1 tetraspanin 17 pseudogene pseudo 105247129 XR_881261 Gm42284 - - 4 B1|4 predicted gene, 42284 ncRNA 105245943 XR_875325 Gm41315 - - 15 B3.1|15 predicted gene, 41315 ncRNA 19466 Rb(10.15)23Lub Rb23Lub - - Robertsonian translocation, Chr 10 and 15, Lubeck 23 other 102640186 Gm29201 - - 18|18 predicted gene 29201 pseudo 61491 D7Mit184 - - 7 52.81 cM DNA segment, Chr 7, Massachusetts Institute of Technology 184 unknown 100036162 Abfp1 - - - abdominal fat percentage 1 unknown 102466158 NR_105835 ENSMUSG00000099279 Mir6408 Gm27451|mmu-mir-6408 - 10|10 B4 microRNA 6408 ncRNA 100418113 Gm19007 - - 10|10 D1 sulfotransferase family, cytosolic, 1C, member 2 pseudogene pseudo 100035036 Arigg4 - - - anti-RBC IgG antibodies 4 unknown 106780818 Obox4-ps32 - - 7 A2|7 oocyte specific homeobox 4, pseudogene 32 pseudo 78906 Mm.33087 NM_030218 ENSMUSG00000035852 Misp 9130017N09Rik - 10|10 C1 mitotic spindle positioning protein-coding 100035732 Nhdlq2 - - X 20.59 cM non-HDL QTL 2 unknown 22764 Mm.919 NM_011768 ENSMUSG00000079509 Zfx Zfx5|Zfx5,6|Zfx6 - X C3|X 41.48 cM zinc finger protein X-linked protein-coding 100416399 Gm18096 - - 11|11 E1 ribosomal protein S2 pseudogene pseudo 28093 DYzEms7 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 7 unknown 13190 Mm.19987 NM_010024 ENSMUSG00000022129 Dct DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt - 14 E4|14 61.6 cM dopachrome tautomerase protein-coding 108167613 LOC108167613 - - 1 A2 replication protein A 14 kDa subunit pseudogene pseudo 387189 NR_029580 ENSMUSG00000065581 Mir194-1 Mirn194|Mirn194-1|miR-194|mir-194-1 - 1|1 H5 microRNA 194-1 ncRNA 102639359 XR_379661 Gm35690 - - 9 E1|9 predicted gene, 35690 ncRNA 670717 Gm10108 - - 5|5 A1 cytochrome c, somatic pseudogene pseudo 105245138 XR_871611 Gm40631 - - 10 B2|10 predicted gene, 40631 ncRNA 780957 Ighv8-10 - - 12|12 F2 immunoglobulin heavy variable V8-10 pseudo 100504538 Mm.442373 Gm20274 - - 7|7 F3 predicted gene, 20274 unknown 102632066 Mm.380732 XR_381990 Gm30238 - - 12 F1|12 predicted gene, 30238 ncRNA 666642 XM_985134 Gm8210 EG666642 - 1|1 B predicted pseudogene 8210 pseudo 629203 Mm.482066 NM_001101586 ENSMUSG00000074375 Sult2a3 EG629203|Gm6955 - 7|7 A1 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3 protein-coding 100417637 Gm18727 - - 1|1 G3 golgi SNAP receptor complex member 1 pseudogene pseudo 103986 Wt - - - waltzer-type unknown 16832 Mm.9745 NM_008492 ENSMUSG00000030246 Ldhb AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2 - 6 G2|6 74.17 cM lactate dehydrogenase B protein-coding 100862224 Gm21572 - - Y|Y predicted gene, 21572 protein-coding 665961 Vmn2r-ps128 EG665961|Gm7864 - 17|17 A3.3 vomeronasal 2, receptor, pseudogene 128 pseudo 23963 Mm.327698 NM_011855 ENSMUSG00000016150 Tenm1 Odz1|Odz2|TCAP-1|Ten-m1|ten-1 - X|X A4 teneurin transmembrane protein 1 protein-coding 100038393 Gm10183 - - - predicted gene 10183 unknown 62690 D17Mit101 - - 17 15.17 cM DNA segment, Chr 17, Massachusetts Institute of Technology 101 unknown 78812 NR_036597 4930570E03Rik - - 16|16 C3.1 RIKEN cDNA 4930570E03 gene ncRNA 667791 Gm8814 EG667791 - X|X F5 ferritin light chain 2 pseudogene pseudo 58239 Mm.353006 NM_021428 ENSMUSG00000038055 Dexi 1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle - 16 A1|16 5.67 cM dexamethasone-induced transcript protein-coding 170665 Pcho1 - - 1 82.24 cM plasma cholesterol 1 unknown 64074 Mm.30162 NM_022315 ENSMUSG00000023886 Smoc2 1700056C05Rik|5430426J21Rik|Smoc2l - 17 A2|17 8.95 cM SPARC related modular calcium binding 2 protein-coding 103659 AI256734 - - - expressed sequence AI256734 unknown 100416022 Gm17875 - - 9|9 C predicted gene, 17875 pseudo 668153 Gm9007 EG668153 - 6|6 C2 predicted gene 9007 pseudo 171250 Mm.377205 NM_134216 ENSMUSG00000101578 Vmn1r206 V1rh7 - 13|13 A3.1 vomeronasal 1 receptor 206 protein-coding 102640098 LOC102640098 - - 2 A1 polypyrimidine tract-binding protein 1 pseudogene pseudo 102638635 XR_001779200 Gm35152 - - 9 B|9 predicted gene, 35152 ncRNA 111469 Ms6hm3 PC-2 - - minisatellite 6 hypermutable 3 other 108168704 XR_001782996 LOC108168704 - - - uncharacterized LOC108168704 ncRNA 96953 C76793 - - - expressed sequence C76793 protein-coding 623804 Gm6451 EG623804 - X|X F3 NSA2 ribosome biogenesis homolog pseudogene pseudo 493124 Ctrcts - - 4 24.28 cM cataract severity unknown 100041781 Mm.491530 XR_001784803 Gm3510 - - 5 A2|5 predicted gene 3510 ncRNA 102640176 Gm36305 - - 8|8 predicted gene, 36305 pseudo 111614 Xmv47 Xmv-47 - - xenotropic murine leukemia virus 47 other 108167993 XR_001780576 Gm46343 - - 12 A1.3|12 predicted gene, 46343 ncRNA 98207 AA517027 - - - expressed sequence AA517027 unknown 52615 Mm.283410 NM_199196 ENSMUSG00000017548 Suz12 2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160 - 11 B5|11 47.36 cM SUZ12 polycomb repressive complex 2 subunit protein-coding 100384872 Gm13039 - - 4 E1|4 76.98 cM ribosomal protein L7A pseudogene pseudo 671950 Gm14702 - - X|X A7.1 predicted gene 14702 protein-coding 103334 AU015148 - - - expressed sequence AU015148 unknown 100036422 Hwq1 - - 14 38.82 cM heart weight quantitative locus 1 unknown 51870 D2Ertd112e - - 2 30.49 cM DNA segment, Chr 2, ERATO Doi 112, expressed unknown 100126242 Mm.392746 NR_045912 ENSMUSG00000086930 Frs3os 4930417B13Rik|Gm14873 - 17|17 C fibroblast growth factor receptor substrate 3, opposite strand ncRNA 100124477 Mir590 Mirn590|mmu-mir-590 - - microRNA 590 ncRNA 66832 Mm.29830 NM_025789 ENSMUSG00000073471 Rsph3a 1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a - 17|17 A1 radial spoke 3A homolog (Chlamydomonas) protein-coding 15110 Mm.4746 NM_008213 ENSMUSG00000037335 Hand1 Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND - 11 B1.3|11 35.27 cM heart and neural crest derivatives expressed 1 protein-coding 109580 Es5 Es-5 - - esterase 5 protein-coding 110120566 LOC110120566 - - - VISTA enhancer mm1098 biological-region 105246098 Gm41441 - - 16|16 predicted gene, 41441 ncRNA 240590 Mm.62785 NM_177360 ENSMUSG00000042372 Dmrt3 - - 19|19 B doublesex and mab-3 related transcription factor 3 protein-coding 214359 Mm.27587 NM_145402 ENSMUSG00000040616 Tmem51 BC003277 - 4|4 E1 transmembrane protein 51 protein-coding 668726 Gm9321 EG668726 - 12|12 A1.3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 228005 Mm.11815 NM_001081086 ENSMUSG00000042133 Ppig AU019516|AU022200|B230312B02Rik|CYP|SRCyp - 2|2 C2 peptidyl-prolyl isomerase G (cyclophilin G) protein-coding 100417626 Gm18724 - - 16|16 A1 zinc finger CCCH-type containing 15 pseudogene pseudo 76068 5830437K03Rik - - 3|3 RIKEN cDNA 5830437K03 gene protein-coding 21822 Mm.15793 NM_011579 ENSMUSG00000078922 Tgtp1 Gtp2|Irgb6|Mg21|Tgtp - 11|11 B1.2 T cell specific GTPase 1 protein-coding 384868 Gm5357 EG384868 - 8|8 E1 NDC80 homolog, kinetochore complex component pseudogene pseudo 83556 Mm.190608 NM_031382 ENSMUSG00000034555 Tex16 - - X|X E1 testis expressed gene 16 protein-coding 56534 Mm.41410 NM_019960 ENSMUSG00000051456 Hspb3 2310035K17Rik|AI844863|Hsbp3|spb3 - 13|13 D2.2 heat shock protein 3 protein-coding 108168550 XM_017318742 LOC108168550 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 112387 Eae5 - - 17 19.58 cM experimental allergic encephalomyelitis susceptibility 5 unknown 62787 D15Mit208 - - 15 26.86 cM DNA segment, Chr 15, Massachusetts Institute of Technology 208 unknown 102636961 XR_389651 Gm33886 - - 3 A3|3 predicted gene, 33886 ncRNA 62384 D14Mit137 - - 14 12.52 cM DNA segment, Chr 14, Massachusetts Institute of Technology 137 unknown 225825 Mm.139293 NM_178687 ENSMUSG00000034028 Cd226 BC051526|DNAM-1|DNAM1|Pta1|TLiSA1 - 18|18 E4 CD226 antigen protein-coding 102636467 XR_383554 Gm33524 - - 14 D2|14 predicted gene, 33524 ncRNA 102467418 n-TTcgt2 n-Tt11 - 13 A3.1|13 nuclear encoded tRNA threonine 2 (anticodon CGT) tRNA 231464 Mm.28374 NM_144910 ENSMUSG00000034724 Cnot6l 4932442K20Rik - 5|5 E3 CCR4-NOT transcription complex, subunit 6-like protein-coding 13171 Mm.3636 NM_010022 ENSMUSG00000000340 Dbt BCKAD-E2|D3Wsu60e - 3 G1|3 50.37 cM dihydrolipoamide branched chain transacylase E2 protein-coding 102640278 Mm.405208 XR_001779606 Gm36388 - - 1 H5|1 predicted gene, 36388 ncRNA 102632308 XR_389755 Gm30417 - - 5 A2|5 predicted gene, 30417 ncRNA 61463 D6Mit200 - - 6 77.7 cM DNA segment, Chr 6, Massachusetts Institute of Technology 200 unknown 102634394 XR_865778 Gm31986 - - 1 H4|1 predicted gene, 31986 ncRNA 21673 Mm.25620 NM_009345 ENSMUSG00000025014 Dntt Tdt - 19 C3|19 34.32 cM deoxynucleotidyltransferase, terminal protein-coding 60920 D9Mit35 - - 9 51.41 cM DNA segment, Chr 9, Massachusetts Institute of Technology 35 unknown 14281 Mm.246513 NM_010234 ENSMUSG00000021250 Fos D12Rfj1|c-fos|cFos - 12 D2|12 39.7 cM FBJ osteosarcoma oncogene protein-coding 62141 D13Mit76 - - 13 62.35 cM DNA segment, Chr 13, Massachusetts Institute of Technology 76 unknown 272359 Mm.274237 NM_178757 ENSMUSG00000044030 Irf2bp1 6330414O09Rik|C530033F24 - 7|7 A3 interferon regulatory factor 2 binding protein 1 protein-coding 101056204 XR_378297 Gm29796 - - 7 D3|7 predicted gene, 29796 ncRNA 67943 Mm.117365 NM_023403 ENSMUSG00000038503 Mesd 2210015O11Rik|AW537813|Mesdc2|mKIAA0081|mesd|msd - 7 48.35 cM|7 D3 mesoderm development LRP chaperone protein-coding 78912 Mm.491183 NM_030220 ENSMUSG00000018678 Sp2 4930480I16Rik|mKIAA0048 - 11|11 D Sp2 transcription factor protein-coding 100418211 Gm16167 - - 8|8 C3 potassium channel tetramerisation domain containing 7 pseudogene pseudo 102640878 Gm21910 - - Y|Y predicted gene, 21910 protein-coding 100041892 Vmn2r-ps102 - - 13|13 B3 vomeronasal 2, receptor, pseudogene 102 pseudo 112233 Bhr1 - - - bronchial hyperresponsiveness 1 unknown 101202684 Mm.381468 NR_102714 ENSMUSG00000087601 Uchl1os Gm16832|Uchl1as - 5 C3.1|5 ubiquitin carboxy-terminal hydrolase L1, opposite strand ncRNA 16862 lgl - - - legless unknown 100042314 Mm.482247 NM_001122660 ENSMUSG00000074179 Gm10639 - - 9|9 E1 predicted gene 10639 protein-coding 666374 Gm8067 EG666374 - 10|10 B1 high mobility group box 1-like pseudogene pseudo 70101 Mm.30504 NM_024442 ENSMUSG00000048440 Cyp4f16 2310021J05Rik|AI746515 - 17|17 B1 cytochrome P450, family 4, subfamily f, polypeptide 16 protein-coding 27378 Mm.485527 NM_013772 ENSMUSG00000068940 Tcl1b3 - - 12|12 E T cell leukemia/lymphoma 1B, 3 protein-coding 102467290 n-TCgca56 n-Tc56 - 11 D|11 nuclear encoded tRNA cysteine 56 (anticodon GCA) tRNA 100417199 Gm18444 - - 1|1 E2.3 crumbs homolog 1 pseudogene pseudo 111547 Pmv31 Pmv-31 - - polytropic murine leukemia virus 31 other 100628597 NR_039590 ENSMUSG00000092958 Mir5128 mir-5128|mmu-mir-5128|mu-mir-5128 - 2 B|2 24.19 cM microRNA 5128 ncRNA 258801 Mm.223228 NM_146805 ENSMUSG00000094810 Olfr907 MOR165-5 - 9|9 A5.1 olfactory receptor 907 protein-coding 106619 AI553519 - - - expressed sequence AI553519 unknown 100198 Mm.22183 NM_173371 ENSMUSG00000028980 H6pd AI785303|G6pd1|Gpd-1|Gpd1 - 4 E2|4 80.65 cM hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) protein-coding 102632582 XR_386084 Gm30620 - - 18 A1|18 predicted gene, 30620 ncRNA 629893 Ighv1-31 Gm16965 - 12|12 F2 immunoglobulin heavy variable 1-31 other 102633862 XR_379587 Gm31587 - - 9 D|9 predicted gene, 31587 ncRNA 75279 Mm.401987 NR_040633 ENSMUSG00000086396 4930555B11Rik - - 2|2 C1.1 RIKEN cDNA 4930555B11 gene ncRNA 105244288 XR_866722 Gm39927 - - 2 F1|2 predicted gene, 39927 ncRNA 105243765 XR_881850 Gm39557 - - 7 A2|7 predicted gene, 39557 protein-coding 27542 D15N7 51E19Sp6 - - DNA segment, Chr 15, NIH 7 unknown 102641050 LOC102641050 - - - 60S acidic ribosomal protein P1 pseudogene pseudo 100042636 Mm.302158 NM_001105066 ENSMUSG00000070841 Vmn2r34 - - 7|7 A1 vomeronasal 2, receptor 34 protein-coding 102635861 Gm29179 - - Y|Y predicted gene 29179 ncRNA 114278 Manh11 QTL-SH9.1 - - mandible shape 11 unknown 23954 Mm.41413 NM_011848 ENSMUSG00000031478 Nek3 - - 8 A2|8 11.07 cM NIMA (never in mitosis gene a)-related expressed kinase 3 protein-coding 100043792 Mm.41113 Gm14066 - - 2|2 F3 predicted gene 14066 protein-coding 97122 Mm.227295 NM_033596 ENSMUSG00000091405 Hist2h4 H4|X04652 - 3|3 F2.1 histone cluster 2, H4 protein-coding 492897 Egrm2 - - 6 37.96 cM early growth rate, maternal effect 2 unknown 72927 Mm.266133 NM_175189 ENSMUSG00000046240 Hepacam 2900042E01Rik|Glialcam|Hepn1 - 9|9 A4 hepatocyte cell adhesion molecule protein-coding 102631833 Mm.330586 XR_374975 Gm14040 - - 2 F1|2 63.12 cM predicted gene 14040 ncRNA 100035372 Hemq1 - - 1 50.93 cM hematocrit QTL 1 unknown 105245096 XR_871424 Gm40594 - - 10 A1|10 predicted gene, 40594 ncRNA 73699 Mm.7726 NM_028614 ENSMUSG00000032058 Ppp2r1b 2410091N08Rik|AI790395 - 9|9 A5.3 protein phosphatase 2, regulatory subunit A, beta protein-coding 435484 Gm5676 EG435484 - 16|16 C3.3 cell division cycle 5-like pseudogene pseudo 51840 D3Ggc3e - - - DNA segment, Chr 3, G. Consalez 3, expressed unknown 105244149 XR_866202 Gm39813 - - 2 C1.1|2 predicted gene, 39813 ncRNA 171207 Mm.482337 NM_138630 ENSMUSG00000031389 Arhgap4 A130009C12Rik|A530015A20Rik|Rgc1|c1|mKIAA0131 - X|X A7.3 Rho GTPase activating protein 4 protein-coding 30923 Mm.377122 NM_015758 ENSMUSG00000044518 Foxe3 FREAC8|dyl|rct - 4 52.73 cM|4 D1 forkhead box E3 protein-coding 70516 5730408A14Rik - - 1|1 RIKEN cDNA 5730408A14 gene protein-coding 102638567 XR_380741 Gm35101 - - 10 D1|10 predicted gene, 35101 ncRNA 102640314 XR_389696 Gm36412 - - 3 B|3 predicted gene, 36412 ncRNA 102466786 NR_105976 ENSMUSG00000098808 Mir7009 Gm27472|mmu-mir-7009 - 3|3 B microRNA 7009 ncRNA 100039833 Gm11259 - - 4|4 C3 Gm11259 pseudogene pseudo 239719 Mm.270643 NM_153588 ENSMUSG00000009569 Mkl2 Gt4-1|MRTF-B|Mrtfb|mKIAA1243 - 16|16 A1 MKL/myocardin-like 2 protein-coding 238328 Mm.216101 NM_177354 ENSMUSG00000021256 Vash1 AI834978|D930046M13Rik|G630009D10Rik - 12|12 D2 vasohibin 1 protein-coding 108168115 XR_001781067 Gm46440 - - 13 B3|13 predicted gene, 46440 ncRNA 13232 Mm.436573 Defa13 Defcr13 - 8|8 defensin, alpha, 13 protein-coding 13329 Del(9)4H Del4H - - deletion, Chr 9, Harwell 4 other 723920 NR_029653 ENSMUSG00000065552 Mir302a Mirn302|Mirn302a|mir-302a|mmu-mir-302 - 3|3 G2 microRNA 302a ncRNA 666211 Gm7984 EG666211 - 8|8 C1 predicted gene 7984 pseudo 100504197 Gm13771 - - 2|2 50.63 cM cytochrome c oxidase subunit 7B, mitochondrial-like pseudo 85215 D17Mit162 - - 17 54.62 cM DNA segment, Chr 17, Massachusetts Institute of Technology 162 unknown 54137 Mm.347910 NM_016845 ENSMUSG00000072770 Acrbp OY-TES-1|sp32 - 6|6 F2 proacrosin binding protein protein-coding 619886 Ighv1-71 EG619886|Gm6110 - 12|12 F2 immunoglobulin heavy variable 1-71 other 105242671 XR_869140 Gm38823 - - 6 B3|6 predicted gene, 38823 ncRNA 52996 3b11 - - - DNA segment, 3b11 unknown 70649 5730575I04Rik - - 2|2 RIKEN cDNA 5730575I04 gene protein-coding 108168428 XR_001782722 LOC108168428 - - 19 C3 uncharacterized LOC108168428 ncRNA 77425 9430081G06Rik - - 13|13 RIKEN cDNA 9430081G06 gene protein-coding 28052 D16Ium17e D16Ium17 - - DNA segment, Chr 16, Indiana University Medical 17, expressed unknown 116764 Cocrb13 - - - cocaine related behavior 13 unknown 246317 Mm.329578 NM_144946 ENSMUSG00000050321 Neto1 AI851453|Btcl1|C130005O10Rik - 18|18 E4 neuropilin (NRP) and tolloid (TLL)-like 1 protein-coding 108167657 XR_001779193 Gm46116 - - 9 B|9 predicted gene, 46116 ncRNA 73452 Mm.396233 NR_045383 ENSMUSG00000101978 1700063O14Rik - - 5|5 E2 RIKEN cDNA 1700063O14 gene ncRNA 60862 D6Mit41 - - - DNA segment, Chr 6, Massachusetts Institute of Technology 41 unknown 72689 Mm.410848 2810047F03Rik - - 9|9 RIKEN cDNA 2810047F03 gene protein-coding 111826 Iapls1-49 - - - intracisternal A particle, lymphocyte specific 1-49 other 67370 Mm.98929 NM_026112 ENSMUSG00000030386 Zfp606 2410022M24Rik|AW494727 - 7|7 A1 zinc finger protein 606 protein-coding 62833 D12Mit239 - - 12 42.77 cM DNA segment, Chr 12, Massachusetts Institute of Technology 239 unknown 102637226 XR_384296 Gm34095 - - 15 E2|15 predicted gene, 34095 ncRNA 85223 D13Mit214 - - 13 64.68 cM DNA segment, Chr 13, Massachusetts Institute of Technology 214 unknown 105245455 XR_873213 Gm40906 - - 13 A3.3|13 predicted gene, 40906 ncRNA 70821 Mm.157323 NM_027564 ENSMUSG00000029828 4921507P07Rik TISP74 - 6|6 B2.3 RIKEN cDNA 4921507P07 gene protein-coding 100417546 Rab5a-ps Gm18680 - 17|17 C RAB5A, member RAS oncogene family, pseudogene pseudo 21340 Mm.39082 NM_020614 ENSMUSG00000059669 Taf1b 4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63 - 12|12 A1.3 TATA-box binding protein associated factor, RNA polymerase I, B protein-coding 100503437 Gm19691 - - X|X 42.59 cM predicted gene, 19691 ncRNA 66761 Mm.157047 NM_025750 ENSMUSG00000021415 4933417A18Rik - - 13|13 A3.3 RIKEN cDNA 4933417A18 gene protein-coding 667662 Gm8750 EG667662 - 17|17 B1 archain 1 pseudogene pseudo 638502 Gm7240 EG638502 - 13 B3|13 predicted gene 7240 pseudo 102633667 XR_386100 Gm31437 - - 18 A2|18 predicted gene, 31437 ncRNA 110919 Lamr1-rs7 67kDa|P40-rs7 - - laminin receptor 1 (ribosomal protein SA), related sequence 7 protein-coding 105245618 XR_873895 Gm41048 - - 13 D1|13 predicted gene, 41048 ncRNA 493090 Pltiq1 - - 4 74.75 cM phospholipid transfer protein inducibility QTL 1 unknown 654435 C79927 - - 13|13 expressed sequence C79927 unknown 226089 Mm.353838 NM_177641 ENSMUSG00000038658 Ric1 C030046E11Rik|C130057E09Rik|Kiaa1432 - 19|19 C1 RAB6A GEF complex partner 1 protein-coding 108587 Iap5ra6 - - - intracisternal A-type particle, U5 region, SINE repeat a-6 other 93861 D18Jor1 - - - DNA segment, Chr 18, Barbara Jordan 1 unknown 102639392 XR_386155 Gm35718 - - 18 B1|18 predicted gene, 35718 ncRNA 235634 Mm.31788 NM_001195437 ENSMUSG00000096393 Fam240a Gm590 - 9|9 F2 family with sequence similarity 240 member A protein-coding 67896 Mm.181074 NM_026439 ENSMUSG00000022665 Ccdc80 2610001E17Rik|DRO1|Ssg1|Urb - 16|16 B5 coiled-coil domain containing 80 protein-coding 102467515 n-TQttg3 n-Tq13 - 13 A3.1|13 nuclear encoded tRNA glutamine 3 (anticodon TTG) tRNA 108392 Pmv34 Pmv-34 - - polytropic murine leukemia virus 34 other 100417837 Gm18858 - - 13|13 A1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 pseudogene pseudo 105244950 LOC105244950 - - - uncharacterized LOC105244950 ncRNA 104148 Lvs DMS - - lacking vigorous sperm unknown 21911 tm - - - tremulous unknown 384594 Gm5329 EG384594 - 7|7 B1 predicted gene 5329 protein-coding 78439 Mm.440446 NR_153849 ENSMUSG00000109408 A930037H05Rik Gm44935 - 11|11 RIKEN cDNA A930037H05 gene ncRNA 110470 Tcra-V8.2 - - - T cell receptor alpha, variable 8.2 other 109997 Tsp4 - - - tumor suppressor region 4 protein-coding 359876 DXMgc27 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 27 unknown 108169046 XR_001784868 Gm46914 - - 5 C3.1|5 predicted gene, 46914 ncRNA 105264 Mm.394749 AU016102 - - - expressed sequence AU016102 protein-coding 60905 D8Mit67 - - 8 28.91 cM DNA segment, Chr 8, Massachusetts Institute of Technology 67 unknown 102637398 XR_376435 Gm34218 - - 4 C6|4 predicted gene, 34218 ncRNA 240328 Mm.329461 NM_001101475 ENSMUSG00000090942 F830016B08Rik Ifgga4 - 18|18 D3 RIKEN cDNA F830016B08 gene protein-coding 210029 Mm.153566 NM_144797 ENSMUSG00000039208 Metrnl 9430048M07Rik|BC019776 - 11|11 E2 meteorin, glial cell differentiation regulator-like protein-coding 60832 D4Mit80 - - 4 37.89 cM DNA segment, Chr 4, Massachusetts Institute of Technology 80 unknown 100124585 Vmn2r-ps144 - - Y|Y B vomeronasal 2, receptor, pseudogene 144 pseudo 56353 Mm.321633 NM_019743 ENSMUSG00000072872 Rybp 2410018J24Rik|DEDAF|YEAF1 - 6|6 D3 RING1 and YY1 binding protein protein-coding 67325 Mm.490791 NR_045396 ENSMUSG00000097962 1700034G24Rik - - 5|5 F RIKEN cDNA 1700034G24 gene ncRNA 102639899 Mm.401895 XR_873362 Gm36101 - - 13 A5|13 predicted gene, 36101 ncRNA 108167715 Gm29658 - - 1 E2.3|1 small nuclear ribonucleoprotein G pseudogene pseudo 100503036 Mm.279725 NM_001195601 ENSMUSG00000094445 1700015G11Rik Ccdc179 - 7|7 B4 RIKEN cDNA 1700015G11 gene protein-coding 100861630 Gm21088 - - Y|Y predicted gene, 21088 protein-coding 170718 Mm.29590 NM_130884 ENSMUSG00000027406 Idh3b C78231 - 2|2 F1 isocitrate dehydrogenase 3 (NAD+) beta protein-coding 102642295 LOC102642295 - - - fibrillin-2 protein-coding 100504694 Gm12459 - - 4|4 26.83 cM predicted gene 12459 pseudo 14761 Mm.394313 NM_008158 ENSMUSG00000072875 Gpr27 - - 6|6 D3 G protein-coupled receptor 27 protein-coding 100043087 Gm4219 - - 19 D3|19 predicted gene 4219 protein-coding 105244145 XR_001783612 Gm13485 - - 2 C1.1|2 29.01 cM predicted gene 13485 ncRNA 433550 Gm13675 - - 2|2 D mitochondrial ribosomal protein L18 pseudogene pseudo 243197 Mm.106818 NM_172883 ENSMUSG00000029490 Mfsd7a 4732482E20Rik|Mfsd7|Slc49a3 - 5|5 F major facilitator superfamily domain containing 7A protein-coding 66406 Mm.303924 NM_133678 ENSMUSG00000024790 Sac3d1 2410004C24Rik|AU015683|shd1 - 19|19 A SAC3 domain containing 1 protein-coding 68350 Mm.103413 NM_026689 ENSMUSG00000041241 Mul1 0610009K11Rik|AV000801|Gide - 4|4 D3 mitochondrial ubiquitin ligase activator of NFKB 1 protein-coding 69605 Mm.156113 NM_027133 ENSMUSG00000009207 Lnpk 2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless - 2|2 C3 lunapark, ER junction formation factor protein-coding 105245150 XR_871638 Gm40643 - - 10 B3|10 predicted gene, 40643 ncRNA 67785 Mm.165401 NM_001114399 ENSMUSG00000042446 Zmym4 6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425 - 4|4 D2.2 zinc finger, MYM-type 4 protein-coding 105243980 XR_872366 Gm39679 - - 11 A4|11 predicted gene, 39679 ncRNA 13423 Mm.350831 NM_010062 ENSMUSG00000003812 Dnase2a Dnase2 - 8 C3|8 41.31 cM deoxyribonuclease II alpha protein-coding 62231 D17Mit41 - - 17 55.02 cM DNA segment, Chr 17, Massachusetts Institute of Technology 41 unknown 224705 Mm.448614 NM_172620 ENSMUSG00000024319 Vps52 ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5 - 17|17 B1 VPS52 GARP complex subunit protein-coding 27621 D11Moh9 - - - DNA segment, Chr 11, KL Mohlke 9 unknown 100047554 Gm17781 - - 1|1 E4 uncharacterized protein C1orf43 homolog pseudo 114066 Heal2 - - 13 63.03 cM wound healing/regeneration 2 unknown 257980 Mm.377323 NM_001011795 ENSMUSG00000074966 Olfr1275 MOR245-18 - 2|2 E3 olfactory receptor 1275 protein-coding 105244391 XR_867068 Gm40010 - - 2 H3|2 predicted gene, 40010 ncRNA 62601 D13Mit130 - - 13 61.69 cM DNA segment, Chr 13, Massachusetts Institute of Technology 130 unknown 50760 Mm.358659 NM_015796 ENSMUSG00000030598 Fbxo17 Fbg4|Fbx17|Fbxo26 - 7|7 B1 F-box protein 17 protein-coding 666077 Gm7919 EG666077 - 5|5 E3 predicted gene 7919 pseudo 108163 Sdc-ps2 Synd-ps2 - - syndecan, pseudogene 2 pseudo 105247107 XR_881172 Gm42265 - - 4 A5|4 predicted gene, 42265 ncRNA 101056075 LOC101056075 - - 2 C2 non-histone chromosomal protein HMG-17 pseudogene pseudo 61205 D1Mit139 - - 1 54.7 cM DNA segment, Chr 1, Massachusetts Institute of Technology 139 unknown 50701 Mm.262194 NM_015779 ENSMUSG00000020125 Elane Ela2|F430011M15Rik|NE - 10 C1|10 39.72 cM elastase, neutrophil expressed protein-coding 67916 Mm.348326 NM_080555 ENSMUSG00000028517 Plpp3 1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b - 4 C6|4 49.18 cM phospholipid phosphatase 3 protein-coding 108167962 Gm17053 - - 12 F1|12 57.09 cM predicted gene 17053 pseudo 102633608 XR_383253 Gm31392 - - 14 A3|14 predicted gene, 31392 ncRNA 71501 8430425A16Rik BB162079 - X|X RIKEN cDNA 8430425A16 gene protein-coding 105246442 XR_877436 Gm41731 - - 18 D3|18 predicted gene, 41731 ncRNA 102466799 NR_106035 ENSMUSG00000098976 Mir6769b Gm27546|mmu-mir-6769b - 8|8 B3.3 microRNA 6769b ncRNA 668565 Gm9246 EG668565 - 7|7 B3 zinc finger, MYND-type containing 8 pseudogene 2 pseudo 102642544 Gm38614 - - 8|8 predicted gene, 38614 ncRNA 102632465 Mm.329980 XR_373977 Gm13391 - - 2|2 A1 predicted gene 13391 ncRNA 102637031 Gm33942 - - 17|17 predicted gene, 33942 ncRNA 85039 D9Mit9 - - - DNA segment, Chr 9, Massachusetts Institute of Technology 9 unknown 56185 Mm.281874 NM_019545 ENSMUSG00000027870 Hao2 AI325478|Hao-2|Hao3|Haox3 - 3 F2.2|3 42.9 cM hydroxyacid oxidase 2 protein-coding 21856 Mm.195249 NM_011592 ENSMUSG00000002949 Timm44 0710005E20Rik|D8Ertd118e|Mimt44|Tim44 - 8 A1.1|8 1.99 cM translocase of inner mitochondrial membrane 44 protein-coding 102637600 Gm34367 - - 11|11 predicted gene, 34367 ncRNA 20592 Mm.262676 NM_011419 ENSMUSG00000056673 Kdm5d HY|Jarid1d|Smcy - Y|Y A1 lysine (K)-specific demethylase 5D protein-coding 21293 T(X;11)38H T38H - - reciprocal translocation, Chr X and 11, Harwell 38 other 108169169 XR_001785372 Gm46976 - - 6 F3|6 predicted gene, 46976 ncRNA 105246181 XM_011246170 Gm41515 EG621595|Krtap19-7 - 16 C3.3|16 predicted gene, 41515 protein-coding 105243536 Gm39428 - - 9|9 predicted gene, 39428 ncRNA 100503538 Mm.445166 NR_045283 ENSMUSG00000086992 Gm15941 - - 15 B3.1|15 14.97 cM predicted gene 15941 ncRNA 105244677 Mm.243744 XR_868095 1700121C08Rik - - 4|4 D2.2 RIKEN cDNA 1700121C08 gene ncRNA 100041069 Gm3123 - - 14|14 C1 predicted gene 3123 pseudo 229615 Mm.1635 NM_018812 ENSMUSG00000028101 Pias3 Pias3l - 3|3 F2.1 protein inhibitor of activated STAT 3 protein-coding 102638736 XR_385700 Gm35228 - - 17 E1.1|17 predicted gene, 35228 ncRNA 667931 Mm.214128 NR_027658 ENSMUSG00000099707 Gm8883 EG667931|Gm554 - 1|1 C3 predicted gene 8883 ncRNA 62164 D14Mit62 - - 14 26.46 cM DNA segment, Chr 14, Massachusetts Institute of Technology 62 unknown 100035416 Elnv - - 9 16.84 cM epilepsy naive unknown 72997 Mm.254833 NR_040269 ENSMUSG00000087403 Kantr 2810454L23Rik|2900056M20Rik|Spasm - X|X F3 Kdm5c adjacent non-coding transcript ncRNA 99958 AA407111 - - - expressed sequence AA407111 protein-coding 102634989 XR_380528 Gm32438 - - 10 B5.1|10 predicted gene, 32438 ncRNA 100042217 Gm3727 - - 14 A1|14 predicted gene 3727 protein-coding 233887 Mm.258371 NM_146201 ENSMUSG00000045598 Zfp553 2600009K23Rik|AI431057|BC026401|C330013F15Rik|Znf48 - 7|7 F3 zinc finger protein 553 protein-coding 22283 Mm.331238 NM_021408 ENSMUSG00000026609 Ush2a A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Ushrn - 1 H6|1 92.29 cM usherin protein-coding 102635911 XR_001779318 Platr11 Gm26975 - 9 F3|9 pluripotency associated transcript 11 ncRNA 100534305 Gm21021 - - 14|14 D1 deubiquitinating enzyme 1 pseudogene pseudo 214489 Mm.274433 NM_183150 ENSMUSG00000067722 BC003965 Ccsmst1 - 17|17 A3.3 cDNA sequence BC003965 protein-coding 111618 Pmv81 - - - polytropic murine leukemia virus 81 other 626746 Gm6704 EG626746 - 15|15 B3.1 small nuclear ribonucleoprotein polypeptide G pseudogene pseudo 78591 Mm.372207 Mir142hg A430104N18Rik|AW909330 - 11|11 Mir142 host gene (non-protein coding) protein-coding 60901 D8Mit56 - - 8 76.14 cM DNA segment, Chr 8, Massachusetts Institute of Technology 56 unknown 692180 Igkv14-126-1 co9 - 6|6 C1 immunoglobulin kappa chain variable 14-126-1 pseudo 14296 Mm.4573 NM_008043 ENSMUSG00000067199 Frat1 AW060382 - 19 C3|19 35.3 cM frequently rearranged in advanced T cell lymphomas protein-coding 100418177 Gm14890 - - X|X A6 histidyl-tRNA synthetase 2, mitochondrial (putative) pseudogene pseudo 99171 Mm.442265 AU015584 - - - expressed sequence AU015584 unknown 102467228 n-TAagc4 n-Ta4 - - nuclear encoded tRNA alanine 4 (anticodon AGC) tRNA 19481 Rb(12.13)3Ct Rb3Ct - - Robertsonian translocation, Chr 12 and 13, Cattanach 3 other 102641936 LOC102641936 - - - serum response factor-binding protein 1 protein-coding 102633511 Gm31321 - - 1|1 predicted gene, 31321 ncRNA 18575 Mm.5145 NM_011054 ENSMUSG00000004347 Pde1c - - 6 B3|6 27.65 cM phosphodiesterase 1C protein-coding 105245505 Gm40953 - - 13|13 predicted gene, 40953 ncRNA 69291 Mm.66794 NM_001033147 1700001L05Rik - - 15|15 E1 RIKEN cDNA 1700001L05 gene ncRNA 105243908 XR_865356 Gm39628 - - 1 B|1 predicted gene, 39628 ncRNA 100312572 Vmn1r-ps147 - - 17 A3.2|17 vomeronasal 1 receptor, pseudogene 147 pseudo 62047 DXMit229 - - X 43.72 cM DNA Segment, Chr X, Massachusetts Institute of Technology 229 unknown 100036572 Mm.443041 LOC100036572 - - 14|14 A1 uncharacterized LOC100036572 unknown 102638187 XR_381458 ENSMUSG00000113272 Gm34809 - - 12 A3|12 predicted gene, 34809 ncRNA 102635521 Mm.400485 XR_001785061 ENSMUSG00000097092 Gm26725 - - 5|5 C3.1 predicted gene, 26725 ncRNA 102637969 XR_373438 Gm34649 - - 1 C2|1 predicted gene, 34649 ncRNA 110739 Odc-rs19 - - - ornithine decarboxylase, related sequence 19 protein-coding 85174 D10Mit1011 D13Mit67 - 10|10 DNA segment, Chr 10, Massachusetts Institute of Technology 1011 protein-coding 102632920 XR_388203 Gm30871 - - 8 E2|8 predicted gene, 30871 ncRNA 102637974 XR_379642 Gm34654 - - 9 E1|9 predicted gene, 34654 ncRNA 381510 Mm.331486 NM_001081201 ENSMUSG00000045205 Dpy19l4 Gm1023|Narg3 - 4 A1|4 dpy-19-like 4 (C. elegans) protein-coding 654353 Gm7327 EG654353 - X|X A6 eukaryotic translation initiation factor 4E pseudogene pseudo 105057 BB042571 - - - expressed sequence BB042571 protein-coding 77135 3010033E01Rik - - - RIKEN cDNA 3010033E01 gene protein-coding 102634520 XR_386675 Gm32081 - - 19 C2|19 predicted gene, 32081 ncRNA 100418363 Gm11394 - - 13|13 A3.3 serine (or cysteine) peptidase inhibitor, clade B, member 6d pseudogene pseudo 110821 Mm.23876 NM_144844 ENSMUSG00000041650 Pcca C79630 - 14 E5|14 65.99 cM propionyl-Coenzyme A carboxylase, alpha polypeptide protein-coding 19895 Mm.17905 NM_009075 ENSMUSG00000053604 Rpia RPI - 6 C1|6 32.06 cM ribose 5-phosphate isomerase A protein-coding 105247218 XR_881588 Gm42354 - - 4 E2|4 predicted gene, 42354 ncRNA 317677 Mm.483270 NM_173864 ENSMUSG00000079343 C1s2 C1sb|EG317677|Gm5077 - 6|6 F2 complement component 1, s subcomponent 2 protein-coding 102634462 XR_878745 Gm38465 - - 5 F|5 predicted gene, 38465 ncRNA 320581 Mm.313743 NM_177197 ENSMUSG00000033520 Idi2 4833405L16Rik|IPPI2 - 13|13 A1 isopentenyl-diphosphate delta isomerase 2 protein-coding 72792 Mm.54981 NM_001144992 ENSMUSG00000026227 2810459M11Rik - - 1|1 C5 RIKEN cDNA 2810459M11 gene protein-coding 493086 Sysbp1 - - 10 34.83 cM systolic blood pressure 1 unknown 100422785 Gm12754 - - 4 A5|4 16.69 cM ribosomal protein S27A pseudogene pseudo 53016 CA7.1 - - - DNA segment, CA7.1 unknown 102631761 XR_386292 Gm30018 - - 18 E1|18 predicted gene, 30018 ncRNA 105242388 Gm38672 - - 1|1 predicted gene, 38672 ncRNA 102467561 n-TKctt2 n-Tk2 - - nuclear encoded tRNA lysine 2 (anticodon CTT) tRNA 18183 Mm.258705 NM_008734 ENSMUSG00000041014 Nrg3 ska - 14|14 B neuregulin 3 protein-coding 100502979 Gm17546 - - 15|15 50.7 cM predicted gene, 17546 ncRNA 100502993 Gm19492 - - 13|13 34.51 cM predicted gene, 19492 protein-coding 723937 NR_029952 ENSMUSG00000070072 Mir433 Mirn433|mir-433|mmu-mir-433 - 12|12 F1 microRNA 433 ncRNA 257936 Mm.376115 NM_001011774 ENSMUSG00000057207 Olfr1028 MOR198-3P|MOR198-4|MOR198-6_p|Olfr1534-ps1 - 2|2 D olfactory receptor 1028 protein-coding 61560 D9Mit182 - - 9 53.48 cM DNA segment, Chr 9, Massachusetts Institute of Technology 182 unknown 665593 Gm7704 EG665593 - 7|7 A1 zinc finger protein 772 pseudogene pseudo 102633905 XR_375258 Gm31619 - - 2 H3|2 predicted gene, 31619 ncRNA 100040109 Gm2606 - - 15 A1|15 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105247207 Gm42346 - - 4 E1|4 predicted gene, 42346 pseudo 100417966 Gm18923 - - 13|13 D2.1 predicted gene, 18923 pseudo 75210 Mm.40036 NM_145487 ENSMUSG00000038500 Prr3 4930540G07Rik|Cat56 - 17|17 B1 proline-rich polypeptide 3 protein-coding 66334 Mm.381242 XR_001779705 1700025K04Rik - - 10|10 D3 RIKEN cDNA 1700025K04 gene ncRNA 102633327 XR_374996 Gm31179 - - 2 F2|2 predicted gene, 31179 ncRNA 78249 Mm.66217 NM_030067 ENSMUSG00000023918 Adgrf4 4632435A09Rik|AV239010|Gpr115 - 17|17 B3 adhesion G protein-coupled receptor F4 protein-coding 545555 Gm5853 EG545555 - 3|3 F2.2 predicted gene 5853 pseudo 109280075 LOC109280075 Mm708 - - VISTA enhancer mm708 biological-region 105245799 XR_874756 Gm41190 - - 14 D1|14 predicted gene, 41190 ncRNA 102635707 XR_866463 2600014E21Rik Gm13659|Gm38714 - 2|2 C3 RIKEN cDNA 2600014E21 gene protein-coding 107221 Mm.35288 NM_181748 ENSMUSG00000054200 Ffar4 AI552415|Ffa4|GT01|Gpr120|Gpr129|KPG_013|O3far1|Pgr4 - 19|19 C2 free fatty acid receptor 4 protein-coding 544908 LOC544908 - - 12|12 F2 immunoglobulin heavy chain-like other 20660 Mm.121920 NM_011436 ENSMUSG00000049313 Sorl1 2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA - 9|9 A5.1 sortilin-related receptor, LDLR class A repeats-containing protein-coding 102640005 XR_382325 Gm36183 - - 13 A5|13 predicted gene, 36183 ncRNA 102631776 Gm30027 - - 1|1 predicted gene, 30027 ncRNA 107723 Mm.491155 NM_133648 ENSMUSG00000027130 Slc12a6 9530023I19Rik|KCC3|gaxp - 2|2 E3 solute carrier family 12, member 6 protein-coding 320166 A430042E23Rik - - 16|16 RIKEN cDNA A430042E23 gene protein-coding 100416811 Gm18270 - - 17|17 A3.3 zinc finger protein 760 pseudogene pseudo 61498 D7Mit210 - - 7 17.26 cM DNA segment, Chr 7, Massachusetts Institute of Technology 210 unknown 258525 Mm.377552 NM_146532 ENSMUSG00000075133 Olfr1170 MOR174-12 - 2|2 D olfactory receptor 1170 protein-coding 111296 Smt3h2-ps EG236622|Gm4905|Sfc5 - X A1.1|X 3.49 cM SMT3 suppressor of mif two 3 homolog 2, pseudogene (S. cerevisiae) pseudo 108168402 XR_001782550 Gm46642 - - 18 B3|18 predicted gene, 46642 ncRNA 104175 Mm.29660 NM_145587 ENSMUSG00000042978 Sbk1 Sbk - 7|7 F3 SH3-binding kinase 1 protein-coding 102633330 Mm.421293 Gm31181 - - 10|10 predicted gene, 31181 ncRNA 102631592 XR_387114 Gm15230 - - X F5|X 78.17 cM predicted gene 15230 ncRNA 102638428 XR_378449 Gm34999 - - 7 F1|7 predicted gene, 34999 ncRNA 628030 Gm6828 EG628030 - 7|7 A1 ARP2 actin-related protein 2 homolog pseudogene pseudo 102638262 Gm34866 - - 3|3 predicted gene, 34866 ncRNA 70992 Mm.399385 4931407E12Rik - - 14|14 RIKEN cDNA 4931407E12 gene protein-coding 100504727 Mm.440755 XR_386557 BE692007 - - 19 A|19 8.44 cM expressed sequence BE692007 unknown 66588 Mm.294159 NM_025647 ENSMUSG00000028719 Cmpk1 0610011D08Rik|CK|Cmpk|UMP-CMPk - 4|4 D1 cytidine monophosphate (UMP-CMP) kinase 1 protein-coding 100034949 Si5lq6 - - 11 51.23 cM serum IGFBP-5 level QTL 6 unknown 105246388 Gm26533 - - 18|18 predicted gene, 26533 ncRNA 100035169 Igan4 - - 12 60.56 cM IgA nephropathy 4 unknown 105245711 Gm41119 - - 14|14 predicted gene, 41119 ncRNA 19229 Mm.21613 NM_172498 ENSMUSG00000059456 Ptk2b CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk - 14 D1|14 34.36 cM PTK2 protein tyrosine kinase 2 beta protein-coding 108167393 LOC108167393 - - - killer cell lectin-like receptor 4 pseudo 77988 D730047N16Rik - - 6|6 RIKEN cDNA D730047N16 gene protein-coding 11761 Mm.26787 NM_009676 ENSMUSG00000063558 Aox1 AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro - 1 C1.3|1 28.86 cM aldehyde oxidase 1 protein-coding 105244505 XR_867483 Gm40100 - - 3 F2.1|3 predicted gene, 40100 ncRNA 52650 D15Ertd492e - - 15 46.07 cM DNA segment, Chr 15, ERATO Doi 492, expressed unknown 102634114 XR_383261 Gm31775 - - 14 A3|14 predicted gene, 31775 ncRNA 21991 Mm.4222 NM_009415 ENSMUSG00000023456 Tpi1 AI255506|TIM|Tpi|Tpi-1 - 6 F2|6 59.17 cM triosephosphate isomerase 1 protein-coding 11797 Mm.335659 NM_007465 ENSMUSG00000057367 Birc2 AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1 - 9|9 A1 baculoviral IAP repeat-containing 2 protein-coding 105246008 XR_875535 Gm15722 - - 15 E2|15 40.5 cM predicted gene 15722 ncRNA 723960 NR_029741 ENSMUSG00000065541 Mir24-2 Mirn24-2|mir-24-2 - 8|8 C2 microRNA 24-2 ncRNA 791274 AY512949 - - - cDNA sequence AY512949 unknown 243900 Mm.212921 NM_172897 4930432E11Rik - - 7|7 B1 RIKEN cDNA 4930432E11 gene unknown 434788 Gm5638 EG434788 - X|X A7.1 S-adenosylhomocysteine hydrolase pseudogene pseudo 78329 Mm.389940 NR_046006 ENSMUSG00000097162 2310010J17Rik - - 7|7 D3 RIKEN cDNA 2310010J17 gene ncRNA 11603 Mm.273098 NM_021604 ENSMUSG00000041936 Agrn Agrin|nmf380 - 4 E2|4 88.55 cM agrin protein-coding 668554 Gm9238 EG668554 - 12 F2|12 transcription elongation factor B (SIII), polypeptide 2 pseudogene pseudo 100039184 Mm.210427 XR_377539 Gm13861 - - 6|6 B1 predicted gene 13861 ncRNA 621740 Mm.343377 NR_002886 B020010K11Rik - - 18 E3|18 RIKEN cDNA B020010K11 gene unknown 81010 Mm.379267 NM_030735 ENSMUSG00000035523 Vmn1r172 V1rd9|V3R9 - 7|7 A3 vomeronasal 1 receptor 172 protein-coding 67532 Mm.440764 NM_026220 ENSMUSG00000068479 Mfap1a 4432409M24Rik|Mfap1 - 2|2 E5 microfibrillar-associated protein 1A protein-coding 19714 Mm.439723 NM_011264 ENSMUSG00000019841 Rev3l Rev|Rev3|Sez4 - 10|10 B1 REV3 like, DNA directed polymerase zeta catalytic subunit protein-coding 102636422 Gm21826 - - Y|Y predicted gene, 21826 protein-coding 217431 Mm.27536 NM_001008421 ENSMUSG00000061458 Nol10 Gm67 - 12|12 A1.1 nucleolar protein 10 protein-coding 85053 D1Mit20 - - 1 11.77 cM DNA segment, Chr 1, Massachusetts Institute of Technology 20 unknown 102632318 XR_381048 Gm30423 - - 11 A1|11 predicted gene, 30423 ncRNA 100038351 Mm.491155 Gm10792 - - - predicted gene 10792 unknown 72753 Mm.452125 NR_040562 ENSMUSG00000090260 2810442N19Rik - - 1|1 H2.1 RIKEN cDNA 2810442N19 gene ncRNA 70967 Mm.253077 NM_027627 ENSMUSG00000039903 Eva1c 1700092M14Rik|4931408A02Rik|Fam176c - 16|16 C3.3 eva-1 homolog C (C. elegans) protein-coding 241769 Mm.295337 NM_001030292 ENSMUSG00000035238 Kcnk15 KCNK11|KCNK14|KT3.3|TASK5 - 2|2 H3 potassium channel, subfamily K, member 15 protein-coding 102632934 XR_379339 Gm30883 - - 9 A5.2|9 predicted gene, 30883 ncRNA 107948 Defa-rs5 CRS4C-1b|Defcr-rs5 - - defensin, alpha, related sequence 5 protein-coding 15970 Mm.377091 NM_008334 ENSMUSG00000100713 Ifna7 Ifa7 - 4 C4|4 42.03 cM interferon alpha 7 protein-coding 101955 AA516637 - - - expressed sequence AA516637 unknown 66222 Mm.20144 NM_025429 ENSMUSG00000044734 Serpinb1a 1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2 - 13 A3.2|13 13.75 cM serine (or cysteine) peptidase inhibitor, clade B, member 1a protein-coding 109280001 LOC109280001 Mm901 - - VISTA enhancer mm901 biological-region 111576 Xmv55 Xmv-55 - - xenotropic murine leukemia virus 55 other 102465606 NR_105969 ENSMUSG00000098686 Mir6973b Gm27815|mmu-mir-6973b - 2|2 F1 microRNA 6973b ncRNA 74084 Mm.415011 4933408A14Rik - - 5|5 RIKEN cDNA 4933408A14 gene protein-coding 102640274 Mm.491695 Gm36385 - - 11|11 predicted gene, 36385 ncRNA 217843 Mm.387073 NM_177621 ENSMUSG00000021198 Unc79 9030205A07Rik|Mlca3 - 12|12 E unc-79 homolog (C. elegans) protein-coding 100418382 Gm19172 - - 6|6 B2.3 amiloride binding protein 1 (amine oxidase, copper-containing) pseudogene pseudo 217653 Mm.21144 NM_172578 ENSMUSG00000047534 Mis18bp1 6720403H11|C79407|Knl2|mKIAA1903 - 12|12 C1 MIS18 binding protein 1 protein-coding 105246101 Gm41444 - - 16|16 predicted gene, 41444 ncRNA 105244542 XR_867598 Gm40135 - - 3 G1|3 predicted gene, 40135 ncRNA 108168845 XR_001783635 Gm46793 - - 2 H4|2 predicted gene, 46793 ncRNA 637021 Mm.491827 NM_001271883 ENSMUSG00000094396 Vmn2r124 EG637021|Gm7196|Vmn2r-ps113 - 17|17 A3.2 vomeronasal 2, receptor 124 protein-coding 75655 Mm.396203 NR_040509 ENSMUSG00000086823 1700028P15Rik - - 2|2 H3 RIKEN cDNA 1700028P15 gene ncRNA 666237 Gm7997 EG666237 - 8|8 C2 lactate dehydrogenase A pseudogene pseudo 102636063 Gm21873 - - Y|Y predicted gene, 21873 protein-coding 235534 Mm.233031 NM_153420 ENSMUSG00000043587 Pxylp1 9430094M07Rik|Acpl2|BB177120|C130099A20Rik - 9|9 E3.3 2-phosphoxylose phosphatase 1 protein-coding 231474 Mm.332505 NM_198422 ENSMUSG00000055725 Paqr3 6330415A20Rik|AY424292|RKTG - 5|5 E3 progestin and adipoQ receptor family member III protein-coding 105243850 XR_872253 Gm39583 - - 11 A2|11 predicted gene, 39583 ncRNA 232370 Mm.193701 NM_153508 ENSMUSG00000008153 Clstn3 CSTN3|Cs3|Cst-3|alc-beta - 6|6 F2 calsyntenin 3 protein-coding 102632230 XR_383623 Gm30365 - - 14 D3|14 predicted gene, 30365 ncRNA 108168184 LOC108168184 - - 14 D1 60S ribosomal protein L38 pseudogene pseudo 100042937 Gm4116 - - 16 A1|16 predicted gene 4116 pseudo 107701 Mm.219671 NM_153053 ENSMUSG00000068856 Sf3b4 SF3b49|SF3b50|Sap49 - 3|3 F2.1 splicing factor 3b, subunit 4 protein-coding 54140 Mm.4351 NM_016847 ENSMUSG00000020123 Avpr1a AVPR|Avpr1|V1a|V1aR - 10|10 D2 arginine vasopressin receptor 1A protein-coding 108167673 LOC108167673 - - 9 E3.1 transcription elongation factor B polypeptide 1 pseudogene pseudo 102643247 Mm.441001 XR_867954 BC062258 - - 4|4 C6 cDNA sequence BC062258 ncRNA 102633282 Gm31144 - - 10|10 predicted gene, 31144 ncRNA 100124487 NR_030571 ENSMUSG00000077049 Mir467c Mirn467c|mir-467c - 2 A1|2 microRNA 467c ncRNA 103510 D10Mgi24 BB131012 - - DNA Segment, Chr 10, Mouse Genome Informatics 24 unknown 320550 Mm.446015 5930405F01Rik - - 18|18 RIKEN cDNA 5930405F01 gene protein-coding 58193 Mm.41739 NM_021388 ENSMUSG00000027963 Extl2 3000001D04Rik|AW146439 - 3|3 G1 exostoses (multiple)-like 2 protein-coding 19447 Rb(1.3)1Bnr Rb1Bnr - - Robertsonian translocation, Chr 1 and 3, Universitat Bonn/Rhein 1 other 105246616 XR_877979 Gm41883 - - 19 D3|19 predicted gene, 41883 ncRNA 319160 Mm.255646 NM_178211 ENSMUSG00000064288 Hist1h4k - - 13|13 A3.1 histone cluster 1, H4k protein-coding 434174 NM_001111282 Hmgb1-ps7 EG434174|Hmg1l1 - 7|7 B3 high-mobility group high mobility group box 1, pseudogene 7 pseudo 666923 Gm8366 EG666923 - X F3|X lysyl-tRNA synthetase pseudogene pseudo 69994 Mm.441022 NM_023544 ENSMUSG00000040715 Rsc1a1 1700027M01Rik|Rs1 - 4|4 E1 regulatory solute carrier protein, family 1, member 1 protein-coding 100416266 Gm18008 - - 6|6 F1 ribosomal protein S3 pseudogene pseudo 67653 Mm.389756 NM_001161773 ENSMUSG00000036463 4930544G11Rik - - 6|6 C1 RIKEN cDNA 4930544G11 gene protein-coding 102639435 Gm35749 - - 18|18 predicted gene, 35749 ncRNA 100034768 Tcsz2 QTL-CS7.2 - - tooth central size 2 unknown 52705 Mm.34606 NM_178610 ENSMUSG00000063334 Krr1 2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2 - 10 D2|10 59.97 cM KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 104053955 Rhox11-ps1 Gm15474 - X A3.3|X 22.18 cM reproductive homeobox 11, pseudogene 1 pseudo 665782 Gm7784 EG665782 - 1|1 A5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 331416 Mm.387260 NM_001033423 ENSMUSG00000073177 Gm773 - - X|X A6 predicted gene 773 protein-coding 667891 Gm8864 EG667891 - X|X C1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 78131 Mm.243813 4930433E05Rik - - 14|14 RIKEN cDNA 4930433E05 gene protein-coding 50873 Mm.311110 NM_016694 ENSMUSG00000023826 Park2 PRKN - 17 A1|17 7.8 cM Parkinson disease (autosomal recessive, juvenile) 2, parkin protein-coding 379043 Mm.439724 NM_198193 ENSMUSG00000053219 Raet1e - - 10|10 A3 retinoic acid early transcript 1E protein-coding 105005 Mm.227253 NM_029007 ENSMUSG00000020607 Fam84a 2310003N02Rik|4731402F03Rik|AW125753|Nse1 - 12|12 A1.1 family with sequence similarity 84, member A protein-coding 435743 Aqp10-ps AQP10p|EG668102|Gm8977 - 3|3 F1 aquaporin 10, pseudogene pseudo 16700 Mm.6973 NM_010672 ENSMUSG00000058172 Krtap6-1 HGTpII.1|HGTpII.2 - 16|16 C3.3 keratin associated protein 6-1 protein-coding 53311 Mm.379067 NM_016749 ENSMUSG00000042451 Mybph AI385643|MyBP-H - 1|1 E4 myosin binding protein H protein-coding 105244492 XR_867446 Gm40089 - - 3 F1|3 predicted gene, 40089 ncRNA 75198 4930544F09Rik - - 15|15 RIKEN cDNA 4930544F09 gene protein-coding 14719 Mm.230169 NM_010325 ENSMUSG00000031672 Got2 AL022787|FABP-pm|Got-2|Kyat4|mAspAT - 8 D1|8 47.79 cM glutamatic-oxaloacetic transaminase 2, mitochondrial protein-coding 381077 Mm.328867 NM_001165929 ENSMUSG00000071202 Ccdc78 Gm938|Gm950 - 17|17 A3.3 coiled-coil domain containing 78 protein-coding 105246582 XR_877874 Gm41853 - - 19 C3|19 predicted gene, 41853 ncRNA 100034877 Hbnr6 Hpnr6 - - Heligmosomoides bakeri nematode resistance 6 unknown 105245956 XR_875352 Gm41328 - - 15 D1|15 predicted gene, 41328 ncRNA 100043176 XR_383590 Gm15628 - - 14 D3|14 predicted gene 15628 ncRNA 110557 Mm.439827 NM_207648 ENSMUSG00000073409 H2-Q6 0610037M15Rik|H-2Q6|Qa-6|Qa6 - 17 B1|17 18.66 cM histocompatibility 2, Q region locus 6 protein-coding 100043151 Gm13204 - - 4|4 E2 predicted gene 13204 pseudo 21049 T(10;17)11Rl T11Rl - - reciprocal translocation, Chr 10 and 17, Russell 11 other 102631958 XR_383734 Gm30157 - - 14 E3|14 predicted gene, 30157 ncRNA 258530 Mm.377556 NM_146537 ENSMUSG00000094805 Olfr311 MOR222-1 - 11|11 B1.3 olfactory receptor 311 protein-coding 73479 1700082C01Rik - - 2|2 RIKEN cDNA 1700082C01 gene protein-coding 16260 In(17)3t In3 - - inversion, Chr 17 other 66810 Mm.275106 NM_025776 ENSMUSG00000024604 Rbm22 8430430L24Rik - 18|18 D3 RNA binding motif protein 22 protein-coding 102640437 LOC102640437 - - 12 C1 mitochondrial import inner membrane translocase subunit Tim8 B pseudogene pseudo 61538 D9Mit115 - - 9 53.48 cM DNA segment, Chr 9, Massachusetts Institute of Technology 115 unknown 320438 Mm.32408 NM_001081264 ENSMUSG00000073792 Alg6 E230028F23Rik - 4|4 C6 asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase) protein-coding 258603 Mm.271456 NM_146610 ENSMUSG00000094449 Olfr972 MOR171-17 - 9|9 A5.1 olfactory receptor 972 protein-coding 258814 Mm.377703 NM_146817 ENSMUSG00000075144 Olfr1156 MOR174-3 - 2|2 D olfactory receptor 1156 protein-coding 100417268 Gm18493 - - 3|3 A3 BRCA1 associated RING domain 1 pseudogene pseudo 17131 Mm.34407 NM_008543 ENSMUSG00000025880 Smad7 Madh7 - 18|18 E3 SMAD family member 7 protein-coding 105246377 XR_877200 Gm41673 - - 18 A1|18 predicted gene, 41673 ncRNA 27691 D11Moh16 - - - DNA segment, Chr 11, KL Mohlke 16 unknown 232236 Mm.234879 NM_172730 ENSMUSG00000034083 Ccdc174 C130022K22Rik - 6|6 D1 coiled-coil domain containing 174 protein-coding 100035263 Pltq3 - - - platelet quantitative locus 3 unknown 52166 D3Ertd302e - - - DNA segment, Chr 3, ERATO Doi 302, expressed unknown 67144 Mm.358704 NM_024194 ENSMUSG00000063052 Lrrc40 2610040E16Rik|AI837674 - 3|3 H4 leucine rich repeat containing 40 protein-coding 100124625 NR_037254 ENSMUSG00000096492 Mir467a-4 Mirn467a-4|mmu-mir-467a-4 - 2 A1|2 microRNA 467a-4 ncRNA 108167719 XR_001779361 Gm46152 - - 9 A2|9 predicted gene, 46152 ncRNA 102638857 XR_867139 Gm35319 - - 2 H4|2 predicted gene, 35319 ncRNA 12563 Mm.57048 NM_007666 ENSMUSG00000039385 Cdh6 cad6 - 15|15 A1 cadherin 6 protein-coding 100862348 XM_011243951 Gm9295 EG668669 - 12|12 A1.3 predicted gene 9295 protein-coding 66785 Mm.158134 NR_105026 ENSMUSG00000111807 4933433G08Rik - - 9|9 B RIKEN cDNA 4933433G08 gene ncRNA 105245778 Gm41174 - - 14|14 predicted gene, 41174 ncRNA 100043643 Gm15503 - - 7 F3|7 predicted gene 15503 protein-coding 62238 D17Mit66 - - 17 23.97 cM DNA segment, Chr 17, Massachusetts Institute of Technology 66 unknown 382131 XM_011251039 ENSMUSG00000095950 Gm20737 - - Y|Y A1 predicted gene, 20737 protein-coding 242819 Mm.332192 NM_198620 ENSMUSG00000040570 Rundc3b Gm440 - 5|5 A1 RUN domain containing 3B protein-coding 100340 Mm.287187 NM_133888 ENSMUSG00000028885 Smpdl3b 1110054A24Rik|AU045240|Asml3b - 4|4 D2.3 sphingomyelin phosphodiesterase, acid-like 3B protein-coding 110120523 LOC110120523 - - - VISTA enhancer mm1444 biological-region 100038968 Gm1989 - - X A2|X predicted gene 1989 pseudo 73619 Mm.71182 XR_106144 1700122E12Rik - - 8|8 C2 RIKEN cDNA 1700122E12 gene ncRNA 633061 Gm13313 - - 2|2 A2 peptidylprolyl isomerase D (cyclophilin D) pseudogene pseudo 435286 Mm.457964 NM_001085527 ENSMUSG00000078255 Krtap9-5 - - 11|11 D keratin associated protein 9-5 protein-coding 85203 D17Mit245 - - 17 8.29 cM DNA segment, Chr 17, Massachusetts Institute of Technology 245 unknown 638338 Obox4-ps35 EG638338|Gm7235 - 7|7 A2 oocyte specific homeobox 4, pseudogene 35 protein-coding 320923 Mm.186745 NM_177293 ENSMUSG00000067878 Map7d3 4933424A10Rik|Mtap7d3 - X|X A6 MAP7 domain containing 3 protein-coding 68634 Mm.476828 NM_026795 ENSMUSG00000078681 Tm2d3 1110025I09Rik|5930422O05Rik|Blp2 - 7|7 C TM2 domain containing 3 protein-coding 108511959 Hipk2r16 - - 6 B Hipk2R16 erythroid cis-regulatory module biological-region 56488 Mm.34663 NM_019761 ENSMUSG00000036992 Nxt1 1110001N02Rik - 2|2 G3 NTF2-related export protein 1 protein-coding 442823 A230085B16Rik - - 8|8 B1.3 RIKEN cDNA A230085B16 gene unknown 14464 Mm.388880 NM_008093 ENSMUSG00000015627 Gata5 - - 2 H4|2 102.85 cM GATA binding protein 5 protein-coding 75530 Mm.83578 NM_029327 ENSMUSG00000020268 Lyrm7 1700024C24Rik|9330147L21Rik - 11|11 B1.3 LYR motif containing 7 protein-coding 102631862 XR_373838 Gm30088 - - 1 H6|1 predicted gene, 30088 ncRNA 20720 Mm.3093 NM_009255 ENSMUSG00000026249 Serpine2 B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4 - 1 C4|1 40.97 cM serine (or cysteine) peptidase inhibitor, clade E, member 2 protein-coding 100093639 Trnal-gag - - - transfer RNA leucine (anticodon GAG) tRNA 17281 Mm.252941 NM_148925 ENSMUSG00000025241 Fyco1 2810409M01Rik|Mem2|RUFY3|ZFYVE7 - 9 F4|9 74.52 cM FYVE and coiled-coil domain containing 1 protein-coding 108168167 XR_001781290 Gm46458 - - 14 D1|14 predicted gene, 46458 ncRNA 17476 Mm.3999 NM_010821 ENSMUSG00000046805 Mpeg1 MPS1|Mpg-1 - 19|19 A macrophage expressed gene 1 protein-coding 100417427 Gm18607 - - 4|4 A5 cell division cycle associated 3 pseudogene pseudo 114868 Mm.389809 NM_054060 ENSMUSG00000070798 Psg25 cea13 - 7|7 A3 pregnancy-specific glycoprotein 25 protein-coding 102639067 XR_389210 Gm38514 - - 11 E2|11 predicted gene, 38514 ncRNA 100416036 Gm17883 - - 18|18 E1 predicted gene, 17883 pseudo 239217 Mm.246466 NM_177715 ENSMUSG00000098557 Kctd12 AU046135|AW538430|Pfet1|Pfetin - 14|14 E2.3 potassium channel tetramerisation domain containing 12 protein-coding 102633265 Gm31132 - - 14|14 predicted gene, 31132 ncRNA 102640415 Mm.394352 NR_155426 ENSMUSG00000116204 Gm36480 - - 15 E3|15 predicted gene, 36480 ncRNA 50782 Mm.109840 NM_001081069 ENSMUSG00000024186 Rgs11 C78048 - 17|17 A3.3 regulator of G-protein signaling 11 protein-coding 72267 Mm.25479 NM_028175 ENSMUSG00000046589 Lrrc8e 1810049O03Rik|C87354 - 8|8 A1.1 leucine rich repeat containing 8 family, member E protein-coding 100415947 Gm14021 - - 2|2 E5 septin 2 pseudogene pseudo 73338 Mm.57559 NM_001163527 ENSMUSG00000074825 Itpripl1 1700041B20Rik - 2 F1|2 61.79 cM inositol 1,4,5-triphosphate receptor interacting protein-like 1 protein-coding 100417594 Gm15900 - - 10|10 D3 ecotropic viral integration site 5 pseudogene pseudo 79221 Mm.310551 NM_024124 ENSMUSG00000004698 Hdac9 AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744 - 12|12 A3 histone deacetylase 9 protein-coding 100862005 Gm21393 - - Y A1|Y predicted gene, 21393 pseudo 100125853 Tbqt6 - - - tibia bone quality traits 6 unknown 360080 D17Jcs15 - - - DNA segment, Chr 17, John C. Schimenti 15 unknown 73250 Mm.244138 NM_028480 ENSMUSG00000008789 Ceacam5 1600029H12Rik|Psg30 - 7|7 A2 carcinoembryonic antigen-related cell adhesion molecule 5 protein-coding 22044 Mm.1363 NM_009426 ENSMUSG00000005892 Trh Pro-TRH|Trf - 6 D1|6 41.03 cM thyrotropin releasing hormone protein-coding 110215 Mml1 - - - MuLV-induced myeloid leukemia 1 protein-coding 100502597 Mm.234367 XR_377324 Gm19272 - - 6 A1|6 2.89 cM predicted gene, 19272 unknown 105243808 XR_872232 Gm39572 - - 11 A1|11 predicted gene, 39572 ncRNA 665068 Gm7473 EG665068 - 14|14 A3 predicted gene 7473 pseudo 102633392 XR_383535 Gm31227 - - 14 D1|14 predicted gene, 31227 ncRNA 100036239 Eae31 - - - experimental allergic encephalomyelitis susceptibility 31 unknown 105243910 LOC105243910 - - 1 B mitochondrial pyruvate carrier 1 pseudogene pseudo 259097 Mm.121813 NM_147093 ENSMUSG00000070423 Olfr558 MOR18-1|POGR - 7|7 E3 olfactory receptor 558 protein-coding 12366 Mm.3921 NM_007610 ENSMUSG00000029863 Casp2 CASP-2|ICH-1|NEDD-2|Nedd2 - 6 B2.1|6 20.54 cM caspase 2 protein-coding 18160 Mm.4627 NM_008727 ENSMUSG00000027931 Npr1 AI893888|GC-A|NPR-A|NPRA|Pndr - 3 F1|3 39.23 cM natriuretic peptide receptor 1 protein-coding 360120 D17Jcs107 - - - DNA segment, Chr 17, John C. Schimenti 107 unknown 116943 Naad1 - - - Neu associated allelic deletion 1 other 74965 4930465C05Rik - - - RIKEN cDNA 4930465C05 gene protein-coding 105242573 XR_868696 Gm38747 - - 5 G3|5 predicted gene, 38747 ncRNA 21202 T(5;11)57H T57H - - reciprocal translocation, Chr 5 and 11, Harwell 57 other 105242873 XR_880184 Gm38961 - - 11 D|11 predicted gene, 38961 ncRNA 626785 Gm6705 EG626785 - 17|17 A3.1 predicted gene 6705 pseudo 52744 D7Wsu41e - - - DNA segment, Chr 7, Wayne State University 41, expressed unknown 52850 Mm.200203 NM_172718 ENSMUSG00000042216 Sgsm1 2410098H20Rik|AA408781|D5Bwg1524e|E130107M15|NuIP|Rutbc2 - 5 F|5 55.45 cM small G protein signaling modulator 1 protein-coding 102631520 XR_376485 Gm29838 - - 4 C6|4 predicted gene, 29838 ncRNA 382233 Mm.336195 NR_027707 Gm5166 EG382233 - X|X D DMRT-like family pseudogene pseudo 70972 Mm.399391 NR_040561 4931420L22Rik - - 16|16 C3.1 RIKEN cDNA 4931420L22 gene ncRNA 68992 Mm.41484 NM_026900 ENSMUSG00000055633 Zfp580 1500015O20Rik|AI838225|Znf580 - 7|7 A1 zinc finger protein 580 protein-coding 76221 6430598H11Rik - - 4|4 RIKEN cDNA 6430598H11 gene protein-coding 100041098 Tma7-ps Gm15431 - 1|1 H3 translational machinery associated 7 homolog (S. cerevisiae), pseudogene protein-coding 629499 Mm.384235 NM_001039557 ENSMUSG00000074627 Mroh8 4922505G16Rik - 2|2 H1 maestro heat-like repeat family member 8 protein-coding 62092 D11Mit11 - - 11 75.67 cM DNA segment, Chr 11, Massachusetts Institute of Technology 11 unknown 100417028 Gm18371 - - 18|18 B3 cyclin-dependent kinase 1 pseudogene pseudo 259008 Mm.223395 NM_147006 ENSMUSG00000061984 Olfr392 MOR135-9 - 11|11 B4 olfactory receptor 392 protein-coding 100040294 Mm.213632 NR_033430 ENSMUSG00000097248 Gm2694 C230036H16Rik|linc1582 - 8 C3|8 predicted gene 2694 ncRNA 667682 Rpl31-ps8 EG667682|Gm8759 - 15|15 E3 ribosomal protein L31, pseudogene 8 pseudo 19298 Mm.247764 NM_023041 ENSMUSG00000003464 Pex19 Pxf - 1 H3|1 79.54 cM peroxisomal biogenesis factor 19 protein-coding 13180 Mm.39473 NM_025273 ENSMUSG00000020098 Pcbd1 Dcoh|Pcbd|Pcd|Phs - 10 B4|10 32.14 cM pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 protein-coding 62843 D12Mit221 - - 12 15.9 cM DNA segment, Chr 12, Massachusetts Institute of Technology 221 unknown 102465220 NR_105834 ENSMUSG00000098730 Mir6407 Gm27832|mmu-mir-6407 - 19|19 D2 microRNA 6407 ncRNA 668052 Gm8949 - - 4|4 C4 ribosomal protein L7A pseudogene pseudo 100043675 Gm10233 - - 14|14 D1 translocase of inner mitochondrial membrane 23 homolog pseudogene pseudo 73493 Mm.383775 1700072H12Rik - - 11|11 RIKEN cDNA 1700072H12 gene unknown 20744 Mm.237095 NM_009261 ENSMUSG00000026915 Strbp 6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr - 2|2 B spermatid perinuclear RNA binding protein protein-coding 67890 Mm.23067 NM_026435 ENSMUSG00000027746 Ufm1 1810045K17Rik|AI132708|AI463323|Gm10726 - 3|3 C ubiquitin-fold modifier 1 protein-coding 100416310 Gm18028 - - 12|12 A1.1 predicted gene, 18028 pseudo 104701 BB143651 - - - expressed sequence BB143651 unknown 104416 Mm.3779 NM_027088 ENSMUSG00000021901 Bap1 2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4 - 14|14 B Brca1 associated protein 1 protein-coding 74475 Mm.423978 XR_001778587 4933431K23Rik - - 8|8 C1 RIKEN cDNA 4933431K23 gene ncRNA 108168074 XR_001780888 Gm46407 - - 13 A3.3|13 predicted gene, 46407 ncRNA 100036181 Fatmq1 Fatq1 - - total fat pad mass QTL 1 unknown 23809 B160F9S - - - DNA segment B160-F-9-S unknown 94112 Mm.208970 NM_033609 ENSMUSG00000012114 Med15 A230074L19Rik|AW536074|Pcqap|mPcqap - 16 A3|16 10.94 cM mediator complex subunit 15 protein-coding 102632447 XR_391693 ENSMUSG00000100984 Gm28357 - - Y A1|Y predicted gene 28357 ncRNA 17235 Mm.331192 NM_008574 Smcp Mcs|Mcsp - 3|3 F1 sperm mitochondria-associated cysteine-rich protein protein-coding 100416246 Gm18000 - - 8|8 C2 ribosomal protein S2 pseudogene pseudo 20854 stb - - - stubby unknown 100036376 Mpcp7 - - - myeloid progenitor cell proliferation 7 unknown 238939 Mm.425847 XM_011244864 ENSMUSG00000084902 Gm281 - - 14|14 A1 predicted gene 281 protein-coding 668995 Rpl36-ps10 EG668995|Gm9437 - X|X A1.3 ribosomal protein L36, pseudogene 10 pseudo 108168536 XR_001782917 LOC108168536 - - Y C2 uncharacterized LOC108168536 ncRNA 57775 Mm.40752 NM_021323 ENSMUSG00000051527 Usp29 Ocat - 7 A1|7 4.04 cM ubiquitin specific peptidase 29 protein-coding 213391 Mm.257931 NM_178045 ENSMUSG00000042129 Rassf4 3830411C14Rik|AD037|AI586137 - 6|6 E3 Ras association (RalGDS/AF-6) domain family member 4 protein-coding 71943 Mm.167868 NM_028011 ENSMUSG00000020541 Tom1l1 2310045L10Rik|C80573|Srcasm - 11 D|11 55.47 cM target of myb1-like 1 (chicken) protein-coding 19090 Mm.71 NM_011159 ENSMUSG00000022672 Prkdc AI326420|AU019811|DNA-PKcs|DNAPDcs|DNAPK|DNPK1|DOXNPH|HYRC1|XRCC7|dxnph|p460|scid|slip - 16 10.09 cM|16 A2 protein kinase, DNA activated, catalytic polypeptide protein-coding 74607 4833412K13Rik - - 1|1 RIKEN cDNA 4833412K13 gene protein-coding 105244337 Gm39967 - - 2|2 predicted gene, 39967 ncRNA 329877 Mm.273718 NM_184088 ENSMUSG00000038024 Dennd4c 1700065A05Rik|AA420392 - 4|4 C4 DENN/MADD domain containing 4C protein-coding 622629 Mm.426393 NM_001162944 ENSMUSG00000071195 Gm10318 EG622629 - 10 C1|10 predicted gene 10318 protein-coding 105245461 XR_873230 Gm40910 - - 13 A3.3|13 predicted gene, 40910 ncRNA 319457 Mm.380649 C130045F17Rik - - 11|11 RIKEN cDNA C130045F17 gene protein-coding 11429 Mm.154581 NM_080633 ENSMUSG00000022477 Aco2 Aco-2|Aco3|D10Wsu183e - 15|15 E1 aconitase 2, mitochondrial protein-coding 100040708 NM_001111335 Atp5l2-ps Atp5l2 - 11|11 D ATP synthase, H+ transporting, mitochondrial FO complex, subunit G2, pseudogene pseudo 353371 Mm.189660 NM_181859 ENSMUSG00000076438 Oxct2b Scot-t2 - 4|4 D2.2 3-oxoacid CoA transferase 2B protein-coding 105246895 XR_001780401 LOC105246895 - - 11 E2 uncharacterized LOC105246895 ncRNA 382543 Mm.60997 NM_172534 ENSMUSG00000047773 Ankfn1 4932411E22Rik|Gm1175|nmf9 - 11|11 C ankyrin-repeat and fibronectin type III domain containing 1 protein-coding 100416756 Gm18232 - - 3|3 A1 SCAN domain containing 3 pseudogene pseudo 97279 R74617 - - - expressed sequence R74617 unknown 381677 Mm.389697 NM_001039385 ENSMUSG00000037428 Vgf Gm1052 - 5 G2|5 76.13 cM VGF nerve growth factor inducible protein-coding 105245423 XR_001780513 Gm40880 - - 12 A1.2|12 predicted gene, 40880 ncRNA 102642625 XR_874231 Gm38620 - - 14 A2|14 predicted gene, 38620 ncRNA 212427 Mm.384762 NM_172505 A730008H23Rik Fleg1 - - RIKEN cDNA A730008H23 gene protein-coding 100417419 Gm18601 - - 13|13 D1 ubiquitin specific peptidase 38 pseudogene pseudo 108167604 LOC108167604 - - 1 E3 male-enhanced antigen 1 pseudogene pseudo 26940 Mm.425568 NM_012029 ENSMUSG00000066839 Ecsit Sitpec - 9|9 A3 ECSIT signalling integrator protein-coding 102635164 LOC102635164 - - 2 A2 NHP2-like protein 1 pseudogene pseudo 102637323 Gm29412 - - Y|Y predicted gene 29412 pseudo 622812 Gm6362 EG622812 - 10|10 B5.3 predicted gene 6362 pseudo 226841 Mm.22856 NM_144879 ENSMUSG00000037568 Vash2 B130052G07Rik - 1|1 H6 vasohibin 2 protein-coding 108167661 LOC108167661 - - 1 D DNA polymerase epsilon subunit 3 pseudogene pseudo 102634002 XR_378946 Gm31692 - - 8 B1.1|8 predicted gene, 31692 ncRNA 24070 Mm.89579 NM_011900 ENSMUSG00000018761 Mpdu1 LEC35|SL15|Supl15h - 11 B3|11 42.86 cM mannose-P-dolichol utilization defect 1 protein-coding 102634254 XR_872957 Gm31884 - - 12 E|12 predicted gene, 31884 ncRNA 54376 Mm.444212 NM_019430 ENSMUSG00000066189 Cacng3 - - 7|7 F2 calcium channel, voltage-dependent, gamma subunit 3 protein-coding 100417564 Gm15595 - - 6|6 A2 2'-5' oligoadenylate synthetase 1E pseudogene pseudo 66480 Mm.2050 NM_025586 ENSMUSG00000012405 Rpl15 2510008H07Rik - 14 A2|14 ribosomal protein L15 protein-coding 102639796 XR_383491 Gm36025 - - 14 D1|14 predicted gene, 36025 ncRNA 67369 Mm.234876 NM_026111 ENSMUSG00000030407 Qpctl 1810019P04Rik|BB101812|gQC - 7|7 A3 glutaminyl-peptide cyclotransferase-like protein-coding 109811 H42 H-42 - - histocompatibility 42 protein-coding 76454 Mm.24829 NM_133765 ENSMUSG00000052934 Fbxo31 1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14 - 8|8 E1 F-box protein 31 protein-coding 107690 Tse4 - - - tissue specific extinction 4, of PEPCK protein-coding 100124372 Traj17 Gm17010 - 14|14 C2 T cell receptor alpha joining 17 other 102634018 LOC102634018 - - 2 H1 protein kish-A pseudogene pseudo 102640555 XR_374179 Gm36591 - - 2 A3|2 predicted gene, 36591 ncRNA 12780 Mm.39054 NM_013806 ENSMUSG00000025194 Abcc2 AI173996|Abc30|Cmoat|Mrp2|cMRP - 19 C3|19 36.67 cM ATP-binding cassette, sub-family C (CFTR/MRP), member 2 protein-coding 72541 2700003L17Rik - - - RIKEN cDNA 2700003L17 gene protein-coding 102632354 XR_379919 Gm30448 - - 9 F3|9 predicted gene, 30448 ncRNA 107960 Hp1bp1 - - - heterochromatin protein 1, binding protein 1 protein-coding 100125977 Mm.472912 Gm10034 - - - predicted gene 10034 unknown 111146 Zfp77-rs1 - - - zinc finger protein 77, related sequence 1 pseudo 668411 Gm9156 EG668411 - 7|7 B1 predicted gene 9156 pseudo 108927 Mm.118617 NM_175386 ENSMUSG00000048332 Lhfp 2810489O06Rik|AI194968|Lhfpl6 - 3|3 C lipoma HMGIC fusion partner protein-coding 69923 Mm.32840 NM_023538 ENSMUSG00000029916 Agk 2610037M15Rik|6720408I04Rik|AI465370|Mulk - 6|6 B1 acylglycerol kinase protein-coding 75951 Mm.441657 NR_045991 ENSMUSG00000097587 4930578M01Rik 3010001K12Rik - 15|15 F1 RIKEN cDNA 4930578M01 gene ncRNA 433700 Mm.331569 NM_001007463 ENSMUSG00000066196 Spag8 MH-SPAG8|SMP-1 - 4|4 A5 sperm associated antigen 8 protein-coding 77633 Mm.483177 NR_024017 ENSMUSG00000103948 4930594C11Rik - - 1|1 B G1 to S phase transition pseudogene pseudo 100502648 Mm.388662 Gm19304 - - 9|9 38.07 cM predicted gene, 19304 unknown 100039763 XM_006528420 Gm2411 - - X E3|X predicted gene 2411 protein-coding 100036196 Ses4 - - - salmonella enteritidis susceptibility 4 unknown 666810 Gm13494 - - 2|2 C1.1 predicted gene 13494 pseudo 100312495 Vmn1r-ps36 - - 6|6 D1 vomeronasal 1 receptor, pseudogene 36 pseudo 102632975 XR_381762 Gm30916 - - 12 D1|12 predicted gene, 30916 ncRNA 102632492 Mm.383874 NR_136924 ENSMUSG00000114206 Gm30551 Gm30710 - 13 D1|13 predicted gene, 30551 ncRNA 73123 3110013M02Rik - - 17|17 RIKEN cDNA 3110013M02 gene protein-coding 100039405 Gm2213 - - 5 B1|5 protein phosphatase 1, regulatory subunit 10 pseudogene pseudo 73465 Mm.418063 XR_382360 1700048B10Rik - - 13 A5|13 RIKEN cDNA 1700048B10 gene ncRNA 100041294 Mm.7821 NM_011509 Supt4b Gm3258|Supt4h1b|Supt4h2 - 10 A4|10 17.4 cM suppressor of Ty 4B protein-coding 100418200 Gm14849 - - X|X D MYST histone acetyltransferase (monocytic leukemia) 3 pseudogene pseudo 108168446 XM_017318654 LOC108168446 - - X C2 melanoma-associated antigen B2-like protein-coding 100039300 Gm16373 EG385412 - X|X E1 enhancer of yellow 2 pseudogene pseudo 378431 Mm.283493 NM_138628 ENSMUSG00000039891 Txlnb 2310001N14Rik|Mdp77 - 10|10 A3 taxilin beta protein-coding 75073 Mm.399233 NR_130979 ENSMUSG00000109414 4930505K13Rik Gm44569 - 7|7 F2 RIKEN cDNA 4930505K13 gene ncRNA 100043876 XM_001481172 Gm4705 - - 17 E1.1|17 predicted gene 4705 pseudo 52679 Mm.11747 NM_178609 ENSMUSG00000020185 E2f7 A630014C11Rik|D10Ertd739e|E2F-7 - 10 D1|10 57.74 cM E2F transcription factor 7 protein-coding 100861673 Mm.415488 XR_140838 ENSMUSG00000109700 Gm21123 - - 7 E3|7 predicted gene, 21123 ncRNA 102640989 XR_387112 Gm36918 - - X F5|X predicted gene, 36918 ncRNA 664781 Gpx4-ps2 Gm7338 - 10 B2|10 glutathione peroxidase 4, pseudogene 2 pseudo 105242726 XR_869310 Gm38866 - - 6 D3|6 predicted gene, 38866 ncRNA 240028 Mm.328807 NM_172827 ENSMUSG00000023845 Lnpep 2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165 - 17|17 A3.2 leucyl/cystinyl aminopeptidase protein-coding 29830 Del(11)9Brd - - - deletion, Chr 11, Bradley 9 other 100036498 Miju - - - modifier of IgJ upregulation unknown 51867 D2Ertd210e - - 2 60.06 cM DNA segment, Chr 2, ERATO Doi 210, expressed unknown 102633307 XM_006531866 Gm31166 - - 19 A|19 predicted gene, 31166 protein-coding 112170 Daq4 - - 10 25.66 cM directional asymmetry QTL 4 unknown 628060 Gm14165 - - 2|2 G3 ribosomal protein, large, P0 pseudogene pseudo 213262 Mm.379337 NM_178673 ENSMUSG00000034098 Fstl5 9130207J01Rik - 3|3 E3 follistatin-like 5 protein-coding 76943 Mm.44242 NM_175249 ENSMUSG00000043430 Psapl1 2310020A21Rik - 5|5 B3 prosaposin-like 1 protein-coding 100416125 Gm14895 - - X|X E1 tubulin, alpha 1B pseudogene pseudo 108001 H2-T5l2 - - - histocompatibility 2, T region locus 5 like, 2 protein-coding 102638412 LOC102638412 - - 3 F2.2 uncharacterized protein C9orf85 homolog pseudogene pseudo 83409 Mm.41680 NM_031248 ENSMUSG00000028062 Lamtor2 2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3 - 3|3 F1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 protein-coding 225908 Mm.329716 NM_001033481 ENSMUSG00000036098 Myrf 6030439E18|Gm1804|Gm98|Mrf - 19|19 A myelin regulatory factor protein-coding 66789 Mm.269881 NM_024178 ENSMUSG00000039887 Alg14 5430428G01Rik|AI854024 - 3|3 G1 asparagine-linked glycosylation 14 protein-coding 104001 Mm.221275 NM_153457 ENSMUSG00000021087 Rtn1 Nsp - 12|12 C3 reticulon 1 protein-coding 102640382 Gm36453 - - 8 B1.3|8 predicted gene, 36453 pseudo 24068 Mm.29058 NM_025291 ENSMUSG00000006050 Sra1 AA959952|Sra|Srap|Straa1|Strra1 - 18|18 B2 steroid receptor RNA activator 1 protein-coding 11736 Mm.10313 NM_009671 ENSMUSG00000020790 Ankfy1 Ankhzn|ZFYVE14|mKIAA1255 - 11|11 B4 ankyrin repeat and FYVE domain containing 1 protein-coding 105246061 Gm41412 - - 16|16 predicted gene, 41412 ncRNA 116853 Prdt4 - - 12|12 55.45 cM prion disease incubation time 4 unknown 620772 Gm6180 EG620772 - 8|8 A4 cofilin 1, non-muscle pseudogene pseudo 114674 Mm.218744 NM_053266 ENSMUSG00000015942 Gtf2ird2 1700012P16Rik - 5|5 G2 GTF2I repeat domain containing 2 protein-coding 12034 Mm.36241 NM_007531 ENSMUSG00000004264 Phb2 AU044498|BAP|Bap37|Bcap37|REA - 6 F2|6 59.17 cM prohibitin 2 protein-coding 102634073 XR_382752 Gm31745 - - 13 C3|13 predicted gene, 31745 ncRNA 100035180 Ptnu5 - - 15 38.02 cM proteinuria 5 unknown 16185 Mm.35287 NM_008368 ENSMUSG00000068227 Il2rb CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70 - 15 E1|15 37.52 cM interleukin 2 receptor, beta chain protein-coding 98750 BB187771 - - - expressed sequence BB187771 unknown 258766 Mm.434166 NM_146770 ENSMUSG00000075160 Olfr259 MOR172-3 - 2|2 D olfactory receptor 259 protein-coding 100034661 Mm.477610 Gm12802 - - 4|4 50.06 cM predicted gene 12802 ncRNA 62194 D15Mit64 - - 15 29.03 cM DNA segment, Chr 15, Massachusetts Institute of Technology 64 unknown 100101633 Bwq8 Bwq7 - - body weight QTL 8 unknown 28273 D10Jhu67 - - - DNA segment, Chr 10, Johns Hopkins University 67 unknown 105247047 Gm42224 - - 5|5 predicted gene, 42224 ncRNA 78902 4833447P13Rik - - 6|6 E2 RIKEN cDNA 4833447P13 gene unknown 100036033 Lbm13 - - - lean body mass 13 unknown 12836 Mm.6200 NM_007738 ENSMUSG00000025650 Col7a1 AW209154 - 9 F2|9 59.63 cM collagen, type VII, alpha 1 protein-coding 69660 Mm.261182 NM_027154 ENSMUSG00000006301 Tmbim1 2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161 - 1|1 C3 transmembrane BAX inhibitor motif containing 1 protein-coding 100534273 Mm.389112 NM_001277076 ENSMUSG00000037432 Fer1l5 4930533C12Rik - 1|1 B fer-1-like 5 (C. elegans) protein-coding 777685 Ighv5-2 Gm16969 - 12|12 F1 immunoglobulin heavy variable 5-2 other 105244075 Gm39753 - - 2|2 predicted gene, 39753 ncRNA 102633110 XR_390526 Gm31017 - - 4 B1|4 predicted gene, 31017 ncRNA 101056017 XM_017313099 Gm28802 - - 1 C1.3|1 predicted gene 28802 protein-coding 102640804 XM_011244717 ENSMUSG00000095653 Gm21818 - - 13 D2.3|13 predicted gene, 21818 protein-coding 320780 9430029E18Rik - - 16|16 RIKEN cDNA 9430029E18 gene protein-coding 74600 Mm.288960 NM_029017 ENSMUSG00000037531 Mrpl47 4833424P18Rik|CGI-204|Gm9859|L47mt|MRP-L47|MTF/L47|NCM1 - 3|3 A3 mitochondrial ribosomal protein L47 protein-coding 100417335 Gm18538 - - 6|6 B2.3 diamine oxidase-like protein 2 pseudogene pseudo 85100 D7Mit305 - - 7 2.7 cM DNA Segment, Chr 7, Massachusetts Institute of Technology 305 unknown 77031 Mm.278924 NM_148929 ENSMUSG00000039463 Slc9a8 1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8 - 2|2 H3 solute carrier family 9 (sodium/hydrogen exchanger), member 8 protein-coding 62328 D6Mit174 - - 6 30.11 cM DNA segment, Chr 6, Massachusetts Institute of Technology 174 unknown 102467538 n-THatg1 n-Th1 - 1 H3|1 nuclear encoded tRNA histidine 1 (anticodon ATG) tRNA 319495 Mm.488998 A530060M17Rik - - 6|6 RIKEN cDNA A530060M17 gene protein-coding 102635039 XR_873608 Gm32476 - - 13 B3|13 predicted gene, 32476 ncRNA 723927 NR_029650 ENSMUSG00000106653 Mir299a Mir299|Mirn299|mir-299a|mmu-mir-298|mmu-mir-299|mmu-mir-299a - 12 F1|12 microRNA 299a ncRNA 78303 Mm.28022 NM_030082 ENSMUSG00000056895 Hist3h2ba 1500011O09Rik|AI413321 - 11|11 B1.3 histone cluster 3, H2ba protein-coding 14346 Mm.160272 NR_033644 Fut4-ps1 - - 17|17 D fucosyltransferase 4, pseudogene 1 pseudo 432995 Mm.271618 NM_001253796 ENSMUSG00000096215 Smim22 EG432995|Gm5480 - 16|16 A1 small integral membrane protein 22 protein-coding 21755 Mm.10725 NM_009355 ENSMUSG00000026125 Prss39 Tesp1 - 1|1 B protease, serine 39 protein-coding 68808 Mm.443347 NR_040707 ENSMUSG00000085457 1110046J04Rik - - 13|13 A3.3 RIKEN cDNA 1110046J04 gene ncRNA 75763 Mm.281668 NM_198005 ENSMUSG00000041966 Dcaf17 2810055O12Rik|4833418A01Rik|A030004A10Rik|A930009G19Rik|AI448937 - 2|2 C2 DDB1 and CUL4 associated factor 17 protein-coding 668341 Gm9113 EG668341 - 3|3 F2.1 TD and POZ domain containing pseudogene pseudo 102639272 Gm35622 - - 8|8 predicted gene, 35622 ncRNA 450219 Mm.371065 NM_001007461 ENSMUSG00000064224 Gsdma3 Bsk|Dfl|Fgn|Gsdm1l|Gsdm3|Rco2|Rim3 - 11 D|11 62.21 cM gasdermin A3 protein-coding 619597 Mm.417228 NM_001039219 ENSMUSG00000073608 Gal3st2c EG619597|Gm219|Gm6086 - 1 D|1 galactose-3-O-sulfotransferase 2C protein-coding 71027 Mm.158563 NM_027651 ENSMUSG00000022753 Tmem30c 4933401B01Rik|4933409A18Rik|Cdc50c - 16|16 C1.1 transmembrane protein 30C protein-coding 108167700 XM_017313741 Gm46139 - - 9 E3.3|9 predicted gene, 46139 protein-coding 102639803 Gm36029 - - 16|16 predicted gene, 36029 pseudo 207227 Mm.80170 NM_172440 ENSMUSG00000022829 Stxbp5l 9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2 - 16 26.32 cM|16 B3 syntaxin binding protein 5-like protein-coding 100035553 Tgq3 - - 4 57.66 cM triglyceride QTL 3 unknown 637720 Gm7217 EG637720 - 17 A3.2|17 ubiquitin associated domain containing 1 pseudogene pseudo 75045 Mm.444712 4930507L24Rik - - 11|11 RIKEN cDNA 4930507L24 gene protein-coding 272158 Mm.319286 NM_181857 ENSMUSG00000045102 Poln POL4P - 5|5 B2 DNA polymerase N protein-coding 102631641 LOC102631641 - - 14 E2.3 overexpressed in colon carcinoma 1 protein homolog pseudogene pseudo 76251 Mm.186610 NM_023507 ENSMUSG00000021470 Ercc6l2 0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278 - 13|13 B3 excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2 protein-coding 383815 Rps24-ps2 EG383815|Gm5271 - 3|3 A1 ribosomal protein S24, pseudogene 2 pseudo 100049589 Fmtq2 - - - femur mechanical trait QTL 2 unknown 100416885 Gm18303 - - 1|1 C1.1 predicted gene, 18303 pseudo 102466216 NR_105993 ENSMUSG00000099284 Mir7026 Gm27988|mmu-mir-7026 - 5|5 F microRNA 7026 ncRNA 75311 Mm.26078 NM_029247 ENSMUSG00000005131 4930550C14Rik AU017961 - 9|9 A5.3 RIKEN cDNA 4930550C14 gene protein-coding 100036087 Obwq2 - - 5 42.22 cM obesity and body weight QTL 2 unknown 100417818 LOC100417818 - - X|X E3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 pseudogene pseudo 227120 Mm.194183 NM_001114663 ENSMUSG00000038349 Plcl1 C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1 - 1|1 C1.2 phospholipase C-like 1 protein-coding 13507 Mm.89935 NM_007882 ENSMUSG00000059898 Dsc3 5430426I24Rik - 18 A2|18 11.11 cM desmocollin 3 protein-coding 62057 DXMit249 - - X 76.03 cM DNA segment, Chr X, Massachusetts Institute of Technology 249 unknown 258640 Mm.377607 NM_146646 ENSMUSG00000068816 Olfr152 MOR181-1|Olfr4-1|V1 - 2 D|2 49.95 cM olfactory receptor 152 protein-coding 102639172 LOC102639172 - - 15 A2 60S ribosomal protein L37 pseudogene pseudo 382044 Mm.482549 NM_001081372 ENSMUSG00000078964 Ces1b Gm5158 - 8 C5|8 carboxylesterase 1B protein-coding 72257 Mm.234155 NR_045900 ENSMUSG00000102000 1700006H21Rik - - 13|13 D2.1 RIKEN cDNA 1700006H21 gene ncRNA 108168861 XR_001783798 ENSMUSG00000086189 Gm15462 - - 3 A3|3 14.27 cM predicted gene 15462 ncRNA 21125 T(2;16)28H T28H - - reciprocal translocation, Chr 2 and 16, Harwell 28 other 60367 Mm.328321 NM_030688 ENSMUSG00000059203 Il1rapl2 - - X|X F1 interleukin 1 receptor accessory protein-like 2 protein-coding 108167417 XR_001778076 Gm45979 - - 7 B1|7 predicted gene, 45979 ncRNA 102639226 Mm.118499 XR_376053 Gm35585 Gm42586 - 3 G2|3 predicted gene, 35585 ncRNA 242594 Mm.65181 NM_001162980 ENSMUSG00000078612 Fyb2 1700024P16Rik|ARAP|C1orf168|Gm620 - 4|4 C6 FYN binding protein 2 protein-coding 751554 NR_030443 ENSMUSG00000076068 Mir678 Mirn678|mmu-mir-678 - 10 C1|10 microRNA 678 ncRNA 404711 Ighg2c Igh-1b - 12|12 F1 immunoglobulin heavy constant gamma 2C other 52206 Mm.272568 NM_024213 ENSMUSG00000029176 Anapc4 2610306D21Rik|APC4|D5Ertd249e - 5 C1|5 28.81 cM anaphase promoting complex subunit 4 protein-coding 378700 Mm.55392 NM_194357 ENSMUSG00000068008 Bpifb3 Lplunc3|Rya3 - 2|2 H1 BPI fold containing family B, member 3 protein-coding 102638090 XR_871376 Gm34735 - - 9 F4|9 predicted gene, 34735 ncRNA 665436 Gm11524 - - 11|11 D ribosomal protein S2 pseudogene pseudo 100035719 Mnic1 - - - macronutrient intake, carbohydrate 1 unknown 11541 Mm.40740 NM_007413 ENSMUSG00000018500 Adora2b A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384 - 11|11 B2 adenosine A2b receptor protein-coding 102633893 LOC102633893 - - 5 E5 protein FAM220A-like pseudo 207393 Mm.323188 NM_183141 ENSMUSG00000043460 Elfn2 6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29 - 15|15 E1 leucine rich repeat and fibronectin type III, extracellular 2 protein-coding 214932 Mm.255322 NM_144815 ENSMUSG00000058979 Hdhd5 A930002G03Rik|Cecr5 - 6 F1|6 56.95 cM haloacid dehalogenase like hydrolase domain containing 5 protein-coding 61342 D1Mit1000 D3Mit217 - 1|1 33.08 cM DNA segment, Chr 1, Massachusetts Institute of Technology 1000 unknown 102639701 Gm35952 - - 3|3 predicted gene, 35952 ncRNA 20304 Mm.284248 NM_013653 ENSMUSG00000035042 Ccl5 MuRantes|RANTES|SISd|Scya5|TCP228 - 11 C|11 50.66 cM chemokine (C-C motif) ligand 5 protein-coding 102635795 XR_382584 Gm33043 - - 13 B3|13 predicted gene, 33043 ncRNA 27569 D5Buc35 249L8.T7 - 5 38.39 cM DNA segment, Chr 5, Bucan 35 unknown 108168439 Gm14721 - - X A7.2|X 36.03 cM predicted gene 14721 pseudo 100034833 Vent2 Vent4b - 4 22.38 cM ventricular size 2 unknown 257789 Gm5010 EG257789|GA_x5J8B7W60AJ-925630-926226 - 9 A5.1|9 olfactory receptor GA_x5J8B7W60AJ-925630-926226 pseudo 111234 Ppib-rs2 Cphn2-rs2 - - peptidylprolyl isomerase B, related sequence 2 pseudo 67851 Mm.209953 NM_026411 ENSMUSG00000019797 1700021F05Rik - - 10|10 B2 RIKEN cDNA 1700021F05 gene protein-coding 107728 Tcrd-V - - - T cell receptor delta, variable region other 109572 Hm - - - hammer toe unknown 100417455 Gm18617 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 102639918 Mm.374192 NR_155514 Gm36117 - - 17 A1|17 predicted gene, 36117 ncRNA 320002 C230083P08Rik - - 10|10 B4 RIKEN cDNA C230083P08 gene protein-coding 100416005 Gm17865 - - X|X A3.1 predicted gene, 17865 pseudo 266793 NR_004410 ENSMUSG00000093178 Snord87 MBII-276|Rnu87|U87 - 1 A2|1 small nucleolar RNA, C/D box 87 snoRNA 100217427 NR_028527 ENSMUSG00000093009 Snord52 MBII-297 - 17 B1|17 small nucleolar RNA, C/D box 52 snoRNA 665957 Gm7862 EG665957 - 12|12 C3 predicted gene 7862 pseudo 112016 Dob7 - - X 57.38 cM dietary obesity 7 unknown 228994 Mm.30205 NM_173761 ENSMUSG00000038848 Ythdf1 2210410K23Rik|8030473O16 - 2|2 H4 YTH domain family 1 protein-coding 272465 Mm.250502 NM_001143671 ENSMUSG00000038457 Tmem255b Fam70b|Gm687 - 8|8 A1.1 transmembrane protein 255B protein-coding 102640340 Far2os1 Gm16583 - 6|6 78.49 cM fatty acyl CoA reductase 2, opposite strand 1 ncRNA 69770 Mm.302754 NM_027207 ENSMUSG00000035595 1600002K03Rik - - 10|10 C1 RIKEN cDNA 1600002K03 gene protein-coding 80857 Mm.425526 NM_030610 ENSMUSG00000031603 Fgf20 - - 8|8 A4 fibroblast growth factor 20 protein-coding 105244700 XR_868201 Gm40259 - - 4 D2.2|4 predicted gene, 40259 ncRNA 217600 Rpl26-ps2 EG217600|Gm4805 - 12|12 C1 ribosomal protein L26, pseudogene 2 pseudo 56843 Mm.286668 NM_020277 ENSMUSG00000009246 Trpm5 9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1 - 7|7 F5 transient receptor potential cation channel, subfamily M, member 5 protein-coding 100040255 Gm14700 - - X A7.1|X predicted gene 14700 protein-coding 14682 Mm.439701 NM_008139 ENSMUSG00000024639 Gnaq 1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI - 19 A|19 11.01 cM guanine nucleotide binding protein, alpha q polypeptide protein-coding 100041323 Ly6e-ps1 Gm3271|Ly67-rs1|Ly6e-rs1|Tsa1-rs1 - 12 C3|12 30.22 cM lymphocyte antigen 6 complex, locus E, pseudogene 1 pseudo 102640648 Gm36663 - - 5|5 predicted gene, 36663 ncRNA 228714 Mm.227925 NM_181417 ENSMUSG00000027425 Kat14 2510008M08Rik|ATAC2|AU023459|Csrp2bp|D2Ertd473e|D2Wsu131e|E430020F17 - 2 G1|2 71.01 cM lysine acetyltransferase 14 protein-coding 259028 Mm.377796 NM_147026 ENSMUSG00000063823 Olfr532 MOR251-1 - 7|7 F4 olfactory receptor 532 protein-coding 19981 Mm.21529 NM_009084 ENSMUSG00000046330 Rpl37a - - 1|1 C3 ribosomal protein L37a protein-coding 51852 D5Sut1e - - - DNA segment, Chr 5, Sutcliffe 1 expressed unknown 492963 Hcif2 Hcf2 - 1 68.38 cM hepatocarcinogenesis in females 2 unknown 97249 C80889 - - - expressed sequence C80889 unknown 17848 Murrs - - - murine retrovirus related DNA sequences other 100417368 Gm18567 - - 14|14 A1 ubiquitin specific peptidase 7 pseudogene pseudo 70873 Mm.475234 NM_027585 ENSMUSG00000038085 Cnbd2 4921517L17Rik|5430421B09Rik|Cris - 2 H1|2 cyclic nucleotide binding domain containing 2 protein-coding 241943 Mm.269018 NM_178418 ENSMUSG00000047696 Ccdc144b - - 3|3 B coiled-coil domain containing 144B protein-coding 108169117 LOC108169117 - - 5 G2 40S ribosomal protein S29 pseudogene pseudo 71351 Mm.34695 NM_027768 ENSMUSG00000044121 5430402E10Rik OBP2 - X|X B RIKEN cDNA 5430402E10 gene protein-coding 665734 LOC665734 - - 5|5 PRAME family member 8-like pseudo 105245931 XR_875194 Gm41309 - - 15 B3.1|15 predicted gene, 41309 ncRNA 74488 Mm.290677 NM_028973 ENSMUSG00000052316 Lrrc15 5430427N11Rik|LIB - 16|16 B2 leucine rich repeat containing 15 protein-coding 100503385 Mm.485375 Gm19666 - - 5|5 10.0 cM predicted gene, 19666 ncRNA 110211 Tctex12 Tctex-12 - - t-complex testis-expressed 12 protein-coding 66830 Mm.289698 NM_025788 ENSMUSG00000001910 Nacc1 2010001H03Rik|4930511N13Rik|Btbd14b|Nac1 - 8 C2|8 41.02 cM nucleus accumbens associated 1, BEN and BTB (POZ) domain containing protein-coding 100303730 Mm.474996 Gm16163 - - 8|8 predicted gene 16163 unknown 676750 Gm9689 - - 7|7 A1 predicted gene 9689 pseudo 102636542 XR_387987 Gm33578 - - 8 D3|8 predicted gene, 33578 ncRNA 387225 NR_029533 ENSMUSG00000065405 Mir30a Mirn30a|mir-30a|mmu-mir-30a - 1|1 A5 microRNA 30a ncRNA 105245287 XR_872042 Gm40763 - - 10 D1|10 predicted gene, 40763 ncRNA 102638168 XR_378738 Gm34795 - - 8 A1.1|8 predicted gene, 34795 ncRNA 100579151 Mm.412450 NR_045754 ENSMUSG00000085253 Gm16833 - - 9 A1|9 2.46 cM predicted gene, 16833 ncRNA 105244142 XR_866192 Gm39809 - - 2 C1.1|2 predicted gene, 39809 ncRNA 100302653 Gm17812 - - 6|6 F1 ATPase, H+ transporting, lysosomal V1 subunit G1 pseudogene pseudo 100040016 Mm.455498 NM_001085348 ENSMUSG00000096788 Rhox2e Rhox2.5|Rhox2d - X|X A3.3 reproductive homeobox 2E protein-coding 100043429 Gm12335 - - 11|11 B5 SMT3 suppressor of mif two 3 homolog 2 pseudogene pseudo 14063 Mm.1614 NM_007974 ENSMUSG00000021678 F2rl1 Gpcr11|PAR-2|Par2 - 13 D1|13 49.53 cM coagulation factor II (thrombin) receptor-like 1 protein-coding 102635544 Mm.406804 XR_381796 Gm26698 - - 12 D2|12 predicted gene, 26698 ncRNA 217351 Mm.40272 NM_198022 ENSMUSG00000025571 Tnrc6c 9930033H14Rik|mKIAA1582 - 11|11 E2 trinucleotide repeat containing 6C protein-coding 75292 Mm.252776 NM_029239 ENSMUSG00000024070 Prkd3 4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn - 17|17 E3 protein kinase D3 protein-coding 102640364 Gm28298 - - Y|Y predicted gene 28298 ncRNA 436015 XR_870059 B130016D09Rik - - 7 F5|7 RIKEN cDNA B130016D09 cDNA ncRNA 102636004 XR_388108 Gm33199 - - 8 E1|8 predicted gene, 33199 ncRNA 171187 Mm.451648 NM_134169 ENSMUSG00000059375 Vmn1r33 V1rc14 - 6|6 C1 vomeronasal 1 receptor 33 protein-coding 102636624 Gm33635 - - 11|11 predicted gene, 33635 ncRNA 665922 Gm11557 - - 11|11 D glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 66889 Mm.27764 NM_023270 ENSMUSG00000031438 Rnf128 1300002C13Rik|AI987883|GRAIL|Greul1 - X|X F1 ring finger protein 128 protein-coding 109669 Hrt1 Hrt-1 - - heart protein 1 protein-coding 101320 Mm.44896 NM_207210 ENSMUSG00000030345 Dyrk4 AW049118|Dyrk4a|Dyrk4b - 6|6 F3 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 protein-coding 97664 C86544 - - - expressed sequence C86544 protein-coding 14086 Mm.289707 NM_007984 ENSMUSG00000029581 Fscn1 AI663989|Fan1|fascin-1 - 5 G2|5 81.84 cM fascin actin-bundling protein 1 protein-coding 102631604 XR_383881 Gm29901 - - 15 B1|15 predicted gene, 29901 ncRNA 15382 Mm.237064 NM_010447 ENSMUSG00000046434 Hnrnpa1 HDP-1|Hdp|Hnrpa1|hnRNP A1|hnrnp-A1 - 15 F3|15 58.58 cM heterogeneous nuclear ribonucleoprotein A1 protein-coding 109436 Scc6 - - 11 7.3 cM colon tumor susceptibility 6 unknown 546957 Gm20749 - - 7|7 B3 zinc finger, MYND-type containing 8 pseudogene pseudo 74455 Mm.478923 NM_028950 ENSMUSG00000026707 Nsun6 4933403D21Rik|4933414E04Rik|NOPD1 - 2|2 A2 NOL1/NOP2/Sun domain family member 6 protein-coding 76899 Mm.131098 NM_029793 ENSMUSG00000026754 Golga1 0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97 - 2|2 B golgi autoantigen, golgin subfamily a, 1 protein-coding 13206 Mm.12818 NM_010029 ENSMUSG00000021758 Ddx4 AV206478|Mvh|VASA - 13 D2.2|13 63.87 cM DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 protein-coding 111695 Igh-D - - - immunoglobulin heavy chain diversity region other 330552 Mm.242875 NM_177892 Gm9801 A230097C02|EG330552 - 7 C|7 predicted gene 9801 unknown 100417305 Gm18518 - - 13|13 C3 crumbs homolog 1 pseudogene pseudo 100416401 Gm12477 - - 4|4 B2 ribosomal protein L18 pseudogene pseudo 384379 Rpl31-ps7 EG384379|Gm5304 - 6 B2.3|6 ribosomal protein L31, pseudogene 7 pseudo 404423 Olfr760-ps1 GA_x5J8B7W5KGR-1060859-1061426|MOR121-5_p - 17|17 B1 olfactory receptor 760, pseudogene 1 pseudo 22422 Mm.306946 NM_009528 ENSMUSG00000022382 Wnt7b Wnt-7b - 15 E2|15 40.39 cM wingless-type MMTV integration site family, member 7B protein-coding 404470 Olfr1075-ps1 GA_x5J8B7W4CQV-107796-107307|GA_x6K02T2Q125-47985847-47986335 - 2|2 D olfactory receptor 1075, pseudogene 1 pseudo 15181 Gm10093 EG15181|Gm1824|HD1|Hdac1|Hdac1-ps|RPD3 - 17 E3|17 histone deacetylase 1 pseudogene pseudo 105245834 Gm41224 - - 14|14 predicted gene, 41224 ncRNA 20148 Mm.14063 NM_011303 ENSMUSG00000066026 Dhrs3 Rsdr1|retSDR1 - 4|4 E1 dehydrogenase/reductase (SDR family) member 3 protein-coding 102640882 Mm.371746 XR_382643 1700112M02Rik - - 13|13 C1 RIKEN cDNA 1700112M02 gene ncRNA 102636081 XR_384416 Gm33253 - - 15 F1|15 predicted gene, 33253 ncRNA 101095 Mm.440186 NM_146175 ENSMUSG00000025821 Zfp282 AI449432|C81429|E430019K09Rik|HUB1 - 6|6 B2.3 zinc finger protein 282 protein-coding 18755 Mm.341677 NM_008856 ENSMUSG00000021108 Prkch Pkch - 12|12 C3 protein kinase C, eta protein-coding 105242545 Mm.387182 XR_868646 Gm16120 - - 5 G2|5 78.89 cM predicted gene 16120 ncRNA 13885 Mm.38055 NM_016903 ENSMUSG00000021996 Esd Es-10|Es10|FGH|sid478 - 14 D3|14 39.38 cM esterase D/formylglutathione hydrolase protein-coding 108168342 XR_001782189 Gm46597 - - 17 E4|17 predicted gene, 46597 ncRNA 666455 Gm8115 EG666455 - 5|5 C1 eukaryotic translation initiation factor 6 pseudogene pseudo 60993 D2Mit115 - - 2 2.25 cM DNA segment, Chr 2, Massachusetts Institute of Technology 115 unknown 100046082 Gm12012 - - 11|11 A2 pygopus homolog 2-like pseudo 76917 Mm.269613 NM_029798 ENSMUSG00000023911 Flywch2 2810417J12Rik|3010014L17Rik|AW548203 - 17|17 A3.3 FLYWCH family member 2 protein-coding 102640663 XR_384125 Gm36677 - - 15 D1|15 predicted gene, 36677 ncRNA 100041450 Mm.402233 XR_001785234 Gimap1os Gm3345 - 6 B2.3|6 GTPase, IMAP family member 1, opposite strand unknown 404573 AL118014 - - - expressed sequence AL118014 unknown 53151 363o12-T7 - - - DNA segment, 363o12-T7 unknown 102638151 Mm.428019 XR_872911 Gm16876 - - 12 D3|12 45.02 cM predicted gene, 16876 ncRNA 97257 C85308 - - - expressed sequence C85308 unknown 100035678 Bod10 BOD16.1 - 16 13.8 cM bone length and organs 10 unknown 100038624 Mm.332317 Gm10459 - - - predicted gene 10459 unknown 319783 Mm.349813 NR_040324 ENSMUSG00000097756 A730056A06Rik C76391 - 7|7 D1 RIKEN cDNA A730056A06 gene ncRNA 100862066 XM_006504217 ENSMUSG00000109572 Cfap99 Gm21446 - 5 B2|5 cilia and flagella associated protein 99 protein-coding 21087 T(14;18)14Ad T14Ad - - reciprocal translocation, Chr 14 and 18, Adler 14 other 21442 tclTuw20 tcl-Tuw20 - - t-complex lethal Tuw20 unknown 27923 D16Ium42 - - - DNA segment, Chr 16, Indiana University Medical 42 unknown 104952 AU022348 - - - expressed sequence AU022348 unknown 18015 Mm.255596 NM_010897 ENSMUSG00000020716 Nf1 AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1 - 11 B5|11 46.74 cM neurofibromin 1 protein-coding 319720 Mm.394996 NR_131118 9630028I04Rik - - 17|17 A3.3 RIKEN cDNA 9630028I04 gene ncRNA 233099 Mm.110829 NM_001100464 ENSMUSG00000066584 Scgb2b27 Abpbg27|Abpbg5|Scgb2b5 - 7|7 B1 secretoglobin, family 2B, member 27 protein-coding 73792 Mm.72405 XR_878702 4930401G09Rik - - 5|5 F RIKEN cDNA 4930401G09 gene protein-coding 56459 Mm.258530 NM_019748 ENSMUSG00000052833 Sae1 2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a - 7 A2|7 8.88 cM SUMO1 activating enzyme subunit 1 protein-coding 492948 Alcrsp1 - - 1 46.74 cM alcohol response 1 unknown 100041752 Gm3496 - - 1|1 C1.1 predicted gene 3496 pseudo 85124 D5Mit106 - - 5 24.27 cM DNA segment, Chr 5, Massachusetts Institute of Technology 106 unknown 242800 Mm.72944 NM_172878 ENSMUSG00000046637 Ttc34 4932418L02|B230396O12Rik - 4|4 E2 tetratricopeptide repeat domain 34 protein-coding 100534283 Gm13108 - - 4|4 E1 PRAME family member 6 pseudogene pseudo 258693 Mm.223128 NM_146698 ENSMUSG00000045030 Olfr1443 MOR202-8 - 19|19 A olfactory receptor 1443 protein-coding 61004 D4Mit101 - - 4 4.29 cM DNA segment, Chr 4, Massachusetts Institute of Technology 101 unknown 17229 Mm.7409 NM_010781 ENSMUSG00000033825 Tpsb2 AV011504|MMCP-6|Mcp-6|Mcp6|Mcpt6 - 17 A3.3|17 12.53 cM tryptase beta 2 protein-coding 68364 Mm.52711 NM_026696 ENSMUSG00000058706 0610030E20Rik 1500031N04Rik|2810411C16Rik|AI461894 - 6 C1|6 RIKEN cDNA 0610030E20 gene protein-coding 105242975 XR_882227 Gm39036 - - 7 D1|7 predicted gene, 39036 ncRNA 102638407 XR_380739 Gm34983 - - 10 D1|10 predicted gene, 34983 ncRNA 108167460 XR_001778288 Gm46001 - - 7 F3|7 predicted gene, 46001 ncRNA 620376 Mm.390758 Gm6145 - - 14 E2.3|14 predicted gene 6145 protein-coding 100418122 Gm19015 - - 14|14 A3 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 18186 Mm.271745 NM_008737 ENSMUSG00000025810 Nrp1 C530029I03|NP-1|NPN-1|Npn1|Nrp - 8 E2|8 75.78 cM neuropilin 1 protein-coding 108167504 XR_001778355 Gm46020 - - 7 F2|7 predicted gene, 46020 ncRNA 62488 D10Mit118 - - 10 43.66 cM DNA segment, Chr 10, Massachusetts Institute of Technology 118 unknown 75089 Mm.268922 NM_029166 ENSMUSG00000019951 Uhrf1bp1l 2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701 - 10|10 C2 UHRF1 (ICBP90) binding protein 1-like protein-coding 105242449 XM_017316318 ENSMUSG00000094811 LOC105242449 - - 14 A1 uncharacterized LOC105242449 protein-coding 62792 D15Mit188a D15Mit188 - 15 35.61 cM DNA segment, Chr 15, Massachusetts Institute of Technology 188a unknown 102635742 Gm33003 - - 9|9 predicted gene, 33003 ncRNA 108167555 XR_001778665 Gm46053 - - 8 E1|8 predicted gene, 46053 ncRNA 105245543 XR_873610 Gm40988 - - 13 B3|13 predicted gene, 40988 ncRNA 74855 Mm.269534 NM_029107 ENSMUSG00000079177 Fam228a 4930417G10Rik - 12|12 A1.1 family with sequence similarity 228, member A protein-coding 320650 Mm.188979 NM_177218 9530056K15Rik - - 5|5 G2 RIKEN cDNA 9530056K15 gene unknown 108168933 XR_001784254 LOC108168933 - - 4 A3 uncharacterized LOC108168933 ncRNA 104101 Gtayu3 - - - gene trap AYU 3 unknown 79043 Mm.274794 NM_027141 ENSMUSG00000024160 Spsb3 2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204 - 17|17 A3.3 splA/ryanodine receptor domain and SOCS box containing 3 protein-coding 11534 Mm.188734 NM_134079 ENSMUSG00000039197 Adk 2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak - 14|14 A3 adenosine kinase protein-coding 100416455 Gm16074 - - 10|10 A1 ring finger protein 4 pseudogene pseudo 116756 Drb3 - - - dopamine receptor binding 3 unknown 67888 Mm.212428 NM_026433 ENSMUSG00000069763 Tmem100 1810057C19Rik|AV011897 - 11|11 C transmembrane protein 100 protein-coding 105244316 Gm39950 - - 2|2 predicted gene, 39950 ncRNA 231293 Mm.280211 NM_181323 ENSMUSG00000029154 Cwh43 C130090K23Rik|imds-60 - 5|5 C3.2 cell wall biogenesis 43 C-terminal homolog protein-coding 102640254 XR_379676 Gm36366 - - 9 E3.1|9 predicted gene, 36366 ncRNA 100038474 Mm.289583 K230015D01Rik - - - RIKEN cDNA K230015D01 gene ncRNA 102637082 XR_386891 Gm33984 - - X A1.1|X predicted gene, 33984 ncRNA 432855 Mm.490799 NR_004444 Zfhx2os Zfhx2as - 14|14 C3 zinc finger homeobox 2, opposite strand ncRNA 633093 Mm.482503 NR_033570 Gm7104 - - 12 D2|12 REX1, RNA exonuclease 1 homolog pseudogene pseudo 270533 LOC270533 Gm1483|Gm653 - - elongation factor B polypeptide 3-like unknown 100039235 Mm.484147 Gm16529 - - 8|8 C1 predicted gene, 16529 unknown 105094 AA516957 - - - expressed sequence AA516957 unknown 102637830 Gm34540 - - 2|2 predicted gene, 34540 ncRNA 102467635 n-TAagc7 n-Ta7 - 13 A3.1|13 nuclear encoded tRNA alanine 7 (anticodon AGC) tRNA 19582 Rb(5.6)1Ty Rb1Ty - - Robertsonian translocation, Chr 5 and 6, Taylor 1 other 64933 Mm.390023 NM_029505 ENSMUSG00000031539 Ap3m2 5830445E16Rik|AP-3B - 8|8 A2 adaptor-related protein complex 3, mu 2 subunit protein-coding 257851 Olfr431-ps1 EG257851|GA_x5J8B7W3B3M-30314-31216|Gm5033 - 1 H3|1 olfactory receptor 431, pseudogene 1 pseudo 100169872 Gm10926 - - - predicted gene 10926 ncRNA 53292 538C3T7 - - - DNA segment, 538C3T7 (Roswell Park) unknown 108167776 Gm46194 - - 10 C1|10 predicted gene, 46194 pseudo 328424 Mm.224464 NM_206974 ENSMUSG00000046168 Kcnrg Clld4|E030012H22Rik|Gm745 - 14|14 D1 potassium channel regulator protein-coding 102635149 XR_387530 Gm32561 - - 3 A1|3 predicted gene, 32561 ncRNA 105245073 XR_873010 Gm40575 - - 12 F1|12 predicted gene, 40575 ncRNA 193385 Mm.217319 NM_029679 ENSMUSG00000036006 Ripor2 Fam65b - 13|13 A3.1 RHO family interacting cell polarization regulator 2 protein-coding 61083 D4Mit292 - - 4 13.62 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 292 unknown 383820 Mm.483420 XR_106108 5330432E05Rik - - 3 A1|3 RIKEN cDNA 5330432E05 gene ncRNA 260297 Mm.390965 NM_030890 ENSMUSG00000015476 Prrt1 Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4 - 17|17 B1 proline-rich transmembrane protein 1 protein-coding 110771 Amh-rs2 - - - anti-Mullerian hormone, related sequence 2 protein-coding 105242649 XR_869060 Gm38805 - - 6 B2.3|6 predicted gene, 38805 ncRNA 384363 Gm1401 - - 6|6 A3.3 predicted gene 1401 pseudo 258150 Mm.377360 NM_001011849 ENSMUSG00000094496 Olfr792 MOR108-2 - 10|10 D3 olfactory receptor 792 protein-coding 116530 Tbrs1 Tbrl1|Trl-1 - 1 65.26 cM tuberculosis resistance 1 unknown 102638301 Gm12841 - - 4|4 53.73 cM predicted gene 12841 ncRNA 751518 NR_030442 ENSMUSG00000104755 Mir677 Mirn677|mir-677|mmu-mir-677 - 10 D3|10 microRNA 677 ncRNA 105243317 Gm39274 - - 8|8 predicted gene, 39274 ncRNA 330593 Mm.482299 5430421B17 - - 7|7 D3 uncharacterized protein 5430421B17 protein-coding 112000 Hlq2 - - - heat loss QTL 2 unknown 110120542 LOC110120542 - - - VISTA enhancer mm1503 biological-region 60854 D5Mit90 - - 5 48.46 cM DNA segment, Chr 5, Massachusetts Institute of Technology 90 unknown 692119 Igkv13-62-1 gc33r - 6|6 C1 immunoglobulin kappa chain variable 13-62-1 pseudo 73737 Mm.27608 NM_198001 ENSMUSG00000039195 1110008P14Rik C79326 - 2|2 B RIKEN cDNA 1110008P14 gene protein-coding 320769 Mm.60992 NM_177256 ENSMUSG00000050114 Prdx6b 1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps - 2 C3|2 48.03 cM peroxiredoxin 6B protein-coding 106267 Mm.441480 AI844685 - - - expressed sequence AI844685 unknown 442851 D3Tem2 - - 3 46.72 cM DNA segment, Chr 3, Temple 2 unknown 493177 Vtbt3 - - 4 45.76 cM vertebral trabecular bone trait 3 unknown 105246193 XR_876407 Gm41526 - - 17 A1|17 predicted gene, 41526 ncRNA 111237 Bmp4-ps Bmp2-rs1|Bmp2b-2|Bmp2b-rs1 - X C1|X bone morphogenetic 4, pseudogene pseudo 102639878 XR_389809 Gm36086 - - 5 B1|5 predicted gene, 36086 ncRNA 319864 Mm.446665 D230035N22Rik - - 11|11 RIKEN cDNA D230035N22 gene protein-coding 17750 Mm.147226 NM_008630 ENSMUSG00000031762 Mt2 AA409533|MT-II|Mt-2 - 8 C5|8 46.32 cM metallothionein 2 protein-coding 100526535 NR_037250 ENSMUSG00000105546 Mir669a-4 mmu-mir-669a-4 - 2 A1|2 8.22 cM microRNA 669a-4 ncRNA 258573 Mm.223101 NM_146580 ENSMUSG00000046975 Olfr1020 MOR201-2 - 2|2 D olfactory receptor 1020 protein-coding 258390 Mm.377474 NM_146395 ENSMUSG00000063844 Olfr1276 MOR245-10 - 2|2 E3 olfactory receptor 1276 protein-coding 108559 Iapls2-20 - - - intracisternal A particle, lymphocyte specific 2-20 other 319594 Mm.145278 NM_176958 ENSMUSG00000036450 Hif1an 2310046M24Rik|A830014H24Rik|FIH|FIH1 - 19|19 C3 hypoxia-inducible factor 1, alpha subunit inhibitor protein-coding 619299 Mm.387056 NR_152165 9230020A06Rik - - 11|11 B4 RIKEN cDNA 9230020A06 gene ncRNA 245269 Mm.403943 NM_175538 ENSMUSG00000095930 Nim1k E130304F04Rik|Nim1 - 13|13 D2.3 NIM1 serine/threonine protein kinase protein-coding 71233 Mm.27658 NM_027728 ENSMUSG00000026679 Enkur 4933434I06Rik|AU016229 - 2|2 A3 enkurin, TRPC channel interacting protein protein-coding 22241 Mm.271898 NM_009469 ENSMUSG00000029512 Ulk1 AU041434|Unc51.1|mKIAA0722 - 5|5 F unc-51 like kinase 1 protein-coding 105246824 XR_879275 Gm42048 - - 8 E1|8 predicted gene, 42048 ncRNA 27050 Mm.236868 NM_012052 ENSMUSG00000030744 Rps3 D7Ertd795e|Rs_3 - 7 E1|7 54.07 cM ribosomal protein S3 protein-coding 102639370 XR_375947 Gm35700 - - 3 F2.3|3 predicted gene, 35700 ncRNA 102634910 XR_383907 Gm32383 - - 15 B2|15 predicted gene, 32383 ncRNA 100504021 Gm17638 - - 15|15 36.92 cM predicted gene, 17638 ncRNA 330402 Mm.297742 D030044L04Rik Gm841 - 6|6 F1 RIKEN cDNA D030044L04 gene protein-coding 102635936 Gm33146 - - 7 F3|7 predicted gene, 33146 pseudo 100417770 Gm18814 - - 15|15 E3 karyopherin alpha 7 (importin alpha 8) pseudogene pseudo 100217369 Gm10935 - - - predicted gene 10935 unknown 723945 NR_029648 ENSMUSG00000076983 Mir297a-2 Gm24114|Mir297-2|Mirn297-2 - 2 A1|2 22.89 cM microRNA 297a-2 ncRNA 432676 Gm5436 EG432676 - 12|12 D1 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit pseudogene pseudo 109478 Mlviq2 - - - murine leukemia virus infection QTL, 2 unknown 408073 D6Wum27 - - - DNA segment, Chr 6, Washington University School of Medicine 27 unknown 330379 Mm.297741 NM_201356 Gm839 - - 6|6 D1 predicted gene 839 ncRNA 112378 Cadfar - - 6 78.49 cM cadmium-induced forelimb autopod reduction defect unknown 105244323 XR_866840 Gm39957 - - 2 G3|2 predicted gene, 39957 ncRNA 101055739 LOC101055739 - - - uncharacterized LOC101055739 protein-coding 100415987 Gm17856 - - X|X A3.1 predicted gene, 17856 pseudo 212999 Mm.220357 NM_145390 ENSMUSG00000031691 Tnpo2 1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2 - 8|8 C3 transportin 2 (importin 3, karyopherin beta 2b) protein-coding 102641946 Mm.379882 AA692955 - - 17|17 expressed sequence AA692955 protein-coding 100415976 Gm17847 - - 1|1 E2.1 keratin 18 pseudogene pseudo 446211 Mm.266854 NR_131974 ENSMUSG00000103935 AY702102 STDP1 - 2|2 H3 cDNA sequence AY702102 ncRNA 14561 Mm.299218 NM_010272 ENSMUSG00000025352 Gdf11 BMP-11|Bmp11 - 10|10 D3 growth differentiation factor 11 protein-coding 105244535 XR_867574 Gm40128 - - 3 G1|3 predicted gene, 40128 ncRNA 66431 Mm.45063 NM_025560 ENSMUSG00000039670 Oxld1 1810049H13Rik - 11|11 E2 oxidoreductase like domain containing 1 protein-coding 100526473 NR_037232 ENSMUSG00000070129 Mir3071 mir-3071|mmu-mir-3071 - 12 F1|12 60.39 cM microRNA 3071 ncRNA 12292 Mm.4418 NM_014193 ENSMUSG00000026407 Cacna1s AW493108|Cav1.1|Cchl1a3|DHPR|fmd|mdg|sj - 1 E4|1 59.55 cM calcium channel, voltage-dependent, L type, alpha 1S subunit protein-coding 218739 Mm.39919 NM_177624 ENSMUSG00000044772 Sntn A430083B19Rik - 14|14 A1 sentan, cilia apical structure protein protein-coding 622459 Mm.479656 NR_033332 ENSMUSG00000081769 Gm12216 602-19-115 - 11|11 B1.3 predicted gene 12216 ncRNA 103655 Mm.337476 NM_146013 ENSMUSG00000019368 Sec14l4 AI256582|AW536553|SPF|TAP - 11|11 A1 SEC14-like lipid binding 4 protein-coding 14407 Mm.434343 NM_008074 ENSMUSG00000055026 Gabrg3 B230362M20Rik|Gabrg-3 - 7 B5|7 33.48 cM gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3 protein-coding 629206 Mm.391444 NR_046029 ENSMUSG00000112533 Gm20758 - - 10|10 D1 predicted gene, 20758 ncRNA 18759 Mm.291554 NM_008857 ENSMUSG00000037643 Prkci 2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165 - 3 A3|3 14.65 cM protein kinase C, iota protein-coding 97423 Mm.5250 NM_133790 ENSMUSG00000059277 R74862 - - 7|7 F5 expressed sequence R74862 ncRNA 102640132 XR_001780343 Gm36273 - - 11 E1|11 predicted gene, 36273 ncRNA 72587 Mm.320469 NM_028291 ENSMUSG00000029647 Pan3 2700050F09Rik|A430027N15Rik|AU014670 - 5|5 G3 PAN3 poly(A) specific ribonuclease subunit protein-coding 66315 Mm.255784 NM_025483 ENSMUSG00000052917 Senp7 2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676 - 16|16 C1.1 SUMO1/sentrin specific peptidase 7 protein-coding 105246833 LOC105246833 - - - uncharacterized LOC105246833 ncRNA 77384 Mm.138063 C030017D09Rik - - 13|13 RIKEN cDNA C030017D09 gene protein-coding 102639411 Gm35734 - - 1|1 predicted gene, 35734 ncRNA 72344 Mm.232293 NM_001033528 ENSMUSG00000033909 Usp36 2700002L06Rik|mKIAA1453 - 11|11 E2 ubiquitin specific peptidase 36 protein-coding 100274 AU015892 - - - expressed sequence AU015892 protein-coding 320489 Mm.246728 C530050E15Rik - - 13|13 A3.1 RIKEN cDNA C530050E15 gene ncRNA 77645 Mm.447752 NR_040617 ENSMUSG00000084919 Ptprtos C330008G21Rik - 2|2 H2 protein tyrosine phosphatase, receptor type T, opposite strand ncRNA 380718 Mm.24404 NM_001039684 ENSMUSG00000034121 Mks1 AK190930|B8d3|avc6 - 11|11 C Meckel syndrome, type 1 protein-coding 102632634 XR_387804 Gm30660 - - 8 C2|8 predicted gene, 30660 ncRNA 73188 3110062G12Rik - - 1|1 RIKEN cDNA 3110062G12 gene protein-coding 105244993 Mm.197007 XR_870609 LOC105244993 - - 9 A4 uncharacterized LOC105244993 ncRNA 108863616 LOC108863616 - - 5 F Gfi1 promoter regions biological-region 102634677 XR_390662 Gm32209 - - 4 C2|4 predicted gene, 32209 ncRNA 100035010 Fmgty5 - - 6 57.07 cM femur geometry 5 unknown 276905 Mm.38019 NM_177778 ENSMUSG00000057219 Armc7 A630084C13|BC023126 - 11|11 E2 armadillo repeat containing 7 protein-coding 109280047 LOC109280047 Mm387 - - VISTA enhancer mm387 biological-region 100417469 Gm18631 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 72617 2700088M07Rik - - 11|11 RIKEN cDNA 2700088M07 gene protein-coding 98879 AI197442 - - - expressed sequence AI197442 unknown 11810 Mm.3333 NM_031159 ENSMUSG00000040613 Apobec1 Cdar1 - 6 F1|6 57.68 cM apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 protein-coding 102637028 XR_374043 Gm33940 Gm45314 - 2 A3|2 predicted gene, 33940 ncRNA 108605 Iap3rc12 - - - intracisternal A-type particle, U3 region, SINE repeat c-12 other 320377 Mm.486022 NR_015514 9330175E14Rik A630085K21 - 8|8 C5 RIKEN cDNA 9330175E14 gene ncRNA 71092 Mm.243827 NR_045433 4930452A19Rik 4933424P20Rik - 17|17 A1 RIKEN cDNA 4930452A19 gene ncRNA 493129 Hdlq7 - - 5 28.55 cM HDL QTL 7 unknown 102639571 XR_377731 Gm35851 - - 6 C1|6 predicted gene, 35851 ncRNA 12811 cod - - - cerebellar outflow degeneration unknown 100416392 Gm12133 - - 11|11 A5 ribosomal protein S2 pseudogene pseudo 100035990 Aspt1 - - - aspartate transaminase trait 1 unknown 69561 Mm.396403 XR_385539 2310015A16Rik - - 17|17 B1 RIKEN cDNA 2310015A16 gene ncRNA 101460 AA536965 - - - expressed sequence AA536965 unknown 108168600 XM_017318806 LOC108168600 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 100035045 Kdnw1 - - - kidney weight 1 unknown 100042916 Mm.123675 Gm4107 - - 18 C|18 predicted gene 4107 unknown 20688 Mm.34699 NM_009239 ENSMUSG00000025323 Sp4 5730497N03Rik|HF-1b|HF1-b - 12 F2|12 63.48 cM trans-acting transcription factor 4 protein-coding 105246731 Gm41973 - - 1|1 predicted gene, 41973 ncRNA 108168306 XR_001781998 Gm46566 - - 16 B3|16 predicted gene, 46566 ncRNA 102632097 Gm30260 - - 2|2 predicted gene, 30260 protein-coding 28296 D10Jhu64e - - - DNA segment, Chr 10, Johns Hopkins University 64 expressed unknown 16515 Mm.4970 NM_010603 ENSMUSG00000042529 Kcnj12 IRK-2|IRK2|Kir2.2|MB-IRK2 - 11 B2|11 37.96 cM potassium inwardly-rectifying channel, subfamily J, member 12 protein-coding 641366 F630007L15Rik EG641366 - 1 C1.3|1 RIKEN cDNA F630007L15 gene other 380822 Mm.335723 V165-D-J-C mu - - 12|12 F2 IgM variable region other 387586 Mm.227643 NM_199319 ENSMUSG00000071816 Ssxb5 - - X A1.1|X synovial sarcoma, X member B5 protein-coding 102639080 XR_877283 Gm35480 - - 18 B1|18 predicted gene, 35480 ncRNA 61500 D7Mit216 - - 7 49.01 cM DNA segment, Chr 7, Massachusetts Institute of Technology 216 unknown 100035848 Egaq1 - - - early growth adjusted QTL 1 unknown 102640931 Mm.385821 NR_155438 Gm36878 - - 15 F3|15 predicted gene, 36878 ncRNA 383438 Rpl37-ps1 EG383438|Gm9834 - 19|19 A ribosomal protein 37, pseudogene 1 pseudo 102466886 NR_106191 ENSMUSG00000098823 Mir8111 Gm27823|mmu-mir-8111 - 8|8 C2 microRNA 8111 ncRNA 12016 baf - - - b-associated fitness unknown 213402 Mm.211320 NM_001034858 ENSMUSG00000071324 Armc2 2610018I05Rik - 10|10 B2 armadillo repeat containing 2 protein-coding 493040 Cfbw2 - - 6 52.14 cM cystic fibrosis body weight 2 unknown 102637496 XR_390376 Gm34288 - - 4 A1|4 predicted gene, 34288 ncRNA 230379 Mm.45019 NM_139306 ENSMUSG00000038007 Acer2 2410116I05Rik|Asah3l|CRG-L1|maCER2 - 4|4 C4 alkaline ceramidase 2 protein-coding 17629 Ms52 MMS52 - - minisatellites detected by probe MMS52 other 69635 Mm.24103 NM_029653 ENSMUSG00000021559 Dapk1 D13Ucla1|DAP-Kinase - 13 B2|13 32.53 cM death associated protein kinase 1 protein-coding 100101432 Cia34 - - - collagen induced arthritis QTL 34 unknown 320046 Mm.208337 NR_015602 ENSMUSG00000052125 F730043M19Rik - - 12|12 A3 RIKEN cDNA F730043M19 gene ncRNA 674921 Gm13623 - - 2|2 C2 60S ribosomal protein L13-like pseudo 100042539 Mm.418556 NR_033506 Gm3893 - - 4 A5|4 family with sequence similarity 205 pseudogene pseudo 244198 Mm.77425 NM_172907 ENSMUSG00000051041 Olfml1 6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2 - 7|7 E3 olfactomedin-like 1 protein-coding 664875 Gm7384 EG664875 - 6|6 G2 ribosomal protein L11 pseudogene pseudo 112230 Pbw1 - - 1 80.33 cM pentobarbital withdrawal QTL 1 unknown 69395 Mm.47076 1700018P22Rik - - 9|9 A1 RIKEN cDNA 1700018P22 gene protein-coding 100036430 Ethm2 - - - ethanol induced thermoregulation 2 unknown 102633077 XR_375761 Gm30991 - - 3 F1|3 predicted gene, 30991 ncRNA 669171 Gm9443 - - 1 A5|1 predicted gene 9443 pseudo 116977 Morph1 - - 1 4.12 cM morphine antinociception 1 unknown 56421 Mm.273874 NM_019703 ENSMUSG00000021196 Pfkp 1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P - 13|13 A1 phosphofructokinase, platelet protein-coding 723822 NR_029798 ENSMUSG00000065603 Mir218-1 Mirn218-1|mir-218-1 - 5|5 B3 microRNA 218-1 ncRNA 100503690 Mm.101549 XR_106225 Gm19835 - - 11 B1.3|11 31.95 cM predicted gene, 19835 ncRNA 665822 Gm7807 EG665822 - 8 A2|8 ribosomal protein S7 pseudogene pseudo 62200 D15Mit73 - - 15 44.41 cM DNA segment, Chr 15, Massachusetts Institute of Technology 73 unknown 102631981 Mm.394225 NR_153344 Gm30173 - - 3 C|3 predicted gene, 30173 ncRNA 14919 Mm.291816 NM_008192 ENSMUSG00000020890 Gucy2e GC-E|GC1|ROS-GC1 - 11 B3|11 42.51 cM guanylate cyclase 2e protein-coding 19679 Mm.44261 NM_011256 ENSMUSG00000029406 Pitpnm2 NIR3|RDGBA2|Rdgb2|mKIAA1457 - 5 F|5 63.39 cM phosphatidylinositol transfer protein, membrane-associated 2 protein-coding 100503698 Gm19840 - - 15 A2|15 8.73 cM 60S ribosomal protein L5-like pseudo 666060 Mm.24783 NM_001081172 ENSMUSG00000035615 Frmpd1 BC031840|mKIAA0967 - 4|4 B1 FERM and PDZ domain containing 1 protein-coding 102639690 Gm35943 - - 17|17 predicted gene, 35943 pseudo 110740345 LOC110740345 - - 7 E3 B1-559 region downstream of beta(major)-globin gene biological-region 108168506 XM_017318697 Gm21679 - - Y|Y A2 predicted gene, 21679 protein-coding 102633869 LOC102633869 - - - uncharacterized LOC102633869 protein-coding 70857 Mm.403127 4921509J17Rik 6330544N02Rik - 3|3 RIKEN cDNA 4921509J17 gene protein-coding 171191 Mm.377171 NM_134173 ENSMUSG00000115507 Vmn1r24 V1rc18 - 6|6 B3 vomeronasal 1 receptor 24 protein-coding 224761 Mm.246584 NM_177637 ENSMUSG00000037246 H2-M10.5 6.9H - 17 B1|17 19.16 cM histocompatibility 2, M region locus 10.5 protein-coding 69228 Mm.207555 NM_001163475 ENSMUSG00000057691 Zfp746 2810407L07Rik|AI317225|Znf746 - 6|6 B2.3 zinc finger protein 746 protein-coding 435561 Gm5689 EG435561 - 18|18 B3 stefin A pseudogene pseudo 675969 Mm.469834 NM_001102580 ENSMUSG00000091239 Vmn2r76 - - 7|7 D3 vomeronasal 2, receptor 76 protein-coding 27888 D16Ium77 - - 16 36.43 cM DNA segment, Chr 16, Indiana University Medical 77 unknown 83768 Mm.21440 NM_031843 ENSMUSG00000026958 Dpp7 DPPII|Dpp2|QPP - 2|2 A3 dipeptidylpeptidase 7 protein-coding 102638796 XR_381819 ENSMUSG00000112524 Gm35274 - - 12 E|12 predicted gene, 35274 ncRNA 62148 D13Mit90 - - 13 24.5 cM DNA segment, Chr 13, Massachusetts Institute of Technology 90 unknown 100034838 Ltsd8 - - 6 61.92 cM lung tumor shape-determining 8 unknown 105244752 XR_868429 Gm40307 - - 5 C2|5 predicted gene, 40307 ncRNA 100042571 Mm.400264 Gm3907 - - 5 F|5 predicted gene 3907 unknown 100034821 Pcd4ts2 - - 13 21.73 cM p-glycoprotein positive CD4 T cell subset 2 unknown 238323 Mm.44829 NM_146244 ENSMUSG00000019235 Rps6kl1 A830084F09Rik|AW046440 - 12|12 D1 ribosomal protein S6 kinase-like 1 protein-coding 100417639 Gm18729 - - 10|10 B1 vacuolar protein sorting 54 pseudogene pseudo 78451 XR_378126 4930407I02Rik - - 6|6 G3 RIKEN cDNA 4930407I02 gene ncRNA 108168163 XR_001781265 Gm46455 - - 14 C3|14 predicted gene, 46455 ncRNA 101056040 Gm29764 - - 13 D2.2|13 predicted gene, 29764 pseudo 100038450 Mm.274536 Gm12472 - - - predicted gene 12472 unknown 22775 Mm.49441 NM_009577 ENSMUSG00000030393 Zik1 - - 7|7 A1 zinc finger protein interacting with K protein 1 protein-coding 100043260 Gm4321 - - 3|3 G1 ribosomal protein S19 pseudogene pseudo 102633616 XR_384161 Gm31400 - - 15 D2|15 predicted gene, 31400 ncRNA 321006 Mm.440089 NM_001015507 ENSMUSG00000040325 Dcaf1 AI447437|B930007L02Rik|Vprbp|mKIAA0800 - 9|9 F1 DDB1 and CUL4 associated factor 1 protein-coding 102640048 Gm36214 - - 12|12 predicted gene, 36214 ncRNA 72416 Mm.217027 NM_028233 ENSMUSG00000024120 Lrpprc 3110001K13Rik|C76645|Gp130|Lrp130|Lsfc - 17|17 E4 leucine-rich PPR-motif containing protein-coding 102637710 XR_865818 Gm34451 - - 1 H5|1 predicted gene, 34451 ncRNA 70310 Mm.28874 NM_023564 ENSMUSG00000019461 Plscr3 2210403O21Rik|2610037N06Rik|ESTM3|X83310 - 11 B3|11 42.9 cM phospholipid scramblase 3 protein-coding 105245370 XR_873180 Gm40836 - - 13 A3.1|13 predicted gene, 40836 ncRNA 666717 Gm8253 EG666717 - 16 B2|16 predicted gene 8253 pseudo 100504196 Mm.397205 Gm10023 - - 9|9 predicted gene 10023 unknown 110465 Tcrb-C - - - T cell receptor beta, constant region other 216818 XM_011246071 Gm4802 EG216818 - 16|16 B5 predicted gene 4802 protein-coding 628596 NM_001110020 Gm6900 EG628596 - 7|7 A1 eukaryotic translation initiation factor 1 pseudogene pseudo 112159 Daq3 - - 5 44.78 cM directional asymmetry QTL 3 unknown 628893 Mm.477437 NM_001101585 Cldn34-ps EG628893|Gm6927 - X|X B claudin 34, pseudogene protein-coding 320515 A730094L24Rik - - 18|18 RIKEN cDNA A730094L24 gene protein-coding 100042509 Gm20923 - - Y|Y predicted gene, 20923 protein-coding 109958 Hfh5 - - - HNF-3/forkhead homolog 5 protein-coding 53775 D12Mcga1 D12Mcg1 - - DNA segment, Chr 12, Medical College of Georgia 1 unknown 207806 Mm.310566 NM_001029889 ENSMUSG00000068284 Usf3 5530400K22Rik|Gm1779|Gm608|mKIAA2018 - 16|16 B4 upstream transcription factor family member 3 protein-coding 67279 Mm.159496 NM_026068 ENSMUSG00000020801 Med31 3110004H13Rik|CGI-125|l11Jus15 - 11|11 B4 mediator complex subunit 31 protein-coding 620017 Mm.305098 Igkv5-39 23-39|Gm1409 - 6|6 C1 immunoglobulin kappa variable 5-39 other 671064 Gm11225 - - 4|4 C2 3-hydroxyisobutyrate dehydrogenase pseudogene pseudo 110063 Gvh - - - graft versus host regulation unknown 22117 Mm.15312 NM_009437 ENSMUSG00000044986 Tst Rhodanese - 15 E1|15 37.47 cM thiosulfate sulfurtransferase, mitochondrial protein-coding 259037 Mm.223420 NM_147035 ENSMUSG00000045013 Olfr711 MOR103-4 - 7|7 E3 olfactory receptor 711 protein-coding 21255 T(7;13)7Ad T7Ad - - reciprocal translocation, Chr 7 and 13, Adler 7 other 108451 Pmv64 Pmv-64 - - polytropic murine leukemia virus 64 other 665624 Gm7718 EG665624 - 18|18 A2 lactate dehydrogenase A pseudogene pseudo 100042685 Obox4-ps9 Gm3965 - 7 A1|7 oocyte specific homeobox 4, pseudogene 9 pseudo 492973 Hdlq25 - - 8 2.52 cM HDL QTL 25 unknown 258364 Mm.264860 NM_146367 ENSMUSG00000047352 Olfr976 MOR224-10 - 9|9 A5.1 olfactory receptor 976 protein-coding 74632 Mm.32218 4930428F12Rik - - 14|14 E2.3 RIKEN cDNA 4930428F12 gene protein-coding 102635533 Gm32843 - - 3|3 predicted gene, 32843 ncRNA 108167732 XR_001779476 Gm46162 - - 1 G1|1 predicted gene, 46162 ncRNA 78547 Mm.406883 NR_033567 ENSMUSG00000044997 E130304I02Rik - - 7|7 B2 RIKEN cDNA E130304I02 gene ncRNA 100503630 Mm.442203 XR_105439 Gm12002 - - 11 A1|11 7.3 cM predicted gene 12002 ncRNA 102640768 Gm36758 - - 13|13 predicted gene, 36758 pseudo 102638351 Gm34937 - - 7|7 predicted gene, 34937 ncRNA 620790 Mm.447023 Gm14443 - - - predicted gene 14443 unknown 114176 Etohcta10 - - - ethanol conditioned taste aversion 10 unknown 102631712 XR_389427 Gm29982 - - 5 E4|5 predicted gene, 29982 ncRNA 14178 Mm.330557 NM_008008 ENSMUSG00000027208 Fgf7 Kgf - 2|2 F1 fibroblast growth factor 7 protein-coding 22635 Mm.7984 NM_011741 ENSMUSG00000079173 Zan Zan-test - 5 G2|5 76.4 cM zonadhesin protein-coding 53696 D5Pas1 D5PasAP - - DNA segment, Chr 5, Pasteur Institute 1 unknown 105242917 XR_881982 Gm38994 - - 7 B2|7 predicted gene, 38994 ncRNA 102639352 XR_384722 Gm35685 - - 16 B1|16 predicted gene, 35685 ncRNA 544864 Mm.403066 XM_011244243 Gm5785 EG544864 - 12|12 B3 predicted gene 5785 protein-coding 77022 Mm.440259 NR_024720 ENSMUSG00000098090 2700099C18Rik 9430041D22Rik - 17|17 E5 NDC80 homolog, kinetochore complex component pseudogene pseudo 27917 D16Ium48 - - 16 46.83 cM DNA segment, Chr 16, Indiana University Medical 48 unknown 61383 D5Mit117 - - 5 54.35 cM DNA segment, Chr 5, Massachusetts Institute of Technology 117 unknown 66808 Mm.379124 NM_001256489 ENSMUSG00000073158 9030624G23Rik - - 12|12 A1.3 RIKEN cDNA 9030624G23 gene protein-coding 76406 Mm.74996 NM_029598 ENSMUSG00000040340 Tex45 1700019B03Rik - 8|8 A1.1 testis expressed 45 protein-coding 102636015 XR_385024 Gm33207 - - 16 C3.3|16 predicted gene, 33207 ncRNA 17688 Mm.18210 NM_010830 ENSMUSG00000005370 Msh6 AU044881|AW550279|GTBP|Gtmbp - 17 E4|17 57.87 cM mutS homolog 6 protein-coding 61996 D8Mit349 - - 8 47.12 cM DNA segment, Chr 8, Massachusetts Institute of Technology 349 unknown 100417729 Gm18790 - - 9|9 E3.3 poly(A) binding protein, cytoplasmic 1 pseudogene pseudo 100043954 Gm14529 H3mm9 - X|X A1.3 predicted gene 14529 pseudo 108168013 XR_001780643 Gm46362 - - 12 C3|12 predicted gene, 46362 ncRNA 76279 Mm.439931 NM_029562 ENSMUSG00000022445 Cyp2d26 1300006E06Rik - 15|15 E1 cytochrome P450, family 2, subfamily d, polypeptide 26 protein-coding 60881 D7Mit58 - - 7 65.07 cM DNA segment, Chr 7, Massachusetts Institute of Technology 58 unknown 102638341 Gm34929 - - 5|5 predicted gene, 34929 ncRNA 98488 Mm.25856 NM_001033194 ENSMUSG00000041303 Gtf3c3 TF3C-gamma|TFIIIC102 - 1|1 C1.1 general transcription factor IIIC, polypeptide 3 protein-coding 258028 Mm.390163 NM_001011806 ENSMUSG00000052058 Olfr901 MOR162-8 - 9|9 A5.1 olfactory receptor 901 protein-coding 16911 Mm.29187 NM_010723 ENSMUSG00000028266 Lmo4 A730077C12Rik|Crp3|Etohi4 - 3 H2|3 68.61 cM LIM domain only 4 protein-coding 102633070 XR_374992 Gm30986 - - 2 F1|2 predicted gene, 30986 ncRNA 16671 Mm.439738 NM_013570 ENSMUSG00000057723 Krt33b Ha3|Ha4|Krt1-3|mHa3 - 11 D|11 63.37 cM keratin 33B protein-coding 11519 Mm.104155 NM_013458 ENSMUSG00000030000 Add2 2900072M03Rik|add97 - 6 C3-D1|6 37.55 cM adducin 2 (beta) protein-coding 111661 Xlr3 - - - X-linked lymphocyte-regulated 3 complex other 235542 Mm.335386 NM_172144 ENSMUSG00000043154 Ppp2r3a 3222402P14Rik|A730042E07 - 9|9 E4 protein phosphatase 2, regulatory subunit B'', alpha protein-coding 102467435 n-TMcat5 n-Tm5 - 13 A3.1|13 nuclear encoded tRNA methionine 5 (anticodon CAT) tRNA 16855 Mm.210336 NM_010706 ENSMUSG00000053964 Lgals4 gal-4 - 7 B1|7 16.94 cM lectin, galactose binding, soluble 4 protein-coding 52648 D10Ertd533e - - 10 28.51 cM DNA segment, Chr 10, ERATO Doi 533, expressed unknown 109279891 LOC109279891 Mm57 - - VISTA enhancer mm57 biological-region 100043462 Mm.269188 NR_033574 ENSMUSG00000071497 Nutf2-ps1 Gm10333|Ntf2|Nutf2 - 19 D2|19 48.1 cM nuclear transport factor 2, pseudogene 1 pseudo 233810 NM_001278943 ENSMUSG00000051900 Abca16 AY243472 - 7|7 F2 ATP-binding cassette, sub-family A (ABC1), member 16 protein-coding 52261 D8Ertd268e - - 8 28.26 cM DNA segment, Chr 8, ERATO Doi 268, expressed unknown 258654 Mm.377617 NM_146660 ENSMUSG00000075153 Olfr1135 MOR177-2 - 2|2 D olfactory receptor 1135 protein-coding 78919 Mm.286733 NM_030224 ENSMUSG00000018844 Fndc8 4930466G16Rik - 11|11 C fibronectin type III domain containing 8 protein-coding 100039284 Mm.450678 XM_006514419 Gm2137 - - 10 B4|10 predicted gene 2137 protein-coding 192660 Sryip2 Sip2 - - Sry interacting protein 2 protein-coding 101056130 Gm29785 - - 9 A1|9 intraflagellar transport protein 20 homolog pseudo 100126775 Mm.471585 NM_001256051 ENSMUSG00000095886 Esp38 Gm21946 - 17 B1|17 exocrine gland secreted peptide 38 protein-coding 19783 NR_004434 ENSMUSG00000106222 Rprl1 Rmrp2|Rpr|Rprh2 - 6|6 C1 ribonuclease P RNA-like 1 ncRNA 625752 Gm11270 - - 13|13 A3.1 ribosomal protein L29 pseudogene pseudo 13309 Del(4)16H Del16H - - deletion, Chr 4, Harwell 16 other 105245491 XR_873369 Gm40939 - - 13 A5|13 predicted gene, 40939 ncRNA 70517 5730410E19Rik - - 2|2 RIKEN cDNA 5730410E19 gene protein-coding 100040885 XM_006535296 ENSMUSG00000096044 Gm16427 EG666058 - 5|5 E2 predicted gene 16427 protein-coding 668727 Mm.431311 NM_001172588 ENSMUSG00000093973 Mrgpra2a - - 7|7 B3 MAS-related GPR, member A2A protein-coding 19666 Rbpj-ps2 Igkrsbp-ps2|Rbpsuh-ps2 - 4|4 B1 recombination signal binding protein for immunoglobulin kappa J region, pseudogene 2 pseudo 100039129 Gm2056 - - 12 D2|12 eukaryotic translation initiation factor 1A-like 2 pseudogene pseudo 100041573 Gm11945 - - 11|11 A1 predicted gene 11945 pseudo 102423 Mm.24570 NM_172162 ENSMUSG00000032119 Hinfp AA589481|HiNF-P|Mizf - 9|9 A5.2 histone H4 transcription factor protein-coding 72323 Mm.27656 NM_133346 ENSMUSG00000039483 Asb6 2510004M11Rik|AA409356 - 2|2 B ankyrin repeat and SOCS box-containing 6 protein-coding 433316 Mm.39706 LOC433316 - - 1|1 C2 uncharacterized LOC433316 unknown 216001 Mm.27199 NM_144822 ENSMUSG00000020111 Micu1 C730016L05Rik|Calc|Cbara1 - 10|10 B4 mitochondrial calcium uptake 1 protein-coding 102631936 XR_375102 Gm30141 - - 2 G3|2 predicted gene, 30141 ncRNA 100043508 XR_869209 Ptges3-ps Gm9769 - 6|6 C3 prostaglandin E synthase 3, pseudogene pseudo 18744 Mm.8211 NM_008853 ENSMUSG00000034403 Pja1 praja-1 - X C3|X 43.38 cM praja ring finger ubiquitin ligase 1 protein-coding 67204 Mm.377134 NM_026030 ENSMUSG00000074656 Eif2s2 2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B - 2 H1|2 76.89 cM eukaryotic translation initiation factor 2, subunit 2 (beta) protein-coding 102636174 Gm21823 - - Y|Y predicted gene, 21823 protein-coding 93728 Mm.125979 NM_053114 ENSMUSG00000034732 Pabpc5 C820015E17 - X|X E1 poly(A) binding protein, cytoplasmic 5 protein-coding 102634142 Gm16198 - - 3|3 77.02 cM predicted gene 16198 pseudo 109843 Ly23 Ly-23 - - lymphocyte antigen 23 protein-coding 102632516 XR_385538 Gm30571 - - 17 B1|17 predicted gene, 30571 ncRNA 216856 Mm.151293 NM_198862 ENSMUSG00000051790 Nlgn2 NL2|NLG2 - 11|11 B3 neuroligin 2 protein-coding 109397 Oriq3 - - 6 27.41 cM ovulation rate QTL 3 unknown 21318 T(X;7)2Neu T2Neu - - reciprocal translocation, Chr X and 7, Neuhauser-Klaus 2 other 100417554 Gm18686 - - 11|11 B5 small nuclear ribonucleoprotein N pseudogene pseudo 100034992 Lprq2 - - 19 30.3 cM lipoprotein QTL 2 unknown 665182 Gm7530 EG665182 - 10|10 B4 calcyclin binding protein pseudogene pseudo 100216535 NR_028568 Scarna9 Z32 - 9 A2|9 small Cajal body-specific RNA 9 ncRNA 74928 Mm.416643 NR_045353 ENSMUSG00000097370 4930467K11Rik - - 10|10 B4 RIKEN cDNA 4930467K11 gene ncRNA 108169070 XR_001784977 Gm46923 - - 5 G1.3|5 predicted gene, 46923 ncRNA 111748 Tic1 Pim2|pim-2 - - transplantation-specific integration cluster 1 other 12777 Mm.8021 NM_007721 ENSMUSG00000044052 Ccr10 C-C CKR-10|CC-CKR-10|CCR-10|Cmkbr9|Gpr2 - 11 D|11 64.34 cM chemokine (C-C motif) receptor 10 protein-coding 100043348 XM_001480280 Gm10045 - - 17|17 A3.3 predicted pseudogene 10045 protein-coding 100416459 Gm18122 - - 7|7 A1 zinc finger protein 84 pseudogene pseudo 74205 Mm.276016 NM_028817 ENSMUSG00000032883 Acsl3 2610510B12Rik|Acs3|C85929|Facl3|Pro2194 - 1 C4|1 40.84 cM acyl-CoA synthetase long-chain family member 3 protein-coding 105243361 XR_870580 Gm39308 - - 9 A3|9 predicted gene, 39308 ncRNA 108169164 Gm46973 - - 6 F1|6 thymosin beta-10 pseudogene pseudo 320118 Mm.442295 NM_177076 ENSMUSG00000048520 Fbxl13 4921539K22Rik - 5|5 A3 F-box and leucine-rich repeat protein 13 protein-coding 100036027 Bmd33 Bmd26 - - bone mineral density 33 unknown 552901 Mm.443869 LOC552901 - - - uncharacterized LOC552901 unknown 22172 Mm.391420 NR_000040 Tyms-ps - - 10|10 C1 thymidylate synthase, pseudogene pseudo 320775 Mm.434334 NR_028382 ENSMUSG00000051844 B230319C09Rik - - 6|6 C3 RIKEN cDNA B230319C09 gene ncRNA 435392 Gm5670 EG435392 - 14|14 A3 predicted gene 5670 protein-coding 108168517 Gm46707 - - Y C1|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 13405 Mm.275608 NM_007868 ENSMUSG00000045103 Dmd DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke - X C1|X 38.38 cM dystrophin, muscular dystrophy protein-coding 74969 Mm.442508 4930466K18Rik - - 10|10 RIKEN cDNA 4930466K18 gene protein-coding 57814 Mm.24386 NM_021342 ENSMUSG00000047330 Kcne4 AW487937|MiRP3 - 1|1 C4 potassium voltage-gated channel, Isk-related subfamily, gene 4 protein-coding 111878 Iap3rc2 - - - intracisternal A-type particle, U3 region, SINE repeat c-2 other 100035691 Sttr1 - - - startle response 1 unknown 258553 Mm.334989 NM_146560 ENSMUSG00000066897 Olfr872 MOR145-3 - 9|9 A3 olfactory receptor 872 protein-coding 100861667 XM_011251090 ENSMUSG00000094052 Gm21118 - - Y C3|Y predicted gene, 21118 protein-coding 56584 170n17T7 - - - DNA segment, 170n17T7 unknown 100417443 Gm18613 - - X|X A3.3 Casitas B-lineage lymphoma-like 1 pseudogene pseudo 100039669 Gm15103 - - X|X F3 ovary testis transcribed pseudogene pseudo 100628573 NR_039550 ENSMUSG00000106074 Mir3969 mir-3969|mmu-mir-3969|mu-mir-3969 - 5 E1|5 43.56 cM microRNA 3969 ncRNA 19695 Mm.252385 NM_011260 ENSMUSG00000030017 Reg3g AI449515|REG-3-gamma|reg III-gamma - 6|6 C3 regenerating islet-derived 3 gamma protein-coding 625713 Mm.489577 NM_001243017 ENSMUSG00000094592 Gm15140 - - X|X F3 predicted gene 15140 protein-coding 100996933 Mm.394449 NR_131913 Lincred1 - - 2 E2|2 long intergenic non-protein coding RNA of erythroid differentiation 1 ncRNA 259004 Mm.223391 NM_147002 ENSMUSG00000060663 Olfr175-ps1 MOR184-1|MOR184-10P|Olfr174 - 16|16 C1.2 olfactory receptor 175, pseudogene 1 protein-coding 81912 DXUalb1 - - - DNA segment, Chr X, University at Albany 1 unknown 17996 Mm.389247 NM_010889 ENSMUSG00000026950 Neb AI595938 - 2 C1.1|2 29.98 cM nebulin protein-coding 100038458 Plast2b - - - plasma plant sterol 2b unknown 27054 Mm.248492 NM_019787 ENSMUSG00000027429 Sec23b - - 2|2 G1 SEC23 homolog B, COPII coat complex component protein-coding 105244619 XR_867904 Gm40202 - - 4 C5|4 predicted gene, 40202 ncRNA 61034 D8Mit155 - - 8 2.14 cM DNA segment, Chr 8, Massachusetts Institute of Technology 155 unknown 100042996 Mm.480291 NM_001166837 ENSMUSG00000094085 Vmn1r114 Gm10669 - 7|7 A3 vomeronasal 1 receptor 114 protein-coding 100418241 Gm19094 - - 7|7 F5 potassium channel tetramerisation domain containing 18 pseudogene pseudo 13445 Mm.391838 NM_013812 ENSMUSG00000029394 Cdk2ap1 Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12 - 5|5 F CDK2 (cyclin-dependent kinase 2)-associated protein 1 protein-coding 102633526 Mm.134217 NR_154987 Gm31333 - - 12 A2|12 predicted gene, 31333 ncRNA 60321 Mm.141197 NM_021714 ENSMUSG00000030216 Wbp11 2510026P17Rik|D6Wsu113e|Npwbp|SIPP1 - 6 G1|6 66.72 cM WW domain binding protein 11 protein-coding 102636038 Gm33221 - - 15|15 predicted gene, 33221 ncRNA 240215 Mm.135463 NM_172830 ENSMUSG00000024485 Slc4a9 AE4|D630003B07|D630024F24Rik - 18|18 B2 solute carrier family 4, sodium bicarbonate cotransporter, member 9 protein-coding 96989 C79685 - - - expressed sequence C79685 protein-coding 102634531 Mm.421259 XR_382880 Gm32090 - - 13 D2.1|13 predicted gene, 32090 ncRNA 258511 Mm.334306 NM_146518 ENSMUSG00000051051 Olfr523 MOR104-4 - 7|7 F4 olfactory receptor 523 protein-coding 102636890 Mm.109154 NR_151605 ENSMUSG00000086026 Gm12374 - - 4 A5|4 19.88 cM predicted gene 12374 ncRNA 105244202 XR_866449 Gm39852 - - 2 C3|2 predicted gene, 39852 ncRNA 74181 2310024H09Rik - - - RIKEN cDNA 2310024H09 gene protein-coding 102635675 XR_374249 Gm32952 - - 2 B|2 predicted gene, 32952 ncRNA 78031 Mm.243867 NR_040514 ENSMUSG00000086687 4930547E08Rik - - 2|2 E2 RIKEN cDNA 4930547E08 gene ncRNA 12904 Mm.4757 NM_007759 ENSMUSG00000004885 Crabp2 AI893628|Crabp-2|CrabpII - 3 F1|3 cellular retinoic acid binding protein II protein-coding 100042375 Gm3809 - - 1 H5|1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 666774 Rpsa-ps12 Gm13208 - 4|4 E2 ribosomal protein SA, pseudogene 12 pseudo 110409 Nmyc2 Nmyc-2 - - neuroblastoma myc-related oncogene 2 protein-coding 102637389 XR_390897 ENSMUSG00000086437 Gm13021 - - 4 D3|4 71.58 cM predicted gene 13021 ncRNA 210962 Mm.214178 NM_001013750 ENSMUSG00000048411 Gm597 - - 1|1 A5 predicted gene 597 protein-coding 667907 Gm8874 EG667907 - 5 A1|5 anaphase-promoting complex subunit 5 pseudogene pseudo 52082 D7Ertd74e - - - DNA segment, Chr 7, ERATO Doi 74, expressed unknown 62586 D12Mit181 - - 12 59.59 cM DNA segment, Chr 12, Massachusetts Institute of Technology 181 unknown 102633788 XR_379477 Gm31529 - - 9 B|9 predicted gene, 31529 ncRNA 213556 Mm.215159 NM_177606 ENSMUSG00000040852 Plekhh2 AI256725|E030001K05|mKIAA2028 - 17|17 E4 pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 protein-coding 111220 Pgk1-rs5 Pgk-1rs5 - - phosphoglycerate kinase 1, related sequence 5 pseudo 104200 H11 H-11 - - histocompatibility 11 protein-coding 108167435 XR_001778164 Gm45989 - - 7 C|7 predicted gene, 45989 ncRNA 100417807 Gm18840 - - 6|6 F2 complement component 1, r subcomponent A pseudogene pseudo 385049 Gm5374 - - 13 A1|13 Rho-associated coiled-coil containing protein kinase 1 pseudogene pseudo 14962 Mm.653 NM_008198 ENSMUSG00000090231 Cfb AI195813|AI255840|B|Bf|C2|Fb|H2-Bf - 17 B1|17 18.41 cM complement factor B protein-coding 67074 Mm.169924 NM_153395 ENSMUSG00000034602 Mon2 2610528O22Rik|AW495628|Sf21|mKIAA1040 - 10|10 D2 MON2 homolog, regulator of endosome to Golgi trafficking protein-coding 101452 Mm.441381 AA415014 - - - expressed sequence AA415014 unknown 102638674 XM_017319365 LOC102638674 - - 2 H4 zinc finger protein 120-like protein-coding 75916 Mm.394659 NR_045371 ENSMUSG00000105308 4930572K03Rik - - 5|5 G1.2 RIKEN cDNA 4930572K03 gene ncRNA 102634594 XR_881234 Gm32135 - - 4 B1|4 predicted gene, 32135 ncRNA 99426 AW742560 - - - expressed sequence AW742560 unknown 69565 Mm.416888 XR_373578 2310015K22Rik - - 1|1 C5 RIKEN cDNA 2310015K22 gene ncRNA 21194 T(4;In8)36H T36H - - reciprocal translocation, Chr 4 and inverted Chr 8, Harwell 36 other 100809 AU018966 - - - expressed sequence AU018966 unknown 70108 2610001A08Rik - - 11|11 RIKEN cDNA 2610001A08 gene protein-coding 102640567 Gm36601 - - 10|10 predicted gene, 36601 ncRNA 399602 9930024M15Rik - - - RIKEN cDNA 9930024M15 gene protein-coding 100416019 Gm17874 - - 11|11 B4 calponin 2 pseudogene pseudo 436090 Mm.482905 NM_001159652 ENSMUSG00000091735 Gpr62 4933402E03Rik - 9|9 F1 G protein-coupled receptor 62 protein-coding 105247269 XR_882209 Gm42397 Gm44810 - 7 C|7 predicted gene, 42397 ncRNA 100035936 Eppiq1 - - - elevated prepulse inhibition QTL 1 unknown 76131 Mm.371655 NM_029523 ENSMUSG00000028175 Depdc1a 5830484J08Rik|Depdc1 - 3|3 H4 DEP domain containing 1a protein-coding 114670 Mm.426484 4930573O21Rik - - - RIKEN cDNA 4930573O21 gene protein-coding 104441 Tel-rs6 - - - telomere, related sequence 6 protein-coding 67469 Mm.280254 NM_026179 ENSMUSG00000032540 Abhd5 1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2 - 9|9 F4 abhydrolase domain containing 5 protein-coding 219148 Mm.37882 NM_177628 ENSMUSG00000035095 Fam167a A030013D21 - 14|14 D1 family with sequence similarity 167, member A protein-coding 108046 Cdc42l2 - - - cell division cycle 42 homolog (S. cerevisiae)-like 2 protein-coding 105837 Mm.390829 NM_134092 ENSMUSG00000022369 Mtbp AI429604|MDM2BP - 15|15 D1 Mdm2, transformed 3T3 cell double minute p53 binding protein protein-coding 105244013 XR_879787 Gm39705 - - 11 A4|11 predicted gene, 39705 ncRNA 13345 Mm.9474 NM_007855 ENSMUSG00000007805 Twist2 Dermo1|bHLHa39 - 1|1 D twist basic helix-loop-helix transcription factor 2 protein-coding 100039592 Gm10259 - - 3|3 A3 karyopherin (importin) alpha 2 pseudogene pseudo 404328 Mm.377942 NM_207632 ENSMUSG00000083706 Olfr1118 MOR264-22|Olfr1118-ps - 2|2 D olfactory receptor 1118 protein-coding 110021 Dvb11-2 - - - V11<+> T cell deletion 2 protein-coding 66451 Mm.34431 NM_025572 ENSMUSG00000028536 2610528J11Rik TEMP - 4|4 D2.1 RIKEN cDNA 2610528J11 gene protein-coding 102641829 Gm38578 - - 5|5 predicted gene, 38578 protein-coding 60843 D5Mit57 - - - DNA segment, Chr 5, Massachusetts Institute of Technology 57 unknown 100126353 Gm16103 - - 1|1 C1.1 enolase 1, alpha non-neuron pseudogene pseudo 105247195 XR_881534 Gm42334 - - 4 D3|4 predicted gene, 42334 ncRNA 216760 Mm.30501 NM_145426 ENSMUSG00000020522 Mfap3 2610509F16Rik|2700079M14Rik|AW536327 - 11|11 B1.3 microfibrillar-associated protein 3 protein-coding 100861909 NM_001347154 ENSMUSG00000110439 Gm21320 - - 4 B3|4 predicted gene, 21320 protein-coding 112358 Nidd5 - - 2 31.66 cM non-insulin-dependent diabetes mellitus 5 unknown 111717 Mpmv32 Mpmv-32 - - modified polytropic murine leukemia virus 32 other 100034919 Lmblgq6 - - 18 34.41 cM limb length QTL 6 unknown 103341 Mm.441727 AU017962 - - - expressed sequence AU017962 protein-coding 667547 Trav13d-2 EG667547|Gm8695 - 14 C2|14 T cell receptor alpha variable 13D-2 other 102631910 XR_375648 Gm30125 - - 3 C|3 predicted gene, 30125 ncRNA 85161 D4Mit331 - - 4 47.82 cM DNA segment, Chr 4, Massachusetts Institute of Technology 331 unknown 100035825 Fmgty8 - - 9 48.27 cM femur geometry 8 unknown 118451 Mm.294951 NM_080452 ENSMUSG00000035772 Mrps2 1500019M10Rik - 2|2 A3 mitochondrial ribosomal protein S2 protein-coding 231326 Mm.39271 NM_173765 ENSMUSG00000055923 Aasdh A230062G08Rik|A830035E16|Acsf4|U26 - 5|5 C3.3 aminoadipate-semialdehyde dehydrogenase protein-coding 93735 Mm.137403 NM_053116 ENSMUSG00000029671 Wnt16 E130309I19Rik - 6|6 A3.1 wingless-type MMTV integration site family, member 16 protein-coding 53378 Mm.247473 NM_016807 ENSMUSG00000028249 Sdcbp MDA-9|Sycl|syntenin-1 - 4|4 A1 syndecan binding protein protein-coding 100416378 Gm18083 - - 18|18 A1 predicted gene, 18083 pseudo 692168 Igkv15-101 - - 6|6 C1 immunoglobulin kappa chain variable 15-101 pseudo 359855 DXMgc9 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 9 unknown 553089 Mm.445744 LOC553089 - - - uncharacterized LOC553089 unknown 71544 Mm.334955 NM_027823 ENSMUSG00000050730 Arhgap42 9030420J04Rik|BE136619 - 9|9 A1 Rho GTPase activating protein 42 protein-coding 110120391 LOC110120391 - - - VISTA enhancer mm687 biological-region 102638331 XR_380738 Gm34921 - - 10 D1|10 predicted gene, 34921 ncRNA 18489 Mm.2553 NM_011036 ENSMUSG00000071356 Reg3b HIP|PAP1|Pap|REG-III - 6|6 C3 regenerating islet-derived 3 beta protein-coding 66464 Mm.331926 NM_025579 ENSMUSG00000028899 Taf12 20kDa|2810422D08Rik|AW557038|Taf2J - 4|4 D2.3 TATA-box binding protein associated factor 12 protein-coding 78223 Mm.402072 4930577H14Rik - - 4|4 C5 RIKEN cDNA 4930577H14 gene unknown 100125263 Trbc2 BB153276|Tcrb-C2 - 6 19.7 cM|6 B1 T cell receptor beta, constant 2 other 102640196 XM_006502578 Gm36323 - - 3 F1|3 predicted gene, 36323 protein-coding 27224 Mm.27663 NM_013736 ENSMUSG00000028668 Eloa 110kDa|AA408125|Tceb3|Tceb3a - 4|4 D3 elongin A protein-coding 67410 Mm.463005 NM_026136 ENSMUSG00000079093 4930449I24Rik - - 5|5 G3 RIKEN cDNA 4930449I24 gene protein-coding 104728 AA415338 - - - expressed sequence AA415338 unknown 15402 Mm.173 NM_010453 ENSMUSG00000038253 Hoxa5 Hox-1.3 - 6 B3|6 25.4 cM homeobox A5 protein-coding 380850 Mm.439823 NM_001256065 ENSMUSG00000091183 Gm5141 - - 13 B3|13 predicted gene 5141 protein-coding 62109 D1Mit1008 D12Mit63 - 1 8.7 cM DNA segment, Chr 1, Massachusetts Institute of Technology 1008 unknown 258401 Mm.377483 NM_146406 ENSMUSG00000060742 Olfr1076 MOR189-2 - 2|2 D olfactory receptor 1076 protein-coding 62379 D13Mit158 - - 13 2.74 cM DNA segment, Chr 13, Massachusetts Institute of Technology 158 unknown 52064 Mm.290142 NM_026504 ENSMUSG00000041733 Coq5 1810014G04Rik|D5Ertd33e - 5 F|5 56.03 cM coenzyme Q5 methyltransferase protein-coding 100043472 Gm4459 - - 7 F4|7 NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 pseudogene pseudo 723975 NR_030500 ENSMUSG00000106479 Mir721 Mirn721|miRY|mir-721|mmu-mir-721 - 5 G2|5 microRNA 721 ncRNA 53792 D16H21S16 D21S16h - - DNA segment, Chr 16, human D21S16 unknown 62472 D19Mit122 - - 19 45.05 cM DNA Segment, Chr 19 Massachusetts Institute of Technology 122 unknown 73480 Mm.71100 NR_045296 ENSMUSG00000099872 1700074H08Rik CH25-211A23.1 - 13 D2.3|13 RIKEN cDNA 1700074H08 gene ncRNA 50790 Mm.391337 NM_019477 ENSMUSG00000031278 Acsl4 9430020A05Rik|ACS4|AU018108|Facl4|Lacs4 - X|X F2 acyl-CoA synthetase long-chain family member 4 protein-coding 28280 D10Jhu49 - - - DNA segment, Chr 10, Johns Hopkins University 49 unknown 77579 Mm.218233 NM_175260 ENSMUSG00000020900 Myh10 5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005 - 11 B3|11 41.95 cM myosin, heavy polypeptide 10, non-muscle protein-coding 244216 Mm.41038 NM_177362 ENSMUSG00000054716 Zfp771 G630024C07Rik|Znf771 - 7|7 F3 zinc finger protein 771 protein-coding 240054 Mm.390975 NR_152187 D630044L22Rik - - 17|17 A3.3 RIKEN cDNA gene D630044L22 gene ncRNA 100039006 Gm12123 - - 11|11 A4 predicted gene 12123 pseudo 666385 XR_381690 Gm8075 EG666385 - 12|12 C3 predicted gene 8075 ncRNA 12494 Mm.249873 NM_007646 ENSMUSG00000029084 Cd38 ADPRC 1|Cd38-rs1|I-19 - 5 B3|5 23.85 cM CD38 antigen protein-coding 111836 Iapls1-13 - - - intracisternal A particle, lymphocyte specific 1-13 other 110076 Emb-rs3 - - - embigin related sequence 3 protein-coding 319150 NM_178203 ENSMUSG00000069267 Hist1h3b H3-53 - 13|13 A3.1 histone cluster 1, H3b protein-coding 102636500 XR_376553 Gm12829 - - 4 D1|4 52.24 cM predicted gene 12829 ncRNA 100504406 Mm.483191 Gm10617 - - 8|8 65.13 cM predicted gene 10617 unknown 667433 Mm.128913 NR_152176 Gm8630 EG667433 - 19|19 A predicted gene 8630 ncRNA 108167489 Gm45598 - - 7 A1|7 predicted gene 45598 pseudo 105244096 XR_866037 Gm39770 - - 2 A3|2 predicted gene, 39770 ncRNA 109279919 LOC109279919 Mm170 - - VISTA enhancer mm170 biological-region 100035649 Blmpf3 - - 9 43.91 cM bleomycin-induced pulmonary fibrosis 3 unknown 668589 Ighv1-80 Gm16814 - 12|12 F2 immunoglobulin heavy variable 1-80 other 78434 A930009K04Rik - - 17|17 RIKEN cDNA A930009K04 gene protein-coding 100041186 XM_011250766 Gm3189 - - 7|7 A1 predicted gene 3189 protein-coding 102466818 NR_106075 ENSMUSG00000099237 Mir7216 Gm27555|mmu-mir-7216 - 17|17 A3.3 microRNA 7216 ncRNA 101055773 XR_882322 Gm29276 - - Y B|Y predicted gene 29276 ncRNA 100039050 Gm2021 - - 7|7 B3 predicted gene 2021 pseudo 11885 asa - - - anti-sarcolemmal autoantibodies unknown 68165 Mm.490294 NM_001039824 ENSMUSG00000079677 Fdx1l B230118G17Rik|Fdx2 - 9|9 A3 ferredoxin 1-like protein-coding 105244835 XR_869041 Gm40371 - - 6 B2.3|6 predicted gene, 40371 ncRNA 105242605 XR_868818 Gm38773 - - 6 A3.1|6 predicted gene, 38773 ncRNA 61771 D3Mit277 - - 3 32.35 cM DNA segment, Chr 3, Massachusetts Institute of Technology 277 unknown 66997 Mm.491171 NM_025894 ENSMUSG00000020720 Psmd12 1500002F15Rik|AI480719|P55 - 11|11 E1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 protein-coding 328443 Mm.187909 E130202H07Rik Gm809 - 14|14 D2 RIKEN cDNA E130202H07 gene ncRNA 62736 D18Mit181 - - 18 32.15 cM DNA segment, Chr 18, Massachusetts Institute of Technology 181 unknown 27409 Mm.289590 NM_031884 ENSMUSG00000040505 Abcg5 cmp|sterolin-1|trac - 17 E4|17 55.02 cM ATP binding cassette subfamily G member 5 protein-coding 102636069 XM_017313057 Gm33242 - - 8 C2|8 predicted gene, 33242 protein-coding 66854 Mm.43871 NM_029979 ENSMUSG00000022043 Trim35 0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098 - 14|14 D1 tripartite motif-containing 35 protein-coding 21052 T(10;18)18H T18H - - reciprocal translocation, Chr 10 and 18, Harwell 18 other 64050 Mm.233529 NM_026570 ENSMUSG00000020171 Yeats4 4930573H17Rik|B230215M10Rik|GAS41|NuBI-1 - 10|10 D2 YEATS domain containing 4 protein-coding 26408 Mm.6595 NM_008580 ENSMUSG00000071369 Map3k5 7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5 - 10|10 A3 mitogen-activated protein kinase kinase kinase 5 protein-coding 21769 Mm.220972 NM_148926 ENSMUSG00000044477 Zfand3 AW539211|TEG-27|Tex27 - 17|17 A3.3 zinc finger, AN1-type domain 3 protein-coding 27460 10T - - - DNA segment, 10T unknown 101055854 XM_003945320 Gm29733 - - 1 H3|1 predicted gene, 29733 protein-coding 218100 Mm.286454 NM_172586 ENSMUSG00000046351 Zfp322a Znf322|Znf322a - 13|13 A3.1 zinc finger protein 322A protein-coding 259117 Mm.463737 NM_147113 ENSMUSG00000110008 Olfr560 MOR14-1 - 7|7 E3 olfactory receptor 560 protein-coding 414108 Mm.383512 NR_015537 ENSMUSG00000097145 9230114K14Rik - - 5|5 C1 RIKEN cDNA 9230114K14 gene ncRNA 258648 Mm.271493 NM_146654 ENSMUSG00000094200 Olfr237-ps1 MOR261-4|Olfr438 - 6|6 B2.1 olfactory receptor 237, pseudogene 1 protein-coding 114051 Lrnx7 - - - learning-contextual 7 unknown 100043006 Vmn1r-ps73 Gm4163 - 7|7 A3 vomeronasal 1 receptor, pseudogene 73 pseudo 72128 Mm.297854 NM_001004362 ENSMUSG00000060301 2610008E11Rik - - 10|10 C1 RIKEN cDNA 2610008E11 gene protein-coding 105246013 Gm41378 - - 15|15 predicted gene, 41378 ncRNA 238683 Mm.295543 NM_001083890 ENSMUSG00000074849 Spata31d1c 4932441B19Rik|Fam75d1c - 13|13 B3 spermatogenesis associated 31 subfamily D, member 1C protein-coding 359899 DXMgc69 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 69 unknown 110120370 LOC110120370 - - - VISTA enhancer mm757 biological-region 69664 Mm.38303 NM_027157 ENSMUSG00000047253 Krtap1-5 2310043L02Rik|AI592983 - 11|11 D keratin associated protein 1-5 protein-coding 108168452 LOC108168452 - - X F2 histidine-rich glycoprotein-like pseudo 102638778 XR_374283 Gm35260 - - 2 B|2 predicted gene, 35260 ncRNA 668339 Mm.394985 NM_001177365 ENSMUSG00000079479 Gm9112 EG668339 - X|X D predicted gene 9112 protein-coding 107485 Cle H-9 - - closed eyes and microphthalmia unknown 78058 Mm.416952 NR_045391 4930578E11Rik - - 18|18 A2 RIKEN cDNA 4930578E11 gene ncRNA 19188 Mm.371573 NM_011190 ENSMUSG00000079197 Psme2 AA589371|AI788882|PA28b - 14 C3|14 28.19 cM proteasome (prosome, macropain) activator subunit 2 (PA28 beta) protein-coding 359902 DXMgc57 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 57 unknown 100035779 Elsgp4 - - 12 8.49 cM elevated serum gp70 4 unknown 414087 A330068G13Rik - - 7|7 D1 RIKEN cDNA A330068G13 gene unknown 109860 Ads3 Ads-3 - - anti dsDNA antibody 3 protein-coding 102639616 XR_390607 Gm13773 - - 4 B3|4 32.85 cM predicted gene 13773 ncRNA 62456 D14Mit254 - - 14 19.4 cM DNA Segment, Chr 14 Massachusetts Institute of Technology 254 unknown 100417908 Gm17213 - - 3|3 E1 ubiquitin-like modifier activating enzyme 3 pseudogene pseudo 60915 D8Mit96 - - 8 16.6 cM DNA segment, Chr 8, Massachusetts Institute of Technology 96 unknown 103819 AI663975 - - - expressed sequence AI663975 unknown 102635864 Gm29312 - - Y|Y predicted gene 29312 pseudo 20599 Mm.261199 NM_011422 ENSMUSG00000029280 Smr3a AA589601|MSG1|MSG3|Smr1|Smr3 - 5|5 E1 submaxillary gland androgen regulated protein 3A protein-coding 12593 Mm.29002 NM_009881 ENSMUSG00000059288 Cdyl AI325931 - 13 A3.3|13 14.39 cM chromodomain protein, Y chromosome-like protein-coding 72828 Mm.133615 NM_176860 ENSMUSG00000032020 Ubash3b 2810457I06Rik|BB125008|STS-1|TULA-2|p70 - 9|9 A5.1 ubiquitin associated and SH3 domain containing, B protein-coding 52247 D5Ertd236e - - 5 44.32 cM DNA segment, Chr 5, ERATO Doi 236, expressed unknown 622683 Gm6342 EG622683 - 6|6 C3 ribosomal protein S8 pseudogene pseudo 105242581 Mm.31843 XR_868735 BC028471 - - 5|5 G3 cDNA sequence BC028471 ncRNA 100035313 Prtia1 - - 3 42.04 cM pristane induced arthritis 1 unknown 108424 Xmmv37 Env-37|Xmmv-37 - - xenotropic-MCF leukemia virus 37 other 100036273 Hlbsb2 - - 3 72.36 cM hepatic lipase activity in BSB 2 unknown 111989 Insq1 - - - insulin QTL 1 unknown 102637670 Gm34423 - - 1 H1|1 predicted gene, 34423 pseudo 626333 Gm6667 - - 10|10 A1 predicted gene 6667 pseudo 73348 Mm.396218 NR_040649 ENSMUSG00000078492 1700045H11Rik - - 4|4 E2 RIKEN cDNA 1700045H11 gene ncRNA 102636169 Gm33312 - - 12 D2|12 predicted gene, 33312 pseudo 381776 Mm.490764 Igkv2-112 EG381776|Gm5153|hg24 - 6|6 C1 immunoglobulin kappa variable 2-112 other 102640762 XR_381611 Gm36754 - - 12 C1|12 predicted gene, 36754 ncRNA 241765 Gm11453 - - 2|2 H2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100040823 Gm10269 - - 18|18 A2 ribosomal protein L35 pseudogene pseudo 102636723 XR_377691 Gm33716 - - 6 B3|6 predicted gene, 33716 ncRNA 74150 Mm.28654 NM_028787 ENSMUSG00000026342 Slc35f5 1300003P13Rik|AI646727 - 1|1 E2.3 solute carrier family 35, member F5 protein-coding 102637652 Gm28596 - - Y|Y predicted gene 28596 pseudo 100217418 Mm.258912 NR_034050 ENSMUSG00000064604 Snora44 MBI-64 - 4 D2.3|4 small nucleolar RNA, H/ACA box 44 snoRNA 100038633 Mm.151098 Gm10776 - - - predicted gene 10776 unknown 77057 Mm.482203 NM_029858 ENSMUSG00000033855 Ston1 4921524J06Rik|C86231|Salf|Sblf - 17|17 E4 stonin 1 protein-coding 70983 4931409D07Rik - - 4|4 RIKEN cDNA 4931409D07 gene protein-coding 668604 Mm.409032 1700016P03Rik - - 11|11 B5 RIKEN cDNA 1700016P03 gene unknown 102640050 XR_376605 Gm36215 - - 4 D2.1|4 predicted gene, 36215 ncRNA 98813 AA589366 - - - expressed sequence AA589366 unknown 102640694 XR_001784857 Gm36702 - - 5 B3|5 predicted gene, 36702 ncRNA 620137 XM_884524 Mrgprb13 MrgB13 - 7|7 B4 MAS-related GPR, member B13 protein-coding 102631556 XR_391277 Gm28075 - - 7 B2|7 predicted gene 28075 ncRNA 100504007 Mm.441495 NR_040430 ENSMUSG00000086247 Gm15787 - - 5 F|5 53.34 cM predicted gene 15787 ncRNA 11783 Mm.220289 NM_009684 ENSMUSG00000019979 Apaf1 6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413 - 10 C2|10 45.47 cM apoptotic peptidase activating factor 1 protein-coding 384515 Mm.333129 Igkv4-68 Gm1419|Gm151|Gm636|IgVk|aa4 - 6|6 C1 immunoglobulin kappa variable 4-68 other 19418 Mm.248630 NM_009027 ENSMUSG00000021708 Rasgrf2 6330417G04Rik|AW048350|Grf2|Ras-GRF2 - 13 C3|13 47.43 cM RAS protein-specific guanine nucleotide-releasing factor 2 protein-coding 67684 Mm.30927 NM_026313 ENSMUSG00000020863 Luc7l3 3300001P08Rik|Luc7a - 11|11 D LUC7-like 3 (S. cerevisiae) protein-coding 50911 Mm.116711 NM_019393 ENSMUSG00000027714 Exosc9 PM/Scl-75|Pmscl1|RRP45|p5|p6 - 3|3 B exosome component 9 protein-coding 271127 Mm.115970 NM_172053 ENSMUSG00000049538 Adamts16 - - 13 C1|13 35.97 cM a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16 protein-coding 100036186 Ahl3 - - 17 38.15 cM age related hearing loss 3 unknown 668553 Gm9237 EG668553 - 12|12 A1.2 predicted pseudogene 9237 pseudo 55944 Mm.3955 NM_018749 ENSMUSG00000016554 Eif3d 66/67kDa|AA407891|Eif3s7|eIF3p66 - 15|15 E1 eukaryotic translation initiation factor 3, subunit D protein-coding 269211 Mm.178496 NM_178117 BC035947 - - 1|1 C4 cDNA sequence BC035947 other 102639595 Gm21829 - - Y|Y predicted gene, 21829 protein-coding 109376 Lbw5 - - - lupus NZB x NZW 5 unknown 102596 Mm.415699 AI842136 - - - expressed sequence AI842136 protein-coding 791280 Mm.491095 Gm9993 - - 18 A1|18 predicted gene 9993 ncRNA 68727 1110032L06Rik - - 7|7 RIKEN cDNA 1110032L06 gene protein-coding 108168122 n-TStga2 Gm44456|Trnas-uga|n-Ts25 - 13 A3.1|13 nuclear encoded tRNA serine 2 (anticodon TGA) tRNA 75577 Mm.58214 NM_029346 ENSMUSG00000024512 Dynap 2310002L13Rik - 18 E2|18 44.21 cM dynactin associated protein protein-coding 71609 Mm.264255 NM_001033161 ENSMUSG00000031887 Tradd 9130005N23Rik|AA930854 - 8 D3|8 53.04 cM TNFRSF1A-associated via death domain protein-coding 100038346 Mm.489769 B930046K06Rik - - 4|4 RIKEN cDNA B930046K06 gene unknown 24017 Mm.274360 NM_011883 ENSMUSG00000036503 Rnf13 2010001H16Rik|Rzf - 3|3 D ring finger protein 13 protein-coding 78070 Mm.231465 NM_153679 ENSMUSG00000007783 Cpt1c 6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B - 7|7 B3 carnitine palmitoyltransferase 1c protein-coding 666877 Gm8342 EG666877 - 8 A4|8 Fam58a pseudogene pseudo 100504699 Mm.442930 9030425P06Rik - - 3|3 RIKEN cDNA 9030425P06 gene unknown 102641244 XM_011247099 Gm27239 - - 18 E3|18 predicted gene 27239 protein-coding 102637094 LOC102637094 - - 5 C3.2 synaptonemal complex central element protein 2 pseudogene pseudo 104183 Mm.425140 NM_145126 ENSMUSG00000063779 Chil4 Chi3l4|Ym2 - 3|3 F2.2 chitinase-like 4 protein-coding 100504111 Gm11882 - - 4|4 9.69 cM PEST proteolytic signal-containing nuclear protein-like pseudo 20668 Mm.8575 NM_011439 ENSMUSG00000070643 Sox13 AA407916|AW259412|AW540933|Sox-13 - 1|1 E4 SRY (sex determining region Y)-box 13 protein-coding 75264 4930553P13Rik - - 17|17 RIKEN cDNA 4930553P13 gene protein-coding 668150 Gm9005 EG668150 - X|X C3 predicted gene 9005 pseudo 61157 D12Mit37 - - 12 2.59 cM DNA segment, Chr 12, Massachusetts Institute of Technology 37 unknown 105243299 XR_001778657 Gm39260 - - 8 E1|8 predicted gene, 39260 ncRNA 102640030 Gm36200 - - 17|17 predicted gene, 36200 ncRNA 111227 Pgk1-rs6 Pgk-1rs6 - 10 A4|10 phosphoglycerate kinase 1, related sequence 6 pseudo 21419 Mm.137021 NM_009334 ENSMUSG00000025927 Tfap2b AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b - 1|1 A3 transcription factor AP-2 beta protein-coding 105245316 XR_872146 Gm40791 - - 10 D2|10 predicted gene, 40791 ncRNA 73712 Mm.30138 NM_028618 ENSMUSG00000060962 Dmkn 1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36 - 7|7 B1 dermokine protein-coding 78237 Mm.464242 5330439M10Rik - - 10|10 D2 RIKEN cDNA 5330439M10 gene unknown 111472 Xmmv8 Env-8|Xmmv-8 - - xenotropic-MCF leukemia virus 8 other 108428 Xmmv43 Xmmv-43|Xp-2 - - xenotropic-MCF leukemia virus 43 other 67639 Mm.87374 NR_038130 ENSMUSG00000113210 4930474N09Rik - - 12|12 E RIKEN cDNA 4930474N09 gene ncRNA 100039254 Gm2120 - - X|X A6 glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 619311 Mm.417071 A730065G17Rik - - - RIKEN cDNA A730065G17 gene ncRNA 213673 Mm.291979 NM_153117 ENSMUSG00000036275 9530068E07Rik C85061|Kct2 - 11|11 B1.3 RIKEN cDNA 9530068E07 gene protein-coding 234593 Mm.29846 NM_145602 ENSMUSG00000036564 Ndrg4 D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8 - 8|8 D1 N-myc downstream regulated gene 4 protein-coding 111985 Obq3 - - 2 50.66 cM obesity QTL 3 unknown 637900 XR_879905 ENSMUSG00000083016 Gm12618 - - 11|11 B2 predicted gene 12618 unknown 319817 Mm.288785 NM_001100591 ENSMUSG00000075376 Rc3h2 2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164 - 2|2 B ring finger and CCCH-type zinc finger domains 2 protein-coding 171238 Mm.438893 NM_134204 ENSMUSG00000115744 Vmn1r80 V1rg3 - 7|7 A1 vomeronasal 1 receptor 80 protein-coding 53297 41D19 - - - DNA segment, 41D19 Research Genetics unknown 105243422 Mm.335220 XR_870803 Gm39348 - - 9 B|9 predicted gene, 39348 ncRNA 546901 Mm.480276 NM_001166719 ENSMUSG00000091012 Vmn1r34 EG546901|Gm5991 - 6|6 C1 vomeronasal 1 receptor 34 protein-coding 666937 Gm12892 Ck1 - 4|4 D2.2 brain creatine kinase pseudogene pseudo 62674 D15Mit152 - - 15 17.41 cM DNA segment, Chr 15, Massachusetts Institute of Technology 152 unknown 102638660 XR_373345 Gm35171 - - 1 B|1 predicted gene, 35171 ncRNA 73889 Mm.416918 NR_045759 4930413M19Rik - - 14 C1|14 RIKEN cDNA 4930413M19 gene ncRNA 102633346 Gm31193 - - 15|15 predicted gene, 31193 protein-coding 668990 Gm9434 EG668990 - X|X A1.1 mediator of RNA polymerase II transcription, subunit 4 homolog pseudogene pseudo 665129 Gm7507 EG665129 - 6|6 C3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102638175 XR_390383 Gm11816 - - 4 A1|4 4.09 cM predicted gene 11816 ncRNA 102637778 Gm34504 - - 15|15 predicted gene, 34504 ncRNA 102632077 Mm.414345 XR_383620 Gm30246 - - 14 D3|14 predicted gene, 30246 ncRNA 52197 Mm.441753 DXErtd223e - - X 47.36 cM DNA segment, Chr X, ERATO Doi 223, expressed unknown 62198 D15Mit71 - - 15 37.8 cM DNA segment, Chr 15, Massachusetts Institute of Technology 71 unknown 777783 Ighv5-10 Gm10315 - 12|12 F1 immunoglobulin heavy variable 5-10 pseudo 105246021 Gm41383 - - 15|15 predicted gene, 41383 pseudo 626067 XM_011240680 Gm6650 EG626067 - 5|5 A1 predicted gene 6650 protein-coding 102633184 Gm31074 - - 11|11 predicted gene, 31074 pseudo 110446 Mm.293233 NM_144784 ENSMUSG00000032047 Acat1 6330585C21Rik|Acat - 9 A5.3|9 29.12 cM acetyl-Coenzyme A acetyltransferase 1 protein-coding 384962 Gm5368 EG384962 - 9|9 E3.1 high mobility group box 1-like pseudogene pseudo 102466802 NR_106049 ENSMUSG00000099147 Mir7081 Gm27904|mmu-mir-7081 - 9|9 A3 microRNA 7081 ncRNA 231855 Mm.78250 NM_172725 ENSMUSG00000039623 Ap5z1 C330006K01Rik - 5|5 G2 adaptor-related protein complex 5, zeta 1 subunit protein-coding 27999 Mm.490307 NM_138587 ENSMUSG00000029672 Fam3c D6Wsu176e|Ilei - 6 A3.1|6 9.24 cM family with sequence similarity 3, member C protein-coding 61214 D1Mit183 - - 1 42.07 cM DNA segment, Chr 1, Massachusetts Institute of Technology 183 unknown 66663 Mm.224935 NM_025692 ENSMUSG00000032557 Uba5 5730525G14Rik|AW240750|Ube1dc1 - 9|9 F1 ubiquitin-like modifier activating enzyme 5 protein-coding 102633748 Gm31500 - - 2|2 predicted gene, 31500 ncRNA 75770 Mm.274868 NM_029426 ENSMUSG00000053046 Brsk2 4833424K13Rik|SAD-A|SADA - 7|7 F5 BR serine/threonine kinase 2 protein-coding 768332 Mm.234810 C030029H13Rik - - - Riken cDNA C030029H13 gene protein-coding 378937 Mm.289666 NM_198119 ENSMUSG00000033707 Lrrc24 6430402H13Rik - 15|15 D3 leucine rich repeat containing 24 protein-coding 360100 D17Brg10 - - - DNA segment, Chr 17, David E. Bergstrom 10 unknown 110199 Rapop4 - - - radiation-induced apoptosis 4 unknown 108167652 XR_001779169 Gm46112 - - 9 A5.3|9 predicted gene, 46112 ncRNA 320751 Mm.440517 NM_177251 D830014E11Rik - - 5|5 E5 RIKEN cDNA D830014E11 gene unknown 102637914 XR_375323 Gm34608 - - 2 H3|2 predicted gene, 34608 ncRNA 105246108 XR_876056 Gm41450 - - 16 B3|16 predicted gene, 41450 ncRNA 102632143 Gm30295 - - 7|7 predicted gene, 30295 ncRNA 100048941 Gm3203 100041208 - 5|5 A1 zinc finger protein 28 pseudogene pseudo 105244302 Mm.404457 XR_866751 Gm39939 - - 2 F2|2 predicted gene, 39939 ncRNA 108167630 XR_001779015 Gm46095 - - 1 C5|1 predicted gene, 46095 ncRNA 666549 Gm8159 EG666549 - 14|14 A1 predicted gene 8159 pseudo 320019 Mm.353072 NR_015466 ENSMUSG00000097028 Ptgs2os 7530420F21Rik - 1|1 G1 prostaglandin-endoperoxide synthase 2, opposite strand ncRNA 67307 Mm.368563 NM_026085 ENSMUSG00000020072 Pbld2 3110049J23Rik|Mawbp - 10|10 B4 phenazine biosynthesis-like protein domain containing 2 protein-coding 100043770 Gm4635 - - 17 B3|17 predicted gene 4635 other 102467471 n-TRtcg4 n-Tr18 - 11 E2|11 nuclear encoded tRNA arginine 4 (anticodon TCG) tRNA 93702 Mm.247203 NM_033577 ENSMUSG00000103749 Pcdhgb5 - - 18|18 B3 protocadherin gamma subfamily B, 5 protein-coding 61854 D1Mit386 - - 1 48.81 cM DNA segment, Chr 1, Massachusetts Institute of Technology 386 unknown 63832 D11Mit54 - - 11 59.82 cM DNA segment, Chr 11, Massachusetts Institute of Technology 54 unknown 111969 Mltr10 - - - modified polytropic long terminal repeat containing proviral locus 10 other 21282 T(9;11)9Ad T9Ad - - reciprocal translocation, Chr 9 and 11, Adler 9 other 75282 Mm.108522 4930555G07Rik - - 10|10 RIKEN cDNA 4930555G07 gene protein-coding 67348 Mm.54261 NR_136902 ENSMUSG00000100668 1700083H02Rik 100041190|Gm3190 - 12|12 C3 RIKEN cDNA 1700083H02 gene ncRNA 108168422 XR_001782710 Gm46661 - - 19 D3|19 predicted gene, 46661 ncRNA 102640386 XR_373829 Gm36456 - - 1 H6|1 predicted gene, 36456 ncRNA 100628611 NR_039567 ENSMUSG00000093327 Mir5107 mir-5107|mmu-mir-5107|mu-mir-5107 - 18 E1|18 34.41 cM microRNA 5107 ncRNA 320608 Mm.446101 D930023I05Rik - - 11|11 RIKEN cDNA D930023I05 gene protein-coding 102638202 XR_383575 Gm34819 - - 14 D2|14 predicted gene, 34819 ncRNA 100041918 Gm13529 - - 2|2 B predicted gene 13529 pseudo 108440 Xmmv63 Xmmv-63|Xp-22 - - xenotropic-MCF leukemia virus 63 other 62393 D16Mit98 - - 16 13.5 cM DNA segment, Chr 16, Massachusetts Institute of Technology 98 unknown 22025 Mm.107483 NM_011629 ENSMUSG00000005897 Nr2c1 4831444H07Rik|80.3|Eenr|TR2|Tr2-11 - 10 C2|10 48.81 cM nuclear receptor subfamily 2, group C, member 1 protein-coding 110492 Tcra-V3.5 - - - T cell receptor alpha, variable 3.5 other 105246944 XR_880498 Gm42138 - - 5 E5|5 predicted gene, 42138 ncRNA 102640510 Mm.461552 XR_001784998 Gm36551 - - 5 G2|5 predicted gene, 36551 ncRNA 104088 Exa - - - exploratory activity unknown 100035107 Cinda5 - - - cytokine induced activation 5 unknown 102467528 n-TGccc5 n-Tg5 - 3 F2.1|3 nuclear encoded tRNA glycine 5 (anticodon CCC) tRNA 102635384 XR_374017 Gm32741 - - 2 A2|2 predicted gene, 32741 ncRNA 102640079 XR_391260 Gm36234 - - 7 B2|7 predicted gene, 36234 ncRNA 11447 Mm.2811 NM_021600 ENSMUSG00000026251 Chrnd Achr-4|Acrd|L10076 - 1 C5|1 44.07 cM cholinergic receptor, nicotinic, delta polypeptide protein-coding 27428 Mm.46014 NM_015756 ENSMUSG00000029381 Shroom3 AL022960|D5Ertd287e|Shrm|Shrm3 - 5 E2|5 47.29 cM shroom family member 3 protein-coding 21748 NR_001579 ENSMUSG00000064796 Terc mTER|mTR - 3|3 F2.1 telomerase RNA component ncRNA 320055 F830001A07Rik - - 9|9 C RIKEN cDNA F830001A07 gene protein-coding 110974 Kifl1-ps - - - kinesin-like 1, pseudogene pseudo 105244462 Mm.376211 Gm37359 - - 3|3 predicted gene, 37359 ncRNA 108168199 XR_001781438 Gm46483 - - 14 E2.3|14 predicted gene, 46483 ncRNA 105247228 XR_881636 Gm42362 - - 4 E2|4 predicted gene, 42362 ncRNA 193043 Mm.40966 NM_177565 ENSMUSG00000043602 Zfp3 AI854635|B230309J24|Fnp-1|Zfp-3 - 11 B3|11 43.21 cM zinc finger protein 3 protein-coding 71006 Mm.341186 4932703K07Rik - - 12|12 RIKEN cDNA 4932703K07 gene protein-coding 22084 Mm.30435 NM_011647 ENSMUSG00000002496 Tsc2 Nafld|Tcs2 - 17 A3.3|17 12.41 cM tuberous sclerosis 2 protein-coding 224143 Mm.284366 NM_172380 ENSMUSG00000034064 Poglut1 9630046K23Rik|Clp46|Ktelc1|Rumi|wsnp - 16|16 B4 protein O-glucosyltransferase 1 protein-coding 493067 Lbm4 - - - lean body mass 4 unknown 100038556 Mm.387783 NR_046063 ENSMUSG00000107797 Gm10445 - - 6 C3|6 predicted gene 10445 ncRNA 666223 Gm7988 EG666223 - 5|5 B3 cytoskeleton associated protein 2 pseudogene pseudo 22295 Mm.440327 NM_023370 ENSMUSG00000012819 Cdh23 4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v - 10 B4|10 30.11 cM cadherin 23 (otocadherin) protein-coding 406175 Mm.246532 NM_010974 Olfr242 - - 9|9 A5.1 olfactory receptor 242 protein-coding 104342 Blai1 Bla-1|Bla1 - 1|1 proviral insertion Bla 1 protein-coding 17722 ND6 - - - NADH dehydrogenase subunit 6 protein-coding 108403 Srev16 Srev-16 - - SWR/J-RF/J ecotropic provirus 16 other 103569 Mm.441380 AA414993 - - - expressed sequence AA414993 unknown 109721 Rasl6 - - - RAS-like, family 6 protein-coding 102633286 XR_386317 Gm31147 - - 18 E2|18 predicted gene, 31147 ncRNA 19439 Rb(1.15)2Ct Rb2Ct - - Robertsonian translocation, Chr 1 and 15, Cattanach 2 other 73906 Mm.399894 NR_045187 ENSMUSG00000086015 4833417C18Rik - - 11|11 D RIKEN cDNA 4833417C18 gene ncRNA 100417983 Gm20953 - - 9|9 A5.1 family with sequence similarity 60, member A pseudogene pseudo 100041910 Gm3573 - - 14 B|14 predicted gene 3573 protein-coding 258442 Mm.377505 NM_146450 ENSMUSG00000074945 Olfr1314 MOR245-2 - 2|2 E3 olfactory receptor 1314 protein-coding 102637387 Gm34214 - - 2|2 predicted gene, 34214 ncRNA 100502983 Gm11407 - - 4|4 37.89 cM predicted gene 11407 protein-coding 100042990 Gm12089 - - 11|11 A3.3 predicted gene 12089 protein-coding 403171 Mm.389362 NM_207275 ENSMUSG00000037307 Banf2 4930517K23Rik|Baf-L|Baf-like|Gm115 - 2|2 G1 barrier to autointegration factor 2 protein-coding 64296 Mm.276383 NM_022419 ENSMUSG00000007950 Abhd8 0910001L24Rik|AB030191 - 8|8 B3.3 abhydrolase domain containing 8 protein-coding 224460 Gm4828 EG224460|Ppia-ps17_26.1 - 17|17 A1 peptidyl-prolyl cis-trans isomerase A pseudogene 17_26.1 pseudo 320862 Mm.129727 A730054J21Rik - - 1|1 RIKEN cDNA A730054J21 gene protein-coding 108511962 Vav2r5 - - 2 A3 Vav2R5 erythroid cis-regulatory module biological-region 100126466 Trav11 Gm10908 - 14|14 C2 T cell receptor alpha variable 11 other 22599 Mm.41963 NM_011731 ENSMUSG00000025243 Slc6a20b AA986306|Sit1|Slc6a20|XT3|Xtrp3 - 9 F4|9 74.19 cM solute carrier family 6 (neurotransmitter transporter), member 20B protein-coding 78743 9630005C17Rik - - 19|19 RIKEN cDNA 9630005C17 gene protein-coding 102467254 n-TNgtt1 n-Tn1 - - nuclear encoded tRNA asparagine 1 (anticodon GTT) tRNA 100041895 Mm.459949 NM_001177522 ENSMUSG00000065956 Defa37 Gm14850 - 8|8 A2 defensin, alpha, 37 protein-coding 16218 In(1)1Lub-d In(1)1Lub|In1Lub - - inversion, Chr 1, Lubeck 1, distal other 215705 Mm.45275 NM_178408 ENSMUSG00000026972 Arrdc1 AI957342|BC004091 - 2|2 A3 arrestin domain containing 1 protein-coding 100035298 Mcvq1 - - 7 32.84 cM mean corpuscular volume QTL 1 unknown 102632641 Gm30664 - - 11|11 predicted gene, 30664 ncRNA 102640523 XR_386059 Gm36563 - - 18 A1|18 predicted gene, 36563 ncRNA 85108 D12Mit81 - - 12 2.8 cM DNA segment, Chr 12, Massachusetts Institute of Technology 81 unknown 319370 Mm.258466 NM_176902 ENSMUSG00000050628 Ubald2 1110014K08Rik|D030012E24Rik|Fam100b - 11|11 E2 UBA-like domain containing 2 protein-coding 105244052 Gm39734 - - 1|1 predicted gene, 39734 ncRNA 666261 Gm8009 EG666261 - 1|1 B charged multivesicular body protein 3 pseudogene pseudo 102632945 Gm30891 - - 7|7 predicted gene, 30891 ncRNA 73978 Mm.388980 4930442B02Rik - - X|X A1.1 RIKEN cDNA 4930442B02 gene protein-coding 110273 Nba2 - - - New Zealand Black autoimmunity 2 protein-coding 102640169 XR_383495 Gm38524 - - 14 D1|14 predicted gene, 38524 ncRNA 668182 Mm.343993 Rpl13-ps3 EG668182|Gm9026 - 14|14 C3 ribosomal protein L13, pseudogene 3 pseudo 102634710 XR_373294 Gm32229 - - 1 B|1 predicted gene, 32229 ncRNA 100041446 Gm15046 - - X|X F1 predicted gene 15046 protein-coding 233875 Mm.486253 NM_153580 ENSMUSG00000030689 Ino80e AI225782|AI854876|Ccdc85|Ccdc95 - 7|7 F3 INO80 complex subunit E protein-coding 329421 Mm.99648 NM_177376 ENSMUSG00000042064 Myo3b A430065P19Rik - 2|2 C2 myosin IIIB protein-coding 408057 Mm.486711 NR_033220 ENSMUSG00000087594 BC039771 - - 2|2 G1 cDNA sequence BC039771 ncRNA 20430 Mm.37249 NM_011370 ENSMUSG00000030447 Cyfip1 E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1 - 7|7 B5 cytoplasmic FMR1 interacting protein 1 protein-coding 100316682 NR_035439 ENSMUSG00000106344 Mir1892 Mirn1892|mir-1892|mmu-mir-1892 - 12 C1|12 23.46 cM microRNA 1892 ncRNA 667510 XR_031666 ENSMUSG00000106963 Gm8675 EG667510|Gm43297 - 5|5 G3 predicted gene 8675 unknown 791377 Mm.483757 Gm9916 - - - predicted gene 9916 unknown 329906 Mm.54201 C030014L02 - - 4|4 C6 uncharacterized protein C030014L02 protein-coding 100036077 Fmgty6 - - 7 33.88 cM femur geometry 6 unknown 20863 Mm.136573 NM_025288 ENSMUSG00000054905 Stfa3 Stf3 - 16 B3|16 25.55 cM stefin A3 protein-coding 105246640 Gm41899 - - X|X predicted gene, 41899 protein-coding 109759 Pol10 Pol-10 - - viral polymerase 10 protein-coding 102632307 XR_384744 Gm30416 - - 16 B1|16 predicted gene, 30416 ncRNA 628398 Ighv6-4 EG628398|Gm6874 - 12 F1|12 immunoglobulin heavy variable V6-4 other 27689 D11Moh14 - - - DNA segment, Chr 11, KL Mohlke 14 unknown 108167728 XR_001779452 Gm46158 - - 1 E4|1 predicted gene, 46158 ncRNA 544791 Mm.461064 NM_001081250 ENSMUSG00000060180 Myh13 MyHC-eo - 11 B3|11 40.85 cM myosin, heavy polypeptide 13, skeletal muscle protein-coding 111512 Xmmv21 Env-21|Xmmv-21 - - xenotropic-MCF leukemia virus 21 other 19179 Mm.157105 NM_008947 ENSMUSG00000021178 Psmc1 AI325227|P26s4|Rpt2/S4|S4|rpt2 - 12 E|12 50.43 cM protease (prosome, macropain) 26S subunit, ATPase 1 protein-coding 100416829 Gm18285 - - 15|15 B3.1 mbt domain containing 1 pseudogene pseudo 100417695 Gm18766 - - 9|9 E3.1 quinolinate phosphoribosyltransferase pseudogene pseudo 108735 Mm.288369 NM_145512 ENSMUSG00000040848 Sft2d2 2010005O13Rik|AI506168|AW561909|cI-45 - 1|1 H2.2 SFT2 domain containing 2 protein-coding 268512 Mm.31869 NM_178743 ENSMUSG00000039908 Slc26a11 F630021I08Rik - 11|11 E2 solute carrier family 26, member 11 protein-coding 19364 Mm.9286 NM_011235 ENSMUSG00000018841 Rad51d R51H3|Rad51l3|TRAD|Trad-d5 - 11 C|11 50.3 cM RAD51 paralog D protein-coding 56277 Mm.262328 NM_019631 ENSMUSG00000022754 Tmem45a C630002M10Rik|M32486|p19.5 - 16|16 C1.1 transmembrane protein 45a protein-coding 76921 Mm.425335 NM_001177502 ENSMUSG00000079346 1700013D24Rik - - 6|6 F2 RIKEN cDNA 1700013D24 gene protein-coding 15478 Mm.340214 NM_178870 ENSMUSG00000047759 Hs3st3a1 3Ost3a|Hs3st3a - 11 B3|11 40.24 cM heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 protein-coding 17909 Mm.60590 NM_019472 ENSMUSG00000022272 Myo10 AW048724|D15Ertd600e|mKIAA0799|myosin-X - 15 B1|15 9.36 cM myosin X protein-coding 105245883 XR_875023 Gm41265 - - 15 A1|15 predicted gene, 41265 ncRNA 668419 XM_006540496 Scgb2b33 Abpbg33|EG668419|Gm9161 - 7|7 B1 secretoglobin, family 2B, member 33 protein-coding 69477 Mm.245851 2300009N04Rik - - 16|16 RIKEN cDNA 2300009N04 gene protein-coding 105244529 Mm.386944 XR_867567 Gm40123 Gm42754 - 3 F2.3|3 predicted gene, 40123 ncRNA 493055 Fembrs3 - - 10 47.06 cM femur breaking strength 3 unknown 111493 Xmmv54 Xmmv-54|Xp-13 - - xenotropic-MCF leukemia virus 54 other 493100 Fbgl1 Fbg-1 - - fasting blood glucose 1 unknown 105245926 XR_875175 Gm41304 - - 15 B3.1|15 predicted gene, 41304 ncRNA 170647 Onc1 NM2641 - - optic nerve coloboma 1 protein-coding 67849 Mm.23526 NM_026410 ENSMUSG00000024791 Cdca5 2610036L13Rik|AL024086|AW536684|C85404 - 19|19 A cell division cycle associated 5 protein-coding 102467572 n-TKctt29 n-Tk29 - 19 A|19 nuclear encoded tRNA lysine 29 (anticodon TTT) tRNA 18584 Mm.371577 NM_008803 ENSMUSG00000025584 Pde8a AI551852|Pde8 - 7|7 D3 phosphodiesterase 8A protein-coding 100504082 Gm15147 - - X|X 72.38 cM predicted gene 15147 pseudo 109279852 LOC109279852 Mm21 - - VISTA enhancer mm21 biological-region 100035012 Fmgty10 - - 12 55.11 cM femur geometry 10 unknown 100503918 Gm19963 - - 7 F2|7 64.15 cM UPF0124 protein C13orf31 homolog pseudo 23877 Mm.38911 NM_011813 ENSMUSG00000061374 Fiz1 AI790204|mFLJ00416 - 7|7 A1 Flt3 interacting zinc finger protein 1 protein-coding 102638367 Gm34949 - - 2 F1|2 predicted gene, 34949 pseudo 68797 Mm.284246 NM_026840 ENSMUSG00000031595 Pdgfrl 1110039P19Rik|AV013190 - 8|8 A4 platelet-derived growth factor receptor-like protein-coding 623281 NM_001126326 ENSMUSG00000093962 Gm11756 - - 4 C3|4 predicted gene 11756 protein-coding 102635045 XR_377899 Gm32481 - - 6 D3|6 predicted gene, 32481 ncRNA 11370 Mm.18630 NM_017366 ENSMUSG00000018574 Acadvl vlcad - 11 B3|11 42.96 cM acyl-Coenzyme A dehydrogenase, very long chain protein-coding 68027 Mm.357108 NM_026516 ENSMUSG00000024245 Tmem178 2810417M05Rik|Tmem178a - 17|17 E3 transmembrane protein 178 protein-coding 100043074 Mm.213699 XR_382677 Gm4211 - - 13 C3|13 predicted gene 4211 unknown 110986 Ubc-rs1 - - - ubiquitin C, related sequence 1 pseudo 102636706 XR_380557 Gm33704 - - 10 B5.3|10 predicted gene, 33704 ncRNA 100417154 Gm18427 - - 3|3 D crumbs homolog 1 pseudogene pseudo 140489 Mm.134062 NM_080641 ENSMUSG00000045493 Bhlhe23 A930001L02Rik|BETA4|Beta3b|Bhlhb4 - 2 H4|2 103.34 cM basic helix-loop-helix family, member e23 protein-coding 171202 Mm.431971 NM_134184 ENSMUSG00000115792 Vmn1r16 V1rc29 - 6|6 B3 vomeronasal 1 receptor 16 protein-coding 111501 Rnr19-1 Rnr19 - - ribosomal RNA, Chr 19-1 cluster other 12217 Mm.20425 NM_007567 ENSMUSG00000032589 Bsn - - 9 F1|9 59.07 cM bassoon protein-coding 107803 Pick2 - - - protein that interacts with C kinase 2 protein-coding 382943 Gm17741 - - 14|14 E4 ribosomal protein L27A pseudogene pseudo 100113419 Radsvq1 - - - radiation sensitivity QTL 1 unknown 102637437 XR_387445 Gm34244 - - 1 E4|1 predicted gene, 34244 ncRNA 21133 T(2;4)1Ca T1Ca - - reciprocal translocation, Chr 2 and 4, Carter 1 other 61566 DXMit114 - - X 42.82 cM DNA segment, Chr X, Massachusetts Institute of Technology 114 unknown 18332 Mm.222837 NM_147073 ENSMUSG00000066273 Olfr33 MOR11-2|MTPCR33|ORL181 - 7|7 E3 olfactory receptor 33 protein-coding 100462730 Gm11456 - - 2 H3|2 85.24 cM ribosomal protein S27 pseudogene pseudo 233836 Mm.211838 NM_146198 ENSMUSG00000030769 Slc5a11 2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10 - 7|7 F3 solute carrier family 5 (sodium/glucose cotransporter), member 11 protein-coding 100042580 Rpsa-ps6 Gm3913 - 17 A3.3|17 ribosomal protein SA, pseudogene 6 pseudo 62123 D12Mit99 - - 12 52.9 cM DNA segment, Chr 12, Massachusetts Institute of Technology 99 unknown 71679 Mm.371641 NM_027862 ENSMUSG00000034566 Atp5h 0610009D10Rik - 11|11 E2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D protein-coding 258537 Mm.271447 NM_146544 ENSMUSG00000062914 Olfr777 MOR114-9 - 10|10 D3 olfactory receptor 777 protein-coding 61246 D2Mit105 - - 2 61.76 cM DNA segment, Chr 2, Massachusetts Institute of Technology 105 unknown 546472 Gm5948 EG546472 - 10|10 A2 ribosomal protein, large, P0 pseudogene pseudo 102634160 XR_373397 Gm31812 Gm45679 - 1 C1.1|1 predicted gene, 31812 ncRNA 74990 Mm.259464 4930500E03Rik - - 15|15 RIKEN cDNA 4930500E03 gene protein-coding 227619 Mm.270798 NM_001029983 ENSMUSG00000036646 Man1b1 E430019H13Rik|ERMan1|Gm108|MANA-ER - 2|2 A3 mannosidase, alpha, class 1B, member 1 protein-coding 21166 T(3;14)28Ad T28Ad - - reciprocal translocation, Chr 3 and 14, Adler 28 other 668450 Gm9174 EG668450 - 14|14 D2 cell division cycle 26 pseudogene pseudo 72843 Mm.25307 NM_181650 ENSMUSG00000035529 Prdm4 1700031E19Rik|2810470D21Rik|AW552272|SC-1|SC1 - 10|10 C1 PR domain containing 4 protein-coding 71249 Mm.158635 NR_045854 ENSMUSG00000108848 4933430N04Rik - - 8|8 A1.1 RIKEN cDNA 4933430N04 gene ncRNA 212974 Mm.260139 NM_145387 ENSMUSG00000062031 Pgghg 5730511L01Rik|Athl1|BC023151 - 7|7 F5 protein glucosylgalactosylhydroxylysine glucosidase protein-coding 93762 Mm.246803 NM_053124 ENSMUSG00000031715 Smarca5 4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h - 8|8 C2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 17718 ND3 - - - NADH dehydrogenase subunit 3 protein-coding 100040409 Gm14724 - - X|X A7.2 predicted gene 14724 protein-coding 28184 D16Ium23e D16Ium23 - - DNA segment, Chr 16, Indiana University Medical 23, expressed unknown 100504280 Gm20147 - - 18 A1|18 4.65 cM splicing factor, arginine/serine-rich 3-like pseudo 74644 Mm.329311 NM_001271580 4930426D05Rik - - 18|18 A2 RIKEN cDNA 4930426D05 gene protein-coding 16239 In(12)25Rk-d In(12)25Rk|In25Rk - - inversion, Chr 12, Roderick 25, distal other 16539 Mm.71045 NM_181317 ENSMUSG00000050963 Kcns2 E130006J24Rik|Kv9.2 - 15|15 B3.1 K+ voltage-gated channel, subfamily S, 2 protein-coding 22313 Mm.379039 NM_001104566 ENSMUSG00000090315 Vmn2r104 V2r7 - 17|17 A3.2 vomeronasal 2, receptor 104 protein-coding 102636000 XR_382274 Gm33195 - - 13 A4|13 predicted gene, 33195 ncRNA 100416710 Gm18210 - - 8|8 A1.1 zinc finger protein 384 pseudogene pseudo 100416353 Gm18064 - - 13|13 B2 zinc finger protein 930 pseudogene pseudo 100042469 Gm12104 - - 11|11 A4 PDZ and LIM domain protein 1 pseudogene pseudo 102633197 XR_390441 Gm31085 - - 4 A3|4 predicted gene, 31085 ncRNA 20428 sho - - - shorthead unknown 105243748 Gm39554 - - Y|Y predicted gene, 39554 pseudo 100035865 Cxam - - 17 29.73 cM CD86 expression in activated macrophages unknown 100418249 Gm19099 - - 14|14 E2.1 methylmalonic aciduria cblC type, with homocystinuria pseudogene pseudo 100418317 Gm16107 - - 1|1 C1.1 heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene pseudo 100040187 XM_001473625 ENSMUSG00000094838 Gm20828 - - Y|Y A1 predicted gene, 20828 protein-coding 21156 T(2;9)13Ad T13Ad - - reciprocal translocation, Chr 2 and 9, Adler 13 other 667606 Gm8722 EG667606 - X|X B ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 pseudogene pseudo 434089 Mm.101361 Gm10010 - - 6 F3|6 predicted gene 10010 unknown 74160 Mm.352123 1300014J16Rik - - 12|12 RIKEN cDNA 1300014J16 gene protein-coding 105244726 XR_872502 Gm40284 - - 12 A1.1|12 predicted gene, 40284 ncRNA 102633576 Mm.444668 XR_868928 4930412F09Rik - - 6|6 A3.3 RIKEN cDNA 4930412F09 gene ncRNA 12642 Mm.30824 NM_009890 ENSMUSG00000050370 Ch25h AI462618|m25OH - 19|19 C1 cholesterol 25-hydroxylase protein-coding 102635566 XM_017321194 LOC102635566 - - 5 A3 uncharacterized protein C2orf16-like protein-coding 547097 Mm.335796 XM_006530012 B020011L13Rik - - 1|1 E2.3 RIKEN cDNA B020011L13 gene protein-coding 75991 Mm.121285 NM_153567 ENSMUSG00000036087 Slain2 5033405K12Rik|8030444K12Rik|AI596370 - 5|5 C3.2 SLAIN motif family, member 2 protein-coding 104945 AU019868 - - - expressed sequence AU019868 unknown 108168623 XM_017318831 LOC108168623 - - Y D Y-linked testis-specific protein 1-like protein-coding 116818 Frp3 Frp-3 - 12 21.04 cM free running period 3 unknown 54644 Mm.142827 NM_138604 ENSMUSG00000031154 Otud5 AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7 - X A1.1|X 3.54 cM OTU domain containing 5 protein-coding 77744 Mm.23503 NM_175265 ENSMUSG00000022070 Bora 6720463M24Rik|AI317232 - 14|14 E2.2 bora, aurora kinase A activator protein-coding 258628 Mm.271478 NM_146635 ENSMUSG00000045678 Olfr1489 MOR202-19 - 19|19 A olfactory receptor 1489 protein-coding 102197 AL024413 - - - expressed sequence AL024413 unknown 72117 Mm.278726 NM_028108 ENSMUSG00000022698 Naa50 2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San - 16|16 B4 N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding 329954 Mm.79072 NM_177866 ENSMUSG00000048003 Catsper4 4933412L05 - 4|4 D3 cation channel, sperm associated 4 protein-coding 100861977 Gm21370 - - 13 D2.3|13 predicted gene, 21370 pseudo 102634723 Gm32241 - - 4|4 predicted gene, 32241 ncRNA 73276 1700037J18Rik - - 9|9 RIKEN cDNA 1700037J18 gene protein-coding 13055 cy - - - crinkly tail unknown 73687 Mm.455661 2410087M07Rik - - 2|2 RIKEN cDNA 2410087M07 gene protein-coding 114268 Manh4 QTL-SH2.1|QTL-SH3.2 - - mandible shape 4 unknown 100035939 Chlq6 - - 10 45.28 cM circulating hormone level QTL 6 unknown 330192 Mm.4079 NM_177876 ENSMUSG00000066278 Vps37b 2300007F24Rik|AI415429|BC026744 - 5|5 F vacuolar protein sorting 37B protein-coding 102638829 Gm21779 - - Y|Y predicted gene, 21779 protein-coding 108902 Mm.29628 NM_175383 ENSMUSG00000047379 B4gat1 1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT - 19|19 A beta-1,4-glucuronyltransferase 1 protein-coding 109583 Es9 Es-9 - - esterase 9 protein-coding 385674 Mm.244261 NM_001081217 ENSMUSG00000054939 Zfp174 Gm1754 - 16|16 A1 zinc finger protein 174 protein-coding 239318 Mm.308996 NM_177355 ENSMUSG00000049148 Plcxd3 B130016O10Rik - 15|15 A1 phosphatidylinositol-specific phospholipase C, X domain containing 3 protein-coding 27547 D7Zem1 Igf2|MAR1 - - DNA segment, Chr 7, Zemel 1 unknown 73408 Mm.233629 NR_108032 ENSMUSG00000107408 1700065L07Rik - - 6|6 C1 RIKEN cDNA 1700065L07 gene ncRNA 102634329 Gm31937 - - 10|10 predicted gene, 31937 pseudo 20704 Mm.312593 NM_009247 ENSMUSG00000072849 Serpina1e Dom5|PI5|Spi1-5 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 1E protein-coding 66290 Mm.371615 NM_024173 ENSMUSG00000039105 Atp6v1g1 1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10 - 4|4 C1 ATPase, H+ transporting, lysosomal V1 subunit G1 protein-coding 100038706 Mm.334690 NR_040697 ENSMUSG00000099207 Gm10637 - - 8 C3|8 predicted gene 10637 ncRNA 100042946 Mm.374311 NM_001242954 ENSMUSG00000095445 H2al1i Gm14475 - X A1.1|X H2A histone family member L1I protein-coding 18764 Mm.6442 NM_008861 ENSMUSG00000034462 Pkd2 C030034P18Rik|PC2|TRPP2 - 5 E5|5 50.68 cM polycystic kidney disease 2 protein-coding 102467304 n-TEttc5 n-Te15 - 13 A3.1|13 nuclear encoded tRNA glutamic acid 5 (anticodon TTC) tRNA 62243 D17Mit74 - - 17 50.3 cM DNA segment, Chr 17, Massachusetts Institute of Technology 74 unknown 100417479 Gm18636 - - 10|10 B5.3 suppression of tumorigenicity 13 pseudogene pseudo 67290 Mm.248391 NM_026077 ENSMUSG00000025102 3110040N11Rik AI851475 - 7|7 D3 RIKEN cDNA 3110040N11 gene protein-coding 100417317 Gm18528 - - 18|18 E2 crumbs homolog 1 pseudogene pseudo 105242414 XR_878531 Gm38687 - - 1 E4|1 predicted gene, 38687 ncRNA 72355 Mm.33706 NM_197998 ENSMUSG00000064284 Cdpf1 2210021J22Rik - 15|15 E2 cysteine rich, DPF motif domain containing 1 protein-coding 77012 5730596P11Rik - - 16|16 RIKEN cDNA 5730596P11 gene protein-coding 102465563 NR_105899 ENSMUSG00000098704 Mir6934 Gm27523|mmu-mir-6934 - 11|11 E2 microRNA 6934 ncRNA 665665 Gm7739 EG665665 - 12|12 C1 shugoshin-like 1 pseudogene pseudo 233833 Mm.102305 NM_144925 ENSMUSG00000052707 Tnrc6a 2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6 - 7|7 F2-F3 trinucleotide repeat containing 6a protein-coding 20610 Mm.24433 NM_019929 ENSMUSG00000020265 Sumo3 2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1 - 10 C1|10 39.72 cM small ubiquitin-like modifier 3 protein-coding 102467334 n-TLcag2 n-Tl14 - 8 A4|8 nuclear encoded tRNA leucine 2 (anticodon CAG) tRNA 100041548 Mm.489581 NM_001243111 ENSMUSG00000041505 Gm3402 - - 5 G3|5 predicted gene 3402 protein-coding 102638131 Gm34767 - - 1|1 predicted gene, 34767 pseudo 12061 Mm.377078 NM_007539 ENSMUSG00000041347 Bdkrb1 B1BKR|B1R|BKR1|BRADYB1|Bdkrb - 12|12 E bradykinin receptor, beta 1 protein-coding 108168892 XR_001783958 Gm46820 - - 3 F3|3 predicted gene, 46820 ncRNA 105247154 XR_881381 Gm42305 - - 4 C3|4 predicted gene, 42305 ncRNA 105244889 XR_001780606 Gm40417 - - 12 B3|12 predicted gene, 40417 ncRNA 102638542 XR_383580 Gm35079 - - 14 D2|14 predicted gene, 35079 ncRNA 69190 Mm.173826 NM_027727 ENSMUSG00000035765 Dym 1810041M12Rik|4933427L07Rik|C030019K18Rik - 18|18 E2-E3 dymeclin protein-coding 102638751 XR_381705 Gm35240 - - 12 C3|12 predicted gene, 35240 ncRNA 330256 Mm.473165 Gm20559 9530028C05 - 6|6 A1 predicted gene, 20559 unknown 100035375 Advh3 - - - adenovirus induced hyperthyroidism 3 unknown 16492 Mm.142718 NM_021275 ENSMUSG00000042604 Kcna4 Kv1.4 - 2 E3|2 56.12 cM potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 101543 Mm.422738 NM_207212 ENSMUSG00000036459 Wtip - - 7|7 B1 WT1-interacting protein protein-coding 97067 C78651 - - - expressed sequence C78651 unknown 111797 Iapls3-19 - - - intracisternal A particle, lymphocyte specific 3-19 other 15107 Mm.260164 NM_008212 ENSMUSG00000027984 Hadh AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad - 3|3 G3 hydroxyacyl-Coenzyme A dehydrogenase protein-coding 14799 Mm.4920 NM_008165 ENSMUSG00000020524 Gria1 2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1 - 11 B1.3|11 34.51 cM glutamate receptor, ionotropic, AMPA1 (alpha 1) protein-coding 109245080 LOC109245080 - - - Fgf15 5' regulatory region biological-region 61782 D3Mit245 - - 3 35.73 cM DNA segment, Chr 3, Massachusetts Institute of Technology 245 unknown 102637005 Mm.415514 XR_381116 ENSMUSG00000086439 Gm12069 - - 11 A3.2|11 15.3 cM predicted gene 12069 ncRNA 640577 Itln6 - - 1|1 intelectin 6 protein-coding 66366 Mm.141276 NM_025516 ENSMUSG00000005881 Ergic3 2310015B14Rik|AV318804|CGI-54|D2Ucla1|NY-BR-84|Sdbcag84 - 2 H1|2 77.32 cM ERGIC and golgi 3 protein-coding 100526666 Gm21007 - - 12 D3|12 phosphoglycerate kinase 1, pseudogene pseudo 242466 Mm.102904 NM_172867 ENSMUSG00000060206 Zfp462 6030417H05|9430078C22Rik|Gt4-2|Zfpip - 4|4 B2 zinc finger protein 462 protein-coding 226086 Gm4844 EG226086 - 19|19 C1 tektin 5 pseudogene pseudo 110941 Tmevd2 Tmevd-2 - 3 40.14 cM Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 unknown 62722 D18Mit141 - - 18 45.63 cM DNA segment, Chr 18, Massachusetts Institute of Technology 141 unknown 99371 Mm.297192 NM_001085495 ENSMUSG00000074582 Arfgef2 AI463430|AW493672|BIG2|E230011G24Rik - 2|2 H3 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) protein-coding 102640576 Mm.403922 XR_382639 Gm36607 - - 13 C1|13 predicted gene, 36607 ncRNA 100039802 Gm14614 - - X|X A4 predicted gene 14614 pseudo 100174921 Mm.487206 NR_152221 4930505N22Rik - - 19|19 C3 RIKEN cDNA 4930505N22 gene ncRNA 387211 NR_029908 ENSMUSG00000065562 Mir215 Mirn215|mir-215|mmu-mir-215 - 1|1 H5 microRNA 215 ncRNA 102632265 XR_377755 Gm30391 - - 6 C1|6 predicted gene, 30391 ncRNA 791336 Mm.404552 Gm9924 - - - predicted gene 9924 unknown 246157 L1Md-Gf26 GF26 - - L1 repeat, Gf subfamily, member 26 other 328136 Mm.312050 NR_046081 ENSMUSG00000097543 Gm805 - - 12|12 D2 predicted gene 805 ncRNA 100125275 Gm21978 Gm13225|Vmn2r-ps14 - 4|4 E1 vomeronasal receptor Vmn2r-ps14 pseudo 102634752 XR_381416 Gm32259 - - 12 A2|12 predicted gene, 32259 ncRNA 105246754 XR_878674 Gm41996 - - 3 A1|3 predicted gene, 41996 ncRNA 102226 Mm.394850 AU020147 - - - expressed sequence AU020147 protein-coding 110120490 LOC110120490 - - - VISTA enhancer mm1211 biological-region 621414 Gm6223 EG621414 - 9|9 E3.1 transmembrane protein 41B pseudogene pseudo 108168841 LOC108168841 - - 2 H4 zinc finger protein 239-like pseudo 442827 Mm.440341 NM_001002786 ENSMUSG00000064147 Rab44 9830134C10Rik - 17|17 A3.3 RAB44, member RAS oncogene family protein-coding 170677 Mm.156506 NM_130878 ENSMUSG00000021803 Cdhr1 Pcdh21|Prcad|mKIAA1775 - 14|14 B cadherin-related family member 1 protein-coding 102632021 XR_376494 Gm30199 - - 4 C7|4 predicted gene, 30199 ncRNA 360216 Mm.389984 NM_207302 ENSMUSG00000030967 Zranb1 9330160G10Rik|D7Wsu87e|Gm1956|Trabid - 7 F3|7 76.32 cM zinc finger, RAN-binding domain containing 1 protein-coding 226539 Mm.28125 NM_172644 ENSMUSG00000026709 Dars2 5830468K18Rik|aspRS - 1|1 H2.1 aspartyl-tRNA synthetase 2 (mitochondrial) protein-coding 112347 Feml3 - - - femur length in high growth mice 3 unknown 21458 Tcp10 Tcp-10 - 17|17 A2-B t-complex protein 10 other 97361 C77717 - - - expressed sequence C77717 unknown 78250 Mm.444612 NM_030068 ENSMUSG00000037801 Iqch 4921504K03Rik - 9|9 C IQ motif containing H protein-coding 19665 Rbpj-ps1 Igkrsbp-ps1|Rbpsuh-ps1 - 4|4 B1 recombination signal binding protein for immunoglobulin kappa J region, pseudogene 1 pseudo 108636 Mltr5 - - - modified polytropic long terminal repeat containing proviral locus 5 other 100504950 XM_017318951 Gm20997 - - 6|6 predicted gene, 20997 protein-coding 791390 Gm16498 - - - predicted gene 16498 unknown 102637762 Gm21812 - - Y|Y predicted gene, 21812 protein-coding 111376 Mtv8 Mtv-16|Mtv-8 - - mammary tumor virus locus 8 other 102640011 XR_868742 Gm36187 - - 5 G3|5 predicted gene, 36187 ncRNA 100039069 Gm15180 - - 1|1 C4 predicted gene 15180 pseudo 22761 Mm.3105 NM_009569 ENSMUSG00000049577 Zfpm1 FOG|Fog1 - 8|8 E1 zinc finger protein, multitype 1 protein-coding 100124356 Traj33 Gm16666 - 14|14 C2 T cell receptor alpha joining 33 other 100036398 Imab7 - - - intermale aggressive behavior 7 unknown 100035600 Egq2 - - - early growth QTL 2 unknown 15422 Mm.207062 NM_010464 ENSMUSG00000001655 Hoxc13 - - 15 F3|15 57.99 cM homeobox C13 protein-coding 72392 Mm.258324 NM_028223 ENSMUSG00000013495 Tmem175 3010001K23Rik|AI504381|mTMEM175 - 5|5 F transmembrane protein 175 protein-coding 105246509 Mm.365171 XR_877607 Gm41790 - - 18 E3|18 predicted gene, 41790 ncRNA 100043402 Gm4415 - - 2 E3|2 predicted gene 4415 protein-coding 74427 Mm.491208 NM_028932 ENSMUSG00000021890 Eaf1 4933403C17Rik|AI666536 - 14|14 B ELL associated factor 1 protein-coding 626410 Mm.389417 NR_040559 ENSMUSG00000106461 Gm20755 - - 3|3 B predicted gene, 20755 ncRNA 51819 D17Tu32 - - - DNA segment, Chr 17, Tubingen 32 unknown 15530 Mm.273662 NM_008305 ENSMUSG00000028763 Hspg2 AI852380|Pcn|Plc|per - 4 D3|4 69.93 cM perlecan (heparan sulfate proteoglycan 2) protein-coding 654467 Mm.432031 NR_002885 Gm10052 XM_001481145 - 9 F4|9 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 723837 NR_029789 ENSMUSG00000065544 Mir32 Mirn32|mir-32|mmu-mir-32 - 4|4 B3 microRNA 32 ncRNA 269116 Mm.326702 NM_182716 ENSMUSG00000026442 Nfasc AA387016|D430023G06Rik|NF|mKIAA0756 - 1 E4|1 57.42 cM neurofascin protein-coding 626048 Rps12-ps16 EG626048|Gm6646 - X|X E3 ribosomal protein S12, pseudogene 16 pseudo 102638527 Gm35070 - - Y|Y predicted gene, 35070 ncRNA 57278 Mm.29236 NM_020486 ENSMUSG00000002980 Bcam 1200005K12Rik|B-CAM|Gplu|Lu - 7|7 A3 basal cell adhesion molecule protein-coding 238011 Mm.244114 NM_001030291 ENSMUSG00000046697 Enpp7 Alk-SMase|Gm254 - 11|11 E2 ectonucleotide pyrophosphatase/phosphodiesterase 7 protein-coding 26913 Mm.41812 NM_012014 ENSMUSG00000069227 Gprin1 GRIN1|Z16 - 13|13 B1 G protein-regulated inducer of neurite outgrowth 1 protein-coding 100503652 Mm.439941 NR_040406 ENSMUSG00000096981 Gm16845 - - 9 A3|9 8.23 cM predicted gene, 16845 ncRNA 100035026 Ablp - - 15 45.02 cM absorbance of eye lens protein unknown 102466639 NR_105806 ENSMUSG00000098886 Mir6385 Gm28021|mmu-mir-6385 - 9|9 B microRNA 6385 ncRNA 102633934 XR_373395 Gm31636 - - 1 C1.1|1 predicted gene, 31636 ncRNA 16242 In(13)31Rk-p In(13)31Rk|In31Rk - - inversion, Chr 13, Roderick 31, proximal other 666156 Gm7954 EG666156 - 14|14 B predicted gene 7954 protein-coding 100038414 Mm.483679 Gm10735 - - 13 D2.2|13 predicted gene 10735 unknown 102632877 Gm30839 - - 13 D2.2|13 predicted gene, 30839 pseudo 676433 Gm9678 - - 3|3 F2.2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5 pseudogene pseudo 105246261 XR_876752 Gm41569 - - 17 B1|17 predicted gene, 41569 ncRNA 14265 Mm.3451 NM_008031 ENSMUSG00000000838 Fmr1 FMRP|Fmr-1 - X A7.1|X 34.83 cM fragile X mental retardation syndrome 1 protein-coding 70846 Mm.84118 NM_001037743 ENSMUSG00000046782 Ttc6 4921506M07Rik|EG639426|Gm69|Gm9813 - 12|12 C1 tetratricopeptide repeat domain 6 protein-coding 53619 Mm.480461 NM_016916 ENSMUSG00000067787 Blcap AI462828|Bc10 - 2 H1|2 78.4 cM bladder cancer associated protein protein-coding 100040671 Mm.360540 NM_001177714 ENSMUSG00000079410 Gm2897 - - 14 A1|14 predicted gene 2897 protein-coding 105244805 Gm40350 - - 5|5 predicted gene, 40350 ncRNA 224576 Mm.469854 NM_001104568 ENSMUSG00000091656 Vmn2r106 EG224576 - 17|17 A3.2 vomeronasal 2, receptor 106 protein-coding 105211 AI663969 - - - expressed sequence AI663969 unknown 93879 Mm.348052 NM_053133 ENSMUSG00000045876 Pcdhb8 Pcdhb5C|PcdhbH - 18|18 B3 protocadherin beta 8 protein-coding 636756 Gm7189 EG636756 - X|X A4 glyceraldehyde phosphate dehyrogenase pseudogene pseudo 13260 Del(10)21H Del21H - - deletion, Chr 10, Harwell 21 other 68183 Mm.104919 NM_026602 ENSMUSG00000005687 Bcas2 6430539P16Rik|AI132645|C76366|C80030 - 3|3 F2.2 breast carcinoma amplified sequence 2 protein-coding 102638453 Gm21783 - - Y|Y predicted gene, 21783 protein-coding 239570 Mm.151748 NM_001033337 ENSMUSG00000035944 Ttc38 9030019H09 - 15|15 E2 tetratricopeptide repeat domain 38 protein-coding 629897 Ighv1-36 Gm16715 - 12|12 F2 immunoglobulin heavy variable 1-36 other 79189 Apc-ps1 Gm15822 - 5|5 C3.3 adenomatosis polyposis coli, pseudogene 1 pseudo 105245817 XR_874817 Gm41207 - - 14 D2|14 predicted gene, 41207 ncRNA 98828 Mm.181490 NM_133837 ENSMUSG00000039128 Cdc123 AA959893|G431001I09Rik - 2|2 A1 cell division cycle 123 protein-coding 100504186 Mm.347709 NM_176985 C230013L11Rik - - 17|17 A3.3 RIKEN cDNA C230013L11 gene unknown 100417795 Gm18832 - - 17|17 E4 aldo-keto reductase family 1, member B8 pseudogene pseudo 244187 Mm.377263 NM_207249 ENSMUSG00000047225 Olfr684 GA_x6K02T2PBJ9-7786441-7785503|MOR40-8P - 7|7 E3 olfactory receptor 684 protein-coding 102640921 LOC102640921 - - 13 B3 non-histone chromosomal protein HMG-17 pseudogene pseudo 105242622 XR_377507 Gm13846 - - 6 A3.3|6 12.57 cM predicted gene 13846 ncRNA 629554 Mm.428353 XR_870740 Gm6980 - - 9 A5.3|9 predicted gene 6980 unknown 102022 Mm.212983 NM_133960 ENSMUSG00000055730 Ces2a 9130231C15Rik|AI266984|Ces6 - 8|8 D3 carboxylesterase 2A protein-coding 230991 Mm.29083 NM_178699 ENSMUSG00000074738 Fndc10 B930041F14Rik|MNCb-3966 - 4|4 E2 fibronectin type III domain containing 10 protein-coding 100034787 Bdln3 - - 2 71.02 cM body length 3 unknown 780798 Ighv5-19 - - 12|12 F1 immunoglobulin heavy variable V5-19 pseudo 101568 Mm.28816 NM_133945 ENSMUSG00000002205 Vrk3 AI428238 - 7|7 B3 vaccinia related kinase 3 protein-coding 626373 Rpl23a-ps11 EG626373|Gm6672|Ropl23a-ps11 - 7|7 B1 ribosomal protein L23A, pseudogene 11 pseudo 22720 Mm.16650 NM_009562 ENSMUSG00000046311 Zfp62 - - 11 B1.2|11 29.23 cM zinc finger protein 62 protein-coding 102634695 Gm29624 - - Y|Y predicted gene 29624 ncRNA 100126226 Mm.347934 NM_001201323 ENSMUSG00000067613 Krt83 5430421N21Rik - 15|15 F2 keratin 83 protein-coding 751548 NR_030493 ENSMUSG00000096098 Mir713 Mirn713|mir-713|mmu-mir-713 - 13 B3|13 microRNA 713 ncRNA 17686 Mm.343101 NM_010829 ENSMUSG00000014850 Msh3 D13Em1|Rep-3|Rep3 - 13 C3|13 47.63 cM mutS homolog 3 protein-coding 76787 Mm.277235 NM_029741 ENSMUSG00000003863 Ppfia3 2410127E16Rik - 7|7 B3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 protein-coding 102467586 n-TPagg6 n-Tp6 - 6 A3.3|6 nuclear encoded tRNA proline 6 (anticodon AGG) tRNA 100418224 Gm19081 - - 2|2 E1 THAP domain containing, apoptosis associated protein 2 pseudogene pseudo 414114 Mm.406370 XR_379932 D330037F02Rik - - 9 F3|9 RIKEN cDNA D330037F02 gene ncRNA 668871 Gm9410 EG668871 - 17 E5|17 cullin 4A pseudogene pseudo 230664 Best4-ps Vmd2l2p - 4|4 D1 bestrophin 4, pseudogene pseudo 105242773 XR_869436 Gm38899 - - 6 F3|6 predicted gene, 38899 ncRNA 102637221 XR_001785289 Gm34090 - - 6 D1|6 predicted gene, 34090 ncRNA 104171 Gtl12 - - - gene trap locus 12 unknown 71775 Mm.18802 NM_027918 ENSMUSG00000033688 1300017J02Rik Ica|mICA - 9|9 F1 RIKEN cDNA 1300017J02 gene protein-coding 751527 NR_029815 ENSMUSG00000076256 Mir19b-1 Mirn19b-1|mir-19b-1 - 14 E4|14 microRNA 19b-1 ncRNA 112415 Mm.145362 NM_198417 ENSMUSG00000057093 Zfp607b C030039L03Rik - 7|7 A3 zinc finger protein 607B protein-coding 432442 Mm.485937 NM_018747 ENSMUSG00000039166 Akap7 6430401D08|AI662165|AKAP15|Akap18|BB170514 - 10|10 A4 A kinase (PRKA) anchor protein 7 protein-coding 102637013 Gm21809 - - Y|Y predicted gene, 21809 protein-coding 62401 D18Mit146 - - 18 6.36 cM DNA segment, Chr 18, Massachusetts Institute of Technology 146 unknown 102637022 XR_377925 Gm33934 - - 6 D3|6 predicted gene, 33934 ncRNA 100125396 Femwf1 - - - femur work to failure 1 unknown 100415919 Gm12795 - - 4|4 ribosomal protein L9 pseudogene pseudo 75856 Mm.416955 4930580E04Rik - - 5|5 A3 RIKEN cDNA 4930580E04 gene protein-coding 72002 Mm.22983 NM_028051 ENSMUSG00000039878 Slc39a5 1810013D05Rik|2010205A06Rik|Zip5 - 10|10 D3 solute carrier family 39 (metal ion transporter), member 5 protein-coding 93929 D16Jhu68 410E12.SP6 - - DNA segment, Chr 16, Johns Hopkins University 68 unknown 100124576 Vmn2r-ps18 - - 4|4 E1 vomeronasal 2, receptor, pseudogene 18 pseudo 723854 NR_029918 ENSMUSG00000065433 Mir370 Mirn370|mir-370|mmu-mir-370 - 12|12 F1 microRNA 370 ncRNA 102639363 XR_390401 Gm35693 - - 4 A1|4 predicted gene, 35693 ncRNA 101055709 Mm.389828 Zfp264 - - 7|7 A1 zinc finger protein 264 pseudo 100039452 XM_001472852 ENSMUSG00000092036 Gm2244 - - 14 A3|14 predicted gene 2244 protein-coding 239933 Mm.478807 NM_001163105 ENSMUSG00000090515 Krtap27-1 EG239933 - 16|16 C3.3 keratin associated protein 27-1 protein-coding 234724 Mm.28110 NM_146214 ENSMUSG00000001670 Tat - - 8 D3|8 57.38 cM tyrosine aminotransferase protein-coding 216166 Mm.17613 NM_183152 ENSMUSG00000035486 Plk5 6330514A18Rik - 10|10 C1 polo like kinase 5 protein-coding 109535 Tanidd3 - - 16 2.71 cM TallyHo associated non-insulin dependent diabetes mellitus 3 unknown 623131 Mm.172160 NM_001081294 ENSMUSG00000058741 Prr19 EG623131 - 7|7 A3 proline rich 19 protein-coding 100038695 Mm.362929 Gm10555 - - - predicted gene 10555 unknown 100862341 XM_003688967 ENSMUSG00000094361 Btbd35f30 Gm21657 - X A3.1|X BTB domain containing 35, family member 30 protein-coding 100502931 Gm15821 - - 17|17 17.98 cM predicted gene 15821 unknown 246164 L1Md-Gf71 GF71 - - L1 repeat, Gf subfamily, member 71 other 17279 Mm.268668 NM_010790 ENSMUSG00000035683 Melk AI327312|MPK38|mKIAA0175 - 4 B1|4 23.46 cM maternal embryonic leucine zipper kinase protein-coding 108167844 XR_001779915 Gm9884 - - 1|1 A5 predicted gene 9884 ncRNA 404580 Mm.421328 AL117821 - - 10|10 C1 expressed sequence AL117821 protein-coding 171254 Mm.377208 NM_134220 ENSMUSG00000095125 Vmn1r198 V1ri3 - 13|13 A3.1 vomeronasal 1 receptor 198 protein-coding 14456 Mm.3982 NM_019521 ENSMUSG00000031451 Gas6 Gas-6 - 8 A1.1|8 6.06 cM growth arrest specific 6 protein-coding 108168358 XM_017317774 Gm46608 - - 17 A1|17 predicted gene, 46608 protein-coding 232089 Mm.167232 NM_144917 ENSMUSG00000056698 Elmod3 AI844780|C330008I15Rik|RBM29|Rbed1 - 6|6 C1 ELMO/CED-12 domain containing 3 protein-coding 102637126 Mm.388021 XR_381683 Gm34016 - - 12 C3|12 predicted gene, 34016 ncRNA 100042855 Mm.479515 NM_001165950 ENSMUSG00000069385 Gm10267 Vtlgl1 - 18|18 B3 predicted gene 10267 protein-coding 13797 Mm.245394 NM_010132 ENSMUSG00000043969 Emx2 Pdo - 19 D3|19 56.28 cM empty spiracles homeobox 2 protein-coding 108167746 XR_001779535 Gm46172 - - 1 H3|1 predicted gene, 46172 ncRNA 75059 4930511C11Rik - - 11|11 RIKEN cDNA 4930511C11 gene protein-coding 77869 E130112B07Rik - - 13|13 RIKEN cDNA E130112B07 gene protein-coding 60925 D9Mit53 - - 9 56.61 cM DNA segment, Chr 9, Massachusetts Institute of Technology 53 unknown 77724 6030460B20Rik - - 1|1 RIKEN cDNA 6030460B20 gene protein-coding 100124496 NR_030535 ENSMUSG00000094184 Mir743b Mirn743b|mir-743b - X A7.1|X microRNA 743b ncRNA 102638564 XR_385699 Gm35098 - - 17 E1.1|17 predicted gene, 35098 ncRNA 492894 Egrd1 - - 5 54.65 cM early growth rate, direct effect 1 unknown 246079 Mm.171224 NM_139219 ENSMUSG00000047390 Defb9 BD-9 - 8|8 A2 defensin beta 9 protein-coding 102636990 XR_384074 Gm33908 - - 15 B3.2|15 predicted gene, 33908 ncRNA 100502787 Gm19373 - - X|X 72.53 cM predicted gene, 19373 pseudo 78174 Mm.60690 NM_030052 ENSMUSG00000049387 Cox7b2 4930503B16Rik - 5|5 C3.1 cytochrome c oxidase subunit VIIb2 protein-coding 217882 Mm.23689 NM_001024602 ENSMUSG00000072825 Cep170b AI466840|AW555464|Kiaa0284|mKIAA0284 - 12 F1|12 61.2 cM centrosomal protein 170B protein-coding 107815 Mm.159173 NM_133194 ENSMUSG00000000037 Scml2 4932420G07Rik - X|X F4 Scm polycomb group protein like 2 protein-coding 27776 94B16R - - - DNA segment, 94B16R (Research Genetics) unknown 667631 Gm8738 EG667631 - 11|11 E1 predicted gene 8738 pseudo 100417327 Gm11661 - - 11|11 E1 TROVE domain family, member 2 pseudogene pseudo 14402 Mm.8004 NM_008071 ENSMUSG00000033676 Gabrb3 A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3 - 7 B5|7 33.53 cM gamma-aminobutyric acid (GABA) A receptor, subunit beta 3 protein-coding 628722 Vmn2r-ps98 - - 13|13 B3 vomeronasal 2, receptor, pseudogene 98 pseudo 626034 Gm6645 EG626034 - X|X F3 transmembrane and tetratricopeptide repeat containing 3 pseudogene pseudo 100043075 Gm10179 - - 7 A1|7 ring finger protein 141 pseudogene pseudo 15361 Mm.4438 NM_016660 ENSMUSG00000046711 Hmga1 AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy - 17 A3.3|17 14.5 cM high mobility group AT-hook 1 protein-coding 629147 Mm.57415 NM_001134697 ENSMUSG00000069372 Ctxn3 - - 18 D3|18 cortexin 3 protein-coding 102639990 Gm28530 - - 9 E3.3|9 predicted gene 28530 pseudo 545369 Gm5835 EG545369 - 1|1 F ribosomal protein L4 pseudogene pseudo 102634919 XR_378845 Gm32389 Gm45372 - 8 A2|8 predicted gene, 32389 ncRNA 104065 Mgpt1 Mgpt-1 - - gpt-insertion 1 protein-coding 73990 Mm.399240 NR_045352 ENSMUSG00000112654 4930455C13Rik - - 10|10 A3 RIKEN cDNA 4930455C13 gene ncRNA 100416114 Gm17923 - - 14|14 D3 protocadherin 8 pseudogene pseudo 13821 Mm.20852 NM_013510 ENSMUSG00000027624 Epb41l1 4.1N|Epb4.1l1|NBL1|mKIAA0338 - 2 H1|2 77.39 cM erythrocyte membrane protein band 4.1 like 1 protein-coding 102635230 XR_378849 Gm32621 - - 8 A2|8 predicted gene, 32621 ncRNA 383901 Gm5279 EG383901 - 3|3 F2.3 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide pseudogene pseudo 100503659 Mm.485395 NM_015761 ENSMUSG00000035640 Cbarp 9630008F14|Dos|R29144/1 - 10|10 C1 calcium channel, voltage-dependent, beta subunit associated regulatory protein protein-coding 100035408 Chlq10 - - - circulating hormone level QTL 10 unknown 71834 Mm.44186 NM_027947 ENSMUSG00000026788 Zbtb43 1700010E06Rik|Zfp297b|mKIAA0414 - 2|2 B zinc finger and BTB domain containing 43 protein-coding 433502 Mm.376157 NM_001012725 ENSMUSG00000070531 Wfdc6b WAP6b|Wfdc6 - 2|2 H3 WAP four-disulfide core domain 6B protein-coding 27839 D2Dcr12 - - - DNA segment, Chr 2, Derry C. Roopenian 12 unknown 114079 Axtofa6 - - - anxiety-open field activity 6 unknown 53136 274m9-T7 - - - DNA segment, 274m9-T7 unknown 258776 Mm.223207 NM_146780 ENSMUSG00000060503 Olfr715 MOR260-1 - 7|7 E3 olfactory receptor 715 protein-coding 61793 D2Mit422 - - 2 70.07 cM DNA segment, Chr 2, Massachusetts Institute of Technology 422 unknown 320229 Mm.187582 NR_152127 9530052C20Rik - - 3|3 H1 RIKEN cDNA 9530052C20 gene ncRNA 114353 Skl5 - - 11 42.94 cM skeletal size (tail length) 5 unknown 327781 Mm.111063 A130033P14 - - 10|10 C1 uncharacterized protein A130033P14 protein-coding 51940 D1Ertd705e - - 1 4.88 cM DNA segment, Chr 1, ERATO Doi 705, expressed unknown 319727 Mm.215552 NR_015586 A330035P11Rik - - 14|14 E5 RIKEN cDNA A330035P11 gene ncRNA 61755 D4Mit248 - - 4 52.81 cM DNA segment, Chr 4, Massachusetts Institute of Technology 248 unknown 66520 Mm.29615 NM_183258 2610001J05Rik C79299 - 6|6 A1 RIKEN cDNA 2610001J05 gene protein-coding 108167866 XR_001780130 Gm46261 - - 11 B1.3|11 predicted gene, 46261 ncRNA 105247445 LOC105247445 - - - T-cell surface glycoprotein YE1/48 protein-coding 224022 Mm.298878 NM_144852 ENSMUSG00000022756 Slc7a4 AI853530 - 16|16 A3 solute carrier family 7 (cationic amino acid transporter, y+ system), member 4 protein-coding 100504145 Mm.100443 NR_152105 ENSMUSG00000097851 Platr30 Gm17580 - 3 F2.1|3 41.77 cM pluripotency associated transcript 30 ncRNA 73281 Mm.396196 XR_373818 1700023G09Rik - - 1|1 H5 RIKEN cDNA 1700023G09 gene ncRNA 54218 Mm.11132 NM_019420 ENSMUSG00000067370 B3galt4 Gal-T2|Galt2 - 17|17 B1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 protein-coding 258459 Mm.377513 NM_146467 ENSMUSG00000047702 Olfr1388 MOR256-28 - 11|11 B1.2 olfactory receptor 1388 protein-coding 102635361 XR_375902 Gm32720 - - 3 F2.2|3 predicted gene, 32720 ncRNA 102634963 Gm32419 - - Y|Y predicted gene, 32419 protein-coding 19724 Mm.7892 NM_009055 ENSMUSG00000031706 Rfx1 AI047719|AI385641 - 8 C2|8 40.28 cM regulatory factor X, 1 (influences HLA class II expression) protein-coding 54393 Mm.32191 NM_019439 ENSMUSG00000024462 Gabbr1 GABAB1|GABAbR1|bM573K1.1 - 17 B1|17 19.16 cM gamma-aminobutyric acid (GABA) B receptor, 1 protein-coding 67739 Mm.28955 NM_026353 ENSMUSG00000081534 Slc48a1 4930570C03Rik - 15 F1|15 solute carrier family 48 (heme transporter), member 1 protein-coding 102638002 Mm.420783 XR_874585 LOC102638002 - - 14 C1 uncharacterized LOC102638002 ncRNA 108167825 XR_001779824 ENSMUSG00000090230 LOC108167825 - - 10 C1 uncharacterized LOC108167825 ncRNA 547057 Gm6019 EG547057 - X|X A1.1 spindlin family, member 2 pseudogene pseudo 77548 8030487O14Rik - - 5|5 RIKEN cDNA 8030487O14 gene protein-coding 108169146 XR_001785266 LOC108169146 - - 6 B3 uncharacterized LOC108169146 ncRNA 100417098 Gm18397 - - 17|17 A3.3 vomeronasal 2, receptor 10 pseudogene pseudo 16506 Mm.335968 NM_008423 ENSMUSG00000009731 Kcnd1 1110037K09Rik|Kca2-1|Kv4.1|Shal|Shal1|mShal1 - X A1.1|X 3.53 cM potassium voltage-gated channel, Shal-related family, member 1 protein-coding 108169120 LOC108169120 - - 5 B3 cytochrome c-like pseudo 30872 C76453 - - - EST C76453 protein-coding 62567 D12Mit134 - - 12 62.45 cM DNA segment, Chr 12, Massachusetts Institute of Technology 134 unknown 68227 Mm.443301 1700082C02Rik - - 17|17 RIKEN cDNA 1700082C02 gene protein-coding 112287 Exq2 - - 1 58.27 cM exploratory and excitability QTL 2 unknown 72375 2210412B16Rik - - 5|5 RIKEN cDNA 2210412B16 gene protein-coding 230396 Mm.246592 NM_177347 ENSMUSG00000063376 Ifna13 - - 4 C4|4 42.02 cM interferon alpha 13 protein-coding 62273 D19Mit27 - - 19 38.15 cM DNA segment, Chr 19, Massachusetts Institute of Technology 27 unknown 105245869 Mm.460408 NR_131969 ENSMUSG00000090534 LOC105245869 - - 14 E4 uncharacterized LOC105245869 ncRNA 13473 Dp(9)14H Dp14H - - duplication, Chr 9, Harwell 14 other 100416745 Gm18224 - - 6|6 G1 zinc finger protein 707 pseudogene pseudo 100035900 Htas8 - - - hypothermia due to alcohol sensitivity 8 unknown 27804 502H20F - - - DNA segment, 502H20F (Research Genetics) unknown 667766 Mm.29385 NR_028278 Gm8801 - - 17 B1|17 protein phosphatase 1, regulatory subunit 10 pseudogene pseudo 100039565 Gm11227 - - 4|4 C2 predicted gene 11227 pseudo 19642 Rb(X.2)2Ad Rb2Ad - - Robertsonian translocation, Chr X and 2, Adler 2 other 110399 Evi20 - - - ecotropic viral integration site 20 protein-coding 381107 Mm.141275 NM_001008973 ENSMUSG00000045036 Tmem232 E130009J12Rik|Gm940|Tes13-L|Tes13-S - 17|17 E1.1 transmembrane protein 232 protein-coding 102638553 Gm16228 - - 5|5 48.46 cM predicted gene 16228 pseudo 102632924 XR_388886 Gm30875 - - 11 B5|11 predicted gene, 30875 ncRNA 102467368 n-TPtgg1 n-Tp11 - - nuclear encoded tRNA proline 1 (anticodon TGG) tRNA 105407 BB189686 - - - expressed sequence BB189686 unknown 666298 Gm8032 EG666298 - 14|14 B predicted gene 8032 protein-coding 102636397 XR_874990 Gm33473 - - 14 E5|14 predicted gene, 33473 ncRNA 359993 DXMgc131 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 131 unknown 19773 Mm.5033 NM_011272 ENSMUSG00000039097 Rln1 Rln|rlx - 19 C1|19 23.83 cM relaxin 1 protein-coding 435848 Gm5717 EG435848 - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide B36 pseudogene pseudo 108339 Mtv28 Mtv-28 - - mammary tumor virus locus 28 other 61055 D5Mit332 - - 5 8.48 cM DNA segment, Chr 5, Massachusetts Institute of Technology 332 unknown 634710 Gm11692 - - 11|11 E2 predicted gene 11692 pseudo 62438 D17Mit246 - - 17 4.92 cM DNA segment, Chr 17, Massachusetts Institute of Technology 246 unknown 73902 Mm.32009 NM_175204 ENSMUSG00000072423 Psmb11 5830406J20Rik|beta5t - 14|14 C2 proteasome (prosome, macropain) subunit, beta type, 11 protein-coding 70900 Mm.73124 NM_183290 ENSMUSG00000049902 4921517D22Rik - - 13|13 B2 RIKEN cDNA 4921517D22 gene protein-coding 11432 Mm.45570 NM_007387 ENSMUSG00000002103 Acp2 Acp-2|LAP - 2 E1|2 50.54 cM acid phosphatase 2, lysosomal protein-coding 73326 Mm.458692 NR_045182 ENSMUSG00000086796 4932702P03Rik 1700047I16Rik - 13|13 A3.1 RIKEN cDNA 4932702P03 gene ncRNA 102634780 Mm.417209 XR_385775 Gm32282 - - 17 E2|17 predicted gene, 32282 ncRNA 105244638 Gm40215 - - 4|4 predicted gene, 40215 ncRNA 100861698 XR_001780979 Gm21145 - - 13 B3|13 predicted gene, 21145 ncRNA 73980 Mm.399200 XR_865423 4930444A19Rik - - 1|1 C1.2 RIKEN cDNA 4930444A19 gene unknown 105244183 Gm39836 - - 2|2 predicted gene, 39836 ncRNA 102636361 XR_377916 Gm33448 - - 6 D3|6 predicted gene, 33448 ncRNA 105246042 XR_875666 Gm41402 - - 15 F1|15 predicted gene, 41402 ncRNA 97561 D630038D15Rik C86287 - - RIKEN cDNA D630038D15 gene protein-coding 105243115 Gm39126 - - 8|8 predicted gene, 39126 ncRNA 100503007 Mm.238087 NR_152223 Gm19500 - - 18 D3|18 32.06 cM predicted gene, 19500 ncRNA 62830 D13Mit230 - - 13 63.2 cM DNA segment, Chr 13, Massachusetts Institute of Technology 230 unknown 13336 Del(Y)Sxrb-p - - - deletion, Chr Y, Sxrb, Rlll, Cattanach, proximal breakpoint other 70913 Mm.476887 4921523L03Rik - - - RIKEN cDNA 4921523L03 gene protein-coding 102635588 XR_382897 Gm32881 - - 13 D2.1|13 predicted gene, 32881 ncRNA 545481 Mm.125371 NM_001145015 ENSMUSG00000074625 Arhgap40 C20orf95|Gm14203 - 2|2 H1 Rho GTPase activating protein 40 protein-coding 269224 Mm.379454 NM_080850 ENSMUSG00000026274 Pask mKIAA0135 - 1|1 D PAS domain containing serine/threonine kinase protein-coding 258313 Mm.463727 NM_146316 ENSMUSG00000060523 Olfr726 MOR246-4 - 14|14 C1 olfactory receptor 726 protein-coding 100040644 Gm14592 - - X|X A5 splicing factor 3a, subunit 3 pseudogene pseudo 327749 Mm.428887 NR_153349 Gm5079 C230040G06 - 10 B2|10 predicted gene 5079 ncRNA 102635581 XR_376132 Gm32875 - - 3 H1|3 predicted gene, 32875 ncRNA 665972 Gm7871 EG665972 - 1|1 H3 predicted gene 7871 pseudo 114316 Taste8 - - - taste bitterness sensitivity 8 unknown 51896 D2Ertd357e - - 2 9.09 cM DNA segment, Chr 2, ERATO Doi 357, expressed unknown 102635575 Mm.403314 NR_151604 ENSMUSG00000087110 Gm11264 - - 4 C3|4 38.4 cM predicted gene 11264 ncRNA 105243877 XR_872271 Gm39603 - - 11 A3.1|11 predicted gene, 39603 ncRNA 100035032 Arigm2 - - - anti-RBC IgM antibodies 2 unknown 625102 Gm6553 EG625102 - 17|17 A1 G protein-coupled receptor 31, D17Leh66c region pseudogene pseudo 102633484 XR_380619 Gm31298 - - 10 C1|10 predicted gene, 31298 ncRNA 54189 Mm.7087 NM_019400 ENSMUSG00000020817 Rabep1 Rab5ep|rabaptin-5|rabaptin-5alpha - 11 B4|11 43.21 cM rabaptin, RAB GTPase binding effector protein 1 protein-coding 625638 Mm.379091 NM_001081672 ENSMUSG00000078235 Fam43b - - 4|4 D3 family with sequence similarity 43, member B protein-coding 240595 Mm.269759 NM_183179 ENSMUSG00000047298 Kcnv2 KV11.1 - 19|19 C1 potassium channel, subfamily V, member 2 protein-coding 106780809 Obox4-ps3 Gm27180 - 7 A1|7 oocyte specific homeobox 4, pseudogene 3 pseudo 100885835 NR_049196 ENSMUSG00000093757 Mir5623 Gm26068|mir-5623|mmu-mir-5623 - 19|19 D2 microRNA 5623 ncRNA 383538 Gm5258 EG383538 - 1|1 C5 predicted gene 5258 pseudo 62971 D15Mit237 - - 15 34.08 cM DNA Segment, Chr 15, Massachusetts Institute of Technology 237 unknown 66374 Mm.383824 NM_025521 ENSMUSG00000020133 2310011J03Rik AI452186|AW545358 - 10|10 C1 RIKEN cDNA 2310011J03 gene protein-coding 100418345 Gm14589 - - X|X A5 tumor necrosis factor, alpha-induced protein 1 (endothelial) pseudogene pseudo 14789 Mm.35708 NM_013534 ENSMUSG00000023191 P3h3 BC016431|Grcb|Leprel2 - 6 F2|6 59.17 cM prolyl 3-hydroxylase 3 protein-coding 76703 Mm.34692 NM_029706 ENSMUSG00000011463 Cpb1 0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870 - 3 A2|3 6.29 cM carboxypeptidase B1 (tissue) protein-coding 16408 Mm.1618 NM_008400 ENSMUSG00000030830 Itgal (p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21 - 7 F3|7 69.44 cM integrin alpha L protein-coding 67668 4930563N14Rik - - 13|13 RIKEN cDNA 4930563N14 gene protein-coding 237858 Mm.127006 NM_177709 ENSMUSG00000046275 Tusc5 C130069F04Rik|DSPB1|Lost1 - 11|11 B5 tumor suppressor candidate 5 protein-coding 60892 D7Mit98 - - 7 60.49 cM DNA segment, Chr 7, Massachusetts Institute of Technology 98 unknown 100316840 NR_035455 ENSMUSG00000088752 Mir1934 mir-1934|mmu-mir-1934 - 11 B3|11 42.86 cM microRNA 1934 ncRNA 16065 Mm.359198 Igh-VS107 IgG|IgH|VhNZA6 - 12 F1|12 immunoglobulin heavy chain (S107 family) other 735274 NR_030454 ENSMUSG00000106252 Mir684-1 Mirn684-1 - 2 C3|2 microRNA 684-1 ncRNA 102635275 Mm.270304 Bach2it1 Gm11932 - 4|4 14.02 cM BTB and CNC homology 2, intronic transcript 1 protein-coding 620079 Mm.378379 NR_038012 ENSMUSG00000100553 Gm17751 - - 1|1 C4 predicted gene, 17751 ncRNA 22068 Mm.325086 NM_013838 ENSMUSG00000031997 Trpc6 AV025995|LLHWJM002|LLHWJM003|LLHWJM004|TRP-6|Trrp6|mtrp6 - 9 A1|9 2.46 cM transient receptor potential cation channel, subfamily C, member 6 protein-coding 69060 Mm.20407 NM_026925 ENSMUSG00000046008 Pnlip 1810007A24Rik|PL|PTL - 19 D2|19 54.46 cM pancreatic lipase protein-coding 268291 Mm.295212 NM_001146349 ENSMUSG00000063760 Rnf217 AU016819|Ibrdc1 - 10|10 A4 ring finger protein 217 protein-coding 106856 AA522005 - - - expressed sequence AA522005 unknown 433486 Mm.422661 NM_001097977 ENSMUSG00000079006 Gm14151 - - 2|2 G3 predicted gene 14151 protein-coding 414121 Mm.482537 NR_015542 ENSMUSG00000059146 E430016F16Rik - - 7|7 D2 RIKEN cDNA E430016F16 gene ncRNA 665649 Gm7730 EG665649 - 8|8 B3.3 predicted gene 7730 pseudo 735278 NR_030482 ENSMUSG00000076163 Mir701 Mirn701|mir-701|mmu-mir-701 - 5 F|5 microRNA 701 ncRNA 105246231 XR_876658 Gm41543 - - 17 A3.3|17 predicted gene, 41543 ncRNA 56636 Mm.143736 NM_020013 ENSMUSG00000030827 Fgf21 - - 7|7 B3 fibroblast growth factor 21 protein-coding 360070 D17Jcs85 - - - DNA segment, Chr 17, John C. Schimenti 85 unknown 100417936 Gm17190 - - 13|13 D1 predicted gene 17190 pseudo 100534358 LOC100534358 - - 4|4 B2 single stranded DNA binding protein 4 pseudogene pseudo 102632969 XR_390997 Gm30911 - - 4 E2|4 predicted gene, 30911 ncRNA 71057 Mm.50817 NR_040682 ENSMUSG00000106013 4933402J10Rik - - 5|5 C2 RIKEN cDNA 4933402J10 gene ncRNA 54382 Mm.302175 NM_018756 ENSMUSG00000096284 Tcstv1 Lo1 - 13 D2.3|13 2-cell-stage, variable group, member 1 protein-coding 320471 Mm.387165 D230022J07Rik - - 2|2 RIKEN cDNA D230022J07 gene unknown 13237 Mm.436573 NM_007850 ENSMUSG00000074440 Defa3 Defa27|Defcr-3|Defcr3 - 8|8 A2 defensin, alpha, 3 protein-coding 100038753 Gm10143 EyeLinc3 - 19|19 predicted gene 10143 ncRNA 105247202 XR_881559 Gm42341 - - 4 E1|4 predicted gene, 42341 ncRNA 102466913 NR_105946 ENSMUSG00000098297 Mir6980 Gm27969|mmu-mir-6980 - 18|18 B3 microRNA 6980 ncRNA 433107 Mm.353122 NM_001177529 ENSMUSG00000092043 Esp6 EG433107|Esp5|Gm5494 - 17|17 B2 exocrine gland secreted peptide 6 protein-coding 105120 Mm.417700 NR_045083 ENSMUSG00000114780 AI197445 - - 13|13 D2.1 expressed sequence AI197445 ncRNA 108167837 Gm46245 - - 1 F|1 predicted gene, 46245 pseudo 258996 Mm.377782 NM_146994 ENSMUSG00000074995 Olfr201 MOR182-2 - 16|16 C1.3 olfactory receptor 201 protein-coding 14221 Mm.29730 NM_010218 ENSMUSG00000075012 Fjx1 - - 2|2 E2 four jointed box 1 protein-coding 64176 Mm.273082 NM_153579 ENSMUSG00000053025 Sv2b A830038F04Rik|AI850768|mKIAA0735 - 7|7 D1 synaptic vesicle glycoprotein 2 b protein-coding 53626 Mm.379070 NM_016889 ENSMUSG00000068154 Insm1 IA-1 - 2|2 G1 insulinoma-associated 1 protein-coding 27498 3P18S - - - DNA segment, 3P18S unknown 434178 Mm.333810 NM_001309388 ENSMUSG00000092416 Zfp141 - - 7|7 B3 zinc finger protein 141 protein-coding 102634841 XM_011245785 Gm38469 - - 15 F1|15 predicted gene, 38469 protein-coding 62693 D17Mit115 - - 17 23.56 cM DNA segment, Chr 17, Massachusetts Institute of Technology 115 unknown 14841 Mm.42045 NM_010353 ENSMUSG00000050107 Haspin Gsg2 - 11 B4|11 45.25 cM histone H3 associated protein kinase protein-coding 735284 NR_030489 ENSMUSG00000076143 Mir708 Mirn708|mmu-mir-708 - 7 E1|7 microRNA 708 ncRNA 77035 Mm.307239 NM_029842 ENSMUSG00000030752 Kdm8 3110005O21Rik|Jmjd5 - 7|7 F3 lysine (K)-specific demethylase 8 protein-coding 23942 Mm.25339 NM_011842 ENSMUSG00000071646 Mta2 AW550797|Mata1l1|Mta1l1|mmta2 - 19|19 A metastasis-associated gene family, member 2 protein-coding 243433 Igkv17-127 EG243433|Gm4967|bw20 - 6|6 C1 immunoglobulin kappa variable 17-127 other 628924 Mszf81 - - 13|13 B3 mszf81 protein-coding 225845 Mm.274810 NM_139269 ENSMUSG00000060675 Pla2g16 AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3 - 19|19 A phospholipase A2, group XVI protein-coding 71790 Mm.218844 NM_023628 ENSMUSG00000015702 Anxa9 1110003P15Rik|2310069F17Rik - 3|3 F2.1 annexin A9 protein-coding 100035137 Tcdel1 - - - T cell clonal deletion 1 unknown 100036286 W3q4 - - - weight 3 weeks QTL 4 unknown 69642 Mm.35008 NM_027150 ENSMUSG00000032355 Mlip 2310046A06Rik|AI931782|CIP - 9|9 D muscular LMNA-interacting protein protein-coding 100040559 Gm2840 - - 5|5 E3 predicted gene 2840 pseudo 105244925 XM_011244246 Gm40447 - - 12 C3|12 predicted gene, 40447 protein-coding 67859 Mm.46431 NM_026415 ENSMUSG00000036731 Cysrt1 2310002J15Rik|AV023762 - 2|2 A3 cysteine rich tail 1 protein-coding 74280 Mm.273343 NR_045965 ENSMUSG00000099639 1700084F23Rik 1700003E18Rik|4930589D02Rik - 13|13 C1 RIKEN cDNA 1700084F23 gene ncRNA 62700 D17Mit132 - - 17 51.8 cM DNA segment, Chr 17, Massachusetts Institute of Technology 132 unknown 108671 Mm.2871 NM_134081 ENSMUSG00000021811 Dnajc9 5330419I01Rik|AU020082 - 14|14 A3 DnaJ heat shock protein family (Hsp40) member C9 protein-coding 723817 NR_029902 ENSMUSG00000065480 Mir133b Mirn133b|mir-133b - 1|1 A4 microRNA 133b ncRNA 100043594 Gm4540 - - 3 F2.2|3 predicted gene 4540 pseudo 111353 Mmv19 Mmv-19 - - MCF endogenous virus 19 other 100043614 Mm.480298 NM_001166849 ENSMUSG00000095962 Vmn1r137 Gm4551 - 7 A3|7 vomeronasal 1 receptor 137 protein-coding 98578 AU022804 - - - expressed sequence AU022804 unknown 52310 D7Ertd344e - - 7 57.62 cM DNA segment, Chr 7, ERATO Doi 344, expressed unknown 100416009 Gm17868 - - 1|1 H2.3 TSPY-like 3 pseudogene pseudo 102632630 Gm30656 - - 13|13 predicted gene, 30656 ncRNA 61650 D7Mit301 - - 7 51.2 cM DNA segment, Chr 7, Massachusetts Institute of Technology 301 unknown 23969 Mm.4926 NM_011861 ENSMUSG00000040276 Pacsin1 A830061D09Rik|H74|mKIAA1379|syndapin - 17|17 A3.3 protein kinase C and casein kinase substrate in neurons 1 protein-coding 27852 D0Nds10 - - - DNA segment, Nuffield Department of Surgery 10 unknown 100124398 Traj4 Gm16915 - 14|14 C2 T cell receptor alpha joining 4 other 110187 Mm.155750 NM_178308 ENSMUSG00000066586 Scgb2b26 Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4 - 7 B1|7 19.38 cM secretoglobin, family 2B, member 26 protein-coding 229927 Mm.290600 NM_139148 ENSMUSG00000037033 Clca3b Clca4 - 3|3 H2 chloride channel accessory 3B protein-coding 27482 52T - - - DNA segment, 52T unknown 105501 Mm.28771 NM_134076 ENSMUSG00000040997 Abhd4 1110035H23Rik|AI429574|Abh4 - 14|14 C2 abhydrolase domain containing 4 protein-coding 72343 Mm.450322 2600002B07Rik AI586157 - 8|8 RIKEN cDNA 2600002B07 gene protein-coding 277089 S100a11-ps EG277089|Gm5068 - 12|12 C3 S100 calcium binding protein A11, pseudogene pseudo 22142 Mm.405359 NM_011653 ENSMUSG00000072235 Tuba1a Tuba-1|Tuba1 - 15 F1|15 55.29 cM tubulin, alpha 1A protein-coding 380792 Ighe Gm900 - 12|12 F1 Immunoglobulin heavy constant epsilon other 109652 Mm.7165 NM_025371 ENSMUSG00000023262 Acy1 1110014J22Rik|Acy-1 - 9 F1|9 57.49 cM aminoacylase 1 protein-coding 76965 Mm.257268 NM_199065 ENSMUSG00000075478 Slitrk1 3200001I04Rik - 14|14 E3 SLIT and NTRK-like family, member 1 protein-coding 108182 Glns-ps2 - - - glutamine synthetase pseudogene 2 pseudo 216820 Mm.21475 NM_145428 ENSMUSG00000042569 Dhrs7b BC003479|C79874|C80074|PexRAP - 11|11 B2 dehydrogenase/reductase (SDR family) member 7B protein-coding 359970 DXMgc107 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 107 unknown 102465702 NR_106078 ENSMUSG00000098253 Mir7219 Gm27613|mmu-mir-7219 - 18|18 E2 microRNA 7219 ncRNA 102634600 Mm.399106 NR_152734 ENSMUSG00000112344 Gm32141 - - 10 D2|10 predicted gene, 32141 ncRNA 110477 Tcra-V5.5 - - - T cell receptor alpha, variable 5.5 other 108652 Mm.255506 NM_134060 ENSMUSG00000021432 Slc35b3 4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2 - 13|13 A3.3 solute carrier family 35, member B3 protein-coding 282623 D15Kus4 - - - DNA segment, Chr 15, Kusakabe 4 unknown 244923 Mm.138238 NM_172925 ENSMUSG00000044938 Klhl31 9830147P19Rik|D930047P17Rik|Kbtbd1 - 9|9 D-E1 kelch-like 31 protein-coding 12450 Mm.2103 NM_009831 ENSMUSG00000020326 Ccng1 AI314029 - 11|11 A5 cyclin G1 protein-coding 100503184 Mm.386273 NR_045792 ENSMUSG00000107192 Gm19583 - - 5 C3.3|5 39.55 cM predicted gene, 19583 ncRNA 241572 Gm13812 - - 2|2 E1 pyruvate kinase, muscle pseudogene pseudo 54445 Mm.262094 NM_019449 ENSMUSG00000036908 Unc93b1 Unc-93B1|Unc93b - 19|19 A unc-93 homolog B1 (C. elegans) protein-coding 449630 Mm.454449 NR_002172 ENSMUSG00000065822 Snord15a EG449630|Gm5774|RNU15A|Rnu15-a|U15A - 7 E1|7 small nucleolar RNA, C/D box 15A snoRNA 102641031 XM_011251389 LOC102641031 - - - pyrin domain-containing protein 3 protein-coding 100042899 Gm4098 - - 11 E1|11 predicted gene 4098 unknown 100042648 Mm.487221 XR_880029 Gm3948 Gm11193 - 11 B5|11 predicted gene 3948 ncRNA 100036015 Psrs7 - - - psoriasis susceptibility 7 unknown 21011 T(1;14)5Gso T5Gso - - reciprocal translocation, Chr 1 and 14, Generoso 5 other 215332 Mm.87054 NM_172258 ENSMUSG00000049491 Slc36a3 PAT3|TRAMD2|tramdorin2 - 11|11 B1.3 solute carrier family 36 (proton/amino acid symporter), member 3 protein-coding 19636 Rb(9.16)9Rma Rb9Rma - - Robertsonian translocation, Chr 9 and 16, Universita di Roma 9 other 109833 H30 H-30 - - histocompatibility 30 protein-coding 100040880 Mm.444311 NR_033117 Gm3020 - - 14 A1|14 predicted gene 3020 pseudo 667534 Rps19-ps5 EG667534|Gm8690 - 15|15 B3.1 ribosomal protein S19, pseudogene 5 pseudo 102634085 Mm.186991 XR_001779637 Gm37168 - - 1 H6|1 predicted gene, 37168 ncRNA 218274 Gm10312 - - 13|13 B2 predicted gene 10312 pseudo 28071 Mm.196472 NM_172253 ENSMUSG00000020561 Twistnb 2410173G11|2810024J17Rik|D16Wsu83e - 12|12 A3 twist basic helix-loop-helix transcription factor 1 neighbor protein-coding 668397 Gm9148 EG668397 - 14|14 D2 ribosomal protein S11 pseudogene pseudo 71536 8430437O03Rik - - 1|1 RIKEN cDNA 8430437O03 gene protein-coding 109279877 LOC109279877 Mm92 - - VISTA enhancer mm92 biological-region 105243432 XR_870850 Gm39358 - - 9 C|9 predicted gene, 39358 ncRNA 384417 Igkv5-37 23-37|Gm1410 - 6|6 C1 immunoglobulin kappa variable 5-37 other 622491 Gm11221 - - 4|4 C2 Fcf1 pseudogene pseudo 102639760 XR_388159 Gm35995 - - 8 E1|8 predicted gene, 35995 ncRNA 404514 Olfr1421-ps1 GA_x5J8B7W6KF8-6942124-6941700 - 19|19 A olfactory receptor 1421, pseudogene 1 pseudo 13990 Mm.99113 NM_007958 ENSMUSG00000029920 Smarcad1 AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122 - 6 C1|6 30.11 cM SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 83815 Mm.9870 NM_031863 ENSMUSG00000023919 Cenpq 2610528M18Rik - 17|17 B2 centromere protein Q protein-coding 666918 Gm8362 EG666918 - 14|14 A1 predicted gene 8362 protein-coding 101056233 LOC101056233 - - X A6 nuclear receptor corepressor 1 pseudogene pseudo 100038368 Mm.38198 Gm10609 - - - predicted gene 10609 protein-coding 70299 2610012C04Rik - - 1|1 RIKEN cDNA 2610012C04 gene protein-coding 328451 Mm.320571 NR_002862 Gm5088 EG328451|Pabpc4l - 14 E2.1|14 poly(A)-binding protein, cytoplasmic pseudogene pseudo 14373 Mm.439721 NM_008059 ENSMUSG00000009633 G0s2 AI255151|AV006465 - 1 H6|1 97.69 cM G0/G1 switch gene 2 protein-coding 546476 Gm5950 EG546476 - 10 B2|10 triosephosphate isomerase 1 pseudogene pseudo 100035211 Imraq1 - - - immune response to AAV2 QTL 1 unknown 20917 Mm.371585 NM_011507 ENSMUSG00000061838 Suclg2 AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG - 6 D2|6 44.63 cM succinate-Coenzyme A ligase, GDP-forming, beta subunit protein-coding 105245332 XR_872190 Gm40806 - - 10 D3|10 predicted gene, 40806 ncRNA 102638941 XR_376587 Gm12853 - - 4 D2.1|4 54.98 cM predicted gene 12853 ncRNA 100126877 Mm.452826 Gm10204 - - - predicted gene 10204 unknown 62259 D18Mit57 - - 18 25.47 cM DNA segment, Chr 18, Massachusetts Institute of Technology 57 unknown 330474 Mm.333594 NM_198631 ENSMUSG00000059273 Zc3h4 Bwq1|Gm768|Kiaa1064-hp|mKIAA1064 - 7 A2|7 9.03 cM zinc finger CCCH-type containing 4 protein-coding 97814 C80502 - - - expressed sequence C80502 unknown 194225 Mm.252206 NM_177571 ENSMUSG00000029451 Gm13103 E330017N17 - 4 E1|4 predicted gene 13103 protein-coding 102632592 Gm29000 - - Y|Y predicted gene 29000 ncRNA 404398 Olfr515-ps1 GA_x5J8B7W5M25-282037-281897 - 7|7 E3 olfactory receptor 515, pseudogene 1 pseudo 80752 Mm.320355 NM_030565 ENSMUSG00000025854 Fam20c C76981|DMP-4|DMP4|GEF-CK|mKIAA4081 - 5|5 G2 family with sequence similarity 20, member C protein-coding 15372 Mm.303357 NM_145998 ENSMUSG00000050100 Hmx2 Nkx-5.2|Nkx5-2 - 7 F3|7 74.34 cM H6 homeobox 2 protein-coding 108168337 Gm46593 - - 17 A1|17 protein FAM32A pseudogene pseudo 100417379 Gm18578 - - 14|14 A3 ubiquitin specific peptidase 7 pseudogene pseudo 27723 D1Sta8 - - - DNA segment, Chr 1, Philip Stanier 8 unknown 100041211 Gm10297 - - 7|7 B5 G kinase anchoring protein 1 pseudogene pseudo 16873 Mm.5151 NM_008499 ENSMUSG00000029595 Lhx5 Lim2 - 5 F|5 60.62 cM LIM homeobox protein 5 protein-coding 72249 Mm.443268 NR_040255 ENSMUSG00000085416 1700019G24Rik - - 6|6 A1 RIKEN cDNA 1700019G24 gene ncRNA 105247161 XR_881395 Gm12415 - - 4 C4|4 39.99 cM predicted gene 12415 ncRNA 102635732 LOC102635732 - - 8 A3 SUMO-conjugating enzyme UBC9 pseudogene pseudo 106626 Mm.474333 AI645535 - - - expressed sequence AI645535 protein-coding 100038815 Slt5 - - - susceptibility to spontaneously occurring lung cancer 5 unknown 105246717 XR_878582 Gm41960 - - 1 E4|1 predicted gene, 41960 ncRNA 109280159 LOC109280159 - - - Tbx2 5' regulatory region biological-region 102638888 Mm.325729 XM_006511593 LOC102638888 - - 9 B uncharacterized LOC102638888 protein-coding 630894 Gm7046 - - 13|13 A1 pyruvate kinase, muscle pseudogene pseudo 244891 Mm.86588 NM_175536 ENSMUSG00000034007 Scaper C430017I08|D530014O03Rik|Zfp291 - 9|9 B S phase cyclin A-associated protein in the ER protein-coding 109279981 LOC109279981 Mm680 - - VISTA enhancer mm680 biological-region 666754 Gm8275 EG666754 - 12|12 C3 predicted gene 8275 pseudo 102639548 Mm.399108 Gm13598 - - 2|2 39.31 cM predicted gene 13598 ncRNA 100035094 Bdywt - - 8 19.01 cM body weight unknown 105243476 XR_870974 Gm39389 - - 9 E3.1|9 predicted gene, 39389 ncRNA 100604 Mm.319847 NM_133897 ENSMUSG00000054720 Lrrc8c AD158|AI326115|E430036I04Rik|fad158 - 5|5 E5 leucine rich repeat containing 8 family, member C protein-coding 100041311 Mm.388018 NR_028586 ENSMUSG00000086373 Gm11978 - - 11|11 A1 predicted gene 11978 pseudo 328232 Mm.441399 NM_001033399 ENSMUSG00000051335 Gfod1 9630032O13|AI850995 - 13|13 A4 glucose-fructose oxidoreductase domain containing 1 protein-coding 75873 4930568B11Rik - - 5|5 G2 RIKEN cDNA 4930568B11 gene protein-coding 105243423 XR_870815 Gm39349 - - 9 B|9 predicted gene, 39349 ncRNA 22586 Xmv8 Xmv-8 - - xenotropic murine leukemia virus 8 other 105244753 XR_868431 Gm40308 - - 5 C3.1|5 predicted gene, 40308 ncRNA 100035540 Ssta4 - - 11 40.59 cM susceptibility to Salmonella typhimurium antigens 4 unknown 50754 Mm.196475 NM_080428 ENSMUSG00000028086 Fbxw7 1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10 - 3 F1|3 37.7 cM F-box and WD-40 domain protein 7 protein-coding 102637111 Gm20541 - - 17|17 19.16 cM predicted gene 20541 protein-coding 100039796 Mm.482363 NM_001145164 ENSMUSG00000078921 Tgtp2 TGTP - 11 B1.2|11 T cell specific GTPase 2 protein-coding 100035306 Scgq4 Scg-4 - 7 17.26 cM spontaneous crescentic glomerulonephritis QTL 4 unknown 100504281 Gm14238 - - 2|2 77.26 cM cytochrome c, somatic-like pseudo 74493 Mm.249310 NM_001163635 ENSMUSG00000024811 Tnks2 5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2 - 19|19 C2 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 protein-coding 61557 D9Mit175 - - 9 34.36 cM DNA segment, Chr 9, Massachusetts Institute of Technology 175 unknown 100862454 LOC100862454 - - - protein Mis18-beta-like pseudo 110120478 LOC110120478 - - - VISTA enhancer mm1557 biological-region 105245643 XR_873975 Gm41071 - - 13 D2.2|13 predicted gene, 41071 ncRNA 100036407 Ftm3 - - - total body fat tissue mass 3 unknown 62563 D12Mit120 - - 12 48.78 cM DNA segment, Chr 12, Massachusetts Institute of Technology 120 unknown 319849 Mm.440860 NR_040277 ENSMUSG00000086763 Plxna4os1 B230378P21Rik - 6|6 A3.3 plexin A4, opposite strand 1 ncRNA 75558 Mm.383398 NM_029336 ENSMUSG00000057072 Spata45 1700022P22Rik - 1|1 H6 spermatogenesis associated 45 protein-coding 16948 Mm.172 NM_010728 ENSMUSG00000024529 Lox AI893619|TSC-160|rrg - 18 D1|18 28.22 cM lysyl oxidase protein-coding 12400 Mm.2018 NM_022309 ENSMUSG00000031885 Cbfb AI893578|PEA2|PEBP2b|Pebp2|Pebpb2 - 8 D3|8 53.04 cM core binding factor beta protein-coding 258356 Mm.457775 NM_146359 ENSMUSG00000048469 Olfr564 MOR14-10 - 7|7 E3 olfactory receptor 564 protein-coding 100041594 XM_001476854 Spin2-ps3 Gm14759 - X A7.3|X spindlin family, member 2, pseudogene 3 protein-coding 105242400 Gm38682 - - X|X predicted gene, 38682 ncRNA 100042342 Mm.429750 NM_001098269 ENSMUSG00000095528 Gm10375 - - 14|14 C1 predicted gene 10375 protein-coding 105245101 Gm40598 - - 12 D3|12 predicted gene, 40598 pseudo 102637250 Mm.446328 XR_872225 Gm11946 - - 11 A1|11 2.48 cM predicted gene 11946 ncRNA 668572 Mm.490537 XR_001778101 ENSMUSG00000091474 2610021A01Rik - - 7|7 B3 RIKEN cDNA 2610021A01 gene unknown 100043641 Gm12502 - - 3|3 F2.3 predicted gene 12502 pseudo 75813 Mm.159583 NR_131015 ENSMUSG00000112832 4930484H19Rik - - 10|10 D3 RIKEN cDNA 4930484H19 gene ncRNA 74923 Mm.401960 4930471D02Rik - - 10|10 C2 RIKEN cDNA 4930471D02 gene ncRNA 100042574 Trav3n-2 Gm3909 - 14 C2|14 T cell receptor alpha variable 3N-2 other 100628620 NR_039582 ENSMUSG00000092745 Mir5122 mmu-mir-5122|mu-mir-5122 - 4 D2.3|4 66.25 cM microRNA 5122 ncRNA 723823 NR_029800 ENSMUSG00000065555 Mir219a-1 Mir219-1|Mirn219-1|mir-219a-1|mmu-mir-219a-1 - 17|17 B1 microRNA 219a-1 ncRNA 21678 Mm.6655 NM_011566 ENSMUSG00000002249 Tead3 DTEF-1|ETFR-1|TEAD-3|TEF-5|Tcf13r2 - 17 A3.3|17 14.66 cM TEA domain family member 3 protein-coding 105244929 XR_869877 Gm40451 - - 7 F1|7 predicted gene, 40451 ncRNA 258455 Mm.377509 NM_146463 ENSMUSG00000061798 Olfr1204 MOR232-6 - 2|2 E1 olfactory receptor 1204 protein-coding 15965 Mm.14091 NM_010503 ENSMUSG00000078354 Ifna2 Ifa2 - 4 C4|4 42.02 cM interferon alpha 2 protein-coding 207781 Mm.1465 NM_174847 ENSMUSG00000045975 C2cd2 5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045 - 16|16 C4 C2 calcium-dependent domain containing 2 protein-coding 100038709 Mm.484070 NR_033476 Gm10789 - - 16 C3.3|16 predicted gene 10789 ncRNA 210940 Mm.297614 NM_001033764 ENSMUSG00000073722 4931408C20Rik - - 1|1 A5 RIKEN cDNA 4931408C20 gene protein-coding 18973 Mm.35061 NM_011132 ENSMUSG00000007080 Pole - - 5 F|5 53.45 cM polymerase (DNA directed), epsilon protein-coding 105245229 XR_871866 Gm40713 - - 10 C1|10 predicted gene, 40713 ncRNA 74186 Mm.274715 NM_028804 ENSMUSG00000026676 Ccdc3 2310045O21Rik - 2|2 A1 coiled-coil domain containing 3 protein-coding 19616 Rb(8.14)16Rma Rb16Rma - - Robertsonian translocation, Chr 8 and 14, Universita di Roma 16 other 108169101 XM_017321261 Gm46935 - - 5 E3|5 predicted gene, 46935 protein-coding 626724 Vmn1r-ps19 EG626724|Gm6701 - 6|6 B3 vomeronasal 1 receptor, pseudogene 19 pseudo 116913 Mm.443229 NM_026429 ENSMUSG00000062705 Tpbpb 1600012N09Rik - 13|13 B2 trophoblast specific protein beta protein-coding 170791 Mm.392436 NM_133242 ENSMUSG00000027620 Rbm39 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper - 2|2 H1 RNA binding motif protein 39 protein-coding 14825 Mm.21013 NM_008176 ENSMUSG00000029380 Cxcl1 Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro - 5 E1|5 44.78 cM chemokine (C-X-C motif) ligand 1 protein-coding 100049540 Gm4734 - - 9 F2|9 predicted gene 4734 pseudo 102637939 XR_385582 Gm34627 - - 17 B3|17 predicted gene, 34627 ncRNA 100504352 Mm.440688 C78197 - - 11|11 expressed sequence C78197 unknown 62927 D10Mit264 - - - DNA Segment, Chr 10, Massachusetts Institute of Technology 264 unknown 105244367 XR_867010 Gm39990 - - 2 H3|2 predicted gene, 39990 ncRNA 105246553 Gm41827 - - 19|19 predicted gene, 41827 ncRNA 100418190 Gm19064 - - 6|6 A1 membrane bound O-acyltransferase domain containing 2 pseudogene pseudo 12823 Mm.329196 NM_007733 ENSMUSG00000026141 Col19a1 - - 1|1 A5 collagen, type XIX, alpha 1 protein-coding 102637660 XR_377814 Gm34414 - - 6 D1|6 predicted gene, 34414 ncRNA 100034872 Nhdlq6 - - 7 15.86 cM non-HDL QTL 6 unknown 76878 6330582A15Rik - - - RIKEN cDNA 6330582A15 gene protein-coding 100043309 Mm.340872 NR_152202 ENSMUSG00000086943 4732414G09Rik - - 11|11 B4 RIKEN cDNA 4732414G09 gene ncRNA 383678 Mm.464561 NM_001099301 ENSMUSG00000079539 Obp2b Lcn14 - 2|2 A3 odorant binding protein 2B protein-coding 20598 Mm.953 NM_009213 ENSMUSG00000019822 Smpd2 AW108287|nSMase|nSMase1 - 10|10 B2 sphingomyelin phosphodiesterase 2, neutral protein-coding 257771 Olfr795-ps1 EG257771|GA_x5J8B7W6HFP-3198834-3199739|Gm5000|MOR112-3_p - 10 D3|10 olfactory receptor 795, pseudogene 1 pseudo 111769 Iapls1-1 - - - intracisternal A particle, lymphocyte specific 1-1 other 223776 Mm.44763 NM_027905 ENSMUSG00000035757 Selenoo 1300018J18Rik|Selo - 15|15 E3 selenoprotein O protein-coding 70626 Mm.379180 NM_027486 5730522E02Rik - - 11|11 A3.2-A3.3 RIKEN cDNA 5730522E02 gene ncRNA 94254 Mm.29508 NM_033572 ENSMUSG00000061979 Rcc1l 5730496C04Rik|AU019812|Wbscr16 - 5|5 G2 reculator of chromosome condensation 1 like protein-coding 630195 Vhq52.a21.63 - - 12|12 immunoglobulin heavy chain V region VHQ52.a21.63 other 100035231 Knyw5 - - - kidney weight 5 unknown 77836 Mm.138437 NM_029993 ENSMUSG00000024806 Mlana A930034P04Rik|Mart1 - 19 C1|19 24.28 cM melan-A protein-coding 674283 Gm20561 - - 9|9 60S ribosomal protein L37-like pseudo 102467266 n-TDgtc16 n-Td16 - 10 C2|10 nuclear encoded tRNA aspartic acid 16 (anticodon GTC) tRNA 105246084 XR_875948 Gm41431 - - 16 A3|16 predicted gene, 41431 ncRNA 102633798 Gm31538 - - 19|19 predicted gene, 31538 ncRNA 382045 Mm.334726 NM_001033468 ENSMUSG00000061577 Adgrg5 Gm1109|Gpr114|PGR27 - 8|8 C5 adhesion G protein-coupled receptor G5 protein-coding 399629 9530029O12Rik - - - RIKEN cDNA 9530029O12 gene protein-coding 258602 Mm.296766 NM_146609 ENSMUSG00000094353 Olfr150 M93|MOR171-18 - 9|9 A5.1 olfactory receptor 150 protein-coding 50706 Mm.236067 NM_015784 ENSMUSG00000027750 Postn A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN - 3|3 C periostin, osteoblast specific factor protein-coding 102465605 NR_105967 ENSMUSG00000099238 Mir7001 Gm27886|mmu-mir-7001 - 2|2 E1 microRNA 7001 ncRNA 545536 Gm10704 - - 3|3 F1 predicted pseudogene 10704 pseudo 105244979 Gm40497 - - 8|8 predicted gene, 40497 ncRNA 100417644 Gm18733 - - 17|17 B1 vacuolar protein sorting 52 pseudogene pseudo 14187 Mm.5378 NM_008012 ENSMUSG00000029762 Akr1b8 FR-1|Fgfrp|Fgrp - 6 B1|6 14.91 cM aldo-keto reductase family 1, member B8 protein-coding 74778 Mm.30056 NM_029101 ENSMUSG00000018040 Rrp7a 1110014J01Rik|AA408146|Kheg1 - 15|15 E1 ribosomal RNA processing 7 homolog A (S. cerevisiae) protein-coding 102632950 XR_387648 Gm30895 - - 5 F|5 predicted gene, 30895 ncRNA 319386 Mm.442069 D130062J10Rik - - 13|13 RIKEN cDNA D130062J10 gene protein-coding 224224 Mm.151998 NM_174876 ENSMUSG00000035270 Impg2 IPM200|PG10.2|Rsbp|Spacrcan - 16|16 C1.1 interphotoreceptor matrix proteoglycan 2 protein-coding 102465621 NR_105994 ENSMUSG00000098731 Mir7027 Gm27831|mmu-mir-7027 - 5|5 F microRNA 7027 ncRNA 100042745 Gm15790 - - 1 E4|1 predicted pseudogene 15790 protein-coding 102466777 NR_105937 ENSMUSG00000098458 Mir6971 Gm27307|mmu-mir-6971 - 17|17 B1 microRNA 6971 ncRNA 15429 Mm.4932 NM_010467 ENSMUSG00000042448 Hoxd1 Hox-4.9 - 2 C3|2 44.13 cM homeobox D1 protein-coding 105242889 Gm38974 - - 7|7 predicted gene, 38974 ncRNA 11966 Mm.249096 NM_007509 ENSMUSG00000006273 Atp6v1b2 AI194269|AI790362|Atp6b2|HO57|R74844 - 8|8 B3.3 ATPase, H+ transporting, lysosomal V1 subunit B2 protein-coding 100417713 Gm15719 - - 5|5 A3 BCL2-associated transcription factor 1 pseudogene pseudo 359992 DXMgc130 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 130 unknown 109590 Es3 Ee-2|Es-3 - - esterase 3 protein-coding 74468 Mm.251601 NM_028957 ENSMUSG00000029678 Hyal5 4933439A12Rik - 6|6 A3.1 hyaluronoglucosaminidase 5 protein-coding 16923 Mm.65493 NM_008507 ENSMUSG00000042594 Sh2b3 AI429800|Lnk - 5 F|5 61.99 cM SH2B adaptor protein 3 protein-coding 100503881 Gm10343 - - 16|16 5.89 cM predicted gene 10343 pseudo 102348 Mm.445804 AW743432 AW822077 - - expressed sequence AW743432 protein-coding 21925 Mm.1716 NM_009394 ENSMUSG00000017300 Tnnc2 Tncs - 2|2 H3 troponin C2, fast protein-coding 54159 Mm.377125 NM_019398 ENSMUSG00000059606 Rnase2b Ear5|Raf4|mR5 - 14|14 C1 ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin) protein-coding 108154 Mm.208125 NM_175496 ENSMUSG00000046169 Adamts6 A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo - 13|13 D1 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6 protein-coding 100861489 NR_046141 ENSMUSG00000096343 n-R5s133 Rn5s18 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 133 rRNA 100415779 Gm17829 - - 10 B4|10 32.23 cM oligosaccharyltransferase complex subunit pseudogene pseudo 140780 Mm.281490 NM_080708 ENSMUSG00000034663 Bmp2k 4933417M22Rik|AA673486|AV128808|BIKE - 5|5 E3 BMP2 inducible kinase protein-coding 100417605 Gm18710 - - 17|17 A3.2 3-hydroxyisobutyrate dehydrogenase pseudogene pseudo 105245546 Gm40990 - - 13|13 predicted gene, 40990 ncRNA 68190 Mm.139089 NR_028300 Dubr 5330426P16Rik|Dum - 16|16 B5 Dppa2 upstream binding RNA ncRNA 56149 Mm.276573 NM_019518 ENSMUSG00000000531 Grasp tamalin - 15|15 F1 GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein protein-coding 102467308 n-TGccc6 n-Tg6 - 3 F2.1|3 nuclear encoded tRNA glycine 6 (anticodon CCC) tRNA 271970 Mm.317021 NM_173451 ENSMUSG00000046561 Arsj 9330196J05Rik|D830047F08 - 3|3 G1 arylsulfatase J protein-coding 105244476 Gm36981 - - 3|3 predicted gene, 36981 ncRNA 67351 Mm.320172 NR_038127 ENSMUSG00000087104 Tmem132cos 1700085B03Rik - 5|5 G1.2 transmembrane protein 132C, opposite strand ncRNA 75747 Mm.325126 NM_030261 ENSMUSG00000032009 Sesn3 5630400E15Rik|BC003348|SEST3 - 9|9 A1 sestrin 3 protein-coding 100036111 Lmr19 - - 10 45.35 cM leishmaniasis resistance 19 unknown 12773 Mm.1337 NM_009916 ENSMUSG00000047898 Ccr4 C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r - 9 F3|9 64.49 cM chemokine (C-C motif) receptor 4 protein-coding 12131 Bkm1 Bkm-1 - - banded krait minor satellite DNA 1 other 620661 Itpa-ps1 pItpaA - 2|2 E1 inosine triphosphatase (nucleoside triphosphate pyrophosphatase) pseudogene 1 pseudo 61194 D1Mit115 - - 1 82.78 cM DNA segment, Chr 1, Massachusetts Institute of Technology 115 unknown 245404 Mm.55685 NM_178739 ENSMUSG00000045284 Dcaf12l1 9330180J20|A230038L21Rik|Decaf12l1|Wdr40b - X|X A4 DDB1 and CUL4 associated factor 12-like 1 protein-coding 27897 D16Ium68 - - 16 26.87 cM DNA segment, Chr 16, Indiana University Medical 68 unknown 100312525 Vmn1r-ps95 Gm11288 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 95 pseudo 100034813 Lbm8 - - - lean body mass 8 unknown 100502868 Mm.297722 NR_037973 ENSMUSG00000112739 Gm20597 B230314j19 - 10|10 B3 predicted gene, 20597 ncRNA 105244745 XR_868413 Gm40301 - - 5 B3|5 predicted gene, 40301 ncRNA 76531 Mm.432123 2600001M11Rik AA407081|AA407858 - 2|2 RIKEN cDNA 2600001M11 gene protein-coding 27374 Mm.196585 NM_013768 ENSMUSG00000023110 Prmt5 Jbp1|Skb1 - 14|14 C2 protein arginine N-methyltransferase 5 protein-coding 231225 Mm.30688 NM_173764 ENSMUSG00000046985 Tapt1 4932414K18Rik - 5|5 B3 transmembrane anterior posterior transformation 1 protein-coding 61489 D7Mit177 - - 7 88.5 cM DNA segment, Chr 7, Massachusetts Institute of Technology 177 unknown 668192 Gm9034 EG668192 - 10|10 B2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 11490 Mm.274049 NM_009614 ENSMUSG00000028041 Adam15 AD56|MDC15 - 3 F1|3 39.07 cM a disintegrin and metallopeptidase domain 15 (metargidin) protein-coding 100418102 Gm19002 - - 1|1 A1 predicted gene, 19002 pseudo 62637 D14Mit132 - - 14 6.03 cM DNA segment, Chr 14, Massachusetts Institute of Technology 132 unknown 320327 Mm.32023 A430106G13Rik - - 1|1 RIKEN cDNA A430106G13 gene protein-coding 246178 Msu - - - male sterility and urinary obstruction unknown 100043676 Mm.446377 Gm4583 - - 14 D1|14 predicted gene 4583 protein-coding 235628 Mm.292285 NM_153099 ENSMUSG00000044664 Prss42 Tessp2 - 9|9 F2 protease, serine 42 protein-coding 108167490 Gm44254 - - 7 A1|7 predicted gene, 44254 pseudo 71657 Mm.84495 Srrm3os 4930521C21Rik - 5|5 serine/arginine repetitive matrix 3, opposite strand protein-coding 116982 Pbwm - - 1 81.02 cM pentobarbital withdrawal modifier unknown 62842 D12Mit222 - - 12 17.99 cM DNA segment, Chr 12, Massachusetts Institute of Technology 222 unknown 27486 12T - - - DNA segment, 12T unknown 216974 Mm.50974 NM_001045516 ENSMUSG00000044122 Proca1 4933404M19Rik - 11|11 B5 protein interacting with cyclin A1 protein-coding 108459 Ms56 MMS56 - - minisatellites detected by probe MMS56 other 14013 Mm.56965 NM_007963 ENSMUSG00000027684 Mecom D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1 - 3 A3|3 12.66 cM MDS1 and EVI1 complex locus protein-coding 74472 Mm.176944 NM_028961 ENSMUSG00000036770 Stpg3 4933433C11Rik - 2|2 A3 sperm tail PG rich repeat containing 3 protein-coding 107949 H2-T5l - - - histocompatibility 2, T region locus 5 like protein-coding 102635981 Mm.417079 XR_379497 ENSMUSG00000111852 Gm33180 - - 9 B|9 predicted gene, 33180 ncRNA 446099 Mm.442342 NM_001004194 ENSMUSG00000045693 Nlrp4e 4930406H16Rik|Nalp-epsilon|Nalp4e|Nlrp4 - 7|7 A3 NLR family, pyrin domain containing 4E protein-coding 102467283 n-TCgca41 n-Tc41 - 6 B2.3|6 nuclear encoded tRNA cysteine 41 (anticodon GCA) tRNA 387197 NR_029588 ENSMUSG00000065404 Mir201 Mirn201|mir-201|mmu-mir-201 - X|X A7.1 microRNA 201 ncRNA 100417829 Mm.490377 NR_040453 ENSMUSG00000099241 Gm17757 - - 7|7 E3 GTPase, very large interferon inducible 1 pseudogene pseudo 18774 pl - - - paraparesis-lethal unknown 69379 Mm.24596 NM_027062 ENSMUSG00000015083 C8g - - 2 A3|2 17.31 cM complement component 8, gamma polypeptide protein-coding 277973 Mm.334766 NM_001081332 ENSMUSG00000014786 Slc9a5 Gm696 - 8|8 D3 solute carrier family 9 (sodium/hydrogen exchanger), member 5 protein-coding 102634275 XR_373522 Gm29539 - - 1 C4|1 predicted gene 29539 ncRNA 226352 Mm.253156 NM_145506 ENSMUSG00000026383 Epb41l5 1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5 - 1|1 E2.3 erythrocyte membrane protein band 4.1 like 5 protein-coding 13409 Mm.219585 NM_028953 ENSMUSG00000024749 Tmc1 4933416G09Rik|Beethoven|Bth|CWEA1|dn - 19 B|19 13.98 cM transmembrane channel-like gene family 1 protein-coding 68233 Mm.424983 NM_001085491 ENSMUSG00000078554 Fam229a 1700125D06Rik - 4|4 D2.2 family with sequence similarity 229, member A protein-coding 70295 2610011I18Rik - - 10|10 RIKEN cDNA 2610011I18 gene protein-coding 21385 Mm.287052 NM_009324 ENSMUSG00000000093 Tbx2 - - 11 C|11 51.34 cM T-box 2 protein-coding 14293 Mm.56951 NM_013521 ENSMUSG00000045551 Fpr1 FPR|LXA4R|fMLF-R - 17 A3.2|17 10.63 cM formyl peptide receptor 1 protein-coding 631264 Gm7058 EG631264 - X E3|X aldolase A, fructose-bisphosphate pseudogene pseudo 109212 Mm.33118 NM_144526 ENSMUSG00000020808 Pimreg 2610008F03Rik|6720460F02Rik|AI115087|CATS|Fam64a - 11|11 B4 PICALM interacting mitotic regulator protein-coding 103405 Mm.443882 4932439E07Rik AW011916 - - RIKEN cDNA 4932439E07 gene protein-coding 19327 Rab11b-ps1 Rab11b-rs1 - 1 H6|1 RAB11B, member RAS oncogene family, pseudogene 1 pseudo 17142 Mm.377098 NM_020019 ENSMUSG00000063728 Magea6 Mage-a6 - X F3|X 72.38 cM melanoma antigen, family A, 6 protein-coding 112038 Lwq4 - - - liver weight QTL 4 unknown 111286 Hmgn1-rs5 Hmg14-rs5 - - high mobility group nucleosomal binding domain 1, related sequence 5 pseudo 380973 Mm.61024 NM_001195694 Fam186a Gm920 - 15|15 F1 family with sequence similarity 186, member A protein-coding 73845 Mm.73248 NM_028665 ENSMUSG00000041343 Ankrd42 4931426M20|4933417L02Rik|Ikbn - 7|7 E1 ankyrin repeat domain 42 protein-coding 102641120 XR_878405 Gm29483 - - 1 D|1 predicted gene 29483 ncRNA 100034895 Alcw7 - - - alcohol withdrawal 7 unknown 30058 Mm.214504 NM_013898 ENSMUSG00000048007 Timm8a1 DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a - X E3|X 56.18 cM translocase of inner mitochondrial membrane 8A1 protein-coding 109280138 LOC109280138 Mm1322 - - VISTA enhancer mm1322 biological-region 105244680 XR_868104 Gm40242 - - 4 D2.2|4 predicted gene, 40242 ncRNA 58170 Mm.88839 NM_021370 ENSMUSG00000028008 Asic5 Accn5|Blinac|Inac - 3|3 E3 acid-sensing (proton-gated) ion channel family member 5 protein-coding 70226 Mm.391639 NR_033561 ENSMUSG00000055188 Rbm3os 2900002K06Rik - X|X A1.1 RNA binding motif protein 3, opposite strand ncRNA 53761 Mm.272462 NM_020027 ENSMUSG00000024393 Prrc2a 3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178 - 17 B1|17 18.59 cM proline-rich coiled-coil 2A protein-coding 100034830 Mndl2 - - - mandible length 2 unknown 242608 Mm.74710 NM_172874 ENSMUSG00000028600 Podn 9430070G18|Pcan|SLRR5A - 4|4 C7 podocan protein-coding 19661 Mm.436622 NM_015745 ENSMUSG00000041534 Rbp3 Irbp|Rbp-3 - 14 B|14 20.8 cM retinol binding protein 3, interstitial protein-coding 724062 NR_029778 ENSMUSG00000065556 Mir101b Mirn101b|mir-101b - 19 C1|19 microRNA 101b ncRNA 102637531 XR_388824 Gm34317 - - 11 B4|11 predicted gene, 34317 ncRNA 78801 Mm.36006 NM_030187 ENSMUSG00000041323 Ak7 4930502N02Rik|AK 7 - 12|12 E adenylate kinase 7 protein-coding 16721 l17Wis3 l(17)-3Wis - - lethal, Chr 17, U Wisconsin 3 unknown 68048 Mm.34109 NM_026531 ENSMUSG00000030609 Aen 2700083B06Rik|Isg20l1 - 7|7 D2 apoptosis enhancing nuclease protein-coding 52163 Mm.277373 NM_133926 ENSMUSG00000030272 Camk1 AI505105|CaMKIalpha|D6Ertd263e - 6 E3|6 52.75 cM calcium/calmodulin-dependent protein kinase I protein-coding 97298 C79627 - - - expressed sequence C79627 protein-coding 57357 Mm.289446 NM_020611 ENSMUSG00000029233 Srd5a3 1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l - 5|5 C3.3 steroid 5 alpha-reductase 3 protein-coding 242384 Mm.132507 NM_175516 ENSMUSG00000045083 Lingo2 B230217C06Rik|Lern3|Lrrn6c - 4|4 A5 leucine rich repeat and Ig domain containing 2 protein-coding 100418436 Gm12653 - - 4|4 C5 non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase) pseudogene pseudo 100417524 Gm14894 - - X|X E1 ring finger and WD repeat domain 2 pseudogene pseudo 102633232 LOC102633232 - - 8 A1.3 F-box/SPRY domain-containing protein 1-like pseudo 111251 H2-M10-ps1 13H - - histocompatibility 2, M region locus, pseudogene 1 pseudo 100038438 Mm.442482 Gm10372 - - - predicted gene 10372 unknown 72395 Mm.112888 NR_015560 ENSMUSG00000085562 2610028E06Rik BB043107 - 4|4 D2.2 RIKEN cDNA 2610028E06 gene ncRNA 108168877 XR_001783870 Gm46810 - - 3 F1|3 predicted gene, 46810 ncRNA 235574 Mm.326247 NM_175025 ENSMUSG00000032570 Atp2c1 1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1 - 9|9 F1 ATPase, Ca++-sequestering protein-coding 100416454 Gm18118 - - 5|5 E2 predicted gene, 18118 pseudo 26361 Mm.89986 NM_011924 ENSMUSG00000026432 Avpr1b AVPR3|V3/V1b|VIBR|VPR3 - 1|1 E4 arginine vasopressin receptor 1B protein-coding 73805 Mm.440862 4930406D14Rik AU022823 - - RIKEN cDNA 4930406D14 gene protein-coding 21042 T(10;14)8Rk T8Rk - - reciprocal translocation, Chr 10 and 14, Roderick 8 other 108460 Ms53 MMS53 - - minisatellites detected by probe MMS53 other 100043031 Gm4181 - - 14 C2|14 predicted gene 4181 protein-coding 16541 Mm.383181 NM_008437 ENSMUSG00000002204 Napsa KAP|Kdap|NAP1|SNAPA|pronapsin - 7|7 B3 napsin A aspartic peptidase protein-coding 18726 Mm.440989 NM_011090 ENSMUSG00000030427 Lilra6 7M1|Pira3 - 7|7 A1 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 protein-coding 69928 Mm.260893 NM_027263 ENSMUSG00000073705 Cenps 2610040C18Rik|2810407L01Rik|Apitd1|CENP-S - 4|4 E2 centromere protein S protein-coding 242627 Mm.484115 NM_001167876 ENSMUSG00000078598 Skint5 Skint-5 - 4|4 D1 selection and upkeep of intraepithelial T cells 5 protein-coding 105242876 XR_881886 Gm38964 - - 7 A3|7 predicted gene, 38964 ncRNA 243864 Mm.233503 NM_153760 ENSMUSG00000040987 Mill2 Micb - 7 A3|7 9.35 cM MHC I like leukocyte 2 protein-coding 102467384 n-TTagt2 n-Tt2 - 14 C3|14 nuclear encoded tRNA threonine 2 (anticodon AGT) tRNA 112166 Faq5 - - 12 9.85 cM fluctuating asymmetry QTL 5 unknown 104126 Lith3 - - - lithogenic gene 3 unknown 62156 D14Mit38 - - 14 50.9 cM DNA segment, Chr 14, Massachusetts Institute of Technology 38 unknown 19283 Mm.41639 NM_011219 ENSMUSG00000068748 Ptprz1 AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta - 6|6 A3.1 protein tyrosine phosphatase, receptor type Z, polypeptide 1 protein-coding 102637304 XR_383932 Gm34150 - - 15 B3.1|15 predicted gene, 34150 ncRNA 52493 D14Ertd170e - - 14 11.4 cM DNA segment, Chr 14, ERATO Doi 170, expressed unknown 102636555 Gm29611 - - 1|1 predicted gene 29611 ncRNA 16419 Mm.6424 NM_010580 ENSMUSG00000022817 Itgb5 AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5 - 16|16 B3 integrin beta 5 protein-coding 751539 NR_030445 ENSMUSG00000076145 Mir679 Mirn679|mir-679|mmu-mir-679 - 12 F1|12 microRNA 679 ncRNA 102638356 XR_389667 Gm34941 - - 3 A3|3 predicted gene, 34941 ncRNA 102467450 n-TAagc9 n-Ta9 - 19 A|19 nuclear encoded tRNA alanine 9 (anticodon AGC) tRNA 72685 Mm.76494 NM_198412 ENSMUSG00000028528 Dnajc6 2810027M23Rik|mKIAA0473 - 4|4 C6 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 359862 DXMgc43 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 43 unknown 16275 In(3)11Rk-p In(3)11Rk|In11Rk - - inversion, Chr 3, Roderick 11, proximal other 102639171 XR_378172 Gm35544 - - 6 G3|6 predicted gene, 35544 ncRNA 102637481 XR_873417 Gm34278 - - 13 B1|13 predicted gene, 34278 ncRNA 74663 Mm.50263 NM_029042 ENSMUSG00000022798 4930435E12Rik TSCPA - 16|16 B4 RIKEN cDNA 4930435E12 gene protein-coding 100503359 Mm.475179 Ppp1r18os 5530401N12Rik - 17|17 protein phosphatase 1, regulatory subunit 18, opposite strand unknown 100035610 Manln4 - - 4 28.62 cM mandible length 4 unknown 102634638 Gm32175 - - 3|3 predicted gene, 32175 pseudo 112073 Bpq4 - - 5 77.1 cM blood pressure QTL 4 unknown 258286 Mm.377415 NM_146289 ENSMUSG00000092292 Olfr113 MOR218-9 - 17|17 B1 olfactory receptor 113 protein-coding 18572 Mm.41166 NM_011053 ENSMUSG00000025047 Pdcd11 1110021I22Rik|ALG-4|Pdcd7|mKIAA0185 - 19|19 C3 programmed cell death 11 protein-coding 622339 NM_001081297 Gm6316 EG622339 - 12|12 C2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 435292 Gm5652 EG435292 - 12|12 A1.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 110210 Tctex11 Tctex-11 - - t-complex testis expressed 11 protein-coding 106162 AI197313 - - - expressed sequence AI197313 unknown 100039837 Mm.335533 XR_871349 Gm2449 - - 9 F3|9 predicted gene 2449 unknown 215008 Mm.124177 NM_172538 ENSMUSG00000036099 Vezt A630071D13Rik|AI848282 - 10|10 C2 vezatin, adherens junctions transmembrane protein protein-coding 26438 Mm.89991 NM_011963 ENSMUSG00000003505 Psg18 Cea-3|Cea3|mmCGM6 - 7 A3|7 9.15 cM pregnancy specific glycoprotein 18 protein-coding 100035382 Mohg4 - - - modifier of hg 4 unknown 211039 Mm.213210 NR_130964 ENSMUSG00000070794 BC016548 - - 2|2 E2 cDNA sequence BC016548 ncRNA 382473 Gm11949 Map1lc3-5 - 11|11 A1 microtubule-associated protein 1 light chain 3 copy 5 pseudogene pseudo 56772 Mm.331208 NM_019914 ENSMUSG00000053192 Mllt11 AI839562|Af1q|Zfp692 - 3|3 F2.1 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11 protein-coding 100048976 Wtmq1 mQTL2 - - weight module QTL 1 unknown 676965 Gm9700 Hspd1-16p - 3|3 E1 heat shock protein 1 (chaperonin) pseudogene 16 pseudo 629967 XR_001780124 Gm11677 - - 11|11 E2 predicted gene 11677 pseudo 17242 Mm.906 NM_010784 ENSMUSG00000027239 Mdk MK|Mek - 2 E1|2 50.63 cM midkine protein-coding 213236 Mm.234464 NM_173383 ENSMUSG00000044595 Dnd1 BC034897|RBMS4|Ter - 18 B2|18 19.46 cM DND microRNA-mediated repression inhibitor 1 protein-coding 102182 Mm.197630 NM_178903 ENSMUSG00000037134 Prmt9 AI931714|Prmt10 - 8|8 C1 protein arginine methyltransferase 9 protein-coding 18159 Mm.12802 NM_010933 ENSMUSG00000026241 Nppc CNP|lbab - 1 C5|1 43.98 cM natriuretic peptide type C protein-coding 110779 Hoxd3os Dxoh-3|Hoxd3s - - homeobox D3, opposite strand protein-coding 20435 Siah1-ps1 Sinh-1C|Sinh1-ps1 - 19 D1|19 44.73 cM siah E3 ubiquitin protein ligase 1, pseudogene 1 pseudo 105246306 Mm.411709 XR_876927 Gm41609 - - 17 E1.3|17 predicted gene, 41609 ncRNA 667471 Gm8652 EG667471 - 6|6 A1 predicted gene 8652 pseudo 665235 Gm7547 EG665235 - 9|9 B predicted gene 7547 pseudo 102632726 Gm30722 - - 1|1 predicted gene, 30722 ncRNA 102632839 Mm.450569 XR_378488 Gm30807 - - 7 F3|7 predicted gene, 30807 ncRNA 102640819 XR_385049 Gm36797 - - 16 C4|16 predicted gene, 36797 ncRNA 102640572 Gm29391 - - Y|Y predicted gene 29391 protein-coding 100038722 Mm.484426 Gm10305 - - 4 C6|4 predicted gene 10305 unknown 230796 Mm.226576 NM_199306 ENSMUSG00000037622 Wdtc1 Gm695|adipose|adp - 4|4 D2.3 WD and tetratricopeptide repeats 1 protein-coding 319975 Mm.300603 D630014H12Rik - - 6|6 RIKEN cDNA D630014H12 gene protein-coding 102633049 XR_387932 Gm30968 - - 8 C5|8 predicted gene, 30968 ncRNA 100042739 Obox4-ps21 Gm4001 - 7 A2|7 oocyte specific homeobox 4, pseudogene 21 pseudo 100038498 Mm.484830 Gm10447 - - - predicted gene 10447 unknown 664787 Mm.393891 NR_131980 ENSMUSG00000079222 LOC664787 - - 1|8 Sp110 nuclear body protein pseudogene pseudo 353374 NR_002903 ENSMUSG00000065110 Snord61 MBII-342|Rnu61 - X|X A6 small nucleolar RNA, C/D box 61 snoRNA 19070 Mm.291037 NM_025283 ENSMUSG00000025979 Mob4 2610109B12Rik|Mobkl3|Phocn|Prei3 - 1|1 C1.2 MOB family member 4, phocein protein-coding 12545 Mm.20842 NM_009863 ENSMUSG00000029283 Cdc7 AI597260|Cdc7l1|muCdc7 - 5|5 E5 cell division cycle 7 (S. cerevisiae) protein-coding 52676 D18Ertd665e - - 18 19.17 cM DNA segment, Chr 18, ERATO Doi 665, expressed unknown 319984 Mm.19047 NM_177049 ENSMUSG00000022208 Jph4 9330157P13Rik|JP-4|JPHL1 - 14|14 C3 junctophilin 4 protein-coding 100135655 Gm15681 - - 8|8 D1 protein phosphatase 4, regulatory subunit 1 pseudogene pseudo 100042510 Mm.425636 Gm3877 - - 10 D1|10 predicted gene 3877 unknown 100042762 Obox4-ps30 Gm4016 - 7 A2|7 oocyte specific homeobox 4, pseudogene 30 pseudo 493060 Hbnr1 Hpnr1 - - Heligmosomoides bakeri nematode resistance 1 unknown 100113370 Lctlp1 - - 2 60.68 cM lymph node cytotoxic T lymphocyte percentage 1 unknown 503848 Ear-ps5 - - 14|14 C1 eosinophil-associated, ribonuclease A family, pseudogene 5 pseudo 669429 Gm1840 - - 8|8 A1.1 glucose phosphate isomerase 1 pseudogene pseudo 330790 Mm.152048 NM_177900 ENSMUSG00000007594 Hapln4 9330174O11|Bral2|Lpr4 - 8|8 B3.3 hyaluronan and proteoglycan link protein 4 protein-coding 76418 Gm16530 - - 8|8 A4 family with sequence similarity 58, member B pseudogene pseudo 102637884 XR_381580 Gm34581 - - 12 B3|12 predicted gene, 34581 ncRNA 110004 Dvb11-1 - - - V11<+> T cell deletion 1 protein-coding 94332 Mm.330524 NM_053199 ENSMUSG00000005338 Cadm3 BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1 - 1|1 H3 cell adhesion molecule 3 protein-coding 70074 1700030P01Rik - - 17|17 RIKEN cDNA 1700030P01 gene protein-coding 329950 Mm.291154 NM_001099300 Gm831 - - 4|4 D2.3 predicted gene 831 unknown 100503536 Mm.366960 NR_040297 ENSMUSG00000108237 Gm19757 - - 6 E1|6 48.93 cM predicted gene, 19757 ncRNA 21853 Mm.6458 NM_011589 ENSMUSG00000039994 Timeless C77407|Debt69|tim - 10 D3|10 76.49 cM timeless circadian clock 1 protein-coding 625249 Mm.332810 NM_008162 ENSMUSG00000075706 Gpx4 GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx - 10 C1|10 39.72 cM glutathione peroxidase 4 protein-coding 98962 Mm.482345 AI447567 - - - expressed sequence AI447567 unknown 52196 Mm.386833 D7Ertd187e - - 7 86.14 cM DNA segment, Chr 7, ERATO Doi 187, expressed unknown 102639278 Gm35626 - - 7 F5|7 predicted gene, 35626 pseudo 383735 Gm13870 - - 2|2 E2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105246688 XR_878455 Gm41936 - - 1 E2.3|1 predicted gene, 41936 ncRNA 100043387 Mm.444048 NM_001099327 ENSMUSG00000078878 Gm14305 - - 2 H4|2 predicted gene 14305 protein-coding 100038679 Mm.218590 Gm10431 - - - predicted gene 10431 protein-coding 239436 Mm.208831 NM_172816 ENSMUSG00000022315 Slc30a8 C820002P14Rik|ZnT-8|ZnT8 - 15|15 C solute carrier family 30 (zinc transporter), member 8 protein-coding 12609 Mm.347407 NM_007679 ENSMUSG00000071637 Cebpd c/EBPdelta - 16 A2|16 10.09 cM CCAAT/enhancer binding protein (C/EBP), delta protein-coding 105246776 XR_878724 Gm42015 - - 5 F|5 predicted gene, 42015 ncRNA 102638706 Gm35202 - - 2|2 predicted gene, 35202 ncRNA 384814 Mm.491652 NM_001079931 Gm5347 EG384814 - 8|8 A4 predicted gene 5347 protein-coding 108238 Grb2-ps1 - - - growth factor receptor bound protein 2, pseudogene 1 pseudo 100049081 Bwt1 - - - body weight 1 unknown 15451 Mm.19182 NM_008281 ENSMUSG00000001249 Hpn Hlb320 - 7|7 B1 hepsin protein-coding 232430 Mm.267010 NM_177687 ENSMUSG00000032652 Crebl2 AI046348|B230205M03 - 6|6 G1 cAMP responsive element binding protein-like 2 protein-coding 17035 Mm.2632 NM_016753 ENSMUSG00000047557 Lxn - - 3 E1|3 30.98 cM latexin protein-coding 78657 2900034K13Rik - - - RIKEN cDNA 2900034K13 gene protein-coding 70599 Mm.272881 NM_080558 ENSMUSG00000027007 Ssfa2 5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927 - 2|2 C3 sperm specific antigen 2 protein-coding 102632315 Mm.439444 Gm14232 - - 2|2 63.28 cM predicted gene 14232 ncRNA 28293 D10Jhu66 - - - DNA segment, Chr 10, Johns Hopkins University 66 unknown 244058 Mm.333943 NM_177740 ENSMUSG00000070509 Rgma BC059072|C230063O06 - 7|7 D1 repulsive guidance molecule family member A protein-coding 114540 Bbaa4 Bb4 - 11 50.86 cM B.burgdorferi-associated arthritis 4 unknown 102636761 XR_384071 Gm33743 - - 15 B3.2|15 predicted gene, 33743 ncRNA 102637769 XR_377014 Gm34496 - - 5 C3.2|5 predicted gene, 34496 ncRNA 105245448 Gm40901 - - 12|12 predicted gene, 40901 protein-coding 14110 Fau-ps1 - - 2 G1|2 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived), pseudogene 1 pseudo 61434 D5Mit243 - - 5 67.99 cM DNA segment, Chr 5, Massachusetts Institute of Technology 243 unknown 72219 Mm.233883 NM_028157 ENSMUSG00000050876 Spata31d1a 1700013B16Rik|Fam75d1a|Fam75d3 - 13|13 B2 spermatogenesis associated 31 subfamily D, member 1A protein-coding 102635786 Mm.441477 XR_882379 Gm17029 - - 4 78.87 cM|4 E2 predicted gene 17029 ncRNA 791364 Mm.97466 NR_110441 ENSMUSG00000055408 Hottip Gm15053 - 6 B3|6 Hoxa distal transcript antisense RNA ncRNA 100526470 NR_037226 ENSMUSG00000093037 Mir3066 mir-3066|mmu-mir-3066 - 12 A1.1|12 8.08 cM microRNA 3066 ncRNA 668507 Gm9211 EG668507 - 7|7 B2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102633222 Gm31104 - - 13 D2.2|13 predicted gene, 31104 pseudo 102639240 XR_378173 Gm35596 - - 6 G3|6 predicted gene, 35596 ncRNA 75943 Mm.428747 XR_874598 4930572G02Rik - - 14|14 C1 RIKEN cDNA 4930572G02 gene ncRNA 13605 Mm.261453 NM_007900 ENSMUSG00000027699 Ect2 AI528536 - 3|3 A3 ect2 oncogene protein-coding 97135 C77396 - - - expressed sequence C77396 unknown 77702 9130201A16Rik - - - RIKEN cDNA 9130201A16 gene protein-coding 80986 Mm.22448 NM_001004140 ENSMUSG00000037725 Ckap2 AI461656|AW228814|LB1 - 8|8 A2 cytoskeleton associated protein 2 protein-coding 246082 Mm.390015 NM_139222 ENSMUSG00000048500 Defb15 BD-15 - 8|8 A2 defensin beta 15 protein-coding 100416896 Gm18306 - - 7|7 A3 high mobility group box 3 pseudogene pseudo 56496 Mm.46701 NM_019656 ENSMUSG00000067377 Tspan6 6720473L21Rik|AI316786|T245|TSPAN-6|Tm4sf|Tm4sf6 - X|X E3 tetraspanin 6 protein-coding 78882 Runx2os2 9530072K05Rik - 17|17 runt related transcription factor 2, opposite strand 2 ncRNA 102634111 XR_387669 Gm31773 - - 5 F|5 predicted gene, 31773 ncRNA 105427 AA517858 - - - expressed sequence AA517858 unknown 108167968 XR_001780523 Gm46325 - - 12 A1.1|12 predicted gene, 46325 ncRNA 233919 Mm.208740 NM_173410 ENSMUSG00000040125 Gpr26 9630036A11Rik|A730021D22 - 7|7 F3 G protein-coupled receptor 26 protein-coding 102639461 XR_378178 Gm35768 - - 6 G3|6 predicted gene, 35768 ncRNA 73429 Mm.443313 NR_027899 Hoxd3os1 1700064D17Rik|1700109F18Rik - 2|2 C3 homeobox D3, opposite strand 1 ncRNA 68790 Mm.246916 NR_045471 ENSMUSG00000097336 Fendrr 1110050K14Rik|LL66|linc-Foxf1a|lincFoxf1 - 8|8 E1 Foxf1 adjacent non-coding developmental regulatory RNA ncRNA 102638843 XR_389068 Gm35311 - - 11 E1|11 predicted gene, 35311 ncRNA 105242481 LOC105242481 - - - fibroblast growth factor 21 protein-coding 654309 Mm.442579 NM_001013372 ENSMUSG00000079036 Nrp - - 12|12 D2 neural regeneration protein protein-coding 20292 Mm.4686 NM_011330 ENSMUSG00000020676 Ccl11 Scya11|eotaxin - 11 C|11 49.84 cM chemokine (C-C motif) ligand 11 protein-coding 320633 Mm.383299 NM_199025 ENSMUSG00000050714 Zbtb26 A630026F21Rik - 2|2 B zinc finger and BTB domain containing 26 protein-coding 60950 DXMit62 - - - DNA segment, Chr X, Massachusetts Institute of Technology 62 unknown 105246360 XR_877156 Gm41659 - - 18 A1|18 predicted gene, 41659 ncRNA 102639367 XR_001782643 Gm35697 - - 19 C1|19 predicted gene, 35697 ncRNA 100416321 Gm16111 - - 5|5 A3 ribosomal protein L17 pseudogene pseudo 100039768 Mm.47093 1700024F20Rik Gm2415 - 9 F3|9 RIKEN cDNA 1700024F20 gene unknown 320292 Mm.259074 NM_145839 ENSMUSG00000089809 Rasgef1b 4732452O09Rik|GPIgamma4|Gpig4 - 5|5 E3 RasGEF domain family, member 1B protein-coding 98053 Mm.24632 NM_133801 ENSMUSG00000002658 Gtf2f1 2810405L04Rik|C76800|RAP74 - 17|17 D general transcription factor IIF, polypeptide 1 protein-coding 100302601 NR_028282 ENSMUSG00000077734 Snord83b MBII-10 - 15|15 E1 small nucleolar RNA, C/D box 83B snoRNA 105246543 XR_877750 Gm41817 - - 19 B|19 predicted gene, 41817 ncRNA 73948 4930415P13Rik - - 18|18 RIKEN cDNA 4930415P13 gene protein-coding 109279903 LOC109279903 Mm87 - - VISTA enhancer mm87 biological-region 102633229 XR_880038 Gm31109 - - 11 B5|11 predicted gene, 31109 ncRNA 170939 Mm.188445 NM_133359 ENSMUSG00000057174 Krtap19-9b Krtap16-10b|Krtap16.10L - 16|16 C3.3 keratin associated protein 19-9B protein-coding 22154 Mm.273538 NM_011655 ENSMUSG00000001525 Tubb5 AA408537|AI596182|B130022C14Rik|M(beta)5 - 17|17 B1 tubulin, beta 5 class I protein-coding 56543 Mm.44530 NM_019931 ENSMUSG00000040896 Kcnd3 AW045978|Kncd3|Kv4.3 - 3|3 F2.2 potassium voltage-gated channel, Shal-related family, member 3 protein-coding 666055 Gm7909 EG666055 - 10|10 A4 high mobility group box 2 pseudogene pseudo 109852 H39 H-39 - - histocompatibility 39 protein-coding 100417752 Gm18807 - - 13|13 A5 NLR family, pyrin domain containing 4B pseudogene pseudo 105247271 Gm42399 - - 7|7 predicted gene, 42399 ncRNA 100526546 NR_037228 ENSMUSG00000105428 Mir3068 mir-3068|mmu-mir-3068 - 12 D2|12 41.66 cM microRNA 3068 ncRNA 236733 Mm.34489 NM_145628 ENSMUSG00000031066 Usp11 6230415D12Rik|mKIAA4085 - X|X A1.3 ubiquitin specific peptidase 11 protein-coding 208650 Mm.328206 NM_001033238 ENSMUSG00000022637 Cblb AI429560|AI851073|Cbl-b - 16|16 B5 Casitas B-lineage lymphoma b protein-coding 320847 D330040H18Rik - - 16|16 RIKEN cDNA D330040H18 gene protein-coding 83964 Mm.28770 NM_023277 ENSMUSG00000031990 Jam3 1110002N23Rik|JAM-3|JAM-C|Jcam3 - 9|9 A4 junction adhesion molecule 3 protein-coding 53404 Mm.228661 NM_016864 ENSMUSG00000036816 Atoh7 Math5|bHLHa13 - 10 B4|10 32.54 cM atonal bHLH transcription factor 7 protein-coding 100416816 Gm18274 - - 14|14 E3 predicted gene, 18274 pseudo 70715 Mm.491457 6330405D24Rik - - 2|2 E5 RIKEN cDNA 6330405D24 gene unknown 108482 Ms91 MMS91 - - minisatellites detected by probe MMS91 other 666612 Gm8189 - - 19|19 A predicted gene 8189 pseudo 76143 6230426I18Rik - - 2|2 A3 RIKEN cDNA 6230426I18 gene protein-coding 102637511 XR_375707 ENSMUSG00000103476 Gm34302 - - 3 E1|3 predicted gene, 34302 ncRNA 102633168 XR_391860 ENSMUSG00000100875 Gm28987 - - Y A2|Y predicted gene 28987 ncRNA 100043892 Gm14222 - - 2|2 H2 predicted gene 14222 protein-coding 404316 Mm.246537 NM_207622 ENSMUSG00000070378 Olfr403 IA7|MOR125-5_p|Olfr43 - 11|11 B5 olfactory receptor 403 protein-coding 101488 Mm.11249 NM_175316 ENSMUSG00000030737 Slco2b1 AI060904|AI852653|OATP-B|Slc21a9 - 7|7 E1 solute carrier organic anion transporter family, member 2b1 protein-coding 108167771 Gm46190 - - 10 B3|10 putative heat shock protein HSP 90-beta-3 pseudo 102634523 XR_381414 Gm32084 - - 12 A2|12 predicted gene, 32084 ncRNA 112406 Mm.29978 NM_053208 ENSMUSG00000058709 Egln2 0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20 - 7 A3|7 15.83 cM egl-9 family hypoxia-inducible factor 2 protein-coding 102639420 XR_001778744 Gm35740 - - 8 A1.3|8 predicted gene, 35740 ncRNA 13600 Eclb ecl - 4 69.05 cM epistatic circling B C57L/J unknown 62684 D7Mit1002 D16Mit118 - 7 63.44 cM DNA segment, Chr 7, Massachusetts Institute of Technology 1002 unknown 100502582 Gm10923 - - 15 E2|15 40.25 cM ribosomal protein L23A pseudogene pseudo 102638766 XR_389317 Gm35251 - - 5 E1|5 predicted gene, 35251 ncRNA 112023 Bw12 - - - body weight QTL 12 unknown 85098 D7Mit264 - - 7 12.58 cM DNA segment, Chr 7, Massachusetts Institute of Technology 264 unknown 381549 Mm.331840 NM_001005788 ENSMUSG00000064141 Zfp69 Gm1029|Krab2|Zfp63 - 4 D2.2|4 56.66 cM zinc finger protein 69 protein-coding 94186 Mm.65979 NM_052973 ENSMUSG00000020954 Strn3 Gs2na|SG2NA - 12|12 B3 striatin, calmodulin binding protein 3 protein-coding 77870 Mm.246718 E130116L18Rik - - 5|5 A3 RIKEN cDNA E130116L18 gene protein-coding 102635389 LOC102635389 - - 4 B1 tumor suppressor candidate 2 pseudogene pseudo 208884 Mm.207367 NM_172465 ENSMUSG00000036985 Zdhhc9 6430508G22|9530098M12Rik - X|X A5 zinc finger, DHHC domain containing 9 protein-coding 108167597 XM_017313069 8430432A02Rik - - 1|1 B RIKEN cDNA 8430432A02 gene protein-coding 110054 Gt10 - - - gene trap insertion site 10 unknown 105246354 XR_877117 Gm41654 - - 17 E5|17 predicted gene, 41654 ncRNA 61574 DXMit176 - - X 37.3 cM DNA segment, Chr X, Massachusetts Institute of Technology 176 unknown 67009 Mm.249356 NM_025905 ENSMUSG00000030555 Ttc23 1600012K10Rik - 7|7 C tetratricopeptide repeat domain 23 protein-coding 100035329 Nilac2 - - 11 52.22 cM nicotine induced locomotor activity 2 unknown 108168633 LOC108168633 - - Y A1 Y-linked testis-specific protein 1-like pseudo 102635808 XR_379802 Gm33054 - - 9 F1|9 predicted gene, 33054 ncRNA 404483 Olfr1172-ps1 GA_x5J8B7W4NS2-380558-381346 - 2|2 D olfactory receptor 1172, pseudogene 1 pseudo 108168031 Gm46379 - - 12 F1|12 DNA repair protein SWI5 homolog pseudogene pseudo 319278 Mm.249932 NM_175687 ENSMUSG00000038884 A230050P20Rik RyDEN - 9|9 A3 RIKEN cDNA A230050P20 gene protein-coding 100503568 Gm10602 - - 7|7 54.67 cM predicted gene 10602 ncRNA 102635463 XR_389630 Gm32795 - - 3 A3|3 predicted gene, 32795 ncRNA 102634172 Gm31821 - - 4|4 predicted gene, 31821 ncRNA 108168068 XR_001780872 Gm11274 - - 13 A3.1|13 7.96 cM predicted gene 11274 ncRNA 110873 Ltrm3 Ltrm-3 - - LTR mink cell focus forming murine leukemia viral locus 3 protein-coding 100042889 Mm.440109 NR_040446 ENSMUSG00000080727 C920021L13Rik - - 3 F2.1|3 RIKEN cDNA C920021L13 gene ncRNA 320235 A130012E19Rik - - 10|10 D2 RIKEN cDNA A130012E19 gene protein-coding 12843 Mm.277792 NM_007743 ENSMUSG00000029661 Col1a2 AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim - 6 A1|6 1.81 cM collagen, type I, alpha 2 protein-coding 666856 Mm.442827 Gm8327 EG666856 - 13|13 C1 predicted gene 8327 unknown 105245243 XR_871903 Gm40722 - - 10 C1|10 predicted gene, 40722 ncRNA 52513 Mm.29810 NM_026538 ENSMUSG00000004393 Ddx56 2600001H07Rik|D11Ertd619e|Noh61 - 11 A1|11 3.94 cM DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 protein-coding 108511971 Zfpm1r19-zfpm1r14 Zfpm1R14|Zfpm1R19 - 8 E1 Zfpm1R19 and Zfpm1R14 erythroid cis-regulatory modules biological-region 665146 Gm7517 EG665146 - 15|15 B3.3 Ewing sarcoma breakpoint region 1 pseudogene pseudo 102465224 NR_105841 ENSMUSG00000098756 Mir378d Gm27650|mmu-mir-378d - 10|10 D3 microRNA 378d ncRNA 14218 Mm.127560 NM_008018 ENSMUSG00000053617 Sh3pxd2a 2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5 - 19|19 C3 SH3 and PX domains 2A protein-coding 101056113 Gm29781 - - 6 E2|6 predicted gene, 29781 pseudo 112163562 Mm.440634 BE457698 - - - expressed sequence BE457698 protein-coding 100042550 Gm20926 - - Y|Y predicted gene, 20926 protein-coding 100628582 NR_039566 ENSMUSG00000093003 Mir3473c mmu-mir-3473c - 1 H6|1 97.11 cM microRNA 3473c ncRNA 668203 Gm9044 EG668203 - 10|10 D2 predicted gene 9044 pseudo 62408 D16Mit163 - - 16 3.41 cM DNA segment, Chr 16, Massachusetts Institute of Technology 163 unknown 622315 Gm12717 - - 4|4 C6 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 667768 Mm.244966 NR_046041 ENSMUSG00000085034 Gm11240 - - 4|4 C3 predicted gene 11240 ncRNA 100035663 917M Bnszq1 - - 917M unknown 492999 Lvrq6 - - - liver weight QTL 6 unknown 52768 D6Wsu189e - - - DNA segment, Chr 6, Wayne State University 189, expressed unknown 100417196 Gm18442 - - 12|12 A3 ribosomal protein, large, P0 pseudogene pseudo 320111 Mm.442510 NM_178774 ENSMUSG00000055945 Prr18 9630019K15Rik - 17|17 A1 proline rich 18 protein-coding 100124567 Vmn2r-ps77 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 77 pseudo 665523 Gm7672 EG665523 - 10 A3|10 predicted gene 7672 pseudo 17295 Mm.86844 NM_008591 ENSMUSG00000009376 Met AI838057|HGF|HGFR|Par4|c-Met - 6 A2|6 7.83 cM met proto-oncogene protein-coding 102631782 XR_874516 Gm30031 - - 14 B|14 predicted gene, 30031 ncRNA 16558 Mm.251934 NM_001081133 ENSMUSG00000038844 Kif16b 8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590 - 2|2 G1 kinesin family member 16B protein-coding 207792 Mm.29270 XM_148974 ENSMUSG00000033722 BC034090 6820428L09|mKIAA1614 - 1|1 G3 cDNA sequence BC034090 protein-coding 19735 Mm.28262 NM_009061 ENSMUSG00000026360 Rgs2 GOS8 - 1 F|1 62.56 cM regulator of G-protein signaling 2 protein-coding 102465584 NR_105934 ENSMUSG00000098510 Mir6968 Gm27666|mmu-mir-6968 - 17|17 A3.3 microRNA 6968 ncRNA 64899 Mm.292111 NM_022883 ENSMUSG00000027412 Lpin3 9130206L11Rik|AA438110|AV236139|mKIAA4023 - 2|2 H2 lipin 3 protein-coding 595141 Gm6045 EG595141|Ppia-ps25 - 15|15 B3.1 peptidylprolyl isomerase A pseudogene 25 pseudo 493110 Bpq8 - - 1 69.75 cM blood pressure QTL 8 unknown 229905 Mm.289643 NM_173763 ENSMUSG00000040213 Kyat3 Ccbl2|KATIII|Kat3 - 3|3 H1 kynurenine aminotransferase 3 protein-coding 100125397 Femwf2 - - - femur work to failure 2 unknown 105245859 XR_874964 Gm41248 - - 14 E4|14 predicted gene, 41248 ncRNA 223864 Mm.24028 NM_144850 ENSMUSG00000022469 Rapgef3 2310016P22Rik|9330170P05Rik|Epac|Epac1 - 15|15 F1 Rap guanine nucleotide exchange factor (GEF) 3 protein-coding 60775 D3Mit10 - - 3 43.03 cM DNA segment, Chr 3, Massachusetts Institute of Technology 10 unknown 171486 Mm.283879 NM_138309 ENSMUSG00000035776 Cd99l2 AW548191|Mic2l1|Xap89 - X|X A7.3 CD99 antigen-like 2 protein-coding 15365 Mm.441435 NR_037996 Hmga2-ps1 EG666235|Gm7996|Hmgic-ps1|[y]i-c - 1|1 H4 high mobility group AT-hook 2, pseudogene 1 pseudo 58859 Mm.276367 NM_021474 ENSMUSG00000024909 Efemp2 0610011K11Rik|Fbln4|MBP1 - 19|19 A epidermal growth factor-containing fibulin-like extracellular matrix protein 2 protein-coding 319988 A130086K04Rik - - 10|10 RIKEN cDNA A130086K04 gene protein-coding 100038612 Mm.367647 Gm10682 - - - predicted gene 10682 protein-coding 72949 Mm.268672 NM_028399 ENSMUSG00000026349 Ccnt2 2900041I18Rik|C81304|CycT2|CycT2a|CycT2b - 1|1 E3 cyclin T2 protein-coding 692105 Igkv13-54-1 gy33r - 6|6 C1 immunoglobulin kappa chain variable 13-54-1 pseudo 102638655 Gm20476 - - 7|7 54.55 cM predicted gene 20476 ncRNA 102632361 XR_390823 Gm30453 - - 4 D3|4 predicted gene, 30453 ncRNA 100036176 Ity7 - - - immunity to S. typhimurium 7 unknown 102636287 Gm33395 - - 11|11 predicted gene, 33395 ncRNA 18028 Mm.317947 NM_008687 ENSMUSG00000008575 Nfib 6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B - 4 C3|4 38.4 cM nuclear factor I/B protein-coding 76507 Mm.213898 NM_029638 ENSMUSG00000029811 Aoc1 1600012D06Rik|Abp1|DAO - 6 B2.3|6 23.78 cM amine oxidase, copper-containing 1 protein-coding 18858 Mm.1237 NM_008885 ENSMUSG00000018217 Pmp22 22kDa|Gas-3|HNPP|TRE002|Tr|trembler - 11 B3|11 38.99 cM peripheral myelin protein 22 protein-coding 22034 Mm.292729 NM_009424 ENSMUSG00000027164 Traf6 2310003F17Rik|AI851288|C630032O20Rik - 2|2 E2 TNF receptor-associated factor 6 protein-coding 67388 Mm.29264 NM_026124 ENSMUSG00000027637 1110008F13Rik AI316789 - 2|2 H1 RIKEN cDNA 1110008F13 gene protein-coding 97151 C78914 - - - expressed sequence C78914 protein-coding 102640507 XR_382179 Gm36549 - - 13 A3.3|13 predicted gene, 36549 ncRNA 102639138 Mm.413044 XR_379024 ENSMUSG00000109579 Gm35521 Gm45511 - 8 B3.1|8 predicted gene, 35521 ncRNA 100418479 Gm19237 - - 6|6 B3 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene pseudo 105244768 XR_868503 Gm40320 - - 5 F|5 predicted gene, 40320 ncRNA 100270744 Mm.393636 NM_001145100 ENSMUSG00000086598 Btbd18 Btbd18-ps|Gm13718 - 2 D|2 BTB (POZ) domain containing 18 protein-coding 666441 Gm8107 EG666441 - X A6|X predicted gene 8107 pseudo 224572 Mm.469856 NM_001104564 ENSMUSG00000095961 Vmn2r102 EG224572 - 17|17 A3.2 vomeronasal 2, receptor 102 protein-coding 100417106 Gm12004 - - 11|11 A1 serine/threonine kinase 16 pseudogene pseudo 16454 jb - - - juvenile bare unknown 106823 D930007N19Rik AW742224 - - RIKEN cDNA D930007N19 gene protein-coding 258830 Mm.424090 NM_146833 ENSMUSG00000049618 Olfr103 MOR250-3|MOR250-8_p - 17|17 B1 olfactory receptor 103 protein-coding 53677 DYByu2 D0Byu2 - - DNA segment, Chr Y, Brigham Young University 2 unknown 94094 Mm.326945 NM_030684 ENSMUSG00000056144 Trim34a Trim34|Trim34-1 - 7|7 E3 tripartite motif-containing 34A protein-coding 108168219 XM_017316816 Gm46500 - - 15 E1|15 predicted gene, 46500 protein-coding 493105 Tswt - - X 61.35 cM testis weight unknown 723968 NR_029818 ENSMUSG00000093238 Mir9-3 Mirn9-3|mir-9-3|mmu-mir-9-3 - 7|7 D2 microRNA 9-3 ncRNA 435792 Gm12634 - - 4|4 C5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 72654 Mm.249115 NM_028312 ENSMUSG00000019659 Ccdc12 2700094L05Rik|C76605 - 9|9 F2 coiled-coil domain containing 12 protein-coding 68515 Mm.194594 NM_026751 ENSMUSG00000025141 Myadml2 1110012N22Rik - 11|11 E2 myeloid-associated differentiation marker-like 2 protein-coding 319931 Mm.446730 NR_045329 ENSMUSG00000097591 A330032B11Rik - - 19|19 C2 RIKEN cDNA A330032B11 gene ncRNA 207216 Rpl7l1-ps1 EG207216|Gm4749|Rpl7l1-ps - X|X A6 ribosomal protein L7-like 1, pseudogene 1 pseudo 360107 D17Brg30 - - - DNA segment, Chr 17, David E. Bergstrom 30 unknown 61225 D1Mit230 - - 1 5.7 cM DNA segment, Chr 1, Massachusetts Institute of Technology 230 unknown 100039744 Gm2399 - - 13|13 A1 predicted gene 2399 protein-coding 102635515 Gm29142 - - Y|Y predicted gene 29142 protein-coding 102633695 Gm31457 - - 6|6 predicted gene, 31457 ncRNA 111213 Tpi-rs7 Tpi-7 - - triosephosphate isomerase related sequence 7 pseudo 270086 Mm.251085 NM_177767 ENSMUSG00000033009 Ogfod1 4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612 - 8|8 C5 2-oxoglutarate and iron-dependent oxygenase domain containing 1 protein-coding 12095 Mm.482191 NM_031368 ENSMUSG00000074489 Bglap3 AI461847|Bglap-rs1|OC-X|ORG|mOC-X - 3 F1|3 38.81 cM bone gamma-carboxyglutamate protein 3 protein-coding 107579 Nr1d2-rs1 Rerbb-rs1 - - nuclear receptor subfamily 1, group D, member 2, related sequence 1 protein-coding 108550 Iapls2-26 - - - intracisternal A particle, lymphocyte specific 2-26 other 108168041 Gm46384 - - 13 A5|13 predicted gene, 46384 pseudo 140579 Mm.35064 NM_080287 ENSMUSG00000017670 Elmo2 1190002F24Rik|CED-12 - 2|2 H3 engulfment and cell motility 2 protein-coding 100418107 Gm15371 - - 1|1 D predicted gene 15371 pseudo 102467524 n-TEttc4 n-Te14 - 14 D3|14 nuclear encoded tRNA glutamic acid 4 (anticodon TTC) tRNA 75531 Mm.159534 1700025H01Rik - - 16|16 B2 RIKEN cDNA 1700025H01 gene protein-coding 102467310 n-TGgcc3 n-Tg11 - 1 C4|1 nuclear encoded tRNA glycine 3 (anticodon GCC) tRNA 21388 Mm.103636 NM_011537 ENSMUSG00000018263 Tbx5 - - 5 F|5 60.42 cM T-box 5 protein-coding 14603 Mm.456 NM_008118 ENSMUSG00000024682 Gif AV073125 - 19|19 A gastric intrinsic factor protein-coding 56208 Mm.178947 NM_019584 ENSMUSG00000035086 Becn1 Atg6 - 11|11 D beclin 1, autophagy related protein-coding 240168 Mm.329203 NM_207246 ENSMUSG00000071042 Rasgrp3 BC066069|Gm327 - 17|17 E2 RAS, guanyl releasing protein 3 protein-coding 67249 Mm.28823 NM_144517 ENSMUSG00000039178 Tbc1d19 2810453K03Rik - 5|5 C1 TBC1 domain family, member 19 protein-coding 100415973 Gm17845 - - X|X F3 importin 5 pseudogene pseudo 546166 Mm.423960 NM_001024730 Gm5922 EG546166 - 9 F4|9 predicted gene 5922 unknown 74002 Mm.196944 NM_028707 ENSMUSG00000024347 Psd2 6330404E20Rik|AW125584|EFA6C - 18|18 B2 pleckstrin and Sec7 domain containing 2 protein-coding 18687 Mm.432036 NM_008833 Phxr2 SP28 - 10|10 C3 per-hexamer repeat gene 2 ncRNA 100418444 Gm19216 - - 14|14 D1 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 pseudogene pseudo 17979 Mm.469663 NM_008679 ENSMUSG00000027678 Ncoa3 2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip - 2|2 H3 nuclear receptor coactivator 3 protein-coding 224044 Mm.276400 NM_183158 ENSMUSG00000022818 Cyp2ab1 EG224044|F730023N20 - 16 A3|16 cytochrome P450, family 2, subfamily ab, polypeptide 1 protein-coding 15208 Mm.137268 NM_010419 ENSMUSG00000048001 Hes5 bHLHb38 - 4 E2|4 86.01 cM hes family bHLH transcription factor 5 protein-coding 723948 NR_030403 ENSMUSG00000076252 Mir302b Mirn302b|mir-302b - 3|3 G2 microRNA 302b ncRNA 76585 Mm.291782 NM_029667 ENSMUSG00000068888 Lce1i 2310069N01Rik - 3|3 F1 late cornified envelope 1I protein-coding 108167950 LOC108167950 - - 12 A1.2 zinc finger protein 431-like pseudo 105242754 Gm38886 - - 6|6 predicted gene, 38886 ncRNA 625660 Gm6611 EG625660 - 16|16 B3 predicted gene 6611 pseudo 100036080 Idd23 - - - insulin dependent diabetes susceptibility 23 unknown 102638854 NR_155869 Gm15934 - - 10 B2|10 23.44 cM predicted gene 15934 ncRNA 105244531 XR_867569 Gm40124 - - 3 G1|3 predicted gene, 40124 ncRNA 102637379 XR_373689 Gm34207 - - 1 H2.3|1 predicted gene, 34207 ncRNA 76992 Mm.440546 NR_045726 ENSMUSG00000036162 Fam219aos 1700066J24Rik - 4|4 A5 family with sequence similarity 219, member A, opposite strand ncRNA 66826 Mm.268483 NM_181516 ENSMUSG00000009995 Taz 5031411C02Rik|9130012G04Rik|AW107266|AW552613|G4.5 - X A7.3|X 37.95 cM tafazzin protein-coding 22045 Mm.309350 NM_013696 ENSMUSG00000038760 Trhr TRH-R1 - 15 B3.2|15 16.82 cM thyrotropin releasing hormone receptor protein-coding 102634311 Gm31924 - - 11|11 predicted gene, 31924 protein-coding 384470 Gm5315 EG384470 - 6|6 E1 SURP and G patch domain containing 1 pseudogene pseudo 108195 Rpl37a-ps1 L37a-psg - - ribosomal protein L37a, pseudogene 1 pseudo 76642 Mm.424420 NR_045997 ENSMUSG00000096935 1700113A16Rik 2210408E11Rik|AA408983 - 3|3 F1 RIKEN cDNA 1700113A16 gene ncRNA 69915 2610509F24Rik - - 9|9 RIKEN cDNA 2610509F24 gene protein-coding 402775 Mm.450482 D130095D21Rik - - 12|12 RIKEN cDNA D130095D21 gene protein-coding 29876 Mm.257765 NM_013885 ENSMUSG00000037242 Clic4 D0Jmb3|TU-74|mc3s5|mtCLIC - 4|4 D3 chloride intracellular channel 4 (mitochondrial) protein-coding 112163678 LOC112163678 - - - Tctex1 domain containing 2 pseudogene pseudo 320351 Mm.86546 NM_177140 ENSMUSG00000046675 Tmem251 D230037D09Rik - 12|12 E transmembrane protein 251 protein-coding 320996 D130047N11Rik - - 4|4 RIKEN cDNA D130047N11 gene protein-coding 27799 D2Dcr6 - - - DNA segment, Chr 2, Derry C. Roopenian 6 unknown 98884 Mm.436790 AI225934 - - - expressed sequence AI225934 protein-coding 74743 Mm.441053 XR_870010 5830403F22Rik - - 7|7 F3 RIKEN cDNA 5830403F22 gene ncRNA 105246339 Mm.415505 XR_877055 Gm41640 - - 17 E4|17 predicted gene, 41640 ncRNA 27705 D1Dau12 - - - DNA segment, Chr 1, DA Underhill 12 unknown 105247034 XR_880800 Gm42216 - - 3 B|3 predicted gene, 42216 ncRNA 791284 Mm.483752 Gm10152 - - - predicted gene 10152 unknown 668516 Gm9218 EG668516 - X|X D predicted gene 9218 pseudo 241112 Mm.310460 NM_001033345 ENSMUSG00000073650 Catip Gm216 - 1|1 C3 ciliogenesis associated TTC17 interacting protein protein-coding 100041283 XR_001781352 Gm3252 - - 14 A1|14 predicted gene 3252 pseudo 226781 Mm.227117 NM_001033286 ENSMUSG00000026614 Slc30a10 E130106K10Rik|Gm212 - 1|1 H5 solute carrier family 30, member 10 protein-coding 108160 Mm.4370 NM_138607 ENSMUSG00000001962 Fam50a D0HXS9928E|XAP-5 - X|X A7.3 family with sequence similarity 50, member A protein-coding 105244192 Gm39844 - - 2|2 predicted gene, 39844 ncRNA 100862231 Gm21939 - - 12 D2|12 RNA exonuclease 1 homolog pseudo 74650 4930433M22Rik - - 19|19 RIKEN cDNA 4930433M22 gene protein-coding 30936 Mm.284433 NM_021053 ENSMUSG00000028386 Slc46a2 5430429N04Rik|Ly110|TSO-1C12|Tscot - 4 B3|4 32.81 cM solute carrier family 46, member 2 protein-coding 102636699 XR_001779189 Gm33699 - - 9 B|9 predicted gene, 33699 ncRNA 108223 Clns1a-ps1 Clci-ps1|Clcni-ps1 - - chloride channel, nucleotide-sensitive, 1A, pseudogene 1 pseudo 51926 D2Ertd623e - - 2 2.86 cM DNA segment, Chr 2, ERATO Doi 623, expressed unknown 228769 Mm.146984 NM_144889 ENSMUSG00000032869 Psmf1 AW048666|BC012260|PI31 - 2|2 G3 proteasome (prosome, macropain) inhibitor subunit 1 protein-coding 100417724 Gm18785 - - 14|14 B potassium channel modulatory factor 1 pseudogene pseudo 140859 Mm.23788 NM_080849 ENSMUSG00000017405 Nek8 4632401F23Rik|b2b1449Clo|jck - 11 B5|11 46.74 cM NIMA (never in mitosis gene a)-related expressed kinase 8 protein-coding 545640 Gm14138 - - 2|2 E5 40S ribosomal protein S6 (Phosphoprotein NP33) pseudo 277250 Mm.277906 NM_029518 ENSMUSG00000038773 Kdm3b 5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082 - 18|18 B1 KDM3B lysine (K)-specific demethylase 3B protein-coding 100040200 Gm12358 - - 11|11 D predicted gene 12358 pseudo 67518 Mm.376343 NR_152103 ENSMUSG00000097933 1700039M10Rik - - 14|14 C3 RIKEN cDNA 1700039M10 gene ncRNA 75086 Mm.390616 NR_036596 ENSMUSG00000113463 4930520P13Rik - - 13|13 C1 RIKEN cDNA 4930520P13 gene ncRNA 54326 Mm.2567 NM_019423 ENSMUSG00000021364 Elovl2 AI317360|Ssc2 - 13|13 A3.3 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2 protein-coding 100534325 Gm38429 - - 13|13 B3 predicted gene, 38429 pseudo 100417344 Gm18547 - - 2|2 A1 cyclin B1 interacting protein 1 pseudogene pseudo 108168683 XM_017318916 ENSMUSG00000094383 LOC108168683 - - - PRAME family member 8-like protein-coding 100043883 Gm4708 - - 17 E2|17 predicted gene 4708 pseudo 435912 Gm5723 EG435912 - 6|6 D2 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 105245997 Gm41364 - - 15|15 predicted gene, 41364 ncRNA 59027 Mm.202727 NM_021524 ENSMUSG00000020572 Nampt 1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin - 12|12 A3 nicotinamide phosphoribosyltransferase protein-coding 338362 Mm.41163 NM_177387 ENSMUSG00000047712 Ust D930010O20Rik|UA2OST - 10|10 A1 uronyl-2-sulfotransferase protein-coding 102635939 XR_378624 Gm33148 Gm45621 - 7 F5|7 predicted gene, 33148 ncRNA 77675 Mm.98331 NR_029464 ENSMUSG00000113769 5033406O09Rik 9130204G15Rik - 12|12 F1 RIKEN cDNA 5033406O09 gene ncRNA 62610 D13Mit157 - - 13 31.88 cM DNA segment, Chr 13, Massachusetts Institute of Technology 157 unknown 105244253 XR_866597 Gm39895 - - 2 E2|2 predicted gene, 39895 ncRNA 404381 Olfr369-ps1 GA_x5J8B7W3M6R-403436-402959 - 9|9 A1 olfactory receptor 369, pseudogene 1 pseudo 102637411 XR_879899 Gm38498 - - 11 B1.3|11 predicted gene, 38498 ncRNA 52186 D8Ertd158e - - 8 56.08 cM DNA segment, Chr 8, ERATO Doi 158, expressed protein-coding 68576 Mm.290035 NM_026774 ENSMUSG00000087260 Lamtor5 1110003H18Rik|Hbxip|XIP - 3|3 F2.3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 protein-coding 100038550 Mm.28835 Gm10703 - - - predicted gene 10703 protein-coding 635275 Oat-rs1 EG667523|Gm16453|Gm7154 - X A7.3|X 38.3 cM ornithine aminotransferase related sequence 1 pseudo 639207 Cyp2c73-ps EG639207 - 14|14 D3 cytochrome P450, family 2, subfamily c, polypeptide 73, pseudogene pseudo 625810 XR_001780514 Gm6626 - - 12|12 A1.2 predicted gene 6626 ncRNA 78445 Mm.44383 NR_045701 ENSMUSG00000097093 C330013E15Rik - - 15|15 F1 RIKEN cDNA C330013E15 gene ncRNA 67044 Mm.29353 NM_025933 ENSMUSG00000025868 Higd2a 2010110M21Rik|AA690237 - 13|13 B1 HIG1 domain family, member 2A protein-coding 18020 Mm.1389 NM_010900 ENSMUSG00000030722 Nfatc2ip D7Ertd304e|NIP45 - 7 F3|7 69.01 cM nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein protein-coding 26992 Mm.5400 NM_012047 ENSMUSG00000031660 Brd7 BP75|CELTIX1|Ptpn13ip - 8|8 C3 bromodomain containing 7 protein-coding 23827 Mm.227549 NM_011794 ENSMUSG00000026617 Bpnt1 BPntase - 1|1 H5 bisphosphate 3'-nucleotidase 1 protein-coding 62484 D10Mit113 - - 10 34.95 cM DNA segment, Chr 10, Massachusetts Institute of Technology 113 unknown 67911 Mm.251375 NM_026450 ENSMUSG00000050954 Zfp169 1700025J14Rik|4930429A13Rik|BE688704 - 13|13 A5 zinc finger protein 169 protein-coding 102640076 XR_374616 Gm36231 Gm45622 - 2 C2|2 predicted gene, 36231 ncRNA 100379259 Mm.30038 Gm10300 - - 4 D2.3|4 64.71 cM predicted gene 10300 unknown 100417613 Gm7543 EG665219 - 15|15 C predicted gene 7543 pseudo 80385 Mm.21739 NM_019742 ENSMUSG00000010054 Tusc2 1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2 - 9|9 F1 tumor suppressor candidate 2 protein-coding 14792 Mm.273915 NM_145130 ENSMUSG00000004270 Lpcat3 C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG - 6 F2|6 59.17 cM lysophosphatidylcholine acyltransferase 3 protein-coding 100417950 Gm18916 - - 3|3 G1 family with sequence similarity 98, member B pseudogene pseudo 100534278 LOC100534278 - - 13|13 C3 acylglycerol kinase pseudogene pseudo 100038971 XR_882330 Gm20792 - - Y|Y C1 predicted gene, 20792 ncRNA 62275 D19Mit30 - - 19 21.34 cM DNA segment, Chr 19, Massachusetts Institute of Technology 30 unknown 216156 Mm.35828 NM_175450 ENSMUSG00000035754 Wdr18 2310012I10Rik|AU044733|AW122032 - 10|10 C1 WD repeat domain 18 protein-coding 100416053 Gm17893 - - 2|2 B nucleoporin 37 pseudogene pseudo 105244240 XR_866564 Gm39883 - - 2 E1|2 predicted gene, 39883 ncRNA 434024 Igkv1-122 Gm16798|bl1 - 6|6 C1 immunoglobulin kappa chain variable 1-122 other 73690 Mm.173790 NM_028608 ENSMUSG00000056888 Glipr1 2410114O14Rik|RTVP-1|RTVP1|mRTVP-1 - 10|10 D2 GLI pathogenesis-related 1 (glioma) protein-coding 102638476 XR_374952 Gm35029 - - 2 F1|2 predicted gene, 35029 ncRNA 102467235 n-TAcgc1 n-Ta20 - - nuclear encoded tRNA alanine 1 (anticodon CGC) tRNA 545798 Mm.483995 NM_001101546 ENSMUSG00000079278 Tmem233 DSPB2|Gm13843 - 5|5 F transmembrane protein 233 protein-coding 111520 Pmv18 Env-35|Pmv-18|Xmmv-35 - - polytropic murine leukemia virus 18 other 76527 Mm.77697 NM_029646 ENSMUSG00000031750 Il34 2010004A03Rik|AI593503 - 8|8 E1 interleukin 34 protein-coding 433235 Gm5517 EG433235 - 19|19 C1 peptidylprolyl isomerase A pseudogene chr19_428.1 pseudo 240332 Mm.39846 NM_201353 ENSMUSG00000052026 Slc6a7 AW455934|PROT - 18|18 E1 solute carrier family 6 (neurotransmitter transporter, L-proline), member 7 protein-coding 69942 Mm.307182 NM_153503 ENSMUSG00000036537 Rnf113a1 2810428C21Rik|Rnf113a - X|X A3.3 ring finger protein 113A1 protein-coding 100124582 Vmn2r-ps135 - - 19|19 A vomeronasal 2, receptor, pseudogene 135 pseudo 102640277 LOC102640277 - - 16 B1 60S ribosomal protein L12 pseudogene pseudo 100418187 Gm11404 - - 4|4 C1 ChaC, cation transport regulator homolog 2 pseudogene pseudo 210673 Mm.133060 NM_172487 ENSMUSG00000045009 Prrt3 6330505P20|B230206N24Rik - 6|6 E3 proline-rich transmembrane protein 3 protein-coding 70825 4633401L03Rik - - 11|11 RIKEN cDNA 4633401L03 gene protein-coding 22445 Mm.475098 NM_011726 ENSMUSG00000057836 Xlr3a Xlr3 - X A7.3|X 37.29 cM X-linked lymphocyte-regulated 3A protein-coding 67179 Mm.214576 NM_145944 ENSMUSG00000022035 Ccdc25 2610528H13Rik|NSrp70 - 14|14 D1 coiled-coil domain containing 25 protein-coding 100124437 NR_030556 ENSMUSG00000105372 Mir327 Mirn327|mmu-mir-327 - 14 C1|14 microRNA 327 ncRNA 383450 Gm5246 EG383450 - 19|19 C3 3-phosphoglycerate dehydrogenase pseudogene pseudo 112295 Lmb1 - - 4 57.76 cM lupus in MRL and B6 F2 cross, QTL 1 unknown 552874 Mm.35227 LOC552874 - - - uncharacterized LOC552874 unknown 109186 6720427I07Rik - - 13|13 RIKEN cDNA 6720427I07 gene protein-coding 19526 Rb(3.5)1Icg Rb1Icg - - Robertsonian translocation, Chr 3 and 5, Inst of Cytology and Genetics Novosibirsk 1 other 102635091 XM_011239910 Gm32514 - - 2 E1|2 predicted gene, 32514 pseudo 18106 Mm.2299 NM_018729 ENSMUSG00000004709 Cd244 2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4 - 1 H3|1 79.52 cM CD244 natural killer cell receptor 2B4 protein-coding 668850 Rpl31-ps16 EG668850|Gm9401 - 17 E4|17 ribosomal protein L31, pseudogene 16 pseudo 668941 Gm14173 - - 2 H1|2 ribosomal protein L37a pseudogene pseudo 103098 Mm.458408 NM_175328 ENSMUSG00000019894 Slc6a15 AA536730|AI326450|AI326451|v7-3 - 10|10 D1 solute carrier family 6 (neurotransmitter transporter), member 15 protein-coding 97880 C80143 - - - expressed sequence C80143 protein-coding 78103 Mm.445198 NR_002849 8430431K14Rik - - 19|19 C1 RIKEN cDNA 8430431K14 gene ncRNA 69769 Mm.34368 NM_027206 ENSMUSG00000013707 Tnfaip8l2 1810019A08Rik|AW610835|TIPE2 - 3|3 F2.1 tumor necrosis factor, alpha-induced protein 8-like 2 protein-coding 71368 Mm.66246 NR_131001 ENSMUSG00000108322 5430431A17Rik Gm45123 - 7|7 B3 RIKEN cDNA 5430431A17 gene ncRNA 666097 Gm7927 EG666097 - X|X A5 predicted gene 7927 pseudo 15442 Mm.265786 NM_152803 ENSMUSG00000035273 Hpse HSE1|Hpa|Hpr1 - 5|5 E4 heparanase protein-coding 61048 D9Mit223 - - 9 10.25 cM DNA segment, Chr 9, Massachusetts Institute of Technology 223 unknown 105244654 XR_868013 Gm40226 - - 4 C7|4 predicted gene, 40226 ncRNA 108246 Acta1-rs1 Acta2-rs1 - - actin, alpha 1, skeletal muscle related sequence 1 pseudo 665327 Gm11975 - - 11|11 A1 predicted gene 11975 pseudo 110120545 LOC110120545 - - - VISTA enhancer mm1600 biological-region 105245574 XR_873719 Gm41014 - - 13 C3|13 predicted gene, 41014 ncRNA 102636109 XR_387542 Gm33273 - - 3 A1|3 predicted gene, 33273 ncRNA 111568 Xmv32 Xmv-32 - - xenotropic murine leukemia virus 32 other 230908 Mm.22453 NM_145556 ENSMUSG00000041459 Tardbp 1190002A23Rik|C85084|TDP-43|Tdp43 - 4|4 E2 TAR DNA binding protein protein-coding 62208 D16Mit34 - - 16 10.09 cM DNA segment, Chr 16, Massachusetts Institute of Technology 34 unknown 102634315 XR_373652 Gm31925 - - 1 H2.1|1 predicted gene, 31925 ncRNA 102636515 Gm33558 - - 8|8 predicted gene, 33558 ncRNA 108168291 XR_001781939 Gm46553 - - 16 C3.3|16 predicted gene, 46553 ncRNA 100503397 Gm11714 - - 11|11 70.29 cM predicted gene 11714 ncRNA 100463509 Gm20592 Cct6a-2p - 14 E2.1|14 47.69 cM chaperonin containing Tcp1, subunit 6a (zeta) pseudogene pseudo 100036292 Cinda4 - - 19 38.97 cM cytokine induced activation 4 unknown 105244457 XR_867337 Gm40062 - - 3 E1|3 predicted gene, 40062 ncRNA 102633964 XR_377886 Gm31661 - - 6 D1|6 predicted gene, 31661 ncRNA 77854 XR_880223 E130111B04Rik - - 11|11 D RIKEN cDNA E130111B04 gene ncRNA 104718 Mm.295441 NM_001033213 ENSMUSG00000033530 Ttc7b AA408451|Ttc7l1 - 12|12 E tetratricopeptide repeat domain 7B protein-coding 22666 Mm.29434 NM_009547 ENSMUSG00000049672 Zbtb14 ZF5|Zfp161|b2b1982Clo - 17 E1.3|17 40.42 cM zinc finger and BTB domain containing 14 protein-coding 20840 Mm.1414 NM_016853 ENSMUSG00000032502 Stac - - 9 F3|9 61.81 cM src homology three (SH3) and cysteine rich domain protein-coding 80733 Mm.390864 NM_030558 ENSMUSG00000090236 Car15 AI315043|Ca15|Cals2 - 16 A3|16 11.05 cM carbonic anhydrase 15 protein-coding 62181 D15Mit22 - - 15 15.1 cM DNA segment, Chr 15, Massachusetts Institute of Technology 22 unknown 100417204 Gm18448 - - 1|1 E2.1 crumbs homolog 1 pseudogene pseudo 62779 D16Mit137 - - 16 28.37 cM DNA segment, Chr 16, Massachusetts Institute of Technology 137 unknown 100418310 Gm15953 - - 16|16 B4 ubiquitin-like, containing PHD and RING finger domains, 1 pseudogene pseudo 105245520 XR_873530 Gm40966 - - 13 B1|13 predicted gene, 40966 ncRNA 94245 Mm.352311 NM_025772 ENSMUSG00000057531 Dtnbp1 5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy - 13 A5|13 21.73 cM dystrobrevin binding protein 1 protein-coding 320064 Mm.332820 NR_015486 D130017N08Rik 1700012G11Rik - 5|5 G2 RIKEN cDNA D130017N08 gene ncRNA 70351 Mm.48686 NM_146081 ENSMUSG00000061950 Ppp4r1 3110001J10Rik|Pp4r1 - 17|17 E1.1 protein phosphatase 4, regulatory subunit 1 protein-coding 107980437 L1Md-A102 pORF1|pORF2 - - L1 element, A subfamily, member 102 other 100043585 NM_001101644 Gm4535 - - 7 F5|7 RAN guanine nucleotide release factor pseudogene pseudo 70176 Mm.443418 2210411M09Rik - - 1|1 RIKEN cDNA 2210411M09 gene unknown 258934 Mm.391453 NM_146932 ENSMUSG00000093866 Olfr802 MOR111-1 - 10|10 D3 olfactory receptor 802 protein-coding 100417815 Gm18846 - - 2|2 E5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo 105243998 XR_865707 Gm39693 - - 1 H2.3|1 predicted gene, 39693 ncRNA 85067 D4Mit94 - - 4 15.56 cM DNA segment, Chr 4, Massachusetts Institute of Technology 94 unknown 102638669 XR_380185 Gm35179 - - 10 A3|10 predicted gene, 35179 ncRNA 102467551 n-TLaag8 n-Tl8 - 14 C1|14 nuclear encoded tRNA leucine 8 (anticodon AAG) tRNA 69546 Mm.31598 NM_027115 ENSMUSG00000041775 Mapk1ip1 2310009E07Rik|AU043776|MISS - 7|7 F4 mitogen-activated protein kinase 1 interacting protein 1 protein-coding 100418142 Gm19030 - - 1|1 H3 adaptor-related protein complex 3, sigma 1 subunit pseudogene pseudo 100040775 Gm2961 - - 8|8 B3.1 predicted gene 2961 pseudo 100416536 Gm18155 - - 15|15 D3 ribosomal protein S3A pseudogene pseudo 100036345 Hdlq48 - - - HDL QTL 48 unknown 15270 Mm.245931 NM_010436 ENSMUSG00000049932 H2afx AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax - 9 A5.2|9 24.84 cM H2A histone family, member X protein-coding 56426 Mm.316473 NM_019745 ENSMUSG00000027835 Pdcd10 2410003B13Rik|Ccm3|Tfa15|Tfar15 - 3|3 E3 programmed cell death 10 protein-coding 102636806 Mm.448248 XR_379265 Gm33777 - - 9 A4|9 predicted gene, 33777 ncRNA 100416156 Gm14554 - - X|X A3.3 WD repeat domain 44 pseudogene pseudo 74297 Mm.207320 NM_028859 ENSMUSG00000034031 Ccdc182 1700106J16Rik - 11|11 C coiled-coil domain containing 182 protein-coding 433844 NM_001034888 Gm10482 EG433844 - 5 A1|5 predicted gene 10482 unknown 14390 Mm.18974 NM_008065 ENSMUSG00000008976 Gabpa GABPalpha - 16 C3.3|16 46.92 cM GA repeat binding protein, alpha protein-coding 110042 Qdm - - - H2-Q1 determinant modifier protein-coding 53152 277i15-T7 - - - DNA segment, 277i15-T7 unknown 66449 Mm.354760 NM_025571 ENSMUSG00000014301 Pam16 2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16 - 16 A1|16 2.45 cM presequence translocase-asssociated motor 16 homolog (S. cerevisiae) protein-coding 19192 Mm.288477 NM_011192 ENSMUSG00000078652 Psme3 AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g - 11 D|11 64.67 cM proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) protein-coding 100043949 Gm14520 - - X|X A1.2 predicted gene 14520 pseudo 54451 Mm.356778 NM_018813 ENSMUSG00000054309 Cpsf3 - - 12|12 A1.3 cleavage and polyadenylation specificity factor 3 protein-coding 108169031 XR_001784824 Gm46903 - - 5 B1|5 predicted gene, 46903 ncRNA 674469 Gm14472 - - 2|2 H1 ATP synthase subunit d, mitochondrial-like pseudo 100416942 Gm15576 - - 6|6 D3 high mobility group box 3 pseudogene pseudo 105245809 XR_874788 Gm41199 - - 14 D2|14 predicted gene, 41199 ncRNA 108167883 XM_017314881 Gm46270 - - 11 A1|11 predicted gene, 46270 protein-coding 52902 Mm.439841 D10Bwg1070e 5730421K10Rik - 10|10 DNA segment, Chr 10, Brigham & Women's Genetics 1070 expressed protein-coding 61787 D3Mit234 - - 3 79.42 cM DNA segment, Chr 3, Massachusetts Institute of Technology 234 unknown 16858 Mm.20973 NM_008496 ENSMUSG00000053522 Lgals7 Galectin-7|Pig1 - 7|7 B1 lectin, galactose binding, soluble 7 protein-coding 102631587 XR_381173 Gm29887 - - 11 A4|11 predicted gene, 29887 ncRNA 100416146 Gm17940 - - 14|14 B SET translocation pseudogene pseudo 332942 Mm.387701 NM_001034872 ENSMUSG00000023120 Gm853 - - 4|4 D2.2 predicted gene 853 protein-coding 102632445 Gm30516 - - 3|3 predicted gene, 30516 ncRNA 217682 Mm.154541 NM_001177503 ENSMUSG00000066438 Plekhd1 3830431G21Rik - 12|12 C3 pleckstrin homology domain containing, family D (with coiled-coil domains) member 1 protein-coding 100035952 Lmr16 - - 2 87.22 cM leishmaniasis resistance 16 unknown 100416773 Gm18242 - - 12|12 C1 zinc finger protein 871 pseudogene pseudo 320701 Mm.131700 NM_177233 ENSMUSG00000046500 Fam19a4 C130034I18Rik|Fam19a4 Tafa-4|Tafa-4 - 6|6 D3 family with sequence similarity 19, member A4 protein-coding 108168436 Gm46672 - - X A3.2|X predicted gene, 46672 pseudo 53038 Cprime - - - DNA segment, Cprime unknown 22639 Mm.490597 NM_009540 ENSMUSG00000049576 Zfa-ps Zfa|Zfx - 10 B3|10 26.71 cM zinc finger protein, autosomal, pseudogene pseudo 100504118 Gm20072 - - 5|5 36.08 cM 60S ribosomal protein L37-like pseudo 676157 Gm9665 - - 17|17 E5 ribosomal protein L3 pseudogene pseudo 72940 Mm.4081 2900022M12Rik - - 16|16 RIKEN cDNA 2900022M12 gene protein-coding 83672 Mm.442201 NM_031395 ENSMUSG00000041831 Sytl3 A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307 - 17|17 A1 synaptotagmin-like 3 protein-coding 100041028 Gm3104 - - 7|7 A1 predicted gene 3104 pseudo 93790 Mm.37249 NM_023647 ENSMUSG00000030452 Nipa2 2600017P10Rik|3830408P04Rik|AB041581 - 7|7 B5 non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human) protein-coding 207686 Mm.319007 NM_172447 ENSMUSG00000040473 Cfap69 4921525K03|A330021E22Rik|AI427898 - 5|5 A1 cilia and flagella associated protein 69 protein-coding 17149 Mm.808 NM_001282737 ENSMUSG00000028609 Magoh Mago-m|Mos2 - 4 C7|4 50.18 cM mago homolog, exon junction complex core component protein-coding 68760 Mm.35789 NM_175132 ENSMUSG00000039376 Synpo2l 1110054M18Rik|Chap - 14|14 A3 synaptopodin 2-like protein-coding 102633116 Gm31023 - - 11 A3.3|11 predicted gene, 31023 pseudo 52625 D16Ertd534e - - 16 45.36 cM DNA segment, Chr 16, ERATO Doi 534, expressed unknown 213350 Mm.290953 NM_172116 ENSMUSG00000051007 Gatd1 BC023835|D230016J19Rik|Pddc1 - 7|7 F5 glutamine amidotransferase like class 1 domain containing 1 protein-coding 114146 Szs8 - - - seizure susceptibility 8 unknown 107462 Aia2 Aia-2 - - autoimmune hemolytic anemia 2 protein-coding 109286565 Crest1 - - - Isl1 enhancer E1 biological-region 259058 Mm.377814 NM_147056 ENSMUSG00000073931 Olfr646 MOR33-2 - 7|7 E3 olfactory receptor 646 protein-coding 442812 B930049P21Rik - - - RIKEN cDNA B930049P21 gene protein-coding 434864 Mm.484933 NM_001081648 ENSMUSG00000072930 Gm15107 Ott-like - X F2|X predicted gene 15107 protein-coding 231134 Mm.205483 NM_172708 ENSMUSG00000044716 Dok7 A930013K19Rik|AW049091|Dok-7|EF-12|Oit5 - 5|5 B2 docking protein 7 protein-coding 27059 Mm.2454 NM_012059 ENSMUSG00000028082 Sh3d19 AW011754|Kryn - 3|3 F1 SH3 domain protein D19 protein-coding 668915 Gm14082 - - 2|2 G1 ribosomal protein L7A pseudogene pseudo 259023 Mm.377794 NM_147021 ENSMUSG00000075189 Olfr1055 MOR186-1 - 2|2 D olfactory receptor 1055 protein-coding 11851 Rhoay-ps3 Arhay-ps3|RhoAy3 - Y|Y A1 ras homolog A translocated to the Y, pseudogene 3 pseudo 50915 Mm.214554 NM_016719 ENSMUSG00000026888 Grb14 AI505286 - 2|2 C1.3 growth factor receptor bound protein 14 protein-coding 102640213 XR_380313 Gm36335 - - 10 B3|10 predicted gene, 36335 ncRNA 18763 Mm.30435 NM_013630 ENSMUSG00000032855 Pkd1 PC1|mFLJ00285 - 17 A3.3|17 12.4 cM polycystin 1, transient receptor poteintial channel interacting protein-coding 114342 Adip2 - - - adiposity 2 unknown 104139 H53 H(js) - - histocompatibility 53 protein-coding 58544 D13Die43 - - 13 53.23 cM DNA segment, Chr 13, Dietrich 43 unknown 258560 Mm.377569 NM_146567 ENSMUSG00000048391 Olfr843 MOR155-2 - 9|9 A2 olfactory receptor 843 protein-coding 102631541 Gm29853 - - 8|8 predicted gene, 29853 ncRNA 237010 Mm.132583 NM_172781 ENSMUSG00000025597 Klhl4 B130014A11|C130018J01Rik - X|X E1 kelch-like 4 protein-coding 16214 In(1)12Rk-d In(1)12Rk|In12Rk - - inversion, Chr 1, Roderick 12, distal other 102636491 XR_380705 ENSMUSG00000110353 Gm33543 Gm45531 - 10 C2|10 predicted gene, 33543 ncRNA 668557 Gm12441 - - 3|3 F2.2 predicted gene 12441 pseudo 78643 Mm.391952 1700129O19Rik - - 13|13 RIKEN cDNA 1700129O19 gene protein-coding 52936 2E - - - DNA segment, 2E unknown 61398 D5Mit151 - - 5 36.8 cM DNA segment, Chr 5, Massachusetts Institute of Technology 151 unknown 73551 Mm.250837 1700101O05Rik - - 12|12 RIKEN cDNA 1700101O05 gene protein-coding 100316751 NR_035429 ENSMUSG00000080687 Mir1197 Mirn1197|mir-1197|mmu-mir-1197 - 12 F1|12 60.56 cM microRNA 1197 ncRNA 620882 XR_001784316 Mup-ps2 Gm12545 - 4|4 B3 major urinary protein, pseudogene 2 ncRNA 244114 Mm.469907 NM_001105185 ENSMUSG00000051877 Vmn2r72 EG244114|Vmn2r72-ps - 7|7 D3 vomeronasal 2, receptor 72 protein-coding 192106 Stheal9 Sth9|Sth9a - - soft tissue heal 9 unknown 100526536 NR_037255 ENSMUSG00000106027 Mir669a-7 mmu-mir-669a-7 - 2 A1|2 8.22 cM microRNA 669a-7 ncRNA 228715 Mm.27391 NM_001033297 ENSMUSG00000074754 Smim26 Gm561 - 2|2 G1 small integral membrane protein 26 protein-coding 66475 Mm.306302 NM_024175 ENSMUSG00000049517 Rps23 2410044J15Rik - 13|13 C3 ribosomal protein S23 protein-coding 75946 Mm.415059 NR_040612 ENSMUSG00000086954 4930583P06Rik - - 2|2 F1 RIKEN cDNA 4930583P06 gene ncRNA 627805 Mm.469853 NM_001104570 ENSMUSG00000091805 Vmn2r108 EG627805 - 17|17 A3.2 vomeronasal 2, receptor 108 protein-coding 100862415 XM_003688744 LOC100862415 - - - zinc finger and SCAN domain containing protein 4F-like protein-coding 100124467 NR_030576 ENSMUSG00000076372 Mir568 Mirn568|mmu-mir-568 - 16 B4|16 microRNA 568 ncRNA 73967 4930451A11Rik - - 2|2 RIKEN cDNA 4930451A11 gene protein-coding 102638105 Gm29268 - - Y|Y predicted gene 29268 ncRNA 61084 D4Mit293 - - 4 8.73 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 293 unknown 546361 Gm5942 EG546361 - X|X E1 predicted gene 5942 pseudo 70973 Mm.441564 NR_045183 ENSMUSG00000108354 4931431B13Rik 1700108I23Rik|AA536668 - 7|7 F3 RIKEN cDNA 4931431B13 gene ncRNA 627280 Mm.372763 NM_001039146 ENSMUSG00000100586 Vmn1r90 B430211C08Rik - 7|7 A1 vomeronasal 1 receptor 90 protein-coding 100043538 Gm16520 - - 3|3 F2.2 predicted gene, 16520 protein-coding 100503753 Gm19873 - - 5 E3|5 48.46 cM PRELI domain-containing protein 1, mitochondrial-like pseudo 319210 Mm.246646 NM_175670 ENSMUSG00000097538 Vmn2r-ps11 4930518C23Rik - 3|3 E1 vomeronasal 2, receptor, pseudogene 11 pseudo 74140 Mm.132857 NM_028780 ENSMUSG00000002320 Tm9sf1 1200014D02Rik|AI893436|MP70 - 14|14 C3 transmembrane 9 superfamily member 1 protein-coding 12653 Mm.255241 NM_007694 ENSMUSG00000027350 Chgb Scg-1|cgB|sgI - 2 F2|2 64.74 cM chromogranin B protein-coding 359988 DXMgc126 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 126 unknown 102642641 Mm.404444 LOC102642641 - - - uncharacterized LOC102642641 ncRNA 666503 Gm8139 EG666503 - 15|15 A1 UDP glycosyltransferases 3 family pseudogene pseudo 404739 Iglj2 Igl-J2 - 16|16 A3 immunoglobulin lambda joining 2 other 66102 Mm.425692 NM_023158 ENSMUSG00000018920 Cxcl16 0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo - 11|11 B3 chemokine (C-X-C motif) ligand 16 protein-coding 404572 AL117946 - - - expressed sequence AL117946 unknown 102639102 Mm.463245 NR_155419 ENSMUSG00000115803 Gm35496 - - 15 A2|15 predicted gene, 35496 ncRNA 319740 Mm.287359 NM_177319 ENSMUSG00000018820 Zfyve27 2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681 - 19|19 C3 zinc finger, FYVE domain containing 27 protein-coding 100039946 Mm.418046 XR_882052 ENSMUSG00000108695 Gm2511 - - 7 B3|7 predicted gene 2511 protein-coding 102465555 NR_105886 ENSMUSG00000098547 Mir6921 Gm27352|mmu-mir-6921 - 11|11 B2 microRNA 6921 ncRNA 100312569 Vmn1r-ps143 - - 17 A3.2|17 vomeronasal 1 receptor, pseudogene 143 pseudo 668212 Mm.210266 NM_001082483 ENSMUSG00000020658 Efr3b AI852640|C030014M07Rik|mKIAA0953 - 12|12 A1.1 EFR3 homolog B protein-coding 100502727 Gm19340 - - 12 A1.3|12 9.0 cM NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5-like pseudo 105245853 XR_874945 Gm41242 - - 14 E3|14 predicted gene, 41242 ncRNA 100502710 XM_011244434 Gm19334 - - 13 A5|13 25.41 cM zinc finger protein 484-like pseudo 258685 Mm.377639 NM_146690 ENSMUSG00000095189 Olfr1472 MOR202-16 - 19|19 A olfactory receptor 1472 protein-coding 17536 Mm.247566 NM_010825 ENSMUSG00000027210 Meis2 A430109D20Rik|Mrg1|Stra10 - 2 E4-E5|2 58.28 cM Meis homeobox 2 protein-coding 62731 D18Mit193 - - 18 21.03 cM DNA segment, Chr 18, Massachusetts Institute of Technology 193 unknown 100503332 XR_386758 Gm19639 - - 19 C3|19 38.75 cM predicted gene, 19639 ncRNA 233147 Mm.148946 NM_001243021 ENSMUSG00000030424 Zfp939 9430025M13Rik - 7|7 B3 zinc finger protein 939 protein-coding 231296 Mm.168948 NM_153568 ENSMUSG00000067206 Lrrc66 - - 5|5 C3.3 leucine rich repeat containing 66 protein-coding 74887 4930456J16Rik - - 7|7 RIKEN cDNA 4930456J16 gene protein-coding 109245 Mm.216027 NM_027321 ENSMUSG00000027961 Lrrc39 2010005E21Rik|9430028I06Rik|Myomasp - 3|3 G1 leucine rich repeat containing 39 protein-coding 61643 D8Mit228 - - 8 24.66 cM DNA segment, Chr 8, Massachusetts Institute of Technology 228 unknown 102466644 NR_105826 ENSMUSG00000098929 Mir6400 Gm27425|mmu-mir-6400 - 4|4 A2 microRNA 6400 ncRNA 246730 Mm.14301 NM_145211 ENSMUSG00000052776 Oas1a L3 - 5 F|5 60.65 cM 2'-5' oligoadenylate synthetase 1A protein-coding 100038501 Gm10383 - - - predicted gene 10383 protein-coding 114339 Wta2 - - 6 73.86 cM weight adult 2 unknown 102635334 XR_387297 ENSMUSG00000086161 Gm15389 - - 1 E2.1|1 50.34 cM predicted gene 15389 ncRNA 16931 lop2 lop-2 - - lens opacity 2 unknown 381318 Mm.32504 NM_198654 ENSMUSG00000062510 Nsl1 4833432M17Rik|AI451597|Gm105|Gm984 - 1|1 H6 NSL1, MIS12 kinetochore complex component protein-coding 77113 Mm.350347 NM_178633 ENSMUSG00000031605 Klhl2 6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav - 8|8 B3.1 kelch-like 2, Mayven protein-coding 664894 XR_104891 ENSMUSG00000081394 Gm13215 - - 4|4 D2.3 predicted gene 13215 unknown 100043256 Gm9847 - - 12|12 A1.1 suppressor of cytokine signaling 2 pseudogene pseudo 111397 Emv26 C58v-1|Emv-26 - - endogenous ecotropic MuLV 26 other 103980 Alph2 Aph-2|Aph2 - - alphaprotein 2 protein-coding 16147 Mm.439736 NM_010544 ENSMUSG00000006538 Ihh HHG-2 - 1 C4|1 38.55 cM Indian hedgehog protein-coding 666266 Mm.32442 NR_131152 ENSMUSG00000106357 Gm8013 EG666266 - 5|5 E3 predicted gene 8013 ncRNA 111448 Mtv36 Mtv-36 - - mammary tumor virus locus 36 other 11983 Mm.2171 NM_007512 ENSMUSG00000054428 Atpif1 Atpi|IF(1)|If1 - 4|4 D2.3 ATPase inhibitory factor 1 protein-coding 100035344 Lbn7 LBN8.1 - 8 23.05 cM long bones 7 unknown 227933 Mm.330234 NM_177650 ENSMUSG00000036641 Ccdc148 5830402J09|Gm38473 - 2|2 C1.1 coiled-coil domain containing 148 protein-coding 111490 Xmmv36 Env-36|Xmmv-36 - - xenotropic-MCF leukemia virus 36 other 100038808 Ignpq2 - - - IgA nephropathy QTL 2 unknown 100035946 Rbcq2 - - 4 70.47 cM red blood cell QTL 2 unknown 218441 Mm.259585 NM_173392 ENSMUSG00000021706 Zfyve16 AI035632|B130024H06Rik|B130031L15|mKIAA0305 - 13|13 C3 zinc finger, FYVE domain containing 16 protein-coding 105245439 XR_001780666 LOC105245439 - - 12 E centromere protein W pseudogene pseudo 105244715 XR_868327 Gm40273 - - 5 B1|5 predicted gene, 40273 ncRNA 14377 Mm.18064 NM_008061 ENSMUSG00000078650 G6pc AW107337|G6Pase|G6pt|Glc-6-Pase - 11|11 D glucose-6-phosphatase, catalytic protein-coding 105245347 Gm40819 - - 11|11 predicted gene, 40819 ncRNA 100861502 NR_046155 ENSMUSG00000095350 Gm23284 Rn5s31 - 8 E1|8 predicted gene, 23284 rRNA 667908 Igkv3-12-1 EG667908|Gm8875 - 6|6 C1 immunoglobulin kappa chain variable 3-12-1 pseudo 110609 H2-T16 H-2T16 - - histocompatibility 2, T region locus 16 protein-coding 383862 Gm5276 EG383862 - 3|3 D aldolase A, fructose-bisphosphate pseudogene pseudo 102633377 Gm21849 - - Y|Y predicted gene, 21849 protein-coding 100036065 Elsgp2 - - - elevated serum gp70 2 unknown 547156 Gm14485 Ppia-psx_105.1 - X|X A1.1 peptidylprolyl isomerase A pseudogene x_105.1 pseudo 105244966 XR_870300 Gm40484 - - 8 A3|8 predicted gene, 40484 ncRNA 195726 XM_003945613 Scml1 Gm1792|Gm47 - X|X F4 Scm polycomb group protein like 1 protein-coding 213760 Mm.259035 NM_145984 ENSMUSG00000024127 Prepl 2810457N15Rik|9530014L06Rik|D030028O16Rik|mKIAA0436 - 17|17 E4 prolyl endopeptidase-like protein-coding 777662 Ighd3-2 Gm16783 - 12|12 F1 immunoglobulin heavy diversity 3-2 other 668422 Gm9162 EG668422 - 7 B1|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 233824 Mm.442015 NM_001033318 ENSMUSG00000034951 Cog7 5630400E24Rik|Gm167 - 7|7 F2 component of oligomeric golgi complex 7 protein-coding 171235 Mm.432089 NM_134201 ENSMUSG00000054142 Vmn1r236 V1rf4 - 17|17 A3.2 vomeronasal 1 receptor 236 protein-coding 100418276 Gm19113 - - 9|9 A4 squamous cell carcinoma antigen recognized by T-cells 3 pseudogene pseudo 70209 Mm.163766 NM_144801 ENSMUSG00000002781 Tmem143 2310076O21Rik|AI481604 - 7|7 B3 transmembrane protein 143 protein-coding 100416142 Gm17938 - - 13|13 B3 tubulin, alpha 1B pseudogene pseudo 71847 Mm.379203 NM_027955 ENSMUSG00000094309 Btbd35f1 1700017G21Rik|Gclh|Gmcl1l|Gmcl2 - X|X A3.1 BTB domain containing 35, family member 1 protein-coding 102467616 n-TYgta10 n-Ty10 - 14 C1|14 nuclear encoded tRNA tyrosine 10 (anticodon GTA) tRNA 380882 Mm.425809 NM_001033438 ENSMUSG00000095300 Gm906 - - 13|13 A5 predicted gene 906 protein-coding 26383 Mm.4375 NM_011936 ENSMUSG00000055932 Fto AW743446|mKIAA1752 - 8 C4-C5|8 44.34 cM fat mass and obesity associated protein-coding 107867 Tel12q1 - - - telomeric repeat sequence, Chr 12, q arm 1 protein-coding 100417133 Gm18415 - - 17|17 A3.3 vomeronasal 2, receptor 121 pseudogene pseudo 407810 Mm.249337 NR_131060 ENSMUSG00000086662 BC046251 - - 7 C|7 cDNA sequence BC046251 ncRNA 74603 Mm.297337 NM_027578 ENSMUSG00000036172 Cd200r3 4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb - 16|16 B5 CD200 receptor 3 protein-coding 114251 Many1 QTL-CS10.1 - - mandible asymmetry 1 unknown 71122 Mm.437539 NR_045831 4933408N05Rik - - 8|8 E1 RIKEN cDNA 4933408N05 gene ncRNA 627412 Gm14373 - - X A1.1|X La ribonucleoprotein domain family, member 4 pseudogene pseudo 61106 D2Mit469 - - 2 33.65 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 469 unknown 102632286 XR_381372 Gm30401 - - 12 A2|12 predicted gene, 30401 ncRNA 210622 Mm.28649 NM_173749 ENSMUSG00000027188 Pamr1 5930437L24|E430002G05Rik|Ramp - 2|2 E2 peptidase domain containing associated with muscle regeneration 1 protein-coding 108167464 XR_001778308 4930570E01Rik - - 7|7 F4 RIKEN cDNA 4930570E01 gene ncRNA 239273 Mm.40537 NM_001033336 ENSMUSG00000032849 Abcc4 ABCC4-N1|D630049P08Rik|MOATB|MRP4 - 14|14 E4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 105246641 Gm41900 - - X|X predicted gene, 41900 ncRNA 102637391 Scgb2b32-ps Abpbg32-ps - 7|7 secretoglobin, family 2B, member 32, pseudogene pseudo 19134 Mm.10027 NM_013830 ENSMUSG00000021413 Prpf4b 2610037H07|Prp4|Prp4k|Prpk|cbp143 - 13|13 A3.3 pre-mRNA processing factor 4B protein-coding 108660407 LOC108660407 - - - ring finger protein 181 pseudogene pseudo 102632009 XR_386295 Gm30190 - - 18 E1|18 predicted gene, 30190 ncRNA 15504 Mm.439983 NM_008299 ENSMUSG00000081984 Dnajb3 Hsj3|MSJ-1|Msj1 - 1|1 D DnaJ heat shock protein family (Hsp40) member B3 protein-coding 67591 Mm.55982 NM_026261 ENSMUSG00000055891 Ubl4b 4930522D07Rik - 3|3 F2.3 ubiquitin-like 4B protein-coding 112263 Orch6 - - 8 36.67 cM autoimmune orchitis resistance 6 unknown 667752 Gm8793 EG667752 - 10|10 A4 3-phosphoglycerate dehydrogenase pseudogene pseudo 102639799 XR_875678 Gm36026 - - 15 F2|15 predicted gene, 36026 ncRNA 62990 D19Mit111 - - 19 15.82 cM DNA Segment, Chr 19, Massachusetts Institute of Technology 111 unknown 258515 Mm.377546 NM_146522 ENSMUSG00000095667 Olfr854 MOR147-3 - 9|9 A3 olfactory receptor 854 protein-coding 112367 Sle1 - - 1 76.73 cM systemic lupus erythmatosus susceptibility 1 unknown 105244811 XR_868814 Gm40356 - - 6 A2|6 predicted gene, 40356 ncRNA 108169166 Gm44184 - - 6 F1|6 thymosin beta-10 pseudogene pseudo 108167891 Gm12094 - - 11 A3.3|11 16.99 cM 60S ribosomal protein L23a pseudogene pseudo 74279 Mm.159154 NM_028851 ENSMUSG00000031118 1700080O16Rik - - X|X A5 RIKEN cDNA 1700080O16 gene protein-coding 109384 Bwq3 - - 8 61.66 cM body weight, QTL 3 unknown 102639156 XR_376052 Gm35535 - - 3 G2|3 predicted gene, 35535 ncRNA 102633266 NR_154549 Gm9748 - - 14|14 D3 predicted gene 9748 ncRNA 103647 AI225885 - - - expressed sequence AI225885 unknown 62560 D12Mit116 - - 12 36.46 cM DNA segment, Chr 12, Massachusetts Institute of Technology 116 unknown 76650 Mm.218639 NM_029688 ENSMUSG00000032802 Srxn1 1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01 - 2|2 G3 sulfiredoxin 1 homolog (S. cerevisiae) protein-coding 21524 Tcra-V2 - - - T cell receptor alpha, variable 2 other 53165 277i15-SP6 - - - DNA segment, 277i15-SP6 unknown 17224 Mm.201549 NM_008570 ENSMUSG00000022227 Mcpt1 AV080368|Mcp-1 - 14 C3|14 28.19 cM mast cell protease 1 protein-coding 320482 Mm.442057 NR_045729 ENSMUSG00000086484 Nron A630071L07Rik|Gm24353 - 2|2 B non-protein coding RNA, repressor of NFAT ncRNA 102640206 XR_001781707 Gm36329 - - 15 E1|15 predicted gene, 36329 ncRNA 109280008 LOC109280008 Mm102 - - VISTA enhancer mm102 biological-region 74551 Mm.29856 NM_028994 ENSMUSG00000040618 Pck2 1810010O14Rik|9130022B02Rik|PEPCK-M - 14 C3|14 28.19 cM phosphoenolpyruvate carboxykinase 2 (mitochondrial) protein-coding 68238 Mm.434605 NR_045799 ENSMUSG00000101481 1700123O21Rik - - 16 A1|16 2.71 cM RIKEN cDNA 1700123O21 gene ncRNA 60698 D1Mit58 - - 1 2.08 cM DNA segment, Chr 1, Massachusetts Institute of Technology 58 unknown 100503620 Mm.400984 XR_386176 Gm15337 - - 18 B3|18 21.09 cM predicted gene 15337 unknown 235441 Mm.32465 NM_144937 ENSMUSG00000032376 Usp3 AA409661|BC017156 - 9|9 C ubiquitin specific peptidase 3 protein-coding 620782 Gm6181 EG620782 - 7|7 B4 mitochondrial ribosomal protein S21 pseudogene pseudo 111622 Tcra-V14 Valpha14 - - T cell receptor alpha, variable 14 other 246710 Mm.102367 NM_153514 ENSMUSG00000022075 Rhobtb2 Dbc2|E130206H14Rik|mKIAA0717 - 14|14 D2 Rho-related BTB domain containing 2 protein-coding 17195 Mm.30045 NM_010776 ENSMUSG00000024863 Mbl2 L-MBP|MBL|MBL-C|MBP-C - 19 C1|19 25.14 cM mannose-binding lectin (protein C) 2 protein-coding 640020 Muc3b - - 5|5 mucin 3B, cell surface associated protein-coding 16775 Mm.258065 NM_010681 ENSMUSG00000019846 Lama4 - - 10 B1|10 20.02 cM laminin, alpha 4 protein-coding 100417748 Gm18803 - - 10|10 D3 RNA polymerase II associated protein 3 pseudogene pseudo 100534288 LOC100534288 - - 2|2 H4 zinc finger protein 937 pseudogene pseudo 102633956 XR_391640 Gm31653 - - 7 D2|7 predicted gene, 31653 ncRNA 100036466 Azdm4 - - - Alzheimer's disease modifier 4 unknown 73647 Mm.6209 NM_023709 ENSMUSG00000031981 Capn9 2200003B16Rik|GC36|nCL-4|nCL4 - 8|8 E2 calpain 9 protein-coding 17542 Ms10b MMS10-B - - minisatellite 10b detected by probe MMS10 other 109836 H33 H-33 - - histocompatibility 33 protein-coding 100039774 Gm11405 - - 4|4 C3 zinc finger protein 384 pseudogene pseudo 667565 Gm8706 EG667565 - 5|5 A1 Crn, crooked neck-like 1 pseudogene pseudo 116522 Obq9 - - 1 74.68 cM obesity QTL 9 unknown 112362 Nidd4 - - 11 79.52 cM non-insulin-dependent diabetes mellitus 4 unknown 110295 Bis1 - - 4 69.44 cM beta-carboline-induced seizures 1 unknown 100043272 Mm.398072 NM_001301269 ENSMUSG00000074918 Inafm2 5430417L22Rik - 2|2 E5 InaF motif containing 2 protein-coding 72288 2210402C17Rik - - 11|11 RIKEN cDNA 2210402C17 gene protein-coding 66971 Mm.289427 NM_025876 ENSMUSG00000027487 Cdk5rap1 2310066P17Rik - 2|2 H1 CDK5 regulatory subunit associated protein 1 protein-coding 100417454 Gm46992 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 72432 Mm.35369 NM_001081180 ENSMUSG00000055561 Spink5 2310065D10Rik|AV238912|LEKT1|LETK1|VAKT1 - 18 B3|18 23.74 cM serine peptidase inhibitor, Kazal type 5 protein-coding 116917 D13Jde4 - - - DNA segment, Chr 13, Jan Deussing 4 unknown 100503584 Mm.276881 NM_001127188 ENSMUSG00000062518 Zfp534 Gm13159 - 4|4 E1 zinc finger protein 534 protein-coding 66356 Mm.482278 NM_023197 ENSMUSG00000030980 Knop1 2310008H09Rik|Tsg118 - 7|7 F2 lysine rich nucleolar protein 1 protein-coding 15406 Hoxb Hox-2 - - homeobox B cluster other 258462 Mm.377516 NM_146470 ENSMUSG00000101750 Olfr1392 MOR256-25 - 11|11 B1.2 olfactory receptor 1392 protein-coding 108167997 XR_001780599 Gm46347 - - 12 A3|12 predicted gene, 46347 ncRNA 102635725 XR_387697 Gm32988 - - 5 F|5 predicted gene, 32988 ncRNA 625603 Mm.37987 NR_033622 Gm6607 EG625603 - 9 A3|9 40S ribosomal protein S20 pseudogene pseudo 28261 D10Jhu54 - - - DNA segment, Chr 10, Johns Hopkins University 54 unknown 432457 Mm.446450 9830137J09Rik - - 10|10 B2 Riken cDNA 9830137J09 gene unknown 387346 Mm.377908 NM_207019 ENSMUSG00000063478 Tas2r114 T2R14|Tas2r14|mGR14|mt2r46 - 6|6 F3 taste receptor, type 2, member 114 protein-coding 52234 Mm.394026 D7Ertd183e - - 7 63.44 cM DNA segment, Chr 7, ERATO Doi 183, expressed unknown 70708 3830422I06Rik - - 3|3 RIKEN cDNA 3830422I06 gene protein-coding 56643 Mm.155618 NM_053079 ENSMUSG00000025557 Slc15a1 D630032F02|PECT1|PEPT1 - 14|14 E5 solute carrier family 15 (oligopeptide transporter), member 1 protein-coding 19472 Rb(11.13)6Lub Rb6Lub - - Robertsonian translocation, Chr 11 and 13, Lubeck 6 other 105246373 Mm.405579 Gm41669 - - 18|18 predicted gene, 41669 ncRNA 110497 Tcra-V1.9 - - - T cell receptor alpha, variable 1.9 other 12626 Mm.12481 NM_007684 ENSMUSG00000021537 Cetn3 MmCEN3 - 13|13 C3 centrin 3 protein-coding 751558 NR_030467 ENSMUSG00000076147 Mir694 Mirn694|mir-694|mmu-mir-694 - 18 E1|18 microRNA 694 ncRNA 102633971 XR_373747 Gm31668 - - 1 H4|1 predicted gene, 31668 ncRNA 102465711 NR_106091 ENSMUSG00000106154 Mir7232 mmu-mir-7232 - 6|6 C3 microRNA 7232 ncRNA 53895 Mm.287892 NM_017393 ENSMUSG00000002660 Clpp AU019820|D17Wsu160e - 17 D|17 29.61 cM caseinolytic mitochondrial matrix peptidase proteolytic subunit protein-coding 75167 Mm.423019 4930527F18Rik - - 4|17 RIKEN cDNA 4930527F18 gene protein-coding 100040250 Gm13193 - - 2|2 A1 predicted gene 13193 pseudo 208606 Mm.276341 NM_025438 ENSMUSG00000029422 Rsrc2 1500011J06Rik - 5|5 F arginine/serine-rich coiled-coil 2 protein-coding 100504637 Mm.440928 NR_045068 ENSMUSG00000100199 Gm20324 - - 15 E1|15 38.76 cM predicted gene, 20324 ncRNA 100417498 Gm18648 - - 17|17 C coiled-coil domain containing 77 pseudogene pseudo 71768 Mm.169261 NM_027913 ENSMUSG00000043789 Vwce 1300015B04Rik - 19|19 A von Willebrand factor C and EGF domains protein-coding 102637558 XR_384081 Gm34336 - - 15 B3.3|15 predicted gene, 34336 ncRNA 27061 Mm.17 NM_012060 ENSMUSG00000002015 Bcap31 Bap31 - X|X A7.3 B cell receptor associated protein 31 protein-coding 62509 D10Mit179 - - 10 65.36 cM DNA segment, Chr 10, Massachusetts Institute of Technology 179 unknown 619974 Igkv5-40-1 fp23r - 6|6 C1 immunoglobulin kappa chain variable 5-40-1 pseudo 100418098 Gm18998 - - 9|9 F1 NSA2 ribosome biogenesis homolog pseudogene pseudo 110502 Tcra-V1.4 - - - T cell receptor alpha, variable 1.4 other 102634413 Gm29218 - - Y|Y predicted gene 29218 ncRNA 105243569 XR_871366 ENSMUSG00000110760 Gm39456 - - 9 F4|9 predicted gene, 39456 ncRNA 27478 42S - - - DNA segment, 42S unknown 105244005 Gm39700 - - 1|1 predicted gene, 39700 ncRNA 105243574 XR_871374 ENSMUSG00000111528 Gm39460 - - 9 F4|9 predicted gene, 39460 ncRNA 109728 Hst4 Hst-4 - - hybrid sterility 4 protein-coding 62341 D19Mit84 - - 19 51.74 cM DNA segment, Chr 19, Massachusetts Institute of Technology 84 unknown 97389 C80893 - - - expressed sequence C80893 unknown 666379 Gm12445 - - 4|4 B1 predicted gene 12445 pseudo 18074 Mm.20348 NM_008695 ENSMUSG00000021806 Nid2 AW547149|Ly111|NID-2|entactin-2|nidogen-2 - 14|14 A3 nidogen 2 protein-coding 402732 Mm.131709 A030012G06Rik - - 9|9 RIKEN cDNA A030012G06 gene protein-coding 53878 Mm.99395 NM_017390 ENSMUSG00000040132 Svs2 BB115391|Semg1|SvsII - 2 H3|2 84.82 cM seminal vesicle secretory protein 2 protein-coding 67968 Mm.26883 NM_026480 ENSMUSG00000032346 Ooep 2410146L05Rik|Floped|Moep19|Sddr - 9|9 E1 oocyte expressed protein protein-coding 100504305 Gm16534 - - 2|2 22.0 cM predicted gene 16534 ncRNA 102634909 XR_383773 Gm32382 - - 14 E4|14 predicted gene, 32382 ncRNA 61260 D2Mit152 - - 2 21.81 cM DNA segment, Chr 2, Massachusetts Institute of Technology 152 unknown 102632540 XR_385064 Gm30588 - - 16 C4|16 predicted gene, 30588 ncRNA 108168096 XM_017315682 Gm46425 - - 13 B3|13 predicted gene, 46425 protein-coding 102467407 n-TVcac10 n-Tv18 - 3 F2.1|3 nuclear encoded tRNA valine 10 (anticodon CAC) tRNA 102636547 XR_874886 Gm33583 - - 14 E2.1|14 predicted gene, 33583 ncRNA 102638120 Mm.308783 Gm34758 - - 14|14 predicted gene, 34758 protein-coding 628304 XM_001002281 Gm6866 EG628304 - 7|7 B3 predicted gene 6866 protein-coding 93694 Mm.197536 NM_053109 ENSMUSG00000030157 Clec2d Clr-b|Clrb|Ocil - 6|6 F3 C-type lectin domain family 2, member d protein-coding 317750 Mm.330538 NM_175034 ENSMUSG00000035183 Slc24a5 F630045L20Rik|JSX|NCKX5|NCX5|Oca6 - 2|2 F1 solute carrier family 24, member 5 protein-coding 102640151 XR_391261 Gm36286 - - 7 B2|7 predicted gene, 36286 ncRNA 102633470 Gm31287 - - 8|8 predicted gene, 31287 protein-coding 100042444 Mm.304562 Trav6d-6 Gm1220 - 14|14 C2 T cell receptor alpha variable 6D-6 other 56431 Mm.28919 NM_019771 ENSMUSG00000015932 Dstn 2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p - 2 G1|2 70.89 cM destrin protein-coding 105245760 XR_874646 Gm41159 - - 14 C3|14 predicted gene, 41159 ncRNA 102467605 n-TTcgt1 n-Tt10 - - nuclear encoded tRNA threonine 1 (anticodon CGT) tRNA 100416866 Gm18295 - - 3|3 E3 Hspb associated protein 1 pseudogene pseudo 102639677 XR_389220 Gm35932 - - 11 E2|11 predicted gene, 35932 ncRNA 258695 Mm.223130 NM_146700 ENSMUSG00000094755 Olfr1453 MOR202-6 - 19|19 A olfactory receptor 1453 protein-coding 71185 Mm.165401 4933424C08Rik - - 4|4 RIKEN cDNA 4933424C08 gene protein-coding 108168962 XM_017320498 LOC108168962 - - 4 E1 endogenous retrovirus group K member 25 Pol protein-like protein-coding 111844 Iapls3-14 - - - intracisternal A particle, lymphocyte specific 3-14 other 102632550 XR_380930 Gm30595 - - 10 D3|10 predicted gene, 30595 ncRNA 432885 LOC432885 - - 14|14 E2.1 uncharacterized LOC432885 unknown 75886 Mm.268996 NM_029472 ENSMUSG00000009093 Gstt4 4930583C14Rik|AI507011 - 10|10 C1 glutathione S-transferase, theta 4 protein-coding 108169158 XR_001785336 Gm46969 - - 6 D3|6 predicted gene, 46969 ncRNA 75549 Mm.48828 XR_001778779 1700019L22Rik - - 8|8 B1.3 RIKEN cDNA 1700019L22 gene ncRNA 102637869 XR_866911 Gm34571 - - 2 H1|2 predicted gene, 34571 ncRNA 100034769 Tcsz3 QTL-CS14.1 - - tooth central size 3 unknown 668252 Gm9068 EG668252 - 10|10 B2 Wilms' tumour 1-associating protein pseudogene pseudo 259137 Olfr1556-ps1 MOR0-16P - 10|10 D1 olfactory receptor 1556, pseudogene 1 pseudo 100042416 Mm.268349 D830025C05Rik - - 8|8 A2 RIKEN cDNA D830025C05 gene protein-coding 102465546 NR_105871 ENSMUSG00000105468 Mir6906 mmu-mir-6906 - 10|10 B4 microRNA 6906 ncRNA 14537 Mm.244825 NM_010265 ENSMUSG00000038843 Gcnt1 5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT - 19 B|19 12.75 cM glucosaminyl (N-acetyl) transferase 1, core 2 protein-coding 105243159 LOC105243159 - - - uncharacterized LOC105243159 ncRNA 102633403 XR_386096 Gm31237 - - 18 A2|18 predicted gene, 31237 ncRNA 667191 Gm8504 EG667191 - 12|12 D2 poly(rC) binding protein 2 pseudogene pseudo 403344 Mm.354428 C230006B20 - - - uncharacterized LOC403344 unknown 19279 Mm.336316 NM_011217 ENSMUSG00000020151 Ptprr Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213 - 10|10 D2 protein tyrosine phosphatase, receptor type, R protein-coding 102634851 XR_380257 Gm32338 - - 10 B1|10 predicted gene, 32338 ncRNA 382243 Mm.304331 NM_001037716 ENSMUSG00000072923 Gm10439 - - X F3|X predicted gene 10439 protein-coding 62891 D11Mit216 - - 11 19.21 cM DNA segment, Chr 11, Massachusetts Institute of Technology 216 unknown 67119 Mm.154305 NM_025977 ENSMUSG00000006241 Ccdc159 2510048L02Rik - 9|9 A3 coiled-coil domain containing 159 protein-coding 102643073 LOC102643073 - - - uncharacterized LOC102643073 ncRNA 102635873 XM_006534642 Gm33099 - - 11 D|11 predicted gene, 33099 protein-coding 105244063 XM_011238926 Gm39743 - - 1 H6|1 predicted gene, 39743 protein-coding 73936 Mm.475741 NM_028687 ENSMUSG00000021086 Ccdc175 4930403N07Rik - 12|12 C3 coiled-coil domain containing 175 protein-coding 14348 Mm.39101 NM_010243 ENSMUSG00000055373 Fut9 AI746471|AU067636|mFUT9|mFuc-TIX - 4 A3|4 10.59 cM fucosyltransferase 9 protein-coding 100504138 Gm14163 - - 2|2 75.41 cM protein kish-A-like pseudo 102633479 Gm31293 - - 2|2 predicted gene, 31293 ncRNA 105245123 Mm.446930 XR_871529 Gm40617 - - 10 A4|10 predicted gene, 40617 ncRNA 52633 Mm.383203 NM_023175 ENSMUSG00000022751 Nit2 1190017B19Rik|D16Ertd502e - 16 C1.1|16 34.22 cM nitrilase family, member 2 protein-coding 100526513 NR_037298 ENSMUSG00000106465 Mir374c mmu-mir-374c - X D|X 46.22 cM microRNA 374c ncRNA 320546 A130075O10Rik - - 1|1 RIKEN cDNA A130075O10 gene protein-coding 20609 Mm.353282 NM_011425 ENSMUSG00000050824 Sstr5 Smstr5|sst5 - 17 A3.3|17 12.62 cM somatostatin receptor 5 protein-coding 100418151 Gm19037 - - 4|4 A1 ubiquitin protein ligase E3 component n-recognin 5 pseudogene pseudo 100041408 Gm3321 - - 5|5 A1 anaphase-promoting complex subunit 5 pseudogene pseudo 102638330 Mm.126950 Gm14264 - - 2|2 92.07 cM predicted gene 14264 ncRNA 101056225 XM_017320555 Gm29801 - - 4 A5|4 predicted gene, 29801 protein-coding 111476 Gln3-7 - - - GLN retrotransposon family 3-7 other 105246258 XR_876745 Gm41566 - - 17 B1|17 predicted gene, 41566 ncRNA 107338 Mm.271620 NM_178930 ENSMUSG00000025224 Gbf1 1700083E03Rik|AI035702|AW049900|mKIAA0248 - 19|19 C3 golgi-specific brefeldin A-resistance factor 1 protein-coding 328049 C130090J04 - - 11|11 E2 uncharacterized protein C130090J04 protein-coding 666670 Gm8227 EG666670 - 13|13 C1 BCL2-like 13 (apoptosis facilitator) pseudogene pseudo 216618 Mm.128663 NM_025740 ENSMUSG00000020462 Cfap36 2300003H10|4931428D14Rik|Ccdc104 - 11|11 A3.3 cilia and flagella associated protein 36 protein-coding 320165 Mm.308452 NM_177089 ENSMUSG00000065954 Tacc1 4833447E04Rik|AA960202|B230378H13Rik - 8|8 A2 transforming, acidic coiled-coil containing protein 1 protein-coding 108168990 XR_001784520 Gm46878 - - 4 E2|4 predicted gene, 46878 ncRNA 100124476 NR_030574 ENSMUSG00000070110 Mir504 Mirn504|mir-504|mmu-mir-504 - X A6|X microRNA 504 ncRNA 100035116 Obwq4 - - 17 29.73 cM obesity and body weight QTL 4 unknown 18189 Mm.478418 NM_020252 ENSMUSG00000024109 Nrxn1 1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578 - 17|17 E5 neurexin I protein-coding 241636 Mm.83437 NM_177726 ENSMUSG00000027403 Tgm6 TGM3L|TGY - 2|2 F1 transglutaminase 6 protein-coding 105246289 Gm41593 - - 17|17 predicted gene, 41593 ncRNA 214639 Mm.19839 NM_178098 ENSMUSG00000050345 4930486L24Rik AW545031 - 13|13 B2 RIKEN cDNA 4930486L24 gene protein-coding 100418280 Gm19114 - - 3|3 A1 ganglioside-induced differentiation-associated-protein 2 pseudogene pseudo 102636763 Gm33745 - - 15|15 predicted gene, 33745 protein-coding 668351 Gm9120 EG668351 - 7|7 B1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 73728 Mm.268532 NM_028627 ENSMUSG00000037126 Psd 1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011 - 19 C3|19 38.8 cM pleckstrin and Sec7 domain containing protein-coding 100417322 Gm18532 - - 15|15 A2 crumbs homolog 1 pseudogene pseudo 62793 D15Mit184 - - 15 22.82 cM DNA segment, Chr 15, Massachusetts Institute of Technology 184 unknown 100041779 Gm3509 - - 13 A3.3|13 predicted gene 3509 protein-coding 107972 Defa-rs11 CRS4C-4a|Defcr-rs11 - - defensin, alpha, related sequence 11 protein-coding 15042 Mm.439654 NM_008207 ENSMUSG00000053835 H2-T24 H-2T24 - 17 B1|17 18.84 cM histocompatibility 2, T region locus 24 protein-coding 117568 30.MMHAP16FRB12 - - - DNA segment, 30.MMHAP16FRB12 unknown 241075 Mm.239534 NM_175509 ENSMUSG00000051344 Plekhm3 9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l - 1|1 C2 pleckstrin homology domain containing, family M, member 3 protein-coding 105244747 XR_868423 Gm40303 - - 5 C1|5 predicted gene, 40303 ncRNA 53055 CA83.3 - - - DNA segment, CA83.3 unknown 100417205 Gm18449 - - 1|1 F crumbs homolog 1 pseudogene pseudo 404576 AL118485 - - - expressed sequence AL118485 unknown 53134 YE6(II) - - - DNA segment, YE6(II) unknown 625729 Gm11957 EG625729 - 11|11 A1 transformer 2 beta homolog pseudogene pseudo 216565 Mm.491265 NM_153078 ENSMUSG00000042302 Ehbp1 AF424697|Flj21950|NACSIN - 11 A3.2|11 14.1 cM EH domain binding protein 1 protein-coding 76362 2610034O05Rik - - 10|10 RIKEN cDNA 2610034O05 gene protein-coding 23795 Mm.7244 NM_011783 ENSMUSG00000020581 Agr2 Agr2h|Gob-4|HAG-2|XAG-2|mAG-2 - 12|12 A3 anterior gradient 2 protein-coding 54473 Mm.103551 NM_023764 ENSMUSG00000025139 Tollip 4930403G24Rik|4931428G15Rik - 7|7 F5 toll interacting protein protein-coding 432459 LOC432459 - - 8|8 B1.1 uncharacterized LOC432459 unknown 353109 Mm.63867 NR_045685 ENSMUSG00000083896 Scgb2b23-ps 1700028O08Rik|Abpbg23-ps|C2y|Scgb2b1|Scgb2b1-ps - 7|7 B1 secretoglobin, family 2B, member 23, pseudogene pseudo 101179 Mm.443708 6430519N07Rik AI848395|AW554807 - - RIKEN cDNA 6430519N07 gene protein-coding 102639288 Gm35635 - - 4|4 predicted gene, 35635 ncRNA 108168009 XR_001780630 Gm46358 - - 12 C3|12 predicted gene, 46358 ncRNA 100039120 Mm.379326 NM_001162364 ENSMUSG00000071788 Gm14525 - - X|X A2 predicted gene 14525 protein-coding 258725 Mm.377658 NM_146730 ENSMUSG00000075171 Olfr1095 MOR179-1 - 2|2 D olfactory receptor 1095 protein-coding 228770 Mm.159868 NM_001040689 ENSMUSG00000032852 Rspo4 A730099F22|A930029K19Rik - 2|2 G3 R-spondin 4 protein-coding 258426 Mm.377494 NM_146434 ENSMUSG00000075218 Olfr995 MOR203-3 - 2|2 D olfactory receptor 995 protein-coding 70040 Mm.437832 NR_040423 2610037D02Rik AU024679 - 15|15 F1 RIKEN cDNA 2610037D02 gene ncRNA 102638765 Gm35250 - - 11|11 predicted gene, 35250 ncRNA 233058 Mm.297657 NM_172740 ENSMUSG00000058402 Zfp420 B230119D13|B230312I18Rik|mszf59-1|mszf70 - 7|7 B1 zinc finger protein 420 protein-coding 102631680 Gm29957 - - 14|14 predicted gene, 29957 ncRNA 192970 Mm.192213 NM_177564 ENSMUSG00000034449 Dhrs11 - - 11|11 C dehydrogenase/reductase (SDR family) member 11 protein-coding 102639536 XR_383853 Gm35827 - - 15 B1|15 predicted gene, 35827 ncRNA 100503938 Gm19976 - - 11|11 84.06 cM predicted gene, 19976 ncRNA 102634702 XR_383270 Gm32224 - - 14 A3|14 predicted gene, 32224 ncRNA 100862365 Mm.4711 NM_001270513 ENSMUSG00000093918 Gm21677 - - Y A1|Y predicted gene, 21677 protein-coding 102637922 XR_381695 Gm34613 - - 12 C3|12 predicted gene, 34613 ncRNA 100124573 Vmn2r-ps138 - - Y|Y A1 vomeronasal 2, receptor, pseudogene 138 pseudo 12428 Mm.4189 NM_009828 ENSMUSG00000027715 Ccna2 AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca - 3 B|3 17.67 cM cyclin A2 protein-coding 102633440 XR_390948 Gm26763 - - 4 E1|4 predicted gene, 26763 ncRNA 102633981 XR_381066 Gm31674 - - 11 A3.1|11 predicted gene, 31674 ncRNA 102640253 XR_379556 Gm36365 - - 9 C|9 predicted gene, 36365 ncRNA 70716 Mm.322667 6330406O05Rik - - 7|7 RIKEN cDNA 6330406O05 gene protein-coding 278181 XM_006527714 Gm5073 EG278181 - X|X A1.2 predicted pseudogene 5073 protein-coding 621477 Gm6230 EG621477 - 7|7 D3 ribosomal protein S4, X-linked pseudogene pseudo 224661 NM_146076 ENSMUSG00000036196 Slc26a8 - - 17 A3.3|17 14.82 cM solute carrier family 26, member 8 protein-coding 21254 T(7;13)7Ad T7Ad - - reciprocal translocation, Chr 7 and 13, Adler 7 other 62944 D11Mit323 - - 11 52.13 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 323 unknown 100504058 Mm.483844 Gm20038 - - 2|2 11.87 cM predicted gene, 20038 unknown 17869 Mm.2444 NM_010849 ENSMUSG00000022346 Myc AU016757|Myc2|Niard|Nird|bHLHe39 - 15 D1|15 26.19 cM myelocytomatosis oncogene protein-coding 102633038 XR_871449 Gm30959 - - 10 A1|10 predicted gene, 30959 ncRNA 77115 Mm.447147 6030451C04Rik - - 4|4 RIKEN cDNA 6030451C04 gene protein-coding 22152 Mm.40068 NM_023279 ENSMUSG00000062380 Tubb3 3200002H15Rik|M(beta)3|M(beta)6 - 8|8 E1 tubulin, beta 3 class III protein-coding 67315 Mm.46089 NM_026087 ENSMUSG00000030366 Ceacam12 1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3 - 7|7 A2 carcinoembryonic antigen-related cell adhesion molecule 12 protein-coding 666349 Gm13239 - - 4|4 E1 high mobility group box 3 pseudogene pseudo 100503241 Gm13755 - - 2|2 48.74 cM predicted gene 13755 pseudo 102635612 XR_391537 Gm32902 - - 7 C|7 predicted gene, 32902 ncRNA 109871 Tcd4 Tcd-4 - - t-complex distorter 4 protein-coding 100035236 Bmgr2 - - - bone marrow graft rejection 2 unknown 100416783 Gm18249 - - 1|1 E2.1 SCAN domain containing 3 pseudogene pseudo 100042096 Gm3665 - - 7|7 A1 vomeronasal 2, receptor 31 pseudogene pseudo 268977 Mm.269747 NM_019919 ENSMUSG00000001870 Ltbp1 9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo - 17|17 E2 latent transforming growth factor beta binding protein 1 protein-coding 67045 Mm.35117 NM_025934 ENSMUSG00000023852 Riok2 2010110K24Rik|2410085M17Rik - 17|17 A3.1 RIO kinase 2 protein-coding 108673 Mm.294908 NM_023731 ENSMUSG00000024732 Ccdc86 4933411H20Rik|6720480F16Rik|D19Ertd678e - 19 A|19 7.41 cM coiled-coil domain containing 86 protein-coding 100416176 Gm13739 - - 2|2 C2 ribosomal protein S7 pseudogene pseudo 27728 D1Sta1 - - - DNA segment, Chr 1, Philip Stanier 1 unknown 110120493 LOC110120493 - - - VISTA enhancer mm1394 biological-region 100417062 Gm18392 - - 7|7 D3 predicted gene, 18392 pseudo 100035448 Amdt1 - - - amphetamine distance traveled 1 unknown 100417314 Gm18525 - - 14|14 D3 crumbs homolog 1 pseudogene pseudo 102800312 Mm.33117 NR_110483 Lncppara Lincppara|Mirlet7bhg|linc-Ppara - 15 E2|15 long noncoding RNA near Ppara ncRNA 102634324 LOC102634324 - - 2 C1.3 eukaryotic translation initiation factor 2 subunit 1 pseudogene pseudo 105246873 Gm42079 - - 11|11 predicted gene, 42079 ncRNA 667268 Mm.480256 NM_001166744 ENSMUSG00000095973 Vmn1r116 EG667268|Gm8547 - 7|7 A3 vomeronasal 1 receptor 116 protein-coding 27807 303E12R - - - DNA segment, 303E12R (Research Genetics) unknown 67909 Mm.141471 NM_026449 ENSMUSG00000028938 Galntl5 1700021B12Rik|Galnt15 - 5|5 A3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5 protein-coding 620982 Mup-ps7 Gm12548 - 4 B3|4 major urinary protein, pseudogene 7 pseudo 381375 Mm.330312 NM_001080711 ENSMUSG00000075267 Pjvk Dfnb59|Gm1001 - 2|2 C3 pejvakin protein-coding 62594 D13Mit115 - - 13 7.34 cM DNA segment, Chr 13, Massachusetts Institute of Technology 115 unknown 15937 Mm.25613 NM_133662 ENSMUSG00000003541 Ier3 AI663993|IEX-1|cI-3|gly96 - 17|17 B1 immediate early response 3 protein-coding 108168800 XR_001783492 LOC108168800 - - 2 G1 uncharacterized LOC108168800 ncRNA 13995 Etohd1 - - - ethanol decreased 1 protein-coding 62875 D11Mit263 - - - DNA segment, Chr 11, Massachusetts Institute of Technology 263 unknown 110818 Tstap198-14 - - - tissue specific transplantation antigen P198-14 protein-coding 100035350 Bod9 BOD15.1 - 15 16.74 cM bone length and organs 9 unknown 111284 Hmgn1-rs2 Hmg14-rs2 - - high mobility group nucleosomal binding domain 1, related sequence 2 pseudo 492832 Bmd14 - - - bone mineral density 14 unknown 85138 D9Mit282 - - 9 72.23 cM DNA segment, Chr 9, Massachusetts Institute of Technology 282 unknown 381777 Mm.333124 Igkv1-110 Gm16634|Igk|K5.1 - 6 C1|6 31.12 cM immunoglobulin kappa variable 1-110 other 61981 D9Mit297 - - 9 18.24 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 297 unknown 103214 Mm.30529 NR_104123 ENSMUSG00000112230 Ifngas1 AI447422|Tmevpg1 - 10 D2|10 Ifng antisense RNA 1 ncRNA 100417504 Gm18654 - - 4|4 C3 flavin containing monooxygenase 2 pseudogene pseudo 72397 Mm.430709 NM_028226 ENSMUSG00000046667 Rbm12b1 3000004N20Rik|Rbm12b|Rbm12ba - 4|4 A1 RNA binding motif protein 12 B1 protein-coding 52224 D5Ertd215e - - 5 47.77 cM DNA segment, Chr 5, ERATO Doi 215, expressed unknown 100041008 Gm3092 - - 3|3 H4 crumbs homolog 1 pseudogene pseudo 102638881 XR_880138 Gm35338 - - 11 D|11 predicted gene, 35338 ncRNA 100504238 Gm20128 - - 3 D|3 28.51 cM predicted gene, 20128 pseudo 435309 Gm5654 EG435309 - 12|12 C3 ribosomal protein L18A pseudogene pseudo 234479 Mm.238026 NR_045822 Gm4890 A630049P17 - 8 C1|8 predicted gene 4890 ncRNA 171186 Mm.377167 NM_134168 ENSMUSG00000115170 Vmn1r38 V1rc13 - 6|6 C1 vomeronasal 1 receptor 38 protein-coding 19436 Rb(1.10)10Bnr Rb10Bnr - - Robertsonian translocation, Chr 1 and 10, Universitat Bonn/Rhein 10 other 108167815 XR_001779789 Gm46228 - - 10 B5.1|10 predicted gene, 46228 ncRNA 101056296 XM_011251333 LOC101056296 - - - DNA-binding protein inhibitor ID-3 protein-coding 625608 Gm11950 - - 11|11 A1 predicted gene 11950 pseudo 102637395 Gm34217 - - Y|Y predicted gene, 34217 ncRNA 667804 Gm14424 - - 2|2 C3 predicted gene 14424 protein-coding 628474 Gm15362 EG628474 - X A7.3|X WW domain binding protein 2 pseudogene pseudo 347722 Mm.291135 NM_178119 ENSMUSG00000055013 Agap1 Centg2|Ggap1|R75364|mKIAA1099 - 1|1 D ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 12311 Mm.4642 NM_007588 ENSMUSG00000023964 Calcr Clr|Ct-r - 6 A1|6 1.81 cM calcitonin receptor protein-coding 238564 Mm.60041 NM_001166030 ENSMUSG00000044951 Mylk4 EG238564 - 13|13 A3.2 myosin light chain kinase family, member 4 protein-coding 70420 Mm.34266 NM_027420 ENSMUSG00000039043 Arpin 2610034B18Rik - 7|7 D2 actin-related protein 2/3 complex inhibitor protein-coding 114069 Heal5 - - 12 57.68 cM wound healing/regeneration 5 unknown 668847 Gm9399 EG668847 - 14|14 E5 PRELI domain containing 1 pseudogene pseudo 544998 XR_141199 Gm16440 EG666878 - 14|14 A1 predicted gene 16440 unknown 239027 Mm.318350 NM_153800 ENSMUSG00000063506 Arhgap22 B230341L19Rik|RHOGAP2|p68RacGAP - 14|14 B Rho GTPase activating protein 22 protein-coding 258384 Mm.271316 NM_146389 ENSMUSG00000056696 Olfr1350 MOR222-3 - 7|7 A1 olfactory receptor 1350 protein-coding 100035463 Imab5 - - - intermale aggressive behavior 5 unknown 665802 XM_006535297 ENSMUSG00000107392 Gm7792 EG665802 - 5 E3|5 predicted gene 7792 protein-coding 102641029 XR_379083 LOC102641029 - - - uncharacterized LOC102641029 ncRNA 102637299 Mm.402076 XR_377310 ENSMUSG00000093570 Gm20714 - - 6 A1|6 1.81 cM predicted gene 20714 ncRNA 102636313 Mm.294770 XR_391033 1500002C15Rik - - 4|4 E2 RIKEN cDNA 1500002C15 gene ncRNA 102637538 XR_379515 ENSMUSG00000111033 Gm34322 - - 9 B|9 predicted gene, 34322 ncRNA 108167367 XR_001780217 Gm45963 - - 11 B1.3|11 predicted gene, 45963 ncRNA 27533 D0Mnp5 MUS235-3 - - DNA segment, Montpellier 5 unknown 21289 T(9;17)138Ca T138Ca - - reciprocal translocation, Chr 9 and 17, Carter 138 other 627664 Vmn2r-ps125 EG627664|Gm6778 - 17|17 A3.2 vomeronasal 2, receptor, pseudogene 125 pseudo 67873 Mm.278085 NM_026423 ENSMUSG00000004996 Mri1 2410018C20Rik - 8|8 C2 methylthioribose-1-phosphate isomerase 1 protein-coding 100038689 Mm.445351 NR_033538 ENSMUSG00000099907 Gm10421 - - 12 F2|12 predicted gene 10421 ncRNA 66369 Mm.287500 NM_025518 ENSMUSG00000031901 Dus2 2310016K04Rik|Dus2l - 8|8 D3 dihydrouridine synthase 2 protein-coding 100503152 Mm.405210 Gm19578 - - 18|18 52.38 cM predicted gene, 19578 unknown 102632323 Gm30426 - - 3|3 predicted gene, 30426 ncRNA 72527 2610529L02Rik - - 17|17 RIKEN cDNA 2610529L02 gene protein-coding 102631995 LOC102631995 - - 15 A1 breast cancer metastasis-suppressor 1-like pseudogene pseudo 102638188 Gm34810 - - 3|3 predicted gene, 34810 ncRNA 100042363 Rpl35a-ps2 Gm15434 - 1|1 H4 ribosomal protein L35A, pseudogene 2 pseudo 83554 Mm.251710 NM_031380 ENSMUSG00000020325 Fstl3 E030038F23Rik|Flrg - 10|10 C1 follistatin-like 3 protein-coding 102635154 XR_388923 LOC102635154 - - 11 C uncharacterized LOC102635154 ncRNA 100036020 Imab6 - - - intermale aggressive behavior 6 unknown 100035097 Manln2 - - 2 24.51 cM mandible length 2 unknown 100048970 Wtmq3 mQTL5 - - weight module QTL 3 unknown 102632156 NR_151471 2610318M16Rik - - 14|14 A1 RIKEN cDNA 2610318M16 gene ncRNA 61695 D6Mit230 - - 6 45.74 cM DNA segment, Chr 6, Massachusetts Institute of Technology 230 unknown 258668 Mm.377630 NM_146673 ENSMUSG00000096747 Olfr823 MOR210-4 - 10|10 D3 olfactory receptor 823 protein-coding 109279867 LOC109279867 Mm60 - - VISTA enhancer mm60 biological-region 105246096 XR_876006 Gm41439 - - 16 B2|16 predicted gene, 41439 ncRNA 74401 Mm.374834 NM_028914 ENSMUSG00000027229 Terb2 4933406J08Rik - 2|2 E5 telomere repeat binding bouquet formation protein 2 protein-coding 667492 Gm8664 EG667492 - 15|15 B3.1 lactate dehydrogenase A pseudogene pseudo 631319 Rpl13-ps5 EG631319|Gm7060 - X|X C3 ribosomal protein L13, pseudogene 5 pseudo 72588 Mm.70350 NR_152107 2700012I20Rik - - 9|9 B RIKEN cDNA 2700012I20 gene ncRNA 232827 Mm.246598 NM_177690 ENSMUSG00000035177 Nlrp2 E330007A02Rik|NBS1|Nalp2|PAN1|PYPAF2 - 7|7 A1 NLR family, pyrin domain containing 2 protein-coding 69724 Mm.182470 NM_027187 ENSMUSG00000052926 Rnaseh2a 2400006P09Rik|RNASEHI|RNHIA|RNHL - 8|8 C3 ribonuclease H2, large subunit protein-coding 102640910 XR_381310 Gm36862 - - 12 A1.1|12 predicted gene, 36862 ncRNA 100043263 Gm14880 - - X|X D predicted gene 14880 pseudo 402761 Mm.443172 A530064N14Rik - - 9|9 RIKEN cDNA A530064N14 gene protein-coding 211496 Mm.251553 NM_177599 ENSMUSG00000062036 4932415M13Rik - - 17|17 C RIKEN cDNA 4932415M13 gene ncRNA 77829 Mm.134224 A930036K24Rik - - 9|9 RIKEN cDNA A930036K24 gene protein-coding 106226 AI528516 - - - expressed sequence AI528516 unknown 54371 Mm.212446 NM_018763 ENSMUSG00000033350 Chst2 AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st - 9|9 E3.3 carbohydrate sulfotransferase 2 protein-coding 19885 Mm.4372 NM_011281 ENSMUSG00000028150 Rorc Nr1f3|RORgamma|TOR|Thor - 3|3 F2.1 RAR-related orphan receptor gamma protein-coding 110261 Tcrd-D - - - T cell receptor delta, D region other 116616 D7Tem18 - - - DNA segment, Chr 7, Tempel 18 unknown 108168713 XR_001783026 LOC108168713 - - 4 D2.2 uncharacterized LOC108168713 ncRNA 101055759 Mm.417636 XR_379175 ENSMUSG00000097535 Gm26592 - - 9 A3|9 predicted gene, 26592 ncRNA 666226 Gm7990 EG666226 - 8|8 C1 ribosomal protein L13 pseudogene pseudo 667527 Gm8685 EG667527 - 7|7 A3 NLR family, pyrin domain containing 4E pseudogene pseudo 110421 H3b Hd-1|Hd1|Hd2 - - histocompatibility 3b, Th stimulating protein-coding 100417859 Gm15263 - - 3|3 F2.1 special AT-rich sequence binding protein 1 pseudogene pseudo 258912 Mm.223318 NM_146910 ENSMUSG00000050343 Olfr1378 MOR129-2 - 11|11 B1.3 olfactory receptor 1378 protein-coding 74983 4930477O15Rik - - 5|5 RIKEN cDNA 4930477O15 gene protein-coding 100036484 Pymr - - 9 55.65 cM Plasmodium yoelli malaria resistance unknown 382097 Mm.293727 NM_001080776 ENSMUSG00000044860 Gm1123 AV052824|CLSP - 9|9 E3.3 predicted gene 1123 protein-coding 101055651 XM_017319846 LOC101055651 - - 3 F1 progestin and adipoQ receptor family member 6-like protein-coding 108168473 LOC108168473 - - X F5 chromobox protein homolog 1-like pseudo 100035110 Swrl2 - - - SWR lupus locus 2 unknown 667118 Mm.245357 NM_001166552 ENSMUSG00000102049 Zbed6 Gm8466|MGR - 1|1 E4 zinc finger, BED type containing 6 protein-coding 102638296 Mm.127408 XR_391401 ENSMUSG00000091864 Gm17102 - - 7 B3|7 28.25 cM predicted gene 17102 ncRNA 268723 Mm.39513 NM_175545 A830039N20Rik - - 14|14 A3 RIKEN cDNA A830039N20 gene unknown 102632096 XR_390982 Gm38442 - - 4 E2|4 predicted gene, 38442 ncRNA 100043203 Gm10310 - - 10|10 D3 predicted pseudogene 10310 protein-coding 665372 Gm15778 EG665372 - 6|6 G3 high mobility group box 1-like pseudogene pseudo 240095 Mm.246609 NM_001115075 ENSMUSG00000024459 H2-M5 CRW2|D130003B22Rik|H-2M5 - 17 B1|17 19.16 cM histocompatibility 2, M region locus 5 protein-coding 100534378 Gm21047 - - 5|5 C3.1 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 73893 Mm.216135 NM_178388 ENSMUSG00000049526 Tmem202 4930425N13Rik - 9|9 B transmembrane protein 202 protein-coding 13512 Mm.106811 NM_030596 ENSMUSG00000056632 Dsg3 bal - 18 A2|18 11.39 cM desmoglein 3 protein-coding 70832 Mm.398993 NR_102341 ENSMUSG00000097626 4921504A21Rik - - 5|5 A3 RIKEN cDNA 4921504A21 gene ncRNA 666961 Gm8383 EG666961 - X F3|X lysyl-tRNA synthetase pseudogene pseudo 192169 Mm.210882 NM_138668 ENSMUSG00000031634 Ufsp2 1810047C23Rik - 8|8 B1.1 UFM1-specific peptidase 2 protein-coding 105244022 XR_865767 Gm38331 - - 1 H4|1 predicted gene, 38331 ncRNA 329483 Mm.246777 NR_040637 ENSMUSG00000087226 Gm14015 9330126M15 - 2|2 E3 predicted gene 14015 ncRNA 100040563 Mm.457381 NM_001166630 ENSMUSG00000000579 Dynlt1c 100040603|Dynlt1d - 17|17 A1 dynein light chain Tctex-type 1C protein-coding 109413 Aaiq3 - - 2 2.77 cM aromatase activity QTL 3 unknown 66299 Mm.436803 2610019N06Rik - - 9|9 RIKEN cDNA 2610019N06 gene unknown 100504431 Gm20223 - - 5 C1|5 30.83 cM TIP41-like protein-like pseudo 245423 NM_001128625 ENSMUSG00000079584 Gm364 - - X|X A6 predicted gene 364 protein-coding 26879 Mm.153710 NM_020026 ENSMUSG00000043300 B3galnt1 B3galt3|b3GT3 - 3|3 E1 UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1 protein-coding 73265 Mm.214016 1700038P13Rik - - 17|17 RIKEN cDNA 1700038P13 gene unknown 245860 Mm.238266 NM_001003917 ENSMUSG00000033124 Atg9a AU019532|Apg9l1|Atg9|Atg9l1 - 1|1 C4 autophagy related 9A protein-coding 171243 Mm.377199 NM_134209 ENSMUSG00000066804 Vmn1r83 V1rg8 - 7|7 A1 vomeronasal 1 receptor 83 protein-coding 61365 D4Mit196 - - 4 20.16 cM DNA segment, Chr 4, Massachusetts Institute of Technology 196 unknown 433598 Gm5539 EG433598 - 3|3 D mortality factor 4 like 1 pseudogene pseudo 102631662 XR_381043 Gm29945 - - 11 A1|11 predicted gene, 29945 ncRNA 102637230 XR_378999 ENSMUSG00000109629 Gm34099 Gm45536 - 8 B2|8 predicted gene, 34099 ncRNA 102633925 XR_377395 Gm13782 - - 6 A3.3|6 12.53 cM predicted gene 13782 ncRNA 54388 Mm.30482 NM_018792 ENSMUSG00000038994 Hils1 H1.9|TISP64 - 11|11 D histone H1-like protein in spermatids 1 protein-coding 52729 D17Zt11e - - - DNA segment, Chr 17, Zdenek Trachtulec 11 expressed unknown 16974 Mm.321990 NM_008514 ENSMUSG00000030201 Lrp6 C030016K15Rik|Cd|Gw|ska26|ska|skax26 - 6 G1|6 65.37 cM low density lipoprotein receptor-related protein 6 protein-coding 385417 Gm14926 - - X|X E1 predicted gene 14926 pseudo 108167427 XR_001778125 Gm45985 - - 7 B4|7 predicted gene, 45985 ncRNA 67331 Mm.52511 NM_026094 ENSMUSG00000003341 Atp8b3 1700042F02Rik|1700056N23Rik|ATPIK|SAPLT - 10|10 C1 ATPase, class I, type 8B, member 3 protein-coding 85101 DXMit190 - - X 11.29 cM DNA Segment, Chr X, Massachusetts Institute of Technology 190 unknown 102635555 XR_874571 ENSMUSG00000115536 Gm32857 - - 14 C1|14 predicted gene, 32857 ncRNA 628870 Mm.336090 NM_001177567 ENSMUSG00000091455 Otogl EG628870|Gm6924 - 10|10 D1 otogelin-like protein-coding 14001 Etohi3 - - - ethanol induced 3 protein-coding 109245083 LOC109245083 - - - Fgf21 promoter region biological-region 100035126 Gpdc2 - - 1 50.78 cM G protein deficiency-induced colitis 2 unknown 492916 Opfa - - - open field activity unknown 102636177 XR_382694 Gm33317 - - 13 C3|13 predicted gene, 33317 ncRNA 492846 Otx2m2 Otmf2 - 2 73.59 cM orthodenticle homolog 2 modifier 2 unknown 102634764 XR_382884 Gm32268 - - 13 D2.1|13 predicted gene, 32268 ncRNA 100039413 Gm14294 - - 2|2 H4 predicted gene 14294 pseudo 73918 Mm.391529 XR_378090 4930404I20Rik Gm44272 - 6|6 G2 RIKEN cDNA 4930404I20 gene ncRNA 100503675 Gm13252 - - 4|4 65.03 cM cytochrome c, somatic-like pseudo 28126 Mm.439993 NM_178605 ENSMUSG00000025869 Nop16 AA409471|D13Wsu177e - 13 B1|13 28.83 cM NOP16 nucleolar protein protein-coding 100043580 Mm.482209 NR_030674 ENSMUSG00000000486 Gm4532 - - 7|7 F3 predicted gene 4532 ncRNA 319290 Mm.257181 A430091L06Rik - - 4|4 D1 RIKEN cDNA A430091L06 gene protein-coding 668887 Gm14017 Mrpl51p - 2|2 E5 mitochondrial ribosomal protein L51 pseudogene pseudo 14226 Mm.20453 NM_016863 ENSMUSG00000020635 Fkbp1b 12.6kDa|AW494148|FKBP12.6|calstabin2 - 12|12 A1.1 FK506 binding protein 1b protein-coding 52863 D16Bwg1278e - - 16 5.75 cM DNA segment, Chr 16, Brigham & Women's Genetics 1278 expressed unknown 668813 Gm9375 EG668813 - 7|7 B5 predicted gene 9375 pseudo 664785 Gm12608 Hspd1-8p - 4|4 C4 heat shock protein 1 (chaperonin) pseudogene 8 pseudo 623003 Gm13914 - - 2|2 E3 phosphoglucomutase 2 pseudogene pseudo 232930 Gm4880 EG232930 - 7|7 A3 myotubularin related protein 2 pseudogene pseudo 97819 Mm.441767 C80998 - - - expressed sequence C80998 unknown 102467251 n-TRtcg3 n-Tr17 - 13 A3.1|13 nuclear encoded tRNA arginine 3 (anticodon TCG) tRNA 100852391 Gm13319 - - 2 A2|2 11.75 cM myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 1 pseudo 109279874 LOC109279874 Mm79 - - VISTA enhancer mm79 biological-region 71844 Mm.258051 NM_170591 ENSMUSG00000114797 Nupl1 1700017F11Rik|Nup58|mKIAA0410 - 14|14 D1 nucleoporin like 1 protein-coding 23834 Mm.20912 NM_011799 ENSMUSG00000017499 Cdc6 CDC18L - 11|11 D cell division cycle 6 protein-coding 61050 D9Mit218 - - 9 2.46 cM DNA segment, Chr 9, Massachusetts Institute of Technology 218 unknown 102638059 Gm34713 - - 19|19 predicted gene, 34713 ncRNA 66416 Mm.29513 NM_023202 ENSMUSG00000041881 Ndufa7 14.5kDa|2400007M02Rik|CI-B14.5a - 17|17 B1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a) protein-coding 109791 Mm.21160 NM_025469 ENSMUSG00000024225 Clps 2200003J09Rik - 17|17 A3.3 colipase, pancreatic protein-coding 100035879 Lith16 - - - lithogenic gene 16 unknown 62081 D10Mit66 - - - DNA segment, Chr 10, Massachusetts Institute of Technology 66 unknown 102640651 XR_376848 Gm36665 - - 5 B1|5 predicted gene, 36665 ncRNA 12068 Mm.286457 NM_009748 ENSMUSG00000032757 Bet1 AW555236|Bet-1 - 6|6 A1 Bet1 golgi vesicular membrane trafficking protein protein-coding 67293 Mm.185800 NR_026733 ENSMUSG00000104861 3110039M20Rik - - 12|12 B3 RIKEN cDNA 3110039M20 gene ncRNA 56699 Mm.293378 NM_020006 ENSMUSG00000041598 Cdc42ep4 1500041M20Rik|Borg4|CEP4 - 11|11 E2 CDC42 effector protein (Rho GTPase binding) 4 protein-coding 53162 199O21-Sp6 - - - DNA segment, 199O21-Sp6 unknown 102633644 Gm28687 - - Y|Y predicted gene 28687 ncRNA 404549 Mm.377947 NM_206975 ENSMUSG00000095896 Ifna14 - - 4|4 C4 interferon alpha 14 protein-coding 27878 Mm.100665 NM_030245 ENSMUSG00000026563 Tada1 2900026B15Rik|D1Ertd251e|Staf42|Tada1l - 1 H2.3|1 73.74 cM transcriptional adaptor 1 protein-coding 105243692 XR_878127 Gm39520 - - X A7.3|X predicted gene, 39520 ncRNA 21828 Mm.20865 NM_011582 ENSMUSG00000021702 Thbs4 TSP4 - 13 C3|13 47.75 cM thrombospondin 4 protein-coding 61432 D5Mit239 - - 5 52.23 cM DNA segment, Chr 5, Massachusetts Institute of Technology 239 unknown 62024 D4Mit319 - - 4 20.46 cM DNA segment, Chr 4, Massachusetts Institute of Technology 319 unknown 105243330 XR_879358 Gm39283 - - 8 E2|8 predicted gene, 39283 ncRNA 113873 Vmn1r-ps34 V1r-ps5 - 6|6 D1 vomeronasal 1 receptor, pseudogene 34 pseudo 442822 NM_001002783 9530085L02Rik - - 9|9 A5.1 RIKEN cDNA 9530085L02 gene unknown 102640902 XR_390423 Gm11844 - - 4 A2|4 6.49 cM predicted gene 11844 ncRNA 68837 Mm.209750 NM_001080932 ENSMUSG00000039275 Foxk2 1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1 - 11|11 E2 forkhead box K2 protein-coding 100035660 Chlq4 - - 4 46.99 cM circulating hormone level QTL 4 unknown 21086 T(14;18)14Ad T14Ad - - reciprocal translocation, Chr 14 and 18, Adler 14 other 102634353 XR_388769 Gm31954 - - 11 B3|11 predicted gene, 31954 ncRNA 27747 D2Dcr15 - - - DNA segment, Chr 2, Derry C. Roopenian 15 unknown 102635796 XR_387699 Gm33044 - - 5 F|5 predicted gene, 33044 ncRNA 105892 Mm.38909 NM_001039720 ENSMUSG00000053168 9030619P08Rik - - 15|15 D3 lymphocyte antigen 6 complex pseudogene pseudo 112384 Eae9 - - 9 35.6 cM experimental allergic encephalomyelitis susceptibility 9 unknown 81877 Mm.290527 NM_031176 ENSMUSG00000033327 Tnxb Tn-mhc|Tnx - 17 B1|17 18.24 cM tenascin XB protein-coding 66105 Mm.49884 NM_025356 ENSMUSG00000078578 Ube2d3 1100001F19Rik|9430029A22Rik|AA414951 - 3|3 G3 ubiquitin-conjugating enzyme E2D 3 protein-coding 105242770 Gm38897 - - 6|6 predicted gene, 38897 ncRNA 69522 Mm.390530 NR_045490 ENSMUSG00000112701 2310002D06Rik - - 12|12 C3 RIKEN cDNA 2310002D06 gene ncRNA 231717 Mm.12654 NM_175474 ENSMUSG00000044134 Fam109a A230106M15Rik|AU017694|IPIP27A|Ses1 - 5|5 F family with sequence similarity 109, member A protein-coding 100036289 Egaq2 - - 17 19.62 cM early growth adjusted QTL 2 unknown 105244809 XR_868800 Gm40354 - - 6 A1|6 predicted gene, 40354 ncRNA 102632711 Gm7284 EG639992 - 5 G2|5 76.1 cM 2-acylglycerol O-acyltransferase 2-A-like pseudo 102642602 LOC102642602 - - - 60S ribosomal protein L22 protein-coding 100035264 Dvs1 Dvs-1 - - dorsoventral vaginal septum 1 unknown 433715 Gm11249 - - 4|4 C1 ribosomal protein S2 pseudogene pseudo 215418 Mm.491094 NM_153287 ENSMUSG00000032515 Csrnp1 4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3 - 9|9 F4 cysteine-serine-rich nuclear protein 1 protein-coding 195176 Mm.342177 Igh-VX24 - - 12 F2|12 immunoglobulin heavy chain (X24 family) other 102636864 XR_387317 Gm33817 - - 1 E2.3|1 predicted gene, 33817 ncRNA 58802 Mm.440652 NM_021452 ENSMUSG00000054934 Kcnmb4 1700058G18Rik|2900045G12Rik - 10|10 D2 potassium large conductance calcium-activated channel, subfamily M, beta member 4 protein-coding 100503655 Mm.482619 Gm19817 - - 3|3 26.55 cM predicted gene, 19817 unknown 100036539 Gm13999 - - - predicted gene 13999 protein-coding 14005 Etohi7 - - - ethanol induced 7 protein-coding 100041332 Gm11984 - - 11|11 A1 predicted gene 11984 pseudo 359990 DXMgc128 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 128 unknown 12845 Mm.45071 NM_016685 ENSMUSG00000031849 Comp TSP5 - 8 B3.3|8 34.15 cM cartilage oligomeric matrix protein protein-coding 62578 D12Mit158 - - 12 38.14 cM DNA segment, Chr 12, Massachusetts Institute of Technology 158 unknown 627074 Gm15236 EG627074 - X|X F5 predicted gene 15236 protein-coding 319313 A830092I05Rik - - 17|17 RIKEN cDNA A830092I05 gene protein-coding 100418166 Gm19048 - - 1|1 H1 ash2 (absent, small, or homeotic)-like pseudogene pseudo 109286567 LOC109286567 - - - Isl1 promoter region biological-region 68273 Mm.196045 NM_026651 ENSMUSG00000028700 Pomgnt1 0610016I07Rik|4930467B06Rik - 4|4 D1 protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase protein-coding 61693 D6Mit241 - - 6 27.66 cM DNA segment, Chr 6, Massachusetts Institute of Technology 241 unknown 69562 Mm.193924 NM_027118 ENSMUSG00000041297 Cdk13 2310015O17Rik|Cdc2l5 - 13|13 A2 cyclin-dependent kinase 13 protein-coding 62938 D11Mit339 - - 11 39.47 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 339 unknown 100417705 Gm14829 - - X|X C3 zinc finger, FYVE domain containing 19 pseudogene pseudo 59006 Mm.141157 NM_021503 ENSMUSG00000028116 Myoz2 1110012I24Rik|Fatz-2|Myozl2 - 3|3 G1 myozenin 2 protein-coding 102465618 NR_105988 ENSMUSG00000106597 Mir7021 mmu-mir-7021 - 4|4 E1 microRNA 7021 ncRNA 18712 Mm.405293 NM_008842 ENSMUSG00000024014 Pim1 Pim-1 - 17 A3.3|17 15.38 cM proviral integration site 1 protein-coding 667705 Mm.376656 NR_033499 ENSMUSG00000073234 Gm8773 EG667705|Gm29287 - 5|5 A1 predicted gene 8773 ncRNA 102634924 LOC102634924 - - 17 E3 60S ribosomal protein L39 pseudogene pseudo 110401 Evi31 - - - ecotropic viral integration site 31 protein-coding 320463 Mm.484506 NR_045641 ENSMUSG00000036381 F630111L10Rik - - 3|3 D RIKEN cDNA F630111L10 gene ncRNA 22403 Mm.13828 NM_016873 ENSMUSG00000027656 Wisp2 Ccn5|Crgr4|Ctgfl|Rcop1 - 2|2 H3 WNT1 inducible signaling pathway protein 2 protein-coding 69345 Mm.425217 NR_045478 ENSMUSG00000099391 1700003C15Rik - - 5 A1|5 RIKEN cDNA 1700003C15 gene ncRNA 56012 Mm.219627 NM_018870 ENSMUSG00000020475 Pgam2 - - 11|11 A1 phosphoglycerate mutase 2 protein-coding 85096 DXMit163 - - X 9.87 cM DNA segment, Chr X, Massachusetts Institute of Technology 163 unknown 102465641 NR_106026 ENSMUSG00000098540 Mir7059 Gm27534|mmu-mir-7059 - 7|7 F3 microRNA 7059 ncRNA 102636014 XR_389638 Gm33206 - - 3 A3|3 predicted gene, 33206 ncRNA 100417470 Gm18632 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 100038436 Mm.454522 Gm10503 - - 17 A3.3|17 predicted gene 10503 ncRNA 104128 Egm2 - - - egg modifier locus 2 protein-coding 223774 Mm.41512 NM_145477 ENSMUSG00000035845 Alg12 ECM39 - 15|15 E3 asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase) protein-coding 105246526 Gm41801 - - 19|19 predicted gene, 41801 ncRNA 105244847 XR_869194 Gm40381 - - 6 C3|6 predicted gene, 40381 ncRNA 433319 Gm5528 EG433319 - 1|1 C3 predicted gene 5528 pseudo 624605 Gm12245 - - 11|11 B1.3 reduced expression 3 (Rex3) pseudogene pseudo 545471 Mm.451002 NM_001034900 ENSMUSG00000074731 Zfp345 - - 2 G3|2 zinc finger protein 345 protein-coding 56463 Mm.439987 NM_019776 ENSMUSG00000001424 Snd1 AL033314|Tudor-SN - 6|6 A3.3 staphylococcal nuclease and tudor domain containing 1 protein-coding 14262 Mm.2900 NM_008030 ENSMUSG00000026691 Fmo3 AW111792 - 1 H2.1|1 70.34 cM flavin containing monooxygenase 3 protein-coding 71449 Mm.270569 NM_144877 ENSMUSG00000026694 Mettl13 5630401D24Rik - 1|1 H2.1 methyltransferase like 13 protein-coding 100503629 Gm11704 - - 11|11 80.91 cM predicted gene 11704 pseudo 27579 D5Buc10 - - 5 37.51 cM DNA segment, Chr 5, Bucan 10 unknown 85158 D6Mit332 - - 6 55.22 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 332 unknown 56442 Mm.29344 NM_019760 ENSMUSG00000019877 Serinc1 1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253 - 10|10 B4 serine incorporator 1 protein-coding 27908 D16Ium57 - - 16 42.39 cM DNA segment, Chr 16, Indiana University Medical 57 unknown 100039287 Gm2139 - - 12|12 D3 LSM14 homolog A pseudogene pseudo 100125596 Cyp2d35-ps Gm20572 - 15|15 E1 cytochrome P450, family 2, subfamily d, member 35, pseudogene pseudo 102638826 Gm35300 - - 3|3 predicted gene, 35300 ncRNA 102632268 Mm.451509 Gm26974 - - 7|7 predicted gene, 26974 ncRNA 105242821 XR_001785416 Gm38927 - - 6 G3|6 predicted gene, 38927 ncRNA 109765 Etn2 Sd - - early transposon element insertion site 2 other 16409 Mm.262106 NM_008401 ENSMUSG00000030786 Itgam CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a - 7|7 F3 integrin alpha M protein-coding 117575 DXMgc6 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 6 unknown 105243219 XR_878934 Gm39198 - - 8 B3.3|8 predicted gene, 39198 ncRNA 100043040 Mm.415417 NR_030694 ENSMUSG00000071456 1110002L01Rik - - 12|12 A1.1 RIKEN cDNA 1110002L01 gene ncRNA 671466 Gm14024 - - 2|2 F1 predicted gene 14024 protein-coding 108099 Mm.33649 NM_145401 ENSMUSG00000028944 Prkag2 2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS - 5|5 A3 protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 259112 Mm.377853 NM_147108 ENSMUSG00000059473 Olfr979 MOR223-1 - 9|9 A5.1 olfactory receptor 979 protein-coding 100417728 Gm18789 - - 9|9 A2 coenzyme Q10 homolog B pseudogene pseudo 102637041 XR_386613 Gm33950 - - 19 B|19 predicted gene, 33950 ncRNA 100038388 Mm.421338 XR_388098 Gm10614 - - 8 E1|8 predicted gene 10614 unknown 105180385 F830047L01Rik - - - Riken cDNA F830047L01 gene protein-coding 240110 Gm4945 EG240110 - 17|17 C ribosomal protein L29 pseudogene pseudo 108167941 XR_001780390 Gm46303 - - 11 E2|11 predicted gene, 46303 ncRNA 433180 Mm.57302 NM_001013797 ENSMUSG00000055095 Spink6 EG433180 - 18|18 B3 serine peptidase inhibitor, Kazal type 6 protein-coding 212163 Mm.23293 NM_178670 ENSMUSG00000047466 8030462N17Rik Akd2|Ark2N - 18|18 E3 RIKEN cDNA 8030462N17 gene protein-coding 638995 Mm.486689 Gm7256 EG638995 - 1|1 A5 predicted gene 7256 unknown 17480 Mm.4864 NM_010823 ENSMUSG00000006389 Mpl CD110|TPO-R|c-mpl|hlb219 - 4 D2.1|4 54.61 cM myeloproliferative leukemia virus oncogene protein-coding 73880 Mm.417824 4930415C11Rik - - 13|13 RIKEN cDNA 4930415C11 gene protein-coding 16641 Mm.56899 NM_010652 ENSMUSG00000030167 Klrc1 CD159a|NKG2A|NKG2B - 6|6 F3 killer cell lectin-like receptor subfamily C, member 1 protein-coding 61114 D2Mit490 - - 2 68.52 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 490 unknown 100642166 NR_040366 ENSMUSG00000090015 Gm15446 - - 5 F|5 53.28 cM predicted gene 15446 ncRNA 16746 l1Rk5 l(1)-5Rk - - lethal, Chr 1, Roderick 5 unknown 667166 Vmn1r-ps71 EG667166|EG667302|Gm8491|Gm8562|Vmn1r-ps72 - 7|7 A3 vomeronasal 1 receptor, pseudogene 71 pseudo 102632146 XR_001780673 Gm30296 - - 12 E|12 predicted gene, 30296 ncRNA 545618 Gm12463 - - 4|4 B1 aurora kinase C pseudogene pseudo 225416 Rps19-ps13 EG225416|Gm4838 - 18|18 B3 ribosomal protein S19, pseudogene 13 pseudo 76167 Mm.156035 NM_029532 ENSMUSG00000029402 Snrnp35 6330548G22Rik - 5|5 F small nuclear ribonucleoprotein 35 (U11/U12) protein-coding 100039842 Gm20817 - - Y|Y predicted gene, 20817 protein-coding 100417563 Gm18691 - - 6|6 G1 taste receptor, type 2, member 125 pseudogene pseudo 101055863 Mm.331671 NM_001277487 ENSMUSG00000095048 Gm11239 - - 4 C3|4 36.06 cM predicted gene 11239 protein-coding 545136 Mm.324745 NM_001081254 ENSMUSG00000078907 Fam186b EG545136 - 15|15 F1 family with sequence similarity 186, member B protein-coding 170472 Mm.379351 NM_130454 ENSMUSG00000020752 Recql5 RecQ5|Recq5b|Recql5b - 11|11 E2 RecQ protein-like 5 protein-coding 664876 Gm7385 EG664876|Gm1461 - 8|8 B2 predicted gene 7385 protein-coding 105245234 LOC105245234 - - 10 C1 60S ribosomal protein L23a pseudogene pseudo 100416456 Gm18119 - - 10|10 C1 ribosomal protein L15 pseudogene pseudo 664981 Gm7436 EG664981 - 9|9 F1 predicted gene 7436 pseudo 27863 D0Nds24 - - - DNA segment, Nuffield Department of Surgery 24 unknown 100831 AU022531 - - - expressed sequence AU022531 protein-coding 102636051 XR_001784505 Gm13097 - - 4 E2|4 79.51 cM predicted gene 13097 ncRNA 216874 Mm.473726 NM_178116 ENSMUSG00000040712 Camta2 Kiaa0909-hp|mKIAA0909 - 11 B3|11 43.21 cM calmodulin binding transcription activator 2 protein-coding 380975 Mm.268451 NM_001002900 ENSMUSG00000093550 Higd1c Gm921|HIG1-4|Yghl1-4 - 15|15 F1 HIG1 domain family, member 1C protein-coding 102633495 XR_381636 Gm31307 - - 12 C2|12 predicted gene, 31307 ncRNA 18719 Mm.217214 NM_008846 ENSMUSG00000024867 Pip5k1b PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7 - 19|19 B phosphatidylinositol-4-phosphate 5-kinase, type 1 beta protein-coding 110224 Igh-Bgl - - - immunoglobulin heavy chain Bgl other 100034799 Chol9 - - 17 59.77 cM cholesterol 9 unknown 100710 Mm.32959 NM_175310 ENSMUSG00000034021 Pds5b AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979 - 5|5 G3 PDS5 cohesin associated factor B protein-coding 100503134 Gm19569 - - 9|9 43.36 cM predicted gene, 19569 ncRNA 76794 Mm.472839 NR_102289 ENSMUSG00000086728 Man2c1os 2410133F24Rik|AI851351 - 9 B|9 mannosidase, alpha, class 2C, member 1, opposite strand ncRNA 52540 D13Ertd104e - - 13 66.84 cM DNA segment, Chr 13, ERATO Doi 104, expressed unknown 108167430 Gm18908 - - 7|7 B5 pyruvate dehydrogenase complex, component X pseudogene pseudo 100034820 Musz5 Ms5 - - muscle size 5 unknown 100035839 Pnhdlc1 - - - plasma non-HDL cholesterol 1 unknown 258096 Mm.159619 NM_001013575 ENSMUSG00000051611 Olfr112 4930580F03Rik|MOR218-4 - 17|17 B1 olfactory receptor 112 protein-coding 105245257 Gm40735 - - 10|10 predicted gene, 40735 ncRNA 102640672 XR_379911 Gm36686 - - 9 F3|9 predicted gene, 36686 ncRNA 78666 9530067L11Rik - - 8|8 RIKEN cDNA 9530067L11 gene protein-coding 15220 Mm.44235 NM_008239 ENSMUSG00000038415 Foxq1 HFH-1|Hfh1|Hfh1l|sa - 13 A3.2|13 13.46 cM forkhead box Q1 protein-coding 629924 Gm11556 - - 11|11 D predicted gene 11556 protein-coding 100124660 Trbv4 Tcrb-V10 - 6 19.13 cM|6 B1 T cell receptor beta, variable 10 other 78762 Mm.362149 NR_153850 4933424L21Rik - - 11|11 RIKEN cDNA 4933424L21 gene ncRNA 101540 Mm.1881 NM_178900 ENSMUSG00000041187 Prkd2 AI325941|PKD2 - 7|7 A2 protein kinase D2 protein-coding 665973 Gm15571 EG665973 - 12|12 C2 ribosomal protein S8 pseudogene pseudo 258794 Mm.377695 NM_146798 ENSMUSG00000066747 Olfr878 MOR163-1 - 9|9 A4 olfactory receptor 878 protein-coding 102634952 XR_380259 Gm32411 - - 10 B1|10 predicted gene, 32411 ncRNA 105245707 Gm41115 - - 14 A3|14 host cell factor C1 regulator 1 pseudogene pseudo 73246 Mm.30172 NM_028478 ENSMUSG00000029370 Rassf6 1600016B17Rik - 5|5 E1 Ras association (RalGDS/AF-6) domain family member 6 protein-coding 13360 Mm.249342 NM_007856 ENSMUSG00000058454 Dhcr7 AA409147 - 7|7 F5 7-dehydrocholesterol reductase protein-coding 57783 Mm.259671 NM_021327 ENSMUSG00000020400 Tnip1 ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN - 11|11 B1.3 TNFAIP3 interacting protein 1 protein-coding 236047 Igkv4-74 Gm10880|Gm192|IgVkai4 - 6 C1|6 immunoglobulin kappa variable 4-74 other 258548 Mm.391456 NM_146555 ENSMUSG00000096858 Olfr805 MOR110-4 - 10|10 D3 olfactory receptor 805 protein-coding 102634284 XR_866451 Gm38462 Hoxd3os1 - 2 C3|2 predicted gene, 38462 protein-coding 102631907 Mm.447303 Gm30123 - - 19|19 predicted gene, 30123 ncRNA 102465770 NR_106128 ENSMUSG00000098873 Mir7668 Gm27961|mmu-mir-7668 - 7|7 B1 microRNA 7668 ncRNA 108167749 XR_001779567 LOC108167749 - - 1 H4 uncharacterized LOC108167749 ncRNA 492990 Lrdg1 - - 1 44.69 cM light induced retinal degeneration 1 unknown 101055732 Gm15106 - - X|X 68.46 cM predicted gene 15106 pseudo 105245854 XR_874947 Gm41243 - - 14 E4|14 predicted gene, 41243 ncRNA 100416660 Gm18174 - - X|X F2 predicted gene, 18174 pseudo 16825 Mm.327442 NM_010697 ENSMUSG00000025223 Ldb1 CLIM2|NLI - 19 C3|19 38.75 cM LIM domain binding 1 protein-coding 109279969 LOC109279969 Mm607 - - VISTA enhancer mm607 biological-region 102633625 XR_379703 Gm31409 Gm45561 - 9 E3.3|9 predicted gene, 31409 ncRNA 67569 Mm.25252 NM_026243 ENSMUSG00000019888 Mgat4c 9130411I17Rik|GntIVh - 10|10 D1 MGAT4 family, member C protein-coding 493077 Lmr15 - - 11 39.47 cM leishmaniasis resistance 15 unknown 102639611 XR_389806 Gm35881 - - 5 B1|5 predicted gene, 35881 ncRNA 320483 Mm.210702 E130314K07Rik - - 6|6 RIKEN cDNA E130314K07 gene protein-coding 105243057 XR_869951 Gm39089 - - 7 F3|7 predicted gene, 39089 ncRNA 21979 Tp(Y)1Ct Sxr|Tp1Ct - - transposition, Chr Y, Cattanach 1 other 245880 Mm.472750 NM_145155 ENSMUSG00000029636 Wasf3 Scar3|Wave3 - 5|5 G3 WAS protein family, member 3 protein-coding 65945 Mm.38993 NM_023051 ENSMUSG00000039953 Clstn1 1810034E21Rik|Cst-1|Cstn1 - 4|4 E2 calsyntenin 1 protein-coding 68444 Mm.443212 NR_003552 Cyp2d13 1300007K12Rik - 15 E1|15 38.67 cM cytochrome P450, family 2, subfamily d, polypeptide 13 pseudo 268930 Mm.182193 NM_023058 ENSMUSG00000023908 Pkmyt1 6230424P17|AW209059|Myt1 - 17|17 A3.3 protein kinase, membrane associated tyrosine/threonine 1 protein-coding 18357 Mm.246544 NM_147041 ENSMUSG00000060205 Olfr57 IF12|MOR139-3 - 10|10 C1 olfactory receptor 57 protein-coding 170733 Mm.155514 NM_133203 ENSMUSG00000014543 Klra17 Ly49q|Ly49q1 - 6|6 F3 killer cell lectin-like receptor, subfamily A, member 17 protein-coding 72552 Mm.36756 NM_175185 ENSMUSG00000034189 Hsdl1 2700067E09Rik - 8|8 E1 hydroxysteroid dehydrogenase like 1 protein-coding 61800 D2Mit403 - - 2 71.02 cM DNA segment, Chr 2, Massachusetts Institute of Technology 403 unknown 105242623 XR_868947 Gm13850 - - 6 A3.3|6 12.87 cM predicted gene 13850 ncRNA 105245227 Gm40711 - - 10|10 predicted gene, 40711 ncRNA 109280101 LOC109280101 Mm1088 - - VISTA enhancer mm1088 biological-region 102247 Mm.200898 NM_018743 ENSMUSG00000031545 Gpat4 AU041707|AW545732|Agpat6|Tsarg7 - 8|8 A2 glycerol-3-phosphate acyltransferase 4 protein-coding 75033 Mm.335329 NM_175213 ENSMUSG00000043289 Mei4 4930486G11Rik - 9|9 E1 meiotic double-stranded break formation protein 4 protein-coding 108167485 XM_017312474 LOC108167485 - - 7 E1 putative uncharacterized protein FLJ37770 pseudogene pseudo 493025 Nktcn1 Nkt1 - 1 76.25 cM natural killer T cell numbers 1 unknown 270084 Mm.21463 NM_173014 ENSMUSG00000033192 Lpcat2 1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2 - 8|8 C5 lysophosphatidylcholine acyltransferase 2 protein-coding 246727 Mm.204887 NM_145226 ENSMUSG00000032661 Oas3 Oasl10 - 5 F|5 60.64 cM 2'-5' oligoadenylate synthetase 3 protein-coding 102631559 Gm29866 - - Y|Y predicted gene, 29866 protein-coding 100418010 Gm18945 - - 13|13 D2.3 elongation protein 4 homolog pseudogene pseudo 100035860 Athla1 - - 2 73.53 cM atherosclerotic lesion area 1 unknown 100416932 Gm18327 - - 6|6 A3.1 sperm adhesion molecule 1 pseudogene pseudo 100286835 Gm17804 - - 16|16 B5 eukaryotic translation initiation factor 4A1 pseudogene pseudo 100042880 XR_882215 ENSMUSG00000081895 Rpl17-ps10 Gm10294 - 7|7 D1 ribosomal protein L17, pseudogene 10 pseudo 100043915 Mm.466613 NM_001256480 ENSMUSG00000078897 Gm4724 - - 2 H4|2 predicted gene 4724 protein-coding 63003 D12Mit288 - - 12 37.05 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 288 unknown 71251 Mm.410789 4933430L12Rik - - 7|7 A2 RIKEN cDNA 4933430L12 gene protein-coding 110120459 LOC110120459 - - - VISTA enhancer mm1494 biological-region 102632015 Gm30195 - - 12 A1.3|12 predicted gene, 30195 pseudo 100418312 Gm14912 - - X|X E1 heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene pseudo 75892 Mm.159614 4930578I07Rik - - 14|14 D1 RIKEN cDNA 4930578I07 gene ncRNA 16308 In(8pq)1Rl In1Rl - - inversion, Chr 8, Russell 1 other 105245366 XR_873170 Gm40833 - - 13 A3.1|13 predicted gene, 40833 ncRNA 381380 Mm.486398 9430088L24Rik Gm1633 - 2|2 D RIKEN cDNA 9430088L24 gene protein-coding 102637194 XR_379148 Gm34069 - - 9 A1|9 predicted gene, 34069 ncRNA 102467589 n-TPtgg4 n-Tp14 - 11 B1.2|11 nuclear encoded tRNA proline 4 (anticodon TGG) tRNA 100101431 Char9 - - - P. chabaudi malaria resistance QTL 9 unknown 666948 Gm8375 EG666948 - 15 E1|15 ribosomal protein S2 pseudogene pseudo 666143 Gm7947 EG666143 - 17|17 A1 predicted gene 7947 pseudo 627085 Mm.457899 NM_001085542 ENSMUSG00000078506 Gm13124 - - 4|4 E1 predicted gene 13124 protein-coding 320047 4833444G19Rik - - 9|9 D RIKEN cDNA 4833444G19 gene unknown 171274 Mm.377226 NM_134240 ENSMUSG00000061022 Vmn1r222 V1rh16 - 13|13 A3.1 vomeronasal 1 receptor 222 protein-coding 620387 Igkv8-22 - - 6|6 C1 immunoglobulin kappa chain variable 8-22 pseudo 100036135 Lgth4 - - 9 17.8 cM body length 4 unknown 381284 Mm.193346 NM_001310428 ENSMUSG00000084989 Crocc2 E030010N08Rik|Gm976 - 1|1 D ciliary rootlet coiled-coil, rootletin family member 2 protein-coding 258988 Mm.377777 NM_146986 ENSMUSG00000095236 Olfr38 18A|MOR257-2 - 6 B2.1|6 20.89 cM olfactory receptor 38 protein-coding 105246397 XR_877298 Gm41689 - - 18 B1|18 predicted gene, 41689 ncRNA 102640979 Gm20610 - - 10|10 32.13 cM predicted gene 20610 ncRNA 102632132 XR_374979 Gm30286 - - 2 F1|2 predicted gene, 30286 ncRNA 73694 Mm.104959 NM_028611 ENSMUSG00000024082 Ndufaf7 2410091C18Rik|AL033374|PRO1853 - 17|17 E3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7 protein-coding 71161 Mm.443533 NR_040684 ENSMUSG00000086446 Prkag2os1 4933426D04Rik - 5|5 A3 protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1 ncRNA 100125391 Vmn2r-ps150 - - Y|Y C1 vomeronasal 2, receptor, pseudogene 150 pseudo 105244281 Gm39921 - - 2|2 predicted gene, 39921 ncRNA 56068 Mm.143724 NM_019496 ENSMUSG00000042225 Ammecr1 6230420G18Rik - X|X F2 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 protein-coding 105246268 XR_876766 Gm15331 - - 17 B1|17 18.09 cM predicted gene 15331 ncRNA 100049591 Fmtq6 - - - femur mechanical trait QTL 6 unknown 66849 Mm.291593 NM_025800 ENSMUSG00000047714 Ppp1r2 0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2 - 16 B2|16 21.41 cM protein phosphatase 1, regulatory (inhibitor) subunit 2 protein-coding 108168156 XR_001781249 LOC108168156 - - 14 C1 uncharacterized LOC108168156 ncRNA 100416130 Gm17932 - - 14|14 E3 predicted gene, 17932 pseudo 100036405 Rfpw3 Rf3 - - retroperitoneal fat pad weight 3 unknown 215693 Mm.336238 NM_175446 ENSMUSG00000052676 Zmat1 A230096A06|AW990744|B930008K04Rik - X|X E3 zinc finger, matrin type 1 protein-coding 72007 Mm.38832 NM_173182 ENSMUSG00000039286 Fndc3b 1600019O04Rik|AW550168|Fad104|mKIAA4164 - 3|3 A3 fibronectin type III domain containing 3B protein-coding 105246832 XR_879364 Gm42056 - - 8 E2|8 predicted gene, 42056 ncRNA 101056245 Gm29809 - - 12 C1|12 predicted gene, 29809 pseudo 102465556 NR_105887 ENSMUSG00000099259 Mir6922 Gm27269|mmu-mir-6922 - 11|11 B2 microRNA 6922 ncRNA 546497 Gm12181 Hn1l-ps2 - 11|11 B1.2 HN1-like pseudogene 2 pseudo 105245697 XR_874407 Gm41108 - - 14 A3|14 predicted gene, 41108 ncRNA 102635444 XR_377047 Gm32780 - - 5 C3.3|5 predicted gene, 32780 ncRNA 100040489 Gm20844 - - Y|Y predicted gene, 20844 protein-coding 68118 Mm.482360 NM_026566 ENSMUSG00000037204 Atg101 9430023L20Rik|AA407441|AU022967 - 15|15 F1 autophagy related 101 protein-coding 170706 Mm.24750 NM_019432 ENSMUSG00000050777 Tmem37 AI173373|AW540203|Pr|Pr1 - 1|1 E2.3 transmembrane protein 37 protein-coding 67681 Mm.290166 NM_026310 ENSMUSG00000057388 Mrpl18 1010001C05Rik|C79879|HSPC071|MRP-L18 - 17|17 A1 mitochondrial ribosomal protein L18 protein-coding 100417646 Gm18735 - - 17|17 C mitochondrial ribosomal protein L45 pseudogene pseudo 217732 Mm.22337 NM_173735 ENSMUSG00000034157 Cipc 2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737 - 12|12 D2 CLOCK interacting protein, circadian protein-coding 102631807 XR_382648 Gm30049 - - 13 C1|13 predicted gene, 30049 ncRNA 110888 Hivep1-rs1 - - - HIV type I enhancer binding protein 1, related sequence 1 protein-coding 66860 Mm.27917 NM_198294 ENSMUSG00000035168 Tanc1 1200003E16Rik|Tanc|mKIAA1728 - 2|2 C1.1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 12000 Mm.383171 NM_019404 ENSMUSG00000031390 Avpr2 ADHR|DI1|DIR|ND1|V2R|VPV2R - X A7.3|X 37.46 cM arginine vasopressin receptor 2 protein-coding 100316809 NR_035440 ENSMUSG00000084535 Mir1906-1 Mir1906|Mirn1906|mmu-mir-1906|mmu-mir-1906-1 - 12 F1|12 60.26 cM microRNA 1906-1 ncRNA 76056 Mm.443345 5830443J22Rik - - 9|9 RIKEN cDNA 5830443J22 gene protein-coding 99382 Mm.35850 NM_178890 ENSMUSG00000032724 Abtb2 AW539457|BPOZ-2 - 2|2 E2 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 73993 Mm.387850 4930448A20Rik - - - RIKEN cDNA 4930448A20 gene protein-coding 105245010 Gm40524 - - 9|9 predicted gene, 40524 ncRNA 404406 Olfr581-ps1 GA_x5J8B7W5P47-202028-201789|MOR8-8_p - 7|7 E3 olfactory receptor 581, pseudogene 1 pseudo 259049 Mm.377807 NM_147047 ENSMUSG00000073945 Olfr618 MOR31-9 - 7|7 E3 olfactory receptor 618 protein-coding 100040371 Gm15189 - - X|X F4 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 258374 Mm.377464 NM_146377 ENSMUSG00000058114 Olfr127 MOR218-7 - 17|17 B1 olfactory receptor 127 protein-coding 102640587 Gm36616 - - 11|11 predicted gene, 36616 ncRNA 666634 XR_105012 Gm8203 EG666634 - 6|6 E3 H2A histone family, member Z pseudogene pseudo 14625 Mm.32242 NM_010293 ENSMUSG00000053624 Gykl1 AI449806|Gk-rs1 - 18 D1|18 28.25 cM glycerol kinase-like 1 protein-coding 102637838 LOC102637838 - - 7 B1 60S ribosomal protein L23a pseudogene pseudo 102631496 Gm11528 - - 11|11 59.01 cM predicted gene 11528 ncRNA 639530 Gm7270 EG639530 - 3|3 E1 spermine synthase pseudogene pseudo 68428 Mm.181033 NM_133186 ENSMUSG00000026389 Steap3 1010001D01Rik|Tsap6|pHyde - 1|1 E2.3 STEAP family member 3 protein-coding 56216 Mm.439759 NM_024414 ENSMUSG00000030806 Stx1b Stx1b2|Stx1bl|Syn1b - 7|7 F3 syntaxin 1B protein-coding 75431 3110001L01Rik - - 10|10 B2 RIKEN cDNA 3110001L01 gene protein-coding 102631897 Astx1c Gm14962 - X|X 49.81 cM amplified spermatogenic transcripts X encoded 1C protein-coding 100502650 Gm11997 - - 11|11 6.16 cM predicted gene 11997 pseudo 66213 Mm.24159 NM_025426 ENSMUSG00000020397 Med7 1110063B05Rik|Crsp33|Crsp9 - 11|11 B1.1 mediator complex subunit 7 protein-coding 73884 Mm.86986 NM_028673 ENSMUSG00000027520 Zdbf2 4930431J08Rik|9330107J05Rik - 1|1 C2 zinc finger, DBF-type containing 2 protein-coding 269061 Mm.490260 NM_172302 ENSMUSG00000034820 Cpsf7 5730453I16Rik|AL022757|C330017N18Rik - 19|19 A cleavage and polyadenylation specific factor 7 protein-coding 102635881 XR_390460 Gm33105 - - 4 A5|4 predicted gene, 33105 ncRNA 105245920 XR_875156 Gm41300 - - 15 B3.1|15 predicted gene, 41300 ncRNA 105244664 XR_868035 Gm40231 - - 4 D1|4 predicted gene, 40231 ncRNA 102640352 XR_871305 Gm36436 - - 9 F3|9 predicted gene, 36436 ncRNA 112262 Ots1 Qst1 - 6 44.78 cM ovarian teratoma susceptibility 1 unknown 101918 Mm.482702 BB144871 - - - expressed sequence BB144871 unknown 100035790 Tesw2 - - 10 66.75 cM testis weight 2 unknown 269810 Gm5051 EG269810 - 6|6 G2 predicted gene 5051 pseudo 114682 Dbsty1 - - 1 17.67 cM diabesity 1 unknown 13824 Mm.3465 NM_013512 ENSMUSG00000024376 Epb41l4a Epb4.1l4|Epb4.1l4a|NBL4 - 18|18 B1 erythrocyte membrane protein band 4.1 like 4a protein-coding 21142 T(2;5)43Ad T43Ad - - reciprocal translocation, Chr 2 and 5, Adler 43 other 100503502 Gm10552 - - 1|1 43.6 cM predicted gene 10552 ncRNA 14406 Mm.5309 NM_008073 ENSMUSG00000020436 Gabrg2 GABAA-R|Gabrg-2|gamma2 - 11 A5|11 24.8 cM gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 protein-coding 100038833 Mm.455099 Gm12568 - - 11|11 B1.1 high mobility group box 1 pseudogene pseudo 100862468 XM_003689185 LOC100862468 - - - NHP2-like protein 1 protein-coding 73046 Mm.29128 NM_028419 ENSMUSG00000021102 Glrx5 - - 12|12 E glutaredoxin 5 protein-coding 140645 Fembm2 - - 14 42.53 cM femoral bone morphometry 2 unknown 102634553 XR_380120 Gm32105 - - 10 A2|10 predicted gene, 32105 ncRNA 100043493 Alms1-ps1 EG665134|Gm4475|Gm7510 - 6 C3|6 ALMS1, centrosome and basal body associated, pseudogene 1 pseudo 52078 D6Ertd87e - - 6 78.68 cM DNA segment, Chr 6, ERATO Doi 87, expressed unknown 108167522 XR_001778518 Gm17023 - - 8 A1.1|8 5.73 cM predicted gene 17023 ncRNA 142687 Mm.138259 NM_080856 ENSMUSG00000021898 Asb14 Asb-14 - 14|14 A3 ankyrin repeat and SOCS box-containing 14 protein-coding 67180 Mm.270382 NM_023311 ENSMUSG00000024487 Yipf5 2610311I19Rik|AA408236|Yip1a - 18|18 B3 Yip1 domain family, member 5 protein-coding 100035367 Etax7 - - - ethanol induced ataxia 7 unknown 75974 Mm.32873 NM_177745 ENSMUSG00000031093 Dock11 5033414A21Rik|8030476J24|Zizimin2|sph238 - X|X A3.3 dedicator of cytokinesis 11 protein-coding 112163677 LOC112163677 - - - Tctex1 domain containing 2 pseudogene pseudo 105243599 XR_880924 LOC105243599 - - - uncharacterized LOC105243599 ncRNA 105246774 XR_878717 Gm42013 - - 5 F|5 predicted gene, 42013 ncRNA 105245564 XR_873687 Gm41006 - - 13 C1|13 predicted gene, 41006 ncRNA 102636967 XR_380158 Gm33892 - - 10 A3|10 predicted gene, 33892 ncRNA 14718 Mm.19039 NM_010324 ENSMUSG00000025190 Got1 AI789014|Got-1|cAspAT|cCAT - 19 C3|19 36.67 cM glutamic-oxaloacetic transaminase 1, soluble protein-coding 668717 Gm9317 EG668717 - 3|3 F3 ribosomal protein L6 pseudogene pseudo 100534306 Gm21022 - - 15|15 F1 glutamate dehydrogenase 1 pseudogene pseudo 100035970 Skts14 - - - skin tumor susceptibility 14 unknown 102466836 NR_106102 ENSMUSG00000098812 Mir7578 Gm27789|mmu-mir-7578 - 2|2 A3 microRNA 7578 ncRNA 52276 Mm.28038 NM_026560 ENSMUSG00000028873 Cdca8 4831429J16Rik|AU044747|BOR|Borealin|D4Ertd421e|DasraB|MESRGP - 4 D2.2|4 57.93 cM cell division cycle associated 8 protein-coding 667286 Gm12189 - - 11|11 B1.2 eukaryotic translation initiation factor 3, subunit I pseudogene pseudo 105246158 XR_876242 Gm41492 - - 16 C3.3|16 predicted gene, 41492 ncRNA 639634 Mm.475611 NM_001128091 ENSMUSG00000091376 Aadacl2 EG639634 - 3|3 D arylacetamide deacetylase like 2 protein-coding 106389 Mm.432078 NM_134111 ENSMUSG00000022838 Eaf2 AW048865|FESTA-L|FESTA-S|Festa|Traits|U19 - 16|16 B3 ELL associated factor 2 protein-coding 53614 Mm.331573 NM_016678 ENSMUSG00000028476 Reck St15|mRECK - 4|4 B1 reversion-inducing-cysteine-rich protein with kazal motifs protein-coding 97895 Mm.315815 NM_175290 ENSMUSG00000032999 Nlrp4f C330026N02Rik|C86045|Nalp-kappa|Nalp4f - 13|13 B3 NLR family, pyrin domain containing 4F protein-coding 21294 T(X;11)38H T38H - - reciprocal translocation, Chr X and 11, Harwell 38 other 52359 Mm.394871 D7Ertd495e - - 7 68.89 cM DNA segment, Chr 7, ERATO Doi 495, expressed unknown 629502 Mm.390446 LOC629502 - - 12|12 A1.3 uncharacterized LOC629502 protein-coding 16194 Mm.2856 NM_010559 ENSMUSG00000027947 Il6ra CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r - 3 F1|3 39.19 cM interleukin 6 receptor, alpha protein-coding 102637940 XR_390589 Gm34628 - - 4 B3|4 predicted gene, 34628 ncRNA 102465708 NR_106087 ENSMUSG00000106323 Mir7228 mmu-mir-7228 - 5|5 G2 microRNA 7228 ncRNA 85183 D16Mit77 - - 16 36.02 cM DNA segment, Chr 16, Massachusetts Institute of Technology 77 unknown 15951 Mm.261270 NM_008329 ENSMUSG00000073489 Ifi204 Ifi16|p204 - 1 H3|1 80.63 cM interferon activated gene 204 protein-coding 100503280 Mm.483559 NM_001251890 Gm38425 - - X A7.3|X predicted gene, 38425 protein-coding 433883 Gm5554 EG433883 - 5|5 B3 predicted gene 5554 pseudo 14548 Mm.377071 NM_010270 ENSMUSG00000029918 Mrps33 AI841153|CGI-139|Gdap3|MRP-S33|PTD003 - 6 B1|6 mitochondrial ribosomal protein S33 protein-coding 791359 Mm.227592 NR_033509 ENSMUSG00000055015 Gm9961 - - 16 A1|16 predicted gene 9961 ncRNA 109280099 LOC109280099 Mm924 - - VISTA enhancer mm924 biological-region 102639999 XR_376067 Gm36180 - - 3 G3|3 predicted gene, 36180 ncRNA 670673 Gm9498 - - X|X A1.1 predicted gene 9498 pseudo 102640370 Gm14409 - - 2|2 99.28 cM predicted gene 14409 protein-coding 105246352 Gm41652 - - 17|17 predicted gene, 41652 ncRNA 387218 NR_029742 ENSMUSG00000065513 Mir26a-1 Mirn26a|Mirn26a-1|miR-26a|mir-26a-1 - 9|9 F3 microRNA 26a-1 ncRNA 217864 Mm.23808 NM_198023 ENSMUSG00000037896 Rcor1 5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071 - 12 F1|12 60.93 cM REST corepressor 1 protein-coding 100418437 Gm19212 - - 9|9 A1 protein kinase, interferon inducible double stranded RNA dependent activator pseudogene pseudo 114269 Manh5 QTL-SH4.1 - - mandible shape 5 unknown 109279974 LOC109279974 Mm622 - - VISTA enhancer mm622 biological-region 21189 T(4;8)Tp(8q8p)36H - - - reciprocal translocation, Chr 4 and 8, Harwell 36 other 234362 Mm.458487 NM_172754 ENSMUSG00000060427 Zfp868 AI449175|AW108241|C530032E20|mszf62 - 8|8 B3.3 zinc finger protein 868 protein-coding 107279 AU014972 - - - expressed sequence AU014972 unknown 20495 Mm.3914 NM_011389 ENSMUSG00000027202 Slc12a1 AI788571|D630042G03Rik|Nkcc2|mBSC1|urehr3 - 2 F1|2 61.23 cM solute carrier family 12, member 1 protein-coding 68867 Mm.29532 NM_175136 ENSMUSG00000039328 Rnf122 1110063C11Rik - 8|8 A3 ring finger protein 122 protein-coding 20174 Mm.34410 NM_011304 ENSMUSG00000003868 Ruvbl2 mp47|p47 - 7|7 B3 RuvB-like protein 2 protein-coding 110922 Nr2e3-rs1 - - - nuclear receptor subfamily 2, group E, member 3, related sequence 1 protein-coding 111828493 NR_153412 Atrip-trex1 - - - Atrip-Trex1 readthrough ncRNA 102636344 Gm33437 - - 18|18 predicted gene, 33437 protein-coding 100418348 Gm19153 - - 13|13 A3.1 growth factor receptor bound protein 2-associated protein 2 pseudogene pseudo 751543 NR_030463 ENSMUSG00000076064 Mir690 Mirn690|mir-690|mmu-mir-690 - 16 B2|16 microRNA 690 ncRNA 75501 Mm.394300 NR_040512 ENSMUSG00000092599 1700010K23Rik - - 16|16 C1.3 RIKEN cDNA 1700010K23 gene ncRNA 623286 Gm6415 EG623286 - 7|7 D3 predicted pseudogene 6415 pseudo 100038731 Gm10753 - - - predicted gene 10753 protein-coding 102640933 XR_865387 Gm42411 - - 1 B|1 predicted gene 42411 ncRNA 100418343 Gm19151 - - X|X A5 tumor necrosis factor, alpha-induced protein 1 (endothelial) pseudogene pseudo 109520 Abhr1 - - - antigen-induced bronchial hyperresponsiveness 1 unknown 100036487 Arigg3 - - - anti-RBC IgG antibodies 3 unknown 214952 Mm.40907 NM_145999 ENSMUSG00000025733 Rhot2 Arht2|Miro2 - 17 A3.3|17 12.93 cM ras homolog family member T2 protein-coding 666659 Gm8219 EG666659 - 12|12 C3 brain protein 44-like pseudogene pseudo 269053 Mm.131677 NM_206973 ENSMUSG00000044724 Gpr152 A930009H15Rik|Gm673 - 19|19 A G protein-coupled receptor 152 protein-coding 319942 Mm.185209 NM_177039 ENSMUSG00000043122 A530016L24Rik Nrac - 12|12 F1 RIKEN cDNA A530016L24 gene protein-coding 17002 Mm.282359 NM_008522 ENSMUSG00000032496 Ltf Csp82|Lf|MMS10R|Ms10r - 9 F2|9 60.79 cM lactotransferrin protein-coding 677260 Gm13902 - - 2|2 E3 high mobility group box 2 pseudogene pseudo 668184 Gm9028 EG668184 - 18|18 E3 predicted gene 9028 pseudo 100316778 NR_035503 ENSMUSG00000087993 Mir1982 mir-1982|mmu-mir-1982 - 10 C1|10 39.72 cM microRNA 1982 ncRNA 75301 Mm.108650 NR_045358 ENSMUSG00000111924 4930556N09Rik - - 10|10 C3 RIKEN cDNA 4930556N09 gene ncRNA 78232 Mm.290070 NM_030057 ENSMUSG00000020993 Trappc6b 5830498C14Rik|C79212 - 12|12 C1 trafficking protein particle complex 6B protein-coding 14057 Mm.134191 NM_027324 ENSMUSG00000021474 Sfxn1 2810002O05Rik|A930015P12Rik|f - 13 B1|13 28.4 cM sideroflexin 1 protein-coding 224523 Mm.188855 NR_045290 ENSMUSG00000097350 4732491K20Rik - - 17|17 A1 RIKEN cDNA 4732491K20 gene ncRNA 102638241 XR_388954 Gm34850 - - 11 D|11 predicted gene, 34850 ncRNA 214944 Mm.32968 NM_178061 ENSMUSG00000073910 Mob3b 8430436F23Rik|A430018A01Rik|Mobkl2b - 4 A5|4 16.86 cM MOB kinase activator 3B protein-coding 66128 Mm.306173 NM_025369 ENSMUSG00000061474 Mrps36 1110018B13Rik|S36mt - 13|13 D1 mitochondrial ribosomal protein S36 protein-coding 105246398 XR_877301 Gm41690 - - 18 B1|18 predicted gene, 41690 ncRNA 105245961 Gm41332 - - 15|15 predicted gene, 41332 ncRNA 102636118 Mm.403334 XR_001778865 Gm33280 - - 1 B|1 predicted gene, 33280 ncRNA 258258 Mm.377397 NM_207151 ENSMUSG00000074952 Olfr1308 MOR245-22 - 2|2 E3 olfactory receptor 1308 protein-coding 212084 Gm4775 EG212084 - 14|14 E2.3 predicted gene 4775 pseudo 404307 Mm.377381 NM_207673 Olfr100 GA_x5J8B7TUCE2-427-5|GA_x5J8B7W5KGR-1200441-1200915|GA_x6K02T2PSCP-1740421-1739495 - 17|17 olfactory receptor 100 protein-coding 258164 Olfr505-ps1 MOR204-24P - 7|7 E3 olfactory receptor 505, pseudogene 1 pseudo 21229 T(6;10)18Ad T18Ad - - reciprocal translocation, Chr 6 and 10, Adler 18 other 102637185 XR_378360 Gm34062 - - 7 E1|7 predicted gene, 34062 ncRNA 100035307 Sxbq4 Sxb-4 - 10 16.53 cM SGC/Knj cross B6 QTL 4 unknown 12751 Mm.20837 NM_009906 ENSMUSG00000030894 Tpp1 Cln2|LPIC|TPP-1|TPP-I - 7 E3|7 55.97 cM tripeptidyl peptidase I protein-coding 114349 Skl1 - - 1 38.55 cM skeletal size (tail length) 1 unknown 66261 Mm.46325 NM_025453 ENSMUSG00000026149 Tm4sf20 1810018L02Rik - 1|1 C5 transmembrane 4 L six family member 20 protein-coding 100035472 Bmc1 - - - bone mineral content 1 unknown 227377 Mm.243091 NM_145519 ENSMUSG00000034066 Farp2 AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793 - 1|1 D FERM, RhoGEF and pleckstrin domain protein 2 protein-coding 73289 1700031C06Rik - - 14|14 RIKEN cDNA 1700031C06 gene unknown 12700 Mm.4592 NM_009895 ENSMUSG00000032578 Cish CIS-1|CIS1|Cis|F17|F23|SOCS - 9 F1|9 57.99 cM cytokine inducible SH2-containing protein protein-coding 100035474 Ftm2 - - - total body fat tissue mass 2 unknown 100038349 Mm.483455 Gm10862 - - - predicted gene 10862 unknown 242285 Mm.98096 NM_181989 ENSMUSG00000028236 Sdr16c5 Rdhe2|Scdr9 - 4|4 A1 short chain dehydrogenase/reductase family 16C, member 5 protein-coding 100416876 Gm18297 - - X|X C1 deleted in liver cancer 1 pseudogene pseudo 258697 Mm.223132 NM_146702 ENSMUSG00000046272 Olfr1444 MOR202-4 - 19|19 A olfactory receptor 1444 protein-coding 68558 Mm.209642 NM_023472 ENSMUSG00000021661 Ankra2 1110004M18Rik|Ankra - 13|13 D1 ankyrin repeat, family A (RFXANK-like), 2 protein-coding 108168498 XR_001782880 Gm46695 - - X A3.1|X predicted gene, 46695 ncRNA 70073 Mm.45306 NM_027306 ENSMUSG00000054117 Zdhhc25 1700030J15Rik - 15|15 E3 zinc finger, DHHC domain containing 25 protein-coding 105243374 XR_001779120 LOC105243374 - - 9 A4 uncharacterized LOC105243374 ncRNA 80979 Mm.160370 NM_030727 ENSMUSG00000029015 Slc26a5 Pres|prestin - 5 A3|5 9.97 cM solute carrier family 26, member 5 protein-coding 108169033 XR_001784828 Gm46905 - - 5 B1|5 predicted gene, 46905 ncRNA 108167995 XM_017315316 Gm46345 - - 12 A2|12 predicted gene, 46345 protein-coding 20770 Mm.1280 NM_009267 ENSMUSG00000036925 Mucl2 Spt-1|Spt1 - 15 F3|15 mucin-like 2 protein-coding 210529 Mm.260039 NM_201638 ENSMUSG00000028114 Mettl14 G430022H21Rik|mKIAA1627 - 3|3 G1 methyltransferase like 14 protein-coding 102636870 Gm27167 - - 8|8 predicted gene 27167 ncRNA 68137 Mm.298433 NM_133950 ENSMUSG00000002778 Kdelr1 8030486F04Rik|AW215843|Erd2.1 - 7|7 B3 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 protein-coding 29811 Mm.26722 NM_013864 ENSMUSG00000004558 Ndrg2 AI182517|AU040374|Ndr2|SYLD - 14|14 C1 N-myc downstream regulated gene 2 protein-coding 100040818 Gm13682 - - 2|2 D predicted gene 13682 pseudo 382919 Gm17740 - - 14|14 D2 PR domain containing 4 pseudogene pseudo 102392594 LOC102392594 - - X E1 barrier to autointegration factor 1 pseudogene pseudo 76405 Mm.165697 NM_029597 ENSMUSG00000031809 1700018B08Rik 1700084O22Rik - 8|8 E1 RIKEN cDNA 1700018B08 gene protein-coding 99586 Mm.27907 NM_170778 ENSMUSG00000033308 Dpyd AI315208|DHPDHase|DPD|E330028L06Rik - 3|3 G1 dihydropyrimidine dehydrogenase protein-coding 105245319 XR_872152 Gm40794 - - 10 D2|10 predicted gene, 40794 ncRNA 231830 Mm.240510 NM_174850 ENSMUSG00000036718 Micall2 A930021H16Rik|JRAB|MICAL-L2|mFLJ00139 - 5|5 G2 MICAL-like 2 protein-coding 105247199 XR_881551 Gm42338 - - 4 E1|4 predicted gene, 42338 ncRNA 102634721 Gm32239 - - Y|Y tRNA methyltransferase 112 homolog pseudo 140498 Mm.444643 NM_080468 ENSMUSG00000053368 Rxfp2 Gpr106|Great|Lgr8 - 5 G3|5 89.23 cM relaxin/insulin-like family peptide receptor 2 protein-coding 64380 Mm.440715 NM_029499 ENSMUSG00000024675 Ms4a4c 5830413L19Rik|AI449185|Ms4a9 - 19|19 A membrane-spanning 4-domains, subfamily A, member 4C protein-coding 665644 Gm7727 EG665644 - 12|12 C1 zinc finger, MYND domain containing 19 pseudogene pseudo 53004 B6SP6 - - - DNA segment, B6SP6 unknown 668629 Gm13767 - - 2|2 E1 protein tyrosine phosphatase, receptor type, J pseudogene pseudo 109741 H3 H-3 - - histocompatibility 3 protein-coding 104776 Mm.247510 NM_134042 ENSMUSG00000021238 Aldh6a1 1110038I05Rik|Mmsdh - 12 D1|12 39.21 cM aldehyde dehydrogenase family 6, subfamily A1 protein-coding 102635987 XR_867013 Gm33185 - - 2 H3|2 predicted gene, 33185 ncRNA 75262 Mm.84630 4930550I04Rik - - 2|2 RIKEN cDNA 4930550I04 gene protein-coding 319949 A130009I22Rik - - 8|8 RIKEN cDNA A130009I22 gene protein-coding 109897 Cypr2 - - - cytokine production 2 protein-coding 192159 Mm.3757 NM_138659 ENSMUSG00000020850 Prpf8 AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l - 11 B5|11 45.92 cM pre-mRNA processing factor 8 protein-coding 77526 C030015D21Rik - - 11|11 RIKEN cDNA C030015D21 gene protein-coding 27494 Mm.100068 NM_153319 ENSMUSG00000041688 Amot CAG-2|D0Kist1|Sii6 - X|X F2 angiomotin protein-coding 106804093 LOC106804093 - - 6 F1 nonconserved acetylation island sequence M73 enhancer biological-region 102636259 Gm33375 - - 10|10 predicted gene, 33375 protein-coding 269113 Mm.275289 NM_183392 ENSMUSG00000034826 Nup54 3110079L04Rik|54kDa - 5|5 E2 nucleoporin 54 protein-coding 12707 Ck-ps2 - - - creatine kinase pseudogene 2 pseudo 29816 Mm.149954 NM_145070 ENSMUSG00000000915 Hip1r AA410023|mKIAA0655 - 5|5 F huntingtin interacting protein 1 related protein-coding 622425 Gm6321 EG622425 - 3|3 A1 eukaryotic translation initiation factor 3, subunit M pseudogene pseudo 102637313 XR_379512 Gm34157 - - 9 B|9 predicted gene, 34157 ncRNA 622655 Rpsa-ps2 EG622655|Gm6339 - 10|10 D3 ribosomal protein SA, pseudogene 2 pseudo 12943 Mm.308500 NM_009961 ENSMUSG00000007440 Pcdha10 Cnr3|Cnr8|Crnr3|Crnr8|Pcdha14 - 18|18 B2-B3 protocadherin alpha 10 protein-coding 359922 DXMgc88 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 88 unknown 320281 C230085J04Rik - - 1|1 RIKEN cDNA C230085J04 gene protein-coding 102636631 XM_006523118 Gm38490 - - 16 C3.3|16 predicted gene, 38490 protein-coding 109253 Mm.393249 9430041P20Rik - - 18|18 RIKEN cDNA 9430041P20 gene protein-coding 668423 Mm.390481 Ighv4-2 IGH@|Igh - 12|12 F1 immunoglobulin heavy variable V4-2 pseudo 114811 Bwtq5 - - - body weight QTL 5 unknown 102636745 Mm.362217 XR_001782809 Gm33733 - - X A1.1|X predicted gene, 33733 ncRNA 105244921 XR_872829 Gm40443 - - 12 C3|12 predicted gene, 40443 ncRNA 14425 Mm.439760 NM_015736 ENSMUSG00000026994 Galnt3 - - 2|2 C1.3 polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 67883 Mm.387202 NM_026430 ENSMUSG00000057363 Uxs1 1600025I13Rik|AI451869|AI649125|AW550562 - 1|1 C1.1 UDP-glucuronate decarboxylase 1 protein-coding 85050 DXMit52 - - X 8.37 cM DNA segment, Chr X, Massachusetts Institute of Technology 52 unknown 61400 D5Mit157 - - 5 48.5 cM DNA segment, Chr 5, Massachusetts Institute of Technology 157 unknown 72033 Mm.218409 NM_001081229 ENSMUSG00000027806 Tsc22d2 1810043J12Rik|5530402M19Rik - 3|3 D TSC22 domain family, member 2 protein-coding 628053 Mm.439630 NM_001081476 Gm14725 - - X A7.2|X predicted gene 14725 protein-coding 108167952 XM_017315284 LOC108167952 - - 12 A1.1 uncharacterized LOC108167952 protein-coding 100040900 Gm3030 - - 14|14 A1 predicted gene 3030 pseudo 627395 Gm6751 EG627395 - 17|17 E5 actin, gamma, cytoplasmic 1 pseudogene pseudo 100035556 Fibrs3 - - - fibrosarcoma susceptibility 3 unknown 74971 Mm.410816 NR_040627 ENSMUSG00000092578 4930488B22Rik - - 1|1 H5 RIKEN cDNA 4930488B22 gene ncRNA 108168558 XM_017318760 ENSMUSG00000100485 LOC108168558 - - Y C1 X-linked lymphocyte-regulated protein PM1-like protein-coding 99234 AU043555 - - - expressed sequence AU043555 unknown 668218 Mm.451225 NM_001270537 ENSMUSG00000098112 Bin2 - - 15|15 F1 bridging integrator 2 protein-coding 100862336 Gm21654 - - Y|Y predicted gene, 21654 protein-coding 71728 Mm.312650 NM_027886 ENSMUSG00000026213 Stk11ip 1200014D22Rik|BB131189|LIP1|LKB1IP - 1|1 C4 serine/threonine kinase 11 interacting protein protein-coding 102467555 n-TLcag5 n-Tl17 - 8 C5|8 nuclear encoded tRNA leucine 5 (anticodon CAG) tRNA 102634210 XR_390538 Gm31850 - - 4 B1|4 predicted gene, 31850 ncRNA 102638814 XR_001782171 Gm35290 - - 17 A3.3|17 predicted gene, 35290 ncRNA 328373 A530028O18 - - 14|14 A3 uncharacterized protein A530028O18 protein-coding 100417952 Gm15897 - - 16|16 A1 tyrosine-protein kinase SgK223 pseudogene pseudo 108443 Xmmv68 Xmmv-68|Xp-27 - - xenotropic-MCF leukemia virus 68 other 140703 Mm.840 NM_080595 ENSMUSG00000034164 Emid1 AW122071|CO-5|Emu1 - 11|11 A1 EMI domain containing 1 protein-coding 102640556 XR_390305 Gm11009 - - 2 H4|2 98.48 cM predicted gene 11009 ncRNA 668982 Gm14473 - - X|X A1.1 predicted gene 14473 pseudo 100041110 Gm15016 - - X|X F1 predicted gene 15016 pseudo 100036195 Pbbcp2 - - - peripheral blood B cell percentage 2 unknown 76380 Mm.344071 NM_029586 ENSMUSG00000020728 Cep112 1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco - 11|11 E1 centrosomal protein 112 protein-coding 27503 222B5S - - - DNA segment, 222B5S unknown 624180 Gm6478 EG624180 - 13|13 B3 predicted pseudogene 6478 pseudo 17121 Mm.20350 NM_016662 ENSMUSG00000021485 Mxd3 4631412E13Rik|Mad3|bHLHc13 - 13 B1|13 29.8 cM Max dimerization protein 3 protein-coding 100042470 Trav3d-2 Gm3860|Trav3d-2p - 14 C2|14 T cell receptor alpha variable 3D-2 other 102465228 NR_105848 ENSMUSG00000098984 Mir6420 Gm28007|mmu-mir-6420 - 17|17 E1.1 microRNA 6420 ncRNA 73624 Mm.67392 NR_045185 ENSMUSG00000086080 1700123O12Rik - - 4|4 A1 RIKEN cDNA 1700123O12 gene ncRNA 17830 Mm.200411 NM_008644 ENSMUSG00000064156 Prol1 Muc10 - 5|5 E1 proline rich, lacrimal 1 protein-coding 100416409 Gm18101 - - 9|9 F4 ring finger protein 5 pseudogene pseudo 114545 Dice2 - - 7 71.55 cM determination of interleukin 4 commitment 2 unknown 17243 Mdk-ps1 Mak-rs1 - 11 E1|11 66.39 cM midkine pseudogene 1 pseudo 319233 Mm.445791 8030474H12Rik - - 9|9 RIKEN cDNA 8030474H12 gene protein-coding 64655 Mm.17949 NM_025485 ENSMUSG00000032459 Mrps22 3100002P07Rik|Rpms22 - 9|9 E3.3 mitochondrial ribosomal protein S22 protein-coding 100418459 Gm19225 - - 1|1 B regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 pseudogene pseudo 319960 Mm.386996 NR_015574 ENSMUSG00000074136 4930513N10Rik - - 8|8 D1 RIKEN cDNA 4930513N10 gene ncRNA 243369 Mm.25039 NM_173428 ENSMUSG00000029797 Sspo C79529|Scospondin - 6|6 B2.3 SCO-spondin protein-coding 100042179 Gm9803 - - 10|10 B2 presequence translocase-asssociated motor 16 homolog pseudogene pseudo 665890 Gm7842 EG665890 - 10|10 C1 L-2-hydroxyglutarate dehydrogenase pseudogene pseudo 102636881 XR_378869 Gm33831 Gm45348 - 8 A4|8 predicted gene, 33831 ncRNA 100503836 Gm19918 - - 1|1 67.71 cM predicted gene, 19918 ncRNA 56847 Mm.140988 NM_053080 ENSMUSG00000015134 Aldh1a3 ALDH6|RALDH3|V1 - 7|7 C aldehyde dehydrogenase family 1, subfamily A3 protein-coding 252876 Mm.86090 NM_026250 ENSMUSG00000026333 Gin1 4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2 - 1|1 D gypsy retrotransposon integrase 1 protein-coding 102467571 n-TKctt27 n-Tk27 - 11 B3|11 nuclear encoded tRNA lysine 27 (anticodon TTT) tRNA 606516 Gm6051 EG606516|Gabarapl2-ps5_758.1 - 5|5 C3.3 GABA(A) receptor-associated protein-like 2 pseudogene 5_758.1 pseudo 140626 T(2;10)67Gso 67Gso|gso76 - - reciprocal translocation, Chr 2 and 10, Generoso 67 other 18195 Mm.260117 NM_008740 ENSMUSG00000034187 Nsf AI316878|AU020090|AU067812|SKD2 - 11 E1|11 67.54 cM N-ethylmaleimide sensitive fusion protein protein-coding 100041076 XM_011244857 ENSMUSG00000090764 Gm3127 - - 14 A1|14 predicted gene 3127 protein-coding 100417671 Gm18752 - - 1|1 H3 pyrin and HIN domain family, member 1 pseudogene pseudo 101056174 Gm28312 - - Y|Y predicted gene 28312 protein-coding 100041370 Gm11387 - - 13|13 A3.3 predicted gene 11387 pseudo 215208 Gm4790 EG215208 - 7|7 B3 predicted gene 4790 protein-coding 102633223 XR_387811 Gm31105 - - 8 C2|8 predicted gene, 31105 ncRNA 17347 Mm.42126 NM_021462 ENSMUSG00000020190 Mknk2 2010016G11Rik|Gprk7|Mnk2 - 10|10 C1 MAP kinase-interacting serine/threonine kinase 2 protein-coding 105246172 XR_876319 Gm41506 - - 17 A3.3|17 predicted gene, 41506 ncRNA 196595 Bomd4 - - 7 15.42 cM bone mineral density 4 unknown 12957 Mm.22830 NM_009965 ENSMUSG00000000724 Cryba1 BA3/A1|Cryb - 11 B5|11 46.74 cM crystallin, beta A1 protein-coding 100035528 Tshp11 QTL-TSH12.1 - - tooth shape 11 unknown 110695 Mm.30250 NM_138600 ENSMUSG00000053644 Aldh7a1 Atq1|D18Wsu181e - 18 D3|18 30.55 cM aldehyde dehydrogenase family 7, member A1 protein-coding 93881 Mm.115996 NM_053135 ENSMUSG00000045657 Pcdhb10 Pcdhb5D|PcdhbJ - 18|18 B3 protocadherin beta 10 protein-coding 77198 Mm.107617 NR_131070 ENSMUSG00000112210 4930407I19Rik - - 10|10 B5.1 RIKEN cDNA 4930407I19 gene ncRNA 243219 Mm.160131 NM_172884 ENSMUSG00000051339 2900026A02Rik 8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671 - 5|5 F RIKEN cDNA 2900026A02 gene protein-coding 52372 Mm.282851 NM_001167937 ENSMUSG00000090891 D6Ertd527e AU043841 - 6 D1|6 37.9 cM DNA segment, Chr 6, ERATO Doi 527, expressed protein-coding 14401 Mm.338723 NM_008070 ENSMUSG00000007653 Gabrb2 AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2 - 11 A5|11 25.08 cM gamma-aminobutyric acid (GABA) A receptor, subunit beta 2 protein-coding 100151690 Gm17798 - - 9|9 A5.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 27743 D2Dcr22 - - - DNA segment, Chr 2, Derry C. Roopenian 22 unknown 105243678 Gm39509 - - X|X predicted gene, 39509 ncRNA 112163583 AA416331 - - - expressed sequence AA416331 protein-coding 100861488 NR_046140 ENSMUSG00000094916 Gm26391 Rn5s17 - 8 E1|8 predicted gene, 26391 rRNA 664869 Gm7380 EG664869 - 7|7 F4 ribosomal protein L24 pseudogene pseudo 100041915 Mm.390608 Vmn2r-ps104 - - 13|13 B3 vomeronasal 2, receptor, pseudogene 104 pseudo 19369 Mm.458004 NM_009017 Raet1b RAE-1beta - - retinoic acid early transcript beta protein-coding 108168824 LOC108168824 - - 2 H4 60S ribosomal protein L27a pseudogene pseudo 68611 Mm.273102 NM_024227 ENSMUSG00000024181 Mrpl28 1110015G04Rik|L28mt|MAAT1|MRP-L28|p15 - 17|17 A3.3 mitochondrial ribosomal protein L28 protein-coding 640264 Gm7290 EG640264 - 7|7 F5 ribosomal protein L13 pseudogene pseudo 102636668 XR_380153 Gm33671 - - 10 A3|10 predicted gene, 33671 ncRNA 70808 Mm.427103 NR_027985 ENSMUSG00000048106 4632415L05Rik AI662792 - 3|3 A2 RRS1 ribosome biogenesis regulator homolog pseudogene pseudo 102640477 XR_001783220 Gm14412 - - 2 H4|2 99.31 cM predicted gene 14412 pseudo 545554 Mm.267664 NM_001024851 ENSMUSG00000049097 Ankrd34a AW060394|Ankrd34 - 3|3 F2.1 ankyrin repeat domain 34A protein-coding 11539 Mm.298908 NM_009629 ENSMUSG00000042429 Adora1 A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri - 1|1 E4 adenosine A1 receptor protein-coding 14979 Mm.275452 NM_013543 ENSMUSG00000073422 H2-Ke6 D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2 - 17 B1|17 17.98 cM H2-K region expressed gene 6 protein-coding 78326 2700078K13Rik - - 7|7 RIKEN cDNA 2700078K13 gene protein-coding 100502670 Mm.367813 XR_871043 Gm16010 - - 9 E3.3|9 50.8 cM predicted gene 16010 unknown 108168776 XR_001783406 Gm46753 - - 2 E1|2 predicted gene, 46753 ncRNA 59054 Mm.143810 NM_021556 ENSMUSG00000021731 Mrps30 2610020A16Rik|AA968347|PAP|Pdcd9 - 13|13 D2.3 mitochondrial ribosomal protein S30 protein-coding 100312476 Mm.480293 NM_001167539 ENSMUSG00000091539 Vmn1r238 - - 18 A1|18 2.04 cM vomeronasal 1 receptor, 238 protein-coding 237891 Mm.340523 NM_001013759 ENSMUSG00000020686 Gas2l2 - - 11|11 C growth arrest-specific 2 like 2 protein-coding 102636692 Gm33692 - - 5|5 predicted gene, 33692 ncRNA 100039757 Gm10153 - - 7|7 F5 predicted gene 10153 protein-coding 102640166 XR_377278 Gm36299 - - 5 G3|5 predicted gene, 36299 ncRNA 105245619 XR_873896 Gm41049 - - 13 D1|13 predicted gene, 41049 ncRNA 108590 Iap5rb9 - - - intracisternal A-type particle, U5 region, SINE repeat b-9 other 105244228 XR_866528 Gm39875 - - 2 E1|2 predicted gene, 39875 ncRNA 320740 D830012I16Rik - - 4|4 RIKEN cDNA D830012I16 gene protein-coding 104093 Ir4 Ir-4 - - immune response 4 unknown 19299 Mm.399042 NM_008991 ENSMUSG00000028127 Abcd3 AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1 - 3 G1|3 52.94 cM ATP-binding cassette, sub-family D (ALD), member 3 protein-coding 102635678 XR_390457 Gm32955 - - 4 A5|4 predicted gene, 32955 ncRNA 102638651 XR_874481 Gm35164 - - 14 A3|14 predicted gene, 35164 ncRNA 111524 Tcra-V1 - - - T cell receptor alpha, variable 1 other 66043 Mm.278560 NM_025313 ENSMUSG00000003072 Atp5d 0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518 - 10|10 C1 ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit protein-coding 102467006 NR_106187 ENSMUSG00000099142 Mir8108 Gm27484|mmu-mir-8108 - 8|8 A2 microRNA 8108 ncRNA 633606 Gm7118 EG633606 - 5 F|5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 67365 Mm.158150 NM_026108 ENSMUSG00000048875 Pudp 1700121L12Rik|GS1|Hdhd1|Hdhd1a - 18|18 D1 pseudouridine 5-phosphatase protein-coding 229731 Mm.33574 NM_172685 ENSMUSG00000040322 Slc25a24 2610016M12Rik - 3|3 F3 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24 protein-coding 15464 Mm.39968 NM_010473 ENSMUSG00000038239 Hrc - - 7 B3|7 29.26 cM histidine rich calcium binding protein protein-coding 108168240 XR_001781660 Gm46515 - - 15 B3.1|15 predicted gene, 46515 ncRNA 100034869 Pltpq1 - - 3 32.25 cM phospholipid transfer protein activity QTL 1 unknown 12049 Mm.25988 NM_013479 ENSMUSG00000032191 Bcl2l10 AA420380|AU023065|Boo|C85687|Diva - 9|9 D Bcl2-like 10 protein-coding 14836 Mm.129 NM_010351 ENSMUSG00000021095 Gsc - - 12 E|12 54.32 cM goosecoid homeobox protein-coding 238199 Gm4930 EG238199 - 12|12 C1 Smad nuclear interacting protein 1 pseudogene pseudo 22324 Mm.248172 NM_011691 ENSMUSG00000034116 Vav1 Vav|vav-T - 17 D|17 29.76 cM vav 1 oncogene protein-coding 50770 Mm.257837 NM_015804 ENSMUSG00000031441 Atp11a 4930558F19Rik|AU040868|Atpc1h|Ih - 8|8 A1.1 ATPase, class VI, type 11A protein-coding 75221 Mm.234769 NM_133803 ENSMUSG00000063904 Dpp3 4930533O14Rik|C86324|DPP III - 19|19 A dipeptidylpeptidase 3 protein-coding 100040227 Gm2672 - - 19|19 A predicted gene 2672 pseudo 102635188 XR_388234 Gm32590 - - 8 E2|8 predicted gene, 32590 ncRNA 117207 l9Rl6 pl-6 - - lethal, Chr 9, Russell 6 protein-coding 353148 Mm.377887 NM_181275 ENSMUSG00000047102 Tas2r139 Tas2r39|mt2r34 - 6|6 B2.1 taste receptor, type 2, member 139 protein-coding 98798 AA516848 - - - expressed sequence AA516848 unknown 20829 Ssm1 Ssm-1 - - strain specific modifier of transgene methylation 1 protein-coding 72029 Mm.240325 NM_028065 ENSMUSG00000023973 Cnpy3 1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5 - 17|17 C canopy FGF signaling regulator 3 protein-coding 68164 Mm.443664 A430106A12Rik - - 11|11 RIKEN cDNA A430106A12 gene unknown 109279932 LOC109279932 Mm253 - - VISTA enhancer mm253 biological-region 54611 Mm.103728 NM_018779 ENSMUSG00000041741 Pde3a A930022O17Rik|C87899 - 6|6 G2 phosphodiesterase 3A, cGMP inhibited protein-coding 74862 Mm.484034 4930447F04Rik - - X|X A7.1 RIKEN cDNA 4930447F04 gene unknown 77430 Mm.208004 9430081H08Rik - - 9|9 RIKEN cDNA 9430081H08 gene protein-coding 107252 Mm.443640 AI843588 - - - expressed sequence AI843588 protein-coding 73270 Mm.296923 NR_045363 ENSMUSG00000097709 1700024F13Rik - - 13 A1|13 RIKEN cDNA 1700024F13 gene ncRNA 28095 DYzEms5 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 5 unknown 15487 Mm.5109 NM_008291 ENSMUSG00000033122 Hsd17b3 - - 13|13 B3 hydroxysteroid (17-beta) dehydrogenase 3 protein-coding 100038489 Mm.58847 NM_001297554 ENSMUSG00000079042 Apela Ela|Elabela|Ende|Gm10664 - 8 B3.1|8 apelin receptor early endogenous ligand protein-coding 13305 Del(3)54H Del54H - - deletion, Chr 3, Harwell 54 other 732533 Gt(pU21)103Imeg Ayu21-103|GtAyu21-103 - - gene trap 103, Institute of Molecular Embryology and Genetics unknown 545378 Mm.379942 NM_001033499 ENSMUSG00000073494 Sh2d1b2 EAT-2B|Eat2b|Ert|Sh2d1c - 1|1 H3 SH2 domain containing 1B2 protein-coding 76605 Mm.376446 1700042O13Rik - - 3|3 RIKEN cDNA 1700042O13 gene ncRNA 225187 Mm.53865 NM_001190371 ENSMUSG00000057766 Ankrd29 G630054C21|G630054C21Rik|Gm95 - 18|18 A1 ankyrin repeat domain 29 protein-coding 353047 Mm.18556 NM_183034 ENSMUSG00000034247 Plekhm1 AP162|B2|BC038943|D330036J23Rik - 11|11 E1 pleckstrin homology domain containing, family M (with RUN domain) member 1 protein-coding 62475 D10Mit298 - - 10 2.78 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 298 unknown 606731 Gm11700 Ppia-ps2_1789.1 - 2|2 G1 peptidylprolyl isomerase A pseudogene 2_1789.1 pseudo 52009 Mm.371601 NM_198937 ENSMUSG00000024165 Jpt2 2810430B18Rik|AL022629|C16orf34|D17Ertd441e|Hn1l - 17 A3.3|17 12.53 cM Jupiter microtubule associated homolog 2 protein-coding 75773 Mm.159566 NM_029428 ENSMUSG00000024266 Adad2 4930403J07Rik - 8|8 E1 adenosine deaminase domain containing 2 protein-coding 105244123 XR_866139 Gm39792 - - 2 B|2 predicted gene, 39792 ncRNA 100417573 Gm14065 - - 2|2 F3 mitochondrial ribosomal protein L47 pseudogene pseudo 108168790 XR_001783450 Gm46762 - - 2 F1|2 predicted gene, 46762 ncRNA 100418447 Gm13316 - - 2|2 A2 TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor pseudogene pseudo 78416 Mm.103835 NM_030098 ENSMUSG00000021880 Rnase6 9530043P15Rik|BB119466 - 14|14 C1 ribonuclease, RNase A family, 6 protein-coding 435785 Mup-ps23 Gm12574 - 4|4 B3 major urinary protein, pseudogene 23 pseudo 665218 Gm11927 - - 4|4 A5 predicted gene 11927 pseudo 667940 Igkv3-5 Gm16774|IgK21-5|Igk-V21-5 - 6|6 C1 immunoglobulin kappa chain variable 3-5 other 258083 Olfr1025-ps1 MOR196-5P|MOR196-6_p - 2|2 D olfactory receptor 1025, pseudogene 1 pseudo 17933 Mm.253067 NM_008666 ENSMUSG00000061911 Myt1l 2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106 - 12 A2|12 11.86 cM myelin transcription factor 1-like protein-coding 77336 9430030N17Rik - - 19|19 RIKEN cDNA 9430030N17 gene protein-coding 67955 Mm.18972 NM_026474 ENSMUSG00000022024 Sugt1 2410174K12Rik|SGT1 - 14|14 D3 SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) protein-coding 360057 D17Jcs61 - - - DNA segment, Chr 17, John C. Schimenti 61 unknown 72505 Mm.482437 2610319H10Rik - - 8|8 RIKEN cDNA 2610319H10 gene protein-coding 105243636 Mm.151218 XR_001780389 Gm11754 - - 11 E2|11 83.34 cM predicted gene 11754 ncRNA 52048 D6Ggc3e - - - DNA segment, Chr 6, G. Consalez 3, expressed unknown 75387 Mm.332616 NM_133760 ENSMUSG00000029524 Sirt4 4930596O17Rik - 5|5 F sirtuin 4 protein-coding 18516 Mm.239941 NM_016768 ENSMUSG00000038718 Pbx3 - - 2 B|2 22.84 cM pre B cell leukemia homeobox 3 protein-coding 70931 4921534E14Rik - - 5|5 RIKEN cDNA 4921534E14 gene protein-coding 102634099 XR_390843 Gm31762 - - 4 D3|4 predicted gene, 31762 ncRNA 75013 Mm.336332 NM_029142 ENSMUSG00000055555 4930502E18Rik Ct55 - X|X A5 RIKEN cDNA 4930502E18 gene protein-coding 102634249 XR_375779 Gm31879 - - 3 F1|3 predicted gene, 31879 ncRNA 110120512 LOC110120512 - - - VISTA enhancer mm1102 biological-region 61738 D4Mit281 - - 4 63.43 cM DNA segment, Chr 4, Massachusetts Institute of Technology 281 unknown 408064 Mm.172429 NR_015455 BC064078 - - 6 F3|6 cDNA sequence BC064078 ncRNA 18245 Mm.398119 NM_008753 ENSMUSG00000035242 Oaz1 AZ-1|AZ1|Antizyme|ODC-Az|Oaz - 10 C1|10 39.72 cM ornithine decarboxylase antizyme 1 protein-coding 105193 Mm.25593 NM_175340 ENSMUSG00000044231 Nhlrc1 AI505271|B230309E09Rik|EPM2B - 13|13 A5 NHL repeat containing 1 protein-coding 667548 Gm8696 EG667548 - 17|17 B1 NHP2 non-histone chromosome protein 2-like 1 pseudogene pseudo 493004 Orgwq1 - - 1 58.18 cM organ weight QTL 1 unknown 100125262 Trbc1 Gm16802|Tcrb-C1 - 6 19.69 cM|6 B1 T cell receptor beta, constant region 1 other 77864 Mm.191894 NM_001005341 ENSMUSG00000018427 Ypel2 6430570G24|E130113K08Rik - 11|11 C yippee like 2 protein-coding 102633308 LOC102633308 - - 6 B2.3 40S ribosomal protein S6 pseudogene pseudo 67501 Mm.258985 NM_026202 ENSMUSG00000038127 Ccdc50 C3orf6 - 16 B2|16 18.98 cM coiled-coil domain containing 50 protein-coding 63872 Mm.23310 NM_022409 ENSMUSG00000011267 Zfp296 2210018A16Rik|Znf296 - 7|7 A3 zinc finger protein 296 protein-coding 231396 Mm.439851 NM_001029867 ENSMUSG00000070704 Ugt2b36 - - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide B36 protein-coding 105246033 XR_875647 Gm41395 - - 15 F1|15 predicted gene, 41395 ncRNA 245026 Mm.482507 NM_172927 ENSMUSG00000043719 Col6a6 E330019B14|E330026B02Rik - 9|9 F1 collagen, type VI, alpha 6 protein-coding 96926 C86530 - - - expressed sequence C86530 unknown 58887 Mm.219183 NM_175099 ENSMUSG00000052751 Repin1 AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464 - 6|6 B2.3 replication initiator 1 protein-coding 436135 Mm.480278 NM_001166716 ENSMUSG00000091638 Vmn1r113 EG436135|Gm5748 - 7|7 A3 vomeronasal 1 receptor 113 protein-coding 26921 Mm.491139 NM_008696 ENSMUSG00000026074 Map4k4 9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik - 1|1 B mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 100216530 Mm.453052 NR_028566 ENSMUSG00000064899 Snord118 MBI-34 - 11 B3|11 small nucleolar RNA, C/D box 118 snoRNA 101420 Mm.446666 BB178967 - - - expressed sequence BB178967 protein-coding 111517 Pmv9 Pmv-9 - - polytropic murine leukemia virus 9 other 68480 Mm.3336 NM_026738 ENSMUSG00000037960 Card19 1110007C09Rik|AI851695|Bincard - 13|13 A5 caspase recruitment domain family, member 19 protein-coding 15438 Mm.26544 NM_013555 ENSMUSG00000043342 Hoxd9 Hox-4.4|Hox-5.2 - 2 C3|2 44.13 cM homeobox D9 protein-coding 112334 Lore3 - - - loss of righting induced by ethanol 3 unknown 104167 Pd - - - pyrimidine degrading unknown 100035106 Cinda3 - - 4 70.02 cM cytokine induced activation 3 unknown 13483 Mm.42078 NM_010075 ENSMUSG00000061576 Dpp6 B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw - 5 B1|5 12.92 cM dipeptidylpeptidase 6 protein-coding 74492 Mm.159223 NM_028974 ENSMUSG00000054978 Kbtbd13 5430433E21Rik - 9|9 C kelch repeat and BTB (POZ) domain containing 13 protein-coding 56389 Mm.153061 NM_019829 ENSMUSG00000010110 Stx5a 0610031F24Rik|D19Ertd627e|Stx5 - 19|19 A syntaxin 5A protein-coding 673754 Gm20786 - - 8 A1.3|8 mitochondrial import receptor subunit TOM20 homolog pseudo 269713 Mm.255138 NM_009990 ENSMUSG00000063146 Clip2 B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4 - 5 G2|5 74.63 cM CAP-GLY domain containing linker protein 2 protein-coding 105244207 XR_866459 Gm39857 - - 2 C3|2 predicted gene, 39857 ncRNA 18316 Mm.222834 NM_146335 ENSMUSG00000048101 Olfr19 M12|MOR140-1|MTPCR15 - 16|16 A3 olfactory receptor 19 protein-coding 100417603 Gm11357 - - 13|13 A3.1 craniofacial development protein 1 pseudogene pseudo 74072 Mm.84915 NR_040731 ENSMUSG00000111836 4933407I05Rik - - 9|9 A5.3 RIKEN cDNA 4933407I05 gene ncRNA 114749 Daq19 D8.1 - 8 18.89 cM directional asymmetry QTL 19 unknown 378462 Mm.45208 NM_194269 ENSMUSG00000045257 Morn2 Mopt - 17|17 E3 MORN repeat containing 2 protein-coding 100035198 Gsi2 - - 10 66.65 cM glomerulsclerosis index 2 unknown 18798 Mm.38009 NM_013829 ENSMUSG00000039943 Plcb4 A930039J07Rik|AI854601|C230058B11Rik - 2 F3|2 66.64 cM phospholipase C, beta 4 protein-coding 102635020 Mm.132956 NR_153789 Gm32461 - - 16 C3.3|16 predicted gene, 32461 ncRNA 224419 Mm.194466 NM_144854 ENSMUSG00000025610 Map3k7cl C21orf7|ORF63|Tak1l - 16|16 C3.3 Map3k7 C-terminal like protein-coding 76932 Mm.41637 NM_029802 ENSMUSG00000030881 Arfip2 2310002N04Rik|POR|Por1 - 7|7 E3 ADP-ribosylation factor interacting protein 2 protein-coding 21032 T(10;11)Rl TRl - - reciprocal translocation, Chr 10 and 11, Russell other 108167788 XR_001779704 Gm46206 - - 1 A1|1 predicted gene, 46206 ncRNA 78730 Mm.246682 E130114A11Rik - - X|X RIKEN cDNA E130114A11 gene protein-coding 105246544 XR_877757 Gm41818 - - 19 B|19 predicted gene, 41818 ncRNA 102640578 XR_388277 Gm36608 - - 19 A|19 predicted gene, 36608 ncRNA 27711 D1Dau32 - - - DNA segment, Chr 1, DA Underhill 32 unknown 114332 Mm.396078 NM_053247 ENSMUSG00000030787 Lyve1 1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1 - 7|7 E3 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding 100041818 Gm3527 - - 5 A3|5 predicted gene 3527 pseudo 108169208 LOC108169208 - - - Pomc promoter region biological-region 225020 Mm.236835 NM_199448 ENSMUSG00000056121 Fez2 9030616F16|D17Ertd315e - 17 E2|17 48.57 cM fasciculation and elongation protein zeta 2 (zygin II) protein-coding 107684 Mm.416311 NM_178893 ENSMUSG00000028337 Coro2a 9030208C03Rik|AI563590|IR10 - 4|4 B1 coronin, actin binding protein 2A protein-coding 102467352 n-TKctt28 n-Tk28 - 13 A2|13 nuclear encoded tRNA lysine 28 (anticodon TTT) tRNA 102636037 Mm.343137 XR_389044 Gm38483 - - 11 D|11 predicted gene, 38483 ncRNA 105246727 XR_878602 Gm41969 - - 1 G1|1 predicted gene, 41969 ncRNA 108168128 n-TSaga8 Trnas-aga|n-Ts8 - 13 A3.1|13 nuclear encoded tRNA serine 8 (anticodon AGA) tRNA 328855 Mm.137742 XR_876946 E330032C10Rik E330032C10 - 17|17 E2 RIKEN cDNA E330032C10 gene ncRNA 21260 T(7;16)235Dn T235Dn - - reciprocal translocation, Chr 7 and 16, Davisson 235 other 66576 Mm.181721 NM_025641 ENSMUSG00000063882 Uqcrh 2210416J04Rik|2310021J10Rik|2610041P16Rik - 4|4 D1 ubiquinol-cytochrome c reductase hinge protein protein-coding 210714 Gm4768 EG210714 - 7|7 F3 Rho family GTPase 2 pseudogene pseudo 109560 Tal - - - talipes unknown 68308 Mm.390669 NR_015568 ENSMUSG00000090585 4933406F09Rik 1700007H14Rik|4930429F21Rik|4930570O04Rik|Gm3768 - 14 4.38 cM|14 A1 RIKEN cDNA 4933406F09 gene ncRNA 666690 Gm8241 EG666690 - 1 C1.1|1 DnaJ (Hsp40) homolog, subfamily C, member 27 pseudogene pseudo 68127 Mm.110270 NM_001080935 ENSMUSG00000050538 B230217C12Rik AI840637 - 11|11 D RIKEN cDNA B230217C12 gene protein-coding 101055836 LOC101055836 - - 19 A membrane-spanning 4-domains subfamily A member 6D-like pseudo 100043150 Mm.334264 NR_046077 ENSMUSG00000108504 Gm4265 - - 7 F3|7 predicted gene 4265 ncRNA 105244428 Gm40037 - - 11|11 predicted gene, 40037 ncRNA 240057 Mm.328888 NM_001281491 ENSMUSG00000067629 Syngap1 Gm1963|Syngap - 17|17 A3.3 synaptic Ras GTPase activating protein 1 homolog (rat) protein-coding 73409 Mm.69443 NR_040526 ENSMUSG00000107341 1700065J11Rik - - 6|6 B1 RIKEN cDNA 1700065J11 gene ncRNA 258433 Mm.271361 NM_146441 ENSMUSG00000058515 Olfr933 MOR171-22 - 9|9 A5.1 olfactory receptor 933 protein-coding 239790 Mm.390880 NM_198112 ENSMUSG00000052276 Ostn Ostc - 16|16 B2 osteocrin protein-coding 74845 Mm.453074 XR_383778 4930404K13Rik - - 14|14 E4 RIKEN cDNA 4930404K13 gene ncRNA 100040707 Gm2920 - - 9|9 E4 predicted gene 2920 pseudo 70676 Mm.133132 NM_027506 ENSMUSG00000056870 Gulp1 3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2 - 1|1 C1.1 GULP, engulfment adaptor PTB domain containing 1 protein-coding 70928 Mm.379188 NM_080510 ENSMUSG00000033368 Trim69 4921519C19Rik|Rnf36|Trif|Trimless - 2|2 E5 tripartite motif-containing 69 protein-coding 100862287 LOC100862287 - - - uncharacterized LOC100862287 ncRNA 621501 Gm6235 EG621501 - 18|18 A1 profilin 1 pseudogene pseudo 100035931 Wght6 - - - weight 6 unknown 108168724 XM_017319051 LOC108168724 - - - synaptonemal complex protein 3-like protein-coding 100416916 Gm18319 - - 8|8 A1.2 predicted gene, 18319 pseudo 258751 Mm.377673 NM_146756 ENSMUSG00000073948 Olfr608 MOR26-3 - 7|7 E3 olfactory receptor 608 protein-coding 67239 Mm.11480 NM_023323 ENSMUSG00000038510 Rpf2 2810470K21Rik|AU040229|AU043242|Bxdc1 - 10|10 B1 ribosome production factor 2 homolog protein-coding 234356 Mm.334569 NM_172753 ENSMUSG00000036356 Csgalnact1 4732435N03Rik|CSGalNAcT-1 - 8|8 B3.3 chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 73959 Mm.60616 NR_040544 ENSMUSG00000102699 4930433B08Rik - - 3|3 A1 RIKEN cDNA 4930433B08 gene ncRNA 258154 Mm.422653 NM_001011852 ENSMUSG00000059873 Olfr1029 MOR198-1P - 2|2 D olfactory receptor 1029 protein-coding 20021 Mm.292492 NM_009090 ENSMUSG00000031783 Polr2c 33kDa|RPB3|Rpo2-3|mRBP31 - 8|8 C5 polymerase (RNA) II (DNA directed) polypeptide C protein-coding 57431 Mm.10721 NM_020566 ENSMUSG00000024963 Dnajc4 Hspf2|Mcg18 - 19|19 A DnaJ heat shock protein family (Hsp40) member C4 protein-coding 245403 Mm.55270 NM_175539 ENSMUSG00000050926 Dcaf12l2 A130007F10Rik|Wdr40c - X|X A4 DDB1 and CUL4 associated factor 12-like 2 protein-coding 109279857 LOC109279857 Mm38 - - VISTA enhancer mm38 biological-region 547311 Gm6032 EG547311 - 16|16 C3.3 RNA binding motif, single stranded interacting protein 2 pseudogene pseudo 667251 Gm11868 Gm1864 - 4|4 A3 cytochrome b5 reductase 4 pseudogene pseudo 235041 Mm.257371 NM_145611 ENSMUSG00000032194 Kank2 AI504612|Ankrd25|BC010245 - 9|9 A3 KN motif and ankyrin repeat domains 2 protein-coding 114910 Cosz1 Scis1 - 9 57.46 cM cocaine seizure 1 unknown 100502618 Gm19288 - - 7|7 69.32 cM predicted gene, 19288 ncRNA 100041310 Gm3266 - - 10|10 A1 glutathione S-transferase, pi 1 pseudogene pseudo 102467580 n-TMcat18 n-Tm18 - - nuclear encoded tRNA methionine 18 (anticodon CAT) tRNA 102637177 XR_387442 Gm34056 - - 1 E4|1 predicted gene, 34056 ncRNA 83674 Mm.329864 NM_031396 ENSMUSG00000025189 Cnnm1 AI846314|Acdp1|CLP-1 - 19 C3|19 36.67 cM cyclin M1 protein-coding 79566 Mm.290534 NM_024480 ENSMUSG00000013646 Sh3bp5l 2310074E09Rik|BC003251|mKIAA1720 - 11|11 B1.3 SH3 binding domain protein 5 like protein-coding 102635751 XR_375143 Gm14216 - - 2 H1|2 76.79 cM predicted gene 14216 ncRNA 74673 Mm.273303 NM_029048 ENSMUSG00000039296 Spdye4a 4930445A17Rik|4930451F05Rik|RINGO E4A|Spdy2|Spdyb|Spdye4|Spy/Ringo B - 5|5 G2 speedy/RINGO cell cycle regulator family, member E4A protein-coding 258574 Olfr1021-ps1 MOR201-1 - 2|2 D olfactory receptor 1021, pseudogene 1 pseudo 108546 Ms13-20 Ms13-Hf4 - - minisatellite 13-20 detected by M13 phage probe other 258103 Mm.376121 NM_001011834 ENSMUSG00000045225 Olfr1152 MOR177-12 - 2|2 D olfactory receptor 1152 protein-coding 13730 Mm.182785 NM_010128 ENSMUSG00000030208 Emp1 I-8-09|TMP - 6 G1|6 66.25 cM epithelial membrane protein 1 protein-coding 235180 Mm.5264 NM_183171 ENSMUSG00000032118 Fez1 UNC-76|UNC76 - 9|9 A4 fasciculation and elongation protein zeta 1 (zygin I) protein-coding 105242586 Gm38757 - - 5|5 predicted gene, 38757 ncRNA 100504087 Gm14593 - - X|X 30.06 cM 60S ribosomal protein L37-like pseudo 18539 Pcna-ps1 - - X|X C3 proliferating cell nuclear antigen pseudogene 1 pseudo 11676 Mm.7729 NM_009657 ENSMUSG00000017390 Aldoc AI847350|AU040929|Aldo3|Scrg2 - 11 B5|11 46.74 cM aldolase C, fructose-bisphosphate protein-coding 102634887 Mm.72944 NR_154548 Gm13112 - - 4|4 E2 predicted gene 13112 ncRNA 102632559 XR_376962 Gm30601 - - 5 C1|5 predicted gene, 30601 ncRNA 104030 Cyl - - - curly tail lethal unknown 73464 1700057A11Rik - - 2|2 RIKEN cDNA 1700057A11 gene protein-coding 109280006 LOC109280006 Mm985 - - VISTA enhancer mm985 biological-region 74513 Mm.126079 NM_001081324 ENSMUSG00000036902 Neto2 5530601C23Rik|AI854825|BTCL2 - 8|8 C3 neuropilin (NRP) and tolloid (TLL)-like 2 protein-coding 61329 D3Mit192 - - 3 45.28 cM DNA segment, Chr 3, Massachusetts Institute of Technology 192 unknown 114084 Axtofd3 - - - anxiety-open field defecation 3 unknown 672208 Gm9553 - - 1|1 C3 lactate dehydrogenase B pseudogene pseudo 75867 Mm.293069 4930507A01Rik 4930585P15Rik - 8|8 RIKEN cDNA 4930507A01 gene protein-coding 108168288 LOC108168288 - - 16 B1 mitochondrial import inner membrane translocase subunit Tim21 pseudogene pseudo 109623 Bhd - - - broad headed unknown 383769 Gm5270 EG383769 - 2|2 H2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 22201 Mm.1104 NM_009457 ENSMUSG00000001924 Uba1 A1S9|Sbx|Ube-1|Ube1x - X A1.3|X 16.15 cM ubiquitin-like modifier activating enzyme 1 protein-coding 105245814 XR_874812 Gm41204 - - 14 D2|14 predicted gene, 41204 ncRNA 100417656 Gm18744 - - 4|4 C3 suppression of tumorigenicity 7-like pseudogene pseudo 110330 Jund2 - - - jun D proto-oncogene 2 protein-coding 107182 Mm.295062 NM_001080706 ENSMUSG00000040565 Btaf1 AI414500|AI447930|E430027O22Rik|TAF170 - 19|19 C2 B-TFIID TATA-box binding protein associated factor 1 protein-coding 105242576 XR_868709 Gm38750 - - 5 G3|5 predicted gene, 38750 ncRNA 100124673 Mm.442501 Trbv13-1 Tcrb|Tcrb-V8.3 - 6 19.2 cM|6 B1 T cell receptor beta, variable 13-1 other 232941 Mm.134068 NM_177691 ENSMUSG00000030402 Ppm1n A930002H20|C79127 - 7|7 A3 protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative) protein-coding 12388 Mm.35738 NM_007615 ENSMUSG00000034101 Ctnnd1 AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384 - 2 D|2 49.45 cM catenin (cadherin associated protein), delta 1 protein-coding 102632676 Gm28738 - - Y|Y predicted gene 28738 protein-coding 434401 Gm5616 EG434401 - 9|9 A5.3 NHP2 non-histone chromosome protein 2-like 1 pseudogene pseudo 277360 Mm.34420 NM_177782 ENSMUSG00000039621 Prex1 G630042G04|P-REX1|Setd6 - 2|2 H3 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding 195180 Ighv9-1 Gm16987 - 12|12 F1 immunoglobulin heavy variable 9-1 other 102633697 XR_383889 Gm31458 - - 15 B1|15 predicted gene, 31458 ncRNA 791355 Mm.402059 Arf4os 4930570N19Rik - - ADP-ribosylation factor 4, opposite strand protein-coding 100049600 Fmtq19 - - - femur mechanical trait QTL 19 unknown 791285 Gm16487 - - - predicted gene 16487 unknown 105245496 Gm40944 - - 13|13 predicted gene, 40944 ncRNA 102635052 Gm15279 - - X|X 19.87 cM predicted gene 15279 pseudo 112163569 Mm.442340 AU023036 - - - expressed sequence AU023036 protein-coding 11596 Mm.3383 NM_007425 ENSMUSG00000015452 Ager RAGE - 17|17 B1 advanced glycosylation end product-specific receptor protein-coding 100526495 NR_037266 ENSMUSG00000106488 Mir669a-11 mmu-mir-669a-11 - 2 A1|2 8.22 cM microRNA 669a-11 ncRNA 100124368 Traj21 Gm16815 - 14|14 C2 T cell receptor alpha joining 21 other 665207 Gm7541 EG665207 - 16|16 A1 ferritin light chain 2 pseudogene pseudo 26905 Mm.218851 NM_012010 ENSMUSG00000035150 Eif2s3x AA409828|AA547477|AI314668|Eif-2gx - X C3|X 41.52 cM eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked protein-coding 72122 Mm.75434 NR_045429 ENSMUSG00000100714 2010308F09Rik - - X|X A1.1 RIKEN cDNA 2010308F09 gene ncRNA 493054 Fembrs2 - - 8 21.16 cM femur breaking strength 2 unknown 258185 NM_001005780 Olfr255 GA_x6K02T2N0WB-1967-2905|MOR135-21P - - olfactory receptor 255 protein-coding 60788 D3Mit45 - - 3 72.43 cM DNA segment, Chr 3, Massachusetts Institute of Technology 45 unknown 70638 Mm.441986 NM_183087 ENSMUSG00000030518 Fam189a1 5730507A09Rik|AW047451 - 7|7 C family with sequence similarity 189, member A1 protein-coding 67556 Mm.26612 NM_026234 ENSMUSG00000050229 Pigm 4933437L05Rik|AI644422|AV302080|C920011G20Rik - 1 H3|1 79.73 cM phosphatidylinositol glycan anchor biosynthesis, class M protein-coding 625115 Gm6555 EG625115 - 3|3 E1 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 pseudogene pseudo 100035820 Char8 - - 11 39.47 cM P. chabaudi malaria resistance QTL 8 unknown 633188 Gm20762 - - 19|19 D3 predicted gene, 20762 pseudo 28080 Mm.41 NM_138597 ENSMUSG00000022956 Atp5o ATPO|D12Wsu28e|OSCP - 16|16 C4 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit protein-coding 102639864 XR_376936 Gm36076 - - 5 B3|5 predicted gene, 36076 ncRNA 102631511 XR_375220 Gm29831 - - 2 H3|2 predicted gene, 29831 ncRNA 100043283 Gm4335 - - 15 E3|15 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 103971 Eo - - - eye opacity unknown 73104 3110005L21Rik - - 17|17 RIKEN cDNA 3110005L21 gene protein-coding 105450 Mm.272673 NM_153127 ENSMUSG00000041445 Mmrn2 AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1 - 14|14 B multimerin 2 protein-coding 28274 D10Jhu68 - - 10 38.61 cM DNA segment, Chr 10, Johns Hopkins University 68 unknown 102636452 Gm14450 - - X A1.1|X 2.65 cM predicted gene 14450 pseudo 111533 Xmv45 Xmv-45 - - xenotropic murine leukemia virus 45 other 61262 D2Mit159 - - 2 46.94 cM DNA segment, Chr 2, Massachusetts Institute of Technology 159 unknown 102634124 XR_389448 Gm31785 - - 5 E5|5 predicted gene, 31785 ncRNA 100775175 Ighv1-82 Gm16747 - 12 F2|12 62.59 cM immunoglobulin heavy variable 1-82 other 320078 Mm.287131 NM_177068 ENSMUSG00000038463 Olfml2b 1110018N05Rik|4832415H08Rik|AI467542 - 1|1 H3 olfactomedin-like 2B protein-coding 78221 Mm.399298 NR_040576 4930567J20Rik - - 16|16 C3.1 RIKEN cDNA 4930567J20 gene ncRNA 407800 Mm.386931 NM_001012324 ENSMUSG00000043631 Ecm2 9030618O22Rik|BC065151|tenonectin - 13|13 A5 extracellular matrix protein 2, female organ and adipocyte specific protein-coding 56702 Mm.221314 NM_020034 ENSMUSG00000058773 Hist1h1b H1.5|H1B|H1f5|H1s-3 - 13|13 A3.1 histone cluster 1, H1b protein-coding 320757 Mm.347738 NM_177255 A630052C17Rik - - 11|11 A3.3 RIKEN cDNA A630052C17 gene ncRNA 56405 Mm.240885 NM_019819 ENSMUSG00000018648 Dusp14 1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6 - 11 C|11 51.29 cM dual specificity phosphatase 14 protein-coding 674310 Gm12267 - - 11|11 B2 ribosomal protein S4, X-linked pseudogene pseudo 100034892 Lvic5 - - - liver iron content 5 unknown 102640300 Mm.405765 XR_878515 Gm16083 - - 1 E4|1 56.89 cM predicted gene 16083 ncRNA 52776 D11Ucl1e - - - DNA segment, Chr 11, University College London 1, expressed unknown 105245284 XR_872029 Gm40760 - - 10 D1|10 predicted gene, 40760 ncRNA 100043479 Mm.412428 Gm4466 - - 19 D2|19 predicted gene 4466 unknown 74578 4833408G04Rik - - 3|3 RIKEN cDNA 4833408G04 gene protein-coding 100217454 NR_028549 ENSMUSG00000064441 Snord37 MBII-376 - 10 C1|10 small nucleolar RNA, C/D box 37 snoRNA 77388 C030018G05Rik - - 10|10 RIKEN cDNA C030018G05 gene protein-coding 20238 Mm.342683 NM_009124 ENSMUSG00000046876 Atxn1 2900016G23Rik|Atx1|C85907|Gm10786|Sca1 - 13 A5|13 21.98 cM ataxin 1 protein-coding 14702 Mm.41737 NM_010315 ENSMUSG00000043004 Gng2 - - 14 A3|14 11.17 cM guanine nucleotide binding protein (G protein), gamma 2 protein-coding 62380 D13Mit173 - - 13 4.55 cM DNA segment, Chr 13, Massachusetts Institute of Technology 173 unknown 105243798 Gm39568 - - 11|11 predicted gene, 39568 ncRNA 257992 Olfr1430-ps1 MOR214-8P - 19|19 A olfactory receptor 1430, pseudogene 1 pseudo 107884 Idd14 - - 13 20.16 cM insulin dependent diabetes susceptibility 14 protein-coding 667964 Gm8899 EG667964 - 10|10 B1 predicted gene 8899 pseudo 100039787 Gm2424 - - 18|18 A1 cell division cycle associated 7 pseudogene pseudo 12850 Mm.20634 NM_009940 ENSMUSG00000030652 Coq7 clk-1 - 7 F1|7 63.44 cM demethyl-Q 7 protein-coding 246741 Renf2 - - 16 49.62 cM renal failure 2 unknown 258220 Mm.377383 NM_001011519 ENSMUSG00000061875 Olfr1148 MOR264-7 - 2|2 D olfactory receptor 1148 protein-coding 70827 Mm.222887 NM_172406 ENSMUSG00000026028 Trak2 2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549 - 1|1 C1.3 trafficking protein, kinesin binding 2 protein-coding 69895 Mm.260791 NR_028574 ENSMUSG00000104960 Snhg8 1110065M07Rik|2010109N14Rik - 3|3 G1 small nucleolar RNA host gene 8 ncRNA 100035644 Mfiq4 - - - M16 feed intake QTL 4 unknown 67286 Mm.41779 NM_026073 ENSMUSG00000007987 Ift22 3110017O03Rik|AI835745|AI847427|Rabl5 - 5|5 G2 intraflagellar transport 22 protein-coding 100418478 Gm19236 - - 15|15 C protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene pseudo 100417800 Gm18836 - - 14|14 E4 predicted gene, 18836 pseudo 108167847 XR_001780086 Gm46251 - - 11 A4|11 predicted gene, 46251 ncRNA 100040112 LOC100040112 - - 5|5 C3.3 uncharacterized LOC100040112 protein-coding 105246143 XR_876185 Gm41479 - - 16 C3.3|16 predicted gene, 41479 ncRNA 105243223 XR_878947 LOC105243223 - - 8 C1 uncharacterized LOC105243223 ncRNA 102636831 XR_388575 Gm33791 - - 11 A5|11 predicted gene, 33791 ncRNA 102639560 XR_001780637 Gm35844 - - 12 C3|12 predicted gene, 35844 ncRNA 102637369 XR_383392 Gm34198 - - 14 C1|14 predicted gene, 34198 ncRNA 723895 NR_029747 ENSMUSG00000065408 Mir31 Mirn31|miR-31|mmu-mir-31 - 4|4 C4 microRNA 31 ncRNA 78512 Mm.23696 NR_045079 ENSMUSG00000096965 3300005D01Rik - - 17|17 A1 RIKEN cDNA 3300005D01 gene ncRNA 102639593 Gm29079 - - Y|Y predicted gene 29079 ncRNA 224090 Mm.241459 NM_172614 ENSMUSG00000022537 Tmem44 1700007N03Rik|9330161C17Rik|B230220N21 - 16|16 B2 transmembrane protein 44 protein-coding 108167763 XR_001779673 Gm46185 - - 10 D3|10 predicted gene, 46185 ncRNA 93683 Mm.24411 NM_033320 ENSMUSG00000032252 Glce 1110017N23Rik|AI747411|C130034A12Rik|Hsepi - 9|9 B glucuronyl C5-epimerase protein-coding 100417267 Gm18492 - - 3|3 G3 TatD DNase domain containing 2 pseudogene pseudo 213765 Mm.78965 NM_172521 ENSMUSG00000041358 Nutm1 4932438M10|Nut - 2|2 E3 NUT midline carcinoma, family member 1 protein-coding 19120 Mm.291887 NM_013638 ENSMUSG00000050058 Prm3 BC061127|PX|Pxg - 16 A1|16 5.84 cM protamine 3 protein-coding 29808 Mm.87532 NM_013720 ENSMUSG00000033943 Mga AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5 - 2|2 E5 MAX gene associated protein-coding 100036086 Nba5 - - - New Zealand Black autoimmunity 5 unknown 216227 Mm.233921 NM_182959 ENSMUSG00000019935 Slc17a8 BC042593|Vglut3 - 10|10 C2 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 protein-coding 100041346 Mm.426191 NR_038299 ENSMUSG00000101005 Gm20871 - - Y|Y C2 Sycp3 like Y-linked pseudogene pseudo 723909 NR_029771 ENSMUSG00000065436 Mir342 Mirn342|mmu-mir-342 - 12|12 F1 microRNA 342 ncRNA 621080 Mm.373292 NM_001039220 ENSMUSG00000074384 AI429214 - - 8|8 A4 expressed sequence AI429214 protein-coding 75360 Mm.67233 NR_040656 ENSMUSG00000086257 4930548K13Rik - - 4|4 A3 RIKEN cDNA 4930548K13 gene ncRNA 73057 2900086E13Rik - - 3|3 RIKEN cDNA 2900086E13 gene protein-coding 105246010 XR_875551 Gm41376 - - 15 E3|15 predicted gene, 41376 ncRNA 12405 Mm.70775 NM_172633 ENSMUSG00000024647 Cbln2 6330593N19Rik|A730004O05 - 18 E4|18 58.63 cM cerebellin 2 precursor protein protein-coding 12370 Mm.336851 NM_009812 ENSMUSG00000026029 Casp8 CASP-8|FLICE|MACH|Mch5 - 1 C1.3|1 29.19 cM caspase 8 protein-coding 102632608 Gm30638 - - Y|Y predicted gene, 30638 protein-coding 102638103 Gm20922 - - Y|Y predicted gene, 20922 protein-coding 102632289 Gm30403 - - X|X predicted gene, 30403 ncRNA 62888 D11Mit221 - - 11 51.34 cM DNA segment, Chr 11, Massachusetts Institute of Technology 221 unknown 74021 3222402N08Rik - - 17|17 RIKEN cDNA 3222402N08 gene protein-coding 105245918 XR_875153 Gm41298 - - 15 B3.1|15 predicted gene, 41298 ncRNA 102639217 Gm35577 - - 17|17 predicted gene, 35577 ncRNA 102639175 XR_373808 Gm35546 - - 1 H5|1 predicted gene, 35546 ncRNA 93696 Mm.23095 NM_053068 ENSMUSG00000068391 Chrac1 2410152E03Rik|2810406L04Rik|YCL1 - 15|15 D3 chromatin accessibility complex 1 protein-coding 102640669 Gm36683 - - 1|1 predicted gene, 36683 ncRNA 100316727 NR_035519 ENSMUSG00000089294 Mir2139 mmu-mir-2139 - 4 D3|4 71.03 cM microRNA 2139 ncRNA 102632328 XR_376499 Gm30429 - - 4 C7|4 predicted gene, 30429 ncRNA 20737 Mm.283714 NM_009259 ENSMUSG00000051457 Spn A630014B01Rik|Cd43|Galgp|Ly-48|Ly48 - 7 F3|7 69.35 cM sialophorin protein-coding 105859 Mm.22524 NM_145473 ENSMUSG00000042109 Csdc2 AI415250|AI481750|Pippin - 15|15 E1 cold shock domain containing C2, RNA binding protein-coding 108167922 XM_017314896 LOC108167922 - - 11 D 60S ribosomal protein L27 protein-coding 258317 Mm.377433 NM_146320 ENSMUSG00000068814 Olfr1145 MOR264-19 - 2|2 D olfactory receptor 1145 protein-coding 360071 D17Jcs84 - - - DNA segment, Chr 17, John C. Schimenti 84 unknown 629756 Mm.189007 NM_001039501 ENSMUSG00000070529 Wfdc10 Gm120 - 2|2 H3 WAP four-disulfide core domain 10 protein-coding 78607 E130102B10Rik - - 16|16 RIKEN cDNA E130102B10 gene protein-coding 171264 Mm.222637 NM_134230 ENSMUSG00000043066 Vmn1r66 S67|V1re11|V1re3 - 7|7 A1 vomeronasal 1 receptor 66 protein-coding 108167403 LOC108167403 - - - Ig heavy chain V region 5-84-like other 102632291 LOC102632291 - - 12 C1 TAR DNA-binding protein 43 pseudogene pseudo 114585 Mm.42070 NM_033477 ENSMUSG00000043311 D17H6S53E G4|NG34 - 17 B1|17 18.59 cM DNA segment, Chr 17, human D6S53E protein-coding 112169 Daq7 - - 12 29.39 cM directional asymmetry QTL 7 unknown 21264 T(7;17)3Bkm T3Bkm - - reciprocal translocation, Chr 7 and 17, Benova/Koleva/Manolova 3 other 665985 Gm20781 - - Y|Y A1 predicted gene, 20781 pseudo 258386 Mm.377471 NM_146391 ENSMUSG00000075186 Olfr1058 MOR190-2 - 2|2 D olfactory receptor 1058 protein-coding 108167802 XR_001779751 Gm46218 - - 10 A4|10 predicted gene, 46218 ncRNA 102467543 n-TIaat5 n-Ti5 - 11 B3|11 nuclear encoded tRNA isoleucine 5 (anticodon AAT) tRNA 108350 Emv8 Emv-8 - - endogenous ecotropic MuLV 8 other 102448 Mm.219497 NM_001033209 ENSMUSG00000035769 Xylb AI132223|AI327421 - 9|9 F3 xylulokinase homolog (H. influenzae) protein-coding 102639296 Gm35641 - - X|X predicted gene, 35641 ncRNA 27753 D1Sta13 - - 1 81.01 cM DNA segment, Chr 1, Philip Stanier 13 unknown 102638324 Gm34915 - - 9|9 predicted gene, 34915 protein-coding 105244679 XR_868103 Gm40241 - - 4 D2.2|4 predicted gene, 40241 ncRNA 68939 Mm.293316 NM_026878 ENSMUSG00000049907 Rasl11b 1190017B18Rik - 5|5 C3.3 RAS-like, family 11, member B protein-coding 246207 L1Md-Gf46 GF46 - - L1 repeat, Gf subfamily, member 46 other 107963953 LOC107963953 - - - Ghr upstream L2 promoter region biological-region 69327 Mm.46470 NM_027040 ENSMUSG00000026831 1700007K13Rik Rbest47 - 2|2 A3 RIKEN cDNA 1700007K13 gene protein-coding 257968 Olfr252-ps1 GA_x6K02T2MYY9-1405-1893|MOR211-6P - 19|19 olfactory receptor 252, pseudogene 1 pseudo 77970 Mm.259790 A930026I22Rik AW048020 - - RIKEN cDNA A930026I22 gene protein-coding 102467433 n-TLtag3 n-Tl29 - 11 B3|11 nuclear encoded tRNA leucine 3 (anticodon TAG) tRNA 56558 D6Ott11 - - - DNA segment, Chr 6, Animal Research Centre, Ottawa 11 unknown 100416797 Gm18259 - - 13|13 A1 R3H domain containing 2 pseudogene pseudo 102467502 n-TCgca38 n-Tc38 - 6 B2.3|6 nuclear encoded tRNA cysteine 38 (anticodon GCA) tRNA 22035 Mm.1062 NM_009425 ENSMUSG00000039304 Tnfsf10 A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail - 3|3 A3 tumor necrosis factor (ligand) superfamily, member 10 protein-coding 100415960 Gm17841 - - 7|7 F4 nucleolin pseudogene pseudo 666155 Gm7953 EG666155 - 14|14 B predicted gene 7953 pseudo 105243081 XR_870033 Gm39109 - - 7 F3|7 predicted gene, 39109 ncRNA 381570 Mm.332028 NM_198661 ENSMUSG00000066030 Oog2 C85069 - 4|4 E1 oogenesin 2 protein-coding 67903 Mm.20945 NM_018771 ENSMUSG00000019433 Gipc1 GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2 - 8|8 C2 GIPC PDZ domain containing family, member 1 protein-coding 100416270 Gm18012 - - 6|6 B3 deoxycytidine kinase pseudogene pseudo 100312501 Vmn1r-ps55 - - 7 A1|7 7.26 cM vomeronasal 1 receptor, pseudogene 55 pseudo 61295 D2Mit287 - - 2 79.98 cM DNA segment, Chr 2, Massachusetts Institute of Technology 287 unknown 631371 Gm11784 - - 4|4 A1 spermatogenesis associated glutamate (E)-rich protein 4d pseudogene pseudo 15260 Mm.15694 NM_010435 ENSMUSG00000022702 Hira AA138857|D16Ertd95e|Gm15797|N28177|Tuple1 - 16 A3|16 11.69 cM histone cell cycle regulator protein-coding 53750 D13Byu5 D0Byu10 - - DNA segment, Chr 13, Brigham Young University 5 unknown 628946 Mm.484974 NM_001166731 ENSMUSG00000095864 Vmn1r77 Gm6935 - 7 A1|7 vomeronasal 1 receptor 77 protein-coding 100417167 Gm18434 - - 2|2 A1 crumbs homolog 1 pseudogene pseudo 492911 Mptp1 - - - MPTP sensitivity 1 unknown 108167413 XR_001778067 Gm45976 - - 7 A3|7 predicted gene, 45976 ncRNA 387245 NR_029727 ENSMUSG00000065564 Mirlet7b Mirnlet7b|let-7b|mmu-let-7b - 15|15 E2 microRNA let7b ncRNA 107447 Bgb - - - beta-D-galactosidase in brain protein-coding 102115 Mm.294975 NM_133964 ENSMUSG00000078440 Dohh 1110033C18Rik|AI585913|AL022869|Hlrc1 - 10|10 C1 deoxyhypusine hydroxylase/monooxygenase protein-coding 62533 D11Mit164 - - 11 34.5 cM DNA segment, Chr 11, Massachusetts Institute of Technology 164 unknown 382239 Mm.336224 NM_001033471 ENSMUSG00000072995 Cpxcr1 Gm1143 - X|X E1 CPX chromosome region, candidate 1 protein-coding 61902 D2Mit443 - - 2 58.98 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 443 unknown 100503727 Mm.32214 NR_045616 ENSMUSG00000102099 1700011B04Rik - - 13|13 A3.3 RIKEN cDNA 1700011B04 gene ncRNA 320359 A730010A20Rik - - 10|10 RIKEN cDNA A730010A20 gene protein-coding 258784 Mm.377688 NM_146788 ENSMUSG00000111456 Olfr1245 MOR23112 - 2|2 E1 olfactory receptor 1245 protein-coding 62060 D10Mit14 - - 10 66.75 cM DNA segment, Chr 10, Massachusetts Institute of Technology 14 unknown 23934 Mm.22154 NM_011837 ENSMUSG00000022577 Ly6h - - 15|15 D3 lymphocyte antigen 6 complex, locus H protein-coding 28290 D10Jhu57 - - - DNA segment, Chr 10, Johns Hopkins University 57 unknown 67944 Mm.443280 NM_026469 ENSMUSG00000071686 Tex13a 1700025D03Rik - X|X F1 testis expressed 13A protein-coding 71007 Mm.334285 NM_001081331 ENSMUSG00000030994 D7Ertd443e 4933400E14Rik|FATS|Gm497 - 7 F3|7 78.4 cM DNA segment, Chr 7, ERATO Doi 443, expressed protein-coding 102631949 XR_381988 Gm30150 - - 12 F1|12 predicted gene, 30150 ncRNA 112256 Sst1 - - 1 44.07 cM susceptibility to tuberculosis 1 unknown 78744 Mm.440305 9630009N12Rik - - - RIKEN cDNA 9630009N12 gene protein-coding 239133 Mm.127330 NM_173419 ENSMUSG00000048281 Dleu7 BC038059 - 14|14 D1 deleted in lymphocytic leukemia, 7 protein-coding 237880 Mm.435528 NM_001033765 1700071K01Rik - - 11|11 B5 RIKEN cDNA 1700071K01 gene protein-coding 112037 Bw10 - - - body weight QTL 10 unknown 545432 NM_001177434 Gm13695 Gm5838 - 2|2 D CWC22 spliceosome-associated protein homolog pseudogene pseudo 102632631 XR_878722 Gm30657 - - 5 F|5 predicted gene, 30657 ncRNA 170728 Mm.390253 NM_130892 ENSMUSG00000019864 Rtn4ip1 D10Ertd690e|NIMP - 10 B2|10 23.12 cM reticulon 4 interacting protein 1 protein-coding 66656 Mm.258927 NM_023240 ENSMUSG00000055762 Eef1d EF-1-delta - 15|15 D3 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) protein-coding 102637091 Gm28193 - - Y|Y predicted gene 28193 ncRNA 225861 Mm.20071 NM_001024560 ENSMUSG00000056185 Snx32 B930037P14Rik|Snx6b - 19|19 A sorting nexin 32 protein-coding 225583 Mm.209711 NM_173759 ENSMUSG00000050875 A730017C20Rik - - 18|18 D3 RIKEN cDNA A730017C20 gene protein-coding 110630 Tel7p - - - telomeric sequence, Chr 7, centromere end protein-coding 102632185 Gm21808 - - Y|Y predicted gene, 21808 protein-coding 62880 D11Mit235 - - 11 25.94 cM DNA segment, Chr 11, Massachusetts Institute of Technology 235 unknown 102639910 XR_389225 Gm36111 - - 11 E2|11 predicted gene, 36111 ncRNA 667656 Gm8748 EG667656 - 8|8 D2 ribosomal protein S7 pseudogene pseudo 105244713 XR_872495 ENSMUSG00000113465 Gm40271 - - 12 A1.1|12 predicted gene, 40271 ncRNA 242505 Mm.389582 NM_001017427 ENSMUSG00000043003 Rasef BC030882|RAB45 - 4|4 C3 RAS and EF hand domain containing protein-coding 102632840 XR_378600 ENSMUSG00000109802 Gm30808 - - 7 F4|7 predicted gene, 30808 ncRNA 110141 Rn18s-rs6 Rnr19-2 - - 18s RNA, related sequence 6 rRNA 22642 Mm.389590 NM_009541 ENSMUSG00000006215 Zbtb17 AA589413|Lp-1|Miz1|Zfp100|mZ13 - 4|4 D3 zinc finger and BTB domain containing 17 protein-coding 75418 Mm.274222 2610034B04Rik - - 16|16 RIKEN cDNA 2610034B04 gene protein-coding 331004 Mm.326125 NM_177909 ENSMUSG00000031129 Slc9a9 5730527A11Rik|9930105B05|AI854429|Nhe9 - 9|9 E3.3 solute carrier family 9 (sodium/hydrogen exchanger), member 9 protein-coding 107844 Trex1c - - - Tcr1 region expressed 1, D17Leh66c region protein-coding 70448 Mm.70636 NM_175157 ENSMUSG00000054514 Atad3aos 2610204G22Rik - 4|4 E2 ATPase family, AAA domain containing 3A, opposite strand ncRNA 432838 Mm.318383 NM_001034880 ENSMUSG00000072624 Gm5460 EG432838 - 14 B|14 predicted gene 5460 protein-coding 107656 Mm.445335 NM_201255 ENSMUSG00000051617 Krt9 EPPK|K9|Krt1-9 - 11|11 D keratin 9 protein-coding 102636485 XR_390689 Gm12414 - - 4 C4|4 39.76 cM predicted gene 12414 ncRNA 319927 Mm.184803 9630050P21Rik - - 12|12 RIKEN cDNA 9630050P21 gene protein-coding 99439 Mm.108582 NM_001099297 ENSMUSG00000033268 Duox1 9930101G15Rik|AW987690|Duox2|LNOX1|LNOX2|NOXEF1|NOXEF2|P138-TOX|THOX1|THOX2 - 2|2 E5 dual oxidase 1 protein-coding 111752 Ms13-15 Ms13-Ps15 - - minisatellite 13-15 detected by M13 phage probe other 73848 Mm.482294 5430406J06Rik - - 11|11 RIKEN cDNA 5430406J06 gene protein-coding 62121 D12Mit97 - - 12 50.43 cM DNA segment, Chr 12, Massachusetts Institute of Technology 97 unknown 66437 Mm.25849 NM_025562 ENSMUSG00000019054 Fis1 2010003O14Rik|Ttc11 - 5|5 G2 fission, mitochondrial 1 protein-coding 14606 Gpin1 8430411H10Rik|Gin-1|Gin1 - - gross passage A viral integration region 1 other 102638396 XR_379167 Gm34973 - - 9 A2|9 predicted gene, 34973 ncRNA 13548 Mm.310973 NM_007890 ENSMUSG00000022897 Dyrk1a 2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb - 16 C4|16 55.3 cM dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a protein-coding 108168491 XR_001782862 Gm14362 - - X A1.1|X 1.84 cM predicted gene 14362 ncRNA 70735 6330403N20Rik - - 7|7 RIKEN cDNA 6330403N20 gene protein-coding 102633953 XR_375976 Gm31651 Gm43202 - 3 G1|3 predicted gene, 31651 ncRNA 102632369 Mm.421407 XR_391623 ENSMUSG00000108468 Gm30459 - - 7 D1|7 predicted gene, 30459 ncRNA 117067 D16H21S337E Pred69 - - DNA segment, Chr 16, human D21S337, expressed unknown 667536 Vmn1r-ps80 EG667536|Gm8691|Vmn1r-ps71 - 7|7 A3 vomeronasal 1 receptor, pseudogene 80 pseudo 100417709 Gm18774 - - 12|12 A1.1 NLR family, pyrin domain containing 2 pseudogene pseudo 70300 Mm.276298 NM_027376 ENSMUSG00000011658 Fuz 2600013E07Rik|b2b1273Clo - 7 B3|7 28.99 cM fuzzy planar cell polarity protein protein-coding 100042711 Obox4-ps14 Gm3981 - 7 A1|7 oocyte specific homeobox 4, pseudogene 14 pseudo 101056020 Gm29396 - - 9|9 predicted gene 29396 pseudo 623671 Gm11841 - - 4|4 A1 poly A binding protein, cytoplasmic 4 pseudogene pseudo 238447 Mm.303767 NM_001024700 Igha IgA|Igh-2 - 12 F1|12 62.09 cM immunoglobulin heavy constant alpha other 100503925 Gm17540 - - 9|9 21.42 cM predicted gene, 17540 ncRNA 20606 NM_009217 ENSMUSG00000047904 Sstr2 SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2 - 11 E2|11 79.05 cM somatostatin receptor 2 protein-coding 242687 Mm.23566 NM_153423 ENSMUSG00000028868 Wasf2 AW742646|D4Ertd13e|WAVE2 - 4 D2.3|4 66.22 cM WAS protein family, member 2 protein-coding 100124481 NR_030543 ENSMUSG00000077996 Mir190b Mirn190b|mir-190b - 3 F1|3 microRNA 190b ncRNA 229524 Mm.440405 NM_144898 ENSMUSG00000068922 Msto1 BC008103|mst - 3|3 F1 misato 1, mitochondrial distribution and morphology regulator protein-coding 100502807 Gm19385 - - 9|9 72.05 cM predicted gene, 19385 ncRNA 108168024 XR_001780677 Gm46372 - - 12 E|12 predicted gene, 46372 ncRNA 404257 Mrgprc4-ps MrgC4 - 7|7 B3 MAS-related GPR, member C4, pseudogene pseudo 72514 Mm.41674 NM_028263 ENSMUSG00000047632 Fgfbp3 2610306H15Rik|Fgf-bp3 - 19|19 C2 fibroblast growth factor binding protein 3 protein-coding 102637580 Gm29634 - - Y|Y predicted gene 29634 pseudo 16288 In(5)2Rk-d In(5)2Rk|In2Rk - - inversion, Chr 5, Roderick 2, distal other 101821 Mm.250627 AW050198 - - - expressed sequence AW050198 protein-coding 105244689 XR_868154 Gm40251 - - 4 D2.2|4 predicted gene, 40251 ncRNA 102636656 XR_378530 Gm33661 - - 7 F3|7 predicted gene, 33661 ncRNA 104112 Mm.282039 NM_134037 ENSMUSG00000020917 Acly A730098H14Rik|AW538652 - 11|11 D ATP citrate lyase protein-coding 100043805 Gm10224 - - 6|6 F1 predicted pseudogene 10224 pseudo 53958 Mm.396311 AU035318 AI746539 - 16|16 EST AU035318 protein-coding 193322 Mm.208554 NM_178657 ENSMUSG00000096576 Oog1 Oog|c-1 - 12|12 D2 oogenesin 1 protein-coding 50497 Mm.89341 NM_015765 ENSMUSG00000051396 Hspa14 70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1 - 2|2 A1 heat shock protein 14 protein-coding 353346 Mm.239268 NM_181754 ENSMUSG00000053101 Gpr141 PGR13 - 13|13 A2 G protein-coupled receptor 141 protein-coding 78108 Mm.440743 NR_046011 ENSMUSG00000108591 Particl 4930414L22Rik|AI449819 - 6 C1|6 promoter of Mat2a antisense radiation induced circulating long non-coding RNA ncRNA 112062 Melm1 - - 1 55.04 cM melanoma modifier 1 unknown 102638016 Mm.256146 XR_385491 Gm17382 - - 17 A3.3|17 13.6 cM predicted gene, 17382 ncRNA 71172 Mm.79094 4933415J04Rik - - 5|5 RIKEN cDNA 4933415J04 gene protein-coding 102635694 XR_383046 Gm32966 - - 14 A1|14 predicted gene, 32966 protein-coding 13660 Mm.30169 NM_010119 ENSMUSG00000024772 Ehd1 AA409636|Past1|RME-1 - 19 A|19 4.4 cM EH-domain containing 1 protein-coding 69962 Mm.27284 NM_027279 ENSMUSG00000041396 Mettl18 2810422O20Rik|C78571 - 1|1 H2.1 methyltransferase like 18 protein-coding 100861880 Mm.441727 NM_001270898 ENSMUSG00000091779 Gm21293 - - 10 D1|10 predicted gene, 21293 protein-coding 723879 NR_030275 ENSMUSG00000076122 Mir503 Mirn503|mmu-mir-503 - X|X A5 microRNA 503 ncRNA 100504209 Gm12351 - - 4|4 16.74 cM 60S ribosomal protein L37-like pseudo 111796 Iapls3-18 - - - intracisternal A particle, lymphocyte specific 3-18 other 219144 Mm.206566 NM_177337 ENSMUSG00000043157 Arl11 ARLTS1|C730007L20Rik - 14|14 D1 ADP-ribosylation factor-like 11 protein-coding 78569 Mm.160097 XR_383502 9630015K15Rik - - 14|14 D1 RIKEN cDNA 9630015K15 gene ncRNA 668796 Gm9367 EG668796 - 7|7 B5 ribosomal protein S7 pseudogene pseudo 384852 Gm5354 EG384852 - 8|8 C2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 230279 Mm.41523 NM_144905 ENSMUSG00000045917 Tmem268 6330416G13Rik|AW492431|bM230C2.2 - 4|4 C1 transmembrane protein 268 protein-coding 102637459 Gm34262 - - X|X predicted gene, 34262 pseudo 545234 Rpsa-ps8 EG545234|Gm5818 - 17 E2|17 ribosomal protein SA, pseudogene 8 pseudo 102637568 XR_375319 Gm34344 - - 2 H3|2 predicted gene, 34344 ncRNA 100038882 Mm.4950 NM_015783 ENSMUSG00000035692 Isg15 G1p2|IGI15|IP17|Irfp|UCRP - 4 E2|4 ISG15 ubiquitin-like modifier protein-coding 105246235 XR_876670 Gm41547 - - 17 A3.3|17 predicted gene, 41547 ncRNA 52344 Mm.156636 D4Ertd199e - - - DNA segment, Chr 4, ERATO Doi 199, expressed unknown 106170 D630050H08Rik AI256679 - - RIKEN cDNA D630050H08 gene protein-coding 61912 D3Mit305 - - 3 10.82 cM DNA Segment, Chr 3, Massachusetts Institute of Technology 305 unknown 70385 Mm.194368 NM_027411 ENSMUSG00000069910 Spdl1 1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99 - 11|11 A4 spindle apparatus coiled-coil protein 1 protein-coding 258461 Mm.377515 NM_146469 ENSMUSG00000095187 Olfr1381 MOR256-26 - 11|11 B1.2 olfactory receptor 1381 protein-coding 666603 Gm15740 EG666603 - 13|13 C1 vacuolar protein sorting 4a pseudogene pseudo 319634 Mm.108786 NM_176965 ENSMUSG00000050944 Efcab5 4930563A03Rik - 11|11 B5 EF-hand calcium binding domain 5 protein-coding 77294 9430064K01Rik - - 10|10 RIKEN cDNA 9430064K01 gene protein-coding 110938 Kcnd1-rs1 - - - potassium voltage-gated channel, Shal-related subfamily, member 1, related sequence 1 protein-coding 208431 Mm.23208 NM_001040459 ENSMUSG00000068270 Shroom4 D430043L16Rik|Gm724|Shrm4 - X|X A1.1 shroom family member 4 protein-coding 105242663 Gm38816 - - 6|6 predicted gene, 38816 ncRNA 105242842 XR_881803 Gm38939 - - 7 A1|7 predicted gene, 38939 ncRNA 226304 Mm.291110 NM_010342 ENSMUSG00000033774 Npbwr1 Gpr7|Nbpwr1 - 1|1 A1 neuropeptides B/W receptor 1 protein-coding 109523 Htas3 Ht3 - - hypothermia due to alcohol sensitivity 3 unknown 100463507 Gm20591 Cct1-2p - 17 A1|17 8.72 cM t-complex protein 1, pseudogene 2 pseudo 245000 Mm.212462 NM_019864 ENSMUSG00000032409 Atr - - 9|9 E3.3 ataxia telangiectasia and Rad3 related protein-coding 21210 T(5;14)2Gso T2Gso - - reciprocal translocation, Chr 5 and 14, Generoso 2 other 237887 Mm.341645 NM_181542 ENSMUSG00000072621 Slfn10-ps Slfn10|mFLJ00257 - 11|11 C schlafen 10, pseudogene protein-coding 110518 Prdx2-rs4 - - - peroxiredoxin 2, related sequence 4 protein-coding 620946 Gm6192 - - 19 A|19 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 381463 Mm.331269 NM_198658 ENSMUSG00000048938 Nr1h5 Fxrb - 3|3 F2.2 nuclear receptor subfamily 1, group H, member 5 protein-coding 432789 Gm5452 EG432789 - 13|13 C3 lactate dehydrogenase A pseudogene pseudo 105244035 Gm39720 - - 1|1 predicted gene, 39720 ncRNA 102635210 XR_380834 Gm32605 - - 10 D2|10 predicted gene, 32605 ncRNA 18190 Mm.329616 NM_020253 ENSMUSG00000033768 Nrxn2 6430591O13Rik|mKIAA0921 - 19 A|19 neurexin II protein-coding 69788 Mm.381492 NR_073433 ENSMUSG00000104986 1600023N17Rik AV119442 - 5|5 B3 RIKEN cDNA 1600023N17 gene ncRNA 16008 Mm.141936 NM_008342 ENSMUSG00000039323 Igfbp2 AI255832|IBP-2|Igfbp-2|mIGFBP-2 - 1 C3|1 36.94 cM insulin-like growth factor binding protein 2 protein-coding 100534275 Gm14401 - - 2|2 H4 ethanol induced 1 pseudogene pseudo 54381 Mm.158251 NM_018755 ENSMUSG00000039007 Cpq 1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp - 15|15 B3.1 carboxypeptidase Q protein-coding 13610 Mm.136736 NM_010101 ENSMUSG00000067586 S1pr3 AI132464|Edg3|Lpb3|S1p3 - 13|13 A5 sphingosine-1-phosphate receptor 3 protein-coding 100038416 Mm.44438 Gm10643 - - - predicted gene 10643 unknown 666242 Prdx2-rs3 PrxII3|Tdpx-ps2 - 4 E1|4 78.09 cM peroxiredoxin 2, related sequence 3 pseudo 277468 Mm.44662 NM_001012305 ENSMUSG00000036949 Slc39a12 AW046938|Gm731 - 2|2 A2 solute carrier family 39 (zinc transporter), member 12 protein-coding 434232 Mm.458509 NM_001081446 ENSMUSG00000073856 Iqck A230094G09Rik - 7|7 F2 IQ motif containing K protein-coding 68140 Mm.25843 NM_001081145 ENSMUSG00000049232 Tigd2 3632410O17Rik - 6|6 B3 tigger transposable element derived 2 protein-coding 217924 Rpl7a-ps2 EG217924|Gm4809 - 12|12 F2 ribosomal protein L7A, pseudogene 2 pseudo 105956 AU015438 - - - expressed sequence AU015438 unknown 102636915 XR_374263 Gm33856 - - 2 B|2 predicted gene, 33856 ncRNA 102635240 XR_391181 Gm32630 - - 7 A2|7 predicted gene, 32630 ncRNA 211770 Mm.40298 NM_144549 ENSMUSG00000032501 Trib1 A530090O15Rik|TRB-1|Trb1 - 15|15 D1 tribbles pseudokinase 1 protein-coding 433198 Mm.329519 XR_877520 LOC433198 - - 18|18 E2 uncharacterized LOC433198 unknown 66601 Mm.25138 NM_025655 ENSMUSG00000020839 Tmigd1 2010002A20Rik|Tmigd - 11|11 B5 transmembrane and immunoglobulin domain containing 1 protein-coding 102639099 XR_382812 Gm35493 - - 13 D1|13 predicted gene, 35493 ncRNA 108167626 XR_001778948 Gm46093 - - 1 C3|1 predicted gene, 46093 ncRNA 100499529 NR_037312 ENSMUSG00000093120 Mir3474 mir-3474|mmu-mir-3474 - 2 H1|2 78.72 cM microRNA 3474 ncRNA 330277 Mm.87624 NM_207258 ENSMUSG00000039742 Fam71f1 GARI-L1|Gm764|NYD-SP18 - 6|6 A3.3 family with sequence similarity 71, member F1 protein-coding 52366 Mm.381767 D8Ertd503e - - 8 65.44 cM DNA segment, Chr 8, ERATO Doi 503, expressed unknown 21812 Mm.197552 NM_009370 ENSMUSG00000007613 Tgfbr1 ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI - 4 B1|4 26.02 cM transforming growth factor, beta receptor I protein-coding 402735 Mm.38066 B230114P17Rik - - 10|10 RIKEN cDNA B230114P17 gene protein-coding 547171 Gm6024 EG547171 - X|X A3.3 3-phosphoglycerate dehydrogenase pseudogene pseudo 111955 Iap3rc17 - - - intracisternal A-type particle, U3 region, SINE repeat c-17 other 102635250 Gm21864 - - Y|Y predicted gene, 21864 protein-coding 102639828 XM_017318667 Gm36049 - - X F4|X predicted gene, 36049 protein-coding 102465758 NR_106108 ENSMUSG00000105847 Gm25500 Mir7650|mmu-mir-7650 - 9|9 A2 predicted gene, 25500 ncRNA 100041199 Gm3196 - - 5|5 E5 predicted gene 3196 pseudo 60878 D7Mit40 - - 7 62.01 cM DNA segment, Chr 7, Massachusetts Institute of Technology 40 unknown 108168661 XM_017318872 LOC108168661 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 258939 Mm.377759 NM_146937 ENSMUSG00000054666 Olfr63 M4|MOR267-1 - 17|17 B1 olfactory receptor 63 protein-coding 20724 Mm.268618 NM_009257 ENSMUSG00000067006 Serpinb5 1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin - 1|1 E2.1 serine (or cysteine) peptidase inhibitor, clade B, member 5 protein-coding 622213 Gm6298 EG622213 - X|X F1 predicted gene 6298 pseudo 100035598 Obsty5 - - - obesity 5 unknown 102638125 XR_389060 Gm20511 - - 11 E1|11 66.74 cM predicted gene 20511 ncRNA 20913 Mm.207203 NM_011505 ENSMUSG00000020546 Stxbp4 6030470M02Rik|Synip - 11|11 D syntaxin binding protein 4 protein-coding 69922 Mm.285351 NM_027260 ENSMUSG00000064090 Vrk2 2810003O05Rik|AI447698 - 11|11 A3.3 vaccinia related kinase 2 protein-coding 110673973 LOC110673973 - - - Cyp11b2 promoter biological-region 215728 Mm.145928 NM_001033977 ENSMUSG00000071434 9230019H11Rik - - 10|10 A1 RIKEN cDNA 9230019H11 gene protein-coding 100035242 Mtxe8 - - - methotrextate efficacy 8 unknown 62271 D19Mit24 - - 19 38.16 cM DNA segment, Chr 19, Massachusetts Institute of Technology 24 unknown 102638879 Gm12624 - - 11 B2|11 37.81 cM predicted gene 12624 pseudo 19450 Rb(1.3)1Ei Rb1Ei - - Robertsonian translocation, Chr 1 and 3, Eicher 1 other 13487 Mm.490454 NM_021353 ENSMUSG00000001225 Slc26a3 9030623B18Rik|9130013M11Rik|AV376035|Dra - 12 A2|12 13.45 cM solute carrier family 26, member 3 protein-coding 114672 Mm.206718 XR_002317 1700007E05Rik - - 16|16 B2 RIKEN cDNA 1700007E05 gene unknown 62286 D19Mit54 - - 19 47.79 cM DNA segment, Chr 19, Massachusetts Institute of Technology 54 unknown 17184 Mm.215034 NM_010771 ENSMUSG00000037236 Matr3 1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723 - 18 B2|18 19.14 cM matrin 3 protein-coding 68197 Mm.334031 NM_024220 ENSMUSG00000030647 Ndufc2 1810004I06Rik|2010300P09Rik|G1|R75094 - 7|7 E1 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 protein-coding 105247292 XR_882353 LOC105247292 - - - uncharacterized LOC105247292 ncRNA 595139 Mm.405662 NR_033228 E030024N20Rik 9030417F11Rik|Ppia-ps8 - 19|19 A peptidylprolyl isomerase A pseudogene 8 pseudo 100579149 Mm.424930 Gm17416 Defb19 - 2 75.3 cM predicted gene, 17416 protein-coding 100041562 Mm.448008 NR_152196 Gm14762 - - X|X C1 predicted gene 14762 ncRNA 432491 Gm5426 EG432491 - 10|10 C2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene pseudo 246694 Mm.379442 NM_178742 ENSMUSG00000014418 Hps5 AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2 - 7 B3|7 30.56 cM HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 protein-coding 105242434 Gm38703 - - 13|13 predicted gene, 38703 protein-coding 106345154 Gm45931 - - 5 E5|5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 pseudogene pseudo 100038448 Mm.21687 Gm10840 - - - predicted gene 10840 protein-coding 105245631 XR_873957 ENSMUSG00000086649 Gm15286 - - 13 D2.2|13 63.34 cM predicted gene 15286 ncRNA 11551 Mm.235195 NM_007417 ENSMUSG00000033717 Adra2a AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR - 19 D2|19 49.04 cM adrenergic receptor, alpha 2a protein-coding 111475 Gln3-4 - - - GLN retrotransposon family 3-4 other 259115 Mm.223485 NM_147111 ENSMUSG00000066268 Olfr586 MOR8-2|MOR8-7 - 7|7 E3 olfactory receptor 586 protein-coding 545548 Mm.387664 NM_001039594 ENSMUSG00000054325 Lce3a EG545548 - 3 F1|3 late cornified envelope 3A protein-coding 110120534 LOC110120534 - - - VISTA enhancer mm1112 biological-region 110383 Carg1 - - - Candida albicans resistance gene 1 protein-coding 108168225 XM_017316817 Gm26513 - - 15 F1|15 predicted gene, 26513 protein-coding 105243315 XR_879314 Gm39272 - - 8 E1|8 predicted gene, 39272 ncRNA 100124432 NR_030549 ENSMUSG00000076972 Mir193b Mir193|Mirn193b|mir-193b - 16 A1|16 microRNA 193b ncRNA 100101491 Trav15d-2-dv6d-2 Gm10891|Tradv15d-2|Trav15d-2/dv6d-2 - 14 C2|14 T cell receptor alpha variable 15D-2-DV6D-2 other 243277 Mm.440501 NM_177734 ENSMUSG00000044017 Adgrd1 E230012M21Rik|Gpr133 - 5|5 G1.3 adhesion G protein-coupled receptor D1 protein-coding 61454 D6Mit177 - - 6 42.17 cM DNA segment, Chr 6, Massachusetts Institute of Technology 177 unknown 85060 D2Mit79 - - 2 15.15 cM DNA segment, Chr 2, Massachusetts Institute of Technology 79 unknown 433278 Mm.26006 NM_001033904 ENSMUSG00000041722 Khdc1c Khdc1b - 1|1 A4 KH domain containing 1C protein-coding 108168348 XR_001782216 Gm46602 - - 17 E2|17 predicted gene, 46602 ncRNA 330323 Mm.268997 NM_177883 ENSMUSG00000038022 Mindy4 C330043M08Rik|Fam188b|Gm1406 - 6|6 B3 MINDY lysine 48 deubiquitinase 4 protein-coding 105244571 XR_867694 Gm40164 - - 3 H2|3 predicted gene, 40164 ncRNA 100041483 LOC100041483 - - - protein TCL1B3 protein-coding 109279844 LOC109279844 - - - Epha4 upstream enhancer in rhombomeres biological-region 100040171 XM_011251071 Gm20827 - - Y|Y B predicted gene, 20827 protein-coding 19133 Mm.291370 NM_008938 ENSMUSG00000023978 Prph2 AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds - 17 C|17 22.91 cM peripherin 2 protein-coding 102638689 Gm29115 - - Y|Y predicted gene 29115 protein-coding 623875 Gm1135 - - - uncharacterized LOC623875 protein-coding 102640611 Gm21896 - - Y|Y predicted gene, 21896 protein-coding 140743 Mm.274727 NM_080726 ENSMUSG00000022176 Rem2 AW411893 - 14|14 C2 rad and gem related GTP binding protein 2 protein-coding 14567 Mm.205830 NM_010273 ENSMUSG00000015291 Gdi1 GDIA|GDIalpha - X A7.3|X 37.97 cM guanosine diphosphate (GDP) dissociation inhibitor 1 protein-coding 105245264 XR_871955 Gm40742 - - 10 C2|10 predicted gene, 40742 ncRNA 100416328 Gm16128 - - 10|10 B4 ribosomal protein 10 pseudogene pseudo 51903 D2Ertd554e - - - DNA segment, Chr 2, ERATO Doi 554, expressed unknown 19126 Mm.6250 NM_008935 ENSMUSG00000029086 Prom1 4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1 - 5|5 B3 prominin 1 protein-coding 85187 D18Mit85 - - 18 15.28 cM DNA segment, Chr 18, Massachusetts Institute of Technology 85 unknown 56535 Mm.282711 NM_019961 ENSMUSG00000019809 Pex3 1700014F15Rik|2810027F19Rik|2900010N04Rik - 10|10 A2 peroxisomal biogenesis factor 3 protein-coding 100124478 NR_030536 ENSMUSG00000096628 Mir871 Mirn871|mir-871|mmu-mir-871 - X A7.1|X microRNA 871 ncRNA 104215 Mm.826 NM_145491 ENSMUSG00000024143 Rhoq Arhq|TC10A|Tc10 - 17 E4|17 56.9 cM ras homolog family member Q protein-coding 100384871 Gm12630 - - 4 C4|4 40.69 cM ribosomal protein L7A pseudogene pseudo 546272 NM_001100444 ENSMUSG00000084063 Gm5934 EG546272 - X|X A2 predicted gene 5934 protein-coding 16240 In(12)25Rk-p In(12)25Rk|In25Rk - - inversion, Chr 12, Roderick 25, proximal other 105243524 XR_871142 Gm39420 - - 9 F1|9 predicted gene, 39420 ncRNA 109279954 LOC109279954 Mm418 - - VISTA enhancer mm418 biological-region 73287 Mm.141830 NM_028491 ENSMUSG00000019945 Cabcoco1 1700040L02Rik - 10|10 B5.2 ciliary associated calcium binding coiled-coil 1 protein-coding 102465777 NR_106139 ENSMUSG00000106336 Mir129b mmu-mir-129b - 2|2 E1 microRNA 129b ncRNA 102465549 NR_105875 ENSMUSG00000098562 Mir6910 Gm27763|mmu-mir-6910 - 10|10 C1 microRNA 6910 ncRNA 435333 Mm.464351 LOC435333 - - 12|12 F2 immunoglobulin heavy chain-like other 62680 D16Mit110 - - 16 21.41 cM DNA segment, Chr 16, Massachusetts Institute of Technology 110 unknown 112026 Lwq1 - - - liver weight QTL 1 unknown 100040769 Mm.126401 NR_144495 Gm15506 - - 7 E1|7 predicted gene 15506 ncRNA 219065 Mm.303179 A630038E17Rik A430070I15 - 14|14 C2 RIKEN cDNA A630038E17 gene other 100040719 Gm14599 - - X A5|X X-linked lymphocyte-regulated complex pseudogene pseudo 103333 AU014973 - - - expressed sequence AU014973 unknown 61774 D3Mit273 - - 3 15.98 cM DNA segment, Chr 3, Massachusetts Institute of Technology 273 unknown 545641 Mm.216028 NR_040659 ENSMUSG00000085022 Gm5860 EG545641 - 4|4 C3 predicted gene 5860 ncRNA 97928 C85363 - - - expressed sequence C85363 unknown 102632663 XR_390945 Gm30681 - - 4 E1|4 predicted gene, 30681 ncRNA 16369 Mm.24486 NM_010571 ENSMUSG00000047182 Irs3 AA408304 - 5|5 G2 insulin receptor substrate 3 protein-coding 74183 Mm.431343 NM_172417 ENSMUSG00000078486 Perm1 2310042D19Rik - 4|4 E2 PPARGC1 and ESRR induced regulator, muscle 1 protein-coding 71452 Mm.141054 NM_027799 ENSMUSG00000020864 Ankrd40 1110011C06Rik|5530600A18Rik|Gcap15 - 11|11 D ankyrin repeat domain 40 protein-coding 102639707 XR_376600 Gm35957 - - 4 D2.1|4 predicted gene, 35957 ncRNA 98363 Mm.247951 NM_028889 ENSMUSG00000026255 Efhd1 4931430I01Rik|AI452351|PP3051|mitocalcin - 1|1 C5 EF hand domain containing 1 protein-coding 17420 Mm.246750 NM_008612 ENSMUSG00000021103 Mnat1 E130115E11Rik|MAT1|P36 - 12|12 C3 menage a trois 1 protein-coding 433158 Gm5500 EG433158|Gm1825 - 18|18 A1 src homology 2 domain-containing transforming protein C1 pseudogene pseudo 108253 Gapdh-ps5 Gapd-ps5|domes5 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 5 pseudo 668910 Gm14056 - - 2|2 F3 ribosomal protein 10 pseudogene pseudo 100418210 Mm.118400 Gm19075 - - 8|8 A2 electron transferring flavoprotein, alpha polypeptide pseudogene pseudo 100417838 Gm18859 - - 13|13 A2 predicted gene, 18859 pseudo 110102 Rfv2 Rfv-2 - - recovery from Friend virus 2 protein-coding 112163554 Mm.403999 BE688013 - - - expressed sequence BE688013 protein-coding 100039612 Gm15089 - - X|X F3 predicted gene 15089 pseudo 108485 Ms55 MMS55 - - minisatellites detected by probe MMS55 other 100036394 Vmmt1 - - - vertebral morphology and mechanical traits 1 unknown 75608 Mm.262480 NM_029362 ENSMUSG00000038467 Chmp4b 2010012F05Rik|C76846|Snf7-2 - 2|2 H1 charged multivesicular body protein 4B protein-coding 75335 Mm.389776 4930549O18Rik - - 6|6 RIKEN cDNA 4930549O18 gene protein-coding 76954 Mm.252009 NM_029811 ENSMUSG00000031024 St5 2010004M01Rik|2610305K15Rik - 7 E3|7 57.27 cM suppression of tumorigenicity 5 protein-coding 71393 Mm.292712 NM_027782 ENSMUSG00000021752 Kctd6 5430433B02Rik|AU044285 - 14|14 A1 potassium channel tetramerisation domain containing 6 protein-coding 320692 Mm.427378 NR_040766 ENSMUSG00000097073 9430037G07Rik - - 9|9 E3.1 RIKEN cDNA 9430037G07 gene ncRNA 434186 Gm16478 EG546971|EG668777|Gm6005 - 7|7 B4 retinoblastoma binding protein 6 pseudogene pseudo 319417 D930007M16Rik - - 8|8 RIKEN cDNA D930007M16 gene protein-coding 110206 Mlvi2 Mlvi-2 - 15 A2-B1|15 Moloney-MuLV integration site 2 protein-coding 70309 2610005G05Rik - - 16|16 RIKEN cDNA 2610005G05 gene protein-coding 629709 Gm6997 EG629709 - 14|14 D3 mitochondrial ribosomal protein L22 pseudogene pseudo 68082 Mm.306818 NM_024438 ENSMUSG00000027001 Dusp19 5930436K22Rik|C79103|SKRP1|TS-DSP1 - 2|2 C3 dual specificity phosphatase 19 protein-coding 17063 Mm.3177 NM_010739 ENSMUSG00000022824 Muc13 114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1 - 16|16 B3 mucin 13, epithelial transmembrane protein-coding 102633416 Gm31248 - - 5|5 predicted gene, 31248 protein-coding 100504516 Mm.446605 Gm20262 - - 10|10 16.46 cM predicted gene, 20262 unknown 78797 Mm.40020 NM_178239 ENSMUSG00000006471 Ndor1 4930447P04Rik|NR1|Ndor|Tg(UBC-cre/ERT2)1Ejb|Ubc-cre - 2|2 A3 NADPH dependent diflavin oxidoreductase 1 protein-coding 62517 D11Mit127 - - 11 68.89 cM DNA segment, Chr 11, Massachusetts Institute of Technology 127 unknown 675463 Gm9643 - - 15 B3.1|15 predicted gene 9643 pseudo 74473 Mm.399575 NR_045458 4933433H22Rik - - 17|17 E4 RIKEN cDNA 4933433H22 gene ncRNA 105247057 XR_880887 Gm42232 - - 5 A3|5 predicted gene, 42232 ncRNA 105245525 Gm40971 - - 13|13 predicted gene, 40971 ncRNA 435362 Gm5664 EG435362 - 13|13 B2 predicted gene 5664 pseudo 629581 NM_001177390 Gm6985 EG629581 - X|X C3 predicted pseudogene 6985 pseudo 59020 Mm.489677 NM_021517 ENSMUSG00000038298 Pdzk1 1700023D20Rik|2610507N21Rik|4921513F16Rik|AI267131|AI314638|AL022680|D3Ertd537e|NHERF-3|Pdzd1|mPDZK1|naPi-Cap1 - 3|3 F2.1 PDZ domain containing 1 protein-coding 100043817 Mm.404276 NR_152204 Gm4668 - - 9 F3|9 predicted gene 4668 ncRNA 100862204 LOC100862204 - - X C1 60S ribosomal protein L7a pseudogene pseudo 280287 Mm.458301 NM_178260 ENSMUSG00000116158 Kiss1 kisspeptin|metastatin - 1|1 E4 KiSS-1 metastasis-suppressor protein-coding 100040331 Rpl36a-ps2 Gm2718 - 3 H2|3 ribosomal protein L36A, pseudogene 2 pseudo 21109 T(2;10)14Ad T14Ad - - reciprocal translocation, Chr 2 and 10, Adler 14 other 105446 Mm.390685 NM_177992 ENSMUSG00000002326 Gmpr2 1810008P16Rik|5730544D12Rik|AA959850|GMPR 2 - 14|14 C3 guanosine monophosphate reductase 2 protein-coding 112082 Swq1 - - - spleen weight QTL 1 unknown 636847 Gm12912 - - 4|4 C3 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 108417 Xmmv24 Env-24|Xmmv-24 - - xenotropic-MCF leukemia virus 24 other 62558 D12Mit113 - - - DNA segment, Chr 12, Massachusetts Institute of Technology 113 unknown 68176 Mm.76166 NM_026597 ENSMUSG00000042106 Fam212a 6230427J02Rik|Inka1 - 9|9 F1 family with sequence similarity 212, member A protein-coding 69412 Mm.259735 NR_045824 ENSMUSG00000019865 1700016L04Rik - - 10|10 A2 RIKEN cDNA 1700016L04 gene ncRNA 75162 Mm.60874 NR_045374 4930545E07Rik - - 18|18 A1 RIKEN cDNA 4930545E07 gene ncRNA 76877 Mm.133593 NM_029781 ENSMUSG00000020175 Rab36 6330593L16Rik|AW047545 - 10|10 C1 RAB36, member RAS oncogene family protein-coding 17842 Mm.250267 NM_010845 ENSMUSG00000066154 Mup3 MUP15|MUPIII|Mup-3|Mup25 - 4|4 B3 major urinary protein 3 protein-coding 62996 D12Mit274 - - 12 30.23 cM DNA segment, Chr 12, Massachusetts Institute of Technology 274 unknown 72406 Mm.396410 2310081O03Rik - - 4|4 RIKEN cDNA 2310081O03 gene protein-coding 19177 Mm.389251 NM_011187 ENSMUSG00000026750 Psmb7 AU020723|MC14 - 2 B|2 24.42 cM proteasome (prosome, macropain) subunit, beta type 7 protein-coding 102465170 NR_105753 ENSMUSG00000098539 Mir133c Gm27865|mmu-mir-133c - 2|2 B microRNA 133c ncRNA 100416290 Gm15539 - - 16|16 A1 predicted gene 15539 pseudo 105245739 XR_874564 ENSMUSG00000115659 Gm41138 - - 14 C1|14 predicted gene, 41138 ncRNA 27672 D11Moh26 - - 11 59.57 cM DNA segment, Chr 11, KL Mohlke 26 unknown 60750 D1Mit96 - - 1 54.7 cM DNA segment, Chr 1, Massachusetts Institute of Technology 96 unknown 102634264 Gm31891 - - 5 G2|5 predicted gene, 31891 pseudo 666446 Gm8110 EG666446 - 8|8 A2 testis expressed gene 24 pseudogene pseudo 623428 Gm6429 EG623428 - X|X E1 predicted gene 6429 pseudo 359911 DXMgc74 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 74 unknown 12745 Mm.358581 NM_009904 ENSMUSG00000002190 Clgn 4930459O04Rik|A2/6|AI528775|Cln - 8 C2|8 39.97 cM calmegin protein-coding 235323 Mm.21630 NM_175482 ENSMUSG00000032267 Usp28 9830148O20Rik|AU022237|mKIAA1515 - 9|9 A5.3 ubiquitin specific peptidase 28 protein-coding 16252 In(15)21Rk-p In(15)21Rk|In21Rk - - inversion, Chr 15, Roderick 21, proximal other 105244691 Mm.404635 Gm40253 - - 4|4 predicted gene, 40253 ncRNA 102881 AI256676 - - - expressed sequence AI256676 unknown 67057 Mm.4714 NM_024189 ENSMUSG00000022634 Yaf2 2810021M11Rik - 15|15 E3 YY1 associated factor 2 protein-coding 100126090 Swqnd1 - - - spleen weight QTL 1 unknown 13801 Mm.8014 NM_017468 ENSMUSG00000029286 Enam abte - 5|5 E1 enamelin protein-coding 606728 Gm6080 EG606728|Ppia-ps13_1282.1 - 13|13 D1 peptidylprolyl isomerase A pseudogene 13_1282.1 pseudo 108168872 XR_001783844 Gm46805 - - 3 D|3 predicted gene, 46805 ncRNA 22754 Mm.5060 NM_009566 ENSMUSG00000031374 Zfp92 - - X A7.3|X 37.31 cM zinc finger protein 92 protein-coding 105244861 XR_872686 Gm40394 - - 12 A3|12 predicted gene, 40394 ncRNA 105245986 XR_875448 Gm41354 - - 15 D3|15 predicted gene, 41354 ncRNA 52421 Mm.444452 D4Ertd681e - - 4 45.52 cM DNA segment, Chr 4, ERATO Doi 681, expressed protein-coding 259105 Mm.424092 NM_147101 ENSMUSG00000073977 Olfr549 MOR31-3 - 7|7 E3 olfactory receptor 549 protein-coding 624957 NM_001281531 ENSMUSG00000083616 H2afb3 EG624957|H2A.Bbd3|H2afb3-ps - X|X E2 H2A histone family, member B3 protein-coding 102440 Mm.476814 AI115463 - - - expressed sequence AI115463 unknown 100503636 Mm.209078 NR_040577 1700123M08Rik 1600025K15Rik - 4|4 A1 RIKEN cDNA 1700123M08 gene ncRNA 12937 Mm.308500 NM_007767 ENSMUSG00000103707 Pcdha6 CNR|Cnr2|Crnr2 - 18|18 B2-B3 protocadherin alpha 6 protein-coding 226043 Mm.272127 NM_146097 ENSMUSG00000024878 Cbwd1 AV349248|BC018472 - 19|19 B COBW domain containing 1 protein-coding 56070 Mm.270511 NM_001039474 ENSMUSG00000024498 Tcerg1 2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144 - 18|18 B3 transcription elongation regulator 1 (CA150) protein-coding 105245129 XR_871570 Gm40623 - - 10 B1|10 predicted gene, 40623 ncRNA 62051 DXMit234 - - X 62.83 cM DNA Segment, Chr X, Massachusetts Institute of Technology 234 unknown 62293 D19Mit66 - - 19 34.8 cM DNA segment, Chr 19, Massachusetts Institute of Technology 66 unknown 622469 Gm12966 - - 4|4 D2.2 serine/arginine-rich splicing factor 5 pseudogene pseudo 211619 Rpl48-ps1 EG211619|Gm4771 - 10|10 B4 ribosomal protein L48, pseudogene 1 pseudo 116888 Eae14 - - 8 22.16 cM experimental allergic encephalomyelitis susceptibility 14 unknown 100124492 NR_030537 ENSMUSG00000077896 Mir879 Mirn879|mir-879|mmu-mir-879 - 5 A1|5 microRNA 879 ncRNA 258321 Mm.391461 NM_146324 ENSMUSG00000050251 Olfr809 MOR108-4 - 10|10 D3 olfactory receptor 809 protein-coding 66202 Mm.268307 NM_025419 ENSMUSG00000032551 1110059G10Rik - - 9|9 F4 RIKEN cDNA 1110059G10 gene protein-coding 77446 Mm.245741 NM_172934 ENSMUSG00000075254 Heg1 4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629 - 16|16 B3 heart development protein with EGF-like domains 1 protein-coding 227622 Mm.261780 NM_153557 ENSMUSG00000047617 Paxx D930050G13Rik - 2|2 A3 non-homologous end joining factor protein-coding 215378 Mm.441817 NM_153539 ENSMUSG00000035131 Brinp3 B830045N13Rik|Fam5c - 1 F|1 63.24 cM bone morphogenetic protein/retinoic acid inducible neural specific 3 protein-coding 574429 Mm.296754 NM_001029893 ENSMUSG00000070799 Psg26 EG574429|cea14 - 7|7 A3 pregnancy-specific glycoprotein 26 protein-coding 231834 Mm.27098 NM_172277 ENSMUSG00000029560 Snx8 B130023O14Rik - 5|5 G2 sorting nexin 8 protein-coding 100041089 Mm.387232 XR_106150 Gm3134 Sall1os - 8 C3|8 predicted gene 3134 ncRNA 75686 Mm.305810 NM_029385 ENSMUSG00000032565 Nudt16 2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783 - 9|9 F1 nudix (nucleoside diphosphate linked moiety X)-type motif 16 protein-coding 105246867 XR_879824 Gm42075 - - 11 B1.2|11 predicted gene, 42075 ncRNA 51953 D19Ertd79e - - - DNA segment, Chr 19, ERATO Doi 79, expressed unknown 20977 Mm.223674 NM_009305 ENSMUSG00000031144 Syp A230093K24Rik|AI848995|Syn|p38 - X A1.1|X 3.44 cM synaptophysin protein-coding 106970 Mm.312170 AU015140 - - - expressed sequence AU015140 unknown 62616 D13Mit169 - - 13 49.22 cM DNA segment, Chr 13, Massachusetts Institute of Technology 169 unknown 102634650 XR_382252 Gm32184 - - 13 A4|13 predicted gene, 32184 ncRNA 111804 Iapls3-31 - - - intracisternal A particle, lymphocyte specific 3-31 other 68070 Mm.423205 NM_001081064 ENSMUSG00000022197 Pdzd2 4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300 - 15|15 A1 PDZ domain containing 2 protein-coding 72333 Mm.29933 NM_001081390 ENSMUSG00000058056 Palld 2410003B16Rik|6030492A02 - 8|8 B3.1 palladin, cytoskeletal associated protein protein-coding 13806 Mm.70666 NM_023119 ENSMUSG00000063524 Eno1 0610008I15|AL022784|Eno-1|MBP-1 - 4 E2|4 81.24 cM enolase 1, alpha non-neuron protein-coding 108167946 XM_017315280 Gm46306 - - 12 A1.2|12 predicted gene, 46306 protein-coding 67393 Mm.94560 NM_133687 ENSMUSG00000046668 Cxxc5 4930415K17Rik - 18|18 B2 CXXC finger 5 protein-coding 108689 Mm.218048 NM_175360 ENSMUSG00000042694 Stn1 0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32 - 19|19 C3 STN1, CST complex subunit protein-coding 100036348 Hctq1 - - 3 37.83 cM hematocrit QTL 1 unknown 102633680 Gm31446 - - 7|7 predicted gene, 31446 ncRNA 102635459 XR_378852 Gm32791 - - 8 A3|8 predicted gene, 32791 ncRNA 14191 Mm.271665 NM_010208 ENSMUSG00000028874 Fgr - - 4 D2.3|4 66.11 cM FGR proto-oncogene, Src family tyrosine kinase protein-coding 108167467 XR_001778317 Gm46005 - - 7 F5|7 predicted gene, 46005 ncRNA 102640041 XR_386645 Gm36209 - - 19 C1|19 predicted gene, 36209 ncRNA 13665 Mm.196220 NM_026114 ENSMUSG00000021116 Eif2s1 0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha - 12|12 C3 eukaryotic translation initiation factor 2, subunit 1 alpha protein-coding 402757 Mm.150255 NR_045314 9830166K06Rik - - 19|19 A RIKEN cDNA 9830166K06 gene ncRNA 105246359 XR_877153 Gm41658 - - 18 A1|18 predicted gene, 41658 ncRNA 100036120 Mohg5 - - - modifier of hg 5 unknown 674371 Gm9621 - - 9|9 E3.3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 18542 Mm.262345 NM_008788 ENSMUSG00000029718 Pcolce Astt-2|Astt2|P14|PCPE-1 - 5 G2|5 76.59 cM procollagen C-endopeptidase enhancer protein protein-coding 387186 NR_029577 ENSMUSG00000105497 Mir191 Mirn191|mir-191|mmu-mir-191 - 9|9 F2 microRNA 191 ncRNA 666680 Mm.422212 NR_004433 Gm8234 AU022133 - 3|3 D spermine synthase pseudogene pseudo 12445 Mm.27291 NM_007632 ENSMUSG00000034165 Ccnd3 9230106B05Rik|AA682053|AL024085|AW146355|C78795 - 17 C|17 23.37 cM cyclin D3 protein-coding 235439 Mm.244179 NM_145617 ENSMUSG00000038664 Herc1 2810449H11Rik|B230218H07|D130015N03Rik|tbl - 9|9 C HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 27911 D16Ium54 - - - DNA segment, Chr 16, Indiana University Medical 54 unknown 228852 Mm.150540 NM_153089 ENSMUSG00000037754 Ppp1r16b ANKRD4|C130078N17Rik|TIMAP|Wdt4 - 2|2 H1 protein phosphatase 1, regulatory (inhibitor) subunit 16B protein-coding 546695 Gm16519 - - 17|17 E1.3 ribosomal protein L12 pseudogene pseudo 102636901 XR_376772 ENSMUSG00000105299 Gm33847 Gm43639 - 5 A1|5 predicted gene, 33847 ncRNA 63015 D19Mit137 - - 19 54.6 cM DNA Segment, Chr 19, Massachusetts Institute of Technology 137 unknown 73614 Mm.50505 NM_001185002 ENSMUSG00000050197 Rhox13 1700123J19Rik - X|X A3.3 reproductive homeobox 13 protein-coding 13846 Mm.34533 NM_010144 ENSMUSG00000029710 Ephb4 AI042935|Htk|MDK2|Myk1|Tyro11|b2b2412Clo - 5|5 G2 Eph receptor B4 protein-coding 432577 Gm12712 - - 11|11 B4 predicted gene 12712 pseudo 258755 Mm.377677 NM_146760 ENSMUSG00000051172 Olfr672 MOR32-4|Ors46 - 7|7 E3 olfactory receptor 672 protein-coding 20505 Mm.276355 NM_011392 ENSMUSG00000021490 Slc34a1 NaPi-IIa|Npt2|Npt2a|Slc17a2 - 13 B1|13 29.81 cM solute carrier family 34 (sodium phosphate), member 1 protein-coding 72918 2900019E01Rik - - 15|15 RIKEN cDNA 2900019E01 gene protein-coding 56427 Mm.383207 NM_019756 ENSMUSG00000020513 Tubd1 4930550G19Rik|Tubd - 11|11 C tubulin, delta 1 protein-coding 62001 D8Mit342 - - 8 36.61 cM DNA segment, Chr 8, Massachusetts Institute of Technology 342 unknown 211922 Mm.260512 NM_145969 ENSMUSG00000040818 Dennd6a Fam116a - 14|14 A3 DENN/MADD domain containing 6A protein-coding 107765 Mm.10279 NM_013468 ENSMUSG00000024803 Ankrd1 Alrp|CARP|Crap|MARP1 - 19|19 C2 ankyrin repeat domain 1 (cardiac muscle) protein-coding 11487 Mm.3037 NM_007399 ENSMUSG00000054693 Adam10 1700031C13Rik|MADM|kuz|kuzbanian - 9 D|9 39.53 cM a disintegrin and metallopeptidase domain 10 protein-coding 387353 Mm.377914 NM_207028 ENSMUSG00000048284 Tas2r126 T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35 - 6|6 B2.1 taste receptor, type 2, member 126 protein-coding 114733 Skull25 QTL-S17.2 - 17 17.98 cM skull morphology 25 unknown 628293 Igkv11-106 EG628293|Gm6865|ia11 - 6|6 C1 immunoglobulin kappa variable 11-106 pseudo 15150 Hc19 Cen19 - - heterochromatin, Chr 19 other 105247160 XR_881393 Gm42310 - - 4 C4|4 predicted gene, 42310 ncRNA 359982 DXMgc119 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 119 unknown 258458 Mm.377512 NM_146466 ENSMUSG00000050158 Olfr165 MOR279-1 - 16|16 A3 olfactory receptor 165 protein-coding 102634328 XR_380626 Gm31936 - - 10 C1|10 predicted gene, 31936 ncRNA 100041874 Mm.350858 NM_001270842 ENSMUSG00000079364 Gm3558 - - 14 A1|14 predicted gene 3558 protein-coding 108168828 XR_001783609 Gm13218 - - 2 A1|2 6.46 cM predicted gene 13218 ncRNA 66392 Mm.5099 NM_025532 ENSMUSG00000069258 Prl2b1 2310047B08Rik|Ghd12|PLP-K|Plpk|Prlpk|mPLP-K - 13 A3.1|13 12.43 cM prolactin family 2, subfamily b, member 1 protein-coding 100416405 Gm18099 - - 6|6 B3 ribosomal protein L17 pseudogene pseudo 100416509 Gm18137 - - 8|8 C3 zinc finger protein 46 pseudogene pseudo 102631540 XR_384485 Gm29852 - - 15 F3|15 predicted gene, 29852 ncRNA 99104 Mm.205341 Gm14290 - - - predicted gene 14290 protein-coding 672187 Gm9551 - - 1|1 C3 ribosomal protein L7A pseudogene pseudo 213233 Mm.296902 NM_145391 ENSMUSG00000038213 Tapbpl BC017613|TAPBPL-R|Tapbplr - 6|6 F2 TAP binding protein-like protein-coding 671410 Mm.348567 Gm9534 - - 5|5 A3 predicted gene 9534 pseudo 231866 Mm.55211 NM_177681 ENSMUSG00000029587 Zfp12 C530015C18|Krox-7|Zfp-12|Znf12 - 5|5 G2 zinc finger protein 12 protein-coding 70356 Mm.180337 NM_133726 ENSMUSG00000022403 St13 1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48 - 15|15 E1 suppression of tumorigenicity 13 protein-coding 99896 Mm.441412 AW209116 - - - expressed sequence AW209116 unknown 100417191 Gm14726 - - X|X A7.2 melanoma antigen, family A, 4 pseudogene pseudo 26971 Mm.331989 NM_012045 ENSMUSG00000028749 Pla2g2f GIIFsPLA2|sPLA2-IIF - 4|4 D3 phospholipase A2, group IIF protein-coding 108168951 XR_001784307 LOC108168951 - - 4 A5 protein FAM205A-like pseudo 105246675 XR_878429 Gm41926 - - 1 E2.1|1 predicted gene, 41926 ncRNA 627741 Gm6785 EG627741 - 14|14 A2 kinesin family member 2C pseudogene pseudo 230903 Mm.220327 NM_173401 ENSMUSG00000029001 Fbxo44 5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a - 4|4 E2 F-box protein 44 protein-coding 53741 D1Byu26 D0Byu26 - - DNA segment, Chr 1, Brigham Young University 26 unknown 100302476 Lass1-gdf1 - - 8|8 B3.3 LAG1 homolog, ceramide synthase 1, growth differentiation factor 1 transcription unit other 100113460 Secia6 - - - small effect CIA locus 6 unknown 545391 Mm.442974 NM_001034899 ENSMUSG00000091476 Gm16432 EG545391|EG666250 - 1|1 H4 predicted gene 16432 protein-coding 387181 NR_029572 ENSMUSG00000065431 Mir186 Mirn186|mir-186|mmu-mir-186 - 3|3 H4 microRNA 186 ncRNA 112419 Mm.440727 NM_053217 ENSMUSG00000067297 Ifit1bl2 2010002M12Rik|AW412491|Ifit1b - 19|19 C1 interferon induced protein with tetratricopeptide repeats 1B like 2 protein-coding 378425 Mm.277152 NM_001033431 ENSMUSG00000078817 Nlrp12 Nalp12|PYPAF7 - 7|7 A1 NLR family, pyrin domain containing 12 protein-coding 93875 Mm.196711 NM_053129 ENSMUSG00000045689 Pcdhb4 Pcdhb5A|PcdhbD - 18|18 B3 protocadherin beta 4 protein-coding 237934 Mm.484091 NM_213730 ENSMUSG00000064165 Krt39 4732494G06Rik|Ka35 - 11|11 D keratin 39 protein-coding 105244825 XR_872643 Gm40362 - - 12 A2|12 predicted gene, 40362 ncRNA 107757 Pscr2 Pscr-2 - - corneal resistance to P. aeruginosa 2 protein-coding 22134 Mm.246563 NM_009443 ENSMUSG00000056429 Tgoln1 AU015504|D6Ertd384e|TGN38|TGN38A|Ttgn1 - 6 C1|6 32.27 cM trans-golgi network protein protein-coding 107476 Mm.31374 NM_133360 ENSMUSG00000020532 Acaca A530025K05Rik|Acac|Acc1|Gm738 - 11|11 C acetyl-Coenzyme A carboxylase alpha protein-coding 19365 Mm.149 NM_011236 ENSMUSG00000030166 Rad52 Rad52yh - 6 F1|6 56.86 cM RAD52 homolog, DNA repair protein protein-coding 622446 Ptma-ps1 EG622446|Gm6323 - 7|7 A3 prothymosin alpha, pseudogene 1 pseudo 77898 6720482G16Rik - - 3|3 RIKEN cDNA 6720482G16 gene protein-coding 667441 Trav3-1 EG667441|Gm8635 - 14|14 C2 T cell receptor alpha variable 3-1 other 78276 5330433J24Rik - - 15|15 RIKEN cDNA 5330433J24 gene protein-coding 111866 Xltr3 - - - xenotropic long terminal repeat-containing proviral locus 3 other 66448 Mm.23825 NM_025570 ENSMUSG00000029066 Mrpl20 2610008D01Rik|4930425I20Rik - 4 E2|4 87.44 cM mitochondrial ribosomal protein L20 protein-coding 102639577 Gm35857 - - 8 B3.3|8 predicted gene, 35857 pseudo 330662 Mm.436572 NM_001033420 ENSMUSG00000058325 Dock1 9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo - 7|7 F3 dedicator of cytokinesis 1 protein-coding 73790 4930401C12Rik - - 11|11 RIKEN cDNA 4930401C12 gene protein-coding 11871 Mm.439746 NM_007490 ENSMUSG00000092517 Art2a-ps ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1 - 7 E2|7 54.6 cM ADP-ribosyltransferase 2a, pseudogene protein-coding 13193 Mm.12871 NM_010025 ENSMUSG00000031285 Dcx Dbct - X|X F2 doublecortin protein-coding 231871 Mm.469963 NM_144915 ENSMUSG00000039206 Daglb E330036I19Rik - 5|5 G2 diacylglycerol lipase, beta protein-coding 108168378 XR_001782438 Gm46622 - - 18 B3|18 predicted gene, 46622 ncRNA 105242844 Gm38941 - - 7 A1|7 predicted gene, 38941 pseudo 102633540 Mm.477065 NR_146138 Myhas Gm12300|lnc-mg - 11 B3|11 40.59 cM myosin heavy chain gene antisense RNA ncRNA 102637169 XR_391385 Gm34052 - - 7 B3|7 predicted gene, 34052 ncRNA 11773 Mm.18946 NM_009679 ENSMUSG00000022841 Ap2m1 - - 16|16 A3 adaptor-related protein complex 2, mu 1 subunit protein-coding 105246410 XR_001782504 Gm41701 - - 18 B3|18 predicted gene, 41701 ncRNA 102632893 Mm.204718 XR_374988 Gm14285 - - 2 F1|2 63.5 cM predicted gene 14285 ncRNA 74286 Mm.252761 NM_028854 ENSMUSG00000036244 Tbc1d21 1700095K08Rik|MgcRabGAP - 9|9 B TBC1 domain family, member 21 protein-coding 117203 l9Rl2 pl-2 - - lethal, Chr 9, Russell 2 protein-coding 67727 Mm.171334 NM_026343 ENSMUSG00000061455 Stx17 4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351 - 4|4 B1 syntaxin 17 protein-coding 53039 CA7.18 - - - DNA segment, CA7.18 unknown 29823 Del(X)1Brd - - - deletion, Chr X, Bradley 1 other 100038426 Mm.489769 Gm10563 - - - predicted gene 10563 unknown 72454 Mm.46488 NM_133744 ENSMUSG00000049305 Ccdc71 2600016J21Rik - 9|9 F2 coiled-coil domain containing 71 protein-coding 636910 Zfp813-ps EG636910|Zfp813 - 1|1 E2.3 zinc finger protein 813, pseudogene pseudo 70257 Mm.318 NM_027360 ENSMUSG00000021290 2010107E04Rik 9430003J03Rik|AU043134|AV124504|Mp68 - 12|12 F1 RIKEN cDNA 2010107E04 gene protein-coding 100416503 Gm11343 - - 13|13 A3.1 ribosomal protein L17 pseudogene pseudo 257888 Mm.377286 NM_001011741 ENSMUSG00000108167 Olfr1386 MOR256-50 - 11|11 B1.2 olfactory receptor 1386 protein-coding 18795 Mm.330607 NM_019677 ENSMUSG00000051177 Plcb1 3110043I21Rik|AI132408|Plcb|mKIAA0581 - 2 F3|2 65.66 cM phospholipase C, beta 1 protein-coding 105245904 XR_875096 Gm41284 - - 15 B2|15 predicted gene, 41284 ncRNA 329910 Mm.222956 NM_025590 ENSMUSG00000034853 Acot11 1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707 - 4|4 C7 acyl-CoA thioesterase 11 protein-coding 277692 Mm.474523 NR_033639 ENSMUSG00000080059 Rps19-ps3 BE292558|Gm13143|Rps19-ps - 4 E1|4 ribosomal protein S19, pseudogene 3 pseudo 107325940 LOC107325940 - - - origin of replication downstream of immunoglobulin heavy chain (Igh) locus biological-region 109500 Dssc2 - - 2 47.93 cM dextran sodium sulfate induced colitis QTL2 unknown 100041806 XM_017318920 ENSMUSG00000094887 LOC100041806 - - 5|5 PRAME family member 9/15-like protein-coding 241311 Mm.296512 NM_001085507 ENSMUSG00000068966 Zbtb34 Gm349|mKIAA1993 - 2|2 B zinc finger and BTB domain containing 34 protein-coding 102634821 XR_374240 Gm32316 - - 2 B|2 predicted gene, 32316 ncRNA 319323 Mm.439694 B430119L08Rik - - - RIKEN cDNA B430119L08 gene protein-coding 72461 Mm.389969 NM_028243 ENSMUSG00000061119 Prcp 2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP - 7|7 E1 prolylcarboxypeptidase (angiotensinase C) protein-coding 102633014 XR_375760 Gm30944 - - 3 F1|3 predicted gene, 30944 ncRNA 545524 Gm10254 EG545524|Gm1835 - 3 C|3 splicing factor, arginine/serine-rich 10 pseudogene pseudo 102465214 NR_105824 ENSMUSG00000099005 Mir6398 Gm27657|mmu-mir-6398 - 4|4 D2.2 microRNA 6398 ncRNA 110928 Ap3s1-rs3 - - - adaptor-related protein complex 3, sigma 1 subunit, related sequence 3 protein-coding 74931 Mm.388511 NR_015545 ENSMUSG00000086938 4930481A15Rik - - 19|19 A RIKEN cDNA 4930481A15 gene ncRNA 110679 TelXqYq3 TelXqYq-3 - XY 75.0 cM telomeric sequence, Chr X, Chr Y, q arm 3 protein-coding 12924 cri - - - cribriform degeneration unknown 102632951 XR_001785202 Gm30896 - - 6 A3.3|6 predicted gene, 30896 ncRNA 114147 Szs9 - - - seizure susceptibility 9 unknown 109482 Sles2 - - 4 57.76 cM systemic lupus erythmatosus suppressor 2 unknown 547424 Trav15n-2 100101491|EG547424|Gm16366|Gm6037 - 14|14 C2 T cell receptor alpha variable 15N-2 other 109715 Len1 Len-1 - - eye lens protein 1 protein-coding 320295 Mm.131285 NR_040401 ENSMUSG00000097574 C920006O11Rik - - 9|9 E1 RIKEN cDNA C920006O11 gene ncRNA 105243414 XR_870784 Gm39343 - - 9 B|9 predicted gene, 39343 ncRNA 102639852 XR_375425 Gm36066 - - 2 H4|2 predicted gene, 36066 ncRNA 546734 Gm5974 EG546734 - 1|1 C1.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 56361 Mm.23528 NM_019700 ENSMUSG00000029507 Pus1 A730013B20Rik|MPUS1|mPus1p - 5|5 F pseudouridine synthase 1 protein-coding 27575 D5Buc23 449H5.SP6 - 5 38.44 cM DNA segment, Chr 5, Bucan 23 unknown 102639417 XR_383486 Gm26536 - - 14 D1|14 predicted gene, 26536 ncRNA 104156 Mm.155708 NM_023794 ENSMUSG00000013089 Etv5 1110005E01Rik|8430401F14Rik|ERM - 16|16 B1 ets variant 5 protein-coding 667939 Gm8887 EG667939 - 18|18 E1 tubulin, alpha 1B pseudogene pseudo 102635698 Mm.412034 XR_383782 Gm26679 - - 14 E4|14 predicted gene, 26679 ncRNA 116527 Obq14 - - 6 45.74 cM obesity QTL 14 unknown 62774 D16Mit151 - - 16 41.1 cM DNA segment, Chr 16, Massachusetts Institute of Technology 151 unknown 74442 Mm.273360 NM_028943 ENSMUSG00000050931 Sgms2 4933405A16Rik|5133401H06Rik|AI854299 - 3|3 G3 sphingomyelin synthase 2 protein-coding 435781 Gm12422 - - 4|4 B1 40S ribosomal protein S17-like pseudo 14366 Mm.86755 NM_008055 ENSMUSG00000049791 Fzd4 Fz4 - 7 D3|7 49.32 cM frizzled class receptor 4 protein-coding 62547 D11Mit199 - - 11 65.48 cM DNA segment, Chr 11, Massachusetts Institute of Technology 199 unknown 102639508 XR_374166 Gm35807 - - 2 A3|2 predicted gene, 35807 ncRNA 71435 Mm.28507 NM_001081364 ENSMUSG00000036591 Arhgap21 5530401C11Rik|AA416458|ARHGAP10 - 2|2 A3 Rho GTPase activating protein 21 protein-coding 102413 AA517837 - - - expressed sequence AA517837 unknown 16270 In(2)45Rk In45Rk - - inversion, Chr 2, Roderick 45 other 75269 Mm.307994 NM_029228 ENSMUSG00000051788 4930564D02Rik - - 3|3 F2.2 RIKEN cDNA 4930564D02 gene protein-coding 27581 D5Buc12 437P3.SP6 - 5 37.52 cM DNA segment, Chr 5, Bucan 12 unknown 102637654 XR_382300 Gm34409 - - 13 A5|13 predicted gene, 34409 ncRNA 76486 Mm.273319 NM_029627 ENSMUSG00000044678 Ly6k 2410015A16Rik|3110035B01Rik|mLy-6K - 15|15 D3 lymphocyte antigen 6 complex, locus K protein-coding 100041164 Gm13268 - - 2|2 A2 predicted gene 13268 pseudo 245532 Mm.118171 NM_177746 ENSMUSG00000031220 Awat2 9430062J17Rik|ARAT|Dgat2l4|WS - X|X C3 acyl-CoA wax alcohol acyltransferase 2 protein-coding 258473 Olfr897-ps1 MOR170-7 - 9|9 A5.1 olfactory receptor 897, pseudogene 1 pseudo 108167886 XM_017314884 Gm46272 - - 11 A3.1|11 predicted gene, 46272 protein-coding 105244618 Gm40201 - - 11|11 predicted gene, 40201 ncRNA 103995 Hist1-1s - - - H1.S histone protein-coding 100036076 Fmgty2 - - 3 4.85 cM femur geometry 2 unknown 192200 Mm.6433 NM_138684 ENSMUSG00000042845 Wfdc12 Swam2|WAP2 - 2|2 H3 WAP four-disulfide core domain 12 protein-coding 210172 Mm.129371 NM_175436 ENSMUSG00000046541 Zfp526 D030024H03Rik|Znf526 - 7|7 A3 zinc finger protein 526 protein-coding 75216 Mm.312204 NM_181815 ENSMUSG00000061533 Cep128 4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20 - 12|12 D3 centrosomal protein 128 protein-coding 105244982 Gm26584 - - 8|8 predicted gene, 26584 pseudo 102632515 Mm.416995 NR_152620 ENSMUSG00000111266 Gm30570 - - 10 A1|10 predicted gene, 30570 ncRNA 85079 D9Mit14 - - 9 55.65 cM DNA segment, Chr 9, Massachusetts Institute of Technology 14 unknown 330385 Mm.483472 NR_015530 ENSMUSG00000097462 9530026P05Rik B430306B02 - 6|6 D1 RIKEN cDNA 9530026P05 gene ncRNA 319554 Mm.29847 NM_145360 ENSMUSG00000058258 Idi1 4832416K17Rik|IPPI1 - 13|13 A1 isopentenyl-diphosphate delta isomerase protein-coding 102639188 Mm.382111 XR_867550 Gm27008 - - 3 F2.3|3 predicted gene, 27008 ncRNA 98047 R75537 - - - expressed sequence R75537 unknown 103926449 Fkbp1a-ps4 - - 4 C3|4 FK506 binding protein 1a, pseudogene 4 pseudo 102636242 Gm28245 - - Y|Y predicted gene 28245 ncRNA 21216 T(5;15)8Gso T8Gso - - reciprocal translocation, Chr 5 and 15, Generoso 8 other 102640914 XR_391607 Gm36865 - - 7 D1|7 predicted gene, 36865 ncRNA 665518 Gm12723 - - 4|4 C7 predicted gene 12723 pseudo 100534357 LOC100534357 - - 5|5 A1 anaphase-promoting complex subunit 5 pseudogene pseudo 75796 Mm.159575 NM_029441 ENSMUSG00000031758 Cdyl2 1700029M19Rik|4930453I21Rik|Gm20194 - 8|8 E1 chromodomain protein, Y chromosome-like 2 protein-coding 100334 Mm.440966 AU044157 - - - expressed sequence AU044157 unknown 67941 Mm.30120 NM_026467 ENSMUSG00000036781 Rps27l 1810034D23Rik - 9|9 C ribosomal protein S27-like protein-coding 404386 Olfr428-ps1 GA_x5J8B7W3B3M-69696-70097|GA_x6K02T2P20D-21084020-21083619 - 1|1 H3 olfactory receptor 428, pseudogene 1 pseudo 102636504 XR_387548 Gm33551 - - 3 A1|3 predicted gene, 33551 ncRNA 320859 A230077L10Rik - - 7|7 RIKEN cDNA A230077L10 gene protein-coding 100034901 Lp1 - - 16 29.93 cM lymphocyte proliferation 1 unknown 67693 Mm.330525 NM_026318 ENSMUSG00000027245 Hypk 2310003F16Rik|HSPC136 - 2|2 E5 huntingtin interacting protein K protein-coding 225362 Mm.293588 NM_144865 ENSMUSG00000038555 Reep2 - - 18|18 B1 receptor accessory protein 2 protein-coding 53604 Mm.9500 NM_015785 ENSMUSG00000020193 Zpbp 4930486K01Rik|Iam38|Sp38 - 11|11 A1 zona pellucida binding protein protein-coding 105247130 Gm42285 - - 4|4 predicted gene, 42285 ncRNA 53010 K4SP6 - - - DNA segment, K4SP6 unknown 68969 Mm.28753 NM_026892 ENSMUSG00000006941 Eif1b 1500010M16Rik|3110001N14Rik|Gc20 - 9|9 F4 eukaryotic translation initiation factor 1B protein-coding 110069 Pad3 - - - MMTV LTR integration site 3 protein-coding 102631667 Gm29950 - - 3 F2.1|3 predicted gene, 29950 pseudo 100316684 NR_035443 ENSMUSG00000084592 Mir1898 Mirn1898|mmu-mir-1898 - 15 A1|15 5.9 cM microRNA 1898 ncRNA 100036328 Mfi5q1 - - - M16 feed intake at 5 weeks QTL 1 unknown 12985 Mm.1238 NM_009971 ENSMUSG00000038067 Csf3 Csfg|G-CSF|MGI-IG - 11 D|11 62.45 cM colony stimulating factor 3 (granulocyte) protein-coding 105245182 XR_871742 Gm40670 - - 10 B4|10 predicted gene, 40670 ncRNA 71445 Mm.242968 NR_015467 ENSMUSG00000087174 5530601H04Rik AI835882 - X|X D RIKEN cDNA 5530601H04 gene ncRNA 104132 Ads4 Ads-4 - - anti dsDNA antibody 4 unknown 61807 D2Mit382 - - 2 49.33 cM DNA segment, Chr 2, Massachusetts Institute of Technology 382 unknown 100861962 Gm21358 - - 13 D2.3|13 predicted gene, 21358 pseudo 102639683 Mm.440960 XR_379082 LOC102639683 - - 8 B3.3 uncharacterized LOC102639683 ncRNA 100417960 Gm18921 - - 12|12 F2 acyl-Coenzyme A binding domain containing 5 pseudogene pseudo 27379 Mm.241933 NM_013773 ENSMUSG00000066359 Tcl1b1 C88214 - 12|12 E T cell leukemia/lymphoma 1B, 1 protein-coding 102632898 XR_380934 ENSMUSG00000087163 Gm16230 - - 10 D3|10 74.6 cM predicted gene 16230 ncRNA 100034858 Fob3b1 Fob3b - - F-line obesity QTL 3b1 unknown 100043128 Gm4247 - - 7 A1|7 predicted gene 4247 pseudo 109280133 LOC109280133 Mm1304 - - VISTA enhancer mm1304 biological-region 52492 D18Ertd232e - - 18 11.69 cM DNA segment, Chr 18, ERATO Doi 232, expressed unknown 100628598 NR_039591 ENSMUSG00000092679 Mir5129 mir-5129|mmu-mir-5129|mu-mir-5129 - 2 B|2 27.31 cM microRNA 5129 ncRNA 105246444 XR_877439 Gm41733 - - 18 D3|18 predicted gene, 41733 ncRNA 100036049 Pbw2 - - - pentobarbital withdrawal QTL 2 unknown 624652 Gm13474 - - 2|2 B golgi autoantigen, golgin subfamily a,2 pseudogene pseudo 107832853 LOC107832853 - - - Sirt1 promoter region biological-region 100126546 Gm10708 - - 9|9 A1 predicted gene 10708 protein-coding 105244246 Gm39889 - - 2|2 predicted gene, 39889 ncRNA 668994 Gm9436 EG668994 - X A1.2|X heat shock protein 8 pseudogene pseudo 18390 Mm.438000 NM_011013 ENSMUSG00000000766 Oprm1 M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR - 10 A1|10 1.85 cM opioid receptor, mu 1 protein-coding 666753 Gm8274 EG666753 - 10|10 C1 predicted gene 8274 pseudo 100502953 Mm.486157 NM_001205033 ENSMUSG00000096421 Gm10100 - - 10 C1|10 39.72 cM predicted gene 10100 protein-coding 110120425 LOC110120425 - - - VISTA enhancer mm1445 biological-region 666987 Gm8407 EG666987 - 1|1 H6 ribosomal protein S15 pseudogene pseudo 105243071 XR_870004 Gm39101 - - 7 F3|7 predicted gene, 39101 ncRNA 100093699 Gm10210 - - - predicted gene 10210 unknown 62738 D18Mit174 - - 18 15.5 cM DNA segment, Chr 18, Massachusetts Institute of Technology 174 unknown 52944 C.seq - - - DNA segment, C unknown 68328 Mm.29355 NM_026677 ENSMUSG00000027935 Rab13 0610007N03Rik|B230212B15Rik - 3 F1|3 39.21 cM RAB13, member RAS oncogene family protein-coding 620340 Rpl9-ps5 EG620340|Gm6144 - 17|17 B1 ribosomal protein L9, pseudogene 5 pseudo 78092 Mm.46855 NM_030036 ENSMUSG00000094802 Samt1 Gm15144 - X|X F3 spermatogenesis associated multipass transmembrane protein 1 protein-coding 108167688 XR_001779319 Gm46134 - - 9 F3|9 predicted gene, 46134 ncRNA 72609 Mm.387101 NR_046019 2700070H01Rik - - 14|14 D1 RIKEN cDNA 2700070H01 gene ncRNA 414068 Mm.389550 NR_026843 ENSMUSG00000086150 Bach2os - - 4|4 A5 BTB and CNC homology 2, opposite strand ncRNA 319981 Mm.131454 NR_045984 ENSMUSG00000107667 C530044C16Rik - - 6|6 B2.3 RIKEN cDNA C530044C16 gene ncRNA 106839 AA407331 - - - expressed sequence AA407331 unknown 64295 Mm.150098 NM_022418 ENSMUSG00000028958 Tmub1 2010004O20Rik|AB030183|Hops - 5|5 A3 transmembrane and ubiquitin-like domain containing 1 protein-coding 442817 Mm.126856 NM_001002781 C130046B21Rik - - 2|2 A3 RIKEN cDNA C130046B21 gene unknown 108591 Iap5rc7 - - - intracisternal A-type particle, U5 region, SINE repeat c-7 other 100503337 Mm.103412 NR_045687 Gm9895 - - 19|19 C1 predicted gene 9895 ncRNA 100416738 Gm18219 - - 4|4 C6 zinc finger protein 352 pseudogene pseudo 382364 Gm1153 Gm395|Tmf1 - 8|8 B2 predicted gene 1153 unknown 109460 Pas1c - - 6 39.71 cM pulmonary adenoma susceptibility 1c unknown 71732 Mm.295013 NM_027889 ENSMUSG00000032127 Vps11 1200011A11Rik - 9|9 A5.2 VPS11, CORVET/HOPS core subunit protein-coding 97640 Mm.125346 C78653 - - 10 D2|10 expressed sequence C78653 ncRNA 110120461 LOC110120461 - - - VISTA enhancer mm1532 biological-region 102634767 Gm32271 - - 15|15 predicted gene, 32271 ncRNA 60770 D2Mit84 - - 2 22.09 cM DNA segment, Chr 2, Massachusetts Institute of Technology 84 unknown 791287 Gm9951 - - - predicted gene 9951 ncRNA 14871 Mm.2746 NM_008185 ENSMUSG00000001663 Gstt1 AI255817|Gstt1-1 - 10 C1|10 38.58 cM glutathione S-transferase, theta 1 protein-coding 109280155 LOC109280155 Mm1403 - - VISTA enhancer mm1403 biological-region 493150 Pbwg8 - - 6 37.75 cM postnatal body weight growth 8 unknown 106828 AW743368 - - - expressed sequence AW743368 unknown 109280044 LOC109280044 Mm324 - - VISTA enhancer mm324 biological-region 108033 Usf1-rs1 - - - upstream transcription factor 1, related sequence 1 protein-coding 78268 5330423I11Rik - - 9|9 RIKEN cDNA 5330423I11 gene protein-coding 100861656 Gm21110 - - 12|12 predicted gene, 21110 protein-coding 68498 Mm.174368 NM_026743 ENSMUSG00000030351 Tspan11 1110014F12Rik|AU067806 - 6|6 F3 tetraspanin 11 protein-coding 102633700 Gm31461 - - 1|1 predicted gene, 31461 ncRNA 76355 Mm.251537 NM_029578 ENSMUSG00000022130 Tgds 2610017J16Rik|2610025M23Rik|AI648925 - 14|14 E4 TDP-glucose 4,6-dehydratase protein-coding 100035166 Pbmd1 - - 1 88.97 cM peak bone mineral density 1 unknown 100042801 Gm15264 - - 3|3 F2.1 tuftelin 1 pseudogene pseudo 102639812 XR_374852 Gm36036 - - 2 E3|2 predicted gene, 36036 ncRNA 620078 Mm.386456 NM_175219 ENSMUSG00000052477 C130026I21Rik 4930565N07Rik - 1|1 C5 RIKEN cDNA C130026I21 gene protein-coding 66662 Mm.477847 NM_175110 ENSMUSG00000062470 Fbxl12os 5730577I03Rik - 9|9 A3 F-box and leucine-rich repeat protein 12, opposite strand pseudo 102638851 XR_865735 Gm17224 - - 1 H3|1 79.54 cM predicted gene 17224 ncRNA 404324 Mm.377277 NM_207562 ENSMUSG00000075193 Olfr1051 GA_x5J8B7W3KVV-25848-25992|MOR187-5 - 2|2 D olfactory receptor 1051 protein-coding 108167730 XR_001779459 Gm46160 - - 1 E4|1 predicted gene, 46160 ncRNA 16197 Mm.389 NM_008372 ENSMUSG00000003882 Il7r CD127|IL-7Ralpha - 15 A1|15 4.16 cM interleukin 7 receptor protein-coding 75586 Mm.75707 NM_029351 ENSMUSG00000049809 Krtap9-3 2310040M23Rik - 11|11 D keratin associated protein 9-3 protein-coding 21809 Mm.3992 NM_009368 ENSMUSG00000021253 Tgfb3 TGF-beta-3|Tgfb-3 - 12 D2|12 40.09 cM transforming growth factor, beta 3 protein-coding 12808 Mm.22847 NM_172496 ENSMUSG00000020173 Cobl - - 11 A1|11 7.3 cM cordon-bleu WH2 repeat protein-coding 320621 Mm.301176 NM_177210 D830044D21Rik - - 14|14 B RIKEN cDNA D830044D21 gene unknown 100418365 Gm19164 - - 8|8 A2 TPX2, microtubule-associated protein homolog pseudogene pseudo 110658 Idd9 Idd-9 - 4 57.9 cM insulin dependent diabetes susceptibility 9 protein-coding 74867 4930445B03Rik - - - RIKEN cDNA 4930445B03 gene protein-coding 100306959 Mm.418631 B230322F03Rik - - - RIKEN cDNA B230322F03 gene protein-coding 78802 Mm.282339 NM_030188 ENSMUSG00000075271 Ttc30a1 4930506L13Rik - 2|2 C3 tetratricopeptide repeat domain 30A1 protein-coding 100416179 Gm14083 - - 2|2 G1 predicted gene 14083 pseudo 105242879 XR_881898 Gm38967 - - 7 A3|7 predicted gene, 38967 ncRNA 14172 Mm.339812 NM_008005 ENSMUSG00000057967 Fgf18 D130055P09Rik|FGF-18 - 11|11 A4 fibroblast growth factor 18 protein-coding 105247178 XR_881474 1700091J24Rik - - 4|4 D2.3 RIKEN cDNA 1700091J24 gene ncRNA 100039167 Gm2077 - - 3|3 A1 predicted gene 2077 pseudo 62171 D14Mit74 - - 14 42.79 cM DNA segment, Chr 14, Massachusetts Institute of Technology 74 unknown 102640419 XR_001779126 Gm16322 - - 9 A5.1|9 23.76 cM predicted gene 16322 ncRNA 100043337 Gm4373 - - 7 B1|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 109279889 LOC109279889 Mm51 - - VISTA enhancer mm51 biological-region 102466820 NR_106085 ENSMUSG00000098596 Mir7226 Gm27630|mmu-mir-7226 - 4|4 D2.1 microRNA 7226 ncRNA 552881 LOC552881 - - - uncharacterized LOC552881 unknown 102637916 XR_380568 Gm34609 - - 10 B5.3|10 predicted gene, 34609 ncRNA 100043391 Rpl10-ps1 Gm13891 - 2|2 E3 ribosomal protein L10, pseudogene 1 pseudo 110031 Msmr1 - - - MSM lymphoma resistance 1 protein-coding 100043070 Mm.247420 XR_373448 Gm4208 - - 1 C2|1 predicted gene 4208 unknown 100036174 Bczr1 - - - brain copper/zinc regulation 1 unknown 102466824 NR_106100 ENSMUSG00000098937 Mir7241 Gm27918|mmu-mir-7241 - 9|9 C microRNA 7241 ncRNA 666015 Gm13042 - - 4|4 E1 KH-type splicing regulatory protein pseudogene pseudo 102639167 XR_387891 Gm35542 - - 8 C3|8 predicted gene, 35542 ncRNA 111563 Xmv16 Xmv-16 - - xenotropic murine leukemia virus 16 other 52785 D10Bwg2001e - - - DNA segment, Chr 10, Brigham & Women's Genetics 2001 expressed unknown 62968 D14Mit239a D14Mit1008|D14Mit239 - 14 39.44 cM DNA Segment, Chr 14, Massachusetts Institute of Technology 239a unknown 13364 di - - - duplicate incisors unknown 102636769 XM_006498514 Gm33749 - - 2 A3|2 predicted gene, 33749 protein-coding 100169889 Mm.491213 NR_023846 Peg3os Apeg3|Peg3as - 7|7 A1 Peg3 opposite strand ncRNA 97295 Mm.33401 C79476 - - - expressed sequence C79476 unknown 62155 D14Mit37 - - 14 33.21 cM DNA segment, Chr 14, Massachusetts Institute of Technology 37 unknown 108167764 XR_001779674 Gm46186 - - 10 D3|10 predicted gene, 46186 ncRNA 100041472 Gm3360 - - 5 A1|5 anaphase-promoting complex subunit 5 pseudogene pseudo 70544 Mm.46654 NM_027457 ENSMUSG00000004945 Tmem242 1110008A10Rik|2310046K16Rik|5730437N04Rik - 17|17 A1 transmembrane protein 242 protein-coding 67319 Mm.234187 NR_033784 ENSMUSG00000100282 1700041C23Rik - - 9|9 B RIKEN cDNA 1700041C23 gene ncRNA 60861 D6Mit38 - - 6 46.52 cM DNA segment, Chr 6, Massachusetts Institute of Technology 38 unknown 69453 Mm.84618 NM_027084 ENSMUSG00000036480 Prss56 1700027L20Rik - 1|1 C5 protease, serine 56 protein-coding 320116 Mm.39600 NM_177075 ENSMUSG00000048721 Fndc9 C030019I05Rik - 11|11 B1.1 fibronectin type III domain containing 9 protein-coding 102639522 XR_375732 Gm35817 - - 3 E2|3 predicted gene, 35817 ncRNA 102810 AW742856 - - - expressed sequence AW742856 unknown 102636274 XR_382127 Gm33387 - - 13 A3.1|13 predicted gene, 33387 ncRNA 666334 Gm13234 - - 4|4 E1 predicted gene 13234 pseudo 75905 Mm.159617 NM_175228 ENSMUSG00000037358 4930578C19Rik - - X|X A1.3 RIKEN cDNA 4930578C19 gene protein-coding 100041645 Vmn2r-ps114 - - 17|17 A3.2 vomeronasal 2, receptor, pseudogene 114 pseudo 100504078 Gm20049 - - 12 C1|12 26.43 cM phosphatidylinositol-glycan biosynthesis class X protein-like pseudo 626950 Gm6722 EG626950|EyeLinc13 - 12|12 D1 H2A histone family, member Z pseudogene pseudo 100862179 XM_006536340 LOC100862179 - - X A3.1 spindlin-2A-like protein-coding 497252 Mm.417612 LOC497252 - - - uncharacterized LOC497252 unknown 73599 Mm.489048 1700120G11Rik - - 4|4 RIKEN cDNA 1700120G11 gene protein-coding 18582 Mm.12925 NM_008801 ENSMUSG00000026239 Pde6d AI841218|PrBP/delta - 1|1 C5 phosphodiesterase 6D, cGMP-specific, rod, delta protein-coding 62678 D16Mit101 - - 16 14.69 cM DNA segment, Chr 16, Massachusetts Institute of Technology 101 unknown 105246623 Gm41888 - - X|X predicted gene, 41888 ncRNA 19347 Mm.21904 NM_021494 ENSMUSG00000035901 Dennd5a 1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091 - 7|7 E3 DENN/MADD domain containing 5A protein-coding 56591 116m19Sp6 - - - DNA segment, 116m19Sp6 unknown 72962 Mm.287977 NM_138302 ENSMUSG00000022615 Tymp 2900072D10Rik|Ecgf1|PD-ECGF|PDECGF|Pdgfec|TP - 15 E3|15 44.86 cM thymidine phosphorylase protein-coding 100124464 NR_030563 ENSMUSG00000095006 Mir465c-2 Mirn465c-2 - X A7.1|X microRNA 465c-2 ncRNA 102639237 XR_387892 Gm35593 - - 8 C3|8 predicted gene, 35593 ncRNA 100312534 Vmn1r-ps102 Gm11297 - 13|13 A3.1 vomeronasal 1 receptor, pseudogene 102 pseudo 100416534 Gm18153 - - 15|15 B3.3 H3 histone, family 3B pseudogene pseudo 620542 Gm6161 EG620542 - 1|1 A2 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 100861597 Gm21063 - - 14 A1|14 ubiquitin specific peptidase 15 pseudogene pseudo 620615 Gm6167 EG620615 - 9|9 F3 ribosomal protein L7A pseudogene pseudo 667541 LOC667541 EG667541 - 13|13 A5 hypothetical LOC667541 pseudo 319588 9630002A11Rik - - 11|11 RIKEN cDNA 9630002A11 gene protein-coding 27481 78A11R - - - DNA segment, 78A11R unknown 11799 Mm.8552 NM_009689 ENSMUSG00000017716 Birc5 AAC-11|Api4|TIAP|survivin40 - 11|11 E2 baculoviral IAP repeat-containing 5 protein-coding 110878 Nova2-rs1 - - - neuro-oncological ventral antigen 2, related sequence 1 protein-coding 217578 Mm.479583 NM_013815 ENSMUSG00000035021 Baz1a Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146 - 12|12 C1 bromodomain adjacent to zinc finger domain 1A protein-coding 77680 9230109C02Rik - - 12|12 RIKEN cDNA 9230109C02 gene protein-coding 108167692 XR_001779328 Gm46136 - - 9 F4|9 predicted gene, 46136 ncRNA 102637133 XR_382292 Gm34020 - - 13 A5|13 predicted gene, 34020 ncRNA 12070 Mm.90787 NM_009750 ENSMUSG00000046432 Bex3 AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1 - X F1|X 57.64 cM brain expressed X-linked 3 protein-coding 102634134 XR_375130 Gm31791 - - 2 H1|2 predicted gene, 31791 ncRNA 100035988 Blct2 - - - blood cell traits 2 unknown 320271 Mm.204836 NM_178778 ENSMUSG00000035236 Scai 9330112M16|A930041I02Rik|AI662729 - 2|2 B suppressor of cancer cell invasion protein-coding 93732 Mm.28700 NM_053115 ENSMUSG00000021751 Acox2 THCCox - 14|14 A1 acyl-Coenzyme A oxidase 2, branched chain protein-coding 102638172 XR_876396 Gm34799 - - 17 A1|17 predicted gene, 34799 ncRNA 64008 Mm.449427 NM_022026 ENSMUSG00000032204 Aqp9 1700020I22Rik|AI266899|AQP-9 - 9|9 D aquaporin 9 protein-coding 102635440 Gm21922 - - Y|Y predicted gene, 21922 protein-coding 258370 Mm.480193 NM_146373 ENSMUSG00000075075 Olfr1253 MOR231-18|MOR231-19P|Olfr1253-ps1|Olfr1559-ps1 - 2|2 E1 olfactory receptor 1253 protein-coding 52763 D2Bwg0377e - - - DNA segment, Chr 2, Brigham & Women's Genetics 0377 expressed unknown 28211 D6Wum18 330B9L2 - - DNA segment, Chr 6, Washington University School of Medicine 18 unknown 100042754 Gm4011 - - 7 A1|7 vomeronasal 2, receptor 28 pseudogene pseudo 54725 Mm.234832 NM_018770 ENSMUSG00000032076 Cadm1 2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1 - 9|9 A5.3 cell adhesion molecule 1 protein-coding 100416168 Gm17954 - - 3|3 F3 ribosomal protein L5 pseudogene pseudo 100503427 Mm.446834 NR_045793 ENSMUSG00000097368 Gm10390 - - 5 F|5 60.58 cM predicted gene 10390 ncRNA 100503231 Gm19601 - - 5|5 63.15 cM predicted gene, 19601 protein-coding 667499 Gm11220 - - 4|4 C1 predicted gene 11220 pseudo 237754 Mm.130787 NM_172793 ENSMUSG00000040283 Btnl9 B430208I01|Btn3|D330012D11Rik - 11|11 B1.2 butyrophilin-like 9 protein-coding 16886 Mm.124176 NM_010718 ENSMUSG00000020451 Limk2 Limk-2|whe - 11|11 A1 LIM motif-containing protein kinase 2 protein-coding 61559 D9Mit181 - - 9 46.58 cM DNA segment, Chr 9, Massachusetts Institute of Technology 181 unknown 75819 Mm.399244 NR_040663 ENSMUSG00000087137 4930509K18Rik - - 4|4 A5 RIKEN cDNA 4930509K18 gene ncRNA 100579155 Mm.412354 Gm17590 - - 5 2.15 cM predicted gene, 17590 protein-coding 14611 Mm.57207 NM_016975 ENSMUSG00000048582 Gja3 Cnx46|Cx43|Cx46|Gja-3 - 14 C3|14 29.82 cM gap junction protein, alpha 3 protein-coding 112149 Afw6 - - - abdominal fat weight QTL 6 unknown 102636226 Mm.412602 NR_151518 Gm33354 - - 1 H2.3|1 predicted gene, 33354 ncRNA 75831 Mm.159595 NR_131024 ENSMUSG00000084909 4930528G23Rik - - 6|6 G3 RIKEN cDNA 4930528G23 gene ncRNA 13087 Mm.389848 NM_007812 ENSMUSG00000005547 Cyp2a5 CYPIIA5|Coh|Cyp15a2 - 7 A3|7 15.54 cM cytochrome P450, family 2, subfamily a, polypeptide 5 protein-coding 73418 1700047O18Rik - - 7|7 RIKEN cDNA 1700047O18 gene protein-coding 110120492 LOC110120492 - - - VISTA enhancer mm1385 biological-region 692139 Igkv13-73-1 - - 6|6 C1 immunoglobulin kappa chain variable 13-73-1 pseudo 105243731 Gm39542 - - X|X predicted gene, 39542 ncRNA 100041296 Mm.389635 NM_001270456 ENSMUSG00000079424 Gm3259 - - 5 E3|5 predicted gene 3259 protein-coding 102631758 Gm11870 - - 4|4 6.66 cM predicted gene 11870 pseudo 193280 Mm.396842 NR_038058 C030037D09Rik 9330160M04 - 11|11 C RIKEN cDNA C030037D09 gene ncRNA 107804 Pick4 - - - protein that interacts with C kinase 4 protein-coding 67096 Mm.252785 NM_025962 ENSMUSG00000028690 Mmachc 1810037K07Rik|CblC - 4|4 D1 methylmalonic aciduria cblC type, with homocystinuria protein-coding 102632389 XR_379689 Gm24463 - - 9 E3.1|9 predicted gene, 24463 ncRNA 668775 Gm9351 EG668775 - 17|17 E2 ribosomal protein L32 pseudogene pseudo 102636598 XR_385475 Gm33617 - - 17 A3.3|17 predicted gene, 33617 ncRNA 27814 256O10F - - - DNA segment, 256O10F (Research Genetics) unknown 102633663 XR_379783 Gm31434 - - 9 F1|9 predicted gene, 31434 ncRNA 105243938 XR_865461 Gm38137 - - 1 C2|1 predicted gene, 38137 ncRNA 102637149 XR_384923 Gm34033 - - 16 C1.3|16 predicted gene, 34033 ncRNA 68520 Mm.390497 NM_026752 ENSMUSG00000021286 Zfyve21 1110013H04Rik|AW558780|C85416 - 12|12 F1 zinc finger, FYVE domain containing 21 protein-coding 114162 Cons2 - - 7 48.43 cM consumption-saccharin intake 2 unknown 111669 Mintc - - - Moloney MuLV integration site, EC cells, c other 106877 Mm.26632 NM_178928 ENSMUSG00000033032 Afap1l1 AI173486 - 18|18 E1 actin filament associated protein 1-like 1 protein-coding 12661 Mm.251288 NM_007697 ENSMUSG00000030077 Chl1 A530023M13Rik|AI465420|CALL|LICAM2 - 6|6 E1 cell adhesion molecule L1-like protein-coding 667742 Mm.158720 NM_172629 ENSMUSG00000041482 Piezo2 5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2 - 18|18 E1 piezo-type mechanosensitive ion channel component 2 protein-coding 227885 Mm.301654 NR_033595 ENSMUSG00000083270 Gm13498 - - 2|2 C1.1 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 109280110 LOC109280110 Mm1333 - - VISTA enhancer mm1333 biological-region 73161 Mm.158958 3110035C09Rik - - 10|10 RIKEN cDNA 3110035C09 gene protein-coding 667153 Gm8484 EG667153 - 15|15 B1 deleted in bladder cancer 1 pseudogene pseudo 234788 Mm.302096 NM_001009950 ENSMUSG00000034224 Slc38a8 Gm587 - 8|8 E1 solute carrier family 38, member 8 protein-coding 545852 Amd-ps2 EG545852 - 6|6 C1 S-adenosylmethionine decarboxylase, pseudogene 2 pseudo 192195 Mm.130752 NM_138679 ENSMUSG00000028053 Ash1l 8030453L17Rik|Ash1|E430018P19Rik|Kmt2h - 3|3 F1 ASH1 like histone lysine methyltransferase protein-coding 70769 Mm.402190 NM_053086 ENSMUSG00000015176 Nolc1 NOPP130|NOPP140|P130 - 19|19 C3 nucleolar and coiled-body phosphoprotein 1 protein-coding 76032 5830438M01Rik - - 16|16 RIKEN cDNA 5830438M01 gene protein-coding 21047 T(10;16)59H T59H - - reciprocal translocation, Chr 10 and 16, Harwell 59 other 18025 Mm.42138 NM_010903 ENSMUSG00000029832 Nfe2l3 Nrf3 - 6 B3|6 24.84 cM nuclear factor, erythroid derived 2, like 3 protein-coding 102638332 XR_386729 Gm34922 - - 19 C3|19 predicted gene, 34922 ncRNA 228942 Mm.40555 NM_175631 ENSMUSG00000067578 Cbln4 AI848962 - 2|2 H3 cerebellin 4 precursor protein protein-coding 97131 C77096 - - - expressed sequence C77096 unknown 13137 Mm.436759 NM_007827 ENSMUSG00000026401 Cd55b AI323748|Daf|Daf-TM|Daf2|TM-DAF - 1 E4|1 56.89 cM CD55 molecule, decay accelerating factor for complement B protein-coding 14784 Mm.439649 NM_008163 ENSMUSG00000059923 Grb2 AA408164|Ash - 11 E2|11 80.91 cM growth factor receptor bound protein 2 protein-coding 100035782 Cia32 - - - collagen induced arthritis QTL 32 unknown 667359 Gpr31c EG667359|Gm8593 - 17|17 A1 G protein-coupled receptor 31, D17Leh66c region pseudo 102633164 Gm31061 - - X|X predicted gene, 31061 ncRNA 228859 Mm.242917 NM_173397 ENSMUSG00000048486 Fitm2 AI414861|D930001I22Rik|Fit2 - 2|2 H3 fat storage-inducing transmembrane protein 2 protein-coding 61075 D2Mit313 - - 2 3.85 cM DNA segment, Chr 2, Massachusetts Institute of Technology 313 unknown 545750 Gm5866 EG545750 - 5|5 C1 predicted gene 5866 pseudo 100416262 Gm13854 - - 6|6 A3.3 heat shock protein 8 pseudogene pseudo 404363 Olfr254-ps1 GA_x6K02T2N0WB-12427-12634 - - olfactory receptor 254, pseudogene 1 pseudo 242521 Mm.260601 NM_172871 ENSMUSG00000070923 Klhl9 8030469P05|C530050O22Rik|mKIAA1354 - 4|4 C4 kelch-like 9 protein-coding 320808 Mm.220310 NM_177267 ENSMUSG00000049106 Dcaf5 9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22 - 12|12 C3 DDB1 and CUL4 associated factor 5 protein-coding 23880 Mm.170905 NM_011815 ENSMUSG00000022148 Fyb ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130 - 15|15 A1 FYN binding protein protein-coding 76785 Mm.444318 NM_029740 2410124H12Rik - - 16|16 C4 RIKEN cDNA 2410124H12 gene protein-coding 78640 Mm.234265 NR_131008 1700122C19Rik - - 19|19 C2 RIKEN cDNA 1700122C19 gene ncRNA 110494 Tcra-V3.3 - - - T cell receptor alpha, variable 3.3 other 77509 9330153N18Rik - - 6|6 RIKEN cDNA 9330153N18 gene protein-coding 384658 Gm5338 EG384658 - 7|7 E3 high mobility group box 2 pseudogene pseudo 100416813 Gm18272 - - 17|17 B1 zinc finger protein 458 pseudogene pseudo 105244111 XR_866114 Gm39784 - - 2 B|2 predicted gene, 39784 ncRNA 101631 Mm.334300 NM_001033206 ENSMUSG00000060260 Pwwp2b AI594893|D7Ertd517e|D930023J19Rik|Pwwp2 - 7 F4|7 84.39 cM PWWP domain containing 2B protein-coding 100042394 Mm.301853 Gm3822 Gm575 - 5 C3.1|5 predicted gene 3822 protein-coding 105245890 XR_875039 ENSMUSG00000115585 Gm41271 - - 15 A1|15 predicted gene, 41271 ncRNA 100043796 Gm10169 Mif-ps4 - 7|7 B1 macrophage migration inhibitory factor, pseudogene 4 pseudo 11609 Mm.2679 NM_007429 ENSMUSG00000068122 Agtr2 AI316812|AW107640 - X A2|X 16.71 cM angiotensin II receptor, type 2 protein-coding 382000 Mm.14269 NM_001007582 ENSMUSG00000058618 AY761184 CRS1C-3|CRS1C-6 - 8|8 A2 cDNA sequence AY761184 protein-coding 78436 Mm.211401 A930018C05Rik - - 8|8 RIKEN cDNA A930018C05 gene protein-coding 19819 Mm.10152 NM_011275 ENSMUSG00000020630 Rnaseh1 - - 12|12 A2 ribonuclease H1 protein-coding 108168110 XR_001781028 Gm46437 - - 13 D1|13 predicted gene, 46437 ncRNA 319424 Mm.417617 E030004H24Rik - - 2|2 RIKEN cDNA E030004H24 gene protein-coding 105244853 XR_869270 Gm40387 - - 6 D1|6 predicted gene, 40387 ncRNA 102467305 n-TEttc8 n-Te18 - 9 F1|9 nuclear encoded tRNA glutamic acid 8 (anticodon TTC) tRNA 108169103 Gm43649 - - 5 G2|5 40S ribosomal protein S15a pseudogene pseudo 102637239 XR_379826 Gm34106 - - 9 F1|9 predicted gene, 34106 ncRNA 105243986 Gm37943 - - 1|1 predicted gene, 37943 ncRNA 100038850 Mm.213262 Trav9d-3 A130082M07Rik|Gm10889 - 14|14 C2 T cell receptor alpha variable 9D-3 other 101055808 Gm29725 - - 7|7 predicted gene, 29725 pseudo 100526543 NR_037209 ENSMUSG00000095292 Mir344d-3 mir-344d-3|mmu-mir-344d-3 - 7 C|7 34.28 cM microRNA 344d-3 ncRNA 666489 Gm8130 EG666489 - 16|16 B1 ribosomal protein S3 pseudogene pseudo 665047 Gm7464 EG665047 - 18|18 A1 charged multivesicular body protein 3 pseudogene pseudo 102633458 Mm.295875 XM_006518281 Gm11100 - - 14 A1|14 7.08 cM predicted gene 11100 protein-coding 244813 Mm.261652 NM_178245 ENSMUSG00000054360 Bsx Bsx1a|Bsx1b - 9|9 A5.1 brain specific homeobox protein-coding 73585 Mm.159031 1700111E14Rik - - 6|6 RIKEN cDNA 1700111E14 gene unknown 105244999 XM_017313711 Gm40514 - - 9 A5.1|9 predicted gene, 40514 protein-coding 78885 Mm.325512 NM_030205 ENSMUSG00000039637 Coro7 0610011B16Rik|AW048373|AW556392 - 16 A1|16 2.45 cM coronin 7 protein-coding 270151 Mm.3957 NM_178420 ENSMUSG00000032109 Nlrx1 BC034204|NOD9 - 9|9 A5.2 NLR family member X1 protein-coding 102635176 XR_391652 Gm32579 - - 7 D3|7 predicted gene, 32579 ncRNA 666782 Rps18-ps2 Gm11811 - 4|4 A1 ribosomal protein S18, pseudogene 2 pseudo 233895 Mm.44183 NM_145589 ENSMUSG00000030822 Prr14 BC006909 - 7|7 F3 proline rich 14 protein-coding 71135 Mm.444677 4933411O13Rik - - 16|16 RIKEN cDNA 4933411O13 gene protein-coding 105246844 Gm42065 - - 19|19 predicted gene, 42065 ncRNA 105246681 XR_878436 Gm28282 - - 1 E2.1|1 predicted gene 28282 ncRNA 77958 Mm.449975 A930023M06Rik - - 12|12 F2 RIKEN cDNA A930023M06 gene unknown 100043492 Gm14054 - - 2|2 F3 predicted gene 14054 pseudo 21917 Mm.159684 NM_011605 ENSMUSG00000019961 Tmpo 5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP - 10 C2|10 45.66 cM thymopoietin protein-coding 666620 Gm12110 - - 11|11 A4 ribosomal protein L9 pseudogene pseudo 13281 Del(14)32H Del32H - - deletion, Chr 14, Harwell 32 other 245695 Mm.336318 NM_001007577 ENSMUSG00000051224 Tceanc A630018P17Rik|Gm390 - X|X F5 transcription elongation factor A (SII) N-terminal and central domain containing protein-coding 100862470 XM_017318994 LOC100862470 - - - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like protein-coding 109280054 LOC109280054 Mm449 - - VISTA enhancer mm449 biological-region 102639939 XR_868082 Gm36134 - - 4 D2.1|4 predicted gene, 36134 ncRNA 100503026 Mm.484204 Gm19514 - - 7|7 77.99 cM predicted gene, 19514 unknown 224250 Mm.29482 NM_171826 ENSMUSG00000022744 Cldnd1 1110019C08Rik|AA407103|AI849195|AW489850|Cldn25 - 16|16 C1.2 claudin domain containing 1 protein-coding 102632080 XR_378802 Gm30247 - - 8 A2|8 predicted gene, 30247 ncRNA 74200 Mm.251800 NM_028814 ENSMUSG00000028060 2810403A07Rik A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907 - 3|3 F1 RIKEN cDNA 2810403A07 gene protein-coding 20054 Mm.643 NM_009091 ENSMUSG00000063457 Rps15 rig - 10|10 C1 ribosomal protein S15 protein-coding 100043019 Mm.484994 NM_001167165 ENSMUSG00000096513 Gm4175 Vmn1r133 - 7 A3|7 predicted gene 4175 protein-coding 382137 Mm.390169 NM_198675 ENSMUSG00000037845 Fdxacb1 D630004A14Rik - 9|9 A5.3 ferredoxin-fold anticodon binding domain containing 1 protein-coding 100039631 Mm.444567 Gm2347 - - 12 D3|12 predicted gene 2347 protein-coding 102638631 XR_384831 Gm35150 - - 16 B3|16 predicted gene, 35150 ncRNA 320426 A330075M08Rik - - 9|9 RIKEN cDNA A330075M08 gene protein-coding 112312 Hcs7 Hcs - - hepatocarcinogenesis susceptibility 7 unknown 105244456 XR_867334 Gm40061 - - 3 E1|3 predicted gene, 40061 ncRNA 74775 Mm.385020 NM_029098 ENSMUSG00000022999 Lmbr1l 1110013E13Rik|AA415653|D15Ertd735e|Limr - 15 F1|15 55.1 cM limb region 1 like protein-coding 70839 Mm.422675 NM_027571 ENSMUSG00000036353 P2ry12 2900079B22Rik|4921504D23Rik|P2Y12 - 3|3 D purinergic receptor P2Y, G-protein coupled 12 protein-coding 97411 6030427F01Rik C87132 - - RIKEN cDNA 6030427F01 gene protein-coding 100306977 Gm17082 - - 14|14 E5 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 61681 D6Mit280 - - 6 35.05 cM DNA segment, Chr 6, Massachusetts Institute of Technology 280 unknown 70580 5730478J17Rik - - - RIKEN cDNA 5730478J17 gene protein-coding 432881 Gm5466 EG432881 - 2 H4|2 poly(A) binding protein, cytoplasmic 4 pseudogene pseudo 629842 Ighv13-2 Gm15449 - 12|12 F1 immunoglobulin heavy variable 13-2 other 246162 L1Md-Gf62 GF62 - - L1 repeat, Gf subfamily, member 62 other 100038497 Mm.436945 XR_001778233 Gm10603 - - 7 E2|7 predicted gene 10603 ncRNA 73824 Mm.28311 NR_024067 ENSMUSG00000098234 Snhg6 1110008H02Rik - 1|1 A2 small nucleolar RNA host gene 6 ncRNA 102634607 XR_375985 Gm32148 - - 3 G1|3 predicted gene, 32148 ncRNA 102635246 Gm29330 - - Y|Y predicted gene 29330 protein-coding 668092 Gm8973 EG668092 - 15|15 F1 60S ribosomal protein L36 pseudogene pseudo 98586 Mm.331238 AU024699 - - - expressed sequence AU024699 unknown 97203 C76680 - - - expressed sequence C76680 unknown 105244171 XR_879873 Gm12240 - - 11 B1.3|11 33.57 cM predicted gene 12240 ncRNA 109222 Mm.38002 NM_001164763 ENSMUSG00000049404 Rarres1 5430417P09Rik|AI662122 - 3|3 E1 retinoic acid receptor responder (tazarotene induced) 1 protein-coding 53898 Naip3-ps1 Birc1c-ps1 - 13 D1|13 53.08 cM NLR family, apoptosis inhibitory protein 3, pseudogene 1 pseudo 105246278 Mm.206588 NR_130960 ENSMUSG00000097119 B230354K17Rik - - 17|17 B3 RIKEN cDNA B230354K17 gene ncRNA 109901 Mm.2131 NM_033612 ENSMUSG00000023031 Cela1 1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF - 15 F1|15 56.38 cM chymotrypsin-like elastase family, member 1 protein-coding 52249 D5Ertd301e - - 5 33.63 cM DNA segment, Chr 5, ERATO Doi 301, expressed protein-coding 100038847 Mm.443041 NM_001164727 ENSMUSG00000093985 Gm10406 - - 14|14 A1 predicted gene 10406 protein-coding 791341 Mm.482684 Gm9990 - - - predicted gene 9990 unknown 28138 Mm.154643 D7Ucla2 - - - DNA segment, Chr 7, University of California at Los Angeles 2 unknown 12339 Mm.201535 NM_009796 ENSMUSG00000021893 Capn7 AU022319|PalBH - 14|14 B calpain 7 protein-coding 667621 Mm.449954 Igkv4-77 EG667621|Gm8732|aj4 - 6 C1|6 immunoglobulin kappa variable 4-77 pseudo 114345 Adip5 - - 9 42.65 cM adiposity 5 unknown 111764 Iapls2-9 - - - intracisternal A particle, lymphocyte specific 2-9 other 235623 Mm.288741 NM_001001144 ENSMUSG00000032485 Scap 9530044G19|mKIAA0199 - 9 F2|9 59.91 cM SREBF chaperone protein-coding 100040416 XR_867328 ENSMUSG00000059776 Rpl13-ps6 Gm10071 - 3 D|3 28.88 cM ribosomal protein L13, pseudogene 6 pseudo 61235 D1Mit258 - - 1 50.34 cM DNA segment, Chr 1, Massachusetts Institute of Technology 258 unknown 102632819 Gm30795 - - 10|10 predicted gene, 30795 pseudo 60842 D5Mit52 - - 5 28.02 cM DNA segment, Chr 5, Massachusetts Institute of Technology 52 unknown 493138 Lxw4 - - 5 28.24 cM lupus BXSB x NZW 4 unknown 27406 Mm.27135 NM_013852 ENSMUSG00000003234 Abcf3 AI326318|AU016058|BB119416 - 16 A3|16 12.46 cM ATP-binding cassette, sub-family F (GCN20), member 3 protein-coding 105243680 XR_882302 Gm39511 - - X A5|X predicted gene, 39511 ncRNA 75540 Mm.35218 NM_029330 ENSMUSG00000053870 Fpgt 1700016E03Rik - 3|3 H4 fucose-1-phosphate guanylyltransferase protein-coding 114060 Axtrb2 - - - anxiety-related behavior 2 unknown 60995 D2Mit175 - - - DNA segment, Chr 2, Massachusetts Institute of Technology 175 unknown 71018 Mm.410796 NR_131055 ENSMUSG00000111342 4933404K13Rik - - 10|10 B2 RIKEN cDNA 4933404K13 gene ncRNA 100126824 Mm.287977 NM_001111288 ENSMUSG00000091780 Sco2 - - 15|15 E3 SCO2 cytochrome c oxidase assembly protein protein-coding 106003270 LOC106003270 - - - enhancer region in intron 7 of Pax6 biological-region 105244892 Gm40420 - - 12|12 predicted gene, 40420 ncRNA 667060 Mm.484957 NM_001104618 ENSMUSG00000068999 Vmn2r5 EG667060 - 3|3 E1 vomeronasal 2, receptor 5 protein-coding 353342 Mm.440245 NR_002864 ENSMUSG00000106847 Peg13 - - 15|15 D3 paternally expressed 13 ncRNA 101056055 Gm29769 - - 13 A5|13 predicted gene, 29769 pseudo 77918 Mm.28425 NM_130857 ENSMUSG00000060469 Krtap19-3 A030006N06Rik|Krtap16-5 - 16|16 C3.3 keratin associated protein 19-3 protein-coding 434674 Mm.24053 NM_001013820 ENSMUSG00000063590 Slc22a28 EG434674|Gm5631 - 19|19 A solute carrier family 22, member 28 protein-coding 102465959 NR_105744 ENSMUSG00000098973 Mir6236 Gm27547|mmu-mir-6236 - 9|9 F2 microRNA 6236 ncRNA 105243864 XR_865189 Gm39595 - - 1 A3|1 predicted gene, 39595 ncRNA 268756 Mm.26207 NM_178747 ENSMUSG00000034450 Gulo 5730581M22|AU018375|BC028822|GLO|LGO|sfx|unh|unhip - 14|14 D1 gulonolactone (L-) oxidase protein-coding 668042 Gm8943 EG668042 - 19 C1|19 coiled-coil domain containing 111 pseudogene pseudo 70693 Mm.272974 NM_133911 ENSMUSG00000029090 Adgra3 3830613O22Rik|AU044632|Gpr125|Tem5-like - 5|5 B3 adhesion G protein-coupled receptor A3 protein-coding 241452 Mm.211655 NM_175512 ENSMUSG00000027068 Dhrs9 C730025I08Rik|Rdh15 - 2|2 C2 dehydrogenase/reductase (SDR family) member 9 protein-coding 231253 Mm.436542 NM_177679 ENSMUSG00000054598 9130230L23Rik - - 5|5 C3.1 RIKEN cDNA 9130230L23 gene ncRNA 66978 Mm.440216 NM_025881 ENSMUSG00000024188 Luc7l 1810045C04Rik|2410018D03Rik - 17 A3.3|17 13.09 cM Luc7-like protein-coding 231885 Mm.443311 NM_001101463 ENSMUSG00000061707 Gm4871 EG231885 - 5|5 G2 predicted gene 4871 protein-coding 18993 Mm.440553 NM_008900 ENSMUSG00000045515 Pou3f3 Brn-1|Brn1|HST011|Otf8|Skin1|urehr2 - 1 B|1 21.21 cM POU domain, class 3, transcription factor 3 protein-coding 100126228 Mm.394727 Gm9856 - - 9|9 predicted gene 9856 unknown 100035723 Tshp3 QTL-TSH2.1 - - tooth shape 3 unknown 15452 Mm.299381 NM_013556 ENSMUSG00000025630 Hprt C81579|HPGRT|Hprt1 - X A5|X 29.31 cM hypoxanthine guanine phosphoribosyl transferase protein-coding 108168421 XR_001782703 Gm46660 - - 19 D3|19 predicted gene, 46660 ncRNA 19590 Rb(6.13)3Rma Rb3Rma - - Robertsonian translocation, Chr 6 and 13, Universita di Roma 3 other 100503758 Gm19876 - - 10|10 39.72 cM predicted gene, 19876 ncRNA 108490 Ms10 MMS10 - - minisatellites detected by probe MMS10 other 72322 Mm.275039 NM_028198 ENSMUSG00000067150 Xpo5 2410004H11Rik|2700038C24Rik|AI648907|AW549301|Exp5|RanBp21|mKIAA1291 - 17|17 C exportin 5 protein-coding 70727 Mm.87660 NM_027526 ENSMUSG00000030134 Rasgef1a 6330404M18Rik|AI835194 - 6|6 F1 RasGEF domain family, member 1A protein-coding 108167939 XR_001780364 Gm46302 - - 11 E2|11 predicted gene, 46302 ncRNA 102633388 XR_387815 Gm31223 - - 8 C2|8 predicted gene, 31223 ncRNA 102636411 XR_001783959 Gm33485 - - 3 G1|3 predicted gene, 33485 ncRNA 102639872 XR_383419 Gm36082 - - 14 C1|14 predicted gene, 36082 ncRNA 52485 D5Ertd505e - - 5 89.93 cM DNA segment, Chr 5, ERATO Doi 505, expressed unknown 217031 Mm.45159 NM_172562 ENSMUSG00000018651 Tada2a AV319371|D030022J10Rik|Tada2l - 11|11 C transcriptional adaptor 2A protein-coding 105243797 XR_872226 Gm39567 - - 11 A1|11 predicted gene, 39567 ncRNA 73786 4930429L21Rik - - 4|4 RIKEN cDNA 4930429L21 gene protein-coding 100039814 Gm11258 - - 4 C3|4 eukaryotic translation initiation factor 4A1 pseudogene pseudo 320662 Mm.207779 NM_177222 ENSMUSG00000043541 Casc1 A230084G12Rik|Las1 - 6 G3|6 77.37 cM cancer susceptibility candidate 1 protein-coding 240754 Mm.36534 NM_172842 ENSMUSG00000051998 Lax1 A530029E09|E430019B13Rik - 1|1 E4 lymphocyte transmembrane adaptor 1 protein-coding 112196 Scc3 - - 1 89.54 cM colon tumor susceptibility 3 unknown 102639501 Gm35802 - - 8|8 predicted gene, 35802 ncRNA 102465769 NR_106127 ENSMUSG00000098764 Mir7667 Gm27756|mmu-mir-7667 - 17|17 A3.3 microRNA 7667 ncRNA 665741 Gm7763 EG665741 - 12 C1|12 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 402772 C130098B18Rik - - 15|15 RIKEN cDNA C130098B18 gene protein-coding 69443 Mm.484042 NR_040581 ENSMUSG00000111422 1700027J07Rik - - 10|10 B2 RIKEN cDNA 1700027J07 gene ncRNA 100043716 Gm4602 - - 6 E1|6 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene pseudo 66218 Mm.322294 NM_023172 ENSMUSG00000022354 Ndufb9 1190008J14Rik - 15|15 D1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 protein-coding 170780 Mm.52281 NM_130905 ENSMUSG00000040197 Cd209e SIGNR4|mSIGNR4 - 8|8 A1.1 CD209e antigen protein-coding 76699 Mm.396145 1700003I16Rik Gm44368 - 6|6 RIKEN cDNA 1700003I16 gene protein-coding 102637464 XR_380167 Gm34267 - - 10 A3|10 predicted gene, 34267 ncRNA 668940 Mm.469980 NM_001085378 ENSMUSG00000074652 Myh7b Myh14 - 2|2 H1 myosin, heavy chain 7B, cardiac muscle, beta protein-coding 51837 DXGgc5e - - - DNA segment, Chr X, G. Consalez 5, expressed unknown 105243070 Gm39100 - - 7|7 predicted gene, 39100 ncRNA 102465185 NR_105778 ENSMUSG00000098607 Mir6360 Gm27296|mmu-mir-6360 - 18|18 A2 microRNA 6360 ncRNA 114718 Skull10 E7.2|QTL-S7.2 - 7 57.21 cM skull morphology 10 unknown 20197 Mm.440044 NM_011310 ENSMUSG00000001021 S100a3 S100E - 3 F1|3 39.26 cM S100 calcium binding protein A3 protein-coding 109280085 LOC109280085 Mm771 - - VISTA enhancer mm771 biological-region 667171 XR_880564 Gm8493 - - 5|5 F predicted gene 8493 ncRNA 108168408 XR_001782655 Gm46647 - - 19 A|19 predicted gene, 46647 ncRNA 105246714 XR_878576 Gm41958 - - 1 E4|1 predicted gene, 41958 protein-coding 110340 Ped - - - preimplantation embryo development unknown 16313 In(9)Rl-p In(9)Rl|InRl - - inversion, Chr 9, Russell, proximal other 105243484 Gm11551 - - 11|11 65.48 cM predicted gene 11551 ncRNA 28006 Mm.28524 NM_026585 ENSMUSG00000024104 Washc2 A130095H06|C530005J20Rik|D6Wsu116e|Fam21 - 6 E3|6 53.76 cM WASH complex subunit 2 protein-coding 52433 D2Ertd337e - - 2 58.27 cM DNA segment, Chr 2, ERATO Doi 337, expressed unknown 108168078 XR_001780911 Gm46411 - - 13 A3.3|13 predicted gene, 46411 ncRNA 102634959 Gm15926 - - 7|7 2.43 cM predicted gene 15926 protein-coding 100035524 Ath9 - - 1 81.08 cM atherosclerosis 9 unknown 246087 Ckds - - - cystic kidney disease severity unknown 66125 Mm.29743 NM_175102 ENSMUSG00000078348 Sf3b5 10kDa|1110005L13Rik|AU043053|Sf3b10 - 10|10 A2 splicing factor 3b, subunit 5 protein-coding 50527 Mm.387108 NM_015774 ENSMUSG00000021831 Ero1l ERO1-L|Ero1a - 14|14 C1 ERO1-like (S. cerevisiae) protein-coding 12261 Mm.30049 NM_007573 ENSMUSG00000018446 C1qbp AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP - 11 B4|11 43.21 cM complement component 1, q subcomponent binding protein protein-coding 105243329 XR_879357 Gm39282 - - 8 E2|8 predicted gene, 39282 ncRNA 665658 Gm7734 EG665658 - 14 B|14 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 61322 D3Mit175 - - 3 38.8 cM DNA segment, Chr 3, Massachusetts Institute of Technology 175 unknown 111570 Xmv34 Xmv-34 - - xenotropic murine leukemia virus 34 other 171535 AF180007 111-11-79 - - DNA sequence AF180007 unknown 171278 Mm.378582 NM_134244 ENSMUSG00000069294 Vmn1r197 V1rh21 - 13|13 A3.1 vomeronasal 1 receptor 197 protein-coding 102637550 Gm28786 - - Y|Y predicted gene 28786 protein-coding 108168296 XR_001781961 Gm46557 - - 16 C3.3|16 predicted gene, 46557 ncRNA 668036 Gm8938 EG668036 - 16|16 C1.1 heterogeneous nuclear ribonucleoprotein M pseudogene pseudo 100036412 Gfpq1 - - - gonadal fat pad weight QTL 1 unknown 666258 Gm12117 - - 11|11 A4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 780928 Ighv1-48 - - 12|12 F2 immunoglobulin heavy variable V1-48 pseudo 53766 DXHXS101 C131B2R|DXPas20 - - DNA segment, Chr X, human DXS101 unknown 72273 Mm.253147 NM_001099917 ENSMUSG00000078439 Smim24 2210404O07Rik - 10|10 C1 small integral membrane protein 24 protein-coding 26451 Mm.305750 NM_011975 ENSMUSG00000046364 Rpl27a L27'|L27A|L29 - 7 E3|7 57.26 cM ribosomal protein L27A protein-coding 69578 Mm.379168 NR_152106 ENSMUSG00000070574 2310016G11Rik - - 7|7 B3 RIKEN cDNA 2310016G11 gene ncRNA 100416240 Gm17995 - - 8|8 C3 ribosomal protein S7 pseudogene pseudo 26385 Mm.10193 NM_011938 ENSMUSG00000074886 Grk6 Gprk6 - 13 B1|13 30.06 cM G protein-coupled receptor kinase 6 protein-coding 105245790 XR_874728 Gm41182 - - 14 D1|14 predicted gene, 41182 ncRNA 53298 55D13 - - - DNA segment, 55D13 Research Genetics unknown 100039303 Gm16514 - - 10 A1|10 ribosomal protein L35a pseudogene pseudo 112148 Afw5 - - - abdominal fat weight QTL 5 unknown 60968 D10Mit3 - - 10 16.53 cM DNA segment, Chr 10, Massachusetts Institute of Technology 3 unknown 105244931 XM_011241958 Gm40453 - - 7 F1|7 predicted gene, 40453 protein-coding 105245846 XR_874911 Gm41235 - - 14 E2.3|14 predicted gene, 41235 ncRNA 72544 Mm.24174 NM_028274 ENSMUSG00000109941 Exosc6 2610510N21Rik|C76919|Mtr3 - 8|8 E1 exosome component 6 protein-coding 21269 T(7;19)10Gso T10Gso - - reciprocal translocation, Chr 7 and 19, Generoso 10 other 105244016 Gm39708 - - 11|11 predicted gene, 39708 ncRNA 102465311 NR_105860 ENSMUSG00000098858 Mir6541 Gm27311|mmu-mir-6541 - 14|14 D1 microRNA 6541 ncRNA 629959 XM_006534617 Gm7020 EG629959 - 11|11 E1 predicted gene 7020 protein-coding 100504175 Mm.484435 Gm20100 - - 8|8 5.73 cM predicted gene, 20100 unknown 70934 Mm.440427 NR_038172 4931403G20Rik - - 12|12 C2 RIKEN cDNA 4931403G20 gene ncRNA 102466649 NR_105850 ENSMUSG00000104813 Mir451b mmu-mir-451b - 11|11 B5 microRNA 451b ncRNA 100043722 Gm4607 - - 7 A3|7 predicted gene 4607 pseudo 109396 Oriq4 - - X 29.31 cM ovulation rate QTL 4 unknown 435145 Mm.41289 NM_001207021 ENSMUSG00000096883 Shisa8 Orf26|ckamp39 - 15|15 E1 shisa family member 8 protein-coding 102638578 XR_382155 Gm35109 - - 13 A3.2|13 predicted gene, 35109 ncRNA 217951 Mm.387395 NM_001160385 ENSMUSG00000048004 Tmem196 Gm528 - 12|12 F2 transmembrane protein 196 protein-coding 107689 Pet1 Pex1 - - plasmacytoma expressed transcript 1 unknown 110023 Ex - - - earlier X zone degeneration unknown 414076 Mm.473092 NR_046183 ENSMUSG00000098197 BC051537 - - 17 B1|17 cDNA sequence BC051537 ncRNA 270162 Mm.259791 NM_177769 ENSMUSG00000041986 Elmod1 4831417L10|AI428506|AI834991 - 9|9 A5.3 ELMO/CED-12 domain containing 1 protein-coding 214345 Mm.28534 NM_172528 ENSMUSG00000032352 Lrrc1 A430093J20Rik|AU016091|D030059I21|mKIAA4018 - 9|9 D leucine rich repeat containing 1 protein-coding 79196 Mm.21199 NM_024289 ENSMUSG00000037606 Osbpl5 1110006M06Rik|AI462538|ORP5|Obph1|Osbp2 - 7 F5|7 88.29 cM oxysterol binding protein-like 5 protein-coding 100035024 Mgdr2 - - 5 12.94 cM muscle Gapd decay rate 2 unknown 108168771 XR_001783374 LOC108168771 - - 2 C3 uncharacterized LOC108168771 protein-coding 620016 Mm.388932 NR_033611 ENSMUSG00000100863 Gm12669 - - 4|4 C5 glutaredoxin 3 pseudogene pseudo 73290 1700042O05Rik - - 10|10 RIKEN cDNA 1700042O05 gene protein-coding 102638196 Gm34815 - - 1|1 predicted gene, 34815 protein-coding 102633892 Gm31609 - - 15|15 predicted gene, 31609 ncRNA 100038912 Mm.389813 NR_003247 ENSMUSG00000108307 Ceacam-ps1 Gm1978 - 7 A2|7 carcinoembryonic antigen-related cell adhesion molecule pseudogene 1 pseudo 666907 NM_001310331 ENSMUSG00000101389 Ms4a4a EG666907 - 19|19 A membrane-spanning 4-domains, subfamily A, member 4A protein-coding 108167831 XR_001779848 Gm46241 - - 10 D1|10 predicted gene, 46241 ncRNA 19736 Mm.41642 NM_009062 ENSMUSG00000038530 Rgs4 AA004315|AA597169|ESTM48|ESTM50 - 1 H2.3|1 76.84 cM regulator of G-protein signaling 4 protein-coding 99811 AU022297 - - - expressed sequence AU022297 unknown 21129 T(2;3)24H T24H - - reciprocal translocation, Chr 2 and 3, Harwell 24 other 74005 6330412A17Rik - - 18|18 RIKEN cDNA 6330412A17 gene protein-coding 243547 Mm.333264 NM_001033353 ENSMUSG00000030098 Grip2 - - 6|6 D1 glutamate receptor interacting protein 2 protein-coding 105245077 XR_871273 Gm40579 - - 9 F2|9 predicted gene, 40579 ncRNA 102634017 XR_374782 Gm13817 - - 2 E1|2 51.11 cM predicted gene 13817 ncRNA 111373 Emv3 Emv-3|Sev-1 - - endogenous ecotropic MuLV 3 other 21951 Mm.88364 NM_175091 ENSMUSG00000031529 Tnks 4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1 - 8 A4|8 21.16 cM tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase protein-coding 102640440 XR_387360 Gm28857 - - 1 E4|1 predicted gene 28857 ncRNA 271278 Mm.205253 NM_198172 ENSMUSG00000044361 BC024139 6230424I18Rik - 15|15 D3 cDNA sequence BC024139 protein-coding 214968 Mm.330536 NM_172537 ENSMUSG00000027200 Sema6d 1110067B02Rik|AA409156|D330011G23|mKIAA1479 - 2|2 F1 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein-coding 111241 Mm.426212 NM_001166476 ENSMUSG00000078249 Hmga1b Hmga1-rs1|Hmgi-rs1 - 11 E2|11 84.51 cM high mobility group AT-hook 1B protein-coding 330050 Mm.40655 NM_177869 ENSMUSG00000047221 Fam185a 4631428I10|AI847670 - 5|5 A3 family with sequence similarity 185, member A protein-coding 63993 Mm.155241 NM_022025 ENSMUSG00000023945 Slc5a7 CHT1 - 17|17 C solute carrier family 5 (choline transporter), member 7 protein-coding 100416764 Gm18236 - - 16|16 B2 zinc finger protein 788 pseudogene pseudo 100035101 Manln10 - - 11 5.78 cM mandible length 10 unknown 100861494 NR_046147 ENSMUSG00000095376 Gm22109 Rn5s23 - 8 E1|8 predicted gene, 22109 rRNA 105242445 Gm38710 - - 8|8 predicted gene, 38710 protein-coding 83671 Mm.26751 NM_031394 ENSMUSG00000030616 Sytl2 AI266830|Slp2|mKIAA1597 - 7|7 E1 synaptotagmin-like 2 protein-coding 105246228 Gm41540 - - 17|17 predicted gene, 41540 ncRNA 100862028 Gm21412 - - Y|Y predicted gene, 21412 protein-coding 625131 Mm.469844 NM_001103366 ENSMUSG00000091511 Vmn2r87 EG625131 - 10|10 D3 vomeronasal 2, receptor 87 protein-coding 665809 Vmn2r-ps97 EG665809|Gm7797 - 13|13 B3 vomeronasal 2, receptor, pseudogene 97 pseudo 60931 D9Mit80 - - 9 56.61 cM DNA segment, Chr 9, Massachusetts Institute of Technology 80 unknown 105242613 XR_868834 Gm38780 - - 6 A3.3|6 predicted gene, 38780 ncRNA 105245462 Gm40911 - - 13|13 predicted gene, 40911 ncRNA 108168182 XR_001781403 Gm46472 - - 14 D3|14 predicted gene, 46472 ncRNA 100861891 Mm.441727 NM_001270901 ENSMUSG00000097550 Gm21304 - - 10 D1|10 predicted gene, 21304 protein-coding 347708 Mm.18119 NM_178247 ENSMUSG00000064010 Dppa1 C77727 - 11|11 B1.1 developmental pluripotency associated 1 protein-coding 621832 XM_001473957 Nutf2-ps2 Gm10349 - 18|18 A1 nuclear transport factor 2, pseudogene 2 pseudo 100862337 LOC100862337 Rhno1p - - RAD9-HUS1-RAD1 interacting nuclear orphan 1 pseudogene pseudo 674895 Mm.317563 NM_001034865 ENSMUSG00000042567 Nek10 Gm282 - 14|14 A1-A2 NIMA (never in mitosis gene a)- related kinase 10 protein-coding 100041536 XR_001782937 LOC100041536 - - - protein FAM205A-like pseudo 102632508 Mm.117788 Gm30564 - - 15|15 predicted gene, 30564 ncRNA 100418236 Gm19090 - - 10|10 D2 proteasome (prosome, macropain) subunit, alpha type 1 pseudogene pseudo 102635827 XR_376551 Gm33070 - - 4 C7|4 predicted gene, 33070 ncRNA 12160 Mm.428950 NM_007555 ENSMUSG00000032179 Bmp5 AU023399|se - 9 D|9 42.34 cM bone morphogenetic protein 5 protein-coding 72047 Mm.41367 NM_028074 ENSMUSG00000020705 Ddx42 1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125 - 11|11 E1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 protein-coding 105245139 XR_871613 Gm40632 - - 10 B2|10 predicted gene, 40632 ncRNA 100715 Mm.242865 NM_133905 ENSMUSG00000042167 Papd4 8030446C20Rik|AI649009|GLD-2|Gld2 - 13|13 C3 PAP associated domain containing 4 protein-coding 52312 D9Ertd341e - - 9 26.02 cM DNA segment, Chr 9, ERATO Doi 341, expressed unknown 213544 Mm.489018 XR_867365 A330069K06Rik Gm618 - 3|3 E3 RIKEN cDNA A330069K06 gene ncRNA 74022 Mm.21652 NM_028720 ENSMUSG00000022536 Glyr1 2810419J22Rik|3930401K13Rik|AW545332|Npac - 16 A1|16 2.49 cM glyoxylate reductase 1 homolog (Arabidopsis) protein-coding 620592 Mm.388976 NM_001081283 ENSMUSG00000071719 Tmem28 EG620592|Fam155b|Tnen28 - X|X C3 transmembrane protein 28 protein-coding 75320 Mm.272548 NM_029250 ENSMUSG00000030275 Etnk1 1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1 - 6 G3|6 75.41 cM ethanolamine kinase 1 protein-coding 105244232 LOC105244232 - - 2 E1 60S ribosomal protein L34 pseudogene pseudo 102640803 XR_382642 Gm36785 - - 13 C1|13 predicted gene, 36785 ncRNA 19202 Mm.10105 NM_008955 ENSMUSG00000006200 Rhox6 AV213605|AW548842|Psx1 - X|X A3.3 reproductive homeobox 6 protein-coding 100416593 Gm18162 - - 3|3 predicted gene, 18162 pseudo 319211 Mm.209896 NM_199024 ENSMUSG00000041923 Nol4 1700013J13Rik|4930568N03Rik|Gm1262 - 18|18 A2 nucleolar protein 4 protein-coding 69407 NR_131051 ENSMUSG00000108409 1700025J12Rik - - 7|7 F2 RIKEN cDNA 1700025J12 gene ncRNA 73365 Mm.353031 XR_876697 1700049J03Rik - - 17|17 A3.3 RIKEN cDNA 1700049J03 gene ncRNA 102916 Mm.395538 AI451458 - - - expressed sequence AI451458 protein-coding 70443 2610300A13Rik - - 1|1 RIKEN cDNA 2610300A13 gene protein-coding 21017 T(1;2)5Ca T5Ca - - reciprocal translocation, Chr 1 and 2, Carter 5 other 16970 Mm.843 NM_008511 ENSMUSG00000030263 Lrmp D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1 - 6 G3|6 77.34 cM lymphoid-restricted membrane protein protein-coding 105244268 XR_866645 Gm39909 - - 2 E4|2 predicted gene, 39909 ncRNA 100417812 Gm18844 - - 2|2 C1.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo 14062 Mm.24816 NM_010169 ENSMUSG00000048376 F2r AI482343|Cf2r|Par1|ThrR - 13 D1|13 50.21 cM coagulation factor II (thrombin) receptor protein-coding 62463 D14Mit267 - - 14 65.42 cM DNA Segment, Chr 14 Massachusetts Institute of Technology 267 unknown 100041139 XM_011244858 ENSMUSG00000095056 Gm3159 - - 14 A1|14 predicted gene 3159 protein-coding 102637088 XR_391470 Gm33990 - - 7 B4|7 predicted gene, 33990 ncRNA 76867 Mm.226994 NM_029777 ENSMUSG00000026142 Rhbdd1 4930418P06Rik|RRP4|mRHBDD1 - 1|1 C5 rhomboid domain containing 1 protein-coding 14462 Mm.313866 NM_008091 ENSMUSG00000015619 Gata3 Gata-3|jal - 2 A1|2 6.69 cM GATA binding protein 3 protein-coding 102636199 Gm33334 - - 2|2 predicted gene, 33334 pseudo 387239 NR_029811 ENSMUSG00000092807 Mir199b Mirn199b|mir-199b - 2|2 B microRNA 199b ncRNA 16215 In(1)12Rk-p In(1)12Rk|In12Rk - - inversion, Chr 1, Roderick 12, proximal other 100042149 Mm.396155 NM_001024712 ENSMUSG00000092167 Gm3696 Gm10014 - 14|14 A1 predicted gene 3696 protein-coding 18821 Mm.34145 NM_023129 ENSMUSG00000038583 Pln Plb - 10|10 B3 phospholamban protein-coding 258320 Mm.223016 NM_146323 ENSMUSG00000075092 Olfr1232 MOR233-18 - 2|2 E1 olfactory receptor 1232 protein-coding 71920 Mm.197319 NM_053087 ENSMUSG00000035020 Epgn 2310069M11Rik|epigen - 5|5 E1 epithelial mitogen protein-coding 13608 Mm.174523 NM_010100 ENSMUSG00000003227 Edar ED1R|ED3|ED5|EDA-A1R|EDA3|dl - 10 B4|10 29.37 cM ectodysplasin-A receptor protein-coding 105245946 XR_875332 Gm41318 - - 15 B3.3|15 predicted gene, 41318 ncRNA 100040293 Mm.425148 XR_001783852 ENSMUSG00000101860 Mindy4b-ps 5330432B20Rik|BB026216|Fam188b2|Fam188b2-ps|MINDY4B - 3 D|3 MINDY lysine 48 deubiquitinase 4B, pseudogene protein-coding 665679 Gm7746 EG665679 - X|X E3 predicted gene 7746 pseudo 435615 Gm5698 EG435615 - 1|1 B THO complex 4 pseudogene pseudo 75149 Mm.399324 NR_040597 ENSMUSG00000103116 4930539M17Rik - - 3|3 A1 RIKEN cDNA 4930539M17 gene ncRNA 102639460 Gm35767 - - 14|14 predicted gene, 35767 ncRNA 102632568 Mm.448211 XR_388058 Gm16116 - - 8 E1|8 61.25 cM predicted gene 16116 ncRNA 110914 Fabp3-rs3 Fabph-rs3 - - fatty acid binding protein 3, muscle and heart, related sequence 3 protein-coding 67860 Mm.331185 NM_026416 ENSMUSG00000074457 S100a16 2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F - 3|3 F1 S100 calcium binding protein A16 protein-coding 14999 Mm.460938 NM_010387 ENSMUSG00000079547 H2-DMb1 AI385589|H-2Mb1|H2-Mb1 - 17 B1|17 17.98 cM histocompatibility 2, class II, locus Mb1 protein-coding 216991 Mm.341520 NM_172133 ENSMUSG00000020709 Adap2 Centa2 - 11 B5|11 47.56 cM ArfGAP with dual PH domains 2 protein-coding 102636543 XR_388118 Gm33579 - - 8 E1|8 predicted gene, 33579 ncRNA 639606 Gm10420 - - 6|6 predicted gene 10420 protein-coding 433281 Mm.329306 NR_151583 ENSMUSG00000101514 Gm5524 AI875557|EG433281 - 1|1 A5 predicted gene 5524 ncRNA 15898 Mm.4629 NM_008319 ENSMUSG00000032174 Icam5 CD50|ICAM-3|Icam3|TLN|Tlcn - 9 A3|9 7.7 cM intercellular adhesion molecule 5, telencephalin protein-coding 102632490 XR_382197 Gm30549 - - 13 A3.3|13 predicted gene, 30549 ncRNA 17451 Mm.459300 NM_020021 ENSMUSG00000078365 Mos c-mos - 4 A1|4 2.16 cM Moloney sarcoma oncogene protein-coding 100381256 Mm.389544 A330027G23Rik - - - RIKEN cDNA A330027G23 gene protein-coding 100252 AL022876 - - - expressed sequence AL022876 unknown 108168809 XR_001783528 LOC108168809 - - 2 H1 60S ribosomal protein L35a pseudogene pseudo 22626 Mm.68157 NM_194333 ENSMUSG00000026205 Slc23a3 SVCT3|Yspl1 - 1|1 C4 solute carrier family 23 (nucleobase transporters), member 3 protein-coding 638991 Gm13047 - - 4|4 D3 ribosomal protein S2 pseudogene pseudo 105244953 LOC105244953 - - 12 D1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 pseudogene pseudo 100035958 Hrq6 - - - heart rate QTL 6 unknown 94054 Mdm4-ps - - X E3|X 50.47 cM transformed mouse 3T3 cell double minute 4, pseudogene pseudo 67296 Mm.23957 NM_080843 ENSMUSG00000048379 Socs4 3110032M18Rik|A730004F22Rik|AI427843|AU015727|AU015859|Socs7 - 14|14 C1 suppressor of cytokine signaling 4 protein-coding 216343 Mm.31597 NM_173391 ENSMUSG00000006764 Tph2 AU043594|Ntph - 10|10 D2 tryptophan hydroxylase 2 protein-coding 72585 Mm.490405 NM_145100 ENSMUSG00000026344 Lypd1 2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1 - 1|1 E3 Ly6/Plaur domain containing 1 protein-coding 329642 Mm.384353 D930017F01 - - 3|3 C uncharacterized protein D930017F01 protein-coding 102638788 Gm35269 - - 19|19 predicted gene, 35269 ncRNA 434459 Mm.359230 NM_001013816 ENSMUSG00000079244 Gm5622 EG434459 - 14 C1|14 predicted gene 5622 protein-coding 320893 Mm.470842 NR_015515 6430562O15Rik - - 13|13 D1 RIKEN cDNA 6430562O15 gene ncRNA 107980436 Mm.255822 C2dat1 - - 3|3 CAMK2D associated transcript 1 ncRNA 110120548 LOC110120548 - - - VISTA enhancer mm1449 biological-region 102641942 Mm.416311 LOC102641942 - - - uncharacterized LOC102641942 ncRNA 100417217 Gm18456 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 61638 D8Mit233 - - 8 34.43 cM DNA segment, Chr 8, Massachusetts Institute of Technology 233 unknown 674396 Gm16465 EG668023 - X|X C2 cytidine 5'-triphosphate synthase pseudogene pseudo 171252 Mm.390562 NM_134218 ENSMUSG00000071493 Vmn1r208 V1rh9|Vmn1r208-ps - 13|13 A3.1 vomeronasal 1 receptor 208 protein-coding 77559 Mm.237099 NM_001081326 ENSMUSG00000033400 Agl 1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197 - 3|3 G1 amylo-1,6-glucosidase, 4-alpha-glucanotransferase protein-coding 258294 Mm.222994 NM_146297 ENSMUSG00000070856 Olfr1115 MOR264-20|MOR273-4P|Olfr1530-ps1 - 2|2 D olfactory receptor 1115 protein-coding 228983 Mm.253578 NM_144500 ENSMUSG00000039050 Osbpl2 C130070J12Rik|ORP-2|Orp2|mKIAA0772 - 2|2 H4 oxysterol binding protein-like 2 protein-coding 102635391 XR_866561 Gm32745 - - 2 E1|2 predicted gene, 32745 ncRNA 102634165 XR_001779159 Gm31816 - - 9 A5.3|9 predicted gene, 31816 ncRNA 102465964 NR_105847 ENSMUSG00000099161 Mir6419 Gm27713|mmu-mir-6419 - 2|2 A3 microRNA 6419 ncRNA 73540 Mm.360661 1700100M05Rik AV207906 - - RIKEN cDNA 1700100M05 gene protein-coding 57773 Mm.143771 NM_021322 ENSMUSG00000024037 Wdr4 AI415180|AI448349|D530049K22Rik|Wh - 17|17 B1 WD repeat domain 4 protein-coding 62086 D10Mit74 - - 10 66.75 cM DNA segment, Chr 10, Massachusetts Institute of Technology 74 unknown 16822 Mm.265350 NM_010696 ENSMUSG00000002699 Lcp2 AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm - 11|11 A4 lymphocyte cytosolic protein 2 protein-coding 108167523 XR_001778519 Gm46032 - - 8 A1.1|8 predicted gene, 46032 ncRNA 229588 Mm.387177 NM_001024841 ENSMUSG00000068860 Gm128 Ment|pmis1 - 3|3 F2.1 predicted gene 128 protein-coding 71000 Mm.399410 NR_045503 ENSMUSG00000097775 4931440J10Rik - - 14|14 D1 RIKEN cDNA 4931440J10 gene ncRNA 109426 Bslm3 - - - basal locomotor activity 3 unknown 257836 Olfr660-ps1 EG257836|GA_x5J8B7W3SPQ-80592-80214|MOR40-18_p|Olfr660 - 7|7 E3 olfactory receptor 660, pseudogene 1 pseudo 112279 Pas4 - - 9 46.55 cM pulmonary adenoma susceptibility 4 unknown 20498 Mm.292447 NM_009195 ENSMUSG00000017765 Slc12a4 AW546649|KCC1|RBCKCC1 - 8 D3|8 53.06 cM solute carrier family 12, member 4 protein-coding 19630 Rb(9.12)10Tu Rb10Tu - - Robertsonian translocation, Chr 9 and 12, Tubingen 10 other 100039994 Gm2541 - - 16 C3.3|16 DnaJ (Hsp40) homolog, subfamily B, member 6 pseudogene pseudo 414363 LOC414363 - - 1|1 C2 vitamin K epoxide reductase complex, subunit 1-like 1 pseudogene 4 pseudo 105243112 XR_870104 Gm39123 - - 8 A1.1|8 predicted gene, 39123 ncRNA 100503981 Gm15484 - - 5|5 53.31 cM nucleophosmin-like pseudo 108168898 XR_001783983 Gm46823 - - 3 G1|3 predicted gene, 46823 ncRNA 84568 31.MMHAP38FLC4 M-08536 - - DNA segment, 31.MMHAP38FLC4 unknown 14598 Mm.4559 NM_008116 ENSMUSG00000006345 Ggt1 CD224|GGT|GGT 1|GGT-1|Ggtp|dwg - 10|10 C1 gamma-glutamyltransferase 1 protein-coding 630618 Gm7039 - - 6 G1|6 calmodulin 2 pseudogene pseudo 234699 Mm.28979 NM_181594 ENSMUSG00000036270 Edc4 BC022641 - 8|8 D3 enhancer of mRNA decapping 4 protein-coding 76645 Mm.159753 NM_029686 ENSMUSG00000034416 Pkd1l2 1700126L06Rik - 8|8 E1 polycystic kidney disease 1 like 2 protein-coding 85228 D16Mit204 - - 16 54.7 cM DNA Segment, Chr 16, Massachusetts Institute of Technology 204 unknown 30947 Mm.282162 NM_013925 ENSMUSG00000031949 Adat1 MMADAT1 - 8|8 E1 adenosine deaminase, tRNA-specific 1 protein-coding 100043635 Gm13997 - - 2 E5|2 predicted gene 13997 protein-coding 105243473 XR_870966 Gm39387 - - 9 E2|9 predicted gene, 39387 ncRNA 15416 Mm.4822 NM_010461 ENSMUSG00000056648 Hoxb8 Hox-2.4 - 11 D|11 59.82 cM homeobox B8 protein-coding 52079 Mm.394024 D1Ertd83e - - 1 11.46 cM DNA segment, Chr 1, ERATO Doi 83, expressed unknown 100416342 Gm18054 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 76799 Mm.293096 NM_029748 ENSMUSG00000028797 Tmem234 1500002D11Rik|2510006D16Rik|4933407D05Rik - 4|4 D2.2 transmembrane protein 234 protein-coding 108964935 LOC108964935 - - - Cyp11a1 promoter region biological-region 73056 2900080J11Rik - - 3|3 RIKEN cDNA 2900080J11 gene protein-coding 258194 Olfr949-ps1 MOR171-26P - 9|9 A5.1 olfactory receptor 949, pseudogene 1 pseudo 108168754 Mm.386100 XR_001783300 Gm13522 - - 2|2 C1.1 predicted gene 13522 ncRNA 100310 LOC100310 - - 4|4 uncharacterized LOC100310 unknown 230163 Mm.482116 NM_144903 ENSMUSG00000028307 Aldob Aldo-2|Aldo2|BC016435 - 4 B1|4 26.57 cM aldolase B, fructose-bisphosphate protein-coding 15437 Mm.280673 NM_008276 ENSMUSG00000027102 Hoxd8 4921540P06Rik|AI047735|Hox-4.3|Hox-5.4 - 2 C3|2 44.13 cM homeobox D8 protein-coding 105246137 Gm41475 - - 16|16 predicted gene, 41475 ncRNA 606537 Gm6067 EG606537|Ppia-psx_1100.1 - X|X F2 peptidylprolyl isomerase A pseudogene x_1100.1 pseudo 112163580 AU040660 - - - expressed sequence AU040660 protein-coding 18715 Mm.347478 NM_138606 ENSMUSG00000031155 Pim2 DXCch3|Pim-2 - X A1.1|X 3.55 cM proviral integration site 2 protein-coding 83559 Mm.67260 NM_031385 Tex18 - - 10|10 C1 testis expressed gene 18 ncRNA 105242715 Gm38858 - - 6|6 predicted gene, 38858 ncRNA 118453 Mm.264648 NM_080453 ENSMUSG00000020682 Mmp28 D130023P12 - 11|11 C matrix metallopeptidase 28 (epilysin) protein-coding 102640744 XR_389418 Gm36740 - - 5 E4|5 predicted gene, 36740 ncRNA 493023 Dloc2 - - 18 51.12 cM duration of locomotor activity 2 unknown 108237 Krt6-ps2 Krt2-6-ps2|mK6[Y]2 - - keratin 6, pseudogene 2 pseudo 62900 D10Mit222 - - 10 34.97 cM DNA segment, Chr 10, Massachusetts Institute of Technology 222 unknown 105246241 XR_876696 Gm41553 - - 17 A3.3|17 predicted gene, 41553 ncRNA 258883 Mm.377734 NM_146883 ENSMUSG00000066750 Olfr876 MOR161-1 - 9|9 A4 olfactory receptor 876 protein-coding 108168118 n-TIaat10 Trnai-aau|n-Ti10 - 13 A3.1|13 nuclear encoded tRNA isoleucine 10 (anticodon AAT) tRNA 625977 Gm13019 - - 4|4 D3 predicted gene 13019 pseudo 66894 Mm.390058 NM_025830 ENSMUSG00000031930 Wwp2 1300010O06Rik|AA690238|AIP2|AW554328 - 8|8 D3 WW domain containing E3 ubiquitin protein ligase 2 protein-coding 105245177 XR_873138 Gm40667 - - 13 A1|13 predicted gene, 40667 ncRNA 108116 Mm.425467 NM_023908 ENSMUSG00000025790 Slco3a1 5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11 - 7|7 D1 solute carrier organic anion transporter family, member 3a1 protein-coding 12827 Mm.181021 NM_009932 ENSMUSG00000031503 Col4a2 Col4a-2 - 8 A1.1|8 5.62 cM collagen, type IV, alpha 2 protein-coding 62648 D14Mit160 - - - DNA segment, Chr 14, Massachusetts Institute of Technology 160 unknown 270166 Mm.30088 NM_011802 ENSMUSG00000015357 Clpx AU014732|E330029I21 - 9 C|9 35.22 cM caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 102634155 XR_384266 Gm17025 - - 15 E1|15 38.09 cM predicted gene 17025 ncRNA 272551 Mm.275910 NM_178856 ENSMUSG00000031821 Gins2 2210013I18Rik|4833427B12Rik|AI323585|Pfs2 - 8|8 E1 GINS complex subunit 2 (Psf2 homolog) protein-coding 111246 Mcl1-rs1 - - - myeloid cell leukemia sequence 1, related sequence 1 pseudo 102465569 NR_105909 ENSMUSG00000098341 Mir6944 Gm27710|mmu-mir-6944 - 13|13 B1 microRNA 6944 ncRNA 102632398 XR_391146 Gm30482 - - 7 A1|7 predicted gene, 30482 ncRNA 107601 Ts3 Ts-3 - - Trichinella spiralis resistance 3 unknown 18366 Mm.377107 NM_013617 ENSMUSG00000063615 Olfr64 5'[b]2|5'beta2|MOR1-1|MOR1-2|ORL533 - 7|7 E3 olfactory receptor 64 protein-coding 69438 NR_126545 ENSMUSG00000101796 1700020D14Rik - - Ypter|Y RIKEN cDNA 1700020D14 gene ncRNA 109279863 LOC109279863 Mm49 - - VISTA enhancer mm49 biological-region 112254 Cia4 - - 2 16.73 cM collagen induced arthritis QTL 4 unknown 330767 Mm.246790 NR_151738 ENSMUSG00000110013 1190028D05Rik - - 8|8 B1.3 RIKEN cDNA 1190028D05 gene ncRNA 19356 Mm.248489 NM_011233 ENSMUSG00000021635 Rad17 MmRad24 - 13|13 D1 RAD17 checkpoint clamp loader component protein-coding 102634716 XR_877578 4930520E11Rik - - 18|18 E3 RIKEN cDNA 4930520E11 gene ncRNA 102632177 XR_386299 Gm30321 - - 18 E1|18 predicted gene, 30321 ncRNA 101471 Mm.248656 NM_207211 ENSMUSG00000038611 Phrf1 AA673488 - 7|7 F5 PHD and ring finger domains 1 protein-coding 100042639 Mm.403280 NR_152199 Gm3942 - - 10 D2|10 predicted gene 3942 ncRNA 666390 XR_140685 Gm13237 - - 4|4 E1 predicted gene 13237 pseudo 100036171 Alpq2 - - 2 44.13 cM alcohol preference QTL 2 unknown 19264 Mm.391573 NM_011210 ENSMUSG00000026395 Ptprc B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc - 1 E4|1 60.73 cM protein tyrosine phosphatase, receptor type, C protein-coding 77420 Mm.450373 C030032G21Rik - - 4|4 RIKEN cDNA C030032G21 gene protein-coding 669393 XM_001473319 Gm9457 - - 8 A1.1|8 predicted gene 9457 protein-coding 61068 D3Mit237 - - 3 3.18 cM DNA segment, Chr 3, Massachusetts Institute of Technology 237 unknown 75197 Mm.234091 NR_153831 ENSMUSG00000113906 4930529N20Rik - - 13|13 A3.3 RIKEN cDNA 4930529N20 gene ncRNA 53422 Mm.29286 NM_016875 ENSMUSG00000018554 Ybx2 Msy2 - 11|11 B3 Y box protein 2 protein-coding 102640608 Mm.399138 NR_126483 ENSMUSG00000108480 Gm36633 - - 7 D1|7 predicted gene, 36633 ncRNA 70989 Mm.335087 NM_001081121 ENSMUSG00000032023 Jhy 4931429I11Rik|BB239335 - 9|9 A5.1 junctional cadherin complex regulator protein-coding 100035080 W10q2 - - - weight 10 weeks QTL 2 unknown 240725 Mm.45563 NM_172294 ENSMUSG00000016918 Sulf1 AI467640|AW121680|mKIAA1077 - 1|1 A3 sulfatase 1 protein-coding 102641355 Gm38550 - - 5|5 predicted gene, 38550 ncRNA 102633376 Gm12924 - - 4 D2.2|4 57.42 cM predicted gene 12924 pseudo 620683 Vmn2r-ps68 EG620683 - 7|7 D3 vomeronasal 2, receptor, pseudogene 68 pseudo 68911 Mm.22521 NM_026869 ENSMUSG00000047824 Pygo2 1190004M21Rik - 3|3 F1 pygopus 2 protein-coding 61028 D7Mit178 - - 7 2.02 cM DNA segment, Chr 7, Massachusetts Institute of Technology 178 unknown 105245530 XR_873562 Gm40975 - - 13 B2|13 predicted gene, 40975 ncRNA 671535 Mm.373750 NM_001163575 ENSMUSG00000063268 Parp10 - - 15|15 D3 poly (ADP-ribose) polymerase family, member 10 protein-coding 102635928 XR_382586 Gm26715 - - 13 B3|13 predicted gene, 26715 ncRNA 435953 Mm.480279 NM_001166715 ENSMUSG00000093986 Vmn1r120 EG435953|Gm5730 - 7|7 A3 vomeronasal 1 receptor 120 protein-coding 102467487 n-TCgca1 n-Tc1 - 6 B2.3|6 nuclear encoded tRNA cysteine 1 (anticodon GCA) tRNA 105183 Mm.395585 AI462951 - - - expressed sequence AI462951 unknown 19340 Mm.260157 NM_031874 ENSMUSG00000019066 Rab3d C130057E11Rik - 9|9 A3 RAB3D, member RAS oncogene family protein-coding 100417893 Gm18886 - - 18|18 B1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 pseudogene pseudo 51929 Mm.410481 D1Ertd704e - - 1 83.48 cM DNA segment, Chr 1, ERATO Doi 704, expressed protein-coding 13637 Mm.1478 NM_007909 ENSMUSG00000003070 Efna2 CEK7L|Elf1|Epl6|Eplg6|Lerk6 - 10 C1|10 39.72 cM ephrin A2 protein-coding 109279962 LOC109279962 Mm428 - - VISTA enhancer mm428 biological-region 170624 Mm.406761 Dep1 - - 17|17 A1 diabetic embryopathy 1 ncRNA 57252 Mm.377131 NM_020501 ENSMUSG00000051153 Tas2r105 T2R05|T2R9|T2r5|Tas2r5|mGR05|mt2r5 - 6 F3|6 63.53 cM taste receptor, type 2, member 105 protein-coding 18358 Mm.248950 NM_011001 ENSMUSG00000058659 Olfr58 IG6|MOR146-3|MOR146-7P - 9|9 A3 olfactory receptor 58 protein-coding 102636608 XR_881863 Gm33626 Gm44614 - 7 A3|7 predicted gene, 33626 ncRNA 100417574 Gm14125 - - 2|2 G3 mitochondrial ribosomal protein L47 pseudogene pseudo 110799 Scom - - - scopolamine modification of exploratory activity protein-coding 100316669 NR_035419 ENSMUSG00000080406 Mir1188 Mirn1188|mir-1188|mmu-mir-1188 - 12 F1|12 60.43 cM microRNA 1188 ncRNA 102637891 Gm34587 - - 6|6 predicted gene, 34587 ncRNA 102642773 XR_865567 Gm38631 - - 1 C4|1 predicted gene, 38631 ncRNA 100775176 Ighv8-15 - - 12 F2|12 immunoglobulin heavy variable V8-15 pseudo 100035679 Skts15 - - - skin tumor susceptibility 15 unknown 102640491 XR_385242 Gm36537 - - 17 A1|17 predicted gene, 36537 ncRNA 74203 Mm.255649 NM_023743 ENSMUSG00000020454 Eif4enif1 2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e - 11 A1|11 2.24 cM eukaryotic translation initiation factor 4E nuclear import factor 1 protein-coding 61501 D2Mit1009 D7Mit221 - 2 47.95 cM DNA segment, Chr 2, Massachusetts Institute of Technology 1009 unknown 52070 D4Ertd31e - - 4 49.41 cM DNA segment, Chr 4, ERATO Doi 31, expressed unknown 102466781 NR_105957 ENSMUSG00000098293 Mir6991 Gm27966|mmu-mir-6991 - 19|19 A microRNA 6991 ncRNA 266615 Mm.450551 Svet1 - - - subventricular expressed transcript 1 unknown 100418115 Gm19008 - - 7|7 F3 ER degradation enhancer, mannosidase alpha-like 1 pseudogene pseudo 98193 Mm.159915 NM_153555 ENSMUSG00000026554 Dcaf8 AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a - 1 H3|1 79.54 cM DDB1 and CUL4 associated factor 8 protein-coding 14008 Mm.4829 NM_007959 ENSMUSG00000006311 Etv2 Etsrp71 - 7|7 B1 ets variant 2 protein-coding 545849 Igkv4-78 Gm5877|ad4 - 6|6 C1 immunoglobulin kappa variable 4-78 other 75044 Mm.445896 NR_126090 4930506A18Rik - - 8|8 D3 RIKEN cDNA 4930506A18 gene ncRNA 26875 Mm.146275 NM_011995 ENSMUSG00000061601 Pclo Acz|Pico - 5|5 A1 piccolo (presynaptic cytomatrix protein) protein-coding 108247 Rny1-ps - - - RNA, Y1 small cytoplasmic, Ro-associated, pseudogene pseudo 105243428 XR_870835 Gm39354 - - 9 B|9 predicted gene, 39354 ncRNA 319935 A230059G12Rik - - 2|2 C1.3 RIKEN cDNA A230059G12 gene unknown 100415988 Gm15273 - - X|X A3.2 predicted gene 15273 pseudo 665196 Gm7539 EG665196 - 1|1 C5 nascent polypeptide-associated complex alpha polypeptide pseudogene pseudo 380820 IghmAC38.205.12 - - 12|12 F2 Ig mu chain V region AC38 205.12 other 74465 Mm.234265 4933421H12Rik - - 19|19 RIKEN cDNA 4933421H12 gene protein-coding 105246627 XR_878080 Gm41892 - - X A1.3|X predicted gene, 41892 ncRNA 402769 C130033p17rik - - 4|4 uncharacterized LOC402769 unknown 105244250 Gm39893 - - 2|2 predicted gene, 39893 ncRNA 142983 Cbx3-ps1 EG628794|Gm6917 - 13|13 chromobox 3, pseudogene 1 pseudo 105244195 Mm.446301 XR_001783331 LOC105244195 - - 2 C3 uncharacterized LOC105244195 ncRNA 224691 Mm.328953 NM_153063 ENSMUSG00000053600 Zfp472 KRIM-1|Krim-1A|Krim-1B|Krim1 - 17|17 B1 zinc finger protein 472 protein-coding 102144 AI746383 - - - expressed sequence AI746383 unknown 105243350 XR_870556 Gm39297 - - 9 A2|9 predicted gene, 39297 ncRNA 100861855 Mm.421438 Gm16170 - - 11|11 28.82 cM predicted gene 16170 ncRNA 15289 Mm.207047 NM_010439 ENSMUSG00000066551 Hmgb1 HMG-1|Hmg1|SBP-1|p30 - 5 G3|5 89.18 cM high mobility group box 1 protein-coding 448986 Mm.215034 Pnet-ps Et20|Pnet1 - 18|18 B2 prenatal ethanol induced mRNA, pseudogene unknown 11837 Mm.5286 NM_007475 ENSMUSG00000067274 Rplp0 36B4|Arbp|L10E - 5|5 F ribosomal protein, large, P0 protein-coding 116903 Mm.273838 NM_054084 ENSMUSG00000030666 Calcb CGRP2|Calc2 - 7|7 F1 calcitonin-related polypeptide, beta protein-coding 102638185 XR_386627 Gm34808 - - 19 C1|19 predicted gene, 34808 ncRNA 68852 Mm.265792 NM_001013019 ENSMUSG00000071656 Lrrn4cl 1110067I12Rik - 19|19 A LRRN4 C-terminal like protein-coding 73732 Mm.490076 XM_011242634 ENSMUSG00000109564 Muc16 1110008I14Rik|Ca125|Gm1480|Gm21044 - 9|9 A2 mucin 16 protein-coding 100038582 Mm.484374 XR_140973 Gm10824 - - 10 A3|10 predicted gene 10824 unknown 100036365 Etax5 - - - ethanol induced ataxia 5 unknown 100503178 Mm.294938 NR_045268 ENSMUSG00000099881 2810013P06Rik - - 8|8 E1 RIKEN cDNA 2810013P06 gene ncRNA 28146 Mm.29702 NM_030685 ENSMUSG00000027808 Serp1 D3Ucla1|Ramp4 - 3 D|3 28.58 cM stress-associated endoplasmic reticulum protein 1 protein-coding 54711 Mm.103199 NM_018807 ENSMUSG00000051413 Plagl2 AU018672|AW552839|mKIAA0198 - 2|2 H1 pleiomorphic adenoma gene-like 2 protein-coding 19400 Mm.1272 NM_009023 ENSMUSG00000002104 Rapsn 43kDa|Nraps|Raps|rapsyn - 2 E1|2 50.44 cM receptor-associated protein of the synapse protein-coding 102467311 n-TGgcc6 n-Tg27 - 13 A3.1|13 nuclear encoded tRNA glycine 6 (anticodon GCC) tRNA 18438 Mm.290884 NM_011026 ENSMUSG00000029470 P2rx4 AI504491|AW555605|D5Ertd444e|P2X4 - 5 F|5 62.53 cM purinergic receptor P2X, ligand-gated ion channel 4 protein-coding 69356 Mm.393775 NR_126075 ENSMUSG00000100372 1700003I22Rik - - 1|1 C1.3 RIKEN cDNA 1700003I22 gene ncRNA 632216 Gm15476 EG632216 - 6|6 G1 zinc finger protein 707 pseudogene pseudo 105746 AA517844 - - - expressed sequence AA517844 unknown 101055736 Gm38433 - - 5 E5|5 predicted gene, 38433 pseudo 278255 Mm.303203 NM_207524 ENSMUSG00000068149 Tex13c3 Gm720 - X|X A1.3 TEX13 family member C3 protein-coding 100035246 Idd21.3 Idd21c - 18 4.46 cM insulin dependent diabetes susceptibility 21.3 unknown 259038 Mm.377802 NM_147036 ENSMUSG00000056184 Olfr283 MOR160-1 - 15|15 F1 olfactory receptor 283 protein-coding 105246914 XR_880427 LOC105246914 - - 5 E2 uncharacterized LOC105246914 ncRNA 104307 Mm.471434 NR_004432 ENSMUSG00000065176 Rnu12 - - 15 E1|15 39.4 cM RNA U12, small nuclear snRNA 668843 Gm9395 EG668843 - 14|14 E5 predicted gene 9395 pseudo 258273 Mm.377407 NM_146276 ENSMUSG00000048378 Olfr1394 MOR280-1 - 11|11 B1.2 olfactory receptor 1394 protein-coding 66082 Mm.181473 NM_025341 ENSMUSG00000025277 Abhd6 0610041D24Rik|AA673485|AV065425 - 14|14 A1 abhydrolase domain containing 6 protein-coding 100035543 Hypn - - - hyperinsulinemia unknown 384912 Gm5363 EG384912 - 9|9 A1 predicted gene 5363 pseudo 667803 Mm.477808 NM_001271005 H2-T-ps C920025E04Rik|H2-T11 - 17|17 B1 histocompatibility 2, T region locus, pseudogene protein-coding 105393 AW742391 - - - expressed sequence AW742391 unknown 230101 Mm.229444 NM_172692 ENSMUSG00000028467 Gba2 F630034E04 - 4|4 A5 glucosidase beta 2 protein-coding 17316 mic - - - microphthalmia Japan unknown 102635705 LOC102635705 - - 17 A3.3 ubiquinol-cytochrome c reductase binding protein pseudogene pseudo 100036104 Mohg2 - - - modifier of hg 2 unknown 232983 Mm.10545 NM_153576 ENSMUSG00000060188 Cxcl17 VCC-1|Vcc1 - 7|7 A3 chemokine (C-X-C motif) ligand 17 protein-coding 100861685 Gm21135 - - 7 B1|7 predicted gene, 21135 pseudo 111845 Iapls3-15 - - - intracisternal A particle, lymphocyte specific 3-15 other 52124 Mm.24513 D6Ertd439e - - 6 2.32 cM DNA segment, Chr 6, ERATO Doi 439, expressed unknown 20103 Mm.5291 NM_009095 ENSMUSG00000012848 Rps5 AA617411 - 7|7 A1 ribosomal protein S5 protein-coding 105243125 XR_870154 LOC105243125 - - 8 A1.1 uncharacterized LOC105243125 ncRNA 113863 Mm.377160 NM_053236 ENSMUSG00000115199 Vmn1r15 V1rc6 - 6|6 B3 vomeronasal 1 receptor 15 protein-coding 102637751 XR_390586 Gm34482 - - 4 B3|4 predicted gene, 34482 ncRNA 105247224 XR_881606 Gm42359 - - 4 E2|4 predicted gene, 42359 ncRNA 102634276 Gm31899 - - 8|8 predicted gene, 31899 ncRNA 108167850 XR_001780094 LOC108167850 - - 11 B5 uncharacterized LOC108167850 ncRNA 105722 Mm.38087 NM_175344 ENSMUSG00000064210 Ano6 2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f - 15|15 E3-F1 anoctamin 6 protein-coding 55994 Mm.244353 NM_019483 ENSMUSG00000027796 Smad9 MADH6|Madh8|Madh9|Smad8 - 3|3 C SMAD family member 9 protein-coding 214058 Mm.127721 NM_172522 ENSMUSG00000036466 Megf11 2410080H04Rik|D130061K05 - 9|9 C multiple EGF-like-domains 11 protein-coding 100038596 Mm.483804 Gm10435 - - - predicted gene 10435 unknown 319615 Mm.442162 NM_176962 ENSMUSG00000033972 Zfp944 6330416L07Rik - 17|17 A3.3 zinc finger protein 944 protein-coding 100036288 Tailq6 Tlq6 - - tail length QTL 6 unknown 100040502 Gm2810 - - 5 B3|5 corepressor interacting with RBPJ, 1 pseudogene pseudo 13690 Mm.185453 NM_013507 ENSMUSG00000005610 Eif4g2 DAP-5|E130105L11Rik|Nat1|Natm1|p97 - 7 E3|7 58.0 cM eukaryotic translation initiation factor 4, gamma 2 protein-coding 108167878 XR_001780153 Gm46265 - - 11 A1|11 predicted gene, 46265 ncRNA 634720 XR_001780373 Gm11735 - - 11 E2|11 predicted gene 11735 unknown 100043726 XR_168405 Gm4610 Gm42835 - 3 G1|3 predicted gene 4610 ncRNA 666703 Gm12864 - - 4|4 D2.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 320947 Mm.405349 B930082K07Rik - - 9|9 RIKEN cDNA B930082K07 gene ncRNA 70929 4921527H02Rik - - 3|3 RIKEN cDNA 4921527H02 gene protein-coding 258622 Mm.223020 NM_146629 ENSMUSG00000060017 Olfr121 MOR263-4 - 17|17 B1 olfactory receptor 121 protein-coding 102636898 XR_375823 Gm33845 - - 3 F1|3 predicted gene, 33845 ncRNA 71929 Mm.283293 NM_133739 ENSMUSG00000050912 Tmem123 2310075C12Rik - 9|9 A1 transmembrane protein 123 protein-coding 433251 Rpl13a-ps1 EG433251|Gm5520 - 19|19 D1 ribosomal protein 13A, pseudogene 1 pseudo 100041505 Mm.491824 NM_001270512 ENSMUSG00000096520 Gm3376 Rbmy1b - Y A1|Y predicted gene 3376 protein-coding 105245197 XR_871802 Gm40683 - - 10 B5.2|10 predicted gene, 40683 ncRNA 387251 NR_029527 ENSMUSG00000065406 Mirlet7i Mirnlet7i|let-7i|mmu-let-7i - 10|10 D2 microRNA let7i ncRNA 105245597 XR_873823 Gm41028 - - 13 D1|13 predicted gene, 41028 ncRNA 381293 Mm.458468 NM_001081258 ENSMUSG00000041498 Kif14 D1Ertd367e|E130203M01 - 1 E4|1 59.8 cM kinesin family member 14 protein-coding 100043953 Gm14885 - - X|X A1.3 Ssu72 RNA polymerase II CTD phosphatase homolog pseudogene pseudo 667566 Gm8707 EG667566 - 9 A5.1|9 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100316814 NR_035467 ENSMUSG00000080452 Mir1306 mmu-mir-1306 - 16 A3|16 11.33 cM microRNA 1306 ncRNA 387314 Mm.137858 NM_198967 ENSMUSG00000030306 Tmtc1 Arg99|BC023818 - 6|6 G3 transmembrane and tetratricopeptide repeat containing 1 protein-coding 100040706 Gm15312 - - 8 A2|8 ribosomal protein L21 pseudogene pseudo 667204 Gm8513 EG667204 - 13|13 A5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 360087 D17Jcs41 - - - DNA segment, Chr 17, John C. Schimenti 41 unknown 668344 Gm9116 EG668344 - 3|3 F2.1 TD and POZ domain containing pseudogene pseudo 15384 Mm.256875 NM_010448 ENSMUSG00000020358 Hnrnpab 3010025C11Rik|CBF-A|Cgbfa|Hnrpab - 11|11 B1.3 heterogeneous nuclear ribonucleoprotein A/B protein-coding 258892 Mm.377736 NM_146890 ENSMUSG00000109212 Olfr126 MOR218-1 - 17|17 B1 olfactory receptor 126 protein-coding 110120454 LOC110120454 - - - VISTA enhancer mm1090 biological-region 102640681 Mm.441804 XR_386767 Gm36693 - - 19 C3|19 predicted gene, 36693 ncRNA 246722 Gy - - - gyro deletion region unknown 66141 Mm.141021 NM_025378 ENSMUSG00000025492 Ifitm3 1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1 - 7|7 F5 interferon induced transmembrane protein 3 protein-coding 433073 Gm5492 EG433073 - 17|17 A3.2 actin related protein 2/3 complex, subunit 2 pseudogene pseudo 108252 Gapdh-ps4 Gapd-ps4|domes4 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 4 pseudo 170721 Mm.133443 NM_130887 ENSMUSG00000021223 Papln E030033C16Rik - 12|12 D1 papilin, proteoglycan-like sulfated glycoprotein protein-coding 102633151 Mm.392017 NR_153961 M5C1000I18Rik - - 9|9 C RIKEN cDNA M5C1000I18 gene ncRNA 69683 Mm.294759 NM_197991 ENSMUSG00000008140 Emc10 2310044H10Rik|5430410O10Rik|Inm02|Mirta22 - 7|7 B3 ER membrane protein complex subunit 10 protein-coding 268934 Mm.358940 NM_001013385 ENSMUSG00000063239 Grm4 Gprc1d|mGluR4 - 17|17 A3.3 glutamate receptor, metabotropic 4 protein-coding 70869 4921522A10Rik - - 14|14 RIKEN cDNA 4921522A10 gene protein-coding 100124578 Vmn2r-ps28 - - 5|5 G3 vomeronasal 2, receptor, pseudogene 28 pseudo 101055996 Gm29759 - - 7 F2|7 predicted gene, 29759 pseudo 77124 Mm.294664 NM_178400 ENSMUSG00000090330 9130221H12Rik AU016887 - 7|7 A3 RIKEN cDNA 9130221H12 gene ncRNA 668880 Mm.2289 NM_010621 ENSMUSG00000033705 Stard9 4831403C07Rik|E230025N21Rik|Kif16a|mKIAA1300 - 2|2 E5 START domain containing 9 protein-coding 668835 Rpl19-ps5 EG668835|Gm9389|Rpl19-ps - 14|14 E4 ribosomal protein L19, pseudogene 5 pseudo 77891 Mm.389787 NM_133777 ENSMUSG00000060860 Ube2s 0910001J09Rik|6720465F12Rik|AA409170|E2-EPF - 7|7 A1 ubiquitin-conjugating enzyme E2S protein-coding 192661 Sryip3 Sip3 - - Sry interacting protein 3 protein-coding 100035115 Sle18 - - - systematic lupus erythematosus susceptibility 18 unknown 67737 Mm.158172 NM_026351 ENSMUSG00000046196 Ttc39d 4930560E09Rik - 17|17 E3 tetratricopeptide repeat domain 39D protein-coding 100035399 Byln1 - - - body length 1 unknown 105243284 XR_879185 Gm39247 - - 8 D3|8 predicted gene, 39247 ncRNA 108176 Mm.431982 NR_002702 Npm3-ps1 - - 6|6 C3 nucleoplasmin 3, pseudogene 1 pseudo 100036094 Igan1 - - 10 7.27 cM IgA nephropathy 1 unknown 71521 Mm.278974 NM_027818 ENSMUSG00000029202 Pds5a 9030416H16Rik|E230024D05Rik|mKIAA0648 - 5|5 C3.1 PDS5 cohesin associated factor A protein-coding 78062 Mm.427248 NR_130987 ENSMUSG00000083193 4930595D18Rik - - 12|12 F1 RIKEN cDNA 4930595D18 gene ncRNA 232491 Mm.490474 NM_183165 ENSMUSG00000041671 Pyroxd1 - - 6|6 G2 pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding 232889 Mm.223639 NM_001004762 ENSMUSG00000033847 Pla2g4c D7Ertd445e - 7 A1|7 7.84 cM phospholipase A2, group IVC (cytosolic, calcium-independent) protein-coding 66863 Mm.161726 NM_025808 ENSMUSG00000022761 Lztr1 1200003E21Rik|AI591627|AW550890 - 16|16 A3 leucine-zipper-like transcriptional regulator, 1 protein-coding 102635967 XR_382373 Gm33168 - - 13 A5|13 predicted gene, 33168 ncRNA 100312544 Vmn1r-ps115 - - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 115 pseudo 72713 Mm.389206 NM_028333 ENSMUSG00000033544 Angptl1 2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1 - 1|1 G3 angiopoietin-like 1 protein-coding 116954 Bulb4 Bulb17a - - bulb size 4 unknown 102465710 NR_106090 ENSMUSG00000106580 Mir7231 mmu-mir-7231 - 6|6 F2 microRNA 7231 ncRNA 102633453 Gm31273 - - 1|1 predicted gene, 31273 ncRNA 105245231 XR_001779822 Gm40715 - - 10 C1|10 predicted gene, 40715 ncRNA 258078 Olfr1001-ps1 MOR175-6 - 2|2 D olfactory receptor 1001, pseudogene 1 pseudo 102466619 NR_105746 ENSMUSG00000099176 Mir6238 Gm27982|mmu-mir-6238 - 7|7 B4 microRNA 6238 ncRNA 70090 Mm.410857 NR_045498 ENSMUSG00000099446 2310005E17Rik - - 13|13 D1 RIKEN cDNA 2310005E17 gene ncRNA 239932 Mm.120273 NM_001163141 ENSMUSG00000050239 Krtap24-1 Gm312 - 16|16 C3.3 keratin associated protein 24-1 protein-coding 102636601 XR_390469 Gm33620 - - 4 A5|4 predicted gene, 33620 ncRNA 52496 D15Ertd136e - - 15 5.9 cM DNA segment, Chr 15, ERATO Doi 136, expressed unknown 108168200 XR_001781464 Gm46484 - - 14 E4|14 predicted gene, 46484 ncRNA 109439 Etlm3 - - - ethanol induced locomotion 3 unknown 109381 Lbw1 - - - lupus NZB x NZW 1 unknown 105246436 XR_877406 Gm41726 - - 18 D1|18 predicted gene, 41726 ncRNA 333830 Gm5135 EG333830 - X|X A4 ribosomal protein S7 pseudogene pseudo 27903 D16Ium62 - - 16 45.73 cM DNA segment, Chr 16, Indiana University Medical 62 unknown 108168643 XR_001782920 ENSMUSG00000101642 Gm29315 - - Y A2|Y predicted gene 29315 ncRNA 100043566 XM_017312481 ENSMUSG00000095190 Gm10668 - - 7|7 A3 predicted gene 10668 protein-coding 18407 Mm.381399 NM_013623 ENSMUSG00000028359 Orm3 Agp-3|Orm-3 - 4 B3|4 33.96 cM orosomucoid 3 protein-coding 257877 Olfr717-ps1 MOR136-18P - 13|13 D1 olfactory receptor 717, pseudogene 1 pseudo 102637359 Gm28598 - - Y|Y predicted gene 28598 ncRNA 102634199 Gm31840 - - 14|14 predicted gene, 31840 ncRNA 22193 Mm.1485 NM_009454 ENSMUSG00000027011 Ube2e3 Ubce4|ubcM2 - 2|2 C3 ubiquitin-conjugating enzyme E2E 3 protein-coding 100416202 Gm15604 - - 1|1 A2 heat shock protein 8 pseudogene pseudo 51887 D2Ertd397e - - 2 71.07 cM DNA segment, Chr 2, ERATO Doi 397, expressed unknown 68662 Mm.22802 NM_054037 ENSMUSG00000064057 Scgb3a1 HIN-1|LuLeu2|Pnsp2|UGRP2|Utgrp2 - 11 B1.2|11 29.75 cM secretoglobin, family 3A, member 1 protein-coding 330108 Mm.483383 NM_183304 Gm20558 4732457N14 - 5|5 C3.3 predicted gene, 20558 unknown 60992 D1Mit62 - - 1 83.16 cM DNA segment, Chr 1, Massachusetts Institute of Technology 62 unknown 62924 D10Mit260 - - 10 39.72 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 260 unknown 108168614 XM_017318821 ENSMUSG00000095508 LOC108168614 - - Y A1 Y-linked testis-specific protein 1-like protein-coding 208055 Gm4751 EG208055 - 5|5 A1 predicted gene 4751 pseudo 108222 Tcrg-V1ps1 - - - T cell receptor gamma, variable 1, pseudogene 1 pseudo 640524 XM_006500537 Sptbn5 EG640524|Gm354|Spnb5 - 2|2 E5 spectrin beta, non-erythrocytic 5 protein-coding 69269 Mm.182944 NM_027013 ENSMUSG00000092607 Scnm1 3110001I17Rik|Scnm1-ps - 3 F2.1|3 40.74 cM sodium channel modifier 1 protein-coding 69367 Mm.272727 NM_023505 ENSMUSG00000018196 Glrx2 1700010P22Rik|AI645710|Grx2 - 1 F|1 62.53 cM glutaredoxin 2 (thioltransferase) protein-coding 108167814 XM_017314179 LOC108167814 - - 10 B4 uncharacterized LOC108167814 protein-coding 100040361 Gm2735 - - 9|9 B predicted gene 2735 pseudo 641121 Gm7319 EG641121 - 8|8 A4 predicted gene 7319 pseudo 328479 Mm.86095 NR_033325 ENSMUSG00000064052 Gm5089 6530402A20|C030005G22Rik|EG328479 - 14 E5|14 predicted gene 5089 ncRNA 74044 Mm.270961 NM_001013026 ENSMUSG00000033222 Ttf2 4632434F22Rik|8030447N19|AV218430 - 3|3 F2.2 transcription termination factor, RNA polymerase II protein-coding 73945 Mm.34348 NM_001081164 ENSMUSG00000036990 Otud4 4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046 - 8 C1|8 37.74 cM OTU domain containing 4 protein-coding 108962 Mm.441347 4833441D16Rik AA409766 - - RIKEN cDNA 4833441D16 gene protein-coding 28265 D10Jhu50 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 50 unknown 100093692 Trnag-gcc - - - transfer RNA glycine (anticodon GCC) tRNA 60827 D4Mit72 - - 4 62.53 cM DNA segment, Chr 4, Massachusetts Institute of Technology 72 unknown 108168191 Gm46475 - - 14 C1|14 DNA repair protein SWI5 homolog pseudogene pseudo 102633144 XR_373392 Gm31046 - - 1 C1.1|1 predicted gene, 31046 ncRNA 100035505 Brwq1 - - - brain weight QTL 1 unknown 71228 Mm.68971 NM_027726 ENSMUSG00000021782 Dlg5 4933429D20Rik|T25557|mKIAA0583 - 14|14 A3 discs large MAGUK scaffold protein 5 protein-coding 71355 Mm.235570 NM_027770 ENSMUSG00000028197 Col24a1 5430404K19Rik - 3|3 H2 collagen, type XXIV, alpha 1 protein-coding 102636727 XR_383797 Gm33719 - - 14 E5|14 predicted gene, 33719 ncRNA 625110 Gm6554 EG625110 - 13|13 A5 pseudouridylate synthase 7 homolog pseudogene pseudo 108167587 XR_001778765 Gm46073 - - 8 A1.1|8 predicted gene, 46073 ncRNA 240186 Mm.118257 NM_178722 ENSMUSG00000050945 Zfp438 9430031G09|9430091M14Rik|B830013J05Rik - 18|18 A1 zinc finger protein 438 protein-coding 16723 l17Wis5 l(17)-5Wis - - lethal, Chr 17, U Wisconsin 5 unknown 100035067 Lgq6 - - - late growth QTL 6 unknown 492961 Gcsfis - - - G-CSF induced splenomegaly unknown 52463 Mm.17774 NM_027384 ENSMUSG00000047146 Tet1 2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676 - 10 B4|10 32.48 cM tet methylcytosine dioxygenase 1 protein-coding 102635415 Mm.333063 NR_110440 ENSMUSG00000085412 Halr1 Gm15055|Haunt|Linchoxa1|linc-Evx1|linc-Hoxa1|linc1547 - 6 B3|6 25.4 cM Hoxa adjacent long noncoding RNA 1 ncRNA 70477 5730407O05Rik - - X|X RIKEN cDNA 5730407O05 gene protein-coding 77598 Mm.388019 5830406C21Rik - - 12|12 RIKEN cDNA 5830406C21 gene protein-coding 61760 D4Mit231 - - 4 44.81 cM DNA segment, Chr 4, Massachusetts Institute of Technology 231 unknown 636731 Mm.479999 NM_001166733 ENSMUSG00000094313 Vmn1r61 Gm7186 - 7 A1|7 vomeronasal 1 receptor 61 protein-coding 68533 Mm.181836 NM_026758 ENSMUSG00000031843 Mphosph6 1110001M01Rik|AA536809|C86426 - 8|8 E1 M phase phosphoprotein 6 protein-coding 102634803 XR_387208 Gm32302 - - 1 C5|1 predicted gene, 32302 ncRNA 606715 Gm6074 EG606715|Ppia-ps3_1528.1 - 3|3 H2 peptidylprolyl isomerase A pseudogene 3_1528.1 pseudo 320529 B130063F10Rik - - 15|15 RIKEN cDNA B130063F10 gene protein-coding 102639837 XR_387611 Gm13840 - - 5 F|5 56.1 cM predicted gene 13840 ncRNA 50753 Mm.251174 NM_015791 ENSMUSG00000038206 Fbxo8 Fbx8 - 8|8 B2 F-box protein 8 protein-coding 63022 D17Mit105 - - 17 19.58 cM DNA segment, Chr 17, Massachusetts Institute of Technology 105 unknown 666738 Gm8264 EG666738 - 10|10 C1 predicted gene 8264 pseudo 493091 Anxty Anx - 4 36.06 cM anxiety unknown 100312561 Vmn1r-ps133 - - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 133 pseudo 100504163 Gm20096 - - 18 A2|18 16.6 cM rp2 MIF pseudogene pseudo 108320 Mmv21 Mmv-21 - - MCF endogenous virus 21 other 14629 Mm.89888 NM_010295 ENSMUSG00000032350 Gclc D9Wsu168e|GLCL-H|Ggcs-hs|Glclc - 9 E1|9 43.36 cM glutamate-cysteine ligase, catalytic subunit protein-coding 27721 D1Dau25 - - - DNA segment, Chr 1, DA Underhill 25 unknown 111651 Ms6-1 - - - minisatellite-1 detected by probe 33.6 other 76299 Mm.317701 NM_029572 ENSMUSG00000028343 Erp44 1110001E24Rik|AI849526|AL033348|Txndc4 - 4|4 B1 endoplasmic reticulum protein 44 protein-coding 102631992 Mm.462982 XR_001782680 LOC102631992 - - 19 A uncharacterized LOC102631992 ncRNA 545909 Mm.469894 NM_001105071 ENSMUSG00000096658 Vmn2r39 EG545909 - 7 A1|7 vomeronasal 2, receptor 39 protein-coding 69857 Mm.81192 NR_040486 ENSMUSG00000100277 1810053B23Rik 1810008L18Rik|1810056K14Rik - 16|16 C4 RIKEN cDNA 1810053B23 gene ncRNA 503847 Mm.377124 NM_017389 ENSMUSG00000050766 Ear14 - - 14|14 C1 eosinophil-associated, ribonuclease A family, member 14 protein-coding 102635648 Mm.22337 XR_381798 Gm32934 - - 12 D2|12 predicted gene, 32934 ncRNA 108168597 XM_017318803 LOC108168597 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 22342 Mm.20472 NM_011698 ENSMUSG00000003872 Lin7b LIN-7B|MALS-2|Veli2 - 7|7 B3 lin-7 homolog B (C. elegans) protein-coding 102637819 XR_378881 ENSMUSG00000109607 Gm34533 Gm45467 - 8 A4|8 predicted gene, 34533 ncRNA 100862372 LOC100862372 - - - PRAME family member 8-like pseudo 233529 Mm.334033 NM_001010826 ENSMUSG00000051727 Kctd14 AI449310|D7Ertd760e - 7 E1|7 53.51 cM potassium channel tetramerisation domain containing 14 protein-coding 100041080 Gm20859 - - Y|Y predicted gene, 20859 protein-coding 102640207 XR_384336 Gm36330 - - 15 E3|15 predicted gene, 36330 ncRNA 112316 Tria4 - - 7 50.47 cM T cell receptor induced activation 4 unknown 61551 D9Mit151 - - 9 72.43 cM DNA segment, Chr 9, Massachusetts Institute of Technology 151 unknown 100041789 Gm20887 - - Y|Y predicted gene, 20887 protein-coding 666308 Gm8038 EG666308 - 6 B2.3|6 Crn, crooked neck-like 1 pseudogene pseudo 105243010 XR_869836 Gm39058 - - 7 E2|7 predicted gene, 39058 ncRNA 100041147 Gm14717 - - X|X A7.3 predicted gene 14717 protein-coding 76467 Mm.27166 NM_029619 ENSMUSG00000023094 Msrb2 2310050L06Rik|Mrsb|Msrb|Pilb - 2|2 A3 methionine sulfoxide reductase B2 protein-coding 723918 NR_030265 ENSMUSG00000076005 Mir547 Mirn547|mir-547|mmu-mir-547 - X|X A7.1 microRNA 547 ncRNA 628853 Vmn1r-ps53 EG628853|Gm6922 - 7|7 A1 vomeronasal 1 receptor, pseudogene 53 pseudo 74393 Mm.41709 NM_028908 ENSMUSG00000050930 Map10 4933403G14Rik|AI835009|mKIAA1383 - 8|8 E2 microtubule-associated protein 10 protein-coding 606496 Mm.491101 NM_001031667 ENSMUSG00000057177 Gsk3a 2700086H06Rik - 7|7 A3 glycogen synthase kinase 3 alpha protein-coding 100417262 Gm18488 - - 9|9 A1 crumbs homolog 1 pseudogene pseudo 100047133 Mm.447052 NR_037980 ENSMUSG00000097899 Gm16894 - - 1|1 B predicted gene, 16894 ncRNA 61483 D7Mit150 - - 7 58.12 cM DNA segment, Chr 7, Massachusetts Institute of Technology 150 unknown 667253 Gm8539 - - 5 A3|5 predicted gene 8539 protein-coding 332175 Mm.327852 NM_001007460 ENSMUSG00000036304 Zdhhc23 Gm1751|Gm779|nidd - 16|16 B4 zinc finger, DHHC domain containing 23 protein-coding 11520 Mm.381 NM_007408 ENSMUSG00000028494 Plin2 AA407157|ADPH|Adfp|Adrp - 4 C4|4 40.69 cM perilipin 2 protein-coding 102635270 Gm32653 - - 5|5 predicted gene, 32653 ncRNA 233071 Mm.190704 NM_178252 ENSMUSG00000036882 Arhgap33 AW324378|NOMA-GAP|Snx26|TCGAP - 7|7 B1 Rho GTPase activating protein 33 protein-coding 118446 Mm.332771 NM_080450 ENSMUSG00000056966 Gjc3 Cx29|Gje1 - 5|5 G2 gap junction protein, gamma 3 protein-coding 100312574 Vmn1r-ps149 - - 17 A3.2|17 vomeronasal 1 receptor, pseudogene 149 pseudo 106842 AA407787 - - - expressed sequence AA407787 protein-coding 102467620 n-TVcac1 n-Tv9 - 3 D|3 nuclear encoded tRNA valine 1 (anticodon CAC) tRNA 66427 Mm.20242 NM_025558 ENSMUSG00000031924 Cyb5b 1810044O22Rik|AU015618|Cyb5m - 8|8 D3 cytochrome b5 type B protein-coding 14570 Mm.1383 NM_008113 ENSMUSG00000073433 Arhgdig Gdi5|RIP2|Rho-GDI-3|Rho-GDI2 - 17|17 A3.3 Rho GDP dissociation inhibitor (GDI) gamma protein-coding 665526 Gm7674 EG665526 - 18|18 E4 TNF receptor-associated factor 7 pseudogene pseudo 257781 Olrf445-ps1 EG257781|GA_x5J8B7W6337-1014614-1015483|Gm5008|Olfr445-ps1|Olrf445 - 6 B2.1|6 olfactory receptor 445, pseudogene 1 pseudo 77279 NM_183122 9430019C24Rik - - 8|8 B1.1 RIKEN cDNA 9430019C24 gene protein-coding 102636536 XR_382385 Gm33574 - - 13 B1|13 predicted gene, 33574 ncRNA 666502 Gm8138 EG666502 - 14|14 C1 predicted gene 8138 protein-coding 100041017 Gm14694 - - X|X A7.3 predicted gene 14694 pseudo 383464 Gm5248 EG383464 - 19|19 C2 proteasome (prosome, macropain) subunit, alpha type 5 pseudogene pseudo 18566 Mm.5024 NM_008798 ENSMUSG00000026285 Pdcd1 Ly101|PD-1|Pdc1 - 1|1 D programmed cell death 1 protein-coding 100217432 NR_028532 Snord71 MBII-239 - 8 D3|8 small nucleolar RNA, C/D box 71 snoRNA 230143 Mm.297004 Gm568 - - 4|4 B1 predicted gene 568 protein-coding 320986 Mm.18110 A630040H13Rik AA571246 - 3|3 RIKEN cDNA A630040H13 gene protein-coding 100862416 LOC100862416 - - - protein Mis18-beta-like pseudo 622117 Mm.390031 NM_001160412 ENSMUSG00000091490 Triml2 EG622117|Tu4 - 8|8 A4 tripartite motif family-like 2 protein-coding 171272 Mm.377224 NM_134238 ENSMUSG00000061376 Vmn1r219 V1rh13 - 13|13 A3.1 vomeronasal 1 receptor 219 protein-coding 102639181 XR_380299 Gm35552 - - 10 B2|10 predicted gene, 35552 ncRNA 100039053 XM_001472168 ENSMUSG00000094661 Gm2023 - - 4 A5|4 predicted gene 2023 protein-coding 258942 Mm.377761 NM_146940 ENSMUSG00000053146 Olfr352 MOR136-10 - 2|2 B olfactory receptor 352 protein-coding 257982 Olfr721-ps1 MOR274-3P|MOR274-4_i - 14|14 A1 olfactory receptor 721, pseudogene 1 pseudo 105244031 XR_001779579 Gm39717 - - 1 H4|1 predicted gene, 39717 ncRNA 11982 Mm.135129 NM_009728 ENSMUSG00000025324 Atp10a Atp10c|pfatp - 7|7 B5 ATPase, class V, type 10A protein-coding 21079 T(13;17)1Lub T1Lub - - reciprocal translocation, Chr 13 and 17, Lubeck 1 other 108169187 Gm44003 - - 6 G1|6 cyclin-dependent kinase 4 pseudogene pseudo 102634331 XR_381410 Gm31939 - - 12 A2|12 predicted gene, 31939 ncRNA 751550 NR_030468 ENSMUSG00000070127 Mir146b Mirn146b|mir-146b - 19 C3|19 microRNA 146b ncRNA 69317 Mm.331893 NM_027036 ENSMUSG00000048686 Hmgb4 1700001F22Rik|AI326135 - 4|4 D2.2 high-mobility group box 4 protein-coding 735298 LOC735298 - - 9|9 B uncharacterized LOC735298 unknown 66871 Mm.290991 NM_025815 ENSMUSG00000052560 Cpne8 1200003E11Rik|1500031E20Rik - 15|15 E3 copine VIII protein-coding 69386 Mm.158272 NM_153173 ENSMUSG00000060981 Hist1h4h 1700024H08Rik - 13|13 A3.1 histone cluster 1, H4h protein-coding 108168565 XM_017318768 LOC108168565 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 108663991 LOC108663991 - - 11 D ES cell cis-regulatory motifs 1a, 3b and 9b biological-region 108167387 XM_017318885 LOC108167387 - - - nuclear body protein SP140-like protein protein-coding 62342 D19Mit83 - - 19 40.41 cM DNA segment, Chr 19, Massachusetts Institute of Technology 83 unknown 100036491 Gct8 - - 2 86.75 cM granulosa cell tumorigenesis 8 unknown 244418 Mm.244971 NM_172911 ENSMUSG00000050271 Prag1 9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269 - 8 A4|8 22.78 cM PEAK1 related kinase activating pseudokinase 1 protein-coding 100416790 Gm18252 - - 10|10 B1 survival motor neuron 1 pseudogene pseudo 74888 NR_131920 ENSMUSG00000085108 Saxo1os 4930457A20Rik|Fam154aos - 4|4 C4 stabilizer of axonemal microtubules 1, opposite strand ncRNA 100038809 Slt3 - - - susceptibility to spontaneously occurring lung cancer 3 unknown 544763 Mm.450958 NM_001033981 ENSMUSG00000073063 Hbq1b F830116E18Rik|Hbqt1 - 11|11 A4 hemoglobin, theta 1B protein-coding 102467514 n-TQttg1 n-Tq11 - X A1.1|X nuclear encoded tRNA glutamine 1 (anticodon TTG) tRNA 72468 Mm.437221 2610204G07Rik - - 13|13 RIKEN cDNA 2610204G07 gene protein-coding 102467274 n-TCgca19 n-Tc19 - 6 B2.3|6 nuclear encoded tRNA cysteine 19 (anticodon GCA) tRNA 101055666 XR_389431 Gm29707 - - 5 E5|5 predicted gene, 29707 ncRNA 73966 4930449I21Rik - - 2|2 RIKEN cDNA 4930449I21 gene protein-coding 75909 Mm.390398 NM_029478 ENSMUSG00000018171 Vmp1 3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2 - 11|11 C vacuole membrane protein 1 protein-coding 12177 Mm.29820 NM_009761 ENSMUSG00000022051 Bnip3l C86132|D14Ertd719e|Nip3L|Nix - 14 D1|14 34.6 cM BCL2/adenovirus E1B interacting protein 3-like protein-coding 258617 Mm.377595 NM_146624 ENSMUSG00000070943 Olfr356 MOR134-1 - 2|2 B olfactory receptor 356 protein-coding 667307 Gm8564 EG667307 - 6|6 A3.1 predicted gene 8564 pseudo 212114 Mm.85744 NM_172501 ENSMUSG00000042997 Nhlrc3 4833441N19|8030451K01Rik|mKIAA4083 - 3|3 C NHL repeat containing 3 protein-coding 106025 Mm.41463 NM_025340 ENSMUSG00000022552 Sharpin 0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm - 15 D3|15 35.75 cM SHANK-associated RH domain interacting protein protein-coding 777663 Ighd5-6 Gm17600 - 12|12 F1 immunoglobulin heavy diversity 5-6 pseudo 14525 Mm.4799 NM_008099 ENSMUSG00000022659 Gcsam Gcet|Gcet2|M17|M17-L - 16|16 B5 germinal center associated, signaling and motility protein-coding 54450 Mm.29261 NM_019451 ENSMUSG00000026983 Il1f5 AI413231|Fil1delta|IL-36Ra|IL36RN|Il-1h3|Il1hy1 - 2 A3|2 16.31 cM interleukin 1 family, member 5 (delta) protein-coding 399608 9430088F21Rik - - - RIKEN cDNA 9430088F21 gene protein-coding 18816 Mm.279733 NM_008878 ENSMUSG00000038224 Serpinf2 AI747498|Pli|Serpimf2 - 11|11 B5 serine (or cysteine) peptidase inhibitor, clade F, member 2 protein-coding 100502859 Mm.491826 Mrgprx3-ps AdeR1|Gm19419|Gm660|Mrgprx3 - 7|7 B3 MAS-related GPR, member X3, pseudogene pseudo 100038537 Mm.483829 Gm16503 - - - predicted gene 16503 unknown 108471 Ms37 MMS37 - - minisatellites detected by probe MMS37 other 111287 Hmgn1-rs6 Hmg14-rs6 - - high mobility group nucleosomal binding domain 1, related sequence 6 pseudo 102639943 Gm29586 - - Y|Y predicted gene 29586 protein-coding 114313 Ccrs2 - - 4 57.76 cM corpus callosum hemisphere surface size 2 unknown 18998 Mm.488204 NM_138945 ENSMUSG00000024497 Pou4f3 Brn3.1|Brn3c|ddl|dreidel - 18 B3|18 22.58 cM POU domain, class 4, transcription factor 3 protein-coding 68563 Mm.272927 NM_026767 ENSMUSG00000042737 Dpm3 1110001H19Rik|AV117483 - 3|3 F1 dolichyl-phosphate mannosyltransferase polypeptide 3 protein-coding 20518 Mm.17322 NM_013667 ENSMUSG00000040966 Slc22a2 Oct2|Orct2 - 17 A1|17 8.61 cM solute carrier family 22 (organic cation transporter), member 2 protein-coding 50796 Mm.391208 NM_015826 ENSMUSG00000024837 Dmrt1 - - 19|19 B doublesex and mab-3 related transcription factor 1 protein-coding 14917 Mm.222729 NM_145067 ENSMUSG00000042638 Gucy2c AI893437|GC-C|Gcc - 6 G1|6 66.67 cM guanylate cyclase 2c protein-coding 619906 Gm11920 - - 4|4 A5 predicted gene 11920 pseudo 102640143 XR_380312 Gm36280 - - 10 B3|10 predicted gene, 36280 ncRNA 100039239 Mm.44882 NR_045098 Gm2115 C77713 - 7 D3|7 predicted gene 2115 ncRNA 60711 D6Mit83 - - 6 5.65 cM DNA segment, Chr 6, Massachusetts Institute of Technology 83 unknown 112134 Bglq15 - - 14 31.49 cM body growth late QTL 15 unknown 102631551 Mm.121590 Gm26676 - - 18|18 predicted gene, 26676 ncRNA 108169094 Gm46932 - - 5 C1|5 predicted gene, 46932 pseudo 235854 Mm.207065 NM_153524 ENSMUSG00000067173 Mrgpra4 Mgrg10|MrgA4 - 7|7 B4 MAS-related GPR, member A4 protein-coding 27260 Mm.103380 NM_013738 ENSMUSG00000021118 Plek2 - - 12|12 C3 pleckstrin 2 protein-coding 105243301 XR_879241 Gm39261 - - 8 E1|8 predicted gene, 39261 ncRNA 668789 Gm9362 EG668789 - 7|7 B4 phosphopantothenoylcysteine synthetase pseudogene pseudo 105244468 XR_867357 Gm40070 - - 3 E1|3 predicted gene, 40070 ncRNA 102465588 NR_105939 ENSMUSG00000098291 Mir6973a Gm27967|mmu-mir-6973a - 17|17 B1 microRNA 6973a ncRNA 100038389 Mm.119758 Gm10286 - - - predicted gene 10286 unknown 382202 Mm.322606 LOC382202 - - - uncharacterized LOC382202 protein-coding 56047 Mm.17510 NM_018857 ENSMUSG00000063011 Msln MPF - 17|17 A3.3 mesothelin protein-coding 330217 Mm.332774 NM_001033416 ENSMUSG00000075593 Gal3st4 1500031A01Rik - 5|5 G2 galactose-3-O-sulfotransferase 4 protein-coding 329278 Mm.90140 NM_177839 ENSMUSG00000026725 Tnn TN-W|Tnw|tenascin-W - 1|1 H1-H2.1 tenascin N protein-coding 666027 Gm7896 - - 13 B3|13 predicted gene 7869 protein-coding 102635125 XR_390553 Gm32544 - - 4 B1|4 predicted gene, 32544 ncRNA 19602 Rb(6.7)13Rma Rb13Rma - - Robertsonian translocation, Chr 6 and 7, Universita di Roma 13 other 100041071 Gm13496 - - 2|2 B predicted gene 13496 protein-coding 246103 Mm.133625 NM_139227 ENSMUSG00000021738 Atxn7 A430107N12Rik|AI627028|Sca7|ataxin-7 - 14|14 A1 ataxin 7 protein-coding 102638040 Gm15515 - - 14|14 46.96 cM predicted gene 15515 pseudo 11529 Mm.8473 NM_009626 ENSMUSG00000055301 Adh7 AI325182|Adh-3|Adh-3e|Adh-3t|Adh3|Adh3-e|Adh3-t|Adh4|Adt-1 - 3 G3|3 64.13 cM alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 26364 Mm.334648 NM_011925 ENSMUSG00000002885 Adgre5 AA409984|Cd97|TM7LN1 - 8 C2|8 40.22 cM adhesion G protein-coupled receptor E5 protein-coding 14356 Mm.220330 NM_019502 ENSMUSG00000089847 Timm10b Fxc1|Tim10b|Tim9b - 7|7 E3 translocase of inner mitochondrial membrane 10B protein-coding 212733 Mm.59997 NM_153784 ENSMUSG00000043782 Bicdl2 BICDR-2|Ccdc64b - 17|17 A3.3 BICD family like cargo adaptor 2 protein-coding 67169 Mm.46680 NM_026012 ENSMUSG00000032491 Nradd 2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD - 9|9 F2 neurotrophin receptor associated death domain protein-coding 100041616 Gm3433 - - 8|8 A4 testis expressed gene 24 pseudogene pseudo 668022 Gm8930 EG668022 - 6|6 A3.1 polycomb group ring finger 1 pseudogene pseudo 102632943 XR_386404 Gm30889 - - 18 E3|18 predicted gene, 30889 ncRNA 111907 Iap5rb5 - - - intracisternal A-type particle, U5 region, SINE repeat b-5 other 243362 Mm.209272 NM_146258 ENSMUSG00000016128 Stard13 DLC2|GT650 - 5|5 G3 StAR-related lipid transfer (START) domain containing 13 protein-coding 21085 T(14;18)12Ad T12Ad - - reciprocal translocation, Chr 14 and 18, Adler 12 other 791338 Mm.204722 NR_028385 Gm10190 - - 17 E3|17 predicted gene 10190 ncRNA 723939 NR_030154 ENSMUSG00000070104 Mir471 Mirn471|mir-471|mmu-mir-471 - X A7.1|X microRNA 471 ncRNA 85233 D18Mit231 - - 18 13.1 cM DNA Segment, Chr 18, Massachusetts Institute of Technology 231 unknown 108169110 Gm46938 - - 5 D|5 predicted gene, 46938 pseudo 105246171 Mm.406356 XR_882544 Gm41505 - - 16 C4|16 predicted gene, 41505 ncRNA 100418419 Gm12451 - - 4|4 B1 predicted gene 12451 pseudo 110833 Fzd2-rs1 Fz2-rs1 - - frizzled class receptor 2, related sequence 1 protein-coding 107080631 Tyr-lcr DRE - 7 D3-E1 tyrosinase locus control region biological-region 59050 Mm.390634 NM_021552 ENSMUSG00000060739 Nsa2 5730427N09Rik|LNR42|Nsa2p|Tinp1|Yr29 - 13|13 D1 NSA2 ribosome biogenesis homolog protein-coding 74712 Mm.399246 NR_045966 ENSMUSG00000097841 4930511A02Rik - - 12|12 A1.1 RIKEN cDNA 4930511A02 gene ncRNA 27947 D10Nds1 - - - DNA segment, Chr 10, Nuffield Department of Surgery 1 unknown 102639719 XR_874497 LOC102639719 - - 14 B uncharacterized LOC102639719 ncRNA 102465545 NR_105870 ENSMUSG00000099181 Mir6905 Gm27879|mmu-mir-6905 - 10|10 A4 microRNA 6905 ncRNA 675566 Rps19-ps8 Gm9646 - 5 F|5 ribosomal protein S19, pseudogene 8 pseudo 62157 D14Mit39 - - 14 35.69 cM DNA segment, Chr 14, Massachusetts Institute of Technology 39 unknown 13144 Mm.10294 NM_007828 ENSMUSG00000034974 Dapk3 ZIPK|dlk - 10 C1|10 39.72 cM death-associated protein kinase 3 protein-coding 219181 Mm.89413 NM_001164503 ENSMUSG00000022016 Akap11 6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629 - 14|14 D3 A kinase (PRKA) anchor protein 11 protein-coding 52751 D15Wsu192e - - - DNA segment, Chr 15, Wayne State University 192, expressed unknown 102633233 XR_378937 Gm31111 - - 8 B1.1|8 predicted gene, 31111 ncRNA 111173 Mm.288860 NM_053204 ENSMUSG00000030172 Erc1 4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081 - 6|6 F1 ELKS/RAB6-interacting/CAST family member 1 protein-coding 667421 Gm16443 EG667173|EG667421|Gm8622 - 7|7 A3 predicted gene 16443 pseudo 102636083 NR_110437 ENSMUSG00000102590 Mannr Manr - 3 A3|3 Mecom adjacent non-protein coding RNA ncRNA 27534 D0Mnp4 MUS235-2 - - DNA segment, Montpellier 4 unknown 102633283 XR_390442 Gm31145 - - 4 A3|4 predicted gene, 31145 ncRNA 16987 Mm.55075 NM_146006 ENSMUSG00000033105 Lss 2810025N20Rik|D10Ertd116e|Osc - 10 C1|10 39.1 cM lanosterol synthase protein-coding 108168152 XR_001781238 Gm8126 EG666481 - 14|14 B predicted gene 8126 protein-coding 110450 Lmyc2 Lmyc-2 - - lung carcinoma myc related oncogene 2 protein-coding 27737 D1Ncl3 - - - DNA segment, Chr 1, Nicolas C. Levy 3 unknown 105246668 XR_878415 A930009E08Rik - - 1|1 D RIKEN cDNA A930009E08 gene ncRNA 360065 D17Jcs27 - - - DNA segment, Chr 17, John C. Schimenti 27 unknown 638068 Gm7229 EG638068 - 9|9 F4 predicted gene 7229 pseudo 666161 XM_017318652 Gm7958 EG666161 - X|X A5 predicted gene 7958 protein-coding 61537 D9Mit105 - - 9 34.04 cM DNA segment, Chr 9, Massachusetts Institute of Technology 105 unknown 102635183 Gm32586 - - 13|13 predicted gene, 32586 ncRNA 76142 Mm.308126 NM_133485 ENSMUSG00000040653 Ppp1r14c 6330514J04Rik|KEPI - 10|10 A1 protein phosphatase 1, regulatory (inhibitor) subunit 14c protein-coding 62096 D11Mit61 - - 11 75.93 cM DNA segment, Chr 11, Massachusetts Institute of Technology 61 unknown 27889 D16Ium76 - - - DNA segment, Chr 16, Indiana University Medical 76 unknown 102465551 NR_105879 ENSMUSG00000098701 Mir6914 Gm27526|mmu-mir-6914 - 10|10 D3 microRNA 6914 ncRNA 258118 Olfr1460-ps1 MOR202-31P - 19|19 A olfactory receptor 1460, pseudogene 1 pseudo 56264 Mm.112701 NM_019696 ENSMUSG00000027408 Cpxm1 AA986902|Cpx-1|Cpx1|Cpxm - 2|2 F1 carboxypeptidase X 1 (M14 family) protein-coding 723840 NR_029760 ENSMUSG00000065571 Mir326 Mirn326|mir-326|mmu-mir-326 - 7|7 E1 microRNA 326 ncRNA 15527 Hspa9-ps1 70kDa|Hsc74-ps1|Hsp74-ps1|Hsp74b|Hspa9b - X A6|X 33.5 cM heat shock protein 9, pseudogene 1 pseudo 102636782 XR_376151 Gm33758 Gm42703 - 3 H1|3 predicted gene, 33758 ncRNA 50930 Mm.483369 NM_019418 ENSMUSG00000005824 Tnfsf14 HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d - 17|17 D tumor necrosis factor (ligand) superfamily, member 14 protein-coding 102639994 Gm36175 - - 18 E2|18 predicted gene, 36175 pseudo 100416059 Gm17896 - - 3|3 G1 ADNP homeobox 2 pseudogene pseudo 16841 Mm.16973 NM_010702 ENSMUSG00000021539 Lect2 - - 13 B1|13 30.08 cM leukocyte cell-derived chemotaxin 2 protein-coding 105246562 XR_877825 Gm41836 - - 19 C2|19 predicted gene, 41836 ncRNA 102638925 XR_384718 Gm35369 - - 16 A3|16 predicted gene, 35369 ncRNA 114318 Taste10 - - - taste bitterness sensitivity 10 unknown 100035584 Lprq5 - - 7 19.37 cM lipoprotein QTL 5 unknown 11701 Amd-ps1 Amd3 - X|X F3 S-adenosylmethionine decarboxylase, pseudogene 1 pseudo 100124458 NR_030545 ENSMUSG00000077851 Mir876 Mirn876|mir-876|mmu-mir-876 - 4 A5|4 microRNA 876 ncRNA 105242766 XR_869422 Gm38895 - - 6 F2|6 predicted gene, 38895 ncRNA 383275 Gm5229 EG383275 - 17|17 E2 predicted gene 5229 pseudo 212307 Mm.132237 NM_153058 ENSMUSG00000024277 Mapre2 AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1 - 18 A2|18 12.08 cM microtubule-associated protein, RP/EB family, member 2 protein-coding 435389 Rpl31-ps3 EG435389|Gm5669 - 14|14 A2 ribosomal protein L31, pseudogene 3 pseudo 85029 NR_002142 ENSMUSG00000092837 Rpph1 Gm24821|H1RNA|Rmrp5|Rpr - 14|14 C1 ribonuclease P RNA component H1 ncRNA 102632963 XR_379696 Gm30905 - - 9 E3.1|9 predicted gene, 30905 ncRNA 100526547 NR_037234 ENSMUSG00000093090 Mir3073a Mir3073|mir-3073a|mmu-mir-3073|mmu-mir-3073a - 12 F1|12 61.14 cM microRNA 3073a ncRNA 52153 D11Jkn1e D11Jkn1 - - DNA segment, Chr 11, Ian Jackson-1, expressed unknown 62583 D12Mit176 - - 12 38.41 cM DNA segment, Chr 12, Massachusetts Institute of Technology 176 unknown 62508 D10Mit178 - - 10 51.42 cM DNA segment, Chr 10, Massachusetts Institute of Technology 178 unknown 234988 Mm.17563 NM_144934 ENSMUSG00000047508 Mbd3l2 - - 9|9 A2 methyl-CpG binding domain protein 3-like 2 protein-coding 11920 Mm.5088 NM_007499 ENSMUSG00000034218 Atm AI256621|C030026E19Rik - 9 A5.3|9 29.12 cM ataxia telangiectasia mutated protein-coding 61556 D9Mit169 - - 9 54.87 cM DNA segment, Chr 9, Massachusetts Institute of Technology 169 unknown 19454 Rb(1.7)1Rma Rb1Rma - - Robertsonian translocation, Chr 1 and 7, Universita di Roma other 111433 Emv25 Emv-25 - - endogenous ecotropic MuLV 25 other 108167957 Gm46315 - - 12 A1.3|12 predicted gene, 46315 pseudo 619295 Mm.331760 NM_001033800 Lrp8os2 B230314M03Rik - 4|4 C7 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 2 ncRNA 17690 Mm.5077 NM_008629 ENSMUSG00000054256 Msi1 Msi1h|Musahi1|m-Msi-1 - 5|5 F musashi RNA-binding protein 1 protein-coding 20311 Mm.4660 NM_009141 ENSMUSG00000029371 Cxcl5 AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6 - 5 E1|5 44.78 cM chemokine (C-X-C motif) ligand 5 protein-coding 100502788 Gm13821 - - 5|5 55.99 cM predicted gene 13821 protein-coding 105242395 XR_873587 Gm38679 - - 13 B3|13 predicted gene, 38679 ncRNA 105246318 XR_876966 Gm41620 - - 17 E2|17 predicted gene, 41620 ncRNA 102639563 Gm28683 - - Y|Y predicted gene 28683 ncRNA 21009 T(1;14)1Po T1Po - - reciprocal translocation, Chr 1 and 14, Popko 1 other 11622 Mm.341377 NM_013464 ENSMUSG00000019256 Ahr Ah|Ahh|Ahre|In|bHLHe76 - 12 A3|12 15.78 cM aryl-hydrocarbon receptor protein-coding 100503946 Mm.458914 Gm10925 - - 1|1 A5 ATP synthase F0 subunit 6 pseudogene pseudo 227525 Mm.23483 NM_146114 ENSMUSG00000026648 Dclre1c 9930121L06Rik|AI661365|Art|Snm1l - 2|2 A1 DNA cross-link repair 1C protein-coding 109976 Til1 - - - T cell integration locus protein-coding 100035028 Axtq2 - - - anxiety QTL 2 unknown 70127 Mm.151308 NM_058212 ENSMUSG00000021221 Dpf3 2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4 - 12|12 D1 D4, zinc and double PHD fingers, family 3 protein-coding 102637096 XR_377093 Gm33995 - - 5 G1.3|5 predicted gene, 33995 ncRNA 100124678 Trbv14 BV13S1|Gm16910|Tcrb-V13 - 6 19.22 cM|6 B1 T cell receptor beta, variable 14 other 493057 Hdlq4 - - 15 52.36 cM HDL QTL 4 unknown 12772 Mm.6272 NM_009915 ENSMUSG00000049103 Ccr2 Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r - 9 F4|9 75.05 cM chemokine (C-C motif) receptor 2 protein-coding 108169024 Gm42834 - - 5 A1|5 40S ribosomal protein S27-like pseudogene pseudo 631624 Mm.440794 NM_001357991 Gm7072 EG631624 - 17|17 A3.3 predicted gene 7072 protein-coding 105245083 Gm40583 - - 9|9 predicted gene, 40583 ncRNA 109796 Ea1 Ea-1 - - erythrocyte antigen 1 protein-coding 17991 Mm.29867 NM_010885 ENSMUSG00000014294 Ndufa2 AV000592|B8|C1-B8|CI-B8 - 18|18 B2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2 protein-coding 109279854 LOC109279854 Mm29 - - VISTA enhancer mm29 biological-region 102636455 XR_391552 Gm33515 - - 7 C|7 predicted gene, 33515 ncRNA 77582 Mm.397541 NM_029934 ENSMUSG00000035596 Mboat7 5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1 - 7|7 A1 membrane bound O-acyltransferase domain containing 7 protein-coding 111788 Iapls1-29 - - - intracisternal A particle, lymphocyte specific 1-29 other 102640930 XR_384228 Gm36877 - - 15 E1|15 predicted gene, 36877 ncRNA 100034912 Hdlq32 - - 19 36.26 cM HDL QTL 32 unknown 105246068 XR_875897 Gm41418 - - 16 A1|16 predicted gene, 41418 ncRNA 109849 Zfp4 Fnp-2|Zfp-4 - - zinc finger protein 4 protein-coding 68529 1110019B22Rik 0610006I13Rik - 10|10 C2 RIKEN cDNA 1110019B22 gene protein-coding 433229 Gm5514 EG433229 - 19|19 B lactate dehydrogenase B pseudogene pseudo 68098 Mm.159453 NM_026557 ENSMUSG00000029397 Rchy1 ARNIP|CHIMP|Pirh2|Zfp363|Znf363 - 5|5 E2 ring finger and CHY zinc finger domain containing 1 protein-coding 102633970 XR_373649 Gm31667 - - 1 H1|1 predicted gene, 31667 ncRNA 102631512 Gm29832 - - 10|10 predicted gene, 29832 ncRNA 68208 Mm.245981 1700039O17Rik - - 2|2 RIKEN cDNA 1700039O17 gene protein-coding 105244109 XR_866107 Gm39782 - - 2 B|2 predicted gene, 39782 ncRNA 52525 D16Ertd780e - - 16 9.84 cM DNA segment, Chr 16, ERATO Doi 780, expressed unknown 100040213 XM_001474231 Gm2666 Gm16182 - 1 C5|1 predicted gene 2666 protein-coding 628327 Gm6867 EG628327 - 12|12 A1.1 predicted gene 6867 pseudo 100042622 Gm9795 - - 10|10 B4 StAR-related lipid transfer (START) domain containing 6 pseudogene pseudo 100416219 Gm17976 - - 1|1 H2.3 heat shock protein 8 pseudogene pseudo 102638061 Gm34714 - - 7|7 predicted gene, 34714 ncRNA 320614 Mm.173009 NR_102303 ENSMUSG00000097622 A330033J07Rik - - 13|13 A5 RIKEN cDNA A330033J07 gene ncRNA 13388 Mm.4875 NM_007865 ENSMUSG00000014773 Dll1 Delta1 - 17 A2|17 8.95 cM delta like canonical Notch ligand 1 protein-coding 100036279 Pnhdlc4 - - - plasma non-HDL cholesterol 4 unknown 110805 Mm.354634 NM_183298 ENSMUSG00000070990 Foxe1 Titf2 - 4 B1|4 24.68 cM forkhead box E1 protein-coding 218756 Mm.258893 NM_001033270 ENSMUSG00000021733 Slc4a7 E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff - 14|14 A1 solute carrier family 4, sodium bicarbonate cotransporter, member 7 protein-coding 623661 Mm.138000 NM_001037918 ENSMUSG00000037216 Lipt1 EG623661 - 1|1 B lipoyltransferase 1 protein-coding 69898 2010110G14Rik - - 3|3 G3 RIKEN cDNA 2010110G14 gene protein-coding 105247243 XR_881902 Gm42375 Gm44963 - 7 A3|7 predicted gene, 42375 ncRNA 100035417 Elda4 - - - ethanol induced low dose activation 4 unknown 16648 Mm.25548 NM_008466 ENSMUSG00000021929 Kpna3 IPOA4 - 14|14 D1 karyopherin (importin) alpha 3 protein-coding 17948 Mm.89961 NM_010872 ENSMUSG00000078945 Naip2 Birc1b|Naip-rs6 - 13 D1|13 53.01 cM NLR family, apoptosis inhibitory protein 2 protein-coding 230623 Mm.124482 NM_177669 ENSMUSG00000057977 Skint11 A630098G03Rik|Gm569 - 4|4 D1 selection and upkeep of intraepithelial T cells 11 protein-coding 258182 Olfr388-ps1 MOR135-22 - 11|11 B4 olfactory receptor 388, pseudogene 1 pseudo 17761 Mm.20928 NM_008635 ENSMUSG00000019996 Map7 E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste - 10 A3|10 9.75 cM microtubule-associated protein 7 protein-coding 69963 2810432F15Rik - - 5|5 RIKEN cDNA 2810432F15 gene protein-coding 105243138 Mm.247268 Gm15346 - - 8|8 11.42 cM predicted gene 15346 ncRNA 78723 Mm.462991 Pramef12os D530049N12Rik - 4|4 E1 PRAME family member 12, opposite strand protein-coding 100036467 Mpcp5 - - - myeloid progenitor cell proliferation 5 unknown 666253 XM_011245261 Gm8005 EG666253 - 14|14 B predicted gene 8005 protein-coding 105253 AL024213 - - - expressed sequence AL024213 unknown 105243176 Mm.217312 LOC105243176 - - - uncharacterized LOC105243176 ncRNA 105243244 XR_879049 Gm39217 - - 8 C3|8 predicted gene, 39217 ncRNA 209387 Mm.277377 NM_199146 ENSMUSG00000057596 Trim30d AI451617|TRIM30-3|Trim79 - 7|7 E3 tripartite motif-containing 30D protein-coding 492826 Ath16 - - 19 33.03 cM atherosclerosis 16 unknown 433449 Mm.377954 NM_001005225 ENSMUSG00000075119 Olfr1197 MOR225-10P|MOR225-14 - 2|2 E1 olfactory receptor 1197 protein-coding 112244 Aod2 - - 3 18.3 cM autoimmune ovarian dysgenesis 2 unknown 108168331 XR_001782169 Gm46588 - - 17 D|17 predicted gene, 46588 ncRNA 100048981 Mm.484051 Gm14343 - - 2|2 predicted gene 14343 unknown 60983 D18Mit1 - - 18 57.53 cM DNA segment, Chr 18, Massachusetts Institute of Technology 1 unknown 102635765 XR_382497 Gm33019 - - 13 B1|13 predicted gene, 33019 ncRNA 108168092 XR_001780981 Gm46422 - - 13 B3|13 predicted gene, 46422 ncRNA 111890 Iap5rb6 - - - intracisternal A-type particle, U5 region, SINE repeat b-6 other 100039414 Gm11801 - - 4|4 A1 predicted gene 11801 pseudo 102635305 XR_870477 Gm15991 - - 8 B3.2-B3.3|8 33.54 cM predicted gene 15991 ncRNA 111621 Tcra-V13 - - - T cell receptor alpha, variable 13 other 27513 B11I10T - - - DNA segment, B11I10T unknown 109591 Prt4 Prt-4|Smg-1 - - protease 4 protein-coding 100041964 XM_011244834 ENSMUSG00000095360 Gm3594 - - 14 A1|14 predicted gene 3594 protein-coding 12725 Mm.25263 NM_007711 ENSMUSG00000004319 Clcn3 Clc3 - 8 B3.1|8 30.9 cM chloride channel, voltage-sensitive 3 protein-coding 12389 Mm.28278 NM_007616 ENSMUSG00000007655 Cav1 Cav|Cav-1 - 6|6 A2 caveolin 1, caveolae protein protein-coding 330734 Mm.149998 NR_040706 ENSMUSG00000109819 B930018H19Rik B930018H19 - 8|8 A4 RIKEN cDNA B930018H19 gene ncRNA 98068 Mm.28234 C79242 - - - expressed sequence C79242 protein-coding 102635104 XR_382114 Gm32525 - - 13 A3.1|13 predicted gene, 32525 ncRNA 69974 Mm.440293 NR_033447 2810405F15Rik - - 2|2 E5 RIKEN cDNA 2810405F15 gene ncRNA 80876 Mm.379266 NM_030694 ENSMUSG00000060591 Ifitm2 DSPA2c|Ifitm3l|fragilis3|mil-3 - 7|7 F5 interferon induced transmembrane protein 2 protein-coding 359900 DXMgc59 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 59 unknown 112302 Etohila - - 2 47.93 cM ethanol induced locomotor activity unknown 71213 Mm.314688 NM_027724 ENSMUSG00000044566 Cage1 4933427I01Rik|Ctag3 - 13 A3.3|13 cancer antigen 1 protein-coding 108168260 XR_001781743 Gm46533 - - 15 D3|15 predicted gene, 46533 ncRNA 77699 Mm.415100 NR_152816 ENSMUSG00000097691 9030616G12Rik - - 10|10 D3 RIKEN cDNA 9030616G12 gene ncRNA 100034662 Gm1969 - - 5 B1|5 vacuole membrane protein 1 pseudogene pseudo 100035225 Abfw4 - - - abdominal fat weight 4 unknown 102238521 Gm29816 - - 8 A2|8 polymerase (RNA) II (DNA directed) polypeptide K pseudogene pseudo 109279980 LOC109279980 Mm678 - - VISTA enhancer mm678 biological-region 242721 Mm.60400 NM_173427 ENSMUSG00000078234 Klhdc7a B230308G19Rik - 4|4 D3 kelch domain containing 7A protein-coding 19782 NR_001460 ENSMUSG00000088088 Rmrp 1110032O22Rik|Rmrpr - 4|4 A5 RNA component of mitochondrial RNAase P ncRNA 109647 For5 For-5 - - formamidase 5 protein-coding 434018 Mm.487211 NM_001029879 4930533I22Rik - - 6|6 B3 RIKEN cDNA 4930533I22 gene ncRNA 93684 Mm.29812 NM_053102 ENSMUSG00000037072 Selenof 9430015P09Rik|Sep15 - 3|3 H2 selenoprotein F protein-coding 227737 Mm.301646 NM_146119 ENSMUSG00000026796 Fam129b 9130404D14Rik - 2|2 B family with sequence similarity 129, member B protein-coding 67283 Mm.383426 NM_026071 ENSMUSG00000020744 Slc25a19 2900089E13Rik|DNC|MUP1|TPC - 11|11 E2 solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 protein-coding 67038 Mm.154566 NM_025929 ENSMUSG00000063522 2010109I03Rik Ly6m - 15|15 D3 RIKEN cDNA 2010109I03 gene protein-coding 384281 Mm.229308 NM_029645 ENSMUSG00000029536 Gatc 2010003O18Rik - 5|5 F glutamyl-tRNA(Gln) amidotransferase, subunit C protein-coding 280047 Gm5075 EG280047 - 3|3 F2.3 predicted gene 5075 pseudo 100042561 Gm10177 - - 9|9 A4 predicted gene 10177 pseudo 100038746 Mm.456686 NR_045963 ENSMUSG00000066057 Gm1976 100038868 - 17|17 E5 predicted gene 1976 ncRNA 105242443 XR_869243 Gm38708 Gm44246 - 6 D1|6 predicted gene, 38708 ncRNA 100043126 Gm4245 - - 2 H4|2 predicted gene 4245 protein-coding 111888 Iap5rb2 - - - intracisternal A-type particle, U5 region, SINE repeat b-2 other 11785 Mm.38469 NM_009685 ENSMUSG00000037032 Apbb1 Fe65|Rir - 7 E3|7 55.9 cM amyloid beta (A4) precursor protein-binding, family B, member 1 protein-coding 68045 Mm.21932 NM_026528 ENSMUSG00000021807 Rtraf 2700060E02Rik - 14|14 A3 RNA transcription, translation and transport factor protein-coding 244853 Mm.325522 NM_172921 ENSMUSG00000044229 Nxpe4 C130036J11|D930028F11Rik|Fam55d - 9|9 A5.3 neurexophilin and PC-esterase domain family, member 4 protein-coding 234836 Mm.222808 NM_145834 ENSMUSG00000046108 Il17c IL-17C - 8|8 E1 interleukin 17C protein-coding 102638509 XR_389790 Gm35055 - - 5 B1|5 predicted gene, 35055 ncRNA 11827 Mm.20206 NM_009699 ENSMUSG00000023013 Aqp2 AQP-CD|WCH-CD|cph|jpk - 15 F1|15 56.13 cM aquaporin 2 protein-coding 102634463 Gm32040 - - 6|6 tRNA methyltransferase 112 homolog pseudo 75029 Mm.159402 NM_152821 ENSMUSG00000049184 Purg 4930486B15Rik - 8|8 A3 purine-rich element binding protein G protein-coding 102633088 XR_382568 Gm30999 - - 13 B3|13 predicted gene, 30999 ncRNA 68744 Mm.352945 NM_153194 ENSMUSG00000046897 Zfp740 1110034O07Rik|AW548228|Znf740 - 15|15 F2-F3 zinc finger protein 740 protein-coding 497652 Mm.12964 NM_001012638 ENSMUSG00000038000 Acd - - 8 D3|8 53.04 cM adrenocortical dysplasia protein-coding 14123 Mm.323505 NM_010183 ENSMUSG00000042423 Fbrs Fbs|Fbs1 - 7|7 F3 fibrosin protein-coding 102637251 XR_386712 Gm34116 - - 19 C3|19 predicted gene, 34116 ncRNA 62479 D10Mit102 - - 10 68.86 cM DNA segment, Chr 10, Massachusetts Institute of Technology 102 unknown 102633926 XR_377657 Gm31631 - - 6 B3|6 predicted gene, 31631 ncRNA 28286 D10Jhu47 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 47 unknown 22375 Mm.38433 NM_011710 ENSMUSG00000021266 Wars TrpRS|WRS - 12|12 F1 tryptophanyl-tRNA synthetase protein-coding 111629 Tcra-V17 - - - T cell receptor alpha, variable 17 other 21844 Mm.310902 NM_009384 ENSMUSG00000002489 Tiam1 AI847750|D16Ium10|D16Ium10e - 16 C3.3|16 51.5 cM T cell lymphoma invasion and metastasis 1 protein-coding 102640832 Mm.363202 XR_001779778 Gm26947 - - 10 B4|10 predicted gene, 26947 ncRNA 13046 Mm.29495 NM_017368 ENSMUSG00000005506 Celf1 1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50 - 2 E1|2 50.44 cM CUGBP, Elav-like family member 1 protein-coding 17883 Mm.340090 NM_001099635 ENSMUSG00000020908 Myh3 MyHC-emb|Myhs-e|Myhse - 11 B3|11 40.59 cM myosin, heavy polypeptide 3, skeletal muscle, embryonic protein-coding 100042118 Gm3678 - - 12|12 A1.1 predicted gene 3678 pseudo 28075 Mm.474453 NM_134095 ENSMUSG00000022472 Desi1 AI427858|AI850401|D15Wsu75e|DeSI-1|Fam152b|Pppde2 - 15 E1|15 38.34 cM desumoylating isopeptidase 1 protein-coding 218963 Mm.282093 NR_002875 Gm1821 - - 14|14 C1 ubiquitin pseudogene pseudo 100041652 Gm3454 - - 15|15 D3 predicted gene 3454 pseudo 77963 Mm.49994 NM_030014 ENSMUSG00000028572 Hook1 A930033L17Rik|azh - 4 C5|4 44.17 cM hook microtubule tethering protein 1 protein-coding 102638244 Gm34853 - - 8|8 predicted gene, 34853 ncRNA 278087 Mm.491033 NM_001083629 Gm5071 EG278087 - X|X C2 predicted pseudogene 5071 protein-coding 116608 D7Tem10 - - - DNA segment, Chr 7, Tempel 10 unknown 102633813 Gm38454 - - 6|6 predicted gene, 38454 ncRNA 102637843 Gm34550 - - Y|Y predicted gene, 34550 ncRNA 21945 Mm.270139 NM_011615 ENSMUSG00000013973 Dedd CASP8IP1|DEFT|Dedpro1|FLDED1|KE05 - 1 H3|1 79.34 cM death effector domain-containing protein-coding 359960 DXMgc97 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 97 unknown 360052 D17Jcs66 - - - DNA segment, Chr 17, John C. Schimenti 66 unknown 20223 sar - - - sarcosinemia autosomal recessive unknown 100416250 Gm18003 - - 15|15 B2 WD repeat domain 75 pseudogene pseudo 101056303 LOC101056303 - - - protein max-like pseudo 108169038 XR_001784839 Gm46909 - - 5 B1|5 predicted gene, 46909 ncRNA 21037 T(10;12)38Ad T38Ad - - reciprocal translocation, Chr 10 and 12, Adler 38 other 74412 Mm.275121 NM_028923 ENSMUSG00000019715 Gle1 4933405K21Rik|AA553313|Gle1l - 2|2 B GLE1 RNA export mediator (yeast) protein-coding 18002 Mm.296566 NM_008683 ENSMUSG00000010376 Nedd8 Rub1 - 14 C3|14 28.19 cM neural precursor cell expressed, developmentally down-regulated gene 8 protein-coding 105243273 XR_879147 Gm39238 - - 8 D3|8 predicted gene, 39238 ncRNA 104447 AL024152 - - - expressed sequence AL024152 unknown 105245964 XR_875379 Gm41335 - - 15 D1|15 predicted gene, 41335 ncRNA 108168445 Gm46677 - - X C2|X predicted gene, 46677 pseudo 100124568 Vmn2r-ps78 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 78 pseudo 100526561 NR_130341 ENSMUSG00000095269 Mir466b-8 mmu-mir-466b-8 - 2 A1|2 8.22 cM microRNA 466b-8 ncRNA 102638434 Mm.364438 NR_155353 Gm16537 - - 15 F1|15 56.13 cM predicted gene 16537 ncRNA 218503 Mm.23928 NM_172591 ENSMUSG00000041685 Fcho2 5832424M12Rik|AA387320 - 13|13 D1 FCH domain only 2 protein-coding 61851 D1Mit399 - - 1 70.29 cM DNA segment, Chr 1, Massachusetts Institute of Technology 399 unknown 73560 Mm.417841 XR_001784782 1700108N06Rik Gm38694|Gm43642 - 5|5 A1 RIKEN cDNA 1700108N06 gene ncRNA 105246590 XR_877901 Gm41860 - - 19 D2|19 predicted gene, 41860 ncRNA 333669 Mm.31077 NM_198635 ENSMUSG00000033255 Gm5134 EG333669 - 10 C1|10 predicted gene 5134 protein-coding 103136 Mm.18834 NM_133993 ENSMUSG00000001785 Pwp1 2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690 - 10|10 C1 PWP1 homolog, endonuclein protein-coding 94346 Mm.29739 NM_144805 ENSMUSG00000059900 Tmem40 9030407H20Rik|AV091463|W64236 - 6|6 E3 transmembrane protein 40 protein-coding 76500 Mm.276336 NM_029634 ENSMUSG00000032599 Ip6k2 1500005N04Rik|AW050208|Ihpk2 - 9|9 F2 inositol hexaphosphate kinase 2 protein-coding 16080 Igk-V - - 6 B2.1|6 immunoglobulin kappa chain complex variable region other 100504387 Gm13868 - - 2|2 54.13 cM 60S ribosomal protein L37-like pseudo 258594 Mm.377584 NM_146601 ENSMUSG00000045581 Olfr710 MOR260-3 - 7|7 E3 olfactory receptor 710 protein-coding 77904 9230113A04Rik - - X|X RIKEN cDNA 9230113A04 gene protein-coding 19182 Mm.289832 NM_008948 ENSMUSG00000002102 Psmc3 TBP-1 - 2 E1|2 50.44 cM proteasome (prosome, macropain) 26S subunit, ATPase 3 protein-coding 102467648 n-TLaag1 n-Tl1 - - nuclear encoded tRNA leucine 1 (anticodon AAG) tRNA 100418462 Gm19227 - - 15|15 A1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 pseudogene pseudo 102634741 Gm15341 - - 16|16 56.82 cM predicted gene 15341 ncRNA 71148 Mm.288721 NM_027696 ENSMUSG00000028522 Mier1 4933425I22Rik|5830411K19Rik|er1 - 4|4 C6 MEIR1 treanscription regulator protein-coding 100418299 Gm19127 - - 7|7 E3 origin recognition complex, subunit 1-like pseudogene pseudo 666656 Gm8217 EG666656 - 1|1 E2.3 ribosomal protein L23a pseudogene pseudo 76567 Mm.396169 1700012E03Rik - - 1|1 RIKEN cDNA 1700012E03 gene protein-coding 12367 Mm.34405 NM_009810 ENSMUSG00000031628 Casp3 A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy - 8 B1.1|8 26.39 cM caspase 3 protein-coding 61527 D8Mit185 - - 8 53.81 cM DNA segment, Chr 8, Massachusetts Institute of Technology 185 unknown 105244583 XR_867734 Gm40175 - - 3 H2|3 predicted gene, 40175 ncRNA 13861 Mm.1315 NM_007946 ENSMUSG00000052234 Epx EPO - 11 C|11 52.25 cM eosinophil peroxidase protein-coding 15930 Mm.392 NM_008324 ENSMUSG00000031551 Ido1 Ido|Indo - 8|8 A2 indoleamine 2,3-dioxygenase 1 protein-coding 629141 Mm.229259 NR_033461 ENSMUSG00000056509 Gm9999 - - 7 B3|7 predicted gene 9999 ncRNA 106824 D230046O15Rik AW742400 - - RIKEN cDNA D230046O15 gene protein-coding 56028 D5Buc53 - - - DNA segment, Chr 5, Bucan 53 unknown 27506 573K1T - - - DNA segment, 573K1T unknown 12328 Mm.2313 NM_007596 ENSMUSG00000021501 Caml AI385748|Camlg - 13 B1|13 30.06 cM calcium modulating ligand protein-coding 102466808 NR_106065 ENSMUSG00000098416 Mir7117 Gm27729|mmu-mir-7117 - 15|15 B1 microRNA 7117 ncRNA 258330 Mm.330392 NM_146263 ENSMUSG00000082980 Olfr1274-ps GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274 - 2|2 E1 olfactory receptor 1274, pseudogene protein-coding 61170 D16Mit33 - - 16 5.37 cM DNA segment, Chr 16, Massachusetts Institute of Technology 33 unknown 18942 Pnlf4 - - - prenatal lethal function 4 unknown 432939 Mm.146555 NM_001013791 Gm5468 100040583|EG432939 - 15 B1|15 predicted gene 5468 ncRNA 97184 C87017 - - - expressed sequence C87017 unknown 17179 Mm.2918 NM_010768 ENSMUSG00000004933 Matk CHK|HYL|Ntk|p56ntk - 10 39.72 cM|10 C1 megakaryocyte-associated tyrosine kinase protein-coding 668177 Gm9022 EG668177 - 14 C3|14 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102632720 XR_383631 Gm30716 - - 14 D3|14 predicted gene, 30716 ncRNA 100036464 Etax4 - - - ethanol induced ataxia 4 unknown 216766 Mm.275349 NM_172558 ENSMUSG00000037275 Gemin5 AA407055|AA407208|AI451603|BB194447|C330013N08 - 11|11 B1.3 gem nuclear organelle associated protein 5 protein-coding 66491 Mm.380115 NM_025593 ENSMUSG00000038489 Polr2l 2510029B14Rik - 7|7 F5 polymerase (RNA) II (DNA directed) polypeptide L protein-coding 242037 Mm.291091 NM_001033349 ENSMUSG00000074591 Ankub1 Gm410 - 3|3 D ankrin repeat and ubiquitin domain containing 1 protein-coding 102639848 Mm.424479 NR_153188 Gm12532 - - 3 B|3 18.34 cM predicted gene 12532 ncRNA 78536 XR_877355 C030004G16Rik - - 18|18 B3 RIKEN cDNA C030004G16 gene ncRNA 606511 Gm6048 EG606511|Map1lc3-ps8 - 16|16 A3 microtubule-associated protein 1 light chain 3 pseudogene copy 8 pseudo 75848 4930566K23Rik - - 4|4 RIKEN cDNA 4930566K23 gene protein-coding 21297 T(X;16)16H T16H - - reciprocal translocation, Chr X and 16, Harwell 16 other 100502829 Mm.39944 NR_040427 ENSMUSG00000053214 Gm9899 - - 5 B1|5 16.67 cM predicted gene 9899 ncRNA 108092 Tcra-V13.2 - - - T cell receptor alpha variable region family 13 subfamily 2 other 102634915 Gm12268 - - 11 B2|11 37.81 cM predicted gene 12268 pseudo 665103 Gm7493 EG665103 - 1|1 A2 predicted gene 7493 pseudo 66244 Mm.46705 NM_025441 ENSMUSG00000020982 Nemf 1500011I12Rik|4933405E14Rik|Sdccag1 - 12|12 C2 nuclear export mediator factor protein-coding 105246613 XR_877974 Gm41880 - - 19 D3|19 predicted gene, 41880 ncRNA 62111 D12Mit66 - - 12 23.16 cM DNA segment, Chr 12, Massachusetts Institute of Technology 66 unknown 68709 Mm.334584 NM_026818 ENSMUSG00000044006 Cilp2 1110031K21Rik|AA407300|CLIP-2 - 8|8 B3.3 cartilage intermediate layer protein 2 protein-coding 102635600 Gm32891 - - 9|9 predicted gene, 32891 ncRNA 102467400 n-TVaac4 n-Tv4 - 13 A3.1|13 nuclear encoded tRNA valine 4 (anticodon AAC) tRNA 404368 Olfr274-ps1 GA_x5J8B7W4TKW-7041228-7041658 - 4|4 B2 olfactory receptor 274, pseudogene 1 pseudo 111009 Marcksl1-ps2 Mlp-rs2|Mrp-rs2 - 17 E5|17 58.75 cM MARCKS-like 1, pseudogene 2 pseudo 110099 Rasl2-7 - - - RAS-like, family 2, locus 7 protein-coding 109145 Mm.27945 NM_024240 ENSMUSG00000031546 Gins4 2810037C03Rik|4933405K01Rik|Sld5 - 8|8 A2 GINS complex subunit 4 (Sld5 homolog) protein-coding 102638654 XR_383954 Gm35167 - - 15 B3.1|15 predicted gene, 35167 ncRNA 100043681 Gm14176 - - 2 H1|2 ubiquitin-conjugating enzyme E2I pseudogene pseudo 105242480 LOC105242480 - - - arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 protein-coding 102637557 XR_377937 Gm34335 - - 6 D3|6 predicted gene, 34335 ncRNA 268490 Mm.259079 NM_172947 ENSMUSG00000020922 Lsm12 1110032E16Rik|1110059P07|2600001B17Rik - 11|11 D LSM12 homolog protein-coding 217333 Mm.347770 NM_172570 ENSMUSG00000020773 Trim47 2210023F24Rik - 11|11 E2 tripartite motif-containing 47 protein-coding 102639635 XR_382172 Gm35899 - - 13 A3.2|13 predicted gene, 35899 ncRNA 24071 Mm.279603 NM_025292 ENSMUSG00000090935 Synj2bp AA409442|ARIP2|ActRIP4|D12Wsu118e|OMP25 - 12 D1|12 37.73 cM synaptojanin 2 binding protein protein-coding 259098 Mm.377840 NM_147094 ENSMUSG00000073949 Olfr606 MOR17-2 - 7|7 E3 olfactory receptor 606 protein-coding 105246146 XR_876193 Gm41482 - - 16 C3.3|16 predicted gene, 41482 ncRNA 102633724 Mm.388904 XR_867983 1700047F07Rik - - 4|4 C7 RIKEN cDNA 1700047F07 gene ncRNA 105245836 XR_874883 Gm41225 - - 14 E1|14 predicted gene, 41225 ncRNA 111584 Pmv17 Pmv-17|Pol-5|Xmmv-55|Xmmv-72|Xmmv-75|Xp-14 - - polytropic murine leukemia virus 17 other 108397 Srev10 Srev-10 - - SWR/J-RF/J ecotropic provirus 10 other 100035979 Hemq6 - - - hematocrit QTL 6 unknown 97848 Mm.272188 NM_148942 ENSMUSG00000052180 Serpinb6c C76171|C76174|SPI3C|SPIC|ovalbumin - 13 A3.3|13 13.99 cM serine (or cysteine) peptidase inhibitor, clade B, member 6c protein-coding 100503908 XR_386850 Gm19956 - - 19 D3|19 56.28 cM predicted gene, 19956 ncRNA 105246413 XR_877331 Gm41703 - - 18 B3|18 predicted gene, 41703 ncRNA 102635537 XR_375288 Gm32845 - - 2 H3|2 predicted gene, 32845 ncRNA 61597 D9Mit276 - - 9 54.88 cM DNA segment, Chr 9, Massachusetts Institute of Technology 276 unknown 15903 Mm.110 NM_008321 ENSMUSG00000007872 Id3 Hlh462|Idb3|bHLHb25 - 4 D3|4 68.34 cM inhibitor of DNA binding 3 protein-coding 62685 D16Mit120 - - 16 37.61 cM DNA segment, Chr 16, Massachusetts Institute of Technology 120 unknown 11655 Mm.290578 NM_020559 ENSMUSG00000032786 Alas1 ALAS|ALAS-N|Alas-1|Alas-h - 9|9 F1 aminolevulinic acid synthase 1 protein-coding 76937 Mm.487240 NR_015522 ENSMUSG00000097709 2810429I04Rik AI256682 - 13|13 A1 RIKEN cDNA 2810429I04 gene ncRNA 493014 Si5lq3 - - 9 27.07 cM serum IGFBP-5 level QTL 3 unknown 76448 Mm.359982 NM_175242 ENSMUSG00000034595 Ppp1r18 2310014H01Rik|AA407849|AI450394 - 17|17 B1 protein phosphatase 1, regulatory subunit 18 protein-coding 258325 Mm.484339 NM_146328 ENSMUSG00000090894 Olfr110 MOR249-2 - 17|17 B1 olfactory receptor 110 protein-coding 70246 3300002P09Rik - - 10|10 RIKEN cDNA 3300002P09 gene protein-coding 21066 T(11;16A)53Dn T(11;16)53Dn|T53Dn - - reciprocal translocation, Chr 11; and Chr 16, cytogenetic band A, Davisson 53 other 112339 Carfhg2 Carf2|Q9Ucd1-fp - - carcass fat in high growth mice 2 unknown 75226 Mm.399298 4930529F21Rik - - - RIKEN cDNA 4930529F21 gene protein-coding 52002 D6Ertd15e - - 6 12.52 cM DNA segment, Chr 6, ERATO Doi 15, expressed unknown 100846989 Gm11366 - - 13 A3.2|13 13.15 cM non-POU-domain-containing, octamer binding protein pseudogene pseudo 102344 9430047G12Rik AW742331|AW743025 - - RIKEN cDNA 9430047G12 gene protein-coding 52885 D12Bwg1319e - - - DNA segment, Chr 12, Brigham & Women's Genetics 1319 expressed unknown 100042091 Rpl28-ps2 Gm3661 - 3 E3|3 ribosomal protein L28, pseudogene 2 pseudo 100418475 Gm19233 - - 10|10 D1 methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase pseudogene pseudo 621386 Gm13809 - - 2|2 E1 lactate dehydrogenase A pseudogene pseudo 100312537 Vmn1r-ps108 Gm11304 - 13 A3.1|13 8.79 cM vomeronasal 1 receptor, pseudogene 108 pseudo 100462 AW743448 - - - expressed sequence AW743448 unknown 62168 D14Mit66 - - 14 31.62 cM DNA segment, Chr 14, Massachusetts Institute of Technology 66 unknown 102635650 XM_006516450 Gm32936 - - 12 C1|12 predicted gene, 32936 protein-coding 100502654 Gm11474 - - 2 H3|2 87.32 cM cytochrome b-c1 complex subunit 6, mitochondrial-like pseudo 114750 Pbd1 Cti2 - 11 54.34 cM peak bone density 1 unknown 53415 Mm.20801 NM_016865 ENSMUSG00000039745 Htatip2 AW111545|Cc3|Tip30 - 7|7 B4 HIV-1 Tat interactive protein 2 protein-coding 219072 Mm.202152 NM_145462 ENSMUSG00000022177 Haus4 9430093H08Rik|AU016300|D14Ertd500e - 14 C2|14 27.83 cM HAUS augmin-like complex, subunit 4 protein-coding 112403 Mm.275309 NM_033613 ENSMUSG00000040482 Dxo Dom3z|NG6 - 17|17 B1 decapping exoribonuclease protein-coding 19259 Mm.4654 NM_013643 ENSMUSG00000030854 Ptpn5 Step - 7 B3|7 30.7 cM protein tyrosine phosphatase, non-receptor type 5 protein-coding 108169047 XR_001784869 Gm15477 - - 5 C3.1|5 36.32 cM predicted gene 15477 ncRNA 108167970 Gm46327 - - 12 B3|12 NHP2-like protein 1 pseudo 77018 Mm.91728 NM_029838 ENSMUSG00000058897 Col25a1 2700062B08Rik|CLAC-P - 3|3 G3 collagen, type XXV, alpha 1 protein-coding 100417409 Gm18596 - - 10|10 C1 keratin associated protein 4-16 pseudogene pseudo 105244518 XR_867534 Gm40112 - - 3 F2.2|3 predicted gene, 40112 ncRNA 100036305 Bntq4 - - - bone traits QTL 4 unknown 100035173 Emo4 - - - emotionality 4 unknown 100113365 Mm.468446 Nlgn4l NL-4|NL4|Nlgn4|Nlgn4x - - neuroligin 4-like protein-coding 27464 3T - - - DNA segment, 3T unknown 100416432 Gm14784 - - X|X C2 PR domain containing 4 pseudogene pseudo 18742 Mm.6255 NM_008852 ENSMUSG00000025229 Pitx3 Ptx3|ak - 19 C3|19 38.75 cM paired-like homeodomain transcription factor 3 protein-coding 57434 Mm.143767 NM_020570 ENSMUSG00000028933 Xrcc2 4921524O04Rik|8030409M04Rik|RAD51|RecA - 5|5 B1 X-ray repair complementing defective repair in Chinese hamster cells 2 protein-coding 100038631 Mm.404405 Gm9888 - - - predicted gene 9888 unknown 102639888 Mm.436742 XR_386532 ENSMUSG00000091558 LOC102639888 - - 19 A uncharacterized LOC102639888 ncRNA 102465223 NR_105839 ENSMUSG00000098522 Mir6412 Gm27364|mmu-mir-6412 - 10|10 D2 microRNA 6412 ncRNA 404345 Olfr188-ps1 - - 16|16 C1.3 olfactory receptor 188, pseudogene 1 pseudo 259148 Mm.339495 NM_001011531 ENSMUSG00000064252 Olfr329-ps MOR275-6P|Olfr329 - 11|11 B1.3 olfactory receptor 329, pseudogene protein-coding 497107 Ear-ps3 - - 14|14 C1 eosinophil-associated, ribonuclease A family, pseudogene 3 pseudo 100534301 LOC100534301 - - 7|7 B3 vomeronasal 2, receptor 93 pseudogene pseudo 100504395 Gm20204 - - 8|8 63.8 cM predicted gene, 20204 ncRNA 102643128 XR_874613 Gm38660 - - 14 C1|14 predicted gene, 38660 ncRNA 231932 Mm.30479 NM_146167 ENSMUSG00000043931 Gimap7 IAN7|Ian3 - 6|6 B2.3 GTPase, IMAP family member 7 protein-coding 102631812 XR_383232 Gm30054 - - 14 A3|14 predicted gene, 30054 ncRNA 100503061 Gm19532 - - 13|13 34.53 cM zinc finger protein 41-like pseudo 100038615 D230041D01Rik - - - RIKEN cDNA D230041D01 gene unknown 667550 Igkv10-94 AJ2|EG667550|Gm8698 - 6|6 C1 immunoglobulin kappa variable 10-94 other 22327 Mm.8294 NM_011692 ENSMUSG00000031197 Vbp1 VBP-1 - X A7.3|X 38.25 cM von Hippel-Lindau binding protein 1 protein-coding 100302301 Gm17809 - - 16|16 C1.1 conserved helix-loop-helix ubiquitous kinase pseudogene pseudo 672125 Mm.489571 NM_001205282 ENSMUSG00000098505 Gm14496 - - 2 H4|2 predicted gene 14496 protein-coding 77337 Mm.27085 NM_029901 ENSMUSG00000021207 Akr1c21 9430025F20Rik|AI315367 - 13|13 A1 aldo-keto reductase family 1, member C21 protein-coding 105246019 Gm41382 - - 15|15 predicted gene, 41382 ncRNA 637227 Mm.305097 Igkv6-23 19-23|EG637227|Gm7202|IgK - 6|6 C1 immunoglobulin kappa variable 6-23 other 108446 Xmmv78 Xmmv-78 - - xenotropic-MCF leukemia virus 78 other 105246461 XR_877470 Gm41747 - - 18 E1|18 predicted gene, 41747 ncRNA 102632312 XR_385745 Gm30420 - - 17 E1.3|17 predicted gene, 30420 ncRNA 103580 AA522019 - - - expressed sequence AA522019 unknown 69116 Mm.271956 NM_001160319 ENSMUSG00000066036 Ubr4 1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600 - 4|4 D3 ubiquitin protein ligase E3 component n-recognin 4 protein-coding 100035362 Ccmp1 - - - cerebellar cAMP 1 unknown 102639540 XR_384327 Gm35831 - - 15 E3|15 predicted gene, 35831 ncRNA 105246775 Gm42014 - - 5|5 predicted gene, 42014 ncRNA 228491 Mm.132523 NM_175466 ENSMUSG00000040321 Zfp770 6430601A21Rik|Znf770 - 2|2 E4 zinc finger protein 770 protein-coding 109280141 LOC109280141 Mm1329 - - VISTA enhancer mm1329 biological-region 108168857 XR_001783789 Gm46796 - - 3 A1|3 predicted gene, 46796 ncRNA 23988 Mm.7906 NM_023371 ENSMUSG00000032171 Pin1 0610025L01Rik|D9Bwg1161e - 9 A3|9 7.6 cM protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1 protein-coding 68115 Mm.275428 NM_001081181 ENSMUSG00000025971 Maip1 9430016H08Rik|AA409999|C78988 - 1|1 C1.3 matrix AAA peptidase interacting protein 1 protein-coding 100035311 Myci2 Myo-2 - 14 37.61 cM myocardial infarction 2 unknown 381738 Mm.389604 NM_001033460 ENSMUSG00000073102 Drc1 Ccdc164|Gm1060|b2b1654Clo - 5|5 B1 dynein regulatory complex subunit 1 protein-coding 435321 Ighv12-3 EG435321|Gm5658 - 12|12 F1 immunoglobulin heavy variable V12-3 other 79206 D11Bcm22 258L5-T7 - - DNA segment, Chr 11, Baylor College of Medicine, Mouse Center 22 unknown 102635050 XR_378708 Gm32485 - - 8 A1.1|8 predicted gene, 32485 ncRNA 381002 Mm.441967 NR_131059 ENSMUSG00000115240 Gm5144 - - 15 A1|15 predicted gene 5144 ncRNA 61104 D1Mit505 - - 1 70.06 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 505 unknown 102642832 XR_873373 LOC102642832 - - 13 A5 uncharacterized LOC102642832 ncRNA 100417195 Gm18441 - - 12|12 F2 translocated promoter region pseudogene pseudo 100038643 Mm.24028 Gm10835 - - - predicted gene 10835 unknown 76623 Mm.460423 1700093C20Rik - - 8|8 RIKEN cDNA 1700093C20 gene protein-coding 109952 Ht16 - - - T cell clone T16 antigen protein-coding 102631968 XR_001779708 Gm30164 - - 10 A1|10 predicted gene, 30164 ncRNA 213272 Mm.255732 NM_153519 ENSMUSG00000050612 Txndc2 AU021712|Sptrx-1|Sptrx1|Trx4 - 17|17 E1.1 thioredoxin domain containing 2 (spermatozoa) protein-coding 102637067 XR_384922 Gm33971 - - 16 C1.3|16 predicted gene, 33971 ncRNA 106014251 Mm.305994 NR_132314 Gm28043 Rnf8-cmtr1 - 17 A3.3|17 predicted gene, 28043 ncRNA 669301 Gm9449 - - 7 E3|7 suppressor of cytokine signaling 6 pseudogene pseudo 259083 Mm.377828 NM_147079 ENSMUSG00000073979 Olfr547 MOR31-4 - 7|7 E3 olfactory receptor 547 protein-coding 102634096 Mm.396640 XR_375262 ENSMUSG00000085596 Gm11476 - - 2 H3|2 87.35 cM predicted gene 11476 ncRNA 723925 NR_029658 ENSMUSG00000065514 Mir106b Mirn106b|mir-106b - 5|5 G2 microRNA 106b ncRNA 434728 Mm.291786 NM_001277184 Fthl17-ps1 EG434728|Fthl17L4|Gm14499 - X A1.1|X ferritin, heavy polypeptide-like 17, pseudogene 1 protein-coding 218476 Mm.483490 NM_001166065 ENSMUSG00000091387 Gcnt4 C2gnt3|Gm279|Gm73 - 13|13 D1 glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase) protein-coding 100561 Mm.28506 NM_133895 ENSMUSG00000029416 Slc15a4 AA987064|AW742963|C130069N12Rik|PHT1|PTR4 - 5|5 G1.2 solute carrier family 15, member 4 protein-coding 53860 Mm.38450 NM_017380 ENSMUSG00000059248 Sept9 MSF1|Msf|PNUTL4|Sint1 - 11 E2|11 82.61 cM septin 9 protein-coding 100036355 Orgwt8 - - - organ weight 8 unknown 93838 Mm.140332 NM_033606 ENSMUSG00000009145 Dqx1 2310066E11Rik - 6 C3|6 35.94 cM DEAQ RNA-dependent ATPase protein-coding 75656 Mm.174788 NM_029375 ENSMUSG00000027409 1700020A23Rik - - 2|2 F1 RIKEN cDNA 1700020A23 gene protein-coding 102638293 XR_391200 Gm34891 - - 7 A3|7 predicted gene, 34891 ncRNA 74542 Mm.297789 9030625N01Rik - - 19|19 A RIKEN cDNA 9030625N01 gene unknown 52208 D9Ertd292e - - 9 59.07 cM DNA segment, Chr 9, ERATO Doi 292, expressed unknown 105058 BB044704 - - - expressed sequence BB044704 unknown 67568 Mm.332336 NM_026242 ENSMUSG00000055302 Mrfap1 9130413I22Rik|AL022827|Pam14 - 5|5 B3 Morf4 family associated protein 1 protein-coding 62077 D10Mit62 - - 10 35.0 cM DNA segment, Chr 10, Massachusetts Institute of Technology 62 unknown 71319 Mm.123774 NR_040558 ENSMUSG00000085184 4933439K11Rik - - 1|1 H3 RIKEN cDNA 4933439K11 gene ncRNA 102631586 Mm.475016 XR_375430 Gm29886 - - 2 H4|2 predicted gene, 29886 ncRNA 71639 Mm.416920 XR_390362 4930430E12Rik - - 4|4 A1 RIKEN cDNA 4930430E12 gene unknown 100035580 Bwnd4wk4 - - - body weight, NMR1 x DBA, 4 week, QTL 4 unknown 97550 Mm.441999 C130081A10Rik C85316 - - RIKEN cDNA C130081A10 gene protein-coding 226610 Mm.389217 NM_175461 ENSMUSG00000060568 Fam78b C030014K22Rik|C030020L09Rik - 1|1 H2.3 family with sequence similarity 78, member B protein-coding 100035915 Mfi7q1 - - - M16 feed intake at 7 weeks QTL 1 unknown 16618 Mm.439663 NM_010644 ENSMUSG00000053719 Klk1b26 Egfbp2|Klk26|PRECE-2|mGK-26|mGK26 - 7 B3|7 28.5 cM kallikrein 1-related petidase b26 protein-coding 102633546 Gm31345 - - 5|5 predicted gene, 31345 pseudo 18045 Mm.245998 NM_010914 ENSMUSG00000020248 Nfyb AA985999|Cbf-A - 10 C1|10 40.25 cM nuclear transcription factor-Y beta protein-coding 26441 Mm.30270 NM_011966 ENSMUSG00000032301 Psma4 C9 - 9|9 B proteasome (prosome, macropain) subunit, alpha type 4 protein-coding 102467629 n-TDgtc8 n-Td8 - 10 C2|10 nuclear encoded tRNA aspartic acid 8 (anticodon GTC) tRNA 668964 Mm.457962 NM_001085554 ENSMUSG00000094273 Btbd35f17 Gm10922 - X|X A1.1 BTB domain containing 35, family member 17 protein-coding 208424 Gm412 - - 3|3 E1 pyrimidinergic receptor P2Y, G-protein coupled, 4 pseudogene pseudo 21226 T(5;8)3Rk T3Rk - - reciprocal translocation, Chr 5 and 8, Roderick 3 other 102631683 XR_389707 Gm29959 - - 3 B|3 predicted gene, 29959 ncRNA 100036375 Mpcp1 - - - myeloid progenitor cell proliferation 1 unknown 667611 Gm8725 EG667611 - 13|13 A1 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 106125 AA537038 - - - expressed sequence AA537038 unknown 73865 Mm.66946 NR_038182 ENSMUSG00000106880 4930425K10Rik - - 5|5 C3.1 RIKEN cDNA 4930425K10 gene ncRNA 108168243 XR_001781700 Gm46518 - - 15 D3|15 predicted gene, 46518 ncRNA 223658 Mm.123240 NM_175457 ENSMUSG00000022558 Mroh1 D330001F17Rik|Heatr7a - 15|15 D3 maestro heat-like repeat family member 1 protein-coding 12979 Csf1r-ps 100043091|Csfgr-ps|Gm4223 - 19|19 D3 colony stimulating factor 1 receptor (granulocyte), pseudogene pseudo 105244008 Gm39702 - - 1|1 predicted gene, 39702 ncRNA 433658 Mm.386945 XR_001784070 ENSMUSG00000089737 Gm15688 EG433658 - 3|3 H1 predicted gene 15688 ncRNA 105245194 XR_871796 Gm40680 - - 10 B5.1|10 predicted gene, 40680 ncRNA 108166 Sdc-rs3 Synd-rs3 - - syndecan, related sequence 3 pseudo 676200 Cyp2d38-ps Gm9667 - 15 E1|15 cytochrome P450, family 2, subfamily d, member 38, pseudogene pseudo 102631890 XR_388628 Gm30110 - - 11 B1.3|11 predicted gene, 30110 ncRNA 320332 Mm.246720 NM_175652 ENSMUSG00000096010 Hist4h4 B130044J01Rik - 6|6 G1 histone cluster 4, H4 protein-coding 70160 Mm.41453 NM_027338 ENSMUSG00000031479 Vps36 1700010A24Rik|2210415M20Rik|2810408E15Rik|Eap45 - 8|8 A2 vacuolar protein sorting 36 protein-coding 100043028 Gm4178 - - 10|10 D3 coenzyme Q4 homolog pseudogene pseudo 12958 Mm.86656 NM_021541 ENSMUSG00000006546 Cryba2 E130107M19Rik - 1 C4|1 38.54 cM crystallin, beta A2 protein-coding 105244754 LOC105244754 - - 5 C3.1 hematological and neurological expressed 1 protein pseudogene pseudo 52550 D15Ertd271e - - 18 23.77 cM DNA segment, Chr 15, ERATO Doi 271, expressed unknown 105242560 Gm38738 - - 5|5 predicted gene, 38738 ncRNA 668380 Gm9139 EG668380 - 12|12 A1.1 regulator of chromosome condensation 2 pseudogene pseudo 57746 Mm.85253 NM_021308 ENSMUSG00000033644 Piwil2 Piwil1l|mili - 14|14 D2 piwi-like RNA-mediated gene silencing 2 protein-coding 735252 NR_029795 ENSMUSG00000065565 Mir181a-1 Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213 - 1 E4|1 microRNA 181a-1 ncRNA 105244575 Gm40168 - - 3|3 predicted gene, 40168 ncRNA 97149 C78893 - - - expressed sequence C78893 protein-coding 73571 Mm.105263 NR_027388 ENSMUSG00000101856 1700096K18Rik - - 5|5 B1 RIKEN cDNA 1700096K18 gene ncRNA 100526461 NR_037206 ENSMUSG00000080441 Mir1249 mir-1249|mmu-mir-1249 - 15 E2|15 40.25 cM microRNA 1249 ncRNA 619517 Mm.391018 NM_001038500 ENSMUSG00000073396 Esp1 EG619517|Gm6084 - 17|17 B2 exocrine gland secreted peptide 1 protein-coding 102636682 XR_382285 Gm33684 - - 13 A4|13 predicted gene, 33684 ncRNA 108279 Csf1r-rs Csfgr-rs - - colony stimulating factor 1 receptor (granulocyte), related sequence pseudo 12274 Mm.20247 NM_016704 ENSMUSG00000022181 C6 AW111623 - 15 A1|15 1.97 cM complement component 6 protein-coding 14677 Mm.254629 NM_010305 ENSMUSG00000057614 Gnai1 AU046200|Gialpha1|Gnai-1 - 5 A3|5 8.16 cM guanine nucleotide binding protein (G protein), alpha inhibiting 1 protein-coding 101055696 LOC101055696 - - 18 E4 glucosamine 6-phosphate N-acetyltransferase pseudogene pseudo 381822 Mm.5935 NR_037955 ENSMUSG00000098318 Lockd 1190002F15Rik|AI120476|Droc - 6|6 G1 lncRNA downstream of Cdkn1b ncRNA 71960 Mm.158289 NM_028021 ENSMUSG00000030739 Myh14 2400004E04Rik|II-C|NHMCII|NMHC II-C - 7|7 B3 myosin, heavy polypeptide 14 protein-coding 105242564 Gm38741 - - 5|5 predicted gene, 38741 protein-coding 12121 Mm.177181 NM_009753 ENSMUSG00000003452 Bicd1 B830009D06Rik|bic-D 1 - 6|6 G3 BICD cargo adaptor 1 protein-coding 70840 Mm.332570 NM_027572 ENSMUSG00000019834 Slc22a16 4921504E14Rik|CT2|FLIPT2|OCT6|OKB1 - 10|10 B1 solute carrier family 22 (organic cation transporter), member 16 protein-coding 492857 Sluc23 - - 13 26.25 cM susceptibility to lung cancer 23 unknown 20150 rsm1 rsm-1 - - defective resistance to Schistosoma mansoni unknown 223601 Mm.246108 NM_144846 ENSMUSG00000022378 Fam49b 0910001A06Rik|AW122079 - 15|15 D1 family with sequence similarity 49, member B protein-coding 17246 Mm.22670 NM_010786 ENSMUSG00000020184 Mdm2 1700007J15Rik|AA415488|Mdm-2 - 10 D2|10 66.32 cM transformed mouse 3T3 cell double minute 2 protein-coding 53001 45K20 - - - DNA segment, 45K20 unknown 102638605 XR_381135 Gm35131 - - 11 A4|11 predicted gene, 35131 ncRNA 102638242 XR_384203 Gm34851 - - 15 D3|15 predicted gene, 34851 ncRNA 102636094 Gm33261 - - 2|2 predicted gene, 33261 ncRNA 102632466 XR_379921 Gm26962 - - 9 F3|9 predicted gene, 26962 ncRNA 71162 Mm.158598 NM_027702 ENSMUSG00000030463 4933421I07Rik - - 7|7 B3 RIKEN cDNA 4933421I07 gene protein-coding 108168006 XR_001780623 Gm46355 - - 12 C2|12 predicted gene, 46355 ncRNA 665612 Gm7712 EG665612 - 13|13 B3 BTB (POZ) domain containing 3 pseudogene pseudo 76453 Mm.250438 NM_029614 ENSMUSG00000039405 Prss23 2310046G15Rik|4930479H08Rik|AI790574|Spuve - 7|7 D3 protease, serine 23 protein-coding 664946 Gm7417 EG664946 - 1|1 A1 predicted gene 7417 pseudo 675363 Gm9640 - - 5 E5|5 predicted gene 9640 pseudo 102639225 Mm.109095 NR_153374 ENSMUSG00000102936 Gm35584 - - 3 E1|3 predicted gene, 35584 ncRNA 110728 Odc-rs20 - - - ornithine decarboxylase, related sequence 20 protein-coding 69297 Mm.250465 NM_027026 ENSMUSG00000020878 Lrrc46 1700006D24Rik - 11|11 D leucine rich repeat containing 46 protein-coding 100417431 Gm18609 - - 6|6 F3 Rho GTPase activating protein 20 pseudogene pseudo 102466206 NR_105868 ENSMUSG00000098606 Mir6903 Gm27797|mmu-mir-6903 - 1|1 E4 microRNA 6903 ncRNA 59001 Mm.27444 NM_021498 ENSMUSG00000028394 Pole3 1810034K18Rik|YBL1 - 4|4 B3 polymerase (DNA directed), epsilon 3 (p17 subunit) protein-coding 62542 D11Mit185 - - 11 16.15 cM DNA segment, Chr 11, Massachusetts Institute of Technology 185 unknown 68310 Mm.273806 NM_026670 ENSMUSG00000043872 Zmym1 5830412B09Rik|AW209050 - 4|4 D2.2 zinc finger, MYM domain containing 1 protein-coding 75939 Mm.221520 NM_029482 ENSMUSG00000027811 4930579G24Rik - - 3|3 E3 RIKEN cDNA 4930579G24 gene protein-coding 216350 Mm.22270 NM_146010 ENSMUSG00000034127 Tspan8 C76990|E330007O21Rik|Tm4sf3 - 10|10 D2 tetraspanin 8 protein-coding 210376 Mm.441613 NM_177594 ENSMUSG00000035078 Mtmr9 9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3 - 14|14 D1 myotubularin related protein 9 protein-coding 665635 Mm.450149 NR_136917 Gm14486 - - 2|2 B predicted gene 14486 ncRNA 213171 Mm.133083 NM_175440 ENSMUSG00000050762 Prss27 CAPH2|Mpn|marapsin - 17 A3.3|17 12.21 cM protease, serine 27 protein-coding 108167384 LOC108167384 - - - killer cell lectin-like receptor 3 pseudo 73112 Mm.276041 NM_028440 ENSMUSG00000078453 Abracl 1700028I04Rik|3110003A17Rik - 10|10 A3 ABRA C-terminal like protein-coding 259157 Olfr563-ps1 MOR0-4P - 7|7 E3 olfactory receptor 563, pseudogene 1 pseudo 328576 Mm.400211 NR_040347 ENSMUSG00000116396 Gm20556 A430075N02 - 15|15 E2 predicted gene, 20556 ncRNA 100034876 Hrtfm5 - - 2 69.2 cM heart failure modifier 5 unknown 100041306 Mm.360540 NM_001242945 ENSMUSG00000094132 Gm3264 - - 14 A1|14 predicted gene 3264 protein-coding 102631870 Mm.489106 XR_386294 Gm30094 - - 18 E1|18 predicted gene, 30094 ncRNA 100316819 NR_035493 ENSMUSG00000088414 Mir1967 mir-1967|mmu-mir-1967 - 8 E2|8 72.33 cM microRNA 1967 ncRNA 108468 Ms62 MMS62 - - minisatellites detected by probe MMS62 other 96946 T25612 - - - expressed sequence T25612 unknown 100035755 Cfcd - - - contextual fear conditioning unknown 105243559 XR_871318 Gm39448 - - 9 F3|9 predicted gene, 39448 ncRNA 791375 Mm.484654 Gm9932 - - - predicted gene 9932 unknown 666187 XM_982184 ENSMUSG00000094043 Gm7971 - - 5 E3|5 predicted gene 7971 protein-coding 242669 Mm.215814 NM_172875 ENSMUSG00000028789 Azin2 4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp - 4|4 D2.2 antizyme inhibitor 2 protein-coding 100417688 Gm18765 - - 6|6 B2.3 Crn, crooked neck-like 1 pseudogene pseudo 56568 200H7R - - - DNA segment, 200H7R unknown 107983 Amh-rs6 - - - anti-Mullerian hormone, related sequence 6 protein-coding 53730 D17Zt2 D17Mia2 - - DNA segment, Chr 17, Zdenek Trachtulec 2 unknown 109205 Mm.153750 NM_175407 ENSMUSG00000038248 Sobp 2900009C16Rik|5330439J01Rik|JXC1|jc - 10 B2|10 22.89 cM sine oculis binding protein protein-coding 100038721 Gm10781 - - - predicted gene 10781 protein-coding 546282 Mm.391219 NM_001081657 ENSMUSG00000093923 Gm5935 EG546282 - X|X A2 predicted gene 5935 protein-coding 108594 Iapls3-51 - - - intracisternal A particle, lymphocyte specific, probe 3-51 other 102634022 XR_386422 Gm31707 - - 18 E4|18 predicted gene, 31707 ncRNA 52857 Mm.27366 NM_027898 ENSMUSG00000001248 Gramd1a 1300003M23Rik|AI415002|AW547240|D7Bwg0611e - 7 B1|7 19.3 cM GRAM domain containing 1A protein-coding 319170 NM_178184 ENSMUSG00000069309 Hist1h2an - - 13|13 A3.1 histone cluster 1, H2an protein-coding 110120404 LOC110120404 - - - VISTA enhancer mm605 biological-region 100039865 LOC100039865 - - 5|5 C3.3 uncharacterized LOC100039865 protein-coding 105246736 Gm41978 - - 1|1 predicted gene, 41978 ncRNA 102637493 XR_001779016 Gm34286 - - 1 C5|1 predicted gene, 34286 ncRNA 105245730 XR_874524 Gm41133 - - 14 B|14 predicted gene, 41133 ncRNA 75734 Mm.396863 NM_029409 ENSMUSG00000026150 Mff 5230400G24Rik|AI314724 - 1|1 C5 mitochondrial fission factor protein-coding 108488 Ms77 MMS77 - - minisatellites detected by probe MMS77 other 231287 Mm.32775 NM_153389 ENSMUSG00000046808 Atp10d 9830145H18Rik|ATPVD|D5Buc24e - 5|5 C3.2 ATPase, class V, type 10D protein-coding 257755 Olfr833-ps1 EG257755|GA_x5J8B7W6RL5-13870817-13871726 - 9|9 A2 olfactory receptor 833, pseudogene 1 pseudo 52794 D16Jhu21e - - - DNA segment, Chr 16, Johns Hopkins University 21, expressed unknown 102639204 LOC102639204 - - 6 C1 transmembrane protein 258 pseudogene pseudo 546511 NM_001099304 ENSMUSG00000078130 Gm11555 - - 11|11 D predicted gene 11555 unknown 102631816 XR_874996 Gm30057 - - 15 A1|15 predicted gene, 30057 ncRNA 217217 Mm.216432 NM_148953 ENSMUSG00000034768 Asb16 - - 11|11 D ankyrin repeat and SOCS box-containing 16 protein-coding 111876 Iap3rb9 - - - intracisternal A-type particle, U3 region, SINE repeat b-9 other 223417 Gm4824 EG223417|Ppia-ps15_175.1 - 15|15 B1 peptidyl-prolyl cis-trans isomerase A pseudogene 15_175.1 pseudo 57755 Mm.440590 NM_021317 ENSMUSG00000047108 Dnajb7 4933424H20Rik|Dj5|mDj5 - 15|15 E1 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 105246814 XR_879133 Gm42038 - - 8 D1|8 predicted gene, 42038 ncRNA 100862441 LOC100862441 - - - protein CDV3-like pseudo 70976 Mm.188505 NM_027630 ENSMUSG00000078442 Ccdc105 4931413A09Rik - 10|10 C1 coiled-coil domain containing 105 protein-coding 100416799 Gm18260 - - 13|13 B3 zinc finger protein 820 pseudogene pseudo 667273 Mm.480255 NM_001166745 ENSMUSG00000091435 Vmn1r115 EG667273|Gm8549 - 7|7 A3 vomeronasal 1 receptor 115 protein-coding 626797 Gm6706 EG626797 - 3|3 E3 predicted gene 6706 protein-coding 20215 Mm.1276 NM_009118 ENSMUSG00000056055 Sag A930001K18Rik|Arr1|Irbp|arrestin - 1 D|1 44.44 cM S-antigen, retina and pineal gland (arrestin) protein-coding 105244648 XR_867998 LOC105244648 - - 4 C7 uncharacterized LOC105244648 ncRNA 384732 Mm.457863 NM_001162940 ENSMUSG00000062987 Olfr715b EG384732|Gm10081 - 7|7 E3 olfactory receptor 715B protein-coding 100504091 Gm20058 - - 1|1 53.68 cM tubulin-specific chaperone A-like pseudo 22784 Mm.1396 NM_011773 ENSMUSG00000029151 Slc30a3 Znt3 - 5 B1|5 16.97 cM solute carrier family 30 (zinc transporter), member 3 protein-coding 15400 Mm.71533 NM_010452 ENSMUSG00000079560 Hoxa3 Hox-1.5|Mo-10 - 6 B3|6 25.4 cM homeobox A3 protein-coding 102633550 XR_373640 Gm31348 - - 1 H1|1 predicted gene, 31348 ncRNA 108167543 XR_001778616 Gm46048 - - 8 C4|8 predicted gene, 46048 ncRNA 667331 Gm8578 EG667331 - X|X F3 predicted gene 8578 pseudo 102633910 Gm16315 - - 10|10 39.72 cM predicted gene 16315 ncRNA 100039045 Mm.375471 NM_001177579 ENSMUSG00000073116 Gm10471 - - 5|5 B1 predicted gene 10471 protein-coding 668799 Gm13935 - - 2|2 E3 ribosomal protein S3A pseudogene pseudo 102634745 LOC102634745 - - 17 E5 prothymosin alpha pseudogene pseudo 69163 Mm.238455 NM_001081210 ENSMUSG00000026248 Mrpl44 1810030E18Rik|5730593H20Rik|AI463302 - 1|1 C4 mitochondrial ribosomal protein L44 protein-coding 109407 Bmd4 - - 15 22.92 cM bone mineral density 4 unknown 12859 Mm.180182 NM_009942 ENSMUSG00000061518 Cox5b - - 1|1 B cytochrome c oxidase subunit Vb protein-coding 105246482 XR_877528 Gm41767 - - 18 E2|18 predicted gene, 41767 ncRNA 493121 Bsbob3 - - 6 25.86 cM BSB obesity 3 unknown 668618 XM_001004349 Gm9271 EG668618 - 7|7 B3 predicted gene 9271 protein-coding 106014248 Hbb-hs-62.5 -60HSs|-62/-60HSs|5'HS-60/-62|HS-60.7|HS-62.5 - 7 E3 beta-globin -60 hypersensitive sites biological-region 665629 Gm7720 EG665629 - 18|18 A2 predicted gene 7720 pseudo 71820 Mm.88053 NM_001008498 ENSMUSG00000039715 Wdr34 3200002I06Rik - 2|2 B WD repeat domain 34 protein-coding 100502854 Mm.168541 D030029J20Rik AW111866 - 2|2 RIKEN cDNA D030029J20 gene unknown 100093638 Trnal-aag - - - transfer RNA leucine (anticodon AAG) tRNA 628133 Mm.390280 XR_380162 Platr6 Gm6846 - 10 A3|10 pluripotency associated transcript 6 ncRNA 11733 Mm.334444 NM_031158 ENSMUSG00000031543 Ank1 Ank-1|nb|pale - 8 A2|8 11.42 cM ankyrin 1, erythroid protein-coding 434693 Mrto4-ps2 Gm5633 - 12 A1.3|12 mRNA turnover 4, pseudogene 2 pseudo 11881 Mm.300178 NM_009712 ENSMUSG00000042082 Arsb 1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1 - 13 C3|13 47.88 cM arylsulfatase B protein-coding 58991 Mm.379095 NM_021488 ENSMUSG00000064177 Ghrl 2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46 - 6 E3|6 52.84 cM ghrelin protein-coding 76886 Mm.44355 NM_029784 ENSMUSG00000032224 Fam81a 6430514L14Rik - 9|9 D family with sequence similarity 81, member A protein-coding 61731 D5Mit261 - - - DNA segment, Chr 5, Massachusetts Institute of Technology 261 unknown 102637825 XR_870632 Gm34538 - - 9 A4|9 predicted gene, 34538 ncRNA 100042802 Mm.395595 NM_183203 AI463229 9130430E04 - 13|13 A3.3 expressed sequence AI463229 unknown 100415979 Gm17850 - - 7|7 A1 metadherin pseudogene pseudo 246738 Mm.101927 NM_138664 ENSMUSG00000039763 Dnajc28 BC020175|ORF28 - 16|16 C3.3 DnaJ heat shock protein family (Hsp40) member C28 protein-coding 100035259 Wght3 - - - weight 3 unknown 100416380 Gm18085 - - 18|18 A2 predicted gene, 18085 pseudo 100036127 Dbsq3 - - - diabetes susceptibility QTL 3 unknown 105242535 XR_868604 Gm20485 - - 5 G2|5 76.03 cM predicted gene 20485 ncRNA 100417790 Gm18827 - - 12|12 D3 phosphoglycerate mutase family member 5 pseudogene pseudo 100316735 NR_035526 ENSMUSG00000087855 Mir432 mmu-mir-432 - 12 F1|12 60.39 cM microRNA 432 ncRNA 105243233 Mm.475068 NM_173782 Gm9725 4631402N15Rik|EG70793 - 8|8 C2 predicted gene 9725 ncRNA 97694 C77583 - - - expressed sequence C77583 unknown 57915 Mm.286353 NM_019636 ENSMUSG00000029174 Tbc1d1 1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108 - 5 C3.1|5 32.8 cM TBC1 domain family, member 1 protein-coding 100417768 Gm17121 - - 14|14 A1 esterase D/formylglutathione hydrolase pseudogene pseudo 107857 Tel15p - - - telomeric sequence, Chr 15, centromere end protein-coding 100042776 Mm.458802 NM_001177564 ENSMUSG00000092019 Gm4027 - - 12 D2|12 predicted gene 4027 protein-coding 101055991 Gm13772 - - 2 E1|2 50.39 cM predicted gene 13772 pseudo 111451 Mtv55 - - - mammary tumor virus locus 55 other 100041981 Gm3605 - - 1|1 C1.1 predicted gene 3605 pseudo 94053 Ms10ad MMS10-AD - - minisatellite 10ad detected by probe MMS10 other 408080 D6Wum21 - - - DNA segment, Chr 6, Washington University School of Medicine 21 unknown 108620 Iap5rb18 - - - intracisternal A-type particle, U5 region, SINE repeat b-18 other 100503991 Mm.367353 NM_001195034 ENSMUSG00000012777 Acp4 Acpt|EG546967|Gm1432 - 7|7 B3 acid phosphatase 4 protein-coding 432572 Mm.438022 NM_001029936 ENSMUSG00000042331 Specc1 2810012G08Rik|B230396K10Rik|Cytsb - 11|11 B2 sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 625835 Gm6630 EG625835 - 16|16 B1 predicted pseudogene 6630 pseudo 108168850 Gm37636 - - 3 A3|3 40S ribosomal protein S20 pseudogene pseudo 258403 Mm.357297 NM_146408 ENSMUSG00000111306 Olfr1065 MOR190-1 - 2|2 D olfactory receptor 1065 protein-coding 192167 Mm.316080 NM_138666 ENSMUSG00000063887 Nlgn1 6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070 - 3|3 A3 neuroligin 1 protein-coding 18412 Mm.40828 NM_011018 ENSMUSG00000015837 Sqstm1 A170|OSF-6|Osi|STAP|STONE14|p62 - 11|11 B1.3 sequestosome 1 protein-coding 102635013 Mm.404796 NR_151619 ENSMUSG00000089787 Gm15825 - - 1 A3|1 6.04 cM predicted gene 15825 ncRNA 100043289 Gm15575 - - 16|16 B4 predicted gene 15575 pseudo 101055793 LOC101055793 - - X F3 histidine-rich glycoprotein-like pseudo 637896 Mm.389957 NM_001105189 ENSMUSG00000091962 Vmn2r78 - - 7|7 D3 vomeronasal 2, receptor 78 protein-coding 56515 Mm.253542 NM_019706 ENSMUSG00000024317 Rnf138 2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d - 18|18 A2 ring finger protein 138 protein-coding 102640920 XM_011240963 ENSMUSG00000109713 Pvrig Gm36869 - 5 G2|5 poliovirus receptor related immunoglobulin domain containing protein-coding 723942 NR_029748 ENSMUSG00000065613 Mir92-2 Mirn92-2|mir-92a-2 - X A5|X microRNA 92-2 ncRNA 100038374 Mm.127249 NR_040530 ENSMUSG00000074555 Gm10714 - - 2 H4|2 predicted gene 10714 ncRNA 100035285 Hdlq50 - - - HDL QTL 50 unknown 100035138 Cspt - - - CD8 single positive T cell unknown 58899 Mm.392742 A130009E19Rik AI449249 - - RIKEN cDNA A130009E19 gene protein-coding 102633411 XR_376250 Gm31244 - - 3 H3|3 predicted gene, 31244 ncRNA 62639 D14Mit141 - - 14 24.28 cM DNA segment, Chr 14, Massachusetts Institute of Technology 141 unknown 100503964 XM_017318019 Gm17266 - - 18 E4|18 57.53 cM predicted gene, 17266 protein-coding 54484 Mm.270484 NM_018810 ENSMUSG00000029922 Mkrn1 RFP - 6|6 B1 makorin, ring finger protein, 1 protein-coding 100504187 Gm13392 - - 2|2 15.94 cM predicted gene 13392 ncRNA 319247 Mm.473527 NM_175680 ENSMUSG00000044125 9530080O11Rik - - 4|4 C5 RIKEN cDNA 9530080O11 gene ncRNA 239652 Mm.207453 NM_173769 ENSMUSG00000022987 Zfp641 9930016F01Rik|Znf641 - 15|15 F1 zinc finger protein 641 protein-coding 359875 DXMgc26 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 26 unknown 359933 DXMgc90 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 90 unknown 15001 Mm.116 NM_008206 ENSMUSG00000024334 H2-Oa H-2Oa - 17 B1|17 17.98 cM histocompatibility 2, O region alpha locus protein-coding 108168678 XR_001782941 LOC108168678 - - - protein FAM205A-like pseudo 100041106 XR_874547 Gm3141 - - 14 B|14 predicted gene 3141 ncRNA 102637448 Mm.146933 XR_389176 ENSMUSG00000085336 Gm11732 - - 11 E2|11 82.96 cM predicted gene 11732 ncRNA 100038479 Mm.387034 NR_045882 ENSMUSG00000074919 Gm10787 - - 10 C1|10 predicted gene 10787 ncRNA 74408 Mm.84567 NM_028911 ENSMUSG00000072983 4933414I15Rik 4932442I06Rik|4933401E19Rik - 11|11 B1.3 RIKEN cDNA 4933414I15 gene unknown 100862048 Gm21430 - - 14|14 predicted gene, 21430 pseudo 21277 T(8C3;16B5)164Dn T(8;16)164Dn|T164Dn - - reciprocal translocation, Chr 8, cytogenetic band C3; and Chr 16, cytogenetic band B5, Davisson 164 other 102638350 Gm16138 - - 15|15 14.93 cM predicted gene 16138 pseudo 17687 Mm.24192 NM_013600 ENSMUSG00000007035 Msh5 Mut5 - 17 B1|17 18.57 cM mutS homolog 5 protein-coding 108168021 Gm46370 - - 12 D2|12 40S ribosomal protein S23 pseudogene pseudo 69086 Mm.7290 XR_391164 ENSMUSG00000097115 1810019N24Rik 4930481I22Rik - 7|7 A1 RIKEN cDNA 1810019N24 gene ncRNA 102631612 Mm.410759 NR_153861 E130101E03Rik - - 9|9 A4 RIKEN cDNA E130101E03 gene ncRNA 628935 Gm14200 - - 2|2 H1 predicted gene 14200 protein-coding 100035552 Angvq2 - - - angiogenesis by VEGF QTL 2 unknown 27015 Mm.89926 NM_012048 ENSMUSG00000021668 Polk DINP|Dinb1 - 13|13 D1 polymerase (DNA directed), kappa protein-coding 102637104 XR_388943 Gm34000 - - 11 C|11 predicted gene, 34000 ncRNA 100093656 Trnap-ugg - - - transfer RNA proline (anticodon UGG) tRNA 218811 Mm.173119 NM_172596 ENSMUSG00000039367 Sec24c 2610204K03Rik|mKIAA0079 - 14|14 A3 Sec24 related gene family, member C (S. cerevisiae) protein-coding 109782 Mph1 Mph-1 - - macrophage antigen 1 protein-coding 102640351 XR_379308 ENSMUSG00000111074 Gm36435 - - 9 A5.1|9 predicted gene, 36435 ncRNA 100042144 Mm.483167 NM_001100610 ENSMUSG00000073255 Gm14632 - - X|X A3.1 predicted gene 14632 protein-coding 76257 Mm.296560 NM_023805 ENSMUSG00000010064 Slc38a3 0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT - 9 F1|9 58.69 cM solute carrier family 38, member 3 protein-coding 75209 Mm.40436 NM_029210 ENSMUSG00000051111 Sv2c 4930527L09Rik|AI841971 - 13|13 D1 synaptic vesicle glycoprotein 2c protein-coding 210106 Mm.315959 NM_198600 ENSMUSG00000034575 Papd7 LAK-1|POLK|Pols|TRF4|TRF4-1 - 13 B3|13 35.55 cM PAP associated domain containing 7 protein-coding 100312500 Vmn1r-ps54 - - 7 A1|7 7.22 cM vomeronasal 1 receptor, pseudogene 54 pseudo 13002 Mm.140761 NM_016775 ENSMUSG00000000826 Dnajc5 2610314I24Rik|AU018536|Csp - 2 H4|2 103.63 cM DnaJ heat shock protein family (Hsp40) member C5 protein-coding 12524 Mm.1452 NM_019388 ENSMUSG00000022901 Cd86 B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2 - 16 B3|16 25.72 cM CD86 antigen protein-coding 404247 Mrgpra14 MrgA14 - - MAS-related GPR, member A14 protein-coding 108168573 XM_017318777 Gm46716 - - Y A2|Y predicted gene, 46716 protein-coding 61005 D4Mit103 - - 4 2.77 cM DNA segment, Chr 4, Massachusetts Institute of Technology 103 unknown 493174 Vpantd - - 7 66.09 cM VPA induced neural tube defect unknown 77264 Mm.207298 NM_029888 ENSMUSG00000026135 Zfp142 9330177B18Rik|BB154236|mKIAA0236 - 1 C3|1 38.54 cM zinc finger protein 142 protein-coding 72205 Mm.154121 NM_028153 ENSMUSG00000040811 Eml2 1600029N02Rik|EMAP-2 - 7|7 A3 echinoderm microtubule associated protein like 2 protein-coding 664608 Mm.491809 NM_001039698 ENSMUSG00000079628 Rhox4g Rhox4.6|Rhox4.7|Rhox4f - X|X A3.3 reproductive homeobox 4G protein-coding 102632095 XR_386296 Gm22219 - - 18 E1|18 predicted gene, 22219 ncRNA 100039340 Vmn1r-ps88 - - 7|7 vomeronasal 1 receptor Vmn1r-ps88 pseudogene pseudo 246049 Mm.291280 NM_153170 ENSMUSG00000020264 Slc36a2 A530067G19Rik|PAT2|Tramd1 - 11|11 B1.3 solute carrier family 36 (proton/amino acid symporter), member 2 protein-coding 102632816 XR_374344 Gm30792 - - 2 B|2 predicted gene, 30792 ncRNA 108169090 LOC108169090 - - 5 G2 40S ribosomal protein S2 pseudogene pseudo 214048 Mm.46782 NM_027663 ENSMUSG00000025762 Larp1b 1700108L22Rik|4933421B21Rik|AA690246|Larp2 - 3|3 B La ribonucleoprotein domain family, member 1B protein-coding 226143 Mm.329866 NM_001001446 ENSMUSG00000025197 Cyp2c23 AW107714|BC034834|Cyp2c44|b2b386Clo - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 23 protein-coding 258703 Mm.377644 NM_146708 ENSMUSG00000070379 Olfr402 MOR255-4 - 11|11 B5 olfactory receptor 402 protein-coding 102466258 NR_106202 ENSMUSG00000098896 Mir3473g Gm27751|mmu-mir-3473g - 2|2 F1 microRNA 3473g ncRNA 110120444 LOC110120444 - - - VISTA enhancer mm1018 biological-region 100043204 Mm.486824 Trav14n-1 Gm10896 - 14|14 C2 T cell receptor alpha variable 14N-1 other 27454 53T - - - DNA segment, 53T unknown 85171 D12Mit61 - - 12 18.06 cM DNA segment, Chr 12, Massachusetts Institute of Technology 61 unknown 100035040 Rthyd1 - - 7 69.01 cM resistance to thymic deletion 1 unknown 100039100 XM_017315327 Gm2046 - - 12 D2|12 predicted gene 2046 protein-coding 104160 H9 H-9 - - histocompatibility 9 protein-coding 77971 A930037O16Rik - - 6|6 RIKEN cDNA A930037O16 gene protein-coding 27450 1S - - - DNA segment, 1S unknown 102639213 Gm35573 - - 16|16 predicted gene, 35573 ncRNA 102634759 Gm32265 - - 12|12 predicted gene, 32265 protein-coding 228785 Mm.250604 NM_001081044 ENSMUSG00000027470 Mylk2 9830004H17Rik|BB138278 - 2|2 H1 myosin, light polypeptide kinase 2, skeletal muscle protein-coding 100036312 Cplaq8 - - 3 2.01 cM circadian period of locomotor activity 8 unknown 19629 Rb(9.12)10Tu Rb10Tu - - Robertsonian translocation, Chr 9 and 12, Tubingen 10 other 110120563 LOC110120563 - - - VISTA enhancer mm1061 biological-region 102633183 Gm12219 - - 11 B1.3|11 32.06 cM predicted gene 12219 pseudo 623505 Gm6436 EG623505 - 13|13 B3 predicted gene 6436 pseudo 105246112 XR_001782023 Gm41454 - - 16 B4|16 predicted gene, 41454 ncRNA 116890 Eae25 - - 18 54.83 cM experimental allergic encephalomyelitis susceptibility 25 unknown 61605 D9Mit259 - - 9 38.89 cM DNA segment, Chr 9, Massachusetts Institute of Technology 259 unknown 76457 Mm.440373 NM_172428 ENSMUSG00000068114 Ccdc134 2310042L06Rik|AW208859 - 15|15 E1 coiled-coil domain containing 134 protein-coding 62073 D10Mit55 - - 10 23.07 cM DNA segment, Chr 10, Massachusetts Institute of Technology 55 unknown 102635822 XR_391373 Gm33067 - - 7 B3|7 predicted gene, 33067 ncRNA 641376 Mm.288374 NM_001037170 ENSMUSG00000005674 Tomm40l - - 1|1 H3 translocase of outer mitochondrial membrane 40-like protein-coding 791391 NR_036601 Gm10165 - - 12 B2|12 predicted gene 10165 ncRNA 75058 Mm.183467 NR_045974 ENSMUSG00000105185 4930519H02Rik - - 5|5 A2 RIKEN cDNA 4930519H02 gene ncRNA 16918 Mm.1055 NM_008506 ENSMUSG00000028654 Mycl AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38 - 4 D2.2|4 57.36 cM v-myc avian myelocytomatosis viral oncogene lung carcinoma derived protein-coding 61161 D12Mit83 - - 12 9.69 cM DNA segment, Chr 12, Massachusetts Institute of Technology 83 unknown 101056131 LOC101056131 - - - uncharacterized LOC101056131 protein-coding 245855 Mm.372339 BC026513 - - 18|18 E3 cDNA sequence BC026513 protein-coding 28054 D16Ium15e D16Ium15 - - DNA segment, Chr 16, Indiana University Medical 15, expressed unknown 22135 Mm.246563 NM_009444 Tgoln2 TGN38B|TGN41|TGN46|Ttgn2 - - trans-golgi network protein 2 protein-coding 108168739 XR_001783231 Gm13291 - - 2 A1|2 8.64 cM predicted gene 13291 ncRNA 102635146 XR_868496 Gm32558 - - 5 C3.3|5 predicted gene, 32558 ncRNA 102633324 Mm.411880 XR_379935 ENSMUSG00000087469 Gm16142 - - 9 F3|9 68.31 cM predicted gene 16142 ncRNA 102467438 n-TSgct5 n-Ts19 - 13 A3.1|13 nuclear encoded tRNA serine 5 (anticodon GCT) tRNA 109568 Rn7s6 Gm22179|Rn7s-6 - - 7S RNA 6 scRNA 75556 Mm.17649 NM_029335 ENSMUSG00000011154 Cfap161 1700026D08Rik|AW047638|AW551802 - 7|7 D3 cilia and flagella associated protein 161 protein-coding 107749 Zfp122-rs Znf74rs - - zinc finger protein 122, related sequence protein-coding 102634258 Mm.391574 XR_873150 Gm31887 Gm43385 - 13 A2|13 predicted gene, 31887 ncRNA 116759 Drb6 - - - dopamine receptor binding 6 unknown 723845 NR_029769 ENSMUSG00000065417 Mir340 Mirn340|mir-340|mmu-mir-340 - 11|11 B1.3 microRNA 340 ncRNA 30785 Mm.224189 NM_080285 ENSMUSG00000000416 Cttnbp2 3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758 - 6|6 A2 cortactin binding protein 2 protein-coding 70472 Mm.221758 NM_027435 ENSMUSG00000022360 Atad2 2610509G12Rik - 15|15 D1 ATPase family, AAA domain containing 2 protein-coding 102466817 NR_106070 ENSMUSG00000098544 Mir7211 Gm27536|mmu-mir-7211 - 10|10 C2 microRNA 7211 ncRNA 329064 Mm.308481 NM_181422 ENSMUSG00000037578 Pkd2l1 B830002B15|BC046386|PCL|PKD2L|Pkdl|TRPP3 - 19 C3|19 36.91 cM polycystic kidney disease 2-like 1 protein-coding 21872 Mm.4342 NM_009386 ENSMUSG00000030516 Tjp1 ZO1 - 7 C|7 35.02 cM tight junction protein 1 protein-coding 93871 Mm.240871 NM_145125 ENSMUSG00000022914 Brwd1 5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5 - 16|16 C4 bromodomain and WD repeat domain containing 1 protein-coding 11516 Mm.3407 NM_009625 ENSMUSG00000024256 Adcyap1 PACAP - 17|17 E5 adenylate cyclase activating polypeptide 1 protein-coding 108167308 LOC108167308 - - 11 B5 Rab34 Hedgehog-responsive enhancer biological-region 102638919 XR_389069 Gm35365 - - 11 E1|11 predicted gene, 35365 ncRNA 105242736 XM_017321875 LOC105242736 - - 6 E2 histone H3.3-like protein-coding 53817 Mm.439827 NM_019693 ENSMUSG00000019432 Ddx39b 0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh - 17 B1|17 18.6 cM DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B protein-coding 110047 Kifc4c - - - kinesin family member C4C protein-coding 100040733 Gm13295 - - 2|2 A1 predicted gene 13295 protein-coding 17701 Mm.256509 NM_010835 ENSMUSG00000048450 Msx1 AA675338|AI324650|Hox-7|Hox7|Hox7.1|msh - 5 B3|5 20.21 cM msh homeobox 1 protein-coding 109471 Lore1 - - 1 44.69 cM loss of righting induced by ethanol 1 unknown 102639544 Gm35834 - - 16|16 predicted gene, 35834 ncRNA 621362 Gm6217 EG621362 - 1|1 C5 predicted gene 6217 protein-coding 630927 Gm7047 EG630927 - 5 A3|5 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 434609 Mm.390539 Ighv1-84 EG434609|Gm5629 - 12|12 F2 immunoglobulin heavy variable 1-84 other 111972 Rnu1a2 Rnu1a-2 - - U1a2 small nuclear RNA snRNA 72351 Mm.474795 NM_028208 ENSMUSG00000074925 Ptar1 1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677 - 19|19 B protein prenyltransferase alpha subunit repeat containing 1 protein-coding 71299 4933439N06Rik - - 6|6 RIKEN cDNA 4933439N06 gene protein-coding 76968 Mm.195782 2310046K23Rik - - 3|3 RIKEN cDNA 2310046K23 gene protein-coding 622554 Mm.159757 NM_001165919 ENSMUSG00000024786 Majin 1700123I01Rik - 19|19 A membrane anchored junction protein protein-coding 69804 Mm.27499 NM_027215 ENSMUSG00000006315 Tmem147 2010004E11Rik|5033425B17Rik|Nifie14 - 7|7 B1 transmembrane protein 147 protein-coding 399616 Mm.458969 A130078K24Rik - - - RIKEN cDNA A130078K24 gene protein-coding 102642065 XR_001781667 Gm38594 - - 15 B3.1|15 predicted gene, 38594 ncRNA 241516 Mm.302516 XM_006500496 ENSMUSG00000075249 Fsip2 - - 2|2 D fibrous sheath-interacting protein 2 protein-coding 66179 Mm.390403 NM_025402 ENSMUSG00000025169 Ogfod3 1110031I02Rik - 11|11 E2 2-oxoglutarate and iron-dependent oxygenase domain containing 3 protein-coding 102638037 XR_383310 Gm34702 - - 14 A3|14 predicted gene, 34702 ncRNA 492905 Ltsd4 - - 4 70.02 cM lung tumor shape-determining 4 unknown 105244489 XR_867420 Gm40087 - - 3 F1|3 predicted gene, 40087 ncRNA 330891 Gm5119 EG330891 - 9|9 A2 high mobility group box 2 pseudogene pseudo 15893 Mm.275683 NM_010492 ENSMUSG00000062995 Ica1 69kDa|ICA69 - 6 A1|6 4.38 cM islet cell autoantigen 1 protein-coding 102632003 Gm30186 - - 2|2 predicted gene, 30186 ncRNA 108168732 XR_001783218 LOC108168732 - - 2 G3 sperm motility kinase X-like pseudo 94191 Mm.425794 NM_052977 ENSMUSG00000052551 Adarb2 Adar3|RED2 - 13|13 A1 adenosine deaminase, RNA-specific, B2 protein-coding 404287 Mm.377931 NM_207619 ENSMUSG00000092456 V1rd19 Vmn1r182 - 7|7 A3 vomeronasal 1 receptor, D19 protein-coding 17136 Mm.241355 NM_010758 ENSMUSG00000036634 Mag Gma|siglec-4a - 7 B1|7 19.26 cM myelin-associated glycoprotein protein-coding 60715 D7Mit57 - - 7 9.94 cM DNA segment, Chr 7, Massachusetts Institute of Technology 57 unknown 100499160 Gm20958 - - 12 D1|12 LSM6 homolog, U6 small nuclear RNA associated pseudogene pseudo 100036187 Obsty4 - - - obesity 4 unknown 73262 Mm.396212 1700036O09Rik - - X|X RIKEN cDNA 1700036O09 gene protein-coding 105244216 XR_866502 Gm39864 - - 2 C3|2 predicted gene, 39864 ncRNA 15200 Mm.289681 NM_010415 ENSMUSG00000024486 Hbegf AW047313|Dtr|Dts|Hegfl - 18 B2|18 19.46 cM heparin-binding EGF-like growth factor protein-coding 102634588 XR_876302 Gm32130 - - 16 C4|16 predicted gene, 32130 ncRNA 621998 Mm.353277 NR_045421 Gm6277 - - 18 A1|18 predicted gene 6277 ncRNA 102636003 XR_874182 Gm33198 - - 14 A1|14 predicted gene, 33198 ncRNA 75494 Mm.416848 NR_126468 ENSMUSG00000111986 1700008C04Rik - - 12|12 B3 RIKEN cDNA 1700008C04 gene ncRNA 100101457 Mm.397964 NR_152206 ENSMUSG00000111329 A830035O19Rik - - 9 A5.2|9 RIKEN cDNA A830035O19 gene ncRNA 18034 Mm.102365 NM_019408 ENSMUSG00000025225 Nfkb2 NF-kappaB2|lyt|p49|p49/p100|p50B|p52 - 19 C3|19 38.8 cM nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 protein-coding 331461 Mm.121680 NM_001160403 ENSMUSG00000052372 Il1rapl1 6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2 - X|X C1 interleukin 1 receptor accessory protein-like 1 protein-coding 22770 Mm.244931 NM_009572 ENSMUSG00000022361 Zhx1 - - 15|15 D1 zinc fingers and homeoboxes 1 protein-coding 100417902 Gm13118 - - 4|4 E1 chromobox homolog 3 pseudogene pseudo 111821 Iapls2-25 - - - intracisternal A particle, lymphocyte specific 2-25 other 16678 Mm.183137 NM_008473 ENSMUSG00000046834 Krt1 Krt-2.1|Krt2-1|Krt86 - 15 F2|15 57.06 cM keratin 1 protein-coding 105245684 XM_011244855 ENSMUSG00000095368 Gm3012 100040870 - 14 A1|14 1.99 cM predicted gene 3012 protein-coding 100861861 Mm.60620 NR_073038 Gm21276 - - 7 B3|7 predicted gene, 21276 pseudo 77547 NM_023867 8030498B09Rik - - 9|9 A3 RIKEN cDNA 8030498B09 gene protein-coding 100038392 Mm.440384 NR_040389 ENSMUSG00000085169 Gm10785 - - 16 C4|16 predicted gene 10785 ncRNA 100036347 Asdq6 - - - atrial septal defect QTL 6 unknown 666061 Gm7911 EG666061 - 13|13 B3 high mobility group box 2 pseudogene pseudo 105246709 XR_878538 Gm41954 - - 1 E4|1 predicted gene, 41954 ncRNA 404567 AL118302 - - - expressed sequence AL118302 unknown 235956 NM_146231 ENSMUSG00000069208 Zfp825 - - 13|13 C1 zinc finger protein 825 protein-coding 100038493 Mm.388076 NR_045335 ENSMUSG00000075325 Gm13582 - - 2 C1.2|2 predicted gene 13582 ncRNA 227112 Gm4853 EG227112 - X|X A3.3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene pseudo 101869 Mm.243024 NM_133952 ENSMUSG00000030533 Unc45a AW538196 - 7|7 D2 unc-45 myosin chaperone A protein-coding 258672 Mm.377632 NM_146677 ENSMUSG00000058084 Olfr825 MOR210-1 - 10|10 D3 olfactory receptor 825 protein-coding 100503074 Mm.140012 NR_045347 ENSMUSG00000101089 2610016A17Rik 2610317C19Rik - 19|19 C1 RIKEN cDNA 2610016A17 gene ncRNA 97961 Mm.157216 NM_133800 ENSMUSG00000033099 Nol12 C78541|Nop25 - 15|15 E1 nucleolar protein 12 protein-coding 67702 Mm.28614 NM_001033135 ENSMUSG00000048234 Rnf149 1600023E10Rik|AV037261|C76763|Gm15832|Greul4 - 1|1 B ring finger protein 149 protein-coding 666931 XM_017319049 Gm10573 - - 4|4 D2.2 predicted gene 10573 protein-coding 68108 Mm.119198 NR_015463 Snhg17 9430008C03Rik - 2|2 H1 small nucleolar RNA host gene 17 ncRNA 100041302 Gm13361 - - 2|2 A3 Ngfi-A binding protein 1 pseudogene pseudo 224829 Mm.260989 NM_172622 Trerf1 9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132 - 17|17 C transcriptional regulating factor 1 protein-coding 22785 Mm.27801 NM_011774 ENSMUSG00000005802 Slc30a4 Znt4|lm|znT-4 - 2 E5|2 60.65 cM solute carrier family 30 (zinc transporter), member 4 protein-coding 207521 Mm.247695 NM_172442 ENSMUSG00000039982 Dtx4 AI449438|BC044798|D930042H13|RNF155 - 19|19 A deltex 4, E3 ubiquitin ligase protein-coding 58180 Mm.261602 NM_178922 ENSMUSG00000050240 Hic2 AA409108|HRG22|mKIAA1020 - 16|16 A3 hypermethylated in cancer 2 protein-coding 102640765 Mm.122228 XR_001780720 Gm36757 - - 12 F1|12 predicted gene, 36757 ncRNA 243377 Mm.446302 NM_172888 ENSMUSG00000039215 Svs1 9530003A11 - 6|6 B2.3 seminal vesicle secretory protein 1 protein-coding 574404 Mm.481740 NM_001025383 ENSMUSG00000067771 Gm14685 - - X A7.3|X predicted gene 14685 protein-coding 100042810 Mm.469890 NM_001105075 ENSMUSG00000090662 Vmn2r45 - - 7|7 A1 vomeronasal 2, receptor 45 protein-coding 100035424 Nhil4 - - 8 18.89 cM non-heme iron levels 4 unknown 108167418 Gm45980 - - 7 B3|7 predicted gene, 45980 pseudo 102639229 XM_011250933 Gm35588 - - 7 B3|7 predicted gene, 35588 protein-coding 102638290 Gm13171 - - 4|4 86.17 cM predicted gene 13171 pseudo 53703 D11Mc1 D11McC1 - - DNA segment, Chr 11, McClelland 1 unknown 62206 D16Mit19 - - 16 45.36 cM DNA segment, Chr 16, Massachusetts Institute of Technology 19 unknown 100416038 Gm17884 - - 11|11 B1.3 mucolipin 2 pseudogene pseudo 215772 Mm.246573 NM_172547 ENSMUSG00000050994 Adgb 9130014G24Rik - 10|10 A1 androglobin protein-coding 387242 NR_029723 ENSMUSG00000065400 Mir200a Mirn200a|mir-200a - 4|4 E2 microRNA 200a ncRNA 208727 Mm.318567 NM_207225 ENSMUSG00000026313 Hdac4 4932408F19Rik|HD4 - 1|1 D histone deacetylase 4 protein-coding 102633974 XR_380112 Gm28905 - - 10 A1|10 predicted gene 28905 ncRNA 17951 Mm.290476 NM_010870 ENSMUSG00000071203 Naip5 Birc1e|Lgn1|Naip-rs3 - 13 D1|13 53.05 cM NLR family, apoptosis inhibitory protein 5 protein-coding 328734 Mm.335641 NR_003519 Pisd-ps2 D030013I16Rik - 17|17 A1 phosphatidylserine decarboxylase, pseudogene 2 pseudo 360093 D17Jcs47 - - - DNA segment, Chr 17, John C. Schimenti 47 unknown 111267 Acadm-ps2 - - - acyl-Coenzyme A dehydrogenase, medium chain, pseudogene 2 pseudo 666806 Mm.379796 NM_001177565 ENSMUSG00000079034 Gm8300 EG666806 - 12|12 D2 predicted gene 8300 protein-coding 620877 Gm12933 - - 4|4 D2.2 ribosomal protein S2 pseudogene pseudo 407827 Mm.252519 BC058420 - - - cDNA sequence BC058420 protein-coding 75131 Mm.391482 NR_131021 ENSMUSG00000107622 4930512J16Rik Gm44205 - 6|6 D1 RIKEN cDNA 4930512J16 gene ncRNA 72773 Mm.392577 2810449G22Rik AI465509 - 1|1 RIKEN cDNA 2810449G22 gene protein-coding 667635 Mm.489210 Trav7n-5 EG667635|Gm8740 - 14|14 C2 T cell receptor alpha variable 7N-5 other 110466 Tcrb-V - - - T cell receptor beta, variable region other 102634659 Gm32192 - - 15|15 predicted gene, 32192 ncRNA 668568 Gm9248 EG668568 - 12|12 A1.2 predicted gene 9248 pseudo 58238 Mm.113787 NM_021427 ENSMUSG00000051515 Fam181b A830059I20Rik|AB041569 - 7|7 E1 family with sequence similarity 181, member B protein-coding 102639857 XR_391597 Gm36071 - - 7 C|7 predicted gene, 36071 ncRNA 52726 D17Zt8e - - - DNA segment, Chr 17, Zdenek Trachtulec 8 expressed unknown 233271 Mm.387344 NM_178705 ENSMUSG00000063297 Luzp2 9330154K17Rik|D130073E01 - 7 B5|7 33.23 cM leucine zipper protein 2 protein-coding 108723 Mm.46187 NM_175362 ENSMUSG00000036526 Card11 0610008L17Rik|2410011D02Rik|BIMP3|CARMA1 - 5|5 G2 caspase recruitment domain family, member 11 protein-coding 102639787 Mm.108485 XR_376935 ENSMUSG00000104800 Gm36017 Gm42985 - 5 B3|5 predicted gene, 36017 ncRNA 68794 Mm.39046 NM_026839 ENSMUSG00000068699 Flnc 1110055E19Rik|ABP-280|ABPL|Fln2 - 6 A3.3|6 12.36 cM filamin C, gamma protein-coding 108811 Mm.102168 NM_175369 ENSMUSG00000034795 Ccdc122 4933415L06Rik - 14|14 D3 coiled-coil domain containing 122 protein-coding 112324 Tir3c - - 1 79.54 cM trypanosome infection response 3c unknown 62061 D10Mit16 - - 10 9.82 cM DNA segment, Chr 10, Massachusetts Institute of Technology 16 unknown 102635489 Mm.440451 XR_377534 Gm13857 - - 6 B1|6 14.96 cM predicted gene 13857 ncRNA 102634499 XM_017315681 LOC102634499 - - 13 B3 zinc finger protein 431-like protein-coding 102634541 Mm.95234 XR_373225 Gm28784 - - 1 A3|1 predicted gene 28784 ncRNA 108167773 Gm46192 - - 10 C1|10 predicted gene, 46192 pseudo 102465982 NR_105968 ENSMUSG00000098464 Mir7002 Gm27429|mmu-mir-7002 - 2|2 E4 microRNA 7002 ncRNA 26396 Mm.275436 NM_023138 ENSMUSG00000035027 Map2k2 AA589381|MEK2|MK2|Prkmk2 - 10 C1|10 39.72 cM mitogen-activated protein kinase kinase 2 protein-coding 71507 8430437B07Rik - - 8|8 RIKEN cDNA 8430437B07 gene protein-coding 107963956 LOC107963956 - - X A7.3 green (M) opsin gene upstream regulatory region biological-region 101055671 NM_001322338 ENSMUSG00000087303 Lipo2 EG668114|Gm8981 - 19|19 C1 lipase, member O2 protein-coding 12903 Mm.34797 NM_013496 ENSMUSG00000032291 Crabp1 AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5 - 9 A5.3|9 29.76 cM cellular retinoic acid binding protein I protein-coding 98787 AA409570 - - - expressed sequence AA409570 protein-coding 97140 Mm.267692 C77670 AW822001 - - expressed sequence C77670 protein-coding 62621 D13Mit199 - - 13 24.51 cM DNA segment, Chr 13, Massachusetts Institute of Technology 199 unknown 102634936 Gm21810 - - Y|Y predicted gene, 21810 protein-coding 112186 Gvhd3 - - 2 59.34 cM graft-versus host disease 3 unknown 236899 Mm.166467 NM_177546 ENSMUSG00000035246 Pcyt1b AW045697|CTTbeta - X|X C3 phosphate cytidylyltransferase 1, choline, beta isoform protein-coding 108167871 LOC108167871 - - 11 E2 60S ribosomal protein L21 pseudogene pseudo 102635797 Mm.188440 XR_382901 ENSMUSG00000109853 Gm33045 - - 13 D2.2|13 predicted gene, 33045 ncRNA 668354 Rps12-ps5 EG668354|Gm9122 - 7 B1|7 ribosomal protein S12, pseudogene 5 pseudo 114258 Manz3 QTL-C4.1 - 4 33.96 cM mandible size 3 unknown 240444 Mm.279568 NM_001190373 ENSMUSG00000059852 Kcng2 AA591524 - 18|18 E3 potassium voltage-gated channel, subfamily G, member 2 protein-coding 13288 Del(14)60H Del60H - - deletion, Chr 14, Harwell 60 other 53627 Mm.443425 NM_016913 ENSMUSG00000031169 Porcn 2410004O13Rik|AW045557|DXHXS7465e|Mg61|Mporc|Ppn|mMg61|porc - X A1.1|X 3.7 cM porcupine O-acyltransferase protein-coding 102465199 NR_105800 ENSMUSG00000098417 Mir6379 Gm27730|mmu-mir-6379 - 3|3 C microRNA 6379 ncRNA 100038508 Mm.363192 Gm10797 - - - predicted gene 10797 unknown 100038752 Mm.392859 NR_028580 ENSMUSG00000096937 Gm10825 - - 10 A3|10 predicted gene 10825 ncRNA 109286557 LOC109286557 - - - enhancer eB upstream of Tbx3 biological-region 102633729 Gm31484 - - 5|5 predicted gene, 31484 ncRNA 62992 D17Mit257 - - 17 44.9 cM DNA segment, Chr 17, Massachusetts Institute of Technology 257 unknown 14683 Mm.125770 NM_010309 ENSMUSG00000027523 Gnas 5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6 - 2 H4|2 97.89 cM GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus protein-coding 100034954 Hipp3 HipV13a - 13 24.5 cM hippocampal weight 3 unknown 73641 1700125M20Rik - - X|X RIKEN cDNA 1700125M20 gene protein-coding 62768 D16Mit178 - - 16 45.88 cM DNA segment, Chr 16, Massachusetts Institute of Technology 178 unknown 100418036 Gm8018 EG666276 - 7|7 D3 patatin-like phospholipase domain containing 8 pseudogene pseudo 61288 D2Mit276 - - 2 59.4 cM DNA segment, Chr 2, Massachusetts Institute of Technology 276 unknown 627734 Gm6783 EG627734 - X|X A7.1 forkhead box N3 pseudogene pseudo 667425 Gm8625 EG667425 - 3|3 E3 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 100502732 Gm19343 - - 3 F3|3 46.91 cM predicted gene, 19343 unknown 102633316 XR_389572 Gm31171 - - X A5|X predicted gene, 31171 ncRNA 791075 NR_030432 ENSMUSG00000076444 Mir761 Mirn761|mir-761|mmu-mir-761 - 4 C7|4 microRNA 761 ncRNA 27602 D0Dcr5 - - - DNA segment, Derry C. Roopenian 5 unknown 18504 Mm.192158 NM_011037 ENSMUSG00000004231 Pax2 Opdc|Pax-2 - 19 C3|19 38.09 cM paired box 2 protein-coding 102637162 Gm34046 - - 10|10 predicted gene, 34046 protein-coding 73739 Mm.294441 NM_028634 ENSMUSG00000022428 Cby1 1110014P06Rik|CBY|PGEA14|Pgea1|arb1 - 15 E1|15 chibby family member 1, beta catenin antagonist protein-coding 105244556 XR_867634 Gm40149 - - 3 G3|3 predicted gene, 40149 ncRNA 100503790 Mm.446894 NR_040339 Gm19897 - - 7 B1|7 16.92 cM predicted gene, 19897 ncRNA 665008 Gm7446 EG665008 - 13 A1|13 heterogeneous nuclear ribonucleoprotein F pseudogene pseudo 73929 Mm.399075 4930402C01Rik - - 3|3 RIKEN cDNA 4930402C01 gene protein-coding 211832 Gm4774 EG211832 - 15|15 D1 glycerol-3-phosphate dehydrogenase 1-like pseudogene pseudo 21817 Mm.330731 NM_009373 ENSMUSG00000037820 Tgm2 G[a]h|TG2|TGase2|tTG|tTGas - 2 H1|2 78.72 cM transglutaminase 2, C polypeptide protein-coding 102636255 LOC102636255 - - 17 B1 U6 snRNA-associated Sm-like protein LSm5 pseudo 67717 Mm.329816 NM_026334 ENSMUSG00000024768 Lipf 2310051B21Rik|AV082900 - 19|19 C1 lipase, gastric protein-coding 66443 Mm.2312 NM_025566 ENSMUSG00000044469 Tnfaip8l1 2600017J23Rik|TIPE1 - 17|17 D tumor necrosis factor, alpha-induced protein 8-like 1 protein-coding 102634335 Gm31942 - - Y|Y predicted gene, 31942 ncRNA 66696 Mm.253627 NM_025712 ENSMUSG00000013611 Snx31 4631426E05Rik - 15|15 B3.1 sorting nexin 31 protein-coding 100041805 Mm.417070 NR_152197 Gm3519 Gm43683 - 5 C1|5 predicted gene 3519 ncRNA 100036249 Gluchos2 - - 11 7.3 cM glucose homeostasis QTL 2 unknown 100124580 Vmn2r-ps121 - - 17|17 A3.2 vomeronasal 2, receptor, pseudogene 121 pseudo 108265 Uba1y-rs3 Ube1y1-rs3 - - ubiquitin-activating enzyme, Chr Y related sequence 3 pseudo 77341 Mm.402964 NR_040483 ENSMUSG00000085447 9530026F06Rik - - 1|1 C2 RIKEN cDNA 9530026F06 gene ncRNA 105242854 XR_881829 Gm38948 Gm45281 - 7 A2|7 predicted gene, 38948 ncRNA 219019 Mm.480303 NM_001177508 ENSMUSG00000094285 Olfr743 GA_x6K02T2PMLR-6243196-6244132|MOR106-14|MOR106-8P|Olfr264|Olfr264-ps1|Olfr265|Olfr265-ps1|Olfr743-ps1 - 14|14 C1 olfactory receptor 743 protein-coding 100043485 Gm4471 - - 17 C|17 predicted gene 4471 pseudo 112163576 C77084 - - - expressed sequence C77084 protein-coding 71740 Mm.263414 NM_027893 ENSMUSG00000006411 Nectin4 1200017F15Rik|Prr4|Pvrl4 - 1|1 H3 nectin cell adhesion molecule 4 protein-coding 319957 Mm.447259 A830061P03Rik - - 10|10 RIKEN cDNA A830061P03 gene protein-coding 320850 9430047L24Rik - - 3|3 RIKEN cDNA 9430047L24 gene protein-coding 72901 2900011F02Rik - - X|X RIKEN cDNA 2900011F02 gene protein-coding 777688 Ighv5-4 Gm16971 - 12|12 F1 immunoglobulin heavy variable 5-4 other 102637335 Gm34174 - - 7|7 predicted gene, 34174 ncRNA 110843 Fzd2-rs2 Fz2-rs2 - - frizzled class receptor 2, related sequence 2 protein-coding 100705 Mm.81793 NM_133904 ENSMUSG00000042010 Acacb AI597064|AW743042|Acc2|Accb - 5|5 F acetyl-Coenzyme A carboxylase beta protein-coding 108167473 Gm45401 - - 7 A1|7 predicted gene 45401 pseudo 110533 Fdpsl2 - - - farnesyl diphosphate synthetase-like 2 protein-coding 73168 Mm.395211 3110027N22Rik - - 2|2 RIKEN cDNA 3110027N22 gene protein-coding 21949 Mm.4664 NM_009403 ENSMUSG00000028362 Tnfsf8 CD153|CD30LG|Cd30l|Tnlg3a - 4 C1|4 34.06 cM tumor necrosis factor (ligand) superfamily, member 8 protein-coding 102632706 Gm30705 - - Y|Y predicted gene, 30705 ncRNA 100041352 Mm.432087 NM_001167578 ENSMUSG00000052469 Tcp10c D17Leh66C|D17Leh66ca|Gm9880|T66C-a|Tcp-10c - 17 8.86 cM|17 A1 t-complex protein 10c protein-coding 330863 Mm.422769 NM_198632 ENSMUSG00000036913 Trim67 D130049O21Rik|TNL - 8|8 E2 tripartite motif-containing 67 protein-coding 100126096 Gm17790 - - Y|Y A1 jumonji C domain-containing histone demethylase 1 homolog D pseudogene pseudo 102637698 XR_377705 Gm34441 - - 6 B3|6 predicted gene, 34441 ncRNA 16491 Mm.30640 NM_008418 ENSMUSG00000047959 Kcna3 Kca1-3|Kv1.3|Mk-3 - 3 F2.3|3 46.59 cM potassium voltage-gated channel, shaker-related subfamily, member 3 protein-coding 268354 Mm.51939 NM_182807 ENSMUSG00000044071 Fam19a2 6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2 - 10|10 D2 family with sequence similarity 19, member A2 protein-coding 19945 Rpl29-ps1 Rpl43-ps1 - 3|3 H3 ribosomal protein L29, pseudogene 1 pseudo 320360 Mm.71007 NM_178780 ENSMUSG00000048330 Ric3 E130307J04Rik - 7|7 E3 RIC3 acetylcholine receptor chaperone protein-coding 269019 Mm.150401 NM_178749 ENSMUSG00000039954 Stk32a A930015B13Rik|YANK1 - 18|18 B3 serine/threonine kinase 32A protein-coding 102635272 XR_385568 Gm32655 - - 17 B1|17 predicted gene, 32655 ncRNA 229782 Mm.190758 NM_144902 ENSMUSG00000027957 Slc35a3 2310050P13Rik - 3|3 G1 solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 protein-coding 67087 Mm.299735 NM_023465 ENSMUSG00000028988 Ctnnbip1 1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat - 4|4 E2 catenin beta interacting protein 1 protein-coding 620050 Igkv12-38 Gm16690 - 6|6 C1 immunoglobulin kappa chain variable 12-38 other 105245143 XR_871622 Gm40636 - - 10 B2|10 predicted gene, 40636 ncRNA 62909 D10Mit203 - - 10 57.03 cM DNA segment, Chr 10, Massachusetts Institute of Technology 203 unknown 102633466 XR_378330 Gm31284 - - 7 D3|7 predicted gene, 31284 ncRNA 668710 Gm9312 EG668710 - 12|12 A1.3 predicted gene 9312 pseudo 692138 Igkv13-71-1 gd33r - 6|6 C1 immunoglobulin kappa chain variable 13-71-1 pseudo 100036050 Etmr - - - ethanol metabolism rate unknown 102466219 NR_106028 ENSMUSG00000104914 Mir7061 mmu-mir-7061 - 7|7 F3 microRNA 7061 ncRNA 225600 Mm.391106 NM_146086 ENSMUSG00000024575 Pde6a Pdea|nmf282 - 18 E1|18 34.41 cM phosphodiesterase 6A, cGMP-specific, rod, alpha protein-coding 17257 Mm.131408 NM_010788 ENSMUSG00000031393 Mecp2 1500041B07Rik|D630021H01Rik|Mbd5|WBP10 - X A7.3|X 37.63 cM methyl CpG binding protein 2 protein-coding 52884 Mgll-rs2 D13Bwg0938e - 6 39.59 cM monoglyceride lipase, related sequence 2 unknown 14619 Mm.390683 NM_008125 ENSMUSG00000046352 Gjb2 AI325222|Cnx26|Cx26|Gjb-2 - 14 C3|14 30.1 cM gap junction protein, beta 2 protein-coding 404252 Mrgprb7-ps MrgB7 - 7|7 B4 MAS-related GPR, member B7, pseudogene pseudo 21429 Mm.2845 NM_011551 ENSMUSG00000020923 Ubtf A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1 - 11|11 D upstream binding transcription factor, RNA polymerase I protein-coding 109280023 LOC109280023 Mm178 - - VISTA enhancer mm178 biological-region 20602 Mm.278646 NM_011424 ENSMUSG00000029478 Ncor2 N-CoR|SMRT|SMRTe - 5|5 G1.1 nuclear receptor co-repressor 2 protein-coding 624439 Mm.326965 NM_001281523 ENSMUSG00000097972 Scgb2b15 Abpb15|EG624439|Gm6504 - 7|7 B1 secretoglobin, family 2B, member 15 protein-coding 100040209 H2af-ps Gm15652 - 5|5 B3 H2A histone family, pseudogene pseudo 100504412 Mm.398212 NR_130644 ENSMUSG00000085837 Kcnmb4os2 4933400F03Rik - 10|10 D2 potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 2 ncRNA 100042442 Gm10105 - - 9|9 A4 high mobility group nucleosomal binding domain 2 pseudogene pseudo 27779 57K16F - - - DNA segment, 57K16F (Research Genetics) unknown 102637744 XR_384823 Gm34476 - - 16 B2|16 predicted gene, 34476 ncRNA 105245291 XR_872047 Gm40767 - - 10 D2|10 predicted gene, 40767 ncRNA 102633842 Gm31571 - - Y|Y predicted gene, 31571 protein-coding 628412 Gm6877 EG628412 - 8|8 A3 GTP-binding protein 10 (putative) pseudogene pseudo 23906 Hnrpfl - - - heterogeneous nuclear ribonucleoprotein F like protein-coding 60893 D8Mit25 - - 8 32.3 cM DNA segment, Chr 8, Massachusetts Institute of Technology 25 unknown 547154 Mm.327545 NM_001085537 ENSMUSG00000100448 H2al1k Gm14501 - X A1.1|X H2A histone family member L1K protein-coding 105246589 Gm41859 - - 19|19 predicted gene, 41859 ncRNA 100124333 Traj54 Gm17479 - 14|14 C2 T cell receptor alpha joining 54 pseudo 51880 D2Ertd239e - - 2 94.71 cM DNA segment, Chr 2, ERATO Doi 239, expressed unknown 114063 Axtex - - - Anxiety-exploratory behavior unknown 59125 Mm.143817 NM_021605 ENSMUSG00000026393 Nek7 2810460C19Rik|AU020186 - 1 E4|1 60.82 cM NIMA (never in mitosis gene a)-related expressed kinase 7 protein-coding 100034946 Igf1sl2 Igf1s2|Igfsl2 - 10 47.06 cM IGF-1 serum levels 2 unknown 102635876 XR_389636 Gm33102 - - 3 A3|3 predicted gene, 33102 ncRNA 100504224 Gm20121 - - 5|5 43.56 cM rho GTPase-activating protein 11A-like pseudo 214580 Mm.272948 NM_177609 ENSMUSG00000063179 Pstk 5430423O14Rik|5730458D16Rik|Gm1099|R75284 - 7|7 F3 phosphoseryl-tRNA kinase protein-coding 21440 tclTuw12 tcl-Tuw12 - - t-complex lethal Tuw12 unknown 226751 Mm.259655 NM_001033285 ENSMUSG00000026490 Cdc42bpa A930014J19Rik|DMPK-like - 1|1 H4 CDC42 binding protein kinase alpha protein-coding 100040897 Gm3029 - - 14 A1|14 predicted gene 3029 pseudo 100416542 Gm18156 - - 11|11 E2 ribosomal protein L18 pseudogene pseudo 111483 Grr2 - - - growth and reproductive region 2 other 27566 D5Buc36 556B6.T7 - - DNA segment, Chr 5, Bucan 36 unknown 17152 Mm.8149 NM_008547 ENSMUSG00000021363 Mak A930010O05Rik - 13 A3.3|13 20.25 cM male germ cell-associated kinase protein-coding 107966126 Sox10-mcs8 DCHCS-2|MCS8 - - Sox10 multiple-species conserved sequence 8 biological-region 100041500 Gm10146 - - 10|10 C1 LSM7 homolog, U6 small nuclear RNA associated pseudogene pseudo 61819 D2Mit349 - - 2 40.95 cM DNA segment, Chr 2, Massachusetts Institute of Technology 349 unknown 20974 Mm.26032 NM_011522 ENSMUSG00000007021 Syngr3 - - 17|17 A3.3 synaptogyrin 3 protein-coding 108353 Iap2 - - - intracisternal A particle 2 other 21838 Mm.3951 NM_009382 ENSMUSG00000032011 Thy1 CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2 - 9 A5.1|9 24.52 cM thymus cell antigen 1, theta protein-coding 12145 Mm.6246 NM_007551 ENSMUSG00000047880 Cxcr5 Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15 - 9 A5.2|9 24.84 cM chemokine (C-X-C motif) receptor 5 protein-coding 629079 Mm.469869 NM_001104648 ENSMUSG00000090762 Vmn2r56 EG629079 - 7 A1|7 vomeronasal 2, receptor 56 protein-coding 62363 D13Mit302 - - 13 3.25 cM DNA Segment, Chr 13 Massachusetts Institute of Technology 302 unknown 102631900 Gm30118 - - 10|10 predicted gene, 30118 pseudo 71248 Mm.158634 NM_001357856 ENSMUSG00000042525 4933428M09Rik - - X|X F1 RIKEN cDNA 4933428M09 gene protein-coding 399592 Mm.441078 8430406M14Rik - - - RIKEN cDNA 8430406M14 gene protein-coding 102640157 Gm36292 - - 12|12 predicted gene, 36292 ncRNA 102640596 Gm36623 - - 17|17 predicted gene, 36623 ncRNA 75067 Mm.416933 NR_152797 ENSMUSG00000112899 4930521O17Rik - - 10|10 B5.1 RIKEN cDNA 4930521O17 gene ncRNA 100043840 Gm14150 - - 2|2 G3 tubulin, alpha 1B pseudogene pseudo 71177 Mm.271774 NM_138757 ENSMUSG00000040250 Ints13 4933424B01Rik|Asun|Spata30 - 6|6 G3 integrator complex subunit 13 protein-coding 102635970 XR_382778 Gm33171 - - 13 D1|13 predicted gene, 33171 ncRNA 102632861 Gm30824 - - 10|10 predicted gene, 30824 ncRNA 100310873 Gm9821 - - - predicted gene 9821 protein-coding 109600 Ve - - - velvet coat unknown 75900 Mm.402046 4930566D17Rik - - 8|8 RIKEN cDNA 4930566D17 gene ncRNA 19593 Rb(6.15)1Ald Rb1Ald - - Robertsonian translocation, Chr 6 and 15, Leonard 1 other 207128 Rwhs - - - retinal white spots protein-coding 18703 Mm.276414 NM_011082 ENSMUSG00000026417 Pigr - - 1 E4|1 56.89 cM polymeric immunoglobulin receptor protein-coding 52231 Mm.259326 NM_026187 ENSMUSG00000026199 Ankzf1 1300008P06Rik|2810025E10Rik|D1Ertd161e - 1 C4|1 38.62 cM ankyrin repeat and zinc finger domain containing 1 protein-coding 66884 Mm.271997 NM_025825 ENSMUSG00000018481 Appbp2 1300003O07Rik|AI465480|PAT1 - 11|11 C amyloid beta precursor protein (cytoplasmic tail) binding protein 2 protein-coding 100043510 Gm4487 - - 14|14 E4 predicted gene 4487 pseudo 27916 D16Ium49 - - 16 45.36 cM DNA segment, Chr 16, Indiana University Medical 49 unknown 105244371 XR_867023 Gm39993 - - 2 H3|2 predicted gene, 39993 ncRNA 111749 Igh-VGAM3.8 - - - immunoglobulin heavy chain (VGAM3.8 family) other 666023 Mm.396234 Gm7894 EG666023 - 16|16 C4 predicted gene 7894 unknown 108556 Tkns1 - - - translocation-associated element in NS-1 plasmacytoma other 67527 LOC67527 - - 18|18 B1 murine leukemia retrovirus other 108168055 XM_017315660 LOC108168055 - - 13 B2 zinc finger protein 120-like protein-coding 102639345 Mm.24242 XR_874822 Gm35679 - - 14 D3|14 predicted gene, 35679 ncRNA 100418181 Gm19058 - - 1|1 H5 proteasome (prosome, macropain) subunit, beta type 4 pseudogene pseudo 102638435 XM_017313632 LOC102638435 - - 1 C5 nuclear body protein SP140-like protein protein-coding 332359 Mm.329642 NM_198634 ENSMUSG00000044390 Tigd3 - - 19|19 A tigger transposable element derived 3 protein-coding 105244295 Gm39934 - - 2|2 predicted gene, 39934 ncRNA 71056 Mm.56332 NR_045506 ENSMUSG00000086209 4933405E24Rik - - 11 B1.3|11 RIKEN cDNA 4933405E24 gene ncRNA 28210 D0Nrs1 Q11 - - DNA segment, National Institute of Radiological Sciences, Japan-1 unknown 100504427 Gm13404 - - 2|2 22.68 cM predicted gene 13404 ncRNA 432864 Gm5461 EG432864 - 14 D1|14 predicted gene 5461 pseudo 19820 Mm.427762 NM_011276 ENSMUSG00000056537 Rlim AL022832|AW743871|Ha1r|Rlim1|Rnf12 - X 46.42 cM|X D ring finger protein, LIM domain interacting protein-coding 105242665 Gm38818 - - 6|6 predicted gene, 38818 ncRNA 102639486 XR_391682 Gm35790 - - X A5|X predicted gene, 35790 ncRNA 77673 Mm.99530 NM_183124 ENSMUSG00000067773 Defb41 9230102D03Rik|BD-17|Bd-41|Defb16|Defb17|Gm15386 - 1|1 A3 defensin beta 41 protein-coding 666297 Gm8031 EG666297 - 9|9 A4 high mobility group box 2 pseudogene pseudo 234889 Mm.91240 NM_001033322 ENSMUSG00000041624 Gucy1a2 6330407I18Rik|A230060L24Rik - 9|9 A1 guanylate cyclase 1, soluble, alpha 2 protein-coding 102636075 XR_378423 Gm33247 - - 7 F1|7 predicted gene, 33247 ncRNA 102633922 Gm28420 - - Y|Y predicted gene 28420 ncRNA 13929 Mm.211850 NM_025275 ENSMUSG00000020610 Amz2 AA408420|ESTM12|X83328 - 11 E1|11 71.89 cM archaelysin family metallopeptidase 2 protein-coding 27935 D3Nds1 - - - DNA segment, Chr 3, Nuffield Department of Surgery 1 unknown 269202 Mm.233877 BC019684 - - 1|1 C2 cDNA sequence BC019684 protein-coding 108228 Hmgb1-rs21 Hmg1-rs21 - - high mobility group box 1, related sequence 21 pseudo 61671 D6Mit300 - - 6 58.07 cM DNA segment, Chr 6, Massachusetts Institute of Technology 300 unknown 435845 Mm.359654 NM_001030297 ENSMUSG00000061184 Tmprss11c Tmprss13 - 5|5 E1 transmembrane protease, serine 11c protein-coding 230971 Mm.275216 NM_172273 ENSMUSG00000057751 Megf6 2600001P17Rik|Egfl3 - 4|4 E2 multiple EGF-like-domains 6 protein-coding 16993 Mm.271071 NM_008517 ENSMUSG00000015889 Lta4h - - 10|10 C2 leukotriene A4 hydrolase protein-coding 100034964 Mdmsc4 - - - modifier of muscularity 4 unknown 723818 NR_029777 ENSMUSG00000065435 Mir135b Mirn135b|mir-135b - 1|1 E4 microRNA 135b ncRNA 258586 Mm.223113 NM_146593 ENSMUSG00000075158 Olfr1111 MOR181-2 - 2|2 D olfactory receptor 1111 protein-coding 22032 Mm.390418 NM_009423 ENSMUSG00000017386 Traf4 A530032M13Rik|CART1|msp2 - 11|11 B5 TNF receptor associated factor 4 protein-coding 68226 Mm.252132 NM_026626 ENSMUSG00000026495 Efcab2 1700073K01Rik|D830011E08Rik - 1|1 H4 EF-hand calcium binding domain 2 protein-coding 100043215 Rpl36-ps3 Gm10168 - 12|12 A1.1 ribosomal protein L36, pseudogene 3 pseudo 100775172 Ighv8-13 Gm16810 - 12 F2|12 62.59 cM immunoglobulin heavy variable 8-13 other 12393 Mm.391013 NM_009820 ENSMUSG00000039153 Runx2 AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a - 17 B3|17 21.33 cM runt related transcription factor 2 protein-coding 109332 Mm.27519 NM_133974 ENSMUSG00000035498 Cdcp1 9030022E12Rik|AA409659|E030027H19Rik - 9|9 F4 CUB domain containing protein 1 protein-coding 100125403 Femwf9 - - - femur work to failure 9 unknown 442847 Mm.128292 NR_040658 ENSMUSG00000097076 Platr7 C330046G13Rik - 10 C1|10 pluripotency associated transcript 7 ncRNA 53308 MCA1 - - - DNA segment, MCA1, multiple CA repeat 1 unknown 22419 Mm.321818 NM_009525 ENSMUSG00000030170 Wnt5b AW545702|Wnt-5b - 6 F1|6 56.86 cM wingless-type MMTV integration site family, member 5B protein-coding 72183 Mm.28240 NM_026998 ENSMUSG00000005656 Snx6 2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963 - 12|12 C1 sorting nexin 6 protein-coding 53044 CA7.17 - - - DNA segment, CA7.17 unknown 102637258 XR_382140 Gm34122 - - 13 A3.1|13 predicted gene, 34122 ncRNA 100503781 Gm19891 - - 1|1 63.32 cM 60S ribosomal protein L22-like 1-like pseudo 100861820 Gm21244 - - Y|Y predicted gene, 21244 protein-coding 319503 Mm.209448 NM_176929 ENSMUSG00000042976 9930038B18Rik - - 12|12 A1.1 RIKEN cDNA 9930038B18 gene unknown 18114 Mm.38344 NM_010925 ENSMUSG00000061032 Rrp1 AL033305|AL033306|AU018604|NNP-1|Nnp1 - 10 C1|10 39.72 cM ribosomal RNA processing 1 homolog (S. cerevisiae) protein-coding 52320 D6Ertd469e - - 6 77.56 cM DNA segment, Chr 6, ERATO Doi 469, expressed unknown 492922 Pcir1 - - 1 68.38 cM periosteal circumference 1 unknown 110120556 LOC110120556 - - - VISTA enhancer mm1105 biological-region 668968 Gm9428 - - X|X A1.1 predicted gene 9428 pseudo 620837 Gm6184 EG620837 - X|X D ring finger protein 26 pseudogene pseudo 20280 Mm.379011 NM_011327 ENSMUSG00000028603 Scp2 AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP - 4 C7|4 50.2 cM sterol carrier protein 2, liver protein-coding 100041257 Gm11371 - - 13|13 A3.2 predicted gene 11371 pseudo 108168817 XR_001783555 Gm46777 - - 2 H3|2 predicted gene, 46777 ncRNA 101055849 Mm.446877 LOC101055849 - - - uncharacterized LOC101055849 protein-coding 102637991 XR_872995 Gm34667 - - 12 F1|12 predicted gene, 34667 ncRNA 791297 Mm.483417 Gm9966 - - - predicted gene 9966 unknown 100417806 Gm18839 - - 6|6 C1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 pseudogene pseudo 20759 Mm.261596 NM_011471 ENSMUSG00000055030 Sprr2e - - 3 F1|3 40.14 cM small proline-rich protein 2E protein-coding 100312549 Vmn1r-ps120 Gm11317 - 13|13 A3.1 vomeronasal 1 receptor, pseudogene 120 pseudo 668057 Gm8952 EG668057 - 6|6 C1 spermine synthase pseudogene pseudo 77937 Mm.17604 A930005C09Rik - - 9|9 RIKEN cDNA A930005C09 gene protein-coding 108167371 XM_017315685 Gm45966 - - 13 B3|13 predicted gene, 45966 protein-coding 102639436 XR_375198 Gm35750 - - 2 H3|2 predicted gene, 35750 ncRNA 100417539 Gm18674 - - 7|7 D2 proliferating cell nuclear antigen pseudogene pseudo 100041947 Vmn2r-ps108 - - 13|13 B3 vomeronasal 2, receptor, pseudogene 108 pseudo 111807 Iapls2-16 - - - intracisternal A particle, lymphocyte specific 2-16 other 66998 Mm.270632 NM_080554 ENSMUSG00000026869 Psmd5 1500032A03Rik|AW475925|S5b|W91691|mKIAA0072 - 2|2 B proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 protein-coding 102633538 Gm31341 - - 15|15 predicted gene, 31341 ncRNA 100417684 Gm18764 - - 18|18 A1 apurinic/apyrimidinic endonuclease 1 pseudogene pseudo 213436 Mm.85581 NM_199468 ENSMUSG00000047686 Rtl3 D430021I08Rik|Gm375|Mar3|Mart3|ZHC5|Zcchc5 - X|X D retrotransposon Gag like 3 protein-coding 665709 Gm11550 - - 3|3 B glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102637146 XR_378998 Gm34030 Gm45357 - 8 B2|8 predicted gene, 34030 ncRNA 240895 Gm4954 EG240895 - 1|1 H2.3 SNW domain containing 1 pseudogene pseudo 107482 Ack ack|acm - - anti-Corynebacterium kutscheri unknown 232987 Mm.22849 NM_172148 ENSMUSG00000063439 B9d2 stumpy - 7|7 A3 B9 protein domain 2 protein-coding 333473 Mm.327378 NM_001009549 ENSMUSG00000059334 Zfp36l3 AY661338 - X|X A5 zinc finger protein 36, C3H type-like 3 protein-coding 435916 Mm.469874 NM_001104638 ENSMUSG00000091620 Vmn2r23 EG435916 - 6|6 F2 vomeronasal 2, receptor 23 protein-coding 102639913 Gm36113 - - 8 A3|8 predicted gene, 36113 pseudo 67945 Mm.290786 NM_018860 ENSMUSG00000093674 Rpl41 1810055P16Rik|2210411K19Rik - 10|10 D3 ribosomal protein L41 protein-coding 620771 Gm16060 - - 3 H1|3 predicted pseudogene 16060 protein-coding 100043143 Mm.207552 XR_878580 Gm4258 - - 1 E4|1 predicted gene 4258 unknown 102467627 n-TVtac3 n-Tv23 - X F4|X nuclear encoded tRNA valine 3 (anticodon TAC) tRNA 627009 Mm.473686 NM_001115077 ENSMUSG00000073721 Pramef20 EG627009|Gm13125 - 4 E1|4 PRAME family member 20 protein-coding 62263 D18Mit91 - - 18 29.67 cM DNA segment, Chr 18, Massachusetts Institute of Technology 91 unknown 102633000 Mm.443436 NR_151466 2310043M15Rik - - 16|16 C4 RIKEN cDNA 2310043M15 gene ncRNA 109947 Zfp134 - - 7|7 zinc finger protein 134 protein-coding 14586 Mm.32619 NM_008115 ENSMUSG00000022103 Gfra2 - - 14|14 D2 glial cell line derived neurotrophic factor family receptor alpha 2 protein-coding 100503127 Gm19566 - - 5 E5|5 51.07 cM 60S ribosomal protein L15-like pseudo 102635281 XR_390860 Gm32662 - - 4 D3|4 predicted gene, 32662 ncRNA 100504461 Mm.383841 XR_381430 5430401H09Rik AW987716 - 12|12 A3 RIKEN cDNA 5430401H09 gene unknown 100043152 Gm4266 - - 14 D3|14 predicted gene 4266 pseudo 75480 Mm.440434 NM_029305 ENSMUSG00000038523 1700003F12Rik - - 2|2 H1 RIKEN cDNA 1700003F12 gene protein-coding 105246827 Mm.436830 Gm42051 - - 8|8 predicted gene, 42051 ncRNA 102635198 XR_379372 Gm38476 - - 9 A5.3|9 predicted gene, 38476 ncRNA 52837 Mm.264096 NM_029148 ENSMUSG00000034723 Tmx4 2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162 - 2 F2|2 65.66 cM thioredoxin-related transmembrane protein 4 protein-coding 61277 D2Mit245 - - 2 43.35 cM DNA segment, Chr 2, Massachusetts Institute of Technology 245 unknown 224752 Obox3-ps8 EG224752|Gm4830 - 17|17 B1 oocyte specific homeobox 3, pseudogene 8 pseudo 319472 Mm.226434 NR_015589 ENSMUSG00000073154 9330158H04Rik - - 6|6 B1 RIKEN cDNA 9330158H04 gene ncRNA 74454 Mm.410794 NR_045810 ENSMUSG00000097407 4933408J17Rik - - 10|10 C2 RIKEN cDNA 4933408J17 gene ncRNA 100034972 Bpq11 - - - blood pressure QTL 11 unknown 16337 Mm.268003 NM_010568 ENSMUSG00000005534 Insr 4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B - 8 A1.1|8 1.82 cM insulin receptor protein-coding 71699 Mm.272633 NM_027868 ENSMUSG00000030089 Slc41a3 1010001P06Rik|AI480742|SLC41A1-L2 - 6|6 D1 solute carrier family 41, member 3 protein-coding 108168882 XR_001783922 Gm46814 - - 3 F2.1|3 predicted gene, 46814 ncRNA 102636886 XR_389786 Gm33836 - - 5 A3|5 predicted gene, 33836 ncRNA 66256 Mm.7091 NM_025448 ENSMUSG00000041355 Ssr2 1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta - 3|3 F1 signal sequence receptor, beta protein-coding 67894 Mm.26148 NM_026437 ENSMUSG00000024993 Fam45a 1810055E12Rik - 19|19 D3 family with sequence similarity 45, member A protein-coding 105243983 XR_865657 Gm39682 - - 1 G3|1 predicted gene, 39682 ncRNA 53755 D11Hrb1 D11Ham1 - - DNA segment, Chr 11, K. Harbers 1 unknown 692167 Igkv15-101-1 - - 6|6 C1 immunoglobulin kappa chain variable 15-101-1 pseudo 171032 Chab1 - - 2 62.63 cM cholesterol absorption 1 unknown 107071 Mm.29627 NM_134139 ENSMUSG00000042729 Wdr74 5730436H21Rik|AA407588 - 19|19 A WD repeat domain 74 protein-coding 56622 Mm.117130 NM_020330 ENSMUSG00000008438 Adam21 Adam31 - 12 D1|12 37.79 cM a disintegrin and metallopeptidase domain 21 protein-coding 17835 Mm.422976 NR_027619 ENSMUSG00000101397 Mug-ps1 Mug3 - 6|6 F1 murinoglobulin, pseudogene 1 pseudo 77843 Rapgef4it B230107M02Rik - 2|2 Rap guanine nucleotide exchange factor (GEF) 4, intronic transcript protein-coding 668501 Mm.286296 NM_177739 ENSMUSG00000044452 Zfp507 1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084 - 7|7 B2 zinc finger protein 507 protein-coding 17878 Mm.11 NM_008657 ENSMUSG00000035923 Myf6 MRF4|bHLHc4|herculin - 10 D1|10 55.96 cM myogenic factor 6 protein-coding 53795 D2H11S149 D11S149h - - DNA segment, Chr 2, human D11S149 unknown 105246330 XR_877021 Gm41631 - - 17 E4|17 predicted gene, 41631 ncRNA 102634211 Mm.406979 XR_374895 Gm13990 - - 2 E5|2 59.03 cM predicted gene 13990 ncRNA 258231 Mm.377272 NM_207132 ENSMUSG00000096320 Olfr1471 GA_x5J8B7W6KF8-5605544-5605301|MOR202-38|MOR202-47_p - 19|19 A olfactory receptor 1471 protein-coding 108168618 XM_017318826 LOC108168618 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 16621 Mm.482691 NM_008455 ENSMUSG00000109764 Klkb1 APS|Kal-3|Kal3|Klk3|PSA - 8 B1.1|8 25.17 cM kallikrein B, plasma 1 protein-coding 105245773 XR_874680 Gm41169 - - 14 D1|14 predicted gene, 41169 ncRNA 66409 Mm.28291 NM_025546 ENSMUSG00000005846 Rsl1d1 2410005K20Rik|C76439|pBK1 - 16|16 A1 ribosomal L1 domain containing 1 protein-coding 105247132 XR_881273 Gm42287 - - 4 B1|4 predicted gene, 42287 ncRNA 73652 Mm.441297 NR_040257 ENSMUSG00000087380 2210408F21Rik - - 6|6 A3.3 RIKEN cDNA 2210408F21 gene ncRNA 767812 AA474408 - - 7 E3-F1|7 expressed sequence AA474408 unknown 100035546 Fcsa3 - - 10 55.73 cM femoral cross-sectional area 3 unknown 102467353 n-TKctt30 n-Tk30 - 19 A|19 nuclear encoded tRNA lysine 30 (anticodon TTT) tRNA 19845 NR_024200 ENSMUSG00000093834 Rnu1b2 pU1.2 - 3 F2.1|3 41.79 cM U1b2 small nuclear RNA snRNA 218203 Mm.212855 NM_153789 ENSMUSG00000038175 Mylip 9430057C20Rik|Mir - 13|13 A5 myosin regulatory light chain interacting protein protein-coding 108169067 XR_001784948 Gm46921 - - 5 F|5 predicted gene, 46921 ncRNA 231876 Mm.288726 NM_001081109 ENSMUSG00000038970 Lmtk2 2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk - 5|5 G2 lemur tyrosine kinase 2 protein-coding 53887 Ear-ps1 mR6p - 14|14 C1 eosinophil-associated, ribonuclease A family, pseudogene 1 pseudo 100416245 Gm17999 - - 8|8 C2 ribosomal protein 10 pseudogene pseudo 18452 Mm.3705 NM_011031 ENSMUSG00000018906 P4ha2 AA407196|C76437|P4hl - 11 B1.3|11 32.13 cM procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide protein-coding 102634288 XR_877637 Gm31909 - - 18 E4|18 predicted gene, 31909 ncRNA 12114 bh - - - brain hernia unknown 100502814 Zfp989 Gm13150 - 4|4 78.41 cM zinc finger protein 989 protein-coding 102633387 XR_383093 Gm31222 - - 14 A1|14 predicted gene, 31222 ncRNA 237038 Mm.67938 NM_172203 ENSMUSG00000031257 Nox1 GP91-2|MOX1|NOH-1|NOH1|NOX1a|NOX1alpha|Nox-1 - X 55.69 cM|X E3 NADPH oxidase 1 protein-coding 100040313 Mm.301781 Gm12503 - - 4|4 B1 predicted gene 12503 ncRNA 62010 D6Mit373 - - 6 77.7 cM DNA segment, Chr 6, Massachusetts Institute of Technology 373 unknown 100035999 Wtlr3 - - - weight loss response 3 unknown 56629 Mm.25853 NM_019957 ENSMUSG00000028185 Dnase2b AI526873|Dlad|DnaseIIb - 3|3 H2 deoxyribonuclease II beta protein-coding 102635540 XR_375905 Gm32848 - - 3 F2.2|3 predicted gene, 32848 ncRNA 100036097 Vacq5 - - 13 14.44 cM voluntary alcohol consumption QTL 5 unknown 73720 Mm.36816 NM_028623 ENSMUSG00000024846 Cst6 1110017E11Rik|N28197|ichq - 19 A|19 4.3 cM cystatin E/M protein-coding 102633651 XR_001785207 Gm14532 - - 6 A3.3|6 12.57 cM predicted gene 14532 ncRNA 13242 Mm.436573 Defa8 Defa31|Defcr8 - 8|8 defensin, alpha, 8 protein-coding 242602 Mm.235591 NM_183182 ENSMUSG00000054362 Lexm - - 4|4 C7 lymphocyte expansion molecule protein-coding 102632901 Mm.99385 XR_001783928 Gm10685 - - 3|3 F2.1 predicted gene 10685 ncRNA 19562 Rb(5.10)3Nam Rb3Nam - - Robertsonian translocation, Chr 5 and 10, Namur 3 other 112373 Siafq1 Fsia1 - - stress induced analgesia, female specific, QTL1 unknown 114744 Bwob - - - body weight of obese males unknown 75838 Mm.257952 4930560O18Rik - - 7|7 RIKEN cDNA 4930560O18 gene protein-coding 100043622 Gm14383 - - 2|2 E5 predicted gene 14383 pseudo 231549 Mm.23837 NM_178701 ENSMUSG00000046079 Lrrc8d 2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5 - 5|5 E5 leucine rich repeat containing 8D protein-coding 72965 2900064B18Rik - - 16|16 RIKEN cDNA 2900064B18 gene protein-coding 621824 Gm6263 EG621824 - 13|13 C1 integrin linked kinase pseudogene pseudo 110965 Ela1-ps Ela-1ps - - elastase 1, pseudogene pseudo 19536 Rb(4.10)8Tu Rb8Tu - - Robertsonian translocation, Chr 4 and 10, Tubingen 8 other 102632992 XR_388642 Gm30927 - - 11 B1.3|11 predicted gene, 30927 ncRNA 102633436 Mm.411637 NR_151546 Gm11217 - - 4 C1|4 34.06 cM predicted gene 11217 ncRNA 667114 XR_385201 Gm8465 EG667114 - 17|17 A1 predicted gene 8465 pseudo 105242652 XR_869065 Gm38807 - - 6 B2.3|6 predicted gene, 38807 ncRNA 102632084 Gm30251 - - 16|16 predicted gene, 30251 pseudo 110077 Htf9 - - - HpaII tiny fragments locus 9 protein-coding 105246024 XR_875594 Gm41386 - - 15 E3|15 predicted gene, 41386 ncRNA 108362 Mtv25 Mtv-25 - - mammary tumor virus locus 25 other 102639746 XR_386751 Gm29595 - - 19 C3|19 predicted gene 29595 ncRNA 100049597 Fmtq16 - - - femur mechanical trait QTL 16 unknown 236149 Mm.207060 NM_146232 ENSMUSG00000053303 Slc22a26 - - 19|19 A solute carrier family 22 (organic cation transporter), member 26 protein-coding 64685 Mm.7491 NM_019401 ENSMUSG00000026946 Nmi - - 2|2 C1.1 N-myc (and STAT) interactor protein-coding 102641157 Gm38538 - - 12 A1.3|12 predicted gene, 38538 pseudo 246779 Mm.222632 NM_145636 ENSMUSG00000044701 Il27 IL-27|IL-27p28|Il30|p28 - 7|7 F3 interleukin 27 protein-coding 27216 Mm.377120 NM_013728 ENSMUSG00000075212 Olfr154 912-93|MOR175-1|OR93|Olfr4-3 - 2|2 D olfactory receptor 154 protein-coding 105246711 XR_001779868 Gm41955 - - 1 E4|1 predicted gene, 41955 ncRNA 70799 Mm.30857 NM_027556 ENSMUSG00000024542 Cep192 4631422C13Rik|D430014P18Rik - 18|18 E1 centrosomal protein 192 protein-coding 665075 Mm.425863 Gm7480 EG665075 - 14|14 A3 predicted gene 7480 unknown 13222 Mm.422993 NM_007847 Defa-rs2 CRS4C|CRS4C-1|CRS4C1d|CRS4C1e|CRS4C1f|CRS4C1g|CRS4C1h|CRS4C1i|CRS4C1j|Defcr-rs2|Defcr-rs3 - - defensin, alpha, related sequence 2 protein-coding 100416309 Gm18027 - - 12|12 C1 predicted gene, 18027 pseudo 75273 Mm.340601 NM_029231 ENSMUSG00000018921 Pelp1 4930563C04Rik|MNAR - 11|11 B3 proline, glutamic acid and leucine rich protein 1 protein-coding 22717 Mm.379046 NM_011762 ENSMUSG00000078779 Zfp59 Mfg-2|Mfg2 - 7|7 A3 zinc finger protein 59 protein-coding 665769 Mm.290602 NR_108053 ENSMUSG00000093867 Gsdmcl2 4921501E01Rik|4930453O09Rik|Gm7779 - 15 D1|15 gasdermin C-like 2 pseudo 380709 Mm.340910 NM_001045531 ENSMUSG00000112920 Spata22 Gm882 - 11|11 B4 spermatogenesis associated 22 protein-coding 547427 Trav18 Gm13894|Gm29 - 14 C2|14 T cell receptor alpha variable 18 other 74032 Mm.296302 NM_028725 ENSMUSG00000034308 Sdr42e1 4632417N05Rik|AI117603 - 8|8 E1 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 62235 D17Mit52 - - 17 19.74 cM DNA segment, Chr 17, Massachusetts Institute of Technology 52 unknown 19516 Rb(2.6)4Iem Rb4Iem - - Robertsonian translocation, Chr 2 and 6, Inst of Experimental Medicine Leningrad other 72129 Mm.29536 NM_023651 ENSMUSG00000020283 Pex13 2610008O20Rik - 11|11 A3.2 peroxisomal biogenesis factor 13 protein-coding 58198 Mm.214361 NM_021390 ENSMUSG00000031665 Sall1 Msal-3 - 8|8 C3 spalt like transcription factor 1 protein-coding 21681 Mm.1886 NM_011568 ENSMUSG00000025134 Alyref Aly|Ref1|Ref1-I|Refbp1|Tho4|Thoc4 - 11|11 E2 Aly/REF export factor protein-coding 113857 Mm.377154 NM_053230 ENSMUSG00000094586 Vmn1r41 V1ra12|V1rb9 - 6|6 D1 vomeronasal 1 receptor 41 protein-coding 61130 D5Mit404 - - 5 50.45 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 404 unknown 107726 Rv3 Rv-3 - - Rauscher leukemia virus susceptibility 3 unknown 100271841 Mm.438007 NR_027289 ENSMUSG00000010492 Uckl1os Gm16119 - 2 H4|2 103.67 cM uridine-cytidine kinase 1-like 1, opposite strand ncRNA 100039308 Gm2150 - - 15|15 A1 beta galactoside alpha 2,6 sialyltransferase 1 pseudogene pseudo 107171 AI428314 - - - expressed sequence AI428314 unknown 17216 Mm.16711 NM_008564 ENSMUSG00000002870 Mcm2 AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030 - 6|6 D1 minichromosome maintenance complex component 2 protein-coding 102634999 LOC102634999 - - X F4 protein Hikeshi pseudogene pseudo 100043194 Mm.457986 NM_009286 ENSMUSG00000070811 Sult2a2 C730007P19Rik|ST|ST2A2|Sth2|mSTa2 - 7|7 A1 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2 protein-coding 105242800 XR_001785389 ENSMUSG00000086239 Gm14329 - - 6 G1|6 66.38 cM predicted gene 14329 ncRNA 114726 Skull18 E12.2|L12.2|QTL-S12.2 - 12 44.05 cM skull morphology 18 unknown 269209 Mm.310974 NM_175031 ENSMUSG00000033276 Stk36 1700112N14Rik|B930045J24|FU|Fused|mKIAA1278 - 1|1 C3 serine/threonine kinase 36 protein-coding 77244 9430012M22Rik - - 3|3 RIKEN cDNA 9430012M22 gene protein-coding 104391 Rasl2-1 - - - RAS-like, family 2, locus 1 protein-coding 114286 Manh19 QTL-SH13.1 - - mandible shape 19 unknown 102633668 XR_386193 Gm31438 - - 18 B3|18 predicted gene, 31438 ncRNA 14957 Mm.247046 NM_145713 ENSMUSG00000052565 Hist1h1d H1.3|H1D|H1f3|H1s-4 - 13|13 A3.1 histone cluster 1, H1d protein-coding 111714 Mpmv27 Mpmv-27 - - modified polytropic murine leukemia virus 27 other 69629 Mm.250542 NR_045337 ENSMUSG00000100550 2310039L15Rik A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle - 10|10 C2 RIKEN cDNA 2310039L15 gene ncRNA 62501 D10Mit161 - - 10 45.36 cM DNA segment, Chr 10, Massachusetts Institute of Technology 161 unknown 110390 Mgll-rs1 D3Bwg0938e|Mgll-rs - - monoglyceride lipase, related sequence 1 protein-coding 102595 Mm.247303 NM_153119 ENSMUSG00000050721 Plekho2 AI840980|Plekhq1 - 9|9 C pleckstrin homology domain containing, family O member 2 protein-coding 100035380 Raml2 - - 3 56.89 cM radiation induced acute myeloid leukemia 2 unknown 17534 Mm.235616 NM_008626 ENSMUSG00000020695 Mrc2 Endo180|mKIAA0709|uPARAP - 11|11 E1 mannose receptor, C type 2 protein-coding 100035323 Fatpad6 - - - fat pad 6 unknown 99425 AW742525 - - - expressed sequence AW742525 unknown 61254 D2Mit132 - - 2 58.31 cM DNA segment, Chr 2, Massachusetts Institute of Technology 132 unknown 66966 Mm.235030 NM_025873 ENSMUSG00000028653 Trit1 2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5 - 4|4 D2.2 tRNA isopentenyltransferase 1 protein-coding 632287 Gm7084 - - 14 A2|14 predicted gene 7084 pseudo 19692 Mm.142731 NM_009042 ENSMUSG00000059654 Reg1 PSP|PTP - 6 C3|6 34.77 cM regenerating islet-derived 1 protein-coding 105246298 Gm41602 - - 17|17 predicted gene, 41602 ncRNA 100862099 Gm21476 - - Y|Y predicted gene, 21476 protein-coding 21152 T(2;8)36Ad T36Ad - - reciprocal translocation, Chr 2 and 8, Adler 36 other 260413 Fubi1 - - 2 59.32 cM failure of ureteric bud invasion 1 unknown 100885834 NR_049195 ENSMUSG00000093746 Mir5622 Gm24421|mmu-mir-5622 - 2|2 H1 microRNA 5622 ncRNA 105244451 XR_867322 Gm40057 - - 3 D|3 predicted gene, 40057 ncRNA 236831 Gm4909 EG236831 - X A6|X predicted gene 4909 pseudo 102639935 XR_381724 Gm36132 - - 12 C3|12 predicted gene, 36132 ncRNA 97455 Mm.136496 C78859 - - - expressed sequence C78859 protein-coding 109280012 LOC109280012 Mm107 - - VISTA enhancer mm107 biological-region 723911 NR_030268 ENSMUSG00000065413 Mir367 Mirn367|mir-367|mmu-mir-367 - 3|3 G2 microRNA 367 ncRNA 114662 Mm.207082 NM_053260 ENSMUSG00000034039 Prss29 D19363|Isp2|mISP-2 - 17 A3.3|17 12.53 cM protease, serine 29 protein-coding 105246120 XR_876105 Gm41461 - - 16 B5|16 predicted gene, 41461 ncRNA 100379607 Mm.464374 NM_001177873 Gm10997 - - 8 B3.1|8 predicted gene 10997 unknown 100041585 Mm.476925 NM_007444 ENSMUSG00000063953 Amd2 AdoMetDC|Amd1|Amd3 - 10|10 B1 S-adenosylmethionine decarboxylase 2 protein-coding 100316698 NR_035469 ENSMUSG00000088860 Mir1947 mir-1947|mmu-mir-1947 - 16 B3|16 23.63 cM microRNA 1947 ncRNA 78806 Mm.374844 NM_030189 ENSMUSG00000028801 Stpg1 4930403G18Rik|4930555I21Rik|Mapo2 - 4|4 D3 sperm tail PG rich repeat containing 1 protein-coding 105244712 XR_872491 Gm40270 - - 12 A1.1|12 predicted gene, 40270 ncRNA 628147 Mm.374080 NM_001362250 Gm2004 100039000 - 2|2 H4 predicted gene 2004 protein-coding 104261 Rig2 Rig-2 - - regulation of Igh-1b 2 protein-coding 100071 AI316872 - - - expressed sequence AI316872 unknown 243083 Mm.106867 NM_178730 ENSMUSG00000048764 Tmprss11f 4631408C20|4732406D01Rik - 5|5 E1 transmembrane protease, serine 11f protein-coding 97592 C77805 - - - expressed sequence C77805 unknown 76573 Mm.45611 NM_029661 ENSMUSG00000009115 Spatc1l 1700022B01Rik|1700027D21Rik|AA062323 - 10|10 C1 spermatogenesis and centriole associated 1 like protein-coding 23818 B446L11T - - - DNA segment B446-L-11-T unknown 105242419 Mm.444285 XR_389377 Gm38691 - - 5 E4|5 predicted gene, 38691 ncRNA 102632688 XM_006497076 Gm30694 - - 1 G3|1 predicted gene, 30694 protein-coding 545812 Mm.332769 NM_001024932 ENSMUSG00000066682 Pilrb2 EG545812 - 5|5 G2 paired immunoglobin-like type 2 receptor beta 2 protein-coding 110120526 LOC110120526 - - - VISTA enhancer mm1604 biological-region 102631973 XR_374764 Gm30168 - - 2 E1|2 predicted gene, 30168 ncRNA 100093665 Trnaa-cgc - - - transfer RNA alanine (anticodon CGC) tRNA 111711 Mpmv21 Mpmv-21 - - modified polytropic murine leukemia virus 21 other 100416272 Gm18013 - - 9|9 D HCLS1 associated X-1 pseudogene pseudo 13063 Mm.35389 NM_007808 ENSMUSG00000063694 Cycs - - 6 B2.3|6 24.32 cM cytochrome c, somatic protein-coding 11306 Mm.426128 NM_009592 ENSMUSG00000031333 Abcb7 AA517758|AU019072|Abc7 - X D|X 46.58 cM ATP-binding cassette, sub-family B (MDR/TAP), member 7 protein-coding 78943 Mm.340943 NM_023913 ENSMUSG00000020715 Ern1 9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p - 11|11 E1 endoplasmic reticulum (ER) to nucleus signalling 1 protein-coding 109215 Mm.65282 NR_077224 ENSMUSG00000110613 Lncbate1 3010033K07Rik|Lnc-BATE1 - 8|8 D3 brown adipose tissue enriched long non-coding RNA 1 ncRNA 100127433 Mm.156282 NR_133649 ENSMUSG00000087067 Gm11532 Sp6os - 11 D|11 predicted gene 11532 ncRNA 29835 Del(11)11Brd - - - deletion, Chr 11, Bradley 11 other 102634078 XM_017316813 LOC102634078 - - 15 A1 uncharacterized LOC102634078 protein-coding 100418120 Gm19013 - - 14|14 A3 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 102631977 XR_390980 9230110K08Rik - - 4|4 E2 RIKEN cDNA 9230110K08 gene ncRNA 19551 Rb(4.15)4Rma Rb4Rma - - Robertsonian translocation, Chr 4 and 15, Universita di Roma 4 other 380912 Mm.270087 NM_199029 ENSMUSG00000034522 Zfp395 BC053701|Gm910 - 14|14 D1 zinc finger protein 395 protein-coding 621809 Mm.360134 NR_040405 ENSMUSG00000105279 Gm6260 EG621809 - 3|3 H1 predicted gene 6260 ncRNA 24083 Mm.22780 NM_025294 ENSMUSG00000018931 Natd1 AI256713|F3-2|Gm16515|Gtlf3b - 11|11 B2 N-acetyltransferase domain containing 1 protein-coding 21259 T(7;15)9H T9H - - reciprocal translocation, Chr 7 and 15, Harwell 9 other 109364 El5 - - 14 34.39 cM epilepsy 5 unknown 100034675 Mm.420083 XR_873171 ENSMUSG00000085016 Gm11335 1700024h08rik - 13|13 A3.1 predicted gene 11335 unknown 102633674 XR_386564 Gm31441 - - 19 A|19 predicted gene, 31441 ncRNA 102633455 Gm31275 - - 13|13 predicted gene, 31275 ncRNA 246788 Mm.75196 NM_145099 ENSMUSG00000043029 Trpv3 1110036I10Rik|AI644701|Nh|VRL3 - 11 B4|11 45.25 cM transient receptor potential cation channel, subfamily V, member 3 protein-coding 102635691 Gm28608 - - Y|Y predicted gene 28608 ncRNA 105243459 XR_870937 Gm39375 - - 9 E1|9 predicted gene, 39375 ncRNA 97050 C76838 - - - expressed sequence C76838 unknown 100036437 Estoq3 Estq3 - - embryo survival total QTL 3 unknown 102635644 XR_380538 Gm32931 - - 10 B5.3|10 predicted gene, 32931 ncRNA 105349 Mm.41337 NM_134066 ENSMUSG00000021214 Akr1c18 AW146047 - 13|13 A1 aldo-keto reductase family 1, member C18 protein-coding 19486 Rb(13.15)10Mpl Rb10Mpl - - Robertsonian translocation, Chr 13 and 15, Montpellier 10 other 225929 Mm.42711 NM_172635 ENSMUSG00000046139 Patl1 AV312086|Pat1b - 19|19 A protein associated with topoisomerase II homolog 1 (yeast) protein-coding 100462728 Rps27-ps1 Gm11603 - 1 C2|1 32.14 cM ribosomal protein S27, pseudogene 1 pseudo 11604 Mm.441696 NM_007427 ENSMUSG00000005705 Agrp Agrt|Art - 8|8 D3 agouti related neuropeptide protein-coding 654458 Mm.390737 NM_001039121 ENSMUSG00000075572 Defb43 BD-43|EG654458|mBD-43 - 14 D1|14 defensin beta 43 protein-coding 100035894 Agnm2 - - 4 45.76 cM autoimmune glomerulonephritis in MRL 2 unknown 17695 Mm.2540 NM_020597 ENSMUSG00000021907 Msmb PIP|PSP94|beta-MSP - 14|14 B beta-microseminoprotein protein-coding 105246347 XR_877092 Gm41647 - - 17 E4|17 predicted gene, 41647 ncRNA 21205 T(5;13)264Ca T264Ca - - reciprocal translocation, Chr 5 and 13, Carter 264 other 111427 Mtv41 Mtv-41 - - mammary tumor virus locus 41 other 109579 Es2 Es-2 - - esterase 2 protein-coding 665846 Gm7820 EG665846 - X|X E3 aldolase A, fructose-bisphosphate pseudogene pseudo 100628572 NR_039546 ENSMUSG00000106183 Mir101c mir-101c|mmu-mir-101c - 9 A1|9 1.84 cM microRNA 101c ncRNA 53693 D2Mit1 D11S14h - 2 2.23 cM DNA segment, Chr 2, Massachusetts Institute of Technology 1 unknown 12840 Mm.269384 NM_007741 ENSMUSG00000028626 Col9a2 AI427499|Col9a-2 - 4 D2.2|4 56.78 cM collagen, type IX, alpha 2 protein-coding 102640465 XR_376075 Gm36520 - - 3 G3|3 predicted gene, 36520 ncRNA 100417976 Gm18929 - - 18|18 D3 protein phosphatase 4, regulatory subunit 1 pseudogene pseudo 636127 Trav7n-4 EG636127|Gm7174 - 14|14 C2 T cell receptor alpha variable 7N-4 other 100532 Mm.243632 NM_145923 ENSMUSG00000047881 Rell1 AA536743 - 5|5 C3.1 RELT-like 1 protein-coding 23965 Mm.42191 NM_011857 ENSMUSG00000031561 Tenm3 2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455 - 8|8 B1.1-B1.2 teneurin transmembrane protein 3 protein-coding 112269 C10bw3 - - 11 60.47 cM castaneus 10 week body weight 3 unknown 19212 Mm.229322 NM_008961 ENSMUSG00000026730 Pter AI790318|Mpr56-1 - 2|2 A1 phosphotriesterase related protein-coding 69147 Mm.307035 NM_026961 ENSMUSG00000013083 2200002J24Rik - - 7|7 B1 RIKEN cDNA 2200002J24 gene protein-coding 434077 Gm5578 EG434077 - 6|6 E3 BRO1 domain and CAAX motif containing pseudogene pseudo 68207 Mm.69396 1700040A12Rik - - 5|5 RIKEN cDNA 1700040A12 gene protein-coding 93673 Mm.24251 NM_053096 ENSMUSG00000033634 Nat8f2 Cml2 - 6|6 C3 N-acetyltransferase 8 (GCN5-related) family member 2 protein-coding 69442 1700023H06Rik - - 13|13 RIKEN cDNA 1700023H06 gene protein-coding 102637436 XR_376909 Gm26560 - - 5 B3|5 predicted gene, 26560 ncRNA 102639471 Mm.399264 XR_374609 Gm13599 - - 2 C1.3|2 39.31 cM predicted gene 13599 ncRNA 102637915 Gm13076 - - 4 D3|4 73.84 cM predicted gene 13076 pseudo 664906 Gm7398 EG664906 - X A3.1|X predicted gene 7398 pseudo 105245480 Gm40928 - - 13|13 predicted gene, 40928 ncRNA 668840 Rpl7a-ps7 EG668840|Gm9394 - 3|3 G3 ribosomal protein L7A, pseudogene 7 pseudo 22123 Mm.12194 NM_009439 ENSMUSG00000017221 Psmd3 AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a - 11 D|11 62.39 cM proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 protein-coding 100417227 Gm18466 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 606727 Gm14534 Ppia-psx_132.1 - X|X A1.1 peptidylprolyl isomerase A pseudogene x_132.1 pseudo 102633775 XR_388909 Gm31522 Gm45190 - 11 B5|11 predicted gene, 31522 ncRNA 100036523 Mm.398994 NR_040337 ENSMUSG00000097170 Gm16982 - - 7 F5|7 predicted gene, 16982 ncRNA 228866 Mm.241134 NM_146129 ENSMUSG00000039849 Pcif1 2310022K11Rik|C20orf67|F730014I05Rik - 2|2 H3 PDX1 C-terminal inhibiting factor 1 protein-coding 218214 Mm.31259 NM_172262 ENSMUSG00000038080 Kdm1b 4632428N09Rik|AI482520|Aof1 - 13|13 A5 lysine (K)-specific demethylase 1B protein-coding 20342 Mm.225405 NM_019414 ENSMUSG00000068877 Selenbp2 AP56|Lpsb2 - 3 F2.1|3 40.74 cM selenium binding protein 2 protein-coding 102635317 XR_386584 Gm32689 - - 19 B|19 predicted gene, 32689 ncRNA 100316784 NR_035448 ENSMUSG00000089204 Mir1927 mmu-mir-1927 - 1 H2.1|1 69.75 cM microRNA 1927 ncRNA 102633358 XR_380243 Gm31202 - - 10 B1|10 predicted gene, 31202 ncRNA 100039448 Gm12380 - - 4|4 A5 predicted gene 12380 pseudo 75379 Mm.348014 NR_045813 ENSMUSG00000073144 4930599N23Rik - - 6|6 B1 RIKEN cDNA 4930599N23 gene ncRNA 100124558 Vmn2r-ps62 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 62 pseudo 20958 Mm.423480 NR_024208 ENSMUSG00000109116 Sycp1-ps1 Sycp1-rs - 7 A3|7 9.31 cM synaptonemal complex protein 1, pseudogene 1 pseudo 108431 Xmmv46 Xmmv-46|Xp-5 - - xenotropic-MCF leukemia virus 46 other 100126438 Psds4 - - - psoriasis-like skin disease severity 4 unknown 19711 Mm.4032 NM_009049 ENSMUSG00000033061 Resp18 AI851012 - 1|1 C4 regulated endocrine-specific protein 18 protein-coding 105244642 XR_867979 Gm40218 - - 4 C7|4 predicted gene, 40218 ncRNA 234219 Mm.145631 NM_173789 ENSMUSG00000047171 Helt A830086M02|Hesl|Heslike|Mgn|megane - 8 B1.1|8 26.32 cM helt bHLH transcription factor protein-coding 75314 Mm.417815 4930551I23Rik - - 16|16 RIKEN cDNA 4930551I23 gene protein-coding 380777 Naca-rs Gm1878 - 4|4 B2 alpha NAC/1.9.2-related unknown 66294 Mm.166485 NM_025473 ENSMUSG00000031399 Fam3a 1810037C20Rik - X|X A7.3 family with sequence similarity 3, member A protein-coding 70545 5730433N10Rik - - 1|1 RIKEN cDNA 5730433N10 gene protein-coding 102634525 XR_381644 Gm38467 - - 12 C2|12 predicted gene, 38467 ncRNA 100040432 Gm14732 - - X|X A7.2 60S ribosomal protein L9-like pseudo 102639985 XR_389693 Gm36168 - - 3 B|3 predicted gene, 36168 ncRNA 75517 Mm.363927 NR_040508 ENSMUSG00000086186 Ccdc34os 1700024P03Rik - 2|2 E3 coiled-coil domain containing 34, opposite strand ncRNA 18936 pn - - - pugnose unknown 100418368 Gm13036 - - 4|4 E1 carnitine deficiency-associated gene expressed in ventricle 3 pseudogene pseudo 105244396 Gm40014 - - 2|2 predicted gene, 40014 ncRNA 330173 Mm.482205 NM_181075 ENSMUSG00000092486 2610524H06Rik - - 5|5 F RIKEN cDNA 2610524H06 gene protein-coding 77001 Mm.489049 NR_131068 ENSMUSG00000108490 1700110I07Rik Gm44522 - 7|7 B3 RIKEN cDNA 1700110I07 gene ncRNA 69209 2610024J18Rik - - 4|4 RIKEN cDNA 2610024J18 gene protein-coding 258159 Mm.388910 NM_001011856 ENSMUSG00000073769 Olfr1331 MOR259-3P - 4|4 D2.1 olfactory receptor 1331 protein-coding 102642581 Gm38616 - - 19 C1|19 predicted gene, 38616 pseudo 28187 D16Ium20e D16Ium20 - - DNA segment, Chr 16, Indiana University Medical 20, expressed unknown 21616 Tcrd-V1 - - - T cell receptor delta, variable 1 other 67932 Mm.65550 NM_026461 ENSMUSG00000021977 1700129C05Rik - - 14|14 C3 RIKEN cDNA 1700129C05 gene protein-coding 55978 Mm.358671 NM_018854 ENSMUSG00000001105 Ift20 0610009H04Rik|AU015496|mIFT20 - 11|11 B5 intraflagellar transport 20 protein-coding 62737 D18Mit179 - - 18 25.16 cM DNA segment, Chr 18, Massachusetts Institute of Technology 179 unknown 319317 Mm.294494 NM_175692 ENSMUSG00000044349 Snhg11 A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik - 2|2 H1 small nucleolar RNA host gene 11 protein-coding 381836 Mm.297829 NM_001146329 ENSMUSG00000030433 Sbk2 Gm1079|Sgk069 - 7|7 A1 SH3-binding domain kinase family, member 2 protein-coding 111500 Xmmv79 - - - xenotropic-MCF leukemia virus 79 other 62394 D17Mit113 - - 17 8.14 cM DNA segment, Chr 17, Massachusetts Institute of Technology 113 unknown 102634598 XR_386205 Gm32139 - - 18 B3|18 predicted gene, 32139 ncRNA 102633714 XR_374777 Gm31473 - - 2 E1|2 predicted gene, 31473 ncRNA 670895 XM_001474402 ENSMUSG00000112170 Gm9508 - - 10 C1|10 predicted gene 9508 protein-coding 68550 Mm.18466 NM_183275 ENSMUSG00000046909 Tefm 1110002N22Rik - 11 B5|11 47.53 cM transcription elongation factor, mitochondrial protein-coding 654356 Gm7329 EG654356 - 1|1 C2 malic enzyme, supernatant pseudogene pseudo 30791 Mm.294709 NM_013901 ENSMUSG00000052310 Slc39a1 Zip1|Zirtl - 3|3 F1 solute carrier family 39 (zinc transporter), member 1 protein-coding 77583 Mm.32839 NM_175263 ENSMUSG00000042988 Notum 5730593N15Rik - 11|11 E2 notum palmitoleoyl-protein carboxylesterase protein-coding 53661 D3Mc1 D3McC1 - - DNA segment, Chr 3, McClelland 1 unknown 110570 Tcra-V4.10 - - - T cell receptor alpha, variable 4.10 other 319454 Mm.442144 NR_045312 ENSMUSG00000085081 Rptoros A430071A18Rik - 11|11 E2 regulatory associated protein of MTOR, complex 1, opposite strand ncRNA 103093 AA516624 - - - expressed sequence AA516624 unknown 61392 D5Mit138 - - 5 64.01 cM DNA segment, Chr 5, Massachusetts Institute of Technology 138 unknown 100042266 Gm3756 - - 9 A4|9 tubulin, alpha 1B pseudogene pseudo 108402 Srev15 Srev-15 - - SWR/J-RF/J ecotropic provirus 15 other 110987 Myo7b-rs1 - - - myosin VIIb, related sequence 1 pseudo 77778 A430102O06Rik - - - RIKEN cDNA A430102O06 gene protein-coding 381667 Mm.332572 NM_001033459 ENSMUSG00000072754 Lrcol1 Clpsl3|Gm1679 - 5|5 F leucine rich colipase-like 1 protein-coding 630219 Gm7029 - - 17 B1|17 predicted gene 7029 protein-coding 109493 Alcp5 - - 2 103.43 cM alcohol preference locus 5, male specific unknown 102639043 XR_373454 Gm11608 - - 1 C2|1 32.31 cM predicted gene 11608 ncRNA 329644 Mm.246927 D930045L01 - - 3|3 D uncharacterized protein D930045L01 protein-coding 28030 Mm.122466 NM_138591 ENSMUSG00000027774 Gfm1 AW545374|D3Wsu133e|Gfm - 3 E1|3 30.96 cM G elongation factor, mitochondrial 1 protein-coding 638858 Gm7252 EG638858 - 12 A3|12 predicted gene 7252 pseudo 62710 D17Mit155 - - 17 55.02 cM DNA segment, Chr 17, Massachusetts Institute of Technology 155 unknown 100417991 Gm14281 - - 2|2 F1 chromosome segregation 1-like pseudogene pseudo 105245831 Gm41221 - - 14|14 predicted gene, 41221 ncRNA 100418379 Gm19170 - - 8|8 B3.3 upstream binding transcription factor, RNA polymerase I-like 1 pseudogene pseudo 676997 Gm9702 - - 13|13 A5 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 108169002 XR_001784541 LOC108169002 - - 4 C5 uncharacterized LOC108169002 ncRNA 108168149 XR_001781229 LOC108168149 - - 14 B uncharacterized LOC108168149 ncRNA 62402 D17Mit196 - - 17 3.58 cM DNA segment, Chr 17, Massachusetts Institute of Technology 196 unknown 108169021 XM_017321192 Gm46900 - - 5 A1|5 predicted gene, 46900 protein-coding 105244960 XR_872882 Gm40478 - - 12 D2|12 predicted gene, 40478 ncRNA 76892 Mm.262707 NM_029788 ENSMUSG00000020521 Rnft1 0610013E23Rik|AV007605 - 11|11 C ring finger protein, transmembrane 1 protein-coding 19220 Mm.331442 NM_008966 ENSMUSG00000028036 Ptgfr AI957154|PGF|fp - 3 H3|3 76.96 cM prostaglandin F receptor protein-coding 17167 Mm.1856 NM_010766 ENSMUSG00000026390 Marco AI323439|Ly112|Scara2 - 1|1 E2.3 macrophage receptor with collagenous structure protein-coding 207798 Mm.19316 NM_153528 ENSMUSG00000036292 Gramd1c 4921521N14Rik - 16|16 B4 GRAM domain containing 1C protein-coding 102634563 XR_391646 Gm32112 - - 7 D3|7 predicted gene, 32112 ncRNA 105242894 XR_881921 Gm38978 - - 7 B1|7 predicted gene, 38978 ncRNA 68637 Mm.384089 NM_001276278 ENSMUSG00000068073 1110025L11Rik - - 16|16 C3.3 RIKEN cDNA 1110025L11 gene protein-coding 102465895 NR_106184 ENSMUSG00000104627 Gm24148 Mir3535|mir-3535|mmu-mir-3535 - 1|1 C5 predicted gene, 24148 ncRNA 110120426 LOC110120426 - - - VISTA enhancer mm1460 biological-region 55982 Mm.277190 NM_018878 ENSMUSG00000002221 Paxip1 D5Ertd149e|PTIP - 5 B1|5 13.23 cM PAX interacting (with transcription-activation domain) protein 1 protein-coding 62741 D18Mit159 - - 18 17.57 cM DNA segment, Chr 18, Massachusetts Institute of Technology 159 unknown 102466843 NR_106130 ENSMUSG00000098285 Mir7670 Gm27707|mmu-mir-7670 - 6|6 B1 microRNA 7670 ncRNA 22632 Mm.3868 NM_009537 ENSMUSG00000021264 Yy1 AW488674|NF-E1 - 12 F1|12 59.58 cM YY1 transcription factor protein-coding 214394 Mm.123093 A530010F05Rik Gm560 - 2|2 F1 RIKEN cDNA A530010F05 gene protein-coding 16644 Mm.2160 NM_023125 ENSMUSG00000022875 Kng1 Kng - 16|16 B1 kininogen 1 protein-coding 105245437 Mm.446375 NR_136759 ENSMUSG00000113613 Gm40893 - - 12 E|12 predicted gene, 40893 ncRNA 100861655 LOC100861655 - - - PRAME family member 8-like pseudo 100043711 XR_385810 Gm4601 - - 17|17 E4 predicted gene 4601 ncRNA 76052 5830445D09Rik - - 11|11 RIKEN cDNA 5830445D09 gene protein-coding 69398 Mm.476887 NM_177090 ENSMUSG00000032595 Cdhr4 Cdh29 - 9|9 F1 cadherin-related family member 4 protein-coding 331623 Mm.490388 NM_199028 ENSMUSG00000038214 Bend3 mKIAA1553 - 10|10 B2 BEN domain containing 3 protein-coding 112275 Sluc10 - - 9 20.76 cM susceptibility to lung cancer 10 unknown 72556 Mm.441512 NM_152814 ENSMUSG00000078768 Zfp566 2700043M03Rik|mszf4 - 7|7 B1 zinc finger protein 566 protein-coding 60792 D3Mit64 - - 3 21.67 cM DNA segment, Chr 3, Massachusetts Institute of Technology 64 unknown 109168 Mm.264016 NM_146091 ENSMUSG00000024759 Atl3 4633402C03Rik|5730596K20Rik|AI465397|AW228836 - 19|19 A atlastin GTPase 3 protein-coding 223752 Mm.24442 NM_172611 ENSMUSG00000035900 Gramd4 9930016O13 - 15|15 E2 GRAM domain containing 4 protein-coding 100503219 Gm19596 - - 6 D1|6 37.57 cM protein aurora borealis-like pseudo 493151 Pfat1 - - 4 37.89 cM predicted fat percentage 1 unknown 27656 D1Dau3 - - - DNA segment, Chr 1, DA Underhill 3 unknown 108167636 XR_001779087 Gm46100 - - 9 A1|9 predicted gene, 46100 ncRNA 105247223 XR_881605 Gm42358 - - 4 E2|4 predicted gene, 42358 ncRNA 100416223 Gm17979 - - 5|5 G2 ribosomal protein S2 pseudogene pseudo 102639615 XR_390406 Gm35884 - - 4 A1|4 predicted gene, 35884 ncRNA 100316676 NR_035427 ENSMUSG00000080468 Mir1195 Mirn1195|mmu-mir-1195 - 17 E1.3|17 41.87 cM microRNA 1195 ncRNA 102650 AU014965 - - - expressed sequence AU014965 protein-coding 102638758 Gm26597 - - 5|5 predicted gene, 26597 ncRNA 606540 Gm12842 Ppia-ps4_1138.1 - 4|4 D2.1 peptidylprolyl isomerase A pseudogene 4_1138.1 pseudo 111678 Ms15-2 - - - minisatellite 15-2 detected by probe 33.15 other 626397 Mm.475092 NM_001101579 ENSMUSG00000057981 Vmn1r12 EG626397|Gm6674 - 6|6 B3 vomeronasal 1 receptor 12 protein-coding 27767 295F16.T7 - - - DNA segment, 295F16.T7 (Roswell Park) unknown 62960 D12Mit263 - - 12 62.11 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 263 unknown 102466847 NR_106150 ENSMUSG00000106406 Mir7682 mmu-mir-7682 - 1|1 G1 microRNA 7682 ncRNA 105245951 XR_875338 Gm41323 - - 15 C|15 predicted gene, 41323 ncRNA 227697 Mm.26690 NM_177648 ENSMUSG00000075419 Dolk BC026973|Tmem15|mKIAA1094 - 2|2 B dolichol kinase protein-coding 258887 Mm.223297 NM_146885 ENSMUSG00000109547 Olfr1294 MOR248-7 - 2|2 E3 olfactory receptor 1294 protein-coding 69665 Mm.75713 NM_027158 ENSMUSG00000006143 Upk3bl 2310043J07Rik|Upk3bl1 - 5|5 G2 uroplakin 3B-like protein-coding 442842 Mm.434374 XR_001780123 A830035A12Rik - - 11|11 E1 RIKEN cDNA A830035A12 gene unknown 237759 Mm.154093 NM_153393 ENSMUSG00000063564 Col23a1 2810458L13Rik|AI429655 - 11|11 B1.3 collagen, type XXIII, alpha 1 protein-coding 235134 Mm.238146 NM_172766 ENSMUSG00000042185 Nfrkb A530090G11Rik - 9|9 A4 nuclear factor related to kappa B binding protein protein-coding 100503874 Gm19938 - - 1|1 1.65 cM predicted gene, 19938 ncRNA 105247104 XR_881150 Gm42262 - - 4 A3|4 predicted gene, 42262 ncRNA 12735 Clc Clcp|gal-10 - - Charcot-Leyden crystal protein protein-coding 103930 Vng - - - van gogh unknown 73454 Mm.396229 NR_040467 ENSMUSG00000100062 1700063A18Rik - - 1|1 D RIKEN cDNA 1700063A18 gene ncRNA 20544 Mm.4312 NM_016981 ENSMUSG00000028854 Slc9a1 AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe - 4 D2.3|4 66.25 cM solute carrier family 9 (sodium/hydrogen exchanger), member 1 protein-coding 73473 Mm.66853 NM_173441 ENSMUSG00000024384 Iws1 1700069O15Rik|3000008H23|AL117927|AW214353 - 18|18 B1 IWS1, SUPT6 interacting protein protein-coding 493087 Sysbp2 - - 13 14.23 cM systolic blood pressure 2 unknown 244650 Mm.23494 NM_001122594 ENSMUSG00000031732 Phlpp2 AI481772|C130044A18Rik|Phlppl - 8|8 D3 PH domain and leucine rich repeat protein phosphatase 2 protein-coding 394191 Mm.436699 BC046401 - - 2|2 cDNA sequence BC046401 unknown 109818 Hom1 Hom-1 - - hormone metabolism 1 protein-coding 100124361 Traj28 Gm16820 - 14|14 C2 T cell receptor alpha joining 28 other 320404 Mm.132535 NM_001081175 ENSMUSG00000038855 Itpkb 1110033J02Rik|E130307H12Rik - 1 H4|1 84.27 cM inositol 1,4,5-trisphosphate 3-kinase B protein-coding 56452 Mm.29709 NM_019716 ENSMUSG00000031697 Orc6 6720420I10Rik|Orc6l - 8|8 C3 origin recognition complex, subunit 6 protein-coding 56715 Mm.288639 NM_019983 ENSMUSG00000025340 Rabgef1 Rab5ef|Rabex5|Rin2 - 5|5 G1.3 RAB guanine nucleotide exchange factor (GEF) 1 protein-coding 12044 Mm.425593 NM_009742 ENSMUSG00000102037 Bcl2a1a A1|BB218357|Bcl2a1|Bfl-1|Hbpa1 - 9 E3.1|9 47.24 cM B cell leukemia/lymphoma 2 related protein A1a protein-coding 21184 T(4;6)48Ad T48Ad - - reciprocal translocation, Chr 4 and 6, Adler 48 other 100418223 Gm13260 - - 2|2 A1 proteasome (prosome, macropain) 26S subunit, ATPase, 6 pseudogene pseudo 21095 T(15;18)22Ad T22Ad - - reciprocal translocation, Chr 15 and 18, Adler 22 other 258961 Mm.438897 NM_146959 ENSMUSG00000042219 Olfr631 MOR3-1 - 7|7 E3 olfactory receptor 631 protein-coding 66387 Mm.259222 NM_025529 ENSMUSG00000110949 Nudt8 2310039H17Rik - 19|19 A nudix (nucleoside diphosphate linked moiety X)-type motif 8 protein-coding 15186 Mm.18603 NM_008230 ENSMUSG00000027360 Hdc AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s - 2 F1|2 61.76 cM histidine decarboxylase protein-coding 75932 4930590H14Rik - - 9|9 RIKEN cDNA 4930590H14 gene protein-coding 359868 DXMgc19 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 19 unknown 213484 Mm.34191 NM_153136 ENSMUSG00000045211 Nudt18 BC036718 - 14|14 D2 nudix (nucleoside diphosphate linked moiety X)-type motif 18 protein-coding 102639505 XM_017319408 ENSMUSG00000095545 LOC102639505 - - 2 H4 zinc finger protein 431-like protein-coding 76338 Mm.32870 NM_172601 ENSMUSG00000022159 Rab2b 1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik - 14|14 C2 RAB2B, member RAS oncogene family protein-coding 29848 Mm.424497 NR_033638 ENSMUSG00000111338 Olfr29-ps1 MOR262-11|MTPCR52|Olfr158|Olfr29|Olfr37d|mOR37d - 4|4 B1 olfactory receptor 29, pseudogene 1 pseudo 378466 Mm.37846 NM_194351 ENSMUSG00000110444 Gm10033 9330175B10Rik|Gm10311 - 8 B3.3|8 predicted gene 10033 ncRNA 102638118 XR_383403 Gm34756 - - 14 C1|14 predicted gene, 34756 ncRNA 102636121 XR_389479 Gm33283 - - 5 E5|5 predicted gene, 33283 ncRNA 100502686 Gm15946 - - 17|17 8.73 cM 28S ribosomal protein S18c, mitochondrial-like pseudo 102636734 Gm41465 - - 16|16 C1.3 protein FAM60A-like pseudo 110084 Mm.101811 NM_001033668 ENSMUSG00000019027 Dnah1 B230373P09Rik|Dnahc1|E030034C22Rik|MDHC7 - 14 B|14 19.1 cM dynein, axonemal, heavy chain 1 protein-coding 102640620 XR_377851 Gm36639 - - 6 D1|6 predicted gene, 36639 ncRNA 666568 Gm8168 EG666568 - 8|8 A3 eukaryotic translation initiation factor 3, subunit H pseudogene pseudo 71301 Mm.254475 NR_045167 ENSMUSG00000097725 4930593A02Rik 4933440I01Rik - 3|3 D RIKEN cDNA 4930593A02 gene ncRNA 102636838 XR_384919 Gm33797 - - 16 C1.3|16 predicted gene, 33797 ncRNA 100042268 XM_011251082 Gm20907 - - Y|Y C3 predicted gene, 20907 protein-coding 75467 Mm.50108 NM_029298 ENSMUSG00000036557 Stpg4 1700011E24Rik|GSE - 17|17 E4 sperm tail PG rich repeat containing 4 protein-coding 53156 138d12-Sp6 - - - DNA segment, 138d12-Sp6 unknown 100504071 Gm20044 - - 15|15 37.7 cM predicted gene, 20044 ncRNA 319782 Mm.444842 A730021G18Rik - - 16|16 RIKEN cDNA A730021G18 gene protein-coding 102637777 XR_384084 Gm34503 - - 15 C|15 predicted gene, 34503 ncRNA 105246107 Gm41449 - - 16|16 predicted gene, 41449 ncRNA 62800 D14Mit219 - - 14 45.31 cM DNA segment, Chr 14, Massachusetts Institute of Technology 219 unknown 56024 D5Buc49 - - - DNA segment, Chr 5, Bucan 49 unknown 97292 C79238 - - - expressed sequence C79238 unknown 74626 Mm.34611 NM_029025 ENSMUSG00000048174 Tmem81 4930429O20Rik|AI465369 - 1|1 E4 transmembrane protein 81 protein-coding 67414 Mm.290414 NM_024200 ENSMUSG00000027668 Mfn1 2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032 - 3 A3|3 15.75 cM mitofusin 1 protein-coding 102635844 XR_001784806 LOC102635844 - - 5 A3 uncharacterized LOC102635844 ncRNA 109983 Ce2 Ce-2 - - catalase activity, kidney protein-coding 100861571 NR_046305 ENSMUSG00000064496 DQ267101 - - 12 F1|12 snoRNA DQ267101 snoRNA 666249 Gm8004 EG666249 - 1|1 E2.1 ribosomal protein L7A pseudogene pseudo 19125 Mm.28456 NM_011172 ENSMUSG00000003526 Prodh Pro-1|Pro1|Ym24d07 - 16 A3|16 11.19 cM proline dehydrogenase protein-coding 192289 Mm.394228 NM_138758 ENSMUSG00000079834 Tmlhe Bbox2|D430017M14Rik|TMLH - X|X trimethyllysine hydroxylase, epsilon protein-coding 100416122 Gm17928 - - 16|16 B4 Cd200 receptor 2 pseudogene pseudo 110120472 LOC110120472 - - 6|6 VISTA enhancer mm1470 biological-region 102632051 Mm.183422 XR_374331 Gm30225 - - 2 B|2 predicted gene, 30225 ncRNA 100462935 Gm19251 - - X F5|X 76.12 cM predicted gene, 19251 pseudo 100503414 Gm11650 - - 11|11 70.32 cM predicted gene 11650 ncRNA 62965 D14Mit234 - - 14 31.49 cM DNA Segment, Chr 14, Massachusetts Institute of Technology 234 unknown 109375 Dob1 Do1 - - dietary obesity 1 unknown 21213 T(5;15)4Ad T4Ad - - reciprocal translocation, Chr 5 and 15, Adler 4 other 12091 Mm.290516 NM_009752 ENSMUSG00000045594 Glb1 AW125515|Bge|Bgl|Bgl-e|Bgl-s|Bgl-t|Bgs|Bgt|C130097A14Rik - 9 F3|9 64.4 cM galactosidase, beta 1 protein-coding 13663 Mm.4337 NM_007915 ENSMUSG00000062762 Ei24 AA536736|AI115355|PIG8 - 9 A4|9 20.68 cM etoposide induced 2.4 mRNA protein-coding 319251 Mm.402857 NR_102378 ENSMUSG00000097825 9630001P10Rik - - 5|5 B3 RIKEN cDNA 9630001P10 gene ncRNA 17283 Mm.12917 NM_008583 ENSMUSG00000024947 Men1 AW045611 - 19|19 A multiple endocrine neoplasia 1 protein-coding 100042450 Mm.416919 NM_001134752 ENSMUSG00000093536 Smim17 Gm16532 - 7|7 A1 small integral membrane protein 17 protein-coding 70167 Mm.396387 2210414F02Rik - - 9|9 RIKEN cDNA 2210414F02 gene protein-coding 665325 Rps12-ps23 EG665325|Gm7586 - X|X E3 ribosomal protein S12, pseudogene 23 pseudo 102637720 Mm.394230 XR_386720 ENSMUSG00000090235 LOC102637720 - - 19 C3 uncharacterized LOC102637720 ncRNA 102467281 n-TCgca34 n-Tc34 - 6 B2.3|6 nuclear encoded tRNA cysteine 34 (anticodon GCA) tRNA 665797 Mm.328158 NR_110491 Gm7788 EG665797 - 18|18 A2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102632035 Gm30210 - - 6|6 predicted gene, 30210 ncRNA 105244262 XR_866637 Gm39903 - - 2 E3|2 predicted gene, 39903 ncRNA 100418156 Gm13462 - - 2|2 B ash2 (absent, small, or homeotic)-like pseudogene pseudo 100043095 Vmn1r-ps84 Gm4227 - 7 A3|7 vomeronasal 1 receptor, pseudogene 84 pseudo 16500 Mm.205341 NM_008420 ENSMUSG00000050556 Kcnb1 Kcr1-1|Kv2.1|Shab - 2 H3|2 87.22 cM potassium voltage gated channel, Shab-related subfamily, member 1 protein-coding 210198 Mm.221031 NM_153071 ENSMUSG00000019905 Gprc6a - - 10|10 B3 G protein-coupled receptor, family C, group 6, member A protein-coding 105245795 XR_874748 Gm20675 - - 14 D1|14 34.63 cM predicted gene 20675 ncRNA 114671 Mm.288194 NM_053264 ENSMUSG00000069712 4930444G20Rik - - 10|10 A3 RIKEN cDNA 4930444G20 gene protein-coding 676548 Gm9682 - - 3 H3|3 phosphatidylethanolamine binding protein 1 pseudogene pseudo 545056 Mm.266575 NR_002889 Gm5801 EG545056 - 14 C3|14 ubiquitin-conjugating enzyme E2, J2 homolog pseudogene pseudo 100306954 Mm.491822 NR_028571 ENSMUSG00000077192 Snora17 ACA17 - 2|2 A3 small nucleolar RNA, H/ACA box 17 snoRNA 71510 Mm.410775 NR_040645 ENSMUSG00000086070 8430436N08Rik - - 4|4 A1 RIKEN cDNA 8430436N08 gene ncRNA 100417651 Gm18740 - - 18|18 D3 ribonuclease/angiogenin inhibitor 1 pseudogene pseudo 104240 Jt1 Jt-1 - - I-J antigen expression protein-coding 52361 D9Ertd496e - - 9 29.84 cM DNA segment, Chr 9, ERATO Doi 496, expressed unknown 672511 Mm.133342 NM_001040005 ENSMUSG00000070327 Rnf213 6030403J01|D11Ertd759e|mKIAA1554 - 11 E2|11 83.48 cM ring finger protein 213 protein-coding 637758 Gm7219 EG637758 - X|X A4 predicted pseudogene 7219 protein-coding 100862398 Mm.4711 NM_001270516 ENSMUSG00000095948 Gm21708 - - Y A1|Y predicted gene, 21708 protein-coding 628537 Gm6893 EG628537 - 10|10 A4 predicted gene 6893 pseudo 76080 Mm.89828 NM_029512 ENSMUSG00000017679 Ttpal 3110080A02Rik|5830472M02Rik - 2|2 H3 tocopherol (alpha) transfer protein-like protein-coding 100039727 Mm.396220 NR_033636 ENSMUSG00000085077 1700049E15Rik Gm15761 - 6 G3|6 RIKEN cDNA 1700049E15 gene ncRNA 238871 Mm.434429 NM_011056 ENSMUSG00000021699 Pde4d 9630011N22Rik|Dpde3 - 13 D2.1|13 59.69 cM phosphodiesterase 4D, cAMP specific protein-coding 67726 Mm.25632 NM_026342 ENSMUSG00000020523 Fam114a2 1810073G14Rik|9030624B09Rik - 11|11 B1.3 family with sequence similarity 114, member A2 protein-coding 102636611 XR_391554 Gm33627 - - 7 C|7 predicted gene, 33627 ncRNA 107492 Tel7q - - - telomeric sequence, Chr 7, q arm protein-coding 258856 Olfr271-ps1 MOR262-3 - 4|4 B2 olfactory receptor 271, pseudogene 1 pseudo 19803 Rn4.5s-ps4 - - 1|1 A5 4.5s RNA, pseudogene 4 pseudo 102639609 XR_373464 Gm35880 - - 1 C2|1 predicted gene, 35880 ncRNA 320113 A430063P04Rik - - 13|13 RIKEN cDNA A430063P04 gene protein-coding 102636271 Gm33385 - - 12|12 predicted gene, 33385 protein-coding 380863 Mm.28264 NM_001025606 ENSMUSG00000052485 Tmem171 Gm905 - 13|13 D1 transmembrane protein 171 protein-coding 100502972 Gm19480 - - 1 C1.1|1 23.63 cM coenzyme Q-binding protein COQ10 homolog B, mitochondrial-like pseudo 100416818 Gm18276 - - 14|14 A3 cysteine rich protein 2 pseudogene pseudo 110120381 LOC110120381 - - - VISTA enhancer mm576 biological-region 620997 Mup-ps4 Gm14075 - 4 B3|4 major urinary protein, pseudogene 4 pseudo 17717 ND2 - - - NADH dehydrogenase subunit 2 protein-coding 105245394 XR_873193 Gm40858 - - 13 A3.1|13 predicted gene, 40858 ncRNA 492871 Aod1b - - - autoimmune ovarian dysgenesis 1b unknown 29870 Mm.20858 NM_013882 ENSMUSG00000022385 Gtse1 B99|Gtse-1 - 15 E2|15 40.42 cM G two S phase expressed protein 1 protein-coding 100217419 NR_034049 ENSMUSG00000064666 Snora52 MBI-20 - 7 F5|7 small nucleolar RNA, H/ACA box 52 snoRNA 74305 Mm.410860 NR_033213 ENSMUSG00000100511 1700111N16Rik - - X|X A7.2 RIKEN cDNA 1700111N16 gene ncRNA 627119 Gm6733 EG627119 - 11|11 B4 signal recognition particle receptor ('docking protein') pseudogene pseudo 72085 Mm.482256 NM_028091 ENSMUSG00000026096 Osgepl1 2610001M19Rik|AA416452 - 1 C1.1|1 26.99 cM O-sialoglycoprotein endopeptidase-like 1 protein-coding 100039890 Mm.458016 NM_001099920 ENSMUSG00000094941 Gm15093 - - X F3|X predicted gene 15093 protein-coding 51845 D2Ertd63e - - 2 88.46 cM DNA segment, Chr 2, ERATO Doi 63, expressed unknown 105247091 Gm42251 - - 4|4 predicted gene, 42251 ncRNA 27371 Mm.86361 NM_021309 ENSMUSG00000028071 Sh2d2a Lad|Ribp|Tsad - 3 F1|3 38.78 cM SH2 domain containing 2A protein-coding 76078 5830453J16Rik - - 11|11 RIKEN cDNA 5830453J16 gene protein-coding 109280061 LOC109280061 Mm568 - - VISTA enhancer mm568 biological-region 103354 AU021720 - - - expressed sequence AU021720 unknown 70523 Mm.158398 NR_045338 ENSMUSG00000097766 5730420D15Rik - - 10|10 C2 RIKEN cDNA 5730420D15 gene ncRNA 105242437 XR_874565 LOC105242437 - - 14 C1 uncharacterized LOC105242437 ncRNA 359930 DXMgc60 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 60 unknown 27598 D11Bhm188 E129 - 11 47.26 cM DNA segment, Chr 11, Boehm 188 protein-coding 625534 Ska2l-ps EG625534|Gm6597|Ska2l - 1|1 G1 spindle and kinetochore associated complex subunit 2-like, pseudogene pseudo 85054 D1Mit22 - - 1 30.44 cM DNA segment, Chr 1, Massachusetts Institute of Technology 22 unknown 100035989 Bdym1 - - - body mass 1 unknown 102637281 Gm26988 - - 10|10 predicted gene, 26988 pseudo 102632640 XR_383812 Gm30663 - - 15 A1|15 predicted gene, 30663 ncRNA 102637857 XR_384085 Gm34562 - - 15 C|15 predicted gene, 34562 ncRNA 77775 A430103D13Rik - - 12|12 RIKEN cDNA A430103D13 gene protein-coding 102638235 XR_387593 Gm34844 - - 5 F|5 predicted gene, 34844 ncRNA 102637056 Gm33962 - - 6|6 predicted gene, 33962 protein-coding 664804 XM_011249802 ENSMUSG00000073117 Gm7347 EG664804 - 5|5 B1 predicted gene 7347 protein-coding 105247002 Mm.364234 XR_880675 Gm42187 - - 3 A1|3 predicted gene, 42187 ncRNA 777784 Ighv5-11 - - 12|12 F1 immunoglobulin heavy variable V5-11 pseudo 105244943 Gm40465 - - 8|8 predicted gene, 40465 ncRNA 80884 Mm.22575 NM_030700 ENSMUSG00000025268 Maged2 4833439A22Rik|Mage-d2|ORF1 - X|X F3 melanoma antigen, family D, 2 protein-coding 61125 D5Mit387 - - 5 14.39 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 387 unknown 218629 Mm.35094 NM_172594 ENSMUSG00000042426 Dhx29 3732415M03|AU043276|Ddxx|E130202M19Rik - 13|13 D2.2 DEAH (Asp-Glu-Ala-His) box polypeptide 29 protein-coding 27938 D3Nds7 - - - DNA segment, Chr 3, Nuffield Department of Surgery 3 unknown 399573 1110065F06Rik - - - RIKEN cDNA 1110065F06 gene protein-coding 66923 Mm.27913 NM_025847 ENSMUSG00000042323 Pbrm1 2610016F04Rik|AI507524|BAF180|Pb1 - 14|14 B polybromo 1 protein-coding 633395 Mm.414290 NR_040534 ENSMUSG00000073607 Gm10548 - - 18 B1|18 ribosomal protein L29 pseudogene pseudo 319366 C920008N22Rik - - 7|7 RIKEN cDNA C920008N22 gene protein-coding 110655 Idd3 Idd-3 - 3 29.17 cM insulin dependent diabetes susceptibility 3 protein-coding 85206 D15Mit251 - - 15 7.96 cM DNA Segment, Chr 15 Massachusetts Institute of Technology 251 unknown 320469 Mm.230853 NM_177166 9930014A18Rik - - 15|15 D1 RIKEN cDNA 9930014A18 gene ncRNA 76498 Mm.491253 NM_023824 ENSMUSG00000023909 Paqr4 1500004C10Rik - 17|17 A3.3 progestin and adipoQ receptor family member IV protein-coding 67444 Mm.337240 NM_023343 ENSMUSG00000026309 Ilkap 0710007A14Rik|1600009O09Rik|PP2C-DELTA - 1|1 D integrin-linked kinase-associated serine/threonine phosphatase 2C protein-coding 19076 Mm.27705 NM_008922 ENSMUSG00000026134 Prim2 AI323589 - 1 12.7 cM|1 B DNA primase, p58 subunit protein-coding 102632856 XR_380101 Gm30820 - - 10 A1|10 predicted gene, 30820 ncRNA 105742 Mm.364546 AA516735 - - - expressed sequence AA516735 unknown 16196 Mm.3825 NM_008371 ENSMUSG00000040329 Il7 A630026I06Rik|Il-7|hlb368 - 3 A1|3 2.02 cM interleukin 7 protein-coding 102640312 XR_388615 Gm36411 - - 11 B1.2|11 predicted gene, 36411 ncRNA 233210 Mm.219137 NM_175022 ENSMUSG00000046574 Prr12 6720469B10|BC058674 - 7|7 B3 proline rich 12 protein-coding 98763 Mm.436877 AA407782 - - - expressed sequence AA407782 protein-coding 85176 D13Mit83 - - 13 12.9 cM DNA segment, Chr 13, Massachusetts Institute of Technology 83 unknown 62673 D15Mit148 - - 15 55.2 cM DNA segment, Chr 15, Massachusetts Institute of Technology 148 unknown 100035208 Lmrq1 - - - Leishmania major resistance QTL 1 unknown 12960 Mm.29488 NM_023695 ENSMUSG00000029343 Crybb1 3110006K12Rik|BB1CRY - 5 F|5 54.63 cM crystallin, beta B1 protein-coding 66011 Mm.383775 NM_023146 ENSMUSG00000040594 Ranbp17 - - 11|11 A4 RAN binding protein 17 protein-coding 228359 Mm.22413 NM_146124 ENSMUSG00000027247 Arhgap1 B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP - 2|2 E1 Rho GTPase activating protein 1 protein-coding 57900 D6Mgi34 AA986430 - - DNA Segment, Chr 6, Mouse Genome Informatics 34 unknown 105244158 Mm.52577 XM_011249336 1700024J04Rik - - 11|11 B1.2 RIKEN cDNA 1700024J04 gene protein-coding 105243623 Gm39479 - - 11|11 predicted gene, 39479 ncRNA 102642034 XR_001782781 LOC102642034 - - X B uncharacterized LOC102642034 ncRNA 100042385 Gm3815 - - 18 D1|18 polymerase (RNA) II (DNA directed) polypeptide C pseudogene pseudo 27394 L1Md-Tf16 - - - L1 repeat, Tf subfamily, member 16 other 791272 Mm.483772 Gm10091 - - - predicted gene 10091 unknown 13666 Mm.247167 NM_010121 ENSMUSG00000031668 Eif2ak3 Pek|Perk - 6|6 C1 eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 108169032 XR_001784826 Gm46904 - - 5 B1|5 predicted gene, 46904 ncRNA 142688 Mm.253061 NM_178283 ENSMUSG00000033781 Asb13 2210015B19Rik|6430573K02Rik|Asb-13|C85285 - 13|13 A1 ankyrin repeat and SOCS box-containing 13 protein-coding 102465894 NR_106183 ENSMUSG00000098957 Mir8105 Gm27346|mmu-mir-8105 - 10|10 D3 microRNA 8105 ncRNA 100502680 Gm10015 - - 8 B3.1|8 30.94 cM predicted gene 10015 pseudo 52028 Mm.23636 NM_001033128 ENSMUSG00000006464 Bbs1 AI451249|D19Ertd609e - 19|19 A Bardet-Biedl syndrome 1 (human) protein-coding 102633439 XR_001783509 Gm14154 - - 2 G3|2 74.83 cM predicted gene 14154 ncRNA 100418269 Cyp2d34-ps Gm19110 - 15|15 E1 cytochrome P450, family 2, subfamily d, polypeptide 34, pseudogene pseudo 74376 Mm.441903 NM_028901 ENSMUSG00000072720 Myo18b 4932408L24Rik|4933411E19Rik|Gm448 - 5|5 F myosin XVIIIb protein-coding 102633513 XR_385079 Gm31323 - - 16 C4|16 predicted gene, 31323 ncRNA 493112 Thyls2 Lyr3 - 5 47.29 cM thymic lymphoma susceptibility 2 unknown 103984 It - - - irregular teeth unknown 319343 C230047L17Rik - - 10|10 RIKEN cDNA C230047L17 gene protein-coding 71174 Mm.399537 NR_045846 ENSMUSG00000100733 4933416M06Rik - - 13|13 D1 RIKEN cDNA 4933416M06 gene ncRNA 102637859 XR_001784925 Gm20629 - - 5 F|5 53.24 cM predicted gene 20629 ncRNA 105246685 XR_878443 Gm41933 - - 1 E2.2-E2.3|1 predicted gene, 41933 ncRNA 105244938 XM_017312478 ENSMUSG00000110324 Gm40460 - - 7 F5|7 predicted gene, 40460 protein-coding 101749 AU018832 - - - expressed sequence AU018832 unknown 109753 Sfat - - - sulfate transporter protein-coding 433070 Mm.215962 NM_001104547 ENSMUSG00000091679 Vmn2r96 EG433070 - 17|17 A3.2 vomeronasal 2, receptor 96 protein-coding 66212 Mm.20188 NM_024171 ENSMUSG00000053317 Sec61b 1190006C12Rik|AI326121|AW122942 - 4|4 B1 Sec61 beta subunit protein-coding 106484 AA409289 - - - expressed sequence AA409289 protein-coding 61958 D7Mit326 - - 7 54.15 cM DNA Segment, Chr 7, Massachusetts Institute of Technology 326 unknown 100462932 Gm19248 - - 7 B3|7 30.65 cM thymosin, beta 10 pseudogene pseudo 102640080 XR_872505 Gm36235 - - 12 A1.1|12 predicted gene, 36235 ncRNA 640196 Trav11d Gm13970 - 14|14 C2 T cell receptor alpha variable 11D other 102635727 XR_382900 Gm32990 - - 13 D2.2|13 predicted gene, 32990 ncRNA 105244504 XR_867481 Gm40099 - - 3 F2.1|3 predicted gene, 40099 ncRNA 93670 Mm.40085 NM_053093 ENSMUSG00000020872 Tac4 AW489379|PPT-C - 11|11 D tachykinin 4 protein-coding 100035163 Crhtaq2 - - 12 60.94 cM Crh transcript abundance QTL 2 unknown 21215 T(5;15)8Gso T8Gso - - reciprocal translocation, Chr 5 and 15, Generoso 8 other 105740 AA511244 - - - expressed sequence AA511244 unknown 66586 Mm.357342 NM_025646 ENSMUSG00000027357 Crls1 0610009I22Rik|4930557M15Rik|5730490M08Rik - 2|2 F2 cardiolipin synthase 1 protein-coding 100035411 Chlq18 - - - circulating hormone level QTL 18 unknown 224530 Mm.490312 NM_153151 ENSMUSG00000062480 Acat3 ACTL - 17 A1|17 8.72 cM acetyl-Coenzyme A acetyltransferase 3 protein-coding 668806 Gm9370 EG668806 - 12|12 A3 high mobility group box 1-like pseudogene pseudo 105246244 XR_876701 LOC105246244 - - 17 A3.3 uncharacterized LOC105246244 ncRNA 638262 XR_874546 ENSMUSG00000094151 Gm7233 EG638262 - 14|14 B predicted gene 7233 protein-coding 170769 Gm4740 EG170769|TOB3L - 15|15 B3.1 ATPase family, AAA domain containing 3A pseudogene pseudo 100503486 Mm.482069 NM_207139 ENSMUSG00000095194 Olfr936 EG628171|MOR171-37 - 9|9 A5.1 olfactory receptor 936 protein-coding 723834 NR_029652 ENSMUSG00000065589 Mir301 Mirn301|mir-301a|mmu-mir-301 - 11|11 C microRNA 301 ncRNA 99982 Mm.28540 NM_133872 ENSMUSG00000036940 Kdm1a 1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601 - 4 D3|4 68.8 cM lysine (K)-specific demethylase 1A protein-coding 231050 Mm.246718 NM_144908 ENSMUSG00000038072 Galnt11 A430075I06Rik|AI648252|E430002F06Rik - 5|5 A3 polypeptide N-acetylgalactosaminyltransferase 11 protein-coding 665120 Gm7501 EG665120 - 16|16 C3.1 ribosomal protein L19 pseudogene pseudo 110120388 LOC110120388 - - - VISTA enhancer mm485 biological-region 404469 Olfr1074-ps1 GA_x6K02T2Q125-47972076-47971159 - 2|2 D olfactory receptor 1074, pseudogene 1 pseudo 100416301 Gm14716 - - X|X A7.3 UBX domain protein 2A pseudogene pseudo 103339 Mm.288897 AU016128 - - - expressed sequence AU016128 unknown 112268 Dps3 - - 17 17.98 cM delta power in slow-wave sleep 3 unknown 62428 D10Mit181 - - 10 2.57 cM DNA segment, Chr 10, Massachusetts Institute of Technology 181 unknown 102642146 XR_877958 Gm38597 - - 19 D2|19 predicted gene, 38597 ncRNA 102639606 XR_389219 Gm35878 - - 11 E2|11 predicted gene, 35878 ncRNA 328429 C230072K23 - - 14|14 C3 uncharacterized protein C230072K23 protein-coding 633295 Tdpx-ps1 EG633295|Gm7110|Prx|ll-2 - 1|1 E1.1 thioredoxin peroxidase, pseudogene 1 pseudo 52769 D4Wsu199e - - - DNA segment, Chr 4, Wayne State University 199, expressed unknown 72948 Mm.39752 NM_182839 ENSMUSG00000021573 Tppp 2900041A09Rik|AI849835 - 13|13 C1 tubulin polymerization promoting protein protein-coding 102466805 NR_106061 ENSMUSG00000099272 Mir7093 Gm27453|mmu-mir-7093 - X|X E3 microRNA 7093 ncRNA 359917 DXMgc52 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 52 unknown 257632 Mm.222633 NM_145857 ENSMUSG00000055994 Nod2 ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2 - 8|8 C3 nucleotide-binding oligomerization domain containing 2 protein-coding 109280068 LOC109280068 Mm641 - - VISTA enhancer mm641 biological-region 108168455 XR_001782766 Gm46679 - - X A7.2|X predicted gene, 46679 ncRNA 100041931 Mm.402705 Gm13403 - - 2|2 B predicted gene 13403 unknown 493166 Synch3 - - 1 50.73 cM synechia 3 unknown 105245996 XR_875495 Gm41363 - - 15 E1|15 predicted gene, 41363 ncRNA 21091 T(15;16)1Kl - - - reciprocal translocation, Chr 15 and 16, Klein 1 other 102632302 Mm.281153 NR_155303 Hoxb3os Gm11530|Hoxb3s - 11 59.85 cM|11 D homeobox B3 and homeobox B2, opposite strand ncRNA 100504013 Gm20014 - - 11|11 84.26 cM predicted gene, 20014 ncRNA 102634546 XR_384676 Gm32100 - - 16 A1|16 predicted gene, 32100 ncRNA 109279888 LOC109279888 Mm45 - - VISTA enhancer mm45 biological-region 432555 Mm.338931 NM_001024230 ENSMUSG00000058163 Gm5431 EG432555|Irgb9b8 - 11|11 B1.2 predicted gene 5431 protein-coding 105245952 Gm41324 - - 15|15 predicted gene, 41324 ncRNA 100038973 Gm13835 - - 6|6 A3.3 proteasome (prosome, macropain) subunit, alpha type 3 pseudogene pseudo 105242439 Gm38706 - - 6 F3|6 predicted gene, 38706 pseudo 327987 Mm.341886 NM_001080931 ENSMUSG00000034297 Med13 1110067M05Rik|D030023K18|Thrap1|Trap240 - 11|11 C mediator complex subunit 13 protein-coding 111326 Ddx5-ps1 Ddx5-rs1|Hlr1-ps1|Hlr1-rs1 - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, pseudogene 1 pseudo 100040196 Gm20830 - - Y|Y predicted gene, 20830 protein-coding 109280070 LOC109280070 Mm652 - - VISTA enhancer mm652 biological-region 100124485 NR_130319 ENSMUSG00000106608 Mir466b-1 Mir466b-1a|Mirn466b-1|Mirn466b-1a|mmu-mir-466b-1 - 2 A1|2 microRNA 466b-1 ncRNA 19165 Mm.330850 NM_011183 ENSMUSG00000010609 Psen2 ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2 - 1 H4|1 84.19 cM presenilin 2 protein-coding 105877 Mm.66794 AI605151 - - - expressed sequence AI605151 protein-coding 100042348 Gm10221 - - 5 A3|5 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene pseudo 102632851 XR_870696 Gm30816 - - 9 A5.2|9 predicted gene, 30816 ncRNA 71367 Mm.329304 NM_199055 ENSMUSG00000047161 Chst9 5430438D01Rik - 18|18 A1 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 protein-coding 12028 Mm.19904 NM_007527 ENSMUSG00000003873 Bax - - 7 B3|7 29.32 cM BCL2-associated X protein protein-coding 109280029 LOC109280029 Mm235 - - VISTA enhancer mm235 biological-region 384198 Mm.76757 NM_001033478 ENSMUSG00000057068 Fam47e C730043O17|Gm1381 - 5|5 E2 family with sequence similarity 47, member E protein-coding 216616 Mm.44176 NM_146015 ENSMUSG00000020467 Efemp1 - - 11|11 A3.3 epidermal growth factor-containing fibulin-like extracellular matrix protein 1 protein-coding 112201 Skts5 - - 12 18.06 cM skin tumor susceptibility 5 unknown 100502631 Rps19-ps11 Gm16562 - 10 B2|10 22.97 cM ribosomal protein S19, pseudogene 11 pseudo 112172 Daq6 - - 10 41.33 cM directional asymmetry QTL 6 unknown 319973 Mm.233955 NR_040667 A630077J23Rik - - 4|4 B1 RIKEN cDNA A630077J23 gene ncRNA 20983 Mm.233846 NM_009308 ENSMUSG00000024261 Syt4 SytIV - 18 B1|18 17.75 cM synaptotagmin IV protein-coding 100113459 Brml12 - - - bone response to mechanical loading 12 unknown 667951 Gm8893 - - 12 E|12 serine (or cysteine) preptidase inhibitor, clade A, member 1B pseudogene pseudo 62136 D13Mit66 - - 13 34.54 cM DNA segment, Chr 13, Massachusetts Institute of Technology 66 unknown 77431 Mm.41812 9530001D17Rik - - 13|13 RIKEN cDNA 9530001D17 gene protein-coding 627557 Gm6768 EG627557 - 12|12 F2 predicted gene 6768 pseudo 108127 Cdc34-rs1 - - - cell division cycle 34 homolog, related sequence 1 (S. cerevisiae) protein-coding 667375 Gm8598 EG667375 - 13|13 A1 COX11 homolog, cytochrome c oxidase assembly protein pseudogene pseudo 22355 Mm.395245 NM_009511 ENSMUSG00000011171 Vipr2 VPAC2|VPAC2R|Vip2 - 12 62.59 cM|12 F2 vasoactive intestinal peptide receptor 2 protein-coding 101957 AA517631 - - - expressed sequence AA517631 unknown 108830 5530401I05Rik - - 1|1 RIKEN cDNA 5530401I05 gene protein-coding 100040996 Gm3084 - - 14 A1|14 predicted gene 3084 protein-coding 320802 Mm.154486 NM_177265 ENSMUSG00000045777 Ifitm10 6330512M04Rik|AI848576|DSPA3 - 7|7 F5 interferon induced transmembrane protein 10 protein-coding 100039248 Gm2117 - - X A2|X predicted gene 2117 protein-coding 100415959 Gm17840 - - 7|7 D2 cullin 4B pseudogene pseudo 102632432 XR_384971 Gm30507 - - 16 C3.1|16 predicted gene, 30507 ncRNA 667718 Gm21976 EG667718|Gm8780 - 13 D1|13 predicted gene 21976 protein-coding 360083 D17Jcs18 - - - DNA segment, Chr 17, John C. Schimenti 18 unknown 102635843 XR_373562 Gm33083 - - 1 C4|1 predicted gene, 33083 ncRNA 66129 Mm.491110 NM_025370 ENSMUSG00000021482 Aaed1 1110018J18Rik|AI849003 - 13|13 B3 AhpC/TSA antioxidant enzyme domain containing 1 protein-coding 668655 Gm9288 EG668655 - 17|17 E1.1 predicted gene 9288 pseudo 100503802 Mm.131865 XR_880539 Gm10419 6330405H19 - 5|5 F predicted gene 10419 ncRNA 359865 DXMgc42 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 42 unknown 12262 Mm.439732 NM_007574 ENSMUSG00000036896 C1qc AI385742|C1qg|Ciqc - 4 D3|4 69.05 cM complement component 1, q subcomponent, C chain protein-coding 109481 Sles4 - - 9 2.46 cM systemic lupus erythmatosus suppressor 4 unknown 100039843 Gm2452 - - 1|1 A3 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 100035384 Mohg9 - - - modifier of hg 9 unknown 100861766 Mm.133851 Gm16755 - - 11|11 84.18 cM predicted gene, 16755 ncRNA 100124400 Traj1 Gm16917 - 14|14 C2 T cell receptor alpha joining 1 pseudo 74012 Mm.422674 NM_028712 ENSMUSG00000036894 Rap2b 4021402C18Rik|AA408554 - 3|3 E1 RAP2B, member of RAS oncogene family protein-coding 100416128 Gm17930 - - 7|7 C SET translocation pseudogene pseudo 111914 Iapls3-67 - - - intracisternal A particle, lymphocyte specific, probe 3-67 other 102465227 NR_105846 ENSMUSG00000098597 Mir6418 Gm27629|mir-6418|mmu-mir-6418 - 5|5 G2 microRNA 6418 ncRNA 74630 4930432N10Rik - - 17|17 A1 RIKEN cDNA 4930432N10 gene protein-coding 16716 Mm.101692 NM_024291 ENSMUSG00000035606 Ky CD1|D9Mgc44e|ky - 9 F1|9 54.54 cM kyphoscoliosis peptidase protein-coding 100504429 Mm.307966 NM_001243002 ENSMUSG00000079566 Spin2d 4930408F14Rik - X A7.3|X 37.29 cM spindlin family, member 2D protein-coding 100008564 Gm14018 Wdr76p - 2|2 E5 WD repeat domain 76 pseudogene pseudo 98682 Mm.491173 NM_133829 ENSMUSG00000041439 Mfsd6 2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2 - 1|1 C1.1 major facilitator superfamily domain containing 6 protein-coding 12565 Mm.439758 NM_009869 ENSMUSG00000025370 Cdh9 - - 15|15 A2 cadherin 9 protein-coding 102638389 Mm.390042 XR_870455 5730405A17Rik - - 8|8 B3.1 RIKEN cDNA 5730405A17 gene ncRNA 433294 Mm.123621 NM_001013799 ENSMUSG00000047343 Mettl21c A530098C11Rik - 1|1 C1.1 methyltransferase like 21C protein-coding 102637058 XR_388815 Gm33964 - - 11 B4|11 predicted gene, 33964 ncRNA 258730 Mm.377661 NM_146735 ENSMUSG00000078118 Olfr483 MOR204-12 - 7|7 E3 olfactory receptor 483 protein-coding 100038610 Mm.415267 XR_872056 Gm10747 - - 10 D2|10 predicted gene 10747 unknown 105246159 Gm41493 - - 16|16 predicted gene, 41493 ncRNA 13196 Mm.277236 NM_010026 ENSMUSG00000022377 Asap1 AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19 - 15|15 D1 ArfGAP with SH3 domain, ankyrin repeat and PH domain1 protein-coding 70350 Mm.29586 NM_027395 ENSMUSG00000045763 Basp1 2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22 - 15|15 B1 brain abundant, membrane attached signal protein 1 protein-coding 102467564 n-TKctt10 n-Tk10 - 11 B1.2|11 nuclear encoded tRNA lysine 10 (anticodon CTT) tRNA 76076 5830453K13Rik - - 15|15 RIKEN cDNA 5830453K13 gene unknown 102641704 Mm.255027 XR_880303 Gm11690 - - 11 E2|11 79.65 cM predicted gene 11690 ncRNA 493154 Scfq1 - - - subcutaneous fat pad weight QTL 1 unknown 108168777 XR_001783416 LOC108168777 - - 2 E1 uncharacterized LOC108168777 ncRNA 105244320 Mm.440468 XR_866798 Gm39954 - - 2 G1|2 predicted gene, 39954 ncRNA 21236 T(6F;18C)57Dn T(6;18)57Dn|T57Dn - - reciprocal translocation, Chr 6, cytogenetic band F; and Chr 18, cytogenetic band C, Davisson 57 other 100038724 Mm.483489 Gm10304 - - 4 C6|4 predicted gene 10304 unknown 381974 Mm.297839 NM_203492 ENSMUSG00000050276 Mrgprg Gm1098|Mrgg - 7|7 F5 MAS-related GPR, member G protein-coding 109279908 LOC109279908 Mm123 - - VISTA enhancer mm123 biological-region 105243742 XR_878311 Gm39549 - - X F5|X predicted gene, 39549 ncRNA 102638409 Gm34984 - - 12|12 predicted gene, 34984 pseudo 100093696 Trnastop-cua - - - transfer RNA amber suppressor (anticodon CUA) tRNA 666649 Gm8214 EG666649 - 1|1 H5 predicted gene 8214 protein-coding 100036116 Bod11 BOD19.1 - 19 13.82 cM bone length and organs 11 unknown 258835 Mm.451666 NM_146838 ENSMUSG00000059205 Olfr1130 MOR264-4 - 2|2 D olfactory receptor 1130 protein-coding 66404 Mm.25157 NM_025542 ENSMUSG00000027502 Rtf2 1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1 - 2|2 H3 replication termination factor 2 protein-coding 100041796 Gm14206 Gm1563 - 11|11 D predicted gene 14206 protein-coding 61834 D2Mit309 - - 2 75.03 cM DNA segment, Chr 2, Massachusetts Institute of Technology 309 unknown 102639528 Gm16335 - - 13|13 53.23 cM predicted gene 16335 pseudo 100042324 Gm14815 - - X C3|X dCMP deaminase pseudogene pseudo 56274 Mm.262330 NM_019635 ENSMUSG00000022329 Stk3 0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1 - 15|15 B3.1 serine/threonine kinase 3 protein-coding 269966 Mm.439800 NM_022979 ENSMUSG00000063550 Nup98 4732457F17|AI849286|Nup96 - 7 E2|7 54.71 cM nucleoporin 98 protein-coding 102465673 NR_106067 ENSMUSG00000098831 Mir7119 Gm27560|mmu-mir-7119 - 4|4 D2.2 microRNA 7119 ncRNA 71624 Mm.139075 NR_102285 ENSMUSG00000109089 4833411C07Rik - - 8|8 A1.1 RIKEN cDNA 4833411C07 gene ncRNA 238333 Mm.302304 NM_001290288 ENSMUSG00000090812 Samd15 Gm263 - 12|12 D2 sterile alpha motif domain containing 15 protein-coding 667919 Gm8880 EG667919 - X|X C1 predicted gene 8880 pseudo 666127 Gm7940 EG666127 - 10|10 B1 ribosomal protein L7A pseudogene pseudo 102632216 XR_387129 Gm30354 - - X F5|X predicted gene, 30354 ncRNA 23983 Mm.274146 NM_011865 ENSMUSG00000051695 Pcbp1 WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1 - 6|6 D1 poly(rC) binding protein 1 protein-coding 100502950 Mm.52981 NM_001195253 ENSMUSG00000095026 Gm3336 100041434|2410018E23Rik - 8 B3.3|8 predicted gene 3336 protein-coding 217154 Mm.181008 NM_146028 ENSMUSG00000017400 Stac2 24b2|24b2/STAC2|AW240854 - 11|11 D SH3 and cysteine rich domain 2 protein-coding 114530 Pgia13 - - - proteoglycan induced arthritis 13 unknown 320181 Mm.244233 NM_177091 ENSMUSG00000045326 Fndc7 E230011A21Rik - 3|3 F3 fibronectin type III domain containing 7 protein-coding 74651 Mm.405588 4930435M08Rik - - 14|14 RIKEN cDNA 4930435M08 gene protein-coding 66496 Mm.213943 NM_025598 ENSMUSG00000016344 Ppdpf 0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik - 2|2 H4 pancreatic progenitor cell differentiation and proliferation factor protein-coding 105246447 XR_877443 Gm41736 - - 18 D3|18 predicted gene, 41736 ncRNA 100417108 Gm18400 - - 4|4 D1 TRAF3 interacting protein 2 pseudogene pseudo 109521 Abhr2 - - 2 22.83 cM antigen-induced bronchial hyperresponsiveness 2 unknown 102632463 Mm.400402 NR_151620 ENSMUSG00000079045 LOC102632463 - - 1 H6 uncharacterized LOC102632463 ncRNA 100416753 Gm18230 - - 19|19 C3 uracil DNA glycosylase pseudogene pseudo 208117 Mm.41291 NM_177583 ENSMUSG00000032375 Aph1b 2310057K14Rik|Aph1c - 9|9 C aph1 homolog B, gamma secretase subunit protein-coding 99517 AA589455 - - - expressed sequence AA589455 unknown 258828 Mm.390995 NM_146831 ENSMUSG00000063240 Olfr133 MOR256-6 - 17|17 B1 olfactory receptor 133 protein-coding 665687 XM_017318730 ENSMUSG00000094813 Gm20777 - - Y|Y A1 predicted gene, 20777 protein-coding 51919 D2Ertd634e - - 2 70.42 cM DNA segment, Chr 2, ERATO Doi 634, expressed unknown 635412 Gm7158 EG635412 - X F3|X cell division protein kinase 4 pseudogene pseudo 791385 Gm10276 - - - predicted gene 10276 unknown 100038707 Mm.366876 Gm10388 - - - predicted gene 10388 unknown 100417864 Gm18869 - - 16|16 A3 heterogeneous nuclear ribonucleoprotein L pseudogene pseudo 102638112 XR_879055 Gm34751 - - 8 C3|8 predicted gene, 34751 ncRNA 102634039 XR_874638 Gm20687 - - 14 C3|14 28.05 cM predicted gene 20687 ncRNA 232431 Mm.23575 NM_181444 ENSMUSG00000046733 Gprc5a Rai3|Raig1 - 6|6 G1 G protein-coupled receptor, family C, group 5, member A protein-coding 60773 D2Mit94 - - 2 47.93 cM DNA segment, Chr 2, Massachusetts Institute of Technology 94 unknown 100041399 Gm10327 - - 10|10 B1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 67690 Mm.52550 NM_026317 ENSMUSG00000029909 Prss37 1700016G05Rik|Tryx2 - 6|6 B1 protease, serine 37 protein-coding 492942 Modc1 Moo1 - - modifier of Odc1 unknown 102636847 XR_380156 Gm33803 - - 10 A3|10 predicted gene, 33803 ncRNA 102636024 XR_866776 LOC102636024 - - 2 F3 uncharacterized LOC102636024 ncRNA 111525 Tcra-V3 - - - T cell receptor alpha, variable 3 other 16273 In(2)5Rk-p In(2)5Rk|In5Rk - - inversion, Chr 2, Roderick 5, proximal other 105244810 Gm40355 - - 6|6 predicted gene, 40355 protein-coding 665944 Gm7858 EG665944 - 1|1 A5 high mobility group box 1-like pseudogene pseudo 224648 Mm.291291 NM_001080769 ENSMUSG00000039512 Uhrf1bp1 1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127 - 17|17 A3.3 UHRF1 (ICBP90) binding protein 1 protein-coding 668217 Gm9050 EG668217 - X|X D predicted gene 9050 pseudo 12983 Mm.235324 NM_007780 ENSMUSG00000071713 Csf2rb AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb - 15 E1|15 37.36 cM colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) protein-coding 20237 sc - - - screwtail unknown 106762 Mm.441296 AW047481 - - - expressed sequence AW047481 protein-coding 102634024 Gm31709 - - 7 B2|7 predicted gene, 31709 pseudo 227615 Mm.213925 NM_177344 ENSMUSG00000078201 Tmem203 C730025P13Rik|Hbebp1 - 2|2 A3 transmembrane protein 203 protein-coding 233164 Mm.67238 NM_183166 ENSMUSG00000048312 Gm4884 4930549O06|EG233164 - 7 B3|7 predicted gene 4884 protein-coding 73032 Mm.44095 NM_028417 ENSMUSG00000007944 Ttc9b 2900074C18Rik - 7|7 A3 tetratricopeptide repeat domain 9B protein-coding 77525 C030013C02Rik - - 6|6 RIKEN cDNA C030013C02 gene protein-coding 103284 Mm.68289 NM_134003 ENSMUSG00000039810 Zc3h10 AI790326 - 10|10 D3 zinc finger CCCH type containing 10 protein-coding 19227 Mm.28440 NM_008970 ENSMUSG00000048776 Pthlh PLP|PTH-like|Pthrp - 6 G3|6 78.19 cM parathyroid hormone-like peptide protein-coding 109494 Alcp7 - - 4 16.7 cM alcohol preference locus 7, male specific unknown 383341 Gm5239 EG383341 - 18|18 B2 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene pseudo 108167449 LOC108167449 - - 7 E2 cytochrome c oxidase protein 20 homolog pseudogene pseudo 636082 Gm16462 EG667726 - X|X B predicted gene 16462 protein-coding 12334 Mm.19306 NM_009794 ENSMUSG00000026509 Capn2 AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin - 1|1 H5 calpain 2 protein-coding 75236 4930526M16Rik - - 5|5 RIKEN cDNA 4930526M16 gene protein-coding 51813 Mm.278584 NM_016746 ENSMUSG00000028252 Ccnc AI451004|AU020987|CG1C - 4|4 A3 cyclin C protein-coding 675440 Gm13430 - - 2|2 B predicted gene 13430 ncRNA 667500 Gm8669 EG667500 - 6 A1|6 centromere protein E pseudogene pseudo 61982 D9Mit298 - - 9 26.4 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 298 unknown 74256 Mm.490395 NM_173369 ENSMUSG00000036712 Cyld 2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849 - 8|8 C3 CYLD lysine 63 deubiquitinase protein-coding 100417951 Gm18917 - - 2|2 H4 adenomatosis polyposis coli down-regulated 1 pseudogene pseudo 56360 Mm.268710 NM_019736 ENSMUSG00000025287 Acot9 0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48 - X|X F3 acyl-CoA thioesterase 9 protein-coding 52467 Mm.288460 D11Ertd72e - - 11 45.76 cM DNA segment, Chr 11, ERATO Doi 72, expressed unknown 105247096 XR_881131 Gm42255 - - 4 A1|4 predicted gene, 42255 ncRNA 18595 Mm.221403 NM_011058 ENSMUSG00000029231 Pdgfra AI115593|CD140a|Pdgfr-2 - 5 C3.3|5 39.55 cM platelet derived growth factor receptor, alpha polypeptide protein-coding 258502 Mm.377539 NM_001001807 ENSMUSG00000054036 Olfr279 MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1 - 15|15 F1 olfactory receptor 279 protein-coding 664877 Gm7386 EG664877 - X A2|X predicted pseudogene 7386 pseudo 414872 Mm.426241 NM_001033634 ENSMUSG00000034636 Zyg11b 1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730 - 4|4 C7 zyg-ll family member B, cell cycle regulator protein-coding 61840 D19Mit94 - - 19 5.22 cM DNA segment, Chr 19, Massachusetts Institute of Technology 94 unknown 105245503 XR_873407 Gm40951 - - 13 B1|13 predicted gene, 40951 ncRNA 52094 D8Ggc5e - - - DNA segment, Chr 8, G. Consalez 5, expressed unknown 216527 Mm.221271 NM_146014 ENSMUSG00000000378 Ccm2 BC029157 - 11|11 A1 cerebral cavernous malformation 2 protein-coding 100417797 Gm18833 - - 17|17 B1 developmental pluripotency associated 4 pseudogene pseudo 320460 Mm.360649 NM_177164 ENSMUSG00000045648 Vwc2l A830006F12Rik|Brl - 1|1 C3 von Willebrand factor C domain-containing protein 2-like protein-coding 105244432 XR_867193 Gm40041 - - 3 B|3 predicted gene, 40041 ncRNA 109379 Lbw2 - - 4 57.9 cM lupus NZB x NZW 2 unknown 110049 Lmr2 - - 9 23.41 cM leishmaniasis resistance 2 unknown 101438 Mm.36878 AA408156 - - - expressed sequence AA408156 unknown 29861 Mm.101885 NM_013874 ENSMUSG00000030584 Dpf1 Neud4 - 7|7 B1 D4, zinc and double PHD fingers family 1 protein-coding 100417672 Gm18753 - - 5|5 G3 RAN guanine nucleotide release factor pseudogene pseudo 791323 Mm.319487 Gm9954 - - - predicted gene 9954 protein-coding 100035651 Iba8 - - 15 39.79 cM induction of brown adipocytes 8 unknown 224105 Mm.234204 NM_177326 ENSMUSG00000022781 Pak2 5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182 - 16 B2|16 22.4 cM p21 (RAC1) activated kinase 2 protein-coding 100379146 Mm.395065 Gm10642 - - 9 D|9 39.53 cM predicted gene 10642 unknown 239647 Mm.130036 NM_172293 ENSMUSG00000044250 Pced1b Fam113b - 15|15 F1 PC-esterase domain containing 1B protein-coding 102633224 XR_001778761 Gm31106 - - 8 E1|8 predicted gene, 31106 ncRNA 100312550 Gm11322 Vmn1r-ps121 - 13|13 A3.1 vomeronasal 1 receptor Vmn1r-ps121 pseudogene pseudo 320879 Mm.375089 NR_040316 ENSMUSG00000097785 B230217O12Rik - - 19|19 D2 RIKEN cDNA B230217O12 gene ncRNA 100418361 Gm19163 - - 13|13 A1 COX11 homolog, cytochrome c oxidase assembly protein pseudogene pseudo 71090 Mm.72588 NM_027670 ENSMUSG00000062224 4933411G06Rik - - 10|10 B3 Sumo1 pseudogene pseudo 112229 Psl1 Tpa - 9 57.46 cM promotion susceptibility QTL 1 unknown 16834 Mm.261620 NM_013581 ENSMUSG00000018661 Cog1 6030445I15|Ldlb|mKIAA1381 - 11|11 E2 component of oligomeric golgi complex 1 protein-coding 21402 Mm.42944 NM_011543 ENSMUSG00000036309 Skp1a 15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1 - 11 B1.3|11 31.86 cM S-phase kinase-associated protein 1A protein-coding 100418347 Gm14677 - - X|X A6 tumor necrosis factor, alpha-induced protein 1 (endothelial) pseudogene pseudo 100504350 Mm.94426 NR_040372 ENSMUSG00000086118 Gm14169 - - 2 H1|2 77.54 cM predicted gene 14169 ncRNA 72821 Mm.229373 NM_001014761 ENSMUSG00000070304 Scn2b 2810451E09Rik|AI840361|Gm183 - 9 A5.2|9 24.84 cM sodium channel, voltage-gated, type II, beta protein-coding 279653 Mm.39738 NM_001105245 ENSMUSG00000051323 Pcdh19 B530002L05Rik|Gm717|mKIAA1313 - X|X E3 protocadherin 19 protein-coding 60830 D12Mit1002 D4Mit78 - 12 61.15 cM DNA segment, Chr 12, Massachusetts Institute of Technology 1002 unknown 102636028 LOC102636028 - - X A7.3 RIKEN cDNA D030056L22 gene pseudogene pseudo 100422783 Gm11786 - - 4 A1|4 1.85 cM cyclin-dependent kinase 6 pseudogene pseudo 102635560 Gm32862 - - 11|11 predicted gene, 32862 ncRNA 100418226 Gm19083 - - X|X C3 sarcoglycan, beta (dystrophin-associated glycoprotein) pseudogene pseudo 100039134 Gm2059 - - 8 C1|8 dpy-30 homolog pseudogene pseudo 320534 Mm.260587 NM_001033393 ENSMUSG00000045980 Tmem104 C630005D06Rik|mFLJ00021 - 11|11 E2 transmembrane protein 104 protein-coding 100041386 Gm3307 - - 7 C|7 high mobility group box 2 pseudogene pseudo 67466 Mm.30709 NM_026176 ENSMUSG00000009030 Pdcl 1200011E13Rik|AW108059|PhLP1 - 2|2 B phosducin-like protein-coding 102633457 XR_001781061 Gm31276 - - 13 D2.2|13 predicted gene, 31276 ncRNA 102631940 LOC102631940 - - 4 E1 60S acidic ribosomal protein P1 pseudogene pseudo 66482 Mm.293510 NM_025588 ENSMUSG00000021357 Exoc2 2410030I24Rik|AI648199|Sec5|Sec5l1 - 13|13 A3.2 exocyst complex component 2 protein-coding 102634899 XR_376982 Gm32374 - - 5 C3.1|5 predicted gene, 32374 ncRNA 228916 Gm14269 - - 2|2 H3 predicted gene 14269 pseudo 171580 Mm.290431 NM_138315 ENSMUSG00000019823 Mical1 MICAL|MICAL-1|Nical - 10|10 B2 microtubule associated monooxygenase, calponin and LIM domain containing 1 protein-coding 667257 Mm.417007 NR_152174 Gm8541 EG667257 - 2|2 C1.3 predicted gene 8541 ncRNA 110120550 LOC110120550 - - - VISTA enhancer mm1571 biological-region 623242 Rps2-ps8 Gm6412 - 17 B1|17 ribosomal protein S2, pseudogene 8 pseudo 216131 Mm.27539 NM_001081055 ENSMUSG00000000374 Trappc10 B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo - 10 C1|10 39.72 cM trafficking protein particle complex 10 protein-coding 102631661 XR_380919 Gm29944 - - 10 D3|10 predicted gene, 29944 ncRNA 102638835 XR_382940 Gm16263 - - 13 D2.3|13 67.17 cM predicted gene 16263 ncRNA 100036425 Capsq2 - - - capsaicin sensitivity related QTL 2 unknown 17219 Mm.4933 NM_008567 ENSMUSG00000026355 Mcm6 ASP-l1|D1Wsu22e|Mcmd6 - 1 E3|1 55.8 cM minichromosome maintenance complex component 6 protein-coding 71941 Mm.196576 NM_024248 ENSMUSG00000056228 Cars2 2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS - 8|8 A1.1 cysteinyl-tRNA synthetase 2 (mitochondrial)(putative) protein-coding 107868 Mm.347376 NM_148943 ENSMUSG00000069044 Usp9y Dffry|Fafl2 - Y|Y A1 ubiquitin specific peptidase 9, Y chromosome protein-coding 21171 T(3;4)5Rk T5Rk - - reciprocal translocation, Chr 3 and 4, Roderick 5 other 69481 Mm.154333 NM_183282 ENSMUSG00000092519 Actl9 1700029I08Rik|AV259599 - 17|17 B1 actin-like 9 protein-coding 107438 Cinda1 - - 11 41.87 cM cytokine induced activation 1 protein-coding 20196 Mm.6523 NM_009113 ENSMUSG00000042312 S100a13 - - 3 F1|3 39.24 cM S100 calcium binding protein A13 protein-coding 105244876 Mm.446782 XR_869490 Gm17089 - - 6 G1|6 64.77 cM predicted gene 17089 ncRNA 18348 Mm.436623 NM_010991 ENSMUSG00000048153 Olfr49 IC6|MOR1181 - 14|14 C2 olfactory receptor 49 protein-coding 69623 Mm.69919 NM_027142 Zfp33b 2310012P17Rik - 5|5 E5 zinc finger protein 33B protein-coding 100124668 NR_130335 ENSMUSG00000094659 Mir466c-2 Mirn466c-2|mmu-mir-466c-2 - 2 A1|2 microRNA 466c-2 ncRNA 78146 7330423F06Rik - - 5|5 RIKEN cDNA 7330423F06 gene protein-coding 78767 Mm.235920 NM_030172 ENSMUSG00000021176 Efcab11 2610021K21Rik|2610110A13Rik - 12|12 E EF-hand calcium binding domain 11 protein-coding 108167598 LOC108167598 - - 1 C2 40S ribosomal protein S2-like pseudo 102636389 Gm28462 - - Y|Y predicted gene 28462 ncRNA 102634730 XR_001780986 LOC102634730 - - 13 B3 uncharacterized LOC102634730 ncRNA 102465176 NR_105764 ENSMUSG00000098273 Mir6346 Gm27829|mmu-mir-6346 - 1|1 E2.3 microRNA 6346 ncRNA 434204 Mm.181641 NM_001004185 ENSMUSG00000045795 Whamm BB081391|Whdc1|mKIAA1971 - 7|7 D3 WAS protein homolog associated with actin, golgi membranes and microtubules protein-coding 76974 Mm.272359 NM_029821 ENSMUSG00000025481 Urah 1190003J15Rik|2810420C16Rik|HIUHase - 7|7 F4 urate (5-hydroxyiso-) hydrolase protein-coding 102631562 XR_376709 Gm29868 - - 5 A1|5 predicted gene, 29868 ncRNA 111818957 LOC111818957 - - - Mthfr promoter region biological-region 22289 Mm.257498 NM_009483 ENSMUSG00000037369 Kdm6a Utx - X A1.2-A1.3|X 13.45 cM lysine (K)-specific demethylase 6A protein-coding 104347 Cpza - - - chlorpromazine avoidance protein-coding 246229 Mm.386883 NM_144558 ENSMUSG00000041684 Bivm AI854267 - 1|1 C1.1 basic, immunoglobulin-like variable motif containing protein-coding 100861824 Gm21247 - - Y|Y predicted gene, 21247 protein-coding 546944 Mm.480274 NM_001166722 ENSMUSG00000094187 Vmn1r170 EG546944|Gm5999 - 7|7 A3 vomeronasal 1 receptor 170 protein-coding 105692 Mm.289934 AW549269 - - - expressed sequence AW549269 protein-coding 13383 Mm.382 NM_007862 ENSMUSG00000022770 Dlg1 B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187 - 16 B2|16 22.4 cM discs large MAGUK scaffold protein 1 protein-coding 71684 Mm.28309 NM_030243 ENSMUSG00000036249 Rbm43 0610033I05Rik - 2|2 C1.1 RNA binding motif protein 43 protein-coding 69852 Mm.57874 NM_053085 ENSMUSG00000006642 Tcf23 2010002O16Rik|Out|bHLHa24 - 5|5 B1 transcription factor 23 protein-coding 67020 Mm.390406 NM_025915 ENSMUSG00000045377 Tmem88 2600017H02Rik - 11|11 B3 transmembrane protein 88 protein-coding 110239 Igh-Src - - - immunoglobulin heavy chain src other 19702 Mm.220955 NM_031193 Ren2 Ren|Ren-2|Ren-B|Rn-2|Rnr - 1 E4|1 renin 2 tandem duplication of Ren1 protein-coding 623191 Gm6407 EG623191 - 10|10 B5.3 ferritin light chain 1 pseudogene pseudo 19065 Mm.57059 NM_008919 ENSMUSG00000048337 Npy4r NYYR-D|Ppyr1|Y4 - 14 B|14 20.8 cM neuropeptide Y receptor Y4 protein-coding 62585 D12Mit178 - - 12 41.59 cM DNA segment, Chr 12, Massachusetts Institute of Technology 178 unknown 627187 Gm14350 - - X|X A1.1 spindlin family, member 2 pseudogene pseudo 102639806 XR_379300 Gm36032 - - 9 A5.1|9 predicted gene, 36032 ncRNA 102636394 Gm26925 - - 5|5 predicted gene, 26925 pseudo 100418412 Gm19193 - - 9|9 E3.3 FCF1 small subunit processome component homolog pseudogene pseudo 100042244 Gm9836 - - 5|5 A3 predicted pseudogene 9836 ncRNA 66104 Mm.336239 NM_025355 ENSMUSG00000031409 Tceal6 1500026B10Rik - X|X F1 transcription elongation factor A (SII)-like 6 protein-coding 97484 Mm.288641 NM_139229 ENSMUSG00000031916 Cog8 BB235941|C87832 - 8|8 D3 component of oligomeric golgi complex 8 protein-coding 66972 Mm.23720 NM_025877 ENSMUSG00000046329 Slc25a23 2310067G05Rik|SCaMC-3 - 17|17 D solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 protein-coding 70439 Mm.181050 NM_027427 ENSMUSG00000020680 Taf15 2610111C21Rik|68kDa|TAFII68|Taf2n - 11|11 C TATA-box binding protein associated factor 15 protein-coding 353373 Mm.424675 NR_002865 Rnu11 MBII-407|Mirn801|mir-801|mmu-mir-801 - 4|4 D2.3 U11 small nuclear RNA snRNA 71903 Mm.442371 NM_001079865 ENSMUSG00000062826 Ces2f 2310038E17Rik|A430088E12 - 8|8 D3 carboxylesterase 2F protein-coding 75069 Mm.50378 NR_040632 4930515L03Rik - - 2|2 A3 RIKEN cDNA 4930515L03 gene ncRNA 100862288 Gm21620 - - X A3.3|X predicted gene, 21620 pseudo 104408 Hsp84-2 84kDa|Hsp90|hsp2 - - heat shock protein, 2 protein-coding 100043158 Gm4271 - - 17|17 B1 h-2 class I histocompatibility antigen, Q10 alpha chain-like pseudo 100504594 Mm.447008 NR_045367 ENSMUSG00000055110 A630012P03Rik - - X|X A5 RIKEN cDNA A630012P03 gene ncRNA 100416013 Gm17871 - - 7|7 D3 cathepsin A pseudogene pseudo 20661 Mm.157119 NM_019972 ENSMUSG00000068747 Sort1 2900053A11Rik|AI852375|Ntr3|Ntsr3 - 3|3 F2.3-F3 sortilin 1 protein-coding 109679 Ppr1 P60|Ppr-1 - - plasma protein 1 protein-coding 17140 Mm.377097 NM_020280 ENSMUSG00000033343 Magea4 Mage-a4 - X A7.3|X 37.2 cM melanoma antigen, family A, 4 protein-coding 61683 D6Mit277 - - 6 26.94 cM DNA segment, Chr 6, Massachusetts Institute of Technology 277 unknown 93921 D16Jhu60 207K21.SP6 - - DNA segment, Chr 16, Johns Hopkins University 60 unknown 53042 CA7.12 - - - DNA segment, CA7.12 unknown 100418446 Gm19218 - - 19|19 A COP9 (constitutive photomorphogenic) homolog, subunit 8 pseudogene pseudo 627139 Gm6734 EG627139 - 14|14 A1 high mobility group box 2 pseudogene pseudo 104189 Lpn3 LN-3|Lpn-3 - - NZ lupus nephritis 3 protein-coding 100043278 Gm4332 - - 3 G1|3 ribosomal protein S20 pseudogene pseudo 619916 Mm.304472 Ighv1-72 Gm16709|Ighv186-1 - 12|12 F2 immunoglobulin heavy variable 1-72 other 433216 Gm5510 EG433216 - 19|19 A predicted pseudogene 5510 pseudo 114719 Skull11 QTL-S8.1 - 8 32.3 cM skull morphology 11 unknown 100125296 Chldq6 - - - cholesterol and HDL QTL 6 unknown 100504388 Kat2b-ps EG330129|Gm5109|Pcaf-ps - 5|5 E2 K(lysine) acetyltransferase 2B, pseudogene pseudo 258106 Olfr443-ps1 MOR261-8P - 6|6 B2.1 olfactory receptor 443, pseudogene 1 pseudo 100417387 Gm12636 - - 4|4 C5 ubiquitin specific peptidase 46 pseudogene pseudo 73986 4930442G10Rik - - 12|12 RIKEN cDNA 4930442G10 gene protein-coding 620853 Gm6187 EG620853 - 1|1 A2 predicted gene 6187 pseudo 242603 Mm.257231 NM_172873 ENSMUSG00000047636 Cdcp2 D030010E02Rik - 4|4 C7 CUB domain containing protein 2 protein-coding 105242599 XR_868802 Gm38767 - - 6 A1|6 predicted gene, 38767 ncRNA 52534 D10Ertd140e - - 10 30.6 cM DNA segment, Chr 10, ERATO Doi 140, expressed unknown 16149 Mm.439737 NM_010545 ENSMUSG00000024610 Cd74 CLIP|DHLAG|HLADG|Ia-GAMMA|Ii - 18 E1|18 34.41 cM CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) protein-coding 110120420 LOC110120420 - - - VISTA enhancer mm1045 biological-region 101180908 LOC101180908 - - 2 E5 fatty acid binding protein 5, epidermal pseudogene pseudo 102639625 XR_381292 Gm35890 - - 12 A1.1|12 predicted gene, 35890 ncRNA 67914 Mm.169234 NM_026452 ENSMUSG00000031782 Coq9 2310005O14Rik|C78387 - 8|8 C5 coenzyme Q9 protein-coding 111842 Iapls3-11 - - - intracisternal A particle, lymphocyte specific 3-11 other 105242590 XR_868765 Gm38760 - - 6 A1|6 predicted gene, 38760 ncRNA 360130 Gnb1-ps2 - - 14 E2.1|14 47.58 cM guanine nucleotide binding protein (G protein), beta 1, pseudogene 2 pseudo 102633300 XR_878528 Gm31159 - - 1 E4|1 predicted gene, 31159 ncRNA 100861570 NR_046304 ENSMUSG00000084549 DQ267100 - - 12 F1|12 snoRNA DQ267100 snoRNA 13641 Mm.3374 NM_010110 ENSMUSG00000031217 Efnb1 Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1 - X C3|X 43.22 cM ephrin B1 protein-coding 102465624 NR_105998 ENSMUSG00000099063 Mir7031 Gm27859|mmu-mir-7031 - 5|5 F microRNA 7031 ncRNA 101055947 Gm29316 - - Y|Y predicted gene 29316 protein-coding 100316821 NR_035502 ENSMUSG00000088559 Mir1981 mir-1981|mmu-mir-1981 - 1 H5|1 89.13 cM microRNA 1981 ncRNA 108167684 XR_001779301 LOC108167684 - - 9 F1 uncharacterized LOC108167684 ncRNA 100041698 Gm20883 - - Y|Y predicted gene, 20883 protein-coding 102638839 XR_383481 Gm35307 - - 14 D1|14 predicted gene, 35307 ncRNA 68051 Mm.455474 NM_026532 ENSMUSG00000008450 Nutf2 2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15 - 8 D3|8 53.05 cM nuclear transport factor 2 protein-coding 76375 Mm.250541 NM_029585 ENSMUSG00000030610 Det1 2610034H20Rik - 7|7 D2 de-etiolated homolog 1 (Arabidopsis) protein-coding 258230 Olfr573-ps1 MOR10-3P|MOR10-4 - 7|7 E3 olfactory receptor 573, pseudogene 1 pseudo 100418438 Gm19213 - - 2|2 F1 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 pseudogene pseudo 102635395 XR_380534 Gm32748 - - 10 B5.2|10 predicted gene, 32748 ncRNA 100312553 Vmn1r-ps124 - - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 124 pseudo 100035304 Scgq2 Scg-2 - 1 47.76 cM spontaneous crescentic glomerulonephritis QTL 2 unknown 271711 Mm.80318 NM_175564 ENSMUSG00000026188 Tmem169 A830020B06Rik - 1|1 C3 transmembrane protein 169 protein-coding 63873 Mm.266450 NM_022017 ENSMUSG00000014158 Trpv4 0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC - 5|5 F transient receptor potential cation channel, subfamily V, member 4 protein-coding 102467633 n-TMcat12 n-Tm12 - 13 A3.1|13 nuclear encoded tRNA methionine 12 (anticodon CAT) tRNA 76865 4930408K08Rik - - 3|3 RIKEN cDNA 4930408K08 gene protein-coding 231151 Mm.421558 NM_001170454 ENSMUSG00000029196 Tada2b AA474455|Gm145 - 5|5 B3 transcriptional adaptor 2B protein-coding 62192 D15Mit61 - - 15 24.73 cM DNA segment, Chr 15, Massachusetts Institute of Technology 61 unknown 53695 D3Tu51 D0Tu51|D17Tu51 - - DNA segment, Chr 3, Tubingen 51 unknown 62351 D1Mit362 - - 1 94.35 cM DNA segment, Chr 1, Massachusetts Institute of Technology 362 unknown 100503240 Mm.387258 NM_001195579 ENSMUSG00000072934 Trpc5os Gm15070 - X F2|X transient receptor potential cation channel, subfamily C, member 5, opposite strand protein-coding 19354 Mm.1972 NM_009008 ENSMUSG00000033220 Rac2 AI323801|AI452260 - 15|15 E1 Rac family small GTPase 2 protein-coding 60798 D3Mit76 - - 3 40.74 cM DNA segment, Chr 3, Massachusetts Institute of Technology 76 unknown 102633311 Mm.333484 NR_153819 Gm31108 Gm31169 - 6 G3|6 predicted gene, 31108 ncRNA 665971 Gm20780 - - Y|Y A1 predicted gene, 20780 pseudo 75612 Mm.207683 NM_029364 ENSMUSG00000034707 Gns 2610016K11Rik|AU042285|C87209|G6S|N28088 - 10|10 D2 glucosamine (N-acetyl)-6-sulfatase protein-coding 231858 Mm.33766 NM_178702 ENSMUSG00000029576 Radil AI536456|D930005D10Rik - 5|5 G2 Ras association and DIL domains protein-coding 105243038 XR_869893 Gm39075 Gm45152 - 7 F1|7 predicted gene, 39075 ncRNA 320138 Mm.483525 NM_177080 A130050O07Rik - - 1|1 E4 RIKEN cDNA A130050O07 gene unknown 100417978 Gm18930 - - 15|15 D3 TOX high mobility group box family member 4 pseudogene pseudo 108167695 Gm20620 - - 9 B|9 31.79 cM 40S ribosomal protein S29 pseudogene pseudo 100416220 Gm16585 - - 1|1 H4 ribosomal protein S8 pseudogene pseudo 664783 Mm.482575 NM_001081954 Dux AW822073|Dux4|Duxbl|EG664783 - 10 B4|10 double homeobox protein-coding 111611 Xmv35 Xmv-35 - - xenotropic murine leukemia virus 35 other 105245743 XR_874576 Gm41142 - - 14 C1|14 predicted gene, 41142 ncRNA 435570 Gm5690 EG435570 - 18 E2|18 ribosomal protein L10A pseudogene pseudo 26920 Mm.231332 NM_012018 ENSMUSG00000057110 Cntrl 6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo - 2|2 B centriolin protein-coding 100502712 Mm.483756 Gm19335 - - 1|1 34.22 cM predicted gene, 19335 unknown 67507 Mm.27027 NM_026208 ENSMUSG00000026931 1700019N19Rik - - 19|19 D2 RIKEN cDNA 1700019N19 gene protein-coding 330599 Mm.406608 NR_045969 Gm16938 - - 7|7 E1 predicted gene, 16938 ncRNA 67223 Mm.289841 NM_026041 ENSMUSG00000001305 Rrp15 2810430M08Rik|5430437H21Rik - 1|1 H5 ribosomal RNA processing 15 homolog (S. cerevisiae) protein-coding 14359 Mm.259021 NM_008053 ENSMUSG00000027680 Fxr1 1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p - 3|3 A3 fragile X mental retardation gene 1, autosomal homolog protein-coding 319553 A330058E17Rik - - 5|5 RIKEN cDNA A330058E17 gene protein-coding 218490 Mm.371688 NM_145455 ENSMUSG00000021660 Btf3 1700054E11Rik - 13|13 D1 basic transcription factor 3 protein-coding 258739 Mm.377667 NM_146744 ENSMUSG00000051258 Olfr1362 MOR256-8|Olfr1363-ps1 - 13|13 A3.1 olfactory receptor 1362 protein-coding 547091 Gm6020 EG547091|mszf72 - 19|19 D3 predicted gene 6020 pseudo 619996 Gm6122 EG619996 - 14|14 A2 aldo-keto reductase family 1, member B3 pseudogene pseudo 17535 Mm.149071 NM_018736 ENSMUSG00000031928 Mre11a Mre11|Mre11b - 9|9 A2 MRE11A homolog A, double strand break repair nuclease protein-coding 109900 Mm.23869 NM_133768 ENSMUSG00000025533 Asl 2510006M18Rik|ASAL - 5 G1.3|5 68.37 cM argininosuccinate lyase protein-coding 100041823 Gm3531 - - 1 D|1 basic transcription factor 3 pseudogene pseudo 105242837 Gm38936 - - 11|11 predicted gene, 38936 ncRNA 56844 Mm.139675 NM_020285 ENSMUSG00000045752 Tssc4 AA241958|ESTM671070 - 7 F5|7 88.11 cM tumor-suppressing subchromosomal transferable fragment 4 protein-coding 225638 Mm.296528 NM_001037294 ENSMUSG00000032845 Alpk2 Gm549|Hak - 18|18 E1 alpha-kinase 2 protein-coding 382692 Mm.379534 Ighv1-19 Gm16855 - 12|12 F2 immunoglobulin heavy variable V1-19 other 230577 Mm.134029 NM_172272 ENSMUSG00000043572 Pars2 BC027073 - 4|4 C7 prolyl-tRNA synthetase (mitochondrial)(putative) protein-coding 108168072 XR_001780883 Gm46406 - - 13 A3.1|13 predicted gene, 46406 ncRNA 102638032 Gm28471 - - Y|Y predicted gene 28471 protein-coding 613117 Mm.488109 4930571B16Rik - - - RIKEN cDNA 4930571B16 gene protein-coding 61510 D8Mit122 - - 8 74.59 cM DNA segment, Chr 8, Massachusetts Institute of Technology 122 unknown 111931 Iap3rc11 - - - intracisternal A-type particle, U3 region, SINE repeat c-11 other 102640766 Gm28136 - - Y|Y predicted gene 28136 ncRNA 105244498 Gm40095 - - 3 F2.1|3 metallothionein-2 pseudogene pseudo 666621 Gm8194 EG666621 - 14 C1|14 ribosomal protein S2 pseudogene pseudo 246740 Renf1 - - - renal failure 1 unknown 257991 Olfr334-ps1 MOR137-1P - 2|2 B olfactory receptor 334, pseudogene 1 pseudo 100041224 XM_001476000 Gm3213 - - 10 A1|10 predicted gene 3213 protein-coding 100035927 Nhdlq10 - - - non-HDL QTL 10 unknown 102637413 XR_389370 Gm34226 - - 5 E3|5 predicted gene, 34226 ncRNA 387176 NR_029568 ENSMUSG00000065423 Mir181a-2 Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2 - 2 B|2 microRNA 181a-2 ncRNA 22367 Mm.2981 NM_011705 ENSMUSG00000021115 Vrk1 51PK - 12|12 E-F1 vaccinia related kinase 1 protein-coding 546667 Gm15554 EG546667 - 16|16 C3.1 predicted gene 15554 pseudo 100035773 Lvic4 - - - liver iron content 4 unknown 100417026 Gm18369 - - 14|14 E4 mortality factor 4 like 1 pseudogene pseudo 633695 Gm11855 - - 4|4 A2 mutS homolog 6 pseudogene pseudo 61829 D2Mit324 - - 2 33.33 cM DNA segment, Chr 2, Massachusetts Institute of Technology 324 unknown 78485 2200007N16Rik - - 7|7 RIKEN cDNA 2200007N16 gene protein-coding 103841 Mm.374846 NM_198013 ENSMUSG00000018378 Cuedc1 AI841487|C330016O16Rik - 11|11 C CUE domain containing 1 protein-coding 100417266 LOC100417266 - - 3|3 D armadillo repeat containing 10 pseudogene pseudo 100217447 Mm.453532 NR_028544 ENSMUSG00000112285 Scarna3b MBI-100 - 12 C3|12 small Cajal body-specific RNA 3B ncRNA 76041 Mm.23977 NM_183115 ENSMUSG00000048924 Ccdc125 5830436D01Rik|AL023012 - 13|13 D1 coiled-coil domain containing 125 protein-coding 110213 Mm.16769 NM_026669 ENSMUSG00000023010 Tmbim6 5031406P05Rik|Bi1|Tegt - 15 F1|15 56.13 cM transmembrane BAX inhibitor motif containing 6 protein-coding 70152 Mm.488086 NM_027334 ENSMUSG00000054619 Mettl7a1 2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1 - 15|15 F1 methyltransferase like 7A1 protein-coding 100046296 Gm20941 - - X A3.2|X predicted gene, 20941 pseudo 80749 Mm.483073 NM_030562 ENSMUSG00000030600 Lrfn1 BC004018|SALM2|Semo1 - 7|7 B1 leucine rich repeat and fibronectin type III domain containing 1 protein-coding 102640842 XR_392603 ENSMUSG00000101533 Gm29393 CH36-145F11.1|CH36-154N11.5 - Y E|Y predicted gene 29393 ncRNA 100417429 Gm12998 - - 4|4 D1 general transcription factor IIB pseudogene pseudo 108167778 Gm46196 - - 10 A1|10 predicted gene, 46196 pseudo 433955 Gm5564 EG433955 - 5 G2|5 mortality factor 4 like 1 pseudogene pseudo 381438 Mm.490549 NM_198657 ENSMUSG00000058174 Gm5148 EG381438 - 3 B|3 predicted gene 5148 protein-coding 735268 NR_030447 ENSMUSG00000076212 Mir680-1 Mirn680-1 - 6 F3|6 microRNA 680-1 ncRNA 75361 Mm.385732 NR_126459 4930555K05Rik - - 13|13 C1 RIKEN cDNA 4930555K05 gene ncRNA 102636830 XR_001781331 Gm33790 - - 14 D2|14 predicted gene, 33790 ncRNA 100415768 Gm15304 - - 8|8 A2 zinc finger, MYM-type 5 pseudogene pseudo 630355 Gm7031 EG630355 - 17|17 B1 predicted gene 7031 pseudo 234069 Mm.103427 NM_178708 ENSMUSG00000038542 Pcid2 A730042J05Rik - 8|8 A1.1 PCI domain containing 2 protein-coding 102639065 XR_383484 Gm35468 - - 14 D1|14 predicted gene, 35468 ncRNA 100043809 XM_001480992 Frg2f11 Gm4663 - 14 E2.3|14 FSHD region gene 2 family member 11 protein-coding 102631750 XR_389708 Gm30011 - - 3 B|3 predicted gene, 30011 ncRNA 102637886 XR_382304 Gm34582 - - 13 A5|13 predicted gene, 34582 ncRNA 74661 Mm.444666 XR_373443 Pard3bos1 4930448K12Rik - 1|1 C2 par-3 family cell polarity regulator beta, opposite strand 1 unknown 111800 Iapls3-26 - - - intracisternal A particle, lymphocyte specific 3-26 other 623094 Gm6392 EG623094 - 15|15 D1 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 14613 Mm.281816 NM_008121 ENSMUSG00000057123 Gja5 5730555N10Rik|Cnx40|Cx40|Gja-5 - 3 F2.1|3 42.04 cM gap junction protein, alpha 5 protein-coding 226251 Mm.217161 NM_178688 ENSMUSG00000025085 Ablim1 2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059 - 19 D2|19 52.09 cM actin-binding LIM protein 1 protein-coding 108168930 XR_001784246 Gm46845 - - 4 A1|4 predicted gene, 46845 ncRNA 59014 Mm.29061 NM_021511 ENSMUSG00000061024 Rrs1 5730466A07Rik|AA415037|D1Ertd701e|Rrr - 1 A2|1 2.08 cM ribosome biogenesis regulator 1 protein-coding 66821 Mm.358700 NM_025784 ENSMUSG00000026172 Bcs1l 9130022O19Rik - 1|1 C3 BCS1-like (yeast) protein-coding 105244119 Gm13536 - - 2|2 22.46 cM predicted gene 13536 ncRNA 60799 D3Mit89 - - 3 80.79 cM DNA segment, Chr 3, Massachusetts Institute of Technology 89 unknown 102639207 Gm35568 - - 11|11 predicted gene, 35568 ncRNA 68126 Mm.288676 NM_029629 ENSMUSG00000027371 Fahd2a 1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2 - 2|2 F1 fumarylacetoacetate hydrolase domain containing 2A protein-coding 239743 Mm.86699 NM_183390 ENSMUSG00000043008 Klhl6 - - 16|16 A3 kelch-like 6 protein-coding 18008 Mm.331129 NM_016701 ENSMUSG00000004891 Nes AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2 - 3 F1|3 38.78 cM nestin protein-coding 330283 Mm.242174 Plxna4os2 9430029A11Rik - 6|6 A3.3 plexin A4, opposite strand 2 unknown 52797 D4Ag2e - - - DNA segment, Chr 4, Applied Genetics Laboratories, Inc-2 expressed unknown 100415997 Gm14348 - - X|X A1.1 predicted gene 14348 pseudo 102640103 LOC102640103 - - 2 F1 protein transport protein Sec61 subunit gamma pseudogene pseudo 100416477 Gm3854 100042459 - 7|7 A1 zinc finger protein 72 pseudogene pseudo 230234 Mm.268148 NM_001081420 ENSMUSG00000038827 Fam206a simiate - 4|4 B3 family with sequence similarity 206, member A protein-coding 109359 Mm.274824 NM_198017 ENSMUSG00000030965 Abraxas2 AA589499|AI853413|Abro1|C430003P19Rik|Fam175b - 7|7 F3 BRISC complex subunit protein-coding 76758 Mm.159149 NM_029727 ENSMUSG00000017211 Gsdma2 2200001G21Rik|2210006M16Rik|2210009F20Rik|2210411P14Rik|Gsdm2|Gsdml2 - 11|11 D gasdermin A2 protein-coding 622037 Mm.126243 NR_045334 ENSMUSG00000111658 B930092H01Rik - - 9|9 B RIKEN cDNA B930092H01 gene ncRNA 62766 D16Mit184 - - 16 33.65 cM DNA segment, Chr 16, Massachusetts Institute of Technology 184 unknown 102633997 XR_383893 Gm31687 - - 15 B1|15 predicted gene, 31687 ncRNA 105246294 XR_876871 Gm41598 - - 17 C|17 predicted gene, 41598 ncRNA 105245027 Mm.401933 XR_870981 ENSMUSG00000097677 Gm26611 - - 9 E3.1|9 predicted gene, 26611 ncRNA 670921 Gm16471 EG668316 - X|X D predicted gene 16471 pseudo 111730 Iapt18 - - - intracisternal A particle, tumor specific 18 other 259095 Mm.377838 NM_147091 ENSMUSG00000073965 Olfr568 MOR14-11|MOR14-3 - 7|7 E3 olfactory receptor 568 protein-coding 100502888 Mm.437844 NR_040296 ENSMUSG00000108239 Gm19434 - - 6 G1|6 66.0 cM predicted gene, 19434 ncRNA 60599 Mm.393018 NM_021897 ENSMUSG00000028211 Trp53inp1 2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1 - 4|4 A1 transformation related protein 53 inducible nuclear protein 1 protein-coding 100503642 Gm19810 - - 10|10 39.72 cM 40S ribosomal protein S21-like pseudo 20317 Mm.2044 NM_011340 ENSMUSG00000000753 Serpinf1 AI195227|EPC-1|Pedf|Pedfl|Sdf3 - 11|11 B5 serine (or cysteine) peptidase inhibitor, clade F, member 1 protein-coding 78567 9630003H22Rik - - 11|11 RIKEN cDNA 9630003H22 gene protein-coding 100041167 Gm14382 - - 7|7 E3 predicted gene 14382 pseudo 100040846 Mm.386902 NM_177177 5930403N24Rik Gm16524 - 10|10 B1 RIKEN cDNA 5930403N24 gene ncRNA 20856 Mm.32506 NM_011491 ENSMUSG00000020303 Stc2 AW125853|Stc-2|Stc2l|mustc2 - 11|11 A4 stanniocalcin 2 protein-coding 102640413 XR_389942 Gm36478 - - 6 G3|6 predicted gene, 36478 ncRNA 98205 AA516603 - - - expressed sequence AA516603 unknown 234673 Mm.441134 NM_172759 ENSMUSG00000031886 Ces2e 9030624L02Rik|Ces5 - 8|8 D3 carboxylesterase 2E protein-coding 665816 Gm7803 EG665816 - X A5|X heterogeneous nuclear ribonucleoprotein F pseudogene pseudo 105244455 XR_867329 Gm37035 - - 3 D-E1|3 predicted gene, 37035 ncRNA 75868 Mm.445952 4930588A03Rik - - 18|18 RIKEN cDNA 4930588A03 gene protein-coding 666518 Gm8145 EG666518 - 5|5 E5 predicted gene 8145 pseudo 23948 Mm.42047 NM_011846 ENSMUSG00000029436 Mmp17 MT4-MMP|MT4MMP|MTMMP4 - 5 G1.3|5 68.18 cM matrix metallopeptidase 17 protein-coding 66627 Mm.7050 NM_025671 ENSMUSG00000023707 Ogfod2 1300006G11Rik|5730405M13Rik|AU041636|AW552395 - 5|5 F 2-oxoglutarate and iron-dependent oxygenase domain containing 2 protein-coding 111306 Hmgn1-rs11 Hmg14-rs11 - - high mobility group nucleosomal binding domain 1, related sequence 11 pseudo 14294 Mm.378918 NM_008042 ENSMUSG00000079700 Fpr3 ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r - 17|17 A3.2 formyl peptide receptor 3 protein-coding 232164 Mm.404420 NM_146169 ENSMUSG00000045896 Paip2b - - 6|6 C3 poly(A) binding protein interacting protein 2B protein-coding 268807 Mm.124498 NM_177755 ENSMUSG00000022357 Klhl38 8230402K04Rik - 15|15 D1 kelch-like 38 protein-coding 668890 Gm9419 EG668890 - 3|3 H2 BCL2/adenovirus E1B interacting protein 3 pseudogene pseudo 66574 2510017J16Rik - - 5|5 RIKEN cDNA 2510017J16 gene protein-coding 215900 Mm.34479 NM_175449 ENSMUSG00000046031 Fam26f A630077B13Rik|Calhm6 - 10|10 B1 family with sequence similarity 26, member F protein-coding 72092 Mm.440556 2010320H13Rik - - - RIKEN cDNA 2010320H13 gene unknown 100035615 Bwtq8 - - - body weight QTL 8 unknown 70480 Mm.270632 5730407M17Rik - - 2|2 B RIKEN cDNA 5730407M17 gene protein-coding 105244110 XR_866109 Gm39783 - - 2 B|2 predicted gene, 39783 ncRNA 258242 Mm.377388 NM_207141 ENSMUSG00000063176 Olfr955 MOR171-34|MOR171-50 - 9|9 A5.1 olfactory receptor 955 protein-coding 258282 Mm.222982 NM_146285 ENSMUSG00000058513 Olfr801 MOR110-10 - 10|10 D3 olfactory receptor 801 protein-coding 100862250 Gm21588 - - Y|Y predicted gene, 21588 protein-coding 100036183 Lmr13 - - 18 23.86 cM leishmaniasis resistance 13 unknown 105246002 Gm41369 - - 15|15 predicted gene, 41369 ncRNA 105244788 XR_868570 Gm40338 - - 5 G2|5 predicted gene, 40338 ncRNA 105243906 XR_865352 Gm39626 - - 1 B|1 predicted gene, 39626 ncRNA 100036322 Tsiq2 Tsi2 - 19 29.06 cM T cell secretion of IL4 QTL 2 unknown 21430 tch - - - tich unknown 17726 TrnA - - - tRNA tRNA 381564 Gm1667 - - 4|4 D3 predicted gene 1667 protein-coding 108133 Rps6ka2a 90kDa - - ribosomal protein S6 kinase, polypeptide 2, D17Leh66a region protein-coding 100043125 NM_001101657 ENSMUSG00000089722 Cd300ld5 Gm11711 - 11|11 E2 CD300 molecule like family member D5 protein-coding 104219 Ly13 Ly-13 - - lymphocyte antigen 13 protein-coding 74470 Mm.73234 NM_028959 ENSMUSG00000021572 Cep72 2610029E11Rik|4933440J22Rik - 13|13 C1 centrosomal protein 72 protein-coding 102634348 LOC102634348 - - 6 F2 28S ribosomal protein S21, mitochondrial pseudogene pseudo 20290 Mm.1283 NM_011329 ENSMUSG00000020702 Ccl1 BF534335|I-309|P500|Scya1|Tca-3|Tca3 - 11 C|11 49.99 cM chemokine (C-C motif) ligand 1 protein-coding 269553 Mrpl48-ps - - 4|4 C4 mitochondrial ribosomal protein L48 pseudogene pseudo 102638504 XR_001781278 Mipepos Gm15919 - 14 D1|14 31.94 cM mitochondrial intermediate peptidase, opposite strand ncRNA 73491 Mm.444286 1700085D07Rik - - 15|15 RIKEN cDNA 1700085D07 gene protein-coding 104318 Mm.216227 NM_027874 ENSMUSG00000025162 Csnk1d 1200006A05Rik|AA409348|D930010H05Rik - 11|11 E2 casein kinase 1, delta protein-coding 22003 Mm.121878 NM_024427 ENSMUSG00000032366 Tpm1 AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM - 9 C|9 36.27 cM tropomyosin 1, alpha protein-coding 100040976 Gm3072 - - 14 B|14 predicted gene 3072 protein-coding 414105 Mm.335610 NM_001001499 4732465J04Rik - - 10|10 C2 RIKEN cDNA 4732465J04 gene unknown 73010 Mm.441517 NM_175191 ENSMUSG00000044067 Gpr22 2900068K05Rik|AW061316 - 12|12 A3 G protein-coupled receptor 22 protein-coding 66887 Mm.324550 NM_025827 ENSMUSG00000047866 Lonp2 1300002A08Rik|AU015403|Lonp - 8|8 C3 lon peptidase 2, peroxisomal protein-coding 100035449 Ctpr1 - - - citalopram responsiveness 1 unknown 102636544 Gm33580 - - 6|6 predicted gene, 33580 ncRNA 102814 AW821994 - - - expressed sequence AW821994 unknown 106988 AU022049 - - - expressed sequence AU022049 unknown 492951 Chol7 - - 1 63.32 cM cholesterol 7 unknown 56294 Mm.325643 NM_019651 ENSMUSG00000032290 Ptpn9 MEG2 - 9|9 B protein tyrosine phosphatase, non-receptor type 9 protein-coding 106344 Mm.386835 NM_145480 ENSMUSG00000022881 Rfc4 A1|AI894123|AU040575|RFC37 - 16|16 B1 replication factor C (activator 1) 4 protein-coding 67712 Mm.293635 NM_026331 ENSMUSG00000034248 Slc25a37 1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin - 14|14 D2 solute carrier family 25, member 37 protein-coding 57875 Mm.196189 NM_020581 ENSMUSG00000002289 Angptl4 Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158 - 17|17 B1 angiopoietin-like 4 protein-coding 102635701 Gm32972 - - 8|8 predicted gene, 32972 ncRNA 108169125 XR_001785075 Gm46947 - - 5 E5|5 predicted gene, 46947 ncRNA 258630 Mm.377601 NM_146637 ENSMUSG00000075148 Olfr1141 MOR177-10 - 2|2 D olfactory receptor 1141 protein-coding 109075 Mm.322752 NM_175399 ENSMUSG00000034259 Exosc4 1110039I09Rik|1500001N04Rik|Rrp41 - 15|15 D3 exosome component 4 protein-coding 216197 Mm.334999 NM_175451 ENSMUSG00000046841 Ckap4 5630400A09Rik|CLIMP-63|P63 - 10|10 C1 cytoskeleton-associated protein 4 protein-coding 73806 Mm.396549 NR_040543 ENSMUSG00000086923 4930406D18Rik - - 3|3 F2.2 RIKEN cDNA 4930406D18 gene ncRNA 22697 Mm.2760 NM_011757 ENSMUSG00000037017 Zscan21 AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1 - 5 G2|5 76.96 cM zinc finger and SCAN domain containing 21 protein-coding 102635681 XR_375021 Gm14064 - - 2 F3|2 68.0 cM predicted gene 14064 ncRNA 102642523 LOC102642523 - - - uncharacterized LOC102642523 ncRNA 102635546 Gm32852 - - 13|13 predicted gene, 32852 ncRNA 328699 Mm.451970 NM_001081190 ENSMUSG00000074991 Gabrr3 - - 16|16 C1.3 gamma-aminobutyric acid (GABA) receptor, rho 3 protein-coding 258268 Mm.377402 NM_146271 ENSMUSG00000063867 Olfr1511 MOR223-9 - 14|14 C2 olfactory receptor 1511 protein-coding 414111 Mm.417638 NR_040717 ENSMUSG00000106464 C130083M11Rik - - 5 C1|5 RIKEN cDNA C130083M11 gene ncRNA 53031 91E7R - - - DNA segment, 91E7R unknown 103213 Mm.436686 NM_134000 ENSMUSG00000019842 Traf3ip2 AI429613|Act1|CIKS - 10|10 B1 TRAF3 interacting protein 2 protein-coding 97595 C78297 - - - expressed sequence C78297 unknown 16374 Is(1;11)2H Is2H - - insertion, Chr 1 and 11, Harwell 2 other 67621 Mm.45533 NM_026279 ENSMUSG00000028545 Bend5 2310026E23Rik - 4|4 D1 BEN domain containing 5 protein-coding 100124686 Trbv21 Gm16778|Tcrb-V19 - 6 19.3 cM|6 B1 T cell receptor beta, variable 21 other 331424 Mm.127263 NM_177916 ENSMUSG00000071753 C230004F18Rik - - X|X A6 RIKEN cDNA C230004F18 gene ncRNA 71889 Mm.248620 NM_027984 ENSMUSG00000010080 Epn3 2310022G12Rik - 11|11 D epsin 3 protein-coding 77088 3010031K01Rik - - 8|8 RIKEN cDNA 3010031K01 gene protein-coding 328233 Mm.441399 C230040D14 - - 13|13 A5 uncharacterized protein C230040D14 protein-coding 723824 NR_029754 ENSMUSG00000065553 Mir103-1 Mirn103-1|mir-103-1 - 11|11 A4 microRNA 103-1 ncRNA 79456 Mm.18373 NM_058214 ENSMUSG00000033762 Recql4 RecQ4 - 15|15 D3 RecQ protein-like 4 protein-coding 73563 Mm.444294 NR_126429 ENSMUSG00000084804 1700095J12Rik - - 4|4 D3 RIKEN cDNA 1700095J12 gene ncRNA 27759 D2Abb1e - - 11 46.74 cM DNA segment, Chr 2, Abbott 1 expressed unknown 791071 NR_030421 ENSMUSG00000076459 Mir758 Mirn758|mir-758|mmu-mir-758 - 12 F1|12 microRNA 758 ncRNA 77544 8030479D07Rik - - 2|2 RIKEN cDNA 8030479D07 gene protein-coding 60872 D1Mit1013 D6Mit73 - 1 20.39 cM DNA segment, Chr 1, Massachusetts Institute of Technology 1013 unknown 100125845 Tbqt4 - - - tibia bone quality traits 4 unknown 100862420 LOC100862420 - - - zinc finger protein 665-like pseudo 258955 Mm.223350 NM_146953 ENSMUSG00000062712 Olfr531 MOR251-3 - 7|7 F4 olfactory receptor 531 protein-coding 105244090 XR_865990 Gm39764 - - 2 A3|2 predicted gene, 39764 ncRNA 100040624 Gm13756 - - 2|2 C3 predicted gene 13756 pseudo 100628622 NR_039543 ENSMUSG00000105399 Mir1843b mir-1843b|mmu-mir-1843b - 1 H1|1 69.03 cM microRNA 1843b ncRNA 100313511 Mm.479777 Gm10306 - - 4 C5|4 43.33 cM predicted gene 10306 unknown 71957 Mm.475640 NM_028020 ENSMUSG00000029034 Ints11 2410006F12Rik|AU044035|Cpsf3l - 4 E2|4 87.66 cM integrator complex subunit 11 protein-coding 258726 Mm.377659 NM_146731 ENSMUSG00000073950 Olfr599 MOR23-1 - 7|7 E3 olfactory receptor 599 protein-coding 674052 Ps-modr4 - - 14|14 cDNA sequence BC003331 pseudogene pseudo 27939 D4Nds2 - - 4 57.9 cM DNA segment, Chr 4, Nuffield Department of Surgery 2 unknown 67118 Mm.223689 NM_025653 ENSMUSG00000022684 Bfar 3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47 - 16|16 A1 bifunctional apoptosis regulator protein-coding 17606 Ms24 MMS24 - - minisatellites detected by probe MMS24 other 102640156 Gm36291 - - 12|12 predicted gene, 36291 ncRNA 320671 Mm.246736 NM_177223 D130079A08Rik - - 14|14 E2.3 RIKEN cDNA D130079A08 gene unknown 11699 Mm.2197 NM_007443 ENSMUSG00000028356 Ambp AI194774|ASPI|HI-30|Intin4|Itil|UTI - 4 B3|4 33.96 cM alpha 1 microglobulin/bikunin protein-coding 102636151 Mm.321976 NR_155349 ENSMUSG00000115367 Gm33301 - - 15 B3.1|15 predicted gene, 33301 ncRNA 102465604 NR_105965 ENSMUSG00000098651 Mir6999 Gm27673|mmu-mir-6999 - 2|2 E1 microRNA 6999 ncRNA 213051 Gm4781 EG213051 - 10|10 D1 THO complex 4 pseudogene pseudo 100041509 Gm3379 - - 12 F1|12 ribosomal protein 10 pseudogene pseudo 52554 D11Ertd134e - - - DNA segment, Chr 11, ERATO Doi 134, expressed unknown 100417138 Gm18419 - - 17|17 E1.1 enolase 1, alpha non-neuron pseudogene pseudo 258587 Mm.377580 NM_146594 ENSMUSG00000070875 Olfr1100 MOR206-4 - 2|2 D olfactory receptor 1100 protein-coding 101055913 LOC101055913 - - 11 D small ubiquitin-like modifier 2 pseudogene pseudo 102631657 Gm29941 - - 2|2 predicted gene, 29941 ncRNA 100043696 Gm11450 - - 2|2 H2 predicted gene 11450 protein-coding 22756 Mm.295762 NM_009568 ENSMUSG00000074282 Zfp94 - - 7 A3|7 10.27 cM zinc finger protein 94 protein-coding 108168036 XR_001780734 Gm46383 - - 12 F2|12 predicted gene, 46383 ncRNA 114620 Cdif - - 15 20.0 cM color difference unknown 107064 BB125182 - - - expressed sequence BB125182 unknown 107399302 LOC107399302 - - 14 C3 Apex1 promoter region biological-region 76675 5330403D14Rik - - 1|1 RIKEN cDNA 5330403D14 gene protein-coding 102639453 LOC102639453 - - 13 C1 small EDRK-rich factor 2 pseudogene pseudo 70942 Mm.411548 NR_045306 ENSMUSG00000093772 4931403E22Rik - - 19|19 C1 RIKEN cDNA 4931403E22 gene ncRNA 14158 Mm.23039 NM_008000 ENSMUSG00000000127 Fer AV082135|C330004K01Rik|Fert|Fert2 - 17|17 E1.1 fer (fms/fps related) protein kinase protein-coding 723877 NR_030250 ENSMUSG00000070107 Mir489 Mirn489|mir-489|mmu-mir-489 - 6|6 A1 microRNA 489 ncRNA 100038714 Mm.321330 NR_040421 Gm15401 - - 6 C1|6 predicted gene 15401 ncRNA 408081 D6Wum10.1 - - - DNA segment, Chr 6, Washington University School of Medicine 10.1 unknown 16399 Mm.26646 NM_010575 ENSMUSG00000034664 Itga2b AI172977|CD41|CD41B|GpIIb|alphaIIb - 11 D|11 66.29 cM integrin alpha 2b protein-coding 77269 Mm.389278 NR_040635 9430019J16Rik - - 2|2 C3 RIKEN cDNA 9430019J16 gene ncRNA 12294 Mm.386754 NM_009785 ENSMUSG00000021991 Cacna2d3 Cacnad3|alapha2delta3 - 14|14 A3 calcium channel, voltage-dependent, alpha2/delta subunit 3 protein-coding 17331 Minpp1-ps - - 6|6 F1 multiple inositol polyphosphate histidine phosphatase 1, pseudogene pseudo 235379 Mm.123549 NM_177350 ENSMUSG00000046167 Gldn CRG-L2|Clom|Colm|Crgl2|Crlg2 - 9|9 A5.3 gliomedin protein-coding 102635646 Mm.417667 XR_877962 Gm32932 - - 19 D2|19 predicted gene, 32932 ncRNA 18441 Mm.281452 NM_008772 ENSMUSG00000027765 P2ry1 P2Y1 - 3|3 E1 purinergic receptor P2Y, G-protein coupled 1 protein-coding 61120 D2Mit501 - - 2 94.71 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 501 unknown 16726 l17Wis8 l(17)-8Wis - - lethal, Chr 17, U Wisconsin 8 unknown 105245071 XR_872979 Gm40573 - - 12 F1|12 predicted gene, 40573 ncRNA 109548 Bld - - - blind unknown 100035561 Hdlq31 - - 18 57.53 cM HDL QTL 31 unknown 16637 Mm.14112 NM_008464 ENSMUSG00000061769 Klra6 Ly49f|ly-49f - 6 F3|6 63.44 cM killer cell lectin-like receptor, subfamily A, member 6 protein-coding 21207 T(5;13)5Ad T5Ad - - reciprocal translocation, Chr 5 and 13, Adler 5 other 16939 Mm.1121 NM_008508 ENSMUSG00000043165 Lor AI036317|S77319 - 3 F1|3 40.14 cM loricrin protein-coding 67025 Mm.276856 NM_025919 ENSMUSG00000059291 Rpl11 2010203J19Rik - 4|4 D3 ribosomal protein L11 protein-coding 75285 Mm.402023 NR_126433 ENSMUSG00000092399 4930556N13Rik - - 11|11 C RIKEN cDNA 4930556N13 gene ncRNA 100417058 Gm18389 - - 5|5 B1 autophagy-related 3 pseudogene pseudo 100039790 Trbv3 Gm2426|Tcrb-V16 - 6 19.12 cM|6 B1 T cell receptor beta, variable 3 other 21414 Mm.31630 NM_009331 ENSMUSG00000000782 Tcf7 AI465550|TCF-1|Tcf1 - 11 B1.3|11 31.86 cM transcription factor 7, T cell specific protein-coding 433478 Gm14038 EG433478 - 2|2 F3 zinc finger, AN1-type domain 1 pseudogene pseudo 16534 Mm.9911 NM_008433 ENSMUSG00000054342 Kcnn4 IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1 - 7|7 A3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 protein-coding 108167506 XR_001778358 Gm46022 - - 7 F5|7 predicted gene, 46022 ncRNA 667055 Mm.327371 NM_001142539 ENSMUSG00000056133 Gm9992 - - 17|17 A1 predicted gene 9992 protein-coding 85157 D6Mit317 - - 6 27.82 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 317 unknown 11753 ao - - - apampischo unknown 56457 Mm.290960 NM_019649 ENSMUSG00000002981 Clptm1 HS9|N14 - 7|7 A3 cleft lip and palate associated transmembrane protein 1 protein-coding 100503292 XR_388713 Gm12279 - - 11 B2|11 38.46 cM predicted gene 12279 ncRNA 105243059 Mm.404251 XR_869957 Gm39091 Gm45108 - 7 F3|7 predicted gene, 39091 ncRNA 100017 Mm.27486 NM_145554 ENSMUSG00000037295 Ldlrap1 AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2 - 4|4 D3 low density lipoprotein receptor adaptor protein 1 protein-coding 240888 Mm.329929 NM_001081126 ENSMUSG00000040836 Gpr161 Gm208|Gm208Gpr|vl - 1 H2.2|1 72.64 cM G protein-coupled receptor 161 protein-coding 102633187 LOC102633187 - - X A5 60S ribosomal protein L37 pseudogene pseudo 61397 D5Mit149 - - 5 19.06 cM DNA segment, Chr 5, Massachusetts Institute of Technology 149 unknown 258427 Mm.377495 NM_146435 ENSMUSG00000075220 Olfr993 MOR203-2 - 2|2 D olfactory receptor 993 protein-coding 414271 A830091E24 - - - uncharacterized A830091E24 unknown 434689 Mm.484129 NM_001134299 ENSMUSG00000067698 Gm10220 - - 5|5 B1 predicted gene 10220 protein-coding 19617 Rb(8.17)1Iem Rb1Iem - - Robertsonian translocation, Chr 8 and 17, Inst of Experimental Medicine Leningrad 1 other 14133 Mm.10510 NM_007995 ENSMUSG00000026938 Fcna Fcn1 - 2|2 A3 ficolin A protein-coding 258987 Mm.223376 NM_146985 ENSMUSG00000075065 Olfr1270 MOR227-1 - 2|2 E1 olfactory receptor 1270 protein-coding 108168738 XR_001783226 Gm46730 - - 2 A1|2 predicted gene, 46730 ncRNA 75885 4930566K11Rik - - 6|6 B3 RIKEN cDNA 4930566K11 gene protein-coding 258270 Mm.377404 NM_146273 ENSMUSG00000043119 Olfr448 MOR261-13 - 6|6 B2.1 olfactory receptor 448 protein-coding 666597 Gm8182 EG666597 - 5|5 C2 ribosomal protein L7A pseudogene pseudo 100036293 Eae39 Eae26 - 5 50.68 cM experimental allergic encephalomyelitis susceptibility 39 unknown 105244652 XR_868002 Gm40224 - - 4 C7|4 predicted gene, 40224 ncRNA 320704 Mm.437948 A130001G05Rik - - 2|2 RIKEN cDNA A130001G05 gene protein-coding 667893 Gm8865 EG667893 - 14|14 C3 predicted gene 8865 pseudo 102637164 Mm.488996 Gm34047 - - 12|12 predicted gene, 34047 ncRNA 74452 Mm.434055 4933413C19Rik - - 19|19 RIKEN cDNA 4933413C19 gene protein-coding 353282 Mm.329991 NM_177386 ENSMUSG00000061186 Sfmbt2 D2Wsu23e|D330030P06Rik - 2 A1|2 7.81 cM Scm-like with four mbt domains 2 protein-coding 74857 Mm.252718 4930448O17Rik - - 13|13 RIKEN cDNA 4930448O17 gene protein-coding 319636 Mm.103464 NM_176966 ENSMUSG00000054752 Fsd1l A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl - 4|4 B2 fibronectin type III and SPRY domain containing 1-like protein-coding 100039229 Gm10358 - - 8 C1|8 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102634406 Gm22043 - - 3|3 predicted gene, 22043 pseudo 62074 D10Mit57 - - 10 24.87 cM DNA segment, Chr 10, Massachusetts Institute of Technology 57 unknown 83456 Mm.358791 NM_031260 ENSMUSG00000015365 Mov10l1 CHAMP|Csm - 15|15 E3 Moloney leukemia virus 10-like 1 protein-coding 240174 Mm.246767 NM_177826 ENSMUSG00000024251 Thada 6530405K19|A930021O22|AU019899|BC052885|GITA - 17|17 E4 thyroid adenoma associated protein-coding 108167913 LOC108167913 - - 11 B5 40S ribosomal protein S12 pseudogene pseudo 102639708 XR_882337 Gm21758 - - Y C2|Y predicted gene, 21758 ncRNA 100043934 Gm4726 - - X|X A1.1 predicted gene 4726 pseudo 56698 Mm.214569 NM_019996 ENSMUSG00000008301 Phax 2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55 - 18 D3|18 30.63 cM phosphorylated adaptor for RNA export protein-coding 100035053 Lgq5 - - - late growth QTL 5 unknown 102631613 XR_379323 ENSMUSG00000110988 Gm29909 - - 9 A5.1|9 predicted gene, 29909 ncRNA 672498 XM_011248574 Gm9564 Gm177 - 8 E1|8 predicted gene 9564 protein-coding 100534280 Gm6914 EG628776 - 16|16 B5 ribosomal protein L3 pseudogene pseudo 665700 Mm.80703 NM_177649 ENSMUSG00000055632 Hmcn2 D030068H01 - 2|2 B hemicentin 2 protein-coding 638353 Gm7236 EG638353 - 14|14 C1 predicted gene 7236 pseudo 11358 ac - - - absent corpus callosum unknown 18543 pcp - - - polydactyly with cleft palate unknown 107833 Cdc2b Cdc2 - - cell division cycle 2 homolog B (S. pombe) protein-coding 52627 D11Ertd546e - - - DNA segment, Chr 11, ERATO Doi 546, expressed unknown 74872 Mm.427729 NR_040700 ENSMUSG00000089879 4930448H16Rik - - 5|5 G2 RIKEN cDNA 4930448H16 gene ncRNA 105246425 XR_877370 Gm41715 - - 18 B3|18 predicted gene, 41715 ncRNA 71456 8430401P03Rik - - 10|10 RIKEN cDNA 8430401P03 gene protein-coding 330907 Gm5120 EG330907 - 9|9 A4 zinc finger CCCH type containing 11A pseudogene pseudo 108167466 Mm.365101 NM_001347558 ENSMUSG00000109859 Gm45618 - - 7 F5|7 predicted gene 45618 protein-coding 11517 Mm.44245 NM_007407 ENSMUSG00000029778 Adcyap1r1 2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R - 6|6 B3 adenylate cyclase activating polypeptide 1 receptor 1 protein-coding 102633356 XR_374214 Gm31201 - - 2 B|2 predicted gene, 31201 ncRNA 104797221 NR_128564 ENSMUSG00000092879 Gm22650 Mir3552|mir-3552|mmu-mir-3552 - X|X F2 predicted gene, 22650 ncRNA 105244335 XR_866884 Gm39965 - - 2 H1|2 predicted gene, 39965 ncRNA 105245977 Gm41346 - - 15|15 predicted gene, 41346 ncRNA 52225 D4Ertd103e - - 4 40.66 cM DNA segment, Chr 4, ERATO Doi 103, expressed unknown 102640346 Gm28923 - - 1 C3|1 predicted gene 28923 pseudo 777683 Mm.342177 Ighv5-1 - - 12|12 F1 immunoglobulin heavy variable V5-1 pseudo 626479 Gm6680 EG626479 - 3|3 E3 predicted gene 6680 pseudo 100503109 Gm16059 - - 15|15 37.71 cM predicted gene 16059 ncRNA 259102 Mm.377844 NM_147098 ENSMUSG00000050281 Olfr630 MOR17-1 - 7|7 E3 olfactory receptor 630 protein-coding 627852 Gm6796 EG627852 - 9|9 A4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 624507 Gm6509 - - 5 E3|5 predicted gene 6509 protein-coding 329015 Mm.277384 NM_194348 ENSMUSG00000024773 Atg2a 1810013C15Rik|A830054M12|BC023754|mKIAA0404 - 19|19 A autophagy related 2A protein-coding 75425 Mm.29068 NM_029282 ENSMUSG00000027650 Tti1 2610036D13Rik|AI449463 - 2|2 H1 TELO2 interacting protein 1 protein-coding 102640520 Mm.445939 XR_880780 4930556A17Rik - - 3|3 B RIKEN cDNA 4930556A17 gene ncRNA 258394 Mm.434316 NM_146399 ENSMUSG00000111259 Olfr1328 MOR259-1|MOR259-13|Olfr1519 - 4|4 D2.1 olfactory receptor 1328 protein-coding 236737 Gm1848 - - X|X A1.3 Na K-ATPase beta-3 subunit pseudogene pseudo 666857 Gm8328 EG666857 - 15 A2|15 malignant T cell amplified sequence 1 pseudogene pseudo 12461 Mm.247788 NM_007636 ENSMUSG00000034024 Cct2 Cctb - 10|10 D2 chaperonin containing Tcp1, subunit 2 (beta) protein-coding 224671 Mm.41220 NM_027060 ENSMUSG00000062202 Btbd9 1700023F20Rik|4930402L05|AI464421 - 17|17 A3.3 BTB (POZ) domain containing 9 protein-coding 17183 Mm.29428 NM_013592 ENSMUSG00000016995 Matn4 matrilin-4 - 2 H3|2 85.16 cM matrilin 4 protein-coding 258385 Mm.377470 NM_146390 ENSMUSG00000050504 Olfr1323 MOR216-1 - X|X A5 olfactory receptor 1323 protein-coding 71052 Mm.399489 NR_045432 4933400B14Rik - - 17|17 E5 RIKEN cDNA 4933400B14 gene ncRNA 74081 Mm.260247 NM_001039184 ENSMUSG00000033671 Cep350 4933409L06Rik|6430546F08Rik - 1|1 G3 centrosomal protein 350 protein-coding 108167796 XR_001779728 Gm46213 - - 10 A3|10 predicted gene, 46213 ncRNA 100042516 Gm3880 - - X D|X predicted pseudogene 3880 protein-coding 51877 D4Ertd290e - - - DNA segment, Chr 4, ERATO Doi 290, expressed unknown 268465 Mm.358937 NM_177752 ENSMUSG00000039055 Eme1 6820428D13 - 11|11 D essential meiotic structure-specific endonuclease 1 protein-coding 110692 Hydk - - Y|Y histocompatibility Y antigen D-restricted protein-coding 108168329 XR_001782164 Gm46586 - - 17 E4|17 predicted gene, 46586 ncRNA 61303 D3Mit110 - - 3 61.27 cM DNA segment, Chr 3, Massachusetts Institute of Technology 110 unknown 100503994 Selenok-ps6 Gm20003 - 13 B3|13 32.74 cM selenoprotein K, pseudogene 6 pseudo 667407 Gm8613 EG667407 - 10 C3|10 Sp140 nuclear body protein pseudogene pseudo 100036351 Scgq3 Scg-3 - 2 74.83 cM spontaneous crescentic glomerulonephritis QTL 3 unknown 14528 Mm.10651 NM_008102 ENSMUSG00000037580 Gch1 GTP-CH|GTP-CH-I|GTPCH|Gch - 14 C1|14 24.6 cM GTP cyclohydrolase 1 protein-coding 100041734 Mm.291085 XR_001784926 ENSMUSG00000072762 4930522L14Rik Gm42152 - 5|5 F RIKEN cDNA 4930522L14 gene protein-coding 664895 Ywhaq-ps2 Gm13819 - 5|5 F tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 2 pseudo 102640901 XR_876932 Gm36856 - - 17 E1.3|17 predicted gene, 36856 ncRNA 620316 Mm.450006 BC002189 - - 3 A2|3 cDNA sequence BC002189 unknown 15078 Mm.138832 NM_008210 ENSMUSG00000060743 H3f3a EyeLinc14|H3.3A - 1|1 H4 H3 histone, family 3A protein-coding 244059 Mm.34539 NM_001081345 ENSMUSG00000078671 Chd2 2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2 - 7|7 D1 chromodomain helicase DNA binding protein 2 protein-coding 102639249 Gm35603 - - 17|17 predicted gene, 35603 ncRNA 100417643 Gm5605 EG434275 - 8|8 A1.1 corepressor interacting with RBPJ, 1 pseudogene pseudo 62978 D16Mit194 - - 16 27.79 cM DNA Segment, Chr 16, Massachusetts Institute of Technology 194 unknown 109449 Bhr5 - - 6 53.29 cM bronchial hyperresponsiveness 5 unknown 69226 Mm.32414 NM_029394 ENSMUSG00000024535 Snx24 2810011K15Rik|5730433I16Rik|AI451341 - 18|18 D1 sorting nexing 24 protein-coding 56279 Mm.279863 NM_019833 ENSMUSG00000036186 Fam69b AB030186|AW209000|B230317C12Rik|PIP49 - 2|2 A3 family with sequence similarity 69, member B protein-coding 73329 Mm.293024 1700040F15Rik - - Y|Y A1 RIKEN cDNA 1700040F15 gene protein-coding 78305 Mm.82601 1500032F14Rik - - 19|19 RIKEN cDNA 1500032F14 gene protein-coding 13455 Dp(13)17H Dp17H - - duplication, Chr 13, Harwell 17 other 52754 D13Wsu1e - - - DNA segment, Chr 13, Wayne State University-1, expressed unknown 100416748 Gm18226 - - 9|9 A4 dihydrofolate reductase pseudogene pseudo 258144 Olfr636-ps1 MOR12-2P - 7|7 E3 olfactory receptor 636, pseudogene 1 pseudo 108167527 XR_001778526 Gm46036 - - 8 A2|8 predicted gene, 46036 ncRNA 622935 Mm.459837 NM_001163615 ENSMUSG00000091039 Krtap20-2 1190004K03Rik|EG622935|Gm6371 - 16|16 C3.3 keratin associated protein 20-2 protein-coding 62050 DXMit232 - - X 53.38 cM DNA Segment, Chr X, Massachusetts Institute of Technology 232 unknown 626573 Gm6686 EG626573 - 17|17 A2 predicted pseudogene 6686 protein-coding 17276 Mm.440479 NM_008581 Mela 80kDa|Ag|env|gag|gag-pol|pol - 8|8 E1 melanoma antigen other 19406 Rare4 - - - retinoic acid response element 4 other 100861814 LOC100861814 - - 14 C1 uncharacterized LOC100861814 pseudo 654424 Mm.425130 NM_001039096 ENSMUSG00000086392 Mccc1os A330050B17Rik - 3|3 B methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand ncRNA 320597 6330444A18Rik - - 7|7 RIKEN cDNA 6330444A18 gene protein-coding 105243167 XR_870329 Gm9939 - - 8 A4|8 21.16 cM predicted gene 9939 ncRNA 100415974 Gm15078 - - X|X F1 prohibitin pseudogene pseudo 626489 Gm12871 - - 4|4 D2.2 predicted gene 12871 pseudo 102631602 XR_383228 Gm29899 - - 14 A3|14 predicted gene, 29899 ncRNA 79202 Mm.261384 NM_023680 ENSMUSG00000010751 Tnfrsf22 2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2 - 7 F5|7 88.27 cM tumor necrosis factor receptor superfamily, member 22 protein-coding 17731 TrnG - - - tRNA tRNA 100036513 Mm.315929 LOC100036513 - - 3|3 A1 uncharacterized LOC100036513 ncRNA 62704 D17Mit140 - - 17 39.89 cM DNA segment, Chr 17, Massachusetts Institute of Technology 140 unknown 218301 Gm4811 EG218301 - 13|13 B3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene pseudo 432602 Mm.246878 NM_001025244 ENSMUSG00000051481 Krtap31-2 - - 11 D|11 keratin associated protein 31-2 protein-coding 360127 D17Brg140 - - - DNA segment, Chr 17, David E. Bergstrom 140 unknown 108167419 XR_001778105 LOC108167419 - - 7 B3 uncharacterized LOC108167419 ncRNA 110120443 LOC110120443 - - - VISTA enhancer mm1010 biological-region 360042 D17Jcs2 - - - DNA segment, Chr 17, John C. Schimenti 2 unknown 102467307 n-TGccc1 n-Tg4 - 3 F2.1|3 nuclear encoded tRNA glycine 1 (anticodon CCC) tRNA 11687 Mm.4584 NM_009660 ENSMUSG00000018924 Alox15 12-LO|12/15-LO|15-LOX|Alox12l|L-12LO - 11 B3|11 42.99 cM arachidonate 15-lipoxygenase protein-coding 13469 Dp(7)19H Dp19H - - duplication, Chr 7, Harwell 19 other 62017 D4Mit342 - - 4 80.45 cM DNA segment, Chr 4, Massachusetts Institute of Technology 342 unknown 17155 Mm.117294 NM_008548 ENSMUSG00000003746 Man1a Man1a1|PCR1 - 10|10 B3 mannosidase 1, alpha protein-coding 78604 B430006N09Rik - - 10|10 RIKEN cDNA B430006N09 gene protein-coding 105244068 XR_865900 Gm39746 - - 1 H6|1 predicted gene, 39746 ncRNA 100502638 Gm19301 - - 14|14 41.14 cM predicted gene, 19301 ncRNA 109386 Tms - - - thermosensitivity unknown 225339 Mm.290804 NM_153515 ENSMUSG00000041915 Ammecr1l 5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik - 18|18 B1 AMME chromosomal region gene 1-like protein-coding 626545 Trdv5 EG626545|Gm6683|Tcrd - 14 C2|14 T cell receptor delta variable 5 other 51850 DXSut1e - - - DNA segment, Chr X, Sutcliffe 1 expressed unknown 258667 Mm.377629 NM_146672 ENSMUSG00000063715 Olfr816 MOR113-1 - 10|10 D3 olfactory receptor 816 protein-coding 22640 Mm.4184 NM_011742 ENSMUSG00000055835 Zfp1 Fnp-1|Zfp-1|mkr-1 - 8 E1|8 57.98 cM zinc finger protein 1 protein-coding 103932 Pv - - - pivoter unknown 108168863 XR_001783802 Gm46798 - - 3 A3|3 predicted gene, 46798 ncRNA 70419 Mm.272859 NM_027419 ENSMUSG00000018570 2810408A11Rik 1700019L01Rik|4930470J18Rik - 11|11 B3 RIKEN cDNA 2810408A11 gene protein-coding 209590 Mm.221227 NM_144548 ENSMUSG00000049093 Il23r IL-23R - 6|6 C1 interleukin 23 receptor protein-coding 100418022 Gm18952 - - 3|3 E3 growth hormone inducible transmembrane protein pseudogene pseudo 102641091 LOC102641091 - - - zinc finger and SCAN domain containing protein 4C-like pseudo 52412 Mm.442320 D9Ertd788e - - 9 72.54 cM DNA segment, Chr 9, ERATO Doi 788, expressed unknown 109550 Gs - - - greasy unknown 105243572 XR_871371 ENSMUSG00000111720 Gm39459 - - 9 F4|9 predicted gene, 39459 ncRNA 108169157 XR_001785331 Gm46968 - - 6 D1|6 predicted gene, 46968 ncRNA 27567 D5Buc29 556B6.SP6 - 5 38.44 cM DNA segment, Chr 5, Bucan 29 unknown 100035888 Nsila1 - - 1 49.26 cM novelty/stress induced locomotor activation 1 unknown 381605 Mm.331595 NM_198664 ENSMUSG00000039813 Tbc1d2 A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1 - 4|4 B1 TBC1 domain family, member 2 protein-coding 108254678 LOC108254678 - - - Pax5 promoter region biological-region 100040805 Gm2976 - - 9 A3|9 ribosomal protein L7A pseudogene pseudo 668975 Gm9429 EG668975 - X|X A1.1 predicted gene 9429 pseudo 109778 Mm.22028 NM_026678 ENSMUSG00000001999 Blvra 0610006A11Rik|2500001N03Rik|Blvr - 2 F1|2 61.76 cM biliverdin reductase A protein-coding 102639468 XR_379891 Gm35775 - - 9 F2|9 predicted gene, 35775 ncRNA 78745 Mm.437929 9530097N15Rik - - 3|3 RIKEN cDNA 9530097N15 gene protein-coding 74068 Mm.73091 NM_023729 ENSMUSG00000010796 Asz1 4933400N19Rik|Gasz|ORF3 - 6|6 A2 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 109181 Mm.208618 NM_028446 ENSMUSG00000021188 Trip11 2610511G22Rik|3110031G15Rik|6030460N08Rik|AI450776|GMAP-210|TRIP230 - 12|12 E thyroid hormone receptor interactor 11 protein-coding 105243278 XR_879158 Gm39242 - - 8 D3|8 predicted gene, 39242 ncRNA 111114 Eif3s6-ps6 Int6-ps6 - - eukaryotic translation initiation factor 3, subunit 6, pseudogene 6 pseudo 105243043 Mm.135543 XR_869909 Gm39079 - - 7 F2|7 predicted gene, 39079 ncRNA 17384 Mm.14126 NM_019471 ENSMUSG00000047562 Mmp10 AV377895|MMP-10|SL-2 - 9|9 A1 matrix metallopeptidase 10 protein-coding 62535 D11Mit168 - - 11 78.74 cM DNA segment, Chr 11, Massachusetts Institute of Technology 168 unknown 100417295 Gm18511 - - 10|10 A3 pyrophosphatase (inorganic) 1 pseudogene pseudo 359869 DXMgc18 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 18 unknown 100035237 Blmpf4 - - 15 47.79 cM bleomycin-induced pulmonary fibrosis 4 unknown 109854 Brm2 - - 15 38.67 cM brachyury modifier 2 protein-coding 100040150 Gm2628 - - 10|10 C1 ribosomal protein L32 pseudogene pseudo 62277 D19Mit36 - - 19 48.79 cM DNA segment, Chr 19, Massachusetts Institute of Technology 36 unknown 231798 Mm.200763 NM_146164 ENSMUSG00000093445 Lrch4 2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248 - 5|5 G2 leucine-rich repeats and calponin homology (CH) domain containing 4 protein-coding 664883 Mm.247195 NM_021361 ENSMUSG00000021047 Nova1 9430099M15Rik|G630039L02|Nova-1 - 12 B3|12 21.46 cM neuro-oncological ventral antigen 1 protein-coding 70831 Mm.347981 NM_027568 ENSMUSG00000070334 Krtap31-1 4733401H21Rik|AI506529 - 11|11 D keratin associated protein 31-1 protein-coding 100417964 Gm15394 - - 1|1 E2.3 DnaJ (Hsp40) homolog, subfamily C, member 10 pseudogene pseudo 100113461 Brml11 - - - bone response to mechanical loading 11 unknown 108185 Rpl7-ps6 - - - ribosomal protein L7, pseudogene 6 pseudo 102633465 Gm31283 - - 15|15 predicted gene, 31283 ncRNA 100782 AL023051 - - - expressed sequence AL023051 protein-coding 100043483 Rpl36-ps2 Gm12342 - 11|11 B5 ribosomal protein L36, pseudogene 2 pseudo 100035787 Epfpq1 Epf%q1 - - epididymal fat percentage QTL 1 unknown 234159 Gm4889 EG234159 - 8|8 A4 predicted gene 4889 ncRNA 62620 D13Mit196 - - 13 63.93 cM DNA segment, Chr 13, Massachusetts Institute of Technology 196 unknown 100042717 Obox4-ps16 Gm3987 - 7 A1|7 oocyte specific homeobox 4, pseudogene 16 pseudo 77973 A930040O22Rik - - 12|12 RIKEN cDNA A930040O22 gene protein-coding 104082 Mm.30850 NM_001014981 ENSMUSG00000040560 Wdr7 AI462727|TRAG|mKIAA0541 - 18|18 E1 WD repeat domain 7 protein-coding 52195 D8Ertd252e - - 8 31.47 cM DNA segment, Chr 8, ERATO Doi 252, expressed unknown 102631808 XR_382842 Gm30050 - - 13 D1|13 predicted gene, 30050 ncRNA 102640895 XR_384853 Gm36852 - - 16 B4|16 predicted gene, 36852 ncRNA 100417452 Gm18615 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 668481 Gm9194 EG668481 - 12|12 A1.1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like pseudogene pseudo 94185 Mm.200792 NM_178589 ENSMUSG00000023915 Tnfrsf21 AA959878|DR6|R74815|TR7 - 17|17 B3 tumor necrosis factor receptor superfamily, member 21 protein-coding 66707 Mm.116869 NM_025719 ENSMUSG00000059395 Nkapl 4921504I05Rik - 13|13 A3.1 NFKB activating protein-like protein-coding 110930 Sui1-rs3 - - - suppressor of initiator codon mutations, related sequence 3 (S. cerevisiae) protein-coding 259041 Mm.223424 NM_147039 ENSMUSG00000042849 Olfr1414 MOR103-2 - 1|1 D olfactory receptor 1414 protein-coding 671003 Mm.475847 NM_001128510 ENSMUSG00000090710 Gm9513 Pate-P|Pate11 - 9 A4|9 predicted gene 9513 protein-coding 14950 Mm.277327 NM_010376 ENSMUSG00000019188 H13 1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp - 2 H1|2 75.41 cM histocompatibility 13 protein-coding 102638707 Gm28996 - - 9|9 predicted gene 28996 pseudo 61046 DXMit123 - - X 3.19 cM DNA segment, Chr X, Massachusetts Institute of Technology 123 unknown 666352 Obox3-ps1 EG666352|Gm8057 - 7|7 A1 oocyte specific homeobox 3, pseudogene 1 pseudo 66177 Mm.390165 NM_025401 ENSMUSG00000084786 Ubl5 1110030M22Rik|beacon - 9|9 A3 ubiquitin-like 5 protein-coding 664609 Mm.296330 NM_001039688 ENSMUSG00000079639 Rhox4a Rhox4|Rhox4.1 - X|X A3.3 reproductive homeobox 4A protein-coding 545137 Gm5808 EG545137 - 15|15 F1 predicted gene 5808 pseudo 53713 D18Pas1 Hox-9 - - DNA segment, Chr 18, Pasteur Institute 1 unknown 93746 Mm.49902 NM_053118 ENSMUSG00000030205 Gprc5d - - 6|6 G1 G protein-coupled receptor, family C, group 5, member D protein-coding 230376 Mm.74730 NM_173400 ENSMUSG00000038047 Haus6 6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574 - 4 C4|4 40.69 cM HAUS augmin-like complex, subunit 6 protein-coding 102638803 XR_377585 Gm35280 - - 6 B2.3|6 predicted gene, 35280 ncRNA 435784 Rps15a-ps8 Gm12471 - 4|4 B2 ribosomal protein S15A, pseudogene 8 pseudo 279561 Mm.441474 NM_001271678 ENSMUSG00000041245 Wnk3 Prkwnk3|Wnk3-ps - X|X F3 WNK lysine deficient protein kinase 3 protein-coding 68927 Mm.276502 NM_026873 ENSMUSG00000021650 Ptcd2 1190005P08Rik - 13|13 D1 pentatricopeptide repeat domain 2 protein-coding 606522 Gm6057 EG606522|Ppia-ps3_1437.1 - 3|3 H1 peptidylprolyl isomerase A pseudogene 3_1437.1 pseudo 102634236 Gm31868 - - 9|9 predicted gene, 31868 ncRNA 102640586 Mm.450191 XR_388972 LOC102640586 - - 11 D collagen alpha-1(II) chain-like protein-coding 107477 Mm.59151 NM_146079 ENSMUSG00000023979 Guca1b BC018258|GCAP2 - 17|17 C guanylate cyclase activator 1B protein-coding 13618 Mm.229532 NM_007904 ENSMUSG00000022122 Ednrb ET-B|ET-BR|ETR-b|ETb|Sox10m1 - 14 E2.3|14 53.05 cM endothelin receptor type B protein-coding 433625 Gm5543 EG433625 - 3|3 F2.1 TD and POZ domain containing 5 pseudogene pseudo 233908 Mm.277680 NM_139149 ENSMUSG00000030795 Fus D430004D17Rik|D930039C12Rik|Fus1|Tls - 7|7 F3 fused in sarcoma protein-coding 97644 C79356 - - - expressed sequence C79356 unknown 258639 Mm.377606 NM_146645 ENSMUSG00000062793 Olfr1158 MOR173-3 - 2|2 D olfactory receptor 1158 protein-coding 102633682 XR_381637 Gm31447 - - 12 C2|12 predicted gene, 31447 ncRNA 20939 Mm.4119 NM_009299 ENSMUSG00000023289 Sva - - 6|6 B2.1 seminal vesicle antigen protein-coding 22688 Mm.107441 NM_011753 ENSMUSG00000063108 Zfp26 5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52 - 9 A3|9 7.55 cM zinc finger protein 26 protein-coding 73779 Mm.263642 NM_028648 ENSMUSG00000002240 Prr27 4930432K09Rik - 5 E1|5 43.56 cM proline rich 27 protein-coding 100503237 Gm19605 - - 12|12 60.59 cM predicted gene, 19605 ncRNA 100126773 Mm.471587 NM_001177585 ENSMUSG00000092244 Esp34 Gm20410 - 17 B1|17 19.16 cM exocrine gland secreted peptide 34 protein-coding 75087 Mm.159422 NM_001100394 ENSMUSG00000040919 4930505A04Rik - - 11|11 A4 RIKEN cDNA 4930505A04 gene protein-coding 108985 2610021C13Rik - - - RIKEN cDNA 2610021C13 gene protein-coding 666887 Gm15532 EG666887 - 6|6 F1 family with sequence similarity 76, member A pseudogene pseudo 100036169 Elcs1 - - - ENU induced lung carcinoma susceptibility 1 unknown 100036046 Bmd38 - - - bone mineral density 38 unknown 66395 Mm.203866 NM_009643 ENSMUSG00000069833 Ahnak DY6 - 19|19 A AHNAK nucleoprotein (desmoyokin) protein-coding 105247176 XR_881458 Gm42321 Gm16080 - 4 D2.3|4 predicted gene, 42321 ncRNA 108168165 XR_001781277 Gm46456 - - 14 D1|14 predicted gene, 46456 ncRNA 111719 Mpmv34 Mpmv-34 - - modified polytropic murine leukemia virus 34 other 100503786 LOC100503786 - - 16 A1 developmental pluripotency associated 2 pseudogene pseudo 102633895 Gm31611 - - 16|16 predicted gene, 31611 ncRNA 241547 Mm.130331 NM_178724 ENSMUSG00000027243 Harbi1 D230010M03Rik - 2|2 E1 harbinger transposase derived 1 protein-coding 102637449 XR_389502 Gm34254 - - 5 F|5 predicted gene, 34254 ncRNA 110852 Adfp-ps Adfp-rs - - adipose differentiation related protein, pseudogene pseudo 105243723 XR_878247 Gm39536 - - X F1|X predicted gene, 39536 ncRNA 30938 Mm.291089 NM_015759 ENSMUSG00000037946 Fgd3 5830461L01Rik|ZFYVE5 - 13 A5|13 25.18 cM FYVE, RhoGEF and PH domain containing 3 protein-coding 27057 Mm.371598 NM_019744 ENSMUSG00000056234 Ncoa4 ARA70|Rfg - 14|14 B nuclear receptor coactivator 4 protein-coding 57782 Mm.320419 NM_021326 ENSMUSG00000061898 Rbak - - 5|5 G2 RB-associated KRAB zinc finger protein-coding 102465709 NR_106088 ENSMUSG00000105778 Mir7229 mmu-mir-7229 - 5|5 F microRNA 7229 ncRNA 107712 Rcs1 Rcs-1 - - reticular cell sarcoma suppression 1 protein-coding 106707176 As021 - - - AmnSINE1 enhancer AS021 biological-region 102467347 n-TKctt15 n-Tk15 - 3 F2.1|3 nuclear encoded tRNA lysine 15 (anticodon CTT) tRNA 27453 15S - - - DNA segment, 15S unknown 108383 Srev7 Srev-7 - - SWR/J-RF/J ecotropic provirus 7 other 61717 D5Mit305 D5Mit305.1 - 5 38.44 cM DNA segment, Chr 5, Massachusetts Institute of Technology 305 protein-coding 245109 Mm.131747 NM_001013765 ENSMUSG00000054272 Zscan4c Gm397|XM_142517|Zscan4d - 7|7 A1 zinc finger and SCAN domain containing 4C protein-coding 11482 Mm.279542 NM_009612 ENSMUSG00000000530 Acvrl1 AI115505|AI427544|Acvrlk1|Alk1 - 15|15 F1 activin A receptor, type II-like 1 protein-coding 193736 Mm.161119 NM_198886 ENSMUSG00000049823 Zbtb12 BC020447|Bat-9|Bat9|G10|NG35 - 17 B1|17 18.43 cM zinc finger and BTB domain containing 12 protein-coding 105245719 XR_874505 Gm41127 - - 14 B|14 predicted gene, 41127 ncRNA 102632712 XR_382561 ENSMUSG00000113453 Gm30709 - - 13 B3|13 predicted gene, 30709 ncRNA 108168015 Gm46364 - - 12 C3|12 predicted gene, 46364 pseudo 630708 Gm7041 EG630708 - 5|5 G3 chromobox protein homolog 3 pseudogene pseudo 108167734 XR_001779486 Gm46163 - - 1 G2|1 predicted gene, 46163 ncRNA 110384 Myhs - - - myosin heavy chain, skeletal muscle protein-coding 67981 Mm.179050 NM_026489 ENSMUSG00000028109 Hormad1 4921522K05Rik|Nohma - 3|3 F2.1 HORMA domain containing 1 protein-coding 21161 T(3;11)16Ad T16Ad - - reciprocal translocation, Chr 3 and 11, Adler 16 other 269033 Mm.87470 NM_172967 ENSMUSG00000044906 4930503L19Rik 9930107F24|BB148262|Lars|Las2 - 18|18 E2 RIKEN cDNA 4930503L19 gene protein-coding 102634665 XR_001779516 Gm32197 - - 1 H2.1|1 predicted gene, 32197 ncRNA 12509 Mm.247265 NM_007652 ENSMUSG00000032679 Cd59a AA987121|Cd59|protectin - 2 E2|2 54.53 cM CD59a antigen protein-coding 112213 Daq16 - - - directional asymmetry QTL 16 unknown 102634419 Mm.383872 XR_382878 Gm32004 - - 13 D2.1|13 predicted gene, 32004 ncRNA 382105 Mm.335468 NM_199036 ENSMUSG00000074060 Fbxw15 Fbxo12J - 9|9 F2 F-box and WD-40 domain protein 15 protein-coding 77519 Mm.431849 NM_001082485 ENSMUSG00000060510 Zfp266 5330440G10Rik|5730601F06Rik|AW552317 - 9|9 A3 zinc finger protein 266 protein-coding 19285 Mm.21864 NM_008986 ENSMUSG00000004044 Cavin1 2310075E07Rik|AW546441|Cav-p60|Cavin|Ptrf - 11 D|11 63.95 cM caveolae associated 1 protein-coding 76002 Mm.139320 NM_001251849 ENSMUSG00000094584 Ms4a18 5033428B15Rik - 19|19 A membrane-spanning 4-domains, subfamily A, member 18 protein-coding 102635421 XR_001780135 Gm11430 - - 11 C|11 51.19 cM predicted gene 11430 ncRNA 100035253 Sdtq5 E7.1 - - skull development traits QTL 5 unknown 780859 Ighv1-3 - - 12|12 F2 immunoglobulin heavy variable V1-3 pseudo 77447 9430096G21Rik - - 2|2 RIKEN cDNA 9430096G21 gene protein-coding 108168269 n-TMcat3 Trnam-cau|n-Tm3 - 15 D3|15 nuclear encoded tRNA methionine 3 (anticodon CAT) tRNA 62910 D10Mit202 - - 10 50.91 cM DNA segment, Chr 10, Massachusetts Institute of Technology 202 unknown 85061 D2Mit90 - - 2 38.62 cM DNA segment, Chr 2, Massachusetts Institute of Technology 90 unknown 628693 Mm.479519 NM_001164329 ENSMUSG00000090881 Gm6904 EG628693 - 14|14 C3 predicted gene 6904 protein-coding 61445 D6Mit123 - - 6 27.76 cM DNA segment, Chr 6, Massachusetts Institute of Technology 123 unknown 110599566 Mm.263319 NM_025462 Eef1akmt4 - - 16 B1 eukaryotic translation elongation factor 1 alpha lysine specific methyltransferase 4 protein-coding 102640827 XR_375216 Gm36803 - - 2 H3|2 predicted gene, 36803 protein-coding 12412 Mm.29055 NM_007622 ENSMUSG00000018666 Cbx1 Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1 - 11 D|11 60.11 cM chromobox 1 protein-coding 436213 Gm5759 EG436213 - X C1|X predicted gene 5759 pseudo 111663 Iap2-1 - - - intracisternal A particles, Thbd linked other 258754 Mm.451661 NM_146759 ENSMUSG00000051046 Olfr214 MOR119-1 - 6|6 E3 olfactory receptor 214 protein-coding 100040525 Mm.472852 NR_028305 Tmem181c-ps 100040596|Tmem181d-ps - 17 A1|17 transmembrane protein 181C, pseudogene pseudo 723850 NR_029849 ENSMUSG00000065510 Mir361 Mirn361|mir-361|mmu-mir-361 - X|X E1 microRNA 361 ncRNA 19417 Mm.44561 NM_011245 ENSMUSG00000032356 Rasgrf1 AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF - 9 E3.1|9 47.31 cM RAS protein-specific guanine nucleotide-releasing factor 1 protein-coding 19034 Gm10123 EG19034 - 9|9 E3.3 peptidylprolyl isomerase A-like pseudogene pseudo 112104 Etohr - - 2 47.93 cM ethanol response acute unknown 723883 NR_029827 ENSMUSG00000065491 Mir7b Mirn7b|mir-7b|mmu-mir-7b - 17|17 D microRNA 7b ncRNA 100169878 Mm.420901 NR_026944 ENSMUSG00000078444 Gm10941 - - 10 C1|10 predicted gene 10941 ncRNA 546651 Rpl10a-ps3 EG546651|Gm5961 - 15|15 F1 ribosomal protein L10A, pseudogene 3 pseudo 100041046 Gm3111 - - 14|14 C1 predicted gene 3111 pseudo 61555 D9Mit164 - - 9 33.34 cM DNA segment, Chr 9, Massachusetts Institute of Technology 164 unknown 77070 6030442H21Rik - - 2|2 RIKEN cDNA 6030442H21 gene protein-coding 105242552 XR_868662 Gm38732 - - 5 G2|5 predicted gene, 38732 ncRNA 100035726 Sluc26 - - 15 41.95 cM susceptibility to lung cancer 26 unknown 98118 C80865 - - - expressed sequence C80865 unknown 102639897 Mm.445945 XR_873211 Gm36099 - - 13 A3.2|13 predicted gene, 36099 ncRNA 100035721 Lhyp - - - lung hyperpermeability unknown 105244890 XR_872735 ENSMUSG00000112353 Gm40418 - - 12 B3|12 predicted gene, 40418 ncRNA 331524 Mm.235055 NM_183319 ENSMUSG00000031258 Xkrx A630026F04 - X|X E3 X-linked Kx blood group related, X-linked protein-coding 107789 Tel3p - - - telomeric sequence, Chr 3, centromere end protein-coding 360098 D17Jcs60 - - - DNA segment, Chr 17, John C. Schimenti 60 unknown 19127 Mm.1386 NM_008936 ENSMUSG00000044542 Prop1 Prop-1|df - 11 B1.3|11 30.95 cM paired like homeodomain factor 1 protein-coding 57342 Mm.143763 NM_020606 ENSMUSG00000030770 Parva 2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin - 7|7 F1 parvin, alpha protein-coding 622167 Mm.244115 NR_040673 ENSMUSG00000086136 Gm12718 - - 4|4 C6 predicted gene 12718 ncRNA 27886 Mm.256480 NM_022408 ENSMUSG00000003527 Dgcr14 AI462402|D16H22S1269E|Dgcr1|Dgsi|ES2|Es2el|Ess2 - 16 A3|16 11.09 cM DiGeorge syndrome critical region gene 14 protein-coding 16328 Mm.288729 NM_008383 ENSMUSG00000038241 Cep250 AW490617|B230210E21Rik|Cep2|Inmp - 2|2 H1 centrosomal protein 250 protein-coding 108333 Emv36 Emv-36 - - endogenous ecotropic MuLV 36 other 105243577 Gm39462 - - 9|9 predicted gene, 39462 ncRNA 109409 Tbs1 - - 3 50.18 cM tuberculosis severity 1 unknown 100422787 Gm15102 - - X F3|X 68.46 cM ovary testis transcribed pseudogene pseudo 50931 Mm.38386 NM_016671 ENSMUSG00000005465 Il27ra CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1 - 8|8 C2 interleukin 27 receptor, alpha protein-coding 69709 Mm.250552 NM_001204912 ENSMUSG00000096199 Ptrhd1 2410017P09Rik - 12|12 A1.1 peptidyl-tRNA hydrolase domain containing 1 protein-coding 667623 Vmn1r-ps83 EG667623|Gm8733 - 7|7 A3 vomeronasal 1 receptor, pseudogene 83 pseudo 53773 D15Citb1 D15Ag1 - - DNA segment, Chr 15, California Institute of Technology, Biology Department 1 unknown 105245909 Mm.229263 NR_155440 ENSMUSG00000115749 Gm41289 - - 15 B3.1|15 predicted gene, 41289 ncRNA 666065 Vmn2r-ps53 EG666065|Gm7914 - 7 A1|7 vomeronasal 2, receptor, pseudogene 53 pseudo 58803 Mm.34037 NM_021453 ENSMUSG00000024738 Pga5 1110035E17Rik|Pepf - 19 A|19 pepsinogen 5, group I protein-coding 108168672 Gm46718 - - Y A1|Y predicted gene, 46718 pseudo 100418358 Gm19160 - - 19|19 C2 nudix (nucleoside diphosphate linked moiety X)-type motif 9 pseudogene pseudo 96868 C77183 - - - expressed sequence C77183 unknown 105242908 XR_881950 Gm38987 - - 7 B2|7 predicted gene, 38987 ncRNA 61086 D5Mit353 - - 5 21.25 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 353 unknown 105246738 XR_878638 Gm41980 - - 1 G3|1 predicted gene, 41980 ncRNA 100043944 Gm16480 EG668981 - X|X A1.1 voltage-dependent anion channel 1 pseudogene pseudo 382931 Gm5207 EG382931 - 14|14 E2.1 3-phosphoglycerate dehydrogenase pseudogene pseudo 108167327 XR_001779635 LOC108167327 - - 1 H6 uncharacterized LOC108167327 ncRNA 668916 Gm11645 - - 2|2 G1 predicted gene 11645 pseudo 633072 Gm7103 EG633072 - 3|3 A1 mitogen-activated protein kinase kinase kinase 3 pseudogene pseudo 102635938 XR_001778839 Gm33147 - - 1 A4|1 predicted gene, 33147 ncRNA 102577428 Mm.353122 NM_001287195 ENSMUSG00000090897 Gm44501 Esp6-esp5|Esp6Esp5 - 17 B2|17 predicted readthrough transcript, 44501 protein-coding 100502761 Gm13820 - - 5|5 55.99 cM predicted gene 13820 protein-coding 100504103 Gm13186 - - 2|2 2.0 cM NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial-like pseudo 102632194 Gm30334 - - 14|14 predicted gene, 30334 pseudo 665262 Gm7560 EG665262 - 1|1 A2 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 pseudogene pseudo 492861 Sluc30 - - 7 9.94 cM susceptibility to lung cancer 30 unknown 105246892 Gm42095 - - 11|11 predicted gene, 42095 ncRNA 621430 Mm.469903 NM_001105190 ENSMUSG00000090362 Vmn2r79 EG621430 - 7|7 D3 vomeronasal 2, receptor 79 protein-coding 110456 20.MMHAP88FLG2 ESTM56 - - DNA segment, 20.MMHAP88FLG2 protein-coding 23871 Mm.292415 NM_011808 ENSMUSG00000032035 Ets1 AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs - 9 A4|9 17.97 cM E26 avian leukemia oncogene 1, 5' domain protein-coding 72181 Mm.282560 NM_028142 ENSMUSG00000028706 Nsun4 2310010O12Rik|2810405F18Rik|AI507900|Shtap - 4|4 D1 NOL1/NOP2/Sun domain family, member 4 protein-coding 108168437 Gm46673 - - X A5|X multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 102636828 LOC102636828 - - 6 D3 transmembrane protein 258 pseudogene pseudo 51996 D8Ertd51e - - 8 10.3 cM DNA segment, Chr 8, ERATO Doi 51, expressed unknown 76186 6330563C09Rik - - 13|13 D2.3 RIKEN cDNA 6330563C09 gene unknown 75104 Mm.48712 NM_175217 ENSMUSG00000039533 Mmd2 4930518M15Rik|C88001 - 5|5 G2 monocyte to macrophage differentiation-associated 2 protein-coding 209497 Mm.249648 NM_177592 ENSMUSG00000047045 Tmem164 AI316850|AI852450|AW547186|F730011B02 - X|X F2 transmembrane protein 164 protein-coding 100417415 Gm18599 - - 7|7 F1 Rho GTPase activating protein 21 pseudogene pseudo 385326 Gm5380 Cct7-1p|EG385326 - X|X A1.1 chaperonin containing Tcp1, subunit 7 (eta) pseudogene pseudo 404570 AL118186 - - - expressed sequence AL118186 unknown 100418424 Gm19204 - - 7|7 E1 ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog pseudogene pseudo 100036031 Bmc8 - - - bone mineral content 8 unknown 73942 Mm.85935 NM_001163627 ENSMUSG00000034334 Fam151b 4930405M20Rik - 13|13 C3 family with sequence similarity 151, member B protein-coding 100417491 Gm18643 - - 13|13 A3.3 Rho GTPase activating protein 20 pseudogene pseudo 68497 Mm.24446 NM_178065 ENSMUSG00000042350 Arel1 1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317 - 12|12 D1 apoptosis resistant E3 ubiquitin protein ligase 1 protein-coding 108168576 XM_017318780 LOC108168576 - - Y D Y-linked testis-specific protein 1-like protein-coding 102635010 Gm32453 - - 6 D3|6 predicted gene, 32453 pseudo 76640 Mm.78423 NM_029685 ENSMUSG00000047129 1700113H08Rik - - 10|10 C1 RIKEN cDNA 1700113H08 gene protein-coding 100039978 Gm2531 - - 18 A1|18 LSM6 homolog, U6 small nuclear RNA associated pseudogene pseudo 102639860 XR_382036 Gm36074 - - 13 A1|13 predicted gene, 36074 ncRNA 384701 Mm.389967 NM_001001559 ENSMUSG00000057321 Usp17ld Dub2a|Dub4 - 7|7 E3 ubiquitin specific peptidase 17-like D protein-coding 71474 Mm.184055 NM_026813 ENSMUSG00000036561 Ppp6r2 1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2 - 15|15 E3 protein phosphatase 6, regulatory subunit 2 protein-coding 61932 D5Mit368 - - 5 60.64 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 368 unknown 52798 D4Ag1e - - - DNA segment, Chr 4, Applied Genetics Laboratories, Inc-1 expressed unknown 14171 Mm.12814 NM_008004 ENSMUSG00000022101 Fgf17 - - 14 D2|14 36.4 cM fibroblast growth factor 17 protein-coding 108167379 XR_001784032 LOC108167379 - - 3 H3 uncharacterized LOC108167379 ncRNA 108603 Iap3rb15 - - - intracisternal A-type particle, U3 region, SINE repeat b-15 other 258777 Mm.223208 NM_146781 ENSMUSG00000043911 Olfr922 MOR161-3 - 9|9 A5.1 olfactory receptor 922 protein-coding 666981 Gm8401 EG666981 - X|X A7.2 YTH domain family 2 pseudogene pseudo 105242926 XR_001778103 Gm38998 - - 7 B3|7 predicted gene, 38998 ncRNA 382083 Mm.477103 NM_001025612 ENSMUSG00000039452 Snx22 Gm1120 - 9|9 C sorting nexin 22 protein-coding 20362 Mm.274399 NM_033144 ENSMUSG00000018398 Sept8 AW046166|Sepl - 11 B1.3|11 31.96 cM septin 8 protein-coding 67086 Mm.396158 NR_026924 ENSMUSG00000100253 1700020N18Rik - - 1|1 D RIKEN cDNA 1700020N18 gene ncRNA 20449 Mm.260838 NM_011374 ENSMUSG00000030283 St8sia1 9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a - 6 G2-G3|6 74.78 cM ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 102634787 XR_001782500 Gm32288 - - 18 C|18 predicted gene, 32288 ncRNA 100416953 Gm18334 - - 16|16 A2 folate receptor 1 (adult) pseudogene pseudo 103765 Mm.221274 NM_153596 ENSMUSG00000049904 Tmem17 AI503894|AW049890 - 11|11 A3.2 transmembrane protein 17 protein-coding 545592 Gm11847 - - 4|4 A1 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 100417994 Gm15229 EG245693 - X|X F5 family with sequence similarity 154, member A pseudogene pseudo 100040861 Mm.484960 NM_001113735 ENSMUSG00000096154 Gm13057 - - 4|4 E1 predicted gene 13057 protein-coding 667696 Gm8767 EG667696 - 10|10 A4 aldolase 1 A retrogene 1 pseudogene pseudo 54001 D16Jhu30 351B13.SP6 - - DNA segment, Chr 16, Johns Hopkins University 30 unknown 72282 Mm.55317 NM_028183 ENSMUSG00000027713 1810062G17Rik - - 3|3 B RIKEN cDNA 1810062G17 gene protein-coding 666153 Gm7952 EG666153 - 1|1 D glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102634443 XR_380628 Gm32024 - - 10 C1|10 predicted gene, 32024 ncRNA 100035550 Alaa4 - - 15 27.16 cM alopecia areata 4 unknown 19344 Mm.12815 NM_011229 ENSMUSG00000000711 Rab5b C030027M18Rik - 10|10 D3 RAB5B, member RAS oncogene family protein-coding 110012 Mm.22623 NM_148934 ENSMUSG00000020308 Tpgs1 AV005629|Gm16517|Gtrgeo22|PGs1 - 10 C1|10 39.72 cM tubulin polyglutamylase complex subunit 1 protein-coding 61918 D4Mit302 - - 4 40.25 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 302 unknown 223809 Mm.486225 NM_198927 ENSMUSG00000047295 Smgc 2310010P21Rik|DXImx49e|Muc19|Muc19/Smgc|Sfc21 - 15|15 E3 submandibular gland protein C protein-coding 108168373 XR_001782429 Gm46617 - - 18 B1|18 predicted gene, 46617 ncRNA 629043 Gm6942 EG629043 - 18|18 D3 ribonuclease/angiogenin inhibitor 1 pseudogene pseudo 109135 Mm.247670 NM_144920 ENSMUSG00000030231 Plekha5 2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor - 6|6 G2 pleckstrin homology domain containing, family A member 5 protein-coding 108168602 XM_017318808 LOC108168602 - - Y C2 Y-linked testis-specific protein 1-like protein-coding 102466884 NR_106182 ENSMUSG00000099225 Mir8104 Gm27380|mmu-mir-8104 - 10|10 D2 microRNA 8104 ncRNA 100040113 Gm2607 - - 8 B1.1|8 predicted gene 2607 pseudo 61979 D8Mit325 - - - DNA Segment, Chr 8, Massachusetts Institute of Technology 325 unknown 74174 Mm.325325 NM_028797 ENSMUSG00000022487 Gtsf1 1700006H03Rik|Cue110 - 15|15 F3 gametocyte specific factor 1 protein-coding 102636580 Gm28248 - - Y|Y predicted gene 28248 ncRNA 105246992 Gm42180 - - X|X predicted gene, 42180 ncRNA 108737 Mm.293565 NM_133985 ENSMUSG00000036737 Oxsr1 2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101 - 9|9 F3 oxidative-stress responsive 1 protein-coding 16694 Mm.34372 NM_010670 ENSMUSG00000069583 Krtap12-1 D10Jhu14e - 10 C1|10 39.72 cM keratin associated protein 12-1 protein-coding 105244184 XR_866365 Gm39837 - - 2 C1.3|2 predicted gene, 39837 ncRNA 108511965 Zfpm1r1-zfpm1r2 Zfpm1R1|Zfpm1R2 - 8 E1 Zfpm1R1 and Zfpm1R2 erythroid cis-regulatory modules biological-region 100503471 Mm.380305 NR_131748 Gm15867 - - 1 H6|1 97.55 cM predicted gene 15867 ncRNA 100036058 Cfsw3 - - - cystic fibrosis survival to weaning 3 unknown 105244255 XR_866612 Gm39897 - - 2 E2|2 predicted gene, 39897 ncRNA 100504265 Mm.383417 NR_038021 Gm20139 - - 10 A3|10 8.18 cM predicted gene, 20139 ncRNA 71216 Mm.105343 4933427C19Rik - - 6|6 RIKEN cDNA 4933427C19 gene protein-coding 26570 Mm.260988 NM_011990 ENSMUSG00000027737 Slc7a11 9930009M05Rik|AI451155|sut|xCT - 3 C|3 21.72 cM solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 protein-coding 107773 Melb - - - melanoblast melanocyte population size protein-coding 628564 Igkv13-64 gu33 - 6|6 C1 immunoglobulin kappa chain variable 13-64 pseudo 667978 Gm8910 EG667978 - 3|3 A1 phosphoglycerate mutase 1 pseudogene pseudo 105440 Mm.6720 NM_134073 ENSMUSG00000034327 Kctd9 - - 14|14 D1 potassium channel tetramerisation domain containing 9 protein-coding 100035853 W3q11 - - - weight 3 weeks QTL 11 unknown 52168 D7Ertd193e - - 7 86.41 cM DNA segment, Chr 7, ERATO Doi 193, expressed unknown 105244866 XR_869407 Gm40397 - - 6 F1|6 predicted gene, 40397 ncRNA 100418030 Gm9202 EG668492 - 12|12 A1.1 zinc finger CCHC-type and RNA binding motif 1 pseudogene pseudo 100039736 Mm.399229 XR_001782985 Gm15762 - - 6 G3|6 predicted gene 15762 unknown 195531 Mm.270762 NM_001039209 ENSMUSG00000078496 Zfp982 Gm13152 - 4 E1|4 zinc finger protein 982 protein-coding 404484 Olfr1187-ps1 GA_x5J8B7W4NS2-96830-97153 - 2|2 D olfactory receptor 1187, pseudogene 1 pseudo 102636296 Gm33403 - - 16|16 predicted gene, 33403 ncRNA 100418344 Gm19152 - - X|X E1 serine (or cysteine) peptidase inhibitor, clade B, member 6a pseudogene pseudo 66536 Mm.38244 NM_025623 ENSMUSG00000015247 Nipsnap3b 2700063N13Rik|Nipsnap3a - 4|4 B2 nipsnap homolog 3B protein-coding 50780 Mm.286753 NM_019492 ENSMUSG00000059810 Rgs3 4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S - 4 B3|4 33.19 cM regulator of G-protein signaling 3 protein-coding 61871 D1Mit345 - - 1 56.89 cM DNA segment, Chr 1, Massachusetts Institute of Technology 345 unknown 93947 D16Jhu33 351B13.T7 - - DNA segment, Chr 16, Johns Hopkins University 33 unknown 62211 D16Mit39 - - 16 28.44 cM DNA segment, Chr 16, Massachusetts Institute of Technology 39 unknown 101055864 Mm.382801 NM_001324551 ENSMUSG00000109060 LOC101055864 - - 7 A3 serine/threonine-protein kinase MARK2-like protein-coding 100502617 Gm19287 - - 6|6 35.94 cM 60S ribosomal protein L34-like pseudo 493175 Vtbt1 - - 1 37.02 cM vertebral trabecular bone trait 1 unknown 102631635 Mm.403892 XR_382841 Gm29927 - - 13 D1|13 predicted gene, 29927 ncRNA 210853 Mm.441622 NM_177596 ENSMUSG00000063383 Zfp947 6720451E15|EG210853|Gm4769 - 17 A3.3|17 zinc finger protein 947 protein-coding 61583 DXMit132 - - X 62.48 cM DNA segment, Chr X, Massachusetts Institute of Technology 132 unknown 102466991 NR_105977 ENSMUSG00000098712 Mir7010 Gm28029|mmu-mir-7010 - 3|3 E3 microRNA 7010 ncRNA 111262 Snrp1a-rs3 - - - U1 small nuclear ribonucleoprotein 1A, related sequence 3 pseudo 18303 Oit4 EF-11 - - oncoprotein induced transcript 4 unknown 229725 Mm.214545 NM_145543 ENSMUSG00000027884 Clcc1 Mclc - 3|3 F3 chloride channel CLIC-like 1 protein-coding 102640713 XR_385617 Gm36715 - - 17 C|17 predicted gene, 36715 ncRNA 22402 Mm.10222 NM_018865 ENSMUSG00000005124 Wisp1 AW146261|CCN4|Elm1 - 15 D2|15 29.3 cM WNT1 inducible signaling pathway protein 1 protein-coding 191578 Mm.21469 NM_180984 ENSMUSG00000035266 Helq AU021725|D430018E21Rik|Hel308 - 5|5 E4 helicase, POLQ-like protein-coding 105247159 XR_881388 Gm11415 - - 4 C3|4 39.46 cM predicted gene 11415 ncRNA 105244738 XR_868395 Gm40295 - - 5 B3|5 predicted gene, 40295 ncRNA 100503816 Mm.398579 NR_037987 ENSMUSG00000086593 Gm16548 - - 1 H2.2|1 71.46 cM predicted gene 16548 ncRNA 102640429 Gm36492 - - 19 C1|19 predicted gene, 36492 pseudo 102633505 Gm31315 - - 6|6 predicted gene, 31315 pseudo 105244995 Gm40510 - - 9|9 predicted gene, 40510 ncRNA 108167706 XR_001779341 Gm46143 - - 9 A5.1|9 predicted gene, 46143 ncRNA 665002 Gm7442 EG665002 - 3|3 A2 predicted gene 7442 pseudo 12993 Mm.4908 NM_007785 ENSMUSG00000061937 Csn1s2a Csng|PP22 - 5 E1|5 43.56 cM casein alpha s2-like A protein-coding 102631598 XR_387791 Gm29895 Gm45287 - 8 C1|8 predicted gene, 29895 ncRNA 216154 Mm.260089 NM_198107 ENSMUSG00000013833 Med16 95kDa|A630083L04|DRIP92|Thrap5|Trap95 - 10|10 C1 mediator complex subunit 16 protein-coding 64435 Mm.31821 NM_144960 ENSMUSG00000026415 Fcamr - - 1|1 E4 Fc receptor, IgA, IgM, high affinity protein-coding 67270 Mm.30008 NM_026065 ENSMUSG00000062981 Mrpl42 2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt - 10 C2|10 49.39 cM mitochondrial ribosomal protein L42 protein-coding 320480 Mm.440629 6430537K16Rik - - 17|17 RIKEN cDNA 6430537K16 gene protein-coding 493128 Epfpq2 Epf%q2|Epfq2 - - epididymal fat percentage QTL 2 unknown 104143 Ly36 Ly-36 - - lymphocyte antigen 36 protein-coding 102634036 Mm.376221 XR_377511 Gm13847 - - 6 A3.3|6 12.57 cM predicted gene 13847 ncRNA 73693 Mm.35597 NM_028610 ENSMUSG00000058550 Dppa4 2410091M23Rik|C76608|ECAT15-1 - 16|16 B5 developmental pluripotency associated 4 protein-coding 668336 Gm9111 - - 10|10 D3 aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 pseudogene pseudo 100504184 Mm.441327 NR_045267 ENSMUSG00000087160 Gm16336 - - 7 E3|7 57.92 cM predicted gene 16336 ncRNA 109342 Mm.441070 NM_001033227 ENSMUSG00000042371 Slc5a10 C330021F16Rik|SGLT5 - 11|11 B2 solute carrier family 5 (sodium/glucose cotransporter), member 10 protein-coding 102467390 n-TTtgt2 n-Tt16 - 11 B1.2|11 nuclear encoded tRNA threonine 2 (anticodon TGT) tRNA 380698 Mm.339542 NM_199152 ENSMUSG00000061462 Obscn BC046431|Gm878|UNC89 - 11|11 B1.3 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF protein-coding 71323 Mm.158669 NM_027760 ENSMUSG00000030259 Rassf8 5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1 - 6|6 G3 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 protein-coding 76055 Mm.122725 NM_023799 ENSMUSG00000025220 Mgea5 Hy5|Ncoat|OGA - 19 C3|19 38.75 cM meningioma expressed antigen 5 (hyaluronidase) protein-coding 68961 Mm.274473 NM_026888 ENSMUSG00000030815 Phkg2 1500017I02Rik - 7|7 F3 phosphorylase kinase, gamma 2 (testis) protein-coding 102635855 XR_380693 Gm33091 - - 10 C2|10 predicted gene, 33091 ncRNA 105244517 Gm40111 - - 3|3 predicted gene, 40111 ncRNA 71353 5230401M06Rik - - 14|14 RIKEN cDNA 5230401M06 gene protein-coding 105247197 Gm42336 - - 4|4 predicted gene, 42336 ncRNA 100503347 Mm.483711 Gm19648 - - 5|5 57.77 cM predicted gene, 19648 unknown 102639682 Gm35937 - - 1|1 predicted gene, 35937 ncRNA 100504040 Gm17586 - - 11|11 84.36 cM predicted gene, 17586 ncRNA 14399 Mm.4915 NM_008068 ENSMUSG00000020428 Gabra6 GABA-ARalpha6|Gabra-6|alpha6 - 11 A5|11 25.03 cM gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6 protein-coding 52880 Mm.157091 D15Bwg0340e - - 15 54.61 cM DNA segment, Chr 15, Brigham & Women's Genetics 0340 expressed unknown 100043080 Gm14859 - - X D|X predicted gene 14859 pseudo 73689 Mm.124685 NM_028607 ENSMUSG00000057506 Bloc1s2 2410089B13Rik|BLOS2|Bloc1s2a - 19|19 C3 biogenesis of lysosomal organelles complex-1, subunit 2 protein-coding 102636660 Gm33665 - - 15|15 predicted gene, 33665 ncRNA 20088 Mm.16775 NM_011297 ENSMUSG00000025290 Rps24 - - 14|14 A3 ribosomal protein S24 protein-coding 100038806 Sicd1 - - - seizure-induced cell death 1 unknown 102640456 Mm.464395 Gm36513 - - 16|16 predicted gene, 36513 ncRNA 100113456 Secia4 - - - small effect CIA locus 4 unknown 100035025 Lgdr1 - - 15 19.26 cM liver Gapd decay rate 1 unknown 27222 Mm.482392 NM_013734 ENSMUSG00000007107 Atp1a4 - - 1 H3|1 79.54 cM ATPase, Na+/K+ transporting, alpha 4 polypeptide protein-coding 22255 Mm.42190 NM_013702 ENSMUSG00000029546 Uncx Chx4|Uncx4.1 - 5 G2|5 78.75 cM UNC homeobox protein-coding 61402 D5Mit160 - - 5 63.32 cM DNA segment, Chr 5, Massachusetts Institute of Technology 160 unknown 229279 Mm.316306 NM_053263 ENSMUSG00000059005 Hnrnpa3 2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3 - 2|2 C3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 384864 Mm.390083 NR_002928 Gm1943 - - 8|8 D3 WD repeat domain 70 pseudogene pseudo 105243554 XR_880285 Gm39443 - - 11 E1|11 predicted gene, 39443 ncRNA 271305 Mm.101022 NM_001081166 ENSMUSG00000016624 Phf21b A730032D07Rik - 15|15 E2 PHD finger protein 21B protein-coding 102636438 XR_378983 ENSMUSG00000110000 Gm33501 Gm45586 - 8 B2|8 predicted gene, 33501 ncRNA 17076 Mm.2074 NM_013825 ENSMUSG00000026980 Ly75 CD205|DEC-205|DEC205 - 2|2 C1.1 lymphocyte antigen 75 protein-coding 215707 Mm.389693 NM_144819 ENSMUSG00000037979 Ccdc92 AW050178|D5Bwg0834e - 5 F|5 63.85 cM coiled-coil domain containing 92 protein-coding 75509 Mm.233475 NM_029316 ENSMUSG00000059690 1700020N15Rik - - X|X A7.2 RIKEN cDNA 1700020N15 gene protein-coding 108168903 XR_001783992 Gm46827 - - 3 G3|3 predicted gene, 46827 ncRNA 330133 Mm.447264 NR_131054 ENSMUSG00000105218 Gm38413 A830083F22|Gm43248 - 5|5 E4 predicted gene, 38413 ncRNA 103962 Rf - - - rib fusion unknown 18669 Mm.146649 NM_011075 ENSMUSG00000028970 Abcb1b Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr - 5 A1|5 3.43 cM ATP-binding cassette, sub-family B (MDR/TAP), member 1B protein-coding 105242485 LOC105242485 - - - intelectin-1a protein-coding 100417511 Gm18659 - - 3|3 A1 predicted gene, 18659 pseudo 442818 9430025E04Rik - - 9|9 F3 RIKEN cDNA 9430025E04 gene protein-coding 621446 Gm6226 EG621446 - 7|7 B5 non-catalytic region of tyrosine kinase adaptor protein 2 pseudogene pseudo 102632499 XR_377995 Gm30557 - - 6 F1|6 predicted gene, 30557 ncRNA 66289 Mm.7150 NM_025470 ENSMUSG00000026531 Mptx1 1810030J14Rik|AV054416|Mptx - 1|1 H3 mucosal pentraxin 1 protein-coding 104066 Panc1 Pan-1|Pan1 - - pancreas protein 1 protein-coding 22709 Mm.293030 NM_009558 ENSMUSG00000023892 Zfp51 Zfp-51|zfec12 - 17 A3.2|17 11.4 cM zinc finger protein 51 protein-coding 108168258 XR_001781741 Gm46532 - - 15 D3|15 predicted gene, 46532 ncRNA 102639384 XR_384325 Gm35711 - - 15 E3|15 predicted gene, 35711 ncRNA 102631966 XR_384965 Gm30162 - - 16 C3.1|16 predicted gene, 30162 ncRNA 64294 Mm.29870 NM_022417 ENSMUSG00000026223 Itm2c 3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3 - 1|1 C5 integral membrane protein 2C protein-coding 51886 Mm.278922 NM_057172 ENSMUSG00000028034 Fubp1 9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4 - 3 H3|3 77.05 cM far upstream element (FUSE) binding protein 1 protein-coding 108167627 XR_001778957 Gm46094 - - 1 C3|1 predicted gene, 46094 ncRNA 68750 Mm.491109 NM_026830 ENSMUSG00000039087 Rreb1 1110037N09Rik|AA414966|B930013M22Rik - 13|13 A3.3 ras responsive element binding protein 1 protein-coding 227334 Mm.80484 NM_001033291 ENSMUSG00000005501 Usp40 B230215L03Rik|C730029K03 - 1|1 D ubiquitin specific peptidase 40 protein-coding 59290 Mm.46357 NM_021610 ENSMUSG00000000544 Gpa33 2010310L10Rik|2210401D16Rik|BB116197|mA33 - 1 H2.3|1 73.49 cM glycoprotein A33 (transmembrane) protein-coding 231004 Mm.406833 NM_173736 ENSMUSG00000096351 Samd11 BC026991|mr-s - 4|4 E2 sterile alpha motif domain containing 11 protein-coding 18796 Mm.215156 NM_177568 ENSMUSG00000040061 Plcb2 AI550384|B230205M18Rik|B230399N12 - 2 E5|2 59.43 cM phospholipase C, beta 2 protein-coding 100042775 Mm.273990 Gm4026 - - 2 E1|2 predicted gene 4026 protein-coding 51821 D17Leh119 - - - DNA segment, Chr 17, Lehrach 119 unknown 102465209 NR_105817 ENSMUSG00000098938 Mir6393 Gm27424|mmu-mir-6393 - 15|15 E3 microRNA 6393 ncRNA 72493 2610202C22Rik - - 10|10 RIKEN cDNA 2610202C22 gene protein-coding 434960 Mm.391359 NM_001025241 ENSMUSG00000094729 Gm20747 - - Y|Y C1 predicted gene, 20747 protein-coding 436467 Mm.359466 Trav14-1 EG436467|Gm5770 - 14|14 C2 T cell receptor alpha variable 14-1 other 67064 Mm.73777 NM_024190 ENSMUSG00000109901 Chmp1b 2810405I11Rik|Chmp1b1 - 18|18 E1 charged multivesicular body protein 1B protein-coding 102639948 XR_377229 Gm36140 - - 5 G3|5 predicted gene, 36140 ncRNA 211006 Mm.244719 NM_172490 ENSMUSG00000029173 Sepsecs AA986712|D5Ertd135e|SLA|SecS - 5 C1|5 28.44 cM Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase protein-coding 102633639 XR_001783933 Gm31420 - - 3 F2.2|3 predicted gene, 31420 ncRNA 108167949 Gm46309 - - 12 A1.2|12 predicted gene, 46309 pseudo 102634095 Gm31761 - - 18|18 predicted gene, 31761 ncRNA 100417650 Gm18739 - - 18|18 D3 mitochondrial ribosomal protein L35 pseudogene pseudo 229320 Mm.131502 NM_153384 ENSMUSG00000043850 Clrn1 A130002D11Rik|USH3|Ush3a|clarin-1 - 3|3 D clarin 1 protein-coding 233204 Mm.27567 NM_144924 ENSMUSG00000038520 Tbc1d17 BC017607 - 7|7 B3 TBC1 domain family, member 17 protein-coding 100417767 Gm3348 100041456|Gm17050|Gm17128 - 14|14 A1 esterase D/formylglutathione hydrolase pseudogene pseudo 58804 Mm.34268 NM_021454 ENSMUSG00000063838 Cdc42ep5 1700027J19Rik|2010007O02Rik|Borg3|C85526|CEP5 - 7|7 A1 CDC42 effector protein (Rho GTPase binding) 5 protein-coding 19386 Mm.431695 NM_011240 ENSMUSG00000003226 Ranbp2 A430087B05Rik|AI256741|NUP358 - 10 B4|10 29.34 cM RAN binding protein 2 protein-coding 102638628 Gm15580 - - 7 F5|7 88.26 cM predicted gene 15580 pseudo 619290 Mm.484144 NM_001033796 A230072I06Rik - - 8|8 A1.1 RIKEN cDNA A230072I06 gene unknown 102639566 Mm.417208 NR_110420 ENSMUSG00000097754 Ptgs2os2 Gm26687|Linc-cox2|Lincrna-cox2 - 1 G1|1 prostaglandin-endoperoxide synthase 2, opposite strand 2 ncRNA 52570 Mm.22361 NM_177471 ENSMUSG00000049588 Ccdc69 2210021E03Rik|D11Ertd461e - 11 B1.3|11 32.13 cM coiled-coil domain containing 69 protein-coding 102639048 XR_385596 Gm35456 - - 17 B3|17 predicted gene, 35456 ncRNA 66988 Mm.286830 NM_024434 ENSMUSG00000039682 Lap3 2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps - 5 B3|5 24.98 cM leucine aminopeptidase 3 protein-coding 14705 Mm.345134 NM_008144 ENSMUSG00000071657 Bscl2 2900097C17Rik|AI046355|Gng3lg - 19 A|19 5.76 cM Berardinelli-Seip congenital lipodystrophy 2 (seipin) protein-coding 105247032 XR_880793 Gm42214 - - 3 B|3 predicted gene, 42214 ncRNA 102634415 Gm29503 - - Y|Y predicted gene 29503 pseudo 100381258 D930001M23Rik - - - Riken cDNA D930001M23 gene protein-coding 62261 D18Mit88 - - 18 17.99 cM DNA segment, Chr 18, Massachusetts Institute of Technology 88 unknown 110240 Mlvi4 Mlvi-4 - 15|15 Moloney-MuLV integration site 4 protein-coding 110120369 LOC110120369 - - - VISTA enhancer mm573 biological-region 667672 XM_011247698 Gm8754 EG667672 - X B|X predicted gene 8754 pseudo 105244806 Gm40351 - - 5|5 predicted gene, 40351 protein-coding 667711 Gm8776 EG667711 - 14|14 C2 ribosomal protein L17 pseudogene pseudo 216134 Mm.206159 NM_172134 ENSMUSG00000032788 Pdxk 2310036D04Rik|AA119688|C77999 - 10 C1|10 39.72 cM pyridoxal (pyridoxine, vitamin B6) kinase protein-coding 102635386 LOC102635386 - - 9 E3.3 protein transport protein Sec61 subunit gamma-like pseudo 100504116 Mm.36529 NM_001360790 Brd3os A230069D13|D2Bwg1423e|Gm20071 - 2 A3|2 19.38 cM bromodomain containing 3, opposite strand protein-coding 672445 Mm.398967 XR_001782490 Gm10266 - - 18 D3|18 predicted gene 10266 ncRNA 100142658 NM_001163773 Gm10222 - - 1 A5|1 predicted gene 10222 pseudo 408068 Mm.435551 NM_175676 ENSMUSG00000048280 Zfp738 3830402I07Rik|6720487G11Rik - 13|13 B3 zinc finger protein 738 protein-coding 16619 Mm.445911 NM_020268 ENSMUSG00000063177 Klk1b27 Gk27|Klk21l|Klk27|mGK-27 - 7 B3|7 28.54 cM kallikrein 1-related peptidase b27 protein-coding 18373 Mm.377111 NM_146861 ENSMUSG00000069430 Olfr9 MOR269-3 - 10|10 D3 olfactory receptor 9 protein-coding 319956 A430068E04Rik - - 2|2 RIKEN cDNA A430068E04 gene protein-coding 217304 Mm.185355 NM_199221 ENSMUSG00000063193 Cd300lb CLM-7|Clm7|Gm253|LMIR5 - 11|11 E2 CD300 molecule like family member B protein-coding 665891 Mm.394141 NM_001048196 ENSMUSG00000063251 Krtap4-1 A030010K20Rik - 11|11 D keratin associated protein 4-1 protein-coding 102631879 XR_381987 Gm30101 - - 12 F1|12 predicted gene, 30101 ncRNA 100416827 Gm18284 - - 15|15 E1 TM2 domain containing 1 pseudogene pseudo 102640996 Gm36922 - - 8|8 predicted gene, 36922 ncRNA 105247071 XR_880915 Gm42244 - - 5 B1|5 predicted gene, 42244 ncRNA 109803 Gv2 Gv-2 - - Gross virus antigen 2 protein-coding 14257 Mm.3291 NM_008029 ENSMUSG00000020357 Flt4 AI323512|Chy|Flt-4|VEGFR-3|VEGFR3 - 11 B1.2|11 29.69 cM FMS-like tyrosine kinase 4 protein-coding 27638 D13Die26 - - 13 53.01 cM DNA segment, Chr 13, Dietrich 26 unknown 105242862 XR_881870 Gm26802 - - 7 A3|7 predicted gene, 26802 ncRNA 102639135 XR_378750 Gm16347 - - 8 A1.2|8 8.43 cM predicted gene 16347 ncRNA 627891 Mm.389409 LOC627891 - - - uncharacterized LOC627891 ncRNA 117291 Dyscalc2 - - 4 61.67 cM dystrophic cardiac calcinosis 2 unknown 66262 Mm.64065 NM_025454 ENSMUSG00000026283 Ing5 1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768 - 1|1 D inhibitor of growth family, member 5 protein-coding 665035 Gm15560 EG665035 - 10 A1|10 predicted gene 15560 pseudo 100124547 Vmn2r-ps4 - - 3|3 E1 vomeronasal 2, receptor, pseudogene 4 pseudo 215303 Mm.40329 NM_144817 ENSMUSG00000016179 Camk1g CLICK-III|CaMKIgamma - 1 H6|1 97.74 cM calcium/calmodulin-dependent protein kinase I gamma protein-coding 381959 XM_992620 Gm1096 - - 7|7 A3 predicted gene 1096 protein-coding 111962 Mltr1 - - - modified polytropic long terminal repeat containing proviral locus 1 other 102632964 XR_380102 Gm30906 - - 10 A1|10 predicted gene, 30906 ncRNA 101056060 Gm28480 - - Y|Y predicted gene 28480 protein-coding 503851 Mm.440488 B930025B16Rik - - - RIKEN cDNA B930025B16 gene protein-coding 102638763 Gm12615 - - 11 B2|11 37.81 cM predicted gene 12615 pseudo 627160 Gm11687 - - 2|2 G1 ribosomal protein S2 pseudogene pseudo 105244647 XR_867996 Gm40222 - - 4 C7|4 predicted gene, 40222 ncRNA 231805 Mm.379385 NM_153510 ENSMUSG00000046245 Pilra AV021745|FDF03 - 5|5 G2 paired immunoglobin-like type 2 receptor alpha protein-coding 105244180 XR_866360 Gm39833 - - 2 C1.3|2 predicted gene, 39833 ncRNA 102639597 Gm35871 - - 5|5 predicted gene, 35871 protein-coding 384214 Mm.489863 NM_001001804 ENSMUSG00000033805 Ephx4 Abhd7|Ephxrp|Gm1382 - 5|5 E5 epoxide hydrolase 4 protein-coding 319587 Mm.358971 NR_030689 ENSMUSG00000097032 4930539J05Rik 8030475D13Rik - 3|3 G3 RIKEN cDNA 4930539J05 gene ncRNA 18102 Mm.439702 NM_008704 ENSMUSG00000037601 Nme1 AL024257|NDPK-A|NM23-M1|NM23A - 11|11 D NME/NM23 nucleoside diphosphate kinase 1 protein-coding 56519 Mm.45276 NM_019728 ENSMUSG00000059230 Defb4 2310001F05Rik|BD-4 - 8|8 A1.3 defensin beta 4 protein-coding 110232 Igh-Ns3 - - - immunoglobulin heavy chain Ns3 protein-coding 621427 Mm.389742 NR_152168 ENSMUSG00000068601 Gm10244 Anmkrn1 - 6 B1|6 predicted gene 10244 ncRNA 27385 Mm.45207 NM_013779 ENSMUSG00000056972 Magel2 Mage-l2|NDNL1|nM15|ns7 - 7 C|7 34.37 cM melanoma antigen, family L, 2 protein-coding 102637272 XR_390477 Gm34132 - - 4 A5|4 predicted gene, 34132 ncRNA 102636179 XR_377799 Gm33319 - - 6 C3|6 predicted gene, 33319 ncRNA 100101941 Trav22 - - 14|14 C2 T cell receptor alpha variable 22 pseudo 105245157 XR_871648 Gm40649 - - 10 B3|10 predicted gene, 40649 ncRNA 110732 Tex2-rs1 Tax4-rs1 - - testis expressed gene 2, related sequence 1 protein-coding 102638971 XR_380884 ENSMUSG00000112871 Gm35404 - - 10 D2|10 predicted gene, 35404 ncRNA 71617 Mm.210949 NM_198296 ENSMUSG00000039901 9130011E15Rik AI431055|AW050122 - 19|19 C3 RIKEN cDNA 9130011E15 gene protein-coding 208256 Akp-ps1 EG208256|Gm4752 - 1|1 C5 alkaline phosphatase pseudogene 1 pseudo 100035657 Efw - - 6 32.56 cM epididymal fat weight unknown 19337 Mm.2015 NM_011228 ENSMUSG00000031104 Rab33a Rabs10 - X 25.68 cM|X A5 RAB33A, member RAS oncogene family protein-coding 105246453 XR_877459 Gm26507 - - 18 D3|18 predicted gene, 26507 ncRNA 67426 Mm.38330 NM_023341 ENSMUSG00000026489 Coq8a 4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451 - 1|1 H4 coenzyme Q8A protein-coding 105244549 XR_867618 Gm40142 - - 3 G1|3 predicted gene, 40142 ncRNA 100036023 Mofp5 Mof5 - - mesenteric and omental fat pad weight 5 unknown 21221 T(5;7)30Ad T30Ad - - reciprocal translocation, Chr 5 and 7, Adler 30 other 100417464 Gm18626 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 243944 Mm.333806 NM_207248 ENSMUSG00000091692 4930433I11Rik Gm481 - 7|7 B3 RIKEN cDNA 4930433I11 gene protein-coding 100038397 Gm44113 Gm10450 - - predicted gene, 44113 unknown 62099 D11Mit81 - - 11 15.29 cM DNA segment, Chr 11, Massachusetts Institute of Technology 81 unknown 546205 XR_001782780 ENSMUSG00000094601 Gm5926 EG546205 - X|X A3.1 predicted gene 5926 protein-coding 93679 Mm.392177 NM_053100 ENSMUSG00000025034 Trim8 AA408830|BB006755|GERP|Rnf27 - 19|19 C3 tripartite motif-containing 8 protein-coding 100503435 Mm.384223 AW124847 - - 19|19 expressed sequence AW124847 unknown 85078 D8Mit77 - - 8 39.33 cM DNA segment, Chr 8, Massachusetts Institute of Technology 77 unknown 108449 Pmv60 Pmv-60 - - polytropic murine leukemia virus 60 other 100036188 Egaq3 - - - early growth adjusted QTL 3 unknown 100316812 NR_035457 ENSMUSG00000089324 Mir1936 mir-1936|mmu-mir-1936 - 12 E|12 52.0 cM microRNA 1936 ncRNA 238690 Mm.306358 NM_001001152 ENSMUSG00000055480 Zfp458 BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2 - 13 B3|13 34.54 cM zinc finger protein 458 protein-coding 100303737 Mm.419851 Gm11175 - - 8|8 predicted gene 11175 unknown 111686 Mpmv7 Env-5|Mpmv-7|Xmmv-5 - - modified polytropic murine leukemia virus 7 other 61229 D1Mit236 - - 1 23.69 cM DNA segment, Chr 1, Massachusetts Institute of Technology 236 unknown 102632737 XM_017319385 Gm30732 - - 2 F1|2 predicted gene, 30732 protein-coding 258005 Olfr1422-ps1 MOR239-8P - 19|19 A olfactory receptor 1422, pseudogene 1 pseudo 100124564 Vmn2r-ps71 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 71 pseudo 102466792 NR_106005 ENSMUSG00000098319 Mir7038 Gm27955|mmu-mir-7038 - 5|5 G2 microRNA 7038 ncRNA 80893 Mm.72799 NM_030709 ENSMUSG00000032268 Tmprss5 spinesin - 9|9 A5.3 transmembrane protease, serine 5 (spinesin) protein-coding 67493 Mm.45748 NM_026197 ENSMUSG00000010554 Mettl16 2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d - 11|11 B5 methyltransferase like 16 protein-coding 77492 8030456M14Rik - - 19|19 RIKEN cDNA 8030456M14 gene protein-coding 100048997 Mm.437797 AW743351 - - - expressed sequence AW743351 unknown 100418453 Gm19221 - - 12|12 C2 protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform pseudogene pseudo 269614 Mm.30042 NM_172990 ENSMUSG00000029056 Pank4 D030031I12Rik|R75150 - 4|4 E2 pantothenate kinase 4 protein-coding 99458 Mm.436745 BB166591 - - - expressed sequence BB166591 protein-coding 28011 D3Wsu106e - - 3 45.25 cM DNA segment, Chr 3, Wayne State University 106, expressed protein-coding 76133 Mm.436043 NR_029446 ENSMUSG00000097577 6230400D17Rik - - 14|14 A3 RIKEN cDNA 6230400D17 gene ncRNA 27993 Mm.289667 NM_178601 ENSMUSG00000026127 Imp4 AA409888|AV031295|D1Wsu40e - 1 B|1 13.22 cM IMP4, U3 small nucleolar ribonucleoprotein protein-coding 22089 Tsg101-ps - - 15|15 D1 tumor susceptibility gene 101, pseudogene pseudo 546714 Gm5970 EG546714 - 18|18 D3 interferon inducible GTPase 1 pseudogene pseudo 105245362 Gm40830 - - 13|13 predicted gene, 40830 ncRNA 52773 D15Aus76rse - - - DNA segment, Chr 15, Austin-76 related sequence expressed unknown 112217 Daq13 - - 15 16.74 cM directional asymmetry QTL 13 unknown 20686 Mm.8637 NM_011449 ENSMUSG00000001948 Spa17 Sp17 - 9|9 A4 sperm autoantigenic protein 17 protein-coding 78531 C330026N13Rik - - 13|13 RIKEN cDNA C330026N13 gene unknown 108167650 XR_001779153 Gm46110 - - 9 A5.2|9 predicted gene, 46110 ncRNA 100127111 Mm.292489 NR_004445 ENSMUSG00000065087 Snord22 Rnu22|U22 - 19|19 A small nucleolar RNA, C/D box 22 snoRNA 102638222 Gm34834 - - 11|11 predicted gene, 34834 ncRNA 75430 Mm.284491 NM_027532 ENSMUSG00000030649 Anapc15 3200002M19Rik|6330414C15Rik|APC15 - 7|7 E2 anaphase prompoting complex C subunit 15 protein-coding 71564 Mm.35802 NM_027829 ENSMUSG00000055862 Izumo4 9030607L17Rik|AI550407 - 10|10 C1 IZUMO family member 4 protein-coding 111966 Mltr4 - - - modified polytropic long terminal repeat containing proviral locus 4 other 404462 Olfr1059-ps1 GA_x5J8B7W2GLP-600-794|MOR190-6_p - 2|2 D olfactory receptor 1059, pseudogene 1 pseudo 102639199 XR_387346 Gm35562 - - 1 E3|1 predicted gene, 35562 ncRNA 100861500 NR_046153 ENSMUSG00000096170 n-R5s146 Rn5s29 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 146 rRNA 63986 Mm.194536 NM_022024 ENSMUSG00000060791 Gmfg 0610039G16Rik|2310057N07Rik|AI324845 - 7|7 B1 glia maturation factor, gamma protein-coding 73633 1700121I08Rik - - 9|9 RIKEN cDNA 1700121I08 gene protein-coding 208691 Mm.193670 NM_177586 ENSMUSG00000050192 Eif5a2 9630038B20|eIF5AII - 3|3 A3 eukaryotic translation initiation factor 5A2 protein-coding 71425 Mm.389341 NM_175167 ENSMUSG00000067998 Bpifb9a 4833413D08Rik|AI413838 - 2|2 H1 BPI fold containing family B, member 9A protein-coding 16370 Mm.261591 NM_010572 ENSMUSG00000054667 Irs4 IRS-4 - X F2|X 62.43 cM insulin receptor substrate 4 protein-coding 111984 Derm1 - - 9 33.34 cM dermatitis 1 unknown 226409 Mm.425048 NM_027678 ENSMUSG00000036086 Zranb3 4933425L19Rik|AH2|AI316834|C730006D09 - 1|1 E3 zinc finger, RAN-binding domain containing 3 protein-coding 359928 DXMgc62 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 62 unknown 102637019 Gm33932 - - 5|5 predicted gene, 33932 ncRNA 108168657 XM_017318868 LOC108168657 - - Y A1 Y-linked testis-specific protein 1-like protein-coding 71310 Mm.24031 NM_027758 ENSMUSG00000031709 Tbc1d9 4933431N12Rik|AI847101|AW490653|C76116 - 8|8 C2 TBC1 domain family, member 9 protein-coding 83457 Mm.388703 NM_031261 ENSMUSG00000071815 Fthl17e Fthl17 - X|X A1.1 ferritin, heavy polypeptide-like 17, member E protein-coding 404325 Mm.355578 NM_207563 ENSMUSG00000075187 Olfr1057 GA_x5J8B7TRQ4E-1174-939|GA_x5J8B7TY464-2-187|MOR185-11 - 2|2 D olfactory receptor 1057 protein-coding 107780 Cd79bl-rs4 Igbl4|P8.6-4 - - CD79B antigen like related sequence 4 protein-coding 102465632 NR_106011 ENSMUSG00000098583 Mir7044 Gm27354|mmu-mir-7044 - 6|6 F1 microRNA 7044 ncRNA 100416098 Gm14575 - - X|X A4 tubulin, gamma 1 pseudogene pseudo 111117 Kras1-ps Kras-1 - - Kirsten rat sarcoma oncogene 1, pseudogene pseudo 100036154 W3q6 - - - weight 3 weeks QTL 6 unknown 72374 2210416J07Rik - - 13|13 RIKEN cDNA 2210416J07 gene protein-coding 108270 Eif4a-ps9 - - - eukaryotic translation initiation factor 4A, pseudogene 9 pseudo 102637021 XR_879046 LOC102637021 - - 8 C3 uncharacterized LOC102637021 ncRNA 114267 Manh3 QTL-SH2.2|QTL-SH3.1 - - mandible shape 3 unknown 217593 Mm.32835 NM_172577 ENSMUSG00000035472 Slc25a21 9930033G19Rik|A630030I10|BB158148 - 12|12 C1 solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 protein-coding 102632225 XR_387637 Gm30360 - - 5 F|5 predicted gene, 30360 ncRNA 100418066 Gm12202 - - 11|11 B1.3 Rap guanine nucleotide exchange factor (GEF) 2 pseudogene pseudo 69698 Mm.258262 NM_027172 ENSMUSG00000027463 Slc52a3 2310046K01Rik|RFT2 - 2|2 G3 solute carrier protein family 52, member 3 protein-coding 102637650 Gm17412 - - X|X 49.81 cM predicted gene, 17412 protein-coding 71835 Mm.274904 NM_133737 ENSMUSG00000062190 Lancl2 1700003F10Rik - 6|6 B3 LanC (bacterial lantibiotic synthetase component C)-like 2 protein-coding 102633354 Gm31199 - - 1|1 predicted gene, 31199 ncRNA 50721 Mm.25643 NM_181586 ENSMUSG00000034748 Sirt6 2810449N18Rik|AI043036|Sir2l6 - 10 C1|10 39.72 cM sirtuin 6 protein-coding 100418291 Gm13444 - - 2|2 B transmembrane emp24 protein transport domain containing 9 pseudogene pseudo 78109 Mm.437519 Lrp8os1 4930430J20Rik - 4|4 C7 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1 unknown 242109 Mm.358911 NM_172863 ENSMUSG00000050064 Zfp697 9430053K19|AI467503|Znf697 - 3|3 F2.2 zinc finger protein 697 protein-coding 100861715 XR_140633 Gm21158 - - 4 A5|4 predicted gene, 21158 pseudo 15170 Mm.271799 NM_013545 ENSMUSG00000004266 Ptpn6 70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me - 6 F2|6 59.17 cM protein tyrosine phosphatase, non-receptor type 6 protein-coding 62196 D15Mit66 - - 15 29.8 cM DNA segment, Chr 15, Massachusetts Institute of Technology 66 unknown 108169193 Gm44768 - - 6 C1|6 predicted gene 44768 pseudo 73545 Mm.482512 NM_028567 ENSMUSG00000027942 1700094D03Rik - - 3|3 F1 RIKEN cDNA 1700094D03 gene protein-coding 13064 Cycs-ps1 - - 9|9 D cytochrome c, pseudogene 1 pseudo 192885 Mm.425872 BC005512 BC062922 - 14|14 E4 cDNA sequence BC005512 unknown 20416 Mm.86595 NM_011368 ENSMUSG00000042626 Shc1 Shc|ShcA|p66|p66shc - 3 F1|3 39.11 cM src homology 2 domain-containing transforming protein C1 protein-coding 231238 Mm.235020 NM_172710 ENSMUSG00000029189 Sel1l3 2310045A20Rik|AI429585|mKIAA0746 - 5|5 C1 sel-1 suppressor of lin-12-like 3 (C. elegans) protein-coding 11891 Mm.34867 NM_023635 ENSMUSG00000032202 Rab27a 2210402C08Rik|2410003M20Rik|4933437C11Rik|ash - 9 D|9 40.08 cM RAB27A, member RAS oncogene family protein-coding 407803 Mm.250393 NR_045146 ENSMUSG00000092564 BC051226 - - 17 B1|17 cDNA sequence BC051226 ncRNA 100417787 Gm18825 - - 16|16 C3.1 pyruvate dehydrogenase (lipoamide) beta pseudogene pseudo 791408 Mm.482652 Gm16496 - - - predicted gene 16496 unknown 110333 Mm.429764 NR_028262 ENSMUSG00000112117 Rmst 100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms - 10 C2|10 46.68 cM rhabdomyosarcoma 2 associated transcript (non-coding RNA) ncRNA 102635582 XR_381898 Gm32876 - - 12 F1|12 predicted gene, 32876 ncRNA 108167548 XR_001778644 Gm45855 - - 8 D3|8 40S ribosomal protein S2 pseudogene pseudo 100416784 Gm15826 - - 1|1 C3 histidyl-tRNA synthetase pseudogene pseudo 100043757 Mm.48711 NM_001099328 ENSMUSG00000050600 Zfp831 - - 2|2 H4 zinc finger protein 831 protein-coding 666783 Gm8285 EG666783 - 7|7 E1 aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 pseudogene pseudo 212753 Gm4779 EG212753 - X|X D predicted gene 4779 protein-coding 269855 Mm.44190 NM_173008 ENSMUSG00000035279 Ssc5d A430110N23Rik|S5D-SRCRB - 7|7 A1 scavenger receptor cysteine rich family, 5 domains protein-coding 108634 Edv2 - - - endogenous sequence related to the Duplan murine retrovirus 2 other 102636013 XR_389477 Gm28050 - - 5 E5|5 predicted gene, 28050 ncRNA 101056306 LOC101056306 - - - zinc finger protein 665-like pseudo 70261 Mm.96997 NM_027363 ENSMUSG00000030865 Chp2 2010110P09Rik|Cbhp2 - 7|7 F2 calcineurin-like EF hand protein 2 protein-coding 723974 NR_030495 ENSMUSG00000070108 Mir500 Mirn500|mir-500|mmu-mir-500 - X A1.1|X microRNA 500 ncRNA 433634 Mm.331280 NM_001013805 Gm5546 EG433634 - 3 F2.2|3 predicted gene 5546 unknown 107734 Mm.26614 NM_027098 ENSMUSG00000026087 Mrpl30 2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28 - 1|1 B mitochondrial ribosomal protein L30 protein-coding 75358 4930554B03Rik - - 5|5 RIKEN cDNA 4930554B03 gene protein-coding 100861731 Gm21171 - - Y|Y predicted gene, 21171 protein-coding 109846 Ly31 Ly-31|Ly-m31 - - lymphocyte antigen 31 protein-coding 59036 Mm.46662 NM_021532 ENSMUSG00000044548 Dact1 4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3 - 12|12 C3 dishevelled-binding antagonist of beta-catenin 1 protein-coding 108870 Mm.397310 4930447K04Rik - - 19|19 RIKEN cDNA 4930447K04 gene protein-coding 102642976 XR_865329 Gm38647 - - 1 B|1 predicted gene, 38647 ncRNA 105247116 Mm.488220 NR_155499 Gm42274 - - 4|4 predicted gene, 42274 ncRNA 111315 Hmgn2-rs15 Hmg17-rs15 - - high mobility group nucleosomal binding domain 2, related sequence 15 pseudo 101055951 XM_003945845 LOC101055951 - - - PRAME family member 8-like protein-coding 108169020 XR_001784765 LOC108169020 - - 5 A1 uncharacterized LOC108169020 ncRNA 100272221 Mm.478766 NR_027452 Gm17801 - - 17|17 A3.3 predicted gene, 17801 ncRNA 105246669 Gm41921 - - 1|1 predicted gene, 41921 ncRNA 252837 Mm.269254 NM_145700 ENSMUSG00000079355 Ackr4 A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1 - 9|9 F1 atypical chemokine receptor 4 protein-coding 105246277 XR_876811 Gm41582 - - 17 B3|17 predicted gene, 41582 ncRNA 241201 Mm.213407 NM_172853 ENSMUSG00000026312 Cdh7 9330156F07Rik|CDH7L1 - 1|1 E2.1 cadherin 7, type 2 protein-coding 12330 Mm.248827 NM_007597 ENSMUSG00000020368 Canx 1110069N15Rik|AI988026|Cnx|D11Ertd153e - 11 B1.3|11 30.46 cM calnexin protein-coding 108169130 XR_001785196 Gm46951 - - 6 A1|6 predicted gene, 46951 ncRNA 97567 C87161 - - - expressed sequence C87161 unknown 53318 Mm.282900 NM_016798 ENSMUSG00000031636 Pdlim3 AI463105|ALP|Actn2lp - 8|8 B1.1 PDZ and LIM domain 3 protein-coding 102639208 XR_384106 Gm38516 - - 15 D1|15 predicted gene, 38516 ncRNA 105244251 Mm.453002 XR_866592 8030431J09Rik - - 2|2 E2 RIKEN cDNA 8030431J09 gene ncRNA 102639904 Gm36105 - - 14|14 predicted gene, 36105 ncRNA 61479 D7Mit140 - - 7 88.32 cM DNA segment, Chr 7, Massachusetts Institute of Technology 140 unknown 111383 Mar1 L2a - - matrix associated region 1 other 102641104 Gm38533 - - 11|11 predicted gene, 38533 ncRNA 193116 Mm.28200 NM_148673 ENSMUSG00000020409 Slu7 AU018913|D11Ertd730e|D3Bwg0878e - 11|11 B1.1 SLU7 splicing factor homolog (S. cerevisiae) protein-coding 320030 B930086L07Rik - - 7|7 RIKEN cDNA B930086L07 gene protein-coding 103742 Mm.259614 NM_025559 ENSMUSG00000002580 Mien1 1810046J19Rik|AI463380|Rdx12 - 11|11 D migration and invasion enhancer 1 protein-coding 100169866 Mm.450742 Gm10933 - - - predicted gene 10933 unknown 105247305 XR_882467 LOC105247305 - - - uncharacterized LOC105247305 ncRNA 66205 Mm.227281 NM_025422 ENSMUSG00000060703 Cd302 1110055L24Rik|AI159627 - 2|2 C1.1 CD302 antigen protein-coding 100316706 NR_035481 ENSMUSG00000088373 Mir1956 mir-1956|mmu-mir-1956 - 3 G3|3 64.3 cM microRNA 1956 ncRNA 545461 Gm14026 - - 2|2 F1 SET domain containing 3 pseudogene pseudo 102635467 Mm.406404 XR_881378 Gm11412 - - 4|4 C3 predicted gene 11412 ncRNA 23918 Mm.6065 NM_011830 ENSMUSG00000062867 Impdh2 IMPD - 9|9 F2 inosine monophosphate dehydrogenase 2 protein-coding 671052 Gm9516 - - X|X D predicted gene 9516 pseudo 80289 Mm.259969 NM_030257 ENSMUSG00000035840 Lysmd3 1110030H10Rik|BC003322 - 13|13 C3 LysM, putative peptidoglycan-binding, domain containing 3 protein-coding 102640547 Mm.373574 XR_001778198 Gm36584 Gm44915 - 7 D3|7 predicted gene, 36584 ncRNA 100036448 Idd16.1 Idd16a - - insulin dependent diabetes susceptibility 16.1 unknown 625995 Mm.454508 NR_033643 Gm6642 EG625995 - 19|19 C1 ubiquitin-like 5 pseudogene pseudo 433801 Mm.276881 NM_001013808 ENSMUSG00000078502 Gm13212 - - 4 E1|4 predicted gene 13212 protein-coding 218314 Mm.289695 NM_177622 ENSMUSG00000057842 Zfp595 A230042K10Rik|Rslcan23 - 13|13 B3 zinc finger protein 595 protein-coding 634323 Gm7132 EG634323 - 3 A1|3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 12325 Mm.235182 NM_178597 ENSMUSG00000021820 Camk2g Camkg - 14|14 A3 calcium/calmodulin-dependent protein kinase II gamma protein-coding 109280027 LOC109280027 Mm213 - - VISTA enhancer mm213 biological-region 108168146 XR_001781212 Gm46447 - - 14 B|14 predicted gene, 46447 ncRNA 12518 Mm.1355 NM_007655 ENSMUSG00000003379 Cd79a Ig-alpha|Iga|Igalpha|Ly-54|Ly54|mb-1 - 7 A3|7 13.49 cM CD79A antigen (immunoglobulin-associated alpha) protein-coding 111514 Xmv6 Xmv-6 - - xenotropic murine leukemia virus 6 other 213945 Mm.297404 NM_001037865 ENSMUSG00000068794 Col28a1 Col28|Gm466 - 6|6 A1 collagen, type XXVIII, alpha 1 protein-coding 73049 Mm.400752 2900054C01Rik - - X|X RIKEN cDNA 2900054C01 gene protein-coding 111604 Xmv19 Xmv-19 - - xenotropic murine leukemia virus 19 other 100042841 Gm4059 - - 13|13 C3 ribosomal protein L13A-like pseudogene pseudo 100417252 Gm18482 - - 6|6 A2 crumbs homolog 1 pseudogene pseudo 100503763 Gm19880 - - 7 B1|7 16.82 cM cytochrome c, somatic pseudogene pseudo 665117 Gm7500 EG665117 - 1 H2.1|1 predicted gene 7500 pseudo 791417 Mm.451219 NR_033505 ENSMUSG00000068062 Gm14164 - - 2 G3|2 predicted gene 14164 ncRNA 628855 Gm6923 EG628855 - X|X A1.3 predicted pseudogene 6923 protein-coding 14783 Mm.273117 NM_010345 ENSMUSG00000020176 Grb10 5730571D09Rik|AI325020|Meg1|mKIAA0207 - 11 A1|11 7.15 cM growth factor receptor bound protein 10 protein-coding 70348 Mm.53469 NM_027394 ENSMUSG00000032415 Ube2cbp 2610018I03Rik|Ube3d - 9|9 E3.1 ubiquitin-conjugating enzyme E2C binding protein protein-coding 57811 Mm.20460 NM_021340 ENSMUSG00000021804 Rgr - - 14|14 B retinal G protein coupled receptor protein-coding 665244 Gm7552 EG665244 - 15|15 D1 predicted gene 7552 pseudo 102467536 n-TGtcc3 n-Tg22 - 1 H3|1 nuclear encoded tRNA glycine 3 (anticodon TCC) tRNA 71711 Mm.27697 NM_027877 ENSMUSG00000024906 Mus81 1200008A18Rik|AI182501|AW045863 - 19|19 A MUS81 structure-specific endonuclease subunit protein-coding 14712 Mm.29114 NM_010322 ENSMUSG00000031985 Gnpat AU019525|D1Ertd819e|DHAPAT - 8 E2|8 72.81 cM glyceronephosphate O-acyltransferase protein-coding 75881 Mm.483402 NM_175227 ENSMUSG00000051074 4930579K19Rik - - 9|9 E3.3 RIKEN cDNA 4930579K19 gene ncRNA 27578 D5Buc34 393M12.SP6 - 5 38.44 cM DNA segment, Chr 5, Bucan 34 unknown 102638611 Mm.363799 NR_136881 ENSMUSG00000111982 Gm35135 - - 12 C1|12 predicted gene, 35135 ncRNA 258424 Mm.377493 NM_146432 ENSMUSG00000094140 Olfr1512 MOR223-5 - 14|14 C2 olfactory receptor 1512 protein-coding 78774 Mm.136347 NM_175280 ENSMUSG00000037143 Cfap61 4930529M08Rik|BB178539|BC024760 - 2|2 G1 cilia and flagella associated protein 61 protein-coding 108168289 LOC108168289 - - 16 B1 non-histone chromosomal protein HMG-17 pseudogene pseudo 100041019 Gm3099 - - 14 A1|14 predicted gene 3099 protein-coding 22349 Mm.471601 NM_009509 ENSMUSG00000026175 Vil1 Vil - 1 C3|1 38.54 cM villin 1 protein-coding 78720 D530035G10Rik - - 3|3 RIKEN cDNA D530035G10 gene protein-coding 18707 Mm.229108 NM_008840 ENSMUSG00000039936 Pik3cd 2410099E07Rik|2610208K16Rik|AW545373|p110delta - 4|4 E2 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta protein-coding 105245885 Gm41267 - - 15|15 predicted gene, 41267 ncRNA 102638338 Gm14901 - - X D|X 43.72 cM predicted gene 14901 pseudo 492955 Cocia6 - - 5 20.2 cM cocaine induced activation 6 unknown 108755 Mm.1182 NM_175364 ENSMUSG00000045854 Lyrm2 2610208E05Rik - 4|4 A5 LYR motif containing 2 protein-coding 17087 Mm.116844 NM_016923 ENSMUSG00000025779 Ly96 ESOP-1|MD-2|MD2 - 1|1 A3 lymphocyte antigen 96 protein-coding 56708 Mm.347919 NM_019952 ENSMUSG00000040663 Clcf1 BSF-3|Bsf3|CLC|NNT-1 - 19|19 A cardiotrophin-like cytokine factor 1 protein-coding 78732 E130303B20Rik - - 17|17 RIKEN cDNA E130303B20 gene protein-coding 66236 Mm.268546 NR_027817 ENSMUSG00000072694 1500011B03Rik AI415201|AV141149|AW556386 - 5|5 F RIKEN cDNA 1500011B03 gene ncRNA 26568 Mm.45519 NM_011988 ENSMUSG00000027932 Slc27a3 Acsvl3|FATP-3|FATP3|Vlcs-3 - 3|3 F1 solute carrier family 27 (fatty acid transporter), member 3 protein-coding 13011 Mm.12965 NM_009977 ENSMUSG00000068129 Cst7 Cmap - 2|2 G3 cystatin F (leukocystatin) protein-coding 625753 Gm6618 EG625753 - 17|17 A1 serologically defined colon cancer antigen 3 pseudogene pseudo 105243653 XR_880365 Gm39491 - - 11 E2|11 predicted gene, 39491 ncRNA 75725 Mm.212411 NM_029404 ENSMUSG00000029629 Phf14 1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783 - 6|6 A1 PHD finger protein 14 protein-coding 108167865 XR_001780129 Gm46260 - - 11 B1.3|11 predicted gene, 46260 ncRNA 28281 D10Jhu43 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 43 unknown 108167938 XR_001780359 Gm46301 - - 11 E2|11 predicted gene, 46301 ncRNA 100861908 Mm.464911 NM_001270722 ENSMUSG00000095724 Gm21319 - - 12 D2|12 predicted gene, 21319 protein-coding 102636158 LOC102636158 - - 18 E3 ATP synthase subunit d, mitochondrial pseudogene pseudo 73341 Mm.261443 NM_152801 ENSMUSG00000031133 Arhgef6 1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX - X|X A6 Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 protein-coding 100036483 Lnopy2 - - 12 28.94 cM lens opacity 2 unknown 108168315 Gm46573 - - 17 B2|17 predicted gene, 46573 pseudo 67511 Mm.45233 NM_026211 ENSMUSG00000058569 Tmed9 2400003B06Rik - 13|13 B1 transmembrane p24 trafficking protein 9 protein-coding 110993 Ppi-rs - - - peptidylprolyl isomerase, related sequence pseudo 102637948 XR_380646 Gm34633 - - 10 C1|10 predicted gene, 34633 ncRNA 102465697 NR_106069 ENSMUSG00000105723 Mir7210 mir-7210|mmu-mir-7210 - 14|14 A3 microRNA 7210 ncRNA 211556 Mm.403486 NM_145964 ENSMUSG00000074238 Ap1ar AA407621|C78909|Gadkin - 3|3 G2 adaptor-related protein complex 1 associated regulatory protein protein-coding 105245761 Gm41160 - - 14|14 predicted gene, 41160 ncRNA 105243271 Gm39237 - - 8|8 predicted gene, 39237 ncRNA 74579 4833419E13Rik - - 11|11 RIKEN cDNA 4833419E13 gene protein-coding 216028 Mm.431318 NM_178678 ENSMUSG00000042846 Lrrtm3 9630044H04Rik - 10|10 B4 leucine rich repeat transmembrane neuronal 3 protein-coding 105243939 XR_865472 LOC105243939 - - 1 C2 uncharacterized LOC105243939 ncRNA 791342 Gm10097 - - - predicted gene 10097 protein-coding 105245847 XR_874912 Gm41236 - - 14 E2.3|14 predicted gene, 41236 ncRNA 72317 Mm.440147 NR_040373 ENSMUSG00000086438 Asb17os 2510003D18Rik - 3|3 H3 ankyrin repeat and SOCS box-containing 17, opposite strand ncRNA 100416278 Gm18017 - - 9|9 D predicted gene, 18017 pseudo 100041599 XM_017318897 LOC100041599 - - - protein FAM205A-like protein-coding 434685 Igkv8-23-1 - - 6|6 C1 immunoglobulin kappa variable 8-23-1 other 387343 Mm.377905 NM_207017 ENSMUSG00000062528 Tas2r109 T2R09|Tas2r9|mGR09|mt2r62 - 6 G1|6 64.03 cM taste receptor, type 2, member 109 protein-coding 16206 Mm.245210 NM_008377 ENSMUSG00000030029 Lrig1 D6Bwg0781e|Img|LIG-1 - 6 D2|6 43.15 cM leucine-rich repeats and immunoglobulin-like domains 1 protein-coding 237886 Mm.270253 NM_172796 ENSMUSG00000069793 Slfn9 9830137M10Rik - 11|11 C schlafen 9 protein-coding 402744 C130076G22Rik - - 19|19 RIKEN cDNA C130076G22 gene protein-coding 61544 D9Mit133 - - 9 45.8 cM DNA segment, Chr 9, Massachusetts Institute of Technology 133 unknown 625026 NM_001039226 Gm10048 EG625026 - 5 B3|5 predicted gene 10048 unknown 110120372 LOC110120372 - - - VISTA enhancer mm971 biological-region 385312 Mm.484393 NM_199064 ENSMUSG00000068219 Ssxb10 - - X|X A1.1 synovial sarcoma, X member B10 protein-coding 102637371 Gm15422 - - 14 E5|14 66.18 cM predicted gene 15422 pseudo 623998 Gm6465 EG623998 - 5|5 A1 predicted gene 6465 pseudo 62986 D18Mit206 - - 18 37.43 cM DNA Segment, Chr 18, Massachusetts Institute of Technology 206 unknown 100036068 Vtbt13 - - 12 28.94 cM vertebral trabecular bone trait 13 unknown 382947 Gm5209 EG382947 - 14|14 E4 predicted gene 5209 pseudo 100862315 Gm21638 - - Y|Y predicted gene, 21638 protein-coding 108168178 XR_001781396 Gm46468 - - 14 A1|14 predicted gene, 46468 ncRNA 669675 XR_382804 Gm9465 - - 13 D1|13 predicted gene 9465 ncRNA 102639867 Gm36078 - - 5|5 predicted gene, 36078 ncRNA 12349 Mm.1186 NM_009801 ENSMUSG00000027562 Car2 AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5 - 3 A1|3 3.23 cM carbonic anhydrase 2 protein-coding 16896 lla - - - lymphoma latency acceleration unknown 14126 Mm.329735 NM_013516 ENSMUSG00000024680 Ms4a2 FcRB|Fce1b|Fcer1b|Fcrbeta|Ms4a1|fcERI - 19 A|19 8.46 cM membrane-spanning 4-domains, subfamily A, member 2 protein-coding 105245087 XR_871396 Gm40586 - - 9 F4|9 predicted gene, 40586 ncRNA 100036204 Pbrgcsf1 G-CSF - 2 60.69 cM peripheral blood stem cell response to granulocyte colony stimulating factor 1 unknown 73458 Mm.482922 NM_028545 ENSMUSG00000037263 Aldh3b3 1700055N04Rik - 19|19 A aldehyde dehydrogenase 3 family, member B3 protein-coding 102633899 XR_870710 Gm31614 - - 9 A5.3|9 predicted gene, 31614 ncRNA 78878 Mm.259724 NR_028380 ENSMUSG00000086370 Ftx B230206F22Rik|BB219131|NCRNA00182|Thcytx - X D|X 46.21 cM Ftx transcript, Xist regulator (non-protein coding) ncRNA 110225 Igh-Dex - - - immunoglobulin heavy chain Dex other 100035868 Modc2 Moo2 - X 42.82 cM modifier of Odc2 unknown 68729 Mm.17436 NM_197987 ENSMUSG00000018548 Trim37 1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898 - 11|11 C tripartite motif-containing 37 protein-coding 70207 Mm.343857 NM_027346 ENSMUSG00000001983 Taco1 2310066I18Rik|Ccdc44 - 11|11 E1 translational activator of mitochondrially encoded cytochrome c oxidase I protein-coding 19153 Mm.10119 NM_019412 ENSMUSG00000053198 Prx L-Periaxin - 7 A3|7 15.91 cM periaxin protein-coding 105244533 XR_867572 Gm40126 - - 3 G1|3 predicted gene, 40126 ncRNA 104231 Ly76 TER-119|Ter119 - - lymphocyte antigen 76 protein-coding 102635126 XR_881371 Gm32545 - - 4 C3|4 predicted gene, 32545 ncRNA 100044068 XM_006536903 LOC100044068 Ifi202b - 1|1 interferon-activable protein 202-like protein-coding 170834 Mm.24754 NM_133353 ENSMUSG00000041857 Oosp1 AA536827 - 19|19 A oocyte secreted protein 1 protein-coding 105245075 XR_873021 Gm40577 - - 12 F1|12 predicted gene, 40577 ncRNA 108167826 Gm16269 - - 10 C1|10 43.38 cM 60S ribosomal protein L7a pseudogene pseudo 110432 Evi15 - - - ecotropic viral integration site 15 protein-coding 624037 Gm6467 EG624037|Gm1822 - 16|16 B1 proteasome (prosome, macropain) subunit, beta type 3 pseudogene pseudo 102640342 XR_378568 Gm36431 Gm45320 - 7 F3|7 predicted gene, 36431 ncRNA 621967 Gm6272 EG621967 - 5|5 G2 predicted pseudogene 6272 protein-coding 546612 Trav4d-2 Gm13958 - 14|14 C2 T cell receptor alpha variable 4D-2 pseudo 102633501 Gm29382 - - Y|Y predicted gene 29382 pseudo 102631795 XR_380921 Gm30041 - - 10 D3|10 predicted gene, 30041 ncRNA 102633205 XR_386559 Gm31092 - - 19 A|19 predicted gene, 31092 ncRNA 102632888 XR_001778981 Gm30847 - - 1 C3|1 predicted gene, 30847 ncRNA 102637795 Mm.438286 Gm34517 - - 19|19 predicted gene, 34517 ncRNA 11904 at - - - atrichosis unknown 243385 Mm.138080 NM_183183 ENSMUSG00000045441 Gprin3 C030038J10Rik|C730021L23 - 6|6 B3 GPRIN family member 3 protein-coding 100043780 Rps3a2 Gm10119 - 14|14 E1 ribosomal protein S3A2 pseudo 170759 Mm.186066 NM_133224 ENSMUSG00000031862 Atp13a1 Atp13a|Cgi152|catp - 8|8 B3.3 ATPase type 13A1 protein-coding 210146 Mm.41108 NM_153134 ENSMUSG00000041037 Irgq AF322649|FKSG27|Irgq1 - 7|7 A3 immunity-related GTPase family, Q protein-coding 18613 Mm.343951 NM_008816 ENSMUSG00000020717 Pecam1 C85791|Cd31|PECAM-1|Pecam - 11|11 E1 platelet/endothelial cell adhesion molecule 1 protein-coding 383891 Gm5278 EG383891 - 3|3 F2.1 predicted pseudogene 5278 pseudo 54188 Mm.196884 NM_178576 ENSMUSG00000029625 Cpsf4 30kDa|C79664 - 5|5 G2 cleavage and polyadenylation specific factor 4 protein-coding 100035513 Chldq3 - - - cholesterol and HDL QTL 3 unknown 100035930 Sdtq11 L19 - - skull development traits QTL 11 unknown 259118 Mm.377858 NM_147114 ENSMUSG00000066269 Olfr575 MOR8-1 - 7|7 E3 olfactory receptor 575 protein-coding 269701 Mm.444012 NM_177760 ENSMUSG00000029442 Wdr66 4930415N18Rik|4933428F06Rik|5031404N07|CFAP251 - 5|5 F WD repeat domain 66 protein-coding 111774 Iapls2-6 - - - intracisternal A particle, lymphocyte specific 2-6 other 791376 Mm.380660 Gm9964 - - - predicted gene 9964 unknown 100416063 Gm17898 - - 2|2 C3 nucleophosmin 1 pseudogene pseudo 61159 D12Mit56 - - 12 5.64 cM DNA segment, Chr 12, Massachusetts Institute of Technology 56 unknown 102631746 XR_389105 Gm30009 - - 11 E2|11 predicted gene, 30009 ncRNA 667237 Gm8531 EG667237 - 1|1 C1.2 predicted gene 8531 pseudo 102637314 XR_379636 Gm34158 - - 9 D|9 predicted gene, 34158 ncRNA 675957 Mlnr-ps Gm700|Gm9657 - 14|14 D2 motilin receptor, pseudogene pseudo 74846 Mm.443946 NR_040505 ENSMUSG00000086638 4930405A21Rik - - 2|2 H1 RIKEN cDNA 4930405A21 gene ncRNA 100316833 NR_035466 ENSMUSG00000088544 Mir1945 mir-1945|mmu-mir-1945 - 16 A1|16 6.4 cM microRNA 1945 ncRNA 61707 D5Mit320 - - 5 65.25 cM DNA segment, Chr 5, Massachusetts Institute of Technology 320 unknown 61280 D2Mit256 - - 2 61.76 cM DNA segment, Chr 2, Massachusetts Institute of Technology 256 unknown 102632165 XR_373973 Gm13388 - - 2 A1|2 3.66 cM predicted gene 13388 ncRNA 109280086 LOC109280086 Mm780 - - VISTA enhancer mm780 biological-region 27716 D1Dau24 - - - DNA segment, Chr 1, DA Underhill 24 unknown 105243958 XR_865545 Gm39664 - - 1 C3|1 predicted gene, 39664 ncRNA 110382 Mm.87072 NM_133882 ENSMUSG00000029656 C8b 4930439B20Rik|AI595927 - 4 C6|4 48.61 cM complement component 8, beta polypeptide protein-coding 105245195 XR_871797 Gm40681 - - 10 B5.1|10 predicted gene, 40681 ncRNA 239739 Mm.258059 NM_177356 ENSMUSG00000041247 Lamp3 1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403 - 16|16 A3 lysosomal-associated membrane protein 3 protein-coding 111628 Tcra-V16 - - - T cell receptor alpha, variable 16 other 102467293 n-TQctg7 n-Tq7 - 13 A2|13 nuclear encoded tRNA glutamine 7 (anticodon CTG) tRNA 110058 Mm.156558 NM_138649 ENSMUSG00000058420 Syt17 Bk|sytXVII - 7 F1|7 63.44 cM synaptotagmin XVII protein-coding 99502 AA516946 - - - expressed sequence AA516946 unknown 72381 Mm.288885 NR_003492 ENSMUSG00000081766 2210409E12Rik AU021711|C76890 - 11|11 C transcription elongation factor B (SIII), polypeptide 2 pseudogene pseudo 111229 Hmgb1-rs8 Hmg1-rs8 - - high mobility group box 1, related sequence 8 pseudo 111585 Pmv20 Pmv-20 - - polytropic murine leukemia virus 20 other 278174 Mm.379565 NM_198898 ENSMUSG00000079701 Ssxb3 - - X|X A1.1 synovial sarcoma, X member B3 protein-coding 110220 Igh-Aa1 - - - immunoglobulin heavy chain Aa1 other 100009609 Mm.389926 NM_001105180 ENSMUSG00000066372 Vmn2r65 V2ro - 7 D3|7 vomeronasal 2, receptor 65 protein-coding 19601 Rb(6.7)13Rma Rb13Rma - - Robertsonian translocation, Chr 6 and 7, Universita di Roma 13 other 100534360 Gm21041 - - 9|9 A5.1 basic leucine zipper and W2 domains 1 pseudogene pseudo 667170 Gm8492 EG667170 - 17 A1|17 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 668244 Gm9062 EG668244 - X|X C3 mitochondrial ribosomal protein L10 pseudogene pseudo 70365 Mm.87073 NR_001582 ENSMUSG00000091358 Speer5-ps1 1700007C10Rik|SPEER-5|Speer5-ps - 10|10 B2 spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1 pseudo 100038410 Mm.353669 NR_033455 Gm10536 - - 18 D3|18 predicted gene 10536 ncRNA 218165 Mm.364096 NM_172143 ENSMUSG00000047094 Ofcc1 opo - 13|13 A3.3 orofacial cleft 1 candidate 1 protein-coding 61321 D3Mit173 - - 3 28.63 cM DNA segment, Chr 3, Massachusetts Institute of Technology 173 unknown 69369 Mm.391200 NM_027058 ENSMUSG00000024729 1700017D01Rik - - 19|19 A RIKEN cDNA 1700017D01 gene protein-coding 70125 Mm.18168 2210016H18Rik - - 18|18 RIKEN cDNA 2210016H18 gene protein-coding 50935 Mm.88831 NM_016973 ENSMUSG00000026811 St6galnac6 ST6GalNAcVI|Siat7f - 2|2 B ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 protein-coding 229861 Mm.27755 XR_376120 Gm567 - - 3|3 G3 predicted gene 567 protein-coding 320955 9430088B20Rik - - 6|6 RIKEN cDNA 9430088B20 gene protein-coding 327901 Mm.411615 4831410D14 - - 11|11 A4 uncharacterized protein 4831410D14 protein-coding 666993 Gm8410 EG666993 - X|X A7.2 predicted gene 8410 pseudo 102636874 Gm33824 - - 14|14 predicted gene, 33824 ncRNA 105246479 Mm.445172 Gm41764 - - 18|18 predicted gene, 41764 ncRNA 269952 Mm.187733 NM_178752 ENSMUSG00000050973 Gdpgp1 D330012F22Rik - 7|7 D2 GDP-D-glucose phosphorylase 1 protein-coding 240960 Mm.259654 NM_172846 ENSMUSG00000047369 Dnah14 A230079K17Rik|Dnahc14|Gm18554|Gm980 - 1|1 H4-H5 dynein, axonemal, heavy chain 14 protein-coding 100035826 Fmgty13 - - 15 45.02 cM femur geometry 13 unknown 75220 Mm.220922 4930535I16Rik - - 4|4 D2.2 RIKEN cDNA 4930535I16 gene protein-coding 100417281 Gm18499 - - 12|12 D2 crumbs homolog 1 pseudogene pseudo 71339 Mm.404075 5430400D12Rik - - 7|7 RIKEN cDNA 5430400D12 gene unknown 111620 Tcra-V11 - - - T cell receptor alpha, variable 11 other 11949 Mm.12677 NM_020615 ENSMUSG00000025781 Atp5c1 1700094F02Rik|Atp5f1c - 2|2 A1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 protein-coding 28287 D10Jhu55 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 55 unknown 668625 Gm9275 EG668625 - 14|14 E1 sorbitol dehydrogenase pseudogene pseudo 666221 Gm11352 - - 13|13 A3.1 PRELI domain containing 1 pseudogene pseudo 102637525 Gm34311 - - 6|6 predicted gene, 34311 ncRNA 100101919 Mm.383402 NM_001310335 ENSMUSG00000101337 Dnah7c Dnahc7c - 1|1 C1.1 dynein, axonemal, heavy chain 7C protein-coding 100035722 Tcsz1 QTL-CS7.1 - - tooth central size 1 unknown 52688 D16Ertd779e - - 11 46.74 cM DNA segment, Chr 16, ERATO Doi 779, expressed unknown 100529079 Mm.437003 NR_040466 ENSMUSG00000086236 5830418P13Rik - - 9 55.37 cM|9 F1 RIKEN cDNA 5830418P13 gene ncRNA 94175 Mm.358794 NM_053176 ENSMUSG00000022877 Hrg AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp - 16 B1|16 13.79 cM histidine-rich glycoprotein protein-coding 11747 Mm.1620 NM_009673 ENSMUSG00000027712 Anxa5 Anx5|R74653 - 3 B|3 17.46 cM annexin A5 protein-coding 76803 Mm.183391 NM_183119 ENSMUSG00000074832 2410141K09Rik 4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg - 13|13 B3 RIKEN cDNA 2410141K09 gene protein-coding 100035850 W3q3 - - - weight 3 weeks QTL 3 unknown 69232 Mm.335449 NM_175143 ENSMUSG00000006673 Qrich1 2610028H07Rik|b2b2404Clo - 9|9 F2 glutamine-rich 1 protein-coding 21246 T(7;11)64H T64H - - reciprocal translocation, Chr 7 and 11, Harwell 64 other 102642386 XM_011250929 ENSMUSG00000090744 LOC102642386 - - 7 B3 zinc finger protein 431-like protein-coding 673290 Gm9593 - - 14|14 C1 predicted gene 9593 pseudo 100040736 Mm.231287 NR_030721 ENSMUSG00000085399 Foxd2os 9130206I24Rik - 4|4 D1 forkhead box D2, opposite strand ncRNA 60764 D2Mit62 - - 2 59.34 cM DNA segment, Chr 2, Massachusetts Institute of Technology 62 unknown 433904 Mm.274892 NM_026950 ENSMUSG00000029153 Ociad2 1810027I20Rik - 5|5 C3.2 OCIA domain containing 2 protein-coding 320173 A630057J21Rik - - 7|7 RIKEN cDNA A630057J21 gene protein-coding 104073 Up - - - umbrous-patterned unknown 21973 Mm.4237 NM_011623 ENSMUSG00000020914 Top2a Top-2 - 11 D|11 62.91 cM topoisomerase (DNA) II alpha protein-coding 105242709 XR_869226 Gm38852 - - 6 D1|6 predicted gene, 38852 ncRNA 109288 9330115C17Rik - - 15|15 RIKEN cDNA 9330115C17 gene protein-coding 100035019 Hdl36 - - 4 28.7 cM HDL level 36 unknown 100416355 Gm18066 - - 8|8 B3.1 lysyl-tRNA synthetase pseudogene pseudo 14432 Mm.1222 NM_008083 ENSMUSG00000047261 Gap43 B-50|Basp2|GAP-43 - 16 B4|16 28.37 cM growth associated protein 43 protein-coding 77940 Mm.272221 NR_028376 ENSMUSG00000054057 A930004D18Rik AU022051 - 2|2 A3 RIKEN cDNA A930004D18 gene ncRNA 102636507 Gm33553 - - 6|6 predicted gene, 33553 ncRNA 637898 Mm.469900 NM_001105057 ENSMUSG00000090619 Vmn2r60 Casr-rs3|EG637898|Gprc2a-rs3 - 7 B3|7 vomeronasal 2, receptor 60 protein-coding 17288 Mm.2682 NM_008586 ENSMUSG00000024313 Mep1b Mep-1b - 18 A2|18 11.81 cM meprin 1 beta protein-coding 12775 Mm.2932 NM_007719 ENSMUSG00000037944 Ccr7 CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h - 11|11 D chemokine (C-C motif) receptor 7 protein-coding 74004 Mm.334298 NM_028708 Jakmip3 6330417G02Rik|AI593226|mKIAA4091 - 7|7 F4 janus kinase and microtubule interacting protein 3 protein-coding 106728413 LOC106728413 nPE1|nPE2 - - Pomc distal enhancer region biological-region 105246557 XR_877807 Gm41831 - - 19 C1|19 predicted gene, 41831 ncRNA 100416195 LOC100416195 - - X|X A3.3 ribosomal protein SA pseudogene pseudo 62854 D12Mit191 - - 12 24.49 cM DNA segment, Chr 12, Massachusetts Institute of Technology 191 unknown 225631 Mm.234723 NM_194268 ENSMUSG00000045991 Onecut2 C730009D12|OC-2|Oc2 - 18|18 E1 one cut domain, family member 2 protein-coding 11571 Mm.16781 NM_009638 ENSMUSG00000025431 Crisp1 AW324342|Aeg1|CRISP-1|SCP 1 - 17 B2|17 19.47 cM cysteine-rich secretory protein 1 protein-coding 80859 Mm.247272 NM_030612 ENSMUSG00000035356 Nfkbiz AA408868|INAP|Mail - 16|16 C1.1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta protein-coding 108169096 Mm.290530 XM_017321256 Gm46933 - - 5 E2|5 predicted gene, 46933 protein-coding 102638361 LOC102638361 - - - UPF0586 protein C9orf41 homolog protein-coding 117589 Mm.34785 NM_080443 ENSMUSG00000030509 Asb7 AI449039|Asb-7|D030055C23Rik - 7|7 C ankyrin repeat and SOCS box-containing 7 protein-coding 239250 Mm.49728 NM_175499 ENSMUSG00000045871 Slitrk6 4832410J21Rik|Sltk6 - 14|14 E3 SLIT and NTRK-like family, member 6 protein-coding 108168922 XR_001784066 Gm46839 - - 3 G1|3 predicted gene, 46839 ncRNA 78423 9530049O05Rik - - 5|5 RIKEN cDNA 9530049O05 gene protein-coding 105243247 XR_879076 Gm39220 - - 8 C4|8 predicted gene, 39220 ncRNA 69053 Mm.390868 NM_001081400 ENSMUSG00000022507 1810013L24Rik 1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903 - 16|16 A1 RIKEN cDNA 1810013L24 gene protein-coding 27815 391O16F - - - DNA segment, 391O16F (Research Genetics) unknown 60780 D3Mit31 - - 3 72.32 cM DNA segment, Chr 3, Massachusetts Institute of Technology 31 unknown 105246132 XR_876149 Gm41471 - - 16 C2|16 predicted gene, 41471 ncRNA 67339 Mm.121929 NR_126543 ENSMUSG00000097717 1700066J03Rik - - 13|13 B1 RIKEN cDNA 1700066J03 gene ncRNA 14009 Mm.4866 NM_007960 ENSMUSG00000004151 Etv1 ER81|Etsrp81 - 12 A3|12 17.99 cM ets variant 1 protein-coding 54519 Mm.14255 NM_019456 ENSMUSG00000026786 Apbb1ip 9930118P07Rik|Prp48 - 2|2 A3 amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein protein-coding 217449 Mm.132006 NM_178811 ENSMUSG00000020628 Trappc12 CGI-87|D930014A20Rik|Ttc15 - 12|12 A2 trafficking protein particle complex 12 protein-coding 69550 Mm.260325 NM_198095 ENSMUSG00000046718 Bst2 2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG - 8|8 B3.3 bone marrow stromal cell antigen 2 protein-coding 100040483 Gm20843 - - Y|Y predicted gene, 20843 protein-coding 353320 Mm.270483 NM_181683 ENSMUSG00000053695 Defb37 BD-37 - 8|8 A1.3 defensin beta 37 protein-coding 105243715 XR_878219 Gm39531 - - X D|X predicted gene, 39531 ncRNA 732482 Mm.463248 NR_003107 Gm9731 - - 8 A2|8 Fam58a pseudogene pseudo 258087 Mm.377346 NM_001011827 ENSMUSG00000064110 Olfr963 MOR224-13|MOR224-7P - 9|9 A5.1 olfactory receptor 963 protein-coding 73318 Mm.441500 NM_028502 ENSMUSG00000063447 Ube2d2b 1700013N18Rik - 5|5 F ubiquitin-conjugating enzyme E2D 2B protein-coding 71704 Mm.248606 NM_027871 ENSMUSG00000021895 Arhgef3 1200004I24Rik|9830169H03Rik|C76747|Xpln - 14 A3|14 16.09 cM Rho guanine nucleotide exchange factor (GEF) 3 protein-coding 100035697 Msts2 - - - modifier of Salmonella typhimurium susceptibility 2 unknown 667432 Gm8629 EG667432 - 18|18 D3 cofilin 1, non-muscle pseudogene pseudo 23845 Mm.103765 NM_021364 ENSMUSG00000029915 Clec5a Clecsf5|Ly100|MDL-1|Mdl1 - 6|6 B1 C-type lectin domain family 5, member a protein-coding 61745 D4Mit270 - - 4 24.49 cM DNA segment, Chr 4, Massachusetts Institute of Technology 270 unknown 140577 Mm.214766 NM_080471 ENSMUSG00000040183 Ankrd6 - - 4|4 A5 ankyrin repeat domain 6 protein-coding 319435 E230023K05Rik - - 15 A1|X RIKEN cDNA E230023K05 gene protein-coding 19219 Mm.18509 NM_008965 ENSMUSG00000039942 Ptger4 EP4|Ptgerep4 - 15 A1|15 1.99 cM prostaglandin E receptor 4 (subtype EP4) protein-coding 105244741 XR_868404 Gm40297 - - 5 B3|5 predicted gene, 40297 ncRNA 100416209 Gm17968 - - 1|1 H5 ribosomal protein S2 pseudogene pseudo 667937 Gm8885 EG667937 - 1|1 C3 ribosomal protein L15 pseudogene pseudo 100503130 Gm15964 - - 16|16 53.16 cM predicted gene 15964 ncRNA 61815 D2Mit367 - - 2 22.5 cM DNA segment, Chr 2, Massachusetts Institute of Technology 367 unknown 14047 ey2 ey-2 - - eyeless 2 unknown 258437 Mm.347658 NM_146445 ENSMUSG00000054431 Olfr450 MOR257-3 - 6|6 B2.1 olfactory receptor 450 protein-coding 105243483 XR_880220 Gm39392 - - 11 D|11 predicted gene, 39392 ncRNA 319646 Mm.483039 NR_045291 ENSMUSG00000037747 D630013N20Rik - - 10|10 B5.3 RIKEN cDNA D630013N20 gene ncRNA 105246659 Gm41916 - - 1|1 predicted gene, 41916 ncRNA 102634941 XR_001779453 Gm29376 - - 1 E4|1 predicted gene 29376 protein-coding 100038681 Mm.483595 Gm10777 - - - predicted gene 10777 unknown 102632632 XR_377377 Gm30658 - - 6 A3.1|6 predicted gene, 30658 ncRNA 227061 Gm4852 EG227061 - 1|1 C1.1 DnaJ (Hsp40) homolog, subfamily B, member 6 pseudogene pseudo 626367 Rpl31-ps15 EG626367|Gm6670 - 3|3 B ribosomal protein L31, pseudogene 15 pseudo 320311 Mm.389162 NM_178779 ENSMUSG00000047496 Rnf152 A930029B02Rik - 1|1 E2.1 ring finger protein 152 protein-coding 57339 Mm.143761 NM_020604 ENSMUSG00000042686 Jph1 JP-1|Jp1 - 1|1 A3 junctophilin 1 protein-coding 102638994 Gm12616 - - 11 B2|11 37.81 cM predicted gene 12616 pseudo 100124455 Mir714 Mirn714|mmu-mir-714 - - microRNA 714 ncRNA 102637976 XR_380176 Gm34656 - - 10 A3|10 predicted gene, 34656 ncRNA 52504 Mm.70546 NM_134046 ENSMUSG00000020652 Cenpo 2810429O05Rik|8430427C03Rik|D12Ertd482e - 12 A1.1|12 2.02 cM centromere protein O protein-coding 108167389 XR_882556 LOC108167389 - - - uncharacterized LOC108167389 ncRNA 105243171 XR_870358 Gm39163 - - 8 A4|8 predicted gene, 39163 ncRNA 675063 Gm9634 - - 13 C1|13 NSA2 ribosome biogenesis homolog pseudogene pseudo 20111 Mm.301827 NM_009097 ENSMUSG00000003644 Rps6ka1 Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk - 4|4 D2.3 ribosomal protein S6 kinase polypeptide 1 protein-coding 20680 Mm.42162 NM_011446 ENSMUSG00000063060 Sox7 - - 14|14 D1 SRY (sex determining region Y)-box 7 protein-coding 218734 Mm.44068 NM_146051 ENSMUSG00000033111 3830406C13Rik - - 14|14 A1 RIKEN cDNA 3830406C13 gene protein-coding 100182 Mm.387725 NM_001045514 ENSMUSG00000039158 Akna AI597013 - 4|4 B3-C1 AT-hook transcription factor protein-coding 68554 Mm.391820 NM_001177402 ENSMUSG00000062691 Cebpzos 1110001A16Rik - 17|17 E3 CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand protein-coding 692113 Igkv13-56-1 gg33r - 6|6 C1 immunoglobulin kappa chain variable 13-56-1 pseudo 387201 NR_029592 ENSMUSG00000065533 Mir205 Mirn205|mir-205|mmu-mir-205 - 1 H6|1 microRNA 205 ncRNA 100049599 Fmtq18 - - - femur mechanical trait QTL 18 unknown 100042712 Gm3982 - - 10 C1|10 predicted gene 3982 pseudo 105245823 XR_874830 Gm41213 - - 14 D3|14 predicted gene, 41213 ncRNA 99236 Mm.17822 AU044856 - - - expressed sequence AU044856 protein-coding 112392 Eae13 - - 13 34.54 cM experimental allergic encephalomyelitis susceptibility 13 unknown 20833 Mm.219793 NM_182990 ENSMUSG00000027067 Ssrp1 C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160 - 2 D|2 49.45 cM structure specific recognition protein 1 protein-coding 74217 1700010G06Rik - - 15|15 RIKEN cDNA 1700010G06 gene protein-coding 102467000 NR_106140 ENSMUSG00000104747 Mir292b mmu-mir-292b - 7|7 A1 microRNA 292b ncRNA 108309 Mmv12 Mmv-12 - - MCF endogenous virus 12 other 73393 1700056I18Rik - - 2|2 RIKEN cDNA 1700056I18 gene protein-coding 664891 Gm7392 EG664891 - 12|12 B3 predicted gene 7392 pseudo 73847 Mm.272444 NM_028666 ENSMUSG00000027459 Fam110a 1700008J10Rik|5430432M24Rik|AI747080 - 2|2 G3 family with sequence similarity 110, member A protein-coding 228677 Mm.100450 NM_175467 ENSMUSG00000039092 Sptlc3 C130053K05Rik - 2|2 F3 serine palmitoyltransferase, long chain base subunit 3 protein-coding 100126692 Mm.372896 NR_045950 ENSMUSG00000113189 B020018J22Rik - - 12 F1|12 Riken cDNA B020018J22 gene ncRNA 74466 Mm.189707 NM_028955 ENSMUSG00000030877 Mfsd13b 4933427G17Rik - 7|7 F2 major facilitator superfamily domain containing 13B protein-coding 381199 Mm.329663 NM_001001885 ENSMUSG00000061451 Tmem151a AW125688|Gm961|Tmem151 - 19|19 A transmembrane protein 151A protein-coding 100035661 Hdlq44 - - - HDL QTL 44 unknown 14119 Mm.20271 NM_010181 ENSMUSG00000024598 Fbn2 BC063774|Fib-2|mKIAA4226|sne|sy - 18 D3|18 32.15 cM fibrillin 2 protein-coding 102638089 LOC102638089 - - 9 D dynein light chain 1, cytoplasmic-like pseudo 102467424 n-TCgca12 n-Tc12 - 6 B2.3|6 nuclear encoded tRNA cysteine 12 (anticodon GCA) tRNA 102638607 Mm.445539 XR_881799 Gm15927 - - 7 A1|7 2.09 cM predicted gene 15927 ncRNA 102634151 XR_377771 Gm31806 - - 6 C2|6 predicted gene, 31806 ncRNA 100328588 Mm.2565 NM_001171024 ENSMUSG00000074141 Gm21948 Nup62-il4i1 - 7 B3|7 predicted gene, 21948 protein-coding 102631534 Gm29847 - - 6|6 predicted gene, 29847 ncRNA 100039362 Gm2182 - - X|X A3.1 predicted gene 2182 pseudo 74043 Mm.491240 NM_028730 ENSMUSG00000067825 Pex26 4632428M11Rik - 6|6 F1 peroxisomal biogenesis factor 26 protein-coding 432713 Mm.459210 NR_044987 ENSMUSG00000101930 Gm5441 - - 12 F2|12 predicted gene 5441 ncRNA 140570 Mm.267514 NM_138749 ENSMUSG00000036606 Plxnb2 Debt|plexin-B2 - 15 E3|15 44.68 cM plexin B2 protein-coding 19243 Mm.491181 NM_011200 ENSMUSG00000026064 Ptp4a1 AA415290|AU019864|C130021B01|Prl-1 - 1|1 A5-B protein tyrosine phosphatase 4a1 protein-coding 258899 Mm.377741 NM_146897 ENSMUSG00000075110 Olfr1214 MOR233-8 - 2|2 E1 olfactory receptor 1214 protein-coding 101056229 Gm29802 - - 10|10 predicted gene, 29802 protein-coding 105247231 XR_881642 Gm42365 - - 4 E2|4 predicted gene, 42365 ncRNA 19866 NR_024201 ENSMUSG00000089083 Rnu7 - - 6 F2|6 59.17 cM U7 small nuclear RNA snRNA 103816 Mm.265874 AI662461 - - - expressed sequence AI662461 protein-coding 229214 Mm.330975 NM_198192 ENSMUSG00000058400 Qrfpr AQ27|Gpr103|SP9155 - 3|3 B pyroglutamylated RFamide peptide receptor protein-coding 105243777 XR_873092 Gm39562 - - 12 F2|12 predicted gene, 39562 ncRNA 28179 D16Ium31e D16Ium31 - - DNA segment, Chr 16, Indiana University Medical 31, expressed unknown 76832 Mm.482285 NM_029762 ENSMUSG00000050555 Hyls1 3010015K02Rik - 9|9 A4 HYLS1, centriolar and ciliogenesis associated protein-coding 111837 Iapls1-22 - - - intracisternal A particle, lymphocyte specific 1-22 other 21749 Mm.4306 NM_009352 ENSMUSG00000025925 Terf1 Pin2|Trbf1|Trf1 - 1 A3|1 4.88 cM telomeric repeat binding factor 1 protein-coding 100036232 Pbwg10 - - X 4.25 cM postnatal body weight growth 10 unknown 626480 Gm13170 - - 4|4 E1 high mobility group box 2 pseudogene pseudo 100417243 Gm12041 - - 11|11 A3.1 ribosomal protein, large, P0 pseudogene pseudo 109533 Tanidd1 - - 19 48.46 cM TallyHo associated non-insulin dependent diabetes mellitus 1 unknown 102634187 XR_868247 Gm31831 Gm42831 - 5 A1|5 predicted gene, 31831 ncRNA 61838 D2Mit295 - - 2 19.97 cM DNA segment, Chr 2, Massachusetts Institute of Technology 295 unknown 791347 Mm.452208 NR_040449 Gm10007 - - 19 D2|19 predicted gene 10007 ncRNA 623312 Mm.131279 NR_046023 ENSMUSG00000114792 Gm6416 - - 13 D2.3|13 predicted gene 6416 ncRNA 76238 Mm.196574 NM_080289 ENSMUSG00000035637 Grhpr 1110059D05Rik|6430629L09Rik|Glxr - 4|4 B1 glyoxylate reductase/hydroxypyruvate reductase protein-coding 108168155 XM_017316266 ENSMUSG00000091477 LOC108168155 - - 14 C1 uncharacterized LOC108168155 protein-coding 105243456 XR_870921 Gm39372 - - 9 D|9 predicted gene, 39372 ncRNA 321007 Mm.5548 NM_177311 ENSMUSG00000015659 Serac1 4930511N22Rik|D17Ertd141e - 17 A1|17 3.67 cM serine active site containing 1 protein-coding 94067 Mm.44174 NM_053164 ENSMUSG00000025208 Mrpl43 4930442D21Rik|bMRP36a - 19|19 C3 mitochondrial ribosomal protein L43 protein-coding 320914 Mm.440568 A630044M17Rik - - 16|16 RIKEN cDNA A630044M17 gene protein-coding 102633481 XR_390837 Gm31295 - - 4 D3|4 predicted gene, 31295 ncRNA 51883 D2Ertd259e - - - DNA segment, Chr 2, ERATO Doi 259, expressed unknown 69325 Mm.440453 NM_029306 ENSMUSG00000031927 1700012B09Rik 1700007P19Rik - 9|9 A2 RIKEN cDNA 1700012B09 gene protein-coding 100042036 Gm11728 - - 11|11 E2 predicted gene 11728 protein-coding 665285 Gm7570 EG665285|Hspd1-15p - 9|9 A1 heat shock protein 1 (chaperonin) pseudogene 15 pseudo 66703 4921504P13Rik - - 5|5 RIKEN cDNA 4921504P13 gene protein-coding 102640987 XR_376084 Gm36917 - - 3 G3|3 predicted gene, 36917 ncRNA 108169177 XR_001785406 Gm46980 - - 6 G2|6 predicted gene, 46980 ncRNA 100048658 Mm.158166 NM_001191044 ENSMUSG00000070291 Ddx43 - - 9|9 E1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 protein-coding 16097 Igk-V20 - - 6 C1|6 immunoglobulin kappa chain variable 20 (V20 family) other 100417856 Gm18866 - - 3|3 B predicted gene, 18866 pseudo 68944 Mm.330045 NM_026881 ENSMUSG00000052428 Tmco1 1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39 - 1|1 H2.3 transmembrane and coiled-coil domains 1 protein-coding 102465700 NR_106073 ENSMUSG00000105142 Mir7214 mmu-mir-7214 - 17|17 A3.3 microRNA 7214 ncRNA 105246783 XR_878749 Gm42021 - - 5 F|5 predicted gene, 42021 ncRNA 57265 Mm.36416 NM_020510 ENSMUSG00000050288 Fzd2 AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a - 11|11 E1 frizzled class receptor 2 protein-coding 107746 Mm.298274 NM_054050 ENSMUSG00000039844 Rapgef1 4932418O06Rik|C3G|Grf2 - 2 B|2 20.32 cM Rap guanine nucleotide exchange factor (GEF) 1 protein-coding 269788 Mm.37943 NM_177763 ENSMUSG00000042873 Lhfpl4 1190004M23Rik|AI604880|B230384L07|mKIAA4027 - 6|6 E3 lipoma HMGIC fusion partner-like protein 4 protein-coding 320640 Mm.253775 NM_178786 ENSMUSG00000055960 Skint4 9530098N22Rik - 4|4 D1 selection and upkeep of intraepithelial T cells 4 protein-coding 332578 Mm.246797 NM_178036 ENSMUSG00000047356 Lcn10 9230112J07Rik - 2|2 A3 lipocalin 10 protein-coding 70018 Mm.326349 2010309G21Rik AW494620 - - RIKEN cDNA 2010309G21 gene protein-coding 105243163 XR_870315 ENSMUSG00000109869 Gm39158 Gm45270 - 8 A4|8 predicted gene, 39158 ncRNA 78803 Mm.26393 NM_175281 ENSMUSG00000048230 Fbxo43 4930533G20Rik|Emi2 - 15|15 B3.1 F-box protein 43 protein-coding 232946 Mm.64557 NM_177692 ENSMUSG00000057667 Bloc1s3 BC043666|Blos3|E230011O18|rp - 7 A3|7 9.92 cM biogenesis of lysosomal organelles complex-1, subunit 3 protein-coding 666864 Gm8334 EG666864 - X|X F2 predicted gene 8334 pseudo 105245639 XR_873969 Gm41067 - - 13 D2.2|13 predicted gene, 41067 ncRNA 320215 A130048E20Rik - - 10|10 RIKEN cDNA A130048E20 gene protein-coding 102633369 Gm31211 - - 3 H1|3 predicted gene, 31211 pseudo 60810 D4Mit40 - - 4 61.56 cM DNA segment, Chr 4, Massachusetts Institute of Technology 40 unknown 100416686 Gm18193 - - 7|7 A1 zinc finger protein 623 pseudogene pseudo 22074 Mm.383263 NM_011646 ENSMUSG00000054106 Try4 0910001B19Rik|Td - 6|6 B1 trypsin 4 protein-coding 17263 Mm.289645 NM_144513 ENSMUSG00000021268 Meg3 2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394 - 12 F1|12 60.25 cM maternally expressed 3 ncRNA 52175 DXErtd242e - - X 76.9 cM DNA segment, Chr X, ERATO Doi 242, expressed unknown 98985 Mm.21583 NM_133840 ENSMUSG00000027079 Clp1 AI462438|Heab - 2|2 D CLP1, cleavage and polyadenylation factor I subunit protein-coding 675325 Mm.75890 NR_033517 ENSMUSG00000038311 2410017I17Rik - - 17|17 B1 RIKEN cDNA 2410017I17 gene ncRNA 17608 Ms26 MMS26 - - minisatellites detected by probe MMS26 other 102633494 Gm31306 - - 3|3 predicted gene, 31306 pseudo 67111 Mm.28890 NM_025972 ENSMUSG00000029413 Naaa 2210023K21Rik|3830414F09Rik|Asahl - 5|5 E2 N-acylethanolamine acid amidase protein-coding 108167366 XR_001779850 LOC108167366 - - 1 C1.1 uncharacterized LOC108167366 ncRNA 14924 Mm.217216 NM_010367 ENSMUSG00000045095 Magi1 AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129 - 6|6 D1 membrane associated guanylate kinase, WW and PDZ domain containing 1 protein-coding 68235 Mm.233860 NM_026629 ENSMUSG00000038065 Mturn 2410066E13Rik|AI448550|B230212L03Rik - 6|6 B3 maturin, neural progenitor differentiation regulator homolog (Xenopus) protein-coding 100042812 NM_001111300 Rps26-ps1 Gm10070 - 8|8 D3 ribosomal protein S26, pseudogene 1 pseudo 100417292 Gm18509 - - 10|10 B5.1 crumbs homolog 1 pseudogene pseudo 57254 Mm.377133 NM_020503 ENSMUSG00000045267 Tas2r119 T2r19|Tas2r19|mGR19|mt2r19 - 15|15 B3.1 taste receptor, type 2, member 119 protein-coding 52753 D12Wsu1e - - - DNA segment, Chr 12, Wayne State University-1, expressed unknown 74561 Mm.290028 NM_029002 ENSMUSG00000063672 Nkx6-3 9130417I07Rik|Nkx6.3 - 8|8 A2 NK6 homeobox 3 protein-coding 434585 Gm5628 - - 13 A2|13 G patch domain and ankyrin repeats 1 pseudogene pseudo 235135 Mm.390134 NM_144936 ENSMUSG00000041737 Tmem45b BC018222 - 9|9 A4 transmembrane protein 45b protein-coding 105244784 XR_868562 Gm40334 - - 5 G1.3|5 predicted gene, 40334 ncRNA 85137 DXMit131 - - X 61.35 cM DNA segment, Chr X, Massachusetts Institute of Technology 131 unknown 77126 9930101C24Rik - - - RIKEN cDNA 9930101C24 gene protein-coding 105245147 XR_871631 Gm40640 - - 10 B2|10 predicted gene, 40640 ncRNA 54357 Mm.28217 NM_019427 ENSMUSG00000028434 Epb41l4b 6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2 - 4 B3|4 31.66 cM erythrocyte membrane protein band 4.1 like 4b protein-coding 100038417 Mm.387557 NM_001168423 ENSMUSG00000073551 Spink13 Gm10534|Spink5l3 - 18 E1|18 serine peptidase inhibitor, Kazal type 13 protein-coding 102640163 Mm.421310 Gm29480 - - 1|1 predicted gene 29480 ncRNA 672217 Gm9555 - - 5|5 B1 within bgcn homolog pseudogene pseudo 666850 Gm15493 EG666850 - 9|9 E3.3 predicted gene 15493 pseudo 12539 Mm.32331 NM_016742 ENSMUSG00000019471 Cdc37 p50|p50Cdc37 - 9|9 A3 cell division cycle 37 protein-coding 21299 T(X;17)15Rl T15Rl - - reciprocal translocation, Chr X and 17, Russell 15 other 359985 DXMgc122 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 122 unknown 60702 D1Mit67 - - 1 4.12 cM DNA segment, Chr 1, Massachusetts Institute of Technology 67 unknown 114310 Lprm3 - - 14 44.17 cM lymphoproliferation modifier 3 unknown 50798 Mm.256718 NM_015828 ENSMUSG00000028479 Gne 2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1 - 4|4 B1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 18768 Mm.262135 NM_008863 ENSMUSG00000019876 Pkib Pkibeta|Prkacn2 - 10 B4|10 29.22 cM protein kinase inhibitor beta, cAMP dependent, testis specific protein-coding 667209 Gm8517 EG667209 - 14|14 A2 ribosomal protein L4 pseudogene pseudo 625558 Mm.387192 Gm6600 287g15T7|C86350|EG625558|Zfp-like - 6 F3|6 63.44 cM predicted gene 6600 protein-coding 93887 Mm.197441 NM_053141 ENSMUSG00000047910 Pcdhb16 Pcdhb8|PcdhbP - 18|18 B3 protocadherin beta 16 protein-coding 108167854 LOC108167854 - - 11 A1 60S ribosomal protein L36 pseudogene pseudo 665206 Gm7540 EG665206 - 10|10 B5.1 predicted gene 7540 pseudo 100124627 NR_037258 ENSMUSG00000096587 Mir467a-6 Mirn467a-6|mmu-mir-467a-6 - 2 A1|2 microRNA 467a-6 ncRNA 100042524 Gm13303 - - 4 A5|4 predicted gene 13303 pseudo 110127 Rn18s-rs1 - - - 18s RNA, related sequence 1 rRNA 620401 Mm.484999 NM_001167148 ENSMUSG00000096152 Gm16442 EG667071|Vmn1r92 - 7|7 A3 predicted gene 16442 protein-coding 66602 Mm.379181 NR_015473 ENSMUSG00000085438 1700020I14Rik 1190006L01Rik|4933437I03Rik|AI451541|AI585852|AW538376|AW558897|Cyrano - 2|2 E5 RIKEN cDNA 1700020I14 gene ncRNA 111414 Emv60 Emv-60 - - endogenous ecotropic MuLV 60 other 102635241 XR_381229 Gm32631 - - 12 A1.1|12 predicted gene, 32631 ncRNA 96955 C77144 C77450 - - expressed sequence C77144 protein-coding 665072 Gm7477 EG665072 - 17|17 A3.1 ribosomal protein L3 pseudogene pseudo 18646 Mm.240313 NM_011073 ENSMUSG00000037202 Prf1 Pfn|Pfp|Prf-1 - 10 B4|10 32.18 cM perforin 1 (pore forming protein) protein-coding 75141 Mm.179267 NM_029182 ENSMUSG00000034472 Rasd2 4930526B11Rik|AU045414|Rhes|TEM-2|TEM2 - 8|8 C1 RASD family, member 2 protein-coding 108167434 XM_017312445 Gm45988 - - 7 C|7 predicted gene, 45988 protein-coding 114685 Dbsty4 - - 15 41.96 cM diabesity 4 unknown 232717 Mm.56997 NM_175020 ENSMUSG00000051936 Prss58 1700020H15|Tryx3 - 6|6 B1 protease, serine 58 protein-coding 12006 Mm.71710 NM_015732 ENSMUSG00000000142 Axin2 Axi1|Axil|Conductin - 11 E1|11 71.83 cM axin 2 protein-coding 53625 Mm.395495 NM_016888 ENSMUSG00000051650 B3gnt2 AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt - 11 A3.2|11 14.22 cM UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 62285 D19Mit53 - - 19 38.46 cM DNA segment, Chr 19, Massachusetts Institute of Technology 53 unknown 102638582 XR_377212 Gm35112 - - 5 G3|5 predicted gene, 35112 ncRNA 108168008 XR_001780629 Gm46357 - - 12 C3|12 predicted gene, 46357 ncRNA 53299 5Sp6 - - - DNA segment, 5Sp6 (Research Genetics) unknown 258902 Mm.223312 NM_146900 ENSMUSG00000101480 Olfr1220 MOR2335 - 2|2 E1 olfactory receptor 1220 protein-coding 100417939 Gm18911 - - 15|15 E1 predicted gene, 18911 pseudo 74349 Mm.30254 NM_199009 ENSMUSG00000044465 Fam160a2 4632419K20Rik|6530415H11Rik|FHIP - 7|7 E3 family with sequence similarity 160, member A2 protein-coding 20818 Mm.273053 NM_009275 ENSMUSG00000032553 Srprb AA409543 - 9|9 F1 signal recognition particle receptor, B subunit protein-coding 102640374 Mm.366871 XR_377280 Gm36447 Gm43299 - 5 G3|5 predicted gene, 36447 ncRNA 102640777 XR_388623 Gm36763 - - 11 B1.3|11 predicted gene, 36763 ncRNA 100039271 Gm20800 - - Y|Y predicted gene, 20800 protein-coding 636177 Mm.491809 NM_001039696 ENSMUSG00000079630 Rhox4f Rhox4.6|Rhox4e|Rhox4h - X|X A3.3 reproductive homeobox 4F protein-coding 19730 Mm.5236 NM_009058 ENSMUSG00000026821 Ralgds Gnds|Rgds|mKIAA1308 - 2|2 A3 ral guanine nucleotide dissociation stimulator protein-coding 218902 Mm.107791 NR_131113 ENSMUSG00000115751 4930503F20Rik 4930453C15 - 14|14 B RIKEN cDNA 4930503F20 gene ncRNA 108168203 XM_017316344 Gm46487 - - 14 E5|14 predicted gene, 46487 protein-coding 104096 Pol16 Pol-16 - - viral polymerase 16 protein-coding 105246070 XR_875901 Gm41420 - - 16 A1|16 predicted gene, 41420 ncRNA 100379609 Mm.143872 Gm12606 - - - predicted gene 12606 ncRNA 26446 Mm.21874 NM_011971 ENSMUSG00000069744 Psmb3 AL033320|C10-II - 11 D|11 61.07 cM proteasome (prosome, macropain) subunit, beta type 3 protein-coding 665520 Gm12382 - - 4|4 A5 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 360082 D17Jcs17 - - - DNA segment, Chr 17, John C. Schimenti 17 unknown 20102 Mm.66 NM_009094 ENSMUSG00000031320 Rps4x Rps4|Rps4-1 - X D|X 45.2 cM ribosomal protein S4, X-linked protein-coding 111813 Iapls1-19 - - - intracisternal A particle, lymphocyte specific 1-19 other 112343 Cara3 - - - carcass ash in high growth mice 3 unknown 100041504 XM_001473258 ENSMUSG00000094121 LOC100041504 - - - C-C motif chemokine 21c protein-coding 668825 Olfr268-ps1 GA_x6K02T2N82Q-12713-13766|Gm13931|MOR245-17P - 2|2 E3 olfactory receptor 268, pseudogene 1 pseudo 73592 Mm.416874 NR_108033 ENSMUSG00000112821 1700104L18Rik - - 12|12 C1 RIKEN cDNA 1700104L18 gene ncRNA 22446 Mm.336117 NM_011727 ENSMUSG00000058147 Xlr3c Xlr3b - X|X A7.3 X-linked lymphocyte-regulated 3C protein-coding 116823 Disso1 Disso-1 - 12 29.39 cM dissociation of activity 1 unknown 100417736 Gm18794 - - X|X C1 developmental pluripotency associated 4 pseudogene pseudo 58186 Mm.103812 NM_021385 ENSMUSG00000030254 Rad18 2810024C04Rik|Rad18sc - 6|6 E3 RAD18 E3 ubiquitin protein ligase protein-coding 100628590 NR_039580 ENSMUSG00000092761 Mir5120 mmu-mir-5120|mu-mir-5120 - 4 B1|4 23.56 cM microRNA 5120 ncRNA 100861753 Mm.165042 NM_001302966 ENSMUSG00000095609 Gm21188 - - 13 D2.3|13 predicted gene, 21188 protein-coding 236915 Mm.44841 NM_001033329 ENSMUSG00000025656 Arhgef9 9630036L12Rik - X|X C3 CDC42 guanine nucleotide exchange factor (GEF) 9 protein-coding 105243298 Gm39259 - - 8|8 predicted gene, 39259 ncRNA 112063 Nobq2 Nob2 - 19 40.53 cM New Zealand obese QTL 2 unknown 18510 Mm.2533 NM_011040 ENSMUSG00000026976 Pax8 Pax-8 - 2 A3|2 16.43 cM paired box 8 protein-coding 60595 Mm.81144 NM_021895 ENSMUSG00000054808 Actn4 C77391 - 7|7 B1 actinin alpha 4 protein-coding 20711 Spi15 - - - serine protease inhibitor 15 protein-coding 56050 Mm.17991 NM_018887 ENSMUSG00000023963 Cyp39a1 mCYP39A1 - 17|17 B3 cytochrome P450, family 39, subfamily a, polypeptide 1 protein-coding 19463 Rb(10.14)1Ad Rb1Ad - - Robertsonian translocation, Chr 10 and 15, Adler 1 other 50762 Mm.27445 NM_015797 ENSMUSG00000055401 Fbxo6 AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b - 4 E2|4 78.67 cM F-box protein 6 protein-coding 56213 Mm.30156 NM_019564 ENSMUSG00000006205 Htra1 AI429470|HTRA|L56|Prss11|RSPP11 - 7|7 F3 HtrA serine peptidase 1 protein-coding 102634044 XR_384166 Gm31725 - - 15 D3|15 predicted gene, 31725 ncRNA 545611 Mm.425173 NM_001085530 ENSMUSG00000094066 Fam205a2 Fam205a|Gm13298 - 4|4 A5 family with sequence similarity 205, member A2 protein-coding 435657 Gm5706 EG435657 - 1|1 H5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100756 Mm.240421 NM_001033202 ENSMUSG00000029592 Usp30 6330590F17Rik|AI851327|D5Ertd483e - 5 F|5 55.96 cM ubiquitin specific peptidase 30 protein-coding 100312535 Vmn1r-ps104 Gm11302 - 13|13 A3.1 vomeronasal 1 receptor, pseudogene 104 pseudo 73004 2900078I11Rik - - 10|10 RIKEN cDNA 2900078I11 gene protein-coding 207145 Bbaa21 Bb21 - 14 31.52 cM B.burgdorferi-associated arthritis 21 unknown 85307 Kars-ps1 EG666868|Gm8336 - X|X F2 lysyl-tRNA synthetase, pseudogene 1 pseudo 52365 D7Ertd558e - - 7 76.29 cM DNA segment, Chr 7, ERATO Doi 558, expressed unknown 207135 Bbaa13 Bb13 - - B.burgdorferi-associated arthritis 13 unknown 73257 Mm.250442 NR_045909 ENSMUSG00000087393 1700023C21Rik - - 11|11 E1 RIKEN cDNA 1700023C21 gene ncRNA 105247208 Gm42347 - - 4|4 predicted gene, 42347 ncRNA 102632481 XR_391221 Gm30543 - - 7 A3|7 predicted gene, 30543 ncRNA 61913 D4Mit295 - - 4 31.87 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 295 unknown 108167576 XM_017313054 Gm46066 - - 8 E2|8 predicted gene, 46066 protein-coding 665533 Rpl31-ps10 Gm13004 - 4|4 D3 ribosomal protein L31, pseudogene 10 pseudo 60939 DXMit32 - - X 74.29 cM DNA segment, Chr X, Massachusetts Institute of Technology 32 unknown 668347 Gm9118 EG668347 - 10|10 B4 nucleophosmin 1 pseudogene pseudo 114308 Lprm2 - - 3 63.44 cM lymphoproliferation modifier 2 unknown 102634940 Mm.417647 XR_873289 Gm32401 - - 13 A4|13 predicted gene, 32401 ncRNA 71059 Mm.273871 NM_027658 ENSMUSG00000043372 Hexim2 4933402L21Rik - 11|11 E1 hexamethylene bis-acetamide inducible 2 protein-coding 100042963 Mm.396976 Gm4132 - - 12 F2|12 predicted gene 4132 unknown 20541 Mm.265834 NM_011406 ENSMUSG00000054640 Slc8a1 AI852629|AV344025|D930008O12Rik|Ncx1 - 17 E3|17 51.29 cM solute carrier family 8 (sodium/calcium exchanger), member 1 protein-coding 108314 Tsp1 MTS - - tumor suppressor region 1 other 73367 1700052M09Rik - - 14|14 RIKEN cDNA 1700052M09 gene protein-coding 102640975 XR_386066 Gm36910 - - 18 A1|18 predicted gene, 36910 ncRNA 271505 Gm5064 EG271505|EG666003 - 18|18 A2 cold shock domain containing E1, RNA binding pseudogene pseudo 320358 C430003N24Rik - - 10|10 RIKEN cDNA C430003N24 gene protein-coding 78790 Mm.325880 XR_875912 4930414F18Rik - - 16|16 A1 RIKEN cDNA 4930414F18 gene ncRNA 624568 Gm6512 EG624568 - X|X F3 predicted gene 6512 pseudo 102633182 Gm31073 - - 7|7 predicted gene, 31073 ncRNA 613255 AV226208 - - - expressed sequence AV226208 protein-coding 28141 DYzEms10 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 10 unknown 320508 Mm.151962 NM_198037 ENSMUSG00000028532 Cachd1 1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573 - 4|4 C6 cache domain containing 1 protein-coding 110737 Idd19 - - - insulin dependent diabetes susceptibility 19 protein-coding 116536 Alan2 - - 4 62.53 cM alloantigen response 2 unknown 108168985 XR_001784490 Gm46875 - - 4 E1|4 predicted gene, 46875 ncRNA 77528 Mm.447534 C030014A21Rik - - 13|13 RIKEN cDNA C030014A21 gene protein-coding 108167709 Gm46146 - - 9 E1|9 predicted gene, 46146 pseudo 56691 Mm.272871 NM_019964 ENSMUSG00000048206 Dnajb8 1700016F14Rik|1700031F10Rik|AI326313|mDj6 - 6 D1|6 39.25 cM DnaJ heat shock protein family (Hsp40) member B8 protein-coding 102638963 XR_374286 Gm35396 - - 2 B|2 predicted gene, 35396 ncRNA 110509 Tcra-V2.7 - - - T cell receptor alpha, variable-2.7 other 100504231 Mm.441035 NR_040432 ENSMUSG00000086894 Gm15708 - - 5 G2|5 83.27 cM predicted gene 15708 ncRNA 100503924 Mm.415621 NM_001357661 ENSMUSG00000089665 Fcor 2400009B08Rik - 8|8 A1.1 Foxo1 corepressor protein-coding 61364 D4Mit190 - - 4 81.46 cM DNA segment, Chr 4, Massachusetts Institute of Technology 190 unknown 258993 Mm.377781 NM_146991 ENSMUSG00000066257 Olfr206 MOR182-4 - 16|16 C1.3 olfactory receptor 206 protein-coding 52793 Mm.327932 NM_020622 ENSMUSG00000022938 Fam3b 2-21|9030624C24Rik|D16Jhu19e|ORF9|Pander - 16 C4|16 57.47 cM family with sequence similarity 3, member B protein-coding 108168669 XM_017318880 ENSMUSG00000094484 LOC108168669 - - Y A1 Y-linked testis-specific protein 1-like protein-coding 99412 Mm.106376 NM_133852 ENSMUSG00000002546 Golga2 AW555139|GM130|mKIAA4150 - 2|2 B golgi autoantigen, golgin subfamily a, 2 protein-coding 21877 Mm.2661 NM_009387 ENSMUSG00000025574 Tk1 D530002A18Rik|Tk-1|Tk1a|Tk1b - 11 E2|11 82.96 cM thymidine kinase 1 protein-coding 100418013 Gm18948 - - 18|18 A1 MAD2 mitotic arrest deficient-like 1 pseudogene pseudo 77934 A430106F12Rik - - 13|13 RIKEN cDNA A430106F12 gene protein-coding 104107 Pol17 Pol-17 - - viral polymerase 17 protein-coding 67058 2810428J06Rik - - 3|3 G3 RIKEN cDNA 2810428J06 gene protein-coding 414101 Mm.401339 NR_029447 ENSMUSG00000091994 E130317F20Rik - - 10 C1|10 RIKEN cDNA E130317F20 gene ncRNA 627901 Mm.374080 Gm14419 - - 2|2 H4 predicted gene 14419 unknown 16761 Labx lbx - - labial homeobox homolog protein-coding 72224 Mm.235535 NR_033613 ENSMUSG00000101963 1700001J11Rik - - 9|9 A5.1 ring finger protein 19A pseudogene pseudo 627577 Gm6771 EG627577 - 17|17 B2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 98209 Mm.440689 AA517465 - - - expressed sequence AA517465 unknown 105243898 Gm39619 - - 1|1 predicted gene, 39619 ncRNA 100418134 Gm13776 - - 2|2 E1 dyskeratosis congenita 1, dyskerin homolog pseudogene pseudo 105055 AW822243 - - - expressed sequence AW822243 unknown 74474 5230400M06Rik - - 14|14 RIKEN cDNA 5230400M06 gene protein-coding 100416615 Gm18164 - - 2|2 E1 olfactory receptor 1219 pseudogene pseudo 100042641 Gm3944 - - 12 A1.2|12 predicted gene 3944 protein-coding 74252 Mm.200383 NM_028840 ENSMUSG00000027599 Armc1 2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik - 3|3 A2 armadillo repeat containing 1 protein-coding 171036 Chab2 - - 10 34.8 cM cholesterol absorption 2 unknown 105247062 XR_880897 Gm42237 - - 5 B1|5 predicted gene, 42237 ncRNA 110626 H2-T21 H-2T21 - - histocompatibility 2, T region locus 21 protein-coding 100416345 Gm18057 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 12720 cla - - - clasper unknown 105247238 XR_881814 Gm42370 - - 7 A1|7 predicted gene, 42370 ncRNA 52302 Mm.441766 D4Ertd335e - - 4 31.66 cM DNA segment, Chr 4, ERATO Doi 335, expressed unknown 19317 Mm.130694 NM_021881 ENSMUSG00000062078 Qk 1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1 - 17 A1|17 7.75 cM quaking protein-coding 100417475 Gm18633 - - 1|1 C2 leucine rich repeat containing 15 pseudogene pseudo 27391 L1Md-Tf2 - - - L1 repeat, Tf subfamily, member 2 other 75745 Mm.293263 NR_028261 Rian 5530401N18Rik|C130089L09Rik|Meg8 - 12 F1|12 60.41 cM RNA imprinted and accumulated in nucleus ncRNA 56448 Mm.474216 NM_019823 ENSMUSG00000061740 Cyp2d22 2D22 - 15|15 E1 cytochrome P450, family 2, subfamily d, polypeptide 22 protein-coding 224756 Mm.246583 NM_177636 ENSMUSG00000037334 H2-M1 H-2M1|H2-Qa-Mb1|Mb1 - 17 B1|17 19.16 cM histocompatibility 2, M region locus 1 protein-coding 102467470 n-TRtcg2 n-Tr16 - 13 A3.1|13 nuclear encoded tRNA arginine 2 (anticodon TCG) tRNA 102640952 XR_377125 Gm15627 - - 5 G2|5 74.39 cM predicted gene 15627 ncRNA 71777 Mm.39999 NM_023626 ENSMUSG00000029670 Ing3 1300013A07Rik|P47ING3 - 6|6 A3.1 inhibitor of growth family, member 3 protein-coding 102640496 XR_385613 Gm36541 - - 17 C|17 predicted gene, 36541 ncRNA 101056232 XM_006538400 Gm29804 - - 4 A5|4 predicted gene, 29804 protein-coding 276919 Mm.482713 NM_177367 ENSMUSG00000049396 Gemin4 4932415L08Rik|AU015359 - 11|11 B5 gem nuclear organelle associated protein 4 protein-coding 381482 Mm.393866 NR_040591 Gm1653 - - 3|3 H3 predicted gene 1653 ncRNA 100039186 Mm.212721 NR_102437 ENSMUSG00000099718 Gm2087 - - 9|9 E2 predicted gene 2087 ncRNA 105243154 XR_870292 Gm39153 - - 8 A2|8 predicted gene, 39153 ncRNA 102634813 Gm32310 - - 15|15 predicted gene, 32310 ncRNA 27540 D15N5 277G21Sp6 - - DNA segment, Chr 15, NIH 5 unknown 105242815 XR_880076 Gm38924 - - 11 C|11 predicted gene, 38924 ncRNA 53334 Mm.20931 NM_016810 ENSMUSG00000010392 Gosr1 AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28 - 11|11 B5 golgi SNAP receptor complex member 1 protein-coding 105351 Mm.41450 NM_134067 ENSMUSG00000039182 AW209491 - - 13|13 A1 expressed sequence AW209491 protein-coding 76795 Mm.290975 NM_029745 ENSMUSG00000036644 Tbc1d9b - - 11|11 B1.3 TBC1 domain family, member 9B protein-coding 112264 Tnfp - - - tumor necrosis factor protection unknown 105245098 Gm40596 - - 10|10 predicted gene, 40596 ncRNA 22388 Mm.2654 NM_011715 ENSMUSG00000005103 Wdr1 Aip1|D5Wsu185e|rede - 5 B3|5 20.63 cM WD repeat domain 1 protein-coding 102640355 Gm36439 - - 18|18 predicted gene, 36439 ncRNA 493028 Bw8q1 - - 1 83.16 cM body weight at 8 weeks QTL 1 unknown 105245411 XR_872679 LOC105245411 - - - uncharacterized LOC105245411 ncRNA 100038420 Mm.484502 Gm10624 - - - predicted gene 10624 unknown 108167835 LOC108167835 - - 1 E2.1 40S ribosomal protein S6 pseudogene pseudo 105243147 Gm39147 Gm45239 - 8 A2|8 predicted gene, 39147 pseudo 102632584 XR_390991 Gm30622 - - 4 E2|4 predicted gene, 30622 ncRNA 545568 Gm5855 EG545568 - 3|3 G3 enolase 1, alpha non-neuron pseudogene pseudo 217733 Mm.110032 NM_172583 ENSMUSG00000034145 Tmem63c 4932420N09|9330187M14Rik - 12|12 D2 transmembrane protein 63c protein-coding 231841 Mm.271932 NM_172724 ENSMUSG00000000148 Brat1 AA881470|Baat1 - 5|5 G2 BRCA1-associated ATM activator 1 protein-coding 105243242 XR_879043 Gm39215 - - 8 C3|8 predicted gene, 39215 ncRNA 100628595 NR_039588 ENSMUSG00000093254 Mir5126 mir-5126|mmu-mir-5126|mu-mir-5126 - 1 C5|1 43.42 cM microRNA 5126 ncRNA 258291 Mm.451654 NM_146294 ENSMUSG00000100899 Olfr1167 MOR174-16 - 2|2 D olfactory receptor 1167 protein-coding 213326 Mm.27651 NM_198021 ENSMUSG00000069539 Scyl2 AU015688|AW536445|BC030932|CVAK104|D10Ertd802e - 10 C2|10 45.05 cM SCY1-like 2 (S. cerevisiae) protein-coding 109541 Hk - - - hook unknown 100418104 Gm38421 - - 1|1 D predicted gene, 38421 pseudo 104333 Pira9 - - - paired-Ig-like receptor A9 protein-coding 280621 Mm.212777 NM_175033 ENSMUSG00000046750 Selenov Selv - 7|7 A3 selenoprotein V protein-coding 112080 Alcw1 - - 1 80.33 cM alcohol withdrawal 1 unknown 667017 Gm8421 EG667017 - X|X A7.2 ribosomal protein L36 pseudogene pseudo 27509 B396H6T - - - DNA segment, B396H6T unknown 210808 Mm.89278 NM_172488 ENSMUSG00000044350 Lacc1 9030625A04Rik - 14|14 D3 laccase domain containing 1 protein-coding 100043403 Mm.354356 NM_001113806 Gm14410 - - 2 H4|2 predicted gene 14410 unknown 67540 4931428A05Rik - - 1|1 RIKEN cDNA 4931428A05 gene protein-coding 51999 D17Ertd262e - - 17 12.22 cM DNA segment, Chr 17, ERATO Doi 262, expressed unknown 544752 Mm.390314 NR_002321 ENSMUSG00000056579 Tug1 AI316828 - 11|11 A1 taurine upregulated gene 1 ncRNA 78910 Mm.160150 NM_080847 ENSMUSG00000029685 Asb15 4930400E23Rik|Asb-15 - 6|6 A3.1 ankyrin repeat and SOCS box-containing 15 protein-coding 17658 Ms71 MMS71 - - minisatellites detected by probe MMS71 other 70984 Mm.261842 NM_133732 ENSMUSG00000031938 4931406C07Rik - - 9|9 A2 RIKEN cDNA 4931406C07 gene protein-coding 105246804 Mm.441513 XR_001778601 D830024N08Rik Gm45707 - 8|8 C2 RIKEN cDNA D830024N08 gene ncRNA 102634556 Gm32108 - - 10|10 predicted gene, 32108 ncRNA 108168211 Gm46494 - - 15 A1|15 40S ribosomal protein S21 pseudogene pseudo 100502700 Mm.330516 NR_038349 ENSMUSG00000087519 AV039307 - - 2|2 E5 expressed sequence AV039307 ncRNA 333307 Mm.334557 NM_001033429 ENSMUSG00000071089 Trim75 Gm794 - 8|8 B3.1 tripartite motif-containing 75 protein-coding 53957 AA546796 - - - EST AA546796 protein-coding 101715 AL023008 - - - expressed sequence AL023008 protein-coding 102638440 Gm35006 - - 9|9 predicted gene, 35006 ncRNA 69882 Mm.272616 NM_175153 ENSMUSG00000034263 Ints14 2010321M09Rik|Vwa9 - 9|9 C integrator complex subunit 14 protein-coding 105245218 Gm40702 - - 10|10 predicted gene, 40702 ncRNA 50849 Mm.30051 NM_016698 ENSMUSG00000041740 Rnf10 AA675014|RIE2|mKIAA0262 - 5 F|5 56.01 cM ring finger protein 10 protein-coding 13306 Del(3)61H Del61H - - deletion, Chr 3, Harwell 61 other 100035906 Hrtfm7 - - 18 13.41 cM heart failure modifier 7 unknown 50912 Mm.266635 NM_016699 ENSMUSG00000017264 Exosc10 PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4 - 4|4 E2 exosome component 10 protein-coding 102640743 Gm36739 - - 8|8 predicted gene, 36739 ncRNA 102634711 XR_389456 Gm32230 - - 5 E5|5 predicted gene, 32230 ncRNA 100039138 Mm.427989 NR_040305 ENSMUSG00000097615 Gm2061 - - 1 H5|1 predicted gene 2061 ncRNA 192654 Mm.284770 NM_133792 ENSMUSG00000031903 Pla2g15 ACS|C87498|LLPL|Lpla2|Lypla3 - 8|8 D3 phospholipase A2, group XV protein-coding 259114 Mm.377855 NM_147110 ENSMUSG00000073964 Olfr570 MOR8-3 - 7|7 E3 olfactory receptor 570 protein-coding 102465617 NR_105987 ENSMUSG00000098569 Mir7020 Gm27759|mmu-mir-7020 - 4|4 D3 microRNA 7020 ncRNA 626832 Mm.441314 NM_001164689 ENSMUSG00000078887 Gm6710 1600017I02Rik|2310011F05Rik|2900089K14Rik|3100002L24Rik|WF-4 - 2|2 H4 predicted gene 6710 protein-coding 100885841 NR_049202 ENSMUSG00000096189 Mir344h-2 Gm23309|mmu-mir-344h-2 - 7|7 C microRNA 344h-2 ncRNA 78114 4930434O05Rik - - 6|6 RIKEN cDNA 4930434O05 gene protein-coding 16495 Mm.12955 NM_010596 ENSMUSG00000038201 Kcna7 Kv1.7 - 7 B3|7 29.3 cM potassium voltage-gated channel, shaker-related subfamily, member 7 protein-coding 117202 l9Rl1 pl-1 - - lethal, Chr 9, Russell 1 protein-coding 233199 Mm.358888 NM_146189 ENSMUSG00000038670 Mybpc2 - - 7|7 B3 myosin binding protein C, fast-type protein-coding 111543 Pmv25 Pmv-25 - - polytropic murine leukemia virus 25 other 112246 Sluc9 - - 8 62.82 cM susceptibility to lung cancer 9 unknown 102638720 Gm35214 - - 13|13 predicted gene, 35214 ncRNA 104346 Mm.117265 NM_018855 ENSMUSG00000040220 Gas8 Gas11 - 8|8 E1 growth arrest specific 8 protein-coding 408198 Mm.478742 NM_001001803 ENSMUSG00000060201 Spink7 EG408198|Ecg2 - 18 E1|18 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding 102638190 LOC102638190 - - 12 B3 cytochrome c oxidase subunit 7C, mitochondrial pseudogene pseudo 102635229 XR_384275 Gm32620 - - 15 E1|15 predicted gene, 32620 ncRNA 100041459 Gm3351 - - 3|3 E2 histocompatibility 2, M region locus 11 pseudogene pseudo 171509 Gasa3 - - 6 48.93 cM gastritis type A susceptibility locus 3 unknown 257871 Mm.253576 NR_034155 Olfr1372-ps1 GA_x5J8B7TR6JS-3-632|MOR256-54P|NP_TR6JSE50FPA - 11|11 B1.3 olfactory receptor 1372, pseudogene 1 pseudo 210162 Mm.135397 NM_175435 ENSMUSG00000030757 Zkscan2 9430065N20Rik|AW493225|Zfp694 - 7|7 F3 zinc finger with KRAB and SCAN domains 2 protein-coding 667379 XM_017318662 Spin2-ps2 EG667379|Gm14757 - X A7.3|X spindlin family, member 2, pseudogene 2 protein-coding 116905 Mm.41496 NM_144491 ENSMUSG00000078789 Dph1 2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1 - 11 B5|11 45.76 cM diphthamide biosynthesis 1 protein-coding 665570 Gm7693 EG665570 - 7|7 D1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100861828 Gm21249 - - Y|Y predicted gene, 21249 protein-coding 105244729 XR_872503 Gm40287 - - 12 A1.1|12 predicted gene, 40287 ncRNA 102636566 XM_011246785 Gm10103 EG383232 - 17|17 B1 predicted gene 10103 protein-coding 66326 Mm.45615 NM_025489 ENSMUSG00000027606 Dnajc5b 1700008A05Rik - 3|3 A2 DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 108168356 XR_001782263 Gm46606 - - 17 E4|17 predicted gene, 46606 ncRNA 170442 Mm.27335 NM_130452 ENSMUSG00000041660 Bbox1 AI874739 - 2|2 E3 butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase) protein-coding 67464 Mm.489765 NM_026174 ENSMUSG00000095463 Entpd4 1200014F22Rik|4930513O14Rik|A430102M06Rik|AI414893|Lysal1|mKIAA0392 - 14|14 D2 ectonucleoside triphosphate diphosphohydrolase 4 protein-coding 72169 Mm.273277 NM_023655 ENSMUSG00000032013 Trim29 1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726 - 9|9 A5.1 tripartite motif-containing 29 protein-coding 111653 Ms6-5 - - - minisatellite-5 detected by probe 33.6 other 66742 Mm.45302 NM_025738 ENSMUSG00000023257 Cypt1 4931420D14Rik|Ckt1r3|Cypt5|Cypt6|TISP55 - X|X A1.2 cysteine-rich perinuclear theca 1 protein-coding 102640684 XR_391605 Gm36696 Gm45107 - 7 D1|7 predicted gene, 36696 ncRNA 14459 Mm.4767 NM_010257 ENSMUSG00000017165 Gast GAS - 11 D|11 63.46 cM gastrin protein-coding 243958 Mm.24444 NM_172900 ENSMUSG00000030468 Siglecg 9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G - 7|7 B3 sialic acid binding Ig-like lectin G protein-coding 100039645 Rpl28-ps3 Gm12938 - 4|4 D2.2 ribosomal protein L28, pseudogene 3 pseudo 70568 Mm.38390 NM_027769 ENSMUSG00000028228 Cpne3 5430428M23Rik|5730450C07Rik|C85108|CPN3 - 4|4 A3 copine III protein-coding 435486 Rpl31-ps4 EG435486|Gm5677 - 16|16 C3.3 ribosomal protein L31, pseudogene 4 pseudo 19934 Mm.307846 NM_009079 ENSMUSG00000028936 Rpl22 2700038K18Rik - 4|4 E2 ribosomal protein L22 protein-coding 15288 Mm.247676 NM_013551 ENSMUSG00000032126 Hmbs PBGD|T25658|Ups|Uros1 - 9 A5.2|9 24.84 cM hydroxymethylbilane synthase protein-coding 76686 Mm.159258 NM_001081114 ENSMUSG00000013921 Clip3 1500005P14Rik|AI844915|Clipr-59 - 7|7 B1 CAP-GLY domain containing linker protein 3 protein-coding 102639087 Mm.428038 Gm35486 - - 3|3 predicted gene, 35486 protein-coding 632784 Gm11621 - - 11|11 E1 high mobility group box 2 pseudogene pseudo 105245878 Gm41261 - - 15|15 predicted gene, 41261 ncRNA 12018 Mm.2443 NM_007523 ENSMUSG00000057789 Bak1 Bak|N-BAK1|N-Bak - 17|17 A3.3 BCL2-antagonist/killer 1 protein-coding 11865 Mm.33970 NM_007489 ENSMUSG00000055116 Arntl Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b' - 7 F1|7 59.17 cM aryl hydrocarbon receptor nuclear translocator-like protein-coding 50929 Mm.103585 NM_016971 ENSMUSG00000074695 Il22 IL-22|IL-22a|ILTIFa|Iltif - 10 D2|10 66.67 cM interleukin 22 protein-coding 20915 su - - - surdescens unknown 102640024 XM_011249806 LOC102640024 - - 5 B1 diamine acetyltransferase 1-like protein-coding 15112 Mm.26634 NM_010403 ENSMUSG00000027261 Hao1 GOX|Gox1|Hao-1 - 2 F2|2 65.65 cM hydroxyacid oxidase 1, liver protein-coding 100042312 NM_001024713 Gm10128 - - 14|14 A1 alpha-takusan pseudogene pseudo 100528 AA517832 - - - expressed sequence AA517832 unknown 117573 DXJti3 - - X 29.32 cM DNA segment, Chr X, Japan Tobacco Inc. 3 unknown 105242559 XR_868672 Gm38737 - - 5 G2|5 predicted gene, 38737 ncRNA 213234 Mm.80075 NM_172515 ENSMUSG00000034151 Zbbx 4931432L23 - 3|3 E3 zinc finger, B-box domain containing protein-coding 192201 Mm.330764 NM_138685 ENSMUSG00000018211 Wfdc15b 9230106L14Rik|SWAM1|Wfdc15 - 2|2 H3 WAP four-disulfide core domain 15B protein-coding 100503038 Mm.446689 Gm19521 - - 14|14 22.25 cM predicted gene, 19521 unknown 112127 Bglq14 - - 5 75.55 cM body growth late QTL 14 unknown 13115 Mm.6216 NM_010009 ENSMUSG00000006724 Cyp27b1 Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr - 10|10 D3 cytochrome P450, family 27, subfamily b, polypeptide 1 protein-coding 107604 Spi5l - - - serine protease inhibitor 5-like protein-coding 100035402 Mpcp2 - - - myeloid progenitor cell proliferation 2 unknown 381201 Mm.441906 NM_001033448 ENSMUSG00000049562 Ap5b1 Gm962|beta-5 - 19|19 A adaptor-related protein complex 5, beta 1 subunit protein-coding 100090 Mm.24661 NM_133879 ENSMUSG00000028952 Zbtb48 0610011D15Rik|AI327031|Hkr3|TZAP - 4|4 E2 zinc finger and BTB domain containing 48 protein-coding 432870 Mm.425890 NM_001034881 ENSMUSG00000075553 Gm5464 EG432870 - 14 D1|14 predicted gene 5464 protein-coding 319533 Mm.373754 NR_131115 8030451O07Rik - - 16|16 C3.1 RIKEN cDNA 8030451O07 gene ncRNA 13176 Mm.167882 NM_007831 ENSMUSG00000060534 Dcc C030036D22Rik|Igdcc1 - 18 E2|18 45.24 cM deleted in colorectal carcinoma protein-coding 100039203 Mm.430746 Gm2099 - - 12 D2|12 predicted gene 2099 unknown 229285 Mm.235523 NM_144895 ENSMUSG00000036580 Spg20 AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610 - 3|3 C spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) protein-coding 105244057 Gm39739 - - 1|1 predicted gene, 39739 ncRNA 75949 Mm.18302 XR_868703 4930573C15Rik BB018237 - 5 G3|5 RIKEN cDNA 4930573C15 gene ncRNA 102635943 XR_373564 Gm33152 - - 1 C4|1 predicted gene, 33152 ncRNA 674842 XM_006534634 Gm9631 - - 11|11 E2 predicted gene 9631 protein-coding 102234 Mm.394877 AU022229 - - - expressed sequence AU022229 unknown 171201 Mm.377179 NM_134183 ENSMUSG00000115343 Vmn1r21 V1rc28 - 6|6 B3 vomeronasal 1 receptor 21 protein-coding 171257 Mm.377211 NM_134223 ENSMUSG00000069296 Vmn1r195 V1ri6 - 13|13 A3.1 vomeronasal 1 receptor 195 protein-coding 102633024 Gm29559 - - Y|Y predicted gene 29559 pseudo 74197 Mm.287795 NM_028812 ENSMUSG00000022828 Gtf2e1 2610024P03Rik|56kDa|AI303800|FE|TFIIE-A - 16|16 B3 general transcription factor II E, polypeptide 1 (alpha subunit) protein-coding 18211 Mm.80682 NM_001033124 ENSMUSG00000028072 Ntrk1 C80751|Tkr|TrkA|trk - 3 F1|3 38.62 cM neurotrophic tyrosine kinase, receptor, type 1 protein-coding 111248 Mif-ps7 - - 12 F1|12 macrophage migration inhibitory factor, pseudogene 7 pseudo 18718 Mm.313977 NM_008845 ENSMUSG00000026737 Pip4k2a AW742916|Pip5k2a - 2|2 A3 phosphatidylinositol-5-phosphate 4-kinase, type II, alpha protein-coding 102633104 XR_379209 ENSMUSG00000111867 Gm31013 - - 9 A4|9 predicted gene, 31013 ncRNA 102640260 Mm.270059 XR_381300 Gm36372 - - 12 A1.1|12 predicted gene, 36372 ncRNA 100417891 Gm18885 - - 14|14 E2.1 AFG3(ATPase family gene 3)-like 1 pseudogene pseudo 235582 Mm.335420 NM_174846 ENSMUSG00000020258 Glyctk 6230410P16Rik|C430006L12 - 9|9 F1 glycerate kinase protein-coding 101055741 Gm15112 - - X F2|X 68.46 cM predicted gene 15112 pseudo 15481 Mm.290774 NM_031165 ENSMUSG00000015656 Hspa8 2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10 - 9 A5.1|9 21.55 cM heat shock protein 8 protein-coding 102639699 LOC102639699 - - X A1.3 transcription initiation factor IIA subunit 1-like pseudo 114693 Skull6 E4|L4.2|QTL-S4.2 - 4 61.67 cM skull morphology 6 unknown 78048 Mm.252797 NR_110476 4930571O06Rik - - 8|8 E1 RIKEN cDNA 4930571O06 gene ncRNA 493047 Circp1 - - 12 7.79 cM circadian photosensitivity 1 unknown 102209 Mm.28452 NM_133968 ENSMUSG00000011837 Snapc2 0610007H10Rik|AU015675 - 8|8 A1.1 small nuclear RNA activating complex, polypeptide 2 protein-coding 109280109 LOC109280109 Mm1328 - - VISTA enhancer mm1328 biological-region 269585 Mm.153291 NM_177758 ENSMUSG00000061894 Zscan20 C130001F22|Zfp31|Zkscan20 - 4|4 D2.2 zinc finger and SCAN domains 20 protein-coding 100503335 Gm19640 - - 9 A4|9 15.79 cM e3 ubiquitin-protein ligase RNF5-like pseudo 61873 D1Mit336 - - 1 47.76 cM DNA segment, Chr 1, Massachusetts Institute of Technology 336 unknown 665752 Gm7770 EG665752 - X|X A5 hyaluronic acid binding protein 4 pseudogene pseudo 108168516 XM_017318708 LOC108168516 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 68988 Mm.246863 NM_027328 ENSMUSG00000008373 Prpf31 1500019O16Rik|2810404O06Rik|AW554706|PRP31|RP11 - 7|7 A1 pre-mRNA processing factor 31 protein-coding 100418302 NR_151516 4930555K19Rik - - 15|15 B3.1 leucine rich repeat and sterile alpha motif containing 1 pseudogene pseudo 102636229 XR_379736 Gm33357 - - 9 E3.3|9 predicted gene, 33357 ncRNA 110120568 LOC110120568 - - - VISTA enhancer mm1562 biological-region 102633146 Mm.399583 XR_389446 Gm31048 Gm42792 - 5 E5|5 predicted gene, 31048 ncRNA 103067 Mm.350729 AA522020 - - - expressed sequence AA522020 protein-coding 22110 Mm.20445 NM_009433 ENSMUSG00000047514 Tspyl1 Tspyl - 10|10 B1 testis-specific protein, Y-encoded-like 1 protein-coding 27870 D11Moh39e - - - DNA segment, Chr 11, KL Mohlke 39 expressed unknown 102638830 XR_882335 ENSMUSG00000101424 Gm28073 CH36-488A23.1|CH36-488A23.5 - Y C2|Y predicted gene 28073 ncRNA 100034881 Nbwa1 Sle14 - 12 8.06 cM NZB and NZW autoimmunity 1 unknown 625580 Mm.469893 NM_001105152 ENSMUSG00000095914 Vmn2r48 EG625580 - 7|7 A1 vomeronasal 2, receptor 48 protein-coding 62281 D19Mit45 - - 19 16.14 cM DNA segment, Chr 19, Massachusetts Institute of Technology 45 unknown 100416852 Gm18293 - - 19|19 C1 predicted gene, 18293 pseudo 102634464 XR_874179 Gm32041 - - 14 A1|14 predicted gene, 32041 ncRNA 12268 Mm.477109 NM_009780 ENSMUSG00000073418 C4b C4|Ss - 17 B1|17 18.29 cM complement component 4B (Chido blood group) protein-coding 16403 Mm.225096 NM_008397 ENSMUSG00000027111 Itga6 5033401O05Rik|AI115430|Cd49f|VLA-6 - 2 C2-C3|2 42.79 cM integrin alpha 6 protein-coding 72141 Mm.22456 NM_028121 ENSMUSG00000025236 Adpgk 2610017G09Rik|Adp-gk|C77577 - 9|9 B ADP-dependent glucokinase protein-coding 111454 Rnr12 - - - ribosomal RNA, Chr 12 cluster other 68279 Mm.116862 NM_026656 ENSMUSG00000011008 Mcoln2 3300002C04Rik|AI549968|C86638|TRPML2 - 3|3 H2 mucolipin 2 protein-coding 78834 Mm.273264 NM_030199 ENSMUSG00000050846 Zfp623 2610029D06Rik|AI847036 - 15|15 D3 zinc finger protein 623 protein-coding 85190 D19Mit95 - - 19 9.18 cM DNA segment, Chr 19, Massachusetts Institute of Technology 95 unknown 105247122 XR_881221 Gm42279 - - 4 A5|4 predicted gene, 42279 ncRNA 53097 90k2-T7 - - - DNA segment, 90k2-T7 unknown 102633832 XR_390534 Gm31563 - - 4 B1|4 predicted gene, 31563 ncRNA 70624 5730507A11Rik 9430076K19Rik - 2|2 RIKEN cDNA 5730507A11 gene protein-coding 102636463 Gm38488 - - 5|5 predicted gene, 38488 ncRNA 20210 Mm.14277 NM_011315 ENSMUSG00000040026 Saa3 AV098916|Saa-3|l7R3 - 7 B3|7 30.51 cM serum amyloid A 3 protein-coding 100035159 Nsila2 - - 3 27.73 cM novelty/stress induced locomotor activation 2 unknown 668409 Rpl31-ps11 EG668409|Gm9154 - 3 F2.1|3 ribosomal protein L31, pseudogene 11 pseudo 102640317 XR_379185 Gm36414 - - 9 A3|9 predicted gene, 36414 ncRNA 52617 D16Ertd550e - - 16 40.19 cM DNA segment, Chr 16, ERATO Doi 550, expressed unknown 75631 1700008F19Rik - - 19|19 RIKEN cDNA 1700008F19 gene protein-coding 414362 LOC414362 - - 17|17 A1 vitamin K epoxide reductase complex, subunit 1-like 1 pseudogene 3 pseudo 117599 Mm.214703 NM_080446 ENSMUSG00000020228 Helb AI447783|D10Ertd664e - 10 D2|10 67.94 cM helicase (DNA) B protein-coding 111298 Hmgn1-rs3 Hmg14-rs3 - - high mobility group nucleosomal binding domain 1, related sequence 3 pseudo 100036102 Mtxe6 - - - methotrextate efficacy 6 unknown 100035418 Wtlr1 - - - weight loss response 1 unknown 112192 Remslp4 - - - rapid eye movement sleep 4 unknown 102640487 XR_389528 Gm36535 Gm42487 - 5 F|5 predicted gene, 36535 ncRNA 108168459 Mm.327645 NR_153316 ENSMUSG00000093817 LOC108168459 - - X A2 uncharacterized LOC108168459 ncRNA 393082 Mm.268451 NM_199477 ENSMUSG00000056487 Mettl7a2 Gm921|UbiE2|Ubie - 15|15 F1 methyltransferase like 7A2 protein-coding 100040632 XR_877595 AA684185 Gm10528 - 18 E3|18 expressed sequence AA684185 unknown 102635185 XR_383111 Gm32587 - - 14 A2|14 predicted gene, 32587 ncRNA 100416975 Gm18344 - - 5|5 C3.1 SEC63-like pseudogene pseudo 105246666 XR_878410 Gm41920 - - 1 D|1 predicted gene, 41920 ncRNA 12892 Mm.291519 NM_007757 ENSMUSG00000022742 Cpox CPX|Cpo|HCP|cac|nct - 16|16 C1.2 coproporphyrinogen oxidase protein-coding 105247152 XR_881377 Gm42304 - - 4 C3|4 predicted gene, 42304 ncRNA 72041 Mm.294725 NM_028070 ENSMUSG00000039754 Alkbh4 2010004B12Rik|Abj4 - 5|5 G2 alkB homolog 4, lysine demethylase protein-coding 74228 XR_880601 1700016C19Rik - - 5|5 F RIKEN cDNA 1700016C19 gene unknown 434514 Vmn2r-ps17 - - 4|4 E1 vomeronasal 2, receptor, pseudogene 17 pseudo 212980 Mm.200307 NM_145977 ENSMUSG00000026435 Slc45a3 2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6 - 1|1 E4 solute carrier family 45, member 3 protein-coding 100418441 Gm19214 - - 1|1 A1 COP9 (constitutive photomorphogenic) homolog, subunit 2 pseudogene pseudo 16640 Mm.457996 NM_010651 ENSMUSG00000033024 Klra9 LY49I1|Ly49I - 6 F3|6 63.44 cM killer cell lectin-like receptor subfamily A, member 9 protein-coding 320107 Mm.208241 A630024J24Rik - - 5|5 RIKEN cDNA A630024J24 gene protein-coding 102632090 XR_385531 Gm30255 - - 17 B1|17 predicted gene, 30255 ncRNA 100502866 Gm20963 - - Y|Y predicted gene, 20963 protein-coding 75758 Mm.455792 NM_029418 ENSMUSG00000101892 9130401M01Rik AI849328 - 15|15 D1 RIKEN cDNA 9130401M01 gene protein-coding 360066 D17Jcs23 - - - DNA segment, Chr 17, John C. Schimenti 23 unknown 76737 Mm.292567 NM_029720 ENSMUSG00000023272 Creld2 5730592L21Rik|C85758 - 15|15 E3 cysteine-rich with EGF-like domains 2 protein-coding 654454 Mm.383637 NR_002879 ENSMUSG00000070977 Defb44-ps Defb44|Defb49|Defb49-ps|EG574082 - 1 A3|1 defensin beta 44, pseudogene pseudo 108167668 XR_001779248 Gm46123 - - 9 E2|9 predicted gene, 46123 ncRNA 667624 Gm8734 EG667624 - 8|8 B1.3 a disintegrin and metallopeptidase domain 39 pseudogene pseudo 106817 Mm.440584 AW556556 - - - expressed sequence AW556556 unknown 435518 Mm.328944 NR_027316 ENSMUSG00000002791 Pdxk-ps Gm9743 - 17|17 B1 pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene pseudo 258064 Mm.377340 NM_001011818 ENSMUSG00000107677 Olfr316 MOR285-3P|MOR285-6_p - 11|11 B1.3 olfactory receptor 316 protein-coding 217980 Mm.234944 NM_172585 ENSMUSG00000033499 Larp4b A630096F19|AI256361|D13Wsu64e|Larp5 - 13 A1|13 3.66 cM La ribonucleoprotein domain family, member 4B protein-coding 330959 Mm.24082 NM_183316 ENSMUSG00000032398 Snapc5 2010103A03Rik - 9|9 C small nuclear RNA activating complex, polypeptide 5 protein-coding 102637132 XR_382138 Gm34019 - - 13 A3.1|13 predicted gene, 34019 ncRNA 102636792 XM_011244861 ENSMUSG00000094578 LOC102636792 - - 14 A1 uncharacterized LOC102636792 protein-coding 100036113 Nilac5 - - 8 7.59 cM nicotine induced locomotor activity 5 unknown 387230 NR_029536 ENSMUSG00000065396 Mir99b Mirn99b|mmu-mir-99b - 17|17 A3.2 microRNA 99b ncRNA 100034961 Brmth5 - - 6 7.89 cM behavioral response to methamphetamines 5 unknown 72240 Mm.482897 NM_028164 ENSMUSG00000094690 1600014C23Rik - - 17|17 B3 RIKEN cDNA 1600014C23 gene protein-coding 102640190 XR_380461 Gm36318 - - 10 B4|10 predicted gene, 36318 ncRNA 100035873 Adip17 - - 16 2.33 cM adiposity 17 unknown 102639180 Mm.403945 XR_385838 Gm35551 - - 17 E4|17 predicted gene, 35551 ncRNA 102634000 XR_384382 Gm31690 - - 15 E3|15 predicted gene, 31690 ncRNA 100502800 Mm.484208 Gm19382 - - 3 F1|3 38.19 cM predicted gene, 19382 unknown 102642737 XR_866658 Gm38629 - - 2 E5|2 predicted gene, 38629 ncRNA 27774 94B16F - - - DNA segment, 94B16F (Research Genetics) unknown 93721 Mm.206774 NM_030703 ENSMUSG00000025196 Cpn1 0610011F20Rik|CPN - 19 C3|19 36.68 cM carboxypeptidase N, polypeptide 1 protein-coding 664989 Gm7438 EG664989 - X A3.1|X predicted pseudogene 7438 pseudo 18990 Pou3f-rs1 - - - POU domain, class 3, transcription factor, related sequence 1 protein-coding 108168297 XR_001781962 Gm46558 - - 16 C3.3|16 predicted gene, 46558 ncRNA 100124339 Traj49 Gm17012 - 14|14 C2 T cell receptor alpha joining 49 other 668232 Gm9057 EG668232 - 5|5 A3 predicted gene 9057 pseudo 102641761 Mm.291119 LOC102641761 - - - uncharacterized LOC102641761 ncRNA 100035320 Orgwt7 - - - organ weight 7 unknown 54624 Mm.7916 NM_019458 ENSMUSG00000003437 Paf1 5730511K23Rik|AA675045 - 7|7 B1 Paf1, RNA polymerase II complex component protein-coding 56458 Mm.29891 NM_019739 ENSMUSG00000044167 Foxo1 AI876417|Afxh|FKHR|Fkhr1|Foxo1a - 3 C|3 23.19 cM forkhead box O1 protein-coding 66385 Mm.88704 NM_023200 ENSMUSG00000026275 Ppp1r7 2310014J01Rik|SDS22 - 1|1 D protein phosphatase 1, regulatory (inhibitor) subunit 7 protein-coding 544928 Gm5790 - - 13 A5|13 coronin, actin binding protein 1C pseudogene pseudo 545809 Mm.357553 NR_152164 ENSMUSG00000105387 Gm29681 Gm42590 - 5|5 G2 predicted gene, 29681 ncRNA 100034840 Pcyts4 - - 17 7.65 cM plasmacytoma susceptibility 4 unknown 62582 D12Mit172 - - 12 21.09 cM DNA segment, Chr 12, Massachusetts Institute of Technology 172 unknown 107725 Rv2 Rv-2 - - Rauscher leukemia virus susceptibility 2 unknown 404742 Iglj4 EG404742|Gm5412|Igl-J4 - 16|16 A3 immunoglobulin lambda joining 4 pseudo 93891 Mm.172449 NM_053145 ENSMUSG00000046191 Pcdhb20 Pcdhb14|PcdhbT - 18|18 B3 protocadherin beta 20 protein-coding 100049605 Fmtq1 - - - femur mechanical trait QTL 1 unknown 105244935 XR_869961 Gm40457 Gm45018 - 7 F3|7 predicted gene, 40457 ncRNA 72206 1700001I21Rik - - 10|10 RIKEN cDNA 1700001I21 gene protein-coding 62881 D11Mit234 - - 11 25.68 cM DNA segment, Chr 11, Massachusetts Institute of Technology 234 unknown 74864 Mm.159344 NR_045921 ENSMUSG00000022116 4930449E01Rik - - 14|14 E2.3 RIKEN cDNA 4930449E01 gene ncRNA 18429 Mm.16745 NM_011025 ENSMUSG00000027301 Oxt OT|Oxy - 2 F1|2 63.24 cM oxytocin protein-coding 105244823 Gm40360 - - 6|6 predicted gene, 40360 ncRNA 100035730 Bdln6 - - 4 20.11 cM body length 6 unknown 20310 Mm.4979 NM_009140 ENSMUSG00000058427 Cxcl2 CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2 - 5 E1|5 44.78 cM chemokine (C-X-C motif) ligand 2 protein-coding 100316690 NR_035453 ENSMUSG00000088015 Mir1932 mir-1932|mmu-mir-1932 - 11 E2|11 83.47 cM microRNA 1932 ncRNA 100312527 Vmn1r-ps97 Gm11287 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 97 pseudo 100041751 Gm20885 - - Y|Y predicted gene, 20885 protein-coding 62041 D6Mit384 - - 6 27.38 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 384 unknown 102467600 n-TStga3 n-Ts26 - 10 B4|10 nuclear encoded tRNA serine 3 (anticodon TGA) tRNA 216799 Mm.54174 NM_145827 ENSMUSG00000032691 Nlrp3 AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1 - 11|11 B1.3 NLR family, pyrin domain containing 3 protein-coding 110645 Paep - - 2|2 progestagen-associated endometrial protein protein-coding 18111 Mm.34330 NM_010923 ENSMUSG00000067786 Nnat 5730414I02Rik|AW107673|Peg5 - 2 78.4 cM|2 H1 neuronatin protein-coding 108168539 XM_017318726 LOC108168539 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 408022 Mm.217385 NM_001001184 ENSMUSG00000038225 Primpol BC065112|Ccdc111 - 8|8 B1.1 primase and polymerase (DNA-directed) protein-coding 545622 Mm.246552 NM_011207 ENSMUSG00000038764 Ptpn3 9530011I20Rik|PTP-H1|PTPCL - 4 B3|4 31.66 cM protein tyrosine phosphatase, non-receptor type 3 protein-coding 319552 Mm.39649 NM_001242345 ENSMUSG00000071112 Spx B230216G23Rik|Npq - 6|6 G2 spexin hormone protein-coding 329797 Mm.246781 XR_390418 ENSMUSG00000086927 Gm11823 D930021N14 - 4|4 A1 predicted gene 11823 unknown 100040741 Gm2939 - - 3|3 H3 predicted gene 2939 pseudo 70065 Mm.425115 NM_027303 ENSMUSG00000027517 Ankrd60 1700019A24Rik|1700030G11Rik - 2|2 H3 ankyrin repeat domain 60 protein-coding 19513 Rb(2.5)2Tu Rb2Tu - - Robertsonian translocation, Chr 2 and 5, Tubingen 2 other 108167492 XR_001778333 Gm46015 - - 7 A3|7 predicted gene, 46015 ncRNA 12771 Mm.57050 NM_009914 ENSMUSG00000035448 Ccr3 CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3 - 9 F4|9 75.05 cM chemokine (C-C motif) receptor 3 protein-coding 100038445 Mm.471608 Gm10216 - - 11 A1|11 predicted gene 10216 protein-coding 100503625 Gm19802 - - 10|10 39.72 cM predicted gene, 19802 pseudo 623466 Gm6433 EG623466 - 5|5 G2 predicted gene 6433 pseudo 111789 Iapls2-13 - - - intracisternal A particle, lymphocyte specific 2-13 other 108857 Mm.482287 NM_175375 ENSMUSG00000024483 Ankhd1 1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085 - 18|18 B2 ankyrin repeat and KH domain containing 1 protein-coding 105243258 XR_879107 Gm39227 - - 8 C5|8 predicted gene, 39227 ncRNA 106026 Mm.444119 XR_384274 AW121686 - - 15 E1|15 expressed sequence AW121686 ncRNA 15494 Mm.158717 NM_001012306 ENSMUSG00000062410 Hsd3b3 9030618K22Rik|AI790201 - 3 F2.2|3 42.86 cM hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3 protein-coding 492954 Cocia5 - - 1 43.94 cM cocaine induced activation 5 unknown 110120413 LOC110120413 - - - VISTA enhancer mm599 biological-region 100043824 Gm4674 - - 14 E4|14 predicted gene 4674 pseudo 109831 Gv1 Gv-1 - - Gross virus antigen 1 protein-coding 111322 Hmgn1-rs12 Hmg14-rs12 - - high mobility group nucleosomal binding domain 1, related sequence 12 pseudo 228730 Mm.292352 NM_001033298 ENSMUSG00000074749 Kiz Gm114|Ncrna00153|Plk1s1 - 2|2 G1-G2 kizuna centrosomal protein protein-coding 545271 Gm5826 EG545271|Ppia-ps18_1039.1 - 18|18 E4 peptidyl-prolyl cis-trans isomerase A pseudogene 18_1039.1 pseudo 102639354 Gm35687 - - 16 B5|16 predicted gene, 35687 pseudo 723898 NR_029768 ENSMUSG00000065593 Mir339 Mirn339|mir-339|mmu-mir-339 - 5|5 G2 microRNA 339 ncRNA 209224 Mm.327730 NM_145951 ENSMUSG00000031109 Enox2 APK1|Cova1|tNOX - X|X A5 ecto-NOX disulfide-thiol exchanger 2 protein-coding 69739 Mm.276539 NR_037963 ENSMUSG00000085338 2410004I01Rik - - 11|11 E1 RIKEN cDNA 2410004I01 gene ncRNA 102632692 Gm30697 - - 10|10 predicted gene, 30697 ncRNA 109418 Lmr30 Lmr3 - - leishmaniasis resistance 30 unknown 436190 Gm14457 - - X|X A1.1 zinc finger protein 161 pseudogene pseudo 18406 Mm.14173 NM_011016 ENSMUSG00000061540 Orm2 Agp1|Orm-2 - 4 B3|4 33.96 cM orosomucoid 2 protein-coding 319982 Mm.33303 NR_102383 ENSMUSG00000106951 5930430L01Rik - - 5|5 G3 RIKEN cDNA 5930430L01 gene ncRNA 110036 Agp1 Agp-1 - - anti gp70 immune complex 1 protein-coding 667764 XM_006536414 Gm15854 - - 6|6 F3 predicted gene 15854 protein-coding 107688 Inf2q Inf2 - 17|17 subacute ozone induced inflammation QTL protein-coding 100034727 Rps12-ps3 Gm10195 - 19|19 D3 ribosomal protein S12, pseudogene 3 pseudo 62187 D15Mit44 - - 15 55.99 cM DNA segment, Chr 15, Massachusetts Institute of Technology 44 unknown 100043304 Amd-ps3 - - 18|18 E1 S-adenosylmethionine decarboxylase, pseudogene 3 pseudo 21040 T(10;13)3Ad T3Ad - - reciprocal translocation, Chr 10 and 13, Adler 3 other 17474 Mm.441101 NM_010819 ENSMUSG00000030144 Clec4d Clecsf8|Mpcl|mcl - 6 F2|6 58.33 cM C-type lectin domain family 4, member d protein-coding 102639942 Gm21899 - - Y|Y predicted gene, 21899 protein-coding 546663 Gm5963 EG546663 - 16|16 B3 predicted pseudogene 5963 protein-coding 56048 Mm.474138 NM_018886 ENSMUSG00000057554 Lgals8 1200015E08Rik|AI326142|D13Ertd524e|Lgals-8 - 13 A1|13 4.64 cM lectin, galactose binding, soluble 8 protein-coding 629091 Mm.364775 NR_153657 Gm29686 - - 16|16 B5 predicted gene, 29686 ncRNA 100312492 Vmn1r-ps31 - - 6 D1|6 vomeronasal 1 receptor, pseudogene 31 pseudo 100036168 Fatpad2 - - - fat pad 2 unknown 407824 Mm.393120 NR_033219 BC020402 - - 10 A1|10 cDNA sequence BC020402 ncRNA 102635684 Gm32959 - - 10|10 predicted gene, 32959 ncRNA 108168470 LOC108168470 - - X D 60S ribosomal protein L37 pseudogene pseudo 102465587 NR_105938 ENSMUSG00000098445 Mir6972 Gm27810|mmu-mir-6972 - 17|17 B1 microRNA 6972 ncRNA 13033 Mm.231395 NM_009983 ENSMUSG00000007891 Ctsd CD|CatD - 7|7 F5 cathepsin D protein-coding 18724 Mm.3189 NM_011088 Pira11 Gm14548|p91C - 7|7 A1 paired-Ig-like receptor A11 protein-coding 102638211 XR_384828 Gm34825 - - 16 B3|16 predicted gene, 34825 ncRNA 70031 Mm.150064 NM_027294 ENSMUSG00000041012 Cmtm8 2700018N07Rik|AA408515|Cklfsf8 - 9|9 F3 CKLF-like MARVEL transmembrane domain containing 8 protein-coding 102632709 Gm30707 - - Y|Y tRNA methyltransferase 112 homolog pseudo 71890 Mm.9648 NM_027985 ENSMUSG00000029003 Mad2l2 2310033C13Rik|G1-453-4|MAD2B|REV7|repro22 - 4|4 E2 MAD2 mitotic arrest deficient-like 2 protein-coding 73803 Mm.258921 NR_045349 ENSMUSG00000112444 4930401C15Rik - - 10|10 A4 RIKEN cDNA 4930401C15 gene ncRNA 75133 Mm.417818 NR_045440 ENSMUSG00000085157 4930515L19Rik - - X|X A4 RIKEN cDNA 4930515L19 gene ncRNA 102639628 XR_386933 Gm35893 - - X A6|X predicted gene, 35893 ncRNA 100042458 Mm.445295 Gm15478 - - 5|5 C3.1 predicted gene 15478 protein-coding 545850 Igkv5-45 23-45|Gm16850 - 6|6 C1 immunoglobulin kappa chain variable 5-45 other 85088 D15Mit7 - - 15 13.74 cM DNA segment, Chr 15, Massachusetts Institute of Technology 7 unknown 100048967 Gofm2 - - - gonadal fat mass 2 unknown 67772 Mm.289934 NM_201637 ENSMUSG00000053754 Chd8 5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564 - 14|14 C2 chromodomain helicase DNA binding protein 8 protein-coding 387349 Mm.377911 NM_207024 ENSMUSG00000071150 Tas2r121 T2R21|Tas2r13|Tas2r21|mGR21|mT2r48 - 6 G1|6 64.03 cM taste receptor, type 2, member 121 protein-coding 20532 Mm.227176 NM_009205 ENSMUSG00000024131 Slc3a1 D2H|NBAT|NTAA|RBAT - 17 E4|17 55.17 cM solute carrier family 3, member 1 protein-coding 214150 Mm.440915 NM_153402 ENSMUSG00000028842 Ago3 AW048688|C130014L07Rik|Eif2c3 - 4|4 D2.2 argonaute RISC catalytic subunit 3 protein-coding 105245269 XR_001779846 Gm40747 - - 10 C3|10 predicted gene, 40747 ncRNA 102642006 XM_011250768 Gm38591 Leutx - 7 A3|7 predicted gene, 38591 protein-coding 102467382 n-TStga1 n-Ts24 - 13 A3.1|13 nuclear encoded tRNA serine 1 (anticodon TGA) tRNA 53975 Mm.272826 NM_017397 ENSMUSG00000027905 Ddx20 GEMIN3|dp103 - 3|3 F2.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 protein-coding 320329 D830016K09Rik - - 12|12 RIKEN cDNA D830016K09 gene protein-coding 28240 Mm.276762 NM_138301 ENSMUSG00000009292 Trpm2 9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7 - 10 C1|10 39.72 cM transient receptor potential cation channel, subfamily M, member 2 protein-coding 80515 Mm.5324 NM_020591 ENSMUSG00000043419 Chd3os 2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21 - 11|11 B3 chromodomain helicase DNA binding protein 3, opposite strand ncRNA 70297 Mm.25531 NM_027375 ENSMUSG00000038039 Gcc2 0610043A03Rik|2210420P05Rik|2600014C01Rik|AW112121|mKIAA0336 - 10|10 B4 GRIP and coiled-coil domain containing 2 protein-coding 26557 Mm.228 NM_011983 ENSMUSG00000025813 Homer2 9330120H11Rik|AW539445|CPD|Vesl-2 - 7|7 D3 homer scaffolding protein 2 protein-coding 102632050 Gm38441 - - Y|Y predicted gene, 38441 pseudo 102634902 Gm32376 - - 13 D2.1|13 predicted gene, 32376 pseudo 100041586 Mm.440445 NM_001123368 ENSMUSG00000079710 Gm3417 - - 17|17 A2 predicted gene 3417 protein-coding 100418155 Gm13615 - - 2|2 C1.1 oral-facial-digital syndrome 1 gene homolog pseudogene pseudo 65963 Mm.28385 NM_023056 ENSMUSG00000029810 Tmem176b 1810009M01Rik|Clast1|Lr8 - 6 B2.3|6 23.75 cM transmembrane protein 176B protein-coding 102465623 NR_105997 ENSMUSG00000099254 Mir7030 Gm27267|mmu-mir-7030 - 5|5 F microRNA 7030 ncRNA 100503759 Mm.38101 NM_177810 ENSMUSG00000050765 Gm5084 A030007L22|EG328264 - 13|13 B2 predicted gene 5084 ncRNA 110499 Tcra-V1.7 - - - T cell receptor alpha, variable 1.7 other 102637552 Gm34330 - - 13|13 predicted gene, 34330 protein-coding 622757 Gm6354 EG622757 - 16|16 A1 predicted gene 6354 unknown 319852 9430064G09Rik - - 4|4 RIKEN cDNA 9430064G09 gene protein-coding 246161 L1Md-Gf56 GF56 - - L1 repeat, Gf subfamily, member 56 other 258019 Mm.67253 NM_001011800 ENSMUSG00000053251 Olfr212 4931403F16Rik|MOR119-4 - 6|6 E3 olfactory receptor 212 protein-coding 71873 NR_131161 ENSMUSG00000110916 2310003N18Rik - - 9|9 A5.3 RIKEN cDNA 2310003N18 gene ncRNA 67014 Mm.289150 NM_025910 ENSMUSG00000022724 Riox2 1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina - 16|16 C1.3 ribosomal oxygenase 2 protein-coding 666053 Gm7908 EG666053 - 15|15 D3 protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b pseudogene pseudo 102467268 n-TCgca5 n-Tc5 - 6 B2.3|6 nuclear encoded tRNA cysteine 5 (anticodon GCA) tRNA 102635372 XR_383670 Gm32729 - - 14 E1|14 predicted gene, 32729 ncRNA 105245028 XR_870983 Gm40539 - - 9 E3.1|9 predicted gene, 40539 ncRNA 320227 Mm.118933 9330121K16Rik - - 8|8 RIKEN cDNA 9330121K16 gene protein-coding 100034902 Trmq3 - - 2 61.76 cM T cell ratio modifier QTL 3 unknown 52184 Mm.259105 NM_025714 ENSMUSG00000028256 Odf2l 4733401D09Rik|9630045K08Rik|D3Ertd250e - 3 H2|3 69.36 cM outer dense fiber of sperm tails 2-like protein-coding 330409 Mm.333357 NM_001128151 ENSMUSG00000071226 Cecr2 2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740 - 6 F1|6 56.97 cM CECR2, histone acetyl-lysine reader protein-coding 102640983 Gm36915 - - 7|7 predicted gene, 36915 ncRNA 319596 Mm.136054 NR_102306 ENSMUSG00000100457 D830032E09Rik - - 1|1 E2.1 RIKEN cDNA D830032E09 gene ncRNA 384591 Gm5327 EG384591 - 7|7 B1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 13135 Mm.319038 NM_010015 ENSMUSG00000022174 Dad1 AI323713 - 14 C2|14 27.7 cM defender against cell death 1 protein-coding 102638075 Gm12628 - - 11 B2|11 37.81 cM predicted gene 12628 pseudo 11307 Mm.15691 NM_009593 ENSMUSG00000024030 Abcg1 AW413978|Abc8|White - 17|17 A3.3 ATP binding cassette subfamily G member 1 protein-coding 117167 Mm.31403 NM_054098 ENSMUSG00000012428 Steap4 1110021O17Rik|AI481214|Tiarp|Tnfaip9 - 5|5 A1 STEAP family member 4 protein-coding 18328 Mm.377104 NM_206903 ENSMUSG00000075384 Olfr3 MOR136-14|Y71 - 2|2 B olfactory receptor 3 protein-coding 60836 D4Mit91 - - 4 23.05 cM DNA segment, Chr 4, Massachusetts Institute of Technology 91 unknown 258358 Mm.377455 NM_146361 ENSMUSG00000073967 Olfr557 MOR18-3 - 7|7 E3 olfactory receptor 557 protein-coding 12055 Mm.89667 NM_009746 ENSMUSG00000030814 Bcl7c C230096E12Rik - 7|7 F3 B cell CLL/lymphoma 7C protein-coding 108168095 XR_001780988 LOC108168095 - - 13 B3 uncharacterized LOC108168095 ncRNA 105242911 XR_881966 Gm38990 - - 7 B2|7 predicted gene, 38990 ncRNA 73843 0610031I08Rik - - - RIKEN cDNA 0610031I08 gene protein-coding 26436 Mm.143686 NM_007676 ENSMUSG00000066760 Psg16 Cea11|PSG|bCEA - 7|7 A2 pregnancy specific glycoprotein 16 protein-coding 76770 Mm.327617 NM_029733 ENSMUSG00000095620 2010005H15Rik - - 16|16 B3 RIKEN cDNA 2010005H15 gene protein-coding 414070 Mm.445985 BC026600 - - - cDNA sequence BC026600 protein-coding 102640505 Gm29211 - - Y|Y predicted gene 29211 pseudo 621823 Mm.440151 NM_001281472 ENSMUSG00000078153 Psme2b PA28b-p|PA28b2|Psme2-like|Psme2b-ps - 11|11 B1.2 protease (prosome, macropain) activator subunit 2B protein-coding 109654 Cd24c - - - CD24c antigen protein-coding 105245840 Gm41229 - - 14|14 predicted gene, 41229 ncRNA 382003 Mm.484120 NM_001033467 Gm1698 - - 8|8 A2 predicted gene 1698 unknown 330490 Mm.212174 NM_194062 ENSMUSG00000040614 Nlrp9c AA636537|BB062542|Nalp-zeta|Nalp9c - 7|7 A3 NLR family, pyrin domain containing 9C protein-coding 102639747 Mm.393257 NR_153368 Gm35986 - - 3 G3|3 predicted gene, 35986 ncRNA 105246379 XR_877205 Gm41675 - - 18 A2|18 predicted gene, 41675 ncRNA 16522 Mm.328720 NM_010606 ENSMUSG00000043301 Kcnj6 BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv - 16 C4|16 55.44 cM potassium inwardly-rectifying channel, subfamily J, member 6 protein-coding 228913 Mm.22858 NM_001033299 ENSMUSG00000052056 Zfp217 4933431C08Rik|AW987152|Gm562|ZABC1|Znf217 - 2 H3|2 89.91 cM zinc finger protein 217 protein-coding 105246087 XR_875952 Gm41433 - - 16 B1|16 predicted gene, 41433 ncRNA 102465590 NR_105943 ENSMUSG00000098339 Mir6977 Gm27922|mmu-mir-6977 - 17|17 D microRNA 6977 ncRNA 102634087 XR_385088 Gm31754 - - 16 C4|16 predicted gene, 31754 ncRNA 14806 Mm.185993 NM_010349 ENSMUSG00000056073 Grik2 AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2 - 10 B3|10 24.87 cM glutamate receptor, ionotropic, kainate 2 (beta 2) protein-coding 66184 Mm.391542 NM_025405 ENSMUSG00000063171 Rps4l 1110033J19Rik|AA407494|Rps4y2 - 6|6 G3 ribosomal protein S4-like pseudo 257773 Gm5002 EG257773|GA_x5J8B7W6B6J-2580381-2580079 - 7 E3|7 olfactory receptor GA_x5J8B7W6B6J-2580381-2580079 pseudo 232143 Gm4874 EG232143 - 6|6 C3 high mobility group box 2 pseudogene pseudo 62608 D13Mit148 - - 13 59.69 cM DNA segment, Chr 13, Massachusetts Institute of Technology 148 unknown 208795 Mm.185518 NM_144794 ENSMUSG00000026519 Tmem63a BC014795|Tmem64a - 1|1 H4 transmembrane protein 63a protein-coding 110584 Tcra-V11.1 AV11S1|Va11.1|Va11.1b - - T cell receptor alpha, variable 11.1 other 101272 Mm.17733 AU043415 - - - expressed sequence AU043415 protein-coding 102639971 XR_391205 Gm36159 Gm44512 - 7 A3|7 predicted gene, 36159 ncRNA 74389 Mm.387411 4932429P19Rik - - 12|12 A2 RIKEN cDNA 4932429P19 gene protein-coding 102637932 XR_001778318 Gm34621 - - 7 F5|7 predicted gene, 34621 ncRNA 666882 Gm8344 EG666882 - X|X A7.1 quinolinate phosphoribosyltransferase pseudogene pseudo 108169037 XR_001784838 Gm46908 - - 5 B1|5 predicted gene, 46908 ncRNA 12111 Mm.2608 NM_007542 ENSMUSG00000031375 Bgn BG|DSPG1|PG-S1|PGI|SLRR1A - X A7.3|X 37.33 cM biglycan protein-coding 20222 Mm.358633 NM_013651 ENSMUSG00000020211 Sf3a2 66kDa|AW047242|PRP11|SFA66|Sap62 - 10 C1|10 39.72 cM splicing factor 3a, subunit 2 protein-coding 258457 Mm.377511 NM_146465 ENSMUSG00000059687 Olfr108 MOR156-5 - 17|17 B1 olfactory receptor 108 protein-coding 268650 Rps17-ps1 EG268650|Gm5041 - 13|13 A3.3 ribosomal protein S17, pseudogene 1 pseudo 387524 Mm.286149 NM_199143 ENSMUSG00000058446 Znrf2 1190002C14Rik|AU044205|D6Ertd365e - 6 B3|6 27.15 cM zinc and ring finger 2 protein-coding 75815 Mm.183387 NR_045764 4930470H14Rik - - 17|17 A1 RIKEN cDNA 4930470H14 gene ncRNA 105246217 Mm.428369 Gm16046 - - 17|17 8.95 cM predicted gene 16046 ncRNA 111499 Xmmv76 Xmmv-76 - - xenotropic-MCF leukemia virus 76 other 257799 Olfr1409-ps1 EG257799|GA_x5J8B7W5Q1F-395172-396104|Gm5018 - 1 H3|1 olfactory receptor 1409, pseudogene 1 pseudo 665591 Rpl36-ps9 EG665591|Gm7703 - 5 G2|5 ribosomal protein L36, pseudogene 9 pseudo 66780 Mm.79193 NM_025763 ENSMUSG00000025288 4933436I01Rik - - X|X A7.1 RIKEN cDNA 4933436I01 gene protein-coding 245643 Mm.208683 NM_177750 ENSMUSG00000042425 Frmpd3 B930041G04|EG245643|Gm29750 - X F1|X FERM and PDZ domain containing 3 protein-coding 629310 Rpl10-ps4 EG629310|Gm6962 - X|X C1 ribosomal protein L10, pseudogene 4 pseudo 100036752 Fbtq7 - - - femoral bone trait QTL 7 unknown 330830 Mm.277112 NM_001042715 ENSMUSG00000031786 Drc7 Ccdc135|Gm770|SRG-L|SRG-S - 8|8 C5 dynein regulatory complex subunit 7 protein-coding 622845 Gm6365 EG622845|Gm1829 - 19|19 A predicted pseudogene 6365 pseudo 100505227 Mm.490689 A430107J10Rik - - 8|8 RIKEN cDNA A430107J10 gene unknown 329655 LOC329655 - - 3|3 D uncharacterized LOC329655 unknown 21664 Mm.3117 NM_009344 ENSMUSG00000020205 Phlda1 DT1P1B11|TDAG51|Tdag - 10|10 D1 pleckstrin homology like domain, family A, member 1 protein-coding 102634927 XR_390853 Gm32394 - - 4 D3|4 predicted gene, 32394 ncRNA 105246660 Mm.416909 XR_878390 Gm28722 - - 1 D|1 predicted gene 28722 ncRNA 545864 XR_035706 Gm5879 EG545864 - 6|6 D1 predicted gene 5879 unknown 21434 tcl4 tcl-4 - - t-complex lethal 4 unknown 68099 Mm.25340 NM_026558 ENSMUSG00000028218 Fam92a 6720467C03Rik|Fam92a1 - 4|4 A1 family with sequence similarity 92, member A protein-coding 102636368 XR_373317 Gm33454 - - 1 B|1 predicted gene, 33454 ncRNA 70902 Mm.55870 NM_027599 ENSMUSG00000033794 Lpcat2b 4921521K07Rik|Aytl1b - 5|5 E5 lysophosphatidylcholine acyltransferase 2B protein-coding 100417715 Rpap3-ps2 Gm18778 - 7|7 A1 RNA polymerase II associated protein 3, pseudogene 2 pseudo 22269 Mm.4453 NM_009476 ENSMUSG00000041523 Upk2 AW491716|UPII - 9 A5.2|9 24.84 cM uroplakin 2 protein-coding 105245959 XR_875365 Gm41330 - - 15 D1|15 predicted gene, 41330 ncRNA 117217 Ap1q - - 1 63.28 cM alcohol preference 1 QTL unknown 105243785 XR_882509 LOC105243785 - - 17 B1 uncharacterized LOC105243785 ncRNA 102634221 Mm.406737 Gm31858 - - 7|7 predicted gene, 31858 ncRNA 14161 Mm.88793 NM_010196 ENSMUSG00000028001 Fga Fib - 3 E3|3 36.96 cM fibrinogen alpha chain protein-coding 100416318 Gm18035 - - 1|1 C3 ribosomal protein L19 pseudogene pseudo 668286 Gm9086 EG668286 - 14|14 D1 predicted gene 9086 pseudo 105244858 Gm40391 - - 6|6 predicted gene, 40391 ncRNA 102635016 Gm28419 - - 1 B|1 predicted gene 28419 pseudo 100125855 Dss1 - - - decreased sperm survival 1 unknown 102634735 XR_377898 Gm32247 - - 6 D3|6 predicted gene, 32247 ncRNA 194735 Mm.422929 NM_001034856 ENSMUSG00000098348 Btg1-ps2 4930430D24Rik - X|X A3.3 B cell translocation gene 1, anti-proliferative, pseudogene 2 protein-coding 105246496 Mm.109270 NR_155448 4930578L24Rik - - 18|18 E2 RIKEN cDNA 4930578L24 gene ncRNA 105242418 XR_001781480 Gm38690 - - 14 A1|14 predicted gene, 38690 protein-coding 105246067 Gm41417 - - 16|16 predicted gene, 41417 ncRNA 12929 Mm.21048 NM_007764 ENSMUSG00000006134 Crkl 1110025F07Rik|AA589403|AI325100|Crkol - 16|16 A3 v-crk avian sarcoma virus CT10 oncogene homolog-like protein-coding 52469 Mm.52 NM_026618 ENSMUSG00000017188 Coa3 1810033A19Rik|Ccdc56|D11Ertd99e|HSPC009 - 11 D|11 64.56 cM cytochrome C oxidase assembly factor 3 protein-coding 112101 Etohc1 - - 2 24.26 cM ethanol consumption 1 unknown 105244970 Gm40488 - - 8|8 predicted gene, 40488 ncRNA 100504663 Mm.287279 NM_172599 ENSMUSG00000037526 Atg14 4832427M01|Atg14L|D14Ertd114e|D14Ertd436e - 14 C1|14 24.6 cM autophagy related 14 protein-coding 102636619 XR_382386 Gm33631 - - 13 B1|13 predicted gene, 33631 ncRNA 114474 Sle11 Bxs5 - 3 38.19 cM systematic lupus erythematosus susceptibility 11 unknown 108168341 XR_001782187 LOC108168341 - - 17 B1 uncharacterized LOC108168341 ncRNA 100418391 Gm19180 - - 2|2 G3 acidic (leucine-rich) nuclear phosphoprotein 32 family, member E pseudogene pseudo 16560 Mm.276408 NM_008440 ENSMUSG00000014602 Kif1a ATSV|C630002N23Rik|Gm1626|Kns1 - 1|1 D kinesin family member 1A protein-coding 54635 Mm.331089 NM_019971 ENSMUSG00000028019 Pdgfc 1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E - 3|3 E3 platelet-derived growth factor, C polypeptide protein-coding 14587 Mm.16520 NM_010280 ENSMUSG00000024366 Gfra3 GFRalpha3|Y15110 - 18|18 B1 glial cell line derived neurotrophic factor family receptor alpha 3 protein-coding 61074 D2Mit315 - - 2 9.07 cM DNA segment, Chr 2, Massachusetts Institute of Technology 315 unknown 109611 Es26 Es-26 - - esterase 26 protein-coding 102635899 Gm33119 - - 13|13 predicted gene, 33119 ncRNA 105244879 Gm14330 - - 6|6 66.47 cM predicted gene 14330 ncRNA 61469 D7Mit102 - - 7 67.62 cM DNA segment, Chr 7, Massachusetts Institute of Technology 102 unknown 105244798 XR_868593 LOC105244798 - - 5 G2 uncharacterized LOC105244798 ncRNA 100526544 NR_037215 ENSMUSG00000092847 Mir344d-1 mir-344d-1|mmu-mir-344d-1 - 7 C|7 34.27 cM microRNA 344d-1 ncRNA 67263 Mm.490418 NM_145456 Zswim6 2900036G02Rik|mKIAA1577 - 13|13 D2.1 zinc finger SWIM-type containing 6 protein-coding 21076 T(13;14)69H T69H - - reciprocal translocation, Chr 13 and 14, Harwell 69 other 320845 Mm.274484 NM_001033396 A230056P14Rik - - 7|7 B5 RIKEN cDNA A230056P14 gene ncRNA 15427 Mm.4765 NM_008272 ENSMUSG00000036139 Hoxc9 Hox-3.2 - 15 F3|15 58.04 cM homeobox C9 protein-coding 105245772 XR_874678 Gm41168 - - 14 D1|14 predicted gene, 41168 ncRNA 102633385 Gm31220 - - 13|13 predicted gene, 31220 ncRNA 94118 Kifc5c-ps Kifc5c - 10|10 D2 kinesin family member C5C, pseudogene pseudo 102638384 XR_388594 Gm34963 - - 11 B1.1|11 predicted gene, 34963 ncRNA 102641372 XR_870948 Gm38553 - - 9 E2|9 predicted gene, 38553 ncRNA 100043688 Mm.275426 NM_001160152 ENSMUSG00000096569 Amy2a2 mAmy2-5 - 3 F3|3 amylase 2a2 protein-coding 27603 D0Dcr4 - - - DNA segment, Derry C. Roopenian 4 unknown 105246297 XR_876876 Gm41601 - - 17 C|17 predicted gene, 41601 ncRNA 105246225 XR_876643 Gm41537 - - 17 A3.2|17 predicted gene, 41537 ncRNA 100417885 Gm18880 - - 13|13 A1 lysophosphatidylcholine acyltransferase 4 pseudogene pseudo 100048982 Mm.437094 Gm13558 - - 2|2 predicted gene 13558 unknown 56392 Mm.228669 NM_019658 ENSMUSG00000024976 Shoc2 AU017287|Sur8|mKIAA0862 - 19|19 D2 soc-2 (suppressor of clear) homolog (C. elegans) protein-coding 14823 Mm.320732 NM_008174 ENSMUSG00000024211 Grm8 A230002O04|GluR8|Gprc1h|mGluR8 - 6|6 A3.1-A3.2 glutamate receptor, metabotropic 8 protein-coding 170793 Ptz1b Ptz2a - 2 18.29 cM pentylenetetrazol induced seizure susceptibility 1b unknown 61274 D2Mit240 - - 2 28.4 cM DNA segment, Chr 2, Massachusetts Institute of Technology 240 unknown 30959 Mm.291723 NM_013932 ENSMUSG00000032101 Ddx25 AW047046|GRTH - 9|9 A4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 protein-coding 232016 Mm.333084 NM_001081665 ENSMUSG00000037973 Ccdc129 D530004J12Rik|Gm458 - 6|6 B3 coiled-coil domain containing 129 protein-coding 100036142 Epfq4 - - - epididymal fat pad weight QTL 4 unknown 381784 Igkv6-25 19-25|Gm16943 - 6|6 C1 immunoglobulin kappa chain variable 6-25 other 102402 Mm.459029 XR_873623 ENSMUSG00000113342 AA414992 - - 13|13 B3 expressed sequence AA414992 unknown 116915 D13Jde2 - - - DNA segment, Chr 13, Jan Deussing 2 unknown 17546 Ms10k MMS10-K - - minisatellite 10k detected by probe MMS10 other 207212 Mm.29954 NM_001081116 ENSMUSG00000032875 Arhgef17 8030463K16|AI428794|AW558066|BC035332|mKIAA0337 - 7|7 E2 Rho guanine nucleotide exchange factor (GEF) 17 protein-coding 102639309 XR_388967 Gm35650 - - 11 D|11 predicted gene, 35650 ncRNA 108167690 XR_001779326 Gm26797 - - 9 F4|9 predicted gene, 26797 ncRNA 102634582 XR_384786 Gm32126 - - 16 B1|16 predicted gene, 32126 ncRNA 69742 Mm.28626 NM_027194 ENSMUSG00000031556 Tm2d2 2410018G23Rik|Blp1 - 8|8 A2 TM2 domain containing 2 protein-coding 100041627 Gm3440 - - 7|7 A1 adipose differentiation related pseudo 100038355 Mm.471552 Runx2os1 Gm10497 - - runt related transcription factor 2, opposite strand 1 unknown 434026 Igkv2-116 EG434026|Gm5572|IGKhk24 - 6 C1|6 immunoglobulin kappa variable 2-116 pseudo 271813 Mm.61146 NM_178755 ENSMUSG00000040812 Agbl2 4930524K04|A430081C19Rik|CCP2 - 2|2 E1 ATP/GTP binding protein-like 2 protein-coding 70577 5730448F11Rik - - - RIKEN cDNA 5730448F11 gene protein-coding 668510 Ighv1-28 EG668510|Gm9213|Igh - 12|12 F2 immunoglobulin heavy variable 1-28 pseudo 320233 Mm.447850 D030004A10Rik - - 4|4 RIKEN cDNA D030004A10 gene protein-coding 100503654 Mm.483953 Gm19816 - - 3 E1|3 29.17 cM predicted gene, 19816 unknown 13531 Mm.389929 NM_007887 ENSMUSG00000054568 Usp17la Dub1|USP17-A - 7 E3|7 55.69 cM ubiquitin specific peptidase 17-like A protein-coding 73103 Mm.271602 NM_028439 ENSMUSG00000026388 3110009E18Rik - - 1|1 E2.3 RIKEN cDNA 3110009E18 gene protein-coding 319805 C130073E24Rik - - 8|8 RIKEN cDNA C130073E24 gene protein-coding 108168066 XR_001780867 Gm46402 - - 13 A2|13 predicted gene, 46402 ncRNA 108531 Ms13-9 Ms13-Ps9 - - minisatellite 13-9 detected by M13 phage probe other 229541 Mm.30571 NM_201407 ENSMUSG00000042404 Dennd4b - - 3|3 F1 DENN/MADD domain containing 4B protein-coding 102633751 XR_877536 Gm31502 - - 18 E2|18 predicted gene, 31502 ncRNA 102633918 Mm.400690 XR_868106 Gm12916 - - 4 D2.2|4 57.74 cM predicted gene 12916 ncRNA 100040524 Gm2822 - - 13 D2.1|13 predicted gene 2822 protein-coding 21423 Mm.3406 NM_011548 ENSMUSG00000020167 Tcf3 A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21 - 10 C1|10 39.72 cM transcription factor 3 protein-coding 100417697 Gm18767 - - 2|2 H1 zinc finger, FYVE domain containing 21 pseudogene pseudo 493033 Lith6 - - 6 77.64 cM lithogenic gene 6 unknown 66589 Mm.278783 NM_023230 ENSMUSG00000078923 Ube2v1 0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1 - 2 H3|2 87.44 cM ubiquitin-conjugating enzyme E2 variant 1 protein-coding 106964 AL022850 - - - expressed sequence AL022850 unknown 111670 Mintd - - - Moloney MuLV integration site, EC cells, d other 408191 Mm.479439 NM_001164286 ENSMUSG00000091318 Gm5415 EG408191|Senp14 - 1|1 B predicted gene 5415 protein-coding 12029 Mm.12930 NM_007528 ENSMUSG00000000317 Bcl6b Bazf - 11|11 B3 B cell CLL/lymphoma 6, member B protein-coding 69459 Mm.41735 NM_027086 ENSMUSG00000055720 Ubl7 2300004C15Rik - 9 B|9 ubiquitin-like 7 (bone marrow stromal cell-derived) protein-coding 258042 Mm.377337 NM_001011811 ENSMUSG00000095929 Olfr487 MOR204-29P|MOR204-31P|Olfr1538-ps1 - 7|7 E3 olfactory receptor 487 protein-coding 105246404 XR_877312 Gm41696 - - 18 B2|18 predicted gene, 41696 ncRNA 665121 Gm7502 EG665121 - 18|18 A1 ribosomal protein S2 pseudogene pseudo 257882 Mm.479489 NM_177061 ENSMUSG00000090824 Olfr1344 4930415J05Rik|MOR124-1 - 7|7 A1 olfactory receptor 1344 protein-coding 102640531 XR_386938 Gm36570 - - X A6|X predicted gene, 36570 ncRNA 105242436 Gm38705 - - 12|12 predicted gene, 38705 ncRNA 100316775 NR_035473 ENSMUSG00000089151 Mir1950 mmu-mir-1950 - 19 C1|19 29.79 cM microRNA 1950 ncRNA 105244404 Gm40018 - - 2|2 predicted gene, 40018 pseudo 111696 Igh-VQ52N - - - immunoglobulin heavy chain (Q52N family) other 102635139 Gm21755 - - Y|Y predicted gene, 21755 protein-coding 667079 Gm8446 EG667079 - Y|Y A1 sacsin pseudogene pseudo 100041835 NM_001112664 Gm10039 - - 11|11 D ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c, isoform 1 pseudogene pseudo 433297 Mm.491228 Gm5526 EG433297 - 1|1 C1.1 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle pseudogene pseudo 394434 Mm.300095 NM_201644 ENSMUSG00000090175 Ugt1a9 UDPGT|UDPGT 1-9|UGT1-09|UGT1.9|UGTP4|Ugt1a12|mUGTBr/P - 1|1 D UDP glucuronosyltransferase 1 family, polypeptide A9 protein-coding 12753 Mm.3552 NM_007715 ENSMUSG00000029238 Clock 5330400M04Rik|KAT13D - 5 C3.3|5 40.63 cM circadian locomotor output cycles kaput protein-coding 94181 Mm.249349 NM_053179 ENSMUSG00000028334 Nans 4632418E04Rik|BB056474|Sas - 4|4 B1 N-acetylneuraminic acid synthase (sialic acid synthase) protein-coding 102631986 XR_381621 Gm15524 - - 12 C1|12 24.53 cM predicted gene 15524 ncRNA 15212 Mm.27816 NM_010422 ENSMUSG00000021665 Hexb - - 13 D1|13 50.66 cM hexosaminidase B protein-coding 102640626 XR_001781711 Gm36644 - - 15 E1|15 predicted gene, 36644 ncRNA 24110 Mm.326911 NM_011909 ENSMUSG00000030107 Usp18 1110058H21Rik|AW047653|UBP43|Ubp15 - 6 F1|6 57.17 cM ubiquitin specific peptidase 18 protein-coding 224647 Mm.196577 NM_001033279 ENSMUSG00000056692 D17Wsu92e AU020189|C030010A15|C80239 - 17 A3.3|17 14.59 cM DNA segment, Chr 17, Wayne State University 92, expressed protein-coding 11650 Mm.195224 NM_007433 ENSMUSG00000026246 Alppl2 Akp5|C77216|D1Ertd816e|EAP - 1 C5|1 44.05 cM alkaline phosphatase, placental-like 2 protein-coding 667486 Gm8661 EG667486 - 9|9 E3.3 predicted gene 8661 pseudo 320628 Mm.458261 A130038J17Rik - - 14|14 RIKEN cDNA A130038J17 gene protein-coding 212706 Mm.41760 NM_145974 ENSMUSG00000001053 N4bp3 C330016O10Rik - 11|11 B1.3 NEDD4 binding protein 3 protein-coding 18442 Mm.3000 NM_008773 ENSMUSG00000032860 P2ry2 P2U1|P2Y2 - 7|7 E2 purinergic receptor P2Y, G-protein coupled 2 protein-coding 100035281 Hdlq42 - - - HDL QTL 42 unknown 100101411 Pbwg1.5 - - - postnatal body weight growth 1.5 unknown 70241 2810416A17Rik - - 14|14 RIKEN cDNA 2810416A17 gene protein-coding 619548 Mm.387101 NM_001034910 ENSMUSG00000054763 Defb42 BD-42|Defb44|mBD-42 - 14|14 D1 defensin beta 42 protein-coding 56014 Mm.331571 NM_019485 ENSMUSG00000050215 Olfr70 MOR262-10|mOR6 - 4|4 B1 olfactory receptor 70 protein-coding 12552 Mm.1571 NM_009866 ENSMUSG00000031673 Cdh11 Cad11|OSF-4 - 8 D1|8 50.44 cM cadherin 11 protein-coding 102632434 XR_876741 Gm30509 - - 17 B1|17 predicted gene, 30509 ncRNA 102633296 XR_376624 Gm31156 - - 4 D2.2|4 predicted gene, 31156 ncRNA 117115 D12Pgn5 - - - DNA segment, Chr 12, Paigen 5 unknown 110727 Odc-rs18 - - - ornithine decarboxylase, related sequence 18 protein-coding 632778 Mm.423112 NM_001039243 ENSMUSG00000074261 Erich4 EG632778|Gm7092|Kseg1 - 7|7 A3 glutamate rich 4 protein-coding 100418124 Gm19017 - - 14|14 D2 NSA2 ribosome biogenesis homolog pseudogene pseudo 102467607 n-TTtgt1 n-Tt15 - 14 C1|14 nuclear encoded tRNA threonine 1 (anticodon TGT) tRNA 692173 Igkv11-114 ic11 - 6|6 C1 immunoglobulin kappa chain variable pseudo 100124469 NR_030606 ENSMUSG00000077890 Mir875 Mirn875|mir-875|mmu-mir-875 - 15 B3.1|15 microRNA 875 ncRNA 27583 D5Buc15 536J3.T7 - 5 37.61 cM DNA segment, Chr 5, Bucan 15 unknown 385338 Mm.298019 NM_001205086 Ssxa1 Gm1532|Ssxa - X A1.3|X 16.61 cM synovial sarcoma, X member A1 protein-coding 18640 Mm.249861 NM_008825 ENSMUSG00000026409 Pfkfb2 4930568D07Rik - 1|1 E4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 protein-coding 621499 XM_001481002 Frg2f10 Gm6234 - 14 E2.3|14 FSHD region gene 2 family member 10 protein-coding 16379 Is(7;1)40H Is40H - - insertion, Chr 7 and 1, Harwell 40 other 97017 D2Mgi52 C85938 - - DNA Segment, Chr 2, Mouse Genome Informatics 52 unknown 105245328 XR_872182 LOC105245328 - - 10 D3 uncharacterized LOC105245328 ncRNA 211924 Mm.391118 NM_181680 ENSMUSG00000034774 Dsg1c Dsg1gamma|Dsg6|dsg1g - 18 A2|18 11.26 cM desmoglein 1 gamma protein-coding 621119 Rps11-ps1 EG621119|Gm6202 - 9|9 B ribosomal protein S11, pseudogene 1 pseudo 100035754 Mbis3 Bah2 - - Mycobacterium bovis-induced systemic lupus erythematosus 3 unknown 74015 Mm.22025 NM_028715 ENSMUSG00000070000 Fcho1 3322402E17Rik|N28152 - 8|8 B3.3 FCH domain only 1 protein-coding 105245107 XR_871460 Gm40601 - - 10 A1|10 predicted gene, 40601 ncRNA 100502694 Mm.335371 XR_871045 Gm19325 - - 9 E3.3|9 50.82 cM predicted gene, 19325 unknown 111707 Mpmv14 Mpmv-14 - - modified polytropic murine leukemia virus 14 other 105244397 XR_867091 Gm40015 - - 2 H4|2 predicted gene, 40015 ncRNA 102637677 XR_390380 Gm34428 - - 4 A1|4 predicted gene, 34428 ncRNA 100043536 Mm.484979 NM_001166844 ENSMUSG00000096386 Vmn1r100 Gm10671 - 7|7 A3 vomeronasal 1 receptor 100 protein-coding 231148 Mm.254446 NM_177678 ENSMUSG00000029095 Ablim2 AI606905|C230091L11 - 5|5 B3 actin-binding LIM protein 2 protein-coding 105244584 XR_867737 Gm40176 - - 3 H2|3 predicted gene, 40176 ncRNA 101056304 LOC101056304 - - - tropomyosin alpha-3 chain-like pseudo 56027 D5Buc52 - - - DNA segment, Chr 5, Bucan 52 unknown 100041427 Gm15196 - - X|X F4 predicted gene 15196 pseudo 111898 Xltr8 - - - xenotropic long terminal repeat-containing proviral locus 8 other 17210 Mm.1639 NM_008562 ENSMUSG00000038612 Mcl1 AW556805|Mcl-1 - 3 F2.1|3 40.74 cM myeloid cell leukemia sequence 1 protein-coding 102635699 XR_383915 Gm32970 - - 15 B3.1|15 predicted gene, 32970 protein-coding 69996 Mm.387129 1700027A07Rik - - 15|15 RIKEN cDNA 1700027A07 gene unknown 633774 LOC633774 - - - Ig heavy chain V variable region other 57317 Mm.2478 NM_020587 ENSMUSG00000028911 Srsf4 5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4 - 4|4 D2.3 serine/arginine-rich splicing factor 4 protein-coding 623138 Gm6397 EG623138 - 1|1 F heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 102631585 XM_017318976 LOC102631585 - - - zinc finger protein OZF-like protein-coding 108623 Iap5rb21 - - - intracisternal A-type particle, U5 region, SINE repeat b-21 other 67390 Mm.24886 NM_183263 ENSMUSG00000038046 Mrm3 4833420N02Rik|AI255153|HC90|Rnmtl1 - 11|11 B5 mitochondrial rRNA methyltransferase 3 protein-coding 100041033 Mm.359525 NR_038298 Gm20858 - - Y|Y A2 Sycp3 like Y-linked pseudogene pseudo 666894 Gm8352 EG666894 - 13|13 A3.3 REX4, RNA exonuclease 4 homolog pseudogene pseudo 171540 AF179933 12-14-90 - - DNA sequence AF179933 unknown 74057 Mm.159123 NR_046036 ENSMUSG00000097852 4933405D12Rik - - 3|3 G1 RIKEN cDNA 4933405D12 gene ncRNA 66722 Mm.440554 NM_025728 ENSMUSG00000053153 Spag16 4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29 - 1|1 C3 sperm associated antigen 16 protein-coding 105244803 LOC105244803 - - 5 G2 peptidyl-prolyl cis-trans isomerase G-like pseudo 627488 Mm.441727 NM_001270899 ENSMUSG00000097427 Gm6763 EG627488|Gm21293 - 10|10 D1 predicted gene 6763 protein-coding 77614 C030044M21Rik - - 7|7 RIKEN cDNA C030044M21 gene protein-coding 100416193 Gm17962 - - X|X C1 fumarate hydratase 1 pseudogene pseudo 110120530 LOC110120530 - - - VISTA enhancer mm1300 biological-region 66812 Mm.250508 NM_176831 ENSMUSG00000063849 Ppcdc 1810057I13Rik|8430432M10Rik - 9|9 B phosphopantothenoylcysteine decarboxylase protein-coding 229801 Mm.165810 NM_146140 ENSMUSG00000044528 Tram1l1 A830091N21Rik - 3|3 G1 translocation associated membrane protein 1-like 1 protein-coding 791411 Mm.442531 NR_152181 Gm13199 - - 2 A1|2 predicted gene 13199 ncRNA 100418242 Gm19095 - - 13|13 C1 proteasome (prosome, macropain) subunit, alpha type 4 pseudogene pseudo 61223 D1Mit218 - - 1 55.76 cM DNA segment, Chr 1, Massachusetts Institute of Technology 218 unknown 105246777 XR_878731 Gm42016 - - 5 F|5 predicted gene, 42016 ncRNA 62510 D11Mit101 - - 11 76.05 cM DNA segment, Chr 11, Massachusetts Institute of Technology 101 unknown 238555 Mm.129668 NM_175938 ENSMUSG00000053216 Btn2a2 Btn2|D030063K05 - 13|13 A3.1 butyrophilin, subfamily 2, member A2 protein-coding 70432 Mm.234587 NM_027425 ENSMUSG00000020070 Rufy2 2610111M19Rik|AI844453|Denn|LZ-FYVE|ZFYVE13 - 10 B4|10 32.51 cM RUN and FYVE domain-containing 2 protein-coding 102637900 XR_373333 Gm34596 - - 1 B|1 predicted gene, 34596 ncRNA 446210 Mm.378184 NM_001004437 ENSMUSG00000067103 AY702103 STDP2 - 17|17 C cDNA sequence AY702103 ncRNA 101101 Mm.482817 AI451035 - - - expressed sequence AI451035 unknown 111778 Iapls3-8 - - - intracisternal A particle, lymphocyte specific 3-8 other 102634880 XR_385003 Gm32357 - - 16 C3.3|16 predicted gene, 32357 ncRNA 665941 Gm7857 EG665941 - X|X E3 predicted gene 7857 pseudo 73280 Mm.158981 1700028N14Rik - - 11|11 E1 RIKEN cDNA 1700028N14 gene unknown 319986 A130042O14Rik - - 2|2 RIKEN cDNA A130042O14 gene protein-coding 66270 Mm.25311 NM_025459 ENSMUSG00000022270 Retreg1 1810015C04Rik|AU015349|Fam134b|Retreg1d - 15|15 B1 reticulophagy regulator 1 protein-coding 100035612 Manln16 - - 14 11.53 cM mandible length 16 unknown 20751 Mm.28393 NM_011467 ENSMUSG00000033735 Spr AA409688|Gm10328 - 6 C3|6 37.15 cM sepiapterin reductase protein-coding 629820 Mm.435540 NR_045157 ENSMUSG00000035983 Gm7008 EG629820 - 12|12 B1 predicted gene 7008 ncRNA 102638840 XR_383717 Gm35308 - - 14 E2.3|14 predicted gene, 35308 ncRNA 108498 Dgcr3 Dgcr3l - - DiGeorge syndrome critical region gene 3 other 546486 Fam119b EG546486|Gm16109 - 10|10 D3 family with sequence similarity 119, member B protein-coding 11767 Mm.290086 NM_007456 ENSMUSG00000003033 Ap1m1 AA408894|AP47|Adtm1A|Cltnm|mu1A - 8 B3.3|8 34.92 cM adaptor-related protein complex AP-1, mu subunit 1 protein-coding 230895 Mm.240310 NM_001033190 ENSMUSG00000020220 Vps13d - - 4|4 E1 vacuolar protein sorting 13D protein-coding 378777 L1Md-A3 L1Md-A13 - - L1 repeat, A subfamily, member 3 other 67474 Mm.271992 NM_023348 ENSMUSG00000022765 Snap29 1300018G05Rik|AI891940|AU020222|BB131856|Gs32 - 16|16 A3 synaptosomal-associated protein 29 protein-coding 68631 Mm.25539 NM_030004 ENSMUSG00000021947 Cryl1 1110025H08Rik|A230106J09Rik|C85932|gul3dh - 14 C3|14 30.1 cM crystallin, lambda 1 protein-coding 230815 Mm.18905 NM_207237 ENSMUSG00000037306 Man1c1 AI593348 - 4|4 D3 mannosidase, alpha, class 1C, member 1 protein-coding 108165 Klk1b28-ps Gk17|Gk28|Klk-ps6|Klk28|mGK-17|mGK-28 - 7 B3|7 kallikrein 1-related peptidase b28, pseudogene pseudo 112071 Bpq2 - - 1 67.71 cM blood pressure QTL 2 unknown 280121 Rplp1-ps1 EG280121|Gm5076 - X|X A7.2 ribosomal protein, large, P1, pseudogene 1 pseudo 665237 Rpsa-ps1 EG665237|Gm7549 - 1|1 H2.1 ribosomal protein SA, pseudogene 1 pseudo 71327 Mm.410784 5430402P08Rik - - 7|7 RIKEN cDNA 5430402P08 gene protein-coding 100416120 Gm17927 - - 2|2 C3 spermine synthase pseudogene pseudo 320791 A130071D04Rik - - 1|1 RIKEN cDNA A130071D04 gene protein-coding 106338 Mm.26321 NM_178925 ENSMUSG00000050312 Nsun3 6720484A09Rik|AU022521 - 16|16 C1.3 NOL1/NOP2/Sun domain family member 3 protein-coding 111413055 LOC111413055 - - - RIKEN cDNA D030056L22 gene pseudogene pseudo 105246614 XR_877975 Gm41881 - - 19 D3|19 predicted gene, 41881 ncRNA 11750 Mm.280231 NM_009674 ENSMUSG00000021814 Anxa7 AI265384|AI316497|Anx7|synexin - 14 A3|14 11.53 cM annexin A7 protein-coding 73129 Mm.417826 NR_045908 ENSMUSG00000114824 3110015C05Rik - - 13|13 D2.2 RIKEN cDNA 3110015C05 gene ncRNA 668112 Gm8980 EG668112 - 19 C1|19 predicted gene 8980 pseudo 102632070 Mm.388549 XR_001785037 Gm20465 - - 5 B1|5 17.53 cM predicted gene 20465 ncRNA 68452 Mm.152699 1110001M07Rik - - 18|18 RIKEN cDNA 1110001M07 gene protein-coding 56202 T(12;16)1Cje Ts108Cje|Ts1Cje - - reciprocal translocation, Chr 12 and 16, Epstein 1 other 102636681 Mm.442041 XR_382131 Gm11342 - - 13 A3.1|13 10.3 cM predicted gene 11342 ncRNA 12046 Mm.378887 NM_007535 ENSMUSG00000053820 Bcl2a1c A1-c - 9|9 F3 B cell leukemia/lymphoma 2 related protein A1c protein-coding 100502955 XM_017315654 Gm19470 - - 13 A5|13 25.6 cM predicted gene, 19470 protein-coding 666750 XM_011244806 ENSMUSG00000079380 Gm8271 EG666750 - 14|14 A1 predicted gene 8271 protein-coding 268783 Mm.54460 NM_172958 ENSMUSG00000039458 Mtmr12 3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682 - 15|15 A1 myotubularin related protein 12 protein-coding 108168494 LOC108168494 - - X D 40S ribosomal protein S6 pseudogene pseudo 116881 Pgia6 - - 10 9.75 cM proteoglycan induced arthritis 6 unknown 381823 Mm.296104 NM_001109914 ENSMUSG00000090698 Apold1 Gm1075 - 6|6 G1 apolipoprotein L domain containing 1 protein-coding 61862 D1Mit369 - - 1 63.51 cM DNA segment, Chr 1, Massachusetts Institute of Technology 369 unknown 102633730 XR_382468 Gm31485 - - 13 B1|13 predicted gene, 31485 ncRNA 53861 Mm.259036 NM_017381 ENSMUSG00000028180 Zranb2 AI227013|Zfp265|Zis|Znf265 - 3|3 H4 zinc finger, RAN-binding domain containing 2 protein-coding 102639984 XR_389408 Gm36167 - - 5 E4|5 predicted gene, 36167 ncRNA 103922 Fk - - - fleck unknown 102632995 XR_384150 Gm30929 - - 15 D1|15 predicted gene, 30929 ncRNA 75893 Mm.2968 NR_131017 ENSMUSG00000107563 4930587E11Rik 4930523E13Rik|Gm44188 - 6|6 D3 RIKEN cDNA 4930587E11 gene ncRNA 320026 Mm.131850 NR_015599 ENSMUSG00000109321 A330076H08Rik Mirh1 - 7|7 C RIKEN cDNA A330076H08 gene ncRNA 100416395 Gm11643 - - 11|11 E1 ribosomal protein S2 pseudogene pseudo 208194 Mm.101578 NM_172456 ENSMUSG00000042787 Exog AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb - 9|9 F3 endo/exonuclease (5'-3'), endonuclease G-like protein-coding 97165 Mm.276881 NM_008252 ENSMUSG00000054717 Hmgb2 C80539|HMG-2|Hmg2 - 8 B2|8 29.9 cM high mobility group box 2 protein-coding 62975 D15Mit243 - - 15 47.1 cM DNA Segment, Chr 15, Massachusetts Institute of Technology 243 unknown 17918 Mm.3645 NM_010864 ENSMUSG00000034593 Myo5a 9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr - 9 D|9 42.26 cM myosin VA protein-coding 106097 D15Mgi29 BB157820 - - DNA Segment, Chr 15, Mouse Genome Informatics 29 unknown 108167687 XR_001779312 LOC108167687 - - 9 F3 uncharacterized LOC108167687 ncRNA 544736 XM_001480631 ENSMUSG00000112611 Glipr1l3 - - 10|10 D2 GLI pathogenesis-related 1 like 3 protein-coding 97227 C77949 - - - expressed sequence C77949 protein-coding 102641004 LOC102641004 - - - non-histone chromosomal protein HMG-14-like pseudo 100417194 Gm15158 - - X|X F3 crumbs homolog 1 pseudogene pseudo 100416269 Gm18011 - - 6|6 B2.3 ribosomal protein S2 pseudogene pseudo 105245500 XR_873399 Gm40948 - - 13 A5|13 predicted gene, 40948 ncRNA 105245270 XR_871975 Gm40748 - - 10 C3|10 predicted gene, 40748 ncRNA 102638623 BB365896 - - 6|6 27.98 cM expressed sequence BB365896 ncRNA 102636690 XM_017313034 Gm33691 - - 8 A1.1|8 predicted gene, 33691 protein-coding 109451 Hpic2 - - 1 81.08 cM haloperidol induced catalepsy 2 unknown 102643089 LOC102643089 - - - complement C4-B protein-coding 56363 Mm.245154 NM_019790 ENSMUSG00000026109 Tmeff2 4832418D20Rik|7630402F16Rik|TR-2 - 1|1 C1.1 transmembrane protein with EGF-like and two follistatin-like domains 2 protein-coding 79195 AF313042 Msuit1 - - cDNA sequence AF313042 protein-coding 674011 LOC674011 - - - vomeronasal type-2 receptor 116-like pseudo 668502 Gm9208 EG668502 - X|X D predicted gene 9208 pseudo 19520 Rb(3.12)4Mpl Rb4Mpl - - Robertsonian translocation, Chr 3 and 12, Montpellier 4 other 104377 Iac - - - iris anomaly with cataract unknown 258284 Mm.377414 NM_146287 ENSMUSG00000062629 Olfr114 MOR218-10 - 17|17 B1 olfactory receptor 114 protein-coding 21178 T(4;17)2Lws T2Lws - - reciprocal translocation, Chr 4 and 17, Lewis 2 other 71691 Mm.275673 NM_001007569 ENSMUSG00000041141 Pnmal1 0710005I19Rik|4930488B01Rik|AI844408|Pnma8a|R74771 - 7|7 A2 PNMA-like 1 protein-coding 16653 Mm.383182 NM_021284 ENSMUSG00000030265 Kras AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras - 6 G3|6 77.37 cM Kirsten rat sarcoma viral oncogene homolog protein-coding 108167799 XR_001779738 Gm46216 - - 10 A3|10 predicted gene, 46216 ncRNA 105243667 XR_878073 Gm39498 - - X A1.2|X predicted gene, 39498 ncRNA 102465889 NR_106174 ENSMUSG00000099245 Mir8098 Gm27462|mmu-mir-8098 - 14|14 D1 microRNA 8098 ncRNA 668984 Gm14513 EG668984 - X|X A1.1 predicted gene 14513 protein-coding 108167442 XR_001778190 Gm45991 - - 7 D3|7 predicted gene, 45991 ncRNA 360122 D17Brg119 - - - DNA segment, Chr 17, David E. Bergstrom 119 unknown 102632742 XM_006540523 Scgb2b4-ps Abpbg4-ps - 7 B1|7 secretoglobin, family 2B, member 4, pseudogene protein-coding 105573 Mm.443881 AI987986 - - - expressed sequence AI987986 unknown 108408 Xmmv12 Env-12|Xmmv-12 - - xenotropic-MCF leukemia virus 12 other 52511 D18Ertd201e - - 18 11.53 cM DNA segment, Chr 18, ERATO Doi 201, expressed unknown 19099 Mm.2720 NM_011162 ENSMUSG00000027223 Mapk8ip1 IB1|JIP-1|Jip1|Prkm8ip|Skip|mjip-2a - 2|2 E1 mitogen-activated protein kinase 8 interacting protein 1 protein-coding 102641408 XR_873937 Gm38557 - - 13 D2.1|13 predicted gene, 38557 ncRNA 233437 Mm.424396 NM_001033878 ENSMUSG00000094950 Vmn2r66 F830104D24Rik - 7|7 D3 vomeronasal 2, receptor 66 protein-coding 102636974 XR_391468 Gm33898 - - 7 B4|7 predicted gene, 33898 ncRNA 692144 Igkv13-82 - - 6|6 C1 immunoglobulin kappa chain variable 13-82 pseudo 109815 Mm.482127 NM_024439 ENSMUSG00000075701 Selenos 1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp - 7 C|7 35.49 cM selenoprotein S protein-coding 77777 Mm.442442 NM_029975 ENSMUSG00000079685 Ulbp1 A430108B07Rik|MULT1 - 10|10 A1 UL16 binding protein 1 protein-coding 100126084 Mtbcq5 - - - multiple trait body composition QTL 5 unknown 19230 Mm.490250 NM_008971 ENSMUSG00000022451 Twf1 A6|Ptk9|twinfilin - 15|15 E3 twinfilin actin binding protein 1 protein-coding 114740 Iba4 - - 19 20.99 cM induction of brown adipocytes 4 unknown 245828 Mm.28073 NM_001024206 ENSMUSG00000049299 Trappc1 BET5|D11Ertd172e|MUM2 - 11 B3|11 42.51 cM trafficking protein particle complex 1 protein-coding 319865 Mm.373807 NM_177023 E130114P18Rik - - 4|4 C6 RIKEN cDNA E130114P18 gene ncRNA 668720 Gm9319 EG668720 - 17|17 E1.3 heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene pseudo 240539 Gm336 - - 19|19 A ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 pseudogene pseudo 14368 Mm.4769 NM_008056 ENSMUSG00000022297 Fzd6 Fz6 - 15 B3.1|15 15.22 cM frizzled class receptor 6 protein-coding 97137 C77484 - - - expressed sequence C77484 unknown 100417527 Gm18666 - - 1|1 D D-2-hydroxyglutarate dehydrogenase pseudogene pseudo 77821 A930031G03Rik - - 15|15 RIKEN cDNA A930031G03 gene protein-coding 100041703 Gm13342 - - 2|2 A3 predicted gene 13342 protein-coding 102639232 Mm.318116 Gm12688 - - 4|4 45.71 cM predicted gene 12688 ncRNA 19306 py - - - polydactyly unknown 22384 Mm.27955 NM_033561 ENSMUSG00000040731 Eif4h AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H - 5 G2|5 74.71 cM eukaryotic translation initiation factor 4H protein-coding 105243088 XR_881000 Gm39114 - - 7 F5|7 predicted gene, 39114 ncRNA 102634575 Mm.416980 XR_387957 ENSMUSG00000110633 Gm32122 Gm45896 - 8 D1|8 predicted gene, 32122 ncRNA 53288 03.MMHAP34FRA.seq - - - DNA segment, 03.MMHAP34FRA.seq unknown 66732 Mm.75060 NM_025733 ENSMUSG00000034689 4921530L21Rik - - 14|14 E2.1 RIKEN cDNA 4921530L21 gene protein-coding 319674 C130062D02Rik - - 4|4 RIKEN cDNA C130062D02 gene protein-coding 11451 Mm.4776 NM_007391 ENSMUSG00000032110 Acrv1 Msa63|SP-10 - 9 A4|9 20.67 cM acrosomal vesicle protein 1 protein-coding 105244433 XR_867194 LOC105244433 - - 3 B uncharacterized LOC105244433 ncRNA 623115 Gm11488 - - 4|4 C3 heterogeneous nuclear ribonucleoprotein D-like pseudogene pseudo 19558 Rb(4.6)2Bnr Rb2Bnr - - Robertsonian translocation, Chr 4 and 6, Universitat Bonn/Rhein 2 other 277753 Mm.276106 NM_177406 ENSMUSG00000066071 Cyp4a12a BC025936|Cyp4a12 - 4 D1|4 52.91 cM cytochrome P450, family 4, subfamily a, polypeptide 12a protein-coding 107947 Defa-rs6 CRS4C-1c|Defcr-rs6 - - defensin, alpha, related sequence 6 protein-coding 15560 Mm.439670 NM_008312 ENSMUSG00000041380 Htr2c 5-HT2C|5-HT2cR|5-HTR2C|5HT1c|Htr1c|SR1 - X F2|X 68.46 cM 5-hydroxytryptamine (serotonin) receptor 2C protein-coding 101055751 Mm.398801 LOC101055751 - - - uncharacterized LOC101055751 protein-coding 12939 Mm.308500 NM_009957 ENSMUSG00000104318 Pcdha7 Cnr4|Crnr4 - 18|18 B2-B3 protocadherin alpha 7 protein-coding 109427 Skts3 - - 5 20.61 cM skin tumor susceptibility 3 unknown 319155 Mm.261662 NM_178208 ENSMUSG00000060678 Hist1h4c - - 13|13 A3.1 histone cluster 1, H4c protein-coding 12444 Mm.333406 NM_009829 ENSMUSG00000000184 Ccnd2 2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2 - 6 F3|6 61.92 cM cyclin D2 protein-coding 258415 Mm.157684 NM_146423 ENSMUSG00000096167 Olfr887 C77344|MOR162-5 - 9|9 A4 olfactory receptor 887 protein-coding 72522 Mm.187326 NM_175183 ENSMUSG00000048997 Atxn7l2 2610528J18Rik - 3|3 F2.3 ataxin 7-like 2 protein-coding 623726 NR_131142 A430085M09Rik EG623726 - 4|4 C3 RIKEN cDNA A430085M09 gene ncRNA 552907 LOC552907 - - - uncharacterized LOC552907 unknown 387179 NR_029570 ENSMUSG00000065596 Mir184 Mirn184|mir-184|mmu-mir-184 - 9 E3.1|9 microRNA 184 ncRNA 210710 Mm.267056 NM_181584 ENSMUSG00000032750 Gab3 5930433H21Rik - X|X A7.3 growth factor receptor bound protein 2-associated protein 3 protein-coding 654355 Gm7328 EG654355 - 8|8 B2 glutamate receptor, ionotropic, NMDA2A (epsilon 1) pseudogene pseudo 102465773 NR_106132 ENSMUSG00000098751 Mir7672 Gm27314|mmu-mir-7672 - 14|14 A3 microRNA 7672 ncRNA 433779 Mm.389596 NM_001034101 ENSMUSG00000070619 Gm13119 - - 4|4 E1 predicted gene 13119 protein-coding 101055813 Gm29726 - - 1 H6|1 predicted gene, 29726 pseudo 17807 Mtv43 Mtv-43 - - mammary tumor virus locus 43 other 100035213 Imrfq2 - - - immune response to Factor IX QTL 2 unknown 105246077 XR_875934 Gm41425 - - 16 A2|16 predicted gene, 41425 ncRNA 624925 Gm6538 EG624925 - 10|10 D3 kelch domain containing 10 pseudogene pseudo 433515 Gm14323 - - 2|2 H4 ribosomal protein S8 pseudogene pseudo 100861779 Gm21209 - - Y|Y predicted gene, 21209 protein-coding 387236 NR_029822 ENSMUSG00000093354 Mir125b-1 Mirn125b|Mirn125b-1|mir-125b-1 - 9|9 A5.1 microRNA 125b-1 ncRNA 58542 D13Die41 - - 13 52.96 cM DNA segment, Chr 13, Dietrich 41 unknown 12813 Mm.443177 NM_009925 ENSMUSG00000039462 Col10a1 Col10|Col10a-1 - 10 B1|10 18.85 cM collagen, type X, alpha 1 protein-coding 11486 Mm.388 NM_007398 ENSMUSG00000017697 Ada - - 2 84.44 cM|2 H3 adenosine deaminase protein-coding 100862124 Gm15026 - - X F1|X 59.1 cM predicted gene 15026 pseudo 382077 Mm.335193 NM_029212 ENSMUSG00000037716 Ccdc33 4930535E21Rik|Gm1117|Tzip1 - 9|9 B coiled-coil domain containing 33 protein-coding 105245342 XM_017314882 Gm40814 - - 11 A1|11 predicted gene, 40814 protein-coding 102635624 XR_383459 Gm32912 - - 14 C3|14 predicted gene, 32912 ncRNA 108167316 XR_880035 LOC108167316 - - 11 B5 uncharacterized LOC108167316 ncRNA 100503225 Gm19598 - - 17|17 27.7 cM thioredoxin-like protein 4A-like pseudo 110714 Mycnos Ncym1 - - Mycn, opposite strand protein-coding 100503272 Mm.486964 NR_126067 ENSMUSG00000085175 Gm11423 - - 11 C|11 50.23 cM predicted gene 11423 ncRNA 102634138 XR_381213 Gm31794 - - 12 A1.1|12 predicted gene, 31794 ncRNA 74601 Mm.410840 NR_045459 ENSMUSG00000092171 4833427F10Rik - - 17|17 B1 RIKEN cDNA 4833427F10 gene ncRNA 320860 Mm.460607 B130021B11Rik AI663978 - 15|15 A1 RIKEN cDNA B130021B11 gene protein-coding 667292 Mm.480254 NM_001166746 ENSMUSG00000095768 Vmn1r111 EG667292|Gm8559 - 7|7 A3 vomeronasal 1 receptor 111 protein-coding 17096 Mm.317331 NM_010747 ENSMUSG00000042228 Lyn AA407514|Hck-2|p53Lyn|p56Lyn - 4 A1|4 2.05 cM LYN proto-oncogene, Src family tyrosine kinase protein-coding 66779 Mm.387525 NR_015575 4933432I09Rik - - 16|16 A3 RIKEN cDNA 4933432I09 gene ncRNA 100417178 Gm18438 - - X|X C1 melanoma antigen, family B, 4 pseudogene pseudo 62308 D1Mit221 - - 1 89.46 cM DNA segment, Chr 1, Massachusetts Institute of Technology 221 unknown 213464 Mm.132868 NM_172517 ENSMUSG00000026439 Rbbp5 4933411J24Rik|C330016J05 - 1|1 E4 retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit protein-coding 110463 Tcra-VBMB - - - T cell receptor alpha, variable BMB other 226026 Mm.23267 NM_153808 ENSMUSG00000024943 Smc5 MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5 - 19|19 B structural maintenance of chromosomes 5 protein-coding 16323 Mm.8042 NM_008380 ENSMUSG00000041324 Inhba - - 13 A1|13 5.85 cM inhibin beta-A protein-coding 674940 Gm13559 - - 2|2 C1.1 ribosomal protein S2 pseudogene pseudo 232969 Mm.181332 NM_146183 ENSMUSG00000064264 Zfp428 2410005H09Rik|AV271806|AW047854|Znf428 - 7|7 A3 zinc finger protein 428 protein-coding 319664 Mm.448272 E230012J19Rik - - 4|4 RIKEN cDNA E230012J19 gene protein-coding 105246122 XR_876118 Gm26800 - - 16 C1.1|16 predicted gene, 26800 ncRNA 383436 Gm5244 EG383436 - 19|19 A ribosomal protein, large, P1 pseudogene pseudo 72148 Mm.5727 NM_173744 ENSMUSG00000050052 Tdrp 2610019F03Rik - 8|8 A1.1 testis development related protein protein-coding 102635312 XR_375285 Gm32685 - - 2 H3|2 predicted gene, 32685 ncRNA 75613 Mm.157778 NM_029365 ENSMUSG00000002968 Med25 2610034E13Rik|2610529E18Rik|ESTM2 - 7 B3|7 28.95 cM mediator complex subunit 25 protein-coding 105245738 Gm41137 - - 14|14 predicted gene, 41137 ncRNA 109279941 LOC109279941 Mm329 - - VISTA enhancer mm329 biological-region 100043497 Mm.440772 NM_001253910 ENSMUSG00000089694 Nat8f7 Gm4477 - 6 C3|6 N-acetyltransferase 8 (GCN5-related) family member 7 protein-coding 21830 Mm.89197 NM_011583 ENSMUSG00000020317 Theg - - 10|10 C1 testicular haploid expressed gene protein-coding 619780 Gm6100 EG619780 - 8|8 A4 fatty acid binding protein 5, epidermal pseudogene pseudo 100041546 Mm.482110 NM_001099217 ENSMUSG00000022584 Ly6c2 Ly-6C.2|Ly-6C2 - 15|15 D3 lymphocyte antigen 6 complex, locus C2 protein-coding 668729 Gm9322 EG668729 - 7 B3|7 MAS-related GPR, member X1 pseudogene pseudo 102634672 XM_006497575 Gm32204 - - 2 A1|2 predicted gene, 32204 protein-coding 116451 Bhr6 - - 7 23.9 cM bronchial hyperresponsiveness 6 unknown 227700 Mm.33343 NM_139302 ENSMUSG00000026860 Sh3glb2 SPAS-1 - 2|2 B SH3-domain GRB2-like endophilin B2 protein-coding 100417701 Gm18770 - - 16|16 B1 zinc finger, CCHC domain containing 6 pseudogene pseudo 102632686 XR_870403 Gm16351 - - 8 B1.1|8 25.53 cM predicted gene 16351 ncRNA 100862015 NM_001277531 ENSMUSG00000096700 Gm11236 - - 4 C3|4 36.06 cM predicted gene 11236 protein-coding 22781 Mm.358648 NM_011772 ENSMUSG00000002578 Ikzf4 A630026H08Rik|Eos|Zfpn1a4|Znfn1a4 - 10|10 D3 IKAROS family zinc finger 4 protein-coding 56737 Mm.22218 NM_019998 ENSMUSG00000039740 Alg2 1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081 - 4|4 B1 asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase) protein-coding 244864 Mm.335152 NM_001033534 ENSMUSG00000060594 Layn E030012M19Rik|Gm511 - 9|9 A5.3 layilin protein-coding 102637039 Mm.50107 NR_155537 Gm33948 - - 18 A2|18 predicted gene, 33948 ncRNA 75921 Mm.416953 4930578M07Rik - - 8|8 RIKEN cDNA 4930578M07 gene protein-coding 100039198 Gm14400 - - 2|2 H4 predicted gene 14400 pseudo 407790 Mm.336856 NM_001098789 ENSMUSG00000040280 Ndufa4l2 BC064011 - 10|10 D3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2 protein-coding 244144 Mm.297541 NM_001177412 ENSMUSG00000035713 Usp35 Gm1088|Gm493 - 7|7 E1 ubiquitin specific peptidase 35 protein-coding 258362 Mm.377458 NM_146365 ENSMUSG00000044213 Olfr1094 MOR179-7 - 2|2 D olfactory receptor 1094 protein-coding 258342 Mm.223034 NM_146345 ENSMUSG00000051156 Olfr1491 MOR266-8 - 19|19 A olfactory receptor 1491 protein-coding 103752591 Gm38668 - - 12 A1.1|12 mortality factor 4 like 1 pseudogene pseudo 320949 Mm.136116 NM_177297 D830039M14Rik - - 10|10 B4 RIKEN cDNA D830039M14 gene unknown 108600 Iap3ra13 - - - intracisternal A-type particle, U3 region, SINE repeat a-13 other 360118 D17Jcs121 - - - DNA segment, Chr 17, John C. Schimenti 121 unknown 19707 Mm.4479 NM_009048 ENSMUSG00000019854 Reps1 BB161292 - 10|10 A3 RalBP1 associated Eps domain containing protein protein-coding 100041351 Mm.441672 NM_001101631 ENSMUSG00000111915 Gm3285 - - 10 C1|10 predicted gene 3285 protein-coding 404337 Mm.278373 NM_207574 ENSMUSG00000107417 Olfr1383 MOR256-56 - 11|11 B1.2 olfactory receptor 1383 protein-coding 117012 Cgnz1 - - 1 76.73 cM chronic glomerulonephritis in NZM 1 unknown 12050 Mm.6967 NM_007537 ENSMUSG00000089682 Bcl2l2 AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98 - 14 C2|14 27.98 cM BCL2-like 2 protein-coding 117005 Mm.196679 NM_054091 ENSMUSG00000075142 Olfr74 MOR174-4|mOR-EV - 2|2 D olfactory receptor 74 protein-coding 102637051 Gm29299 - - Y|Y predicted gene 29299 protein-coding 100041521 Gm3386 - - 14 B|14 cytochrome c oxidase, subunit VIIc pseudogene pseudo 112087 Mop2 - - 10 3.04 cM morphine preference 2 unknown 100503400 Ckb-ps1 Gm19674 - 17|17 C creatine kinase, brain, pseudogene 1 pseudo 100035592 Parms1 - - - patched associated RMS 1 unknown 11501 Mm.15969 NM_007403 ENSMUSG00000025473 Adam8 ADAM 8|CD156|CD156a|E430039A18Rik|MS2 - 7|7 F4 a disintegrin and metallopeptidase domain 8 protein-coding 81013 Mm.160378 NM_030738 ENSMUSG00000066850 Vmn1r65 V1rd6|V3R6 - 7|7 A1 vomeronasal 1 receptor 65 protein-coding 102642358 XR_877268 Gm38606 - - 18 B1|18 predicted gene, 38606 ncRNA 102467476 n-TNgtt6 n-Tn6 - 1 H3|1 nuclear encoded tRNA asparagine 6 (anticodon GTT) tRNA 667181 Gm8498 EG667181 - Y|Y A1 predicted gene 8498 pseudo 110015 Tsp8 - - - tumor suppressor region 8 protein-coding 60743 D1Mit76 - - 1 33.31 cM DNA segment, Chr 1, Massachusetts Institute of Technology 76 unknown 16891 Mm.299647 NM_010720 ENSMUSG00000053846 Lipg 3110013K01Rik|EL|lipase|mEDL - 18|18 E2 lipase, endothelial protein-coding 66274 Mm.258932 NM_001076681 ENSMUSG00000072640 Lyrm9 1810012P15Rik - 11|11 B5 LYR motif containing 9 protein-coding 666501 Gm8137 EG666501 - 10|10 C1 predicted gene 8137 pseudo 19482 Rb(12.13)3Ct Rb3Ct - - Robertsonian translocation, Chr 12 and 13, Cattanach 3 other 75777 Mm.48812 NM_029430 ENSMUSG00000022249 Ttc23l 4930401A09Rik - 15|15 A1 tetratricopeptide repeat domain 23-like protein-coding 100417965 Gm18922 - - 7|7 D3 small nuclear ribonucleoprotein 48 (U11/U12) pseudogene pseudo 435329 Gm5660 EG435329 - 12|12 F2 cell division cycle 5-like pseudogene pseudo 71667 Mm.258508 NM_027854 ENSMUSG00000053094 Tmem248 0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik - 5|5 G1.3 transmembrane protein 248 protein-coding 57435 Mm.12966 NM_020568 ENSMUSG00000002831 Plin4 S3-12|mKIAA1881 - 17|17 D perilipin 4 protein-coding 278672 Mm.428840 NM_183389 ENSMUSG00000048502 Duxbl1 1110051B16Rik|Duxbl|Duxl - 14|14 A3 double homeobox B-like 1 protein-coding 433238 Gm5518 EG433238 - 19 C1|19 predicted gene 5518 pseudo 100504220 Gm20118 - - 1|1 25.91 cM predicted gene, 20118 pseudo 71908 Mm.37817 NM_027998 ENSMUSG00000055976 Cldn23 2310014B08Rik - 8|8 A4 claudin 23 protein-coding 72867 2900036C06Rik - - 14|14 RIKEN cDNA 2900036C06 gene protein-coding 105244686 Gm40248 - - 4|4 predicted gene, 40248 ncRNA 258094 Mm.377348 NM_001011829 ENSMUSG00000109376 Olfr761 MOR218-12|MOR218-5P|MOR218-6P|Olfr1552-ps1 - 17|17 B1 olfactory receptor 761 protein-coding 108169104 Gm46936 - - 5 G3|5 predicted gene, 46936 pseudo 102638239 XR_383313 Gm34848 - - 14 A3|14 predicted gene, 34848 ncRNA 102632610 Gm16254 - - 10|10 2.24 cM predicted gene 16254 pseudo 53956 Mm.384097 AA855340 - - - EST AA855340 protein-coding 57443 Mm.143768 NM_020593 ENSMUSG00000027180 Fbxo3 1200002G09Rik|1700026K02Rik|AI046358|Fba - 2|2 E2 F-box protein 3 protein-coding 72555 Mm.310139 NM_028277 ENSMUSG00000022494 Shisa9 2700045P11Rik|Ckamp44 - 16 A1|16 shisa family member 9 protein-coding 237988 Mm.102872 NM_001080929 ENSMUSG00000050910 Cdr2l D030068L24Rik|Gm21 - 11|11 E2 cerebellar degeneration-related protein 2-like protein-coding 108863619 LOC108863619 - - 5 F Gfi1 +5.8 kb enhancer biological-region 634662 Gm7142 EG634662 - 12 F2|12 high mobility group box 2 pseudogene pseudo 102637519 XR_387446 Gm34306 - - 1 E4|1 predicted gene, 34306 ncRNA 99463 Mm.393385 BB182297 - - - expressed sequence BB182297 unknown 171469 Mm.272290 NM_134438 ENSMUSG00000026424 Gpr37l1 AW047233|CAG-18|D0Kist8 - 1|1 E4 G protein-coupled receptor 37-like 1 protein-coding 102640692 Gm21919 - - Y|Y predicted gene, 21919 protein-coding 102631735 XR_376219 A630039O03Rik - - 3|3 H3 RIKEN cDNA A630039O03 gene ncRNA 100040320 Gm2710 - - 1 H3|1 predicted gene 2710 unknown 102640957 XR_383610 1700105F02Rik - - 14|14 D3 RIKEN cDNA 1700105F02 gene ncRNA 77875 Mm.245027 NR_033585 Cyp4f41-ps 6030422M01Rik - 17|17 B1 cytochrome P450, family 4, subfamily f, polypeptide 41 pseudogene pseudo 100124474 NR_030565 ENSMUSG00000076994 Mir466b-3 Mirn466b-3 - 2 A1|2 microRNA 466b-3 ncRNA 108168501 Gm46697 - - Y A1|Y predicted gene, 46697 pseudo 100416778 Gm18245 - - 12|12 predicted gene, 18245 pseudo 75037 Mm.387976 NR_153101 4930500G05Rik - - X|X A1.1 RIKEN cDNA 4930500G05 gene ncRNA 23894 Mm.272533 NM_022011 ENSMUSG00000021639 Gtf2h2 44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44 - 13 D1|13 53.21 cM general transcription factor II H, polypeptide 2 protein-coding 77996 Mm.215255 NM_030021 ENSMUSG00000026870 Cutal D730039F16Rik - 2|2 B cutA divalent cation tolerance homolog-like protein-coding 100418116 Gm19009 - - 13|13 A5 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 100036378 Chlq14 - - - circulating hormone level QTL 14 unknown 105246530 XR_877715 Gm41805 - - 19 A|19 predicted gene, 41805 ncRNA 100035604 W3q5 - - - weight 3 weeks QTL 5 unknown 111729 Emv15 Emv-15 - - endogenous ecotropic MuLV 15, A-associated other 19341 Mm.9221 NM_009003 ENSMUSG00000019478 Rab4a AI848268|Rab4 - 8 E2|8 72.19 cM RAB4A, member RAS oncogene family protein-coding 21102 T(16;17)7Gso T7Gso - - reciprocal translocation, Chr 16 and 17, Generoso 7 other 14352 NM_010245 Fv4 Akvr-1|Fv-4 - - Friend virus susceptibility 4 other 61596 D9Mit277 - - 9 59.67 cM DNA segment, Chr 9, Massachusetts Institute of Technology 277 unknown 320253 Mm.312623 NM_177115 ENSMUSG00000032656 March3 6330411I15Rik|A530081L18Rik|AI843639|MARCH-III - 18 D3|18 membrane-associated ring finger (C3HC4) 3 protein-coding 100503965 Mm.436902 NR_152253 Gm12167 - - 11 B1.1|11 27.77 cM predicted gene 12167 ncRNA 108168228 Gm46506 - - 15 B1|15 40S ribosomal protein S15a pseudogene pseudo 21667 Mm.5090 NM_011562 ENSMUSG00000032494 Tdgf1 CR1|cripto - 9 F2|9 60.79 cM teratocarcinoma-derived growth factor 1 protein-coding 102467344 n-TKctt9 n-Tk9 - 3 A1|3 nuclear encoded tRNA lysine 9 (anticodon CTT) tRNA 75410 Mm.168688 NM_029274 ENSMUSG00000006307 Kmt2b 2610014H22Rik|Mll2|Wbp7|mKIAA0304 - 7|7 B1 lysine (K)-specific methyltransferase 2B protein-coding 102637080 XR_380853 Gm33982 - - 10 D2|10 predicted gene, 33982 ncRNA 22131 TTg(3;10)1Tex - - - reciprocal translocation, transgene elicited, Chr 3 and 10, University of Texas 1 other 100043719 Gm9770 - - 10 D3|10 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 pseudogene pseudo 17133 Mm.86646 NM_010755 ENSMUSG00000042622 Maff - - 15 E1|15 37.7 cM v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian) protein-coding 320592 D130076A03Rik - - 14|14 B RIKEN cDNA D130076A03 gene protein-coding 102635484 XR_387300 Gm32810 - - 1 E2.1|1 predicted gene, 32810 ncRNA 56508 Mm.196153 NM_019688 ENSMUSG00000049044 Rapgef4 1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040 - 2|2 C3 Rap guanine nucleotide exchange factor (GEF) 4 protein-coding 230162 Mm.186994 NM_145547 ENSMUSG00000039634 Zfp189 BB131811|C430015I23Rik - 4|4 B1 zinc finger protein 189 protein-coding 211986 Mm.34035 NM_172049 ENSMUSG00000043061 Tmem18 BC024093 - 12|12 A2 transmembrane protein 18 protein-coding 100503793 LOC100503793 - - - uncharacterized LOC100503793 unknown 100036034 Gf3 - - - gonadal fat pad weight 3 unknown 102631771 NR_126546 ENSMUSG00000101492 Gm29089 - - Ypter|Y predicted gene 29089 ncRNA 378710 Musd2 pro - - Mus Musculus type D-like endogenous retrovirus 2 other 14605 Mm.22216 NM_010286 ENSMUSG00000031431 Tsc22d3 DIP|Dsip1|Gilz|TSC-22R|Tilz3 - X|X F1 TSC22 domain family, member 3 protein-coding 108168856 LOC108168856 - - 3 G1 60S ribosomal protein L15 pseudogene pseudo 106973 AU015741 - - - expressed sequence AU015741 unknown 75043 Mm.410815 NR_110449 ENSMUSG00000086703 4930507D10Rik - - 11|11 B5 RIKEN cDNA 4930507D10 gene ncRNA 100035716 Ba6 - - - bone area 6 unknown 268534 Mm.279765 NM_172951 ENSMUSG00000020672 Sntg2 2210008K22Rik|9530013L23|BB121248|G2syn|Syn5 - 12|12 A2 syntrophin, gamma 2 protein-coding 98732 Mm.275841 NM_172649 ENSMUSG00000039318 Rab3gap2 1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839 - 1|1 H5 RAB3 GTPase activating protein subunit 2 protein-coding 78117 4930447E19Rik - - 5|5 RIKEN cDNA 4930447E19 gene protein-coding 103768 Mm.142348 NM_134028 ENSMUSG00000045007 Tubg2 AI504772|Tubgl - 11|11 D tubulin, gamma 2 protein-coding 68180 Mm.193212 NM_026601 ENSMUSG00000006395 Hyi 2700033B16Rik|6430559E15Rik|HT036 - 4|4 D2.1 hydroxypyruvate isomerase (putative) protein-coding 12491 Mm.18628 NM_007643 ENSMUSG00000002944 Cd36 FAT|GPIV|Scarb3 - 5 A3|5 8.11 cM CD36 molecule protein-coding 100041687 Mm.457982 NM_001134676 ENSMUSG00000078687 Mup8 Gm12809|Mup5 - 4 B3|4 major urinary protein 8 protein-coding 574403 Mm.444796 NM_001025382 ENSMUSG00000069911 Fam196b EG574403|Gm6041 - 11 A4|11 family with sequence similarity 196, member B protein-coding 67516 Mm.390712 NM_026214 ENSMUSG00000046523 Kctd4 2210017A09Rik|AU017169 - 14|14 D3 potassium channel tetramerisation domain containing 4 protein-coding 102637567 XR_390583 Gm34343 - - 4 B3|4 predicted gene, 34343 ncRNA 320713 Mm.208868 NM_177239 ENSMUSG00000062627 Mysm1 C130067A03Rik|C530050H10Rik - 4|4 C5 myb-like, SWIRM and MPN domains 1 protein-coding 71341 5430434N17Rik - - 16|16 RIKEN cDNA 5430434N17 gene protein-coding 105245303 XR_872101 Gm40778 - - 10 D2|10 predicted gene, 40778 ncRNA 64929 Mm.244003 NM_022886 ENSMUSG00000022123 Scel 9230114I02Rik - 14|14 E2.3 sciellin protein-coding 214112 Mm.225253 NM_172524 ENSMUSG00000020411 Nipal4 9530066K23Rik - 11|11 B1.1 NIPA-like domain containing 4 protein-coding 78481 Mm.82809 1700123J03Rik - - 12|12 RIKEN cDNA 1700123J03 gene protein-coding 105245851 XR_874938 Gm41240 - - 14 E2.3|14 predicted gene, 41240 ncRNA 100503019 Mm.482658 NR_045284 ENSMUSG00000066477 Gm16551 - - 9 D|9 41.91 cM predicted gene 16551 ncRNA 71244 Mm.410787 NR_046208 ENSMUSG00000108924 4933436H12Rik - - 7|7 C RIKEN cDNA 4933436H12 gene ncRNA 100504652 XM_003084588 Gm12880 - - 4 D2.2|4 56.89 cM predicted gene 12880 protein-coding 109279950 LOC109279950 Mm405 - - VISTA enhancer mm405 biological-region 258448 Mm.377508 NM_146456 ENSMUSG00000096477 Olfr92 MOR256-29|bM573K1.4 - 17|17 B1 olfactory receptor 92 protein-coding 102637656 Gm34411 - - 5|5 predicted gene, 34411 ncRNA 76960 Mm.240850 NM_029815 ENSMUSG00000013523 Bcas1 2210416M21Rik|9030223A09Rik|AI841227|NABC1 - 2|2 H3 breast carcinoma amplified sequence 1 protein-coding 78396 Mm.277705 2810028B13Rik - - 18|18 RIKEN cDNA 2810028B13 gene protein-coding 66916 Mm.29683 NM_025843 ENSMUSG00000033938 Ndufb7 1110002H15Rik - 8|8 C2 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7 protein-coding 68423 Mm.23642 NM_026720 ENSMUSG00000005986 Ankrd13d 0710001P18Rik|AI430801 - 19|19 A ankyrin repeat domain 13 family, member D protein-coding 623346 Gm6419 EG623346 - 10|10 B5.3 predicted gene 6419 pseudo 100038570 Mm.390349 NM_001163318 ENSMUSG00000075410 Prcd Gm11744 - 11 E2|11 photoreceptor disc component protein-coding 97114 Mm.358797 NM_054045 ENSMUSG00000081058 Hist2h3c2 H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461 - 3|3 F2.1 histone cluster 2, H3c2 protein-coding 102632639 XR_383630 Gm30662 - - 14 D3|14 predicted gene, 30662 ncRNA 54004 Mm.10763 NM_017398 ENSMUSG00000034480 Diaph2 Dia3|Diap2|Drf2|E430022I22Rik - X|X E3 diaphanous related formin 2 protein-coding 75836 Mm.410807 NR_131031 ENSMUSG00000085664 Atxn7l1os2 4930556N08Rik - 12|12 A3 ataxin 7-like 1, opposite strand 2 ncRNA 77972 A930037G07Rik - - 5|5 RIKEN cDNA A930037G07 gene protein-coding 56009 Mm.389208 NM_019484 ENSMUSG00000060244 Alyref2 C130042O11Rik|REF2|Refbp2 - 1|1 H3 Aly/REF export factor 2 protein-coding 100036063 Ffal1 - - 17 51.8 cM free fatty acid level 1 unknown 102641483 XR_870343 LOC102641483 - - 8 A4 uncharacterized LOC102641483 ncRNA 61513 D8Mit127 - - 8 27.18 cM DNA segment, Chr 8, Massachusetts Institute of Technology 127 unknown 676478 LOC676478 - - - Ig heavy chain V region other 229841 Mm.161470 NM_173762 ENSMUSG00000045328 Cenpe 312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10 - 3 G3|3 62.55 cM centromere protein E protein-coding 105246816 XR_879157 Gm42040 - - 8 D3|8 predicted gene, 42040 ncRNA 665970 Gm7870 EG665970 - 9|9 D high mobility group box 1-like pseudogene pseudo 102638460 Mm.338774 XR_388595 ENSMUSG00000087172 Gm12153 - - 11 B1.1|11 25.87 cM predicted gene 12153 ncRNA 100416443 Gm18114 - - 12|12 A1.1 ribosomal protein L11 pseudogene pseudo 100504130 Gm17655 - - 5 F|5 53.3 cM zinc finger protein pseudogene pseudo 338346 Mm.445325 NM_177383 ENSMUSG00000053164 Gpr21 C230004C13Rik - 2|2 B G protein-coupled receptor 21 protein-coding 629949 Gm11619 - - 11|11 D predicted gene 11619 protein-coding 105244813 XR_868826 Gm40357 - - 6 A3.3|6 predicted gene, 40357 ncRNA 100502899 Gm10807 - - 10 B4|10 29.29 cM double homeobox pseudogene pseudo 16992 Mm.87787 NM_010735 ENSMUSG00000024402 Lta LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382 - 17 B1|17 18.59 cM lymphotoxin A protein-coding 670795 Mm.212297 Gm9502 - - 14 C1|14 predicted gene 9502 unknown 13615 Mm.284855 NM_007902 ENSMUSG00000028635 Edn2 ET-2|PPET2|VIC - 4|4 D2.1 endothelin 2 protein-coding 12826 Mm.738 NM_009931 ENSMUSG00000031502 Col4a1 Bru|Col4a-1|Raw|Svc - 8 A1.1|8 5.53 cM collagen, type IV, alpha 1 protein-coding 100502896 Mm.389560 NM_001277512 Gm11238 - - 4 C3|4 36.06 cM predicted gene 11238 protein-coding 329697 Mm.402786 AI849053 A830099K13 - 3|3 F1 expressed sequence AI849053 unknown 100035048 Obsty3 - - - obesity 3 unknown 57247 Mm.379084 NM_020497 ENSMUSG00000001065 Zfp276 AW048709|D8Ertd370e|D8Ertd377e|Znf276 - 8 E1|8 72.09 cM zinc finger protein (C2H2 type) 276 protein-coding 667354 Gm12969 - - 4|4 D2.2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105246735 XR_878618 Gm41977 - - 1 G3|1 predicted gene, 41977 ncRNA 62653 D14Mit173 - - 14 16.8 cM DNA segment, Chr 14, Massachusetts Institute of Technology 173 unknown 258636 Mm.377605 NM_146643 ENSMUSG00000075145 Olfr1155 MOR174-10 - 2|2 D olfactory receptor 1155 protein-coding 108167800 XR_001779740 Gm46217 - - 10 A3|10 predicted gene, 46217 ncRNA 105245127 XR_871566 Gm40621 - - 10 A4|10 predicted gene, 40621 ncRNA 735263 NR_030480 ENSMUSG00000076119 Mir698 Mirn698|mir-698|mmu-mir-698 - 4 D2.2|4 microRNA 698 ncRNA 14794 Mm.261906 NM_013539 ENSMUSG00000038451 Spsb2 AI461677|C9|Grcc9|SSB2 - 6 F2|6 59.17 cM splA/ryanodine receptor domain and SOCS box containing 2 protein-coding 100502653 Mm.149980 NR_045355 ENSMUSG00000097557 C130060C02Rik - - 19|19 A RIKEN cDNA C130060C02 gene ncRNA 105243916 Gm39634 - - 1|1 predicted gene, 39634 ncRNA 100039731 XR_868574 ENSMUSG00000058905 Gm10051 - - 5|5 G2 predicted pseudogene 10051 pseudo 108511960 Hist1h1cr1 - - 13 A Hist1h1cR1 erythroid cis-regulatory module biological-region 100036043 Mfat7 - - - M-line adiposity tissue, white adipose tissue 7 unknown 387185 NR_029576 ENSMUSG00000076379 Mir190a Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a - 9|9 C microRNA 190a ncRNA 19130 Mm.132579 NM_008937 ENSMUSG00000010175 Prox1 A230003G05Rik|PROX-1 - 1 H6|1 95.85 cM prospero homeobox 1 protein-coding 62901 D10Mit221 - - 10 32.93 cM DNA segment, Chr 10, Massachusetts Institute of Technology 221 unknown 12351 Mm.1641 NM_007607 ENSMUSG00000000805 Car4 AW456718|Ca4 - 11|11 C carbonic anhydrase 4 protein-coding 105244483 XR_867411 Gm40084 - - 3 F1|3 predicted gene, 40084 ncRNA 102633551 XR_373746 Gm31349 - - 1 H4|1 predicted gene, 31349 ncRNA 623208 Gm6409 EG623208 - 18|18 E4 high mobility group box 1-like pseudogene pseudo 21444 tclTuw25 tcl-Tuw25 - - t-complex lethal Tuw25 unknown 101055995 XR_877175 LOC101055995 - - 18 A1 putative E3 ubiquitin-protein ligase UNKL pseudogene pseudo 100504213 Gm14421 - - 2|2 99.18 cM predicted gene 14421 pseudo 193838 Mm.440199 NM_001163102 ENSMUSG00000073436 Eme2 2810013J18Rik - 17|17 A3.3 essential meiotic structure-specific endonuclease subunit 2 protein-coding 100416694 Gm18201 - - 7|7 A1 zinc finger protein 772 pseudogene pseudo 75521 Mm.159531 1700021P04Rik - - 19|19 B RIKEN cDNA 1700021P04 gene unknown 102633539 Gm15661 - - 7|7 49.2 cM predicted gene 15661 pseudo 666062 Gm7912 EG666062 - 17|17 A3.3 calcium binding protein 39-like pseudogene pseudo 116919 D13Jde6 - - - DNA segment, Chr 13, Jan Deussing 6 unknown 102637444 XR_383393 Gm34250 - - 14 C1|14 predicted gene, 34250 ncRNA 114675 Mm.424874 NM_001033230 ENSMUSG00000074224 4932431P20Rik - - 7|7 B1 RIKEN cDNA 4932431P20 gene unknown 102638995 XR_389070 Gm35420 - - 11 E1|11 predicted gene, 35420 ncRNA 72900 Mm.2206 NM_028388 ENSMUSG00000024099 Ndufv2 2900010C23Rik - 17 35.26 cM|17 E1.1 NADH dehydrogenase (ubiquinone) flavoprotein 2 protein-coding 13296 Del(17)1t-p Del(17)1t - - deletion, Chr 17, t 1, proximal other 666084 Gm7924 EG666084 - 6 D3|6 ribosomal protein L7A pseudogene pseudo 27226 Mm.9277 NM_013737 ENSMUSG00000023913 Pla2g7 PAF-AH|R75400 - 17|17 B3 phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) protein-coding 102637877 XR_376037 Gm34577 - - 3 G1|3 predicted gene, 34577 ncRNA 279766 Mm.260866 NM_177370 ENSMUSG00000034175 Rhbdd3 Ptag - 11|11 A1 rhomboid domain containing 3 protein-coding 105246999 XR_880672 Gm42185 - - 3 A1|3 predicted gene, 42185 ncRNA 105246705 Gm15675 - - 1|1 56.89 cM predicted gene 15675 ncRNA 102641876 Mm.488266 XR_869002 Gm38582 - - 6 B1-B2.1|6 predicted gene, 38582 ncRNA 105246671 XR_878419 Gm41923 - - 1 E1.1|1 predicted gene, 41923 ncRNA 74597 Mm.63783 NR_015506 ENSMUSG00000085287 4833418N02Rik - - 17|17 E4 RIKEN cDNA 4833418N02 gene ncRNA 100126458 Trav8n-2 Gm10906|Trav8-2 - 14|14 C2 T cell receptor alpha variable 8n-2 other 100043274 Trav9n-3 Gm10899 - 14|14 C2 T cell receptor alpha variable 9N-3 other 383531 Gm5257 EG383531 - 1|1 C4 ribosomal protein L7A pseudogene pseudo 102640823 Mm.379543 XR_385732 Gm26510 - - 17 E1.3|17 predicted gene, 26510 ncRNA 58194 Mm.286495 NM_021389 ENSMUSG00000040990 Sh3kbp1 1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta - X|X F4 SH3-domain kinase binding protein 1 protein-coding 105247252 Gm42382 - - 7|7 predicted gene, 42382 protein-coding 102639285 XR_380301 Gm35632 - - 10 B3|10 predicted gene, 35632 ncRNA 17153 Mm.39040 NM_010762 ENSMUSG00000027375 Mal Mpv17|Vip17 - 2|2 F1 myelin and lymphocyte protein, T cell differentiation protein protein-coding 20295 Mm.41988 NM_011332 ENSMUSG00000031780 Ccl17 Abcd-2|Scya17|Scya17l|Tarc - 8 C5|8 46.85 cM chemokine (C-C motif) ligand 17 protein-coding 56228 Mm.259095 NM_019586 ENSMUSG00000028277 Ube2j1 0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p - 4|4 A5 ubiquitin-conjugating enzyme E2J 1 protein-coding 78826 Mm.74639 NM_172435 ENSMUSG00000050921 P2ry10 5830408N17Rik|Lypsr2|P2Y10 - X|X D purinergic receptor P2Y, G-protein coupled 10 protein-coding 359931 DXMgc61 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 61 unknown 552876 LOC552876 - - - uncharacterized LOC552876 unknown 71289 4933436N17Rik - - 13|13 A3.3 RIKEN cDNA 4933436N17 gene protein-coding 105244088 XR_865987 Gm39762 - - 2 A3|2 predicted gene, 39762 ncRNA 78808 Mm.331751 NM_030191 ENSMUSG00000019790 Stxbp5 0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006 - 10|10 A1 syntaxin binding protein 5 (tomosyn) protein-coding 234388 Mm.295791 NM_026964 ENSMUSG00000007721 Ccdc124 1810023B24Rik - 8|8 B3.3 coiled-coil domain containing 124 protein-coding 492960 Epfq5 - - - epididymal fat pad weight QTL 5 unknown 110120409 LOC110120409 - - - VISTA enhancer mm325 biological-region 78783 Mm.356059 NM_030178 ENSMUSG00000001632 Brpf1 4833438B11Rik|4930540D11Rik|Brpf2 - 6|6 E3 bromodomain and PHD finger containing, 1 protein-coding 620583 Mm.446812 Gm9804 - - 12 B3|12 predicted gene 9804 protein-coding 328243 Mm.422236 E230012P03 - - 13|13 A5 uncharacterized protein E230012P03 protein-coding 241919 Mm.285366 NM_172861 ENSMUSG00000069072 Slc7a14 A930013N06|BC061928 - 3|3 A3 solute carrier family 7 (cationic amino acid transporter, y+ system), member 14 protein-coding 102641800 NR_155706 Gm38576 - - 18|18 predicted gene, 38576 ncRNA 28266 D10Jhu39 - - - DNA segment, Chr 10, Johns Hopkins University 39 unknown 105243231 XR_878965 Gm39209 - - 8 C2|8 predicted gene, 39209 ncRNA 102640797 XR_391854 ENSMUSG00000099537 Gm28938 - - Y A2|Y predicted gene 28938 ncRNA 12290 Mm.267517 NM_009782 ENSMUSG00000004110 Cacna1e A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E - 1 G3|1 66.14 cM calcium channel, voltage-dependent, R type, alpha 1E subunit protein-coding 102634492 Gm28314 - - Y|Y predicted gene 28314 ncRNA 102635158 XR_378848 Gm32567 Gm45656 - 8 A2|8 predicted gene, 32567 ncRNA 100042437 Mm.484984 NM_001166835 ENSMUSG00000096735 Vmn1r79 Gm9807 - 7|7 A1 vomeronasal 1 receptor 79 protein-coding 171267 Mm.434341 NM_134233 ENSMUSG00000066803 Vmn1r84 V1rg11 - 7|7 A1 vomeronasal 1 receptor 84 protein-coding 100416172 Gm13426 - - 2|2 B predicted gene 13426 pseudo 104368 Mm.491771 NR_002899 ENSMUSG00000064981 Snora70 MBI-5|Rnu70 - X|X A7.3 small nucleolar RNA, H/ACA box 70 snoRNA 330107 Mm.181852 E130218H05 - - 5|5 C3.3 uncharacterized protein E130218H05 unknown 100129 Mm.23235 NM_178406 ENSMUSG00000042804 Gpr153 1110065N12Rik|AI449320|PGR1 - 4|4 E2 G protein-coupled receptor 153 protein-coding 74772 Mm.205625 NM_029097 ENSMUSG00000036622 Atp13a2 1110012E06Rik|AA589443 - 4|4 D3 ATPase type 13A2 protein-coding 27056 Mm.6479 NM_012057 ENSMUSG00000029771 Irf5 AW491843|mirf5 - 6 A3.3|6 12.36 cM interferon regulatory factor 5 protein-coding 66505 Mm.397307 NM_144516 ENSMUSG00000021156 Zmynd11 2210402G22Rik|BS69 - 13|13 A1 zinc finger, MYND domain containing 11 protein-coding 12706 Ckb-ps2 Ck-ps1 - 17|17 C creatine kinase, brain, pseudogene 2 pseudo 59288 Mm.478285 NM_021608 ENSMUSG00000030868 Dctn5 4930427E12Rik|C78178|b2b315Clo - 7|7 F2 dynactin 5 protein-coding 100042918 XR_001781599 Uqcrh-ps1 Gm9763 - 15|15 F1 ubiquinol-cytochrome c reductase hinge protein, pseudogene 1 unknown 109438 Etlm2 - - - ethanol induced locomotion 2 unknown 209737 Mm.278920 NM_010620 ENSMUSG00000036768 Kif15 3110023M17Rik|3930402I10Rik|D330038N01|HKLP2|Knsl7|b2b1117.1Clo|b2b1117.1aClo - 9|9 F4 kinesin family member 15 protein-coding 16334 Mm.4946 NM_008387 ENSMUSG00000000215 Ins2 AA986540|Ins-2|InsII|Mody|Mody4 - 7 F5|7 88.0 cM insulin II protein-coding 22210 Mm.384918 NM_009458 ENSMUSG00000020390 Ube2b E2-14k|HR6B|Rad6b|mHR6B - 11|11 B1.3 ubiquitin-conjugating enzyme E2B protein-coding 258738 Mm.377666 NM_146743 ENSMUSG00000061000 Olfr507 MOR204-7 - 7|7 E3 olfactory receptor 507 protein-coding 101056115 XM_017312470 ENSMUSG00000091594 LOC101056115 - - 7 B3 zinc finger protein 120-like protein-coding 18637 Mm.10756 NM_011070 ENSMUSG00000006412 Pfdn2 ESTM27|W48336 - 1 H3|1 79.35 cM prefoldin 2 protein-coding 102642 Mm.437625 AL024003 - - - expressed sequence AL024003 unknown 102634625 XR_001778211 Gm32164 - - 7 D3|7 predicted gene, 32164 ncRNA 24066 Mm.42038 NM_011898 ENSMUSG00000024427 Spry4 A030006O18Rik|sprouty4 - 18 B3|18 20.5 cM sprouty RTK signaling antagonist 4 protein-coding 665005 Mm.384788 NR_033529 Gm7444 EG665005 - 9|9 B ring finger protein 19A pseudogene pseudo 98722 Mm.443645 AW556253 - - - expressed sequence AW556253 protein-coding 102467503 n-TCgca42 n-Tc42 - 6 B2.3|6 nuclear encoded tRNA cysteine 42 (anticodon GCA) tRNA 13466 Dp(3)10H Dp10H - - duplication, Chr 3, Harwell 10 other 105246545 Mm.417662 Gm41819 - - 19|19 predicted gene, 41819 ncRNA 102640601 Gm36627 - - 18 E3|18 transcription elongation factor 1 homolog pseudo 100417877 Gm18874 - - 1|1 D elongation factor RNA polymerase II-like 3 pseudogene pseudo 102634853 Mm.412053 XR_374685 Gm13652 - - 2 C3|2 44.41 cM predicted gene 13652 ncRNA 76253 Mm.396258 XR_391624 0610006L08Rik - - 7|7 D1 RIKEN cDNA 0610006L08 gene unknown 107848 Trex2b - - - Tcr1 region expressed 2, D17Leh66b region protein-coding 381359 Mm.379512 NM_001123362 ENSMUSG00000079466 Prdm12 Gm998 - 2|2 B PR domain containing 12 protein-coding 105242868 XR_880164 Gm38957 - - 11 D|11 predicted gene, 38957 ncRNA 100417348 Gm18550 - - 16|16 C3.1 signal recognition particle 72 pseudogene pseudo 108909 Mm.290502 NM_145626 ENSMUSG00000042901 Aida 2610208M17Rik|BC004835 - 1|1 H5 axin interactor, dorsalization associated protein-coding 18977 Pomc-ps1 Pomc-2|Pomc2 - 19 A|19 10.39 cM pro-opiomelanocortin, pseudogene 1 pseudo 53790 D0Tu46 D17Tu46 - - DNA segment, Tubingen 46 unknown 57874 Mm.308180 NM_021345 ENSMUSG00000033629 Hacd3 4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1 - 9|9 C 3-hydroxyacyl-CoA dehydratase 3 protein-coding 53872 Mm.427589 NM_016739 ENSMUSG00000027184 Caprin1 AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105 - 2|2 E2 cell cycle associated protein 1 protein-coding 111395 Emv23 C58v-4|Emv-23 - - endogenous ecotropic MuLV 23 other 100124442 NR_030564 ENSMUSG00000076966 Mir466b-2 Mirn466b-2 - 2 A1|2 microRNA 466b-2 ncRNA 11908 Mm.676 NM_007497 ENSMUSG00000023027 Atf1 - - 15|15 F1 activating transcription factor 1 protein-coding 664896 Gm7394 EG664896 - 7|7 C predicted gene 7394 pseudo 108168047 Gm46388 - - 13 C2|13 40S ribosomal protein S8 pseudogene pseudo 102638497 XR_387256 Gm35048 - - 1 D|1 predicted gene, 35048 ncRNA 101055748 LOC101055748 - - 2 F3 ADP/ATP translocase 2 pseudogene pseudo 492873 Aod5 - - - autoimmune ovarian dysgenesis 5 unknown 108168960 XM_017320497 Gm45533 - - 4 D3|4 predicted gene 45533 protein-coding 100302576 Gm10243 - - 6|6 B2.3 ribosomal protein L35a pseudogene pseudo 102633986 Mm.448816 XM_006516422 Gm31679 - - 12 C2|12 predicted gene, 31679 protein-coding 100042299 Gm3778 - - 14|14 A2 predicted gene 3778 pseudo 61915 D4Mit298 - - 4 39.4 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 298 unknown 70134 Mm.41017 NM_001291292 ENSMUSG00000074217 2210011C24Rik - - 8|8 C2 RIKEN cDNA 2210011C24 gene protein-coding 77577 Mm.46185 NM_029932 ENSMUSG00000020798 Spns3 9830002I17Rik - 11|11 B4 spinster homolog 3 protein-coding 93692 Mm.25844 NM_053108 ENSMUSG00000021591 Glrx C86710|D13Wsu156e|Glrx1|Grx1|TTase - 13 C1|13 40.95 cM glutaredoxin protein-coding 100418199 Gm19069 - - X|X A4 mitogen-activated protein kinase associated protein 1 pseudogene pseudo 111253 Gm2a-rs1 - - - GM2 ganglioside activator protein, related sequence 1 pseudo 258175 Olfr595-ps1 MOR32-6P - 7|7 E3 olfactory receptor 595, pseudogene 1 pseudo 102639675 Gm35931 - - 6|6 predicted gene, 35931 pseudo 62917 D10Mit183a D10Mit1005|D10Mit183 - 10 10.11 cM DNA segment, Chr 10, Massachusetts Institute of Technology 183a unknown 67103 Mm.34497 NM_025968 ENSMUSG00000028378 Ptgr1 2510002C21Rik|Ltb4dh|Zadh3 - 4|4 B3 prostaglandin reductase 1 protein-coding 100861869 Mm.84499 NR_105058 Gm21283 - - 8 D3|8 predicted gene, 21283 ncRNA 100417033 Gm18374 - - 6|6 F2 predicted gene, 18374 pseudo 668809 Gm9372 EG668809 - 3|3 G1 predicted gene 9372 pseudo 329065 Mm.313583 NM_183216 ENSMUSG00000050195 Scd4 ACOD4 - 19|19 C3 stearoyl-coenzyme A desaturase 4 protein-coding 93967 Mm.441781 NM_053150 Klra20 Ly49t - 6|6 F3 killer cell lectin-like receptor subfamily A, member 20 protein-coding 12564 Mm.441131 NM_007667 ENSMUSG00000036510 Cdh8 AI851472|cad8 - 8 D1|8 49.4 cM cadherin 8 protein-coding 102635202 Mm.405527 XR_390554 ENSMUSG00000084787 Gm12436 - - 4 B1|4 26.27 cM predicted gene 12436 ncRNA 404422 Olfr758-ps1 - - 17|17 B1 olfactory receptor 758, pseudogene 1 pseudo 102640366 Gm29423 - - Y|Y predicted gene 29423 ncRNA 107435 Mm.272472 NM_026115 ENSMUSG00000027018 Hat1 2410071B14Rik|AA536933|Hat-1|KAT1 - 2|2 C2 histone aminotransferase 1 protein-coding 105244527 XR_001783952 Gm40121 - - 3 F2.3|3 predicted gene, 40121 ncRNA 14061 Mm.89048 NM_010168 ENSMUSG00000027249 F2 Cf-2|Cf2|FII - 2 E1|2 50.63 cM coagulation factor II protein-coding 65973 Mm.222206 NM_023066 ENSMUSG00000028207 Asph 2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37 - 4|4 A1 aspartate-beta-hydroxylase protein-coding 319569 8030445P17Rik - - 1|1 RIKEN cDNA 8030445P17 gene protein-coding 53782 DXHXF34 DXF34h|DXF34h-rs1|DXF34h-rs2 - - DNA segment, Chr X, human DXF34 unknown 80888 Mm.21549 NM_030704 ENSMUSG00000041548 Hspb8 AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22 - 5 F|5 56.41 cM heat shock protein 8 protein-coding 100417552 Gm18684 - - 15|15 B1 ecdysoneless homolog pseudogene pseudo 66940 Mm.196533 NM_025858 ENSMUSG00000025647 Shisa5 2310008D10Rik|6430628I05Rik|Scotin|mShisa5 - 9|9 F2 shisa family member 5 protein-coding 73416 1700061D14Rik - - 5|5 RIKEN cDNA 1700061D14 gene protein-coding 170716 Mm.254838 NM_130882 ENSMUSG00000024055 Cyp4f13 0610030I10Rik|Cypf13 - 17|17 B1 cytochrome P450, family 4, subfamily f, polypeptide 13 protein-coding 320653 A630078F23Rik - - 3|3 RIKEN cDNA A630078F23 gene protein-coding 67661 Mm.293023 NM_026298 ENSMUSG00000038564 Ift172 4930553F24Rik|Slb|avc1|wim - 5|5 B1 intraflagellar transport 172 protein-coding 20475 Mm.3410 NM_011383 ENSMUSG00000040841 Six5 Dmahp|MDMAHP|TrexBF - 7 A3|7 9.46 cM sine oculis-related homeobox 5 protein-coding 105245589 XR_873810 Gm41021 - - 13 C3|13 predicted gene, 41021 ncRNA 102639855 XR_375735 Gm36069 - - 3 E3|3 predicted gene, 36069 ncRNA 102638277 XR_378447 Gm34878 - - 7 F1|7 predicted gene, 34878 ncRNA 85126 D5Mit128 - - 5 21.41 cM DNA segment, Chr 5, Massachusetts Institute of Technology 128 unknown 625473 Mm.37523 XM_017321878 Gm6590 EG625473 - 6|6 F3 predicted gene 6590 protein-coding 223881 Mm.274010 NM_172612 ENSMUSG00000054855 Rnd1 A830014L09Rik|Arhs - 15|15 F1 Rho family GTPase 1 protein-coding 353287 Mm.135495 NM_181549 ENSMUSG00000033633 Clec18a Mrcl - 8|8 E1 C-type lectin domain family 18, member A protein-coding 100035341 Org4 ORG6.1 - 6 6.68 cM organ weight 4 unknown 668429 Gm9165 EG668429 - 7|7 F2 SEC14 and spectrin domains 1 pseudogene pseudo 100416961 Gm18339 - - 12|12 C1 transcriptional adaptor 1 pseudogene pseudo 62613 D13Mit161 - - - DNA segment, Chr 13, Massachusetts Institute of Technology 161 unknown 68366 Mm.491151 NM_026698 ENSMUSG00000019295 Tmem129 0610039G24Rik|2410015J15Rik|AA409575 - 5|5 B2 transmembrane protein 129 protein-coding 102467526 n-TGacc1 n-Tg1 - 11 B1.2|11 nuclear encoded tRNA glycine 1 (anticodon ACC) tRNA 108167338 XR_382308 Gm45949 - - 13 A5|13 predicted gene, 45949 ncRNA 672637 Gm12085 - - 11|11 A3.3 fibrillarin pseudogene pseudo 51990 D9Ertd12e - - 9 7.84 cM DNA segment, Chr 9, ERATO Doi 12, expressed unknown 76240 6430709C05Rik - - 10|10 RIKEN cDNA 6430709C05 gene protein-coding 223970 Mm.325777 NM_001033278 ENSMUSG00000037991 Rmi2 A630055G03Rik|Gm537|Gm929 - 16|16 A1 RecQ mediated genome instability 2 protein-coding 100503572 Mm.375091 NM_001195338 ENSMUSG00000084957 Bbip1 2310002J21Rik|2610002B11Rik|4930560M04Rik|Ncrna00081 - 19|19 D2 BBSome interacting protein 1 protein-coding 108168735 LOC108168735 - - 2 H4 zinc finger protein 844-like pseudo 56428 Mm.28023 NM_019758 ENSMUSG00000027282 Mtch2 2310034D24Rik|4930539J07Rik|HSPC032 - 2|2 E1 mitochondrial carrier 2 protein-coding 73080 2900084O13Rik - - 17|17 RIKEN cDNA 2900084O13 gene protein-coding 116532 Tbrs3 Tbrl3|Trl-3 - 7 25.61 cM tuberculosis resistance 3 unknown 381572 Mm.184290 NM_198662 ENSMUSG00000028593 9430007A20Rik Aadacl4|Gm1034 - 4|4 E1 RIKEN cDNA 9430007A20 gene protein-coding 100036248 Pfat3 - - 13 27.68 cM predicted fat percentage 3 unknown 76016 5730406G12Rik - - 14|14 RIKEN cDNA 5730406G12 gene protein-coding 16033 Igh-J Jh - - immunoglobulin heavy chain, joining region other 665778 Gm12565 - - 3|3 B PRELI domain containing 1 pseudogene pseudo 22061 Mm.20894 NM_011641 ENSMUSG00000022510 Trp63 AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1 - 16 B1|16 17.37 cM transformation related protein 63 protein-coding 69337 Mm.396168 NR_131049 ENSMUSG00000085470 1700012C14Rik - - 6|6 A3.3 RIKEN cDNA 1700012C14 gene ncRNA 100043060 Mm.429093 Gm4200 - - 15 F3|15 predicted gene 4200 protein-coding 101056177 Gm29790 - - 8|8 predicted gene, 29790 protein-coding 11481 Mm.8940 NM_007397 ENSMUSG00000061393 Acvr2b 4930516B21Rik|ActRIIB - 9|9 F3 activin receptor IIB protein-coding 21757 Tet(5<12>)1Jic - - - tetrasomy, Chr 5 and 12, Central Institute for Experimental Animals, Japan other 100416457 Gm18120 - - 10|10 B3 ribosomal protein L15 pseudogene pseudo 61348 D4Mit120 - - 4 51.43 cM DNA segment, Chr 4, Massachusetts Institute of Technology 120 unknown 100312543 Vmn1r-ps114 Gm11316 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 114 pseudo 60807 D4Mit33 - - 4 81.43 cM DNA segment, Chr 4, Massachusetts Institute of Technology 33 unknown 116838 Mm.309296 NM_053271 ENSMUSG00000037386 Rims2 2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751 - 15 B3.1|15 15.45 cM regulating synaptic membrane exocytosis 2 protein-coding 100418045 Gm18964 - - 6|6 B1 cell division cycle 42 homolog pseudogene pseudo 102640401 Gm36468 - - Y|Y predicted gene, 36468 protein-coding 102638070 Gm16304 - - 1 E4|1 60.86 cM predicted gene 16304 pseudo 13195 Mm.12906 NM_016672 ENSMUSG00000020182 Ddc Aadc - 11 A1|11 7.09 cM dopa decarboxylase protein-coding 77290 Mm.395042 NR_131073 ENSMUSG00000112765 9430078K24Rik - - 12|12 C3 RIKEN cDNA 9430078K24 gene ncRNA 258763 Mm.377679 NM_146767 ENSMUSG00000075166 Olfr1104 MOR207-1 - 2|2 D olfactory receptor 1104 protein-coding 245474 Mm.291062 NM_001030307 ENSMUSG00000031403 Dkc1 BC068171 - X|X A7.3 dyskeratosis congenita 1, dyskerin protein-coding 100418377 Gm19168 - - 10|10 B5.3 TPX2, microtubule-associated protein homolog pseudogene pseudo 210876 Mm.390947 NM_001104573 ENSMUSG00000095093 Vmn2r111 EG210876|V2rp2 - 17|17 A3.3 vomeronasal 2, receptor 111 protein-coding 105245297 Gm40772 - - 10|10 predicted gene, 40772 ncRNA 381246 Mm.311142 NM_001011873 ENSMUSG00000067813 Xkr9 Gm1620|XRG9 - 1|1 A3 X-linked Kx blood group related 9 protein-coding 62252 D18Mit35 - - 18 23.86 cM DNA segment, Chr 18, Massachusetts Institute of Technology 35 unknown 14527 Mm.22329 NM_008101 ENSMUSG00000025127 Gcgr GR - 11|11 E2 glucagon receptor protein-coding 102636797 XR_383798 Gm33769 - - 14 E5|14 predicted gene, 33769 ncRNA 18627 Mm.482463 NM_011066 ENSMUSG00000055866 Per2 mKIAA0347|mPer2 - 1|1 D period circadian clock 2 protein-coding 15525 Mm.239865 NM_008300 ENSMUSG00000020361 Hspa4 70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025 - 11 B1.3|11 31.91 cM heat shock protein 4 protein-coding 61430 D5Mit235 - - 5 39.55 cM DNA segment, Chr 5, Massachusetts Institute of Technology 235 unknown 12651 Mm.485045 NM_007692 ENSMUSG00000022617 Chkb Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek - 15|15 E3 choline kinase beta protein-coding 108168319 Gm46576 - - 17 E1.1|17 60S ribosomal protein L39 pseudogene pseudo 102635212 Gm32607 - - 12|12 predicted gene, 32607 pseudo 105244717 XM_011240803 Gm40275 - - 5 B1|5 predicted gene, 40275 protein-coding 219180 Gm4821 EG219180 - 14|14 D3 ribosomal protein S2 pseudogene pseudo 61674 D6Mit294 - - 6 77.7 cM DNA segment, Chr 6, Massachusetts Institute of Technology 294 unknown 108168613 XM_017318820 LOC108168613 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 100035247 Nhdlq8 - - - non-HDL QTL 8 unknown 408076 D6Wum34 - - - DNA segment, Chr 6, Washington University School of Medicine 34 unknown 16499 Mm.232472 NM_010599 ENSMUSG00000018470 Kcnab3 C330022D06Rik|Kcnab4|mKv(beta)4 - 11|11 B3 potassium voltage-gated channel, shaker-related subfamily, beta member 3 protein-coding 666978 Gm8398 EG666978 - 7|7 E2 predicted gene 8398 pseudo 102632372 XR_381993 Gm30461 - - 12 F1|12 predicted gene, 30461 ncRNA 100040014 Gm11527 - - 11|11 D predicted gene 11527 protein-coding 102632100 XR_386555 Gm30263 - - 19 A|19 predicted gene, 30263 ncRNA 77914 Mm.293692 NM_001099774 ENSMUSG00000078252 Krtap17-1 A030006P16Rik - 11|11 D keratin associated protein 17-1 protein-coding 111751 Ms13-10 Ms13-Ps10 - - minisatellite 13-10 detected by M13 phage probe other 102635033 Gm32472 - - X|X predicted gene, 32472 protein-coding 108193 Cenpc-ps1 - - - centromere autoantigen C, pseudogene 1 pseudo 442810 A130023E24Rik - - 13|13 A1 RIKEN cDNA A130023E24 gene unknown 12193 Mm.259321 NM_001001806 ENSMUSG00000045817 Zfp36l2 Brf2|ERF2|Tis11d - 17|17 E4 zinc finger protein 36, C3H type-like 2 protein-coding 258503 Mm.377540 NM_146510 ENSMUSG00000063660 Olfr98 MOR156-4 - 17|17 B1 olfactory receptor 98 protein-coding 102465644 NR_106031 ENSMUSG00000098593 Mir7064 Gm27632|mmu-mir-7064 - 7|7 F5 microRNA 7064 ncRNA 102634385 XR_383764 Gm31981 - - 14 E4|14 predicted gene, 31981 ncRNA 100217416 Mm.296240 NR_034052 ENSMUSG00000065939 Snora2b MBI-137 - 15 F1|15 small nucleolar RNA, H/ACA box 2B snoRNA 105245742 XR_874574 Gm41141 - - 14 C1|14 predicted gene, 41141 ncRNA 102637358 Gm21271 - - Y|Y predicted gene, 21271 protein-coding 724035 Igkv20-101-2 - - 6|6 C1 immunoglobulin kappa chain variable 20-101-2 other 102638700 LOC102638700 - - 15 D3 cyclin-dependent kinases regulatory subunit 2 pseudogene pseudo 387247 NR_029656 ENSMUSG00000065453 Mirlet7d Mirnlet7d|let-7d|mmu-let-7d - 13|13 A5 microRNA let7d ncRNA 110845 Mybbp1a-rs2 P160-rs2 - - MYB binding protein (P160) 1a, related sequence 2 protein-coding 667597 Mm.329462 NM_145357 BC023105 - - 18|18 D3 cDNA sequence BC023105 unknown 13458 Dp(15)5H Dp5H - - duplication, Chr 15, Harwell 5 other 667339 Gm8581 EG667339 - 1|1 C1.3 ribosomal protein L6 pseudogene pseudo 331374 Mm.392752 NM_177914 ENSMUSG00000062393 Dgkk Gm360 - X|X A1.1 diacylglycerol kinase kappa protein-coding 51901 Mm.440700 D2Ertd295e - - 2 30.69 cM DNA segment, Chr 2, ERATO Doi 295, expressed unknown 622297 Gm6308 EG622297 - 6|6 F2 ATPase, H+ transporting, lysosomal V1 subunit G1 pseudogene pseudo 100034944 Angfq4 - - 18 51.91 cM angiogenesis due to FGF2 QTL 4 unknown 52665 Mm.28930 NM_025855 ENSMUSG00000019883 Echdc1 1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD - 10 A4|10 16.59 cM enoyl Coenzyme A hydratase domain containing 1 protein-coding 66690 Mm.10068 NM_025708 ENSMUSG00000043140 Tmem186 2810440M13Rik|4432406C05Rik|AI648175|AW210586 - 16|16 A1 transmembrane protein 186 protein-coding 67622 Mm.64962 NM_026280 ENSMUSG00000020814 Mxra7 1810057P16Rik|E130302J09Rik - 11|11 E2 matrix-remodelling associated 7 protein-coding 108168821 XR_001783589 Gm46779 - - 2 H3|2 predicted gene, 46779 ncRNA 102638686 XR_381704 Gm35189 - - 12 C3|12 predicted gene, 35189 ncRNA 97935 C86595 - - - expressed sequence C86595 unknown 100039429 Gm2231 - - X|X A3.2 predicted gene 2231 pseudo 28173 D16Ium39e D16Ium39 - - DNA segment, Chr 16, Indiana University Medical 39, expressed unknown 105244981 XR_870456 Gm40499 - - 8 B3.1|8 predicted gene, 40499 ncRNA 359977 DXMgc114 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 114 unknown 623475 Gm6434 EG623475 - 7|7 A3 predicted gene 6434 protein-coding 18507 Mm.439659 NM_008782 ENSMUSG00000014030 Pax5 BSAP|EBB-1|KLP|Pax-5 - 4 B1|4 23.55 cM paired box 5 protein-coding 78101 Mm.437976 8430411E10Rik - - 14|14 RIKEN cDNA 8430411E10 gene protein-coding 85186 D18Mit27 - - 18 11.96 cM DNA segment, Chr 18, Massachusetts Institute of Technology 27 unknown 407812 Mm.359154 NM_001001180 ENSMUSG00000060314 Zfp941 - - 7|7 F4 zinc finger protein 941 protein-coding 635187 Gm7151 EG635187 - 7|7 A1 predicted gene 7151 pseudo 73724 Mm.10093 NM_028626 ENSMUSG00000033429 Mcee 1110007A04Rik - 7|7 C methylmalonyl CoA epimerase protein-coding 102632099 XR_380792 Gm30262 - - 10 D1|10 predicted gene, 30262 ncRNA 319493 Mm.234565 NM_001033378 ENSMUSG00000074497 A430078G23Rik - - 8|8 A1.1 RIKEN cDNA A430078G23 gene protein-coding 108168098 XM_017315684 Gm46427 - - 13 B3|13 predicted gene, 46427 protein-coding 100125253 Trbj1-6 Gm16651 - 6 19.69 cM|6 B1 T cell receptor beta joining 1-6 other 665722 Gm7758 EG665722 - 18|18 A2 predicted gene 7758 pseudo 11992 Mm.252034 NM_016709 ENSMUSG00000021460 Auh C77140|W91705 - 13|13 B1 AU RNA binding protein/enoyl-coenzyme A hydratase protein-coding 69781 Mm.440728 NR_037959 ENSMUSG00000101585 1600010M07Rik - - 7|7 E3 RIKEN cDNA 1600010M07 gene ncRNA 100042674 Gm11197 - - 11|11 B5 predicted gene 11197 pseudo 380664 Mm.339371 NM_001081193 ENSMUSG00000048661 Lemd3 AI316861|Man1 - 10|10 D2 LEM domain containing 3 protein-coding 75079 Mm.258741 NM_029162 ENSMUSG00000029127 Zbtb49 4930518A03Rik|Zfp509|Znf509 - 5|5 B3 zinc finger and BTB domain containing 49 protein-coding 102467628 n-TRacg1 n-Tr1 - 13 A3.1|13 nuclear encoded tRNA arginine 1 (anticodon ACG) tRNA 668343 Gm9115 EG668343 - X D|X ornithine decarboxylase, structural 1 pseudogene pseudo 100316715 NR_035499 ENSMUSG00000087932 Mir1971 mmu-mir-1971 - 14 D3|14 41.21 cM microRNA 1971 ncRNA 101056100 LOC101056100 - - 1 A4 centrin-4 pseudogene pseudo 69306 Mm.288704 NM_027031 ENSMUSG00000044056 Efcab9 1700007I06Rik|4930403C08Rik - 11|11 A4 EF-hand calcium binding domain 9 protein-coding 233726 Mm.222328 NM_181517 ENSMUSG00000066232 Ipo7 A330055O14Rik|C330016G14|Imp7|Ranbp7 - 7|7 E3 importin 7 protein-coding 105242905 Gm38986 - - 11|11 predicted gene, 38986 ncRNA 108251 Gapdh-ps3 Gapd-ps3|domes3 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 3 pseudo 105245635 XR_873963 Gm41063 - - 13 D2.2|13 predicted gene, 41063 ncRNA 61207 D1Mit163 - - 1 49.76 cM DNA segment, Chr 1, Massachusetts Institute of Technology 163 unknown 258134 Mm.489574 NM_001011844 Olfr426 GA_x6K02T2P20D-21063569-21062619|MOR105-13_p|MOR105-8 - 1|1 H3 olfactory receptor 426 protein-coding 108167978 XR_001780543 Gm46332 - - 12 A1.1|12 predicted gene, 46332 ncRNA 105242651 XR_869064 Gm38806 - - 6 B2.3|6 predicted gene, 38806 ncRNA 100035199 Vacq1 - - 2 103.43 cM voluntary alcohol consumption QTL 1 unknown 105243528 XR_871266 Gm39423 - - 9 F2|9 predicted gene, 39423 ncRNA 240879 Mm.484621 NM_001143956 ENSMUSG00000040113 Mettl11b Gm207|NTM1B - 1|1 H2.1 methyltransferase like 11B protein-coding 102639386 XR_378902 Gm35712 - - 8 A4|8 predicted gene, 35712 ncRNA 100043762 Gm14442 - - 2|2 H4 predicted gene 14442 protein-coding 258464 Mm.271389 NM_146472 ENSMUSG00000044170 Olfr1384 MOR256-23 - 11|11 B1.2 olfactory receptor 1384 protein-coding 102278 Mm.36434 NM_170684 ENSMUSG00000034796 Cpne7 AW047065 - 8|8 E1 copine VII protein-coding 27462 17F4L - - - DNA segment, 17F4L unknown 215449 Mm.233009 NM_024457 ENSMUSG00000052681 Rap1b 2810443E11Rik - 10|10 D2 RAS related protein 1b protein-coding 14272 Mm.3496 NM_008033 ENSMUSG00000015994 Fnta FTA - 8 A2|8 14.27 cM farnesyltransferase, CAAX box, alpha protein-coding 114081 Axtofd1 - - - anxiety-open field defecation 1 unknown 236904 Mm.115533 NM_153165 ENSMUSG00000043929 Klhl15 6330500C13Rik - X|X C3 kelch-like 15 protein-coding 269639 Mm.259127 NM_172993 ENSMUSG00000062761 Zfp512 2500002M11Rik|AI450173|D230008H22|Znf512 - 5|5 B1 zinc finger protein 512 protein-coding 52481 D7Ertd758e - - 7 32.75 cM DNA segment, Chr 7, ERATO Doi 758, expressed unknown 106581 Mm.28844 NM_207217 ENSMUSG00000024187 Fam234a Itfg3 - 17|17 A3.3 family with sequence similarity 234, member A protein-coding 102638991 Gm35418 - - 14|14 predicted gene, 35418 ncRNA 77842 B230112G18Rik - - 8|8 RIKEN cDNA B230112G18 gene protein-coding 19334 Mm.275304 NM_024436 ENSMUSG00000027519 Rab22a 3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22 - 2 H3-H4|2 97.26 cM RAB22A, member RAS oncogene family protein-coding 667679 Gm8757 EG667679 - X|X B predicted gene 8757 pseudo 16885 Mm.15409 NM_010717 ENSMUSG00000029674 Limk1 KIZ-1|LIMK-1|Limk - 5 74.73 cM|5 G2 LIM-domain containing, protein kinase protein-coding 114679 Mm.34046 NM_053267 ENSMUSG00000075702 Selenom 1500040L08Rik|A230103K18|Selm|Sepm - 11|11 A1 selenoprotein M protein-coding 102640793 Gm36776 - - 7 A3|7 predicted gene, 36776 pseudo 27518 B545C9S - - - DNA segment, B545C9S unknown 13421 Mm.272258 NM_007870 ENSMUSG00000025279 Dnase1l3 DNasegamma|Dhp2|Lsd - 14|14 A1 deoxyribonuclease 1-like 3 protein-coding 100124293 Traj59 Gm16770 - 14|14 C2 T cell receptor alpha joining 59 other 13167 Mm.2785 NM_007830 ENSMUSG00000026385 Dbi ACBD1|Acbp|EP|endozepine - 1|1 E2.3 diazepam binding inhibitor protein-coding 60769 D2Mit83 - - 2 19.38 cM DNA segment, Chr 2, Massachusetts Institute of Technology 83 unknown 102632168 XR_379566 Gm30314 - - 9 C|9 predicted gene, 30314 ncRNA 493000 Lvrq8 - - - liver weight QTL 8 unknown 16630 Mm.482592 NM_010646 Klra12 Ly49L|Ly49l1|Ly49l2|Ly49l3|Ly49l4|Ly49p/d - 6 F3|6 killer cell lectin-like receptor subfamily A, member 12 protein-coding 61608 D9Mit247 - - 9 20.73 cM DNA segment, Chr 9, Massachusetts Institute of Technology 247 unknown 11883 Mm.620 NM_009713 ENSMUSG00000022620 Arsa AS-A|ASA|AW212749|As-2|As2|TISP73 - 15|15 E3 arylsulfatase A protein-coding 26421 Mm.457984 NM_011954 Prl2c4 MRP-3|Mrpplf3|PLF-3|mrp/plf3 - 13|13 A1 prolactin family 2, subfamily c, member 4 protein-coding 108511953 Gata2r7-gata2r8 Gata2r7|Gata2r8 - 6 D1 Gata2R7 and Gata2R8 erythroid cis-regulatory modules biological-region 14720 Got2-ps1 - - 5|5 G2 glutamatic-oxaloacetic transaminase 2, mitochondrial, pseudogene 1 pseudo 100201 Mm.394111 NM_181401 ENSMUSG00000043252 Tmem64 9630015D15Rik|AI790744|AV300874 - 4|4 A2 transmembrane protein 64 protein-coding 100526469 NR_037224 ENSMUSG00000093273 Mir3064 mir-3064|mmu-mir-3064 - 11 E1|11 70.02 cM microRNA 3064 ncRNA 102633814 XR_377768 Gm31547 - - 6 C1|6 predicted gene, 31547 ncRNA 102632085 XR_384865 Gm30252 - - 16 B4|16 predicted gene, 30252 ncRNA 104086 Mm.85083 NM_024264 ENSMUSG00000026170 Cyp27a1 1300013A03Rik|Cyp27 - 1 C4|1 38.54 cM cytochrome P450, family 27, subfamily a, polypeptide 1 protein-coding 100417228 Gm18467 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 116762 Drb9 - - - dopamine receptor binding 9 unknown 100035823 Lfq3 - - - live fetuses QTL 3 unknown 111409 Emv47 Emv-47 - - endogenous ecotropic MuLV 47 other 72055 Mm.253403 NM_024249 ENSMUSG00000061306 Slc38a10 1810073N04Rik - 11|11 E2 solute carrier family 38, member 10 protein-coding 100126198 Skts-fp3 - - - skin tumor susceptibility in FVB and PWK 3 unknown 102636502 Gm21790 - - Y|Y predicted gene, 21790 protein-coding 102631533 XR_388285 Gm29846 - - 19 A|19 predicted gene, 29846 ncRNA 14241 Mm.5111 NM_008024 ENSMUSG00000097084 Foxl1 FREAC7|Fkh6|fkh-6 - 8 E1|8 70.34 cM forkhead box L1 protein-coding 105242916 LOC105242916 - - 11 C 60S ribosomal protein L35 pseudogene pseudo 100035895 Imebt1 - - - imprinting effect on body traits 1 unknown 69591 Mm.482947 NR_131979 ENSMUSG00000097468 Mdrl 2310010G23Rik - X|X A3.3 mitochondrial dynamic related lncRNA ncRNA 74270 Mm.346654 NM_028846 ENSMUSG00000026854 Usp20 1700055M05Rik|AI467231|Vdu2 - 2|2 B ubiquitin specific peptidase 20 protein-coding 52023 Mm.22835 NM_029320 ENSMUSG00000022064 Pibf1 - - 14 E2.2|14 49.27 cM progesterone immunomodulatory binding factor 1 protein-coding 20339 Mm.5245 NM_011345 ENSMUSG00000026582 Sele CD62E|E-selectin|ELAM-1|Elam|LECAM2 - 1 H2.2|1 71.35 cM selectin, endothelial cell protein-coding 80904 Mm.271724 NM_030714 ENSMUSG00000040415 Dtx3 Deltex3|mg310 - 10|10 D3 deltex 3, E3 ubiquitin ligase protein-coding 100416822 Gm18280 - - 18|18 E4 predicted gene, 18280 pseudo 53321 Mm.474527 NM_016782 ENSMUSG00000017167 Cntnap1 AI841080|Caspr|NCP1|Nrxn4|p190|shm - 11|11 D contactin associated protein-like 1 protein-coding 244879 Mm.116713 NM_001081152 ENSMUSG00000033054 Npat 6820401K01|AI427561|BB112559 - 9 A5.3|9 29.12 cM nuclear protein in the AT region protein-coding 102642508 Gm38613 - - 16|16 predicted gene, 38613 ncRNA 27859 D0Nds18 - - - DNA segment, Nuffield Department of Surgery 18 unknown 105243955 XR_865526 Gm39662 Gm45835 - 1 C3|1 predicted gene, 39662 ncRNA 100217457 NR_028552 ENSMUSG00000064871 Snord58b MBII-199 - 18 E2|18 50.96 cM small nucleolar RNA, C/D box 58B snoRNA 436054 Gm5742 EG436054 - 8 D1|8 thymidine kinase 1 pseudogene pseudo 73503 Mm.160088 NM_028557 ENSMUSG00000038691 Mbd3l1 1700070G05Rik|1700095H13Rik|Mbd3l - 9|9 A2 methyl-CpG binding domain protein 3-like 1 protein-coding 320822 Mm.444414 4732417M03Rik - - 14|14 RIKEN cDNA 4732417M03 gene protein-coding 14400 Mm.38567 NM_008069 ENSMUSG00000029212 Gabrb1 AW061132|B230208N19Rik|Gabrb-1 - 5 C3.2|5 38.18 cM gamma-aminobutyric acid (GABA) A receptor, subunit beta 1 protein-coding 18534 Mm.266867 NM_011044 ENSMUSG00000027513 Pck1 AI265463|PEPCK|PEPCK-C|Pck-1 - 2 H3|2 95.79 cM phosphoenolpyruvate carboxykinase 1, cytosolic protein-coding 65020 Mm.292297 NM_022981 ENSMUSG00000058638 Zfp110 2900024E01Rik|N28112|NRIF|Nrif1 - 7 A1|7 7.66 cM zinc finger protein 110 protein-coding 110599581 LOC110599581 - - - Cyp1b1 5' regulatory region biological-region 668783 Gm9357 EG668783 - 7 B4|7 karyopherin alpha 7 (importin alpha 8) pseudogene pseudo 209488 Mm.157431 NM_197944 ENSMUSG00000062007 Hsh2d ALX|Hsh2 - 8|8 B3.3 hematopoietic SH2 domain containing protein-coding 665631 Gm7721 EG665631 - 5 E1|5 chromobox protein homolog 3 pseudogene pseudo 62640 D14Mit142 - - 14 27.68 cM DNA segment, Chr 14, Massachusetts Institute of Technology 142 unknown 108168052 XR_001780837 ENSMUSG00000114767 Gm46392 - - 13 A3.3|13 predicted gene, 46392 ncRNA 109279951 LOC109279951 Mm406 - - VISTA enhancer mm406 biological-region 22202 Mm.422949 NM_011667 ENSMUSG00000069053 Uba1y A1s9Y-1|Sby|Ube-2|Ube1ay|Ube1y|Ube1y-1|Ube1y1 - Y|Y A1 ubiquitin-activating enzyme, Chr Y protein-coding 102636450 Gm33512 - - 18|18 predicted gene, 33512 ncRNA 102637257 XR_882326 ENSMUSG00000100953 Gm28280 - - Y B|Y predicted gene 28280 ncRNA 100416218 Gm17975 - - 1|1 G3 ribosomal protein 10 pseudogene pseudo 100041231 Mm.425871 NR_027380 Gm3219 - - 14 B|14 B-cell CLL/lymphoma 7C pseudogene pseudo 53970 Mm.24308 NM_017395 ENSMUSG00000005774 Rfx5 - - 3 F2.1|3 40.74 cM regulatory factor X, 5 (influences HLA class II expression) protein-coding 116620 Bits1 - - 2 54.85 cM bitterness sensitivity 1 unknown 100042625 XR_865896 Gstp-ps Gm37208|Gm3934 - 1 H6|1 glutathione S-transferase, pi, pseudogene pseudo 100504381 Gm17276 - - 17|17 17.36 cM predicted gene, 17276 ncRNA 102637152 XR_385202 Gm34036 - - 17 A1|17 predicted gene, 34036 ncRNA 268905 Mm.206668 NM_183189 ENSMUSG00000056350 Krtap13-1 AA589563|KAP13.1 - 16|16 C3.3 keratin associated protein 13-1 protein-coding 387207 NR_029805 ENSMUSG00000065585 Mir211 Mirn211|mir-211|mmu-mir-211 - 7|7 C microRNA 211 ncRNA 218772 Mm.259318 NM_011243 ENSMUSG00000017491 Rarb A830025K23|Hap|Nr1b2 - 14 A2|14 7.08 cM retinoic acid receptor, beta protein-coding 218102 Mm.261642 4930558J22Rik - - 13|13 A3.1 RIKEN cDNA 4930558J22 gene unknown 18249 Mm.430771 NM_008754 ENSMUSG00000067684 Obp1a OBP-1a|OBP5 - X|X B odorant binding protein IA protein-coding 192198 Mm.443660 NM_138682 ENSMUSG00000049939 Lrrc4 MBAG1|NGL-2|NGL2|NLG-2|Nag14 - 6|6 A3.3 leucine rich repeat containing 4 protein-coding 21035 T(10;12)10Rl T10Rl - - reciprocal translocation, Chr 10 and 12, Russell 10 other 101055727 XR_875930 LOC101055727 - - 16 A1 transcription elongation factor B polypeptide 2 pseudogene pseudo 259074 Mm.334165 NM_147071 ENSMUSG00000046493 Olfr1352 MOR139-1 - 10|10 C1 olfactory receptor 1352 protein-coding 105243781 Mm.412895 LOC105243781 - - - uncharacterized LOC105243781 ncRNA 62656 D15Mit100 - - 15 19.26 cM DNA segment, Chr 15, Massachusetts Institute of Technology 100 unknown 105093 AA511260 - - - expressed sequence AA511260 unknown 331380 Gm14510 - - X|X A1.1 zinc finger protein 161 pseudogene pseudo 110996 Rap1a-ps3 - - - RAS related protein 1a, pseudogene 3 pseudo 320267 Mm.207261 NM_001033389 ENSMUSG00000026843 Fubp3 A330051M14Rik|AV006371|FBP3|Marta2 - 2|2 B far upstream element (FUSE) binding protein 3 protein-coding 105245260 XR_871949 Gm40738 - - 10 C2|10 predicted gene, 40738 ncRNA 633710 LOC633710 - - - Ig heavy chain variable region other 17190 Mm.22522 NM_013594 ENSMUSG00000024561 Mbd1 Cxxc3|PCM1 - 18 E2|18 50.7 cM methyl-CpG binding domain protein 1 protein-coding 108168530 XM_017318718 ENSMUSG00000096902 LOC108168530 - - Y C3 X-linked lymphocyte-regulated protein PM1-like protein-coding 19651 Mm.235580 NM_011250 ENSMUSG00000031666 Rbl2 PRB2|RBR-2|Rb2|p130 - 8 C4|8 44.25 cM RB transcriptional corepressor like 2 protein-coding 259111 Mm.223481 NM_147107 ENSMUSG00000051493 Olfr974 MOR171-1 - 9|9 A5.1 olfactory receptor 974 protein-coding 628813 Mm.390389 NM_001037932 ENSMUSG00000051452 Gm11437 AI463690 - 11|11 C predicted gene 11437 protein-coding 102637603 XR_379002 Gm34370 Gm45476 - 8 B2|8 predicted gene, 34370 ncRNA 61795 D2Mit417 - - 2 18.96 cM DNA segment, Chr 2, Massachusetts Institute of Technology 417 unknown 78335 Mm.482884 XR_378735 2810030D12Rik - - 8|8 A1.1 RIKEN cDNA 2810030D12 gene unknown 18656 Pgk1-ps1 Pgk-1ps1 - 16 C3.3|16 46.57 cM phosphoglycerate kinase 1, pseudogene 1 pseudo 13992 Mm.17964 NM_010158 ENSMUSG00000022332 Khdrbs3 Etle|SLM-2|Salp|Slm2|T-STAR - 15 D3|15 30.36 cM KH domain containing, RNA binding, signal transduction associated 3 protein-coding 100504539 Mm.461768 XR_870796 Gm20275 - - 9 B|9 32.21 cM predicted gene, 20275 ncRNA 61611 D9Mit239 - - 9 48.6 cM DNA segment, Chr 9, Massachusetts Institute of Technology 239 unknown 108168391 XR_001782498 Gm46633 - - 18 A1|18 predicted gene, 46633 ncRNA 60783 D3Mit39 - - 3 47.69 cM DNA segment, Chr 3, Massachusetts Institute of Technology 39 unknown 67958 Mm.292742 NM_026476 ENSMUSG00000032407 U2surp 2610101N10Rik|AU023006|Sr140 - 9|9 E3.3 U2 snRNP-associated SURP domain containing protein-coding 100042932 Gm14813 - - X C3|X predicted gene 14813 pseudo 667929 Mm.428480 NM_001177588 ENSMUSG00000030143 Gm8882 EG667929 - 6|6 G1 predicted gene 8882 protein-coding 108548 Iapls3-39 - - - intracisternal A particle, lymphocyte specific 3-39 other 108167909 XR_001780248 Gm46286 - - 11 B4|11 predicted gene, 46286 ncRNA 320754 E430034C17Rik - - 9|9 RIKEN cDNA E430034C17 gene protein-coding 116874 Hipp1 Hipp1a - 1 74.68 cM hippocampal weight 1 unknown 107483 Av1 Av-1 - - Abelson virus susceptibility 1 unknown 102638333 XR_381461 Gm34923 - - 12 B1|12 predicted gene, 34923 ncRNA 665994 Gm7882 EG665994 - 5 B3|5 apurinic/apyrimidinic endonuclease 2 pseudogene pseudo 108167572 XM_017313052 LOC108167572 - - 8 B3.3 proteinase-activated receptor 4-like protein-coding 102632766 XR_384359 Gm30754 - - 15 E3|15 predicted gene, 30754 ncRNA 105243857 Gm39588 - - 1|1 predicted gene, 39588 ncRNA 102640953 Gm36895 - - 5|5 predicted gene, 36895 ncRNA 16719 l17Wis10 l(17)-10Wi - - lethal, Chr 17, U Wisconsin 10 unknown 66096 Mm.206901 NM_001081108 ENSMUSG00000050552 Lamtor4 0910001L09Rik|AV006840 - 5|5 G2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 protein-coding 54631 Mm.437830 NM_019459 ENSMUSG00000006649 Nphs1 NephrinB|nephrin - 7|7 B1 nephrosis 1, nephrin protein-coding 17929 Mm.4103 NM_010867 ENSMUSG00000024049 Myom1 D430047A17Rik - 17|17 E1.3 myomesin 1 protein-coding 108168330 XR_001782168 Gm46587 - - 17 E4|17 predicted gene, 46587 ncRNA 53880 Mm.218759 NM_021545 Naip7 Birc1g|Naip-rs4B|Naip6 - 13 D1|13 NLR family, apoptosis inhibitory protein 7 protein-coding 108306 Mmv8 Mmv-8 - - MCF endogenous virus 8 other 100043392 Gm4409 - - 6 C3|6 predicted gene 4409 protein-coding 98210 D1Mgi59 - - - DNA Segment, Chr 1, Mouse Genome Informatics 59 protein-coding 100040219 Gm13182 - - 2|2 A1 LSM7 homolog, U6 small nuclear RNA associated pseudogene pseudo 258818 Mm.377707 NM_146821 ENSMUSG00000047545 Olfr629 MOR26-2 - 7|7 E3 olfactory receptor 629 protein-coding 77908 Mm.235619 NM_001101442 ENSMUSG00000078934 9230113P08Rik Pate13 - 9|9 A4 RIKEN cDNA 9230113P08 gene protein-coding 246166 L1Md-Gf82 GF82 - - L1 repeat, Gf subfamily, member 82 other 105244787 XR_868569 Gm40337 - - 5 G2|5 predicted gene, 40337 ncRNA 61135 D5Mit409 - - 5 85.17 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 409 unknown 67553 Mm.304899 NM_026231 ENSMUSG00000028018 Gstcd 4933434L15Rik - 3|3 G3 glutathione S-transferase, C-terminal domain containing protein-coding 16212 In(1)10Rk-d In(1)10Rk|In10Rk - - inversion, Chr 1, Roderick 10, distal other 105243297 XR_879226 Gm39258 - - 8 E1|8 predicted gene, 39258 ncRNA 107966127 Sox10-mcs9 DCHCS-3|MCS9 - - Sox10 multiple-species conserved sequence 9 biological-region 66579 2610007O09Rik - - 2|2 RIKEN cDNA 2610007O09 gene protein-coding 114725 Skull17 E12.1|L12.1|QTL-S12.1 - 12 2.59 cM skull morphology 17 unknown 100035497 Wg5 - - - weight gain in high growth mice 5 unknown 328572 Mm.258397 NM_177821 ENSMUSG00000055024 Ep300 A430090G16|A730011L11|KAT3B|p300|p300 HAT - 15|15 E1 E1A binding protein p300 protein-coding 102637338 Gm28940 - - 1|1 predicted gene 28940 ncRNA 100416003 Gm17863 - - X|X A3.1 predicted gene, 17863 pseudo 52566 D11Ertd142e - - 11 31.94 cM DNA segment, Chr 11, ERATO Doi 142, expressed unknown 105835 Mm.274943 NM_134091 ENSMUSG00000042303 Sgsm3 1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3 - 15|15 E1 small G protein signaling modulator 3 protein-coding 67039 Mm.46005 NM_027349 ENSMUSG00000010608 Rbm25 2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7 - 12|12 D1 RNA binding motif protein 25 protein-coding 26395 Mm.248907 NM_008927 ENSMUSG00000004936 Map2k1 MAPKK1|MEKK1|Mek1|Prkmk1 - 9 C|9 34.55 cM mitogen-activated protein kinase kinase 1 protein-coding 12404 Mm.4880 NM_019626 ENSMUSG00000031654 Cbln1 AI323299 - 8 C3|8 42.16 cM cerebellin 1 precursor protein protein-coding 258665 Mm.377627 NM_146670 ENSMUSG00000061961 Olfr815 MOR113-3 - 10|10 D3 olfactory receptor 815 protein-coding 105245464 XR_873248 Gm40913 - - 13 A3.3|13 predicted gene, 40913 ncRNA 105245211 XR_871835 Gm40696 - - 10 C1|10 predicted gene, 40696 ncRNA 102639006 XR_385503 Gm22146 - - 17 A3.3|17 predicted gene, 22146 ncRNA 74077 Mm.399527 4933411E02Rik - - 9|9 RIKEN cDNA 4933411E02 gene protein-coding 114913 Alcp25 Alcp5 - 1 2.08 cM alcohol preference locus 25, male specific unknown 667612 Ncr3-ps 1C7|EG667612|Gm8726|Ly117|Ncr3 - 17 B1|17 natural cytotoxicity triggering receptor 3, pseudogene pseudo 105052 D12Mgi44 AW743275 - - DNA Segment, Chr 12, Mouse Genome Informatics 44 unknown 83813 Mm.28874 NM_031880 ENSMUSG00000001583 Tnk1 Kos1|Tnk1a|Tnk1b - 11|11 B3 tyrosine kinase, non-receptor, 1 protein-coding 100039474 Gm15452 - - 1|1 A1 CDC28 protein kinase regulatory subunit 2 pseudogene pseudo 102634469 XR_388771 Gm32046 - - 11 B3|11 predicted gene, 32046 ncRNA 102634751 XR_381220 Gm32258 - - 12 A1.1|12 predicted gene, 32258 ncRNA 546157 Mm.380145 NM_001033983 ENSMUSG00000074123 7420426K07Rik - - 9|9 E3.3 RIKEN cDNA 7420426K07 gene protein-coding 329056 Mm.238105 NR_152130 ENSMUSG00000094707 A830019P07Rik - - 19|19 C2 RIKEN cDNA A830019P07 gene ncRNA 108783650 LOC108783650 - - - Amh promoter region biological-region 108168681 XM_017318912 ENSMUSG00000094303 LOC108168681 - - - PRAME family member 8-like protein-coding 14469 Mm.24038 NM_010260 ENSMUSG00000028270 Gbp2 - - 3 H1|3 66.69 cM guanylate binding protein 2 protein-coding 258148 NM_001305433 ENSMUSG00000111273 Olfr789 MOR111-13|MOR111-9P|Olfr789-ps1 - 10|10 D3 olfactory receptor 789 protein-coding 100417925 Gm18901 - - 5|5 C1 DnaJ (Hsp40) homolog, subfamily A, member 3 pseudogene pseudo 108340 Mtv31 Mtv-31 - - mammary tumor virus locus 31 other 105245705 Anxa11os Gm9872 - 14|14 annexin A11, opposite strand ncRNA 13049 cw thd - - curly whiskers unknown 14129 Mm.150 NM_010186 ENSMUSG00000015947 Fcgr1 AI323638|AV092959|CD64|FcgammaRI|IGGHAFC - 3 F2.1|3 41.72 cM Fc receptor, IgG, high affinity I protein-coding 107452 Hld - - - hippocampal lamination defect unknown 226278 Mm.377241 NM_201615 ENSMUSG00000045052 Prlhr Gm339|Gpr10|Gr3|Prrpr - 19|19 D3 prolactin releasing hormone receptor protein-coding 114155 Taste3 - - - taste-saccharin preference 3 unknown 56453 Mm.206934 NM_019709 ENSMUSG00000031835 Mbtps1 0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091 - 8|8 E1 membrane-bound transcription factor peptidase, site 1 protein-coding 102634240 XR_379591 Gm31872 - - 9 D|9 predicted gene, 31872 ncRNA 320159 Mm.187372 NM_177087 ENSMUSG00000045761 Togaram2 4632412N22Rik|Fam179a - 17|17 E1.3 TOG array regulator of axonemal microtubules 2 protein-coding 62093 D11Mit14 - - 11 62.4 cM DNA segment, Chr 11, Massachusetts Institute of Technology 14 unknown 102635759 XR_872806 ENSMUSG00000113278 Gm33016 - - 12 C3|12 predicted gene, 33016 ncRNA 100417591 Gm18703 - - 10|10 A1 ring finger and WD repeat domain 2 pseudogene pseudo 258531 Mm.172578 NM_146538 ENSMUSG00000056959 Olfr315 MOR278-1 - 11|11 B1.3 olfactory receptor 315 protein-coding 108168519 Gm46709 - - Y C2|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 55981 Mm.139905 NM_018889 ENSMUSG00000079469 Pigb Pig-b - 9|9 D phosphatidylinositol glycan anchor biosynthesis, class B protein-coding 102421 AA589408 - - - expressed sequence AA589408 unknown 258558 Mm.377567 NM_146565 ENSMUSG00000110621 Olfr837 MOR152-2 - 9|9 A2 olfactory receptor 837 protein-coding 105243356 Gm39303 - - 9|9 predicted gene, 39303 ncRNA 105245082 XR_871319 Gm40582 - - 9 F3|9 predicted gene, 40582 ncRNA 100216537 NR_030703 ENSMUSG00000065126 Snord104 - - 11 E1|11 small nucleolar RNA, C/D box 104 snoRNA 109279945 LOC109279945 Mm398 - - VISTA enhancer mm398 biological-region 102635538 Mm.415041 XR_391188 Gm32846 Gm45036 - 7 A2|7 predicted gene, 32846 ncRNA 100124677 Trbv13-3 Gm16777|Tcrb-V8|Tcrb-V8.1 - 6 19.21 cM|6 B1 T cell receptor beta, variable 13-3 other 102467591 n-TUtca1 n-Ts1 - - nuclear encoded tRNA selenocysteine 1 (anticodon TCA) tRNA 100125283 Vmn2r-ps19 - - 4|4 E1 vomeronasal 2, receptor, pseudogene 19 pseudo 102465149 NR_105749 ENSMUSG00000098612 Mir6241 Gm27302|mmu-mir-6241 - 14|14 E4 microRNA 6241 ncRNA 257790 Olfr927-ps1 EG257790|GA_x5J8B7W60AJ-719102-719883|Gm5011 - 9 A5.1|9 olfactory receptor 927, pseudogene 1 pseudo 269941 Mm.333916 NM_001081163 ENSMUSG00000032640 Chsy1 mKIAA0990 - 7|7 C chondroitin sulfate synthase 1 protein-coding 105670 Mm.280068 NM_134083 ENSMUSG00000022106 Rcbtb2 2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2 - 14|14 D3 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 protein-coding 102640754 XR_001784531 LOC102640754 - - 4 B3 uncharacterized LOC102640754 ncRNA 108169108 Gm43044 - - 5 C2|5 predicted gene 43044 pseudo 53733 D17Aus9 D17Au9 - - DNA segment, Chr 17, Austin 9 unknown 50795 Mm.28638 NM_015825 ENSMUSG00000040666 Sh3bgr 5430437A18Rik - 16|16 C4 SH3-binding domain glutamic acid-rich protein protein-coding 56441 Mm.10305 NM_019750 ENSMUSG00000079334 Nat6 AI225910|Fus2 - 9 F1|9 58.18 cM N-acetyltransferase 6 protein-coding 100035076 W6q6 - - - weight 6 weeks QTL 6 unknown 110263 Tel9q - - - telomeric sequence, Chr 9, q arm protein-coding 20867 Mm.258633 NM_016737 ENSMUSG00000024966 Stip1 Hop|Sti1|p60 - 19|19 A stress-induced phosphoprotein 1 protein-coding 102636414 XR_381564 Gm38487 - - 12 B3|12 predicted gene, 38487 ncRNA 666761 Gm12482 - - 4 B2|4 nascent polypeptide-associated complex alpha polypeptide pseudogene pseudo 52154 D11Ggc2e - - - DNA segment, Chr 11, G. Consalez 2, expressed unknown 108168479 XR_001782832 Gm46685 - - X A1.1|X predicted gene, 46685 ncRNA 67862 Mm.358708 NM_024210 ENSMUSG00000020441 2310033P09Rik Mmtag2 - 11|11 B1.3 RIKEN cDNA 2310033P09 gene protein-coding 73895 Mm.318535 NR_045059 ENSMUSG00000075042 4930431P03Rik - - 14|14 C1 RIKEN cDNA 4930431P03 gene ncRNA 102633528 Gm31335 - - Y|Y predicted gene, 31335 protein-coding 20450 Mm.4954 NM_009181 ENSMUSG00000025789 St8sia2 AI323367|ST8SiaII|STX|Siat8b - 7|7 D1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 74713 4930519E07Rik - - 5|5 RIKEN cDNA 4930519E07 gene protein-coding 94047 Mm.23088 NM_033567 ENSMUSG00000094626 Tmem121b AW048664|Cecr6 - 6 F1|6 56.95 cM transmembrane protein 121B protein-coding 442795 Mm.332328 NR_152157 ENSMUSG00000055944 E130018O15Rik - - 5|5 B2 RIKEN cDNA E130018O15 gene ncRNA 664991 Gm12917 - - 4|4 D2.2 PRELI domain containing 1 pseudogene pseudo 20382 Mm.21841 NM_011358 ENSMUSG00000034120 Srsf2 D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2 - 11 E2|11 81.49 cM serine/arginine-rich splicing factor 2 protein-coding 105244599 Gm40189 - - 3|3 predicted gene, 40189 pseudo 17171 Mm.425994 NM_008552 ENSMUSG00000068037 Mas1 Mas-1|MasR|Mgra - 17 A1|17 8.69 cM MAS1 oncogene protein-coding 105243448 XR_001779215 Gm26849 - - 9 D|9 predicted gene, 26849 ncRNA 14960 Mm.235338 NM_010378 ENSMUSG00000036594 H2-Aa Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1 - 17 B1|17 17.98 cM histocompatibility 2, class II antigen A, alpha protein-coding 62570 D12Mit143 - - 12 36.36 cM DNA segment, Chr 12, Massachusetts Institute of Technology 143 unknown 72615 Mm.290628 NM_028301 ENSMUSG00000022515 Anks3 2700067D09Rik|C81345|mKIAA1977 - 16 A1|16 2.48 cM ankyrin repeat and sterile alpha motif domain containing 3 protein-coding 382871 Gm5203 EG382871 - 14|14 B non-SMC element 2 homolog (MMS21, S. cerevisiae) pseudogene pseudo 102640636 Gm36652 - - 10|10 predicted gene, 36652 pseudo 258513 Mm.261779 NM_146520 ENSMUSG00000052508 Olfr536 MOR252-1|MOR252-4 - 7|7 F4 olfactory receptor 536 protein-coding 102640130 XR_383599 Gm36271 - - 14 D3|14 predicted gene, 36271 ncRNA 319833 9430072B17Rik - - 9|9 RIKEN cDNA 9430072B17 gene protein-coding 78160 Mm.399194 4930442G15Rik - - 9|9 B RIKEN cDNA 4930442G15 gene protein-coding 100862261 Mm.425173 NM_001357589 ENSMUSG00000093996 Fam205a3 Fam205a|Gm21598 - 4 A5|4 family with sequence similarity 205, member A3 protein-coding 70964 Mm.487737 4931418L13Rik - - - RIKEN cDNA 4931418L13 gene protein-coding 71137 Mm.79070 NM_027689 ENSMUSG00000020037 Rfx4 4933412G19Rik|NYD-sp10 - 10|10 C1 regulatory factor X, 4 (influences HLA class II expression) protein-coding 237806 Mm.264210 NM_001099633 ENSMUSG00000056752 Dnah9 9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357 - 11 B3|11 40.53 cM dynein, axonemal, heavy chain 9 protein-coding 224794 Mm.255971 NM_199016 ENSMUSG00000023961 Enpp4 4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90 - 17|17 B3 ectonucleotide pyrophosphatase/phosphodiesterase 4 protein-coding 75195 Mm.35119 4930532J02Rik - - 3|3 RIKEN cDNA 4930532J02 gene protein-coding 75187 Mm.410810 NR_131022 ENSMUSG00000110037 4930543N07Rik Gm45685 - 7|7 F4 RIKEN cDNA 4930543N07 gene ncRNA 628850 XR_001780508 6030426L16Rik - - 12|12 A1.3 RIKEN cDNA 6030426L16 gene unknown 53868 Mm.26994 NM_016899 ENSMUSG00000008601 Rab25 AV012978 - 3|3 F1 RAB25, member RAS oncogene family protein-coding 105243581 Gm39466 - - 9|9 predicted gene, 39466 ncRNA 67141 Mm.197520 NM_025995 ENSMUSG00000019773 Fbxo5 2510044I10Rik|C85305|Emi1|Fbxo31 - 10|10 A1 F-box protein 5 protein-coding 57776 Mm.29729 NM_021324 ENSMUSG00000030428 Ttyh1 4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty - 7|7 A1 tweety family member 1 protein-coding 18150 Mm.1406 NM_008723 ENSMUSG00000056209 Npm3 Nub1 - 19 C3|19 38.75 cM nucleoplasmin 3 protein-coding 667422 XR_378944 ENSMUSG00000062458 Gm8623 EG667422 - 8|8 B1.1 predicted gene 8623 pseudo 77985 B230114A03Rik - - 16|16 RIKEN cDNA B230114A03 gene protein-coding 69863 Mm.5540 NM_025782 ENSMUSG00000038172 Ttc39b 1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585 - 4|4 C3 tetratricopeptide repeat domain 39B protein-coding 105244304 XR_866758 Gm14100 - - 2 F2|2 65.18 cM predicted gene 14100 ncRNA 74562 Mm.159241 NM_001136556 ENSMUSG00000013338 Fer1l4 9130402C12Rik - 2|2 H1 fer-1-like 4 (C. elegans) protein-coding 61571 DXMit182 - - X 75.14 cM DNA segment, Chr X, Massachusetts Institute of Technology 182 unknown 19479 Rb(12.13)15Tu Rb15Tu - - Robertsonian translocation, Chr 12 and 13, Tubingen 15 other 77245 9330199C07Rik - - 14|14 RIKEN cDNA 9330199C07 gene protein-coding 240117 Gm4946 EG240117 - 17|17 C myo-inositol 1-phosphate synthase A1 pseudogene pseudo 102238517 LOC102238517 - - 1 H4 polymerase (RNA) II (DNA directed) polypeptide K pseudogene pseudo 102467405 n-TVcac6 n-Tv14 - 1 H3|1 nuclear encoded tRNA valine 6 (anticodon CAC) tRNA 629364 Gm16372 EG383189 - 12|12 A1.3 actin related protein 2/3 complex, subunit 5 pseudogene pseudo 100502742 Mm.217880 NR_045709 ENSMUSG00000097318 1700007L15Rik linc-Iqcg|linc1609 - 16|16 B3 RIKEN cDNA 1700007L15 gene ncRNA 258507 Mm.377543 NM_146514 ENSMUSG00000064121 Olfr96 MOR121-1 - 17|17 B1 olfactory receptor 96 protein-coding 61244 D1Mit288 - - 1 63.51 cM DNA segment, Chr 1, Massachusetts Institute of Technology 288 unknown 433748 Llph-ps1 Gm12952 - 4|4 D1 LLP homolog, pseudogene 1 pseudo 434373 Gm5611 EG434373 - 9|9 A2 nucleophosmin 1 pseudogene pseudo 399600 7030407E18Rik - - - RIKEN cDNA 7030407E18 gene protein-coding 17168 Mm.263161 NM_181569 ENSMUSG00000020289 Nprl3 Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE - 11 A4|11 18.83 cM nitrogen permease regulator-like 3 protein-coding 208166 Mm.451852 NM_001005854 ENSMUSG00000053182 Gm609 Gm1749|isec1 - 16|16 B5 predicted gene 609 protein-coding 102636442 Gm33505 - - X|X predicted gene, 33505 pseudo 72159 Gm9726 2610022K04Rik-ps|EG72159 - 12|12 D3 LysM, putative peptidoglycan-binding, domain containing 1 pseudogene pseudo 76007 Mm.31417 NM_029498 ENSMUSG00000021945 Zmym2 5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198 - 14|14 C3 zinc finger, MYM-type 2 protein-coding 97477 C87033 - - - expressed sequence C87033 unknown 108167515 Gm45700 - - 7 F3|7 60S ribosomal protein L35 pseudogene pseudo 382969 Gm5210 EG382969 - 15|15 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 108168132 n-TDgtc11 Trnad-guc|n-Td11 - 13 A3.1|13 nuclear encoded tRNA aspartic acid 11 (anticodon GTC) tRNA 493042 Cfbw5 - - 13 30.06 cM cystic fibrosis body weight 5 unknown 448850 Mm.379733 NM_001005223 ENSMUSG00000020526 Znhit3 Myohd1|TRIP-3|Trip3 - 11|11 C zinc finger, HIT type 3 protein-coding 74760 Mm.281969 NM_144538 ENSMUSG00000024663 Rab3il1 1200014K04Rik|AI115013|C76746|Rab3ail1 - 19|19 A RAB3A interacting protein (rabin3)-like 1 protein-coding 667974 Gm8906 - - 5 A1|5 predicted gene 8906 pseudo 110120535 LOC110120535 - - - VISTA enhancer mm1114 biological-region 102635763 XR_376898 Gm33017 - - 5 B3|5 predicted gene, 33017 ncRNA 105244011 XR_865733 Gm39704 - - 1 H3|1 predicted gene, 39704 ncRNA 78225 4930570D08Rik - - X|X RIKEN cDNA 4930570D08 gene protein-coding 75768 Mm.212701 NR_130160 ENSMUSG00000097619 4833422M21Rik 4933406G12Rik - 15|15 F1 RIKEN cDNA 4833422M21 gene ncRNA 269955 Mm.474502 NM_173445 ENSMUSG00000038930 Rccd1 5830436H09|E430018M08Rik - 7|7 D2 RCC1 domain containing 1 protein-coding 100417439 Gm13535 - - 2|2 C1.1 cytoskeleton associated protein 2 pseudogene pseudo 66532 Mm.45888 NM_025620 ENSMUSG00000040121 Rep15 2210417D09Rik - 6|6 G3 RAB15 effector protein protein-coding 27476 20T - - - DNA segment, 20T unknown 258886 Mm.484167 NM_146884 ENSMUSG00000109219 Olfr1299 MOR248-8 - 2|2 E3 olfactory receptor 1299 protein-coding 68553 Mm.28854 NM_026763 ENSMUSG00000032572 Col6a4 1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6 - 9|9 F1 collagen, type VI, alpha 4 protein-coding 100126034 Mm.394282 XR_001778605 Gm10644 - - 8 C2|8 predicted gene 10644 unknown 402723 E130104P22Rik - - 13|13 RIKEN cDNA E130104P22 gene protein-coding 625311 Gm6576 EG625311 - 15|15 B1 ribosomal protein S2 pseudogene pseudo 224694 Mm.170029 NM_207541 ENSMUSG00000003929 Zfp81 AA409460|AA409461|C330034P10Rik|D330034E10Rik|Hszfp36|KRAB13|Zfp78 - 17|17 B1 zinc finger protein 81 protein-coding 105246458 XR_877467 Gm41744 - - 18 E1|18 predicted gene, 41744 ncRNA 12057 Mm.56987 NM_007538 ENSMUSG00000058831 Opn1sw AW551857|Bcp - 6|6 A3.3 opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) protein-coding 449631 Mm.236868 NR_002173 ENSMUSG00000064966 Snord15b Gm5775|Rnu15-b|Rnu15b|U15B - 7 E1|7 small nucleolar RNA, C/D box 14B snoRNA 102640696 LOC102640696 - - 13 B3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 72112 Mm.46317 NM_028104 ENSMUSG00000027317 Ppp1r14d 2010107K19Rik|GBPI-1|Ppp1r14 - 2|2 E5 protein phosphatase 1, regulatory (inhibitor) subunit 14D protein-coding 15571 Mm.390167 NM_010487 ENSMUSG00000003410 Elavl3 2600009P04Rik|Huc|PLE21|mHuC - 9 A3|9 8.07 cM ELAV like RNA binding protein 3 protein-coding 114741 Mm.21662 NM_033618 ENSMUSG00000035726 Supt16 Cdc68|Fact140|Spt16|Supt16h - 14 C2|14 26.83 cM suppressor of Ty 16 protein-coding 102637026 XR_389297 Gm33938 - - 5 C3.3|5 predicted gene, 33938 ncRNA 237362 Mm.131297 NM_001177511 ENSMUSG00000020090 Npffr1 Gm236|Gpr147|NPFF1|NPFF1R|OT7T022 - 10|10 B4 neuropeptide FF receptor 1 protein-coding 105244048 XR_865833 Gm39731 - - 1 H5|1 predicted gene, 39731 ncRNA 17724 mt-Rnr1 - - - s-rRNA rRNA 546049 Mm.358733 NM_001024728 ENSMUSG00000065952 C330021F23Rik 2610027C06Rik|Rps23r1|Rps23rg1 - 8|8 A1.1 RIKEN cDNA C330021F23 gene protein-coding 102467296 n-TQttg4 n-Tq14 - 13 A3.1|13 nuclear encoded tRNA glutamine 4 (anticodon TTG) tRNA 28150 D5Ucla2 - - - DNA segment, Chr 5, University of California at Los Angeles 2 unknown 27996 Mm.4339 D2Wsu85e - - - DNA segment, Chr 2, Wayne State University 85, expressed unknown 258073 Olfr842-ps1 MOR154-2P|MOR154-3_p - 9|9 A2 olfactory receptor 842, pseudogene 1 pseudo 100036133 Ath19 - - 11 71.83 cM atherosclerosis 19 unknown 320418 4732465E10Rik - - 12|12 RIKEN cDNA 4732465E10 gene protein-coding 102637333 XR_378362 Gm34172 - - 7 E1|7 predicted gene, 34172 ncRNA 234501 Gm4891 EG234501 - 8|8 C2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 622384 Fabp5l2 EG622384 - 18|18 A1 fatty acid binding protein 5-like 2 pseudo 105247314 LOC105247314 - - - H-2 class I histocompatibility antigen, Q9 alpha chain-like pseudo 77002 2200002A13Rik - - - RIKEN cDNA 2200002A13 gene protein-coding 108381 Srev4 Srev-4 - - SWR/J-RF/J ecotropic provirus 4 other 102636640 XR_386608 Gm33649 - - 19 B|19 predicted gene, 33649 ncRNA 228361 Mm.436667 NM_172669 ENSMUSG00000040506 Ambra1 2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736 - 2|2 E1 autophagy/beclin 1 regulator 1 protein-coding 60709 D6Mit47 - - 6 12.88 cM DNA segment, Chr 6, Massachusetts Institute of Technology 47 unknown 72975 2900063K03Rik - - 5|5 RIKEN cDNA 2900063K03 gene protein-coding 107805 Pick5 - - - protein that interacts with C kinase 5 protein-coding 20823 Mm.10508 NM_009278 ENSMUSG00000068882 Ssb SS-B - 2 C2|2 40.95 cM Sjogren syndrome antigen B protein-coding 105243714 XR_878213 Gm39530 - - X D|X predicted gene, 39530 ncRNA 259142 Olfr1542-ps1 MOR0-8P - 10|10 D3 olfactory receptor 1542, pseudogene 1 pseudo 100416165 Gm17951 - - 3|3 D ribosomal protein 10 pseudogene pseudo 68680 Mm.36758 NM_026808 ENSMUSG00000022215 Fitm1 1110028A07Rik|AV010547|Cg10671|Fit1 - 14|14 C3 fat storage-inducing transmembrane protein 1 protein-coding 62711 D17Mit158 - - 17 29.6 cM DNA segment, Chr 17, Massachusetts Institute of Technology 158 unknown 102640478 XR_377123 Gm36528 - - 5 G2|5 predicted gene, 36528 ncRNA 111635 Ms6 MMS6 - - minisatellites detected by probe MMS6 other 100040225 Gm20832 - - Y|Y B Sycp3 like Y-linked pseudogene pseudo 94214 Mm.153429 NM_052994 ENSMUSG00000058297 Spock2 AA407235|Gcap26|mKIAA0275 - 10|10 B4 sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2 protein-coding 100125261 Trbj2-7 Gm16807 - 6 19.7 cM|6 B1 T cell receptor beta joining 2-7 other 116850 A430106F20Rik - - 7|7 RIKEN cDNA A430106F20 gene protein-coding 100042054 Mm.443041 XR_874114 Gm3194 - - 14 A1|14 predicted gene 3194 protein-coding 21894 Mm.208601 NM_011602 ENSMUSG00000028465 Tln1 Tln - 4|4 A5 talin 1 protein-coding 100313945 Mm.405977 Gm14866 - - X C2|X 43.72 cM predicted gene 14866 ncRNA 17001 Mm.245151 NM_008521 ENSMUSG00000020377 Ltc4s - - 11|11 B1.3 leukotriene C4 synthase protein-coding 12877 Mm.273122 NM_007755 ENSMUSG00000025586 Cpeb1 AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1 - 7|7 D3 cytoplasmic polyadenylation element binding protein 1 protein-coding 677448 Gm16385 Actl8|EG545167 - 16 C1.3|16 actin-like 8 pseudo 110664 Tel14p - - - telomeric sequence, Chr 14, centromere end protein-coding 102640395 XR_881973 Gm36464 - - 7 B2|7 predicted gene, 36464 ncRNA 102636857 Gm28916 - - Y|Y predicted gene 28916 pseudo 100416093 Gm17075 - - 2|2 E1 sorting nexin 25 pseudogene pseudo 623331 D16Ertd727e EG623331|Gm6417 - 16 A2|16 10.09 cM cell division cycle associated 7 pseudogene pseudo 108167834 Gm46243 - - 1 E1.1|1 predicted gene, 46243 pseudo 27009 D17Mit232.1 D17Mit232 - 17 19.16 cM DNA Segment, Chr 17, Massachusetts Institute of Technology 232.1 unknown 14428 Mm.57149 NM_010254 ENSMUSG00000020793 Galr2 mGalR - 11 E2|11 81.1 cM galanin receptor 2 protein-coding 27205 Mm.89918 NM_013723 ENSMUSG00000025608 Podxl AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1 - 6 A3.3|6 12.57 cM podocalyxin-like protein-coding 259047 Mm.223428 NM_147045 ENSMUSG00000044120 Olfr683 MOR40-1 - 7|7 E3 olfactory receptor 683 protein-coding 100035014 Fmgty14 - - 17 12.53 cM femur geometry 14 unknown 100381255 Mm.39786 BC026863 - - - cDNA sequence BC026863 protein-coding 102634395 XR_373877 Gm31987 - - 1 H6|1 predicted gene, 31987 ncRNA 100042045 Gm3637 - - 14|14 A1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo 268759 Mm.12148 NM_001004155 ENSMUSG00000044551 9930012K11Rik - - 14|14 D2 RIKEN cDNA 9930012K11 gene protein-coding 102637909 Gm34604 - - 2|2 predicted gene, 34604 ncRNA 100503744 Gm19867 - - 16 C3.3|16 45.89 cM 40S ribosomal protein S10-like pseudo 110120366 LOC110120366 - - - VISTA enhancer mm119 biological-region 73421 Cntrobos 1700067G03Rik - 11|11 centrobin, centrosomal BRCA2 interacting protein, opposite strand protein-coding 258593 Mm.377583 NM_146600 ENSMUSG00000094493 Olfr700 MOR283-4 - 7|7 E3 olfactory receptor 700 protein-coding 100038645 Mm.393716 Gm10699 - - - predicted gene 10699 protein-coding 381628 Mm.291148 NM_001014394 ENSMUSG00000067642 Adgrf3 Gm1041|Gpr113|Pgr23 - 5|5 B1 adhesion G protein-coupled receptor F3 protein-coding 11430 Mm.356689 NM_015729 ENSMUSG00000020777 Acox1 AOX|Acox|D130055E20Rik|Paox - 11|11 E2 acyl-Coenzyme A oxidase 1, palmitoyl protein-coding 69469 Mm.481120 NM_001081312 ENSMUSG00000078577 Tmco2 1700028F16Rik - 4|4 D2.2 transmembrane and coiled-coil domains 2 protein-coding 100502981 Gm19486 - - 18|18 31.48 cM predicted gene, 19486 protein-coding 107373 Mm.1643 NM_026640 ENSMUSG00000024691 Fam111a 4632417K18Rik|AW413625 - 19 A|19 family with sequence similarity 111, member A protein-coding 100041812 Gm20888 - - Y|Y predicted gene, 20888 protein-coding 105246963 Gm42153 - - 5|5 predicted gene, 42153 ncRNA 100861728 Gm21168 - - 5 B1|5 ribosome biogenesis regulatory protein homolog pseudo 60344 Mm.130769 NM_021716 ENSMUSG00000075324 Fign fi|fidget - 2 C1.3|2 37.19 cM fidgetin protein-coding 100503842 Mm.297636 NR_152252 ENSMUSG00000100017 2410022M11Rik - - 14|14 C3 RIKEN cDNA 2410022M11 gene ncRNA 17128 Mm.100399 NM_008540 ENSMUSG00000024515 Smad4 AW743858|D18Wsu70e|DPC4|Madh4 - 18 E2|18 49.51 cM SMAD family member 4 protein-coding 100035863 Manln13 - - 13 7.34 cM mandible length 13 unknown 228071 Mm.27120 NM_175465 ENSMUSG00000042272 Sestd1 1500031J16Rik|A930010O20|Solo/Trio8 - 2|2 C3 SEC14 and spectrin domains 1 protein-coding 105244464 XR_001783859 Gm40067 - - 3 E1|3 predicted gene, 40067 ncRNA 381334 Mm.482878 NM_199366 ENSMUSG00000094651 Gal3st2 GP3ST|Gm988 - 1|1 D galactose-3-O-sulfotransferase 2 protein-coding 53660 D2Mc1 D2McC1 - - DNA segment, Chr 2, McClelland 1 unknown 12952 Mm.26237 NM_007771 ENSMUSG00000020038 Cry1 AU020726|AU021000|Phll1 - 10 C1|10 41.63 cM cryptochrome 1 (photolyase-like) protein-coding 105243708 XR_878181 Gm39528 - - X C3|X predicted gene, 39528 ncRNA 105245519 Gm40965 - - 13|13 predicted gene, 40965 ncRNA 100862433 XM_003688749 LOC100862433 - - - 40S ribosomal protein S16 protein-coding 381598 Mm.359054 NM_001024708 ENSMUSG00000071793 2610005L07Rik 2810038F24Rik|6720476A01Rik - 8|8 A2 cadherin 11 pseudogene pseudo 211896 Mm.288805 NM_144804 ENSMUSG00000027173 Depdc7 AV216087 - 2|2 E2 DEP domain containing 7 protein-coding 100415978 Gm17849 - - 10|10 D1 predicted gene, 17849 pseudo 102027 Mm.324125 AI314604 - - - expressed sequence AI314604 protein-coding 105246177 Gm41511 - - 16|16 predicted gene, 41511 ncRNA 116761 Drb8 - - - dopamine receptor binding 8 unknown 18054 Mm.236225 NM_008694 ENSMUSG00000032484 Ngp bectenecin - 9|9 F2 neutrophilic granule protein protein-coding 105245497 Gm40945 - - 13|13 predicted gene, 40945 ncRNA 320494 Mm.376662 9330162L04Rik - - 6|6 RIKEN cDNA 9330162L04 gene protein-coding 353188 Mm.269223 NM_153397 ENSMUSG00000037437 Adam32 - - 8|8 A2 a disintegrin and metallopeptidase domain 32 protein-coding 319953 Mm.235007 NM_178869 ENSMUSG00000022442 Ttll1 6330444E16Rik|AV014541 - 15|15 E1 tubulin tyrosine ligase-like 1 protein-coding 100039548 Mm.399109 XR_389622 4930412E21Rik Gm2305 - 3 A3|3 RIKEN cDNA 4930412E21 gene ncRNA 554162 AA681502 - - - expressed sequence AA681502 protein-coding 102634965 XR_391948 ENSMUSG00000100647 Gm29027 - - Y B|Y predicted gene 29027 ncRNA 72084 Mm.37613 NM_024464 ENSMUSG00000023791 Pigx 2010319C14Rik|PIG-X - 16|16 B2 phosphatidylinositol glycan anchor biosynthesis, class X protein-coding 105245133 XR_871583 Gm40626 - - 10 B1|10 predicted gene, 40626 ncRNA 109279996 LOC109279996 Mm832 - - VISTA enhancer mm832 biological-region 74306 Mm.87419 NM_183103 ENSMUSG00000049719 Prss46 1700112C13Rik|79H19B|Tessp6 - 9 F2|9 60.79 cM protease, serine 46 protein-coding 102638662 XR_880618 LOC102638662 - - X A2 uncharacterized LOC102638662 ncRNA 665602 Gm7708 EG665602 - 15|15 D1 phosphoglycerate mutase 1 pseudogene pseudo 102634922 XR_373659 Gm32391 - - 1 H2.2|1 predicted gene, 32391 ncRNA 100504360 Mm.16927 NM_001033188 D730003I15Rik AU020850 - 1|1 H6 RIKEN cDNA D730003I15 gene ncRNA 100035475 Mofp2 Mof2 - - mesenteric and omental fat pad weight 2 unknown 114570 Mm.25168 NM_053250 ENSMUSG00000023968 Crip3 TLP|TLP-A|TLP-B|Tlmp - 17|17 C cysteine-rich protein 3 protein-coding 258909 Mm.377746 NM_146907 ENSMUSG00000096554 Olfr1282 MOR248-16|MOR248-2|Olfr1557 - 2|2 E3 olfactory receptor 1282 protein-coding 105246182 XR_876345 Gm41516 - - 17 A1|17 predicted gene, 41516 ncRNA 75579 Mm.436708 NR_040418 2310034G01Rik - - 19|19 C3 RIKEN cDNA 2310034G01 gene ncRNA 102634642 XR_882250 Gm32178 - - 7 D3|7 predicted gene, 32178 ncRNA 258055 Mm.377339 NM_001011814 ENSMUSG00000050366 Olfr524 MOR103-14P - 7|7 F4 olfactory receptor 524 protein-coding 102633580 Gm31371 - - 8|8 predicted gene, 31371 protein-coding 53050 O20SP6 - - - DNA segment, O20SP6 unknown 108618 Iap5rb16 - - - intracisternal A-type particle, U5 region, SINE repeat b-16 other 102641654 LOC102641654 - - - glycine cleavage system H protein, mitochondrial protein-coding 85102 D7Mit339 - - - DNA segment, Chr 7, Massachusetts Institute of Technology 339 unknown 63018 D11Mit119 - - 11 51.23 cM DNA segment, Chr 11, Massachusetts Institute of Technology 119 unknown 666473 Gm12430 - - 4|4 B1 microfibrillar-associated protein 1B pseudogene pseudo 18733 Mm.326531 NM_011095 ENSMUSG00000058818 Pirb Gp91|LIR-3|Lilrb3|PIR-B - 7 A1|7 2.14 cM paired Ig-like receptor B protein-coding 111534 Xmv65 Xmv-65 - - xenotropic murine leukemia virus 65 other 72873 Mm.440428 NM_028377 ENSMUSG00000057265 Bbof1 2900006K08Rik|AI427784|Ccdc176 - 12|12 D1 basal body orientation factor 1 protein-coding 102637881 Gm34580 - - X|X predicted gene, 34580 protein-coding 277666 Mm.332023 NM_001085412 ENSMUSG00000046435 Gm13078 - - 4|4 E1 predicted gene 13078 protein-coding 85055 D1Mit23 - - 1 38.58 cM DNA segment, Chr 1, Massachusetts Institute of Technology 23 unknown 102636273 Gm28819 - - Y|Y predicted gene 28819 ncRNA 105511 Mm.32231 NM_001164485 ENSMUSG00000078127 Fam170b 4922501K12Rik|AI449756 - 14|14 B family with sequence similarity 170, member B protein-coding 109614 Es30 - - - esterase 30 protein-coding 20184 Mm.259301 NM_011307 ENSMUSG00000025878 Uimc1 9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110 - 13|13 B1 ubiquitin interaction motif containing 1 protein-coding 381196 Mm.297789 NM_001033447 ENSMUSG00000071691 Gm960 TOPOVIBL|Top6bl - 19|19 A predicted gene 960 protein-coding 18741 Mm.246804 NM_011098 ENSMUSG00000028023 Pitx2 9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg - 3 G3|3 57.84 cM paired-like homeodomain transcription factor 2 protein-coding 61337 D3Mit201 - - 3 80.58 cM DNA segment, Chr 3, Massachusetts Institute of Technology 201 unknown 21183 T(4;5)46H T46H - - reciprocal translocation, Chr 4 and 5, Harwell 46 other 76359 Mm.449908 2610028D06Rik - - 9|9 RIKEN cDNA 2610028D06 gene protein-coding 102638464 Gm35022 - - 1|1 predicted gene, 35022 ncRNA 387213 NR_029828 ENSMUSG00000065415 Mir217 Mirn217|mir-217|mmu-mir-217 - 11 A3.3|11 microRNA 217 ncRNA 61451 D6Mit135 - - 6 63.1 cM DNA segment, Chr 6, Massachusetts Institute of Technology 135 unknown 71491 8430418B16Rik - - 15|15 RIKEN cDNA 8430418B16 gene protein-coding 791304 Gm15352 HSA-B - 8 A1.1|8 CD24a antigen pseudogene pseudo 100416463 Gm18126 - - 7|7 A3 zinc finger protein 51 pseudogene pseudo 105246073 XR_875921 Gm41421 - - 16 A1|16 predicted gene, 41421 ncRNA 258838 Mm.377715 NM_146841 ENSMUSG00000073946 Olfr617 MOR31-10 - 7|7 E3 olfactory receptor 617 protein-coding 14239 Mm.205798 NM_010226 ENSMUSG00000074676 Foxs1 FREAC10|Fkh3|Fkhl18 - 2|2 H1 forkhead box S1 protein-coding 240697 Mm.259800 NM_177722 ENSMUSG00000046101 Mcmdc2 6030422M02Rik - 1|1 A2 minichromosome maintenance domain containing 2 protein-coding 216021 Mm.39821 NM_001033260 ENSMUSG00000036923 Stox1 4732470K04Rik|Gm63 - 10|10 B4 storkhead box 1 protein-coding 109620 Mm.355327 NM_023842 ENSMUSG00000054889 Dsp 2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul - 13|13 A3.3 desmoplakin protein-coding 109465 Cms1 Cms - - resistance to Coccidioides immitis 1 unknown 16705 Mm.422800 NM_015741 ENSMUSG00000070335 Krtap9-1 - - 11|11 D keratin associated protein 9-1 protein-coding 619313 Mm.123436 NR_045781 ENSMUSG00000116504 I730030J21Rik - - 15 F1|15 RIKEN cDNA I730030J21 gene ncRNA 108576 Iap3ra2 - - - intracisternal A-type particle, U3 region, SINE repeat a-2 other 102635182 XR_377061 Gm32585 Gm42637 - 5 G1.1|5 predicted gene, 32585 ncRNA 61568 DXMit117 - - X 53.75 cM DNA segment, Chr X, Massachusetts Institute of Technology 117 unknown 100042225 Vmn2r-ps130 - - 17|17 A3.3 vomeronasal 2, receptor, pseudogene 130 pseudo 14751 Mm.589 NM_008155 ENSMUSG00000036427 Gpi1 Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi - 7 B1|7 19.46 cM glucose phosphate isomerase 1 protein-coding 96898 C80142 - - - expressed sequence C80142 protein-coding 102466794 NR_106015 ENSMUSG00000098325 Mir7048 Gm27274|mmu-mir-7048 - 7|7 A3 microRNA 7048 ncRNA 16154 Mm.379327 NM_008348 ENSMUSG00000032089 Il10ra AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R - 9 A5.2|9 24.84 cM interleukin 10 receptor, alpha protein-coding 102637912 XR_876878 LOC102637912 - - 17 C putative sperm motility kinase W protein-coding 171190 Mm.377170 NM_134172 ENSMUSG00000048697 Vmn1r26 V1rc17 - 6|6 B3 vomeronasal 1 receptor 26 protein-coding 110120513 LOC110120513 - - - VISTA enhancer mm1103 biological-region 108168660 XM_017318871 LOC108168660 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 102643175 Gm38662 - - 5|5 predicted gene, 38662 ncRNA 12344 Mm.12817 NM_007605 ENSMUSG00000041791 Capza3 510-4|Cappa3|Gsg3|Tex8|repro32 - 6 G2|6 69.77 cM capping protein (actin filament) muscle Z-line, alpha 3 protein-coding 100038701 Mm.482128 5730424H11Rik - - - RIKEN cDNA 5730424H11 gene protein-coding 111810 Iapls1-25 - - - intracisternal A particle, lymphocyte specific 1-25 other 110083 Mm.271304 XR_001781207 ENSMUSG00000021879 Dnah12 4921531P07Rik|DHC3|DLP12|Dnah12l|Dnahc12|Dnahc3|Dnahc7c|Dnahc7l|Gm284|Gm74|Gm907|HL-19|HL19|Hdhc3 - 14 A3|14 16.09 cM dynein, axonemal, heavy chain 12 protein-coding 105245040 XR_872915 Gm40551 - - 12 E|12 predicted gene, 40551 ncRNA 100417445 Gm14786 - - X|X C2 heat shock protein 1 (chaperonin) pseudogene pseudo 100034931 Tesw1 - - X 36.78 cM testis weight 1 unknown 320060 Mm.278974 B230308N11Rik - - 5|5 RIKEN cDNA B230308N11 gene protein-coding 71348 Mm.116991 5430439M09Rik - - - RIKEN cDNA 5430439M09 gene protein-coding 81007 Mm.390028 NM_030734 ENSMUSG00000039785 Defb5 BD-5 - 8|8 A1.3 defensin beta 5 protein-coding 105243533 XR_880263 Gm39426 - - 11 E1|11 predicted gene, 39426 ncRNA 68572 Mm.271062 NM_026729 ENSMUSG00000018858 Mrpl58 1110001A02Rik|1110002E03Rik|Ict1|MRP-L58 - 11|11 E2 mitochondrial ribosomal protein L58 protein-coding 105246106 XR_876046 LOC105246106 - - 16 B3 uncharacterized LOC105246106 ncRNA 100124387 Traj16 Gm16656 - 14|14 C2 T cell receptor alpha joining 16 other 97966 Mm.5791 C79122 - - - expressed sequence C79122 protein-coding 109675 Brp8 A8|Brp-8 - - brain protein 8 protein-coding 20877 Mm.3488 NM_011496 ENSMUSG00000020897 Aurkb AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5 - 11 B3|11 42.32 cM aurora kinase B protein-coding 102635965 Gm33166 - - 5|5 predicted gene, 33166 ncRNA 666113 Gm7935 EG666113 - 15|15 D3 splicing factor 3b, subunit 4 pseudogene pseudo 102631969 XR_380227 Gm30165 - - 10 A4|10 predicted gene, 30165 ncRNA 100041074 Gm3126 - - 9|9 E1 preferentially expressed antigen in melanoma like 6 pseudogene pseudo 100504398 Gm20206 - - 12|12 30.4 cM cytochrome c oxidase subunit 7A2, mitochondrial-like pseudo 233877 Mm.245897 NM_172747 ENSMUSG00000030685 Kctd13 1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1 - 7|7 F3 potassium channel tetramerisation domain containing 13 protein-coding 215859 Mm.377239 NM_001010830 ENSMUSG00000096442 Taar8a Gm230|taR-8a - 10|10 A4 trace amine-associated receptor 8A protein-coding 384219 Mm.469885 NM_001104622 ENSMUSG00000091450 Vmn2r11 EG384219 - 5|5 F vomeronasal 2, receptor 11 protein-coding 62951 D11Mit332 - - 11 65.48 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 332 unknown 639658 Mm.66880 NR_040529 ENSMUSG00000085852 Gm13807 - - 2|2 E1 predicted gene 13807 ncRNA 52750 D17Wsu193e - - - DNA segment, Chr 17, Wayne State University 193, expressed unknown 75266 Mm.402075 NM_029227 ENSMUSG00000021078 Tomm20l 4930553D19Rik - 12|12 C2 translocase of outer mitochondrial membrane 20-like protein-coding 212285 Mm.244403 NM_178407 ENSMUSG00000037999 Arap2 Centd1|Gm148|mKIAA0580 - 5|5 C3.1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 74364 Mm.473123 NM_175208 ENSMUSG00000055061 4931431C16Rik - - 5|5 B3 RIKEN cDNA 4931431C16 gene ncRNA 105246149 XR_876208 Gm41485 - - 16 C3.3|16 predicted gene, 41485 ncRNA 16183 Mm.14190 NM_008366 ENSMUSG00000027720 Il2 Il-2 - 3 B|3 18.3 cM interleukin 2 protein-coding 210457 Gm4764 EG210457 - X|X A3.3 testis derived transcript pseudogene pseudo 320006 E130107B13Rik - - 19|19 RIKEN cDNA E130107B13 gene protein-coding 100035436 Dbsq7 - - - diabetes susceptibility QTL 7 unknown 319862 Mm.441931 E230008O15Rik - - 5|5 RIKEN cDNA E230008O15 gene unknown 69315 Mm.272795 NM_027035 ENSMUSG00000021534 1700001L19Rik - - 13|13 B3 RIKEN cDNA 1700001L19 gene protein-coding 546185 Mm.359482 NR_040410 Gm5925 EG546185 - X|X A1.1 germ cell-less homolog 1 family pseudogene pseudo 108167622 XR_001778911 Gm46090 - - 1 B|1 predicted gene, 46090 ncRNA 382645 Gm5190 EG382645 - 12|12 F1 transducin-like enhancer of split 6 pseudogene pseudo 668549 Ighv1-62-3 EG668549|Gm9235 - 12|12 F2 immunoglobulin heavy variable 1-62-3 other 102638431 XR_388840 Gm35001 - - 11 B4|11 predicted gene, 35001 ncRNA 100040873 Gm20853 - - Y|Y predicted gene, 20853 protein-coding 226101 Mm.34674 NM_177035 ENSMUSG00000048612 Myof 2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3 - 19|19 C2 myoferlin protein-coding 102640246 XR_373723 Gm36360 - - 1 H4|1 predicted gene, 36360 ncRNA 28056 D16Ium13e D16Ium13 - - DNA segment, Chr 16, Indiana University Medical 13, expressed unknown 78239 Mm.160060 NM_030058 ENSMUSG00000017310 Spint4 9230105I15Rik - 2|2 H3 serine protease inhibitor, Kunitz type 4 protein-coding 97571 Mm.442027 C87882 - - - expressed sequence C87882 protein-coding 100042039 Vmn2r-ps42 - - 7|7 A1 vomeronasal 2, receptor, pseudogene 42 pseudo 105245529 XR_873561 Gm40974 - - 13 B2|13 predicted gene, 40974 ncRNA 18612 Mm.5025 NM_008815 ENSMUSG00000017724 Etv4 AW414408|Pea-3|Pea3 - 11 D|11 65.48 cM ets variant 4 protein-coding 105246622 Gm41887 - - X|X predicted gene, 41887 protein-coding 667825 Gm14772 EG667825 - X|X C1 predicted gene 14772 pseudo 63859 Mm.422780 NM_022016 ENSMUSG00000032343 Impg1 A930015H12Rik|IMP150|SPACR - 9 E1|9 43.99 cM interphotoreceptor matrix proteoglycan 1 protein-coding 621227 Gm12365 - - 4|4 A5 high mobility group box 2 pseudogene pseudo 102465716 NR_106101 ENSMUSG00000098446 Mir7242 Gm27809|mmu-mir-7242 - 9|9 C microRNA 7242 ncRNA 435977 Gm5733 EG435977 - 7|7 B4 MAS-related GPR, member A4 pseudogene pseudo 15511 Mm.372314 NM_010478 ENSMUSG00000090877 Hspa1b Hsp70|Hsp70-1|Hsp70.1|hsp68 - 17 B1|17 18.5 cM heat shock protein 1B protein-coding 214191 Mm.229191 NM_172526 ENSMUSG00000051036 Ttc24 A430025D11Rik - 3|3 F1 tetratricopeptide repeat domain 24 protein-coding 102636992 XR_378870 Gm33910 - - 8 A4|8 predicted gene, 33910 ncRNA 105243834 XR_872241 Gm39578 - - 11 A1|11 predicted gene, 39578 ncRNA 53421 Mm.28375 NM_016906 ENSMUSG00000030082 Sec61a1 AA408394|AA410007|Sec61a - 6|6 D1 Sec61 alpha 1 subunit (S. cerevisiae) protein-coding 102466780 NR_105952 ENSMUSG00000098346 Mir6986 Gm27709|mmu-mir-6986 - 19|19 A microRNA 6986 ncRNA 320473 Mm.46309 NM_028084 ENSMUSG00000039414 Heatr5b 2010013B10Rik|A230048G03Rik|AV071430|D330050P16Rik|mKIAA1414 - 17|17 E3 HEAT repeat containing 5B protein-coding 20587 Mm.279751 NM_011418 ENSMUSG00000000902 Smarcb1 AU020204|Baf47|Ini1|SNF5/INI1|Snf5 - 10|10 C1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 protein-coding 100044666 Rps10-ps4 Gm15633 - 5|5 ribosomal protein S10, pseudogene 4 pseudo 666422 Mm.484413 NR_033590 ENSMUSG00000110372 Gm8096 EG666422 - 8 A2|8 3-phosphoglycerate dehydrogenase pseudogene pseudo 667444 Mm.484972 NM_001166748 ENSMUSG00000074311 Vmn1r139 EG667444|Gm8636 - 7|7 A3 vomeronasal 1 receptor 139 protein-coding 27028 Mm.290753 NM_013848 ENSMUSG00000028644 Ermap AA409279|AI666418 - 4 D2.1|4 55.34 cM erythroblast membrane-associated protein protein-coding 100042960 Mm.319679 XM_006519924 ENSMUSG00000100486 Gm4131 - - 14 D1|14 predicted gene 4131 protein-coding 100124351 Traj38 Gm16670 - 14|14 C2 T cell receptor alpha joining 38 other 102636609 Scgb1b13-ps Abpa13-ps - 7 B1|7 secretoglobin, family 1B, member 13, pseudogene pseudo 102638911 XR_387890 Gm35358 - - 8 C3|8 predicted gene, 35358 ncRNA 102293 Mm.36341 AW111846 - - - expressed sequence AW111846 protein-coding 101055629 Gm29701 - - 8 B3.3|8 predicted gene, 29701 pseudo 100417422 Gm16574 - - 17|17 A1 RAN GTPase activating protein 1 pseudogene pseudo 73992 Mm.159110 NR_046032 ENSMUSG00000113470 4930448F12Rik - - 13|13 A2 RIKEN cDNA 4930448F12 gene ncRNA 403178 Mm.297057 NM_207279 ENSMUSG00000064247 Plcxd1 A330045H12Rik|Gm576 - 5|5 F phosphatidylinositol-specific phospholipase C, X domain containing 1 protein-coding 57916 Mm.265915 NM_021349 ENSMUSG00000010142 Tnfrsf13b 1200009E08Rik|Taci - 11|11 B2 tumor necrosis factor receptor superfamily, member 13b protein-coding 102635012 Mm.399509 NR_153783 ENSMUSG00000115043 Gm32455 - - 14 D3|14 predicted gene, 32455 ncRNA 103942 Whto - - - white toes protein-coding 195209 Mm.102191 XM_006531557 Zfp469 Gm22 - 8|8 E1 zinc finger protein 469 protein-coding 14256 Mm.1658 NM_013520 ENSMUSG00000110206 Flt3l Flt3lg|Ly72L - 7 B3|7 29.14 cM FMS-like tyrosine kinase 3 ligand protein-coding 13631 Mm.25997 NM_007908 ENSMUSG00000035064 Eef2k C86191|eEF-2K - 7|7 F2 eukaryotic elongation factor-2 kinase protein-coding 109019 Mm.196290 NM_028696 ENSMUSG00000026107 Nabp1 4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2 - 1|1 C1.1 nucleic acid binding protein 1 protein-coding 100417894 Gm18887 - - 18|18 D1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 pseudogene pseudo 16059 Mm.342177 Igh-V7183 B9-scFv|IgG|IgH|IgVH1(VSG)|VH7183|VI24H - 12 F2|12 immunoglobulin heavy chain (V7183 family) other 667141 Mm.425331 Gm8479 EG667141 - 6 C1|6 thiopurine S-methyltransferase pseudogene pseudo 17425 Mm.24214 NM_010812 ENSMUSG00000056493 Foxk1 A630048H08Rik|AI463295|Gm10868|Mnf - 5 G2|5 81.53 cM forkhead box K1 protein-coding 54122 Mm.1999 NM_016855 ENSMUSG00000043262 Uevld 8430408E05Rik|Attp - 7|7 B3 UEV and lactate/malate dehyrogenase domains protein-coding 52033 Mm.24337 NM_023209 ENSMUSG00000022033 Pbk 2810434B10Rik|AW538537|D14Ertd732e|TOPK - 14 D1|14 34.36 cM PDZ binding kinase protein-coding 96972 C78760 - - - expressed sequence C78760 unknown 102465962 NR_105781 ENSMUSG00000098448 Mir6362 Gm27812|mmu-mir-6362 - 16|16 B1 microRNA 6362 ncRNA 105242933 Gm39005 - - 7|7 predicted gene, 39005 ncRNA 105083 Mm.486295 NM_134058 ENSMUSG00000042275 Pelo AA409897|AI852218 - 13|13 D2.2 pelota mRNA surveillance and ribosome rescue factor protein-coding 546134 Mm.297580 NM_001033498 ENSMUSG00000074259 Gramd2 BC064463|Gramd2a - 9|9 B GRAM domain containing 2 protein-coding 102467231 n-TAagc10 n-Ta10 - 13 A3.1|13 nuclear encoded tRNA alanine 10 (anticodon AGC) tRNA 546843 Gm12848 - - 4|4 D1 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) pseudogene pseudo 72831 Mm.276305 NM_133347 ENSMUSG00000032480 Dhx30 2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR - 9|9 F2 DEAH (Asp-Glu-Ala-His) box polypeptide 30 protein-coding 320631 Mm.78330 NM_177213 ENSMUSG00000054746 Abca15 4930500I12Rik - 7|7 F2 ATP-binding cassette, sub-family A (ABC1), member 15 protein-coding 102639885 Gm36091 - - 18|18 predicted gene, 36091 ncRNA 61060 D4Mit266 - - 4 10.32 cM DNA segment, Chr 4, Massachusetts Institute of Technology 266 unknown 732489 NR_030440 ENSMUSG00000076376 Mir674 Mirn674|mir-674|mmu-mir-674 - 2 E5|2 microRNA 674 ncRNA 100043205 Gm13815 - - 2|2 E1 predicted gene 13815 pseudo 100041987 Gm20896 - - Y|Y predicted gene, 20896 protein-coding 102638546 XR_378451 Gm35083 - - 7 F1|7 predicted gene, 35083 protein-coding 100034882 Diht - - 5 55.99 cM dopamine-induced hypothermia unknown 52303 D1Ertd218e - - 1 G1|1 DNA segment, Chr 1, ERATO Doi 218, expressed unknown 14137 Mm.474432 NM_010191 ENSMUSG00000021273 Fdft1 SQS|SS - 14 D1|14 33.24 cM farnesyl diphosphate farnesyl transferase 1 protein-coding 668359 Mm.80593 NM_001163730 ENSMUSG00000094328 Gm9125 EG668359 - 3 F2.1|3 predicted gene 9125 protein-coding 492899 Fembrs6 - - 9 42.48 cM femur breaking strength 6 unknown 319580 Mm.446425 9630055L06Rik - - 5|5 RIKEN cDNA 9630055L06 gene protein-coding 14202 Mm.46163 NM_010214 ENSMUSG00000050035 Fhl4 - - 10|10 C1 four and a half LIM domains 4 protein-coding 110613 Ptma-rs12 - - - prothymosin alpha, related sequence 12 protein-coding 102635933 XR_378030 Gm33144 - - 6 F3|6 predicted gene, 33144 ncRNA 12517 Mm.188157 NM_007654 ENSMUSG00000028459 Cd72 CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2 - 4 A5|4 23.04 cM CD72 antigen protein-coding 110886 Mm.273114 NM_176942 ENSMUSG00000055078 Gabra5 A230018I05Rik - 7 B5|7 33.52 cM gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5 protein-coding 100862029 Gm21413 - - Y|Y predicted gene, 21413 protein-coding 667027 Rps12-ps7 EG667027|Gm8427|Rps12-ps - X|X F3 ribosomal protein S12, pseudogene 7 pseudo 109201 A930017D03Rik - - 11|11 RIKEN cDNA A930017D03 gene protein-coding 258336 Mm.261577 NM_146339 ENSMUSG00000051118 Olfr77 18A|MOR143-1 - 9|9 A3 olfactory receptor 77 protein-coding 100503459 Gm14539 - - X A1.3|X 16.07 cM upregulated during skeletal muscle growth 5 pseudogene pseudo 666436 Gm8104 EG666436 - 14|14 C1 predicted gene 8104 protein-coding 19469 Rb(11.13)4Bnr Rb4Bnr - - Robertsonian translocation, Chr 11 and 13, Universitat Bonn/Rhein 4 other 100036445 Eae37 - - - experimental allergic encephalomyelitis susceptibility 37 unknown 100045676 Gm15031 - - X|X F2 40S ribosomal protein S28 pseudogene pseudo 100040928 Gm3047 - - 14 A1|14 predicted gene 3047 pseudo 224598 Mm.390945 NM_145484 ENSMUSG00000044501 Zfp758 BC021442 - 17|17 A3.3 zinc finger protein 758 protein-coding 105245052 XR_872952 Gm40560 - - 12 E|12 predicted gene, 40560 ncRNA 102639751 Gm35989 - - 12|12 predicted gene, 35989 ncRNA 100039673 Mm.399374 Gm2366 - - 8 B1.1|8 predicted gene 2366 unknown 52139 Mm.442336 D5Ertd560e AU023683 - 5 8.72 cM DNA segment, Chr 5, ERATO Doi 560, expressed protein-coding 102467371 n-TPtgg8 n-Tp18 - 7 E1|7 nuclear encoded tRNA proline 8 (anticodon TGG) tRNA 109847 Mr66-1 - - - middle repeat MR66-1 protein-coding 110479 Tcra-V5.3 - - - T cell receptor alpha, variable 5.3 other 23820 B489B12T - - - DNA segment B489-B-12-T unknown 100417722 Gm21926 - - 17|17 A1 NLR family, pyrin domain containing 2 pseudogene pseudo 100416107 Gm17919 - - 7|7 D3 folate hydrolase pseudogene pseudo 102636883 XR_373431 Gm33833 - - 1 C2|1 predicted gene, 33833 ncRNA 100035993 Mpcp12 - - - myeloid progenitor cell proliferation 12 unknown 76081 Mm.446655 5830458C19Rik - - 14|14 RIKEN cDNA 5830458C19 gene protein-coding 100042832 Rpl9-ps4 Gm10321 - 13|13 C1 ribosomal protein L9, pseudogene 4 pseudo 102638027 XR_381130 Gm34695 - - 11 A4|11 predicted gene, 34695 ncRNA 665138 Gm7512 EG665138 - 1|1 A2 3-hydroxyisobutyryl-Coenzyme A hydrolase pseudogene pseudo 100043089 Mm.403148 XR_386237 Gm4221 - - 18 D3|18 predicted gene 4221 unknown 628951 Mm.428032 NR_045001 Gm6936 - - 16 B5|16 predicted gene 6936 ncRNA 77726 6030492E11Rik - - 6|6 RIKEN cDNA 6030492E11 gene protein-coding 108167846 XR_001779927 Gm46250 - - 1 H4|1 predicted gene, 46250 ncRNA 442846 Mm.417648 NR_045419 A530050N04Rik - - 18 E1|18 RIKEN cDNA A530050N04 gene ncRNA 100039752 Gm20814 - - Y|Y predicted gene, 20814 protein-coding 171504 Mm.170665 NM_138310 ENSMUSG00000042759 Apobr Apob-48r|Apob48r - 7|7 F3 apolipoprotein B receptor protein-coding 102216271 Gm29814 - - 4 A3|4 small cell adhesion glycoprotein pseudogene pseudo 16256 In(15)4H-p In(15)4H|In4H - - inversion, Chr 15, Harwell 4, proximal other 57272 Mm.330390 NM_020515 ENSMUSG00000075068 Olfr140 A16|MOR235-1|Ora16 - 2|2 E1 olfactory receptor 140 protein-coding 102640432 XR_381304 Gm36495 - - 12 A1.1|12 predicted gene, 36495 ncRNA 666840 Gm11814 - - 4|4 A1 lactate dehydrogenase A pseudogene pseudo 71116 Mm.18959 NM_026959 ENSMUSG00000029125 Stx18 1810035L21Rik|4933425D03Rik|AU041562 - 5|5 B3 syntaxin 18 protein-coding 76967 Mm.87290 NM_029818 ENSMUSG00000034601 2700049A03Rik Ta3|Talpid3|mKIAA0586 - 12|12 C2-C3 RIKEN cDNA 2700049A03 gene protein-coding 61887 D1Mit305 - - 1 44.95 cM DNA segment, Chr 1, Massachusetts Institute of Technology 305 unknown 72739 Mm.296071 NM_023685 ENSMUSG00000021327 Zkscan3 2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35 - 13|13 A3.1 zinc finger with KRAB and SCAN domains 3 protein-coding 105245963 XR_875378 Gm41334 - - 15 D1|15 predicted gene, 41334 ncRNA 216549 Mm.356580 NM_181411 ENSMUSG00000049659 Aftph - - 11|11 A3.1 aftiphilin protein-coding 666443 Gm11370 - - 13|13 A3.2 predicted gene 11370 pseudo 50767 Mm.23085 NM_015801 ENSMUSG00000004565 Pnpla6 AI661849|MSws|Nte - 8 A1.1|8 1.92 cM patatin-like phospholipase domain containing 6 protein-coding 67373 Mm.153729 NM_023333 ENSMUSG00000029882 2210010C04Rik AV072249 - 6|6 B1 RIKEN cDNA 2210010C04 gene protein-coding 105245949 XR_875336 Gm41321 - - 15 C|15 predicted gene, 41321 ncRNA 111431 Emv12 Akv-2|Emv-12 - - endogenous ecotropic MuLV 12 other 259089 Mm.377834 NM_147085 ENSMUSG00000043310 Olfr571 MOR21-1 - 7|7 E3 olfactory receptor 571 protein-coding 320899 A430110C17Rik - - 5|5 RIKEN cDNA A430110C17 gene protein-coding 258288 Mm.451652 NM_146291 ENSMUSG00000096289 Olfr1484 MOR202-37 - 19|19 A olfactory receptor 1484 protein-coding 105244286 Gm39925 - - 2|2 predicted gene, 39925 ncRNA 81897 Mm.44889 NM_031178 ENSMUSG00000045322 Tlr9 - - 9|9 F1 toll-like receptor 9 protein-coding 105244270 XR_001783617 Gm39911 - - 2 E4|2 predicted gene, 39911 ncRNA 69068 Mm.25775 NM_026931 ENSMUSG00000056313 Tcim 1110065B09Rik|1810011O10Rik|AW121743|AW321058 - 8|8 A2 transcriptional and immune response regulator protein-coding 102633936 XR_378945 Gm31638 - - 8 B1.1|8 predicted gene, 31638 ncRNA 100041430 Gm3333 - - 13 B3|13 zinc finger protein 938 pseudogene pseudo 15417 Mm.258271 NM_008270 ENSMUSG00000020875 Hoxb9 Hox-2.5 - 11 D|11 59.81 cM homeobox B9 protein-coding 434907 Gm5648 EG434907 - X|X E3 ubiquitin-like, containing PHD and RING finger domains, 1 pseudogene pseudo 100040697 Mm.429277 XM_011244803 Gm10340 - - 14 A1|14 predicted gene 10340 protein-coding 231162 Mm.76407 NM_001081106 ENSMUSG00000062329 Cytl1 4930443F05Rik|4Cytl1|C17|Cyt1|Gm147 - 5|5 B3 cytokine-like 1 protein-coding 99812 AU022320 - - - expressed sequence AU022320 unknown 270049 Mm.236368 NM_175032 ENSMUSG00000096914 Galntl6 1700021K10Rik|4930431L04Rik|A830023L05 - 8|8 B2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6 protein-coding 59009 Mm.27949 NM_021506 ENSMUSG00000031642 Sh3rf1 2200003J05Rik|Posh|R75531|Sh3md2 - 8|8 B3.1 SH3 domain containing ring finger 1 protein-coding 102635340 XR_377903 Gm32705 - - 6 D3|6 predicted gene, 32705 ncRNA 666213 Gm7985 EG666213 - 12|12 C3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 108585 Iap3rc7 - - - intracisternal A-type particle, U3 region, SINE repeat c-7 other 114355 Skl7 - - 16 13.8 cM skeletal size (tail length) 7 unknown 100503849 Mm.389285 NM_183265 Sp3os 1700011J10Rik - 2|2 C3 trans-acting transcription factor 3, opposite strand ncRNA 631406 Slfn13l - - 11|11 schlafen family member 13 like protein-coding 105243397 XR_870715 Gm39331 - - 9 A5.3|9 predicted gene, 39331 ncRNA 68947 Mm.29380 NM_175140 ENSMUSG00000060402 Chst8 1500011J21Rik|AI426009 - 7|7 B2 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 protein-coding 102636460 XR_382384 Gm33519 - - 13 B1|13 predicted gene, 33519 ncRNA 15117 Mm.5148 NM_008216 ENSMUSG00000022367 Has2 - - 15 D1|15 23.31 cM hyaluronan synthase 2 protein-coding 208076 Mm.260335 NM_148950 ENSMUSG00000035934 Pknox2 D230005H23Rik|Prep2 - 9|9 A4 Pbx/knotted 1 homeobox 2 protein-coding 99702 AI663974 - - - expressed sequence AI663974 unknown 116738 Tlsr8 - - - thymic lymphoma suppressor region 8 unknown 15216 Mm.2681 NM_010424 ENSMUSG00000006611 Hfe MR2 - 13 A3.1|13 9.88 cM hemochromatosis protein-coding 192164 Mm.308500 NM_138663 ENSMUSG00000103310 Pcdha12 Cnr5|Crnr5|Pcdha13 - 18|18 B2-B3 protocadherin alpha 12 protein-coding 23886 Mm.31325 NM_011819 ENSMUSG00000038508 Gdf15 MIC-1|NAG-1|SBF - 8|8 B3.3 growth differentiation factor 15 protein-coding 328766 Mm.50947 NR_137274 ENSMUSG00000102080 Gm5092 4933430A09 - 17 A3.2|17 predicted gene 5092 ncRNA 634331 XM_981711 Gm7133 EG634331 - 1|1 D predicted gene 7133 protein-coding 102633896 XR_389766 Gm31612 - - 5 A3|5 predicted gene, 31612 ncRNA 12457 Mm.86541 NM_009834 ENSMUSG00000023087 Noct AU043840|Ccr4|Ccrn4l - 3|3 C nocturnin protein-coding 100125952 Mm.406713 Gm10468 - - - predicted gene 10468 unknown 791392 Mm.377971 Gm9947 - - - predicted gene 9947 unknown 100038492 XR_381325 F630048H11Rik - - 12 A1.3|12 RIKEN cDNA F630048H11 gene unknown 108390 Xmv5 Xmv-5 - - xenotropic murine leukemia virus 5 other 100035910 Mpdk5 - - - modifier of polycystic kidney disease 5 unknown 111561 Xmv12 Xmv-12 - - xenotropic murine leukemia virus 12 other 386426 Gm15593 EG386426 - 6 A2|6 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 74322 Mm.17537 NM_028868 ENSMUSG00000024560 Cxxc1 2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18 - 18|18 E2 CXXC finger 1 (PHD domain) protein-coding 100416400 Gm11736 - - 11|11 E2 predicted gene 11736 pseudo 16815 Mm.20359 NM_010692 ENSMUSG00000034968 Lbx2 Lbx2h - 6 C3|6 35.94 cM ladybird homeobox 2 protein-coding 60716 D8Mit58 - - 8 2.52 cM DNA segment, Chr 8, Massachusetts Institute of Technology 58 unknown 75030 Mm.159403 NR_028310 ENSMUSG00000112364 4930503E24Rik - - 10|10 D2 eukaryotic translation initiation factor 3, subunit I pseudogene pseudo 12354 Mm.129265 NM_053070 ENSMUSG00000031883 Car7 AV343731|Ca7 - 8|8 D3 carbonic anhydrase 7 protein-coding 102632010 Gm30191 - - 4|4 predicted gene, 30191 protein-coding 493013 Pbwg3 - - 7 88.85 cM postnatal body weight growth 3 unknown 105246408 Gm41700 - - 18|18 predicted gene, 41700 ncRNA 56066 Mm.131723 NM_019494 ENSMUSG00000060183 Cxcl11 Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1 - 5|5 E2 chemokine (C-X-C motif) ligand 11 protein-coding 62932 D11Mit306 - - 11 12.92 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 306 unknown 100101940 Trav21-dv12 Gm13892|Trav21/dv12 - 14|14 C2 T cell receptor alpha variable 21-DV12 other 60934 D9Mit97 - - 9 27.75 cM DNA segment, Chr 9, Massachusetts Institute of Technology 97 unknown 14068 Mm.4827 NM_010172 ENSMUSG00000031443 F7 AI132620|Cf7|FVII - 8 A1.1|8 5.73 cM coagulation factor VII protein-coding 102636676 XR_375925 Gm33679 - - 3 F2.2|3 predicted gene, 33679 ncRNA 69187 Mm.33692 NM_026983 ENSMUSG00000030219 Erp27 1810033M07Rik|1810047B09Rik - 6|6 G1 endoplasmic reticulum protein 27 protein-coding 114266 Manh2 QTL-SH1.2 - - mandible shape 2 unknown 102632545 XR_375379 Gm30591 - - 2 H4|2 predicted gene, 30591 ncRNA 19733 Mm.2118 NM_009060 ENSMUSG00000023070 Rgn AI265316|GNL|SMP30 - X|X A1.3 regucalcin protein-coding 18720 Mm.296409 NM_008847 ENSMUSG00000028126 Pip5k1a PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a - 3|3 F2.1 phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha protein-coding 74934 Mm.107918 NM_001081393 ENSMUSG00000061802 Armc4 4930463I21Rik|b2b227.1Clo|b2b643Clo - 18|18 A1 armadillo repeat containing 4 protein-coding 140792 Mm.218571 NM_130449 ENSMUSG00000036103 Colec12 CL-P1|SRCL|Scara4 - 18|18 A1 collectin sub-family member 12 protein-coding 13535 dup - - - dumpy-Oda unknown 109280013 LOC109280013 Mm108 - - VISTA enhancer mm108 biological-region 100124416 Eeq2 EE8F - - exercise endurance QTL 2 unknown 77746 9930120I10Rik - - 6|6 RIKEN cDNA 9930120I10 gene protein-coding 100534388 LOC100534388 - - 4|4 E1 protein phosphatase 2, regulatory subunit B (B56), alpha isoform pseudogene pseudo 102640022 XR_373720 Gm36196 - - 1 H3|1 predicted gene, 36196 ncRNA 57784 Mm.24186 NM_021328 ENSMUSG00000022089 Bin3 1700015F07Rik - 14|14 D2 bridging integrator 3 protein-coding 102632184 XR_376717 Gm30325 - - 5 A1|5 predicted gene, 30325 ncRNA 544806 Mm.379774 NM_001034896 ENSMUSG00000075610 Tmem92 AU016430|Tmem92-ps - 11|11 D transmembrane protein 92 protein-coding 102632922 Mm.444109 XR_378320 Gm30873 Gm44556 - 7 D3|7 predicted gene, 30873 ncRNA 27826 211N06F - - - DNA segment, 211N06F (Research Genetics) unknown 13471 Dp(7)1Rl Dp1Rl - - duplication, Chr 7, Russell 1 other 75901 Mm.28733 NM_133761 ENSMUSG00000021962 Dcp1a 1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF - 14 B|14 18.75 cM decapping mRNA 1A protein-coding 100416017 Gm17873 - - 15|15 A1 exportin 4 pseudogene pseudo 114282 Manh15 QTL-SH11.1 - - mandible shape 15 unknown 100038688 Mm.437256 Gm10724 - - - predicted gene 10724 unknown 665211 Mm.441314 NM_001190302 ENSMUSG00000078862 Gm14326 - - 2|2 H4 predicted gene 14326 protein-coding 114309 Lprm4 - - - lymphoproliferation modifier 4 unknown 102636701 XM_006511610 Gm33700 - - 9 E3.3|9 predicted gene, 33700 protein-coding 436234 Gm5762 EG436234 - X|X F2 predicted gene 5762 pseudo 100609 Mm.281189 NM_145414 ENSMUSG00000000916 Nsun5 9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a - 5|5 G2 NOL1/NOP2/Sun domain family, member 5 protein-coding 111419 Mtv27 Mtv-27 - - mammary tumor virus locus 27 other 102637815 XR_869889 LOC102637815 - - 7 F1 uncharacterized LOC102637815 ncRNA 102639494 XR_001779198 Gm28380 - - 1 D|1 predicted gene 28380 ncRNA 105244122 Gm39791 - - 2|2 predicted gene, 39791 ncRNA 100093647 Trnav-gac - - - transfer RNA valine (anticodon GAC) tRNA 27904 D16Ium61 - - 16 30.83 cM DNA segment, Chr 16, Indiana University Medical 61 unknown 18128 Mm.290610 NM_008714 ENSMUSG00000026923 Notch1 9930111A19Rik|Mis6|N1|Tan1|lin-12 - 2 A3|2 18.91 cM notch 1 protein-coding 110741 Dcsx4 - - - distortion controlling, chromosome X, locus 4 protein-coding 100417403 Gm18591 - - 12|12 B1 serine active site containing 1 pseudogene pseudo 257961 NM_001011788 ENSMUSG00000109022 Olfr1432 GA_x5J8B7W20A2-6027-5647|GA_x6K02T2RE5P-2593538-2592756|Olfr1432-ps1 - 19|19 A olfactory receptor 1432 protein-coding 102631804 Gm28671 - - Y|Y predicted gene 28671 protein-coding 27866 D11Moh37e - - - DNA segment, Chr 11, KL Mohlke 37 expressed unknown 93672 Mm.196691 NM_053095 ENSMUSG00000026420 Il24 FISP|Mda-7|Mda7|St16 - 1|1 E4 interleukin 24 protein-coding 100042537 Gm20925 - - Y|Y predicted gene, 20925 protein-coding 15569 Mm.318042 NM_010486 ENSMUSG00000008489 Elavl2 Hub|mel-N1 - 4 C5|4 42.36 cM ELAV like RNA binding protein 1 protein-coding 102639212 Mm.359424 XR_379080 Gm35572 Gm45755 - 8 B3.3|8 predicted gene, 35572 ncRNA 100416295 Gm18022 - - X|X A7.1 DMRT-like family C1c2 pseudogene pseudo 258708 Mm.223142 NM_146713 ENSMUSG00000043383 Olfr1342 MOR258-3 - 4|4 D2.1 olfactory receptor 1342 protein-coding 214812 Mm.139231 NM_172536 ENSMUSG00000040524 Zfp609 9830165N24|BC016271|Znf609|mKIAA0295 - 9|9 C zinc finger protein 609 protein-coding 96891 Mm.394035 C79246 - - - expressed sequence C79246 unknown 53714 D19Mc1 D19McC1 - - DNA segment, Chr 19, McClelland 1 unknown 98401 Mm.441861 AI594674 - - - expressed sequence AI594674 unknown 102639882 Mm.443262 NR_151453 1700016K05Rik - - 17|17 E1.1 RIKEN cDNA 1700016K05 gene ncRNA 230766 Mm.20377 NM_182783 ENSMUSG00000050493 Fam167b SEC - 4|4 D2.2 family with sequence similarity 167, member B protein-coding 246048 Mm.77895 NM_139134 ENSMUSG00000022860 Chodl 3110074E07Rik|MT75|PRED12 - 16|16 C3.1 chondrolectin protein-coding 64337 Mm.171123 NM_022422 ENSMUSG00000025739 Gng13 1500031D04Rik|AB030194|Ggamma13 - 17|17 A3.3 guanine nucleotide binding protein (G protein), gamma 13 protein-coding 102467582 n-TFgaa3 n-Tf3 - 10 C1|10 nuclear encoded tRNA pheylalanine 3 (anticodon GAA) tRNA 668332 Gm9110 EG668332 - 12|12 A1.1 RAB11B, member RAS oncogene family pseudogene pseudo 77682 Mm.488621 NR_040511 ENSMUSG00000079602 9230102O04Rik - - 2|2 A1 RIKEN cDNA 9230102O04 gene ncRNA 108841 Mm.413106 NM_175372 ENSMUSG00000008435 Rdh13 8430425D21Rik - 7|7 A1 retinol dehydrogenase 13 (all-trans and 9-cis) protein-coding 102641261 Mm.29746 LOC102641261 - - - uncharacterized LOC102641261 ncRNA 69408 Mm.222241 NM_139139 ENSMUSG00000034278 Dnajc17 1700025B16Rik|C87112|D9Bwg1371e - 2 E5|2 59.97 cM DnaJ heat shock protein family (Hsp40) member C17 protein-coding 233332 Mm.445763 NM_001033877 ENSMUSG00000058145 Adamts17 AU023434 - 7|7 C a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17 protein-coding 19263 Mm.37213 NM_029928 ENSMUSG00000020154 Ptprb 3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp - 10|10 D2 protein tyrosine phosphatase, receptor type, B protein-coding 66346 Mm.54292 NM_025503 ENSMUSG00000061633 1700029P11Rik - - 15|15 E1 RIKEN cDNA 1700029P11 gene protein-coding 105244623 XR_867913 Gm12694 - - 4 C5|4 43.34 cM predicted gene 12694 ncRNA 97517 Mm.325134 C77741 - - - expressed sequence C77741 unknown 100861873 Gm21287 - - Y|Y predicted gene, 21287 protein-coding 268880 Mm.286693 NM_198626 ENSMUSG00000047434 Xxylt1 AI480653 - 16|16 B2 xyloside xylosyltransferase 1 protein-coding 100124663 Trbv7 - - 6|6 B1 T cell receptor beta variable 7 pseudo 53720 D6H3S18 D3S18h - - DNA segment, Chr 6, human D3S18 unknown 105243594 LOC105243594 - - 5 E5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 pseudogene pseudo 258290 Mm.222990 NM_146293 ENSMUSG00000068815 Olfr1143 MOR177-14 - 2|2 D olfactory receptor 1143 protein-coding 100503563 NM_001171893 Gm10240 - - 15|15 D2 ribosomal protein L21 pseudogene pseudo 668072 Gm8961 EG668072 - 14|14 C3 predicted gene 8961 pseudo 432549 Gm12138 EG432549|Gm1817 - 11|11 A5 aldo-keto reductase family 1, member B3 pseudogene pseudo 385263 Mm.60893 NM_001033479 ENSMUSG00000074655 Gm1527 Gm1136 - 3|3 A3 predicted gene 1527 protein-coding 102632158 XR_879925 Gm30305 - - 11 B3|11 predicted gene, 30305 ncRNA 105244548 Gm40141 - - 3|3 predicted gene, 40141 ncRNA 78685 Mm.30801 B430105A11Rik - - 18|18 RIKEN cDNA B430105A11 gene protein-coding 102632746 Gm30738 - - 12|12 predicted gene, 30738 pseudo 77300 Mm.440325 NM_001045513 ENSMUSG00000026014 Raph1 9430025M21Rik|C730009O10Rik|Lpd - 1|1 C2 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 246159 L1Md-Gf36 GF36 - - L1 repeat, Gf subfamily, member 36 other 105242861 XR_880145 Gm38953 - - 11 D|11 predicted gene, 38953 ncRNA 66801 Mm.425295 NM_025774 ENSMUSG00000039737 Prkrip1 8430424D23Rik|C114 - 5|5 G2 Prkr interacting protein 1 (IL11 inducible) protein-coding 100416601 Olfr1060-ps1 Gm13721|MOR190-4P|MOR190-5_p|Olfr1060 - 2|2 D olfactory receptor 1060, pseudogene 1 pseudo 100126244 Mm.86343 NR_152218 Gm13262 - - 2|2 A1 predicted gene 13262 ncRNA 102636102 Gm33267 - - Y|Y predicted gene, 33267 protein-coding 103551 Mm.24506 NM_175332 ENSMUSG00000043439 Epop AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48 - 11|11 D elongin BC and polycomb repressive complex 2 associated protein protein-coding 21308 T(X;4)7Rl T7Rl - - reciprocal translocation, Chr X and 4, Russell 7 other 18843 Mm.268852 NM_011126 ENSMUSG00000027483 Bpifa1 LUNX|NASG|Plunc|SPLUNC1|SPURT - 2|2 H1 BPI fold containing family A, member 1 protein-coding 100034847 Ltry - - - laterality unknown 105245827 XR_874840 Gm41217 - - 14 D3|14 predicted gene, 41217 ncRNA 102637717 XR_390701 Gm34457 - - 4 C4|4 predicted gene, 34457 ncRNA 16839 lec - - - laryngotracheo esophageal cleft unknown 108169170 NM_008460 Klra11-ps Gm15855|Klra11|Ly49K - 6 63.44 cM|6 F3 killer cell lectin-like receptor subfamily A, member 11, pseudogene pseudo 102635316 Mm.404570 NR_152777 ENSMUSG00000111531 Gm32688 - - 10 C2|10 predicted gene, 32688 ncRNA 52661 D18Ertd613e - - 18 22.79 cM DNA segment, Chr 18, ERATO Doi 613, expressed unknown 19401 Mm.439744 NM_009024 ENSMUSG00000037992 Rara Nr1b1|RAR|RARalpha1 - 11 D|11 62.76 cM retinoic acid receptor, alpha protein-coding 212998 Mm.97511 NM_145389 ENSMUSG00000033187 BC016579 - - 16|16 B5 cDNA sequence, BC016579 protein-coding 75706 Mm.46378 NM_029393 ENSMUSG00000020913 Krt24 2310058N18Rik|2310075C18Rik - 11|11 D keratin 24 protein-coding 100043065 Mm.479482 NM_001034058 ENSMUSG00000095953 6030469F06Rik - - 12|12 A2 RIKEN cDNA 6030469F06 gene ncRNA 102638328 Gm34919 - - 2|2 predicted gene, 34919 ncRNA 100038412 Mm.413024 Faddos Gm10574 - - Fas (TNFRSF6)-associated via death domain, opposite strand unknown 52211 D3Ertd246e - - 3 19.56 cM DNA segment, Chr 3, ERATO Doi 246, expressed unknown 258373 Mm.377463 NM_146376 ENSMUSG00000043880 Olfr323 MOR107-1 - 11|11 B1.3 olfactory receptor 323 protein-coding 71753 Mm.34056 NM_027902 ENSMUSG00000016942 Tmprss6 1300008A22Rik - 15|15 E1 transmembrane serine protease 6 protein-coding 105246320 XR_876973 Gm26637 - - 17 E3|17 predicted gene, 26637 protein-coding 73814 Mm.449993 4930403O15Rik - - 10|10 RIKEN cDNA 4930403O15 gene protein-coding 102637421 XR_390581 Gm34231 - - 4 B2-B3|4 predicted gene, 34231 ncRNA 100042401 Gm20914 - - Y|Y predicted gene, 20914 protein-coding 258990 Mm.377779 NM_146988 ENSMUSG00000045708 Olfr447 MOR261-1 - 6|6 B2.1 olfactory receptor 447 protein-coding 14663 Mm.219621 NM_008134 ENSMUSG00000022491 Glycam1 MC26|Sgp50|glyCAM-1 - 15 F3|15 59.03 cM glycosylation dependent cell adhesion molecule 1 protein-coding 329358 Mm.406444 XR_374150 ENSMUSG00000087028 Gm13387 D530008I23 - 2|2 A3 predicted gene 13387 ncRNA 102637760 XR_375933 Gm34490 - - 3 F2.2|3 predicted gene, 34490 ncRNA 102637834 XR_380567 Gm34544 - - 10 B5.3|10 predicted gene, 34544 ncRNA 102640903 XR_374627 Gm36857 - - 2 C2|2 predicted gene, 36857 ncRNA 78046 Mm.74625 4930563H03Rik - - 15|15 RIKEN cDNA 4930563H03 gene protein-coding 387516 Tas2r146-ps1 Tas2r46|mps1 - 6|6 G1 taste receptor, type 2, member 146, pseudogene 1 pseudo 258265 Mm.482029 NM_207157 ENSMUSG00000110947 Olfr1333 GA_x5J8B7TQTH0-2-774|MOR259-11|MOR259-6 - 4|4 D2.1 olfactory receptor 1333 protein-coding 100113455 Secia3 - - - small effect CIA locus 3 unknown 74282 Mm.450003 XR_879929 1700086D15Rik - - 11|11 B3 RIKEN cDNA 1700086D15 gene ncRNA 85181 D16Mit47 - - 16 36.36 cM DNA segment, Chr 16, Massachusetts Institute of Technology 47 unknown 77608 C330004N01Rik - - 17|17 B1 RIKEN cDNA C330004N01 gene ncRNA 102637648 XR_381255 Gm34407 - - 12 A1.1|12 predicted gene, 34407 ncRNA 102634067 XR_381878 Gm31742 - - 12 E|12 predicted gene, 31742 ncRNA 61845 D1Mit415 - - 1 43.94 cM DNA segment, Chr 1, Massachusetts Institute of Technology 415 unknown 353211 Mm.257354 NM_181348 ENSMUSG00000039126 Prune2 6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367 - 19|19 B prune homolog 2 protein-coding 102640519 Mm.145581 XR_384480 Gm36560 - - 15 F3|15 predicted gene, 36560 ncRNA 102638136 XR_385416 Gm34772 - - 17 A2|17 predicted gene, 34772 ncRNA 69797 Mm.307159 NR_028123 ENSMUSG00000046242 1600029I14Rik - - 9|9 E3.3 RIKEN cDNA 1600029I14 gene ncRNA 100417157 Gm18429 - - 3|3 G1 crumbs homolog 1 pseudogene pseudo 100217431 NR_028531 Snord69 MBII-210 - 14 B|14 small nucleolar RNA, C/D box 69 snoRNA 320216 Mm.436778 D230040J21Rik - - 5|5 RIKEN cDNA D230040J21 gene protein-coding 100039601 Gm10163 - - 9|9 E3.1 60S ribosomal protein L21 pseudogene pseudo 14798 gri - - - grey intense unknown 105122 Mm.221609 AI225925 - - - expressed sequence AI225925 unknown 228543 Mm.120274 NM_145530 ENSMUSG00000034226 Rhov A030005A06Rik|Arhv - 2|2 E5 ras homolog family member V protein-coding 399627 Mm.380351 D030007L05Rik - - - RIKEN cDNA D030007L05 gene protein-coding 100035522 Bmrbc1 - - - bone marrow RBC 1 unknown 100036053 Ath21 - - - atherosclerosis 21 unknown 257812 Olfr1007-ps1 EG257812|GA_x5J8B7W531T-1588603-1588734|Gm5020 - 2 D|2 olfactory receptor 1007, pseudogene 1 pseudo 105245256 XR_001779838 Gm40734 - - 10 C1|10 predicted gene, 40734 ncRNA 75342 Mm.483398 4930556J24Rik - - 11|11 RIKEN cDNA 4930556J24 gene protein-coding 74896 Mm.444661 NR_046307 ENSMUSG00000114412 4930405A10Rik 4930456G20Rik - 14|14 A3 RIKEN cDNA 4930405A10 gene ncRNA 258616 Mm.377594 NM_146623 ENSMUSG00000055838 Olfr357 MOR138-3 - 2|2 B olfactory receptor 357 protein-coding 111923 Iap3ra10 - - - intracisternal A-type particle, U3 region, SINE repeat a-10 other 102467533 n-TGgcc11 n-Tg16 - 8 D3|8 nuclear encoded tRNA glycine 11 (anticodon GCC) tRNA 140474 Mm.214599 NM_080457 ENSMUSG00000079620 Muc4 4933405I11Rik|Asgp - 16|16 B3 mucin 4 protein-coding 110521 Mm.4808 NM_007772 ENSMUSG00000021366 Hivep1 Cryabp1 - 13 A4|13 20.72 cM human immunodeficiency virus type I enhancer binding protein 1 protein-coding 108167807 Gm46222 - - 10 B2|10 predicted gene, 46222 pseudo 667496 Gm8666 EG667496 - X|X A7.3 predicted gene 8666 pseudo 100417934 Gm9894 - - 13|13 B3 zinc finger protein 85, related sequence 1 pseudogene pseudo 100035693 Dbm4 - - - diabetes modifier 4 unknown 433058 Ppp1r2-ps6 EG433058|Gm5490 - 17|17 A1 protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 6 pseudo 276952 Mm.66275 NM_001013386 ENSMUSG00000020684 Rasl10b B230331P10Rik|Gm729|VTS58635 - 11|11 C RAS-like, family 10, member B protein-coding 102631576 XR_389705 Gm29879 - - 3 B|3 predicted gene, 29879 ncRNA 100040615 Gm2866 - - 14|14 A1 predicted gene 2866 pseudo 780865 Ighv1-13 Gm17686 - 12|12 F2 immunoglobulin heavy variable V1-13 pseudo 74396 Mm.162493 NR_029443 ENSMUSG00000087396 4933407K13Rik A130080L05Rik|Dxz4 - X|X A7.3 RIKEN cDNA 4933407K13 gene ncRNA 668239 Rps13-ps5 Gm12270 - 11|11 B2 ribosomal protein S13, pseudogene 5 pseudo 105242792 Mm.341520 Adap2os Gm11206 - 11|11 47.56 cM ArfGAP with dual PH domains 2, opposite strand ncRNA 78409 2900079J23Rik - - 13|13 RIKEN cDNA 2900079J23 gene protein-coding 387243 NR_029587 ENSMUSG00000065549 Mir200b Mirn200b|mir-200b - 4|4 E2 microRNA 200b ncRNA 105245337 Gm40810 - - 10 D2|10 predicted gene, 40810 pseudo 102639069 XR_384322 Gm35471 - - 15 E3|15 predicted gene, 35471 ncRNA 61121 D2Mit502 - - 2 96.27 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 502 unknown 235279 Gm4893 EG235279 - 9|9 A5.1 Fcf1 pseudogene pseudo 102636812 XR_380633 Gm33781 - - 10 C1|10 predicted gene, 33781 ncRNA 102634712 XR_384894 Gm32231 - - 16 B5|16 predicted gene, 32231 ncRNA 56210 Mm.389103 NM_019570 ENSMUSG00000026082 Rev1 1110027I23Rik|AU022044|Rev1l - 1|1 B REV1, DNA directed polymerase protein-coding 62691 D17Mit108 - - 17 25.78 cM DNA segment, Chr 17, Massachusetts Institute of Technology 108 unknown 100042926 Mm.446515 NR_045895 ENSMUSG00000086862 Gm13546 - - 2|2 C1.1 predicted gene 13546 ncRNA 320851 D130012G24Rik - - 13|13 A5 RIKEN cDNA D130012G24 gene protein-coding 102638086 XR_373791 ENSMUSG00000103942 Gm34732 - - 1 H5|1 predicted gene, 34732 ncRNA 110189 Hkr1 Hkr-1 - - GLI-Kruppel family member HKR1 protein-coding 105244480 Gm40081 - - 3|3 predicted gene, 40081 ncRNA 320806 Mm.219675 NM_177266 ENSMUSG00000021666 Gfm2 6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt - 13|13 D1 G elongation factor, mitochondrial 2 protein-coding 97071 C79250 - - - expressed sequence C79250 unknown 64453 Mm.80609 NM_177475 ENSMUSG00000049764 Zfp280b D10Jhu82e|Suhw2 - 10|10 C1 zinc finger protein 280B protein-coding 105246862 XR_879798 Gm42072 - - 11 A4|11 predicted gene, 42072 ncRNA 102640653 Mm.417666 XR_868575 Gm36667 Gm42624 - 5 G2|5 predicted gene, 36667 ncRNA 23967 Mm.45055 NM_011859 ENSMUSG00000048387 Osr1 Odd1|Osr - 12 A1.1|12 4.05 cM odd-skipped related transcription factor 1 protein-coding 110548 Fdpsl3 - - - farnesyl diphosphate synthetase-like 3 protein-coding 110988 Rps2-ps1 Rps2-ps - - ribosomal protein S2, pseudogene 1 pseudo 102632407 Gm16570 - - 12|12 37.82 cM predicted gene 16570 pseudo 19946 Mm.358632 NM_009083 ENSMUSG00000058600 Rpl30 - - 15 B3.1|15 14.33 cM ribosomal protein L30 protein-coding 387172 NR_029564 ENSMUSG00000065448 Mir154 Mirn154|mir-154|mmu-mir-154 - 12 F1|12 microRNA 154 ncRNA 243897 Mm.389886 NM_182694 ENSMUSG00000031493 Ggn AI593290 - 7|7 B1 gametogenetin protein-coding 71252 XR_873384 4933433N18Rik - - 13 A5|13 RIKEN cDNA 4933433N18 gene ncRNA 100862598 Gm29699 - - 13|13 predicted gene, 29699 protein-coding 100416079 Gm2448 100039836 - 8|8 A1.1 peroxiredoxin 3 pseudogene pseudo 105245069 Mm.207605 XR_872976 Gm40571 - - 12 F1|12 predicted gene, 40571 ncRNA 108645 Mm.293771 NM_134017 ENSMUSG00000042032 Mat2b 1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR - 11|11 A5 methionine adenosyltransferase II, beta protein-coding 75694 Mm.395022 2310058D17Rik - - 11|11 RIKEN cDNA 2310058D17 gene ncRNA 62593 D13Mit111 - - 13 50.57 cM DNA segment, Chr 13, Massachusetts Institute of Technology 111 unknown 633683 Rps15-ps2 EG633683|Gm7121 - 6|6 B3 ribosomal protein S15, pseudogene 2 pseudo 387253 NR_029732 ENSMUSG00000065602 Mirlet7f-2 Mirlet7f2|Mirnlet7f2|let-7f-2 - X|X F3 microRNA let7f-2 ncRNA 100417853 Gm18864 - - 3|3 A2 predicted gene, 18864 pseudo 622127 Mm.359379 NM_001100180 ENSMUSG00000070419 Cyp3a57 EG622127 - 5|5 G2 cytochrome P450, family 3, subfamily a, polypeptide 57 protein-coding 102639856 Mm.120940 Gm36070 - - 3|3 predicted gene, 36070 ncRNA 27943 D7Nds2 - - 7 43.68 cM DNA segment, Chr 7, Nuffield Department of Surgery 2 unknown 58233 Mm.489676 NM_021422 ENSMUSG00000032285 Dnaja4 1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4 - 9|9 A5.3 DnaJ heat shock protein family (Hsp40) member A4 protein-coding 54384 Mm.294871 NM_019433 ENSMUSG00000039431 Mtmr7 - - 8|8 A4 myotubularin related protein 7 protein-coding 214239 Mm.379342 NM_001001982 ENSMUSG00000045838 A430105I19Rik Ccdc9b|Gm353 - 2|2 E5 RIKEN cDNA A430105I19 gene protein-coding 102467399 n-TVaac2 n-Tv2 - 13 A3.1|13 nuclear encoded tRNA valine 2 (anticodon AAC) tRNA 100417198 Gm18443 - - 1|1 A5 crumbs homolog 1 pseudogene pseudo 100416131 Gm12156 - - 11|11 B1.1 adenosine kinase pseudogene pseudo 58213 Mm.406330 NM_021404 AB041806 - - 4|4 D3 hypothetical protein, MNCb-2457 unknown 83553 Mm.25057 NM_031379 ENSMUSG00000031397 Tktl1 C79967 - X|X A7.3 transketolase-like 1 protein-coding 407833 Mm.436819 BC028454 - - - cDNA sequence BC028454 protein-coding 102636509 XR_874557 Gm8020 EG666280|Gm21754 - 14 B|14 predicted gene 8020 ncRNA 102635510 XR_381094 ENSMUSG00000085803 Gm12056 - - 11 A3.2|11 14.21 cM predicted gene 12056 ncRNA 102639179 XR_385706 Gm35550 - - 17 E1.1|17 predicted gene, 35550 ncRNA 15185 Mm.29854 NM_010413 ENSMUSG00000031161 Hdac6 Hd6|Hdac5|Sfc6|mHDA2 - X A1.1|X 3.58 cM histone deacetylase 6 protein-coding 102639223 XR_375414 Gm35582 - - 2 H4|2 predicted gene, 35582 ncRNA 380794 Mm.342177 Ighg AU044919|IGHG2A - 12|12 F2 Immunoglobulin heavy chain (gamma polypeptide) protein-coding 72171 Mm.256022 NM_181590 ENSMUSG00000035378 Shq1 2810403P18Rik|Grim-1 - 6|6 D3 SHQ1 homolog (S. cerevisiae) protein-coding 109938 Eis1 - - - proviral insertion eis1 protein-coding 108168170 XR_001781323 Gm46461 - - 14 D2|14 predicted gene, 46461 ncRNA 105242874 XR_880192 Gm38962 - - 11 D|11 predicted gene, 38962 ncRNA 26961 Mm.30066 NM_012053 ENSMUSG00000003970 Rpl8 - - 15|15 D3 ribosomal protein L8 protein-coding 110674 Idd1 Idd-1 - - insulin dependent diabetes susceptibility 1 unknown 67738 Mm.295252 NM_026352 ENSMUSG00000027804 Ppid 4930564J03Rik|CYP-40|Ppidl|Ppif - 3|3 E3 peptidylprolyl isomerase D (cyclophilin D) protein-coding 62929 D10Mit267 - - 10 67.55 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 267 unknown 108168646 XM_017318857 LOC108168646 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 666145 Mm.390564 XM_011244363 ENSMUSG00000085861 1700016G14Rik - - 13|13 A3.1 RIKEN cDNA 1700016G14 gene protein-coding 100416875 Gm14627 EG666136 - X|X A6 high mobility group box 1 pseudogene pseudo 674078 Ighv134 Q52|VHQ52.a24.72 - 12|12 Ig heavy chain V region 134 other 105243205 XR_870491 Gm39189 - - 8 B3.3|8 predicted gene, 39189 ncRNA 232413 Mm.90241 NM_177686 ENSMUSG00000053063 Clec12a CLL-1|D230024O04|KLRL1|Micl - 6|6 F3 C-type lectin domain family 12, member a protein-coding 102467455 n-TAcgc2 n-Ta21 - X F1|X nuclear encoded tRNA alanine 2 (anticodon CGC) tRNA 100034955 Plyid - - - Polymeric IgA dominance unknown 12503 Mm.217308 NM_031162 ENSMUSG00000005763 Cd247 4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz - 1 H2.3|1 73.14 cM CD247 antigen protein-coding 71950 Mm.6047 NM_028016 ENSMUSG00000012396 Nanog 2410002E02Rik|ENK|ecat4 - 6|6 F1 Nanog homeobox protein-coding 404492 Olfr1237-ps1 - - 2|2 E1 olfactory receptor 1237, pseudogene 1 pseudo 252829 Mm.222738 NM_145709 ENSMUSG00000074366 Obox5 C87544 - 7|7 A2 oocyte specific homeobox 5 protein-coding 668921 Gm9425 EG668921 - 2|2 G3 predicted gene 9425 pseudo 100416791 Gm18253 - - 10|10 B4 predicted gene, 18253 pseudo 108168999 XR_001784537 Gm46887 - - 4 C3|4 predicted gene, 46887 ncRNA 27926 D0Ffm1 1C7a - - DNA segment, Universitat Frankfurt, Frankfurt/Main 1 unknown 52230 D5Ertd121e - - 5 12.35 cM DNA segment, Chr 5, ERATO Doi 121, expressed unknown 100036307 Drsi - - - DCC-related Spp1 induction unknown 55927 Mm.280029 NM_019479 ENSMUSG00000067071 Hes6 AI326893|bHLHb41 - 1|1 D hairy and enhancer of split 6 protein-coding 61297 D2Mit289 - - 2 85.68 cM DNA segment, Chr 2, Massachusetts Institute of Technology 289 unknown 229694 Mm.347584 NM_173787 ENSMUSG00000056145 AI504432 A230102G19 - 3|3 F2.3 expressed sequence AI504432 ncRNA 71836 Mm.49460 NM_001033162 ENSMUSG00000042708 Shcbp1l 1700012A16Rik - 1|1 G3 Shc SH2-domain binding protein 1-like protein-coding 231580 Mm.276647 NM_153569 ENSMUSG00000062234 Gak D130045N16Rik - 5|5 F cyclin G associated kinase protein-coding 100417333 Gm13153 Gm18536 - 4|4 E1 high mobility group box 1-like pseudogene pseudo 381405 Mm.296323 NM_001005425 ENSMUSG00000056824 Zfp663 Gm1008 - 2|2 H3 zinc finger protein 663 protein-coding 105244555 XR_867630 Gm40148 - - 3 G2|3 predicted gene, 40148 ncRNA 61367 D4Mit201 - - 4 57.11 cM DNA segment, Chr 4, Massachusetts Institute of Technology 201 unknown 111910 Pltr5 - - - polytropic long terminal repeat containing proviral locus 5 other 108169178 XR_001785407 Gm46981 - - 6 G2|6 predicted gene, 46981 ncRNA 382522 Mm.377898 NR_134309 ENSMUSG00000080712 Hist3h2bb-ps 4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370 - 11|11 B1.3 histone cluster 3, H2bb, pseudogene pseudo 51915 D3Ertd211e - - - DNA segment, Chr 3, ERATO Doi 211, expressed unknown 100417241 Gm18477 - - 11|11 A5 Kruppel-like factor 2 (lung) pseudogene pseudo 105245749 XR_874596 ENSMUSG00000115215 Gm41148 - - 14 C1|14 predicted gene, 41148 ncRNA 61053 D7Mit265 - - 7 13.97 cM DNA segment, Chr 7, Massachusetts Institute of Technology 265 unknown 108168718 XR_001783056 LOC108168718 - - - uncharacterized LOC108168718 ncRNA 108167641 XR_001779100 Gm46105 - - 9 A4|9 predicted gene, 46105 ncRNA 102635239 XR_877747 Gm32629 - - 19 B|19 predicted gene, 32629 ncRNA 12394 Mm.4081 NM_009821 ENSMUSG00000022952 Runx1 AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b - 16 C4|16 53.7 cM runt related transcription factor 1 protein-coding 100040505 Gm9923 - - 10|10 B5.3 Hbs1-like pseudogene pseudo 78627 1700063I16Rik - - 1|1 RIKEN cDNA 1700063I16 gene protein-coding 102467285 n-TCgca46 n-Tc46 - 6 B2.3|6 nuclear encoded tRNA cysteine 46 (anticodon GCA) tRNA 70906 4921522E08Rik - - - RIKEN cDNA 4921522E08 gene protein-coding 20392 Mm.8739 NM_011360 ENSMUSG00000004631 Sgce e-SG - 6 A1|6 1.81 cM sarcoglycan, epsilon protein-coding 102639257 XR_386742 Gm35610 - - 19 C3|19 predicted gene, 35610 ncRNA 28085 D11Wsu48e - - 11 51.82 cM DNA segment, Chr 11, Wayne State University 48, expressed unknown 21060 T(11B1;16B5)233Dn T(11;16)233Dn|T233Dn - - reciprocal translocation, Chr 11, cytogenetic band B1 and Chr 16, cytogenetic band B5, Davisson 233 other 68690 Mm.342009 NR_045139 1110028F11Rik - - 11|11 C RIKEN cDNA 1110028F11 gene ncRNA 100102 Mm.133268 NM_153565 ENSMUSG00000044254 Pcsk9 AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9 - 4|4 C7 proprotein convertase subtilisin/kexin type 9 protein-coding 102635242 XR_867582 Gm32632 - - 3 G1|3 predicted gene, 32632 ncRNA 623122 Gm11877 - - 4|4 A3 SET pseudogene pseudo 114077 Axtofa4 - - - anxiety-open field activity 4 unknown 12575 Mm.195663 NM_007669 ENSMUSG00000023067 Cdkn1a CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF - 17 A3.3|17 15.12 cM cyclin-dependent kinase inhibitor 1A (P21) protein-coding 110066 Tcrd Tcrdelta - 14 C2|14 T cell receptor delta chain protein-coding 258015 Olfr1439-ps1 MOR214-7P - 19|19 A olfactory receptor 1439, pseudogene 1 pseudo 100039061 Gm20797 - - 8|8 A2 defensin, alpha pseudogene pseudo 108167453 XR_001778246 Gm45997 - - 7 E3|7 predicted gene, 45997 ncRNA 100418370 Gm19166 - - 3|3 H1 human immunodeficiency virus type I enhancer binding protein 1 pseudogene pseudo 16904 Mm.378960 NM_008504 ENSMUSG00000054206 Gzmm Lmet1|MMET-1 - 10 C1|10 39.72 cM granzyme M (lymphocyte met-ase 1) protein-coding 637541 XM_017312480 Gm7207 EG637541 - 7|7 A1 predicted gene 7207 protein-coding 545718 Gm13141 - - 4|4 E1 predicted gene 13141 protein-coding 672214 NM_001178039 Gm10136 - - 19|19 C1 ribosomal protein L26 pseudogene pseudo 17071 Mm.377095 NM_008530 ENSMUSG00000022583 Ly6f - - 15|15 D3 lymphocyte antigen 6 complex, locus F protein-coding 78111 Mm.243826 NM_183130 4930451E10Rik - - 13|13 B1 RIKEN cDNA 4930451E10 gene unknown 74461 4933416A02Rik - - 15|15 RIKEN cDNA 4933416A02 gene protein-coding 100036402 Ftm5 - - - total body fat tissue mass 5 unknown 105243875 XR_872268 Gm39601 - - 11 A3.1|11 predicted gene, 39601 ncRNA 105245111 Gm40605 - - 10|10 predicted gene, 40605 ncRNA 16976 Mm.277661 NM_013587 ENSMUSG00000029103 Lrpap1 AA617339|AI790446|AU042172|C77774|HBP44|RAP - 5 B2|5 18.01 cM low density lipoprotein receptor-related protein associated protein 1 protein-coding 102631998 XR_384352 Gm30181 - - 15 E3|15 predicted gene, 30181 pseudo 62946 D11Mit327 - - 11 54.6 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 327 unknown 107422 Prid1 Pid-1|Pid1 - - prior incubation determinant 1 unknown 100504170 Mm.484623 Gm20099 - - 2|2 13.01 cM predicted gene, 20099 unknown 668162 Gm9013 EG668162 - 14|14 D1 ribosomal protein S2 pseudogene pseudo 26891 Mm.957 NM_012001 ENSMUSG00000035297 Cops4 AW208976|D5Ertd774e|SGN4 - 5 E4|5 48.49 cM COP9 signalosome subunit 4 protein-coding 234915 Mm.101341 NM_001045524 ENSMUSG00000040729 Cep126 mKIAA1377 - 9|9 A1 centrosomal protein 126 protein-coding 102639825 Gm36047 - - Y|Y predicted gene, 36047 protein-coding 102638218 Gm34831 - - 17|17 predicted gene, 34831 pseudo 105246915 XR_880428 Gm42111 - - 5 E2|5 predicted gene, 42111 ncRNA 109527 Nidd1n Nidd1nsy - 11 33.94 cM non-insulin-dependent diabetes mellitus 1 in NSY unknown 70870 Mm.114886 4921516I12Rik 1700034N18Rik - 12|12 RIKEN cDNA 4921516I12 gene protein-coding 21016 T(1;2)5Ca T5Ca - - reciprocal translocation, Chr 1 and 2, Carter 5 other 100035629 Nsila9 - - - novelty/stress induced locomotor activation 9 unknown 69815 Mm.389609 NM_027221 ENSMUSG00000029149 Krtcap3 2010001C09Rik|AW321088|Kcp3 - 5|5 B1 keratinocyte associated protein 3 protein-coding 100504249 Mm.441494 NR_045775 ENSMUSG00000084780 Gm15350 - - 8 A1.1|8 5.73 cM predicted gene 15350 ncRNA 74190 Mm.248640 NM_028807 ENSMUSG00000021280 Exoc3l4 1200009I06Rik|1600013K19Rik - 12|12 F1 exocyst complex component 3-like 4 protein-coding 258324 Mm.329044 NM_146327 ENSMUSG00000081724 Olfr129 MOR263-9 - 17|17 B1 olfactory receptor 129 protein-coding 240892 Mm.35315 NM_001033344 ENSMUSG00000026564 Dusp27 C130085G02Rik|Gm209 - 1|1 H2.3 dual specificity phosphatase 27 (putative) protein-coding 667877 Gm8856 EG667877 - 1|1 F cytokine receptor-like factor 3 pseudogene pseudo 102635457 Gm15418 - - 8|8 5.52 cM predicted gene 15418 ncRNA 100862271 LOC100862271 - - - PRAME family member 8-like pseudo 106610 Mm.441777 AI504002 - - - expressed sequence AI504002 unknown 665369 Ap3s1-ps1 Ap3s1-rs1|EG665369|Gm7603 - X|X A3.3 adaptor-related protein complex 3, sigma 1 subunit, pseudogene 1 pseudo 70425 Mm.368668 NM_152809 ENSMUSG00000073563 Csnk1g3 3300002K07Rik|C330049O21Rik - 18|18 D1 casein kinase 1, gamma 3 protein-coding 111393 Emv21 Emv-21 - - endogenous ecotropic MuLV 21 other 78462 Mm.82775 NR_040315 ENSMUSG00000099435 1700065I16Rik 1700084L08Rik - 15 D1|15 gasdermin pseudogene pseudo 102640499 XR_374854 Gm36544 - - 2 E3|2 predicted gene, 36544 ncRNA 108168936 XM_017320480 LOC108168936 - - 4 A5 uncharacterized LOC108168936 protein-coding 73952 4930420N18Rik - - 1|1 RIKEN cDNA 4930420N18 gene protein-coding 100034945 Alprf - - 15 41.96 cM alcohol preference unknown 666042 Gm13445 - - 2|2 B predicted gene 13445 pseudo 13320 Del(7)56H Del56H - - deletion, Chr 7, Harwell 56 other 27707 D1Dau18 - - - DNA segment, Chr 1, DA Underhill 18 unknown 100504354 Mm.479962 Gm20982 - - 2|2 predicted gene, 20982 unknown 100042904 Gm15318 - - 17|17 A3.3 predicted gene 15318 protein-coding 56869 Mm.103751 NM_020262 ENSMUSG00000074283 Zfp109 - - 7|7 A3 zinc finger protein 109 protein-coding 102634866 Gm28765 - - Y|Y predicted gene 28765 ncRNA 621239 Mm.381070 NM_001039038 ENSMUSG00000090113 Nhlrc4 F430201B04Rik - 17|17 A3.3 NHL repeat containing 4 protein-coding 102635946 Mm.82745 XR_384701 ENSMUSG00000087526 Gm33155 - - 16 A1|16 predicted gene, 33155 ncRNA 111316 Hmgn2-rs17 Hmg17-rs17 - - high mobility group nucleosomal binding domain 2, related sequence 17 pseudo 171246 Mm.377202 NM_134212 ENSMUSG00000101073 Vmn1r200 V1rh3 - 13|13 A3.1 vomeronasal 1 receptor 200 protein-coding 83703 Mm.31324 NM_031403 ENSMUSG00000032469 Dbr1 AW018415 - 9|9 E3.3 debranching RNA lariats 1 protein-coding 258167 Mm.223246 NM_001011535 ENSMUSG00000090097 Olfr1182 Gm13757|MOR225-7P|MOR225-8P|Olfr1536-ps1 - 2|2 D olfactory receptor 1182 protein-coding 665191 Gm7537 EG665191 - 13|13 A2 CNDP dipeptidase 2 (metallopeptidase M20 family) pseudogene pseudo 67112 Mm.154211 NM_023304 ENSMUSG00000020327 Fgf22 2210414E06Rik|FGF-22 - 10|10 C1 fibroblast growth factor 22 protein-coding 102631920 Gm30130 - - 5|5 predicted gene, 30130 ncRNA 27717 D1Dau34 - - - DNA segment, Chr 1, DA Underhill 34 unknown 102637062 XR_384433 Gm33967 - - 15 F1|15 predicted gene, 33967 ncRNA 100040366 Gm2736 - - 13 D2.1|13 predicted gene 2736 pseudo 75543 Mm.489052 NR_126478 ENSMUSG00000113770 1700019C18Rik - - 13|13 A3.3 RIKEN cDNA 1700019C18 gene ncRNA 17840 Mm.335875 NM_031188 ENSMUSG00000078683 Mup1 Ltn-1|Lvtn-1|Mup-1|Mup-a|Mup10|Mup7|Up-1 - 4 B3|4 32.85 cM major urinary protein 1 protein-coding 102631772 Mm.443962 Gm30025 - - 12|12 predicted gene, 30025 ncRNA 102636612 XR_381913 Gm33628 - - 12 F1|12 predicted gene, 33628 ncRNA 100504172 Gm15171 - - X|X 72.64 cM dnaJ homolog subfamily C member 15-like pseudo 102640009 XR_387612 Gm36185 - - 5 F|5 predicted gene, 36185 ncRNA 78271 Mm.483419 5330427O13Rik - - 14|14 RIKEN cDNA 5330427O13 gene ncRNA 111798 Iapls3-21 - - - intracisternal A particle, lymphocyte specific 3-21 other 105245544 XR_873612 Gm40989 - - 13 B3|13 predicted gene, 40989 ncRNA 28167 DYzEms18 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 18 unknown 18671 Mm.207354 NM_011076 ENSMUSG00000040584 Abcb1a Abcb4|Evi32|Mdr1a|Mdr3|P-gp|Pgp|Pgy-3|Pgy3|mdr-3 - 5 A1|5 3.43 cM ATP-binding cassette, sub-family B (MDR/TAP), member 1A protein-coding 16783 Mm.16716 NM_010684 ENSMUSG00000031447 Lamp1 CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk - 8 A1.1|8 5.73 cM lysosomal-associated membrane protein 1 protein-coding 78699 C330022B21Rik - - 13|13 B3 RIKEN cDNA C330022B21 gene unknown 62850 D12Mit199 - - 12 22.85 cM DNA segment, Chr 12, Massachusetts Institute of Technology 199 unknown 100647 Mm.3089 NM_175309 ENSMUSG00000042985 Upk3b AI447729|AI957187|P35|PMS2L14|UpIIIb - 5|5 G2 uroplakin 3B protein-coding 223726 Mm.36395 NM_172610 ENSMUSG00000041708 Mpped1 6230403M19|AW456965|D15Bwg0669e - 15 E1|15 39.44 cM metallophosphoesterase domain containing 1 protein-coding 66310 Mm.28536 NM_024428 ENSMUSG00000024067 Dpy30 2810410M20Rik|C87842 - 17|17 E2 dpy-30, histone methyltransferase complex regulatory subunit protein-coding 14102 Mm.1626 NM_007987 ENSMUSG00000024778 Fas AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr - 19 C1|19 29.48 cM Fas (TNF receptor superfamily member 6) protein-coding 102636077 XR_388798 Gm33249 - - 11 B4|11 predicted gene, 33249 ncRNA 103203 Mm.339029 AI413759 - - - expressed sequence AI413759 protein-coding 224344 Mm.273214 NM_198302 ENSMUSG00000032940 Rbm11 A330018F01 - 16|16 C3.1 RNA binding motif protein 11 protein-coding 79560 Mm.338784 NM_024475 ENSMUSG00000041231 Ublcp1 4930527B16Rik|8430435I17Rik|BC002236 - 11|11 B1.1 ubiquitin-like domain containing CTD phosphatase 1 protein-coding 69833 Mm.279861 NM_027231 ENSMUSG00000033020 Polr2f 1810060D16Rik|RPB6 - 15 E1|15 37.7 cM polymerase (RNA) II (DNA directed) polypeptide F protein-coding 100503927 Gm19969 - - 17|17 22.85 cM DNA-directed RNA polymerases I, II, and III subunit RPABC4-like pseudo 624696 Gm6522 EG624696 - 3|3 F2.2 chitinase 3-like 3 pseudogene pseudo 404556 AL024322 - - - expressed sequence AL024322 unknown 56233 Mm.384027 NM_019572 ENSMUSG00000022475 Hdac7 5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062 - 15|15 F1 histone deacetylase 7 protein-coding 626150 Gm12271 H3mm17 - 11|11 B2 predicted gene 12271 pseudo 100534282 Gm13130 - - 4|4 E1 PRAME family member 6 pseudogene pseudo 17533 Mm.2019 NM_008625 ENSMUSG00000026712 Mrc1 AW259686|CD206|MR - 2 A2|2 10.46 cM mannose receptor, C type 1 protein-coding 242022 Mm.38378 NM_172862 ENSMUSG00000037016 Frem2 6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1 - 3 C|3 25.24 cM Fras1 related extracellular matrix protein 2 protein-coding 546363 Gm5944 EG546363 - X|X E1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 57262 Mm.441868 NM_020509 ENSMUSG00000061100 Retnla 1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2 - 16 B5|16 30.75 cM resistin like alpha protein-coding 75862 Mm.109191 NR_045718 ENSMUSG00000114916 4930572O13Rik - - 14|14 A3 RIKEN cDNA 4930572O13 gene ncRNA 108167478 Gm45034 - - 7 A3|7 predicted gene 45034 pseudo 17647 Ms63 MMS63 - - minisatellites detected by probe MMS63 other 100417345 Gm18548 - - 2|2 A3 makorin, ring finger protein, 1 pseudogene pseudo 13253 Del(1)58H Del58H - - deletion, Chr 1, Harwell 58 other 66959 Mm.23916 NM_025869 ENSMUSG00000039661 Dusp26 2310043K02Rik|Skrp3 - 8|8 A3 dual specificity phosphatase 26 (putative) protein-coding 108169181 XR_001785425 LOC108169181 - - 6 E3 uncharacterized LOC108169181 pseudo 69573 Mm.45161 NM_023516 ENSMUSG00000043421 Hilpda 2310016C08Rik|AW049004|Hig2 - 6|6 A3.3 hypoxia inducible lipid droplet associated protein-coding 61341 D3Mit216 - - 3 54.48 cM DNA segment, Chr 3, Massachusetts Institute of Technology 216 unknown 52882 Mm.100348 NM_029879 ENSMUSG00000021719 Rgs7bp A930030I01Rik|AI842293|D13Bwg1146e|R7bp - 13 D1|13 56.9 cM regulator of G-protein signalling 7 binding protein protein-coding 78422 9530039L23Rik - - 19|19 RIKEN cDNA 9530039L23 gene protein-coding 102467557 n-TLcag10 n-Tl22 - 13 A3.1|13 nuclear encoded tRNA leucine 10 (anticodon CAG) tRNA 105244260 Gm39901 - - 2|2 predicted gene, 39901 ncRNA 641453 Mm.296528 F730048M01Rik - - 18|18 RIKEN cDNA F730048M01 gene unknown 319965 Mm.151129 NM_177045 ENSMUSG00000028582 Cc2d1b A830039B04Rik|Freud2 - 4|4 C7 coiled-coil and C2 domain containing 1B protein-coding 624814 Gm12251 - - 11|11 B1.3 NADH dehydrogenase (ubiquinone) Fe-S protein 3 pseudogene pseudo 328953 Mm.246768 NR_033454 Gm5095 A730092B10 - 18 C|18 predicted gene 5095 ncRNA 73795 Mm.410830 XR_876111 4930405D01Rik - - 16|16 B5 RIKEN cDNA 4930405D01 gene ncRNA 102632704 Gm14877 - - X D|X 47.36 cM predicted gene 14877 pseudo 19552 Rb(4.15)4Rma Rb4Rma - - Robertsonian translocation, Chr 4 and 15, Universita di Roma 4 other 100504026 Mm.426764 NR_040340 ENSMUSG00000086628 Gm16157 - - 7 C|7 37.49 cM predicted gene 16157 ncRNA 75812 Mm.293449 NM_175225 ENSMUSG00000039033 Tasp1 4930485D02Rik|AW986064 - 2|2 F3 taspase, threonine aspartase 1 protein-coding 102633034 XR_373986 Gm30957 - - 2 A1|2 predicted gene, 30957 ncRNA 102632656 Gm30677 - - 4|4 predicted gene, 30677 ncRNA 62619 D13Mit185 - - 13 30.4 cM DNA segment, Chr 13, Massachusetts Institute of Technology 185 unknown 112064 Mop1 - - 6 64.03 cM morphine preference 1 unknown 233890 Mm.23031 NM_146202 ENSMUSG00000047371 Zfp768 BC026432|Znf768 - 7|7 F3 zinc finger protein 768 protein-coding 245904 Lcl - - - lens cloudy unknown 105246911 Gm42108 - - 5|5 predicted gene, 42108 ncRNA 116951 Naad7 - - - Neu associated allelic deletion 7 other 19627 Rb(9.11)14Tu Rb14Tu - - Robertsonian translocation, Chr 9 and 11, Tubingen 14 other 108391 C58v2 C58v-2 - - C58 endogenous ecotropic virus 2 other 100042404 Gm3829 - - 13 B3|13 high mobility group box 3 pseudogene pseudo 105242427 Gm38697 - - 5 A1|5 predicted gene, 38697 pseudo 768252 Mm.129645 NR_003248 ENSMUSG00000097072 Foxl2os - - 9 E3.3|9 forkhead box L2, opposite strand ncRNA 102636971 XR_390889 Gm33895 - - 4 D3|4 predicted gene, 33895 ncRNA 435975 Mm.469897 NM_001105060 ENSMUSG00000090751 Vmn2r63 EG435975 - 7|7 B3 vomeronasal 2, receptor 63 protein-coding 100502738 Mm.22379 9030411K21Rik - - 9|9 RIKEN cDNA 9030411K21 gene unknown 100042593 Trav13n-2 Gm10900 - 14|14 C2 T cell receptor alpha variable 13N-2 other 228116 Mm.246588 NR_152125 ENSMUSG00000087061 A130030D18Rik Gm558 - 2|2 D RIKEN cDNA A130030D18 gene ncRNA 12391 Mm.3924 NM_007617 ENSMUSG00000062694 Cav3 AI385751|Cav-3|M-cav - 6 E3|6 52.26 cM caveolin 3 protein-coding 74315 Mm.156771 NM_028862 ENSMUSG00000019189 Rnf145 3732413I11Rik|TMRF1 - 11|11 B1.1 ring finger protein 145 protein-coding 102220 Mm.491192 E330037G11Rik AU018912 - 8|8 A1.1 RIKEN cDNA E330037G11 gene unknown 108168826 XR_001783608 Gm46783 - - 2 H4|2 predicted gene, 46783 ncRNA 111657 Ms25 MMS25 - - minisatellites detected by probe MMS25 other 102640423 Mm.145435 Gm36487 - - 17|17 predicted gene, 36487 ncRNA 320669 Mm.446721 A230092J17Rik - - 12|12 RIKEN cDNA A230092J17 gene protein-coding 105242394 XR_870922 Gm38678 - - 9 D|9 predicted gene, 38678 ncRNA 111218 Mxi1-rs1 - - - Max interacting protein 1, related sequence 1 pseudo 100043069 Mm.431911 Gm4207 Vmn1r-ps81 - 7|7 A3 vomeronasal 1 receptor Vmn1r-ps81 pseudogene pseudo 100039641 Mm.170402 NR_033640 ENSMUSG00000085600 E330012B07Rik Gm15768 - 6 G3|6 RIKEN cDNA E330012B07 gene ncRNA 102633399 XR_379936 Gm31234 - - 9 F3|9 predicted gene, 31234 ncRNA 402737 Mm.441309 A130014A01Rik - - 8|8 RIKEN cDNA A130014A01 gene protein-coding 109525 Nidd3n Nidd3nsy - - non-insulin-dependent diabetes mellitus 3 in NSY unknown 102640616 XR_392297 Gm28133 CH36-169F23.1 - Y C3|Y predicted gene 28133 ncRNA 100862125 Gm21497 - - Y|Y predicted gene, 21497 protein-coding 666240 Gm8000 EG666240 - 15|15 D3 predicted gene 8000 pseudo 229658 Mm.118004 NM_177545 ENSMUSG00000027860 Vangl1 Kitenin|Lpp2|Stb2|Stbm - 3|3 F2.2 VANGL planar cell polarity 1 protein-coding 258222 Mm.377384 NM_001011520 ENSMUSG00000057540 Olfr310 MOR227-6P - 7|7 D3 olfactory receptor 310 protein-coding 668205 Gm9045 EG668205 - 10 D2|10 predicted gene 9045 pseudo 328166 XR_381995 Gm26583 C130036K02 - 12|12 F1 predicted gene, 26583 ncRNA 102637696 XR_382405 Gm34439 - - 13 B1|13 predicted gene, 34439 ncRNA 240894 Mm.246610 NM_172844 ENSMUSG00000026560 Fmo9 4831428F09Rik - 1|1 H2.3 flavin containing monooxygenase 9 protein-coding 62204 D15Mit88 - - 15 25.7 cM DNA segment, Chr 15, Massachusetts Institute of Technology 88 unknown 11592 ag - - - agitans unknown 241528 Mm.291095 NM_001033346 ENSMUSG00000075224 Lrrc55 A330097E02Rik|Gm351 - 2|2 D leucine rich repeat containing 55 protein-coding 236479 Gm4903 EG236479 - 7|7 A1 predicted gene 4903 pseudo 102633799 XR_391301 Gm29087 - - 7 B3|7 predicted gene 29087 ncRNA 213582 Mm.271269 NM_001081230 ENSMUSG00000033900 Map9 5033421J10Rik|5330427D05Rik|ASAP|Mtap9 - 3|3 E3 microtubule-associated protein 9 protein-coding 231724 Mm.255587 NM_144912 ENSMUSG00000038569 Rad9b A630082N15Rik|BC021784 - 5|5 F RAD9 checkpoint clamp component B protein-coding 629636 Gm11502 - - 11|11 D predicted gene 11502 pseudo 102640261 XR_376071 Gm36373 - - 3 G3|3 predicted gene, 36373 ncRNA 20911 Mm.7247 NM_011503 ENSMUSG00000004626 Stxbp2 C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1 - 8 A1.1|8 1.92 cM syntaxin binding protein 2 protein-coding 619697 Mm.469848 NM_001104580 ENSMUSG00000090966 Vmn2r116 EG619697|V2Rp5 - 17|17 A3.3 vomeronasal 2, receptor 116 protein-coding 110464 Tcra-VBWB - - - T cell receptor alpha, variable BWB other 227292 Mm.165042 NM_153088 ENSMUSG00000026176 Ctdsp1 GIP|NLIIF|Nif3|SCP1 - 1|1 C3 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 protein-coding 102635280 XR_386337 Gm32661 - - 18 E2|18 predicted gene, 32661 ncRNA 224092 Mm.567 NM_178069 ENSMUSG00000022538 Lsg1 5830465I20|AA409273|D16Bwg1547e - 16 B2|16 21.34 cM large 60S subunit nuclear export GTPase 1 protein-coding 493115 Alcw5 - - 1 39.16 cM alcohol withdrawal 5 unknown 102216272 Mm.301148 NM_027592 ENSMUSG00000078941 Ak6 2810046E22Rik|4921516M08Rik|AK/ATPase - 13 D1|13 adenylate kinase 6 protein-coding 226122 Mm.22948 NM_145500 ENSMUSG00000025171 Ubtd1 BC016129 - 19|19 C3 ubiquitin domain containing 1 protein-coding 320099 Mm.326729 NR_152126 BC106179 - - 16|16 B1 cDNA sequence BC106179 ncRNA 544807 XR_880152 Gm11546 - - 11 D|11 predicted gene 11546 protein-coding 78629 Mm.398236 NR_131109 1700072I22Rik - - 11|11 E1 RIKEN cDNA 1700072I22 gene ncRNA 99712 Mm.429443 NM_133869 ENSMUSG00000040774 Cept1 9930118K05Rik|mCEPT1 - 3|3 F2.3 choline/ethanolaminephosphotransferase 1 protein-coding 102632921 Gm30872 - - 6|6 predicted gene, 30872 ncRNA 100503515 Gm19741 - - 11 B5|11 46.74 cM e3 SUMO-protein ligase NSE2-like pseudo 105242703 XR_869210 Gm38847 - - 6 C3|6 predicted gene, 38847 ncRNA 100416157 Gm17945 - - 12|12 C3 calponin 3, acidic pseudogene pseudo 109677 Eox1 Eox-1 - - ocular oxidase 1 protein-coding 100034771 Tshp9 QTL-TSH11.1 - 11 5.78 cM tooth shape 9 unknown 665964 XR_870905 Uba52-ps EG665964|Gm7866 - 9|9 D ubitquitin A-52 residue ribosomal protein fusion product 1, pseudogene pseudo 102633966 Gm31663 - - 7 E1|7 predicted gene, 31663 pseudo 102465572 NR_105914 ENSMUSG00000098961 Mir6949 Gm27697|mmu-mir-6949 - 14|14 C3 microRNA 6949 ncRNA 108167845 XR_001779925 Gm46249 - - 1 H4|1 predicted gene, 46249 ncRNA 100524 AA516956 - - - expressed sequence AA516956 unknown 100041027 Gm3103 - - 5|5 G2 predicted gene 3103 pseudo 632671 Mm.469837 NM_001102582 ENSMUSG00000091794 Vmn2r18 EG632671|Vn2r18 - 5|5 G3 vomeronasal 2, receptor 18 protein-coding 22078 Ts(1<13>)70H - - - trisomy, Chr 1 & 13 Harwell 70 other 68537 Mm.236795 NM_026759 ENSMUSG00000022370 Mrpl13 1110002D09Rik - 15|15 D1 mitochondrial ribosomal protein L13 protein-coding 100042563 Gm20927 - - Y|Y predicted gene, 20927 protein-coding 208898 Mm.41035 NM_001081153 ENSMUSG00000062151 Unc13c 1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3 - 9 D|9 40.8 cM unc-13 homolog C (C. elegans) protein-coding 110067 Tcrg TCRGV1S1|TCRGV2S1|TCRGV3S1|TCRGV5S3 - 13 A2|13 T cell receptor gamma chain protein-coding 116525 Obq12 - - 5 28.55 cM obesity QTL 12 unknown 15278 Mm.293529 NM_008249 ENSMUSG00000026492 Tfb2m Hkp1 - 1 H4|1 83.56 cM transcription factor B2, mitochondrial protein-coding 668197 Gm9039 EG668197 - 12|12 A1.1 predicted gene 9039 pseudo 102638309 XR_382605 Gm34903 - - 13 B3|13 predicted gene, 34903 ncRNA 67019 Mm.335292 NM_025914 ENSMUSG00000019948 Actr6 2010200J04Rik|AU044443|Arp6|ArpX|CDA12 - 10|10 C2 ARP6 actin-related protein 6 protein-coding 244071 Mm.322829 NM_172902 ENSMUSG00000025754 Agbl1 Ccp4|D430020F16|EG244071|Nna1-l1 - 7|7 D1-D2 ATP/GTP binding protein-like 1 protein-coding 629761 Mm.389336 NM_001161806 ENSMUSG00000078940 Wfdc11 - - 2|2 H3 WAP four-disulfide core domain 11 protein-coding 21752 Mm.10109 NM_009354 ENSMUSG00000021611 Tert EST2|TCS1|TP2|TR|TRT - 13 C1|13 40.12 cM telomerase reverse transcriptase protein-coding 108168130 n-TMcat2 Trnam-cau|n-Tm2 - 13 A3.1|13 nuclear encoded tRNA methionine 2 (anticodon CAT) tRNA 100316702 NR_130331 ENSMUSG00000077086 Mir669o mmu-mir-669o - 2 A1|2 8.22 cM microRNA 669o ncRNA 100036335 Idd21.2 Idd21.3|Idd21b - 18 34.41 cM insulin dependent diabetes susceptibility 21.2 unknown 319560 Mm.403176 XR_872808 9630002D21Rik - - 12|12 C3 RIKEN cDNA 9630002D21 gene ncRNA 100526504 NR_037282 ENSMUSG00000092659 Mir3100 mir-3100|mmu-mir-3100 - 7 A3|7 9.46 cM microRNA 3100 ncRNA 100043191 Gm4287 - - 6|6 D1 RAD23b homolog pseudogene pseudo 407817 Mm.441226 BC059050 - - - cDNA sequence BC059050 protein-coding 546770 XM_011239909 Olfr1175-ps MOR174-15P|Olfr1175 - 2|2 D olfactory receptor 1175, pseudogene pseudo 78309 Mm.329076 NM_001081335 ENSMUSG00000040327 Cul9 1810035I07Rik|Cul-9|Parc|mKIAA0708 - 17|17 C cullin 9 protein-coding 102637601 Mm.421294 Gm34368 - - 8|8 predicted gene, 34368 ncRNA 67869 Mm.126534 NM_026420 ENSMUSG00000037058 Paip2 2310050K10Rik|AU045972 - 18|18 B2 polyadenylate-binding protein-interacting protein 2 protein-coding 100124445 NR_030567 ENSMUSG00000077998 Mir466f-2 Mirn466f-2 - 2 A1|2 microRNA 466f-2 ncRNA 76089 Mm.31220 NM_001099624 ENSMUSG00000062232 Rapgef2 5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP - 3|3 E3 Rap guanine nucleotide exchange factor (GEF) 2 protein-coding 105242940 XR_882075 Gm39012 - - 7 B3|7 predicted gene, 39012 ncRNA 235256 Mm.377253 NM_207138 ENSMUSG00000062121 Olfr149 M31|MOR224-8 - 9|9 A5.1 olfactory receptor 149 protein-coding 102635143 NR_151592 Gm28626 - - 1 C5|1 predicted gene 28626 ncRNA 69146 Mm.27385 NM_026960 ENSMUSG00000022575 Gsdmd 1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4 - 15|15 D3 gasdermin D protein-coding 56433 Mm.216528 NM_019780 ENSMUSG00000029462 Vps29 2010015D08Rik|AW049835|PEP11 - 5|5 F VPS29 retromer complex component protein-coding 102635178 XR_868005 Gm32581 - - 4 C7|4 predicted gene, 32581 ncRNA 16392 Mm.42242 NM_021459 ENSMUSG00000042258 Isl1 - - 13|13 D2.2 ISL1 transcription factor, LIM/homeodomain protein-coding 319306 A730099G02Rik - - 10|10 RIKEN cDNA A730099G02 gene protein-coding 76611 Mm.358776 1700071A11Rik - - 9|9 B RIKEN cDNA 1700071A11 gene protein-coding 110751 Mm.108550 NM_033615 ENSMUSG00000027318 Adam33 Adaml - 2 F1|2 63.26 cM a disintegrin and metallopeptidase domain 33 protein-coding 100416687 Gm18194 - - 7|7 A1 zinc finger protein 329 pseudogene pseudo 75961 5033418A18Rik - - X|X RIKEN cDNA 5033418A18 gene protein-coding 225280 Mm.258973 NM_172625 ENSMUSG00000047989 Ino80c D030070L09Rik - 18|18 A2 INO80 complex subunit C protein-coding 100416984 Gm18347 - - 7|7 B3 MAS-related GPR, member A1 pseudogene pseudo 626582 Vmn1r-ps12 EG626582|Gm6688 - 6|6 B3 vomeronasal 1 receptor, pseudogene 12 pseudo 114575 Hdl2 - - 5 50.64 cM high density lipoprotein (HDL) level 2 unknown 111848 Iapls3-38 - - - intracisternal A particle, lymphocyte specific 3-38 other 20271 Mm.103584 NM_021544 ENSMUSG00000032511 Scn5a Nav1.5|Nav1.5c|SkM1|SkM2|mH1 - 9 F3|9 71.33 cM sodium channel, voltage-gated, type V, alpha protein-coding 676253 Gm14648 - - X|X A5 ribosomal protein L21 pseudogene pseudo 241944 Mm.260056 NM_001101478 ENSMUSG00000033883 D3Ertd254e - - 3 B|3 17.41 cM DNA segment, Chr 3, ERATO Doi 254, expressed protein-coding 217366 Mm.347545 NM_153545 ENSMUSG00000025145 Lrrc45 BC023296 - 11|11 E2 leucine rich repeat containing 45 protein-coding 56786 Mm.240668 NM_020050 ENSMUSG00000031021 Tmem9b 2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3 - 7|7 E3 TMEM9 domain family, member B protein-coding 102638325 XR_385417 Gm34916 - - 17 A2|17 predicted gene, 34916 ncRNA 102635487 XR_382896 Gm32813 - - 13 D2.1|13 predicted gene, 32813 ncRNA 387164 NR_029558 ENSMUSG00000065601 Mir146 Mirn146|miR-146a|mmu-mir-146 - 11 B1.1|11 microRNA 146 ncRNA 625963 Mm.251506 NR_040748 ENSMUSG00000105662 Gm6639 - - 3 A3-B|3 predicted gene 6639 ncRNA 102631780 Mm.329684 XR_388287 ENSMUSG00000097233 LOC102631780 - - 19 A uncharacterized LOC102631780 ncRNA 97086 Mm.441764 NM_178877 ENSMUSG00000037994 Slc9b2 C80638|NHA2|NHE10|Nhedc2|nha-oc|nhaoc - 3|3 G3 solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2 protein-coding 100846987 NR_144494 Pou5f1-rs5 Gm21054|Oct4P5|Otf3-rs5|Otf3e - 6 E1|6 POU domain, class 5, transcription factor 1, related sequence 5 pseudo 102639127 LOC102639127 - - 1 D zinc finger protein 330 pseudogene pseudo 53048 CA25.2 - - - DNA segment, CA25.2 unknown 17664 Ms80 MMS80 - - minisatellites detected by probe MMS80 other 102465788 NR_106157 ENSMUSG00000105165 Mir7686 mmu-mir-7686 - 7|7 F4 microRNA 7686 ncRNA 432516 Mm.90450 NM_001081219 ENSMUSG00000025401 Myo1a BBM-I|Myhl - 10 D3|10 74.62 cM myosin IA protein-coding 327860 Mm.186065 NM_177799 ENSMUSG00000056288 Gm11961 - - 11 A1|11 predicted gene 11961 ncRNA 102636035 XR_377681 Gm33219 - - 6 B3|6 predicted gene, 33219 ncRNA 21124 T(2;16)28H T28H - - reciprocal translocation, Chr 2 and 16, Harwell 28 other 61384 D5Mit118 - - 5 62.33 cM DNA segment, Chr 5, Massachusetts Institute of Technology 118 unknown 100042440 Gm20919 - - Y|Y predicted gene, 20919 protein-coding 105243251 XR_879088 Gm39222 - - 8 C5|8 predicted gene, 39222 ncRNA 74244 Mm.275332 NM_028835 ENSMUSG00000030314 Atg7 1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553 - 6|6 E3 autophagy related 7 protein-coding 61726 D5Mit278 - - 5 55.39 cM DNA segment, Chr 5, Massachusetts Institute of Technology 278 unknown 102633955 XR_882146 Gm31652 - - 7 C|7 predicted gene, 31652 ncRNA 100038502 G730007D18Rik - - - RIKEN cDNA G730007D18 gene other 27658 D1Dau5 - - - DNA segment, Chr 1, DA Underhill 5 unknown 73317 Mm.272871 1700031F10Rik - - 6|6 D1 RIKEN cDNA 1700031F10 gene unknown 12447 Mm.16110 NM_007633 ENSMUSG00000002068 Ccne1 AW538188|CycE1 - 7 B3|7 25.35 cM cyclin E1 protein-coding 93886 Mm.283857 NM_053140 ENSMUSG00000047033 Pcdhb15 Pcdhb7|PcdhbO - 18|18 B3 protocadherin beta 15 protein-coding 100312560 Vmn1r-ps132 Gm11328 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 132 pseudo 61904 D2Mit447 - - 2 62.63 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 447 unknown 14685 Mm.284853 NM_008140 ENSMUSG00000034837 Gnat1 Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin - 9 F1|9 58.86 cM guanine nucleotide binding protein, alpha transducing 1 protein-coding 102638127 XR_384307 Gm34764 - - 15 E2|15 predicted gene, 34764 ncRNA 100534291 Gm21015 - - 3|3 B zinc finger protein 882 pseudogene pseudo 434175 XR_882048 ENSMUSG00000048574 Ccnb1-ps EG434175|Gm5593 - 7|7 B3 cyclin B1, pseudogene pseudo 751555 NR_030425 ENSMUSG00000076313 Mir665 Mirn665|mir-665|mmu-mir-665 - 12 F1|12 microRNA 665 ncRNA 100503540 Mm.484525 Gm19760 - - 15|15 16.1 cM predicted gene, 19760 unknown 105243504 Gm39406 - - 9|9 predicted gene, 39406 ncRNA 102639953 XR_377733 Gm36144 - - 6 C1|6 predicted gene, 36144 ncRNA 102637977 Mm.460744 XR_001784270 Gm12404 - - 4 A5|4 21.71 cM predicted gene 12404 ncRNA 22787 Mm.6510 NM_011775 ENSMUSG00000030911 Zp2 Zp-2 - 7 F2|7 64.38 cM zona pellucida glycoprotein 2 protein-coding 258468 Mm.314870 NM_146476 ENSMUSG00000075074 Olfr1254 MOR231-13 - 2|2 E1 olfactory receptor 1254 protein-coding 27699 D1Dau15 - - - DNA segment, Chr 1, DA Underhill 15 unknown 105245521 Gm40967 - - 13|13 predicted gene, 40967 ncRNA 102639227 XM_006528350 Gm35586 - - X A5|X predicted gene, 35586 protein-coding 257778 Olfr436-ps1 EG257778|GA_x5J8B7W6337-1270568-1271367|Gm5005 - 6 B2.1|6 olfactory receptor 436, pseudogene 1 pseudo 360073 D17Jcs82 - - - DNA segment, Chr 17, John C. Schimenti 82 unknown 16509 Mm.299425 NM_008424 ENSMUSG00000039639 Kcne1 Isk|MinK|nmf190 - 16 C4|16 53.57 cM potassium voltage-gated channel, Isk-related subfamily, member 1 protein-coding 105244078 Gm39756 - - 2|2 predicted gene, 39756 ncRNA 61017 D6Mit116 - - 6 11.5 cM DNA segment, Chr 6, Massachusetts Institute of Technology 116 unknown 101694 Mm.41661 NR_040311 ENSMUSG00000097023 Mir9-3hg AI854517 - 7|7 D2 Mir9-3 host gene ncRNA 108167405 XR_001778036 LOC108167405 - - 7 A1 uncharacterized LOC108167405 ncRNA 102635221 Gm32614 - - 1|1 predicted gene, 32614 ncRNA 67857 Mm.389242 NM_024209 ENSMUSG00000026753 Ppp6c 2310003C10Rik|Pp6C - 2|2 B protein phosphatase 6, catalytic subunit protein-coding 61920 D4Mit304 - - 4 45.82 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 304 unknown 71189 4933426I03Rik - - 10|10 RIKEN cDNA 4933426I03 gene protein-coding 408072 D6Wum40 - - - DNA segment, Chr 6, Washington University School of Medicine 40 unknown 330951 Mm.406992 NM_001243265 Gm16130 E330033L03 - 9|9 B predicted gene 16130 protein-coding 320406 Mm.404290 A630009H07Rik - - 8|8 RIKEN cDNA A630009H07 gene unknown 72852 Mm.31095 NM_028372 ENSMUSG00000051098 Mblac2 2900024O10Rik - 13|13 C3 metallo-beta-lactamase domain containing 2 protein-coding 23924 Mm.28127 NM_011835 ENSMUSG00000019794 Katna1 - - 10|10 A1 katanin p60 (ATPase-containing) subunit A1 protein-coding 114664 Mm.46019 NM_053262 ENSMUSG00000029311 Hsd17b11 Dhrs8|Pan1b|SDR2|retSDR2 - 5|5 E5 hydroxysteroid (17-beta) dehydrogenase 11 protein-coding 102633913 XR_872447 Gm31623 - - 12 A1.1|12 predicted gene, 31623 ncRNA 100042614 Trav5n-4 Gm10903 - 14|14 C2 T cell receptor alpha variable 5N-4 other 30838 Mm.254739 NM_013907 ENSMUSG00000040913 Fbxw4 Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn - 19 C3|19 38.75 cM F-box and WD-40 domain protein 4 protein-coding 170664 Lcho4 - - - liver cholesterol 4 unknown 105245039 XR_871039 Gm40550 - - 9 E3.3|9 predicted gene, 40550 ncRNA 100040447 Mm.158983 XR_001779186 1700036A12Rik - - 9|9 B RIKEN cDNA 1700036A12 gene unknown 436539 Trav6-2 Gm5772 - 14|14 C2 T cell receptor alpha variable 6-2 other 102637721 XR_386855 Gm34459 - - 19 D3|19 predicted gene, 34459 ncRNA 100503875 Vmn2r-ps120 EG627476|Gm6761 - 17|17 A3.2 vomeronasal 2, receptor, pseudogene 120 pseudo 100502909 Gm19448 - - 13|13 34.49 cM predicted gene, 19448 pseudo 102631669 XR_381744 Gm29952 - - 12 C3|12 predicted gene, 29952 ncRNA 107759 Tcra-V16.1 - - - T cell receptor, alpha, variable 16.1 other 102466645 NR_105831 ENSMUSG00000098952 Mir6405 Gm27349|mmu-mir-6405 - 19|19 C3 microRNA 6405 ncRNA 67900 Mm.41719 NM_026443 ENSMUSG00000004748 Mtfp1 1700020C11Rik|2610507A21Rik|AV005788|Mtp18 - 11|11 A1 mitochondrial fission process 1 protein-coding 73822 Mm.182281 NM_028657 ENSMUSG00000034854 Mfsd12 C19orf28|F630110N24Rik|Wdt1|gr - 10|10 C1 major facilitator superfamily domain containing 12 protein-coding 492867 Bmd19 - - - bone mineral density 19 unknown 71769 Mm.45256 NM_027914 ENSMUSG00000035759 Bbs10 1300007O09Rik|AI452285 - 10|10 D1 Bardet-Biedl syndrome 10 (human) protein-coding 20249 Mm.267377 NM_009127 ENSMUSG00000037071 Scd1 AA589638|AI265570|Scd|Scd-1|ab - 19 C3|19 37.98 cM stearoyl-Coenzyme A desaturase 1 protein-coding 76755 2310045N14Rik - - 13|13 RIKEN cDNA 2310045N14 gene protein-coding 75076 NR_130983 ENSMUSG00000116167 4930504C09Rik - - 15|15 D3 RIKEN cDNA 4930504C09 gene ncRNA 110204 Gma3 Gm-3|Gm3 - - granulocyte macrophage antigen 3 protein-coding 105245617 XR_873891 Gm41047 - - 13 D1|13 predicted gene, 41047 ncRNA 67260 Mm.35511 NM_026058 ENSMUSG00000008206 Cers4 2900019C14Rik|Lass4|Trh1 - 8|8 A1.1 ceramide synthase 4 protein-coding 107598 Nhcp7 Nhcp-7 - - nonhistone chromosomal protein 7 protein-coding 628301 Gm11383 - - 13|13 A3.3 prohibitin pseudogene pseudo 100035713 Mofp6 Mof6 - - mesenteric and omental fat pad weight 6 unknown 19441 Rb(1.18)10Rma Rb10Rma - - Robertsonian translocation, Chr 1 and 18, Universita di Roma 10 other 108167888 NR_151470 2610024D14Rik - - 11|11 A3.1 ATP synthase subunit g, mitochondrial pseudogene pseudo 73388 Mm.71904 NM_028528 ENSMUSG00000027482 Bpifa3 1700058C13Rik|Splunc3 - 2|2 H1 BPI fold containing family A, member 3 protein-coding 100303644 Mm.330469 NR_028422 ENSMUSG00000092397 C130080G10Rik - - 2|2 E4 RIKEN cDNA C130080G10 gene ncRNA 621149 Gm6203 EG621149 - 8|8 A4 tubulin, alpha 1C pseudogene pseudo 100093629 Gm10861 - - - predicted gene 10861 unknown 387188 NR_029579 ENSMUSG00000065395 Mir193a Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a - 11 B5|11 microRNA 193a ncRNA 100124490 Mir712 Mirn712|mmu-mir-712 - - microRNA 712 ncRNA 76407 Mm.33629 NM_029599 ENSMUSG00000027480 Sun5 1700021O15Rik|SPAG4L-2|SRG4|Spag4l - 2|2 H1 Sad1 and UNC84 domain containing 5 protein-coding 105245558 XR_873671 Gm41002 - - 13 C1|13 predicted gene, 41002 ncRNA 83993 Mm.190649 NM_032005 ENSMUSG00000026572 Tbx19 AU019250|D1Ertd754e|Tpit - 1 H2.2|1 72.47 cM T-box 19 protein-coding 384401 Gm5308 EG384401 - 6|6 C1 tubulin, alpha 1A pseudogene pseudo 319481 Mm.247294 NM_176923 ENSMUSG00000031959 Wdr59 5430401O09Rik|Cdw12 - 8|8 E1 WD repeat domain 59 protein-coding 11298 Mm.42233 NM_009591 ENSMUSG00000020804 Aanat AA-NAT|Nat-2|Nat4|Snat - 11 81.43 cM|11 E2 arylalkylamine N-acetyltransferase protein-coding 76734 Mm.360976 6330437I11Rik - - 13|13 RIKEN cDNA 6330437I11 gene unknown 105244968 XR_870312 Gm40486 - - 8 A4|8 predicted gene, 40486 ncRNA 18035 Mm.170515 NM_010907 ENSMUSG00000021025 Nfkbia AI462015|Nfkbi - 12|12 C1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha protein-coding 259031 Mm.223414 NM_147029 ENSMUSG00000081234 Olfr1120 MOR264-2 - 2|2 D olfactory receptor 1120 protein-coding 16591 Mm.6500 NM_013823 ENSMUSG00000058488 Kl alpha-kl - 5|5 G3 klotho protein-coding 327762 Mm.21492 NM_177372 ENSMUSG00000036875 Dna2 Dna2l|E130315B21Rik - 10|10 B4 DNA replication helicase/nuclease 2 protein-coding 102633334 XR_375879 Gm31183 - - 3 F2.1|3 predicted gene, 31183 ncRNA 100036346 Eae40 Eae36 - - experimental allergic encephalomyelitis susceptibility 40 unknown 100038516 Mm.387223 NR_046062 ENSMUSG00000100985 Gm10640 EG668322 - 7 B1|7 predicted gene 10640 ncRNA 347711 Mm.21815 NM_178249 ENSMUSG00000025838 Pramel6 C80453|C80515 - 2|2 D preferentially expressed antigen in melanoma like 6 protein-coding 75755 9030420N05Rik BB166928 - - RIKEN cDNA 9030420N05 gene protein-coding 110120565 LOC110120565 - - - VISTA enhancer mm1581 biological-region 77127 Mm.195792 NR_040549 ENSMUSG00000098008 A930001A20Rik - - 3|3 A1 RIKEN cDNA A930001A20 gene ncRNA 546065 Sp100-rs - - 1|1 uncharacterized LOC546065 protein-coding 385356 Gm5388 EG385356 - X|X A5 actin, gamma, cytoplasmic 1 pseudogene pseudo 74201 Mm.178427 NM_028815 ENSMUSG00000022604 Cep97 2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2 - 16|16 C1.1 centrosomal protein 97 protein-coding 105244191 XR_866406 Gm39843 - - 2 C2|2 predicted gene, 39843 ncRNA 21020 T(1;7)27Ad T27Ad - - reciprocal translocation, Chr 1 and 7, Adler 27 other 107928 Hykk2 - - - histocompatibility Y antigen K-restricted 2 protein-coding 69836 Mm.30268 NM_023530 ENSMUSG00000009646 Pla2g12b 2010002E04Rik|Fksg71|Pla2g13|hlb218 - 10|10 B4 phospholipase A2, group XIIB protein-coding 102635219 XR_376987 4930480C01Rik Gm43770 - 5|5 C3.1 RIKEN cDNA 4930480C01 gene ncRNA 68585 Mm.192580 NM_024226 ENSMUSG00000020458 Rtn4 1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153 - 11|11 A3.3 reticulon 4 protein-coding 72119 Mm.407737 NM_028109 ENSMUSG00000027469 Tpx2 2610005B21Rik|DIL2|REPP86|p100 - 2|2 H1 TPX2, microtubule-associated protein-coding 22646 Mm.290595 NM_009544 ENSMUSG00000057895 Zfp105 AW557864 - 9 F4|9 73.23 cM zinc finger protein 105 protein-coding 109472 Lore7 - - - loss of righting induced by ethanol 7 unknown 105245277 XR_872012 Gm40754 - - 10 D1|10 predicted gene, 40754 ncRNA 102637812 XR_001781233 Gm17027 - - 14 B|14 22.4 cM predicted gene 17027 ncRNA 667284 Gm8556 EG667284 - 7|7 E3 predicted gene 8556 pseudo 118449 Mm.34359 NM_080451 ENSMUSG00000050315 Synpo2 1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo - 3|3 G1 synaptopodin 2 protein-coding 102635331 Gm32699 - - 13|13 predicted gene, 32699 protein-coding 100039386 Gm2200 - - X A3.1|X predicted gene 2200 ncRNA 269608 Mm.332102 NM_001004156 ENSMUSG00000039713 Plekhg5 BC023181|Syx - 4|4 E2 pleckstrin homology domain containing, family G (with RhoGef domain) member 5 protein-coding 638566 Trav13-2 Gm13918 - 14 C2|14 T cell receptor alpha variable 13-2 other 100861615 Mm.488431 NM_001270812 ENSMUSG00000079396 LOC100861615 - - 14 A1 alpha takusan-like protein-coding 380739 Gm5139 - - 3 E1|3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102639071 Gm35473 - - 1|1 predicted gene, 35473 ncRNA 22137 Mm.1904 NM_009445 ENSMUSG00000038379 Ttk AL022661|Esk1|Mps1|PYT|esk - 9|9 E2 Ttk protein kinase protein-coding 77223 Mm.401926 NR_131071 ENSMUSG00000086713 4930407G08Rik - - 4|4 C7 RIKEN cDNA 4930407G08 gene ncRNA 100036222 Splrn1 - - - spatial learning 1 unknown 242914 Mm.400417 NR_045694 ENSMUSG00000104667 Gm4961 EG242914|Gm19623|Kif2c - 5 B1|5 kinesin superfamily protein 2C pseudogene pseudo 269637 Mm.68286 NM_175651 ENSMUSG00000044681 Cnpy1 1500012D20Rik|9630008K15Rik|AI853839 - 5|5 B1 canopy FGF signaling regulator 1 protein-coding 381580 Mm.51001 NM_001033455 ENSMUSG00000039492 Ccdc27 Gm1035 - 4|4 E2 coiled-coil domain containing 27 protein-coding 16854 Mm.248615 NM_010705 ENSMUSG00000050335 Lgals3 GBP|L-34|Mac-2|gal3 - 14|14 C1 lectin, galactose binding, soluble 3 protein-coding 102124 Mm.276087 NM_198299 ENSMUSG00000013155 Enkd1 AI606951|E130303B06Rik - 8|8 D3 enkurin domain containing 1 protein-coding 108807 Mm.352037 4933415E08Rik - - 12|12 RIKEN cDNA 4933415E08 gene protein-coding 74910 Mm.159364 NM_001177966 ENSMUSG00000035651 4930480E11Rik - - X|X B RIKEN cDNA 4930480E11 gene protein-coding 61589 D9Mit289 - - 9 38.58 cM DNA segment, Chr 9, Massachusetts Institute of Technology 289 unknown 12521 Mm.4261 NM_007656 ENSMUSG00000027215 Cd82 AA682076|AL023070|C33|IA4|Kai1|Tspan27 - 2 E1|2 51.62 cM CD82 antigen protein-coding 279067 Gm13777 - - 2|2 E1 predicted gene 13777 protein-coding 114756 Sle13 - - 11 52.22 cM systematic lupus erythematosus susceptibility 13 unknown 100417578 Gm15001 - - X|X F1 zinc finger CCCH type containing 14 pseudogene pseudo 320040 Mm.305696 NM_177060 ENSMUSG00000046490 Rnf222 9930039A11Rik - 11|11 B3 ring finger protein 222 protein-coding 27828 335F15R - - - DNA segment, 335F15R (Research Genetics) unknown 212516 Mm.333333 NM_198603 ENSMUSG00000030321 Efcab12 BB124106 - 6|6 E3 EF-hand calcium binding domain 12 protein-coding 622204 Gm6296 EG622204 - 13|13 C1 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 112163585 AA624366 - - - expressed sequence AA624366 protein-coding 100093663 Trnaa-ggc - - - transfer RNA alanine (anticodon GGC) tRNA 100048312 Gm17788 - - 7 E3|7 tripartite motif-containing protein 30-like pseudo 258658 Mm.377621 NM_146664 ENSMUSG00000045306 Olfr734 MOR242-1 - 14|14 C1 olfactory receptor 734 protein-coding 71246 Mm.23173 4933437I04Rik - - 2|2 H3 RIKEN cDNA 4933437I04 gene protein-coding 17300 Mm.12949 NM_008592 ENSMUSG00000050295 Foxc1 FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda - 13 A3.2|13 13.52 cM forkhead box C1 protein-coding 100038738 LOC100038738 - - 9 F3|9 uncharacterized LOC100038738 unknown 77846 Mm.404871 NR_110475 ENSMUSG00000086715 B230112J18Rik - - 5|5 F RIKEN cDNA B230112J18 gene ncRNA 320541 Mm.306018 NM_177186 ENSMUSG00000042202 Slc35e2 A530082C11Rik|AI957035 - 4|4 E2 solute carrier family 35, member E2 protein-coding 21814 Mm.200775 NM_011578 ENSMUSG00000029287 Tgfbr3 1110036H20Rik|AU015626|AW215636|TBRIII - 5|5 E5 transforming growth factor, beta receptor III protein-coding 105245393 XR_872550 Gm40857 - - 12 A1.3|12 predicted gene, 40857 ncRNA 629557 Mm.422775 NR_023357 Gm6981 EG629557 - 9|9 A5.3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 626888 Rpl36-ps4 EG626888|Gm6716 - 17|17 E4 ribosomal protein L36, pseudogene 4 pseudo 53082 B3K(I) - - - DNA segment, B3K(I) unknown 66283 Mm.46414 NM_025466 ENSMUSG00000030050 Gkn1 2200002K21Rik|AMP-18|BRICD1|Fov - 6|6 D1 gastrokine 1 protein-coding 102634652 XR_873931 Gm32186 - - 13 D2.1|13 predicted gene, 32186 ncRNA 242274 Mm.132162 NM_001081358 ENSMUSG00000028176 Lrrc7 AK122498|densin|mKIAA1365 - 3|3 H4 leucine rich repeat containing 7 protein-coding 664619 Mm.250005 NR_033607 4921533I20Rik - - 18|18 A1 PRP18 pre-mRNA processing factor 18 homolog pseudogene pseudo 110571 Tcra-V19.2 - - - T cell receptor alpha, variable 19.2 other 15152 Hc3 Cen3 - - heterochromatin, Chr 3 other 62267 D19Mit16 - - 19 13.82 cM DNA segment, Chr 19, Massachusetts Institute of Technology 16 unknown 100416217 Gm17974 - - 1|1 G3 predicted gene, 17974 pseudo 69889 Mm.417837 2010103J01Rik - - 1|1 RIKEN cDNA 2010103J01 gene protein-coding 226901 Gm4849 EG226901 - 1|1 A3 isoleucine-tRNA synthetase pseudogene pseudo 52653 Mm.276504 NM_026023 ENSMUSG00000020328 Nudcd2 - - 11 A5|11 24.41 cM NudC domain containing 2 protein-coding 78212 Mm.399202 NR_040381 ENSMUSG00000086273 Rbm46os 4930444E23Rik|4930564K09Rik|Lratos - 3|3 E3 RNA binding motif protein 46, opposite strand ncRNA 22651 Mm.442631 Zfp125 ZT2 - 12|12 8.28 cM zinc finger protein 125 protein-coding 105243973 XR_872337 Gm39673 - - 11 A4|11 predicted gene, 39673 ncRNA 100418289 Gm19120 - - 14|14 D3 Mki67 (FHA domain) interacting nucleolar phosphoprotein pseudogene pseudo 100041003 Gm3089 - - 5 E3|5 predicted gene 3089 pseudo 111613 Xmv42 Xmv-42 - - xenotropic murine leukemia virus 42 other 109476 Hcbip2 - - - hexachlorobenzene induced porphyria 2 unknown 105243261 XR_879120 Gm39230 - - 8 D1|8 predicted gene, 39230 ncRNA 117209 l9Rl8 nl-2 - - lethal, Chr 9, Russell 8 protein-coding 112006 Batq2 - - - brown fat QTL 2 unknown 94190 Mm.33536 NM_052976 ENSMUSG00000031214 Ophn1 C130037N19Rik|Wtgr - X|X C3 oligophrenin 1 protein-coding 330664 Mm.127762 NR_040459 ENSMUSG00000109633 C230079O03Rik C230079O03 - 7|7 F3 RIKEN cDNA C230079O03 gene ncRNA 116746 Mm.358822 NM_054074 ENSMUSG00000050756 Defb6 BD-6 - 8|8 A1.3 defensin beta 6 protein-coding 109577 Ssq - - - sasquatch unknown 71276 Mm.275751 NM_027745 ENSMUSG00000048445 Ccdc57 4933434G05Rik - 11|11 E2 coiled-coil domain containing 57 protein-coding 100540 AA589385 - - - expressed sequence AA589385 unknown 70829 Mm.25788 NM_027567 ENSMUSG00000026339 Ccdc93 4633402D15Rik|9230102M16Rik - 1|1 E2.3 coiled-coil domain containing 93 protein-coding 100042313 Gm3786 - - 5|5 F predicted gene 3786 pseudo 102634586 XR_373881 Gm32128 - - 1 H6|1 predicted gene, 32128 ncRNA 100316710 NR_035489 ENSMUSG00000089219 Mir1963 mir-1963|mmu-mir-1963 - 7 B1|7 16.94 cM microRNA 1963 ncRNA 231887 Mm.188851 NM_001033313 ENSMUSG00000029623 Pdap1 HASPP28|PAP|PAP1 - 5|5 G2 PDGFA associated protein 1 protein-coding 100041907 Gm3571 - - 10 C2|10 farnesyl diphosphate synthetase pseudogene pseudo 387148 Mir129 Mirn129 - - microRNA 129 ncRNA 108168759 LOC108168759 - - 2 C1.1 60S ribosomal protein L29 pseudogene pseudo 100040852 Mm.483675 NR_033388 Gm3002 - - 14 A1|14 alpha-takusan pseudogene pseudo 51922 D2Ertd612e - - 2 30.69 cM DNA segment, Chr 2, ERATO Doi 612, expressed unknown 654802 Mm.414924 NR_045703 1700105P06Rik - - 19|19 A RIKEN cDNA 1700105P06 gene ncRNA 77347 B230204H03Rik - - 5|5 RIKEN cDNA B230204H03 gene protein-coding 110120502 LOC110120502 - - - VISTA enhancer mm1473 biological-region 105246633 Gm41895 - - X|X predicted gene, 41895 protein-coding 105245751 Gm41150 - - 14|14 predicted gene, 41150 ncRNA 381258 Gm5147 EG381258 - 1|1 C1.2 ribosomal protein L7A pseudogene pseudo 100035643 Tmc1m4 - - - Tmc1 modifier 4 unknown 102639937 Gm15205 - - X|X 74.16 cM predicted gene 15205 ncRNA 60693 D2Mit8 - - 2 30.84 cM DNA segment, Chr 2, Massachusetts Institute of Technology 8 unknown 108281108 LOC108281108 - - - Pax8 CNS1 enhancer biological-region 626299 Mm.436604 NM_001080972 ENSMUSG00000069297 Vmn1r194 Gm11294 - 13 A3.1|13 vomeronasal 1 receptor 194 protein-coding 625253 Mm.463485 NR_040420 Gm6568 EG625253 - X|X F4 DnaJ (Hsp40) homolog, subfamily B, member 9 pseudogene pseudo 78438 Mm.447298 XR_386702 A930028N01Rik - - 19|19 C3 RIKEN cDNA A930028N01 gene ncRNA 27669 D11Moh22 - - - DNA segment, Chr 11, KL Mohlke 22 unknown 226255 Mm.245340 NM_181415 ENSMUSG00000054843 Atrnl1 AI504415|AW555641|Alp|Atrnl|Atrnlp - 19|19 D2 attractin like 1 protein-coding 258388 Mm.357709 NM_146393 ENSMUSG00000109813 Olfr1279 MOR245-12 - 2|2 E3 olfactory receptor 1279 protein-coding 16163 Mm.1284 NM_008355 ENSMUSG00000020383 Il13 Il-13 - 11 B1.3|11 31.98 cM interleukin 13 protein-coding 112028 Bw13 - - - body weight QTL 13 unknown 77640 C030039E19Rik - - 13|13 A3.1 RIKEN cDNA C030039E19 gene protein-coding 102637996 Gm21733 - - Y|Y predicted gene, 21733 protein-coding 21107 T(17;18)4Gso T4Gso - - reciprocal translocation, Chr 17 and 18, Generoso 4 other 100038394 Mm.401677 NR_033458 Gm10512 - - 17 A1|17 predicted gene 10512 ncRNA 97789 C77494 - - - expressed sequence C77494 protein-coding 232440 Mm.154564 NM_177688 ENSMUSG00000060032 H2afj E130307C13 - 6|6 G1 H2A histone family, member J protein-coding 105243997 XR_865701 Gm39692 - - 1 H2.2|1 predicted gene, 39692 ncRNA 105245345 Gm40817 - - 11|11 predicted gene, 40817 ncRNA 102634351 XR_875097 Gm31953 - - 15 B2|15 predicted gene, 31953 ncRNA 628900 Mm.436602 NM_001199940 ENSMUSG00000079014 Serpina3i 2B2|EG628900|Gm6930 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 3I protein-coding 27833 D6Kcc1 - - - DNA segment, Chr 6, Kimmel Cancer Center 1 unknown 102636945 XR_388124 Gm26747 - - 8 E1|8 predicted gene, 26747 ncRNA 667414 Gm8618 EG667414 - 1|1 E4 predicted gene 8618 pseudo 244238 Mm.183561 NM_175534 ENSMUSG00000048965 Mrgpre C130069N09Rik|Ebrt3|Mgrf|MrgE - 7|7 F5 MAS-related GPR, member E protein-coding 258581 Mm.223108 NM_146588 ENSMUSG00000044923 Olfr1030 MOR196-2 - 2|2 D olfactory receptor 1030 protein-coding 102634823 XR_390548 Gm32317 - - 4 B1|4 predicted gene, 32317 ncRNA 12493 Mm.3689 NM_007645 ENSMUSG00000030798 Cd37 Tspan26 - 7 B3|7 29.2 cM CD37 antigen protein-coding 69136 Mm.171558 NM_026954 ENSMUSG00000054000 Tusc1 2200001D17Rik|TSG-9 - 4|4 C5 tumor suppressor candidate 1 protein-coding 111827 Iapls1-47 - - - intracisternal A particle, lymphocyte specific 1-47 other 12578 Mm.4733 NM_009877 ENSMUSG00000044303 Cdkn2a ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19|p19ARF - 4 C4|4 42.15 cM cyclin dependent kinase inhibitor 2A protein-coding 105246421 Gm41711 - - 18|18 predicted gene, 41711 ncRNA 108609 Iap3rc21 - - - intracisternal A-type particle, U3 region, SINE repeat c-21 other 100036201 Sluc27 - - 16 45.36 cM susceptibility to lung cancer 27 unknown 62485 D10Mit114 - - 10 36.32 cM DNA segment, Chr 10, Massachusetts Institute of Technology 114 unknown 665284 Gm7569 EG665284 - 18|18 E3 ferritin light chain 1 pseudogene pseudo 100503378 Mm.387133 NR_152226 ENSMUSG00000085826 Gm15638 Gm41457 - 16 B5|16 30.45 cM predicted gene 15638 ncRNA 493123 Char6 - - - P. chabaudi malaria resistance QTL 6 unknown 112049 Kwq7 - - - kidney weight QTL 7 unknown 74227 Mm.334856 NR_151732 ENSMUSG00000102737 1700016A09Rik - - 8|8 E1 RIKEN cDNA 1700016A09 gene ncRNA 85185 D17Mit79 - - - DNA segment, Chr 17, Massachusetts Institute of Technology 79 unknown 100046290 Gm13370 - - 2|2 A3 ribosomal protein L21 pseudogene pseudo 100042767 Gm16415 EG635258 - 18|18 B3 ribosomal protein L21 pseudogene pseudo 112223 Skts11 - - 6 37.96 cM skin tumor susceptibility 11 unknown 246169 L1Md-Gf253 GF253 - - L1 repeat, Gf subfamily, member253 other 102635607 XR_380689 Gm32898 - - 10 C2|10 predicted gene, 32898 ncRNA 102636097 Gm33264 - - X|X predicted gene, 33264 ncRNA 214469 Mm.120151 NM_174997 ENSMUSG00000037503 Fam168b Mani|mKIAA4042 - 1|1 B family with sequence similarity 168, member B protein-coding 102632661 XR_877344 Gm38447 - - 18 B3|18 predicted gene, 38447 ncRNA 108487 Ms74 MMS74 - - minisatellites detected by probe MMS74 other 73533 XM_017321874 1700080G18Rik - - 6|6 A3.3 RIKEN cDNA 1700080G18 gene protein-coding 666665 Gm8222 EG666665 - 19|19 A nuclear import 7 pseudogene pseudo 105245478 Mm.444827 XR_873303 Gm15813 - - 13 A4|13 21.31 cM predicted gene 15813 ncRNA 102635369 Gm32726 - - 13|13 predicted gene, 32726 ncRNA 100504659 Gm16210 - - 10|10 21.07 cM 60S ribosomal protein L15-like pseudo 69038 Mm.375100 NM_026919 ENSMUSG00000036372 Tmem258 1810006K21Rik - 19|19 A transmembrane protein 258 protein-coding 20600 Mm.1397 NM_021289 ENSMUSG00000029281 Smr2 MSG2|Vcs2 - 5|5 E1 submaxillary gland androgen regulated protein 2 protein-coding 102636165 XR_381433 ENSMUSG00000112578 Gm33308 - - 12 A3|12 predicted gene, 33308 ncRNA 666210 Rpl19-ps8 EG666210|Gm7983 - 6 B2.3|6 ribosomal protein L19, pseudogene 8 pseudo 69299 Mm.79031 NM_027027 ENSMUSG00000031384 Asb9 1700011M07Rik - X|X F5 ankyrin repeat and SOCS box-containing 9 protein-coding 102638982 Gm12639 - - 4|4 43.22 cM UPF0711 protein C18orf21 homolog pseudo 100504566 Mm.450769 Gm20290 - - 14 D3|14 38.89 cM predicted gene, 20290 unknown 102632411 Mm.446740 XR_382194 Gm30489 - - 13 A3.3|13 predicted gene, 30489 ncRNA 51983 D1Ggc2e - - - DNA segment, Chr 1, G. Consalez 2, expressed unknown 100042272 Gm3760 - - 14 A1|14 predicted gene 3760 pseudo 100418263 Gm19107 - - X|X F4 Mki67 (FHA domain) interacting nucleolar phosphoprotein pseudogene pseudo 544710 Mm.441890 NM_001024709 ENSMUSG00000112223 Krtap10-10 EG544710 - 10 C1|10 keratin associated protein 10-10 protein-coding 102638181 Gm11447 - - 2|2 80.98 cM predicted gene 11447 pseudo 110345 Tpm3-rs4 - - - tropomyosin 3, related sequence 4 protein-coding 103268 Mm.338605 NM_026643 ENSMUSG00000019813 Cep57l1 2410017P07Rik|4930484D11Rik|AI607327|cep57R - 10|10 B2 centrosomal protein 57-like 1 protein-coding 93924 D16Jhu63 391L5.T7 - - DNA segment, Chr 16, Johns Hopkins University 63 unknown 62565 D12Mit132 - - 12 57.68 cM DNA segment, Chr 12, Massachusetts Institute of Technology 132 unknown 223513 Mm.148913 NM_175456 ENSMUSG00000042895 Abra C130068O12Rik|STARS - 15|15 B3.1 actin-binding Rho activating protein protein-coding 408196 Mm.432544 NM_001082542 ENSMUSG00000094733 Gm5416 EG408196|Stfna1l1 - 16|16 B3 predicted gene 5416 protein-coding 100416095 Gm15808 - - 16|16 A1 Y box protein 1 pseudogene pseudo 100885828 NR_049189 ENSMUSG00000093403 Mir5616 Gm25191|mir-5616|mmu-mir-5616 - 4|4 E2 microRNA 5616 ncRNA 100418290 Gm19121 - - 9|9 A5.2 phosphatidylinositol glycan anchor biosynthesis, class A pseudogene pseudo 67059 Mm.22661 NM_025942 ENSMUSG00000027108 Ola1 2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004 - 2|2 C3 Obg-like ATPase 1 protein-coding 634222 Gm5353 EG384847 - 8|8 C1 ribosomal protein L7A pseudogene pseudo 100040328 Mm.56398 NR_151771 Gm2716 4933416k23 - 8 C3|8 predicted gene 2716 ncRNA 68178 Mm.99961 NM_026599 ENSMUSG00000032232 Cgnl1 4933421H10Rik|9930020M10Rik|AI503810|Jacop - 9|9 D cingulin-like 1 protein-coding 76952 Mm.40965 NM_029810 ENSMUSG00000025041 Nt5c2 2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II - 19|19 C3 5'-nucleotidase, cytosolic II protein-coding 243078 Mm.126783 NM_153801 ENSMUSG00000049537 Tecrl D330017N19Rik|Srd5a2l2 - 5|5 E1 trans-2,3-enoyl-CoA reductase-like protein-coding 72357 Mm.292672 NM_028211 ENSMUSG00000029559 2210016L21Rik - - 5|5 F RIKEN cDNA 2210016L21 gene protein-coding 258396 Mm.377480 NM_146401 ENSMUSG00000074955 Olfr1305 MOR245-8 - 2|2 E3 olfactory receptor 1305 protein-coding 215866 Gm29673 - - 10|10 predicted gene, 29673 protein-coding 77708 Mm.442158 9130223C08Rik - - 4|4 RIKEN cDNA 9130223C08 gene protein-coding 66053 Mm.253614 NM_144954 ENSMUSG00000022771 Ppil2 0610009L05Rik|1700016N17Rik|4921520K19Rik|4930511F14Rik|AA589416|C130078A06Rik|CYC4 - 16|16 A3 peptidylprolyl isomerase (cyclophilin)-like 2 protein-coding 102633011 XR_390833 Gm30941 - - 4 D3|4 predicted gene, 30941 ncRNA 72168 Mm.40038 NM_175178 ENSMUSG00000022763 Aifm3 2810401C16Rik|AI840249|Aifl - 16|16 A3 apoptosis-inducing factor, mitochondrion-associated 3 protein-coding 105247058 XR_880890 Gm42233 - - 5 A3|5 predicted gene, 42233 ncRNA 19801 Rn4.5s-ps2 - - 9|9 F2 4.5s RNA, pseudogene 2 pseudo 100036129 Mlrrq - - - malaria resistance QTL unknown 208188 Mm.194721 NM_177330 ENSMUSG00000051136 Ghsr C530020I22Rik|GHRP|GHS-R|Ghsr1a - 3|3 A3 growth hormone secretagogue receptor protein-coding 110120403 LOC110120403 - - - VISTA enhancer mm491 biological-region 100417049 Gm18385 - - 2|2 H1 mediator of cell motility 1 pseudogene pseudo 258549 Mm.463730 NM_146556 ENSMUSG00000095002 Olfr798 MOR108-1 - 10|10 D3 olfactory receptor 798 protein-coding 110120471 LOC110120471 - - - VISTA enhancer mm1576 biological-region 73441 Mm.399166 1700057D03Rik - - 2|2 RIKEN cDNA 1700057D03 gene protein-coding 12747 Mm.1761 NM_009905 ENSMUSG00000026034 Clk1 STY - 1 C1.3|1 29.09 cM CDC-like kinase 1 protein-coding 213208 Mm.242896 NM_001033543 ENSMUSG00000044244 Il20rb AV228068|Fndc6|Gm186|Il20R2 - 9|9 E3.3 interleukin 20 receptor beta protein-coding 93935 D16Jhu75 454K24.SP6 - - DNA segment, Chr 16, Johns Hopkins University 75 unknown 73835 Mm.389989 NM_053088 ENSMUSG00000025489 Ifitm5 1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1 - 7|7 F5 interferon induced transmembrane protein 5 protein-coding 102638473 Gm35027 - - 10|10 predicted gene, 35027 ncRNA 54646 Mm.148163 NM_138605 ENSMUSG00000039556 Ppp1r3f DXImx48e|R3F|RF3|Sfc15 - X A1.1|X 3.4 cM protein phosphatase 1, regulatory (inhibitor) subunit 3F protein-coding 108168300 Gm46561 - - 16 A1|16 40S ribosomal protein SA pseudogene pseudo 102640279 XR_001783221 Gm36389 - - 2 A1|2 predicted gene, 36389 ncRNA 13066 Cycs-ps3 - - 13|13 C3 cytochrome c, pseudogene 3 pseudo 94252 AI256733 - - - EST AI256733 unknown 27516 B479N4S - - - DNA segment, B479N4S unknown 192136 Mm.364180 NM_138654 ENSMUSG00000055137 Sugct 5033411D12Rik|D17907 - 13|13 A2 succinyl-CoA glutarate-CoA transferase protein-coding 12183 Mm.282863 NM_007563 ENSMUSG00000038871 Bpgm AI323730|AL022789|C86192 - 6|6 B1 2,3-bisphosphoglycerate mutase protein-coding 100048916 Mm.46662 4930474H06Rik - - 12 C3|12 RIKEN cDNA 4930474H06 gene unknown 27452 53S - - - DNA segment, 53S unknown 235050 Mm.306038 NM_145612 ENSMUSG00000066829 Zfp810 BC005471 - 9|9 A3 zinc finger protein 810 protein-coding 14020 Mm.35796 NM_007964 ENSMUSG00000011831 Evi5 NB4S - 5 F|5 52.23 cM ecotropic viral integration site 5 protein-coding 328516 Mm.454513 NM_183211 Gm20555 D430034N21 - 15|15 B1 predicted gene, 20555 unknown 102634316 Gm31926 - - 1|1 predicted gene, 31926 ncRNA 100043624 Gm4556 - - 10 D3|10 predicted gene 4556 pseudo 62515 D11Mit122 - - 11 58.33 cM DNA segment, Chr 11, Massachusetts Institute of Technology 122 unknown 61547 D9Mit141 - - 9 31.63 cM DNA segment, Chr 9, Massachusetts Institute of Technology 141 unknown 100417836 Gm18857 - - 13|13 A1 aldo-keto reductase family 1, member C13 pseudogene pseudo 22387 wd - - - waddler unknown 102636423 Gm21875 - - Y|Y predicted gene, 21875 protein-coding 102635496 NM_001310455 ENSMUSG00000075520 Malrd1 Diet1|Gm13318|Gm13364 - 2 5.8 cM|2 A2 MAM and LDL receptor class A domain containing 1 protein-coding 57754 Mm.87027 NM_021316 ENSMUSG00000060240 Cend1 1500001H12Rik|AI415214|BM88 - 7|7 F5 cell cycle exit and neuronal differentiation 1 protein-coding 105244945 XR_870184 Gm40467 - - 8 A2|8 predicted gene, 40467 ncRNA 100462956 Gm19252 - - 6 A1|6 6.05 cM mitochondrial ribosomal protein S36 pseudogene pseudo 66279 Mm.41451 NM_025464 ENSMUSG00000032121 Tmem218 1810021J13Rik|AV004931 - 9|9 A4 transmembrane protein 218 protein-coding 60825 D4Mit70 - - 4 67.01 cM DNA segment, Chr 4, Massachusetts Institute of Technology 70 unknown 102638547 Gm12614 - - 11 B2|11 37.81 cM predicted gene 12614 pseudo 102637983 XR_386901 Gm34661 - - X A1.1|X predicted gene, 34661 ncRNA 105244589 XR_867759 Gm40180 - - 3 H3|3 predicted gene, 40180 ncRNA 111950 Iap3ra14 - - - intracisternal A-type particle, U3 region, SINE repeat a-14 other 105246026 XR_001781598 Gm41388 - - 15 E3|15 predicted gene, 41388 ncRNA 629573 Gm6983 EG629573 - 10|10 B2 ribosomal protein S8 pseudogene pseudo 105244152 Gm39814 - - 11|11 predicted gene, 39814 ncRNA 102635344 XR_378506 Gm32707 - - 7 F3|7 predicted gene, 32707 ncRNA 114149 Szs10 - - - seizure susceptibility 10 unknown 105245361 Gm40829 - - 13|13 predicted gene, 40829 ncRNA 52323 Mm.273768 NM_026448 ENSMUSG00000028986 Klhl7 2700038B03Rik|D5Ertd363e|SBBI26 - 5 A3|5 10.67 cM kelch-like 7 protein-coding 116929 Stia1 - - 1 68.38 cM serum transfer induced arthritis 1 unknown 192166 Mm.278467 NM_138665 ENSMUSG00000009614 Sardh - - 2|2 A3 sarcosine dehydrogenase protein-coding 105242533 Mm.320317 LOC105242533 - - - uncharacterized LOC105242533 ncRNA 19478 Rb(11.16)2H Rb2H - - Robertsonian translocation, Chr 11 and 16, Harwell 2 other 97805 C79259 - - - expressed sequence C79259 unknown 61475 D7Mit133 - - 7 64.77 cM DNA segment, Chr 7, Massachusetts Institute of Technology 133 unknown 85049 DXMit1.1 DXMit1 - X 37.29 cM DNA segment, Chr X, Massachusetts Institute of Technology 1.1 unknown 435350 Mm.263418 NM_001045535 ENSMUSG00000069248 Serpinb6e Gm11396|SPI3B|ovalbumin - 13 A3.3|13 13.98 cM serine (or cysteine) peptidase inhibitor, clade B, member 6e protein-coding 667985 Gm11185 - - 4|4 C3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102632930 XR_378932 Gm30880 - - 8 B1.1|8 predicted gene, 30880 ncRNA 360060 D17Jcs35 - - - DNA segment, Chr 17, John C. Schimenti 35 unknown 70057 Mm.443420 XR_388863 2210008F06Rik - - 11|11 B5 RIKEN cDNA 2210008F06 gene unknown 76713 Mm.425445 NM_001033176 ENSMUSG00000070568 Slc6a21 1700039E15Rik|Gm19188 - 7|7 B3 solute carrier family 6 member 21 protein-coding 100039262 Gm2123 - - 13|13 A1 solute carrier family 23 (nucleobase transporters), member 2 pseudogene pseudo 102634195 XR_387670 Gm31836 - - 5 F|5 predicted gene, 31836 ncRNA 105425 Mm.441540 B930053N05Rik AA517664 - - RIKEN cDNA B930053N05 gene protein-coding 108168889 XR_001783950 LOC108168889 - - 3 F2.2 uncharacterized LOC108168889 ncRNA 208624 Mm.24950 NM_145939 ENSMUSG00000033809 Alg3 D16Ertd36e|not - 16 B1|16 12.48 cM asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase) protein-coding 171224 Mm.377183 NM_134190 ENSMUSG00000061150 Vmn1r229 V1re1 - 17|17 A3.2 vomeronasal 1 receptor 229 protein-coding 677289 Mm.350054 NR_033261 ENSMUSG00000043795 Prr33 Gm14492 - 7 F5|7 proline rich 33 ncRNA 666125 Gm7939 EG666125 - 5|5 E3 predicted gene 7939 pseudo 102637461 XR_379514 Gm34264 - - 9 B|9 predicted gene, 34264 ncRNA 72693 Mm.297698 NM_028325 ENSMUSG00000036699 Zcchc12 2810028A01Rik|AV136720|Sizn1 - X|X A3.3 zinc finger, CCHC domain containing 12 protein-coding 234384 Mm.213010 NM_183170 ENSMUSG00000035559 Mpv17l2 Fksg24 - 8|8 B3.3 MPV17 mitochondrial membrane protein-like 2 protein-coding 223473 Mm.258402 NM_145469 ENSMUSG00000038879 Nipal2 9330161F08Rik|Npal2 - 15|15 B3.1 NIPA-like domain containing 2 protein-coding 52858 Mm.28219 NM_026638 ENSMUSG00000030682 Cdipt 9530042F15Rik|D7Bwg0575e|Pis|Pis1 - 7 F3|7 69.26 cM CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) protein-coding 102635352 XR_379613 Gm32714 - - 9 D|9 predicted gene, 32714 ncRNA 11630 Mm.292082 NM_172393 ENSMUSG00000019866 Crybg1 AI462491|AI463325|Aim1 - 10 B2|10 23.14 cM crystallin beta-gamma domain containing 1 protein-coding 268857 Mm.215994 NM_175547 ENSMUSG00000049871 Nlrc3 CLR16.2|D230007K08Rik|mFLJ00348 - 16|16 A1 NLR family, CARD domain containing 3 protein-coding 105242668 XM_011241556 Gm38821 - - 6 B3|6 predicted gene, 38821 protein-coding 108167674 LOC108167674 - - 9 E3.1 60S ribosomal protein L37 pseudogene pseudo 100316665 NR_035412 ENSMUSG00000080574 Mir466i Mirn466i|mmu-mir-466i - 13 A2|13 6.05 cM microRNA 466i ncRNA 100417649 Gm18738 - - 17|17 E1.3 ubiquitin fusion degradation 1 like pseudogene pseudo 666184 Mm.422381 NM_001198988 ENSMUSG00000072931 Gm15080 Ott-like - X F2|X predicted gene 15080 protein-coding 16195 Mm.4364 NM_010560 ENSMUSG00000021756 Il6st 5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130 - 13 D2.2|13 63.73 cM interleukin 6 signal transducer protein-coding 100418212 Gm19076 - - 18|18 E1 proteasome (prosome, macropain) subunit, beta type 1 pseudogene pseudo 105244908 LOC105244908 - - 12 C1 eukaryotic translation initiation factor 4E pseudogene pseudo 70408 Mm.389351 NM_029763 ENSMUSG00000027427 Polr3f 2810411G20Rik|3010019O03Rik|3110032A07Rik|RPC39|RPC6 - 2|2 G1 polymerase (RNA) III (DNA directed) polypeptide F protein-coding 52787 D10Bwg0719e - - - DNA segment, Chr 10, Brigham & Women's Genetics 0719 expressed unknown 72020 Mm.25960 NM_028059 ENSMUSG00000047141 Zfp654 1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654 - 16|16 C1.3 zinc finger protein 654 protein-coding 107851 Ifx Hsv-1|If-X - - NDV-induced circulating interferon, X-linked protein-coding 319253 Mm.261395 9630030I15Rik - - 10|10 RIKEN cDNA 9630030I15 gene protein-coding 102639989 XR_374174 Gm36171 - - 2 A3|2 predicted gene, 36171 ncRNA 67872 Mm.21714 NM_001162855 ENSMUSG00000040331 Nsmce4a 2410003A14Rik - 7|7 F3 NSE4 homolog A, SMC5-SMC6 complex component protein-coding 626503 Gm6681 EG626503 - 6|6 D3 ribosomal protein S8 pseudogene pseudo 668317 Gm9102 EG668317 - 10|10 D3 ribosomal protein L29 pseudogene pseudo 13521 Mm.24803 NM_007885 ENSMUSG00000034320 Slc26a2 Dtd|ST-OB - 18|18 E1 solute carrier family 26 (sulfate transporter), member 2 protein-coding 112163 Scc2 - - 2 23.71 cM colon tumor susceptibility 2 unknown 100043335 Mm.247464 NR_028311 Gm4371 EG667874|Gm8854 - 15 F1|15 eukaryotic translation initiation factor 3, subunit I pseudogene pseudo 102678 AU022331 - - - expressed sequence AU022331 protein-coding 102636441 XR_389978 Gm33504 - - 7 F5|7 predicted gene, 33504 ncRNA 100035168 Igan3 - - 9 16.12 cM IgA nephropathy 3 unknown 28194 Mm.439846 NM_133996 ENSMUSG00000051716 Apon AI195275|D10Ucla2 - 10 D3|10 76.5 cM apolipoprotein N protein-coding 100416809 Gm18268 - - 17|17 B1 olfactory receptor 1360 pseudogene pseudo 258865 Mm.389295 NM_146865 ENSMUSG00000075221 Olfr992 MOR203-1 - 2|2 D olfactory receptor 992 protein-coding 102641146 Gm38536 - - 8|8 predicted gene, 38536 ncRNA 11790 Mm.275397 NM_007463 ENSMUSG00000026207 Speg AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297 - 1 C4|1 38.88 cM SPEG complex locus protein-coding 110876 Mm.220329 NM_001099298 ENSMUSG00000075318 Scn2a 6430408L10|A230052E19Rik|Nav1.2|Scn2a1 - 2 C1.3|2 38.61 cM sodium channel, voltage-gated, type II, alpha protein-coding 114608 Cia5 mcia2 - 3 37.01 cM collagen induced arthritis QTL 5 unknown 78757 Mm.275811 NM_030168 ENSMUSG00000050310 Rictor 4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik - 15|15 A1 RPTOR independent companion of MTOR, complex 2 protein-coding 102637589 Gm15870 - - 6|6 62.66 cM predicted gene 15870 ncRNA 100417405 Gm18592 - - 12|12 D1 farnesyl diphosphate synthetase pseudogene pseudo 110120450 LOC110120450 - - - VISTA enhancer mm1541 biological-region 100042087 Gm3657 - - X A3.1|X predicted gene 3657 pseudo 102631785 XR_380041 Gm30033 - - 10 A1|10 predicted gene, 30033 ncRNA 24111 Mm.89984 NM_011910 ENSMUSG00000028963 Uts2 UII|Ucn2|prepro-UII - 4|4 E2 urotensin 2 protein-coding 61858 D1Mit374 - - - DNA segment, Chr 1, Massachusetts Institute of Technology 374 unknown 105244506 Mm.406311 Gm16253 - - 3|3 41.93 cM predicted gene 16253 ncRNA 100039269 XM_001472401 Gm2128 - - 7 B3|7 predicted gene 2128 protein-coding 100470 Mm.26698 NM_133892 ENSMUSG00000024903 Lao1 AW990848 - 4|4 D2.1 L-amino acid oxidase 1 protein-coding 74763 Mm.28403 NM_029090 ENSMUSG00000005982 Naa60 1200013P24Rik|AI315146|HAT4|Nat15|NatF - 16|16 A1 N(alpha)-acetyltransferase 60, NatF catalytic subunit protein-coding 243905 Mm.322432 NM_001033355 ENSMUSG00000074221 Zfp568 C80731|Gm1691|Znf568|chato - 7|7 B1 zinc finger protein 568 protein-coding 62985 D17Mit242 - - 17 49.4 cM DNA Segment, Chr 17, Massachusetts Institute of Technology 242 unknown 99003 Mm.274314 NM_001123327 ENSMUSG00000074994 Qser1 4732486I23Rik|AI502974 - 2|2 E2 glutamine and serine rich 1 protein-coding 17101 Mm.342337 NM_010748 ENSMUSG00000019726 Lyst D13Sfk13|beige|bg - 13 A1|13 5.28 cM lysosomal trafficking regulator protein-coding 105245612 XR_873870 Gm41042 - - 13 D1|13 predicted gene, 41042 ncRNA 102636100 XR_001782788 Gm27321 - - X D|X predicted gene, 27321 ncRNA 403346 A730062M13Rik - - - RIKEN cDNA A730062M13 gene protein-coding 74340 Mm.210899 NM_021414 ENSMUSG00000029772 Ahcyl2 4631427C17Rik|AI227036|Adohcyase3|mKIAA0828 - 6|6 A3.3 S-adenosylhomocysteine hydrolase-like 2 protein-coding 140499 Mm.371673 NM_021402 ENSMUSG00000023286 Ube2j2 1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p - 4 E2|4 87.66 cM ubiquitin-conjugating enzyme E2J 2 protein-coding 102639347 XR_388710 Gm35681 - - 11 B2|11 predicted gene, 35681 ncRNA 64099 Mm.251356 NM_022321 ENSMUSG00000022439 Parvg AI413459 - 15|15 E2 parvin, gamma protein-coding 100503547 Gm13650 - - 2|2 45.94 cM ubiquitin-conjugating enzyme E2 variant 2-like pseudo 100041464 Gm3355 - - 17 A2|17 predicted gene 3355 pseudo 26888 Mm.47384 NM_011999 ENSMUSG00000030148 Clec4a2 Clec4a|Clecsf6|DCIR|Dcir1 - 6 F2|6 58.18 cM C-type lectin domain family 4, member a2 protein-coding 100763 Mm.137746 NM_133907 ENSMUSG00000039000 Ube3c AI853514|mKIAA0010 - 5|5 B1 ubiquitin protein ligase E3C protein-coding 109748 Cat5 To2 - - dominant cataract 5 protein-coding 102639136 XR_378899 Gm35520 Gm45567 - 8 A4|8 predicted gene, 35520 ncRNA 378473 Vaultrc-ps1 Mvg2 - 8|8 B3.1 vault RNA component pseudogene 1 pseudo 108167571 XM_017313051 Gm43263 - - 8 B3.3|8 predicted gene 43263 protein-coding 102639960 XR_389520 Gm36149 - - 5 F|5 predicted gene, 36149 ncRNA 102633331 XR_872049 Gm31182 - - 10 D2|10 predicted gene, 31182 ncRNA 24081 Tcra-V22.4 - - - T cell receptor alpha, variable 22.4 other 112306 Tlsr7 - - 16 3.39 cM thymic lymphoma suppressor region 7 unknown 108169014 Gm46895 - - 4 E1|4 predicted gene, 46895 pseudo 100041593 Mm.407493 XM_001473394 ENSMUSG00000096271 LOC100041593 - - - C-C motif chemokine 21c protein-coding 110733 Idd16 - - 17 17.98 cM insulin dependent diabetes susceptibility 16 protein-coding 100036388 Eac4 - - - ethyl alcohol consumption QTL 4 unknown 54200 Mm.271634 NM_017465 ENSMUSG00000003271 Sult2b1 AI326997|BB173635|ST2B1|SULT2B - 7|7 B3 sulfotransferase family, cytosolic, 2B, member 1 protein-coding 22658 Mm.2418 NM_009545 ENSMUSG00000018537 Pcgf2 Mel18|Rnf110|Zfp144|mel-18 - 11 D|11 61.06 cM polycomb group ring finger 2 protein-coding 98845 Mm.27451 NM_133191 ENSMUSG00000025504 Eps8l2 AI042819|AW545405|Eps8r2 - 7|7 F5 EPS8-like 2 protein-coding 12022 Mm.42241 NM_007526 ENSMUSG00000021381 Barx1 - - 13 A5|13 24.9 cM BarH-like homeobox 1 protein-coding 100043192 Rpl31-ps14 Gm10072 - 1|1 C3 ribosomal protein L31, pseudogene 14 pseudo 105244210 XR_866474 Gm39859 - - 2 C3|2 predicted gene, 39859 ncRNA 102634136 XR_386424 Gm31792 - - 18 E4|18 predicted gene, 31792 ncRNA 52068 D4Ertd78e - - 4 50.85 cM DNA segment, Chr 4, ERATO Doi 78, expressed unknown 71966 Mm.274734 NM_028024 ENSMUSG00000017837 Nkiras2 2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2 - 11|11 D NFKB inhibitor interacting Ras-like protein 2 protein-coding 61540 D9Mit118 - - 9 68.0 cM DNA segment, Chr 9, Massachusetts Institute of Technology 118 unknown 102632939 XR_390437 Gm30886 - - 4 A3|4 predicted gene, 30886 ncRNA 53670 D7Dkj1 D7Or1 - - DNA segment, Chr 7, D.K. Johnson 1 unknown 100417679 Gm17709 - - 8|8 E1 ornithine decarboxylase, structural 1 pseudogene pseudo 72960 Mm.182401 NM_028404 ENSMUSG00000000934 Top1mt 2900052H09Rik - 15|15 D3 DNA topoisomerase 1, mitochondrial protein-coding 667373 Mm.371956 NM_001101605 ENSMUSG00000079339 Ifit1bl1 Gm14446|Ifit1c - 19 C1|19 interferon induced protein with tetratricpeptide repeats 1B like 1 protein-coding 52740 D1Wsu1e - - - DNA segment, Chr 1, Wayne State University 1, expressed unknown 100418220 Gm19078 - - 6|6 C1 eukaryotic translation initiation factor 3, subunit H pseudogene pseudo 70248 Mm.148693 NM_133188 ENSMUSG00000069565 Dazap1 2410042M16Rik|mPrrp - 10|10 C1 DAZ associated protein 1 protein-coding 235344 Mm.104932 NM_178710 ENSMUSG00000037112 Sik2 G630080D20Rik|Snf1lk2 - 9|9 A5.3 salt inducible kinase 2 protein-coding 100417229 Gm18468 Gm18457 - 7|7 A3 crumbs homolog 1 pseudogene pseudo 100042017 Gm11341 - - 13|13 A3.1 ribosomal protein L27a pseudogene pseudo 68040 Mm.300404 NM_024215 ENSMUSG00000028840 Zfp593 3110024A21Rik|AV062409|E130106C14Rik|ZNF593 - 4|4 D3 zinc finger protein 593 protein-coding 105245664 XR_874119 Gm41087 - - 14 A1|14 predicted gene, 41087 ncRNA 102632041 XR_874946 Gm30216 - - 14 E3|14 predicted gene, 30216 ncRNA 101056118 Gm29782 - - 8|8 predicted gene, 29782 ncRNA 102633248 XR_375878 Gm31120 - - 3 F2.1|3 predicted gene, 31120 ncRNA 58901 Mm.442813 AI449595 - - - EST AI449595 protein-coding 108449882 LOC108449882 Lhb - - Shox2 limb hindbrain control region biological-region 399558 Mm.341948 NM_201518 ENSMUSG00000047414 Flrt2 - - 12|12 E fibronectin leucine rich transmembrane protein 2 protein-coding 52018 D13Ertd570e - - 13 35.97 cM DNA segment, Chr 13, ERATO Doi 570, expressed unknown 100417682 Gm18762 - - 14|14 C1 zinc finger, BED domain containing 4 pseudogene pseudo 106875 AI115542 - - - expressed sequence AI115542 unknown 74695 Mm.159302 4930510E17Rik - - 9|9 A5.3 RIKEN cDNA 4930510E17 gene protein-coding 69285 1700011L03Rik - - 8|8 RIKEN cDNA 1700011L03 gene protein-coding 116821 Angle2 Angle-2 - - angle of entrainment 2 unknown 74746 5830407F19Rik - - 2|2 RIKEN cDNA 5830407F19 gene protein-coding 27789 565M12F - - - DNA segment, 56M12F (Research Genetics) unknown 102636794 XR_377559 Gm33767 - - 6 B1|6 predicted gene, 33767 ncRNA 16172 Mm.4481 NM_008359 ENSMUSG00000002897 Il17ra AW538159|Cdw217|Il17r|VDw217 - 6 F1|6 56.95 cM interleukin 17 receptor A protein-coding 67080 Mm.236287 NM_144953 ENSMUSG00000043629 1700019D03Rik 2410136C24Rik|AA410151|smAKAP - 1|1 C1.1 RIKEN cDNA 1700019D03 gene protein-coding 109502 Alcp15 - - - alcohol preference locus 15, male specific unknown 77622 Mm.440275 NM_029943 ENSMUSG00000025269 Apex2 C430040P13Rik|ape2 - X|X F3 apurinic/apyrimidinic endonuclease 2 protein-coding 53021 C8SP6 - - - DNA segment, C8SP6 unknown 258075 Mm.377343 NM_001011824 ENSMUSG00000095957 Olfr832 MOR153-1 - 9|9 A2 olfactory receptor 832 protein-coding 100049170 Mm.288868 4632427I20Rik - - - RIKEN cDNA 4632427I20 gene unknown 635169 Mm.346755 NM_001134733 ENSMUSG00000028813 CK137956 - - 4|4 D2.2 cDNA sequence CK137956 protein-coding 627751 Gm6786 EG627751 - 6|6 C1 WW domain binding protein 11 pseudogene pseudo 380683 Mm.296806 NM_001029937 ENSMUSG00000054986 Sec14l3 1110069O07Rik - 11|11 A1 SEC14-like lipid binding 3 protein-coding 100861708 XM_017316337 Gm21154 - - 14 B-C1|14 predicted gene, 21154 protein-coding 54630 Mm.232232 NM_175097 ENSMUSG00000031145 Prickle3 Lmo6|Pk3|Sfc16 - X A1.1|X 3.45 cM prickle planar cell polarity protein 3 protein-coding 21693 Tel-rs4 - - - telomere, related sequence 4 protein-coding 20815 Mm.15252 NM_016795 ENSMUSG00000004865 Srpk1 AU017960 - 17|17 A3.3 serine/arginine-rich protein specific kinase 1 protein-coding 73238 3110049I03Rik - - 16|16 RIKEN cDNA 3110049I03 gene protein-coding 100035700 Ctrq1 Ctrq-1 - - C. trachomatis resistance QTL 1 unknown 100046950 XM_006519922 Gm17778 - - 14|14 D1 predicted gene, 17778 protein-coding 64293 Mm.103714 NM_022416 ENSMUSG00000029123 Stk32b 2510009F08Rik|STKG6|Stk32|YANK2 - 5|5 B3 serine/threonine kinase 32B protein-coding 100039242 Gm2116 - - 18|18 E3 ATP-binding cassette, sub-family F (GCN20), member 2 pseudogene pseudo 62303 D1Mit154 - - 1 98.03 cM DNA segment, Chr 1, Massachusetts Institute of Technology 154 unknown 85128 D7Mit156 - - 7 20.65 cM DNA segment, Chr 7, Massachusetts Institute of Technology 156 unknown 258475 Mm.377522 NM_146482 ENSMUSG00000096356 Olfr889 MOR162-2 - 9|9 A4 olfactory receptor 889 protein-coding 102467341 n-TKctt3 n-Tk3 - - nuclear encoded tRNA lysine 3 (anticodon CTT) tRNA 240034 Mm.34723 NM_001008501 ENSMUSG00000067928 Zfp760 9430018I06|BC029103 - 17|17 A3.2 zinc finger protein 760 protein-coding 319823 Mm.445045 NM_177010 F630003A18Rik Cd200r5 - 16|16 B4 RIKEN cDNA F630003A18 gene protein-coding 100416113 Gm15765 - - 14|14 C1 tubulin, beta 6 pseudogene pseudo 101055992 LOC101055992 - - X A1.3 ribonuclease UK114 pseudogene pseudo 382074 Mm.335103 NM_001033469 ENSMUSG00000074397 Foxr1 Foxn5|Gm1115 - 9 A5.2|9 24.84 cM forkhead box R1 protein-coding 93850 D3Jor1 - - - DNA segment, Chr 3, Barbara Jordan 1 unknown 100126766 Mm.471591 NM_001251916 ENSMUSG00000093957 Esp3 Gm21945 - 17 B2|17 exocrine gland secreted peptide 3 protein-coding 114774 Mm.391419 NM_054056 ENSMUSG00000035873 Pawr 2310001G03Rik|PAR4|Par-4 - 10|10 D1 PRKC, apoptosis, WT1, regulator protein-coding 258671 Mm.271513 NM_146676 ENSMUSG00000059862 Olfr826 MOR210-2 - 10|10 D3 olfactory receptor 826 protein-coding 382884 Gm5206 EG382884 - 14|14 C1 predicted pseudogene 5206 pseudo 102466848 NR_106154 ENSMUSG00000105964 Mir219c mmu-mir-219c - 17|17 B1 microRNA 219c ncRNA 100578 AI181832 - - - expressed sequence AI181832 unknown 72316 Mm.490534 NR_045904 ENSMUSG00000100335 2310008N11Rik - - 8|8 A2 RIKEN cDNA 2310008N11 gene ncRNA 75250 4930554D03Rik - - 2|2 RIKEN cDNA 4930554D03 gene protein-coding 666822 Vmn1r-ps11 EG666822|Gm8308 - 6|6 B3 vomeronasal 1 receptor, pseudogene 11 pseudo 15184 Mm.22665 NM_010412 ENSMUSG00000008855 Hdac5 AI426555|Hdac4|mHDA1|mKIAA0600 - 11|11 D histone deacetylase 5 protein-coding 102632310 Gm26626 - - 16|16 predicted gene, 26626 ncRNA 102637536 XR_373691 Gm34320 - - 1 H2.3|1 predicted gene, 34320 ncRNA 53663 D4Mc2 D4McC2 - - DNA segment, Chr 4, McClelland 2 unknown 102991 Mm.199793 NM_001033211 ENSMUSG00000073294 AU022751 AU023811 - X|X A1.1 expressed sequence AU022751 protein-coding 77522 Mm.387207 NM_029921 ENSMUSG00000029829 Tmem213 D630002J15Rik - 6|6 B1 transmembrane protein 213 protein-coding 102640929 XR_389100 Gm36876 - - 11 E1|11 predicted gene, 36876 ncRNA 100040970 Mm.289810 NR_110499 ENSMUSG00000046721 Rpl14-ps1 Gm9811 - 7 B3|7 ribosomal protein L14, pseudogene 1 pseudo 100416819 Gm18277 - - 14|14 D3 predicted gene, 18277 pseudo 100113415 Frct1 - - - fear conditioning traits 1 unknown 67701 Mm.27289 NM_026323 ENSMUSG00000017723 Wfdc2 1600023A02Rik|HE4|WAP5 - 2|2 H3 WAP four-disulfide core domain 2 protein-coding 105244364 Gm39987 - - 2|2 predicted gene, 39987 ncRNA 102633735 Gm31489 - - 15|15 predicted gene, 31489 pseudo 100038569 Mm.436793 Gm10558 - - - predicted gene 10558 unknown 12874 Mm.276736 NM_007754 ENSMUSG00000020841 Cpd AA960140|AW322530|D830034L15Rik - 11 B5|11 46.05 cM carboxypeptidase D protein-coding 56440 Mm.271891 NM_019727 ENSMUSG00000032382 Snx1 - - 9|9 C sorting nexin 1 protein-coding 105246708 XR_878532 Gm41953 - - 1 E4|1 predicted gene, 41953 ncRNA 105245368 Gm40834 - - 12|12 predicted gene, 40834 ncRNA 70508 Mm.28940 NM_027444 ENSMUSG00000022641 Bbx 5530401J07Rik|5730403O13Rik - 16|16 B5 bobby sox HMG box containing protein-coding 100417020 Gm18365 - - 17|17 C high mobility group box 1 pseudogene pseudo 104374 Enc - - - embryonic nucleus cataract unknown 385367 Gm5390 EG385367 - X|X A6 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo 100504715 Mm.290516 NM_001200002 ENSMUSG00000079260 Tmppe - - 9 F3|9 transmembrane protein with metallophosphoesterase domain protein-coding 108169088 Gm46931 - - 5 F|5 40S ribosomal protein S8 pseudogene pseudo 100418380 Gm19171 - - 8|8 C3 kallikrein related-peptidase 7 (chymotryptic, stratum corneum) pseudogene pseudo 100036143 Vtbt17 - - 15 26.07 cM vertebral trabecular bone trait 17 unknown 62030 D1Mit538 - - 1 59.96 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 538 unknown 723934 NR_029915 ENSMUSG00000105853 Mir376b Mirn376b|mir-376b - 12 F1|12 microRNA 376b ncRNA 62130 D2Mit1003 D13Mit40 - 2 74.74 cM DNA segment, Chr 2, Massachusetts Institute of Technology 1003 unknown 111632 Ms7 MMS7 - - minisatellites detected by probe MMS7 other 664977 Gm7434 EG664977 - 8|8 A1.1 predicted gene 7434 pseudo 100416501 Rpl17-ps6 Gm18130 - 13|13 A5 ribosomal protein L17, pseudogene 6 pseudo 282663 Mm.314490 NM_173052 ENSMUSG00000051029 Serpinb1b 6330533H24Rik|EIB|Serpin1b1|ovalbumin - 13 A3.3|13 13.81 cM serine (or cysteine) peptidase inhibitor, clade B, member 1b protein-coding 102632758 Gm30747 - - 13 D2.1|13 predicted gene, 30747 pseudo 258633 Mm.377603 NM_146640 ENSMUSG00000048197 Olfr1153 MOR177-7 - 2|2 D olfactory receptor 1153 protein-coding 108169190 XM_017321883 Gm46985 - - 6 B3|6 predicted gene, 46985 protein-coding 627189 Gm6736 EG627189 - 12|12 A1.1 predicted gene 6736 pseudo 100035704 Pstc4 - - - periosteal circumference 4 unknown 58220 Mm.292834 NM_021409 ENSMUSG00000044641 Pard6b AV025615|Par6b - 2|2 H3 par-6 family cell polarity regulator beta protein-coding 320877 D330023I04Rik - - 18|18 RIKEN cDNA D330023I04 gene protein-coding 667736 Mm.484619 NM_001099310 ENSMUSG00000073077 Gm8787 EG667736 - X|X B predicted gene 8787 protein-coding 17454 Mm.1597 NM_008619 ENSMUSG00000002227 Mov10 C77703|Mov-10 - 3|3 F2.2 Moloney leukemia virus 10 protein-coding 105245690 Gm41103 - - 14|14 predicted gene, 41103 ncRNA 258359 Mm.377456 NM_146362 ENSMUSG00000074947 Olfr1312 MOR245-20 - 2|2 E3 olfactory receptor 1312 protein-coding 102639158 XR_391585 Gm28258 - - 7 C|7 predicted gene 28258 ncRNA 667799 Gm8822 Actr3-ps|Gm1849 - X B|X ARP3 actin-related protein 3 homolog pseudogene pseudo 72711 Mm.344009 2810037O22Rik AU067820 - - RIKEN cDNA 2810037O22 gene protein-coding 277743 Mm.294614 NM_001085513 ENSMUSG00000006218 Fam131c Gm693 - 4|4 D3 family with sequence similarity 131, member C protein-coding 258020 Mm.377329 NM_001011801 ENSMUSG00000081649 Olfr213 MOR119-3 - 6|6 E3 olfactory receptor 213 protein-coding 108168063 XR_001780856 Gm46401 - - 13 A1|13 predicted gene, 46401 ncRNA 100034903 Cocia12 - - 16 44.37 cM cocaine induced activation 12 unknown 241846 Mm.21577 NM_177727 ENSMUSG00000039108 Lsm14b 9430078B04|BC040823 - 2|2 H4 LSM family member 14B protein-coding 16656 Mm.302758 NM_010657 ENSMUSG00000028634 Hivep3 2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3 - 4|4 D2.1 human immunodeficiency virus type I enhancer binding protein 3 protein-coding 110660 Scl2 Scl-2 - - susceptibility to cutaneous leishmaniasis 2 protein-coding 105246683 XR_878441 Gm41931 - - 1 E2.1-E2.2|1 predicted gene, 41931 ncRNA 100042708 Gm12027 - - 11|11 A3.1 predicted gene 12027 protein-coding 100504574 Gm20294 - - 18 E1|18 39.48 cM trafficking protein particle complex subunit 6B-like pseudo 100417561 Gm18689 - - 6|6 G1 taste receptor, type 2, member 109 pseudogene pseudo 100417510 Gm18658 - - 3|3 A1 ring finger and WD repeat domain 2 pseudogene pseudo 105244244 XR_866575 Gm39887 - - 2 E2|2 predicted gene, 39887 ncRNA 75581 Mm.154776 NM_023784 ENSMUSG00000029158 Yipf7 2310016N21Rik|Yip1b - 5|5 C3.1 Yip1 domain family, member 7 protein-coding 111328 Atp5b-rs - - - ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, related sequence protein-coding 243270 Mm.33362 NM_175520 ENSMUSG00000049241 Hcar1 Gpr81 - 5|5 F hydrocarboxylic acid receptor 1 protein-coding 100417608 Gm18713 - - 18|18 A1 ring finger and WD repeat domain 2 pseudogene pseudo 102632273 Mm.448673 XR_373274 Gm29506 - - 1 A5|1 predicted gene 29506 ncRNA 100503551 Lrrc8dos Gm15817 - 5|5 50.76 cM leucine rich repeat containing 8D, opposite strand ncRNA 109280123 LOC109280123 Mm1372 - - VISTA enhancer mm1372 biological-region 667120 Gm8468 EG667120 - 18|18 C ADP-ribosylation factor interacting protein 1 pseudogene pseudo 105246319 Gm41621 - - 17|17 predicted gene, 41621 ncRNA 102637036 Gm33946 - - 4|4 predicted gene, 33946 ncRNA 636752 Igkv4-62 EG636752|Gm7188|ab4 - 6|6 C1 immunoglobulin kappa variable 4-62 other 105244394 Gm40013 - - 2|2 predicted gene, 40013 ncRNA 100416398 Gm11622 - - 11|11 E1 predicted gene 11622 pseudo 102636498 XR_381565 Gm33548 - - 12 B3|12 predicted gene, 33548 ncRNA 102640034 Gm36204 - - 18|18 predicted gene, 36204 ncRNA 100416044 Gm17889 - - 5|5 A3 transketolase pseudogene pseudo 404493 Olfr1244-ps1 GA_x5J8B7W62NC-805000-804277 - 2|2 E1 olfactory receptor 1244, pseudogene 1 pseudo 433874 Gm5553 EG433874 - 5|5 B2 predicted gene 5553 pseudo 208171 Mm.186306 NM_172455 ENSMUSG00000033177 Tmprss7 B230219I23Rik|Gm1748 - 16|16 B5 transmembrane serine protease 7 protein-coding 112143 Afw2 - - - abdominal fat weight QTL 2 unknown 12259 Mm.439957 NM_007572 ENSMUSG00000036887 C1qa AI255395|C1q - 4 D3|4 69.05 cM complement component 1, q subcomponent, alpha polypeptide protein-coding 667238 Gm8532 EG667238 - 1|1 E4 adaptor-related protein complex AP-1, sigma 3 pseudogene pseudo 58545 D13Die44 - - 13 53.23 cM DNA segment, Chr 13, Dietrich 44 unknown 26934 Mm.273804 NM_012025 ENSMUSG00000023015 Racgap1 AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478 - 15|15 F1 Rac GTPase-activating protein 1 protein-coding 100885833 NR_049194 ENSMUSG00000093539 Mir5621 Gm22564|mir-5621|mmu-mir-5621 - 11|11 E2 microRNA 5621 ncRNA 100418048 Gm15783 - - 6|6 G3 MRT4, mRNA turnover 4, homolog pseudogene pseudo 207151 Mm.21365 NM_144785 ENSMUSG00000024757 Slc22a19 D630043A20Rik|OAT-5|Oat5|Slc22a9 - 19|19 A solute carrier family 22 (organic anion transporter), member 19 protein-coding 106049961 Sbe2 ECR1 - - Shh brain enhancer 2 biological-region 102636319 Gm28247 - - Y|Y predicted gene 28247 protein-coding 102634113 Mm.438733 XR_388081 Gm31774 Gm45775 - 8 E1|8 predicted gene, 31774 ncRNA 624860 Mm.432049 NM_001045542 ENSMUSG00000058287 Gm12253 Gm248 - 11 B1.3|11 predicted gene 12253 protein-coding 100417653 Gm18742 - - 15|15 B3.3 autophagy-related 16-like 1 pseudogene pseudo 100124439 NR_030557 ENSMUSG00000093187 Mir344-2 Mirn344-2|mir-344-2 - 7 C|7 microRNA 344-2 ncRNA 97820 Mm.24593 NM_133797 ENSMUSG00000025871 4833439L19Rik 4930558H15Rik|C81457|Kiaa1191|P33monox - 13|13 B1 RIKEN cDNA 4833439L19 gene protein-coding 111919 Iapls3-50 - - - intracisternal A particle, lymphocyte specific, probe 3-50 other 105246786 XR_878760 Gm42024 - - 5 F|5 predicted gene, 42024 ncRNA 270028 Mm.268163 NM_173446 ENSMUSG00000079157 Fam155a 6430500D16|AW121567|Tmem28 - 8|8 A1.1 family with sequence similarity 155, member A protein-coding 60966 DXMit203 - - X 2.9 cM DNA Segment, Chr X Massachusetts Institute of Technology 203 unknown 71338 Mm.126851 NM_175165 ENSMUSG00000048399 Tprg 5430420C16Rik|Tprg1 - 16|16 B1 transformation related protein 63 regulated protein-coding 320324 Mm.446411 9630033C03Rik - - 16|16 RIKEN cDNA 9630033C03 gene protein-coding 100035912 Lmrq6 - - - Leishmania major resistance QTL 6 unknown 100502956 Mm.439558 Gm19471 - - 14|14 16.54 cM predicted gene, 19471 unknown 71939 Mm.34173 NM_028010 ENSMUSG00000033576 Apol6 2310076O14Rik - 15|15 D3 apolipoprotein L 6 protein-coding 60840 D5Mit20 - - 5 47.77 cM DNA segment, Chr 5, Massachusetts Institute of Technology 20 unknown 105245675 XM_011244836 ENSMUSG00000094460 LOC105245675 - - 14 A1 uncharacterized LOC105245675 protein-coding 385354 Mm.393050 NM_001190332 ENSMUSG00000036131 Frmd7 EG665849|Gm1533 - X|X A5 FERM domain containing 7 protein-coding 102465767 NR_106122 ENSMUSG00000099185 Mir7662 Gm27876|mmu-mir-7662 - 10|10 B4 microRNA 7662 ncRNA 22703 Zfp42-ps1 - - 15|15 E3 zinc finger protein 48, pseudogene 1 pseudo 105246483 XR_877532 Gm41768 - - 18 E2|18 predicted gene, 41768 ncRNA 100041702 XM_011244837 ENSMUSG00000079371 Gm3476 - - 14 A1|14 predicted gene 3476 protein-coding 100041515 Mm.443041 NM_001205306 ENSMUSG00000096629 Gm3383 - - 14 A1|14 predicted gene 3383 protein-coding 102638315 Mm.404184 XR_378541 Gm34908 Gm35000 - 7 F3|7 predicted gene, 34908 ncRNA 63985 Mm.87312 NM_022023 ENSMUSG00000062014 Gmfb 3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e - 14 C1|14 24.32 cM glia maturation factor, beta protein-coding 319268 Mm.396094 A130026P03Rik - - 9|9 RIKEN cDNA A130026P03 gene protein-coding 108168484 XR_001782843 Gm46689 - - X C3|X predicted gene, 46689 ncRNA 61622 D8Mit274 - - 8 67.57 cM DNA segment, Chr 8, Massachusetts Institute of Technology 274 unknown 667889 Gm8862 EG667889 - 6|6 C1 ornithine decarboxylase, structural 1 pseudogene pseudo 100417549 Gm18682 - - 14|14 D2 heat shock protein 1 (chaperonin) pseudogene pseudo 100035078 W6q8 - - - weight 6 weeks QTL 8 unknown 621968 Mm.333009 Trbv1 Gm6273|TCRBV2S1|Tcrb-V2 - 6 18.93 cM|6 B1 T cell receptor beta, variable 1 other 102466257 NR_106194 ENSMUSG00000099227 Mir8114 Gm27382|mmu-mir-8114 - 1|1 G3 microRNA 8114 ncRNA 100504483 Cbx3-ps7 Gm10068 - 1 C1.3|1 29.15 cM chromobox 3, pseudogene 7 pseudo 384830 Hspd1-ps2 EG384830|Gm5349|Hspd-4p - 8|8 B3.1 heat shock protein 1 (chaperonin), pseudogene 2 pseudo 626315 XM_011247695 Gm6664 EG626315 - X|X A5 predicted gene 6664 protein-coding 102633355 Gm31200 - - 2|2 predicted gene, 31200 pseudo 381994 Mm.425466 NM_001256311 ENSMUSG00000095061 E030018B13Rik Gm1697 - 7|7 C RIKEN cDNA E030018B13 gene protein-coding 105245886 XR_875035 Gm41268 - - 15 A1|15 predicted gene, 41268 ncRNA 319385 Mm.447957 D130061D10Rik - - 7|7 RIKEN cDNA D130061D10 gene protein-coding 69968 2810404F17Rik - - 16|16 RIKEN cDNA 2810404F17 gene protein-coding 105246657 XR_001779085 Gm41914 - - 1 D|1 predicted gene, 41914 ncRNA 72549 Mm.46742 NM_180588 ENSMUSG00000033589 Reep4 2700029E10Rik - 14|14 D2 receptor accessory protein 4 protein-coding 219158 Mm.218284 NM_146055 ENSMUSG00000033712 Ccar2 2610301G19Rik|Dbc1|mKIAA1967 - 14|14 D2 cell cycle activator and apoptosis regulator 2 protein-coding 102635523 XR_387422 Gm32835 - - 1 E4|1 predicted gene, 32835 ncRNA 105243744 XR_878314 Gm39551 - - X F5|X predicted gene, 39551 ncRNA 100504591 Mm.441029 NR_045009 Gm15987 - - 6 F3|6 63.11 cM predicted gene 15987 ncRNA 52564 D10Ertd126e - - 10 50.35 cM DNA segment, Chr 10, ERATO Doi 126, expressed unknown 105242851 XM_011250746 Gm38947 - - 7 A1|7 predicted gene, 38947 protein-coding 60987 D19Mit6 - - - DNA segment, Chr 19, Massachusetts Institute of Technology 6 unknown 102638387 Gm34966 - - 8|8 predicted gene, 34966 ncRNA 62224 D16Mit93 - - 16 43.22 cM DNA segment, Chr 16, Massachusetts Institute of Technology 93 unknown 102639604 Gm35876 - - 6 G3|6 predicted gene, 35876 pseudo 62188 D15Mit46 - - 15 25.7 cM DNA segment, Chr 15, Massachusetts Institute of Technology 46 unknown 67068 Mm.23693 NM_025947 ENSMUSG00000047459 Dynlrb1 2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1 - 2|2 H1 dynein light chain roadblock-type 1 protein-coding 102634983 XR_876306 Gm32432 - - 16 C4|16 predicted gene, 32432 ncRNA 100418004 Gm18942 - - 10|10 A3 family with sequence similarity 54, member A pseudogene pseudo 21154 T(2;9)11H T11H - - reciprocal translocation, Chr 2 and 9, Harwell 11 other 102643289 Gm38665 - - 11|11 predicted gene, 38665 protein-coding 102633075 XR_386798 Gm30990 - - 19 D2|19 predicted gene, 30990 ncRNA 77370 Mm.417797 9530004M14Rik - - 8|8 RIKEN cDNA 9530004M14 gene ncRNA 109838 H51 H(ep) - - histocompatibility 51 protein-coding 100503469 Mm.440636 NR_045749 ENSMUSG00000105552 Gm19710 - - 3 F1|3 39.19 cM predicted gene, 19710 ncRNA 110894 Cx3cl1-rs1 Cx3C-rs1|Scyd1-rs1 - - chemokine (C-X3-C motif) ligand 1, related sequence 1 protein-coding 228961 Mm.295629 NM_213733 ENSMUSG00000039263 Npepl1 BC023239|C85514|mKIAA1974 - 2|2 H4 aminopeptidase-like 1 protein-coding 114062 Axtrb4 - - - anxiety-related behavior 4 unknown 329977 Mm.252019 NM_028429 ENSMUSG00000051435 Fhad1 2900090M10Rik|B230311F11 - 4|4 E1 forkhead-associated (FHA) phosphopeptide binding domain 1 protein-coding 105242987 XR_869779 Gm39045 - - 7 D3|7 predicted gene, 39045 ncRNA 211446 Mm.261859 NM_177333 ENSMUSG00000034152 Exoc3 2810050O03Rik|E430013E20Rik|Sec6|Sec6l1 - 13|13 C1 exocyst complex component 3 protein-coding 104263 Mm.260479 NM_173001 ENSMUSG00000053470 Kdm3a 1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga - 6|6 C1 lysine (K)-specific demethylase 3A protein-coding 100504202 Mm.403801 NR_038019 ENSMUSG00000111962 Gm20110 - - 10 D1|10 51.2 cM predicted gene, 20110 ncRNA 668555 Gm9239 EG668555 - 7|7 B3 predicted gene 9239 pseudo 71083 Mm.422619 NM_001142691 ENSMUSG00000067562 Dmrtc1c1 4933424F23Rik|Dmrt8.3|Dmrtc1c - X|X D DMRT-like family C1c1 protein-coding 102467500 n-TCgca33 n-Tc33 - 6 B2.3|6 nuclear encoded tRNA cysteine 33 (anticodon GCA) tRNA 61333 D3Mit196 - - 3 65.84 cM DNA segment, Chr 3, Massachusetts Institute of Technology 196 unknown 654456 Mm.422382 NR_002881 ENSMUSG00000081154 Defa-ps13 Defb54-ps - 8 A1.3|8 defensin, alpha, pseudogene 13 pseudo 18166 Mm.5112 NM_010934 ENSMUSG00000036437 Npy1r NPY1-R|Npyr|Y1-R - 8 B3.1|8 33.15 cM neuropeptide Y receptor Y1 protein-coding 100217449 Mm.429560 NR_034044 ENSMUSG00000077571 Snora36b MBI-87 - 1 H5|1 small nucleolar RNA, H/ACA box 36B snoRNA 101214 Mm.196598 NM_198102 ENSMUSG00000029817 Tra2a 1500010G04Rik|AL022798|G430041M01Rik|mAWMS1 - 6|6 B2.3 transformer 2 alpha protein-coding 13030 Mm.236553 NM_007798 ENSMUSG00000021939 Ctsb CB - 14 D1|14 33.24 cM cathepsin B protein-coding 102635377 Gm32734 - - 15|15 predicted gene, 32734 protein-coding 17714 Mm.269657 NM_021296 ENSMUSG00000024580 Grpel2 mt-GrpE#2|mt-Grpel2 - 18|18 E1 GrpE-like 2, mitochondrial protein-coding 19545 Rb(4.14)11Tu Rb11Tu - - Robertsonian translocation, Chr 4 and 14, Tubingen 11 other 320975 Mm.132509 NR_040335 ENSMUSG00000085316 D330050G23Rik - - 2|2 E5 RIKEN cDNA D330050G23 gene ncRNA 228443 Mm.377244 NM_207236 ENSMUSG00000109322 Olfr1283 GA_x6K02T2Q125-72420217-72421134|MOR248-19 - 2|2 E3 olfactory receptor 1283 protein-coding 62667 D15Mit134 - - 15 39.29 cM DNA segment, Chr 15, Massachusetts Institute of Technology 134 unknown 100417788 Gm18826 - - 16|16 C3.2 aldo-keto reductase family 1, member D1 pseudogene pseudo 111338 Ms15-9 - - - minisatellite 15-9 other 434865 Mm.473681 NM_001114383 ENSMUSG00000079387 Luzp4 - - X F3|X leucine zipper protein 4 protein-coding 100417753 Gm20950 - - 17|17 B1 histocompatibility 2, D region locus 1 pseudogene pseudo 105242596 Gm38764 - - 6|6 predicted gene, 38764 ncRNA 108168076 XR_001780890 ENSMUSG00000114851 Gm46409 - - 13 A3.3|13 predicted gene, 46409 ncRNA 100124370 Traj19 Gm16655 - 14|14 C2 T cell receptor alpha joining 19 other 105243881 XR_872284 Gm39606 - - 11 A3.1|11 predicted gene, 39606 ncRNA 71916 Mm.62979 NM_028002 ENSMUSG00000020648 Dus4l 2310069P03Rik|2700089B10Rik|AI482040|Pp35 - 12|12 A2 dihydrouridine synthase 4-like (S. cerevisiae) protein-coding 108168406 XR_001782639 Gm46645 - - 19 A|19 predicted gene, 46645 ncRNA 19244 Mm.193688 NM_008974 ENSMUSG00000028788 Ptp4a2 Prl-2 - 4|4 D2.2 protein tyrosine phosphatase 4a2 protein-coding 100042421 Gm3835 H3mm10 - 8 B3.3|8 predicted pseudogene 3835 pseudo 15410 Mm.342481 NM_010458 ENSMUSG00000048763 Hoxb3 Hox-2.7 - 11 D|11 59.84 cM homeobox B3 protein-coding 70144 Mm.491178 NM_001081255 ENSMUSG00000022801 Lrch3 2210409B11Rik|AW215594|Gm1742 - 16|16 B3 leucine-rich repeats and calponin homology (CH) domain containing 3 protein-coding 21452 Mm.20948 NM_015749 ENSMUSG00000020432 Tcn2 AW208754|Tcn-2 - 11 A1|11 2.76 cM transcobalamin 2 protein-coding 105245357 XR_873152 Gm40827 - - 13 A2|13 predicted gene, 40827 ncRNA 231510 Mm.271911 NM_172715 ENSMUSG00000029314 Gpat3 1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3 - 5|5 E4 glycerol-3-phosphate acyltransferase 3 protein-coding 108168112 XR_001781063 Gm46438 - - 13 D2.3|13 predicted gene, 46438 ncRNA 74034 Mm.386816 NR_130957 ENSMUSG00000042579 4632404H12Rik - - 3|3 F1 RIKEN cDNA 4632404H12 gene ncRNA 107554 Tel18q - - - telomeric sequence, Chr 18, q arm protein-coding 102641105 XR_406815 Gm38534 Gm44783 - 11 C|11 predicted gene, 38534 ncRNA 102688 Mm.394901 NR_040760 ENSMUSG00000109890 AU023762 - - 9 F3|9 expressed sequence AU023762 ncRNA 626693 Mm.447083 NR_046026 ENSMUSG00000085499 Gm15713 - - 16|16 B4 predicted gene 15713 ncRNA 258127 Olfr407-ps1 MOR125-4P - 11|11 B5 olfactory receptor 407, pseudogene 1 pseudo 665367 Gm12350 - - 4|4 A5 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene pseudo 629153 Gm6952 EG629153 - X|X B predicted gene 6952 pseudo 21934 Mm.6251 NM_009399 ENSMUSG00000026321 Tnfrsf11a Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK - 1|1 E2.1 tumor necrosis factor receptor superfamily, member 11a, NFKB activator protein-coding 100316753 NR_035454 ENSMUSG00000089555 Mir1933 mir-1933|mmu-mir-1933 - 11 A3.1|11 13.89 cM microRNA 1933 ncRNA 259143 Mm.377864 NM_001011527 ENSMUSG00000060759 Olfr503 MOR34-12|MOR34-8P|MOR34-9|Olfr1548 - 7|7 E3 olfactory receptor 503 protein-coding 108167794 XR_001779717 Gm46211 - - 10 A2|10 predicted gene, 46211 ncRNA 102634400 XR_380254 Gm31992 - - 10 B1|10 predicted gene, 31992 ncRNA 16569 Mm.315560 NM_008444 ENSMUSG00000027475 Kif3b AI854312|AW549267|mKIAA0359 - 2 H1|2 75.41 cM kinesin family member 3B protein-coding 100093653 Trnas-cga - - - transfer RNA serine (anticodon CGA) tRNA 547347 Mm.484641 NM_001034909 ENSMUSG00000073407 Gm6034 EG547347|H2-gs14-2 - 17 B1|17 predicted gene 6034 protein-coding 102640695 Gm28181 - - 1|1 predicted gene 28181 ncRNA 76398 XR_880766 ENSMUSG00000105651 1700017M07Rik Gm43003 - 3|3 A3 RIKEN cDNA 1700017M07 gene ncRNA 102631515 XR_386771 Gm29834 - - 19 C3|19 predicted gene, 29834 ncRNA 61283 D2Mit260 - - 2 73.8 cM DNA segment, Chr 2, Massachusetts Institute of Technology 260 unknown 217716 Mm.311981 NM_145446 ENSMUSG00000021245 Mlh3 AV125803|BB126472 - 12|12 D1 mutL homolog 3 protein-coding 245884 Mm.33683 NM_001101486 ENSMUSG00000079652 Fam71f2 AI507611|GARI - 6|6 A3.3 family with sequence similarity 71, member F2 protein-coding 13805 Mm.225297 NM_007932 ENSMUSG00000026814 Eng AI528660|AI662476|CD105|Endo|S-endoglin - 2 B|2 22.09 cM endoglin protein-coding 100416183 Gm17961 - - 2|2 H4 zinc finger protein 930 pseudogene pseudo 62116 D12Mit87 - - 12 22.62 cM DNA segment, Chr 12, Massachusetts Institute of Technology 87 unknown 108168964 LOC108168964 - - 4 E2 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 pseudogene pseudo 102633809 LOC102633809 - - 13 B3 guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 pseudogene pseudo 624198 Gm6483 EG624198 - 8|8 A1.3 cadherin 11 pseudogene pseudo 382253 Mm.443717 NM_001024624 ENSMUSG00000031292 Cdkl5 BC038161|Stk9 - X F4|X 73.95 cM cyclin-dependent kinase-like 5 protein-coding 102633665 XR_390446 Gm31436 - - 4 A3|4 predicted gene, 31436 ncRNA 100504019 C1qtnf9bos Gm20017 - 14|14 31.94 cM C1q and tumor necrosis factor related protein 9, opposite strand protein-coding 100036078 Hlpx - - 8 74.46 cM heterogeneity in eye lens protein photooxidation kinetics unknown 69548 Mm.269712 NR_033514 2310015A10Rik 5330419I17Rik - 12|12 C3 RIKEN cDNA 2310015A10 gene ncRNA 74499 Mm.265602 NM_024449 ENSMUSG00000001494 Sost 5430411E23Rik - 11|11 D sclerostin protein-coding 100034818 Musz2 Ms2 - - muscle size 2 unknown 68476 1110003F10Rik - - 5|5 RIKEN cDNA 1110003F10 gene protein-coding 404588 AL117801 - - - expressed sequence AL117801 unknown 61943 D6Mit316 - - 6 27.41 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 316 unknown 102637287 Gm34139 - - 3 G1|3 enhancer of rudimentary homolog pseudo 666100 Gm7930 EG666100 - 18|18 B1 predicted gene 7930 pseudo 243764 Mm.448632 NM_203491 ENSMUSG00000045613 Chrm2 AChR-M2|Chrm-2|M2 - 6|6 B1 cholinergic receptor, muscarinic 2, cardiac protein-coding 60945 DXMit42 - - - DNA segment, Chr X, Massachusetts Institute of Technology 42 unknown 102466772 NR_105917 ENSMUSG00000098451 Mir6952 Gm27948|mmu-mir-6952 - 15|15 D3 microRNA 6952 ncRNA 62375 D12Mit151 - - 12 3.88 cM DNA segment, Chr 12, Massachusetts Institute of Technology 151 unknown 110901 Acadvl-rs1 - - - acyl-Coenzyme A dehydrogenase, long chain, related sequence 1 protein-coding 101056099 XM_011251063 Gm21799 - - Y B|Y predicted gene, 21799 protein-coding 622129 Mm.366879 NM_001037911 Gm6288 EG622129 - 6 G3|6 predicted gene 6288 unknown 100418105 Gm15372 - - 1|1 D predicted gene 15372 pseudo 105246838 XR_879464 Gm42060 - - 19 A|19 predicted gene, 42060 ncRNA 102636616 Gm20904 - - Y|Y predicted gene, 20904 protein-coding 64898 Mm.227924 NM_022882 ENSMUSG00000024052 Lpin2 2610511G02Rik|AI481352|AW742896 - 17|17 E1.3 lipin 2 protein-coding 100042055 Mm.429109 NM_001244671 ENSMUSG00000095226 Gm10377 - - 14|14 B predicted gene 10377 protein-coding 546337 Gm5939 EG546337 - X|X B zinc finger CCCH-type containing 18 pseudogene pseudo 404520 Olfr1481-ps1 GA_x5J8B7W6KF8-5515896-5515561 - 19|19 A olfactory receptor 1481, pseudogene 1 pseudo 13555 Mm.18036 NM_007891 ENSMUSG00000027490 E2f1 E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009 - 2 H1|2 76.79 cM E2F transcription factor 1 protein-coding 111314 Hmgn2-rs14 Hmg17-rs14 - - high mobility group nucleosomal binding domain 2, related sequence 14 pseudo 105245723 XR_874511 Gm41129 - - 14 B|14 predicted gene, 41129 ncRNA 102637528 Gm34314 - - 6 G1|6 predicted gene, 34314 pseudo 100038680 Gm1971 - - X E1|X predicted gene 1971 protein-coding 387224 NR_029745 ENSMUSG00000065548 Mir29c Mirn29c|mir-29c|mmu-mir-29c - 1|1 H6 microRNA 29c ncRNA 102634500 XR_382673 Gm32067 - - 13 C2|13 predicted gene, 32067 ncRNA 667681 Trav12n-3 EG667681|Gm8758 - 14 C2|14 T cell receptor alpha variable 12N-3 other 320144 Mm.443162 C030019G06Rik - - 8|8 C1 RIKEN cDNA C030019G06 gene protein-coding 100043162 Gm4274 - - 12|12 B1 predicted gene 4274 pseudo 545013 Mm.422841 NM_001025085 ENSMUSG00000072726 Gm5797 EG545013 - 14 A1|14 predicted gene 5797 protein-coding 217340 Mm.426344 NM_027258 ENSMUSG00000052949 Rnf157 2610036E23Rik|A130073L17Rik|mKIAA1917 - 11|11 E2 ring finger protein 157 protein-coding 245555 Mm.381907 NM_001077354 ENSMUSG00000046449 Nexmif A230051P11|C77370|C77386|KIDLIA|Xpn|mKIAA2022 - X|X D neurite extension and migration factor protein-coding 102637135 XR_382397 Gm34022 - - 13 B1|13 predicted gene, 34022 ncRNA 12116 Mm.329582 NM_016668 ENSMUSG00000074768 Bhmt - - 13|13 C3 betaine-homocysteine methyltransferase protein-coding 100035960 Nilac7 - - 13 6.99 cM nicotine induced locomotor activity 7 unknown 100417129 Gm18412 - - 13|13 B3 predicted gene, 18412 pseudo 100462980 Gm19257 - - 1 C5|1 42.5 cM predicted gene, 19257 pseudo 668325 Gm9107 - - 3 F2.1|3 predicted gene 9107 pseudo 100417155 Gm18428 - - 3|3 E3 crumbs homolog 1 pseudogene pseudo 330301 Mm.128149 NM_177882 ENSMUSG00000051499 Zfp786 A730012O14Rik|Znf786 - 6|6 B2.3 zinc finger protein 786 protein-coding 14431 Mm.7329 NM_010255 ENSMUSG00000020150 Gamt AA571402|Spintz1 - 10 C1|10 39.72 cM guanidinoacetate methyltransferase protein-coding 666483 Gm12470 - - 4|4 B2 predicted gene 12470 pseudo 102637112 Mm.444840 XR_380278 Gm34006 - - 10 B2|10 predicted gene, 34006 ncRNA 102636562 XR_374378 Gm33594 Gm45624 - 2 C1.1|2 predicted gene, 33594 ncRNA 434784 Mm.23468 NM_001018087 ENSMUSG00000057615 Ldoc1 Gm366|Mar7|Mart7|Rtl7|Sirh7 - X|X A6 regulator of NFKB signaling protein-coding 73536 Mm.54275 NR_045930 ENSMUSG00000078600 1700092K14Rik - - 11|11 E2 RIKEN cDNA 1700092K14 gene ncRNA 102638488 XR_001778187 Gm35040 - - 7 D2|7 predicted gene, 35040 ncRNA 102633434 Gm31263 - - 10|10 predicted gene, 31263 ncRNA 100043571 Mm.326869 Gm4524 - - 16 B1|16 predicted gene 4524 unknown 320054 Mm.208000 NR_024328 ENSMUSG00000097403 9230116N13Rik - - 1|1 E4 RIKEN cDNA 9230116N13 gene ncRNA 75698 Mm.45406 NM_029389 ENSMUSG00000041471 Fam35a 3110001K24Rik - 14|14 B family with sequence similarity 35, member A protein-coding 102637503 XR_877438 Gm34295 - - 18 D3|18 predicted gene, 34295 ncRNA 100043394 Gm13954 - - 2|2 E3 predicted gene 13954 protein-coding 108168393 XM_017318026 ENSMUSG00000073532 LOC108168393 - - 18 E3 protein SPT2 homolog protein-coding 100043879 Gm4707 - - 17 E1.3|17 predicted gene 4707 protein-coding 20415 Mm.1431 NM_011367 ENSMUSG00000005202 Shbg ABP - 11 B3|11 42.86 cM sex hormone binding globulin protein-coding 383218 Gm5224 EG383218 - 17|17 A3.3 endosulfine alpha pseudogene pseudo 671653 Gm9538 - - 19|19 A CDC-like kinase 3 pseudogene pseudo 22116 Mm.84502 NM_011651 ENSMUSG00000059891 Tsks Stk22s1|Tssks1 - 7|7 B3 testis-specific serine kinase substrate protein-coding 102637794 XR_386620 Gm34516 - - 19 C1|19 predicted gene, 34516 ncRNA 105311846 LOC105311846 - - - H19/Igf2 enhancer region biological-region 100416311 Gm18029 - - 12|12 A3 ribosomal protein S2 pseudogene pseudo 231128 Mm.286885 NM_001030306 ENSMUSG00000037210 Fam193a - - 5|5 B2 family with sequence similarity 193, member A protein-coding 74947 Mm.488905 NR_033653 ENSMUSG00000092054 Kif4-ps 4930463M05Rik|Kif4b - 12|12 E kinesin family member 4, pseudogene pseudo 546161 Mm.235303 NM_001033794 ENSMUSG00000074059 Fbxw18 C85627 - 9|9 F2 F-box and WD-40 domain protein 18 protein-coding 105244418 XR_879950 Gm40028 - - 11 B3|11 predicted gene, 40028 ncRNA 100043674 XM_006525232 Rbx1-ps Gm9840 - 17 B1|17 ring-box 1, pseudogene pseudo 68487 Mm.248440 NM_197986 ENSMUSG00000057137 Tmem140 1110007F12Rik - 6|6 B1 transmembrane protein 140 protein-coding 102467233 n-TAagc14 n-Ta14 - 3 A2|3 nuclear encoded tRNA alanine 14 (anticodon AGC) tRNA 76690 1500037F05Rik - - 7|7 RIKEN cDNA 1500037F05 gene protein-coding 110120475 LOC110120475 - - - VISTA enhancer mm1516 biological-region 100417135 Gm18417 - - 17|17 D vomeronasal 2, receptor 121 pseudogene pseudo 52137 D7Ertd595e - - 7 6.6 cM DNA segment, Chr 7, ERATO Doi 595, expressed unknown 102637615 XM_006540495 ENSMUSG00000099898 LOC102637615 - - 7 B1 major allergen I polypeptide chain 1-like protein-coding 66083 Mm.261321 NM_001035123 ENSMUSG00000031671 Setd6 0610039J04Rik|3110004G14Rik|AI413388|C76402 - 8|8 D1 SET domain containing 6 protein-coding 101056051 Gm28384 - - 7 B1|7 predicted gene 28384 pseudo 100043904 Mm.396198 NR_045952 Gm4719 - - 17 E5|17 predicted gene 4719 ncRNA 77381 Mm.467680 C030014I23Rik - - 9|9 A5.2 RIKEN cDNA C030014I23 gene ncRNA 105245775 XR_874684 Gm41171 - - 14 D1|14 predicted gene, 41171 ncRNA 100416064 Gm13673 - - 2|2 C3 tubulin, beta 6 pseudogene pseudo 100306957 Mm.260791 NR_028573 ENSMUSG00000092730 Snora24 ACA24 - 3|3 G1 small nucleolar RNA, H/ACA box 24 snoRNA 13860 Mm.235346 NM_007945 ENSMUSG00000015766 Eps8 AW261790 - 6 G1|6 66.78 cM epidermal growth factor receptor pathway substrate 8 protein-coding 53998 D16Jhu27 126H5.T7 - - DNA segment, Chr 16, Johns Hopkins University 27 unknown 11861 Mm.12723 NM_007487 ENSMUSG00000047446 Arl4a AI467555|Arl4 - 12 B1|12 18.06 cM ADP-ribosylation factor-like 4A protein-coding 259068 Mm.377819 NM_147065 ENSMUSG00000045421 Olfr1390 MOR256-2 - 11|11 B1.2 olfactory receptor 1390 protein-coding 12829 Mm.40253 NM_007735 ENSMUSG00000067158 Col4a4 E130010M05Rik|[a]4(IV) - 1|1 C5 collagen, type IV, alpha 4 protein-coding 69977 2810405K22Rik - - 15|15 RIKEN cDNA 2810405K22 gene protein-coding 54120 Mm.97 NM_016867 ENSMUSG00000039131 Gipc2 2200002N01Rik|AU021850|Semcap2 - 3|3 H3 GIPC PDZ domain containing family, member 2 protein-coding 67382 Mm.28721 NM_023336 ENSMUSG00000026918 Brd3 2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3 - 2|2 A3 bromodomain containing 3 protein-coding 67267 Mm.272389 NM_026063 ENSMUSG00000024208 Uqcc2 2900010M23Rik|Cbp6|M19|Mnf1 - 17|17 A3.3 ubiquinol-cytochrome c reductase complex assembly factor 2 protein-coding 100418353 Gm19157 - - 14|14 C1 nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene pseudo 18553 Mm.294007 NM_011048 ENSMUSG00000030513 Pcsk6 C86343|Pace4|SPC4|b2b2830Clo - 7 C|7 35.36 cM proprotein convertase subtilisin/kexin type 6 protein-coding 67035 Mm.46746 NM_025926 ENSMUSG00000028035 Dnajb4 1700029A20Rik|2010306G19Rik|5730460G06Rik - 3|3 H3 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 100504666 Gm13551 - - 2 C1.1|2 33.73 cM 40S ribosomal protein S14-like pseudo 56350 Mm.22085 NM_019718 ENSMUSG00000025035 Arl3 - - 19|19 C3 ADP-ribosylation factor-like 3 protein-coding 102638335 LOC102638335 - - 3 F1 60S ribosomal protein L39-like pseudo 67812 Mm.293321 NM_026390 ENSMUSG00000026353 Ubxn4 1300013G12Rik|Ubxd2|mKIAA0242 - 1|1 E3 UBX domain protein 4 protein-coding 102633001 XR_001779101 Gm30933 - - 9 A4|9 predicted gene, 30933 ncRNA 258412 Mm.115804 NM_146417 ENSMUSG00000066749 Olfr877 MOR161-5 - 9|9 A4 olfactory receptor 877 protein-coding 66204 Mm.311985 NM_025421 ENSMUSG00000008822 Acyp1 1110039O14Rik|AI325944 - 12|12 D1 acylphosphatase 1, erythrocyte (common) type protein-coding 111766 Iapls3-2 - - - intracisternal A particle, lymphocyte specific 3-2 other 105243981 Gm39680 - - 11|11 predicted gene, 39680 ncRNA 114742 Omlr - - - om-linked responder unknown 105243648 XR_878036 Gm39487 - - X A1.1|X predicted gene, 39487 ncRNA 102638422 XR_382607 Gm34993 - - 13 B3|13 predicted gene, 34993 ncRNA 100503648 Gm19815 - - 17|17 59.89 cM predicted gene, 19815 pseudo 75508 Mm.271256 NR_040326 ENSMUSG00000086348 1700017J07Rik - - 2|2 H3 RIKEN cDNA 1700017J07 gene ncRNA 74053 Mm.196692 NM_028736 ENSMUSG00000034813 Grip1 4931400F03Rik|GRIP|eb - 10 D2|10 67.33 cM glutamate receptor interacting protein 1 protein-coding 102632590 Mm.403836 NR_153117 ENSMUSG00000096978 Gm26851 - - X E3|X predicted gene, 26851 ncRNA 666892 Mm.447186 XR_880518 Gm8350 EG666892 - 5|5 E5 predicted gene 8350 unknown 359870 DXMgc35 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 35 unknown 112129 Szs4 Kasz2 - - seizure susceptibility 4 unknown 109279976 LOC109279976 Mm646 - - VISTA enhancer mm646 biological-region 225443 Mm.100304 NM_001033280 ENSMUSG00000071858 Gm94 - - 18|18 B3 predicted gene 94 protein-coding 319488 Mm.446704 A230108f24rik - - 1|1 uncharacterized LOC319488 unknown 102634355 Gm31956 - - 5|5 predicted gene, 31956 ncRNA 52116 D8Ertd317e - - 8 14.17 cM DNA segment, Chr 8, ERATO Doi 317, expressed unknown 100534393 LOC100534393 - - - vomeronasal 2, receptor 43 pseudogene pseudo 101056194 XM_017318756 ENSMUSG00000100939 Gm28998 - - Y A1|Y predicted gene 28998 protein-coding 638950 Gm7255 - - 7 B3|7 MAS-related GPR, member A9 pseudogene pseudo 61615 D9Mit214 - - 9 67.83 cM DNA segment, Chr 9, Massachusetts Institute of Technology 214 unknown 629936 Gm7019 EG629936 - 12|12 F2 baculoviral IAP repeat-containing 3 pseudogene pseudo 442824 Mm.474315 G630030J09Rik - - - RIKEN cDNA G630030J09 gene protein-coding 100036256 Mdmsc5 - - - modifier of muscularity 5 unknown 109853 Lyr2 Nir-1 - - lymphoma resistance 2 protein-coding 547022 Gm6013 EG547022 - 8|8 D1 gem (nuclear organelle) associated protein 8 pseudogene pseudo 102636297 XR_373681 Gm33404 - - 1 H2.3|1 predicted gene, 33404 ncRNA 99805 AU021871 - - - expressed sequence AU021871 unknown 735257 NR_030472 ENSMUSG00000095509 Mir467b Mirn467b|mir-467b - 2 A1|2 microRNA 467b ncRNA 109280009 LOC109280009 Mm103 - - VISTA enhancer mm103 biological-region 100042929 Mm.374311 NM_001242949 ENSMUSG00000096097 H2al1c Gm14477 - X A1.1|X H2A histone family member L1C protein-coding 97812 Mm.479988 C80120 - - - expressed sequence C80120 unknown 100043761 Gm14399 - - 2|2 H4 predicted gene 14399 unknown 77805 Mm.210996 NM_144542 ENSMUSG00000024293 Esco1 A930014I12Rik - 18|18 A1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 108168715 LOC108168715 - - 4 E2 40S ribosomal protein S15a-like pseudo 108374 Xmmv39 Env-39|Xmmv-39 - - xenotropic-MCF leukemia virus 39 other 20352 Mm.275909 NM_013659 ENSMUSG00000030539 Sema4b SemC|Semac|mKIAA1745 - 7|7 D2 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B protein-coding 108168711 XR_001783023 Gm46723 - - 4 D2.3|4 predicted gene, 46723 ncRNA 61306 D3Mit116 - - 3 79.23 cM DNA segment, Chr 3, Massachusetts Institute of Technology 116 unknown 96907 C81001 - - - expressed sequence C81001 protein-coding 102638927 XR_379289 Gm35371 - - 9 A5.1|9 predicted gene, 35371 ncRNA 108168587 XM_017318791 LOC108168587 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 13864 Mm.28989 NM_010150 ENSMUSG00000002393 Nr2f6 AV090102|COUP-TF3|EAR2|Erbal2 - 8 B3.3|8 34.43 cM nuclear receptor subfamily 2, group F, member 6 protein-coding 60994 D2Mit150 - - 2 11.68 cM DNA segment, Chr 2, Massachusetts Institute of Technology 150 unknown 102635163 XR_389966 Gm32571 - - 7 F4|7 predicted gene, 32571 ncRNA 102637686 Gm34432 - - 19 B|19 predicted gene, 34432 pseudo 50492 Mm.26995 NM_022653 ENSMUSG00000004929 Thop1 AI131655|AI327041|EP24.15 - 10 C1|10 39.72 cM thimet oligopeptidase 1 protein-coding 433931 Mm.319881 NM_001081234 ENSMUSG00000029263 Pigg Gpi7 - 5|5 F phosphatidylinositol glycan anchor biosynthesis, class G protein-coding 100417091 Gm18395 - - 8|8 E1 collagen, type III, alpha 1 pseudogene pseudo 19877 Mm.6710 NM_009071 ENSMUSG00000024290 Rock1 1110055K06Rik|Rock-I - 18|18 A1 Rho-associated coiled-coil containing protein kinase 1 protein-coding 62258 D18Mit53 - - 18 28.28 cM DNA segment, Chr 18, Massachusetts Institute of Technology 53 unknown 108167487 Gm15115 - - 7 E3|7 54.85 cM non-histone chromosomal protein HMG-14 pseudogene pseudo 320664 Mm.210195 NM_001033538 ENSMUSG00000074570 Cass4 F730031O20Rik - 2|2 H3 Cas scaffolding protein family member 4 protein-coding 85045 D6Mit51 - - 6 12.82 cM DNA segment, Chr 6, Massachusetts Institute of Technology 51 unknown 102637247 XR_380637 Gm34113 - - 10 C1|10 predicted gene, 34113 ncRNA 105243940 NR_151537 Pard3bos2 Gm12747 - 1 C2|1 31.35 cM par-3 family cell polarity regulator beta, opposite strand 2 ncRNA 100038601 Mm.308684 XR_389132 Gm11691 - - 11 E2|11 predicted gene 11691 ncRNA 109760 Pol15 Pol-15 - - viral polymerase 15 protein-coding 100416839 Gm11797 - - 4|4 A1 Ras suppressor protein 1 pseudogene pseudo 619645 Gm6089 EG619645 - 5|5 B1 RRS1 ribosome biogenesis regulator homolog pseudogene pseudo 171241 Mm.377197 NM_134207 ENSMUSG00000043308 Vmn1r75 V1rg6 - 7|7 A1 vomeronasal 1 receptor 75 protein-coding 76048 5830433D23Rik - - 11|11 RIKEN cDNA 5830433D23 gene protein-coding 64213 Mm.12051 NM_022332 ENSMUSG00000029534 St7 9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7 - 6|6 A2 suppression of tumorigenicity 7 protein-coding 100113395 LOC100113395 - - 8|8 A1.1 ribosomal protein S23-like protein-coding 100036016 Vmmt4 - - - vertebral morphology and mechanical traits 4 unknown 26877 Mm.226435 NM_020283 ENSMUSG00000034780 B3galt1 beta3Gal-T1 - 2|2 C1.3 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 protein-coding 100312470 Mm.480297 NM_001167534 ENSMUSG00000115072 Vmn1r2 Gm11776 - 4 A1|4 vomeronasal 1 receptor 2 protein-coding 665823 Gm7808 EG665823 - 9|9 A3 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene pseudo 328265 Mm.411839 XR_382545 ENSMUSG00000114452 A530001N23Rik - - 13|13 B2 RIKEN cDNA A530001N23 gene ncRNA 118445 Mm.41513 NM_078477 ENSMUSG00000035397 Klf16 AI843742|BTEB4|DRRF - 10|10 C1 Kruppel-like factor 16 protein-coding 102637198 XR_390578 Gm34072 - - 4 B2|4 predicted gene, 34072 ncRNA 70772 Mm.440437 NM_027544 ENSMUSG00000048731 Ggnbp1 0610031G08Rik|mdf - 17|17 A3.3 gametogenetin binding protein 1 protein-coding 78896 Mm.50109 NM_024283 ENSMUSG00000026051 1500015O10Rik Ecrg4 - 1|1 C1.1 RIKEN cDNA 1500015O10 gene protein-coding 22196 Mm.240044 NM_011665 ENSMUSG00000015120 Ube2i 5830467E05Rik|UBC9|Ubce2i|Ubce9 - 17|17 A3.3 ubiquitin-conjugating enzyme E2I protein-coding 218275 Mm.222427 NM_199148 ENSMUSG00000042243 BC051665 - - 13|13 B2 cDNA sequence BC051665 protein-coding 105242991 XR_869783 Gm39047 - - 7 D3|7 predicted gene, 39047 ncRNA 105246178 XR_876309 Gm41512 - - 16 C4|16 predicted gene, 41512 ncRNA 12460 Mm.434411 NM_016892 ENSMUSG00000034108 Ccs Ccsd - 19 A|19 4.11 cM copper chaperone for superoxide dismutase protein-coding 105247128 XR_881260 Gm42283 - - 4 B1|4 predicted gene, 42283 ncRNA 12927 Mm.3758 NM_009954 ENSMUSG00000031955 Bcar1 AI385681|Cas|Crkas - 8|8 E1 breast cancer anti-estrogen resistance 1 protein-coding 69792 Mm.279993 NM_027213 ENSMUSG00000002679 Med6 1500012F11Rik|AU019660|AV213303 - 12|12 D1 mediator complex subunit 6 protein-coding 15191 Mm.292208 NM_008231 ENSMUSG00000004897 Hdgf AI118077|D3Ertd299e - 3 F1|3 38.78 cM hepatoma-derived growth factor protein-coding 102640365 Gm36444 - - 4|4 predicted gene, 36444 ncRNA 21958 Mm.425024 NM_009407 ENSMUSG00000026182 Tnp1 Stp-1|TP1|Tp-1 - 1 C3|1 36.94 cM transition protein 1 protein-coding 414078 Mm.472778 A430018G15Rik - - - RIKEN cDNA A430018G15 gene ncRNA 102640900 XR_379685 ENSMUSG00000100782 Gm28231 - - 9 E3.1|9 predicted gene 28231 ncRNA 68380 Mm.485189 0610042G04Rik - - - RIKEN cDNA 0610042G04 gene unknown 76883 6430500C12Rik - - 8|8 RIKEN cDNA 6430500C12 gene protein-coding 105245759 XR_874641 Gm41158 - - 14 C3|14 predicted gene, 41158 ncRNA 17387 Mm.280175 NM_008608 ENSMUSG00000000957 Mmp14 AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe - 14 C2|14 27.79 cM matrix metallopeptidase 14 (membrane-inserted) protein-coding 100418285 Gm20590 - - 13|13 C1 upstream binding transcription factor, RNA polymerase I pseudogene pseudo 21821 Mm.4653 NM_009376 ENSMUSG00000040040 Ift88 AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris - 14 C3|14 30.1 cM intraflagellar transport 88 protein-coding 672614 Gm9570 - - 14|14 D1 cold shock domain containing E1, RNA binding pseudogene pseudo 665697 Gm7751 EG665697 - 9|9 A2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene pseudo 108168563 XM_017318765 LOC108168563 - - Y D Y-linked testis-specific protein 1-like protein-coding 670864 Gm9506 - - 4|4 E2 predicted gene 9506 pseudo 68263 Mm.301527 NM_024221 ENSMUSG00000021748 Pdhb 2610103L06Rik|AL024199|C81408 - 14|14 A1 pyruvate dehydrogenase (lipoamide) beta protein-coding 382988 Gm5214 EG382988 - 15|15 E2 N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10 pseudogene pseudo 102633140 XR_388890 Gm31042 - - 11 B5|11 predicted gene, 31042 ncRNA 268958 Mm.426026 NM_001013767 ENSMUSG00000058626 Capn11 - - 17|17 B3 calpain 11 protein-coding 102632813 Mm.420137 NR_151610 Gm15486 - - 1 H1|1 68.0 cM predicted gene 15486 ncRNA 102634846 XR_373658 Gm32333 - - 1 H2.1|1 predicted gene, 32333 ncRNA 100217434 NR_028534 ENSMUSG00000096296 Snord88c MBII-180 - 7 B3|7 small nucleolar RNA, C/D box 88C snoRNA 434110 Mm.469895 NM_001105070 ENSMUSG00000095773 Vmn2r38 - - 7|7 A1 vomeronasal 2, receptor 38 protein-coding 105245746 XR_874581 Gm41145 - - 14 C1|14 predicted gene, 41145 ncRNA 102634690 Gm28098 - - Y|Y predicted gene 28098 protein-coding 100040220 Gm9892 - - 8|8 B1.3 eukaryotic translation initiation factor 2, subunit 2 (beta) pseudogene pseudo 268297 Mm.98731 NM_172938 ENSMUSG00000044770 Scml4 9330161D17|mFLJ00197 - 10|10 B2 Scm polycomb group protein like 4 protein-coding 67824 Mm.28451 NM_026393 ENSMUSG00000063445 Nmral1 1110025F24Rik|AI256624 - 16 A1|16 2.46 cM NmrA-like family domain containing 1 protein-coding 105246035 XR_875651 Gm41396 Gm41397 - 15 F1|15 predicted gene, 41396 ncRNA 12279 Mm.29095 NM_013485 ENSMUSG00000022149 C9 - - 15|15 A1 complement component 9 protein-coding 214766 Mm.222952 NM_152944 ENSMUSG00000030981 Mmp21 b2b2458Clo|b2b873Clo - 7|7 F3 matrix metallopeptidase 21 protein-coding 624223 Gm13688 - - 2|2 C3 predicted gene 13688 pseudo 100035626 Bntq10 - - - bone traits QTL 10 unknown 108561 Iapls1-74 - - - intracisternal A particle, lymphocyte specific 1-74 other 667338 Mm.454582 NR_027478 Gm8580 EG667338 - 10|10 C2 ribosomal protein L29 pseudogene pseudo 100416749 Gm18227 - - 9|9 A3 zinc finger protein 867 pseudogene pseudo 75669 Mm.274830 NM_029380 ENSMUSG00000032571 Pik3r4 2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150 - 9 F1|9 56.79 cM phosphoinositide-3-kinase regulatory subunit 4 protein-coding 114159 Taste6 - - - taste-saccharin preference 6 unknown 105244609 Gm40197 - - 11|11 predicted gene, 40197 ncRNA 27749 D2Dcr17 - - - DNA segment, Chr 2, Derry C. Roopenian 17 unknown 57138 Mm.252987 NM_020333 ENSMUSG00000017740 Slc12a5 KCC2|mKIAA1176 - 2|2 H3 solute carrier family 12, member 5 protein-coding 13798 Mm.2657 NM_010133 ENSMUSG00000058665 En1 En-1|Mo-en.1|engrailed-1 - 1 E2.3|1 52.74 cM engrailed 1 protein-coding 432715 Gm5442 EG432715 - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 18174 Mm.234608 NM_008732 ENSMUSG00000023030 Slc11a2 DCT1|DMT1|Nramp2|mk|van - 15 F1|15 56.29 cM solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 protein-coding 108283 Psme2-ps1 - - - protease (prosome, macropain) 28 subunit, beta, b, pseudogene 1 pseudo 667560 Gm8703 EG667560 - 6|6 F3 predicted gene 8703 pseudo 320571 Mm.74465 NM_177195 ENSMUSG00000028457 Atp8b5 4930417M19Rik|Feta - 4|4 A5 ATPase, class I, type 8B, member 5 protein-coding 67235 Mm.432480 NM_023322 ENSMUSG00000029627 Zkscan14 2310046C23Rik|2810437E14Rik|Zfp99|Znf394 - 5|5 G2 zinc finger with KRAB and SCAN domains 14 protein-coding 67707 Mm.393802 NM_026591 ENSMUSG00000019710 Mrpl24 2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670 - 3|3 F1 mitochondrial ribosomal protein L24 protein-coding 74769 Mm.213128 NM_029094 ENSMUSG00000032462 Pik3cb 1110001J02Rik|AI447572|p110beta - 9|9 E3.3 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 108168339 XR_001782184 Gm46595 - - 17 E1.3|17 predicted gene, 46595 ncRNA 67255 Mm.18810 NM_026057 ENSMUSG00000059878 Zfp422 2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22 - 6|6 E3 zinc finger protein 422 protein-coding 13231 Mm.477846 Defa12 Defcr12 - 8|8 defensin, alpha, 12 protein-coding 667794 Mm.302232 NM_001101606 Gm8817 EG667794 - X|X F5 predicted gene 8817 protein-coding 26440 Mm.121265 NM_011965 ENSMUSG00000030751 Psma1 C2|HC2|Pros-30|alpha-type - 7 F1|7 59.32 cM proteasome (prosome, macropain) subunit, alpha type 1 protein-coding 102635794 XR_387306 Gm33042 - - 1 E2.3|1 predicted gene, 33042 ncRNA 105247069 XR_880909 Gm42242 - - 5 B1|5 predicted gene, 42242 ncRNA 666185 Mm.425830 XM_982175 Gm7969 - - 13 B3|13 predicted gene 7969 protein-coding 385419 Gm5394 EG385419 - X|X E2 glycerol-3-phosphate dehydrogenase 1-like pseudogene pseudo 102633617 XR_378695 Gm31401 - - 8 A1.1|8 predicted gene, 31401 ncRNA 77799 Mm.29264 NM_029983 ENSMUSG00000027636 Sla2 A930009E21Rik|AI430952|SLAP-2|SLAP2 - 2|2 H1 Src-like-adaptor 2 protein-coding 102640449 Mm.125380 XR_388723 Tvp23bos Fam18bos|Gm12284 - 11 B3|11 38.84 cM trans-golgi network vesicle protein 23B, opposite strand ncRNA 112163578 AU041561 - - - expressed sequence AU041561 protein-coding 100303647 NR_028434 AF357359 MBII-426 - 12|12 F1 snoRNA AF357359 snoRNA 69155 Mm.15974 NM_175141 ENSMUSG00000044148 1810030O07Rik - - X|X A1.1 RIKEN cDNA 1810030O07 gene protein-coding 76930 Mm.250447 1700016P22Rik - - 1|1 RIKEN cDNA 1700016P22 gene protein-coding 100041776 Gm20886 - - Y|Y predicted gene, 20886 protein-coding 16638 Mm.441781 NM_014194 ENSMUSG00000067599 Klra7 LGL-1|Ly-49G.1|Ly-49G.2|Ly-49G.3|Ly49G.4|Ly49g|Ly49g1|Ly49g2 - 6 F3|6 63.44 cM killer cell lectin-like receptor, subfamily A, member 7 protein-coding 404574 AL118036 - - - expressed sequence AL118036 unknown 666300 Gm8034 EG666300 - 19|19 A thymosin, beta 10 pseudogene pseudo 209416 Mm.148753 NM_173747 ENSMUSG00000031148 Gpkow 4432411B18|DXErtd697e|DXImx41e|T54 - X A1.1|X 3.47 cM G patch domain and KOW motifs protein-coding 100036442 W3q13 - - - weight 3 weeks QTL 13 unknown 665184 Gm7532 EG665184 - 18|18 A1 angel homolog 2 pseudogene pseudo 692133 Igkv12-66 fr12 - 6|6 C1 immunoglobulin kappa chain variable 12-66 pseudo 14461 Mm.491156 NM_008090 ENSMUSG00000015053 Gata2 Gata-2 - 6 D1|6 39.2 cM GATA binding protein 2 protein-coding 665069 Rps2-ps2 EG665069|Gm7474 - 1|1 A1 ribosomal protein S2, pseudogene 2 pseudo 432482 Gm5425 EG432482 - 10|10 C1 predicted gene 5425 pseudo 62435 D18Mit198 - - 18 11.19 cM DNA Segment, Chr 18, Massachusetts Institute of Technology 198 unknown 116531 Tbrs2 Tbrl2|Trl-2 - - tuberculosis resistance 2 unknown 640530 Gm7298 EG640530 - 6|6 F1 murinoglobulin 1 pseudogene pseudo 66939 Mm.34338 NM_025857 ENSMUSG00000037257 Aagab 2310007F21Rik|p34 - 9|9 C alpha- and gamma-adaptin binding protein protein-coding 66074 Mm.241387 NM_025335 ENSMUSG00000012422 Tmem167 0610041E09Rik|5730424F14Rik|AU041184|AW537806|Gm10085|Tmem167a - 13|13 C3 transmembrane protein 167 protein-coding 102637920 XR_391570 Gm34612 - - 7 C|7 predicted gene, 34612 ncRNA 102635949 Gm33157 - - 2|2 predicted gene, 33157 ncRNA 209005 Mm.336054 NM_001085499 ENSMUSG00000079606 Gm595 - - X|X A5 predicted gene 595 protein-coding 76721 Mm.23521 1700085B13Rik - - 7|7 A3 RIKEN cDNA 1700085B13 gene protein-coding 76302 Mm.310642 NM_001024622 ENSMUSG00000071533 Pcnp 1110018D06Rik|AI647035 - 16|16 C1.1 PEST proteolytic signal containing nuclear protein protein-coding 103593 AA589579 - - - expressed sequence AA589579 unknown 52177 Mm.240310 D4Ertd151e - - - DNA segment, Chr 4, ERATO Doi 151, expressed unknown 218397 Mm.259653 NM_145452 ENSMUSG00000021549 Rasa1 Gap|RasGAP|Rasa - 13 C3|13 45.05 cM RAS p21 protein activator 1 protein-coding 103983 Imp1 - - - imprintor 1 protein-coding 105246163 XR_876257 Gm41497 - - 16 C4|16 predicted gene, 41497 ncRNA 381104 Mm.392206 NM_001290337 ENSMUSG00000096549 Prickle4 Gm939 - 17|17 C prickle planar cell polarity protein 4 protein-coding 18124 Mm.247261 NM_015743 ENSMUSG00000028341 Nr4a3 AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC - 4|4 B1 nuclear receptor subfamily 4, group A, member 3 protein-coding 170802 Idd5.2 Idd5b - - insulin dependent diabetes susceptibility 5.2 unknown 102636654 XR_378433 Gm33659 - - 7 F1|7 predicted gene, 33659 ncRNA 71956 Mm.22985 NM_028019 ENSMUSG00000020707 Rnf135 0610037N03Rik|2410006N06Rik - 11 B5|11 47.59 cM ring finger protein 135 protein-coding 74143 Mm.274285 NM_133752 ENSMUSG00000038084 Opa1 1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567 - 16 B2|16 20.65 cM OPA1, mitochondrial dynamin like GTPase protein-coding 100418086 Gm18992 - - 17|17 E1.1 hypoxanthine guanine phosphoribosyl transferase pseudogene pseudo 71799 Mm.277413 NM_133735 ENSMUSG00000029624 Ptcd1 1110069M14Rik - 5|5 G2 pentatricopeptide repeat domain 1 protein-coding 665886 Gm7838 EG665886 - 6|6 D3 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene pseudo 105972 AU021889 - - - expressed sequence AU021889 unknown 98661 Mm.380514 AW061096 - - - expressed sequence AW061096 unknown 71520 Mm.202760 NM_027817 ENSMUSG00000004837 Grap 8430435N19Rik|BB233594 - 11|11 B2 GRB2-related adaptor protein protein-coding 102633171 Mm.209652 XR_382092 Gm31066 - - 13 A1|13 predicted gene, 31066 ncRNA 105246957 XR_880536 Gm42150 - - 5 F|5 predicted gene, 42150 ncRNA 171209 Mm.299636 NM_183000 ENSMUSG00000038276 Asic3 AW742291|Accn3|DRASIC|SLNAC1|TNAC1 - 5|5 A3 acid-sensing (proton-gated) ion channel 3 protein-coding 20219 Mm.330510 NM_011318 ENSMUSG00000026542 Apcs Sap - 1 H3|1 80.33 cM serum amyloid P-component protein-coding 242574 Mm.34251 NM_001331179 ENSMUSG00000046133 C130073F10Rik - - 4|4 C6 RIKEN cDNA C130073F10 gene protein-coding 668525 Mm.278091 XR_872534 Gm9222 BDR-1|CA748277|EG668383|EG668525|Gm29722 - 12|12 A1.2 predicted gene 9222 unknown 21455 Tcp1-ps1 Cct1-1P - 4|4 C1 t-complex protein 1, pseudogene 1 pseudo 106498 AA517753 - - - expressed sequence AA517753 unknown 14079 Mm.28398 NM_007980 ENSMUSG00000023057 Fabp2 Fabpi|I-FABP - 3 G1|3 53.74 cM fatty acid binding protein 2, intestinal protein-coding 100499530 NR_037313 ENSMUSG00000084559 Mir1906-2 mmu-mir-1906-2 - X C1|X 39.95 cM microRNA 1906-2 ncRNA 241638 Mm.440130 NM_197945 ENSMUSG00000037703 Lzts3 Prosapip1 - 2|2 F1 leucine zipper, putative tumor suppressor family member 3 protein-coding 100039029 XM_006535594 LOC100039029 - - 1|8 component of Sp100-rs-like protein-coding 100040865 Gm3010 - - 5 B3|5 calmodulin 2 pseudogene pseudo 258967 Mm.358935 NM_146965 ENSMUSG00000075078 Olfr1250 MOR231-7 - 2|2 E1 olfactory receptor 1250 protein-coding 100416977 Gm7171 EG636052 - 5|5 F vomeronasal 2, receptor 84 pseudogene pseudo 85125 D1Mit1009 D5Mit109 - 1 36.83 cM DNA segment, Chr 1, Massachusetts Institute of Technology 1009 unknown 83453 Mm.157697 NM_031258 ENSMUSG00000031283 Chrdl1 CHL|CHL1|Nrln1|VOPT - X|X F2 chordin-like 1 protein-coding 100415786 Mm.437995 Gm13783 - - - predicted gene 13783 protein-coding 100042304 XR_874209 Gm38418 Gm10338 - 14|14 A1 predicted gene, 38418 protein-coding 100043663 Gm4577 - - 17 B1|17 predicted gene 4577 protein-coding 102636192 XR_389480 Gm33327 - - 5 E5|5 predicted gene, 33327 ncRNA 100417397 Gm14099 - - 2|2 F2 ubiquitin-conjugating enzyme E2S pseudogene pseudo 62327 D6Mit164 - - 6 35.94 cM DNA segment, Chr 6, Massachusetts Institute of Technology 164 unknown 100035027 Axtq1 - - - anxiety QTL 1 unknown 102632027 XR_387285 Gm30204 - - 1 D|1 predicted gene, 30204 ncRNA 75903 Mm.444303 4930579M01Rik - - 8|8 RIKEN cDNA 4930579M01 gene protein-coding 74195 Mm.29719 NM_028811 ENSMUSG00000022031 Elp3 2610507P14Rik|KAT9 - 14|14 D1 elongator acetyltransferase complex subunit 3 protein-coding 105242794 XR_869492 Gm38908 - - 6 G1|6 predicted gene, 38908 ncRNA 108515 Ms13-34 Ms13-Hf18 - - minisatellite 13-34 detected by M13 phage probe other 16062 Igh-VJ606 - - - immunoglobulin heavy chain (J606 family) other 108168447 Gm46678 - - X C2|X predicted gene, 46678 pseudo 100417373 Gm18572 Gm18570 - 14|14 A1 ubiquitin specific peptidase 7 pseudogene pseudo 102638556 XR_373703 Gm35090 - - 1 H3|1 predicted gene, 35090 ncRNA 20870 Dyrk1c AIK2|Stk12|YRK - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1c protein-coding 257674 GA_x5J8B7U259D-794-444 - - - olfactory receptor GA_x5J8B7U259D-794-444 protein-coding 97758 C87312 - - - expressed sequence C87312 protein-coding 102636592 XR_384916 Gm33611 - - 16 C1.3|16 predicted gene, 33611 ncRNA 171228 Mm.377186 NM_134194 ENSMUSG00000043537 Vmn1r225 V1re5 - 17|17 A3.2 vomeronasal 1 receptor 225 protein-coding 79459 Mm.392781 NM_001277340 ENSMUSG00000063129 Aldoart2 4933425L11Rik|Aldo1-ps1|Aldoa-ps1 - 12|12 C1 aldolase 1 A, retrogene 2 protein-coding 102637800 XM_006528371 Gm34521 - - X D|X predicted gene, 34521 protein-coding 108169124 XR_001785074 Gm20548 - - 5 E4|5 48.96 cM predicted gene 20548 ncRNA 100503709 Gm15126 - - X F2|X 68.46 cM predicted gene 15126 pseudo 79044 Mm.328851 NM_023260 ENSMUSG00000038880 Mrps34 0610007F04Rik|5330430D13Rik|AV001970|Tce2 - 17|17 A3.3 mitochondrial ribosomal protein S34 protein-coding 22698 Mm.127646 NM_011758 ENSMUSG00000037001 Zfp39 CTfin33|Zfp-39 - 11|11 B1.3 zinc finger protein 39 protein-coding 360119 D17Jcs122 - - - DNA segment, Chr 17, John C. Schimenti 122 unknown 319733 A530045O15Rik - - 2|2 RIKEN cDNA A530045O15 gene protein-coding 108167851 XR_001780098 Gm46253 - - 11 B5|11 predicted gene, 46253 ncRNA 403175 Mm.83086 NM_207278 ENSMUSG00000047819 Tigd4 C130063O11Rik|Gm418 - 3|3 F1 tigger transposable element derived 4 protein-coding 111906 Iap5rb4 - - - intracisternal A-type particle, U5 region, SINE repeat b-4 other 12236 Mm.29133 NM_009773 ENSMUSG00000040084 Bub1b AU045529|BUBR1 - 2|2 E5 BUB1B, mitotic checkpoint serine/threonine kinase protein-coding 110120375 LOC110120375 - - - VISTA enhancer mm515 biological-region 627983 Gm6819 EG627983 - 7|7 B3 predicted gene 6819 pseudo 53810 D7Cwr3P D7Cwr3|D7Tm3a - - DNA segment, Chr 7, Case Western Reserve 3P unknown 668630 Gm9278 EG668630 - 7|7 B3 predicted gene 9278 pseudo 68376 Mm.261564 0610040A22Rik - - 13|13 RIKEN cDNA 0610040A22 gene protein-coding 97737 C81435 - - - expressed sequence C81435 unknown 105245105 XR_871450 LOC105245105 - - 10 A1 uncharacterized LOC105245105 ncRNA 62970 D15Mit231 - - 15 21.96 cM DNA Segment, Chr 15, Massachusetts Institute of Technology 231 unknown 102632138 Gm30291 - - 12|12 predicted gene, 30291 protein-coding 100418330 Gm19142 - - 16|16 B4 synaptotagmin binding, cytoplasmic RNA interacting protein pseudogene pseudo 111556123 LOC111556123 - - - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 pseudogene pseudo 105246285 XR_876847 Gm41589 - - 17 C|17 predicted gene, 41589 ncRNA 102633983 XR_381320 Gm31676 - - 12 A1.3|12 predicted gene, 31676 ncRNA 641130 Gm20769 - - 13|13 predicted gene, 20769 pseudo 218888 Gm4816 Timm23p - 1 H3|1 translocase of inner mitochondrial membrane 23 homolog pseudogene pseudo 12314 Mm.329243 NM_007589 ENSMUSG00000036438 Calm2 1500001E21Rik|AL024017|Cam2|CamC - 17|17 E4 calmodulin 2 protein-coding 56229 Mm.32067 NM_019576 ENSMUSG00000031480 Thsd1 4833423O18Rik|Tmtsp - 8|8 A2 thrombospondin, type I, domain 1 protein-coding 67781 Mm.227258 NM_026374 ENSMUSG00000001016 Ilf2 6230405A16Rik|TEG-267|Tex261|Tex267 - 3|3 F1 interleukin enhancer binding factor 2 protein-coding 100036054 Hbnr2 Hpnr2 - - Heligmosomoides bakeri nematode resistance 2 unknown 229699 Mm.38384 NM_146136 ENSMUSG00000027896 Slc16a4 AW146050|MCT 5 - 3|3 F2.3 solute carrier family 16 (monocarboxylic acid transporters), member 4 protein-coding 667113 Gm8464 EG667113|EyeLinc7 - X F3|X actin, beta pseudogene pseudo 69482 Mm.29200 NM_027091 ENSMUSG00000026999 Nup35 2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44 - 2|2 C3 nucleoporin 35 protein-coding 21192 T(4;9)45H T45H - - reciprocal translocation, Chr 4 and 9, Harwell 45 other 11745 Mm.7214 NM_013470 ENSMUSG00000029484 Anxa3 Anx3 - 5 E3|5 47.29 cM annexin A3 protein-coding 268721 Mm.275082 NM_027996 ENSMUSG00000021819 Zswim8 2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913 - 14|14 A3 zinc finger SWIM-type containing 8 protein-coding 24015 Mm.5831 NM_015751 ENSMUSG00000058355 Abce1 C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli - 8|8 C1 ATP-binding cassette, sub-family E (OABP), member 1 protein-coding 100039948 Mm.477362 NM_001099318 ENSMUSG00000079637 Rhox2c Rhox2.3|Rhox2b - X|X A3.3 reproductive homeobox 2C protein-coding 102633575 Mm.473950 XR_388075 Gm31367 - - 8 E1|8 predicted gene, 31367 ncRNA 93704 Mm.247203 NM_033579 ENSMUSG00000104063 Pcdhgb7 - - 18|18 B3 protocadherin gamma subfamily B, 7 protein-coding 62596 D13Mit125 - - 13 41.95 cM DNA segment, Chr 13, Massachusetts Institute of Technology 125 unknown 102634793 XR_386679 Gm32294 - - 19 C2|19 predicted gene, 32294 ncRNA 102636005 XR_377795 Gm33200 - - 6 C3|6 predicted gene, 33200 ncRNA 69812 Mm.18422 NR_026688 ENSMUSG00000085042 Abhd11os 2010001M06Rik|AI462243|Wbscr26|Wnscr26 - 5|5 G2 abhydrolase domain containing 11, opposite strand ncRNA 12889 Mm.5195 NM_007756 ENSMUSG00000033615 Cplx1 921-S - 5|5 F complexin 1 protein-coding 67342 Mm.245800 NM_026098 ENSMUSG00000020164 Kcnmb4os1 1700058G18Rik - 10|10 D2 potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1 ncRNA 19274 Mm.311809 NM_008984 ENSMUSG00000033278 Ptprm RPTPmu|mKIAA4044 - 17 E1.1|17 37.88 cM protein tyrosine phosphatase, receptor type, M protein-coding 16259 In(17)2t In2 - - inversion, Chr 17 other 78599 A930030B21Rik - - - RIKEN cDNA A930030B21 gene protein-coding 19639 Rb(X.12)7H Rb7H - - Robertsonian translocation, Chr X and 12, Harwell 7 other 621710 Gm6254 EG621710 - 14 E5|14 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 319675 Mm.218317 NM_176976 ENSMUSG00000046111 Cep295 5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731 - 9|9 A2 centrosomal protein 295 protein-coding 66087 Mm.275989 NM_175101 ENSMUSG00000030286 Emc3 0610039A15Rik|AI225901|AW260416|Pob|Tmem111 - 6|6 E3 ER membrane protein complex subunit 3 protein-coding 230700 Mm.259227 NM_172699 ENSMUSG00000032998 Foxj3 C330039G02Rik|Fhd6 - 4|4 D2.1 forkhead box J3 protein-coding 100416299 Gm14518 - - X|X A1.1 ribosomal protein L18 pseudogene pseudo 666045 Gm7905 EG666045 - X|X F1 predicted pseudogene 7905 pseudo 53973 Mm.379071 NM_017396 ENSMUSG00000075551 Cyp3a41a Cyp3a41 - 5 G2|5 85.17 cM cytochrome P450, family 3, subfamily a, polypeptide 41A protein-coding 105243878 XR_872276 Gm12031 - - 11 A3.1|11 12.9 cM predicted gene 12031 ncRNA 108169141 XR_001785239 Gm46959 - - 6 B3|6 predicted gene, 46959 ncRNA 117198 Mm.33764 NM_028582 ENSMUSG00000023150 Ivns1abp 1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850 - 1|1 G1 influenza virus NS1A binding protein protein-coding 20754 Mm.140151 NM_009265 ENSMUSG00000048455 Sprr1b - - 3 F1|3 40.14 cM small proline-rich protein 1B protein-coding 329639 Mm.131245 NR_038079 ENSMUSG00000102785 Gm2447 100039832|A530017F20 - 3|3 C predicted gene 2447 ncRNA 80719 Mm.160384 NM_030691 ENSMUSG00000035004 Igsf6 - - 7|7 F2 immunoglobulin superfamily, member 6 protein-coding 108168209 XR_001781488 Gm46492 - - 14 A1|14 predicted gene, 46492 ncRNA 100418314 Gm14914 - - X|X E1 heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene pseudo 100040304 Gm16407 EG627990 - X|X A7.2 syndecan 1 pseudogene pseudo 192188 Mm.279611 NM_138673 ENSMUSG00000035459 Stab2 FEEL-2|FELL|MFEEL-2|STAB-2 - 10|10 C1 stabilin 2 protein-coding 102633939 XR_001781901 Gm15518 - - 16 B5|16 31.08 cM predicted gene 15518 ncRNA 100503470 Mm.428009 XR_105783 Gm16619 - - 16 B5|16 31.12 cM predicted gene, 16619 unknown 280411 Mm.482147 NM_001163170 ENSMUSG00000049288 Lix1l D130027M04Rik - 3|3 F2.1 Lix1-like protein-coding 12452 Mm.3527 NM_007635 ENSMUSG00000029385 Ccng2 - - 5|5 E2 cyclin G2 protein-coding 66892 Mm.32889 NM_025829 ENSMUSG00000093661 Eif4e3 1300018P11Rik|AI451927|eIF4E-3 - 6|6 D3 eukaryotic translation initiation factor 4E member 3 protein-coding 13170 Mm.24222 NM_016974 ENSMUSG00000059824 Dbp - - 7 B3|7 29.45 cM D site albumin promoter binding protein protein-coding 111761 Iapls2-4 - - - intracisternal A particle, lymphocyte specific 2-4 other 100417383 Gm18582 - - 15|15 A2 BRCA1 associated RING domain 1 pseudogene pseudo 20464 Mm.4774 NM_011376 ENSMUSG00000019913 Sim1 bHLHe14|mSIM1 - 10 B3|10 24.87 cM single-minded family bHLH transcription factor 1 protein-coding 68280 Mm.291032 XM_017320492 Gm12666 - - 4|4 C5 predicted gene 12666 protein-coding 105185 Mm.242865 D130076G13Rik AI465335 - - RIKEN cDNA D130076G13 gene protein-coding 432982 Mm.234608 NM_001034883 ENSMUSG00000087444 Gm5475 EG432982 - 15 F1|15 predicted gene 5475 ncRNA 623078 Mm.453024 XR_383051 Gm8108 666442 - 14|14 A1 predicted gene 8108 unknown 18359 Mm.300072 NM_011002 ENSMUSG00000070374 Olfr59 IH3|MOR133-3P - 11|11 B5 olfactory receptor 59 protein-coding 626828 Mm.480268 NM_001166729 ENSMUSG00000115404 Vmn1r31 EG626828|Gm6709 - 6|6 B3 vomeronasal 1 receptor 31 protein-coding 58227 Mm.266466 NM_021416 ENSMUSG00000015879 Fam184b 9630031F12Rik|AB041544 - 5|5 B3 family with sequence similarity 184, member B protein-coding 102637599 XR_388945 Gm34366 - - 11 C|11 predicted gene, 34366 ncRNA 97863 Mm.275934 NM_001033192 ENSMUSG00000069237 Fam8a1 C78339 - 13|13 A5 family with sequence similarity 8, member A1 protein-coding 100035761 Loca1 - - - locomotor activity 1 unknown 52169 D1Ertd182e - - 1 65.2 cM DNA segment, Chr 1, ERATO Doi 182, expressed unknown 100416767 Gm18239 - - X|X C3 FGFR1 oncogene partner 2 pseudogene pseudo 100416361 Gm18069 - - 17|17 D heat shock protein 8 pseudogene pseudo 110005 Gas10 Gas-10 - - growth arrest specific 10 protein-coding 70190 Mm.486791 XM_017318984 2610036A22Rik Ayu18-91|Gt(pU18)91Imeg - - RIKEN cDNA 2610036A22 gene protein-coding 170458 Mm.379306 NM_130453 ENSMUSG00000024784 Gpha2 GPA2|zsig51 - 19|19 A glycoprotein hormone alpha 2 protein-coding 12583 Mm.241056 NM_033037 ENSMUSG00000033022 Cdo1 1300002L19Rik|Cdo|D18Ucla3 - 18 C|18 24.75 cM cysteine dioxygenase 1, cytosolic protein-coding 13836 Mm.2581 NM_010139 ENSMUSG00000006445 Epha2 AW545284|Eck|Myk2|Sek-2|Sek2 - 4 D3|4 73.67 cM Eph receptor A2 protein-coding 100035849 W3q17 - - - weight 3 weeks QTL 17 unknown 666835 Gm8318 EG666835 - 15|15 A2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105242938 XR_882071 Gm39010 - - 7 B3|7 predicted gene, 39010 ncRNA 102639789 XR_382628 Gm36019 - - 13 C1|13 predicted gene, 36019 ncRNA 72665 Mm.255825 XR_875706 2810039B14Rik - - 15|15 D3 RIKEN cDNA 2810039B14 gene unknown 108167589 XR_001778766 Gm46074 - - 8 A2|8 predicted gene, 46074 ncRNA 73976 Mm.389073 XR_868271 ENSMUSG00000105688 4930437M23Rik Gm34082 - 5 A1|5 RIKEN cDNA 4930437M23 gene ncRNA 102640438 XR_376607 Gm36499 - - 4 D2.1|4 predicted gene, 36499 ncRNA 111660 Tcra-V - - - T cell receptor alpha, variable region other 330228 Mm.255752 NM_177880 ENSMUSG00000029586 Spdye4b 4933411G11Rik - 5|5 G2 speedy/RINGO cell cycle regulator family, member E4B protein-coding 259085 Mm.377830 NM_147081 ENSMUSG00000045584 Olfr610 MOR9-2 - 7|7 E3 olfactory receptor 610 protein-coding 102639538 XR_389218 Gm35829 - - 11 E2|11 predicted gene, 35829 ncRNA 621614 Gm6244 EG621614 - 1 C5|1 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 60806 D4Mit31 - - 4 50.04 cM DNA segment, Chr 4, Massachusetts Institute of Technology 31 unknown 329506 Mm.249405 NM_212450 ENSMUSG00000033411 Ctdspl2 D2Ertd485e|SCP4 - 2 E5|2 60.46 cM CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 protein-coding 21781 Mm.925 NM_009361 ENSMUSG00000038482 Tfdp1 Dp1|Drtf1 - 8|8 A1.1 transcription factor Dp 1 protein-coding 102640059 XR_383335 LOC102640059 - - 14 B uncharacterized LOC102640059 ncRNA 62174 D14Mit91 - - 14 40.53 cM DNA segment, Chr 14, Massachusetts Institute of Technology 91 unknown 102638961 XR_389797 Gm35395 - - 5 B1|5 predicted gene, 35395 ncRNA 258204 Olfr1267-ps1 MOR228-1 - 2|2 E1 olfactory receptor 1267, pseudogene 1 pseudo 116819 Angle4 Angle-4 - 7 42.14 cM angle of entrainment 4 unknown 330917 Mm.488283 NR_131058 Gm27162 A430016B06 - 9|9 A4 predicted gene 27162 ncRNA 100503319 Gm17281 - - 2|2 50.6 cM predicted gene, 17281 ncRNA 104154 Tsv - - - variable short tail unknown 102466763 NR_105878 ENSMUSG00000098811 Mir6913 Gm27788|mmu-mir-6913 - 10|10 C1 microRNA 6913 ncRNA 60855 D5Mit93 - - 5 50.45 cM DNA segment, Chr 5, Massachusetts Institute of Technology 93 unknown 80748 Mm.290116 NM_030561 ENSMUSG00000052712 BC004004 2400006G15Rik - 17|17 A3.3 cDNA sequence BC004004 protein-coding 105246494 XR_877567 Gm41779 - - 18 E3|18 predicted gene, 41779 ncRNA 102638947 Mm.109295 XR_382618 ENSMUSG00000097522 Gm26844 - - 13 B3|13 predicted gene, 26844 ncRNA 102636736 XM_006523119 Gm33726 - - 16 C3.3|16 predicted gene, 33726 protein-coding 102636378 Mm.330624 Macrod2os1 Gm14077 - 2|2 69.95 cM MACRO domain containing 2, opposite strand 1 ncRNA 383992 Rps11-ps3 Gm11828 - 4|4 A1 ribosomal protein S11, pseudogene 3 pseudo 100418328 Gm16215 - - 3|3 H2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 pseudogene pseudo 101756 AU019752 - - - expressed sequence AU019752 protein-coding 239673 Mm.461267 NM_177717 ENSMUSG00000048699 Krt90 4732456N10Rik|Ket90 - 15|15 F2 keratin 90 protein-coding 15475 hs - - - head spot unknown 236266 Mm.246967 NM_145223 ENSMUSG00000063810 Alms1 bbb - 6|6 C3 ALMS1, centrosome and basal body associated protein-coding 492918 Pcd8ts1 - - 5 55.72 cM p-glycoprotein positive CD8 T cell subset 1 unknown 381229 Mm.300553 NM_001163267 ENSMUSG00000046585 Cfap58 Ccdc147|Gm969 - 19|19 D1 cilia and flagella associated protein 58 protein-coding 100041697 XR_141398 Gm14719 - - X A5|X predicted gene 14719 pseudo 381223 Mm.136844 NR_045343 E030044B06Rik E030007J07Rik|Gm1618 - 19|19 C3 RIKEN cDNA E030044B06 gene ncRNA 105246192 XR_876406 Gm41525 - - 17 A1|17 predicted gene, 41525 ncRNA 100035792 Vtbt10 - - 10 61.58 cM vertebral trabecular bone trait 10 unknown 28078 Mm.155058 NM_023746 ENSMUSG00000017064 Prl5a1 1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl - 13 A3.1|13 12.69 cM prolactin family 5, subfamily a, member 1 protein-coding 668725 Mm.436563 NM_001177566 ENSMUSG00000074111 Mrgpra9 EG668725|MrgA9 - 7|7 B3 MAS-related GPR, member A9 protein-coding 258135 Mm.377355 NM_001011845 ENSMUSG00000073952 Olfr597 GA_x5J8B7TU1BB-380-666|MOR23-2 - 7|7 E3 olfactory receptor 597 protein-coding 106717 AU021760 - - - expressed sequence AU021760 protein-coding 100036173 Imct2 - - - immune cell traits 2 unknown 13822 Mm.306026 NM_013511 ENSMUSG00000019978 Epb41l2 4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2 - 10 A4|10 12.26 cM erythrocyte membrane protein band 4.1 like 2 protein-coding 78457 Mm.76932 NR_045320 ENSMUSG00000099988 1700054A03Rik - - 19|19 D2 RIKEN cDNA 1700054A03 gene ncRNA 102975 Mm.375584 AU015621 - - - expressed sequence AU015621 protein-coding 109779 H22 H-22 - - histocompatibility 22 protein-coding 78056 Mm.271285 NR_046010 ENSMUSG00000112730 4930567K20Rik 1700038H22Rik - 10|10 A1 RIKEN cDNA 4930567K20 gene ncRNA 223272 Mm.383176 NM_145467 ENSMUSG00000032925 Itgbl1 B930011D01Rik - 14|14 E5 integrin, beta-like 1 protein-coding 108829 Mm.23846 NM_207221 ENSMUSG00000037876 Jmjd1c 5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8 - 10|10 B5.1 jumonji domain containing 1C protein-coding 102640442 XR_878707 Gm36502 - - 5 F|5 predicted gene, 36502 ncRNA 100041141 Gm20861 - - Y|Y predicted gene, 20861 protein-coding 665399 Gm7621 EG665399 - 14|14 B predicted gene 7621 pseudo 100503498 Mm.187358 NR_045750 ENSMUSG00000097534 Gm16675 - - 8 B1.1|8 26.42 cM predicted gene, 16675 ncRNA 328829 Mm.466999 NM_177824 ENSMUSG00000073386 9830107B12Rik Trem5 - 17|17 C RIKEN cDNA 9830107B12 gene protein-coding 723900 NR_029876 ENSMUSG00000065616 Mir375 Mirn375|mir-375|mmu-mir-375 - 1|1 C4 microRNA 375 ncRNA 100503190 Mm.170588 NR_155494 Gm19585 - - 17 C|17 27.26 cM predicted gene, 19585 ncRNA 780832 Ighv5-21 - - 12|12 F1 immunoglobulin heavy variable V5-21 pseudo 52308 D4Ertd361e - - - DNA segment, Chr 4, ERATO Doi 361, expressed unknown 100042239 Gm3742 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 105247051 Gm42227 - - 5|5 predicted gene, 42227 ncRNA 21410 Mm.7226 NM_009330 ENSMUSG00000020679 Hnf1b HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1 - 11 C|11 51.23 cM HNF1 homeobox B protein-coding 102637532 LOC102637532 - - 11 D cytochrome b-c1 complex subunit 10 pseudogene pseudo 102466632 NR_105772 ENSMUSG00000098829 Mir6354 Gm27282|mmu-mir-6354 - 1|1 H2.3 microRNA 6354 ncRNA 100418234 Gm19089 - - 5|5 G2 cytochrome P450, family 3, subfamily a, polypeptide 44 pseudogene pseudo 114352 Skl4 - - 10 54.72 cM skeletal size (tail length) 4 unknown 244895 Mm.490331 NM_172924 ENSMUSG00000074305 Peak1 1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002 - 9|9 B pseudopodium-enriched atypical kinase 1 protein-coding 102465222 NR_105838 ENSMUSG00000099264 Mir6411 Gm27767|mmu-mir-6411 - 10|10 D1 microRNA 6411 ncRNA 30939 Mm.6856 NM_013917 ENSMUSG00000020415 Pttg1 AW555095|C87862|Pttg|Pttg3 - 11|11 B1.1 pituitary tumor-transforming gene 1 protein-coding 209318 Mm.30195 NM_145370 ENSMUSG00000025156 Gps1 Cops1|Csn1|R75577|Sgn1 - 11|11 E2 G protein pathway suppressor 1 protein-coding 73882 4930425P05Rik - - 14|14 RIKEN cDNA 4930425P05 gene protein-coding 320888 E030024I16Rik - - 3|3 RIKEN cDNA E030024I16 gene protein-coding 629419 Gm6973 EG629419 - X|X C1 eukaryotic translation initiation factor 4H pseudogene pseudo 110120435 LOC110120435 - - - VISTA enhancer mm1454 biological-region 62791 D15Mit196 - - 15 25.7 cM DNA segment, Chr 15, Massachusetts Institute of Technology 196 unknown 75570 Mm.442409 NM_029342 ENSMUSG00000026162 Nhej1 1700029B21Rik|XLF|cernunnos - 1|1 C4 nonhomologous end-joining factor 1 protein-coding 627166 NR_002686 Gm15801 - - 19 C3|19 protein tyrosine phosphatase 4a1 pseudogene pseudo 102639183 Gm35553 - - 4|4 predicted gene, 35553 ncRNA 381809 Mm.333372 NM_001004159 ENSMUSG00000067767 Clec4b2 Aplra1|F830043G12Rik|mDCAR1 - 6|6 F2 C-type lectin domain family 4, member b2 protein-coding 77729 6720451E02Rik - - 3|3 RIKEN cDNA 6720451E02 gene protein-coding 100316807 NR_035430 ENSMUSG00000080645 Mir1198 Mirn1198|mmu-mir-1198 - X A1.1|X 3.52 cM microRNA 1198 ncRNA 73866 Mm.84527 NM_028671 ENSMUSG00000036013 Fam122c 4930432H15Rik|4930527G05Rik - X|X A5 family with sequence similarity 122, member C protein-coding 259151 Mm.377866 NM_001011532 ENSMUSG00000075205 Olfr1037 MOR171-52|MOR256-34P - 2|2 D olfactory receptor 1037 protein-coding 108167733 XR_001779480 LOC108167733 - - 1 G1 uncharacterized LOC108167733 ncRNA 100416919 Gm18321 - - 14|14 E4 formin binding protein 1 pseudogene pseudo 105246653 XR_878348 Gm41911 - - 1 C5|1 predicted gene, 41911 ncRNA 112289 Exq1 - - 10 67.89 cM exploratory and excitability QTL 1 unknown 72826 Mm.246174 NM_176836 ENSMUSG00000037808 Fam76b 2810485I05Rik|C78303 - 9|9 A1 family with sequence similarity 76, member B protein-coding 18693 Mm.259464 NM_008837 ENSMUSG00000068206 Pick1 Prkcabp - 15|15 E1 protein interacting with C kinase 1 protein-coding 52779 D16Wsu194e - - - DNA segment, Chr 16, Wayne State University 194, expressed unknown 77059 Mm.251476 NR_040298 4931408D14Rik - - 19|19 C2 RIKEN cDNA 4931408D14 gene ncRNA 102636862 Gm33815 - - Y|Y predicted gene, 33815 ncRNA 62936 D11Mit314 - - 11 31.05 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 314 unknown 110483 Tcra-V4.8 - - - T cell receptor alpha, variable 4.8 other 93726 Mm.153688 NM_053113 ENSMUSG00000047222 Rnase2a Ear11 - 14|14 C1 ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin) protein-coding 53148 236M16Sp6 - - - DNA segment, 236M16Sp6 unknown 23797 Mm.235194 NM_011785 ENSMUSG00000019699 Akt3 AI851531|D930002M15Rik|Nmf350 - 1|1 H4 thymoma viral proto-oncogene 3 protein-coding 675558 Gm14531 - - X|X A1.3 phosphatase, orphan 1 pseudogene pseudo 667484 Gm15711 EG667484 - 16 B4|16 RAN guanine nucleotide release factor pseudogene pseudo 105245990 Gm20420 - - 15|15 37.7 cM predicted gene 20420 ncRNA 121022 Mm.217354 NM_080456 ENSMUSG00000039680 Mrps6 AW046321 - 16|16 C4 mitochondrial ribosomal protein S6 protein-coding 100417316 Gm18527 - - 18|18 D3 crumbs homolog 1 pseudogene pseudo 735275 NR_030757 ENSMUSG00000076312 Mir499 Mirn499|mir-499|mmu-mir-499 - 2 H1|2 microRNA 499 ncRNA 102465148 NR_105747 ENSMUSG00000098648 Mir6239 Gm28025|mmu-mir-6239 - 14|14 E4 microRNA 6239 ncRNA 100416136 Gm17934 - - 3|3 A1 SNF related kinase pseudogene pseudo 60720 D9Mit60 - - 9 4.95 cM DNA segment, Chr 9, Massachusetts Institute of Technology 60 unknown 85214 D17Mit154 - - 17 60.43 cM DNA segment, Chr 17, Massachusetts Institute of Technology 154 unknown 665641 Gm7726 EG665641 - 7 D2|7 predicted gene 7726 pseudo 14738 Mm.153539 NM_008151 ENSMUSG00000041468 Gpr12 Gpcr01|Gpcr12|Gpcr20|Gpcr21 - 5|5 G3 G-protein coupled receptor 12 protein-coding 116755 Cocrb9 - - - cocaine related behavior 9 unknown 54161 Mm.258785 NM_017477 ENSMUSG00000030058 Copg1 AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e - 6 D1|6 39.13 cM coatomer protein complex, subunit gamma 1 protein-coding 100041614 Gm13491 - - 2|2 C1.1 predicted gene 13491 pseudo 102640674 Gm36687 - - 17|17 predicted gene, 36687 ncRNA 61189 D1Mit103 - - 1 59.48 cM DNA segment, Chr 1, Massachusetts Institute of Technology 103 unknown 101055941 Gm29748 - - 17 B2|17 predicted gene, 29748 pseudo 243428 Igkv11-125 Gm10877|if11 - 6 C1|6 immunoglobulin kappa variable 11-125 other 76252 Mm.30214 NM_133764 ENSMUSG00000039347 Atp6v0e2 0610006O14Rik|NM9.2 - 6|6 B2.3 ATPase, H+ transporting, lysosomal V0 subunit E2 protein-coding 74602 Mm.394117 NR_040732 ENSMUSG00000097074 4833428L15Rik - - 9|9 A5.2 RIKEN cDNA 4833428L15 gene ncRNA 109206 5930412I24Rik - - - RIKEN cDNA 5930412I24 gene protein-coding 76222 Mm.86031 NR_131983 Magef1 6430590I03Rik - 16|16 B1 melanoma antigen family F, 1 pseudo 258542 Mm.246629 NM_146549 ENSMUSG00000095696 Olfr786 MOR111-5 - 10|10 D3 olfactory receptor 786 protein-coding 69726 Mm.222338 NM_027188 ENSMUSG00000055067 Smyd3 2410008A19Rik|Zmynd1 - 1 H4|1 83.48 cM SET and MYND domain containing 3 protein-coding 102634486 Gm38466 - - 10|10 predicted gene, 38466 ncRNA 434348 Mm.269474 LOC434348 - - 8|8 D3 uncharacterized LOC434348 ncRNA 102640939 XR_386770 Gm36885 - - 19 C3|19 predicted gene, 36885 ncRNA 102632823 XR_375446 Gm30797 - - 2 H4|2 predicted gene, 30797 ncRNA 100503040 Mm.490721 NR_040402 Gm19522 - - 16 B4|16 28.44 cM predicted gene, 19522 ncRNA 102466783 NR_105966 ENSMUSG00000099093 Mir7000 Gm27338|mmu-mir-7000 - 2|2 E1 microRNA 7000 ncRNA 56532 Mm.46612 NM_019955 ENSMUSG00000022221 Ripk3 2610528K09Rik|AW107945|Rip3 - 14|14 C3 receptor-interacting serine-threonine kinase 3 protein-coding 319403 Mm.406383 XR_385050 D430001F17Rik - - 16|16 C4 RIKEN cDNA D430001F17 gene ncRNA 62788 D15Mit207 - - 15 26.07 cM DNA segment, Chr 15, Massachusetts Institute of Technology 207 unknown 102638304 Gm34899 - - 13|13 predicted gene, 34899 ncRNA 19181 Mm.2462 NM_011188 ENSMUSG00000028932 Psmc2 - - 5 A3|5 9.97 cM proteasome (prosome, macropain) 26S subunit, ATPase 2 protein-coding 62701 D17Mit136 - - 17 20.67 cM DNA segment, Chr 17, Massachusetts Institute of Technology 136 unknown 78038 Mm.137327 NM_030026 ENSMUSG00000021646 Mccc2 4930552N12Rik|MCCB - 13|13 D1 methylcrotonoyl-Coenzyme A carboxylase 2 (beta) protein-coding 239114 Mm.390726 NM_145837 ENSMUSG00000050222 Il17d AI462269|IL-17D - 14|14 C3 interleukin 17D protein-coding 100418168 Gm19050 - - 14|14 D3 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 667572 Mm.482728 NR_033633 ENSMUSG00000098179 Gm8709 EG667572 - 10|10 A4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 70804 Mm.40321 NM_027558 ENSMUSG00000049940 Pgrmc2 4631434O19Rik|5730409G06Rik|DG6|PMBP - 3|3 B progesterone receptor membrane component 2 protein-coding 102467339 n-TLtaa3 n-Tl25 - 10 A2|10 nuclear encoded tRNA leucine 3 (anticodon TAA) tRNA 100035141 Lith19 - - 8 2.14 cM lithogenic gene 19 unknown 319940 Mm.441720 NR_045739 ENSMUSG00000085440 Sorbs2os D330022K07Rik - 8|8 B1.1 sorbin and SH3 domain containing 2, opposite strand ncRNA 72731 2810410P21Rik - - 9|9 RIKEN cDNA 2810410P21 gene protein-coding 100503780 Gm15094 - - X F3|X 68.46 cM predicted gene 15094 pseudo 110673 Hbvi D13Pas2 - - hepatitis B virus transgenic insertion site protein-coding 21019 T(1;6)42Ad T42Ad - - reciprocal translocation, Chr 1 and 6, Adler 42 other 71578 Mm.96996 NM_027832 ENSMUSG00000029865 Sval1 9130404C18Rik|SLP-C - 6|6 B2.1 seminal vesicle antigen-like 1 protein-coding 108463 Ms20 MMS20 - - minisatellites detected by probe MMS20 other 108588 Iap5ra8 - - - intracisternal A-type particle, U5 region, SINE repeat a-8 other 100041570 Gm13162 - - 4|4 E1 predicted pseudogene 13162 protein-coding 74691 Mm.60648 NM_029056 ENSMUSG00000054003 Tdrd9 4930441E05Rik - 12|12 F1 tudor domain containing 9 protein-coding 27745 D2Dcr19 - - - DNA segment, Chr 2, Derry C. Roopenian 19 unknown 327767 Gm5080 EG327767 - 10 B5.3|10 proteasome (prosome, macropain) subunit, alpha type 6 pseudogene pseudo 62554 D12Mit101 - - 12 51.55 cM DNA segment, Chr 12, Massachusetts Institute of Technology 101 unknown 105245171 XR_873110 Gm40661 - - 13 A1|13 predicted gene, 40661 ncRNA 546246 Gm5928 EG546246 - 13|13 A1 ribosomal protein S27a pseudo 110946 Tceb1l-rs1 15kDa|Ocp2-rs1 - - transcription elongation factor B (SIII), polypeptide 1-like, related sequence 1 protein-coding 269295 Mm.86447 NM_199223 ENSMUSG00000050896 Rtn4rl2 Ngr2|Ngrh1|Ngrl3 - 2|2 D reticulon 4 receptor-like 2 protein-coding 102632193 XR_383428 Gm30333 - - 14 C2|14 predicted gene, 30333 ncRNA 621495 Mm.362921 Krtap28-10 4733401N17Rik - 1|1 C5 keratin associated protein 28-10 protein-coding 214568 Mm.297405 NM_001033255 ENSMUSG00000071015 Gm136 - - 4|4 A5 predicted gene 136 protein-coding 20615 Mm.331182 NM_133854 ENSMUSG00000001018 Snapin 25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap - 3|3 F1 SNAP-associated protein protein-coding 107696 Capop - - 1 33.72 cM cyclophosphamide induced apoptosis protein-coding 21333 Mm.1440 NM_009311 ENSMUSG00000061762 Tac1 4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP - 6 A1|6 3.31 cM tachykinin 1 protein-coding 100039861 Mm.444347 Gm2464 - - 3 A1|3 predicted gene 2464 unknown 100039996 Gm11260 - - 4|4 C3 zinc finger, CCHC domain containing 9 pseudogene pseudo 100035837 Arigg9 - - - anti-RBC IgG antibodies 9 unknown 100417274 Gm15013 EG546380 - X|X F1 ribosomal protein S4, X-linked pseudogene pseudo 79554 Mm.25556 NM_024472 ENSMUSG00000029073 Cptp Gltpd1 - 4 E2|4 87.66 cM ceramide-1-phosphate transfer protein protein-coding 100043706 Mm.483825 NR_030681 ENSMUSG00000108470 Gm4598 - - 7 A3|7 predicted gene 4598 ncRNA 74041 Mm.26468 NM_028729 ENSMUSG00000030641 Ddias 4632434I11Rik|noxin - 7|7 E1 DNA damage-induced apoptosis suppressor protein-coding 723888 NR_030149 ENSMUSG00000070071 Mir465 Mirn465|mir-465a|mmu-mir-465 - X A7.1|X microRNA 465 ncRNA 723926 NR_029787 ENSMUSG00000065394 Mir25 Mirn25|mir-25|mmu-mir-25 - 5|5 G2 microRNA 25 ncRNA 17978 Mm.2537 NM_008678 ENSMUSG00000005886 Ncoa2 D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75 - 1 A3|1 4.12 cM nuclear receptor coactivator 2 protein-coding 381810 Mm.333386 NM_001163268 ENSMUSG00000067714 Lpar5 GPR93|Gm1072|Gpr92|LPA5 - 6|6 F2 lysophosphatidic acid receptor 5 protein-coding 73943 4930403O18Rik - - 16|16 RIKEN cDNA 4930403O18 gene protein-coding 692179 Mm.304143 Igk-V21 - - 6 C1|6 immunoglobulin kappa chain variable 21 (V21) other 76509 Mm.29959 NM_029639 ENSMUSG00000032068 Plet1 0610037B23Rik|1600029D21Rik|AA407923|AU043048 - 9|9 A5.3 placenta expressed transcript 1 protein-coding 103409 AW046457 - - - expressed sequence AW046457 unknown 105245944 XR_001781631 Gm41316 - - 15 B3.2|15 predicted gene, 41316 ncRNA 17711 CYTB - - - cytochrome b protein-coding 109280140 LOC109280140 Mm1326 - - VISTA enhancer mm1326 biological-region 105244563 XR_867667 Gm40156 - - 3 G3|3 predicted gene, 40156 ncRNA 574437 Mm.482923 NM_001081643 ENSMUSG00000073125 Xlr3b EG574437|Xlr3 - X|X A7.3 X-linked lymphocyte-regulated 3B protein-coding 105245259 Gm40737 - - 10|10 predicted gene, 40737 ncRNA 68880 Mm.390594 NM_001195435 ENSMUSG00000096537 Fam240b 1190003K10Rik - 13|13 B3 family with sequence similarity 240 member B protein-coding 100040551 Gm10036 - - 18|18 A1 ribosomal protein L11 pseudogene pseudo 54392 Mm.32012 NM_019438 ENSMUSG00000015880 Ncapg 5730507H05Rik|Hcapg|MFT.M05.13 - 5|5 B3 non-SMC condensin I complex, subunit G protein-coding 100034783 Nidds Nidd/SJL - - non-insulin-dependent diabetes mellitus in SJL unknown 15258 Mm.23790 NM_010433 ENSMUSG00000061436 Hipk2 1110014O20Rik|B230339E18Rik|Stank - 6|6 B1 homeodomain interacting protein kinase 2 protein-coding 64661 Mm.268157 NM_001033131 ENSMUSG00000074199 Krtdap Kdap|sk221 - 7|7 B1 keratinocyte differentiation associated protein protein-coding 56489 Mm.386783 NM_019777 ENSMUSG00000042349 Ikbke AW558201|IKK-E|IKK-i|IKKepsilon|Ikki - 1|1 E4 inhibitor of kappaB kinase epsilon protein-coding 404240 Mm.357942 NM_207539 ENSMUSG00000050870 Mrgprb8 MrgB8 - 7|7 B4 MAS-related GPR, member B8 protein-coding 111361 Mmv17 Mmv-17 - - MCF endogenous virus 17 other 102634769 Mm.376147 XR_388775 Gm32273 - - 11 B3|11 predicted gene, 32273 ncRNA 27515 B405C9S - - - DNA segment, B405C9S unknown 102634431 Mm.387913 NR_110513 ENSMUSG00000111602 Gm32014 - - 9 A1|9 predicted gene, 32014 ncRNA 105245872 XR_875002 Gm41256 - - 15 A1|15 predicted gene, 41256 ncRNA 625054 Mm.311918 NR_003363 Gm6548 EG625054 - 17|17 E3 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 22746 Mm.288396 NM_001001130 ENSMUSG00000058331 Zfp85 KRAB19|Rslcan2|Zfp71|Zfp85-rs1 - 13 B3|13 34.74 cM zinc finger protein 85 protein-coding 62566 D12Mit133 - - 12 60.56 cM DNA segment, Chr 12, Massachusetts Institute of Technology 133 unknown 668614 Gm9269 EG668614 - 12|12 A1.2 predicted gene 9269 pseudo 666093 Gm7925 EG666093 - 14|14 B predicted gene 7925 pseudo 105247177 LOC105247177 - - 4 D2.3 cytochrome c-like pseudo 105245577 XM_017315663 LOC105245577 - - 13 B3 zinc finger protein 431-like protein-coding 621561 Mm.480270 NM_001166726 ENSMUSG00000093890 Vmn1r127 Gm6239 - 7 A3|7 vomeronasal 1 receptor 127 protein-coding 102633219 XR_387399 Gm31101 - - 1 E4|1 predicted gene, 31101 ncRNA 116855 Bdt1 - - 2 87.22 cM bone density traits 1 unknown 215632 Mm.490434 NM_177611 ENSMUSG00000026979 Psd4 BC046518|EFA6B - 2|2 A3 pleckstrin and Sec7 domain containing 4 protein-coding 68720 Mm.291769 NM_026822 ENSMUSG00000027923 Lce1b 1110029C13Rik|Sprrl5 - 3|3 F1 late cornified envelope 1B protein-coding 17828 Mm.261554 NM_139063 ENSMUSG00000038982 Bloc1s5 1810074A19Rik|Muted|mu - 13 A3.3|13 18.35 cM biogenesis of lysosomal organelles complex-1, subunit 5, muted protein-coding 107812 Tel5q1 - - - telomeric repeat sequence, Chr 5, q arm 1 protein-coding 109280135 LOC109280135 Mm1309 - - VISTA enhancer mm1309 biological-region 108167450 XR_001778235 LOC108167450 - - 7 E2 uncharacterized LOC108167450 ncRNA 62758 D17Mit185 - - 17 39.3 cM DNA segment, Chr 17, Massachusetts Institute of Technology 185 unknown 319213 NM_175672 4930579C12Rik - - 9|9 E3.1 RIKEN cDNA 4930579C12 gene unknown 111416 Mtv14 Mtv-14 - - mammary tumor virus locus 14 other 102633451 Gm29110 - - Y|Y predicted gene 29110 protein-coding 435529 Mm.136350 NM_001033493 ENSMUSG00000057899 Adgrf2 Gpr111|PGR20 - 17|17 B3 adhesion G protein-coupled receptor F2 protein-coding 100040493 Mm.330175 XR_866164 Gm13429 - - 2|2 B predicted gene 13429 unknown 111847 Iapls3-24 - - - intracisternal A particle, lymphocyte specific 3-24 other 23811 B292G21S - - - DNA segment B292-G-21-S unknown 102632940 Mm.399154 NR_151544 ENSMUSG00000086817 Gm11482 - - 4 C1|4 34.04 cM predicted gene 11482 ncRNA 77332 C030012D19Rik - - 4|4 RIKEN cDNA C030012D19 gene protein-coding 68493 Mm.204831 NM_026742 ENSMUSG00000028261 Ndufaf4 1110007M04Rik|3000003G13Rik|AW214064 - 4|4 A3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4 protein-coding 102466217 NR_106000 ENSMUSG00000099212 Mir7033 Gm27687|mmu-mir-7033 - 5|5 G2 microRNA 7033 ncRNA 100040826 Gm2986 - - 5 E2|5 predicted gene 2986 pseudo 19480 Rb(12.13)15Tu Rb15Tu - - Robertsonian translocation, Chr 12 and 13, Tubingen 15 other 640497 Ighv1-25 EG640497|Gm7296 - 12|12 F2 immunoglobulin heavy variable 1-25 pseudo 75759 9130011L11Rik - - 1|1 RIKEN cDNA 9130011L11 gene protein-coding 100503379 Gm16279 - - 17|17 18.75 cM predicted gene 16279 ncRNA 100041949 Gm3585 - - 7|7 A1 zinc finger protein 772 pseudogene pseudo 105243427 XR_870834 Gm39353 - - 9 B|9 predicted gene, 39353 ncRNA 102638653 XR_383410 Gm35166 - - 14 C1|14 predicted gene, 35166 ncRNA 70901 Mm.158484 NM_027598 ENSMUSG00000039540 4921524L21Rik - - 18|18 A1 RIKEN cDNA 4921524L21 gene protein-coding 83669 Mm.335454 NM_031392 ENSMUSG00000066357 Wdr6 mWDR6 - 9|9 F2 WD repeat domain 6 protein-coding 100503879 Mm.380109 NM_001195727 ENSMUSG00000078611 Gm5901 EG545989 - 7|7 E3 predicted gene 5901 protein-coding 68691 Mm.240912 NM_177645 ENSMUSG00000026004 Kansl1l 1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189 - 1|1 C3 KAT8 regulatory NSL complex subunit 1-like protein-coding 24086 Mm.126976 NM_011903 ENSMUSG00000020694 Tlk2 4933403M19Rik|PKU-alpha|PKUalpha|Tlk - 11|11 E1 tousled-like kinase 2 (Arabidopsis) protein-coding 18139 Mm.132392 NM_008717 ENSMUSG00000030016 Zfp638 AI323587|Np220|Zfml|Znf638|mNP220 - 6|6 C3 zinc finger protein 638 protein-coding 100035753 Tbbmd6 - - 14 45.96 cM total body bone mineral density 6 unknown 225004 Mm.134151 NM_146082 ENSMUSG00000044375 BC027072 - - 17|17 E1.3 cDNA sequence BC027072 protein-coding 102466228 NR_106077 ENSMUSG00000106215 Mir7218 mmu-mir-7218 - 17|17 A3.3 microRNA 7218 ncRNA 100124494 NR_030558 ENSMUSG00000065509 Mir421 Mirn421|mmu-mir-421 - X D|X microRNA 421 ncRNA 102632629 Gm30655 - - 13|13 predicted gene, 30655 ncRNA 53780 D18Byu22 D0Byu22 - - DNA segment, Chr 18, Brigham Young University 22 unknown 105244526 XR_867555 Gm40120 - - 3 F2.3|3 predicted gene, 40120 ncRNA 102640311 XR_383497 Gm36410 - - 14 D1|14 predicted gene, 36410 ncRNA 14886 Mm.261570 NM_010365 ENSMUSG00000060261 Gtf2i 6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6 - 5 G2|5 74.48 cM general transcription factor II I protein-coding 545388 Mm.441390 NM_001039518 Rbm8a2 B020018G12Rik|Y14 - 1|1 H4 RNA binding motif protein 8A2 pseudo 666427 Mm.442472 Gm8098 EG666427 - 11|11 A3.3 predicted gene 8098 unknown 14852 Mm.325827 NM_146066 ENSMUSG00000062203 Gspt1 AI314175|AI326449|AV307676|C79774|G1st|Gst-1 - 16 A1|16 6.38 cM G1 to S phase transition 1 protein-coding 668455 Mrto4-ps1 EG668455|Gm9178 - 12|12 A1.2 mRNA turnover 4, pseudogene 1 pseudo 667218 Gm8522 EG667218 - X|X A7.3 predicted gene 8522 pseudo 404471 Olfr1078-ps1 EG257825|GA_x5J8B7W4CQV-78329-78805 - 2|2 D olfactory receptor 1078, pseudogene 1 pseudo 100039550 Mm.458011 NM_001109970 ENSMUSG00000073247 Gm10486 - - X|X A3.3 predicted gene 10486 protein-coding 633484 Gm7113 EG633484 - X|X C2 melanoma antigen, family B pseudogene pseudo 227058 Mm.296880 NM_001160386 ENSMUSG00000041144 Dnah7b Dnahc7b|Gm107 - 1|1 C1.1 dynein, axonemal, heavy chain 7B protein-coding 100043026 Vmn1r-ps77 EG667412|Gm16450 - 7|7 A3 vomeronasal 1 receptor, pseudogene 77 pseudo 17969 Mm.425296 NM_010876 ENSMUSG00000015950 Ncf1 NCF-47K|NOXO2|Ncf-1|p47-phox|p47|p47phox - 5 G2|5 74.47 cM neutrophil cytosolic factor 1 protein-coding 100038637 Mm.213199 Gm10134 - - - predicted gene 10134 unknown 258765 Mm.223196 NM_146769 ENSMUSG00000075159 Olfr1110 MOR172-4 - 2|2 D olfactory receptor 1110 protein-coding 114543 Bbaa8 Bb8 - 17 19.16 cM B.burgdorferi-associated arthritis 8 unknown 103372 AU041419 - - - expressed sequence AU041419 unknown 102633281 XR_385640 Gm31143 - - 17 C|17 predicted gene, 31143 ncRNA 433193 Rps15-ps3 EG433193|Gm5508 - 18|18 E1 ribosomal protein S15, pseudogene 3 pseudo 102635193 Gm32593 - - 11|11 predicted gene, 32593 ncRNA 102639466 Gm35773 - - 5|5 predicted gene, 35773 protein-coding 623143 Gm6399 EG623143 - 17|17 E1.3 dephospho-CoA kinase domain containing pseudogene pseudo 217379 Mm.259170 NM_145441 ENSMUSG00000020634 Ubxn2a 6330407P03Rik|Ubxd4 - 12|12 A1.1 UBX domain protein 2A protein-coding 208144 Mm.296385 NM_203319 ENSMUSG00000029480 Dhx37 Gm1050|Gm451|mKIAA1517 - 5|5 G1.1 DEAH (Asp-Glu-Ala-His) box polypeptide 37 protein-coding 218624 Mm.380801 NM_139299 ENSMUSG00000050377 Il31ra CRL3|GLM-R|GPL|Glmr|NR10 - 13|13 D2.2 interleukin 31 receptor A protein-coding 110438 Dxcp2 Cps-1|Dcp-2|Dcp2 - 17|17 dexamethasone induced cleft palate 2 protein-coding 100036085 Manln15 - - 14 11.53 cM mandible length 15 unknown 105247046 XR_880867 Gm42223 - - 5 A3|5 predicted gene, 42223 ncRNA 61511 D8Mit125 - - 8 21.16 cM DNA segment, Chr 8, Massachusetts Institute of Technology 125 unknown 102637942 LOC102637942 - - - uncharacterized LOC102637942 ncRNA 780817 Ighv3-2 Gm16999|Igh - 12|12 F1 immunoglobulin heavy variable 3-2 pseudo 17747 TrnY - - - tRNA tRNA 108148 Mm.33808 NM_139272 ENSMUSG00000089704 Galnt2 AI480629 - 8|8 E2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 66686 Mm.62982 NM_025705 ENSMUSG00000019891 Dcbld1 4631413K11Rik - 10|10 B3 discoidin, CUB and LCCL domain containing 1 protein-coding 27660 Mm.390827 NM_138581 ENSMUSG00000033029 1700088E04Rik ESTJ0827E04 - 15 E1|15 37.7 cM RIKEN cDNA 1700088E04 gene protein-coding 112163581 AI642918 - - - expressed sequence AI642918 protein-coding 105243124 XR_870153 Gm15351 - - 8 A1.1|8 5.73 cM predicted gene 15351 ncRNA 67418 Mm.38927 NM_026141 ENSMUSG00000015757 Ppil4 3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase - 10|10 A1 peptidylprolyl isomerase (cyclophilin)-like 4 protein-coding 78334 Mm.200924 NM_198164 ENSMUSG00000038481 Cdk19 2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028 - 10|10 B1 cyclin-dependent kinase 19 protein-coding 71326 Mm.90177 NM_027763 ENSMUSG00000023993 Treml1 5430401J17Rik|TLT-1 - 17|17 C triggering receptor expressed on myeloid cells-like 1 protein-coding 73816 Mm.390391 NR_045942 ENSMUSG00000085528 4930401O10Rik - - 11|11 B4 RIKEN cDNA 4930401O10 gene ncRNA 493071 Lgth5 - - 9 32.76 cM body length 5 unknown 102637330 Gm34169 - - 6 B3|6 predicted gene, 34169 pseudo 269198 Mm.205224 NM_173444 ENSMUSG00000073664 Nbeal1 2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17 - 1|1 C2 neurobeachin like 1 protein-coding 100036381 Elda3 - - - ethanol induced low dose activation 3 unknown 100034925 Lvrq10 - - - liver weight QTL 10 unknown 56275 Mm.276338 NM_019869 ENSMUSG00000006456 Rbm14 1300007E16Rik|PSP2|Sytip|p16|p16K - 19|19 A RNA binding motif protein 14 protein-coding 102635520 XR_382264 Gm32833 - - 13 A4|13 predicted gene, 32833 ncRNA 100534641 Mm.410818 Gm13856 - - 6 14.75 cM predicted gene 13856 ncRNA 627191 Mm.152484 NM_001033334 ENSMUSG00000071234 Syndig1l DSPC1|Gm261|SynDIG2|Tmem90a - 12|12 D1 synapse differentiation inducing 1 like protein-coding 102634717 XR_380826 Gm32235 - - 10 D2|10 predicted gene, 32235 ncRNA 102635760 LOC102635760 - - X F5 coiled-coil-helix-coiled-coil-helix domain-containing protein 5 pseudogene pseudo 360048 D17Jcs75 - - - DNA segment, Chr 17, John C. Schimenti 75 unknown 102640210 XR_384843 Gm36333 - - 16 B4|16 predicted gene, 36333 ncRNA 69402 XR_868479 ENSMUSG00000107027 1700019F05Rik Gm43801 - 5|5 C3.3 RIKEN cDNA 1700019F05 gene ncRNA 69988 2010205J10Rik BB117333 - - RIKEN cDNA 2010205J10 gene protein-coding 258852 Mm.377720 NM_146853 ENSMUSG00000046790 Olfr1341 MOR258-1 - 4|4 D2.1 olfactory receptor 1341 protein-coding 100042195 Gm20905 - - Y|Y predicted gene, 20905 protein-coding 110120399 LOC110120399 - - - VISTA enhancer mm981 biological-region 105247137 XR_881295 Gm42291 - - 4 B3|4 predicted gene, 42291 ncRNA 16426 Mm.4517 NM_008407 ENSMUSG00000006522 Itih3 AW108094|ITI-HC3|Intin3|Itih-3 - 14|14 B inter-alpha trypsin inhibitor, heavy chain 3 protein-coding 56546 Mm.56914 NM_019934 ENSMUSG00000040364 Sec1 Fut10|Fut3 - 7 B3|7 29.43 cM secretory blood group 1 protein-coding 100093668 Trnah-aug - - - transfer RNA histidine(anticodon AUG) tRNA 666078 Gm12058 - - 11|11 A3.2 ribosomal protein S16 pseudogene pseudo 225651 Mm.235792 NM_172630 ENSMUSG00000062526 Mppe1 Pgap5 - 18|18 E1 metallophosphoesterase 1 protein-coding 102634990 Gm32439 - - 10|10 predicted gene, 32439 ncRNA 102635956 Gm33161 - - 2|2 predicted gene, 33161 protein-coding 102633761 XR_882312 Gm31511 - - Y A1|Y predicted gene, 31511 ncRNA 100151692 Gm11198 - - 11|11 B5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 66211 Mm.46198 NM_025425 ENSMUSG00000002500 Rpl3l 1110057H16Rik - 17|17 A3.3 ribosomal protein L3-like protein-coding 266632 Mm.422858 NM_029926 ENSMUSG00000059883 Irak4 8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64 - 15|15 E3 interleukin-1 receptor-associated kinase 4 protein-coding 636931 Mm.17857 NM_001042503 ENSMUSG00000079259 Trim71 2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41 - 9|9 F3 tripartite motif-containing 71 protein-coding 110726 Idd12 - - 14 20.81 cM insulin dependent diabetes susceptibility 12 protein-coding 70003 Mm.48789 NR_038042 ENSMUSG00000056821 1700028I16Rik - - 10|10 C1 RIKEN cDNA 1700028I16 gene ncRNA 102636207 NR_148724 Gm33340 Gm40882 - 12 B1|12 predicted gene, 33340 ncRNA 330166 Mm.44854 NR_003718 ENSMUSG00000097767 Miat 3632434I06|A230057G18Rik|Rncr2|gomafu - 5|5 F myocardial infarction associated transcript (non-protein coding) ncRNA 102635068 Gm24392 - - 14 C3|14 predicted gene, 24392 pseudo 244694 Mm.240457 NM_173433 ENSMUSG00000053914 Kdm4d 4932416A15|Jmjd2d - 9|9 A2 lysine (K)-specific demethylase 4D protein-coding 668149 Gm9004 EG668149 - 10|10 D2 ribosomal protein S2 pseudogene pseudo 320289 Mm.347724 B830004H01Rik - - 4|4 E1 RIKEN cDNA B830004H01 gene unknown 110272 Ftl1-rs4 - - - ferritin light chain 1, related sequence 4 protein-coding 16456 Mm.294882 NM_172647 ENSMUSG00000038235 F11r 9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106 - 1 H3|1 79.43 cM F11 receptor protein-coding 667966 Gm8900 EG667966 - 16 C1.1|16 predicted gene 8900 pseudo 100503530 Mm.86763 NR_045062 ENSMUSG00000086531 Gm11351 - - 13 A3.1|13 11.58 cM predicted gene 11351 ncRNA 100416684 Gm18191 Gm18202 - 7|7 A1 zinc finger protein 772 pseudogene pseudo 72562 Mm.28145 NM_028281 ENSMUSG00000021496 Pcbd2 2700061N24Rik|Dcoh2|Dcohm - 13|13 B1 pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 protein-coding 102635901 XR_001785286 Gm10444 - - 6 C3|6 37.16 cM predicted pseudogene 10444 ncRNA 319355 C530036F05Rik - - 4|4 RIKEN cDNA C530036F05 gene protein-coding 547127 Mm.297552 NM_001045538 Tmem181b-ps Tmem181b - 17 A1|17 transmembrane protein 181B, pseudogene pseudo 15027 H2-T13 H-2T13 - - histocompatibility 2, T region locus 13 protein-coding 100034758 Bpq7 - - 7 49.01 cM blood pressure QTL 7 unknown 320121 6720473M08Rik - - 16|16 RIKEN cDNA 6720473M08 gene protein-coding 102639066 XR_389071 Gm35469 - - 11 E1|11 predicted gene, 35469 ncRNA 110120363 LOC110120363 - - - VISTA enhancer mm36 biological-region 100417529 Gm18668 - - 5|5 A1 arginine/serine-rich coiled-coil 2 pseudogene pseudo 69421 Mm.451558 1700022F17Rik - - 12|12 A1.3 RIKEN cDNA 1700022F17 gene protein-coding 107936 Idd9.2 - - - insulin dependent diabetes susceptibility 9.2 protein-coding 12566 Mm.111326 NM_016756 ENSMUSG00000025358 Cdk2 A630093N05Rik - 10|10 D3 cyclin-dependent kinase 2 protein-coding 493012 Pbwg13 - - 5 81.28 cM postnatal body weight growth 13 unknown 78207 Mm.402021 4930556G22Rik - - - RIKEN cDNA 4930556G22 gene protein-coding 100418381 Gm16209 - - 8|8 D3 translocase of inner mitochondrial membrane 23 homolog pseudogene pseudo 100416692 Gm18199 - - 7|7 A1 zinc finger protein 772 pseudogene pseudo 100040021 Rpl9-ps7 Gm9822 - 2|2 C2 ribosomal protein L9, pseudogene 7 pseudo 258727 Mm.377660 NM_146732 ENSMUSG00000096465 Olfr488 MOR204-15 - 7|7 E3 olfactory receptor 488 protein-coding 70619 5730510P18Rik - - 12|12 A1.1 RIKEN cDNA 5730510P18 gene unknown 109279963 LOC109279963 Mm429 - - VISTA enhancer mm429 biological-region 105245453 XR_873142 LOC105245453 - - 13 A1 nidogen-1-like protein-coding 105243303 Gm39263 - - 8|8 predicted gene, 39263 ncRNA 75440 Mm.396162 1700010K24Rik - - 3|3 RIKEN cDNA 1700010K24 gene protein-coding 359903 DXMgc56 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 56 unknown 100417052 Gm18386 - - X|X B lin-37 homolog pseudogene pseudo 666888 Gm8346 EG666888 - X|X F3 lysyl-tRNA synthetase pseudogene pseudo 69428 Mm.84467 NM_027077 ENSMUSG00000015962 1700016C15Rik - - 1|1 H4 RIKEN cDNA 1700016C15 gene protein-coding 61985 D9Mit312 - - 9 29.84 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 312 unknown 74419 Mm.159193 NM_028927 ENSMUSG00000025519 Tktl2 4933401I19Rik - 8|8 B3.1 transketolase-like 2 protein-coding 105244511 XR_867494 Gm40105 - - 3 F2.2|3 predicted gene, 40105 ncRNA 69188 Mm.205190 NM_026984 ENSMUSG00000029004 Kmt2e 1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L - 5|5 A3 lysine (K)-specific methyltransferase 2E protein-coding 105246012 XR_875560 Gm41377 - - 15 E3|15 predicted gene, 41377 ncRNA 622640 XM_011244839 ENSMUSG00000091882 Gm6337 EG622640 - 14|14 A1 predicted gene 6337 protein-coding 109280051 LOC109280051 Mm445 - - VISTA enhancer mm445 biological-region 100043121 Gm10175 - - 7|7 A3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) pseudogene pseudo 100418159 Gm19042 - - X|X C1 proteasome (prosome, macropain) inhibitor subunit 1 pseudogene pseudo 225468 Gm4840 EG225468 - 18|18 C symplekin pseudogene pseudo 12231 Mm.1420 NM_013483 ENSMUSG00000000706 Btn1a1 Btn - 13 A3.1|13 9.72 cM butyrophilin, subfamily 1, member A1 protein-coding 102642900 XR_875561 Gm38643 - - 15 E3|15 predicted gene, 38643 ncRNA 100503356 Gm19653 - - 6 D3|6 44.98 cM uncharacterized protein C3orf38 homolog pseudo 20715 Mm.312628 NM_009251 Serpina3g 2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 3G protein-coding 100416594 Gm18163 - - 3|3 F3 zinc finger protein 617 pseudogene pseudo 112278 Pas1 Pas-1 - 6 78.22 cM pulmonary adenoma susceptibility 1 unknown 546265 Gm5931 EG546265 - X|X A1.1 ubiquitin-conjugating enzyme E2I pseudogene pseudo 102633583 XR_379350 Gm31374 - - 9 A5.2|9 predicted gene, 31374 ncRNA 100036300 Wbcq4 - - - white blood cell QTL 4 unknown 93843 Mm.89564 NM_012040 ENSMUSG00000002012 Pnck Bstk3|CaMKIbeta2|CaMKlb2|Camk1b|Punc|caMKlb1 - X A7.3|X 37.38 cM pregnancy upregulated non-ubiquitously expressed CaM kinase protein-coding 383923 Gm5281 - - 3 G3|3 eukaryotic translation initiation factor 2C, 2 pseudogene pseudo 78369 Mm.30220 NM_023892 ENSMUSG00000001014 Icam4 1810015M19Rik|Cd242|ICAM-4 - 9 A3|9 7.69 cM intercellular adhesion molecule 4, Landsteiner-Wiener blood group protein-coding 98496 Mm.187470 NM_001003948 ENSMUSG00000045658 Pid1 5033414K04Rik|NYGGF4|P-CLI1 - 1|1 C5 phosphotyrosine interaction domain containing 1 protein-coding 791324 Mm.461821 Gm9799 - - 3 G3|3 predicted gene 9799 unknown 19416 Mm.3903 NM_009026 ENSMUSG00000049892 Rasd1 Dexras1 - 11|11 B1.3 RAS, dexamethasone-induced 1 protein-coding 433885 Gm5555 EG433885 - 5|5 B3 NSFL1 (p97) cofactor (p47) pseudogene pseudo 100042409 Gm20915 - - Y|Y predicted gene, 20915 pseudo 258579 Mm.223106 NM_146586 ENSMUSG00000043892 Olfr1018 MOR260-5 - 2|2 D olfactory receptor 1018 protein-coding 61772 D3Mit275 - - 3 25.61 cM DNA segment, Chr 3, Massachusetts Institute of Technology 275 unknown 100669 Mm.296839 9930105H17Rik AI462335 - - RIKEN cDNA 9930105H17 gene other 71175 Mm.240329 NM_027707 ENSMUSG00000022141 Nipbl Idn3 - 15|15 A1 NIPBL cohesin loading factor protein-coding 105244611 Gm12333 - - 11|11 45.76 cM predicted gene 12333 ncRNA 240216 Mm.252323 NM_172831 ENSMUSG00000044719 E230025N22Rik EG240216 - 18|18 B2 Riken cDNA E230025N22 gene protein-coding 102632244 XR_385744 Gm30375 - - 17 E1.3|17 predicted gene, 30375 ncRNA 230484 Mm.371692 NM_146144 ENSMUSG00000028560 Usp1 - - 4|4 C6 ubiquitin specific peptidase 1 protein-coding 66297 Mm.45203 NM_183252 ENSMUSG00000060424 Pantr1 2610017I09Rik|Pou3f3os|linc-Brn1a - 1|1 B POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1 ncRNA 105745 AA517542 - - - expressed sequence AA517542 unknown 66614 Mm.46029 NM_025663 ENSMUSG00000028069 Gpatch4 2610029K21Rik|Gpatc4 - 3|3 F1 G patch domain containing 4 protein-coding 269642 Mm.274610 NM_001001985 ENSMUSG00000048142 Nat8l 1110038O08Rik|Shati - 5|5 B2 N-acetyltransferase 8-like protein-coding 75642 Mm.159541 NM_029370 ENSMUSG00000017767 Spata25 1700020C07Rik|Tsg23 - 2|2 H3 spermatogenesis associated 25 protein-coding 233208 Mm.28298 NM_001008422 ENSMUSG00000038406 Scaf1 AI480556|SR-A1 - 7|7 B3 SR-related CTD-associated factor 1 protein-coding 105244408 Gm40021 - - 2|2 predicted gene, 40021 protein-coding 53700 D7Citb2 D7Ag2 - - DNA segment, Chr 7, California Institute of Technology, Biology Department 2 unknown 619557 Mm.424738 NM_001035114 ENSMUSG00000104442 4932431L22Rik - - Y C3|Y RIKEN cDNA 4932431L22 gene protein-coding 100035800 Bsbob4 - - 12 57.3 cM BSB obesity 4 unknown 21068 T(11;17)202Dn T202Dn - - reciprocal translocation, Chr 11 and 17, Davisson 202 other 60738 D1Mit49 - - 1 44.07 cM DNA segment, Chr 1, Massachusetts Institute of Technology 49 unknown 73721 Mm.45614 NM_028624 ENSMUSG00000028441 1110017D15Rik Cbe1|Smrp1 - 4|4 A5 RIKEN cDNA 1110017D15 gene protein-coding 102631868 Mm.365654 XR_374869 ENSMUSG00000086758 Gm13912 - - 2 E3|2 56.17 cM predicted gene 13912 ncRNA 102634056 XR_881934 Gm31735 - - 7 B1|7 predicted gene, 31735 ncRNA 102638228 Gm29525 - - Y|Y predicted gene 29525 protein-coding 226564 Mm.155164 NM_144878 ENSMUSG00000026692 Fmo4 D1Ertd532e - 1 H2.1|1 70.34 cM flavin containing monooxygenase 4 protein-coding 100861825 XM_017318824 Gm21248 - - Y D|Y predicted gene, 21248 protein-coding 102635775 Mm.334261 XR_869968 Gm33027 Gm44591 - 7 F3|7 predicted gene, 33027 ncRNA 12970 Mm.6253 NM_009967 ENSMUSG00000033501 Crygs AI327013|Opj|rncat - 16 B1|16 13.66 cM crystallin, gamma S protein-coding 67071 Mm.37617 NM_025949 ENSMUSG00000025665 Rps6ka6 2610524K04Rik|RSK4|S6K-alpha-6 - X|X E1 ribosomal protein S6 kinase polypeptide 6 protein-coding 100416874 Gm14537 EG668282 - X|X A1.3 high mobility group box 2 pseudogene pseudo 99947 BB145683 - - - expressed sequence BB145683 unknown 258834 Mm.223259 NM_146837 ENSMUSG00000058194 Olfr1126 MOR264-5 - 2|2 D olfactory receptor 1126 protein-coding 723835 NR_030404 ENSMUSG00000065482 Mir302c Mirn302c|mir-302c - 3|3 G2 microRNA 302c ncRNA 77028 4921520E09Rik - - 7|7 RIKEN cDNA 4921520E09 gene protein-coding 103014 Mm.487061 AW060748 - - - expressed sequence AW060748 unknown 62879 D11Mit236 - - 11 27.39 cM DNA segment, Chr 11, Massachusetts Institute of Technology 236 unknown 100417484 Gm18641 - - 7|7 A1 Ewing sarcoma breakpoint region 1 pseudogene pseudo 17733 TrnI - - - tRNA tRNA 320842 Mm.487476 NR_015492 ENSMUSG00000085024 C230035I16Rik - - 13|13 A3.1 RIKEN cDNA C230035I16 gene ncRNA 102641666 LOC102641666 - - - cyclic AMP-dependent transcription factor ATF-2 protein-coding 21227 T(6;)39H T(6;?)39H|T39H - - reciprocal translocation, Chr 6 and, Harwell 39 other 102631779 Mm.419282 Gm15581 - - 6|6 7.7 cM predicted gene 15581 ncRNA 17776 Mm.9287 NM_008641 ENSMUSG00000003810 Mast2 MAST205|Mtssk - 4|4 D1 microtubule associated serine/threonine kinase 2 protein-coding 17727 TrnC - - - tRNA tRNA 27539 D15N8 335A5Sp6 - - DNA segment, Chr 15, NIH 8 unknown 72865 Mm.158897 NM_028375 ENSMUSG00000051851 Rtl8c 2900027G03Rik|Cxx1c|Mar8.1|Mart8a - X|X A5 retrotransposon Gag like 8C protein-coding 228880 Mm.227598 NM_027230 ENSMUSG00000039671 Zmynd8 1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7 - 2|2 H3 zinc finger, MYND-type containing 8 protein-coding 100034983 Bwnd2wk7 - - - body weight, NMR1 x DBA, 2 week, QTL 7 unknown 353504 Mm.442720 NR_002866 ENSMUSG00000113581 Dio3os AW556460|Dio3as - 12|12 F1 deiodinase, iodothyronine type III, opposite strand ncRNA 108427 Xmmv41 Env-41|Xmmv-41 - - xenotropic-MCF leukemia virus 41 other 62747 D17Mit208 - - 17 50.3 cM DNA segment, Chr 17, Massachusetts Institute of Technology 208 unknown 105244448 LOC105244448 - - 3 D NEDD8-conjugating enzyme UBE2F pseudogene pseudo 111488 Xmmv29 Env-29|Xmmv-29 - - xenotropic-MCF leukemia virus 29 other 76626 Mm.400451 NM_054043 ENSMUSG00000069769 Msi2 1700105C15Rik|AI451722|AI563628|AW489193|Msi2h - 11|11 C musashi RNA-binding protein 2 protein-coding 56513 Mm.472753 NM_019695 ENSMUSG00000005699 Pard6a 0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40 - 8|8 D3 par-6 family cell polarity regulator alpha protein-coding 277771 Gm12378 - - 4|4 A5 predicted gene 12378 pseudo 258869 Mm.335067 NM_146869 ENSMUSG00000049098 Olfr147 M3|MOR164-1 - 9|9 A5.1 olfactory receptor 147 protein-coding 666669 Gm8226 EG666669 - 9|9 E2 ribosomal protein L7A pseudogene pseudo 71087 Mm.399523 4933409K08Rik - - 7|7 RIKEN cDNA 4933409K08 gene protein-coding 105245968 XR_875389 Gm41339 - - 15 D1|15 predicted gene, 41339 ncRNA 107713 Ptma-rs3 - - - prothymosin alpha, related sequence 3 protein-coding 102641315 LOC102641315 - - - NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 protein-coding 640374 Gm7293 - - 9 A5.3|9 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 75052 4930509B17Rik - - 3|3 RIKEN cDNA 4930509B17 gene protein-coding 404313 Mm.377731 NM_207553 ENSMUSG00000096757 Olfr251 MOR170-15 - 9|9 A5.1 olfactory receptor 251 protein-coding 108168680 XM_017318910 LOC108168680 - - - uncharacterized LOC108168680 protein-coding 100417850 Gm18861 - - 6|6 A3.1 predicted gene, 18861 pseudo 105242630 XR_868977 Gm38789 - - 6 B1|6 predicted gene, 38789 ncRNA 102632553 Gm30598 - - Y|Y predicted gene, 30598 protein-coding 61646 D8Mit211 - - 8 52.0 cM DNA segment, Chr 8, Massachusetts Institute of Technology 211 unknown 62312 D1Mit274 - - 1 93.33 cM DNA segment, Chr 1, Massachusetts Institute of Technology 274 unknown 105246806 XR_878997 Gm42030 - - 8 C2|8 predicted gene, 42030 ncRNA 52401 Mm.33854 NR_131933 ENSMUSG00000029092 D5Ertd615e 4930435H24Rik - 5 B3|5 DNA segment, Chr 5, ERATO Doi 615, expressed ncRNA 230235 Mm.207654 NM_001142965 ENSMUSG00000045589 Frrs1l 6430704M03Rik - 4|4 B3 ferric-chelate reductase 1 like protein-coding 622175 Mm.398064 XR_382656 E430024I08Rik EG622175 - 13|13 C1 RIKEN cDNA E430024I08 gene ncRNA 102640664 XR_373374 Gm36678 - - 1 B|1 predicted gene, 36678 ncRNA 630810 Gm7043 EG630810 - 17|17 A1 ribosomal protein L18A pseudogene pseudo 386450 Mm.425889 Trav7-4 Gm13949 - 14 C2|14 T cell receptor alpha variable 7-4 other 258105 Mm.377351 NM_001011835 ENSMUSG00000075139 Olfr1162 MOR174-14 - 2|2 D olfactory receptor 1162 protein-coding 100041235 Gm3221 - - 14|14 C1 predicted gene 3221 pseudo 22627 Mm.234700 NM_009536 ENSMUSG00000020849 Ywhae AU019196 - 11 B5|11 45.92 cM tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide protein-coding 61954 D7Mit311a D7Mit311 - 7 28.25 cM DNA segment, Chr 7, Massachusetts Institute of Technology 311a unknown 67105 Mm.250617 NM_025969 ENSMUSG00000024645 Timm21 1700034H14Rik|2700002I20Rik - 18|18 E4 translocase of inner mitochondrial membrane 21 protein-coding 105245081 XR_871316 Gm40581 - - 9 F3|9 predicted gene, 40581 ncRNA 108168503 Gm46699 - - Y A1|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 102635830 XR_878340 Gm29371 - - 1 C5|1 predicted gene 29371 ncRNA 102641235 Cbx3-ps3 - - 4|4 C3 chromobox 3, pseudogene 3 pseudo 668320 Gm9105 EG668320 - 7 E3|7 peptidylprolyl isomerase (cyclophilin)-like 2 pseudogene pseudo 407799 Mm.91493 BC049285 - - - cDNA sequence BC049285 protein-coding 107547 Bkm4 Bkm-4 - - banded krait minor satellite DNA 4 other 79464 Mm.195776 NM_024471 ENSMUSG00000029199 Lias 2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn - 5|5 C3.1 lipoic acid synthetase protein-coding 102635054 XR_390552 Gm32487 - - 4 B1|4 predicted gene, 32487 ncRNA 67881 Mm.24601 NM_023397 ENSMUSG00000002329 Mdp1 1810034K20Rik|AI035604 - 14|14 C3 magnesium-dependent phosphatase 1 protein-coding 102632574 Gm30612 - - 1|1 predicted gene, 30612 protein-coding 14343 Mm.56933 NM_008051 ENSMUSG00000008461 Fut1 - - 7 B3|7 29.39 cM fucosyltransferase 1 protein-coding 100526528 NR_037294 ENSMUSG00000105458 Mir3074-2 mir-3074-2|mmu-mir-3074-2 - 8 C2|8 40.58 cM microRNA 3074-2 ncRNA 11674 Mm.275831 NM_007438 ENSMUSG00000030695 Aldoa Aldo-1|Aldo1 - 7|7 F3 aldolase A, fructose-bisphosphate protein-coding 102467271 n-TCgca11 n-Tc11 - 6 B2.3|6 nuclear encoded tRNA cysteine 11 (anticodon GCA) tRNA 111947 Pltr12 - - - polytropic long terminal repeat containing proviral locus 12 other 20316 Mm.20755 NM_009143 ENSMUSG00000002064 Sdf2 AI853825 - 11|11 B5 stromal cell derived factor 2 protein-coding 62034 D2Mit523 - - 2 28.97 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 523 unknown 21406 Mm.171615 NM_011544 ENSMUSG00000032228 Tcf12 A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20 - 9 D|9 39.85 cM transcription factor 12 protein-coding 14385 Mm.30087 NM_008063 ENSMUSG00000032114 Slc37a4 100043178|G6PT|G6pt1|GSD-1b|mG6PT - 9|9 A5.2 solute carrier family 37 (glucose-6-phosphate transporter), member 4 protein-coding 360121 D17Jcs124 - - - DNA segment, Chr 17, John C. Schimenti 124 unknown 100042512 Gm20924 - - Y|Y predicted gene, 20924 protein-coding 102632793 Gm49316 - - 3 G3|3 predicted gene 49316 pseudo 105244413 Mm.469954 XM_011239920 4930445K14Rik - - 2|2 H3 RIKEN cDNA 4930445K14 gene ncRNA 208665 Mm.262635 NM_145364 ENSMUSG00000038641 Akr1d1 - - 6|6 B1 aldo-keto reductase family 1, member D1 protein-coding 100417125 Mm.391428 NR_038018 ENSMUSG00000112503 Gm18409 - - 10|10 D1 mediator of cell motility 1 pseudogene pseudo 107859 Tel19p - - - telomeric sequence, Chr 19, centromere end protein-coding 105243136 Mm.421272 XR_870175 Gm39139 Gm45858 - 8 A1.3|8 predicted gene, 39139 ncRNA 102639726 Gm35969 - - 15|15 predicted gene, 35969 pseudo 102631650 XR_384639 Gm29936 - - 16 A1|16 predicted gene, 29936 ncRNA 108167323 XR_001785322 Gm45937 - - 6 D1|6 predicted gene, 45937 ncRNA 433091 Mm.328925 NM_001034885 ENSMUSG00000043286 Pnpla1 - - 17|17 A3.3 patatin-like phospholipase domain containing 1 protein-coding 75910 Mm.483845 NR_040604 ENSMUSG00000102368 4930590L20Rik - - 1|1 F RIKEN cDNA 4930590L20 gene ncRNA 102635303 XR_001778748 Gm32678 - - 8 A3|8 predicted gene, 32678 ncRNA 100861997 Gm21387 - - Y|Y predicted gene, 21387 protein-coding 258180 Mm.377371 NM_001011862 ENSMUSG00000096714 Olfr699 MOR283-10P - 7|7 E3 olfactory receptor 699 protein-coding 258659 Mm.377622 NM_146665 ENSMUSG00000091873 Olfr732 MOR241-1 - 14|14 C1 olfactory receptor 732 protein-coding 28106 Mm.294870 NM_080837 ENSMUSG00000019579 Mydgf D17Wsu104e|Il25|Ly6elg - 17 D|17 29.2 cM myeloid derived growth factor protein-coding 102633523 LOC102633523 - - 2 E1 cytochrome c oxidase subunit 7B, mitochondrial pseudogene pseudo 100124662 Trbv6 - - 6|6 B1 T cell receptor beta variable 6 pseudo 117010 Datd - - - dopamine transporter density unknown 100040249 Mm.328678 Krtap6-3 HGTpII.3 - 16|16 C3.3 keratin associated protein 6-3 protein-coding 246193 Ltnr4 - - - lentinan responsive 4 protein-coding 105243702 Gm39525 - - X|X predicted gene, 39525 ncRNA 359894 DXMgc16 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 16 unknown 28272 D10Jhu33 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 33 unknown 258904 Mm.330377 NM_146902 ENSMUSG00000075102 Olfr1221 MOR233-3 - 2|2 E1 olfactory receptor 1221 protein-coding 100035913 Imrfq1 - - - immune response to Factor IX QTL 1 unknown 243819 Mm.258670 NM_172894 ENSMUSG00000052296 Ppp6r1 2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115 - 7|7 A1 protein phosphatase 6, regulatory subunit 1 protein-coding 73337 1700042D02Rik - - 9|9 RIKEN cDNA 1700042D02 gene protein-coding 97248 C80875 - - - expressed sequence C80875 unknown 78132 4930440F04Rik - - 12|12 RIKEN cDNA 4930440F04 gene protein-coding 100109 Mm.471818 AI427012 - - - expressed sequence AI427012 unknown 723893 NR_029784 ENSMUSG00000065519 Mir10a Mirn10a|miR-10a|mmu-mir-10a - 11|11 D microRNA 10a ncRNA 74926 Mm.441796 XR_381804 4930473H19Rik - - 12|12 D2 RIKEN cDNA 4930473H19 gene ncRNA 114601 Mm.210447 NM_053252 ENSMUSG00000024937 Ehbp1l1 G430002G23Rik - 19|19 A EH domain binding protein 1-like 1 protein-coding 75190 4930535B17Rik - - 5|5 RIKEN cDNA 4930535B17 gene protein-coding 723907 NR_029756 ENSMUSG00000065418 Mir322 Mirn322|mmu-mir-322 - X|X A5 microRNA 322 ncRNA 72958 Mm.53849 NM_028402 ENSMUSG00000090659 Zfp493 2900054J07Rik|Rslcan12 - 13|13 B3 zinc finger protein 493 protein-coding 319243 Mm.382981 9430062P05Rik - - 9|9 RIKEN cDNA 9430062P05 gene protein-coding 408062 Mm.391409 NM_001024626 ENSMUSG00000061371 Zfp873 - - 10|10 C1 zinc finger protein 873 protein-coding 384081 XM_357407 Gm13249 - - 4|4 E1 predicted gene 13249 protein-coding 18197 Mm.3304 NM_008741 ENSMUSG00000020297 Nsg2 P19 - 11|11 A4 neuron specific gene family member 2 protein-coding 56523 Mm.42166 NM_019938 ENSMUSG00000031727 Pmfbp1 1700016D22Rik|F77|Stap - 8 D3|8 57.05 cM polyamine modulated factor 1 binding protein 1 protein-coding 359961 DXMgc98 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 98 unknown 105246583 XR_877880 Gm41854 - - 19 C3|19 predicted gene, 41854 ncRNA 102638216 XR_379646 Gm34829 - - 9 E1|9 predicted gene, 34829 ncRNA 103973 Rn7s12 Rn7s-12 - - 7S RNA 12 scRNA 100034918 Lmblgq4 - - 10 35.26 cM limb length QTL 4 unknown 105246575 LOC105246575 - - 19 C3 40S ribosomal protein S10 pseudogene pseudo 110472 Tcra-V7.3 - - - T cell receptor alpha, variable 7.3 other 74577 Mm.458319 NM_029010 ENSMUSG00000026200 Glb1l 4833408P15Rik - 1|1 C4 galactosidase, beta 1-like protein-coding 101056092 Gm29777 - - 13 A5|13 predicted gene, 29777 pseudo 74733 5033425B01Rik - - 9|9 RIKEN cDNA 5033425B01 gene protein-coding 102638951 XR_377726 Gm35386 - - 6 B3|6 predicted gene, 35386 ncRNA 60754 D2Mit41 - - 2 51.21 cM DNA segment, Chr 2, Massachusetts Institute of Technology 41 unknown 217262 Mm.291459 NM_147220 ENSMUSG00000041797 Abca9 D630040K07Rik - 11|11 E1 ATP-binding cassette, sub-family A (ABC1), member 9 protein-coding 59056 Mm.479678 NM_021292 ENSMUSG00000029122 Evc - - 5|5 B3 EvC ciliary complex subunit 1 protein-coding 102633811 XR_387821 Gm31545 Gm45298 - 8 C2|8 predicted gene, 31545 ncRNA 75259 Mm.33928 NR_045063 ENSMUSG00000096971 4930556M19Rik 1700009D01Rik|C130022M03Rik - 15|15 A1 RIKEN cDNA 4930556M19 gene ncRNA 100503670 Mm.277897 NM_016980 ENSMUSG00000058558 Rpl5 U21RNA - 5 F|5 52.23 cM ribosomal protein L5 protein-coding 102637253 XR_375829 Gm34118 - - 3 F1|3 predicted gene, 34118 ncRNA 61413 D5Mit182 - - 5 20.2 cM DNA segment, Chr 5, Massachusetts Institute of Technology 182 unknown 382450 Mm.422788 NR_033630 ENSMUSG00000098065 Gm5177 EG382450 - 10|10 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 320864 Mm.440509 NM_001033397 ENSMUSG00000075570 Krt26 4732407F15Rik|Krt25b - 11|11 D keratin 26 protein-coding 241226 Mm.329997 NM_001001309 ENSMUSG00000026768 Itga8 AI447669 - 2 A1|2 9.12 cM integrin alpha 8 protein-coding 102467357 n-TMcat9 n-Tm9 - 13 A3.1|13 nuclear encoded tRNA methionine 9 (anticodon CAT) tRNA 77790 A930006J02Rik - - 14|14 A3 RIKEN cDNA A930006J02 gene unknown 100125594 Mm.381283 NR_131976 ENSMUSG00000087495 LOC100125594 - - 2 G3 uncharacterized LOC100125594 ncRNA 100504069 Mm.391412 NR_038017 ENSMUSG00000085723 Gm15915 - - 10 C2|10 48.6 cM predicted gene 15915 ncRNA 16667 Mm.14046 NM_010663 ENSMUSG00000035557 Krt17 K17|Krt1-17 - 11 D|11 63.44 cM keratin 17 protein-coding 111404 Emv39 Emv-39 - - endogenous ecotropic MuLV 39 other 102465611 NR_105978 ENSMUSG00000098655 Mir7011 Gm27677|mmu-mir-7011 - 3|3 F1 microRNA 7011 ncRNA 93685 Mm.248237 NM_053103 ENSMUSG00000025192 Entpd7 1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2 - 19|19 C3 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 100316749 NR_035420 ENSMUSG00000080573 Mir467f Mirn467f|mmu-mir-467f - 11 B3|11 42.86 cM microRNA 467f ncRNA 77487 C330004M20Rik - - 16|16 RIKEN cDNA C330004M20 gene protein-coding 102634370 Gm29373 - - Y|Y predicted gene 29373 ncRNA 329152 Mm.132150 NM_172655 ENSMUSG00000042807 Hecw2 A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301 - 1|1 C1.1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 665097 Mm.425948 Gm7489 EG665097 - 15|15 D1 predicted gene 7489 unknown 69225 Mm.64911 NM_026995 ENSMUSG00000031505 Naxd 0710008K08Rik|2810407E01Rik|Carkd - 8|8 A1.1 NAD(P)HX dehydratase protein-coding 217648 Mm.341586 NM_001025605 ENSMUSG00000047227 Gm527 - - 12|12 C1 predicted gene 527 protein-coding 20583 Mm.4272 NM_011415 ENSMUSG00000022676 Snai2 Slug|Slugh|Snail2 - 16 A1|16 10.07 cM snail family zinc finger 2 protein-coding 102636999 XR_380276 Gm33916 - - 10 B2|10 predicted gene, 33916 ncRNA 102634772 XR_373533 Gm32275 - - 1 C4|1 predicted gene, 32275 ncRNA 111723 Mpmv41 Mpmv-41 - - modified polytropic murine leukemia virus 41 other 15357 Mm.316652 NM_008255 ENSMUSG00000021670 Hmgcr HMG-CoAR|Red - 13 D1|13 50.65 cM 3-hydroxy-3-methylglutaryl-Coenzyme A reductase protein-coding 102635927 XR_382498 Gm33140 - - 13 B1|13 predicted gene, 33140 ncRNA 102467247 n-TRccg2 n-Tr8 - 17 A3.3|17 nuclear encoded tRNA arginine 2 (anticodon CCG) tRNA 100039662 Gm2361 - - 15|15 C ribosomal protein L15 pseudogene pseudo 100045211 Gm16082 - - 14|14 predicted gene 16082 pseudo 102638777 Gm35259 - - 9|9 predicted gene, 35259 ncRNA 62107 D12Mit54 - - 12 22.76 cM DNA segment, Chr 12, Massachusetts Institute of Technology 54 unknown 233033 Mm.54120 NM_175021 ENSMUSG00000109336 Samd4b BC042901 - 7|7 B1 sterile alpha motif domain containing 4B protein-coding 628061 XR_879249 Rps13-ps4 EG628061|Gm6834 - 8|8 E1 ribosomal protein S13, pseudogene 4 pseudo 17827 Mm.280943 NM_013604 ENSMUSG00000064068 Mtx1 Gcap6|Mtx - 3 F1|3 39.01 cM metaxin 1 protein-coding 13300 Del(2)35H Del35H - - deletion, Chr 2, Harwell 35 other 53041 CA7.15 - - - DNA segment, CA7.15 unknown 105246341 XR_877063 Gm41642 - - 17 E4|17 predicted gene, 41642 ncRNA 109425 Bslm1 - - - basal locomotor activity 1 unknown 105242768 XR_869424 Gm38896 - - 6 F2|6 predicted gene, 38896 ncRNA 102639254 XR_386264 Gm35607 - - 18 E1|18 predicted gene, 35607 ncRNA 100043499 Gm4479 - - 14 C3|14 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 pseudogene pseudo 68854 Mm.33225 NM_026853 ENSMUSG00000031382 Asb11 1110067L12Rik|1600009D24Rik - X|X F5 ankyrin repeat and SOCS box-containing 11 protein-coding 100039032 XM_017318710 Gm20794 - - Y|Y C2 predicted gene, 20794 protein-coding 110198 Mm.482154 NM_025337 ENSMUSG00000028743 Akr7a5 0610025K21Rik|Afar|Afar1|Akr7a2 - 4 D3|4 70.64 cM aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase) protein-coding 93751 Hspe1-ps4 Cpn10-rs5 - 4|4 D3 heat shock protein 1 (chaperonin 10), pseudogene 4 pseudo 100036071 Nrtim2 - - - neurotensin immunoreactivity 2 unknown 100093678 Trnae-uuc - - - transfer RNA glutamic acid (anticodon UUC) tRNA 12951 Mm.441911 NM_007770 ENSMUSG00000041578 Crx Crx1 - 7 A2|7 8.6 cM cone-rod homeobox protein-coding 108168699 LOC108168699 - - - vomeronasal type-1 receptor 4-like pseudo 20387 Mm.46062 NM_023134 ENSMUSG00000021789 Sftpa1 SP-A|Sftp-1|Sftp1 - 14 B|14 22.36 cM surfactant associated protein A1 protein-coding 101055898 LOC101055898 - - X F1 cell division cycle protein 20 homolog pseudogene pseudo 668186 Gm9029 EG668186 - 10|10 D2 cell division cycle 5-like pseudogene pseudo 114739 Iba3 - - 8 30.94 cM induction of brown adipocytes 3 unknown 111843 Iapls3-12 - - - intracisternal A particle, lymphocyte specific 3-12 other 260396 Pain1 Auto - 15 30.11 cM pain 1 unknown 108168440 Gm14727 - - X A7.2|X 36.05 cM predicted gene 14727 pseudo 102638083 XR_384716 Ccdc188 - - 16 A3 coiled-coil domain containing 188 protein-coding 28057 Mm.414546 D16Ium11e D16Ium11 - - DNA segment, Chr 16, Indiana University Medical 11, expressed unknown 28155 D16Ium8e D16Ium8 - - DNA segment, Chr 16, Indiana University Medical 8, expressed unknown 258447 Mm.271375 NM_146455 ENSMUSG00000075086 Olfr1241 MOR231-14 - 2|2 E1 olfactory receptor 1241 protein-coding 108167935 XR_001780352 LOC108167935 - - 11 E1 uncharacterized LOC108167935 ncRNA 381792 Mm.333223 NR_040292 ENSMUSG00000101655 2310040G24Rik - - 6|6 D1 RIKEN cDNA 2310040G24 gene ncRNA 108638 Snord21 Rnu21|U21|U21RNA - 5|5 small nucleolar RNA, C/D box 21 snoRNA 111815 Iapls1-15 - - - intracisternal A particle, lymphocyte specific 1-15 other 76813 Mm.383251 NM_133972 ENSMUSG00000002343 Armc6 2410153K17Rik|AW554412 - 8|8 B3.3 armadillo repeat containing 6 protein-coding 108058 Mm.255822 NM_023813 ENSMUSG00000053819 Camk2d 2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII - 3|3 G1 calcium/calmodulin-dependent protein kinase II, delta protein-coding 791308 Mm.249645 Gm9933 - - - predicted gene 9933 unknown 102632985 XR_387498 Gm30922 - - 1 G3|1 predicted gene, 30922 ncRNA 100043270 Trav12n-2 EG667677|Gm16460 - 14|14 C2 T cell receptor alpha variable 12N-2 other 18779 Mm.5092 NM_008867 ENSMUSG00000054580 Pla2r1 Pla2-r|Pla2g1br|Pla2r - 2|2 C1.1-C1.2 phospholipase A2 receptor 1 protein-coding 102636510 XR_001778291 Gm33555 - - 7 F3|7 predicted gene, 33555 ncRNA 66355 Mm.290802 NM_025508 ENSMUSG00000000253 Gmpr 2310004P21Rik|AV028449|GMPR 1 - 13|13 A5 guanosine monophosphate reductase protein-coding 102637631 Gm34393 - - 15|15 predicted gene, 34393 ncRNA 76987 Mm.236127 NM_029826 ENSMUSG00000025421 Hdhd2 0610039H12Rik|3110052N05Rik - 18|18 E3 haloacid dehalogenase-like hydrolase domain containing 2 protein-coding 258052 Olfr753-ps1 MOR256-38|Olfr92-L - 17|17 B1 olfactory receptor 753, pseudogene 1 pseudo 414084 Mm.117558 NM_001001495 ENSMUSG00000044162 Tnip3 9030611K07Rik|ABIN-3|LIND - 6|6 C1 TNFAIP3 interacting protein 3 protein-coding 102633747 XR_385900 Gm31499 - - 17 E4|17 predicted gene, 31499 ncRNA 100124294 Traj58 Gm16771 - 14|14 C2 T cell receptor alpha joining 58 other 22166 Mm.260618 NM_011660 ENSMUSG00000028367 Txn1 ADF|AW550880|Trx1|Txn - 4 B3|4 31.87 cM thioredoxin 1 protein-coding 14672 Mm.260925 NM_010301 ENSMUSG00000034781 Gna11 Dsk7|E430025L19 - 10 C1|10 39.72 cM guanine nucleotide binding protein, alpha 11 protein-coding 68786 Mm.401845 1110059G02Rik - - 15|15 RIKEN cDNA 1110059G02 gene protein-coding 668230 Gm9056 EG668230 - 19|19 C2 galactose-3-O-sulfotransferase 1 pseudogene pseudo 102639001 XR_389678 Gm35425 - - 3 A3|3 predicted gene, 35425 ncRNA 27208 NR_001277 ENSMUSG00000065628 Snord33 Rnu33|U33 - 7|7 B3 small nucleolar RNA, C/D box 33 snoRNA 231903 Mm.291286 NM_001039678 ENSMUSG00000075543 Urad EG231903|Prhoxnb - 5|5 G3 ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase protein-coding 96877 C78142 - - - expressed sequence C78142 unknown 18814 Mm.3258 NM_011120 ENSMUSG00000021348 Prl7d1 Ghd19|PLF-RP|PRP|Plfr - 13|13 A3.1 prolactin family 7, subfamily d, member 1 protein-coding 108165616 LOC108165616 - - 16 B5 Boc Hedgehog-responsive enhancer biological-region 100417977 Gm16077 Gm300 - 15|15 A1 caspase recruitment domain family, member 6 pseudogene pseudo 114695 Skull8 E6.2|L6|QTL-S6.2 - - skull morphology 8 unknown 116930 Stia2 - - - serum transfer induced arthritis 2 unknown 239759 Mm.33192 NM_153404 ENSMUSG00000044626 Liph C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1 - 16 B1|16 12.95 cM lipase, member H protein-coding 100862296 Gm21626 - - Y|Y predicted gene, 21626 protein-coding 100151772 XM_011247724 Srsx Gm17503 - X|X E3 serine-rich, secreted, X-linked protein-coding 101055839 Gm29728 - - 8 A2|8 predicted gene, 29728 pseudo 20420 Mm.20908 NM_009168 ENSMUSG00000039154 Shd AI413439 - 17|17 D src homology 2 domain-containing transforming protein D protein-coding 665111 Gm7497 EG665111 - 18|18 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 93707 Mm.247203 NM_033582 ENSMUSG00000023036 Pcdhgc4 - - 18|18 B3 protocadherin gamma subfamily C, 4 protein-coding 224907 Mm.293973 NM_144858 ENSMUSG00000007603 Dus3l AI662135|AW557805 - 17|17 D dihydrouridine synthase 3-like (S. cerevisiae) protein-coding 71534 9030408N04Rik - - 15|15 RIKEN cDNA 9030408N04 gene protein-coding 102632538 Mm.316210 XR_001783812 C230034O21Rik - - 3|3 B RIKEN cDNA C230034O21 gene ncRNA 100417781 Gm18821 - - 9|9 D splicing factor, arginine/serine-rich 7 pseudogene pseudo 677315 Gm9711 - - 7|7 F5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a), pseudogene pseudo 328872 D230038C21 - - 17|17 E4 uncharacterized protein D230038C21 protein-coding 73438 Mm.23558 NR_038180 ENSMUSG00000085580 1700061F12Rik - - 2|2 A1 RIKEN cDNA 1700061F12 gene ncRNA 21376 Mm.28689 NM_025289 ENSMUSG00000011114 Tbrg1 AA408552|AA409675|Niam|Tb-5|mFLJ00213 - 9|9 A4 transforming growth factor beta regulated gene 1 protein-coding 258187 Olfr682-ps1 MOR40-19_p|MOR40-6P|Olfr217-ps1 - 7|7 E3 olfactory receptor 682, pseudogene 1 pseudo 105243364 XR_870585 Gm39311 - - 9 A3|9 predicted gene, 39311 ncRNA 258688 Mm.271529 NM_146693 ENSMUSG00000094721 Olfr1462 MOR202-13 - 19|19 A olfactory receptor 1462 protein-coding 108167537 XR_001778581 Gm46043 - - 8 B3.3|8 predicted gene, 46043 ncRNA 100504482 Gm17184 - - 14|14 22.55 cM predicted gene 17184 pseudo 674723 Gm9628 - - 13|13 A1 predicted gene 9628 pseudo 319284 Mm.446844 A430055H19Rik - - 17|17 RIKEN cDNA A430055H19 gene protein-coding 22221 Mm.28052 NM_013699 ENSMUSG00000009741 Ubp1 Cp2b|LBP-1a|LBP-1b|NF2d9 - 9|9 F3 upstream binding protein 1 protein-coding 116605 D7Tem8 - - - DNA segment, Chr 7, Tempel 8 unknown 214505 Mm.38607 NM_172529 ENSMUSG00000035521 Gnptg 6430527N14Rik|A830081F19|AU067667|AU067744|Mdcp1|Tce7 - 17|17 A3.3 N-acetylglucosamine-1-phosphotransferase, gamma subunit protein-coding 105246551 Gm41825 - - 19|19 predicted gene, 41825 ncRNA 108168814 XR_001783547 Gm46776 - - 2 H3|2 predicted gene, 46776 ncRNA 100418254 Gm11637 - - 11|11 E1 proteasome (prosome, macropain) subunit, alpha type 1 pseudogene pseudo 676982 Gm20789 - - 13|13 A5 predicted gene, 20789 pseudo 546943 Mm.480275 NM_001166721 ENSMUSG00000096859 Vmn1r176 Gm5998 - 7 A3|7 vomeronasal 1 receptor 176 protein-coding 52159 D15Ggc1e - - - DNA segment, Chr 15, G. Consalez 1, expressed unknown 547328 Trav13n-3 EG547328|Gm6033 - 14|14 C2 T cell receptor alpha variable 13N-3 other 320705 Mm.336619 NM_177235 ENSMUSG00000042182 Bend6 B230209C24Rik - 1|1 B BEN domain containing 6 protein-coding 100039870 Gm2467 - - 10 A3|10 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 72599 Mm.71015 NM_028295 ENSMUSG00000022844 Pdia5 2700053F16Rik|AU015525|Pdir - 16|16 B3 protein disulfide isomerase associated 5 protein-coding 94224 Mm.38933 NM_053188 ENSMUSG00000038541 Srd5a2 5ART2|S5AR 2 - 17|17 E2 steroid 5 alpha-reductase 2 protein-coding 665632 Gm7722 EG665632 - X|X A4 ribosomal protein SA pseudogene pseudo 108168317 LOC108168317 - - 17 E3 nuclear transport factor 2 pseudogene pseudo 100035694 Chlq17 - - - circulating hormone level QTL 17 unknown 667388 Gm8605 EG667388 - 12 D2|12 GLE1 RNA export mediator pseudogene pseudo 22412 Mm.215161 NM_011719 ENSMUSG00000018486 Wnt9b Wnt14b|Wnt15|clf|clf1|wnt-14b|wnt-15 - 11 E1|11 67.47 cM wingless-type MMTV integration site family, member 9B protein-coding 106143 Mm.10160 NM_178647 ENSMUSG00000054604 Cggbp1 AA960172|AL023996|AW045841 - 16|16 C1.3 CGG triplet repeat binding protein 1 protein-coding 110120499 LOC110120499 - - - VISTA enhancer mm1598 biological-region 100101630 Moen2 - - - modifier of engrailed QTL 2 unknown 100042475 XM_011251084 Gm20921 - - Y|Y C3 predicted gene, 20921 protein-coding 108168537 XM_017318724 LOC108168537 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 105243210 XR_870501 Gm17576 - - 8 B3.3|8 34.43 cM predicted gene, 17576 ncRNA 244911 Mm.325849 NM_001163143 ENSMUSG00000047990 C2cd4a EG244911|Fam148a - 9|9 C C2 calcium-dependent domain containing 4A protein-coding 108343 Emv49 Emv-49 - - endogenous ecotropic MuLV 49 other 105244937 Gm40459 - - 7|7 predicted gene, 40459 protein-coding 77543 Mm.490670 NR_040615 ENSMUSG00000102674 8030442B05Rik - - 2|2 A1 RIKEN cDNA 8030442B05 gene ncRNA 171285 Mm.72168 NM_134250 ENSMUSG00000020399 Havcr2 TIM-3|Tim3|Timd3 - 11|11 B1.1 hepatitis A virus cellular receptor 2 protein-coding 228777 Mm.330667 NM_001009948 ENSMUSG00000059361 Nrsn2 Gm123|Neurensin-2 - 2|2 G3 neurensin 2 protein-coding 16478 Mm.419851 NM_010592 ENSMUSG00000071076 Jund Jund1 - 8 B3.3|8 34.15 cM jun D proto-oncogene protein-coding 76425 Mm.41464 NM_029607 ENSMUSG00000027573 Gid8 2310003C23Rik|4833420G11Rik|AI451474|Twa1 - 2|2 H4 GID complex subunit 8 protein-coding 100043509 Gm4486 - - 14|14 E4 lactate dehydrogenase A pseudogene pseudo 15461 Mm.334313 NM_008284 ENSMUSG00000025499 Hras H-ras|Ha-ras|Harvey-ras|Hras-1|Hras1|Kras2|c-H-ras|c-Ha-ras|c-rasHa|ras - 7 F5|7 86.48 cM Harvey rat sarcoma virus oncogene protein-coding 110646 Tel4q1 - - - telomeric repeat sequence, Chr 4, q arm 1 protein-coding 105245587 XR_873806 Gm41019 - - 13 C3|13 predicted gene, 41019 ncRNA 108167727 XR_001779421 Gm46157 - - 1 E4|1 predicted gene, 46157 ncRNA 100036240 Aabpr Abpr - 2 58.52 cM aberrant activation of B cell proliferation unknown 100417130 Gm18413 - - 13|13 D1 myc induced nuclear antigen pseudogene pseudo 100036277 Eae27 - - 1 68.38 cM experimental allergic encephalomyelitis susceptibility 27 unknown 108168017 XR_001780648 Gm46366 - - 12 D1|12 predicted gene, 46366 ncRNA 17691 Mm.290941 NM_010831 ENSMUSG00000024042 Sik1 Hrt-20|Msk|Sik|Sik-1|Snf1lk - 17 B1|17 17.25 cM salt inducible kinase 1 protein-coding 387250 Mirlet7h Mirnlet7h - - microRNA let7h ncRNA 112115 Bgeq9 - - 11 42.94 cM body growth early QTL 9 unknown 321018 Mm.297023 NR_002861 Serpina4-ps1 KALps|Klst - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1 pseudo 105246189 Gm41522 - - 17 A1|17 clusterin-like protein 1 pseudo 102632187 XR_387485 Gm30327 - - 1 G3|1 predicted gene, 30327 ncRNA 99543 Mm.211535 NM_133859 ENSMUSG00000027848 Olfml3 2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3 - 3|3 F2.2 olfactomedin-like 3 protein-coding 102634015 Gm31703 - - 17|17 predicted gene, 31703 ncRNA 100418123 Gm19016 - - 14|14 B NSA2 ribosome biogenesis homolog pseudogene pseudo 102634342 Gm31947 - - 14|14 predicted gene, 31947 pseudo 102637179 XR_382519 Gm34058 - - 13 B1|13 predicted gene, 34058 ncRNA 27704 D1Dau10 - - - DNA segment, Chr 1, DA Underhill 10 unknown 230257 Mm.331640 NM_144904 ENSMUSG00000028382 Ptbp3 5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1 - 4|4 B3 polypyrimidine tract binding protein 3 protein-coding 12890 Mm.268902 NM_009946 ENSMUSG00000025867 Cplx2 921-L|AI413745|AW492120|Gm34843 - 13|13 B1 complexin 2 protein-coding 77024 2700057C20Rik - - 7|7 RIKEN cDNA 2700057C20 gene protein-coding 435480 Gm5674 - - 16 C1.1|16 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 21459 Tcp10-ps T66C-g3|Tcp-10ps - - t-complex protein 10, pseudogene pseudo 62075 D10Mit59 - - 10 28.84 cM DNA segment, Chr 10, Massachusetts Institute of Technology 59 unknown 20665 Mm.276739 NM_011437 ENSMUSG00000033006 Sox10 Dom|Sox21|gt - 15 E1|15 37.7 cM SRY (sex determining region Y)-box 10 protein-coding 105969 AU021782 - - - expressed sequence AU021782 unknown 664795 Gm7343 EG664795 - 3|3 A1 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene pseudo 100124463 NR_030546 ENSMUSG00000077847 Mir105 Mirn105|mmu-mir-105 - X A7.3|X microRNA 105 ncRNA 100502831 Mm.486158 NM_001205032 ENSMUSG00000095970 Gm19402 - - 10 C1|10 39.72 cM predicted gene, 19402 protein-coding 67448 Mm.313938 NM_026162 ENSMUSG00000026748 Plxdc2 1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r - 2|2 A2-A3 plexin domain containing 2 protein-coding 77266 9430013L17Rik - - 10|10 RIKEN cDNA 9430013L17 gene protein-coding 102631852 Gm30079 - - 6|6 predicted gene, 30079 protein-coding 19363 Mm.341756 NM_009014 ENSMUSG00000059060 Rad51b AI553500|R51H2|Rad51l1|mREC2 - 12|12 C3 RAD51 paralog B protein-coding 100043869 Gm14494 - - 2|2 H1 translocase of outer mitochondrial membrane 20 homolog pseudogene pseudo 13395 Mm.4873 NM_010056 ENSMUSG00000029755 Dlx5 AI385752 - 6 A1|6 2.83 cM distal-less homeobox 5 protein-coding 328545 Mm.59156 B830032F12 - - 15|15 D1 uncharacterized protein B830032F12 protein-coding 97244 Mm.426490 C80140 - - - expressed sequence C80140 protein-coding 18511 Mm.5035 NM_011041 ENSMUSG00000001497 Pax9 Pax-9 - 12 C1|12 24.53 cM paired box 9 protein-coding 100047966 Gm15725 - - 16 B3|16 actin, beta, cytoplasmic (Actb) pseudogene pseudo 70936 Mm.158500 XR_141405 ENSMUSG00000031194 4931400O07Rik - - X|X A6 RIKEN cDNA 4931400O07 gene ncRNA 106851 AA516602 - - - expressed sequence AA516602 unknown 102640036 Gm36205 - - 4|4 predicted gene, 36205 ncRNA 102634934 XR_376266 Gm32399 - - 3 H4|3 predicted gene, 32399 ncRNA 194268 Mm.266907 NM_177573 ENSMUSG00000044730 9930104L06Rik C1orf109 - 4|4 D2.2 RIKEN cDNA 9930104L06 gene protein-coding 492928 Tmevd6 - - - Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 6 unknown 102632172 XR_376690 Gm30318 - - 4 B1|4 predicted gene, 30318 ncRNA 27047 Mm.390589 NM_012050 ENSMUSG00000048368 Omd OSAD|SLRR2C - 13|13 A5 osteomodulin protein-coding 52593 D18Ertd390e - - - DNA segment, Chr 18, ERATO Doi 390, expressed unknown 78449 Mm.262195 NR_037693 ENSMUSG00000041789 2700046A07Rik A330042I05Rik - 18|18 E1 RIKEN cDNA 2700046A07 gene ncRNA 105246587 XR_877897 Gm41857 - - 19 C3|19 predicted gene, 41857 ncRNA 105243527 Mm.414455 Gm17141 - - 9|9 58.03 cM predicted gene 17141 ncRNA 100040105 Gm2602 - - 5|5 E1 zinc finger, BED domain containing 4 pseudogene pseudo 100043931 LOC100043931 - - - vomeronasal V1r-type receptor pseudogene pseudo 100040696 Mm.341612 Gm2912 - - 12 C2|12 predicted gene 2912 protein-coding 107534 Bkm2 Bkm-2 - - banded krait minor satellite DNA 2 other 107747 Mm.30035 NM_027406 ENSMUSG00000030088 Aldh1l1 1810048F20Rik|FDH|Fthfd|Neut2 - 6|6 D1 aldehyde dehydrogenase 1 family, member L1 protein-coding 102690 Mm.350299 AU024245 - - - expressed sequence AU024245 unknown 102639542 XR_384840 Gm35833 - - 16 B3|16 predicted gene, 35833 ncRNA 13808 Mm.251322 NM_007933 ENSMUSG00000060600 Eno3 Eno-3|MSE - 11 B3|11 43.21 cM enolase 3, beta muscle protein-coding 105244773 XR_868516 Gm40325 - - 5 G1.1|5 predicted gene, 40325 ncRNA 102635077 Gm32503 - - 15|15 predicted gene, 32503 ncRNA 62723 D18Mit143 - - 18 55.78 cM DNA segment, Chr 18, Massachusetts Institute of Technology 143 unknown 100418061 Gm18975 - - 8|8 C3 glutamate-ammonia ligase (glutamine synthetase) pseudogene pseudo 102634401 Mm.235021 NR_110447 ENSMUSG00000085015 LOC102634401 - - 2 C3 uncharacterized LOC102634401 ncRNA 109867 Ly39 Ly-39 - - lymphocyte antigen 39 protein-coding 102632824 Mm.489391 Gm26820 - - 3|3 predicted gene, 26820 ncRNA 62618 D13Mit181 - - 13 23.85 cM DNA segment, Chr 13, Massachusetts Institute of Technology 181 unknown 100418007 Gm18943 - - 7|7 E1 WW domain containing adaptor with coiled-coil pseudogene pseudo 102637761 Gm34491 - - X|X predicted gene, 34491 protein-coding 20631 Snrp1c-ps1 mC-[y]15 - 7|7 F3 U1 small nuclear ribonucleoprotein 1C, pseudogene 1 pseudo 21307 T(X;4)7Rl T7Rl - - reciprocal translocation, Chr X and 4, Russell 7 other 78711 C630043D15Rik - - 18|18 RIKEN cDNA C630043D15 gene protein-coding 258228 Mm.377386 NM_001011525 ENSMUSG00000057464 Olfr1415 MOR103-12 - 1|1 D olfactory receptor 1415 protein-coding 77011 Mm.28132 NM_029835 ENSMUSG00000046591 Ticrr 5730590G19Rik|BC028450|Lrrk1 - 7|7 D2 TOPBP1-interacting checkpoint and replication regulator protein-coding 102636354 XR_381803 Gm33444 - - 12 D2|12 predicted gene, 33444 ncRNA 107756 Pscr1 Pscr-1 - - corneal resistance to P. aeruginosa 1 protein-coding 102635148 Gm32560 - - 1|1 predicted gene, 32560 pseudo 666146 Gm7948 EG666146 - 8|8 B3.3 Luc7 homolog-like pseudogene pseudo 102640181 Gm36310 - - 9|9 predicted gene, 36310 ncRNA 259088 Mm.422750 NM_147084 ENSMUSG00000066263 Olfr639 MOR12-1 - 7|7 E3 olfactory receptor 639 protein-coding 100416110 Gm17921 - - 17|17 E1.2 nucleophosmin 1 pseudogene pseudo 105244577 Gm40170 - - 3|3 predicted gene, 40170 ncRNA 675306 Gm12579 - - 4|4 B3 predicted gene 12579 pseudo 665653 Gm7731 EG665653 - 16|16 A1 ribosomal protein pseudogene pseudo 241074 Gm13750 Ppia-ps1_583.1 - 1|1 C2 peptidyl-prolyl cis-trans isomerase A pseudogene 1_583.1 pseudo 243025 Mm.297688 XM_017321209 ENSMUSG00000037913 Tmem156 Col28a1|Gm446 - 5|5 C3.1 transmembrane protein 156 protein-coding 633457 Mm.390467 Ighv3-5 C72-3A1|EG633457|Gm7112 - 12|12 F1 immunoglobulin heavy variable 3-5 other 16238 In(11)2Dn-p In(11)2Dn|In2Dn - - inversion, Chr 11, Davisson 2, proximal other 19799 NR_002841 Rn4.5s - - 6 B2.3|6 22.94 cM 4.5S RNA rRNA 52487 D7Arn1e - - - DNA segment, Chr 7, Norman Arnheim 1, expressed unknown 100036178 Bw27 Bw21 - - body weight QTL 27 unknown 259020 Mm.377792 NM_147018 ENSMUSG00000075188 Olfr1056 MOR186-2 - 2|2 D olfactory receptor 1056 protein-coding 18032 Mm.9394 NM_010906 ENSMUSG00000001911 Nfix CTF|NF-I/X|NF1-X|NFI-X - 8 C2|8 41.02 cM nuclear factor I/X protein-coding 107478 Emv69 - - - endogenous ecotropic MuLV 69 protein-coding 100417648 Gm18737 - - 17|17 B1 vacuolar protein sorting 72 pseudogene pseudo 102634447 XR_386814 Gm32028 - - 19 D2|19 predicted gene, 32028 ncRNA 435235 Gm5650 EG435235 - 7|7 F4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 13363 Mm.324688 NM_007857 ENSMUSG00000023000 Dhh C78960 - 15 F1|15 55.05 cM desert hedgehog protein-coding 102634296 XR_387015 ENSMUSG00000045010 LOC102634296 - - X D uncharacterized protein CXorf49 homolog protein-coding 435499 Gm5679 - - 17|17 A1 kinesin family member 2C pseudogene pseudo 278167 Mm.473682 NM_001114678 ENSMUSG00000094861 Gm5072 EG278167 - X|X C2 predicted gene 5072 protein-coding 76728 Mm.76920 NR_131046 ENSMUSG00000108676 1700123J17Rik Gm44875 - 7|7 F3 RIKEN cDNA 1700123J17 gene ncRNA 27576 D5Buc17 5F3.SP6 - 5 37.65 cM DNA segment, Chr 5, Bucan 17 unknown 628525 Vmn1r-ps48 EG628525|Gm6892 - 7|7 A1 vomeronasal 1 receptor, pseudogene 48 pseudo 22661 Mm.392667 NM_011749 ENSMUSG00000022811 Zfp148 2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148 - 16 B3|16 23.93 cM zinc finger protein 148 protein-coding 74747 Mm.21697 NM_029083 ENSMUSG00000020108 Ddit4 5830413E08Rik|AA415483|REDD1|Rtp801|dig2 - 10|10 B4 DNA-damage-inducible transcript 4 protein-coding 61236 D1Mit267 - - 1 67.71 cM DNA segment, Chr 1, Massachusetts Institute of Technology 267 unknown 102638521 LOC102638521 - - - 60S ribosomal protein L23a protein-coding 100034883 Lgth9 - - 17 17.25 cM body length 9 unknown 69761 Mm.333053 NM_001081273 ENSMUSG00000029813 1600015I10Rik AI429442|Doxl1 - 6|6 B2.3 RIKEN cDNA 1600015I10 gene protein-coding 105245756 Gm41155 - - 14|14 predicted gene, 41155 ncRNA 257989 Olfr1073-ps1 MOR188-6P - 2|2 D olfactory receptor 1073, pseudogene 1 pseudo 105246074 Gm41422 - - 16|16 predicted gene, 41422 ncRNA 12623 Mm.22720 NM_021456 ENSMUSG00000057074 Ces1g Ces-1|Ces1|Ses-1 - 8 C5|8 45.29 cM carboxylesterase 1G protein-coding 258584 Mm.377579 NM_146591 ENSMUSG00000075167 Olfr1101 MOR179-3 - 2|2 D olfactory receptor 1101 protein-coding 435692 Gm14214 - - 2|2 H1 ribosomal protein L7A pseudogene pseudo 114256 Manz1 QTL-C2.1 - - mandible size 1 unknown 229759 Mm.54183 NM_153157 ENSMUSG00000027965 Olfm3 B230206G02Rik - 3|3 F3 olfactomedin 3 protein-coding 17238 Mdac - - - modifier of Dac unknown 102632468 XR_385630 Gm30532 - - 17 C|17 predicted gene, 30532 ncRNA 69886 Mm.391799 2610002J23Rik AI746380|AW546936|C230060L03Rik - 11|11 RIKEN cDNA 2610002J23 gene protein-coding 102639752 Mm.213016 XR_387097 Gm15241 - - X F4|X 73.95 cM predicted gene 15241 ncRNA 75424 Mm.271252 NM_029281 ENSMUSG00000069743 Zfp820 2610036F08Rik - 17|17 A3.3 zinc finger protein 820 protein-coding 101056070 Gm29772 - - 5|5 predicted gene, 29772 protein-coding 20393 Mm.28405 NM_011361 ENSMUSG00000019970 Sgk1 Sgk - 10|10 A3 serum/glucocorticoid regulated kinase 1 protein-coding 56645 Tcea1-ps1 - - 15|15 E3 transcription elongation factor A (SII) 1, pseudogene 1 pseudo 112422 Mm.327194 NM_145078 ENSMUSG00000066000 Zfp979 2610305D13Rik|Ssm1b - 4|4 E1 zinc finger protein 979 protein-coding 62389 D16Mit109 - - 16 5.23 cM DNA segment, Chr 16, Massachusetts Institute of Technology 109 unknown 258674 Mm.377633 NM_146679 ENSMUSG00000067525 Olfr1427 MOR239-4 - 19|19 A olfactory receptor 1427 protein-coding 71962 Mm.7852 NM_028022 ENSMUSG00000020424 Gatsl3 2410008K03Rik|Castor1 - 11|11 A1 GATS protein-like 3 protein-coding 77408 9530013L04Rik - - 6|6 RIKEN cDNA 9530013L04 gene protein-coding 109280063 LOC109280063 Mm627 - - VISTA enhancer mm627 biological-region 493120 Bsbob2 - - - BSB obesity 2 unknown 317755 Mm.11934 NM_174877 ENSMUSG00000063935 Zar1 - - 5|5 C3.2 zygote arrest 1 protein-coding 108168971 XR_001784386 Gm46866 - - 4 C7|4 predicted gene, 46866 ncRNA 14118 Mm.271644 NM_007993 ENSMUSG00000027204 Fbn1 AI536462|B430209H23|Fib-1|Tsk - 2 F1|2 61.38 cM fibrillin 1 protein-coding 319513 Mm.482539 NM_178762 ENSMUSG00000037773 Pced1a A930025D01Rik|AI480484|Fam113a - 2|2 F1 PC-esterase domain containing 1A protein-coding 77859 D730050C22Rik - - 4|4 RIKEN cDNA D730050C22 gene protein-coding 227325 Mm.292560 NM_152915 ENSMUSG00000036766 Dner A930026D19Rik|BET|Bret - 1|1 C5 delta/notch-like EGF repeat containing protein-coding 102638905 LOC102638905 - - X F3 60S acidic ribosomal protein P0-like pseudo 105244342 Gm39971 - - 2|2 predicted gene, 39971 ncRNA 102636805 Gm33776 - - 5|5 predicted gene, 33776 ncRNA 102636702 XR_379816 ENSMUSG00000101411 Gm28111 - - 9 F1|9 predicted gene 28111 ncRNA 114148 Szs11 - - - seizure susceptibility 11 unknown 102634233 Gm38461 - - 15|15 predicted gene, 38461 ncRNA 102640047 XR_381606 Gm36213 - - 12 C1|12 predicted gene, 36213 ncRNA 100384868 Mm.247203 NM_001174154 ENSMUSG00000103458 Gm37013 Pcdha4-g - 18 B2-B3|18 predicted gene, 37013 protein-coding 13024 Mm.482089 NM_007796 ENSMUSG00000044258 Ctla2a Ctla-2a - 13 B2|13 32.56 cM cytotoxic T lymphocyte-associated protein 2 alpha protein-coding 15445 Mm.439709 NM_008277 ENSMUSG00000029445 Hpd 4HPPD|Fla|Flp|Hppd|Laf - 5 F|5 62.82 cM 4-hydroxyphenylpyruvic acid dioxygenase protein-coding 62209 D16Mit37 - - 16 23.68 cM DNA segment, Chr 16, Massachusetts Institute of Technology 37 unknown 240023 Mm.242315 NM_001034866 ENSMUSG00000073460 Pnldc1 Gm313 - 17|17 A1 poly(A)-specific ribonuclease (PARN)-like domain containing 1 protein-coding 75233 Mm.234322 NR_108050 ENSMUSG00000100221 4930532M18Rik - - 1|1 G3 RIKEN cDNA 4930532M18 gene ncRNA 100035859 W3q16 - - - weight 3 weeks QTL 16 unknown 110614 Mrv6 - - - mouse AIDS virus-related proviral gene 6 protein-coding 105244709 XR_872471 Gm40267 - - 12 A1.1|12 predicted gene, 40267 ncRNA 140500 Mm.219591 NM_207223 ENSMUSG00000029033 Acap3 Centb5|Kiaa1716-hp|mKIAA1716 - 4 E2|4 87.66 cM ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 protein-coding 61729 D5Mit264 - - 5 71.94 cM DNA segment, Chr 5, Massachusetts Institute of Technology 264 unknown 67713 Mm.274266 NM_026332 ENSMUSG00000027679 Dnajc19 1810055D05Rik|AA959924|Tim14 - 3 A3|3 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 85192 D1Mit460 - - - DNA Segment, Chr 1, Massachusetts Institute of Technology 460 unknown 100126227 Mm.404073 NR_045911 ENSMUSG00000087698 Gm13031 - - 4|4 D3 predicted gene 13031 ncRNA 94244 Mm.26037 NM_033571 ENSMUSG00000040013 Fkbp6 1700008G22Rik|36kDa|AU017274|D5Ertd724e|FKBP-36|FKBP-6 - 5 G2|5 75.11 cM FK506 binding protein 6 protein-coding 28088 Mm.9257 NM_145422 ENSMUSG00000001783 Rtcb AI255213|AI463255|D10Wsu52e|FAAP|HSPC117 - 10 C1|10 41.81 cM RNA 2',3'-cyclic phosphate and 5'-OH ligase protein-coding 67969 2700080J24Rik - - 7|7 RIKEN cDNA 2700080J24 gene protein-coding 11504 Mm.1421 NM_009621 ENSMUSG00000022893 Adamts1 ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1 - 16 C3.3|16 48.2 cM a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1 protein-coding 12846 Mm.100940 NM_007744 ENSMUSG00000000326 Comt Comt1|D16Wsu103e|D330014B15Rik - 16 A3|16 11.4 cM catechol-O-methyltransferase protein-coding 108606 Iap3rc14 - - - intracisternal A-type particle, U3 region, SINE repeat c-14 other 102636824 XR_382593 Gm33787 - - 13 B3|13 predicted gene, 33787 ncRNA 75276 Mm.257373 NM_172420 ENSMUSG00000034683 Ppp1r1c 4930565M23Rik|4930579P15Rik - 2|2 C3 protein phosphatase 1, regulatory (inhibitor) subunit 1C protein-coding 108169167 Gm46974 - - 6 F1|6 thymosin beta-10 pseudogene pseudo 102640729 Gm21845 - - Y|Y predicted gene, 21845 protein-coding 100035008 Fmgty1 - - 1 50.84 cM femur geometry 1 unknown 105244733 XR_868379 Gm15796 - - 5 B3|5 20.61 cM predicted gene 15796 ncRNA 620570 Gm6162 EG620570 - 3|3 A1 ring finger 111 pseudogene pseudo 100042275 Mm.427352 NM_001243024 ENSMUSG00000094860 Btbd35f27 Gm3763 - X A1.1|X BTB domain containing 35, family member 27 protein-coding 72976 2900064K03Rik - - 5|5 RIKEN cDNA 2900064K03 gene protein-coding 622367 Rpl31-ps5 EG622367|Gm6318 - 5|5 A3 ribosomal protein L31, pseudogene 5 pseudo 53620 Mm.440321 NM_016872 ENSMUSG00000073002 Vamp5 AF119384|Camp - 6|6 C1 vesicle-associated membrane protein 5 protein-coding 69161 Mm.228619 NM_026968 ENSMUSG00000063019 Manbal 1810024K12Rik|AI836500 - 2|2 H1 mannosidase, beta A, lysosomal-like protein-coding 100124562 Vmn2r-ps67 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 67 pseudo 68149 Mm.127378 NM_026580 ENSMUSG00000021203 Otub2 2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2 - 12|12 E OTU domain, ubiquitin aldehyde binding 2 protein-coding 100303744 Mm.429851 NM_001164787 ENSMUSG00000068893 Sprr2a2 - - 3|3 F1 small proline-rich protein 2A2 protein-coding 105246968 Mm.414541 XR_880592 Gm20636 - - 5 F|5 54.7 cM predicted gene 20636 ncRNA 668157 Gm12261 - - 11|11 B1.3 high mobility group box 1-like pseudogene pseudo 100042869 Mm.447260 Gm4081 - - 1 C1.3|1 predicted gene 4081 unknown 102636011 XR_389159 Gm38482 - - 11 E2|11 predicted gene, 38482 ncRNA 70218 Mm.32084 NM_197959 ENSMUSG00000051378 Kif18b 3000004C01Rik - 11|11 E1 kinesin family member 18B protein-coding 106007486 Halr1os1 - - - Hoxa adjacent long noncoding RNA 1, opposite strand 1 ncRNA 110207 Nel1 Nel-1 - - CML-detected lymphocyte antigen protein-coding 171508 Mm.41593 NM_133930 ENSMUSG00000030284 Creld1 AI843811|i11E7 - 6 E3|6 52.77 cM cysteine-rich with EGF-like domains 1 protein-coding 381409 Mm.330860 NM_198656 ENSMUSG00000039155 Cdh26 Gm1010 - 2|2 H4 cadherin-like 26 protein-coding 791335 Mm.86507 Gm9914 - - - predicted gene 9914 protein-coding 78211 Mm.373850 4930558N11Rik - - 7 B3|7 RIKEN cDNA 4930558N11 gene protein-coding 100036475 Hfib1 - - 15 29.03 cM hepatic fibrogenesis 1 unknown 382265 XM_006528431 ENSMUSG00000094620 Cldn34c3 EG382265|Gm5167 - X|X E3 claudin 34C3 protein-coding 791275 Mm.445078 Gm9885 - - - predicted gene 9885 unknown 66317 Mm.28437 NM_023191 ENSMUSG00000061559 Wdr61 2700038L12Rik|2810418I05Rik|REC14 - 9|9 A5.3 WD repeat domain 61 protein-coding 100316664 NR_130323 ENSMUSG00000077834 Mir669d Mirn669d|mmu-mir-669d - 2 A1|2 8.22 cM microRNA 669d ncRNA 72876 Mm.393972 2900009J20Rik - - 12|12 RIKEN cDNA 2900009J20 gene protein-coding 73528 Mm.76825 1700081N11Rik - - 12|12 RIKEN cDNA 1700081N11 gene protein-coding 665162 Gm15754 EG665162 - 5 F|5 predicted gene 15754 pseudo 236930 Mm.31911 NM_146235 ENSMUSG00000051220 Ercc6l BC004701|D330021P09Rik - X|X D excision repair cross-complementing rodent repair deficiency complementation group 6 like protein-coding 73584 Mm.442491 NR_045934 ENSMUSG00000101051 1700100L14Rik - - 13|13 C1 RIKEN cDNA 1700100L14 gene ncRNA 105245567 XR_873702 Gm41008 - - 13 C3|13 predicted gene, 41008 ncRNA 106780813 Obox4-ps7 - - 7 A1|7 oocyte specific homeobox 4, pseudogene 7 pseudo 71287 Mm.158654 NM_027749 ENSMUSG00000052955 Cpvl 4933436L16Rik|HVLP - 6|6 B3 carboxypeptidase, vitellogenic-like protein-coding 100316708 NR_035484 ENSMUSG00000087844 Mir1958 mmu-mir-1958 - 4 B1|4 26.09 cM microRNA 1958 ncRNA 666358 Vmn2r-ps72 EG666358 - 7|7 D3 vomeronasal 2, receptor, pseudogene 72 pseudo 211232 Mm.65597 NM_170673 ENSMUSG00000030270 Cpne9 A730016F12Rik|mKIAA4217 - 6|6 E3 copine family member IX protein-coding 100416702 Gm12768 - - 7|7 B1 zinc finger protein 146 pseudogene pseudo 102637240 XR_876609 Gm34107 - - 17 A2|17 predicted gene, 34107 ncRNA 246156 L1Md-Gf23 GF23 - - L1 repeat, Gf subfamily, member 23 other 102631859 XR_384349 Gm30085 Gm45465 - 15 E3|15 predicted gene, 30085 ncRNA 102633113 Gm31020 - - 4|4 predicted gene, 31020 ncRNA 668705 Gm13810 - - 2|2 E1 pyruvate kinase, muscle pseudogene pseudo 258405 Mm.358933 NM_146410 ENSMUSG00000060878 Olfr1420 MOR266-4 - 19|19 A olfactory receptor 1420 protein-coding 100502721 Mm.483737 Gm19337 - - 10|10 32.57 cM predicted gene, 19337 unknown 100041096 Mm.477435 NM_001101628 ENSMUSG00000091129 Iqcf6 - - 9 F1|9 IQ motif containing F6 protein-coding 102640890 XR_001778283 Gm36848 - - 7 F2|7 predicted gene, 36848 ncRNA 72065 Mm.43152 NM_172413 ENSMUSG00000050029 Rap2c 2010200P20Rik|AI194294|AL022976 - X|X A5 RAP2C, member of RAS oncogene family protein-coding 71637 Mm.410827 NR_045883 ENSMUSG00000115526 4930413F20Rik - - 15|15 B3.1 RIKEN cDNA 4930413F20 gene ncRNA 75808 Mm.87532 4930485G23Rik 1700038N22Rik - 2|2 E5 RIKEN cDNA 4930485G23 gene protein-coding 102640630 XR_379314 Gm36648 - - 9 A5.1|9 predicted gene, 36648 ncRNA 76560 Mm.5875 NM_133351 ENSMUSG00000030800 Prss8 2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1 - 7 F3|7 69.84 cM protease, serine 8 (prostasin) protein-coding 62809 D14Mit197 - - 14 55.74 cM DNA segment, Chr 14, Massachusetts Institute of Technology 197 unknown 112005 Hlq1 - - - heat loss QTL 1 unknown 100093658 Trnat-agu - - - transfer RNA threonine (anticodon AGU) tRNA 108168780 LOC108168780 - - 2 E2 60S ribosomal protein L37 pseudogene pseudo 544848 Mm.491144 XR_381331 Gm5784 EG544848 - 12|12 A1.2 predicted gene 5784 unknown 100035409 Chlq13 - - - circulating hormone level QTL 13 unknown 105247065 XR_880902 Gm16058 - - 5 B1|5 13.23 cM predicted gene 16058 ncRNA 73471 Mm.396240 NR_045924 ENSMUSG00000099605 1700066N21Rik - - 5|5 E1 RIKEN cDNA 1700066N21 gene ncRNA 665550 Gm20775 - - Y|Y A1 RecQ mediated genome instability 1 pseudogene pseudo 74106 Mm.227605 NM_028759 ENSMUSG00000026571 Dcaf6 1200006M05Rik|Iqwd1|PC326 - 1|1 H2.2 DDB1 and CUL4 associated factor 6 protein-coding 72404 Mm.423 NM_175180 ENSMUSG00000036769 Wdr44 2610034K17Rik|RAB11BP|RPH11 - X|X A2 WD repeat domain 44 protein-coding 108167897 XR_001780204 Gm46279 - - 11 B1.2|11 predicted gene, 46279 ncRNA 105245861 XR_001781465 Gm41249 - - 14 E4|14 predicted gene, 41249 ncRNA 667713 Gm11251 - - 4|4 C3 PRP4 pre-mRNA processing factor 4 homolog B pseudogene pseudo 102467448 n-TAagc3 n-Ta3 - - nuclear encoded tRNA alanine 3 (anticodon AGC) tRNA 14634 Mm.5098 NM_008130 ENSMUSG00000021318 Gli3 AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add - 13 A1|13 5.43 cM GLI-Kruppel family member GLI3 protein-coding 100416506 Gm18134 - - 13|13 D1 ribosomal protein S17 pseudogene pseudo 101358 Mm.125477 NM_133940 ENSMUSG00000030019 Fbxl14 AW322056|Fbx14l - 6|6 F1 F-box and leucine-rich repeat protein 14 protein-coding 210108 Mm.261514 NM_001081051 ENSMUSG00000006711 D130043K22Rik 4930451E12Rik|Kiaa0319 - 13|13 A3.1 RIKEN cDNA D130043K22 gene protein-coding 268741 Mm.246237 NM_023434 ENSMUSG00000016831 Tox4 5730589K01Rik|A630040M18|AA410149|LCP1 - 14|14 C2 TOX high mobility group box family member 4 protein-coding 105245741 Gm41140 - - 14|14 predicted gene, 41140 ncRNA 102637495 XR_389827 LOC102637495 - - - uncharacterized LOC102637495 ncRNA 105244697 Gm40257 - - 4|4 predicted gene, 40257 ncRNA 102639128 XR_382621 ENSMUSG00000113595 Gm35514 - - 13 B3|13 predicted gene, 35514 ncRNA 108168957 XR_001784308 Gm46859 - - 4 B2|4 predicted gene, 46859 ncRNA 14726 Mm.2976 NM_010329 ENSMUSG00000028583 Pdpn E11|Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha - 4|4 E1 podoplanin protein-coding 100417134 Gm18416 - - 17|17 A3.3 vomeronasal 2, receptor 121 pseudogene pseudo 74843 Mm.295241 NM_029104 ENSMUSG00000021815 Mss51 4833444M15Rik|Zmynd17 - 14|14 A3 MSS51 mitochondrial translational activator protein-coding 100504297 Mm.484835 Gm20157 - - 11|11 21.96 cM predicted gene, 20157 unknown 637237 Gm7203 EG637237 - 7|7 A1 aurora kinase C pseudogene pseudo 668107 NM_001177424 Gm13696 - - 2|2 D CWC22 spliceosome-associated protein homolog pseudogene pseudo 100316737 NR_035529 ENSMUSG00000105770 Mir664 mir-664|mmu-mir-664 - 1 H5|1 89.46 cM microRNA 664 ncRNA 22157 Mm.42102 NM_021478 ENSMUSG00000037446 Tulp1 Tulp1l - 17|17 A3.3 tubby like protein 1 protein-coding 12464 Mm.296985 NM_009837 ENSMUSG00000007739 Cct4 2610204B21Rik|A45|C78323|Cctd - 11 A3.2|11 14.25 cM chaperonin containing Tcp1, subunit 4 (delta) protein-coding 66597 Mm.491258 NM_023233 ENSMUSG00000035235 Trim13 3110001L12Rik|CAR|LEU5|RNF77|Rfp2 - 14|14 D1 tripartite motif-containing 13 protein-coding 230500 Mm.331727 NM_145549 ENSMUSG00000073791 Efcab7 mKIAA1799 - 4|4 C6 EF-hand calcium binding domain 7 protein-coding 100036238 Eae32 - - - experimental allergic encephalomyelitis susceptibility 32 unknown 321008 Mm.458832 NM_177312 ENSMUSG00000070814 Zswim9 6330408A02Rik - 7|7 A1 zinc finger SWIM-type containing 9 protein-coding 102633417 XR_377763 Gm31249 - - 6 C1|6 predicted gene, 31249 ncRNA 723827 NR_029806 ENSMUSG00000065422 Mir221 Mirn221|mir-221|mmu-mir-221 - X A1.3|X microRNA 221 ncRNA 434726 Mm.426113 NM_001085524 ENSMUSG00000078208 Fthl17b EG434726|Fthl17L1|Gm5634 - X|X A1.1 ferritin, heavy polypeptide-like 17, member B protein-coding 16367 Mm.4952 NM_010570 ENSMUSG00000055980 Irs1 G972R|IRS-1 - 1 C5|1 42.0 cM insulin receptor substrate 1 protein-coding 246313 Mm.283777 NM_144944 ENSMUSG00000050558 Prokr2 B830005M06Rik|EG-VEGRF2|Gpcr73l1|Gpr73l1|PKR2 - 2|2 F2 prokineticin receptor 2 protein-coding 100416744 Gm18223 - - 6|6 F1 zinc finger protein 248 pseudogene pseudo 100503331 NM_001195766 Gm6724 EG626954 - 18|18 B1 high mobility group nucleosomal binding domain 2 pseudogene pseudo 780800 Ighv7-2 Gm16699 - 12|12 F1 immunoglobulin heavy variable 7-2 other 320834 D130067P18Rik - - 12|12 RIKEN cDNA D130067P18 gene protein-coding 53611 Mm.258637 NM_016862 ENSMUSG00000024983 Vti1a 1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2 - 19|19 D2 vesicle transport through interaction with t-SNAREs 1A protein-coding 170750 Mm.99776 NM_133216 ENSMUSG00000025027 Xpnpep1 D230045I08Rik|sAMP - 19|19 D2 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble protein-coding 100041204 Gm3200 - - 7 E2|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 69177 1810027L02Rik - - - RIKEN cDNA 1810027L02 gene protein-coding 105247099 XR_881141 Gm42258 - - 4 A3|4 predicted gene, 42258 ncRNA 21832 Mm.3943 NM_009379 ENSMUSG00000022847 Thpo Mgdf|Ml|Mpllg|Tpo - 16 B1|16 12.51 cM thrombopoietin protein-coding 102633460 XR_388073 Gm31278 - - 8 E1|8 predicted gene, 31278 ncRNA 102636585 XR_378529 Gm33607 - - 7 F3|7 predicted gene, 33607 ncRNA 21279 T(8;16)17H T17H - - reciprocal translocation, Chr 8 and 16, Harwell 17 other 100042568 Trav13n-1 - - 14|14 C2 T cell receptor alpha variable 13N-1 other 70474 5730405A10Rik - - 2|2 A1 RIKEN cDNA 5730405A10 gene protein-coding 102636903 XR_382594 ENSMUSG00000092103 Gm17039 - - 13 B3|13 34.54 cM predicted gene 17039 ncRNA 60611 Mm.87142 NM_021899 ENSMUSG00000003154 Foxj2 Fhx - 6|6 F1-F2 forkhead box J2 protein-coding 105245348 XR_872333 Gm40820 - - 11 A4|11 predicted gene, 40820 ncRNA 111118 Odc-rs8 BRS-8|Odc-8 - - ornithine decarboxylase, related sequence 8 pseudo 102635243 XR_391530 Gm32633 Gm45055 - 7 C|7 predicted gene, 32633 ncRNA 110531 Gpx4-ps1 Gpx4-ps - 17 E3|17 50.3 cM glutathione peroxidase 4, pseudogene 1 pseudo 100041503 Gm3375 - - 7 A1|7 proteasome subunit beta type 5 precursor (proteasome epsilon chain) (Macropain epsilon chain) (multicatalytic endopeptidase complex epsilon chain) (proteasome subunit X) (proteasome chain 6) pseudo 61519 D8Mit151 - - 8 57.56 cM DNA segment, Chr 8, Massachusetts Institute of Technology 151 unknown 228787 Mm.376111 NM_001011732 ENSMUSG00000042631 Xkr7 AY534253 - 2|2 H1 X-linked Kx blood group related 7 protein-coding 76409 Mm.183491 NR_040310 ENSMUSG00000101113 1700025B11Rik - - 15|15 E1 RIKEN cDNA 1700025B11 gene ncRNA 108167507 XR_001778359 Gm46023 - - 7 F5|7 predicted gene, 46023 ncRNA 85052 D13Mit1 - - 13 3.25 cM DNA segment, Chr 13, Massachusetts Institute of Technology 1 unknown 414086 9830144P21Rik - - - RIKEN cDNA 9830144P21 gene protein-coding 13813 Mm.200692 NM_010136 ENSMUSG00000032446 Eomes C77258|TBR-2|Tbr2 - 9 70.21 cM|9 F3 eomesodermin protein-coding 85204 D10Mit297 - - 10 72.31 cM DNA Segment, Chr 10 Massachusetts Institute of Technology 297 unknown 110120509 LOC110120509 - - - VISTA enhancer mm1395 biological-region 102639410 XR_873358 Gm35733 - - 13 A5|13 predicted gene, 35733 ncRNA 100101635 Moen1 - - - modifier of engrailed QTL 1 unknown 108168034 XM_017315329 Gm46382 - - 12 F1|12 predicted gene, 46382 protein-coding 215095 Mm.31313 NM_172539 ENSMUSG00000050468 Astl 7420700F21|C87576|Sas1b - 2|2 F1 astacin-like metalloendopeptidase (M12 family) protein-coding 403185 Mm.252143 NM_001101519 ENSMUSG00000090336 4932443I19Rik A230061C02Rik|Gm1106 - 8|8 A1.1 RIKEN cDNA 4932443I19 gene protein-coding 100124448 NR_030645 ENSMUSG00000076948 Mir467e Mirn467e - 2 A1|2 microRNA 467e ncRNA 85145 D5Mit254 - - 5 30.56 cM DNA segment, Chr 5, Massachusetts Institute of Technology 254 unknown 19025 Mm.359633 NM_008906 ENSMUSG00000017760 Ctsa AU019505|PPCA|Ppgb - 2 H3|2 85.27 cM cathepsin A protein-coding 71020 Mm.44257 NM_027649 ENSMUSG00000023935 Spats1 1700011H05Rik|4933400B06Rik|Ddip|Srsp1 - 17|17 B3 spermatogenesis associated, serine-rich 1 protein-coding 102637355 XR_381688 Gm34189 - - 12 C3|12 predicted gene, 34189 ncRNA 106947 Mm.5353 NM_134135 ENSMUSG00000046822 Slc39a3 AI845814|ZIP-3|Zip3 - 10|10 C1 solute carrier family 39 (zinc transporter), member 3 protein-coding 232426 Mm.158689 NM_027784 ENSMUSG00000055594 5530400C23Rik GRP - 6|6 G1 RIKEN cDNA 5530400C23 gene protein-coding 110120446 LOC110120446 - - - VISTA enhancer mm1415 biological-region 105804842 Zrs1 Mfcs1|Zrs|Zrs/Lmbr1 - - zone of polarising activity regulatory sequence 1 biological-region 102633468 XR_384159 Gm31286 - - 15 D2|15 predicted gene, 31286 ncRNA 100036744 Fbtq6 - - - femoral bone trait QTL 6 unknown 545260 Mm.20147 NM_001038499 ENSMUSG00000036412 Arsi BC020108 - 18|18 E1 arylsulfatase i protein-coding 97562 C86345 - - - expressed sequence C86345 protein-coding 105244639 XR_867966 Gm40216 - - 4 C6|4 predicted gene, 40216 ncRNA 359873 DXMgc20 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 20 unknown 105243400 Gm39333 - - 9|9 predicted gene, 39333 ncRNA 64707 Mm.23483 NM_022724 ENSMUSG00000026646 Suv39h2 4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B - 2 A1|2 1.95 cM suppressor of variegation 3-9 2 protein-coding 13202 Mm.298947 NM_010027 ENSMUSG00000001666 Ddt C78655 - 10 C1|10 38.58 cM D-dopachrome tautomerase protein-coding 105243252 XR_879089 Gm39223 - - 8 C5|8 predicted gene, 39223 ncRNA 15945 Mm.877 NM_021274 ENSMUSG00000034855 Cxcl10 C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1 - 5 E2|5 46.57 cM chemokine (C-X-C motif) ligand 10 protein-coding 102633478 NR_155534 ENSMUSG00000085595 Gm16090 - - 18 A2|18 11.44 cM predicted gene 16090 ncRNA 22030 Mm.3399 NM_009422 ENSMUSG00000026942 Traf2 AI325259 - 2|2 A3 TNF receptor-associated factor 2 protein-coding 12390 Mm.396075 NM_016900 ENSMUSG00000000058 Cav2 AI447843 - 6|6 A2 caveolin 2 protein-coding 105242644 LOC105242644 - - 6 B2.3 40S ribosomal protein S11-like pseudo 27718 D1Dau26 - - - DNA segment, Chr 1, DA Underhill 26 unknown 193742 Mm.43745 NM_178592 ENSMUSG00000007036 Abhd16a AI326074|Bat-5|Bat5|D17H6S82E|NG26 - 17 B1|17 18.59 cM abhydrolase domain containing 16A protein-coding 258451 Mm.271379 NM_146459 ENSMUSG00000100016 Olfr1215 MOR233-13 - 2|2 E1 olfactory receptor 1215 protein-coding 102467610 n-TWcca4 n-Tw4 - 13 A3.1|13 nuclear encoded tRNA trytophan 4 (anticodon CCA) tRNA 751559 NR_030453 ENSMUSG00000095697 Mir683-1 Gm26093|Mirn683|Mirn683-1|Mirn683a|mmu-mir-683|mmu-mir-683-1 - 13 A5|13 microRNA 683-1 ncRNA 100039282 Mm.372000 Gm2136 - - 3 B|3 predicted gene 2136 protein-coding 100036122 Blct5 - - - blood cell traits 5 unknown 61346 D4Mit112 - - 4 26.27 cM DNA segment, Chr 4, Massachusetts Institute of Technology 112 unknown 627873 NM_001354576 Gm6803 - - 12 D2|12 predicted gene 6803 protein-coding 627299 Gm6743 EG627299 - X|X A6 predicted pseudogene 6743 protein-coding 492888 Cd4vts1 - - 4 46.99 cM CD4 virgin T cell subset 1 unknown 102633780 Mm.213659 XR_373393 Gm28321 - - 1 C1.1|1 predicted gene 28321 ncRNA 102636818 XR_878053 Gm33784 - - X A1.1|X predicted gene, 33784 ncRNA 109194136 LOC109194136 - - - Fgf10 intronic enhancer biological-region 61907 D2Mit450 - - 2 75.41 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 450 unknown 100502871 Mm.394485 NR_040320 Gm19424 - - 19 C3|19 35.17 cM predicted gene, 19424 ncRNA 667886 Gm8860 EG667886 - 3|3 A1 predicted gene 8860 pseudo 108420 Xmmv28 Env-28|Xmmv-28 - - xenotropic-MCF leukemia virus 28 other 404557 AL024321 - - - expressed sequence AL024321 unknown 116706 Lfp3 - - 19 3.04 cM long free running period 3 unknown 100049161 Mm.20854 NR_045944 ENSMUSG00000085918 Gm13032 - - 4 D3|4 predicted gene 13032 ncRNA 258266 Mm.377400 NM_146269 ENSMUSG00000095608 Olfr247 GA_x5J8B7TSHCU-6-512|MOR265-1 - 10|10 D3 olfactory receptor 247 protein-coding 78508 Mm.416908 NR_040666 ENSMUSG00000086284 Frmpd1os 2900093L17Rik - 4|4 B1 FERM and PDZ domain containing 1, opposite strand ncRNA 110316 Tcrb-V5 - - - T cell receptor beta, variable 5 other 58866 Mm.45380 NM_021481 ENSMUSG00000032098 Treh 2210412M19Rik - 9|9 A5.2 trehalase (brush-border membrane glycoprotein) protein-coding 101056056 XM_003945407 LOC101056056 - - 6 D1 uncharacterized LOC101056056 protein-coding 545902 Mm.188925 NM_207270 ENSMUSG00000035429 Ptprh R-PTP-H|sap-1 - 7|7 A1 protein tyrosine phosphatase, receptor type, H protein-coding 22670 Mm.34587 NM_030698 ENSMUSG00000024457 Trim26 AI462198|Zfp173|Zfp1736 - 17 B1|17 19.16 cM tripartite motif-containing 26 protein-coding 100043141 Rpl10a-ps1 Gm15451|Gm1886 - 1 C2|1 ribosomal protein L10A, pseudogene 1 pseudo 110292 Ts2 Ts-2 - - Trichinella spiralis resistance 2 unknown 100042480 Mm.232 NM_001163610 ENSMUSG00000079481 Nhsl2 1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|Gm10456 - X|X D NHS-like 2 protein-coding 100035210 Lmrq4 - - - Leishmania major resistance QTL 4 unknown 71837 Mm.17621 NM_027948 ENSMUSG00000030030 1700003E16Rik AU041756 - 6|6 C3 RIKEN cDNA 1700003E16 gene protein-coding 105243575 XR_880297 Gm39461 - - 11 E2|11 predicted gene, 39461 ncRNA 100418136 Gm14908 - - X|X E1 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 72331 2310021N16Rik - - 2|2 RIKEN cDNA 2310021N16 gene protein-coding 56565 52A6L - - - DNA segment, 52A6L unknown 382743 Gm5194 EG382743 - 13|13 A3.3 myeloid leukemia factor 2 pseudogene pseudo 51843 D2Ertd48e - - - DNA segment, Chr 2, ERATO Doi 48, expressed unknown 102637581 XR_387333 Gm34352 - - 1 E2.3|1 predicted gene, 34352 ncRNA 76941 1700014D06Rik - - - RIKEN cDNA 1700014D06 gene protein-coding 791295 Mm.483640 C030005K15Rik - - - RIKEN cDNA C030005K15 gene unknown 100416300 Gm14682 - - X|X A7.1 H3 histone, family 3B pseudogene pseudo 627569 Mm.469884 NM_001104623 ENSMUSG00000090688 Vmn2r12 EG627569|Gm6769 - 5|5 F vomeronasal 2, receptor 12 protein-coding 108167461 LOC108167461 - - 7 F3 histone H2A.Z-like pseudo 100041036 Gm11360 - - 13|13 A3.1 dynein, axonemal, heavy chain 9 pseudogene pseudo 27933 D1Nds2 - - 1 50.84 cM DNA segment, Chr 1, Nuffield Department of Surgery 2 unknown 668867 Gm9407 EG668867 - 17|17 E4 predicted gene 9407 pseudo 105244669 XR_868049 Gm40235 - - 4 D2.1|4 predicted gene, 40235 ncRNA 100862062 Gm21443 - - Y|Y predicted gene, 21443 protein-coding 108168747 XM_017319368 Gm46735 - - 2 B|2 predicted gene, 46735 protein-coding 230738 Mm.402 NM_153159 ENSMUSG00000042677 Zc3h12a BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1 - 4|4 D2.2 zinc finger CCCH type containing 12A protein-coding 105247250 Mm.212736 NR_153826 ENSMUSG00000101855 1700010N08Rik Gm42380 - 7 B3|7 RIKEN cDNA 1700010N08 gene ncRNA 626854 Mm.436630 NM_001039232 Gm38396 - - 17 A3.1|17 predicted gene, 38396 protein-coding 62288 D19Mit57 - - 19 23.67 cM DNA segment, Chr 19, Massachusetts Institute of Technology 57 unknown 360110 D17Jcs111 - - - DNA segment, Chr 17, John C. Schimenti 111 unknown 21674 Mm.377114 NM_011564 ENSMUSG00000069036 Sry Tdf|Tdy - Y|Y A1 sex determining region of Chr Y protein-coding 100040991 Gm20856 - - Y|Y predicted gene, 20856 protein-coding 100042415 Mm.235938 NR_030680 ENSMUSG00000089686 Mnd1-ps Gm3833 - 14 A1|14 Mnd1 retrotransposed pseudogene pseudo 102638466 XR_865725 Gm10522 - - 1|1 H3 predicted gene 10522 ncRNA 28163 DYzEms13 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 13 unknown 85034 D2Mit2 - - 2 4.24 cM DNA segment, Chr 2, Massachusetts Institute of Technology 2 unknown 619332 Mm.391427 NM_001033821 ENSMUSG00000074734 4933416C03Rik - - 10|10 D2 RIKEN cDNA 4933416C03 gene protein-coding 117075 Actre2 Actre2q - 2 57.65 cM activity response to ethanol 2 unknown 102635685 Mm.406594 XR_877850 Gm32960 - - 19 C3|19 predicted gene, 32960 ncRNA 22352 Mm.268000 NM_011701 ENSMUSG00000026728 Vim - - 2 A1|2 10.04 cM vimentin protein-coding 22194 Mm.4429 NM_009455 ENSMUSG00000021774 Ube2e1 UbcM3|Ubce5|ubcM2 - 14|14 A2 ubiquitin-conjugating enzyme E2E 1 protein-coding 102466239 NR_106148 ENSMUSG00000106642 Mir465d mmu-mir-465d - X|X A7.1 microRNA 465d ncRNA 100126252 Bpq21 Bpq10 - - blood pressure QTL 21 unknown 78274 NM_030077 5330430C04Rik - - 18|18 A2 RIKEN cDNA 5330430C04 gene protein-coding 110555 H2-M8-ps H2-M8 - - histocompatibility 2, M region locus 8, pseudogene pseudo 105243670 XM_017314874 Gm39501 Dbf4b - 11 E1|11 predicted gene, 39501 protein-coding 105242408 Mm.83642 XR_386593 Gm45918 - - 19 B|19 predicted gene, 45918 ncRNA 21846 Mm.4345 NM_011587 ENSMUSG00000033191 Tie1 D430008P04Rik|TIE|tie-1 - 4 D2.1|4 54.67 cM tyrosine kinase with immunoglobulin-like and EGF-like domains 1 protein-coding 27842 D10Hgu1 - - 10 67.94 cM DNA segment, Chr 10, Human Genetics Unit 1 unknown 102631911 Gm28296 - - Y|Y predicted gene 28296 ncRNA 258048 Olfr759-ps1 MOR121-4P - 17|17 B1 olfactory receptor 759, pseudogene 1 pseudo 68975 Mm.330109 NM_026896 ENSMUSG00000026799 Med27 1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e - 2 B|2 19.84 cM mediator complex subunit 27 protein-coding 545086 LOC545086 - - 15|15 A1 uncharacterized LOC545086 ncRNA 100036269 Estoq1 Estq1 - - embryo survival total QTL 1 unknown 258958 Mm.347648 NM_146956 ENSMUSG00000061489 Olfr525 MOR251-2 - 7|7 F4 olfactory receptor 525 protein-coding 102639531 XR_383327 Gm35823 - - 14 B|14 predicted gene, 35823 ncRNA 100038435 Gm10661 - - - predicted gene 10661 protein-coding 102632777 XR_379926 Gm30762 - - 9 F3|9 predicted gene, 30762 ncRNA 100416834 Gm18286 - - 11|11 C ring finger protein 185 pseudogene pseudo 208908 Mm.243679 NM_001134767 ENSMUSG00000061882 Ccdc62 AI661708|G1-485-3|Gm150|repro29 - 5|5 F coiled-coil domain containing 62 protein-coding 13472 Dp(9)12H Dp12H - - duplication, Chr 9, Harwell 12 other 114156 Taste4 - - - taste-saccharin preference 4 unknown 105243419 Gm39346 - - 9|9 predicted gene, 39346 ncRNA 110129 Cklc4 - - - chemokine locus Chromosome 4 protein-coding 108168285 XR_001781915 Gm46550 - - 16 B3|16 predicted gene, 46550 ncRNA 16734 L1Md-Tf26 - - - L1 repeat, Tf subfamily, member 26 other 108167444 XR_001778203 Gm45992 - - 7 D3|7 predicted gene, 45992 ncRNA 56403 Mm.260545 NM_019666 ENSMUSG00000032423 Syncrip 2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68 - 9|9 E3.1 synaptotagmin binding, cytoplasmic RNA interacting protein protein-coding 100035240 Mtxe3 - - - methotrextate efficacy 3 unknown 107433 Gsh5 Gsh-5 - - genomic screened homeobox 5 protein-coding 105244338 LOC105244338 - - 2 H1 cytochrome c, somatic pseudogene pseudo 108653 Mm.277939 NM_027664 ENSMUSG00000040649 Rimklb 4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags - 6|6 F1 ribosomal modification protein rimK-like family member B protein-coding 102631899 XR_877083 Gm30117 - - 17 E4|17 predicted gene, 30117 ncRNA 102467367 n-TPagg7 n-Tp7 - 7 E1|7 nuclear encoded tRNA proline 7 (anticodon AGG) tRNA 56087 Mm.261014 NM_019536 ENSMUSG00000038011 Dnah10 Dnahc10 - 5|5 F dynein, axonemal, heavy chain 10 protein-coding 71159 Mm.396063 NM_027700 ENSMUSG00000079593 4933416I08Rik - - X|X A5 RIKEN cDNA 4933416I08 gene protein-coding 329984 NM_001126315 ENSMUSG00000078511 Pramef25 Gm13109 - 4|4 E1 PRAME family member 25 protein-coding 108168089 XR_001780977 Gm46420 - - 13 B2|13 predicted gene, 46420 ncRNA 16905 Mm.243014 NM_019390 ENSMUSG00000028063 Lmna Dhe - 3 F1|3 38.84 cM lamin A protein-coding 100038948 Mm.482231 NM_001126319 ENSMUSG00000078686 Mup9 Gm14076|Mup2|Mup6 - 4 B3|4 major urinary protein 9 protein-coding 667497 Gm8667 EG667497 - 7|7 E3 predicted gene 8667 pseudo 216292 Mm.250875 NM_207522 ENSMUSG00000036009 Mettl25 - - 10|10 D1 methyltransferase like 25 protein-coding 100379143 Mm.221769 Gm9754 - - 5 F|5 57.92 cM predicted gene 9754 unknown 102640781 Gm36765 - - 16|16 predicted gene, 36765 ncRNA 100035559 Cia28 - - - collagen induced arthritis QTL 28 unknown 100041662 Gm20880 - - Y|Y predicted gene, 20880 protein-coding 108169081 XR_001785016 Gm17135 - - 5 G2|5 82.84 cM predicted gene 17135 ncRNA 78408 Mm.196512 NM_133778 ENSMUSG00000050821 Fam131a 2900046G09Rik - 16|16 B1 family with sequence similarity 131, member A protein-coding 72254 Mm.30136 NM_028170 ENSMUSG00000052794 1700030K09Rik - - 8|8 B3.3 RIKEN cDNA 1700030K09 gene protein-coding 105244761 XR_868466 Gm40314 - - 5 C3.1|5 predicted gene, 40314 ncRNA 54383 Mm.473738 NM_018774 ENSMUSG00000028796 Phc2 A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36 - 4 D2.2|4 62.12 cM polyhomeotic 2 protein-coding 105244595 XR_867791 Gm40185 - - 3 H3|3 predicted gene, 40185 ncRNA 111637 Scrd2 - - - smallest common region of deletion 2 other 100503605 Mm.288567 NM_001201391 ENSMUSG00000052305 Hbb-bs Beta-s|Hbbt1|Hbbt2 - 7 E3|7 hemoglobin, beta adult s chain protein-coding 11642 Mm.87748 NM_009650 ENSMUSG00000030344 Akap3 Prka3 - 6|6 F3 A kinase (PRKA) anchor protein 3 protein-coding 673817 Gm16479 EG668978 - X|X A1.1 voltage-dependent anion channel 1 pseudogene pseudo 62882 D11Mit233 - - 11 21.96 cM DNA segment, Chr 11, Massachusetts Institute of Technology 233 unknown 102465186 NR_105779 ENSMUSG00000098252 Mir6361 Gm27612|mmu-mir-6361 - 18|18 B1 microRNA 6361 ncRNA 102638096 XR_375181 Gm34741 - - 2 H2|2 predicted gene, 34741 ncRNA 20916 Mm.38951 NM_011506 ENSMUSG00000022110 Sucla2 4930547K18Rik|A-SCS|SCS-betaA - 14|14 D3 succinate-Coenzyme A ligase, ADP-forming, beta subunit protein-coding 21122 T(2;15)45Ad T45Ad - - reciprocal translocation, Chr 2 and 15, Adler 45 other 16776 Mm.4339 NM_001081171 ENSMUSG00000015647 Lama5 AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533 - 2 H4|2 102.7 cM laminin, alpha 5 protein-coding 67854 Mm.263706 NM_026413 ENSMUSG00000045463 Slco6b1 1700022M03Rik - 1|1 D solute carrier organic anion transporter family, member 6b1 ncRNA 102633013 XR_386793 Gm30943 - - 19 D2|19 predicted gene, 30943 ncRNA 61817 D2Mit354 - - 2 3.11 cM DNA segment, Chr 2, Massachusetts Institute of Technology 354 unknown 18554 Mm.3255 NM_008794 ENSMUSG00000035382 Pcsk7 AA959856|PC7|SPC7 - 9 A5.2|9 25.32 cM proprotein convertase subtilisin/kexin type 7 protein-coding 56374 Mm.291192 NM_029565 ENSMUSG00000028618 Tmem59 1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18 - 4 C7|4 50.12 cM transmembrane protein 59 protein-coding 654795 Mm.486218 NM_001082975 ENSMUSG00000022223 Sdr39u1 2310014G06Rik - 14|14 C3 short chain dehydrogenase/reductase family 39U, member 1 protein-coding 67655 Mm.312893 NM_026295 ENSMUSG00000033323 Ctdp1 4930563P03Rik|AW553592 - 18 E3|18 53.48 cM CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 protein-coding 99237 Mm.330674 NM_133847 ENSMUSG00000068040 Tm9sf4 AA986553|AU045326|B930079E06|mKIAA0255 - 2|2 H1 transmembrane 9 superfamily protein member 4 protein-coding 27894 D16Ium71 - - 16 44.89 cM DNA segment, Chr 16, Indiana University Medical 71 unknown 74554 9130002K18Rik - - 15|15 B3.1 RIKEN cDNA 9130002K18 gene unknown 111377 Etn1 - - - early transposon element insertion site 1 other 242864 Mm.153292 NM_178728 ENSMUSG00000044968 Napepld A530089G06|Mbldc1|NAPE-PLD - 5|5 A3 N-acyl phosphatidylethanolamine phospholipase D protein-coding 71266 4933436P19Rik - - 10|10 RIKEN cDNA 4933436P19 gene protein-coding 60699 D1Mit64 - - 1 3.67 cM DNA segment, Chr 1, Massachusetts Institute of Technology 64 unknown 108167705 Gm46142 - - 9 A3|9 60S ribosomal protein L21 pseudogene pseudo 102635602 XR_390456 Gm32893 - - 4 A5|4 predicted gene, 32893 ncRNA 100034803 Obq17 - - 1 55.79 cM obesity QTL 17 unknown 665707 Gm7753 EG665707 - 12|12 C1 pyrophosphatase (inorganic) 2 pseudogene pseudo 227541 Mm.191949 NM_177343 ENSMUSG00000039145 Camk1d A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK - 2|2 A1 calcium/calmodulin-dependent protein kinase ID protein-coding 100503463 Mm.395071 AI256396 - - 6|6 EST AI256396 unknown 67644 Mm.380451 XR_388001 4930517G24Rik - - 8|8 D3 RIKEN cDNA 4930517G24 gene ncRNA 102639045 XR_876052 Gm15564 - - 16 B3|16 25.43 cM predicted gene 15564 ncRNA 69351 Mm.65488 NM_027050 ENSMUSG00000020270 Smim23 1700008A04Rik - 11|11 A4 small integral membrane protein 23 protein-coding 102639830 Gm29073 - - Y|Y predicted gene 29073 pseudo 105246888 Gm42091 - - 11|11 predicted gene, 42091 ncRNA 100043860 Mm.389875 NM_001099329 ENSMUSG00000078753 Scgb1b24 Abpa24|Gm12769 - 7|7 B1 secretoglobin, family 1B, member 24 protein-coding 434353 Mm.411793 NR_110496 ENSMUSG00000097960 A330074K22Rik - - 8|8 E1 RIKEN cDNA A330074K22 gene ncRNA 105246168 XR_882536 Gm41502 - - 16|16 predicted gene, 41502 ncRNA 15134 Hbb-bh3 Gm15119 - 7 E3|7 54.85 cM hemoglobin beta, pseudogene bh3 pseudo 67905 Mm.23018 NM_026447 ENSMUSG00000020253 Ppm1m 2810423O19Rik|AW610647|C77250|PP2Ceta - 9|9 F1 protein phosphatase 1M protein-coding 233614 Gm4886 EG233614 - 7|7 E3 G patch domain containing 4 pseudogene pseudo 16002 Mm.3862 NM_010514 ENSMUSG00000048583 Igf2 AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2 - 7 F5|7 87.99 cM insulin-like growth factor 2 protein-coding 61002 D3Mit177 - - 3 2.27 cM DNA segment, Chr 3, Massachusetts Institute of Technology 177 unknown 667190 Gm8503 EG667190 - X A7.3|X predicted gene 8503 pseudo 22643 Mm.4417 NM_009542 ENSMUSG00000055240 Zfp101 AI316498|AI325003 - 17|17 B1 zinc finger protein 101 protein-coding 100527 AA517641 - - - expressed sequence AA517641 unknown 380924 Mm.26456 NM_001030294 ENSMUSG00000022026 Olfm4 GC1|GW112|Gm296|Gm913|OlfD|pPD4 - 14|14 D3 olfactomedin 4 protein-coding 668448 Gm9173 EG668448 - 3|3 F2.1 predicted gene 9173 pseudo 214779 Mm.191846 NM_173387 ENSMUSG00000044296 Zfp879 Znf879 - 11|11 B1.3 zinc finger protein 879 protein-coding 100628604 NR_039597 ENSMUSG00000092738 Mir5135 mir-5135|mmu-mir-5135|mu-mir-5135 - 12 C3|12 33.73 cM microRNA 5135 ncRNA 641247 Mm.342177 Ighv1-33 Gm16693 - 12|12 F2 immunoglobulin heavy variable 1-33 pseudo 270118 Mm.116898 NM_173776 ENSMUSG00000031925 Maml2 5930431H10|BC032967 - 9|9 A1 mastermind like transcriptional coactivator 2 protein-coding 21083 T(14E4or5;16B5)225Dn T(14;16)225Dn|T225Dn - - reciprocal translocation, Chr 14, cytogenetic band E4or5; and Chr 16, cytogenetic band B5, Davisson 225 other 12988 Mm.21974 NM_007783 ENSMUSG00000032312 Csk AW212630|p50CSK - 9 B|9 31.18 cM c-src tyrosine kinase protein-coding 69221 Mm.270874 NR_030738 ENSMUSG00000086841 2410006H16Rik - - 11|11 B2 RIKEN cDNA 2410006H16 gene ncRNA 105246937 XR_880486 Gm42131 - - 5 E4|5 predicted gene, 42131 ncRNA 433485 Mm.330649 NM_001085521 ENSMUSG00000074736 Syndig1 AW123113|DSPC2|Gm14134|H2C20orf39|Tmem90b - 2 G3|2 synapse differentiation inducing 1 protein-coding 16518 Mm.4951 NM_008425 ENSMUSG00000041695 Kcnj2 IRK1|Kcnf1|Kir2.1 - 11 E2|11 75.23 cM potassium inwardly-rectifying channel, subfamily J, member 2 protein-coding 237859 Mm.156195 NM_001012309 ENSMUSG00000037958 Nsrp1 8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70 - 11|11 B5 nuclear speckle regulatory protein 1 protein-coding 105246232 Gm41544 - - 17|17 predicted gene, 41544 ncRNA 628781 Gm6916 EG628781 - 7 F3|7 70.13 cM coiled-coil domain containing 72 pseudogene pseudo 105243178 Gm39169 - - 8|8 predicted gene, 39169 ncRNA 382221 Mm.295937 NM_001033470 ENSMUSG00000073130 Gm1141 Pasd1 - X|X A7.3 predicted gene 1141 ncRNA 112032 Lwq8 - - - liver weight QTL 8 unknown 114622 Mobq6 Mob6 - - multigenic obesity QTL 6 unknown 102637718 XR_866910 Gm34458 - - 2 H1|2 predicted gene, 34458 ncRNA 102465197 NR_105797 ENSMUSG00000098401 Mir6377 Gm27416|mmu-mir-6377 - 3|3 D microRNA 6377 ncRNA 624454 Gm6506 EG624454 - 15|15 E1 predicted gene 6506 pseudo 102633870 XR_386567 Gm31594 - - 19 A|19 predicted gene, 31594 ncRNA 100035287 Ath37 - - 6 53.83 cM atherosclerosis 37 unknown 22073 Mm.425318 NM_011645 ENSMUSG00000071519 Prss3 MTG|TRY4|Tb|Try3 - 6|6 B1 protease, serine 3 protein-coding 100124363 Traj26 Gm16818 - 14|14 C2 T cell receptor alpha joining 26 other 110625 H2-T20 H-2T20 - - histocompatibility 2, T region locus 20 protein-coding 13436 Mm.89772 NM_010068 ENSMUSG00000027478 Dnmt3b MmuIIIB - 2|2 H1 DNA methyltransferase 3B protein-coding 258840 Mm.223264 NM_146843 ENSMUSG00000075170 Olfr1097 MOR206-2 - 2|2 D olfactory receptor 1097 protein-coding 104677 Mm.444467 AW610836 - - - expressed sequence AW610836 unknown 102633065 XR_374346 Gm13470 - - 2 B|2 27.59 cM predicted gene 13470 ncRNA 13508 Mm.102437 NM_031174 ENSMUSG00000050272 Dscam 4932410A21Rik - 16 C4|16 57.02 cM DS cell adhesion molecule protein-coding 404435 Olfr848-ps1 GA_x5J8B7W6RL5-13451244-13452122|MOR149-4_p - 9|9 A2 olfactory receptor 848, pseudogene 1 pseudo 269328 Mm.32566 NM_172979 ENSMUSG00000050808 Muc15 4732460E09|D730046L02Rik|MUC-15 - 2|2 E3 mucin 15 protein-coding 102639709 Gm28589 - - Y|Y predicted gene 28589 ncRNA 668583 Tpt1-ps1 Gm12487|Tpt1-rs - 3 F2.2|3 44.06 cM tumor protein, translationally-controlled, pseudogene 1 pseudo 69787 Mm.237985 NM_027211 Anxa13 1810034H17Rik|AV055219 - 15 D1|15 24.66 cM annexin A13 protein-coding 234725 Mm.87487 NM_175480 ENSMUSG00000044676 Zfp612 B230354B21Rik - 8|8 D3 zinc finger protein 612 protein-coding 404235 Mm.484774 NM_207534 Mrgpra5 MrgA5 - 7|7 B3 MAS-related GPR, member A5 protein-coding 100039374 Mm.441242 NR_152161 Gm2192 Gm10590 - 4 A5|4 family with sequence similarity 205 pseudogene pseudo 492848 Pidys - - 17 19.12 cM particle-induced immune disfunction unknown 102465212 NR_105822 ENSMUSG00000099326 Mir21c Gm28013|mmu-mir-21c - 8|8 E2 microRNA 21c ncRNA 100124649 NR_030647 ENSMUSG00000094933 Mir683-2 Gm23091|Mirn683-2|Mirn683b|mmu-mir-683|mmu-mir-683-2 - 13 A5|13 microRNA 683-2 ncRNA 667678 Gm15750 EG667678 - 5|5 A1 predicted gene 15750 pseudo 652920 Gm12870 EG652920 - 4|4 C7 replication factor C (activator 1) 5 pseudogene pseudo 112377 Sle1c - - 1 94.73 cM systematic lupus erythematosus susceptibility 1c unknown 319722 Mm.103823 NR_030690 E330033B04Rik - - 15|15 F1 RIKEN cDNA E330033B04 gene ncRNA 100041559 Gm11676 - - 11|11 E2 predicted gene 11676 pseudo 105281 AU019796 - - - expressed sequence AU019796 unknown 102637016 Gm29577 - - Y|Y predicted gene 29577 protein-coding 69707 Mm.227918 NM_178378 ENSMUSG00000035578 Iqcg 2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d - 16|16 B3 IQ motif containing G protein-coding 102632502 XR_378482 Gm30560 - - 7 F3|7 predicted gene, 30560 ncRNA 328830 Mm.470939 NM_178796 ENSMUSG00000043939 A530064D06Rik Trem4|pdctrem - 17|17 C RIKEN cDNA A530064D06 gene protein-coding 99000 Mm.277148 AI481121 - - - expressed sequence AI481121 unknown 668041 XR_872053 Gm8942 EG668041 - 10|10 D2 predicted gene 8942 pseudo 78479 Mm.398318 1700119I11Rik - - 13|13 RIKEN cDNA 1700119I11 gene protein-coding 105246049 Mm.134281 Gm41408 - - 15|15 predicted gene, 41408 protein-coding 20345 Mm.332590 NM_009151 ENSMUSG00000048163 Selplg CD162|Psgl-1|Psgl1|Selp1|Selpl - 5 F|5 55.59 cM selectin, platelet (p-selectin) ligand protein-coding 70284 Mm.421842 2310040G07Rik Gm16528 - 5|5 C3.3 RIKEN cDNA 2310040G07 gene unknown 70974 Mm.440524 NM_027629 ENSMUSG00000030729 Pgm2l1 4931406N15Rik|AI553438|BM32A - 7|7 E2 phosphoglucomutase 2-like 1 protein-coding 100035743 Scon1 - - 4 20.11 cM sucrose consumption 1 unknown 629133 XR_001780570 Gm20472 EG629133|Gm6950 - 12|12 A1.3 predicted gene 20472 unknown 61142 D9Mit339 - - - DNA Segment, Chr 9 Massachusetts Institute of Technology 339 unknown 100042669 XM_011251086 Gm20934 - - Y|Y C3 predicted gene, 20934 protein-coding 73158 Mm.248843 NM_028451 ENSMUSG00000037331 Larp1 1810024J12Rik|3110040D16Rik|Larp|mKIAA0731 - 11|11 B1.3 La ribonucleoprotein domain family, member 1 protein-coding 104795667 NR_128566 ENSMUSG00000094210 Gm23450 Mir935|mmu-mir-935 - 7|7 A1 predicted gene, 23450 ncRNA 105246196 Gm41528 - - 17|17 predicted gene, 41528 ncRNA 623006 Gm6382 EG623006 - X|X F2 retinoblastoma binding protein 7 pseudogene pseudo 112361 Nidd2 - - 18 18.04 cM non-insulin-dependent diabetes mellitus 2 unknown 319655 Mm.302613 NM_176973 ENSMUSG00000033152 Podxl2 D130074J02Rik|PODLX2 - 6|6 D1 podocalyxin-like 2 protein-coding 110404 Evi24 - - - ecotropic viral integration site 24 protein-coding 60886 D7Mit69 - - 7 31.19 cM DNA segment, Chr 7, Massachusetts Institute of Technology 69 unknown 257845 Olfr542-ps1 EG257845|GA_x5J8B7W3EKE-4522784-4521912|Gm5030 - 7 F4|7 olfactory receptor 542, pseudogene 1 pseudo 77036 Mm.389069 NM_029843 ENSMUSG00000008307 1700109H08Rik - - 5|5 A1 RIKEN cDNA 1700109H08 gene protein-coding 28292 D10Jhu44 - - - DNA segment, Chr 10, Johns Hopkins University 44 unknown 70266 Mm.216089 NM_172404 ENSMUSG00000039648 Kyat1 2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI - 2|2 B kynurenine aminotransferase 1 protein-coding 112368 Alcp2 - - 11 44.0 cM alcohol preference locus 2, female specific unknown 74541 Mm.410774 NR_040503 ENSMUSG00000085252 8430437L04Rik - - 2|2 C3 RIKEN cDNA 8430437L04 gene ncRNA 66344 Mm.443421 NM_025501 ENSMUSG00000042031 Lce3b 2310007F04Rik|Sprrl6A - 3|3 F1 late cornified envelope 3B protein-coding 100035877 Gct9 - - 13 63.65 cM granulosa cell tumorigenesis 9 unknown 99512 Mm.285968 NM_181400 ENSMUSG00000040389 Wdr47 1810073M12Rik|AA552998|mKIAA0893 - 3|3 F3 WD repeat domain 47 protein-coding 105242591 XR_868766 Gm38761 - - 6 A1|6 predicted gene, 38761 ncRNA 12737 Mm.289441 NM_016674 ENSMUSG00000022512 Cldn1 AI596271 - 16|16 B2 claudin 1 protein-coding 18091 Mm.41974 NM_008700 ENSMUSG00000015579 Nkx2-5 Csx|Nkx-2.5|Nkx2.5|tinman - 17 A3.3|17 13.6 cM NK2 homeobox 5 protein-coding 116716 Ihtw1 - - X 30.06 cM interspecific hybrid testis weight 1 unknown 330122 Mm.244289 NM_203320 ENSMUSG00000029379 Cxcl3 Dcip1|Gm1960 - 5|5 E1 chemokine (C-X-C motif) ligand 3 protein-coding 791402 Mm.196721 9230104M06Rik - - - RIKEN cDNA 9230104M06 gene protein-coding 666107 Gm14623 EG666107 - X|X A5 predicted gene 14623 pseudo 219135 Mm.247007 NM_144843 ENSMUSG00000021987 Mtmr6 4022440C11Rik|AI428804|AU041072 - 14|14 D1 myotubularin related protein 6 protein-coding 75953 Mm.308084 NM_029489 ENSMUSG00000051860 Samd7 4930597A01Rik - 3|3 A3 sterile alpha motif domain containing 7 protein-coding 99500 AA511275 - - - expressed sequence AA511275 unknown 277225 Ldha-ps3 Ldh-1ps3|Ldh1-ps3 - 17|17 B2 lactate dehydrogenase A, pseudogene 3 pseudo 102632128 Gm30282 - - 2|2 predicted gene, 30282 ncRNA 100503872 Mm.383980 NR_047528 ENSMUSG00000086903 Hotair Gm16258 - 15 F3|15 58.01 cM HOX transcript antisense RNA (non-protein coding) ncRNA 27688 D11Moh15 - - - DNA segment, Chr 11, KL Mohlke 15 unknown 69549 Mm.264673 NM_001081226 ENSMUSG00000079283 2310009B15Rik - - 1|1 E4 RIKEN cDNA 2310009B15 gene protein-coding 110264 TelYp - - Y|Y telomeric sequence, Chr Y, p arm protein-coding 100418334 Gm19146 - - 14|14 E3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 pseudogene pseudo 545332 Gm5830 EG545332 - 1|1 C4 ubiquitin-conjugating enzyme E2 variant 1 pseudogene pseudo 606542 Gm6069 EG606542|Ppia-ps3_337.1 - 3|3 B peptidylprolyl isomerase A pseudogene 3_337.1 pseudo 67075 Mm.275943 NM_025952 ENSMUSG00000031232 Magt1 2410001C15Rik|2610529C04Rik|2810482I07Rik|IAG2|IAP - X|X D magnesium transporter 1 protein-coding 102632603 XR_378810 Gm30633 - - 8 A2|8 predicted gene, 30633 ncRNA 667906 Gm13649 - - 2|2 C3 proteasome (prosome, macropain) subunit, beta type 3 pseudogene pseudo 100312558 Vmn1r-ps130 - - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 130 pseudo 102652 AU015086 - - - expressed sequence AU015086 unknown 16922 Mm.391704 NM_010726 ENSMUSG00000026664 Phyh AI256161|AI265699|Lnap1|PAHX - 2|2 A1 phytanoyl-CoA hydroxylase protein-coding 258701 Mm.377642 NM_146706 ENSMUSG00000070380 Olfr401 MOR255-6 - 11|11 B5 olfactory receptor 401 protein-coding 102639598 Mm.379980 NM_029813 ENSMUSG00000074527 Gm14296 - - 2|2 H4 predicted gene 14296 protein-coding 102633826 XR_870708 Gm31557 - - 9 A5.3|9 predicted gene, 31557 ncRNA 14581 Mm.2078 NM_010278 ENSMUSG00000029275 Gfi1 AW495828|Gfi-1|Pal-1|Pal1 - 5 F|5 52.23 cM growth factor independent 1 protein-coding 71395 Mm.118845 NM_175166 ENSMUSG00000006204 5430419D17Rik - - 7|7 F3 RIKEN cDNA 5430419D17 gene protein-coding 11803 Mm.2381 NM_007467 ENSMUSG00000006651 Aplp1 - - 7 B1|7 18.32 cM amyloid beta (A4) precursor-like protein 1 protein-coding 554158 BB431852 - - - expressed sequence BB431852 protein-coding 12905 Mm.473739 NM_009950 ENSMUSG00000045867 Cradd RAIDD - 10 C2|10 49.26 cM CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 73455 Mm.414869 NR_040468 1700065J18Rik - - 1|1 H6 RIKEN cDNA 1700065J18 gene ncRNA 102639124 Gm29319 - - Y|Y predicted gene 29319 pseudo 69181 Mm.45565 NM_001014390 ENSMUSG00000028630 Dyrk2 1810038L18Rik - 10|10 D2 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 protein-coding 102640012 XR_388164 Gm36188 - - 8 E1-E2|8 predicted gene, 36188 ncRNA 105242802 LOC105242802 - - 6 G1 protein S100-A10 pseudogene pseudo 114728 Skull20 L13|QTL-S13.2 - 13 42.19 cM skull morphology 20 unknown 97255 C85052 - - - expressed sequence C85052 unknown 19694 Mm.2552 NM_011259 ENSMUSG00000079516 Reg3a AV063448 - 6 C3|6 34.76 cM regenerating islet-derived 3 alpha protein-coding 53017 CA7.2 - - - DNA segment, CA7.2 unknown 64143 Mm.27832 NM_022327 ENSMUSG00000004451 Ralb 5730472O18Rik - 1|1 E2.3 v-ral simian leukemia viral oncogene B protein-coding 112314 Char2 - - 8 48.27 cM P. chabaudi malaria resistance QTL 2 unknown 69862 Mm.488068 NM_001033151 ENSMUSG00000090925 1810064F22Rik - - 9|9 A3 RIKEN cDNA 1810064F22 gene ncRNA 52100 D11Ertd4e - - 11 75.88 cM DNA segment, Chr 11, ERATO Doi 4, expressed unknown 94223 Mm.447352 NM_033324 ENSMUSG00000022718 Dgcr8 D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306 - 16 A3|16 11.31 cM DGCR8, microprocessor complex subunit protein-coding 239502 Gm4942 EG239502 - 15|15 D1 predicted gene 4942 pseudo 61842 D19Mit77 - - 19 5.08 cM DNA segment, Chr 19, Massachusetts Institute of Technology 77 unknown 102640566 XR_390206 Gm36600 - - 4 E2|4 predicted gene, 36600 ncRNA 117204 l9Rl3 pl-3 - - lethal, Chr 9, Russell 3 protein-coding 109968 Pj1 - - - paralysis, JHMV-induced 1 unknown 258601 Mm.377587 NM_146608 ENSMUSG00000045812 Olfr984 MOR239-6 - 9|9 A5.1 olfactory receptor 984 protein-coding 102632107 XR_376616 Gm12897 - - 4 D2.2|4 57.06 cM predicted gene 12897 ncRNA 105244714 XR_868323 Gm40272 - - 5 B1|5 predicted gene, 40272 ncRNA 66840 Mm.103986 NM_025793 ENSMUSG00000025173 Wdr45b 0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l - 11 E2|11 85.24 cM WD repeat domain 45B protein-coding 100885836 NR_049197 ENSMUSG00000106228 Mir3073b mir-3073b|mmu-mir-3073b - 12|12 F1 microRNA 3073b ncRNA 14961 Mm.254067 NM_207105 ENSMUSG00000073421 H2-Ab1 AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1 - 17 B1|17 17.98 cM histocompatibility 2, class II antigen A, beta 1 protein-coding 258769 Mm.223200 NM_146773 ENSMUSG00000063764 Olfr508 MOR204-6 - 7|7 E3 olfactory receptor 508 protein-coding 100039440 Mm.460231 XR_388963 ENSMUSG00000086003 B230206L02Rik Gm11519 - 11|11 D RIKEN cDNA B230206L02 gene unknown 17395 Mm.4406 NM_013599 ENSMUSG00000017737 Mmp9 AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9 - 2 H3|2 85.27 cM matrix metallopeptidase 9 protein-coding 74367 Mm.399409 XR_877591 4931439C15Rik - - 18|18 E3 RIKEN cDNA 4931439C15 gene ncRNA 97563 C86727 - - - expressed sequence C86727 unknown 19057 Mm.439683 NM_008915 ENSMUSG00000022092 Ppp3cc Calnc|PP2BA gamma - 14|14 D2 protein phosphatase 3, catalytic subunit, gamma isoform protein-coding 105245245 Gm40724 - - 10|10 predicted gene, 40724 ncRNA 68201 Mm.181767 NM_026613 ENSMUSG00000027160 Ccdc34 2810027O19Rik|4930522P10Rik|AI596202 - 2|2 E3 coiled-coil domain containing 34 protein-coding 193286 Mm.80975 NM_177567 ENSMUSG00000045942 BC049762 4930503F14 - 11|11 B1.3 cDNA sequence BC049762 protein-coding 85160 D6Mit358 - - 6 32.46 cM DNA segment, Chr 6, Massachusetts Institute of Technology 358 unknown 114324 Pas11 - - - pulmonary adenoma susceptibility 11 unknown 105246893 XR_880315 Gm42096 - - 11 E2|11 predicted gene, 42096 ncRNA 626175 Mm.391544 NM_001178001 Gm6654 EG626175 - 6|6 G3 predicted pseudogene 6654 pseudo 78120 Mm.445892 NR_045319 4930449E18Rik - - 19|19 D2 RIKEN cDNA 4930449E18 gene ncRNA 78917 Mm.139995 NR_131014 ENSMUSG00000085761 4930455G09Rik - - 4|4 E1 RIKEN cDNA 4930455G09 gene ncRNA 100043955 Gm15028 - - X|X A1.3 predicted gene 15028 pseudo 100034993 Bmch4 - - 10 24.87 cM bone mechanical trait 4 unknown 545123 Mm.482764 NM_001104531 ENSMUSG00000068085 Cyp2d11 Cyp2d|P450-2D - 15 E1|15 38.58 cM cytochrome P450, family 2, subfamily d, polypeptide 11 protein-coding 381990 Mm.262466 NM_001033466 ENSMUSG00000075327 Zbtb2 Gm1103 - 10|10 A1 zinc finger and BTB domain containing 2 protein-coding 102631935 Gm13923 - - 2|2 56.47 cM predicted gene 13923 ncRNA 111911 Pltr2 - - - polytropic long terminal repeat containing proviral locus 2 other 102635811 XR_001784224 Gm33057 - - 4 A1|4 predicted gene, 33057 ncRNA 100038671 Mm.399571 XR_001781310 Gm10860 - - 14 D1|14 predicted gene 10860 ncRNA 105246716 XR_878581 Gm28500 - - 1 E4|1 predicted gene 28500 ncRNA 68731 Mm.186936 NM_199197 ENSMUSG00000024570 Rbfa 1110032A13Rik|AI595940 - 18|18 E3 ribosome binding factor A protein-coding 106878 Mm.273197 NM_134133 ENSMUSG00000038059 Smim3 2010002N04Rik|AI195350|AW561905|Nid67|cI-41 - 18|18 D3 small integral membrane protein 3 protein-coding 109398 Fob3 - - - F-line obesity QTL 3 unknown 19484 Rb(12.14)8Rma Rb8Rma - - Robertsonian translocation, Chr 12 and 14, Universita di Roma 8 other 70454 Mm.248212 NM_027429 ENSMUSG00000026708 Cenpl 2610300B10Rik|AW121806|AW550697|CENP-L - 1|1 H2.1 centromere protein L protein-coding 66127 Mm.278027 1110014L15Rik - - 7|7 RIKEN cDNA 1110014L15 gene unknown 268809 Gm5045 EG268809 - 15|15 D1 ribosomal protein L7 pseudogene pseudo 102633273 XR_373508 Gm31137 - - 1 C3|1 predicted gene, 31137 ncRNA 73373 Mm.9621 NM_028521 ENSMUSG00000027088 Phospho2 1700048E23Rik|AI661517|AU021728|AV006103|Phos2 - 2|2 C2 phosphatase, orphan 2 protein-coding 258995 Mm.223385 NM_146993 Olfr176 GA_x54KRFPKG5P-55043245-55042289|MOR184-8 - 16|16 C2 olfactory receptor 176 protein-coding 102635637 XR_385017 Gm32925 - - 16 C3.3|16 predicted gene, 32925 ncRNA 677205 Gm16433 EG666275 - 6|6 E1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo 12039 Mm.25848 NM_007533 ENSMUSG00000060376 Bckdha - - 7|7 A3 branched chain ketoacid dehydrogenase E1, alpha polypeptide protein-coding 100040937 Mm.359511 NM_001097980 ENSMUSG00000072100 Cldn34b1 EG546400|Gm16390 - X|X F3 claudin 34B1 protein-coding 654473 Gm7336 EG654473 - 7 B4|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 108168403 Gm46643 - - 19 A|19 uncharacterized protein C11orf98 homolog pseudogene pseudo 384185 Mm.451858 NM_206935 ENSMUSG00000063820 Arl9 1700110A09Rik - 5|5 C3.3 ADP-ribosylation factor-like 9 protein-coding 102422 AA589418 - - - expressed sequence AA589418 unknown 100125280 Vmn2r-ps16 - - 4|4 E1 vomeronasal 2, receptor, pseudogene 16 pseudo 102631971 XR_390627 LOC102631971 - - 4 B3 uncharacterized LOC102631971 ncRNA 102467229 n-TAagc6 n-Ta6 - - nuclear encoded tRNA alanine 6 (anticodon AGC) tRNA 72320 Mm.258955 NM_028197 ENSMUSG00000036955 Kif1bp 0710007C18Rik|2510003E04Rik|KBP|mKIAA1279 - 10|10 B4 KIF1 binding protein protein-coding 237926 Mm.342275 NM_001013381 ENSMUSG00000039096 Rsad1 B430319G23|BC056485 - 11|11 D radical S-adenosyl methionine domain containing 1 protein-coding 105244852 XR_872676 Gm40386 - - 12 A3|12 predicted gene, 40386 ncRNA 109877 Lyr3 - - - lymphoma resistance 3 protein-coding 107421 Idc - - - iris dysplasia with cataract unknown 76894 Mm.330451 NM_029790 ENSMUSG00000057234 Mettl15 0610027B03Rik|AI303697|AW049952|Mett5d1 - 2|2 E3 methyltransferase like 15 protein-coding 11479 Mm.308467 NM_007395 ENSMUSG00000000532 Acvr1b 6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2 - 15 F1|15 56.48 cM activin A receptor, type 1B protein-coding 100040781 XM_001475289 ENSMUSG00000096915 Btbd35f6 Gm2964 - X A3.2|X BTB domain containing 35, family member 6 protein-coding 20338 Mm.250605 NM_011344 ENSMUSG00000020964 Sel1l AW493766|Sel1h|mKIAA4137 - 12|12 D3 sel-1 suppressor of lin-12-like (C. elegans) protein-coding 545228 Mm.392172 Gm5817 - - 17 E4|17 predicted gene 5817 ncRNA 107350 Mm.6381 NM_001177351 ENSMUSG00000075010 AW112010 - - 19|19 A expressed sequence AW112010 ncRNA 19560 Rb(4.6)5Mpl Rb5Mpl - - Robertsonian translocation, Chr 4 and 6, Montpellier 5 other 105245653 XR_001781034 Gm41079 - - 13 D1|13 predicted gene, 41079 ncRNA 107551 Tel11q - - - telomeric sequence, Chr 11, q arm protein-coding 226359 Mm.337409 NM_207233 ENSMUSG00000036907 C1ql2 BC040774|CTRP10 - 1|1 E2.3 complement component 1, q subcomponent-like 2 protein-coding 71754 Mm.443024 NM_023623 ENSMUSG00000068083 Cyp2d40 1300013D18Rik|CYPIID3|P450-DB3 - 15|15 E1 cytochrome P450, family 2, subfamily d, polypeptide 40 protein-coding 61338 D3Mit206 - - 3 16.08 cM DNA segment, Chr 3, Massachusetts Institute of Technology 206 unknown 100035690 W6bw1 - - - week 6 body weight 1 unknown 192232 Mm.238043 NM_138646 ENSMUSG00000042328 Hps4 2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667 - 5 F|5 54.69 cM HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding 102635097 Gm32520 - - 7|7 predicted gene, 32520 ncRNA 52333 D7Ertd523e D7Ertd487e - 7 69.01 cM DNA segment, Chr 7, ERATO Doi 523, expressed unknown 11302 Mm.6826 NM_007377 ENSMUSG00000025375 Aatk AATYK|aatyk1|mKIAA0641 - 11|11 E2 apoptosis-associated tyrosine kinase protein-coding 111187 Odc-rs15 Odc-15 - - ornithine decarboxylase, related sequence 15 pseudo 111832673 LOC111832673 - - - albumin (Alb) 5' regulatory region biological-region 54651 Mm.483107 NM_019461 ENSMUSG00000046269 Usp27x Sfc11|Usp27 - X A1.1|X 3.31 cM ubiquitin specific peptidase 27, X chromosome protein-coding 102639646 XR_383489 Gm35908 - - 14 D1|14 predicted gene, 35908 ncRNA 104164 Lyx3 Lyx-3 - - lymphocyte antigen X 3 protein-coding 353156 Mm.268933 NM_178444 ENSMUSG00000026921 Egfl7 VE-statin|Zneu1 - 2|2 A3 EGF-like domain 7 protein-coding 665506 Mm.333026 LOC665506 - - 6|6 B1 T-cell receptor beta-2 chain C region-like other 111411 Emv52 Emv-52 - - endogenous ecotropic MuLV 52 other 110967 Sdc-ps1 Synd-ps1 - - syndecan, pseudogene 1 pseudo 105247120 XR_881212 Gm26881 - - 4 A5|4 predicted gene, 26881 ncRNA 77830 A930033M24Rik - - 6|6 RIKEN cDNA A930033M24 gene protein-coding 666327 Gm8049 EG666327 - 9|9 A4 ClpB caseinolytic peptidase B homolog pseudogene pseudo 67439 Mm.23739 NM_026156 ENSMUSG00000019470 Xab2 0610041O14Rik|AV025587 - 8 A1.1|8 1.92 cM XPA binding protein 2 protein-coding 110120551 LOC110120551 - - - VISTA enhancer mm1584 biological-region 16416 Mm.87150 NM_016780 ENSMUSG00000020689 Itgb3 CD61|GP3A|INGRB3 - 11 E1|11 67.84 cM integrin beta 3 protein-coding 98314 Mm.383401 NM_178882 ENSMUSG00000073609 D2hgdh AA408776|AA408778|AI325464 - 1|1 D D-2-hydroxyglutarate dehydrogenase protein-coding 100039720 Gm2387 - - 15 C|15 ribosomal protein 10; DNA segment, Chr X, human DXS648E; 24.6 kDa protein pseudo 110013 Lci - - - liver cell immortalization unknown 50884 Mm.25203 NM_016965 ENSMUSG00000027002 Nckap1 C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1 - 2 C3|2 48.21 cM NCK-associated protein 1 protein-coding 102637471 Gm34273 - - Y|Y predicted gene, 34273 pseudo 668754 Gm9335 EG668754 - 14 E3|14 tubulin, alpha 1B pseudogene pseudo 632241 Gm29241 - - 9|9 E3.3 predicted gene 29241 pseudo 76094 5830474E16Rik - - 1|1 RIKEN cDNA 5830474E16 gene protein-coding 100462959 Gm19254 - - 6 F1|6 57.52 cM mitochondrial ribosomal protein S36 pseudogene pseudo 432732 AK157302 - - 13|13 A3.1 cDNA sequence AK157302 pseudo 111205 Tpi-rs2 Tpi-2 - 3 E1|3 30.25 cM triosephosphate isomerase related sequence 2 pseudo 224132 Mm.24094 NM_153550 ENSMUSG00000022848 Dirc2 RCC4 - 16|16 B3 disrupted in renal carcinoma 2 (human) protein-coding 229746 Gm4859 EG229746 - 3|3 F3 ribosomal protein S4, X-linked pseudogene pseudo 100417008 Gm18358 - - 7|7 D3 vomeronasal 2, receptor 66 pseudogene pseudo 105246060 Gm41411 - - 16|16 predicted gene, 41411 protein-coding 110649 Idd7 Idd-7 - - insulin dependent diabetes susceptibility 7 protein-coding 666319 Gm8043 EG666319 - 15|15 A1 ubiquitin specific peptidase 1 pseudogene pseudo 435802 Mm.466611 NM_001100185 ENSMUSG00000084346 Cyp4a30b Cyp4a30b-ps - 4|4 D1 cytochrome P450, family 4, subfamily a, polypeptide 30b protein-coding 18261 Mm.270533 NM_033039 ENSMUSG00000029618 Ocm - - 5 G2|5 82.85 cM oncomodulin protein-coding 102637938 Gm34626 - - 2|2 predicted gene, 34626 ncRNA 21577 Tcrb TCRbeta|Tib - 6 B1|6 T cell receptor beta chain protein-coding 667928 Igkv3-9 Igk-V21-9 - 6|6 C1 immunoglobulin kappa variable 3-9 other 102633944 Gm31643 - - 9|9 predicted gene, 31643 ncRNA 21924 Mm.439921 NM_009393 ENSMUSG00000091898 Tnnc1 AI874626|TnC|cTnC|cTnI|tncc - 14 B|14 19.09 cM troponin C, cardiac/slow skeletal protein-coding 99935 Mm.370766 BB018844 - - - expressed sequence BB018844 unknown 62108 D12Mit60 - - 12 15.54 cM DNA segment, Chr 12, Massachusetts Institute of Technology 60 unknown 111255 Aprt-rs2 Aprt-ps2 - - adenine phosphoribosyl transferase, related sequence 2 pseudo 268902 Mm.171736 NM_175549 ENSMUSG00000052516 Robo2 2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568 - 16|16 C3.1 roundabout guidance receptor 2 protein-coding 102638395 XR_385215 Gm34972 - - 17 A1|17 predicted gene, 34972 ncRNA 102635888 XR_381429 ENSMUSG00000112569 Gm33111 - - 12 A3|12 predicted gene, 33111 ncRNA 73809 Mm.50508 NM_028655 ENSMUSG00000025527 Satl1 4930404K22Rik - X|X E1 spermidine/spermine N1-acetyl transferase-like 1 protein-coding 668032 Gm8934 EG668032 - 18 E2|18 60S ribosomal protein L5 pseudogene pseudo 93842 Mm.214530 NM_033608 ENSMUSG00000037995 Igsf9 644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355 - 1 H3|1 79.86 cM immunoglobulin superfamily, member 9 protein-coding 105242875 XR_880193 Gm38963 - - 11 D|11 predicted gene, 38963 ncRNA 102637119 XR_386614 Gm34012 - - 19 B|19 predicted gene, 34012 ncRNA 62705 D17Mit141 - - 17 44.88 cM DNA segment, Chr 17, Massachusetts Institute of Technology 141 unknown 67333 Mm.389329 NM_183262 ENSMUSG00000037885 Stk35 1700054C12Rik|CLIK1|Stk35l1 - 2|2 F1 serine/threonine kinase 35 protein-coding 102639911 XR_875355 Gm36112 - - 15 D1|15 predicted gene, 36112 ncRNA 100417900 Gm11860 - - 4|4 A3 predicted gene 11860 pseudo 102632513 XR_876165 Gm30569 - - 16 C3.1|16 predicted gene, 30569 ncRNA 12480 Mm.389465 NM_007640 ENSMUSG00000041750 Cd1d2 CD1.2|Cd1b|Ly-38 - 3 F1|3 37.88 cM CD1d2 antigen protein-coding 360089 D17Jcs43 - - - DNA segment, Chr 17, John C. Schimenti 43 unknown 69170 Mm.34539 NR_037569 ENSMUSG00000101970 1810026B05Rik - - 7|7 D1 RIKEN cDNA 1810026B05 gene ncRNA 77376 C030013D06Rik - - 14|14 RIKEN cDNA C030013D06 gene unknown 100418079 Gm18987 - - 10|10 D2 POC5 centriolar protein homolog pseudogene pseudo 18788 Mm.271870 NM_011111 ENSMUSG00000062345 Serpinb2 PAI-2|Planh2|ovalbumin - 1 E2.1|1 50.34 cM serine (or cysteine) peptidase inhibitor, clade B, member 2 protein-coding 105244730 XR_868360 Gm40288 - - 5 B3|5 predicted gene, 40288 ncRNA 105244490 Gm40088 - - 3|3 predicted gene, 40088 ncRNA 673743 Gm14353 - - X|X A1.1 predicted gene 14353 pseudo 108168981 XR_001784458 Gm46872 - - 4 D3|4 predicted gene, 46872 ncRNA 15285 Mm.103760 NM_019944 ENSMUSG00000001566 Mnx1 HB9|Hlxb9|MNR2 - 5|5 B1 motor neuron and pancreas homeobox 1 protein-coding 100038992 XM_003945493 ENSMUSG00000113951 Gm2001 - - 12 D2|12 predicted gene 2001 protein-coding 117221 Ap6q - - 3 43.71 cM alcohol preference 6 QTL unknown 100862092 Gm21470 - - Y|Y predicted gene, 21470 protein-coding 105245091 Gm40589 - - 12|12 predicted gene, 40589 ncRNA 110911 Mm.284503 NM_138651 ENSMUSG00000058793 Cds2 5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e - 2 F2|2 64.15 cM CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 protein-coding 102638779 XR_379651 Gm35261 - - 9 E1|9 predicted gene, 35261 ncRNA 114673 Mm.422774 NM_053265 ENSMUSG00000042360 4930433N12Rik - - 9|9 A1 RIKEN cDNA 4930433N12 gene ncRNA 620497 Gm6157 - - 6|6 C1 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 pseudogene pseudo 53753 D9Ncvs58 Irlgs1 - - DNA segment, Chr 9, National Cardiovascular Center, Shionogi 58 unknown 81907 Mm.384704 NM_178638 ENSMUSG00000042757 Tmem108 AI462967|B130017P16Rik|R74726 - 9|9 F1 transmembrane protein 108 protein-coding 98211 AA517859 - - - expressed sequence AA517859 unknown 108167867 XR_001780134 Gm46262 - - 11 B4|11 predicted gene, 46262 ncRNA 545055 Mm.378966 NM_001024714 ENSMUSG00000068289 Cma2 Mcp10 - 14|14 C3 chymase 2, mast cell protein-coding 71063 Mm.379190 NM_001033159 ENSMUSG00000039789 Zfp597 4933407K12Rik|AI462383|AI666357 - 16|16 A1 zinc finger protein 597 protein-coding 675800 Gm9655 Hspd1-5p - 8|8 C2 heat shock protein 1 (chaperonin) pseudogene 5 pseudo 574415 Mm.491077 NR_002872 Gm6042 EG574415|Kb32p|Krt89 - 15 F2|15 type II keratin Kb32P pseudo 68440 Mm.33024 NM_026725 ENSMUSG00000026544 Dusp23 1300005N15Rik|LDP-3 - 1|1 H3 dual specificity phosphatase 23 protein-coding 16440 Mm.458106 NM_080553 ENSMUSG00000042644 Itpr3 IP3R 3|Ip3r3|Itpr-3|tf - 17 A3.3|17 13.68 cM inositol 1,4,5-triphosphate receptor 3 protein-coding 52565 D12Ertd125e - - 12 25.88 cM DNA segment, Chr 12, ERATO Doi 125, expressed unknown 74471 Mm.475176 XM_017321877 4933440N22Rik - - 6|6 F1 RIKEN cDNA 4933440N22 gene protein-coding 61429 D5Mit234 - - 5 35.95 cM DNA segment, Chr 5, Massachusetts Institute of Technology 234 unknown 100093636 Trnal-uaa - - - transfer RNA leucine (anticodon UAA) tRNA 18322 Mm.246530 NM_146606 ENSMUSG00000054141 Olfr24 MOR132-1|MTPCR51 - 9|9 A2 olfactory receptor 24 protein-coding 97014 C85382 - - - expressed sequence C85382 unknown 76397 Mm.243719 NM_183117 4930455F16Rik 1700013J11Rik - 16 A1|16 RIKEN cDNA 4930455F16 gene ncRNA 16952 Mm.248360 NM_010730 ENSMUSG00000024659 Anxa1 Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1 - 19 B|19 13.83 cM annexin A1 protein-coding 230809 Mm.22778 NM_146156 ENSMUSG00000050890 Pdik1l BC027088|stk35l2 - 4|4 D3 PDLIM1 interacting kinase 1 like protein-coding 20492 Mm.4172 NM_009193 ENSMUSG00000004642 Slbp - - 5|5 B2 stem-loop binding protein protein-coding 320589 Mm.207356 9530020O07Rik - - 16|16 RIKEN cDNA 9530020O07 gene protein-coding 102641188 XR_876033 Gm38540 - - 16 B3|16 predicted gene, 38540 ncRNA 100417023 Gm18367 - - 14|14 E4 high mobility group box 3 pseudogene pseudo 105245818 XR_874818 Gm41208 - - 14 D3|14 predicted gene, 41208 ncRNA 72246 Mm.491349 XR_001780171 1700030C12Rik - - 11|11 A3.2 RIKEN cDNA 1700030C12 gene ncRNA 108168133 n-TLcaa2 Trnal-caa|n-Tl11 - 13 A3.1|13 nuclear encoded tRNA leucine 2 (anticodon CAA) tRNA 105243049 XR_869924 Gm39083 - - 7 F2|7 predicted gene, 39083 ncRNA 67974 Mm.86523 NM_026484 ENSMUSG00000024286 Ccny 1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik - 18|18 A1 cyclin Y protein-coding 102467624 n-TVcac9 n-Tv17 - 13 A3.1|13 nuclear encoded tRNA valine 9 (anticodon CAC) tRNA 245506 XM_111973 Ppp4r3c-ps EG245506|Smek3|Smek3-ps - X|X C1 protein phosphatase 4 regulatory subunit 3C, pseudogene protein-coding 382686 Mm.482969 NM_001018110 3110053B16Rik - - 12|12 A1.2 RIKEN cDNA 3110053B16 gene unknown 100039633 Gm2348 - - 15 A1|15 predicted pseudogene 2348 protein-coding 320678 Mm.129415 NM_178787 ENSMUSG00000038271 Iffo1 4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo - 6|6 F2 intermediate filament family orphan 1 protein-coding 111870 Iap3ra8 - - - intracisternal A-type particle, U3 region, SINE repeat a-8 other 100043423 Rpl35a-ps4 Gm13911 - 2|2 E3 ribosomal protein 35A, pseudogene 4 pseudo 100418203 Gm19071 - - 1|1 A5 pyridoxal-dependent decarboxylase domain containing 1 pseudogene pseudo 56794 Mm.38887 NM_019975 ENSMUSG00000021884 Hacl1 1600020H07Rik|Hpcl|Phyh2 - 14|14 B 2-hydroxyacyl-CoA lyase 1 protein-coding 102632270 XR_378590 Gm30395 - - 7 F4|7 predicted gene, 30395 ncRNA 74877 Mm.159348 4930458K08Rik - - 12|12 RIKEN cDNA 4930458K08 gene protein-coding 99922 Mm.396924 AW552393 - - - expressed sequence AW552393 protein-coding 237213 Mm.113877 NM_183427 ENSMUSG00000018589 Glra2 - - X F5|X 76.75 cM glycine receptor, alpha 2 subunit protein-coding 667150 Gm11865 - - 4|4 A2 mortality factor 4 like 2 pseudogene pseudo 378435 Mm.309589 NM_194350 ENSMUSG00000047591 Mafa RIPE3b1 - 15|15 D3 v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian) protein-coding 107173 Mm.276555 NM_207220 ENSMUSG00000024958 Gpr137 AI428855 - 19|19 A G protein-coupled receptor 137 protein-coding 102638263 LOC102638263 - - X A4 L-lactate dehydrogenase A chain pseudogene pseudo 100504250 Gm10088 - - 16 A3|16 11.78 cM ubiquitin-conjugating enzyme E2 pseudogene pseudo 19331 Mm.123866 NM_011226 ENSMUSG00000029923 Rab19 - - 6|6 B1 RAB19, member RAS oncogene family protein-coding 22121 Mm.180458 NM_009438 ENSMUSG00000074129 Rpl13a 1810026N22Rik|Tstap198-7|tum-antigen - 7 B3|7 29.14 cM ribosomal protein L13A protein-coding 108168638 XM_017318846 ENSMUSG00000096686 LOC108168638 - - Y A1 Y-linked testis-specific protein 1-like protein-coding 102640095 Mm.458187 Gm15879 - - 16|16 2.37 cM predicted gene 15879 ncRNA 102675 AU021933 - - - expressed sequence AU021933 protein-coding 73204 Mm.363770 NR_045055 ENSMUSG00000085622 3110056K07Rik 4921536K06Rik - 12|12 C2 RIKEN cDNA 3110056K07 gene ncRNA 105244666 XR_868042 Gm40232 - - 4 D2.1|4 predicted gene, 40232 ncRNA 621377 NR_033606 Aprt-ps - - 8 B3.3|8 34.43 cM adenine phosphoribosyl transferase, pseudogene pseudo 215821 Mm.40491 NM_001033258 ENSMUSG00000019852 Arfgef3 9630004D11|B930094H20Rik|BIG3|D10Bwg1379e|mKIAA1244 - 10 A3|10 7.79 cM ARFGEF family member 3 protein-coding 102634278 XR_385091 Gm31901 - - 16 C4|16 predicted gene, 31901 ncRNA 27278 Mm.440845 NM_013748 ENSMUSG00000039315 Clnk MIST - 5|5 B3 cytokine-dependent hematopoietic cell linker protein-coding 69282 Mm.373573 NM_001008547 ENSMUSG00000095040 1700001J03Rik - - 5|5 G3 RIKEN cDNA 1700001J03 gene protein-coding 108168360 Gm46610 - - 17 A3.1|17 diamine acetyltransferase 1 pseudogene pseudo 110075 Mm.136461 NM_173404 ENSMUSG00000029335 Bmp3 9530029I04Rik - 5 E3|5 48.24 cM bone morphogenetic protein 3 protein-coding 665276 XM_011251051 ENSMUSG00000102739 Gm20772 - - Y|Y A1 predicted gene, 20772 protein-coding 20670 Mm.347499 NM_009235 ENSMUSG00000041287 Sox15 - - 11 B3|11 42.86 cM SRY (sex determining region Y)-box 15 protein-coding 12806 co - - - cocked unknown 108167574 Gm46064 - - 8 E1|8 predicted gene, 46064 pseudo 664831 XM_972968 Gm7358 EG664831 - 17|17 A2 predicted gene 7358 protein-coding 105243054 XR_869940 Gm39086 - - 7 F3|7 predicted gene, 39086 ncRNA 100416081 Gm17911 - - 8|8 B1.3 nucleophosmin 1 pseudogene pseudo 12824 Mm.2423 NM_031163 ENSMUSG00000022483 Col2a1 Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856 - 15 F1|15 53.97 cM collagen, type II, alpha 1 protein-coding 75128 Mm.67085 NR_040654 ENSMUSG00000087045 4930515B02Rik - - 4|4 D3 RIKEN cDNA 4930515B02 gene ncRNA 100418103 Gm19003 - - 1|1 C3 PRP4 pre-mRNA processing factor 4 homolog pseudogene pseudo 105245221 XR_871850 Gm40705 - - 10 C1|10 predicted gene, 40705 ncRNA 102633029 XR_384364 Gm30953 - - 15 E3|15 predicted gene, 30953 ncRNA 72023 Mm.246391 NM_028061 ENSMUSG00000048796 Cyb561d1 1600010M23Rik|AI605489|AW457162 - 3|3 F2.3 cytochrome b-561 domain containing 1 protein-coding 14084 Mm.318259 NM_007983 ENSMUSG00000010517 Faf1 AA408698|Dffrx|Fam - 4 C7|4 51.33 cM Fas-associated factor 1 protein-coding 100035303 Bodwt2 - - 17 26.71 cM body weight 2 unknown 61567 DXMit116 - - X 49.58 cM DNA segment, Chr X, Massachusetts Institute of Technology 116 unknown 105244507 XR_867488 Gm40101 - - 3 F2.1|3 predicted gene, 40101 ncRNA 108235 Snrpe-ps1 - - - small nuclear ribonucleoprotein E, pseudogene 1 pseudo 11423 Mm.255464 NM_009599 ENSMUSG00000023328 Ache - - 5 G2|5 76.32 cM acetylcholinesterase protein-coding 68995 Mm.262453 NM_026902 ENSMUSG00000000355 Mcts1 1500019M23Rik|MCT-1 - X|X A3.3 malignant T cell amplified sequence 1 protein-coding 105247216 Gm42353 - - 4|4 predicted gene, 42353 ncRNA 102638491 Gm35042 - - 12|12 predicted gene, 35042 ncRNA 104170 Gtl10 - - - gene trap locus 10 unknown 112142 Afw1 - - - abdominal fat weight QTL 1 unknown 66925 Mm.10406 NM_025848 ENSMUSG00000000171 Sdhd 3110001M13Rik|AVLL5809|C78570|PRO19626 - 9|9 A5.3 succinate dehydrogenase complex, subunit D, integral membrane protein protein-coding 62199 D15Mit72 - - 15 39.98 cM DNA segment, Chr 15, Massachusetts Institute of Technology 72 unknown 77756 Mm.403756 A230101C19Rik - - 11|11 RIKEN cDNA A230101C19 gene protein-coding 109280153 LOC109280153 Mm1393 - - VISTA enhancer mm1393 biological-region 100043765 Mm.435553 NR_152203 ENSMUSG00000115111 Gm4632 - - 14 D3|14 predicted gene 4632 ncRNA 94215 Mm.26794 NM_053184 ENSMUSG00000106677 Ugt2a1 - - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide A1 protein-coding 103570 AA415038 - - - expressed sequence AA415038 protein-coding 72697 2810043O03Rik - - 9|9 RIKEN cDNA 2810043O03 gene protein-coding 100418221 Gm19079 - - 6|6 D2 proteasome (prosome, macropain) subunit, alpha type 3 pseudogene pseudo 68011 Mm.276802 NM_026506 ENSMUSG00000057278 Snrpg 2810024K17Rik|AL022803|SMG|sm-G|snRNP-G - 6|6 D1 small nuclear ribonucleoprotein polypeptide G protein-coding 100417411 Gm18597 - - 7|7 A1 ribosomal L1 domain containing 1 pseudogene pseudo 93907 D16Jhu45 313I9.SP6 - - DNA segment, Chr 16, Johns Hopkins University 45 unknown 109699 Ir5 Ir-5 - - immune response 5 unknown 74901 Mm.46675 NM_029116 ENSMUSG00000055675 Kbtbd11 2900016B01Rik|4930465M17Rik|mKIAA0711 - 8|8 A1.1 kelch repeat and BTB (POZ) domain containing 11 protein-coding 105242743 XR_869368 Gm38877 - - 6 E3|6 predicted gene, 38877 ncRNA 100416162 Gm17949 - - 17|17 D adenylate kinase 5 pseudogene pseudo 102632642 XR_875478 Lgals1-ps2 Gm17209 - 15 E1|15 37.7 cM lectin, galactose binding, soluble 1, pseudogene 2 pseudo 29846 Mm.377121 NM_019474 ENSMUSG00000110970 Olfr156 MOR262-6|OR37B|Olfr37b|mOR37b - 4|4 B1 olfactory receptor 156 protein-coding 72311 2310004O12Rik - - 16|16 RIKEN cDNA 2310004O12 gene protein-coding 109280139 LOC109280139 Mm1323 - - VISTA enhancer mm1323 biological-region 546090 Gm5913 EG546090 - 8|8 D1 Ras-GTPase-activating protein SH3-domain binding protein 1 pseudogene pseudo 432993 Gm5479 EG432993 - 17 A1|17 synaptojanin 2 binding protein pseudogene pseudo 16659 Krt31c Krt-1|Krt1 - - keratin 31 complex other 259017 Mm.377790 NM_147015 ENSMUSG00000075208 Olfr1019 MOR180-1 - 2|2 D olfactory receptor 1019 protein-coding 102632033 Gm30208 - - 8|8 predicted gene, 30208 ncRNA 100126003 Hfgi2 - - - Helicobacter felis gastric inflammation 2 unknown 56198 Mm.103615 NM_013905 ENSMUSG00000032744 Heyl Hey3|Hrt3|bHLHb33|hesr3 - 4|4 D2.2 hairy/enhancer-of-split related with YRPW motif-like protein-coding 723965 NR_029726 ENSMUSG00000092770 Mirlet7a-2 Mirnlet7a-2|let-7a-2 - 9|9 A5.1 microRNA let7a-2 ncRNA 102638695 XR_377724 Gm35195 - - 6 B3|6 predicted gene, 35195 ncRNA 227644 Mm.207460 NM_172339 ENSMUSG00000036281 Snapc4 5730436L13Rik - 2|2 A3 small nuclear RNA activating complex, polypeptide 4 protein-coding 102636175 XR_382378 Gm33315 - - 13 B1|13 predicted gene, 33315 ncRNA 619308 Mm.490456 NM_001033812 F830208F22Rik - - 18|18 E3 RIKEN cDNA F830208F22 gene ncRNA 100039848 XM_006538414 Gm2457 - - 4 A5|4 predicted gene, 2457 protein-coding 56026 D5Buc51 - - - DNA segment, Chr 5, Bucan 51 unknown 433492 Mm.330682 NM_001025574 ENSMUSG00000067996 Bpifb9b 5430413K10Rik|AI413838 - 2|2 H1 BPI fold containing family B, member 9B protein-coding 12023 Mm.261044 NM_013800 ENSMUSG00000032033 Barx2 2310006E12Rik|Barx2b - 9|9 A4 BarH-like homeobox 2 protein-coding 97649 C79818 - - - expressed sequence C79818 unknown 53085 M-04373 - - - DNA segment, M-04373 unknown 73310 1700044K19Rik - - 14|14 RIKEN cDNA 1700044K19 gene protein-coding 546182 Gm5924 - - X A1.1|X predicted gene 5924 pseudo 100041994 Gm12307 - - 11|11 B3 predicted gene 12307 pseudo 12608 Mm.439656 NM_009883 ENSMUSG00000056501 Cebpb C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6 - 2 H3|2 87.58 cM CCAAT/enhancer binding protein (C/EBP), beta protein-coding 105246508 Gm41789 - - 18|18 predicted gene, 41789 ncRNA 16439 Mm.7800 NM_010586 ENSMUSG00000030287 Itpr2 AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2 - 6 G3|6 77.7 cM inositol 1,4,5-triphosphate receptor 2 protein-coding 97476 Mm.297693 NM_001081662 ENSMUSG00000079112 Fam90a1a C86695 - 8|8 A2 family with sequence similarity 90, member A1A protein-coding 102638846 XR_389389 Gm35314 - - 5 E3|5 predicted gene, 35314 ncRNA 171567 Mm.219428 NM_138314 ENSMUSG00000026575 Nme7 D530024H21Rik|Nm23-M7|Nm23-r7 - 1|1 H2.2 NME/NM23 family member 7 protein-coding 100035498 Swq6 - - - spleen weight QTL 6 unknown 56597 236m20Sp6 - - - DNA segment, 236m20Sp6 unknown 16058 Mm.474964 Igh-V3660 - - - immunoglobulin heavy chain (V3660 family) other 70650 Mm.279427 NM_027494 ENSMUSG00000029427 Zcchc8 5730565F05Rik - 5|5 F zinc finger, CCHC domain containing 8 protein-coding 102635090 XR_375282 Gm32513 - - 2 H3|2 predicted gene, 32513 ncRNA 22083 Mm.255858 NM_009431 ENSMUSG00000005609 Ctr9 AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155 - 7 E3|7 57.98 cM CTR9 homolog, Paf1/RNA polymerase II complex component protein-coding 102637954 Gm34638 - - 12|12 predicted gene, 34638 protein-coding 70680 Mm.149413 3021401N23Rik - - 13|13 D2.1 RIKEN cDNA 3021401N23 gene protein-coding 329093 Mm.336423 NM_177834 ENSMUSG00000042501 Cpa6 9030616D13Rik - 1|1 A2 carboxypeptidase A6 protein-coding 15980 Mm.249364 NM_008338 ENSMUSG00000022965 Ifngr2 Ifgr2|Ifgt - 16 C3.3|16 53.07 cM interferon gamma receptor 2 protein-coding 50787 Mm.445777 NM_015820 ENSMUSG00000053465 Hs6st3 6OST3|HS6ST-3 - 14|14 E4 heparan sulfate 6-O-sulfotransferase 3 protein-coding 102632535 XR_388750 Gm30586 - - 11 B3|11 predicted gene, 30586 ncRNA 67432 Mm.24196 NM_026152 ENSMUSG00000025176 Hoga1 0610010D20Rik|Dhdpsl|Npl2 - 19|19 C3 4-hydroxy-2-oxoglutarate aldolase 1 protein-coding 12263 Mm.283217 NM_013484 ENSMUSG00000024371 C2 - - 17 B1|17 18.41 cM complement component 2 (within H-2S) protein-coding 231086 Mm.291463 NM_145558 ENSMUSG00000059447 Hadhb 4930479F15Rik|Mtpb|TP-beta - 5|5 B1 hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit protein-coding 102640737 XR_382641 Gm36734 - - 13 C1|13 predicted gene, 36734 ncRNA 102633165 XR_882139 Gm38451 - - 7 C|7 predicted gene, 38451 ncRNA 208638 Mm.236656 NM_144793 ENSMUSG00000032519 Slc25a38 AV019094|BC010801|appoptosin - 9|9 F4 solute carrier family 25, member 38 protein-coding 105244230 XR_866536 Gm39877 - - 2 E1|2 predicted gene, 39877 ncRNA 112204 Afw10 - - - abdominal fat weight QTL 10 unknown 21053 T(10;18)18H T18H - - reciprocal translocation, Chr 10 and 18, Harwell 18 other 109279995 LOC109279995 Mm814 - - VISTA enhancer mm814 biological-region 61899 D2Mit434 - - 2 42.18 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 434 unknown 109720 Pol9 Pol-9 - - viral polymerase 9 protein-coding 100035160 Nsila5 - - 6 7.58 cM novelty/stress induced locomotor activation 5 unknown 110513 Prdx1-rs1 - - - peroxiredoxin 1, related sequence 1 protein-coding 102632871 Gm30833 - - 12|12 predicted gene, 30833 ncRNA 102639818 XR_380591 Gm36040 - - 10 C1|10 predicted gene, 36040 ncRNA 229357 Mm.95181 NM_177346 ENSMUSG00000043441 Gpr149 9630018L10Rik|Ieda|PGR10|R35 - 3|3 E1 G protein-coupled receptor 149 protein-coding 667276 Gm8550 - - 1 C2|1 translation machinery associated 16 pseudogene pseudo 12169 Mm.504 NM_009759 ENSMUSG00000031377 Bmx Etk|Etk/Bmx|Tyro8 - X|X F5 BMX non-receptor tyrosine kinase protein-coding 103729 Mm.102205 NR_028364 AI450353 - - 11 C|11 expressed sequence AI450353 ncRNA 105246185 XR_876356 Gm41519 - - 17 A1|17 predicted gene, 41519 ncRNA 621815 Gm6261 EG621815 - 6|6 C3 mitochondrial ribosomal protein L47 pseudogene pseudo 78071 Mm.489033 5330429C05Rik - - 13|13 RIKEN cDNA 5330429C05 gene protein-coding 384954 Gm5366 EG384954 - 9|9 D tubulin, alpha 1A pseudogene pseudo 19610 Rb(7.8)12Bnr Rb12Bnr - - Robertsonian translocation, Chr 7 and 8, Universitat Bonn/Rhein 12 other 100417609 Gm16072 - - 18|18 A1 ecotropic viral integration site 5 pseudogene pseudo 15421 Mm.221179 NM_010463 ENSMUSG00000050328 Hoxc12 Hox-3.8 - 15 F3|15 58.01 cM homeobox C12 protein-coding 75263 Mm.444759 4930551O13Rik - - 2|2 RIKEN cDNA 4930551O13 gene protein-coding 229152 Gm4855 EG229152 - 3|3 A3 cullin 2 pseudogene pseudo 74996 Mm.16974 NM_133758 ENSMUSG00000059263 Usp47 4930502N04Rik|A630020C16Rik - 7|7 F1 ubiquitin specific peptidase 47 protein-coding 329919 Mm.259806 NM_177865 ENSMUSG00000034359 Skint2 A430070M19|B7S3|Skint-2 - 4 D1|4 selection and upkeep of intraepithelial T cells 2 protein-coding 108444578 LOC108444578 - - - Nr0b1 intronic regulatory region biological-region 100329138 Gm3699 100042155|Gm10274 - 10 B2|10 22.99 cM ribosomal protein L41 pseudogene pseudo 112095 Bglq6 - - - body growth late QTL 6 unknown 241764 Mm.187086 NM_001081338 ENSMUSG00000035576 L3mbtl1 C630004G01|L3mbtl|mKIAA0681 - 2|2 H2 L3MBTL1 histone methyl-lysine binding protein protein-coding 624251 XR_375938 Gm6485 EG624251 - 3 F2.2|3 predicted gene 6485 pseudo 329101 Mm.406049 NR_037998 ENSMUSG00000097744 D030040B21Rik D030040B21 - 1|1 A3 RIKEN cDNA D030040B21 gene ncRNA 80886 Mm.284592 NM_030702 ENSMUSG00000005204 Senp3 AA408656|Smt3ip|Smt3ip1 - 11|11 B3 SUMO/sentrin specific peptidase 3 protein-coding 107228250 LOC107228250 - - - origin of replication in exon 1 of Xist biological-region 102642677 XR_878111 Gm38625 - - X A6|X predicted gene, 38625 ncRNA 100312474 Mm.480295 NM_001167537 ENSMUSG00000095902 Vmn1r88 - - 7 A1|7 vomeronasal 1 receptor, 88 protein-coding 27396 L1Md-Tf19 - - - L1 repeat, Tf subfamily, member 19 other 332713 Mm.23349 NM_199312 ENSMUSG00000047841 Fndc11 1700026M20Rik - 2|2 H4 fibronectin type III domain containing 11 protein-coding 195296 Mm.425868 Trav4d-4 Gm26 - 14|14 C2 T cell receptor alpha variable 4D-4 other 100312948 Mm.475849 NM_001167584 ENSMUSG00000091248 Gm17689 Pate-g|Pate8 - 9 A4|9 20.65 cM predicted gene, 17689 protein-coding 625421 Mm.464976 XR_001778072 C230062I16Rik - - 7|7 B1 RIKEN cDNA C230062I16 gene unknown 71080 Mm.472043 Sox5os1 4933415D12Rik - 6|6 SRY (sex determining region Y)-box 5, opposite strand 1 unknown 639162 Rps15a-ps1 EG639162|Gm7263 - 10|10 D1 ribosomal protein S15A, pseudogene 1 pseudo 100034793 Hdlq11 - - 6 48.93 cM HDL QTL 11 unknown 102635511 Scgb2b9-ps Abpbg9-ps - 7 B1|7 secretoglobin, family 2B, member 9, pseudogene pseudo 18938 Mm.140 NM_008889 ENSMUSG00000056612 Ppp1r14b AOM172|PHI-1|PLCB3N|Png - 19|19 A protein phosphatase 1, regulatory (inhibitor) subunit 14B protein-coding 102634547 XR_001781999 Gm32101 - - 16 B5|16 predicted gene, 32101 ncRNA 384484 Gm5317 EG384484 - 6|6 F2 synaptotagmin binding, cytoplasmic RNA interacting protein pseudogene pseudo 61478 D7Mit139 - - 7 81.71 cM DNA segment, Chr 7, Massachusetts Institute of Technology 139 unknown 619325 Mm.7688 XM_017315296 I920046F24Rik - - 12 A1.1|12 RIKEN cDNA I920046F24 gene protein-coding 24116 Mm.332320 NM_011914 ENSMUSG00000029111 Nelfa Whsc2|Whsc2h - 5|5 B2 negative elongation factor complex member A, Whsc2 protein-coding 102635630 XR_875408 Gm32918 - - 15 D3|15 predicted gene, 32918 ncRNA 69396 Mm.45463 NM_027069 ENSMUSG00000029620 1700018F24Rik AV045857 - 5|5 G2 RIKEN cDNA 1700018F24 gene protein-coding 665726 Gm11295 - - 13|13 A3.1 predicted gene 11295 pseudo 67065 Mm.20420 NM_025945 ENSMUSG00000000776 Polr3d 2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51 - 14|14 D2 polymerase (RNA) III (DNA directed) polypeptide D protein-coding 100038728 Mm.244168 NR_046064 ENSMUSG00000072592 Gm10373 - - 15 B3.2|15 predicted gene 10373 ncRNA 62002 D8Mit339 - - 8 23.89 cM DNA segment, Chr 8, Massachusetts Institute of Technology 339 unknown 62404 D16Mit190 - - 16 46.92 cM DNA segment, Chr 16, Massachusetts Institute of Technology 190 unknown 108272 Eif4a-ps3 - - - eukaryotic translation initiation factor 4A, pseudogene 3 pseudo 664853 Gm7369 EG664853 - 1|1 A1 predicted gene 7369 pseudo 98710 Mm.198119 NM_145510 ENSMUSG00000042229 Rabif AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3 - 1|1 E4 RAB interacting factor protein-coding 100503348 Gm19649 - - 5|5 E2 eukaryotic translation initiation factor 3, subunit E pseudogene pseudo 67952 Mm.6932 NM_024214 ENSMUSG00000093904 Tomm20 1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016 - 8|8 E2 translocase of outer mitochondrial membrane 20 protein-coding 108552 Iapls2-35 - - - intracisternal A particle, lymphocyte specific 2-35 other 20726 Mm.234774 NM_011460 ENSMUSG00000054266 Serpinb9d AT2|Spi9|ovalbumin - 13 A3.3|13 13.83 cM serine (or cysteine) peptidase inhibitor, clade B, member 9d protein-coding 102467388 n-TTcgt3 n-Tt12 - 11 B5|11 nuclear encoded tRNA threonine 3 (anticodon CGT) tRNA 100035985 Azdm3 - - - Alzheimer's disease modifier 3 unknown 100101409 Pbwg1.2 - - - postnatal body weight growth 1.2 unknown 105246649 XR_878335 Gm41907 - - 1 C5|1 predicted gene, 41907 ncRNA 692185 Igkv14-134-1 cx9 - 6|6 C1 immunoglobulin kappa chain variable 14-134-1 pseudo 78242 Mm.99782 NM_030061 ENSMUSG00000061144 Spink12 9230117E20Rik - 18|18 B3 serine peptidase inhibitor, Kazal type 12 protein-coding 666320 Gm8044 EG666320 - 5|5 E3 pyruvate kinase, muscle pseudogene pseudo 100862339 Gm21655 - - 5 B1|5 predicted gene, 21655 pseudo 102638101 Gm28510 - - Y|Y predicted gene 28510 protein-coding 668793 Gm11509 - - 11|11 C predicted gene 11509 pseudo 69447 1700027A13Rik - - 8|8 RIKEN cDNA 1700027A13 gene protein-coding 677379 Gm14088 - - 2|2 E5 predicted gene 14088 pseudo 102640761 XR_376081 Gm36753 - - 3 G3|3 predicted gene, 36753 ncRNA 320073 Mm.25549 D230049E03Rik - - 12|12 RIKEN cDNA D230049E03 gene protein-coding 17719 ND4 - - - NADH dehydrogenase subunit 4 protein-coding 61545 D9Mit137 - - 9 68.53 cM DNA segment, Chr 9, Massachusetts Institute of Technology 137 unknown 102467330 n-TLaag6 n-Tl6 - 11 B1.2|11 nuclear encoded tRNA leucine 6 (anticodon AAG) tRNA 100036115 Bod2 BOD4.1 - 4 33.96 cM bone length and organs 2 unknown 110665 Tel16p - - - telomeric sequence, Chr 16, centromere end protein-coding 61165 D14Mit51 - - 14 16.09 cM DNA segment, Chr 14, Massachusetts Institute of Technology 51 unknown 55980 Mm.183042 NM_018864 ENSMUSG00000027531 Impa1 2610002K09Rik|2900059K10Rik|AI325909 - 3|3 A1 inositol (myo)-1(or 4)-monophosphatase 1 protein-coding 108167967 XR_001780522 Gm46324 - - 12 A1.1|12 predicted gene, 46324 ncRNA 105244640 XR_867967 Gm40217 - - 4 C6|4 predicted gene, 40217 ncRNA 111425 Mtv39 Mtv-39 - - mammary tumor virus locus 39 other 75020 4930471E15Rik - - - RIKEN cDNA 4930471E15 gene protein-coding 241327 Mm.103491 NM_172854 ENSMUSG00000046618 Olfml2a 4932431K08Rik|mFLJ00237 - 2|2 B olfactomedin-like 2A protein-coding 100416149 Gm17943 - - 18|18 E2 EGF-like domain 7 pseudogene pseudo 109280078 LOC109280078 Mm755 - - VISTA enhancer mm755 biological-region 11600 Mm.309336 NM_009640 ENSMUSG00000022309 Angpt1 1110046O21Rik|Ang-1|Ang1 - 15 B3.1|15 16.69 cM angiopoietin 1 protein-coding 625243 Mm.261798 NR_046024 ENSMUSG00000108383 Gm6567 - - 7 D1|7 predicted gene 6567 ncRNA 102634119 Gm31780 - - 1|1 predicted gene, 31780 protein-coding 106980 AU018705 - - - expressed sequence AU018705 unknown 102465897 NR_106188 ENSMUSG00000098465 Mir1668 Gm27590|mmu-mir-1668 - 8|8 C2 microRNA 1668 ncRNA 378954 Mm.335474 NR_033215 3000002C10Rik - - 9|9 F2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 75580 Mm.426361 NM_029348 ENSMUSG00000018750 Zbtb4 2310026P19Rik|9230111I22Rik|mKIAA1538 - 11|11 B3 zinc finger and BTB domain containing 4 protein-coding 399621 A630024P14Rik - - - RIKEN cDNA A630024P14 gene protein-coding 19863 Rnu6-ps1 - - - U6 small nuclear RNA, pseudogene 1 pseudo 16241 In(13)31Rk-d In(13)31Rk|In31Rk - - inversion, Chr 13, Roderick 31, distal other 108169000 LOC108169000 - - 4 C5 40S ribosomal protein S25 pseudogene pseudo 110691 Hyab - - Y|Y histocompatibility Y antigen A-restricted protein-coding 52745 D4Wsu36e - - - DNA segment, Chr 4, Wayne State University 36, expressed unknown 108168147 Gm46448 - - 14 B|14 60S ribosomal protein L7a pseudogene pseudo 194219 Mm.29788 NM_177570 ENSMUSG00000047518 Slfnl1 4933406A14Rik - 4|4 D2.2 schlafen like 1 protein-coding 272636 Mm.490440 NM_177775 ENSMUSG00000037681 Esyt3 D930024E11|D9Ertd280e|Fam62c|mKIAA4186 - 9 E3.3|9 51.54 cM extended synaptotagmin-like protein 3 protein-coding 102639582 Mm.446734 XR_379542 Gm16759 - - 9 C|9 34.07 cM predicted gene, 16759 ncRNA 108380 Srev3 Srev-3 - - SWR/J-RF/J ecotropic provirus 3 other 72607 Mm.316153 NM_001013024 ENSMUSG00000056900 Usp13 2700071E21Rik|AI848077|ISOT3|IsoT-3 - 3|3 A3 ubiquitin specific peptidase 13 (isopeptidase T-3) protein-coding 71770 Mm.39053 NM_027915 ENSMUSG00000035152 Ap2b1 1300012O03Rik|AI788979|AP105B - 11|11 C adaptor-related protein complex 2, beta 1 subunit protein-coding 258497 Mm.377536 NM_146504 ENSMUSG00000059106 Olfr961 MOR224-5 - 9|9 A5.1 olfactory receptor 961 protein-coding 628145 Zfp419 EG628145|Gm6849 - 7|7 A1 zinc finger protein 419 pseudo 258963 Mm.377773 NM_146961 ENSMUSG00000059136 Olfr539 MOR253-4 - 7|7 F4 olfactory receptor 539 protein-coding 109279960 LOC109279960 Mm426 - - VISTA enhancer mm426 biological-region 13065 Cycs-ps2 - - 5|5 E4 cytochrome c, pseudogene 2 pseudo 17720 ND4L - - - NADH dehydrogenase subunit 4L protein-coding 78718 Mm.244075 NR_040605 ENSMUSG00000101812 D530049I02Rik - - 1|1 C3 RIKEN cDNA D530049I02 gene ncRNA 237433 Mm.478763 NM_001037166 Gm4925 EG237433 - 10|10 C1 predicted gene 4925 protein-coding 102467355 n-TMcat4 n-Tm4 - 15 E3|15 nuclear encoded tRNA methionine 4 (anticodon CAT) tRNA 258389 Mm.377473 NM_146394 ENSMUSG00000068647 Olfr1278 MOR245-11 - 2|2 E3 olfactory receptor 1278 protein-coding 77956 Mm.442925 A930026B05Rik - - - RIKEN cDNA A930026B05 gene protein-coding 330177 Mm.24343 NM_183306 ENSMUSG00000061288 Taok3 2900006A08Rik|A130052D22|A430105I05Rik - 5|5 F TAO kinase 3 protein-coding 102633601 XR_381772 Gm31386 - - 12 D1|12 predicted gene, 31386 ncRNA 100503053 XM_003945599 Gm14517 - - X A1.1|X 10.6 cM predicted gene 14517 protein-coding 100035725 Sbnt1 - - - spacial bias during navigation task 1 unknown 78164 4930441N18Rik - - 4|4 RIKEN cDNA 4930441N18 gene protein-coding 100039899 XM_006541567 ENSMUSG00000105993 Tex13d Gm2483 - X A4|X TEX13 family member D protein-coding 101406 Mm.440474 6030456E01Rik BB041536 - - RIKEN cDNA 6030456E01 gene protein-coding 244701 Mm.222631 NM_145712 ENSMUSG00000050901 Mtnr1b Mel-1B-R|Mel1b|Mt2 - 9|9 A2 melatonin receptor 1B protein-coding 620631 Mm.389286 NM_001081228 ENSMUSG00000075272 Ttc30a2 - - 2|2 C3 tetratricopeptide repeat domain 30A2 protein-coding 20028 Mm.440883 NM_024458 ENSMUSG00000006007 Pdc Rpr-1|Rpr1 - 1 G1|1 63.84 cM phosducin protein-coding 80288 Mm.370270 NM_030256 ENSMUSG00000063382 Bcl9l B9L|BC003321|BCL9-2|DLNB11 - 9|9 A5.2 B cell CLL/lymphoma 9-like protein-coding 319165 Mm.390553 NM_178188 ENSMUSG00000071478 Hist1h2ad - - 13|13 A3.1 histone cluster 1, H2ad protein-coding 105246875 XR_879912 Gm42081 - - 11 B2|11 predicted gene, 42081 ncRNA 108168756 XM_017319372 Gm46741 - - 2 C1.1|2 predicted gene, 46741 protein-coding 629591 XM_894492 Gm6987 EG629591 - X|X C3 predicted pseudogene 6987 protein-coding 17169 Mm.260504 NM_021516 ENSMUSG00000007411 Mark3 1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10 - 12|12 F1 MAP/microtubule affinity regulating kinase 3 protein-coding 102635357 Gm32717 - - 10 D2|10 predicted gene, 32717 pseudo 70601 Mm.35105 NM_027475 ENSMUSG00000021810 Ecd 5730461K03Rik|Hsgt1 - 14|14 A3 ecdysoneless cell cycle regulator protein-coding 52034 D19Ertd756e - - - DNA segment, Chr 19, ERATO Doi 756, expressed unknown 668493 Ighv1-19-1 EG668493|Gm9203 - 12 F2|12 immunoglobulin heavy variable 1-19-1 other 22232 Mm.214976 NM_078484 ENSMUSG00000031156 Slc35a2 AI327289|Had-1|Had1|Sfc8|UGT|Ugalt - X A1.1|X 3.56 cM solute carrier family 35 (UDP-galactose transporter), member A2 protein-coding 329782 Mm.183459 NR_040398 ENSMUSG00000085084 4930570G19Rik C630015G22 - 3|3 H4 RIKEN cDNA 4930570G19 gene ncRNA 622962 Gm6375 EG622962 - 6|6 G1 actin, beta pseudogene pseudo 69125 Mm.28910 NM_026949 ENSMUSG00000020515 Cnot8 1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059 - 11|11 B1.3 CCR4-NOT transcription complex, subunit 8 protein-coding 102640924 XR_388283 Gm36871 - - 19 A|19 predicted gene, 36871 ncRNA 17986 Mm.5014 NM_010883 ENSMUSG00000040138 Ndp ND|Ndph - X A1.2|X 12.07 cM Norrie disease (pseudoglioma) (human) protein-coding 62461 D14Mit265 - - 14 50.9 cM DNA Segment, Chr 14 Massachusetts Institute of Technology 265 unknown 100034778 Paam2 - - - progression of autoimmune arthritis in MRL mice 2 unknown 29826 Del(X)16Brd - - - deletion, Chr X, Bradley 16 other 16276 In(3)15Rk-d In(3)15Rk|In15Rk - - inversion, Chr 3, Roderick 15, distal other 102639215 Gm35575 - - 9|9 predicted gene, 35575 pseudo 140481 Mm.269245 NM_172903 ENSMUSG00000038886 Man2a2 1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx - 7|7 D2 mannosidase 2, alpha 2 protein-coding 242235 Mm.302549 NM_001205102 ENSMUSG00000093865 Lrit3 Gm421 - 3|3 G3 leucine-rich repeat, immunoglobulin-like and transmembrane domains 3 protein-coding 432530 Mm.259733 NM_009622 ENSMUSG00000020431 Adcy1 AC1|D11Bwg1392e|I-AC|brl|mKIAA4070 - 11 A1|11 4.72 cM adenylate cyclase 1 protein-coding 230649 Mm.109600 NM_181040 ENSMUSG00000028710 Atpaf1 6330547J17Rik|AI593252|ATP11|ATP11p - 4|4 D1 ATP synthase mitochondrial F1 complex assembly factor 1 protein-coding 666746 Gm8268 EG666746 - 8|8 A4 predicted gene 8268 pseudo 111070 Odc-rs6 BRS-6|Odc-6 - - ornithine decarboxylase, related sequence 6 pseudo 258889 Mm.473590 NM_146887 ENSMUSG00000057149 Olfr1301 MOR248-5 - 2|2 E3 olfactory receptor 1301 protein-coding 105245649 Gm41076 - - 13|13 predicted gene, 41076 ncRNA 102467563 n-TKctt7 n-Tk7 - 1 E2.1|1 nuclear encoded tRNA lysine 7 (anticodon CTT) tRNA 102634565 Gm29048 - - Y|Y predicted gene 29048 pseudo 100418175 Gm19055 - - 3|3 E2 ribosome production factor 2 homolog pseudogene pseudo 102638459 Mm.260223 XR_383951 Gm35019 - - 15 B3.1|15 predicted gene, 35019 ncRNA 230837 Mm.77788 NM_001008232 ENSMUSG00000036995 Asap3 9430088F20Rik|Ddefl1|Gm140|UPLC1 - 4|4 D3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding 56771 Mm.59393 NM_020048 ENSMUSG00000092558 Med20 1110011O05Rik|2410115I17Rik|AU018348|Trfp - 17|17 C mediator complex subunit 20 protein-coding 105245333 Gm40807 - - 10|10 predicted gene, 40807 ncRNA 105245539 Gm40984 - - 13|13 predicted gene, 40984 ncRNA 627455 Gm6758 EG627455 - X|X A7.3 predicted gene 6758 pseudo 108167947 XR_001780517 Gm46307 - - 12 A1.2|12 predicted gene, 46307 ncRNA 100042773 XR_873237 Tmed10-ps Gm4024 - 13 A3.3|13 transmembrane p24 trafficking protein 10, pseudogene pseudo 75607 Mm.342723 NM_029361 ENSMUSG00000037989 Wnk2 1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760 - 13 A5|13 25.07 cM WNK lysine deficient protein kinase 2 protein-coding 258825 Mm.377710 NM_146828 ENSMUSG00000043331 Olfr975 MOR224-2 - 9|9 A5.1 olfactory receptor 975 protein-coding 66740 Mm.440760 NM_025737 ENSMUSG00000056197 4931417E11Rik - - 6|6 C1 RIKEN cDNA 4931417E11 gene protein-coding 100316681 NR_035438 ENSMUSG00000084663 Mir1900 Mirn1900|mmu-mir-1900 - 9 A3|9 7.7 cM microRNA 1900 ncRNA 100862239 Spin2g Gm21582|Spin2-ps5 - X|X spindlin family, member 2G protein-coding 76050 5830440H09Rik - - 16|16 RIKEN cDNA 5830440H09 gene protein-coding 17472 Mm.440525 NM_008620 ENSMUSG00000079363 Gbp4 AW228052|Mag-2|Mpa-2|Mpa2 - 5 E5|5 50.68 cM guanylate binding protein 4 protein-coding 111835 Iapls1-12 - - - intracisternal A particle, lymphocyte specific 1-12 other 102640230 XR_387357 Gm36347 - - 1 E4|1 predicted gene, 36347 ncRNA 100042649 Gm20933 - - Y|Y predicted gene, 20933 protein-coding 105244193 XR_866411 LOC105244193 - - 2 C2 uncharacterized LOC105244193 ncRNA 627828 Mm.459502 NR_033513 ENSMUSG00000092086 Gm6793 EG627828 - 8|8 E1 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 100416196 Gm14600 - - X|X A5 centromere protein K pseudogene pseudo 102636770 XR_379633 Gm33750 - - 9 D|9 predicted gene, 33750 ncRNA 105244846 Gm40380 - - 6|6 predicted gene, 40380 ncRNA 108168978 XR_001784444 Gm46870 - - 4 D2.2|4 predicted gene, 46870 ncRNA 231821 Mm.297819 NM_172723 ENSMUSG00000056413 Adap1 4930431P11Rik|Centa1|GC1L|p42IP4 - 5|5 G2 ArfGAP with dual PH domains 1 protein-coding 102635922 Gm33136 - - 7|7 predicted gene, 33136 ncRNA 171253 Mm.377207 NM_134219 ENSMUSG00000099917 Vmn1r215 V1ri2 - 13|13 A3.1 vomeronasal 1 receptor 215 protein-coding 100416683 Gm18190 - - 7|7 A1 zinc finger protein 772 pseudogene pseudo 102639558 Mm.446115 Gm14582 - - X|X 28.79 cM predicted gene 14582 ncRNA 102466787 NR_105981 ENSMUSG00000098737 Mir7014 Gm27837|mmu-mir-7014 - 3|3 F2.1 microRNA 7014 ncRNA 668563 Gm9245 EG668563 - 12|12 F2 WW domain binding protein 11 pseudogene pseudo 16730 L1Md-Tf14 - - - L1 repeat, Tf subfamily, member 14 other 20371 Mm.182291 NM_054039 ENSMUSG00000039521 Foxp3 JM2|scurfin|sf - X A1.1|X 3.41 cM forkhead box P3 protein-coding 382975 Gm5212 EG382975 - 15|15 B2 60S ribosomal protein L5 pseudogene pseudo 100041821 Gm3529 - - 12|12 D1 predicted gene 3529 pseudo 433177 Gm5504 EG433177 - 18|18 B3 high mobility group box 1-like pseudogene pseudo 13075 Mm.5199 NM_007810 ENSMUSG00000032274 Cyp19a1 Ar|ArKO|Cyp19|Int-5|Int5|p450arom - 9 A5.3|9 29.49 cM cytochrome P450, family 19, subfamily a, polypeptide 1 protein-coding 102640746 NR_153800 Gm36742 - - 16 B4|16 predicted gene, 36742 ncRNA 102639712 Gm35960 - - 5 C3.2|5 predicted gene, 35960 pseudo 100039209 Gm20799 - - Y|Y predicted gene, 20799 protein-coding 62212 D16Mit41 - - 16 28.44 cM DNA segment, Chr 16, Massachusetts Institute of Technology 41 unknown 27808 119L04F - - - DNA segment, 119L04F (Research Genetics) unknown 105244252 XR_866593 Gm39894 - - 2 E2|2 predicted gene, 39894 ncRNA 625033 Gm13713 - - 2|2 D predicted gene 13713 protein-coding 319240 Mm.245085 9330159N05Rik - - 5|5 E2 RIKEN cDNA 9330159N05 gene protein-coding 16870 Mm.142856 NM_010710 ENSMUSG00000000247 Lhx2 LH2A|Lh-2|Lim2|ap|apterous - 2|2 B LIM homeobox protein 2 protein-coding 71405 Mm.260918 NM_027788 ENSMUSG00000074647 Fam83c 5530400B04Rik - 2|2 H1 family with sequence similarity 83, member C protein-coding 110392 rsl Rslcan-9 - - regulator of sex limited protein-Slp protein-coding 74390 4932434E15Rik - - 2|2 H4 RIKEN cDNA 4932434E15 gene unknown 19358 Mm.255539 NM_009010 ENSMUSG00000003813 Rad23a 2310040P19Rik|AL024030|HR23A|mHR23A - 8|8 C2 RAD23 homolog A, nucleotide excision repair protein protein-coding 100040037 Gm2566 - - 5|5 G3 predicted gene 2566 pseudo 26378 Mm.292869 NM_011933 ENSMUSG00000036775 Decr2 - - 17 A3.3|17 13.06 cM 2-4-dienoyl-Coenzyme A reductase 2, peroxisomal protein-coding 102634718 XR_391241 Gm32236 - - 7 B1|7 predicted gene, 32236 ncRNA 104946 D12Mgi38 AU019942 - - DNA Segment, Chr 12, Mouse Genome Informatics 38 unknown 66170 Mm.40621 NM_025395 ENSMUSG00000037938 Chchd5 1110027L01Rik|AW045710 - 2|2 F1 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 627995 Gm6821 - - 3 F1|3 predicted gene 6821 protein-coding 493106 Spha2 Spa2 - - sperm head anomaly 2 unknown 320959 Mm.444183 A230048O21Rik - - 15|15 RIKEN cDNA A230048O21 gene protein-coding 102636920 XR_386133 Gm33860 - - 18 A2|18 predicted gene, 33860 ncRNA 102467417 n-TPcgg1 n-Tp10 - 17 A3.3|17 nuclear encoded tRNA proline 1 (anticodon CGG) tRNA 52586 D13Ertd311e - - - DNA segment, Chr 13, ERATO Doi 311, expressed unknown 237542 Mm.220204 NM_175489 ENSMUSG00000020189 Osbpl8 AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8 - 10|10 D1 oxysterol binding protein-like 8 protein-coding 631400 Gm12950 - - 4|4 D1 predicted gene 12950 pseudo 102632675 XR_391983 ENSMUSG00000099786 Gm29215 - - Y B|Y predicted gene 29215 ncRNA 105246402 XR_001782447 Gm41694 - - 18 B2|18 predicted gene, 41694 ncRNA 100418169 Gm19051 - - 18|18 D3 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 66838 Mm.375010 NR_038126 ENSMUSG00000043644 0610009L18Rik - - 11|11 E2 RIKEN cDNA 0610009L18 gene ncRNA 100035334 Elads4 - - - ENU induced lung adenoma susceptibility 4 unknown 387182 NR_029573 ENSMUSG00000065532 Mir187 Mirn187|mir-187|mmu-mir-187 - 18|18 A2 microRNA 187 ncRNA 232585 Mm.389082 NM_001013757 ENSMUSG00000079679 Vwde Gm467 - 6|6 A1 von Willebrand factor D and EGF domains protein-coding 74288 Mm.159159 NM_028855 ENSMUSG00000041165 Spem1 1700095G12Rik - 11|11 B3 sperm maturation 1 protein-coding 93923 D16Jhu62 503G8.SP6 - - DNA segment, Chr 16, Johns Hopkins University 62 unknown 105246757 XR_878679 Gm41999 - - 3 A1|3 predicted gene, 41999 ncRNA 102631836 Atp5k-ps2 Atp5k-rs2|Gm14337 - 2|2 H4 ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 2 pseudo 16453 Mm.249645 NM_010589 ENSMUSG00000031805 Jak3 fae|wil - 8 B3.3|8 34.43 cM Janus kinase 3 protein-coding 108167912 XR_001780260 LOC108167912 - - 11 B5 uncharacterized LOC108167912 ncRNA 108168350 Mm.385076 NR_155517 Gm27217 - - 17 C|17 predicted gene 27217 ncRNA 493809 Mm.379737 NM_001008429 ENSMUSG00000069708 Taar3 - - 10|10 A4 trace amine-associated receptor 3 protein-coding 223696 Mm.246435 NM_172609 ENSMUSG00000022427 Tomm22 2310047D01|Tom22 - 15|15 E1 translocase of outer mitochondrial membrane 22 protein-coding 100418068 Gm18980 - - 6|6 C1 EGF-like repeats and discoidin I-like domains 3 pseudogene pseudo 18432 Mm.147946 NM_016776 ENSMUSG00000040463 Mybbp1a AL024407|AU019902|P160|p160MBP|p67MBP - 11 B4|11 44.29 cM MYB binding protein (P160) 1a protein-coding 100038557 Mm.427997 Gm10605 - - - predicted gene 10605 unknown 100035131 Wbcq6 - - - white blood cell QTL 6 unknown 625989 Gm6641 EG625989 - 5|5 A1 predicted gene 6641 pseudo 111649 Igl-1 - - 16 cen-B5|16 immunoglobulin lambda chain, cluster 1 other 105243597 XR_880307 Gm39472 - - 11 E2|11 predicted gene, 39472 ncRNA 407808 Mm.484380 BC050972 - - 9|9 C cDNA sequence BC050972 ncRNA 404507 Olfr1398-ps1 - - 3|3 C olfactory receptor 1398, pseudogene 1 pseudo 100036363 Pregq3 - - 13 7.31 cM pregnancy QTL 3 unknown 108863618 LOC108863618 - - 5 F +19.5 kb enhancer downstream of Gfi1 biological-region 102632611 XR_390638 Gm11211 - - 4 B3|4 33.28 cM predicted gene 11211 ncRNA 102634953 XR_390453 Gm32412 - - 4 A5|4 predicted gene, 32412 ncRNA 102634517 Gm13110 - - 4|4 84.69 cM predicted gene 13110 ncRNA 19342 Mm.482114 NM_029391 ENSMUSG00000053291 Rab4b 1500031G17Rik - 7 A3|7 15.84 cM RAB4B, member RAS oncogene family protein-coding 102634363 XR_380820 Gm31963 - - 10 D2|10 predicted gene, 31963 ncRNA 492893 Cd8mts6 - - 19 39.37 cM CD8 memory T cell subset 6 unknown 102632396 XR_380605 Gm30480 - - 10 C1|10 predicted gene, 30480 ncRNA 100416344 Gm18056 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 235442 Mm.260376 NM_173413 ENSMUSG00000036943 Rab8b 5930437D16|D330025I23Rik - 9|9 C RAB8B, member RAS oncogene family protein-coding 70987 Mm.449985 XR_880009 4931413K12Rik 1700067H02Rik - 11|11 B5 RIKEN cDNA 4931413K12 gene ncRNA 24046 Mm.89981 NM_011887 ENSMUSG00000034115 Scn11a NSS2|NaN|NaT|NaV1.9|SNS2 - 9 F3|9 71.33 cM sodium channel, voltage-gated, type XI, alpha protein-coding 105245058 Mm.105069 LOC105245058 - - - uncharacterized LOC105245058 ncRNA 100379144 A330079N23Rik - - 6 G3|6 RIKEN cDNA A330079N23 gene unknown 78690 C030006N10Rik - - 10|10 RIKEN cDNA C030006N10 gene protein-coding 100124623 Mm.396281 XR_865938 Gm13179 - - 2 A1|2 predicted gene 13179 unknown 14791 Mm.6390 NM_013536 ENSMUSG00000004268 Emg1 C2f|Grcc2f - 6 F2|6 59.17 cM EMG1 N1-specific pseudouridine methyltransferase protein-coding 668872 Gm9411 EG668872 - 17|17 E5 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 230584 Mm.29118 NM_145550 ENSMUSG00000057375 Yipf1 C030002N13Rik - 4|4 C7 Yip1 domain family, member 1 protein-coding 108245 Dppa5-ps1 Esg1-ps1|esg-1 - - developmental pluripotency associated 5, pseudogene 1 pseudo 101056173 Gm21778 - - Y|Y predicted gene, 21778 protein-coding 102640476 Mm.474038 XM_006530029 Gm36527 Gm37156 - 1 G1|1 predicted gene, 36527 protein-coding 13358 Mm.229291 NM_153150 ENSMUSG00000003528 Slc25a1 1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3 - 16 A3|16 11.11 cM solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1 protein-coding 117225 wam - - - whiskers amiss unknown 432801 Gm16416 EG638534 - 13|13 D1 ribosomal protein L21 pseudogene pseudo 73040 Mm.265384 NR_015605 ENSMUSG00000099696 2900052N01Rik AU067665 - 9|9 A5.3 RIKEN cDNA 2900052N01 gene ncRNA 109729 Hst6 - - - hybrid sterility 6 protein-coding 102638853 XR_379652 Gm27227 - - 9 E1|9 predicted gene 27227 ncRNA 58244 Mm.66264 NM_021433 ENSMUSG00000026470 Stx6 2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861 - 1|1 G3 syntaxin 6 protein-coding 102640177 Gm36306 - - 16|16 predicted gene, 36306 ncRNA 66425 Mm.482117 NM_025557 ENSMUSG00000038370 Pcp4l1 1500036F01Rik - 1|1 H3 Purkinje cell protein 4-like 1 protein-coding 103557 AA409525 - - - expressed sequence AA409525 unknown 18436 Mm.25722 NM_008771 ENSMUSG00000020787 P2rx1 AI323649|BB122383|P2x|Pdcd3|RP-2 - 11 B4|11 45.09 cM purinergic receptor P2X, ligand-gated ion channel, 1 protein-coding 226691 Mm.440876 NM_001204910 ENSMUSG00000073490 Ifi207 AI607873|Pyhin-A|pyhinA - 1|1 H3 interferon activated gene 207 protein-coding 58231 Mm.234472 NM_021420 ENSMUSG00000018209 Stk4 AI447339|AU020804|Kas-2|Mst1|Ysk3 - 2|2 H3 serine/threonine kinase 4 protein-coding 102465776 NR_106137 ENSMUSG00000098996 Mir7676-1 Gm27600|mmu-mir-7676-1 - 15|15 E1 microRNA 7676-1 ncRNA 28206 D6Wum14 109F12R - - DNA segment, Chr 6, Washington University School of Medicine 14 unknown 67291 Mm.103384 NM_152807 ENSMUSG00000049957 Ccdc137 3110023B02Rik - 11|11 E2 coiled-coil domain containing 137 protein-coding 102631570 XR_388979 Gm29873 - - 11 D|11 predicted gene, 29873 ncRNA 102640493 XR_379680 Gm36539 - - 9 E3.1|9 predicted gene, 36539 ncRNA 15425 Mm.4444 NM_010465 ENSMUSG00000001661 Hoxc6 Hox-3.3|Hox-6.1 - 15 F3|15 58.06 cM homeobox C6 protein-coding 100416974 Gm18343 - - 5|5 A3 sperm associated antigen 7 pseudogene pseudo 73968 Mm.55591 NR_038034 4930444F02Rik 1700010L24Rik|mpiR - 10|10 A3 RIKEN cDNA 4930444F02 gene ncRNA 102636766 XR_880812 Gm33747 - - 1 H5|1 predicted gene, 33747 ncRNA 109314 Mm.440617 NM_175424 ENSMUSG00000056270 Prr9 A030004J04Rik - 3|3 F1 proline rich 9 protein-coding 433546 Gm14231 - - 2|2 H1 ribosomal protein L9 pseudogene pseudo 105247172 XR_881446 Gm42317 - - 4 D2.3|4 predicted gene, 42317 ncRNA 61361 D4Mit180 - - 4 82.6 cM DNA segment, Chr 4, Massachusetts Institute of Technology 180 unknown 18608 pdw - - - proportional dwarf unknown 232790 Mm.358882 NM_175632 ENSMUSG00000054594 Oscar mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3 - 7|7 A1 osteoclast associated receptor protein-coding 57267 Mm.293931 NM_018758 ENSMUSG00000004931 Apba3 AW208791|Mint-3|X11gamma|lin-10|mint3 - 10|10 C1 amyloid beta (A4) precursor protein-binding, family A, member 3 protein-coding 67468 Mm.277518 NM_026178 ENSMUSG00000003948 Mmd 1200017E07Rik|1810073C06Rik|AA690185 - 11|11 C monocyte to macrophage differentiation-associated protein-coding 102639736 NR_132655 Gm35978 - - 2 A3|2 predicted gene, 35978 ncRNA 723832 NR_029649 ENSMUSG00000065410 Mir298 Mirn298|mir-298|mmu-mir-298 - 2|2 H4 microRNA 298 ncRNA 78523 Mm.218515 NM_030116 ENSMUSG00000028140 Mrpl9 8030480E20Rik|AA409733|C330013D18Rik|L9mt - 3|3 F2.1 mitochondrial ribosomal protein L9 protein-coding 102631564 Gm28889 - - Y|Y predicted gene 28889 ncRNA 100416650 Gm18169 - - 16|16 B5 ribosomal protein L10A pseudogene pseudo 108513 Mpmv26 Mpmv-26 - - modified polytropic murine leukemia virus 26 other 100041177 XM_017316333 ENSMUSG00000091148 Gm3182 - - 14 A1|14 predicted gene 3182 protein-coding 226243 Mm.25791 NM_146101 ENSMUSG00000025075 Habp2 AI035669|FSAP|HABP|HGFAL|PHBP - 19|19 D2 hyaluronic acid binding protein 2 protein-coding 105245373 Gm40839 - - 12|12 predicted gene, 40839 ncRNA 104141 H57 H(tn) - - histocompatibility 57 protein-coding 96978 C79119 - - - expressed sequence C79119 unknown 105244888 XR_872731 Gm40416 - - 12 B3|12 predicted gene, 40416 ncRNA 13559 Mm.153415 NM_007892 ENSMUSG00000027552 E2f5 AU024671|E2F-5 - 3|3 A1 E2F transcription factor 5 protein-coding 433024 Mm.328170 NM_001034884 Gm5486 EG433024 - 16|16 B5 predicted gene 5486 unknown 20195 Mm.280038 NM_016740 ENSMUSG00000027907 S100a11 EMAPI|Emap1|S100a14|S100c|cal - 3|3 F2.1 S100 calcium binding protein A11 protein-coding 68778 Mm.29382 NM_175133 ENSMUSG00000033416 Gucd1 1110038D17Rik - 10|10 C1 guanylyl cyclase domain containing 1 protein-coding 70489 Mm.383563 NR_038158 ENSMUSG00000087424 5730405O15Rik - - X|X A1.1 RIKEN cDNA 5730405O15 gene ncRNA 76043 5830424K16Rik - - - RIKEN cDNA 5830424K16 gene protein-coding 105247182 XR_881488 Gm12974 - - 4 D2.3|4 66.34 cM predicted gene 12974 ncRNA 105247234 XM_017320563 Gm42368 pol - 4 E1|4 predicted gene, 42368 protein-coding 102641436 LOC102641436 - - - eukaryotic translation initiation factor 5 protein-coding 258543 Mm.377559 NM_146550 ENSMUSG00000069421 Olfr810 MOR113-4 - 10|10 D3 olfactory receptor 810 protein-coding 68075 Mm.132803 NM_026547 ENSMUSG00000028701 Lurap1 1520402A15Rik|Lrp35a - 4|4 D1 leucine rich adaptor protein 1 protein-coding 109391 Cbm4 Cbs19a - - cerebellum weight 4 unknown 105242447 XR_867554 Gm38712 - - 3 F2.3|3 predicted gene, 38712 ncRNA 102633259 XR_382462 ENSMUSG00000084949 Gm16249 - - 13 B1|13 29.36 cM predicted gene 16249 ncRNA 100416762 Gm18234 - - 16|16 B2 zinc finger protein 106 pseudogene pseudo 436026 Gm5739 EG436026 - 8|8 A1.1 ezrin pseudogene pseudo 13085 Mm.20770 NM_133657 ENSMUSG00000060407 Cyp2a12 - - 7|7 A3 cytochrome P450, family 2, subfamily a, polypeptide 12 protein-coding 67575 Mm.84331 NM_026248 ENSMUSG00000027157 4930430A15Rik - - 2|2 E3 RIKEN cDNA 4930430A15 gene protein-coding 100124357 Traj32 Gm16667 - 14|14 C2 T cell receptor alpha joining 32 other 100035146 Scpro8 - - - Stem cell proliferation 8 unknown 111421 Mtv30 Mtv-30 - - mammary tumor virus locus 30 other 102632198 XR_389244 Gm30338 - - 11 E2|11 predicted gene, 30338 ncRNA 258917 Mm.223322 NM_146915 ENSMUSG00000048620 Olfr1336 MOR103-7 - 7|7 A1 olfactory receptor 1336 protein-coding 102638541 XM_006519856 Gm35078 - - 14 C1|14 predicted gene, 35078 protein-coding 66340 Mm.86557 NM_025498 ENSMUSG00000036835 Psenen 1700023M09Rik|Pen-2 - 7|7 B1 presenilin enhancer gamma secretase subunit protein-coding 100043042 Zscan4-ps3 Gm4186 - 7 A1|7 zinc finger and SCAN domain containing 4, pseudogene 3 pseudo 57373 Mm.334138 NM_020616 ENSMUSG00000031023 Akip1 BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27 - 7|7 E3 A kinase (PRKA) interacting protein 1 protein-coding 100124575 Vmn2r-ps92 - - 10|10 C1 vomeronasal 2, receptor, pseudogene 92 pseudo 111757 Iapls1-2 - - - intracisternal A particle, lymphocyte specific 1-2 other 112429 Slthsr - - 11 51.34 cM semilethal sex-restricted unknown 52282 D9Ertd356e - - 9 51.08 cM DNA segment, Chr 9, ERATO Doi 356, expressed unknown 102640010 Gm36186 - - 5|5 predicted gene, 36186 ncRNA 102632820 XR_374648 Gm13707 - - 2 C3|2 43.68 cM predicted gene 13707 ncRNA 328245 Mm.291089 E030007A22Rik E030007A22 - 13|13 A5 RIKEN cDNA E030007A22 gene ncRNA 105244955 XR_872868 1700030I03Rik - - 12|12 D1 RIKEN cDNA 1700030I03 gene ncRNA 78921 Mm.200950 NM_030226 ENSMUSG00000030823 9130019O22Rik - - 7|7 F3 RIKEN cDNA 9130019O22 gene protein-coding 66414 Mm.27886 NM_025551 ENSMUSG00000020022 Ndufa12 2410011G03Rik|AW112974 - 10|10 C2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 protein-coding 22067 Mm.82621 NM_009428 ENSMUSG00000041710 Trpc5 CCE2|TRP-5|TRP5|Trrp5 - X F2|X 65.49 cM transient receptor potential cation channel, subfamily C, member 5 protein-coding 102640309 XR_377737 Gm36408 - - 6 C1|6 predicted gene, 36408 ncRNA 100418467 Gm19229 - - 10|10 B2 predicted gene, 19229 pseudo 100417478 Gm18635 - - 5|5 E1 Rho GTPase activating protein 11A pseudogene pseudo 269823 Mm.9122 NM_173006 ENSMUSG00000029759 Pon3 2810004E20|AI786302 - 6 A1|6 1.99 cM paraoxonase 3 protein-coding 102632506 Gm12591 - - 11|11 88.0 cM predicted gene 12591 protein-coding 102635990 XM_006514360 ENSMUSG00000044581 LOC102635990 - - 10 C1 uncharacterized LOC102635990 protein-coding 62557 D12Mit108 - - 12 13.45 cM DNA segment, Chr 12, Massachusetts Institute of Technology 108 unknown 320966 Mm.210209 NM_177302 B530045E10Rik - - 10|10 D1 RIKEN cDNA B530045E10 gene unknown 102640565 XR_390813 Gm36599 - - 4 D2.3|4 predicted gene, 36599 ncRNA 102465541 NR_105863 ENSMUSG00000098680 Mir6898 Gm27816|mmu-mir-6898 - 1|1 B microRNA 6898 ncRNA 21356 Mm.154457 NM_009318 ENSMUSG00000024308 Tapbp D17Wsu91e|TPN - 17 B1|17 17.98 cM TAP binding protein protein-coding 83673 Mm.292489 NR_002896 ENSMUSG00000108414 Snhg1 - - 19|19 A small nucleolar RNA host gene 1 ncRNA 108167358 XM_017312457 LOC108167358 - - 7 F5 endogenous retrovirus group K member 8 Gag polyprotein-like protein-coding 75281 Mm.159487 NR_045811 ENSMUSG00000051198 4930548G14Rik - - 15|15 B3.3 RIKEN cDNA 4930548G14 gene ncRNA 668947 Gm11452 - - 2|2 H2 transcriptional adaptor 3 pseudogene pseudo 266744 Mm.389093 NM_153601 ENSMUSG00000050217 Lgsn Gluld1|Lgs|lengsin - 1|1 B lengsin, lens protein with glutamine synthetase domain protein-coding 78009 Mm.243831 4930469B13Rik - - - RIKEN cDNA 4930469B13 gene protein-coding 408065 Mm.461583 NM_001001186 ENSMUSG00000078995 Zfp456 BC065418|Rslcan-13 - 13 B3|13 34.54 cM zinc finger protein 456 protein-coding 632264 Gm14703 - - X|X A1.1 predicted gene 14703 unknown 78343 Mm.387374 XR_001780126 ENSMUSG00000085588 3110004A20Rik - - 11|11 A5 RIKEN cDNA 3110004A20 gene ncRNA 27765 196D11.T7 - - - DNA segment, 196D11.T7 (Roswell Park) unknown 320086 Mm.461605 E430022K19Rik - - 6|6 RIKEN cDNA E430022K19 gene protein-coding 100504629 Gm17669 - - 18|18 40.02 cM predicted gene, 17669 protein-coding 12162 Mm.595 NM_007557 ENSMUSG00000008999 Bmp7 OP1 - 2 H3|2 95.54 cM bone morphogenetic protein 7 protein-coding 105245987 XR_875462 Gm41355 - - 15 E1|15 predicted gene, 41355 ncRNA 108239 Dppa5-ps7 Esg1-ps7|esg-1 - - developmental pluripotency associated 5, pseudogene 7 pseudo 102636478 XR_389826 LOC102636478 - - - uncharacterized LOC102636478 ncRNA 102631658 Gm14437 - - 2|2 85.59 cM predicted gene 14437 ncRNA 100417621 Gm13451 - - 2|2 B apurinic/apyrimidinic endonuclease 1 pseudogene pseudo 20496 Mm.399997 NM_009194 ENSMUSG00000024597 Slc12a2 9330166H04Rik|Nkcc1|mBSC2|sy-ns - 18 D3|18 32.15 cM solute carrier family 12, member 2 protein-coding 61522 D8Mit162 - - 8 36.99 cM DNA segment, Chr 8, Massachusetts Institute of Technology 162 unknown 100862119 Gm14387 - - 2|2 zinc finger protein 91-like pseudo 114172 Etohcta6 - - 6 64.03 cM ethanol conditioned taste aversion 6 unknown 100418422 Gm19202 - - 3|3 F2.2 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene pseudo 100038737 Gm10403 - - - predicted gene 10403 ncRNA 102639931 XR_381338 Gm36129 - - 12 A1.3|12 predicted gene, 36129 ncRNA 18793 Mm.1359 NM_011113 ENSMUSG00000046223 Plaur Cd87|u-PAR|uPAR - 7|7 A3 plasminogen activator, urokinase receptor protein-coding 78414 Mm.273327 NM_030097 ENSMUSG00000024532 1700034E13Rik - - 18|18 D1 RIKEN cDNA 1700034E13 gene protein-coding 19509 Rb(2.17)4H Rb4H - - Robertsonian translocation, Chr 2 and 17, Harwell 4 other 62727 D19Mit105 - - 19 52.12 cM DNA segment, Chr 19, Massachusetts Institute of Technology 105 unknown 66873 Mm.422727 NM_025817 ENSMUSG00000043496 Tril 1200009O22Rik|AI316813|mKIAA0644 - 6|6 B3 TLR4 interactor with leucine-rich repeats protein-coding 114863 Mm.277501 NM_054057 ENSMUSG00000031485 Plpbp 1700024N20Rik|2200002F22Rik|Prosc - 8|8 A2 pyridoxal phosphate binding protein protein-coding 380994 Mm.391354 NM_001037748 ENSMUSG00000093993 Gm20736 - - Y|Y C3 predicted gene, 20736 protein-coding 57270 Mm.419144 NM_020513 ENSMUSG00000057564 Olfr1508 MOR244-2|MOR244-4|Mor10|Or10 - 14|14 C2 olfactory receptor 1508 protein-coding 433283 Gm5525 EG433283 - 1|1 A5 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 223870 Mm.384023 NM_144851 ENSMUSG00000033075 Senp1 2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2 - 15 F1|15 54.04 cM SUMO1/sentrin specific peptidase 1 protein-coding 102641610 XR_877328 Gm38566 - - 18 B3|18 predicted gene, 38566 ncRNA 100040239 Gm15173 - - X|X F4 predicted gene 15173 pseudo 107813 Tel3q1 - - - telomeric repeat sequence, Chr 3, q arm 1 protein-coding 62465 D15Mit261 - - 15 37.85 cM DNA Segment, Chr 15 Massachusetts Institute of Technology 261 unknown 75563 Mm.50304 NM_175223 ENSMUSG00000042707 Dnali1 1700023A09Rik|AW049135 - 4|4 D2.2 dynein, axonemal, light intermediate polypeptide 1 protein-coding 100503224 Gm14878 - - X|X 47.36 cM 60S ribosomal protein L37-like pseudo 100101427 Gm9911 - - - predicted gene 9911 unknown 102631960 Mm.374444 XR_384132 Gm30159 - - 15 D1|15 predicted gene, 30159 ncRNA 665677 Gm7745 - - 12 C1|12 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105246361 Gm41660 - - 18|18 predicted gene, 41660 ncRNA 74624 Mm.389662 NR_040699 ENSMUSG00000104956 4930429D17Rik - - 5|5 E5 RIKEN cDNA 4930429D17 gene ncRNA 102467468 n-TRcct2 n-Tr11 - 17 A3.3|17 nuclear encoded tRNA arginine 2 (anticodon CCT) tRNA 14661 Mm.10600 NM_008133 ENSMUSG00000021794 Glud1 AI118167|Gdh-X|Glud|Gludl - 14 B|14 20.8 cM glutamate dehydrogenase 1 protein-coding 668402 Gm13733 - - 2|2 D ADP-ribosylation factor 2 pseudogene pseudo 102634550 Mm.167494 XR_379229 ENSMUSG00000098519 Gm27166 - - 9 A4|9 predicted gene 27166 ncRNA 66375 Mm.289653 NM_025522 ENSMUSG00000021094 Dhrs7 2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4 - 12|12 C3 dehydrogenase/reductase (SDR family) member 7 protein-coding 106759 Mm.203952 NM_174989 ENSMUSG00000047123 Ticam1 AW046014|AW547018|TICAM-1|TRIF - 17|17 D toll-like receptor adaptor molecule 1 protein-coding 230161 Mm.30101 NM_001164565 ENSMUSG00000070985 Acnat1 AI132189 - 4|4 B1 acyl-coenzyme A amino acid N-acyltransferase 1 protein-coding 546216 Mszf17 - - - mszf17 protein-coding 384560 Gm5322 EG384560 - 7|7 A2 eukaryotic translation initiation factor pseudogene pseudo 18983 Mm.272551 NM_011135 ENSMUSG00000031601 Cnot7 AU022737|CAF-1|Caf1|Pop2 - 8|8 A4 CCR4-NOT transcription complex, subunit 7 protein-coding 22160 Mm.3280 NM_011658 ENSMUSG00000035799 Twist1 M-Twist|Pde|Ska10|Ska|Twist|bHLHa38|pdt - 12 A3|12 14.81 cM twist basic helix-loop-helix transcription factor 1 protein-coding 666688 Gm8239 EG666688 - 6|6 B3 predicted gene 8239 protein-coding 60719 D9Mit57 - - 9 2.46 cM DNA segment, Chr 9, Massachusetts Institute of Technology 57 unknown 74509 6820402I19Rik - - 14|14 RIKEN cDNA 6820402I19 gene protein-coding 108167584 XR_001778762 Gm45723 - - 8 E1|8 predicted gene 45723 ncRNA 402747 Mm.74629 NM_207274 D630004N19Rik - - 7|7 E2 RIKEN cDNA D630004N19 gene unknown 102633497 Mm.186700 XR_376388 A730080H06Rik - - 4|4 C5 RIKEN cDNA A730080H06 gene ncRNA 102631756 Gm30016 - - 2|2 predicted gene, 30016 ncRNA 667160 Gm15490 EG667160 - 6|6 C1 predicted gene 15490 pseudo 258737 Mm.377665 NM_146742 ENSMUSG00000109801 Olfr1316 MOR245-1|MOR245-26 - 2|2 E3 olfactory receptor 1316 protein-coding 639527 Gm7269 EG639527 - 10|10 D2 calcyphosphine 2 pseudogene pseudo 74296 Mm.391818 1700093J21Rik - - 16|16 C4 RIKEN cDNA 1700093J21 gene unknown 105245304 Gm40779 - - 10|10 predicted gene, 40779 ncRNA 56470 Mm.274366 NM_026446 ENSMUSG00000002458 Rgs19 2610042F04Rik|AI324841|AW547781|GAIP - 2 H4|2 103.72 cM regulator of G-protein signaling 19 protein-coding 100417389 Gm18584 - - 6|6 B2.3 TAR (HIV) RNA binding protein 2 pseudogene pseudo 102467413 n-TQctg4 n-Tq4 - 3 F2.1|3 nuclear encoded tRNA glutamine 4 (anticodon CTG) tRNA 628431 Mm.376526 NR_033589 Hmgb1-rs17 Hmg1-rs17 - 8|8 A3 high mobility group box 1, related sequence 17 pseudo 100042159 Mm.489579 NM_001243011 ENSMUSG00000101381 Btbd35f16 Gm3701 - X A1.1|X BTB domain containing 35, family member 16 protein-coding 241113 Mm.166501 NM_153744 ENSMUSG00000006542 Prkag3 AMPKg3L|AMPKg3S|Amkg3|Ampkg3 - 1|1 C4 protein kinase, AMP-activated, gamma 3 non-catalytic subunit protein-coding 100036493 Imebt2 - - - imprinting effect on body traits 2 unknown 100066 Mm.26915 NM_001004141 ENSMUSG00000066097 Cyp2j11 AI314783|Cyp2j11-ps - 4|4 C5 cytochrome P450, family 2, subfamily j, polypeptide 11 protein-coding 667400 Gm8609 EG667400 - 16|16 B4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 21420 Mm.3629 NM_009335 ENSMUSG00000028640 Tfap2c AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c - 2|2 H3 transcription factor AP-2, gamma protein-coding 109280 Mm.261557 NM_175420 ENSMUSG00000092212 Slc22a13b-ps 9330176C04Rik|Slc22a13b - 9|9 F3 solute carrier family 22 (organic cation transporter), member 13b, pseudogene pseudo 100503931 Gm19972 - - 10|10 31.67 cM predicted gene, 19972 ncRNA 78899 Mm.437536 NM_001039529 4932443L11Rik - - 8|8 A1.1 RIKEN cDNA 4932443L11 gene unknown 61691 D6Mit244 - - 6 32.14 cM DNA segment, Chr 6, Massachusetts Institute of Technology 244 unknown 69553 Mm.68454 NM_001080708 ENSMUSG00000074577 Ripor3 2310033K02Rik|Fam65c|Gm124 - 2|2 H3 RIPOR family member 3 protein-coding 100416699 Gm18206 - - 7|7 A3 zinc finger protein 787 pseudogene pseudo 105246275 XR_876800 Gm41581 - - 17 B3|17 predicted gene, 41581 ncRNA 103537 Mm.210334 NM_134012 ENSMUSG00000059474 Mbtd1 AA408199|AI194990|hemp - 11|11 D mbt domain containing 1 protein-coding 100417319 Gm18530 - - 18|18 B3 crumbs homolog 1 pseudogene pseudo 100036062 Fibrs1 - - - fibrosarcoma susceptibility 1 unknown 100417817 Gm18847 - - X|X C1 BCL2/adenovirus E1B interacting protein 2 pseudogene pseudo 613119 Ugt1a11-ps A14P' - - UDP glucuronosyltransferase 1 family, polypeptide A11, pseudogene pseudo 61045 DXMit125 - - X 17.0 cM DNA segment, Chr X, Massachusetts Institute of Technology 125 unknown 71226 Mm.399574 NR_045851 ENSMUSG00000114362 4933433G19Rik - - 13|13 B3 RIKEN cDNA 4933433G19 gene ncRNA 100035244 Iba7 - - 4 45.71 cM induction of brown adipocytes 7 unknown 13457 Dp(14)2H Dp2H - - duplication, Chr 14, Harwell 2 other 11532 Mm.3874 NM_007410 ENSMUSG00000028138 Adh5 Adh-5|Adh3|GSNOR - 3|3 G3 alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding 19871 NR_004418 ENSMUSG00000064390 Rnu73b U73b - 3 F1|3 U73B small nuclear RNA snRNA 18258 ocd - - - osteochondrodystrophy unknown 102638685 XR_381588 Gm35188 - - 12 C1|12 predicted gene, 35188 ncRNA 108168599 XM_017318805 LOC108168599 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 100286834 Gm17803 - - 8|8 A3 eukaryotic translation initiation factor 4A1 pseudogene pseudo 102632484 XR_376101 Gm26691 - - 3 G3|3 predicted gene, 26691 ncRNA 114252 Many2 QTL-CS11.1 - - mandible asymmetry 2 unknown 97753 C86807 - - - expressed sequence C86807 unknown 27362 Mm.27432 NM_013760 ENSMUSG00000014905 Dnajb9 AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7 - 12|12 B2 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 105246989 XR_880625 Gm42177 - - X A3.1|X predicted gene, 42177 ncRNA 668521 Ighv1-44 - - 12|12 F2 immunoglobulin heavy variable V1-44 pseudo 21863 tint - - - tail interaction with T complex unknown 114303 Lcrd - - - Lymphoma common region of deletion protein-coding 320192 C130092D22Rik - - 2|2 RIKEN cDNA C130092D22 gene ncRNA 229681 Mm.206379 NM_153091 ENSMUSG00000045576 St7l St7r - 3|3 F2.2 suppression of tumorigenicity 7-like protein-coding 233902 Mm.259353 NM_172748 ENSMUSG00000030811 Fbxl19 6030430O11|BC059812|Fbl19 - 7|7 F3 F-box and leucine-rich repeat protein 19 protein-coding 105244540 XR_867591 Gm40133 - - 3 G1|3 predicted gene, 40133 ncRNA 239037 Mm.37907 NM_146245 ENSMUSG00000041044 Lrit1 BC032270|Lrrc21 - 14|14 B leucine-rich repeat, immunoglobulin-like and transmembrane domains 1 protein-coding 102637475 Gm29637 - - Y|Y predicted gene 29637 protein-coding 666315 Gm8041 EG666315 - 5|5 E3 predicted gene 8041 pseudo 69714 Mm.358730 NM_023524 ENSMUSG00000006335 Tfpt 2400004F01Rik|AI450389|Amida|FB1 - 7|7 A1 TCF3 (E2A) fusion partner protein-coding 102634303 XR_382876 Gm31920 - - 13 D2.1|13 predicted gene, 31920 ncRNA 102465577 NR_105921 ENSMUSG00000099180 Mir6956 Gm27880|mmu-mir-6956 - 15|15 E1 microRNA 6956 ncRNA 436440 Mm.335670 NM_001013832 ENSMUSG00000071311 Gpr31b 12-HETER|GPR31c(t)|Gpr31|Gpr31c - 17 A1|17 8.76 cM G protein-coupled receptor 31, D17Leh66b region protein-coding 102634849 XR_385776 Gm32336 - - 17 E2|17 predicted gene, 32336 ncRNA 101056236 Mm.149108 NR_105054 Gm29805 - - 16 C4|16 predicted gene, 29805 ncRNA 100113449 Brml8 - - - bone response to mechanical loading 8 unknown 545964 Mm.229337 LOC545964 - - 7|7 B3 uncharacterized LOC545964 protein-coding 271508 Mm.417609 NM_177773 ENSMUSG00000049357 4933408B17Rik - - 18|18 B1 RIKEN cDNA 4933408B17 gene protein-coding 333883 Mm.359026 NM_181858 ENSMUSG00000068686 Cd59b - - 2|2 E2 CD59b antigen protein-coding 16400 Mm.57035 NM_013565 ENSMUSG00000001507 Itga3 AA407068|CD49C|GAPB3 - 11 D|11 59.01 cM integrin alpha 3 protein-coding 258036 Mm.390851 NM_001011808 ENSMUSG00000052537 Olfr198 MOR182-8 - 16|16 C1.3 olfactory receptor 198 protein-coding 320984 4932442G11Rik - - 14|14 RIKEN cDNA 4932442G11 gene protein-coding 73597 1700113H21Rik - - 1|1 RIKEN cDNA 1700113H21 gene protein-coding 21014 T(1;17)190Ca T190Ca - - reciprocal translocation, Chr 1 and 17, Carter 190 other 100416100 Gm17914 - - 12|12 A1.1 aurora kinase A pseudogene pseudo 116732 Mm.207048 NM_054073 ENSMUSG00000039032 Tsga13 1700023D02Rik|Vme1 - 6|6 A3.3 testis specific gene A13 protein-coding 105244204 XR_866456 Gm39854 - - 2 C3|2 predicted gene, 39854 ncRNA 546849 Mm.457885 NM_001085536 ENSMUSG00000041735 Gm13178 Gm437 - 4|4 E1 predicted gene 13178 protein-coding 97531 C79240 - - - expressed sequence C79240 unknown 665738 XM_017315678 Gm7762 - - 13 B3|13 predicted gene 7762 protein-coding 56418 Mm.294821 NM_019661 ENSMUSG00000002741 Ykt6 0610042I15Rik|1810013M05Rik|AW105923 - 11|11 A1 YKT6 v-SNARE homolog (S. cerevisiae) protein-coding 675812 Mm.442122 NM_001163996 ENSMUSG00000023284 Zfp605 A830023I12Rik - 5|5 F zinc finger protein 605 protein-coding 102639040 XR_378552 4932437C15Rik - - 7|7 F3 RIKEN cDNA 4932437C15 gene ncRNA 100124468 NR_030612 ENSMUSG00000076357 Mir653 Mirn653|mir-653|mmu-mir-653 - 6 A1|6 microRNA 653 ncRNA 435996 Gm5735 EG435996 - 7|7 E2 ribosomal protein S29 pseudogene pseudo 68701 Mm.46477 NM_026814 ENSMUSG00000025129 Ppp1r27 1110033I14Rik|Dysfip1|toonin - 11|11 E2 protein phosphatase 1, regulatory subunit 27 protein-coding 22410 Mm.4709 NM_011718 ENSMUSG00000022996 Wnt10b Wnt12 - 15 F1|15 54.65 cM wingless-type MMTV integration site family, member 10B protein-coding 100417328 Gm18534 - - 4|4 C2 signal recognition particle 72 pseudogene pseudo 620839 Gm6185 EG620839 - 1|1 H2.1 solute carrier family 9, member C2 pseudogene pseudo 111994 Emo3 - - - emotionality 3 unknown 70047 Mm.196332 NM_027296 ENSMUSG00000013736 Trnt1 2410043H24Rik|2610044E04Rik|9830143O18Rik|AA408384|C76540|CGI-47|mt-Trat - 6|6 E1 tRNA nucleotidyl transferase, CCA-adding, 1 protein-coding 434037 Igkv12-47 EG434037|Gm5574 - 6 C1|6 immunoglobulin kappa variable 12-47 pseudo 630486 Ighv2-6 Gm16594 - 12|12 F1 immunoglobulin heavy variable 2-6 other 320916 Mm.102783 NM_177292 ENSMUSG00000063430 Wscd2 4933413A10Rik|C530024P05Rik|Gm450 - 5|5 F WSC domain containing 2 protein-coding 76661 Mm.489045 1700122D07Rik - - 1|1 RIKEN cDNA 1700122D07 gene protein-coding 100416369 Gm18075 - - 14|14 E2.3 HCLS1 associated X-1 pseudogene pseudo 83772 H2-D - - - histocompatibility 2, D region other 100043251 Mm.20388 XR_001778708 Gm4316 - - 8 E1|8 predicted gene 4316 protein-coding 666971 Gm8392 EG666971 - 1|1 E2.3 guanosine diphosphate (GDP) dissociation inhibitor 2 pseudogene pseudo 102641236 XR_001780659 Gm38543 - - 12 D2|12 predicted gene, 38543 ncRNA 667997 Gm8918 EG667997 - 12|12 E developmentally regulated GTP binding protein 2 pseudogene pseudo 637004 Mm.469887 NM_001104614 ENSMUSG00000091572 Vmn2r3 EG637004 - 3|3 E1 vomeronasal 2, receptor 3 protein-coding 105243276 XR_879151 Gm39240 - - 8 D3|8 predicted gene, 39240 ncRNA 102467328 n-TIaat17 n-Ti17 - 17 E4|17 nuclear encoded tRNA isoleucine 17 (anticodon TAT) tRNA 100417492 Gm18644 - - 8|8 A4 voltage-dependent anion channel 3 pseudogene pseudo 50510 Igk-Eik - - 6|6 immunoglobulin kappa chain, enhancer intronic other 100039988 Gm11826 - - 4|4 A1 predicted gene 11826 pseudo 105243042 XR_869905 Gm39078 Gm45111 - 7 F2|7 predicted gene, 39078 ncRNA 108168948 Gm46855 - - 4 A5|4 U6 snRNA-associated Sm-like protein LSm3 pseudogene pseudo 100036190 Nsila4 - - - novelty/stress induced locomotor activation 4 unknown 100125242 Vmn2r-ps111 - - 14 C1|14 vomeronasal 2, receptor, pseudogene 111 pseudo 105244802 XR_868606 Gm40348 Gm42562 - 5 G2|5 predicted gene, 40348 ncRNA 61065 D3Mit267 - - 3 7.66 cM DNA segment, Chr 3, Massachusetts Institute of Technology 267 unknown 68379 Mm.170508 NM_028412 ENSMUSG00000039205 Ciz1 0610038H21Rik|2900056O04Rik|LSFR1|ZNF356 - 2|2 B CDKN1A interacting zinc finger protein 1 protein-coding 102638874 XR_873552 Gm35333 - - 13 B2|13 predicted gene, 35333 ncRNA 11522 Mm.2409 NM_007409 ENSMUSG00000074207 Adh1 ADH-A2|ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e - 3 G3|3 64.16 cM alcohol dehydrogenase 1 (class I) protein-coding 110792 Igk-V10B - - - immunoglobulin kappa chain variable 10 (V10)B other 116773 Dautb2 - - - dopamine uptake transporter binding 2 unknown 102634323 XR_866999 Gm14320 Gm31932 - 2 H3|2 predicted gene 14320 ncRNA 56637 Mm.394930 NM_019827 ENSMUSG00000022812 Gsk3b 7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3 - 16|16 B3 glycogen synthase kinase 3 beta protein-coding 102466761 NR_105869 ENSMUSG00000098926 Mir6904 Gm27426|mmu-mir-6904 - 1|1 H4 microRNA 6904 ncRNA 546989 XM_006508376 ENSMUSG00000081945 Olfr607 EG546989|Gm15121|MOR33-3P - 7|7 E3 olfactory receptor 607 protein-coding 93880 Mm.286019 NM_053134 ENSMUSG00000051242 Pcdhb9 Pcdhb4C|PcdhbI - 18|18 B3 protocadherin beta 9 protein-coding 232539 Mm.491206 NM_001081237 ENSMUSG00000040102 Klhl42 A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340 - 6|6 G3 kelch-like 42 protein-coding 100036384 Nhil5 - - 9 53.48 cM non-heme iron levels 5 unknown 665150 Mm.480266 NM_001166734 ENSMUSG00000091652 Vmn1r57 EG665150|Gm7519 - 7 A1|7 vomeronasal 1 receptor 57 protein-coding 492992 Lscc2 - - - lung squamous cell carcinoma 2 unknown 110026 Krd - - - kidney and retinal defects unknown 665330 Gm7589 EG665330 - 9|9 B ribosomal protein L11 pseudogene pseudo 61668 D7Mit226 - - 7 30.82 cM DNA segment, Chr 7, Massachusetts Institute of Technology 226 unknown 108167860 Mm.390362 XM_017314876 Efcab13 - - 11 E1|11 EF-hand calcium binding domain 13 protein-coding 14551 Mm.453134 Gdap6 - - - ganglioside-induced differentiation-associated-protein 6 protein-coding 100862036 Gm21419 - - Y|Y predicted gene, 21419 protein-coding 100503571 Gm19774 - - 18|18 20.6 cM predicted gene, 19774 protein-coding 100418294 Gm19122 - - 1|1 A3 predicted gene, 19122 pseudo 13726 Mm.18892 NM_007927 ENSMUSG00000001964 Emd AW550900|Sta - X A7.3|X 37.92 cM emerin protein-coding 402767 Mm.385109 NR_045403 ENSMUSG00000097413 A830052D11Rik - - 18|18 B1 RIKEN cDNA A830052D11 gene ncRNA 234413 Mm.334607 NM_001164581 ENSMUSG00000052446 Zfp961 A230105L22Rik|BC065788|mszf37|mszf55-2 - 8|8 B3.3 zinc finger protein 961 protein-coding 667069 Mm.484956 NM_001104619 ENSMUSG00000090581 Vmn2r6 EG620718|EG667069 - 3|3 E1 vomeronasal 2, receptor 6 protein-coding 62981 D17Mit226 - - 17 14.63 cM DNA Segment, Chr 17, Massachusetts Institute of Technology 226 unknown 100417395 Gm13865 - - 3|3 F3 zona pellucida binding protein 2 pseudogene pseudo 108167421 XR_001778111 Gm45982 - - 7 B3|7 predicted gene, 45982 ncRNA 102634895 XR_381889 Gm32370 - - 12 E|12 predicted gene, 32370 ncRNA 100862383 Mm.4711 NM_001270514 ENSMUSG00000094511 Gm21693 - - Y A1|Y predicted gene, 21693 protein-coding 11807 Mm.389209 NM_013474 ENSMUSG00000005681 Apoa2 Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1 - 1 H3|1 79.22 cM apolipoprotein A-II protein-coding 102466208 NR_105889 ENSMUSG00000104996 Mir6924 mmu-mir-6924 - 11|11 B3 microRNA 6924 ncRNA 668251 Gm9067 EG668251 - 19|19 C2 protease (prosome, macropain) 26S subunit, ATPase 1 pseudogene pseudo 100036155 Obwq1 - - 1 50.93 cM obesity and body weight QTL 1 unknown 110701 Cni-rs1 - - - cornichon, related sequence 1 protein-coding 102641880 Mapk6-ps1 - - - mitogen-activated protein kinase 6, pseudogene 1 pseudo 387157 NR_029791 ENSMUSG00000065446 Mir139 Mirn139|mir-139|mmu-mir-139 - 7|7 E2 microRNA 139 ncRNA 53116 EC351RL - - - DNA segment, EC351RL unknown 67667 Mm.116968 NM_026303 ENSMUSG00000025899 Alkbh8 4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8 - 9|9 A1 alkB homolog 8, tRNA methyltransferase protein-coding 108168325 XR_001782152 Gm46582 - - 17 E4|17 predicted gene, 46582 ncRNA 171240 Mm.377196 NM_134206 ENSMUSG00000047655 Vmn1r74 V1rg5 - 7|7 A1 vomeronasal 1 receptor 74 protein-coding 100316773 NR_035446 ENSMUSG00000084514 Mir1893 Mirn1893|mmu-mir-1893 - 18 A1|18 4.49 cM microRNA 1893 ncRNA 258620 Mm.377597 NM_146627 ENSMUSG00000050015 Olfr350 MOR136-13 - 2|2 B olfactory receptor 350 protein-coding 20265 Mm.439704 NM_018733 ENSMUSG00000064329 Scn1a B230332M13|Nav1.1 - 2 C1.3|2 39.13 cM sodium channel, voltage-gated, type I, alpha protein-coding 13418 Mm.246674 NM_007869 ENSMUSG00000026740 Dnajc1 4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1 - 2|2 A3 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 56586 240c11T7 - - - DNA segment, 240c11T7 unknown 21953 Mm.39469 NM_009405 ENSMUSG00000031097 Tnni2 - - 7 F5|7 87.93 cM troponin I, skeletal, fast 2 protein-coding 105975 Mm.394884 NR_040433 ENSMUSG00000097209 AU022754 - - 15 E2|15 expressed sequence AU022754 ncRNA 112200 Wt3q2 - - - body weight, 3 weeks, QTL 2 unknown 102467477 n-TNgtt9 n-Tn9 - 2 A3|2 nuclear encoded tRNA asparagine 9 (anticodon GTT) tRNA 102099 Mm.423206 AI480608 - - - expressed sequence AI480608 protein-coding 100986 Mm.46044 NM_194462 ENSMUSG00000040407 Akap9 5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12 - 5|5 A1 A kinase (PRKA) anchor protein (yotiao) 9 protein-coding 435832 Gm5715 EG435832 - 5|5 A1 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 102632345 XR_373275 Gm30442 - - 1 A5|1 predicted gene, 30442 ncRNA 278507 Mm.342216 NM_181819 ENSMUSG00000044177 Wfikkn2 2610304F08Rik|AY100450|Gasp1|WFIKKNRP - 11|11 D WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 protein-coding 21436 tclLub2 tcl-Lub2 - - t-complex lethal Lub2 unknown 102631620 XR_871928 Gm29915 - - 10 C1|10 predicted gene, 29915 ncRNA 61290 D2Mit281 - - 2 73.53 cM DNA segment, Chr 2, Massachusetts Institute of Technology 281 unknown 100504379 Gm20201 - - 1|1 96.28 cM predicted gene, 20201 ncRNA 625480 Mm.430078 NM_001081564 ENSMUSG00000079699 Gm6592 EG625480 - X|X A1.1 predicted gene 6592 protein-coding 72868 2900022P04Rik - - - RIKEN cDNA 2900022P04 gene protein-coding 102634852 XM_006538408 ENSMUSG00000066141 Gm11232 - - 4|4 C2 predicted gene 11232 protein-coding 20521 Mm.391146 NM_009203 ENSMUSG00000061742 Slc22a12 AI987855|OAT4L|Rst|Slc22al2|URAT1 - 19|19 A solute carrier family 22 (organic anion/cation transporter), member 12 protein-coding 215456 Mm.440454 NM_001081089 ENSMUSG00000046338 Gpat2 A530057A03Rik|Gm116|xGPAT1 - 2|2 F1 glycerol-3-phosphate acyltransferase 2, mitochondrial protein-coding 208836 Mm.349493 NM_145946 ENSMUSG00000039187 Fanci - - 7|7 D2 Fanconi anemia, complementation group I protein-coding 102638008 XR_389659 Gm38505 Gm20446|Gm20514 - 3 A3|3 predicted gene, 38505 ncRNA 226849 Mm.205569 NM_144880 ENSMUSG00000026626 Ppp2r5a PR61alpha - 1|1 H6 protein phosphatase 2, regulatory subunit B', alpha protein-coding 105244980 XM_011242244 Gm40498 - - 8 A4|8 predicted gene, 40498 protein-coding 108212 Rbm6-ps1 - - 1|1 A3 RNA binding motif protein 6, pseudogene 1 pseudo 105180382 Mm.336406 BC024929 - - - expressed sequence BC024929 protein-coding 268936 Mm.291877 NM_199061 ENSMUSG00000063952 Brpf3 AI413466|AW493400|mKIAA1286 - 17|17 A3.3 bromodomain and PHD finger containing, 3 protein-coding 62439 D12Mit269 - - 12 8.04 cM DNA segment, Chr 12, Massachusetts Institute of Technology 269 unknown 544890 Gm10427 - - 12 F1|12 predicted gene 10427 protein-coding 493125 Dmyaq1 - - 1 23.69 cM darker modification of yellow agouti QTL 1 unknown 433813 Mm.259270 NM_001033490 ENSMUSG00000051557 Pusl1 2810021I11Rik|AI853843|D18346 - 4 E2|4 87.66 cM pseudouridylate synthase-like 1 protein-coding 105242438 XR_874554 LOC105242438 - - 14 B uncharacterized LOC105242438 ncRNA 111680 Ms15-6 - - - minisatellite 15-6 detected by probe 33.15 other 100039913 Mm.415046 NM_001099316 ENSMUSG00000079638 Rhox2b Rhox2.2|Rhox2a - X|X A3.3 reproductive homeobox 2B protein-coding 77463 C030014O09Rik - - 2|2 F1 RIKEN cDNA C030014O09 gene protein-coding 105245095 Gm40593 - - 10|10 predicted gene, 40593 ncRNA 102638051 Mm.402928 XR_866479 Gm13657 - - 2 C3|2 44.77 cM predicted gene 13657 ncRNA 100416881 Gm18299 - - 1|1 A2 phosphoglycerate mutase 1 pseudogene pseudo 15166 Mm.12956 NM_008226 ENSMUSG00000020331 Hcn2 BCNG2|HAC1|trls - 10|10 C1 hyperpolarization-activated, cyclic nucleotide-gated K+ 2 protein-coding 28263 D10Jhu58 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 58 unknown 100036530 LOC100036530 - - - uncharacterized LOC100036530 unknown 110079 Rep2 Rep-2 - - repair of chromatin damage 2 protein-coding 100417733 Gm18792 - - 16|16 A1 zinc finger, MYND domain containing 19 pseudogene pseudo 109279920 LOC109279920 Mm172 - - VISTA enhancer mm172 biological-region 108168791 LOC108168791 - - 2 F1 non-histone chromosomal protein HMG-17 pseudogene pseudo 111350 Mmv14 Mmv-14 - - MCF endogenous virus 14 other 116615 D7Tem17 - - - DNA segment, Chr 7, Tempel 17 unknown 27473 48T - - - DNA segment, 48T unknown 105242742 XR_869366 Gm38876 - - 6 E3|6 predicted gene, 38876 ncRNA 70194 Mm.452769 NR_131053 2310075C17Rik - - 9|9 F3 RIKEN cDNA 2310075C17 gene ncRNA 102467642 n-TCgca39 n-Tc39 - 6 B2.3|6 nuclear encoded tRNA cysteine 39 (anticodon GCA) tRNA 100035069 W10q11 - - - weight 10 weeks QTL 11 unknown 666339 Mm.7184 XM_006504541 Muc3 - - 5 G2|5 76.22 cM mucin 3, intestinal protein-coding 61649 D7Mit304 - - 7 77.48 cM DNA segment, Chr 7, Massachusetts Institute of Technology 304 unknown 102641027 XR_385111 LOC102641027 - - - uncharacterized LOC102641027 ncRNA 492943 Prnr2 - - 7 17.4 cM prion resistance 2 unknown 102632234 XR_384240 Gm30368 - - 15 E1|15 predicted gene, 30368 ncRNA 100416204 Gm16305 - - 1|1 E4 ribosomal protein S2 pseudogene pseudo 105245417 XR_872672 Gm40875 - - 12 A3|12 predicted gene, 40875 ncRNA 100040285 Gm2691 - - 6|6 A1 proliferation-associated 2G4 pseudogene pseudo 100043507 NR_153764 Gng5-ps Gm15776 - 16 B1|16 G protein subunit gamma 5, pseudogene pseudo 51893 D2Ertd198 2810003M17Rik|5930426I11Rik|AA672926|D2Ertd198e - 9 4.78 cM DNA segment, Chr 2, ERATO Doi 198 unknown 62084 D10Mit70 - - 10 54.72 cM DNA segment, Chr 10, Massachusetts Institute of Technology 70 unknown 105247113 XR_881185 Gm42271 - - 4 A5|4 predicted gene, 42271 ncRNA 62862 D11Mit294 - - 11 13.89 cM DNA segment, Chr 11, Massachusetts Institute of Technology 294 unknown 110291 Ts1 Ts-1 - - Trichinella spiralis resistance 1 unknown 20944 Mm.140154 NM_009301 ENSMUSG00000017004 Svs5 BB115186|Semg1|Svp-1|Svp1|Svp5 - 2 H3|2 85.16 cM seminal vesicle secretory protein 5 protein-coding 232887 Gm4879 EG232887 - 7|7 A1 WD repeat domain 12 pseudogene pseudo 77949 Mm.294255 A930011B18Rik - - 10|10 RIKEN cDNA A930011B18 gene protein-coding 102633572 XR_382466 Gm31364 - - 13 B1|13 predicted gene, 31364 ncRNA 100040403 Gm2754 - - 12|12 C1 actin, gamma, cytoplasmic 1 pseudogene pseudo 102638021 XR_375056 Gm34689 - - 2 G1|2 predicted gene, 34689 ncRNA 665077 Gm7481 EG665077 - 12|12 B3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100040542 Gm2829 - - 10|10 A4 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene pseudo 24012 Mm.7956 NM_011880 ENSMUSG00000026527 Rgs7 - - 1 H3|1 81.11 cM regulator of G protein signaling 7 protein-coding 68828 Mm.132243 NM_023485 ENSMUSG00000001333 Sync 1110057H03Rik|SNIP4 - 4 D2.2|4 63.26 cM syncoilin protein-coding 105246674 XR_878428 Gm28403 - - 1 E2.1|1 predicted gene 28403 ncRNA 171184 Mm.377165 NM_134166 ENSMUSG00000115482 Vmn1r36 V1rc11 - 6|6 C1 vomeronasal 1 receptor 36 protein-coding 100041244 Mm.407223 NR_033642 Gm3230 - - 2 A3|2 predicted gene 3230 ncRNA 108094 Tcra-V13.4 - - - T cell receptor alpha variable region family 13 subfamily 4 other 108285 Psmc1-rs1 P26s4 - - protease (prosome, macropain) 26S subunit, ATPase 1, related sequence 1 pseudo 99696 Mm.290937 NM_001033198 ENSMUSG00000044864 Ankrd50 AI662170|E430012K20Rik|mKIAA1223|mKIAA3019 - 3|3 B ankyrin repeat domain 50 protein-coding 108167981 XR_001780552 Gm46335 - - 12 A1.1|12 predicted gene, 46335 ncRNA 108167525 XR_001778523 Gm46034 - - 8 A1.3|8 predicted gene, 46034 ncRNA 85040 DXMit4 - - X 61.35 cM DNA segment, Chr X, Massachusetts Institute of Technology 4 unknown 100035469 Lbm14 - - - lean body mass 14 unknown 78594 A430109H19Rik - - 6|6 RIKEN cDNA A430109H19 gene protein-coding 13475 Dp(Hc18) - - - duplication, heterochromatin region, Chr 18 other 320150 Mm.339281 NM_172554 ENSMUSG00000035798 Zdhhc17 A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14 - 10|10 D1 zinc finger, DHHC domain containing 17 protein-coding 108168103 Gm46432 - - 13 C3|13 high mobility group protein B1 pseudogene pseudo 629116 Rps24-ps3 EG629116|Gm6948 - X|X B ribosomal protein S24, pseudogene 3 pseudo 433016 Mm.235340 NM_001082547 ENSMUSG00000079597 Gm5483 EG433016 - 16|16 B3 predicted gene 5483 protein-coding 105242653 XR_869066 Gm38808 - - 6 B2.3|6 predicted gene, 38808 ncRNA 19467 Rb(10.17)9Mpl Rb9Mpl - - Robertsonian translocation, Chr 10 and 17, Montpellier 9 other 105244006 XM_011238892 Gm39701 - - 1 H3|1 predicted gene, 39701 protein-coding 18974 Mm.9199 NM_011133 ENSMUSG00000020974 Pole2 - - 12|12 C2 polymerase (DNA directed), epsilon 2 (p59 subunit) protein-coding 71760 Mm.29125 NM_027907 ENSMUSG00000019232 Etnppl 1300019H02Rik|AI195447|Agxt2l1 - 3|3 G3 ethanolamine phosphate phospholyase protein-coding 69982 Mm.46106 NM_183284 ENSMUSG00000053030 Spink2 1700007F22Rik|AV038945|HUSI-II - 5|5 C3.3 serine peptidase inhibitor, Kazal type 2 protein-coding 93846 D1Jor1 - - - DNA segment, Chr 1, Barbara Jordan 1 unknown 105243306 XR_879260 Gm39266 - - 8 E1|8 predicted gene, 39266 ncRNA 100040363 XR_882319 Gm20838 - - Y|Y B predicted gene, 20838 ncRNA 216877 Mm.35399 NM_178367 ENSMUSG00000040620 Dhx33 3110057P17Rik|9430096J02Rik|Ddx33 - 11|11 B4 DEAH (Asp-Glu-Ala-His) box polypeptide 33 protein-coding 102634886 Gm32363 - - 18|18 predicted gene, 32363 ncRNA 61757 D4Mit238 - - 4 23.79 cM DNA segment, Chr 4, Massachusetts Institute of Technology 238 unknown 100036251 Si5lq5 - - 11 27.39 cM serum IGFBP-5 level QTL 5 unknown 111365222 Mm.440079 NR_152263 Eyelinc18 - - - uncharacterized EyeLinc18 ncRNA 105243821 Gm39574 - - 11|11 predicted gene, 39574 ncRNA 20905 Mm.423011 NM_009293 Sts ArsC - X;Y|XY 75.0 cM steroid sulfatase protein-coding 112163660 Gm49400 - - - predicted gene 49400 pseudo 666232 Rpl7a-ps14 EG666232|Gm7994 - 7|7 A1 ribosomal protein L7A, pseudogene 14 pseudo 73542 Mm.159026 NM_183099 ENSMUSG00000060794 Tssk5 1700091F14Rik - 15|15 D3 testis-specific serine kinase 5 protein-coding 74894 Mm.10294 4930442H23Rik - - 10|10 RIKEN cDNA 4930442H23 gene unknown 12705 Mm.2390 NM_007709 ENSMUSG00000051159 Cited1 AI316840|AU019144|Msg1 - X D|X 45.25 cM Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 protein-coding 53688 D1Rp5 Tel-rs5 - - DNA segment, Chr 1, Roswell Park 5 unknown 102633819 XR_384379 Gm31551 - - 15 E3|15 predicted gene, 31551 ncRNA 72211 Mm.482899 NR_033448 ENSMUSG00000078935 1700025C18Rik - - 2|2 H3 RIKEN cDNA 1700025C18 gene ncRNA 66559 Mm.152796 NM_025633 ENSMUSG00000041921 Metap1d 2310066F24Rik|3110033D18Rik|AV117938|MAP 1D|Map1d|MetAP 1D|Metapl1 - 2|2 C2 methionyl aminopeptidase type 1D (mitochondrial) protein-coding 56722 Mm.294753 NM_019980 ENSMUSG00000022500 Litaf 3222402J11Rik|C85531|N4WBP3|TBX1 - 16|16 A1 LPS-induced TN factor protein-coding 62249 D18Mit25 - - 18 59.05 cM DNA segment, Chr 18, Massachusetts Institute of Technology 25 unknown 66995 Mm.440155 NM_025893 ENSMUSG00000031428 Zcchc18 1500031H04Rik|Sizn2 - X|X F1 zinc finger, CCHC domain containing 18 protein-coding 777656 Ighj4 Gm16734 - 12|12 F1 immunoglobulin heavy joining 4 other 105243654 Mm.393364 LOC105243654 - - - uncharacterized LOC105243654 ncRNA 100042012 Gm20897 - - Y|Y predicted gene, 20897 protein-coding 102632384 XR_378806 Gm30471 - - 8 A2|8 predicted gene, 30471 ncRNA 19044 Mm.266888 NM_008911 ENSMUSG00000062729 Ppox Ppo - 1|1 H3 protoporphyrinogen oxidase protein-coding 105245063 Gm40567 - - 12|12 predicted gene, 40567 ncRNA 68917 Mm.25285 NM_026871 ENSMUSG00000028470 Hint2 1190005L05Rik - 4|4 A5 histidine triad nucleotide binding protein 2 protein-coding 16720 l17Wis11 l(17)-11Wi - - lethal, Chr 17, U Wisconsin 11 unknown 70925 Mm.393807 NM_172407 ENSMUSG00000038069 Cdkn2aip 4921511I16Rik|AW208986|CARF - 8|8 B1.1 CDKN2A interacting protein protein-coding 241303 Mm.250441 NM_175511 ENSMUSG00000050592 Fam78a A130092J06Rik - 2|2 B family with sequence similarity 78, member A protein-coding 435556 Gm5687 EG435556 - 18|18 A1 ribosomal protein S8 pseudogene pseudo 319432 E030036C24Rik - - X|X RIKEN cDNA E030036C24 gene protein-coding 71388 Mm.158687 NR_038010 ENSMUSG00000020703 5530401A14Rik - - 11|11 B5 RIKEN cDNA 5530401A14 gene ncRNA 672598 Gm9569 - - 7|7 B1 predicted gene 9569 pseudo 100041720 Gm11953 - - 11|11 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 667618 Gm8730 EG667618 - 8|8 D1 ribosomal protein, large, P0 pseudogene pseudo 192176 Mm.295533 NM_010227 ENSMUSG00000031328 Flna ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1 - X A7.3|X 37.89 cM filamin, alpha protein-coding 105246066 XR_875873 Gm41416 - - 16 A1|16 predicted gene, 41416 ncRNA 102635639 Mm.470414 NR_152783 ENSMUSG00000111474 Gm32926 - - 10 A3|10 predicted gene, 32926 ncRNA 668435 Pgk1-rs7 EG668435 - 12 A1.1|12 5.53 cM phosphoglycerate kinase-1, related sequence-7 pseudo 70157 Mm.490532 NR_045360 2210409D07Rik - - 18|18 D3 RIKEN cDNA 2210409D07 gene ncRNA 74425 Mm.399498 NR_046059 ENSMUSG00000115845 4933402J15Rik - - 14|14 D3 RIKEN cDNA 4933402J15 gene ncRNA 100043814 XM_001481003 Frg2f13 Gm4666 - 14|14 E2.3 FSHD region gene 2 family member 13 protein-coding 102467442 n-TYgta1 n-Ty1 - 3 A2|3 nuclear encoded tRNA tyrosine 1 (anticodon GTA) tRNA 433461 Mm.130401 LOC433461 - - 2|2 E3 uncharacterized LOC433461 unknown 209047 Mm.218755 NM_148951 ENSMUSG00000034872 Gipc3 Ahl5|Rgs19ip3 - 10|10 C1 GIPC PDZ domain containing family, member 3 protein-coding 108168094 Gm46424 - - 13 B3|13 40S ribosomal protein S29 pseudogene pseudo 241877 Mm.442146 NM_001010834 ENSMUSG00000058921 Slc10a5 Gm405|mP5 - 3|3 A1 solute carrier family 10 (sodium/bile acid cotransporter family), member 5 protein-coding 100417801 Gm15667 - - 14|14 B transformer 2 beta homolog pseudogene pseudo 623269 Gm13414 EG623269 - 2|2 B DnaJ (Hsp40) homolog, subfamily B, member 6 pseudogene pseudo 67127 Mm.41969 NM_025984 ENSMUSG00000057609 Lce1a1 2200008B06Rik|Sprrl3 - 3|3 F1 late cornified envelope 1A1 protein-coding 102635503 XR_385656 Gm32822 - - 17 D|17 predicted gene, 32822 ncRNA 100124671 Trbv11 - - 6|6 B1 T cell receptor beta variable 11 pseudo 102465226 NR_105844 ENSMUSG00000098910 Mir6416 Gm27746|mmu-mir-6416 - 7|7 C microRNA 6416 ncRNA 102633517 XR_379584 Gm31325 - - 9 C|9 predicted gene, 31325 ncRNA 102632228 Mm.185374 XR_874393 Gm30363 - - 14 A3|14 predicted gene, 30363 ncRNA 62889 D11Mit219 - - 11 44.0 cM DNA segment, Chr 11, Massachusetts Institute of Technology 219 unknown 666559 Gm8163 EG666559 - X|X A6 farnesyl diphosphate synthetase pseudogene pseudo 100417512 Gm18660 - - 3|3 D proliferating cell nuclear antigen pseudogene pseudo 66352 Mm.33285 NM_025505 ENSMUSG00000026577 Blzf1 1700030G05Rik|Blzf1l|Golgin-45|Jem-1 - 1|1 H2.2 basic leucine zipper nuclear factor 1 protein-coding 666049 Gm13080 - - 4|4 E1 predicted gene 13080 pseudo 14186 Mm.276715 NM_008011 ENSMUSG00000005320 Fgfr4 Fgfr-4 - 13 B1|13 29.8 cM fibroblast growth factor receptor 4 protein-coding 75357 Mm.410806 NR_040703 ENSMUSG00000106902 4930557J02Rik - - 5|5 B2 RIKEN cDNA 4930557J02 gene ncRNA 72662 Mm.163339 NM_028315 ENSMUSG00000033166 Dis3 2810028N01Rik - 14|14 E2.2 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease protein-coding 319525 Mm.447615 D330013E07Rik - - 8|8 RIKEN cDNA D330013E07 gene protein-coding 68058 Mm.31761 NM_026539 ENSMUSG00000028089 Chd1l 4432404A22Rik|Alc1|Snf2p - 3|3 F2.1-F2.2 chromodomain helicase DNA binding protein 1-like protein-coding 53739 D7Byu27 D0Byu27 - - DNA segment, Chr 7, Brigham Young University 27 unknown 110907 Hspa2os 70kDa|Hsp70-2os|Hsp70-2s - - heat shock protein 2, opposite strand protein-coding 105245681 XR_874229 Gm41098 - - 14 A2|14 predicted gene, 41098 ncRNA 72292 2210009P08Rik AV074459 - - RIKEN cDNA 2210009P08 gene protein-coding 100417161 Gm18433 - - 3|3 F2.1 sarcolemma associated protein pseudogene pseudo 74467 Mm.29536 NM_028304 ENSMUSG00000020280 Pus10 2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139 - 11 A3.2|11 pseudouridylate synthase 10 protein-coding 66098 Mm.20313 NM_025351 ENSMUSG00000030086 Chchd6 0710001P09Rik|1700021B03Rik - 6|6 D1 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 108168230 XR_001781606 Gm46508 - - 15 A1|15 predicted gene, 46508 ncRNA 100043502 Mm.425076 Gm4482 - - 6 F1|6 uridine-cytidine kinase 1 pseudogene pseudo 629292 Gm6960 EG629292 - 18|18 D3 predicted pseudogene 6960 pseudo 359898 DXMgc68 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 68 unknown 102467506 n-TCgca47 n-Tc47 - 9 F1|9 nuclear encoded tRNA cysteine 47 (anticodon GCA) tRNA 105246476 Gm41761 - - 18|18 predicted gene, 41761 ncRNA 223693 Mm.323358 NM_172608 ENSMUSG00000009035 Tmem184b 2610507A11|4732495E13Rik - 15|15 E1 transmembrane protein 184b protein-coding 28284 D10Jhu46 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 46 unknown 233103 Mm.491097 NM_172741 ENSMUSG00000066571 4931406P16Rik AA553327|mKIAA0355 - 7|7 B1 RIKEN cDNA 4931406P16 gene protein-coding 101056300 XM_011243980 LOC101056300 - - - DNA-binding protein inhibitor ID-3 protein-coding 104055 Hst3 Hst-3 - - hybrid sterility 3 protein-coding 100417712 Gm18776 - - 1|1 A5 NOP2 nucleolar protein homolog pseudogene pseudo 102635731 Mm.491066 XR_384179 Gm32994 - - 15 D3|15 predicted gene, 32994 ncRNA 100039252 XR_867911 Gm12693 - - 4|4 C5 predicted gene 12693 pseudo 434437 Mm.390225 NM_001013814 ENSMUSG00000032607 Amt EG434437 - 9|9 F1 aminomethyltransferase protein-coding 240025 Mm.79993 NM_172826 ENSMUSG00000048826 Dact2 2900084M21Rik|A630024E20|Dpr2|Frd2|dapper2 - 17|17 A2 dishevelled-binding antagonist of beta-catenin 2 protein-coding 545367 Gm5834 EG545367 - 1|1 F predicted pseudogene 5834 protein-coding 628007 Gm6825 EG628007 - 8|8 D3 predicted gene 6825 pseudo 105247241 XR_881840 Gm42373 - - 7 A2|7 predicted gene, 42373 ncRNA 100035569 Rplag - - 13 63.73 cM reduced platelet aggregation unknown 107075095 LOC107075095 - - 1 C3 desmin upstream regulatory region biological-region 102640723 Gm36723 - - 12|12 predicted gene, 36723 ncRNA 102639617 XR_374611 Gm13601 - - 2 C1.3|2 39.31 cM predicted gene 13601 ncRNA 22290 Mm.20477 NM_009484 ENSMUSG00000068457 Uty Hydb|mKIAA4057 - Y|Y A1 ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome protein-coding 780833 Ighv8-1 - - 12|12 F1 immunoglobulin heavy variable V8-1 pseudo 83431 Mm.31979 NM_023668 ENSMUSG00000018736 Ndel1 2600006O07Rik|MITAP1|NUDEL|mNudel - 11|11 B3 nudE neurodevelopment protein 1 like 1 protein-coding 434168 Mm.333799 XR_391382 Gm5590 EG434168 - 7|7 B3 predicted gene 5590 unknown 61218 D1Mit211 - - 1 10.59 cM DNA segment, Chr 1, Massachusetts Institute of Technology 211 unknown 16447 Mm.207365 NM_008412 ENSMUSG00000049128 Ivl 1110019C06Rik - 3 F1|3 40.14 cM involucrin protein-coding 677270 Gm9710 - - 5|5 G2 predicted gene 9710 pseudo 102640298 XR_001784854 Gm36401 - - 5 B3|5 predicted gene, 36401 ncRNA 100502602 Mm.390830 NR_040360 ENSMUSG00000115924 Gm19277 - - 15 E2|15 40.25 cM predicted gene, 19277 ncRNA 102632292 Mm.489034 XR_873068 1700127F24Rik - - 12|12 F1 RIKEN cDNA 1700127F24 gene ncRNA 620697 Mm.389945 NM_001105181 ENSMUSG00000096861 Vmn2r68 EG620697|Vmn2r68-ps - 7|7 D3 vomeronasal 2, receptor 68 protein-coding 227920 Gm13527 - - 2|2 C1.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100416802 Gm18263 - - 13|13 A1 R3H domain containing 2 pseudogene pseudo 100861503 NR_046156 ENSMUSG00000095453 n-R5s149 Rn5s32 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 149 rRNA 667300 Olfr1464-ps1 Gm8561|MOR202-27P - 19|19 A olfactory receptor 1464, pseudogene 1 pseudo 104091 Ir1 Ir-1 - - immune response 1 unknown 52736 D13Uth7e - - - DNA segment, Chr 13, University of Utah, expressed 7 unknown 12984 Mm.1940 NM_007781 ENSMUSG00000071714 Csf2rb2 AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2 - 15 E1|15 37.22 cM colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage) protein-coding 100035829 Hdl40 - - 18 32.15 cM HDL level 40 unknown 108167390 LOC108167390 - - - H-2 class I histocompatibility antigen, D-D alpha chain-like pseudo 100125405 Femwf13 - - - femur work to failure 13 unknown 15298 Hmgb1-rs18 Hmg1-rs18 - 4|4 C1 high mobility group box 1, related sequence 18 pseudo 100039789 XM_006538412 Gm12407 - - 4|4 A5 predicted gene 12407 protein-coding 58800 Mm.244705 NM_021450 ENSMUSG00000027365 Trpm7 2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK - 2|2 F1 transient receptor potential cation channel, subfamily M, member 7 protein-coding 101494 Mm.250744 AI132709 - - - expressed sequence AI132709 protein-coding 100034966 Mp53d1 - - 19 29.79 cM modifier of p53-deficiency 1 unknown 100418072 Prkaca-ps1 Pkaca-ps1 - X|X F4 protein kinase, cAMP dependent, catalytic, alpha pseudogene 1 pseudo 102636113 Gm15572 - - 6|6 25.75 cM predicted gene 15572 pseudo 100505265 Gm28645 - - 1|1 predicted gene 28645 protein-coding 104033 Dfp2 - - - dark foot pads 2 protein-coding 105242604 XR_868816 Gm38772 - - 6 A2|6 predicted gene, 38772 ncRNA 258102 Olfr1146-ps1 MOR264-12P - 2|2 D olfactory receptor 1146, pseudogene 1 pseudo 102638295 Gm38507 - - 3|3 predicted gene, 38507 ncRNA 493008 Orgwq5 - - 3 72.32 cM organ weight QTL 5 unknown 72057 Mm.440085 NM_024250 ENSMUSG00000023883 Phf10 1810055P05Rik|AV024533 - 17|17 A2 PHD finger protein 10 protein-coding 114054 Lrnx10 - - 2 87.22 cM learning-contextual 10 unknown 62425 D12Mit197 - - 12 2.89 cM DNA segment, Chr 12, Massachusetts Institute of Technology 197 unknown 70202 Mm.158337 NM_027344 ENSMUSG00000056728 Ctsll3 2310051M13Rik - 13|13 B2 cathepsin L-like 3 protein-coding 72340 Mm.443395 NR_040609 ENSMUSG00000100860 2010009K17Rik - - 2|2 H1 RIKEN cDNA 2010009K17 gene ncRNA 666479 Gm8125 EG666479 - 9|9 E1 predicted gene 8125 pseudo 77965 Mm.447300 A930033C23Rik - - 5|5 B2 RIKEN cDNA A930033C23 gene protein-coding 668686 Gm12501 - - 3|3 F2.3 SIVA1, apoptosis-inducing factor pseudogene pseudo 21943 Mm.249221 NM_011613 ENSMUSG00000022015 Tnfsf11 Ly109l|ODF|OPGL|RANKL|Trance - 14 D3|14 41.26 cM tumor necrosis factor (ligand) superfamily, member 11 protein-coding 218865 Mm.259916 NM_172264 ENSMUSG00000015970 Chdh AU041472|D630034H06Rik - 14|14 B choline dehydrogenase protein-coding 102643051 XR_873811 Gm38653 - - 13 C3|13 predicted gene, 38653 ncRNA 61095 D1Mit478 - - 1 26.58 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 478 unknown 71710 Mm.257449 NM_028915 ENSMUSG00000027550 Lrrcc1 1200008A14Rik|4932441F23Rik|AI195358|AI447421 - 3|3 A1 leucine rich repeat and coiled-coil domain containing 1 protein-coding 492881 Blmpf2 - - 11 32.13 cM bleomycin-induced pulmonary fibrosis 2 unknown 103499 AW821966 - - - expressed sequence AW821966 protein-coding 100042547 Gm3897 - - 13 C1|13 predicted gene 3897 pseudo 52027 Mm.442257 NR_045808 D17Ertd648e - - 17 A1|17 DNA segment, Chr 17, ERATO Doi 648, expressed ncRNA 68312 Mm.458189 NM_026672 ENSMUSG00000004035 Gstm7 0610005A07Rik|AI894236|Cd203c - 3|3 F2.3 glutathione S-transferase, mu 7 protein-coding 666096 XM_981599 Gm14594 - - X A5|X predicted gene 14594 protein-coding 72864 2900018N21Rik - - 11|11 RIKEN cDNA 2900018N21 gene protein-coding 61740 D4Mit277 - - 4 46.68 cM DNA segment, Chr 4, Massachusetts Institute of Technology 277 unknown 67980 Mm.33830 NM_027681 ENSMUSG00000029209 Gnpda2 4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008 - 5|5 C3.1 glucosamine-6-phosphate deaminase 2 protein-coding 233011 Mm.30963 NM_181593 ENSMUSG00000003752 Itpkc 9130023N17Rik - 7|7 A3 inositol 1,4,5-trisphosphate 3-kinase C protein-coding 666365 Obox3-ps3 Gm8064 - 7 A1|7 oocyte specific homeobox 3, pseudogene 3 pseudo 100036028 Pbft3 Pbf3 - - percent body fat 3 unknown 100038664 Gm10842 - - - predicted gene 10842 protein-coding 114320 Taste12 - - - taste bitterness sensitivity 12 unknown 21193 T(4;In8)36H T36H - - reciprocal translocation, Chr 4 and inverted Chr 8, Harwell 36 other 77596 Mm.159950 NM_133776 ENSMUSG00000041293 Adgrf1 5031409J19Rik|Gpr110|KPG_009 - 17|17 B3 adhesion G protein-coupled receptor F1 protein-coding 68307 Mm.389425 NM_026668 ENSMUSG00000027703 Lrriq4 4930558O21Rik - 3|3 A3 leucine-rich repeats and IQ motif containing 4 protein-coding 53664 D7Hd3 D7Hd3U - - DNA segment, Chr 7, Heidelberg 3 unknown 108226 Hmgb1-rs23 Hmg1-rs23 - - high mobility group box 1, related sequence 23 pseudo 209018 Mm.235683 NM_145948 ENSMUSG00000033653 Vps8 AI315068|AU040738|mKIAA0804 - 16|16 B1 VPS8 CORVET complex subunit protein-coding 269702 Mm.60224 NM_001081323 ENSMUSG00000038126 Mphosph9 4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9 - 5|5 F M-phase phosphoprotein 9 protein-coding 105278 Mm.74982 NM_053180 ENSMUSG00000021483 Cdk20 4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42 - 13|13 B3 cyclin-dependent kinase 20 protein-coding 235661 Mm.128627 NM_146229 ENSMUSG00000032435 Dync1li1 1110053F02Rik|Dnclic1|LIC-1 - 9|9 F3 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 239827 Mm.440388 NM_172822 ENSMUSG00000045625 Pigz F630022B06Rik - 16|16 B2 phosphatidylinositol glycan anchor biosynthesis, class Z protein-coding 18618 Mm.2731 NM_008819 ENSMUSG00000000301 Pemt PEAMT|PEMT2|PLMT|Pempt|Pempt2 - 11 B1.3|11 37.81 cM phosphatidylethanolamine N-methyltransferase protein-coding 30057 Mm.335149 NM_013897 ENSMUSG00000039016 Timm8b Tim8b - 9|9 A5.3 translocase of inner mitochondrial membrane 8B protein-coding 102634483 XR_866762 LOC102634483 - - 2 F3 60S ribosomal protein L29 pseudogene pseudo 100502825 Mm.361657 NM_001271590 Rpl37rt EyeLinc4|Gm13826 - 5 F|5 55.99 cM ribosomal protein L37, retrotransposed protein-coding 100418480 Gm19238 - - 12|12 E phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene pseudo 606547 Gm6073 EG606547|Ppia-ps3_416.1 - 3|3 C peptidylprolyl isomerase A pseudogene 3_416.1 pseudo 108169099 LOC108169099 - - 5 E3 PRAME family member 8-like pseudo 13674 Eif4a-ps4 - - 1|1 C2 eukaryotic translation initiation factor 4A, pseudogene 4 pseudo 77652 Mm.460572 NM_029952 ENSMUSG00000094441 Zfp955a AI842447|Zfp883a - 17|17 B1 zinc finger protein 955A protein-coding 102640513 Gm36554 - - 6|6 predicted gene, 36554 ncRNA 109763 Pol23 Pol-23 - - viral polymerase 23 protein-coding 56808 Mm.273084 NM_020263 ENSMUSG00000010066 Cacna2d2 Cacna2d|a2d2|du|mKIAA0558|td|torpid - 9 F1|9 58.02 cM calcium channel, voltage-dependent, alpha 2/delta subunit 2 protein-coding 72677 Mm.245636 NR_036594 ENSMUSG00000100891 2810049E08Rik - - 13|13 C3 RIKEN cDNA 2810049E08 gene ncRNA 171531 Mm.105208 NM_053015 ENSMUSG00000026303 Mlph 2210418F23Rik|5031433I09Rik|AW228792|D1Wsu84e|Slac-2a|l(1)-3Rk|l1Rk3|ln - 1 D|1 45.73 cM melanophilin protein-coding 360131 Gnb1-ps3 - - 8|8 C5 guanine nucleotide binding protein (G protein), beta 1, pseudogene 3 pseudo 319609 Mm.137839 NM_176961 9330132A10Rik - - 18|18 E4 RIKEN cDNA 9330132A10 gene unknown 15976 Mm.6834 NM_010509 ENSMUSG00000022971 Ifnar2 AI747302|Ifnar-2 - 16 C3.3|16 52.82 cM interferon (alpha and beta) receptor 2 protein-coding 108934 Mm.38578 NM_001135577 ENSMUSG00000091264 Smim13 2900036K02Rik - 13 A3.3|13 small integral membrane protein 13 protein-coding 97897 Mm.183821 C86273 - - - expressed sequence C86273 protein-coding 100038439 Mm.387569 NR_045881 ENSMUSG00000097043 Gm10556 - - 18 A1|18 predicted gene 10556 ncRNA 212168 Mm.117094 NM_172503 ENSMUSG00000035671 Zswim4 D330002I24|E130119J17Rik - 8|8 C2 zinc finger SWIM-type containing 4 protein-coding 102635123 XR_379726 Gm32542 - - 9 E3.3|9 predicted gene, 32542 ncRNA 100038712 Mm.474908 NR_033536 ENSMUSG00000097316 Gm10516 - - 1 H6|1 predicted gene 10516 ncRNA 20702 Mm.439692 NM_009245 ENSMUSG00000079015 Serpina1c Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3 - 12 E|12 52.98 cM serine (or cysteine) peptidase inhibitor, clade A, member 1C protein-coding 100418311 Gm14800 - - X|X C3 heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene pseudo 104662 Mm.220843 NM_177325 ENSMUSG00000038335 Tsr1 AU040765|AW550801|mKIAA1401 - 11|11 B5 TSR1 20S rRNA accumulation protein-coding 100044627 XM_003688758 LOC100044627 - - 17|17 60S ribosomal protein L23 protein-coding 50932 Mm.42967 NM_016713 ENSMUSG00000020827 Mink1 B55|MINK|Map4k6|Ysk2 - 11|11 B3 misshapen-like kinase 1 (zebrafish) protein-coding 61468 D7Mit101 - - 7 69.01 cM DNA segment, Chr 7, Massachusetts Institute of Technology 101 unknown 20024 Mm.41746 NM_011294 ENSMUSG00000022205 Sub1 AI842364|P15|P9|Pc4|Rpo2tc1 - 15|15 A1 SUB1 homolog (S. cerevisiae) protein-coding 77250 9430019H13Rik - - 6|6 RIKEN cDNA 9430019H13 gene protein-coding 546710 Gm5969 EG546710 - 18|18 B1 eukaryotic translation initiation factor pseudogene pseudo 69750 Mm.439063 NR_045428 ENSMUSG00000100572 2410021H03Rik - - 17|17 E1.3 RIKEN cDNA 2410021H03 gene ncRNA 103324 NM_001134872 Gm4735 EG103324|Gm13699 - 2|2 C3 putative Eno1 pseudogene pseudo 100417553 Gm18685 - - 15|15 E3 tetratricopeptide repeat domain 5 pseudogene pseudo 53164 1f8f121092 - - - DNA segment, 1f8f121092 unknown 100504555 Gm12819 - - 4 D1|4 51.53 cM selection and upkeep of intraepithelial T-cells protein 4-like pseudo 109820 Mm.22957 NM_025973 ENSMUSG00000023987 Pgc 2210410L06Rik|Upg-1|Upg1 - 17 C|17 23.98 cM progastricsin (pepsinogen C) protein-coding 493051 Fcsa6 - - 7 35.28 cM femoral cross-sectional area 6 unknown 102631549 XR_375365 Gm29859 - - 2 H3|2 predicted gene, 29859 ncRNA 61443 D6Mit119 - - 6 24.4 cM DNA segment, Chr 6, Massachusetts Institute of Technology 119 unknown 102467451 n-TAagc11 n-Ta11 - 13 A3.1|13 nuclear encoded tRNA alanine 11 (anticodon AGC) tRNA 780830 Ighv3-7 - - 12|12 F1 immunoglobulin heavy variable V3-7 pseudo 70484 Mm.133731 NM_001001321 ENSMUSG00000033114 Slc35d2 5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8 - 13|13 B3 solute carrier family 35, member D2 protein-coding 102638671 LOC102638671 - - 2 C3 ubiquitin-conjugating enzyme E2 variant 2 pseudogene pseudo 19569 Rb(5.15)12Tu Rb12Tu - - Robertsonian translocation, Chr 5 and 15, Tubingen 12 other 100038668 Mm.404347 Gm12526 - - 4 B3|4 predicted gene 12526 ncRNA 100035933 Earheal2 - - 4 70.47 cM ear healing QTL 2 unknown 108150743 LOC108150743 - - 13 B3 Ptch1 Hedgehog-responsive enhancers biological-region 111794 Iapls3-16 - - - intracisternal A particle, lymphocyte specific 3-16 other 99929 Mm.246398 NM_178892 ENSMUSG00000034640 Tiparp ARTD14|AW558171|PARP7 - 3|3 E1 TCDD-inducible poly(ADP-ribose) polymerase protein-coding 433745 Gm12816 - - 4|4 D1 predicted gene 12816 pseudo 100048142 Gm20570 - - 18|18 E3 thymosin, beta 10 pseudogene pseudo 93892 Mm.348053 NM_053146 ENSMUSG00000044022 Pcdhb21 Pcdhb18|PcdhbU - 18|18 B3 protocadherin beta 21 protein-coding 259010 Mm.451672 NM_147008 ENSMUSG00000094488 Olfr393 MOR135-7 - 11|11 B4 olfactory receptor 393 protein-coding 102638080 Mm.444285 XR_880459 Gm16226 - - 5 E4|5 48.46 cM predicted gene 16226 ncRNA 110864 Fert1 - - - fer (fms/fps related) protein kinase, testis specific 1 protein-coding 111435 Emv30 Emv-30 - - endogenous ecotropic MuLV 30 other 213012 Mm.247453 NM_172511 ENSMUSG00000033157 Abhd10 - - 16|16 B5 abhydrolase domain containing 10 protein-coding 108168878 XR_001783911 Gm21956 - - 3 F1|3 predicted gene, 21956 ncRNA 102635629 XR_880090 Gm32917 - - 11 C|11 predicted gene, 32917 ncRNA 17084 Mm.2639 NM_010745 ENSMUSG00000021423 Ly86 MD-1|MD1|ly86_tv2 - 13|13 A3.3 lymphocyte antigen 86 protein-coding 72207 1700003K11Rik - - 14|14 RIKEN cDNA 1700003K11 gene protein-coding 109279856 LOC109279856 Mm34 - - VISTA enhancer mm34 biological-region 668026 Gm8932 EG668026 - 16|16 C1.1 programmed cell death 6 interacting protein pseudogene pseudo 108956 Mm.86391 NM_175391 ENSMUSG00000044309 Apol7c 2210421G13Rik - 15|15 E1 apolipoprotein L 7c protein-coding 100035397 Blct3 - - - blood cell traits 3 unknown 100417010 Gm18360 - - 7|7 D3 vomeronasal 2, receptor 28 pseudogene pseudo 67328 Mm.158148 NM_026092 ENSMUSG00000024233 Lyzl1 1700038F02Rik|Lyc2|Lyzd1 - 18|18 A1 lysozyme-like 1 protein-coding 791352 Mm.483438 Gm9930 - - - predicted gene 9930 unknown 16598 Mm.26938 NM_008452 ENSMUSG00000055148 Klf2 Lklf - 8|8 B3.3 Kruppel-like factor 2 (lung) protein-coding 111582 Pmv14 Pmv-14 - - polytropic murine leukemia virus 14 other 74585 Mm.355894 NM_029012 ENSMUSG00000029550 Sppl3 4833416I09Rik|Psl4|Usmg3 - 5|5 F signal peptide peptidase 3 protein-coding 117569 DXMgc92 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 92 unknown 76198 Mm.400354 6330576A10Rik - - 14|14 RIKEN cDNA 6330576A10 gene protein-coding 20664 Mm.39088 NM_009233 ENSMUSG00000096014 Sox1 BB176347|Sox-1 - 8 A1.1|8 5.73 cM SRY (sex determining region Y)-box 1 protein-coding 111511 Pmv7 Pmv-7 - - polytropic murine leukemia virus 7 other 70412 2900002J02Rik - - 19|19 RIKEN cDNA 2900002J02 gene protein-coding 55983 Mm.321654 NM_018884 ENSMUSG00000035357 Pdzrn3 1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3 - 6|6 D3 PDZ domain containing RING finger 3 protein-coding 108960 Mm.152142 NM_172161 ENSMUSG00000060477 Irak2 6330415L08Rik|AI649099|IRAK-2 - 6 E3|6 52.82 cM interleukin-1 receptor-associated kinase 2 protein-coding 105245427 Gm40883 - - 12|12 predicted gene, 40883 ncRNA 258410 Mm.484702 NM_146415 ENSMUSG00000070460 Olfr291 MOR254-2 - 7|7 D3 olfactory receptor 291 protein-coding 102638128 XR_384446 Gm34765 - - 15 F1|15 predicted gene, 34765 ncRNA 15469 Mm.27545 NM_019830 ENSMUSG00000109324 Prmt1 6720434D09Rik|AW214366|Hrmt1l2|Mrmt1 - 7 B3|7 29.07 cM protein arginine N-methyltransferase 1 protein-coding 21353 Mm.244393 NM_011529 ENSMUSG00000064289 Tank C86182|E430026L09Rik|I-TRAF - 2|2 C1.3 TRAF family member-associated Nf-kappa B activator protein-coding 66185 Mm.331487 NM_001081183 ENSMUSG00000040720 Virma 1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429 - 4|4 A1 vir like m6A methyltransferase associated protein-coding 102637187 XR_388944 Gm34064 - - 11 C|11 predicted gene, 34064 ncRNA 112337 Cara1 D2Ucd2-ash - - carcass ash in high growth mice 1 unknown 320440 Mm.483129 NM_177159 9530091C08Rik - - 9|9 C RIKEN cDNA 9530091C08 gene ncRNA 61488 D7Mit175 - - 7 88.15 cM DNA segment, Chr 7, Massachusetts Institute of Technology 175 unknown 102633087 XR_377176 Gm30998 - - 5 G2|5 predicted gene, 30998 ncRNA 218506 Mm.30208 NM_173757 ENSMUSG00000041632 Mrps27 2610028H14Rik - 13|13 D1 mitochondrial ribosomal protein S27 protein-coding 68625 Mm.256495 NM_026789 ENSMUSG00000028730 Cfap57 1110020C03Rik|AV009650|C130004B06Rik|Gm1363|Wdr65 - 4|4 D2.1 cilia and flagella associated protein 57 protein-coding 100798 Mm.442283 AU017193 - - - expressed sequence AU017193 unknown 75090 Mm.292232 NR_045975 ENSMUSG00000086263 4930519D14Rik - - 13|13 A3.2 RIKEN cDNA 4930519D14 gene ncRNA 71739 1200015M12Rik - - 19|19 RIKEN cDNA 1200015M12 gene protein-coding 62906 D10Mit209 - - 10 44.05 cM DNA segment, Chr 10, Massachusetts Institute of Technology 209 unknown 627813 Trdv1 Gm13895 - 14 C2|14 T cell receptor delta variable 1 other 97599 C79997 - - - expressed sequence C79997 protein-coding 258379 Mm.377467 NM_146381 ENSMUSG00000108931 Olfr1284 MOR245-13 - 2|2 E3 olfactory receptor 1284 protein-coding 105246652 XR_878339 Gm41910 - - 1 C5|1 predicted gene, 41910 ncRNA 15295 Hmgb1-ps3 EG654442|Gm12662|Hmg-C|Hmg1-rs15|Hmgb1-rs15 - 11|11 B3 high mobility group box 1, pseudogene 3 pseudo 71448 Mm.248960 NM_027797 ENSMUSG00000025505 Tmem80 5530601I19Rik - 7|7 F5 transmembrane protein 80 protein-coding 100035296 Rbcq3 - - 11 42.88 cM red blood cell QTL 3 unknown 17898 Mm.46514 NM_022879 ENSMUSG00000020469 Myl7 MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A - 11 A1|11 3.88 cM myosin, light polypeptide 7, regulatory protein-coding 62038 D5Mit424 - - 5 60.44 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 424 unknown 109412 Szs6 - - 5 44.32 cM seizure susceptibility 6 unknown 668413 Gm9158 EG668413 - 12 A1.2|12 predicted gene 9158 pseudo 105246452 XR_877454 Gm15345 - - 18 D3|18 30.93 cM predicted gene 15345 ncRNA 630270 Ighv4s2 - - 12|12 Ig heavy chain V region other 83771 Mm.358792 NM_031872 ENSMUSG00000029072 Tas1r3 Sac|T1r3 - 4 E2|4 87.65 cM taste receptor, type 1, member 3 protein-coding 225010 Mm.329194 NM_001081071 ENSMUSG00000054469 Lclat1 AI181996|Agpat8|Alcat1|Gm91|Lycat - 17|17 E1.3-E2 lysocardiolipin acyltransferase 1 protein-coding 104271 Mm.280624 NM_031374 ENSMUSG00000009628 Tex15 2210014E14Rik|AL022622|AU022940 - 8|8 A3 testis expressed gene 15 protein-coding 109280033 LOC109280033 Mm260 - - VISTA enhancer mm260 biological-region 62125 D13Mit16 - - 13 7.26 cM DNA segment, Chr 13, Massachusetts Institute of Technology 16 unknown 665892 Bod1-ps EG665892|Gm7843 - 16 A3|16 biorientation of chromosomes in cell division 1, pseudogene pseudo 100039170 Gm2080 - - 8|8 A4 a disintegrin and metallopeptidase domain 39 pseudogene pseudo 639910 Mm.424428 NM_001039648 ENSMUSG00000096323 Gm20767 - - 13 D2.3|13 predicted gene, 20767 protein-coding 100036353 Pbat2 Pbat-2 - 8 16.6 cM platelet-binding antibody-associated thrombocytopenia 2 unknown 381759 Mm.20593 NM_201370 ENSMUSG00000037159 Wee2 Gm1065|Wee1B - 6|6 B1 WEE1 homolog 2 (S. pombe) protein-coding 240219 Gm4949 EG240219 - 18|18 B3 glutamate-ammonia ligase (glutamine synthetase) pseudogene pseudo 101831 Mm.389855 NM_178643 ENSMUSG00000030493 Faap24 AW124591|AW538696|C230052I12Rik - 7|7 B2 Fanconi anemia core complex associated protein 24 protein-coding 102443350 Mm.292904 NM_001286689 ENSMUSG00000099481 Xndc1 Xndr - 7 E2 Xrcc1 N-terminal domain containing 1 protein-coding 52918 D17Ph4e - - - DNA segment, Chr 17, Institute for Molecular Genetics, Praha-4 expressed unknown 100302110 Gm17808 - - 6|6 F3 metaxin 1 pseudogene pseudo 620110 Gm13666 - - 2|2 C3 ribosomal protein L7A pseudogene pseudo 171225 Mm.377184 NM_134191 ENSMUSG00000042848 Vmn1r226 V1re2 - 17|17 A3.2 vomeronasal 1 receptor 226 protein-coding 70363 Mm.126450 NM_177819 ENSMUSG00000036800 Fam135b 1700010C24Rik|A830008O07Rik - 15|15 D3 family with sequence similarity 135, member B protein-coding 76714 Mm.410865 XR_001783136 1700040G22Rik - - - RIKEN cDNA 1700040G22 gene ncRNA 100035564 Kidpq2 Kid%q2 - - kidney weight percentage QTL 2 unknown 12648 Mm.8137 NM_007690 ENSMUSG00000023852 Chd1 4930525N21Rik|AI851787|AW555109 - 17 A2|17 8.95 cM chromodomain helicase DNA binding protein 1 protein-coding 59003 Mm.138617 NM_021500 ENSMUSG00000079562 Maea 1110030D19Rik|EMP|Gid9 - 5|5 B1 macrophage erythroblast attacher protein-coding 100416033 Gm17881 - - 17|17 A1 fibrillarin pseudogene pseudo 102640453 XR_384473 Gm36510 - - 15 F3|15 predicted gene, 36510 ncRNA 102634724 XR_382106 Gm32242 - - 13 A2|13 predicted gene, 32242 ncRNA 61323 D3Mit178 - - 3 14.27 cM DNA segment, Chr 3, Massachusetts Institute of Technology 178 unknown 102634684 XR_872288 Gm32213 - - 11 A3.1|11 predicted gene, 32213 ncRNA 100134861 Mm.227738 NR_004843 ENSMUSG00000116461 Gm44502 BC090627|Chkb-Cpt1b|ChkbCpt1b|Chkbcpt1b - 15|15 E3 predicted readthrough transcript (NMD candidate), 44502 ncRNA 102633322 Mm.224993 XR_379699 A730094K22Rik - - 9|9 E3.2 RIKEN cDNA A730094K22 gene ncRNA 105243887 XR_872315 Gm39612 - - 11 A3.2|11 predicted gene, 39612 ncRNA 102638860 Gm35322 - - 19|19 predicted gene, 35322 ncRNA 105246472 XR_877493 Gm41757 - - 18 E1|18 predicted gene, 41757 ncRNA 66645 Mm.20129 NM_025682 ENSMUSG00000021938 Pspc1 5730470C09Rik|AI327109|AI449052|PSP1 - 14|14 C3 paraspeckle protein 1 protein-coding 105244313 Gm39947 - - 2|2 predicted gene, 39947 ncRNA 668977 Gm9430 EG668977 - X|X A1.1 predicted gene 9430 pseudo 102467599 n-TSgga1 n-Ts23 - 11 D|11 nuclear encoded tRNA serine 1 (anticodon GGA) tRNA 97285 X98549 - - - expressed sequence X98549 unknown 244152 Mm.25317 NM_001024619 ENSMUSG00000049580 Tsku 9530051K01Rik|E2ig4|Lrrc54|Tsk - 7|7 E1 tsukushi, small leucine rich proteoglycan protein-coding 100125842 Tbqt1 - - - tibia bone quality traits 1 unknown 105245108 XR_871461 Gm40602 - - 10 A2|10 predicted gene, 40602 ncRNA 98238 Mm.172720 NM_133807 ENSMUSG00000020869 Lrrc59 AA959742|C78668 - 11|11 D leucine rich repeat containing 59 protein-coding 108035 Ahcy-rs2 - - - S-adenosylhomocysteine hydrolase, related sequence 2 protein-coding 78364 0610037L18Rik - - - RIKEN cDNA 0610037L18 gene protein-coding 62748 D17Mit207 - - 17 50.3 cM DNA segment, Chr 17, Massachusetts Institute of Technology 207 unknown 433323 Mm.276248 NM_001004173 ENSMUSG00000032908 Sgpp2 SPPase2|Spp2 - 1|1 C4 sphingosine-1-phosphate phosphotase 2 protein-coding 102631509 Gm13307 - - 4|4 22.11 cM predicted gene 13307 ncRNA 211347 Mm.255044 NM_145962 ENSMUSG00000018846 Pank3 - - 11|11 A4 pantothenate kinase 3 protein-coding 77763 XM_001477721 Gm9736 - - 10 C1|10 predicted gene 9736 protein-coding 235339 Mm.285076 NM_145614 ENSMUSG00000000168 Dlat 6332404G05Rik|DLTA|PDC-E2 - 9|9 A5.3 dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) protein-coding 68095 Mm.247039 NM_023429 ENSMUSG00000029152 Ociad1 6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018 - 5|5 C3.2 OCIA domain containing 1 protein-coding 105259 AU015559 - - - expressed sequence AU015559 unknown 102637807 XR_382709 Gm34526 - - 13 C3|13 predicted gene, 34526 ncRNA 100035747 Bel - - - brain etomidate level unknown 100043386 Gm4405 - - 7 B1|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 432436 Mm.244553 NM_001004162 ENSMUSG00000056716 Gm5420 EG432436 - 10 A3|10 predicted gene 5420 ncRNA 12931 Mm.335584 NM_018827 ENSMUSG00000007888 Crlf1 CLF-1|CRLM-3|CRLM3|NR6|NR6.1 - 8 B3.3|8 34.15 cM cytokine receptor-like factor 1 protein-coding 72813 Mm.409034 NR_029441 ENSMUSG00000100876 2810454H06Rik - - 6|6 G1 RIKEN cDNA 2810454H06 gene ncRNA 56736 Mm.228903 NM_020012 ENSMUSG00000060450 Rnf14 2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2 - 18 B3|18 20.2 cM ring finger protein 14 protein-coding 105785 Mm.298199 NM_134090 ENSMUSG00000010830 Kdelr3 AI173274 - 15|15 E1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 protein-coding 71722 Mm.28833 NM_027882 ENSMUSG00000005442 Cic 1200010B10Rik|mKIAA0306 - 7|7 A3 capicua transcriptional repressor protein-coding 62019 D4Mit336 - - 4 61.52 cM DNA segment, Chr 4, Massachusetts Institute of Technology 336 unknown 100952 Mm.286375 NM_133918 ENSMUSG00000029163 Emilin1 5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115 - 5|5 B1 elastin microfibril interfacer 1 protein-coding 30964 Rps12-ps1 EG668406|Gm9153|Rps12-ps25|pS12X - X|X D ribosomal protein S12, pseudogene 1 pseudo 666012 Gm7891 EG666012 - 1|1 D predicted gene 7891 pseudo 67874 Mm.27086 NM_023396 ENSMUSG00000075334 Rprm 2410012A13Rik|Reprimo - 2|2 C1.1 reprimo, TP53 dependent G2 arrest mediator candidate protein-coding 18393 Mm.3411 NM_008765 ENSMUSG00000026037 Orc2 AU041563|Orc2l - 1|1 C1.3 origin recognition complex, subunit 2 protein-coding 62683 D16Mit117 - - 16 41.85 cM DNA segment, Chr 16, Massachusetts Institute of Technology 117 unknown 102640991 Mm.440774 XR_873226 Gm16984 - - 13 A3.3|13 14.23 cM predicted gene, 16984 ncRNA 61035 D8Mit157 - - 8 3.86 cM DNA segment, Chr 8, Massachusetts Institute of Technology 157 unknown 546752 Gm5977 - - 12 A1.2|12 predicted gene 5977 pseudo 107974 H2-T23l - - - histocompatibility 2, T region locus 23 like protein-coding 116926 D13Jde13 - - - DNA segment, Chr 13, Jan Deussing 13 unknown 328789 Mm.284760 NM_026571 ENSMUSG00000062252 Lhfpl5 9330179O15Rik|Tmhs|hscy - 17 A3.3|17 14.77 cM lipoma HMGIC fusion partner-like 5 protein-coding 56176 Mm.474449 NM_019543 ENSMUSG00000022940 Pigp Dcrc|Dscr5 - 16|16 C4 phosphatidylinositol glycan anchor biosynthesis, class P protein-coding 100042763 Gm4017 - - Y A1|Y predicted gene 4017 pseudo 241576 Mm.489740 NM_178886 ENSMUSG00000048058 Ldlrad3 6430500P08|AI194318|Lrad3 - 2|2 E2 low density lipoprotein receptor class A domain containing 3 protein-coding 100036125 Slms1 - - - sensitivity to locomotor stimulants 1 unknown 73102 Mm.23932 NM_001033167 ENSMUSG00000038267 Slc22a23 3110004L20Rik - 13|13 A3.3 solute carrier family 22, member 23 protein-coding 102637414 Gm34227 - - 1|1 predicted gene, 34227 ncRNA 102637845 XR_872825 Gm34552 - - 12 C3|12 predicted gene, 34552 ncRNA 667994 Gm8917 EG667994 - 10|10 B1 predicted gene 8917 protein-coding 665567 Gm7692 EG665567 - 9|9 A2 predicted gene 7692 pseudo 102635402 XR_375693 Gm32753 - - 3 D|3 predicted gene, 32753 ncRNA 101894 AW742548 - - - expressed sequence AW742548 unknown 68514 Mm.26834 NM_028643 ENSMUSG00000021973 Micu2 1110008L20Rik|4833427E09Rik|AU041871|Efha1|Smhs2 - 14|14 C3 mitochondrial calcium uptake 2 protein-coding 69702 Mm.5390 NM_027175 ENSMUSG00000027305 Ndufaf1 2410001M24Rik|CGI-65|CIA30 - 2|2 E5 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 protein-coding 74959 Mm.417819 NR_040322 ENSMUSG00000086454 Platr14 4930500J02Rik - 2|2 E2 pluripotency associated transcript 14 ncRNA 231103 Mm.100043 NM_144909 ENSMUSG00000059434 Gckr GKRP - 5 B1|5 17.27 cM glucokinase regulatory protein protein-coding 67224 Mm.41647 NM_026042 ENSMUSG00000003444 Med29 2810405O22Rik|AU020902|Ixl - 7|7 B1 mediator complex subunit 29 protein-coding 97332 C87482 - - - expressed sequence C87482 unknown 102642252 Mm.351752 LOC102642252 IgH|IgVH - - uncharacterized LOC102642252 protein-coding 18105 Mm.264036 NM_020282 ENSMUSG00000046949 Nqo2 NMO2|Nmor2|Ox2 - 13 A3.3|13 14.01 cM N-ribosyldihydronicotinamide quinone reductase 2 protein-coding 105244516 XR_867532 Gm40110 - - 3 F2.2|3 predicted gene, 40110 ncRNA 102639262 XR_382030 Gm35615 - - 13 A1|13 predicted gene, 35615 ncRNA 76117 Mm.217350 NM_153820 ENSMUSG00000049744 Arhgap15 5830480G12Rik - 2|2 B Rho GTPase activating protein 15 protein-coding 100048823 LOC100048823 - - - RNA-binding protein with multiple splicing 2-like pseudo 620454 Gm6153 EG620454 - 1|1 D predicted gene 6153 pseudo 60689 D4Mit144 - - - DNA segment, Chr 4, Massachusetts Institute of Technology 144 unknown 21648 Mm.1948 NM_009342 ENSMUSG00000096255 Dynlt1b AGS2|Dynlt1|Tctex-1|Tctex1 - 17 A1|17 3.97 cM dynein light chain Tctex-type 1B protein-coding 100503951 Selenok-ps5 Gm19985 - 13 B3|13 32.74 cM selenoprotein K, pseudogene 5 pseudo 102465639 NR_106023 ENSMUSG00000098960 Mir7056 Gm27696|mmu-mir-7056 - 7|7 B3 microRNA 7056 ncRNA 74653 Mm.17631 NM_029037 ENSMUSG00000037251 Pomk 4930444A02Rik|Sgk196 - 8|8 A2 protein-O-mannose kinase protein-coding 723923 NR_030273 ENSMUSG00000076041 Mir20b Mirn20b|mir-20b|mmu-mir-20b - X A5|X microRNA 20b ncRNA 108169015 Gm46896 - - 4 E1|4 predicted gene, 46896 pseudo 109518 Alcp22 - - - alcohol preference locus 22, female specific unknown 112235 Par3 - - 12 37.16 cM pulmonary adenoma resistance 3 unknown 630887 Gm12814 - - 4|4 D1 predicted gene 12814 pseudo 102467393 n-TWcca5 n-Tw5 - 11 B2|11 nuclear encoded tRNA trytophan 5 (anticodon CCA) tRNA 56044 Mm.27348 NM_019491 ENSMUSG00000008859 Rala 3010001O15Rik|AW322615|Ral|Rasl1 - 13 A2|13 6.05 cM v-ral simian leukemia viral oncogene A (ras related) protein-coding 105243517 Gm39415 - - 9|9 predicted gene, 39415 ncRNA 67364 Mm.245984 1700121C10Rik - - 8|8 C5 RIKEN cDNA 1700121C10 gene protein-coding 387220 NR_029746 ENSMUSG00000065444 Mir27a Mirn27a|mir-27a|mmu-mir-27a - 8|8 C2 microRNA 27a ncRNA 22297 Mm.431981 NM_011684 ENSMUSG00000044248 Vmn1r45 V1RA9|V1r2|V1ra11|V1ra2|mV1R2 - 6|6 D1 vomeronasal 1 receptor 45 protein-coding 231699 Mm.379383 NM_145210 ENSMUSG00000066867 Oas1e C87484|oasl7 - 5 F|5 60.64 cM 2'-5' oligoadenylate synthetase 1E protein-coding 73034 2900064B16Rik - - 13|13 RIKEN cDNA 2900064B16 gene protein-coding 102635952 XR_001784291 Gm33159 - - 4 B1|4 predicted gene, 33159 ncRNA 666504 Mm.399538 XM_017316815 Tmem249 EG666504|Gm8140 - 15|15 D3 transmembrane protein 249 protein-coding 102642392 XR_880111 Gm38610 - - 11 C|11 predicted gene, 38610 ncRNA 72750 Mm.258250 NM_001037725 ENSMUSG00000041040 Fam117b 2810425F24Rik|6330416D14Rik|Als2cr13 - 1|1 C2 family with sequence similarity 117, member B protein-coding 105245011 XR_870827 Gm40525 - - 9 B|9 predicted gene, 40525 protein-coding 110869 Cirbp-rs2 Cirp-rs2 - - cold inducible RNA binding protein, related sequence 2 protein-coding 17134 Mm.268010 NM_010756 ENSMUSG00000051510 Mafg AA545192|C630022N07Rik - 11 E2|11 84.35 cM v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian) protein-coding 399606 D230007G03Rik - - - RIKEN cDNA D230007G03 gene protein-coding 112136 Bgeq13 - - 14 31.49 cM body growth early QTL 13 unknown 68133 Mm.258462 NM_026572 ENSMUSG00000034424 Gcsh 1100001L02Rik|5730591C18Rik - 8|8 E1 glycine cleavage system protein H (aminomethyl carrier) protein-coding 402740 Mm.447532 C030010F05Rik - - 13|13 RIKEN cDNA C030010F05 gene protein-coding 333184 Gm5130 EG333184 - 7|7 A1 predicted gene 5130 pseudo 78875 B230206L23Rik - - 3|3 RIKEN cDNA B230206L23 gene protein-coding 102637885 Gm28886 - - Y|Y predicted gene 28886 protein-coding 544737 Mm.431239 XR_168473 ENSMUSG00000097185 Gm26596 - - 10|10 D2 predicted gene, 26596 unknown 102633744 XR_379216 Gm31497 - - 9 A4|9 predicted gene, 31497 ncRNA 23986 Mm.491141 NM_011868 ENSMUSG00000021417 Eci2 Acbd2|Drs1|Hca88|Peci - 13|13 A3.3 enoyl-Coenzyme A delta isomerase 2 protein-coding 109280098 LOC109280098 Mm922 - - VISTA enhancer mm922 biological-region 102636554 XM_006496390 Als2cr11b Gm33589 - 1 C1.3|1 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11B protein-coding 207318 Mm.328431 NR_152261 Gm4750 EG207318|EyeLinc8 - X|X F3 actin, beta pseudogene pseudo 18371 Olfr7 M71|MOR171-2 - - olfactory receptor 7 complex other 108566 Iapls1-54 - - - intracisternal A particle, lymphocyte specific 1-54 other 108167653 XR_001779175 Gm46113 - - 9 A5.3|9 predicted gene, 46113 ncRNA 258831 Mm.424089 NM_146834 ENSMUSG00000092077 Olfr101 MOR250-2 - 17|17 B1 olfactory receptor 101 protein-coding 665017 Gm7450 EG665017 - 17|17 A2 ornithine decarboxylase, structural 1 pseudogene pseudo 19619 Rb(8.17)38Lub Rb38Lub - - Robertsonian translocation, Chr 8 and 17, Lubeck 38 other 17196 Mm.252063 NM_010777 ENSMUSG00000041607 Mbp C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi - 18 E3|18 55.84 cM myelin basic protein protein-coding 102633297 XR_376724 Gm31157 - - 5 A1|5 predicted gene, 31157 ncRNA 102637803 Gm29581 - - Y|Y predicted gene 29581 ncRNA 102636848 XR_375040 Gm33804 - - 2 G1|2 predicted gene, 33804 ncRNA 11857 Mm.2241 NM_007486 ENSMUSG00000030220 Arhgdib D4|Gdid4|Ly-GDI - 6|6 G1 Rho, GDP dissociation inhibitor (GDI) beta protein-coding 105245233 Gm40717 - - 10|10 predicted gene, 40717 ncRNA 14700 Mm.41780 NM_025277 ENSMUSG00000038607 Gng10 AV006524 - 4 B3|4 32.36 cM guanine nucleotide binding protein (G protein), gamma 10 protein-coding 100125398 Femwf3 - - - femur work to failure 3 unknown 62628 D14Mit106 - - 14 50.9 cM DNA segment, Chr 14, Massachusetts Institute of Technology 106 unknown 110355 Mm.254144 NM_130863 ENSMUSG00000024858 Grk2 Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1 - 19 A|19 3.98 cM G protein-coupled receptor kinase 2 protein-coding 68981 Mm.22362 NM_021336 ENSMUSG00000030512 Snrpa1 1500015N06Rik - 7|7 C small nuclear ribonucleoprotein polypeptide A' protein-coding 17248 Mm.426531 NM_008575 ENSMUSG00000054387 Mdm4 4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx - 1 E4|1 57.75 cM transformed mouse 3T3 cell double minute 4 protein-coding 65103 Mm.37623 NM_022989 ENSMUSG00000026960 Arl6ip6 2310057C01Rik|2610529A11Rik|Aip-6 - 2|2 C1.1 ADP-ribosylation factor-like 6 interacting protein 6 protein-coding 76608 Mm.251420 NM_175244 ENSMUSG00000046861 Hectd3 1700064K09Rik|AI467540|AW743312 - 4|4 D1 HECT domain E3 ubiquitin protein ligase 3 protein-coding 102639928 XR_386643 Gm36126 - - 19 C1|19 predicted gene, 36126 ncRNA 231070 Mm.30221 NM_153526 ENSMUSG00000045294 Insig1 1810013C12Rik|Insig-1 - 5|5 B1 insulin induced gene 1 protein-coding 102634028 XR_382351 Gm31712 - - 13 A5|13 predicted gene, 31712 ncRNA 20658 Mm.46401 NM_019973 ENSMUSG00000022961 Son 2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp - 16 C3.3-C4|16 53.22 cM Son DNA binding protein protein-coding 100041727 Gm16412 EG633091 - X|X C1 SEC61, gamma subunit pseudogene pseudo 329973 Mm.384386 NM_183302 C630004L07Rik C630004L07 - 4 E1|4 RIKEN cDNA C630004L07 gene unknown 20406 Sh3d2c-ps1 SH3P13|Sh3d2c1|Sh3gl3 - 2 A3|2 15.68 cM SH3 domain protein 2C, pseudogene 1 pseudo 108444 Xmmv69 Xmmv-69|Xp-28 - - xenotropic-MCF leukemia virus 69 other 98108 C77405 C77505 - - expressed sequence C77405 protein-coding 109405 Sbw1 - - 1 56.52 cM splenomegaly-NZB x NZW 1 unknown 626995 Mm.425000 NM_001085541 ENSMUSG00000078508 Gm13128 - - 4|4 E1 predicted gene 13128 protein-coding 102634913 Mm.319094 NR_130314 ENSMUSG00000085125 Gm16070 - - 1 A3|1 5.32 cM predicted gene 16070 ncRNA 72638 Mm.443487 2810017D21Rik - - 4|4 RIKEN cDNA 2810017D21 gene protein-coding 258669 Mm.377631 NM_146674 ENSMUSG00000095804 Olfr824 MOR210-3 - 10|10 D3 olfactory receptor 824 protein-coding 57436 Mm.14638 NM_020590 ENSMUSG00000030161 Gabarapl1 3110025G09Rik|9130422N19Rik|AI196471|Apg8l|Atg8l|GECI|MNCb-0091 - 6|6 F3 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1 protein-coding 100302499 Mm.482651 NR_028079 ENSMUSG00000065016 Snora3 MBI-28 - 7|7 E3 small nucleolar RNA, H/ACA box 3 snoRNA 360106 D17Brg29 - - - DNA segment, Chr 17, David E. Bergstrom 29 unknown 105246611 XR_877971 Gm41878 - - 19 D3|19 predicted gene, 41878 ncRNA 100038972 Prss49 Gm1990 - 5 G2|5 protease, serine 49 protein-coding 257854 Gm20734 - - 2|2 D olfactory receptor GA_x5J8B7W2GLP-600-794 pseudo 100041136 Gm3157 - - 5|5 E5 oxysterol binding protein-like 9 pseudogene pseudo 272643 Mm.458525 NM_199471 ENSMUSG00000058398 Prss43 Gm661|Tessp3 - 9|9 F2 protease, serine 43 protein-coding 102635296 XR_378025 Gm32673 - - 6 F3|6 predicted gene, 32673 ncRNA 17079 Mm.373974 NM_008533 ENSMUSG00000021624 Cd180 F630107B15|Ly-78|Ly78|RP105 - 13|13 D1 CD180 antigen protein-coding 102635702 XR_389473 Gm32973 - - 5 E5|5 predicted gene, 32973 ncRNA 668739 XM_001003396 Frg2f7 EG668739|Gm9326 - 14|14 E2.3 FSHD region gene 2 family member 7 protein-coding 97834 C86865 - - - expressed sequence C86865 unknown 100416354 Gm18065 - - 13|13 A2 ribosomal protein 10 pseudogene pseudo 100041375 Mm.489591 NM_001105159 ENSMUSG00000075552 Cyp3a41b - - 5|5 G2 cytochrome P450, family 3, subfamily a, polypeptide 41B protein-coding 97615 Mm.381936 C86371 - - - expressed sequence C86371 protein-coding 56878 Mm.259667 NM_020296 ENSMUSG00000026970 Rbms1 2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1 - 2|2 C1.2 RNA binding motif, single stranded interacting protein 1 protein-coding 62805 D14Mit204 - - 14 43.7 cM DNA segment, Chr 14, Massachusetts Institute of Technology 204 unknown 102632401 XR_376100 Gm30484 - - 3 G3|3 predicted gene, 30484 ncRNA 62757 D17Mit187 - - 17 50.17 cM DNA segment, Chr 17, Massachusetts Institute of Technology 187 unknown 107790 Tel4p - - - telomeric sequence, Chr 4, centromere end protein-coding 102639428 XR_390023 LOC102639428 - - - uncharacterized LOC102639428 ncRNA 670671 Gm9497 - - 5|5 G2 predicted gene 9497 pseudo 66226 Mm.279752 NM_025432 ENSMUSG00000079317 Trappc2 1110066L09Rik|1810064C02Rik|AW496358|MIP-2A|Sedl|TRS20 - X|X F5 trafficking protein particle complex 2 protein-coding 109280121 LOC109280121 Mm1370 - - VISTA enhancer mm1370 biological-region 100049590 Fmtq5 - - - femur mechanical trait QTL 5 unknown 62895 D10Mit235 - - 10 67.3 cM DNA segment, Chr 10, Massachusetts Institute of Technology 235 unknown 231503 Mm.99790 NM_182841 ENSMUSG00000050640 Tmem150c - - 5|5 E4 transmembrane protein 150C protein-coding 102634881 XR_385099 Gm32358 - - 16 C4|16 predicted gene, 32358 ncRNA 109546 Och - - - ochre unknown 16234 In(10)6Rk-p In(10)6Rk|In6Rk - - inversion, Chr 10, Roderick 6, proximal other 110545 Ptma-rs8 - - - prothymosin alpha, related sequence 8 protein-coding 102637125 Gm28243 - - Y|Y predicted gene 28243 protein-coding 64058 Mm.28209 NM_022032 ENSMUSG00000019851 Perp 1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW - 10|10 A3 PERP, TP53 apoptosis effector protein-coding 102636096 XR_380546 ENSMUSG00000111941 Gm33263 - - 10 B5.3|10 predicted gene, 33263 ncRNA 100039706 Mm.260936 NR_046214 ENSMUSG00000092225 Gm2381 - - 7 B3|7 zinc finger protein 936 pseudogene pseudo 105246722 XR_878590 Gm41965 - - 1 F|1 predicted gene, 41965 ncRNA 100418413 Gm19194 - - 3|3 E2 alpha thalassemia/mental retardation syndrome X-linked homolog pseudogene pseudo 100038613 F830212C03Rik - - - RIKEN cDNA F830212C03 gene protein-coding 102634242 Gm31874 - - 4|4 predicted gene, 31874 ncRNA 100416918 Gm7371 EG664855 - 14|14 A3 prostaglandin D receptor pseudogene pseudo 383325 Gm5236 EG383325 - 18|18 C ribosomal protein large PO subunit pseudogene pseudo 103466 Mm.200446 NM_175331 ENSMUSG00000054027 Nt5dc3 AU040402|AW540062|C630002B14Rik|TU12B1-TY - 10|10 C1 5'-nucleotidase domain containing 3 protein-coding 102637734 XR_868772 Gm34470 - - 6 A1|6 predicted gene, 34470 ncRNA 434795 XM_486706 Gm5639 EG434795 - X|X A7.3 predicted pseudogene 5639 protein-coding 102631615 Gm29911 - - 18|18 predicted gene, 29911 ncRNA 102467376 n-TScga1 n-Ts12 - 13 A3.1|13 nuclear encoded tRNA serine 1 (anticodon CGA) tRNA 83924 Mm.379269 NM_031999 ENSMUSG00000021306 Gpr137b AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1 - 13 A1|13 5.24 cM G protein-coupled receptor 137B protein-coding 100036234 Aorls1 Artles2 - 10 39.72 cM aortic lesion size 1 unknown 546964 Mm.469898 NM_001105059 ENSMUSG00000091926 Vmn2r62 - - 7|7 B3 vomeronasal 2, receptor 62 protein-coding 100035446 Pstc1 - - - periosteal circumference 1 unknown 100931 Mm.398201 AW125646 - - - expressed sequence AW125646 unknown 102636395 XR_388116 Gm33471 - - 8 E1|8 predicted gene, 33471 ncRNA 105242812 XR_869570 Gm38921 - - 6 G3|6 predicted gene, 38921 ncRNA 105244403 XR_867099 Gm40017 - - 2 H4|2 predicted gene, 40017 ncRNA 243453 Igkv4-81 Gm460|IgVkag4 - 6|6 C1 immunoglobulin kappa variable 4-81 other 52861 D19Bwg0552e - - - DNA segment, Chr 19, Brigham & Women's Genetics 0552 expressed unknown 102635779 XR_373561 Gm33030 - - 1 C4|1 predicted gene, 33030 ncRNA 102636348 XR_381436 Gm33441 - - 12 A3|12 predicted gene, 33441 ncRNA 665116 Gm7499 EG665116 - 8|8 B2 RuvB-like protein 1 pseudogene pseudo 628236 NM_001323386 ENSMUSG00000079344 Lipo4 Gm6857 - 19 C1|19 lipase, member O4 protein-coding 27466 42T - - - DNA segment, 42T unknown 217306 Mm.222667 NM_172050 ENSMUSG00000048498 Cd300e BC034097|CLM2|Cd300le|TREM5 - 11|11 E2 CD300E molecule protein-coding 18783 Mm.4186 NM_008869 ENSMUSG00000056220 Pla2g4a Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha - 1 G1|1 63.51 cM phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 269181 Mm.25861 NM_173870 ENSMUSG00000026110 Mgat4a 9530018I07Rik|GnT-IVa|glcNAc-T-IVa - 1|1 B mannoside acetylglucosaminyltransferase 4, isoenzyme A protein-coding 57376 Mm.379086 NM_020618 ENSMUSG00000037935 Smarce1 2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27 - 11|11 D SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 69434 Mm.380736 NR_003145 ENSMUSG00000113722 Snhg10 1700026B20Rik|AI642517 - 12|12 E small nucleolar RNA host gene 10 ncRNA 102633301 XM_011240922 Gm31160 - - 5 G2|5 predicted gene, 31160 protein-coding 73349 Mm.393774 NR_038178 1700042G15Rik - - 4|4 B3 RIKEN cDNA 1700042G15 gene ncRNA 100038634 Mm.396621 Gm10657 - - - predicted gene 10657 protein-coding 108169009 XR_001784557 LOC108169009 - - 4 A5 protein FAM205A-like pseudo 105246463 Gm41749 - - 18|18 predicted gene, 41749 ncRNA 65956 Mm.407493 NM_023052 ENSMUSG00000096873 Ccl21c 6Ckine|CKb9|Ccl21b|SLC|Scya21|Scya21b|Scya21c|TCA4|exodus-2 - 4 A5|4 22.54 cM chemokine (C-C motif) ligand 21C (leucine) protein-coding 94180 Mm.20592 NM_053178 ENSMUSG00000032281 Acsbg1 BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185 - 9|9 A5.3 acyl-CoA synthetase bubblegum family member 1 protein-coding 11484 Mm.293574 NM_023113 ENSMUSG00000020774 Aspa Acy-2|Acy2|nur7 - 11|11 B4 aspartoacylase protein-coding 16468 Mm.25059 NM_021878 ENSMUSG00000038518 Jarid2 Jmj|jumonji - 13 A5|13 21.66 cM jumonji, AT rich interactive domain 2 protein-coding 110120480 LOC110120480 - - - VISTA enhancer mm1397 biological-region 66938 Mm.29813 NM_025856 ENSMUSG00000073758 Sh3d21 1700029G01Rik|AU019788 - 4|4 D2.2 SH3 domain containing 21 protein-coding 170574 Mm.263284 NM_130458 ENSMUSG00000060284 Sp7 6430578P22Rik|C22|Osx - 15|15 F3 Sp7 transcription factor 7 protein-coding 66673 Mm.70980 NM_025696 ENSMUSG00000063434 Sorcs3 6330404A12Rik|AW045579 - 19|19 D1 sortilin-related VPS10 domain containing receptor 3 protein-coding 83398 Mm.443908 NM_031186 ENSMUSG00000027977 Ndst3 4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3 - 3|3 G1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 protein-coding 17901 Mm.1000 NM_021285 ENSMUSG00000061816 Myl1 AI325107|MLC1f|MLC3f|Mylf - 1 C3|1 33.71 cM myosin, light polypeptide 1 protein-coding 100534326 Gm21931 - - 13|13 B3 predicted gene, 21931 pseudo 102634539 Gm12236 - - 11|11 33.12 cM predicted gene 12236 ncRNA 16352 ipv - - - imperforate vagina unknown 108168030 XR_001780686 Gm46378 - - 12 F1|12 predicted gene, 46378 ncRNA 668543 Gm12400 - - 3|3 F2.2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5 pseudogene pseudo 18515 Mm.390957 NM_017463 ENSMUSG00000034673 Pbx2 AU043397|G17 - 17|17 B1 pre B cell leukemia homeobox 2 protein-coding 97236 Mm.441754 C79130 - - - expressed sequence C79130 protein-coding 102632649 Gm30671 - - 9 A5.2|9 predicted gene, 30671 pseudo 16193 Mm.1019 NM_031168 ENSMUSG00000025746 Il6 Il-6 - 5 B1|5 15.7 cM interleukin 6 protein-coding 27504 222B5T - - - DNA segment, 222B5T unknown 18596 Mm.4146 NM_008809 ENSMUSG00000024620 Pdgfrb AI528809|CD140b|PDGFR-1|Pdgfr - 18 E1|18 34.41 cM platelet derived growth factor receptor, beta polypeptide protein-coding 105244918 XR_872816 Gm40440 - - 12 C3|12 predicted gene, 40440 ncRNA 216019 Mm.213213 NM_145419 ENSMUSG00000020080 Hkdc1 BC016235 - 10|10 B4 hexokinase domain containing 1 protein-coding 100417532 Gm18670 - - 10|10 C2 small nuclear ribonucleoprotein B pseudogene pseudo 12752 Mm.268930 NM_009907 ENSMUSG00000030720 Cln3 AI323623 - 7 F3|7 69.16 cM ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) protein-coding 668291 Marcksl1-ps5 EG668291|Gm9089|Mlp-rs5|Mrp-rs5 - X D|X MARCKS-like 1, pseudogene 5 pseudo 102634829 Gm28780 - - Y|Y predicted gene 28780 protein-coding 61220 D1Mit213 - - 1 22.88 cM DNA segment, Chr 1, Massachusetts Institute of Technology 213 unknown 320655 Mm.86519 NM_001033537 ENSMUSG00000038208 Pgap3 CAB2|D430035D22Rik|Perld1 - 11|11 D post-GPI attachment to proteins 3 protein-coding 433178 Mm.120009 NM_001039218 ENSMUSG00000051050 Spink14 EG433178|Gm5505 - 18|18 B3 serine peptidase inhibitor, Kazal type 14 protein-coding 106341 AU022867 - - - expressed sequence AU022867 unknown 21640 Mm.246559 Tcrg-V6 TRGV6 - 13 A2|13 T cell receptor gamma, variable 6 other 100035404 Mpcp8 - - - myeloid progenitor cell proliferation 8 unknown 100035473 Bmnx - - - body mass index unknown 68041 Mm.29429 NM_026524 ENSMUSG00000008035 Mid1ip1 3110038L01Rik|Mig12|S14R - X|X A1.1 Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish)) protein-coding 236954 Gm379 - - X|X D syntaxin 3 pseudogene pseudo 100124480 NR_030538 ENSMUSG00000078002 Mir880 Mirn880|mir-880|mmu-mir-880 - X A7.1|X microRNA 880 ncRNA 75176 Mm.444748 XR_877197 4930543D07Rik - - 18 A1|18 RIKEN cDNA 4930543D07 gene ncRNA 380612 Mm.444439 Rapgef4os3 4732447D17Rik - 2|2 C3 Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 3 protein-coding 100503546 Mm.207108 Gm15958 - - 18|18 39.36 cM predicted gene 15958 unknown 27459 56S - - - DNA segment, 56S unknown 102635189 XR_377782 ENSMUSG00000108015 Gm32591 Gm43878 - 6 C3|6 predicted gene, 32591 ncRNA 75268 4930554G03Rik - - 9|9 RIKEN cDNA 4930554G03 gene protein-coding 547176 Mm.302708 NM_001034907 ENSMUSG00000035045 Zc3h12b A130028J20Rik|CXorf32|Gm373 - X|X C3 zinc finger CCCH-type containing 12B protein-coding 100485 BB214985 - - - expressed sequence BB214985 unknown 22320 Mm.1838 NM_016794 ENSMUSG00000050732 Vamp8 AU041171|Edb|endobrevin - 6 C1|6 32.27 cM vesicle-associated membrane protein 8 protein-coding 75844 Mm.23355 4930566F21Rik - - 5|5 RIKEN cDNA 4930566F21 gene protein-coding 14816 Mm.391904 NM_016976 ENSMUSG00000019828 Grm1 4930455H15Rik|Gm10828|Gprc1a|mGluR1|nmf373|rcw|wobl - 10|10 A1 glutamate receptor, metabotropic 1 protein-coding 75300 4930548F15Rik - - 13|13 A3.2 RIKEN cDNA 4930548F15 gene protein-coding 242253 Mm.235040 NM_172864 ENSMUSG00000043020 Wdr63 4931433A13Rik|IC140|Ida7 - 3|3 H2 WD repeat domain 63 protein-coding 75432 Mm.443277 NR_045621 ENSMUSG00000100274 1700006F04Rik - - 14|14 E4 RIKEN cDNA 1700006F04 gene ncRNA 105243203 XR_870487 Gm39188 - - 8 B3.3|8 predicted gene, 39188 ncRNA 72832 Mm.313558 NM_145123 ENSMUSG00000042401 Crtac1 2810454P21Rik|AW047536|Crtac1B|Lotus - 19|19 C3 cartilage acidic protein 1 protein-coding 384622 Gm5331 EG384622 - 7|7 B3 predicted gene 5331 pseudo 381785 Mm.333146 NM_001033462 ENSMUSG00000073018 Gm1070 - - 6|6 C1 predicted gene 1070 protein-coding 106506 AA673181 - - - expressed sequence AA673181 unknown 93852 D8Jor1 - - - DNA segment, Chr 8, Barbara Jordan 1 unknown 93806 Mm.202781 NM_011455 ENSMUSG00000057726 Serpinb9g 1600002F03Rik|AW545779|NK21B - 13 A3.3|13 13.9 cM serine (or cysteine) peptidase inhibitor, clade B, member 9g protein-coding 100042204 Gm3720 - - 18|18 C ribosomal protein L7a pseudogene pseudo 625868 Gm6631 EG625868 - 3|3 E2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 258907 Mm.377744 NM_146905 ENSMUSG00000052625 Olfr851 MOR155-1 - 9|9 A2 olfactory receptor 851 protein-coding 232408 Mm.259262 NM_153094 ENSMUSG00000030154 Klrb1f A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f - 6|6 F3 killer cell lectin-like receptor subfamily B member 1F protein-coding 268739 Mm.9239 NM_198249 ENSMUSG00000004562 Arhgef40 E130112L23Rik|Gm669|Solo - 14|14 C2 Rho guanine nucleotide exchange factor (GEF) 40 protein-coding 492949 Alcrsp2 - - 2 70.76 cM alcohol response 2 unknown 225724 Mm.254517 NM_172632 ENSMUSG00000024558 Mapk4 A330097D03Rik|Erk3|Prkm4|p63Mapk - 18|18 E2 mitogen-activated protein kinase 4 protein-coding 76582 Mm.132208 NM_029665 ENSMUSG00000042590 Ipo11 1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11 - 13|13 D2.1 importin 11 protein-coding 105246432 XR_877400 Gm41722 - - 18 D1|18 predicted gene, 41722 ncRNA 15465 Mm.333327 NM_008285 ENSMUSG00000053004 Hrh1 Bphs|H1R|HH1R|Hir - 6 E3|6 53.05 cM histamine receptor H1 protein-coding 29812 Mm.279256 NM_013865 ENSMUSG00000027634 Ndrg3 4833415O14Rik|AI747193|Ndr3 - 2|2 H1 N-myc downstream regulated gene 3 protein-coding 108907 Mm.290015 NM_133851 ENSMUSG00000027306 Nusap1 2610201A12Rik|AI481307|ANKT|AW547774|BB165529|BM037|LNP|NuSAP|Q0310|SAPL - 2|2 E5 nucleolar and spindle associated protein 1 protein-coding 18588 Mm.39200 NM_012065 ENSMUSG00000025386 Pde6g Pdeg|p3AT - 11 E2|11 84.14 cM phosphodiesterase 6G, cGMP-specific, rod, gamma protein-coding 77189 Mm.441826 XR_865831 A430105J06Rik - - 1|1 H5 RIKEN cDNA A430105J06 gene ncRNA 109824 Tlf - - 9 52.24 cM T lymphocyte fraction unknown 102635907 Gm28900 - - 1|1 predicted gene 28900 ncRNA 77656 Mm.438544 C430045I18Rik C78534 - - RIKEN cDNA C430045I18 gene protein-coding 102641055 LOC102641055 - - - 60S ribosomal protein L29 protein-coding 668749 Gm9332 EG668749 - 3 G1|3 ribosomal protein L7A pseudogene pseudo 69288 Mm.26659 NM_001081347 ENSMUSG00000019944 Rhobtb1 1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930 - 10|10 B5.3 Rho-related BTB domain containing 1 protein-coding 105246025 XR_875601 Gm41387 - - 15 E3|15 predicted gene, 41387 ncRNA 97237 C79279 - - - expressed sequence C79279 unknown 258799 Mm.390171 NM_146803 ENSMUSG00000039962 Olfr906 MOR167-2 - 9|9 A5.1 olfactory receptor 906 protein-coding 100312473 Mm.480296 NM_001167536 ENSMUSG00000070816 Vmn1r86 Gm10301 - 7 A1|7 vomeronasal 1 receptor 86 protein-coding 102640581 XR_383345 Gm36611 - - 14 B|14 predicted gene, 36611 ncRNA 109372 Bw3 - - - body weight QTL 3 unknown 329244 Mm.131480 NM_001009940 ENSMUSG00000016524 Il19 - - 1|1 E4 interleukin 19 protein-coding 62838 D12Mit230 - - 12 43.8 cM DNA segment, Chr 12, Massachusetts Institute of Technology 230 unknown 102639902 Gm36103 - - 5|5 predicted gene, 36103 protein-coding 620156 Gm13409 - - 2|2 A3 interleukin 1 family, member 8 pseudogene pseudo 108168276 XR_001781880 Gm46543 - - 16 C4|16 predicted gene, 46543 ncRNA 61508 D8Mit113 - - 8 56.16 cM DNA segment, Chr 8, Massachusetts Institute of Technology 113 unknown 212167 Mm.121705 NM_175437 ENSMUSG00000039934 Gsap A530088I07Rik|Pion - 5|5 A3 gamma-secretase activating protein protein-coding 102638613 XR_387095 Gm35136 - - X F3|X predicted gene, 35136 ncRNA 100040353 Mm.382116 NM_025981 2810416G20Rik - - 3|3 A3 RIKEN cDNA 2810416G20 gene protein-coding 102540 Mm.441524 AI480624 - - - expressed sequence AI480624 protein-coding 64292 Mm.28768 NM_022415 ENSMUSG00000050737 Ptges 2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1 - 2 B|2 21.75 cM prostaglandin E synthase protein-coding 71648 Mm.116942 NM_181848 ENSMUSG00000026672 Optn 4930441O07Rik|FIP2|HYPL|NRP - 2 A1|2 3.15 cM optineurin protein-coding 67289 Mm.418299 NR_030776 3110021A11Rik - - 6|6 F1 RIKEN cDNA 3110021A11 gene ncRNA 102636343 XR_374558 Gm33436 - - 2 C1.2|2 predicted gene, 33436 ncRNA 654804 Mm.389841 NM_001039540 ENSMUSG00000053714 4732471J01Rik - - 7|7 A3 RIKEN cDNA 4732471J01 gene ncRNA 109431 Sprol1 Sporl1 - - spontaneous proliferation 1 unknown 102632364 XR_380927 Gm30456 - - 10 D3|10 predicted gene, 30456 ncRNA 53159 106I22-Sp6 - - - DNA segment, 106I22-Sp6 unknown 102634194 Mm.387024 NR_151613 ENSMUSG00000100711 Gm29461 - - 1 D|1 predicted gene 29461 ncRNA 78162 4930435C17Rik - - 7|7 RIKEN cDNA 4930435C17 gene protein-coding 102465216 NR_105829 ENSMUSG00000099289 Mir6403 Gm27992|mmu-mir-6403 - 4|4 D3 microRNA 6403 ncRNA 104327 Mp - - - micropinna microphthalmia unknown 73225 Mm.247535 NM_133750 ENSMUSG00000022434 Fam118a - - 15|15 E2 family with sequence similarity 118, member A protein-coding 108511968 Zfpm1r18 - - 8 E1 Zfpm1R18 erythroid cis-regulatory module biological-region 381538 Mm.318201 NM_001126487 ENSMUSG00000047502 Mroh7 Gm1027|Heatr8 - 4|4 C7 maestro heat-like repeat family member 7 protein-coding 62928 D10Mit265 - - 10 46.87 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 265 unknown 100049552 Mm.306903 Gm10199 - - 19|19 predicted gene 10199 unknown 61944 D6Mit322 - - 6 36.3 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 322 unknown 105245235 Gm40718 - - 10|10 predicted gene, 40718 ncRNA 73510 Mm.451988 1700082O11Rik - - 15|15 RIKEN cDNA 1700082O11 gene protein-coding 12270 Mm.380517 NR_028304 C4bp-ps1 C4bpb - 1 E4|1 56.89 cM complement component 4 binding protein, pseudogene 1 pseudo 100034932 Ethm1 - - - ethanol induced thermoregulation 1 unknown 105243288 XR_879195 Gm39251 - - 8 E1|8 predicted gene, 39251 ncRNA 320632 Mm.215860 NM_177214 ENSMUSG00000003660 Snrnp200 A330064G03Rik|Ascc3l1|BC011390|HELIC2|U5-200-KD|U5-200KD - 2 F1|2 61.84 cM small nuclear ribonucleoprotein 200 (U5) protein-coding 102639406 XR_382032 Gm35730 - - 13 A1|13 predicted gene, 35730 ncRNA 320407 Mm.123265 NM_177155 ENSMUSG00000043932 Klri2 A530090P03Rik - 6|6 F3 killer cell lectin-like receptor family I member 2 protein-coding 20402 Mm.485295 NM_011743 ENSMUSG00000027288 Zfp106 Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106 - 2 E5|2 60.37 cM zinc finger protein 106 protein-coding 108168769 XR_001783335 Gm46748 - - 2 C3|2 predicted gene, 46748 ncRNA 78233 Mm.443851 6330522J23Rik - - 12|12 RIKEN cDNA 6330522J23 gene protein-coding 101261 Mm.12079 AU024342 - - - expressed sequence AU024342 protein-coding 97687 C76628 - - - expressed sequence C76628 protein-coding 105246079 Gm41426 - - 16|16 predicted gene, 41426 ncRNA 63857 Mm.174133 NM_021486 ENSMUSG00000031845 Bco1 Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX - 8|8 E1 beta-carotene oxygenase 1 protein-coding 100036211 Spir1 - - 7 15.94 cM Streptococcus pneumoniae infection resistance 1 unknown 258862 Mm.391449 NM_146863 ENSMUSG00000047868 Olfr770 MOR114-5 - 10|10 D3 olfactory receptor 770 protein-coding 77041 Mm.196399 NM_029847 ENSMUSG00000021592 Arsk 2810429K17Rik|4833414G15Rik - 13|13 C1 arylsulfatase K protein-coding 103495 AW742733 - - - expressed sequence AW742733 unknown 208164 Mm.257766 NM_173375 ENSMUSG00000047420 Fam180a B230314O19 - 6|6 B1 family with sequence similarity 180, member A protein-coding 15950 Mm.463437 NM_008328 ENSMUSG00000039997 Ifi203 Ifi203a|Ifi203b|Mndal - 1 H3|1 80.76 cM interferon activated gene 203 protein-coding 723951 NR_029538 ENSMUSG00000065454 Mir124a-3 Mirn124a-3|mir-124-3|mir-124a-3 - 2 H4|2 microRNA 124a-3 ncRNA 108096 Mm.206599 NM_130861 ENSMUSG00000063975 Slco1a5 Oatp-3|Oatp3|Slc21a7 - 6|6 G2 solute carrier organic anion transporter family, member 1a5 protein-coding 61227 D1Mit232 - - 1 18.85 cM DNA segment, Chr 1, Massachusetts Institute of Technology 232 unknown 105246399 XR_877305 Gm41691 - - 18 B2|18 predicted gene, 41691 ncRNA 105245593 XR_873816 Gm41025 - - 13 D1|13 predicted gene, 41025 ncRNA 105244755 XR_868437 LOC105244755 - - 5 C3.1 uncharacterized LOC105244755 ncRNA 493018 Splq1 - - - spleen weight QTL 1 unknown 216443 Mm.28173 NM_001003913 ENSMUSG00000040354 Mars Metrs|Mtrns - 10|10 D3 methionine-tRNA synthetase protein-coding 111709 Mpmv19 Mpmv-19 - - modified polytropic murine leukemia virus 19 other 73061 Mm.292979 NM_028426 ENSMUSG00000079450 Cldn34c1 3110007F17Rik - X|X E3 claudin 34C1 protein-coding 75116 Mm.72675 NR_040383 ENSMUSG00000074039 4930520O04Rik - - 9|9 F3 RIKEN cDNA 4930520O04 gene ncRNA 668513 Tpt1-ps7 Gm9215 - 17|17 C tumor protein, translationally-controlled, pseudogene 7 pseudo 100416685 Gm18192 - - 7|7 A1 zinc finger protein 772 pseudogene pseudo 628737 XR_001778039 Gm6909 EG628737 - 7|7 A1 predicted gene 6909 unknown 69089 Mm.182340 NM_026936 ENSMUSG00000000959 Oxa1l 1810020M02Rik|AI894287 - 14|14 C2 oxidase assembly 1-like protein-coding 66648 Mm.263189 NM_001004361 ENSMUSG00000024269 Tpgs2 5730437P09Rik|5730494M16Rik|AI666318|Pgs2 - 18|18 A2 tubulin polyglutamylase complex subunit 2 protein-coding 105244229 XR_866530 Gm39876 - - 2 E1|2 predicted gene, 39876 ncRNA 11975 Mm.340818 NM_016920 ENSMUSG00000019302 Atp6v0a1 AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1 - 11 D|11 64.04 cM ATPase, H+ transporting, lysosomal V0 subunit A1 protein-coding 435791 Mm.473673 NM_001085528 ENSMUSG00000094618 Gm13271 Ifnz - 4|4 C4 predicted gene 13271 protein-coding 102632724 Gm30720 - - 11|11 predicted gene, 30720 ncRNA 547247 Gm6028 EG547247 - 1|1 E2.1 ribosomal protein L9 pseudogene pseudo 258371 Mm.223061 NM_146374 ENSMUSG00000049018 Olfr368 MOR178-1 - 2|2 B olfactory receptor 368 protein-coding 102639185 Mm.212755 XR_877795 Gm35554 - - 19 C1|19 predicted gene, 35554 ncRNA 21301 T(X;2)14Rl T14Rl - - reciprocal translocation, Chr X and 2, Russell 14 other 666819 Mm.421424 Gm8307 EG666819 - 1 C1.1|1 ubiquitin specific peptidase 10 pseudogene pseudo 606730 Gm6082 EG606730|Ppia-ps9_818.1 - 9|9 B peptidylprolyl isomerase A (Ppia) pseudogene 9_818.1 pseudo 269152 Mm.129727 NM_177724 ENSMUSG00000026494 Kif26b 4832420M10|BC056349|D230039L06Rik - 1 H4|1 83.16 cM kinesin family member 26B protein-coding 100417607 Gm18712 - - 14|14 E4 ring finger and WD repeat domain 2 pseudogene pseudo 383849 Gm5274 EG383849 - 3|3 C glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 277345 Mm.247244 NM_001012723 ENSMUSG00000070530 Wfdc16 BC043944|WAP16 - 2|2 H3 WAP four-disulfide core domain 16 protein-coding 258927 Mm.358934 NM_146925 ENSMUSG00000054236 Olfr481 MOR204-2|MOR204-39 - 7|7 E3 olfactory receptor 481 protein-coding 108639 BY367451 Atxn8os|Klhl1as|Sca8 - 14|14 cDNA sequence, BY367451 ncRNA 102637941 Mm.366358 NR_151607 Gm12602 - - 4 C4|4 42.14 cM predicted gene 12602 ncRNA 102641901 XR_868799 Gm38583 - - 6 A1|6 predicted gene, 38583 ncRNA 102633856 Mm.409479 XR_875973 Gm31583 - - 16 B1|16 predicted gene, 31583 ncRNA 71675 Mm.48031 NM_027860 ENSMUSG00000042208 0610010F05Rik Kiaa1841|mKIAA1841 - 11|11 A3.2 RIKEN cDNA 0610010F05 gene protein-coding 108303 Mmv9 Mmv-9 - - MCF endogenous virus 9 other 73303 Mm.443297 NR_040610 ENSMUSG00000086999 Bcas1os2 1700040N02Rik - 2|2 H3 breast carcinoma amplified sequence 1, opposite strand 2 ncRNA 72515 Mm.257762 NM_175639 ENSMUSG00000041057 Wdr43 2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007 - 17|17 E1.3 WD repeat domain 43 protein-coding 105243078 Gm39107 - - 7|7 predicted gene, 39107 ncRNA 102636206 Gm28951 - - Y|Y predicted gene 28951 ncRNA 102631856 XM_006519765 ENSMUSG00000115726 Gm30083 - - 14 B|14 predicted gene, 30083 protein-coding 110610 Kth1 Kth-1 - - kidney 30-40 thousand Mol. Wt. protein 1 protein-coding 105244514 XR_867505 Gm40108 - - 3 F2.2|3 predicted gene, 40108 ncRNA 100126462 Trav4-2 Gm13953 - 14|14 C2 T cell receptor alpha variable 4-2 other 668388 Gm9144 EG668388 - 12 A1.1|12 nuclear transcription factor-Y gamma pseudogene pseudo 100418432 Gm19210 - - 3|3 F2.2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5 pseudogene pseudo 70123 Mm.146408 NM_027327 ENSMUSG00000086316 Nbdy 2210013O21Rik|AI181827|Thp5 - X|X F3 negative regulator of P-body association protein-coding 100042786 Mm.262931 NM_001166062 ENSMUSG00000113489 Gm16381 EG435336 - 12|12 D2 predicted gene 16381 protein-coding 71340 Mm.297130 NM_024242 ENSMUSG00000021428 Riok1 3110046C13Rik|5430416A05Rik|Ad034 - 13|13 A3.3 RIO kinase 1 protein-coding 667670 Igkv4-65 EG667670|Gm8753|ki4 - 6|6 C1 immunoglobulin kappa chain variable 4-65 pseudo 56330 Mm.371609 NM_019746 ENSMUSG00000030417 Pdcd5 2200003D22Rik|AA408513|Tfar19 - 7|7 B2 programmed cell death 5 protein-coding 238384 Mm.312448 NM_172152 ENSMUSG00000041771 Slc24a4 A930002M03Rik|AW492432|NCKX4 - 12|12 E solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 protein-coding 14859 Mm.394593 NM_010356 ENSMUSG00000025934 Gsta3 Gst2-3 - 1 A4|1 6.5 cM glutathione S-transferase, alpha 3 protein-coding 229007 Mm.87720 NM_144894 ENSMUSG00000027582 Zgpat 1500006I01Rik|BC021513 - 2|2 H4 zinc finger, CCCH-type with G patch domain protein-coding 100316770 NR_035416 ENSMUSG00000095340 Mir669j Mirn669j|mmu-mir-669j - 2 A1|2 8.22 cM microRNA 669j ncRNA 28096 DYzEms4 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 4 unknown 15486 Mm.276466 NM_008290 ENSMUSG00000031844 Hsd17b2 AI194836|AI194967|AI255511 - 8|8 E1 hydroxysteroid (17-beta) dehydrogenase 2 protein-coding 224247 Mm.26145 NM_175011 ENSMUSG00000055789 E330017A01Rik - - 16|16 C1.2 RIKEN cDNA E330017A01 gene protein-coding 100503344 Gm19645 - - 17|17 18.7 cM predicted gene, 19645 ncRNA 22325 Mm.179011 NM_009500 ENSMUSG00000009621 Vav2 2810040F13Rik|AI847175|Vav-2 - 2 A3|2 19.36 cM vav 2 oncogene protein-coding 102631824 XR_384859 Gm30064 - - 16 B4|16 predicted gene, 30064 ncRNA 217143 Mm.32622 NM_175453 ENSMUSG00000070337 Gpr179 5330439C02Rik|Gpr158l1 - 11|11 D G protein-coupled receptor 179 protein-coding 21098 T(16;17)43H T43H - - reciprocal translocation, Chr 16 and 17, Harwell 43 other 100329140 Mm.159490 Mettl5os 4930550G17Rik - 2 C2|2 40.95 cM methyltransferase like 5, opposite strand unknown 16427 Mm.34819 NM_018746 ENSMUSG00000021922 Itih4 ITI-HC4|Itih-4|PK-120 - 14 B|14 19.09 cM inter alpha-trypsin inhibitor, heavy chain 4 protein-coding 672161 Gm9550 - - 14|14 C1 predicted gene 9550 pseudo 102639586 XR_375344 Gm35864 - - 2 H3|2 predicted gene, 35864 ncRNA 98797 AA511284 - - - expressed sequence AA511284 unknown 105243556 XR_880289 Gm39445 - - 11 E1|11 predicted gene, 39445 ncRNA 230075 Mm.1103 NM_001033305 ENSMUSG00000071014 Ndufb6 CI-B17|Gm137 - 4|4 A5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 protein-coding 105243978 XR_872364 Gm39677 - - 11 A4|11 predicted gene, 39677 ncRNA 105244765 Gm40317 - - 5|5 predicted gene, 40317 protein-coding 214804 Mm.268854 NM_001166064 ENSMUSG00000036863 Syde2 C430017H16Rik - 3|3 H2 synapse defective 1, Rho GTPase, homolog 2 (C. elegans) protein-coding 106804092 LOC106804092 - - 13 A3.2 nonconserved acetylation island sequence M71 enhancer biological-region 108168173 XR_001781354 Gm46464 - - 14 A1|14 predicted gene, 46464 ncRNA 67845 Mm.386792 NM_026406 ENSMUSG00000028098 Rnf115 2610028E05Rik|AU042696|Zfp364 - 3|3 F2.1 ring finger protein 115 protein-coding 230721 Mm.277091 NM_130881 ENSMUSG00000011257 Pabpc4 - - 4|4 D2.2 poly(A) binding protein, cytoplasmic 4 protein-coding 258871 Mm.377729 NM_146871 ENSMUSG00000094588 Olfr898 MOR170-3 - 9|9 A5.1 olfactory receptor 898 protein-coding 111212 Tpi-rs6 Tpi-6 - - triosephosphate isomerase related sequence 6 pseudo 245376 NM_001081666 Gm4985 EG245376 - X|X A2 testis derived transcript pseudogene pseudo 116884 Pgia9 - - 15 53.99 cM proteoglycan induced arthritis 9 unknown 14422 Mm.340702 NM_008081 ENSMUSG00000013418 B4galnt2 AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1 - 11 D|11 59.02 cM beta-1,4-N-acetyl-galactosaminyl transferase 2 protein-coding 26908 Mm.250909 NM_012011 ENSMUSG00000069049 Eif2s3y Eif-2gy|Spy|Tfy - Y|Y A1 eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked protein-coding 74648 Mm.172064 NM_029036 ENSMUSG00000040928 S100pbp 4930429A08Rik|AI851343|S100pbpr - 4|4 D2.2 S100P binding protein protein-coding 59007 Mm.258381 NM_021504 ENSMUSG00000021785 Ngly1 1110002C09Rik|PNGase|Png1 - 14 A2|14 7.08 cM N-glycanase 1 protein-coding 100503886 Gm19943 - - 7|7 10.27 cM predicted gene, 19943 pseudo 319461 D230040N21Rik Part1 - 13|13 RIKEN cDNA D230040N21 gene unknown 56541 Mm.40989 NM_019986 ENSMUSG00000021476 Habp4 4933413D03Rik|4933428J01Rik - 13 B3|13 33.26 cM hyaluronic acid binding protein 4 protein-coding 100035975 Ccmp5 - - 7 63.44 cM cerebellar cAMP 5 unknown 666945 Mm.391806 NR_027829 Gm10638 - - 8 C3|8 predicted gene 10638 ncRNA 666959 Gm8381 EG666959 - 8|8 A4 ribosomal protein S2 pseudogene pseudo 12954 Mm.1228 NM_013501 ENSMUSG00000024041 Cryaa Acry-1|Crya-1|Crya1|DAcry-1|lop18 - 17 B1|17 17.09 cM crystallin, alpha A protein-coding 20897 Mm.10801 NM_009291 ENSMUSG00000032327 Stra6 AI891933 - 9|9 B stimulated by retinoic acid gene 6 protein-coding 100040139 Gm2622 - - 3|3 D predicted gene 2622 pseudo 107375 Mm.5323 NM_134154 ENSMUSG00000024818 Slc25a45 AW491445 - 19|19 A solute carrier family 25, member 45 protein-coding 14608 Mm.4672 NM_010287 ENSMUSG00000031932 Gpr83 AW045253|Gir|Gpr72|RP105|RP39|RP82 - 9 A2|9 4.4 cM G protein-coupled receptor 83 protein-coding 102637401 Gm29285 - - Y|Y predicted gene 29285 protein-coding 116822 Angle3 Angle-3 - 18 22.08 cM angle of entrainment 3 unknown 321013 Mm.358606 4930442P19Rik - - 5|5 RIKEN cDNA 4930442P19 gene protein-coding 194064 LOC194064 - - 2|2 plasmin inhibitor alpha 2 protein-coding 80838 Mm.480242 NM_030609 ENSMUSG00000049539 Hist1h1a H1.1|H1a|H1f1|H1var3 - 13|13 A3.1 histone cluster 1, H1a protein-coding 100416825 Gm18282 - - 15|15 D3 predicted gene, 18282 pseudo 100503839 Gm12481 - - 4 A5|4 23.05 cM small EDRK-rich factor 2 pseudogene pseudo 27489 D0Kist6 CAG-14 - - DNA segment, KIST 6 unknown 52103 D11Ggc1e - - - DNA segment, Chr 11, G. Consalez 1, expressed unknown 12125 Mm.141083 NM_009754 ENSMUSG00000027381 Bcl2l11 1500006F24Rik|Bim|Bod|bcl2-L-11 - 2|2 F1 BCL2-like 11 (apoptosis facilitator) protein-coding 16580 Mm.491138 NM_016761 ENSMUSG00000024301 Kifc5b Hset|KNSL2|Kifc5a - 17|17 A3.3 kinesin family member C5B protein-coding 105247191 XR_881512 ENSMUSG00000086845 Gm13010 - - 4 D3|4 69.91 cM predicted gene 13010 ncRNA 108168245 XR_001781709 Gm46520 - - 15 E1|15 predicted gene, 46520 ncRNA 102632607 Gm30637 - - 16|16 predicted gene, 30637 ncRNA 61808 D2Mit381 - - - DNA segment, Chr 2, Massachusetts Institute of Technology 381 unknown 229791 Mm.140138 NM_177664 ENSMUSG00000044667 Plppr4 A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455 - 3 G1|3 50.57 cM phospholipid phosphatase related 4 protein-coding 110375 Tpm3-rs5 - - - tropomyosin 3, related sequence 5 protein-coding 100503017 Gm11628 - - 11|11 66.33 cM cytochrome b-c1 complex subunit 10-like pseudo 70737 Mm.87634 NM_001037711 ENSMUSG00000068876 Cgn 6330408J11Rik - 3 F2.1|3 40.74 cM cingulin protein-coding 100504714 Mm.381744 NR_040376 ENSMUSG00000097357 Gm16793 - - 8 A4|8 21.16 cM predicted gene, 16793 ncRNA 668814 Mm.425909 NM_001101609 ENSMUSG00000092109 Gm9376 EG668814 - 14|14 E4 predicted gene 9376 protein-coding 13353 Mm.27155 NM_010047 ENSMUSG00000003531 Dgcr6 - - 16 A3|16 11.19 cM DiGeorge syndrome critical region gene 6 protein-coding 108167994 Gm46344 - - 12 A2|12 40S ribosomal protein SA pseudogene pseudo 105244525 Gm40119 - - 3|3 predicted gene, 40119 ncRNA 105245472 XR_873262 Gm40921 - - 13 A3.3|13 predicted gene, 40921 ncRNA 102639884 XR_375205 Gm36090 - - 2 H3|2 predicted gene, 36090 ncRNA 105243411 XR_870774 Gm39341 - - 9 A5.3|9 predicted gene, 39341 ncRNA 666444 Gm8109 EG666444 - 3 C|3 ribosomal protein L7A pseudogene pseudo 100463514 Gm20595 Cct8-2p - 3 B|3 17.41 cM chaperonin containing Tcp1, subunit 8 (theta) pseudogene pseudo 24055 Mm.5012 NM_011893 ENSMUSG00000054520 Sh3bp2 3BP2 - 5|5 B2 SH3-domain binding protein 2 protein-coding 13117 Mm.10742 NM_010011 ENSMUSG00000066072 Cyp4a10 AI647584|Cyp4a|D4Rp1|Msp-3|RP1 - 4 D1|4 53.05 cM cytochrome P450, family 4, subfamily a, polypeptide 10 protein-coding 63002 D12Mit285 - - 12 23.46 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 285 unknown 105243691 XR_001782786 Gm39519 - - X A7.3|X predicted gene, 39519 ncRNA 61951 D6Mit330 - - 6 54.79 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 330 unknown 17057 Mm.16729 NM_010737 ENSMUSG00000030361 Klrb1a Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A - 6 F3|6 63.06 cM killer cell lectin-like receptor subfamily B member 1A protein-coding 77521 Mm.244177 NM_029920 ENSMUSG00000029651 Mtus2 5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774 - 5|5 G3 microtubule associated tumor suppressor candidate 2 protein-coding 100534313 Gm21026 - - 10|10 C1 predicted gene, 21026 pseudo 105244510 XR_867492 Gm40104 - - 3 F2.2|3 predicted gene, 40104 ncRNA 108168354 XR_001782235 Gm46604 - - 17 A1|17 predicted gene, 46604 ncRNA 627324 Trav9-1 Gm13947 - 14|14 C2 T cell receptor alpha variable 9-1 other 102635002 XR_392607 ENSMUSG00000099399 Gm28301 - - Y E|Y predicted gene 28301 ncRNA 102640219 Gm36339 - - 19 D2|19 predicted gene, 36339 pseudo 258161 Olfr489-ps1 MOR204-26P - 7|7 E3 olfactory receptor 489, pseudogene 1 pseudo 61541 D9Mit120 - - 9 71.13 cM DNA segment, Chr 9, Massachusetts Institute of Technology 120 unknown 105246175 XR_876300 Gm41509 - - 16 C4|16 predicted gene, 41509 ncRNA 100417279 Gm18498 - - X|X F3 tubulin tyrosine ligase-like 1 pseudogene pseudo 328986 NM_177830 A430085C19 - - 18|18 E2 uncharacterized protein A430085C19 protein-coding 110120515 LOC110120515 - - - VISTA enhancer mm1299 biological-region 100041817 Gm3526 100041447|Gm3344 - 14 A1|14 predicted gene 3526 pseudo 319482 Mm.483194 NM_176924 ENSMUSG00000078776 9530053A07Rik FCGBP - 7|7 A3 RIKEN cDNA 9530053A07 gene protein-coding 665186 Mm.318615 NM_001080712 ENSMUSG00000073747 Gm7534 EG665186 - 4|4 D3 predicted gene 7534 protein-coding 622973 Gm6376 EG622973 - 7|7 F4 predicted gene 6376 pseudo 102637965 XR_384199 Gm34646 - - 15 D3|15 predicted gene, 34646 ncRNA 100039596 Mm.412928 NM_001285425 ENSMUSG00000099032 Tcf24 Gm10567|Gm2330 - 1 A2|1 transcription factor 24 protein-coding 100415913 Mm.474010 Gm14123 - - - predicted gene 14123 unknown 320779 Mm.447180 D230002P11Rik - - 16|16 RIKEN cDNA D230002P11 gene protein-coding 12406 Mm.22708 NM_009825 ENSMUSG00000070436 Serpinh1 BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46 - 7|7 E1 serine (or cysteine) peptidase inhibitor, clade H, member 1 protein-coding 100416577 Gm18160 - - 9|9 A1 olfactory receptor 992 pseudogene pseudo 102634123 XR_378835 Gm31784 - - 8 A2|8 predicted gene, 31784 ncRNA 100417339 Gm18542 - - 9|9 F1 predicted gene, 18542 pseudo 259141 Olfr1544-ps1 MOR281-2P - 10|10 D3 olfactory receptor 1544, pseudogene 1 pseudo 108168313 XM_017317733 LOC108168313 - - 17 A1 uncharacterized LOC108168313 protein-coding 100504201 Gm20109 - - 17|17 14.73 cM predicted gene, 20109 ncRNA 667250 Mm.449778 NM_001081019 Gm12657 H3mm12 - 4|4 C5 predicted gene 12657 protein-coding 360061 D17Jcs34 - - - DNA segment, Chr 17, John C. Schimenti 34 unknown 62851 D12Mit196 - - 12 61.33 cM DNA segment, Chr 12, Massachusetts Institute of Technology 196 unknown 108167953 Gm46311 - - 12 A1.1|12 40S ribosomal protein S28 pseudogene pseudo 50723 Mm.17819 NM_015790 ENSMUSG00000000732 Icosl AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653 - 10|10 C1 icos ligand protein-coding 100327266 Mm.491252 9430064I24Rik - - 7 F3|7 RIKEN cDNA 9430064I24 gene unknown 106042 Mm.150314 NM_001033217 ENSMUSG00000036158 Prickle1 1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1 - 15|15 E3 prickle planar cell polarity protein 1 protein-coding 100043832 Gm14122 - - 2|2 G3 predicted gene 14122 pseudo 13401 Mm.2852 NM_010058 ENSMUSG00000030410 Dmwd DMR-N9|Dm9 - 7 A3|7 9.46 cM dystrophia myotonica-containing WD repeat motif protein-coding 100043282 Mm.213248 Trav3n-3 Gm10901 - 14|14 C2 T cell receptor alpha variable 3N-3 other 320756 NM_177254 9330155M09Rik - - 16|16 C2 RIKEN cDNA 9330155M09 gene ncRNA 15466 Mm.57243 NM_008286 ENSMUSG00000034987 Hrh2 H2R|HH2R - 13 B1|13 28.4 cM histamine receptor H2 protein-coding 547323 Mm.213262 NM_001042554 LOC547323 - - 14|14 uncharacterized LOC547323 other 61282 D2Mit259 - - 2 70.8 cM DNA segment, Chr 2, Massachusetts Institute of Technology 259 unknown 667555 Gm11581 - - 1|1 C2 mortality factor 4 like 2 pseudogene pseudo 56506 Mm.42192 NM_019686 ENSMUSG00000037493 Cib2 2810434I23Rik|AI449053 - 9|9 A5.3 calcium and integrin binding family member 2 protein-coding 228607 Mm.287226 NM_144888 ENSMUSG00000037523 Mavs D430028G21Rik|IPS-1|Visa|cardif - 2|2 F1 mitochondrial antiviral signaling protein protein-coding 493070 Lgth3 - - 4 34.92 cM body length 3 unknown 625123 XM_889664 Gm6557 - - 16 B1|16 predicted gene 6557 protein-coding 100417765 Gm17048 - - 14|14 A1 esterase D/formylglutathione hydrolase pseudogene pseudo 105244710 XR_872473 Gm40268 - - 12 A1.1|12 predicted gene, 40268 ncRNA 108167579 XR_001778747 Gm46067 - - 8 A2|8 predicted gene, 46067 ncRNA 14534 Mm.218837 NM_020004 ENSMUSG00000020918 Kat2a 1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5 - 11 D|11 63.53 cM K(lysine) acetyltransferase 2A protein-coding 110222 Igh-Aa3 - - - immunoglobulin heavy chain Aa3 other 52263 D1Ertd475e - - 1 69.03 cM DNA segment, Chr 1, ERATO Doi 475, expressed unknown 791371 Mm.149403 Gm9910 - - - predicted gene 9910 protein-coding 13219 Mm.423258 NM_007845 Defa-rs10 CRS4C-4|Defcr-rs10 - 8|8 defensin, alpha, related sequence 10 protein-coding 109643 Ym - - - yellow mottled unknown 114911 Cosz2 Scis2 - 14 20.88 cM cocaine seizure 2 unknown 19523 Rb(3.15)2Rk Rb2Rk - - Robertsonian translocation, Chr 3 and 15, Roderick 2 other 106248 Mm.275354 NM_029128 ENSMUSG00000022704 Qtrt2 3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1 - 16|16 B4 queuine tRNA-ribosyltransferase accessory subunit 2 protein-coding 102638712 Mm.417669 NR_155868 Gm35206 - - 10 D1|10 predicted gene, 35206 ncRNA 102635067 XR_874543 LOC102635067 - - 14 B uncharacterized LOC102635067 ncRNA 102632800 XR_376964 Gm30778 - - 5 C1|5 predicted gene, 30778 ncRNA 20129 Mm.1417 NM_009100 ENSMUSG00000041984 Rptn - - 3|3 F2.1 repetin protein-coding 791406 Mm.134105 Gm9979 - - 13 A3-A5|13 predicted gene 9979 protein-coding 330146 Mm.252724 XR_880514 4930458A03Rik Gm42914|Gm835 - 5|5 E5 RIKEN cDNA 4930458A03 gene unknown 13804 Mm.474473 NM_007931 ENSMUSG00000015337 Endog - - 2|2 B endonuclease G protein-coding 102637174 Gm29178 - - Y|Y predicted gene 29178 ncRNA 105246726 Gm41968 - - 1|1 predicted gene, 41968 ncRNA 623198 Mm.489582 NM_001243104 ENSMUSG00000096344 Gm6408 - - 5 G3|5 predicted gene 6408 protein-coding 14916 Mm.278 NM_008191 ENSMUSG00000032978 Guca2b AV066530|Gcap2|Ugn - 4 D2.1|4 55.48 cM guanylate cyclase activator 2b (retina) protein-coding 791083 Gm9742 - - 13 A1|13 polo-like kinase 4 pseudogene pseudo 108169051 XR_001784885 LOC108169051 - - 5 C3.3 uncharacterized LOC108169051 ncRNA 102638922 Gm35366 - - 1|1 predicted gene, 35366 ncRNA 407821 Mm.216313 NM_001080924 ENSMUSG00000041961 Znrf3 Gm1167 - 11|11 A1 zinc and ring finger 3 protein-coding 102637182 XR_874469 Gm34059 - - 14 A3|14 predicted gene, 34059 ncRNA 77961 Mm.388336 XR_384320 A930027H12Rik - - 15|15 E3 RIKEN cDNA A930027H12 gene ncRNA 56607 D5Mgc1 - - - DNA segment, Chr 5, MRC UK Mouse Genome Centre 1 unknown 12038 Mm.250719 NM_009738 ENSMUSG00000027792 Bche C730038G20Rik - 3|3 E3 butyrylcholinesterase protein-coding 109526 Nidd2n Nidd2nsy - 14 31.49 cM non-insulin-dependent diabetes mellitus 2 in NSY unknown 69754 Mm.44236 NM_153195 ENSMUSG00000001786 Fbxo7 2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118 - 10|10 C1 F-box protein 7 protein-coding 670496 Mm.466614 NM_001100614 ENSMUSG00000078258 Gm11564 - - 11|11 D predicted gene 11564 protein-coding 320586 Mm.442230 NR_015491 A630089N07Rik - - 16|16 C4 RIKEN cDNA A630089N07 gene ncRNA 69547 Mm.77325 NM_027116 ENSMUSG00000060621 Nkpd1 2310015G09Rik - 7|7 A3 NTPase, KAP family P-loop domain containing 1 protein-coding 19335 Mm.86744 NM_008999 ENSMUSG00000004768 Rab23 AW545388|opb|opb2 - 1 B|1 12.8 cM RAB23, member RAS oncogene family protein-coding 27220 Mm.75498 NM_013732 ENSMUSG00000021647 Cartpt Cart - 13|13 D1 CART prepropeptide protein-coding 100035911 Lmrq2 - - - Leishmania major resistance QTL 2 unknown 74984 Mm.445897 4930478M13Rik - - 15|15 F1 RIKEN cDNA 4930478M13 gene protein-coding 105243390 XR_870689 Gm39325 - - 9 A5.1|9 predicted gene, 39325 ncRNA 68404 Mm.232930 NM_153529 ENSMUSG00000039114 Nrn1 0710008J23Rik|Cpg15|Nrn - 13|13 A3.3 neuritin 1 protein-coding 620499 XR_874402 Gm6158 - - 14 A3|14 predicted gene 6158 pseudo 69865 Mm.87538 NM_001081074 ENSMUSG00000052595 A1cf 1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer - 19|19 C1 APOBEC1 complementation factor protein-coding 232919 Mm.153893 NR_002857 ENSMUSG00000108558 Psg-ps1 AV036018|Cea-6|Cea6 - 7|7 A2 pregnancy specific glycoprotein, pseudogene 1 pseudo 216081 Gm4797 EG216081 - 10|10 B5.3 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene pseudo 102634727 XM_006530037 Gm29485 - - 1 E4|1 predicted gene 29485 protein-coding 100417538 Gm18673 - - 7|7 D1 inositol polyphosphate multikinase pseudogene pseudo 102631914 XR_376493 Gm30126 - - 4 C7|4 predicted gene, 30126 ncRNA 108372 Loh3 - - - loss of heterozygosity, region 3 other 102638657 Gm12625 - - 11 B2|11 37.81 cM predicted gene 12625 pseudo 105243485 XR_880224 Gm39393 - - 11 D|11 predicted gene, 39393 ncRNA 109622 Ccub1 Ccub - - curlicue b unknown 258446 Mm.271374 NM_146454 ENSMUSG00000075093 Olfr1231 MOR235-2 - 2|2 E1 olfactory receptor 1231 protein-coding 243833 Mm.293823 NM_153802 ENSMUSG00000060397 Zfp128 9630016P15Rik|Znf8|mZnf8 - 7|7 A1 zinc finger protein 128 protein-coding 62634 D14Mit124 - - 14 36.05 cM DNA segment, Chr 14, Massachusetts Institute of Technology 124 unknown 17836 Mm.1311 NM_008645 ENSMUSG00000059908 Mug1 - - 6|6 F1 murinoglobulin 1 protein-coding 258381 Mm.377469 NM_146383 ENSMUSG00000045514 Olfr460 MOR120-2 - 6|6 B1 olfactory receptor 460 protein-coding 66766 Mm.174834 NM_025753 ENSMUSG00000049692 Tmem239 4933425O20Rik - 2|2 F1 transmembrane 239 protein-coding 105245802 XR_874765 Gm37762 - - 14 D2|14 predicted gene, 37762 ncRNA 108168924 XR_001784222 LOC108168924 - - 4 A1 uncharacterized LOC108168924 ncRNA 102636137 Gm33291 - - 7|7 predicted gene, 33291 ncRNA 97052 C77055 - - - expressed sequence C77055 unknown 72290 Mm.249827 NM_028185 ENSMUSG00000044847 Lsm11 2210404M20Rik|AV079530 - 11|11 B1.1 U7 snRNP-specific Sm-like protein LSM11 protein-coding 621984 Gm6275 EG621984 - X|X F1 glycogen synthase kinase 3 alpha pseudogene pseudo 105246741 XR_878646 Gm41983 - - 2 H4|2 predicted gene, 41983 ncRNA 74071 Mm.441497 NM_028742 ENSMUSG00000054966 Lmntd1 4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1 - 6 G3|6 77.37 cM lamin tail domain containing 1 protein-coding 100216531 NR_028567 ENSMUSG00000077604 Snord1b - - 11 E2|11 small nucleolar RNA, C/D box 1B snoRNA 100040585 XM_006536339 Gm2854 - - X A3.1|X predicted gene 2854 protein-coding 22379 Mm.29043 NM_011711 ENSMUSG00000023008 Fmnl3 2700073B04Rik|FBP11|Wbp3|mKIAA2014 - 15|15 F1 formin-like 3 protein-coding 21033 T(10;11)Rl TRl - - reciprocal translocation, Chr 10 and 11, Russell other 100124674 Trbv12-2 Tcrb|Tcrb-V5.1 - 6 19.2 cM|6 B1 T cell receptor beta, variable 12-2 other 75185 Mm.159452 NM_029199 ENSMUSG00000025051 Samt4 4930542N07Rik - X|X F3 spermatogenesis associated multipass transmembrane protein 4 protein-coding 61573 DXMit178 - - X 72.38 cM DNA segment, Chr X, Massachusetts Institute of Technology 178 unknown 112333 Athsq2 - - - atherosclerosis susceptibility QTL 2 unknown 102634920 Gm29228 - - 1 B|1 predicted gene 29228 pseudo 52563 Mm.196638 NM_178347 ENSMUSG00000024370 Cdc23 6030435O18|D18Ertd243e - 18 B1|18 18.69 cM CDC23 cell division cycle 23 protein-coding 61533 D8Mit198 - - 8 53.04 cM DNA segment, Chr 8, Massachusetts Institute of Technology 198 unknown 97655 Mm.486617 C81600 - - - expressed sequence C81600 unknown 387183 NR_029574 ENSMUSG00000065398 Mir188 Mirn188|mir-188|mmu-mir-188 - X|X A1.1 microRNA 188 ncRNA 100035735 Lmr5 - - 10 73.57 cM leishmaniasis resistance 5 unknown 666474 Gm13167 - - 4|4 E1 predicted gene 13167 pseudo 108169160 XR_001785340 2010109P13Rik - - 6|6 D3 RIKEN cDNA 2010109P13 gene ncRNA 668136 Gm8993 EG668136 - 6|6 C2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 13482 Mm.1151 NM_010074 ENSMUSG00000035000 Dpp4 Cd26|Dpp-4|THAM - 2 C1.3|2 35.85 cM dipeptidylpeptidase 4 protein-coding 26360 Mm.208919 NM_011923 ENSMUSG00000004105 Angptl2 AI593246|AW260363|Arp2 - 2|2 B angiopoietin-like 2 protein-coding 19632 Rb(9.12)1Cam Rb1Cam - - Robertsonian translocation, Chr 9 and 12, Wallace, Cambridge 1 other 15268 Hist3 - - 11|11 histone cluster 3 other 105243854 XR_865167 Gm39586 - - 1 A1|1 predicted gene, 39586 ncRNA 109115 Mm.431327 NM_178652 ENSMUSG00000038954 Supt3 2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h - 17|17 B3 suppressor of Ty 3 protein-coding 100862100 Gm21477 - - Y|Y predicted gene, 21477 protein-coding 85165 D6Mit390 - - 6 78.49 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 390 unknown 70205 2310068C19Rik - - 14|14 RIKEN cDNA 2310068C19 gene protein-coding 15129 Mm.467412 NM_001278161 Hbb-b1 AA409645|Hbb1|Hbbt1|Hbbt2|MommeD7|beta1 - 7 E3|7 54.85 cM hemoglobin, beta adult major chain protein-coding 100042650 Gm10095 - - 12|12 D2 ribosomal protein L21 pseudogene pseudo 544922 Mm.441300 NM_001039115 ENSMUSG00000054931 Zkscan4 AI841875|Gm11272 - 13 A3.1|13 zinc finger with KRAB and SCAN domains 4 protein-coding 15894 Mm.435508 NM_010493 ENSMUSG00000037405 Icam1 CD54|Icam-1|Ly-47|MALA-2 - 9 A3|9 7.69 cM intercellular adhesion molecule 1 protein-coding 23937 Mm.389466 NM_011839 ENSMUSG00000057777 Mab21l2 - - 3|3 F1 mab-21-like 2 (C. elegans) protein-coding 258057 Olfr162-ps1 MOR131-2P - 16|16 A1 olfactory receptor 162, pseudogene 1 pseudo 20930 Mm.347512 NM_013677 ENSMUSG00000015790 Surf1 0610010F23Rik|Surf-1 - 2 A3|2 19.1 cM surfeit gene 1 protein-coding 234814 Mm.31690 NM_172761 ENSMUSG00000031816 Mthfsd AW049977|BC052066|C920004D05 - 8|8 E1 methenyltetrahydrofolate synthetase domain containing protein-coding 100039587 Gm2328 - - 3|3 C predicted gene 2328 pseudo 73052 2900076G11Rik - - 5|5 RIKEN cDNA 2900076G11 gene protein-coding 214579 Mm.393311 NM_172532 ENSMUSG00000035936 Aldh5a1 6330403E24Rik|Ahd-1|Ahd1|D630032B01Rik|SSADH|Ssdh1 - 13 A3.1|13 10.77 cM aldhehyde dehydrogenase family 5, subfamily A1 protein-coding 70572 Mm.221452 NM_023579 ENSMUSG00000030662 Ipo5 1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5 - 14|14 E4-E5 importin 5 protein-coding 102634428 XR_389148 Gm32013 - - 11 E2|11 predicted gene, 32013 ncRNA 360058 D17Jcs90 - - - DNA segment, Chr 17, John C. Schimenti 90 unknown 102632988 Gm30924 - - 13|13 predicted gene, 30924 ncRNA 104149 Ly16 Ly-16 - - lymphocyte antigen 16 protein-coding 258297 Mm.377419 NM_146300 ENSMUSG00000045559 Olfr827 MOR210-5 - 10|10 D3 olfactory receptor 827 protein-coding 64918 Mm.29981 NM_022884 ENSMUSG00000042118 Bhmt2 C81077|D13Ucla2 - 13 C3|13 47.88 cM betaine-homocysteine methyltransferase 2 protein-coding 102633522 XR_380245 Gm31330 - - 10 B1|10 predicted gene, 31330 ncRNA 435786 Gm11212 Orm-ps - 4|4 B3 orosomucoid 1 pseudogene pseudo 112350 Gasa1 - - 4 69.48 cM gastritis type A susceptibility locus 1 unknown 105246830 XR_879347 Gm42054 - - 8 E2|8 predicted gene, 42054 ncRNA 102635884 XR_375295 Gm33108 - - 2 H3|2 predicted gene, 33108 ncRNA 114057 Axtrb1 - - - anxiety-related behavior 1 unknown 74664 Mm.417823 4930433J02Rik - - 1|1 RIKEN cDNA 4930433J02 gene protein-coding 62182 D15Mit25 - - 15 20.34 cM DNA segment, Chr 15, Massachusetts Institute of Technology 25 unknown 98743 BB136667 - - - expressed sequence BB136667 unknown 100217455 NR_028550 ENSMUSG00000065734 Snord49a MBII-243 - 11 B2|11 small nucleolar RNA, C/D box 49A snoRNA 105245282 Gm40758 - - 10|10 predicted gene, 40758 ncRNA 102639923 Gm36121 - - 17|17 predicted gene, 36121 ncRNA 100035547 Loco1 - - 3 76.65 cM locomotor activity 1 unknown 112385 Eae4 - - 7 54.52 cM experimental allergic encephalomyelitis susceptibility 4 unknown 102467232 n-TAagc12 n-Ta12 - 13 A3.1|13 nuclear encoded tRNA alanine 12 (anticodon AGC) tRNA 100042859 Gm4073 - - 7 A1|7 predicted gene 4073 pseudo 62947 D11Mit328 - - 11 60.95 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 328 unknown 360079 D17Jcs11 - - - DNA segment, Chr 17, John C. Schimenti 11 unknown 100041682 Gm20881 - - Y|Y predicted gene, 20881 protein-coding 52874 Mm.261027 NM_177474 ENSMUSG00000041360 Pum3 1110069H02Rik|AA675048|D19Bwg1357e - 19 C1|19 21.96 cM pumilio RNA-binding family member 3 protein-coding 235631 Mm.102265 NM_146227 ENSMUSG00000048752 Prss50 79H19C|Tsp50 - 9 F2|9 60.79 cM protease, serine 50 protein-coding 18242 Mm.13694 NM_016978 ENSMUSG00000030934 Oat AI194874|rhg - 7 F3|7 76.3 cM ornithine aminotransferase protein-coding 97268 C230066G23Rik AU022315|C87298 - 5|5 E5 RIKEN cDNA C230066G23 gene protein-coding 61474 D7Mit116 - - 7 17.01 cM DNA segment, Chr 7, Massachusetts Institute of Technology 116 unknown 70888 Mm.74689 4921521C08Rik - - 8|8 RIKEN cDNA 4921521C08 gene protein-coding 62984 D17Mit235 - - 17 22.9 cM DNA Segment, Chr 17, Massachusetts Institute of Technology 235 unknown 102637640 XR_390584 Gm12506 - - 4 B3|4 29.88 cM predicted gene 12506 ncRNA 17089 Mm.28560 NM_025281 ENSMUSG00000067367 Lyar MLZ-264 - 5 B3|5 20.29 cM Ly1 antibody reactive clone protein-coding 62381 D14Mit110 - - 14 4.73 cM DNA segment, Chr 14, Massachusetts Institute of Technology 110 unknown 216516 Mm.386854 NM_177616 ENSMUSG00000051427 Ccdc157 4930562D19Rik|mKIAA1656 - 11|11 A1 coiled-coil domain containing 157 protein-coding 100316752 NR_035441 ENSMUSG00000084590 Mir1896 Mirn1896|mmu-mir-1896 - 13 A3.1|13 7.8 cM microRNA 1896 ncRNA 70362 Mm.479620 NM_001171640 ENSMUSG00000078129 Actl10 1700007I08Rik - 2|2 H1 actin-like 10 protein-coding 102633762 XR_381638 Gm31512 - - 12 C2|12 predicted gene, 31512 ncRNA 55990 Mm.10929 NM_018881 ENSMUSG00000040170 Fmo2 2310008D08Rik|2310042I22Rik|AW107733 - 1|1 H2.1 flavin containing monooxygenase 2 protein-coding 208098 Mm.217159 NM_172454 ENSMUSG00000011118 Panx3 3230401P04|4833413G11Rik - 9|9 A4 pannexin 3 protein-coding 105245601 XR_873844 Gm41032 - - 13 D1|13 predicted gene, 41032 ncRNA 105242811 XR_869568 Gm38920 - - 6 G2|6 predicted gene, 38920 ncRNA 692181 Igkv9-128 Gm9724 - 6|6 C1 immunoglobulin kappa chain variable 9-128 pseudo 102633967 Gm31664 - - 11|11 predicted gene, 31664 ncRNA 105244017 Gm37486 - - 1|1 predicted gene, 37486 pseudo 12516 Mm.4100 NM_009854 ENSMUSG00000025163 Cd7 - - 11 E2|11 84.85 cM CD7 antigen protein-coding 105247061 Gm42236 - - 5|5 predicted gene, 42236 ncRNA 105243222 XR_878941 Gm39201 - - 8 C1|8 predicted gene, 39201 ncRNA 27862 D0Nds23 - - - DNA segment, Nuffield Department of Surgery 23 unknown 640094 Gm7286 EG640094 - 9|9 A5.2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105504 Mm.31607 NM_207214 ENSMUSG00000061244 Exoc5 AI447711|AI448003|Gm76|PRO1912|SEC10|Sec10l1 - 14|14 C1 exocyst complex component 5 protein-coding 100046579 Gm10074 - - 17|17 u6 snRNA-associated Sm-like protein LSm5-like pseudo 100416118 Gm16165 - - 9|9 A3 tubulin, beta 2B pseudogene pseudo 258000 Olfr1545-ps1 MOR171-39P - 9|9 A5.1 olfactory receptor 1545, pseudogene 1 pseudo 58996 Mm.394118 NM_021493 ENSMUSG00000049807 Arhgap23 A330041B18Rik - 11|11 D Rho GTPase activating protein 23 protein-coding 100861694 Gm21142 - - 7 B3|7 predicted gene, 21142 pseudo 14182 Mm.265716 NM_010206 ENSMUSG00000031565 Fgfr1 AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr - 8 A2|8 14.12 cM fibroblast growth factor receptor 1 protein-coding 105246698 XR_878500 Gm41945 - - 1 E3|1 predicted gene, 41945 ncRNA 102638065 XR_381811 Gm34718 - - 12 D3|12 predicted gene, 34718 ncRNA 111944 Xltr10 - - - xenotropic long terminal repeat-containing proviral locus 10 other 74117 Mm.183102 NM_023735 ENSMUSG00000026341 Actr3 1200003A09Rik|Arp3 - 1|1 E2.3 ARP3 actin-related protein 3 protein-coding 110331 Jckm1 - - 10 34.83 cM juvenile cystic kidney modifier 1 protein-coding 74469 Mm.103259 NM_028958 ENSMUSG00000009596 Taf7l 4933438I11Rik|Taf2q - X|X E3 TATA-box binding protein associated factor 7 like protein-coding 108011 Mm.134045 NM_175550 ENSMUSG00000001998 Ap4e1 2310033A20Rik|9930028M04Rik|AV087807 - 2 F1|2 61.76 cM adaptor-related protein complex AP-4, epsilon 1 protein-coding 102467320 n-THgtg7 n-Th7 - 3 F2.1|3 nuclear encoded tRNA histidine 7 (anticodon GTG) tRNA 72053 Mm.101274 NM_028076 ENSMUSG00000034757 Tmub2 2010008E23Rik - 11|11 D transmembrane and ubiquitin-like domain containing 2 protein-coding 100504088 Gm11338 - - 13|13 A3.1 family with sequence similarity 113, member A pseudogene pseudo 195208 Mm.284719 NM_177577 ENSMUSG00000035910 Dcdc2a AW492955|Dcdc2|RU2 - 13|13 A3.1 doublecortin domain containing 2a protein-coding 100416276 Gm17040 - - 9|9 F1 predicted gene 17040 pseudo 101055850 Gm29731 - - 13|13 predicted gene, 29731 protein-coding 62658 D15Mit107 - - 15 39.79 cM DNA segment, Chr 15, Massachusetts Institute of Technology 107 unknown 12803 Mm.290924 NM_053007 ENSMUSG00000079415 Cntf AI429687 - 19 A|19 8.73 cM ciliary neurotrophic factor protein-coding 223664 Mm.277582 NM_145471 ENSMUSG00000033728 Lrrc14 E130306I01Rik|mKIAA0014 - 15|15 D3 leucine rich repeat containing 14 protein-coding 112249 Sluc6 - - 4 70.02 cM susceptibility to lung cancer 6 unknown 108547 Iapls1-28 - - - intracisternal A particle, lymphocyte specific 1-28 other 258802 Mm.377698 NM_146806 ENSMUSG00000094778 Olfr143 K18|MOR170-6 - 9|9 A5.1 olfactory receptor 143 protein-coding 110408763 LOC110408763 - - - Cyp17a1 promoter biological-region 108168965 Gm46862 - - 4 C3|4 predicted gene, 46862 pseudo 668969 Gm14366 - - X|X A1.1 developmental pluripotency associated 4 pseudogene pseudo 232970 Mm.333663 NM_001102613 ENSMUSG00000074277 Phldb3 EG232970|Gm10102 - 7|7 A3 pleckstrin homology like domain, family B, member 3 protein-coding 67200 Mm.45767 NM_026028 ENSMUSG00000030177 Ccdc77 2400002C23Rik|2700091N06Rik|AV168274 - 6|6 F1 coiled-coil domain containing 77 protein-coding 61179 D18Mit65 - - 18 2.38 cM DNA segment, Chr 18, Massachusetts Institute of Technology 65 unknown 107141 Mm.474575 NM_134144 ENSMUSG00000054827 Cyp2c50 AI266900 - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 50 protein-coding 110120557 LOC110120557 - - - VISTA enhancer mm1108 biological-region 606515 Gabarapl2-ps - - 14|14 E4 GABA(A) receptor-associated protein-like 2 pseudogene pseudo 214498 Mm.156727 NM_145991 ENSMUSG00000026361 Cdc73 8430414L16Rik|C130030P16Rik|C81219|Hrpt2 - 1 F|1 62.52 cM cell division cycle 73, Paf1/RNA polymerase II complex component protein-coding 665301 XM_011251045 ENSMUSG00000095900 Gm20773 - - Y|Y A1 predicted gene, 20773 protein-coding 102638287 Gm34887 - - 9|9 predicted gene, 34887 ncRNA 258186 Mm.173657 NR_002859 Olfr75-ps1 MOR135-20|Olfr75|V1 - 11|11 B4 olfactory receptor 75, pseudogene 1 pseudo 102634708 XR_389152 Gm11695 - - 11 E2|11 80.84 cM predicted gene 11695 ncRNA 100504052 Gm2962 100040778 - 1|1 H3 ubiquinol-cytochrome c reductase binding protein pseudogene pseudo 667776 Gm8806 EG667776 - X|X B non-POU-domain-containing, octamer binding protein pseudogene pseudo 100038982 Mm.16926 NR_033562 Gm1995 - - 12 D2|12 REX1, RNA exonuclease 1 homolog pseudogene pseudo 100628577 NR_039557 ENSMUSG00000093061 Mir5098 mmu-mir-5098|mu-mir-5098 - 5 C3.3|5 41.61 cM microRNA 5098 ncRNA 19052 Mm.260288 NM_019411 ENSMUSG00000020349 Ppp2ca PP2A|R75353 - 11|11 B1.3 protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform protein-coding 102632299 Mm.205334 XR_873899 Gm30411 - - 13 D2.1|13 predicted gene, 30411 protein-coding 329623 Mm.490730 NR_040590 ENSMUSG00000085320 Gm11548 E330009D11 - 3|3 B predicted gene 11548 ncRNA 100124349 Traj39 Gm16669 - 14|14 C2 T cell receptor alpha joining 39 other 102633598 XR_375970 Gm31384 - - 3 G1|3 predicted gene, 31384 ncRNA 105245164 XR_873102 Gm40655 - - 13 A1|13 predicted gene, 40655 ncRNA 436198 Rhox7b Gm14543|Rhox7-like - X A3.3|X reproductive homeobox 7B pseudo 14313 Mm.4913 NM_008046 ENSMUSG00000021765 Fst AL033346|FS - 13|13 D2.2 follistatin protein-coding 100416550 Gm11422 - - 11|11 C GTP binding protein 3 pseudogene pseudo 56323 Mm.20437 NM_019874 ENSMUSG00000036052 Dnajb5 1110058L06Rik|AI462558|Hsc40|Hsp40-3 - 4|4 A5 DnaJ heat shock protein family (Hsp40) member B5 protein-coding 246190 Mm.221073 NM_139310 ENSMUSG00000034990 Otoa - - 7|7 F2 otoancorin protein-coding 111630 Tcra-V18 - - - T cell receptor alpha, variable 18 other 432988 Mm.462132 NM_001004171 ENSMUSG00000097050 Gm9918 EG432988 - 15 F3|15 predicted gene 9918 unknown 101197 Mm.241063 NM_178898 ENSMUSG00000045466 Zfp956 AI894139 - 6|6 B2.3 zinc finger protein 956 protein-coding 71422 Mm.490927 NR_045426 5430428K19Rik - - X|X A1.1 RIKEN cDNA 5430428K19 gene ncRNA 104730 AA516601 - - - expressed sequence AA516601 unknown 258598 Mm.271453 NM_146605 ENSMUSG00000078116 Olfr828 MOR149-1 - 9|9 A2 olfactory receptor 828 protein-coding 102467372 n-TSaga3 n-Ts3 - - nuclear encoded tRNA serine 3 (anticodon AGA) tRNA 668709 Gm9311 EG668709 - 17|17 E1.3 UDP-glucuronate decarboxylase 1 pseudogene pseudo 402725 C530045E16Rik - - 1|1 RIKEN cDNA C530045E16 gene protein-coding 100039580 Gm2324 - - 9|9 E3.1 gem (nuclear organelle) associated protein 8 pseudogene pseudo 102465761 NR_106113 ENSMUSG00000099101 Mir7653 Gm27900|mmu-mir-7653 - 11|11 B5 microRNA 7653 ncRNA 105246785 XR_878758 Gm42023 - - 5 F|5 predicted gene, 42023 ncRNA 50880 Mm.25724 NM_016717 ENSMUSG00000026307 Scly 9830169H08|A930015N15Rik|SCL|Scly1|Scly2 - 1|1 D selenocysteine lyase protein-coding 246194 Ltnr5 - - - lentinan responsive 5 protein-coding 100503944 Gm19980 - - 4|4 23.55 cM predicted gene, 19980 ncRNA 14056 Mm.246688 NM_007971 ENSMUSG00000029687 Ezh2 Enx-1|Enx1h|KMT6|mKIAA4065 - 6 B2.3|6 22.92 cM enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 102636568 Gm33598 - - 2|2 predicted gene, 33598 ncRNA 102634266 XR_388083 Gm31893 - - 8 E1|8 predicted gene, 31893 ncRNA 100504003 Gm14839 - - X|X 45.68 cM predicted gene 14839 protein-coding 102632532 XR_378089 Gm30583 - - 6 G1|6 predicted gene, 30583 ncRNA 108168312 LOC108168312 - - 17 A1 E3 ubiquitin-protein ligase TRIP12-like pseudo 100035197 Gsi1 - - 8 32.3 cM glomerulsclerosis index 1 unknown 21190 T(4;8)Tp(8q8p)36H - - - reciprocal translocation, Chr 4 and 8, Harwell 36 other 102638192 Gm34812 - - 4|4 predicted gene, 34812 ncRNA 258012 Olfr1159-ps1 MOR135-23P - 2|2 D olfactory receptor 1159, pseudogene 1 pseudo 192173 Mm.262300 NM_001033231 ENSMUSG00000061111 Mcrip1 Fam195b - 11|11 E2 MAPK regulated corepressor interacting protein 1 protein-coding 242406 Mm.259311 NM_172866 ENSMUSG00000028468 Rgp1 1110029E03Rik|AI527196|F730001J03|mKIAA0258 - 4|4 A5 RAB6A GEF compex partner 1 protein-coding 54420 Mm.25836 NM_018778 ENSMUSG00000050520 Cldn8 AI648025 - 16|16 C3.3 claudin 8 protein-coding 105245115 Gm40609 - - 10|10 predicted gene, 40609 ncRNA 107489 Tel3q - - - telomeric sequence, Chr 3, q arm protein-coding 102638584 XR_377582 Gm35113 - - 6 B2.1|6 predicted gene, 35113 ncRNA 102467521 n-TEctc11 n-Te11 - 13 A2|13 nuclear encoded tRNA glutamic acid 11 (anticodon CTC) tRNA 100042419 Trav7d-3 Gm13956 - 14|14 C2 T cell receptor alpha variable 7D-3 other 670100 Gm9480 - - 3 H2|3 high mobility group box 1 pseudogene pseudo 244962 Mm.439873 NM_172926 ENSMUSG00000032422 Snx14 B830022K16|C330035N22Rik|YR-14 - 9|9 E3.1 sorting nexin 14 protein-coding 27727 D1Sta6 - - 1 80.4 cM DNA segment, Chr 1, Philip Stanier 6 unknown 71207 Mm.24397 NM_027722 ENSMUSG00000020029 Nudt4 4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P - 10|10 C2 nudix (nucleoside diphosphate linked moiety X)-type motif 4 protein-coding 100040899 XM_001475438 Gm15142 - - X F3|X predicted gene 15142 protein-coding 100035359 Skmw16 - - 8 38.64 cM skeletal muscle weight 16 unknown 97866 C78524 - - - expressed sequence C78524 protein-coding 105246420 XR_877352 Gm41710 - - 18 B3|18 predicted gene, 41710 ncRNA 102633035 Mm.411422 NR_110509 ENSMUSG00000101941 Gm28979 - - 9 E4|9 predicted gene 28979 ncRNA 387163 NR_029557 ENSMUSG00000065592 Mir145a Mir145|Mirn145|mir-145a|mmu-mir-145|mmu-mir-145a - 18 E1|18 microRNA 145a ncRNA 76392 Mm.295205 NR_045932 ENSMUSG00000086327 Slfn5os 1700003F17Rik - 11|11 C schlafen 5, opposite strand ncRNA 71084 Mm.373897 4933409D19Rik - - 1|1 E4-F RIKEN cDNA 4933409D19 gene unknown 110120496 LOC110120496 - - - VISTA enhancer mm1483 biological-region 100417231 Gm18470 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 211484 Mm.332756 NM_207228 ENSMUSG00000060771 Tsga10 4933432N21Rik|AI843383|Gm217|Mtsga10 - 1|1 B testis specific 10 protein-coding 108167943 n-TDgtc10 Trnad-guc|n-Td10 - 11 A1|11 nuclear encoded tRNA aspartic acid 10 (anticodon GTC) tRNA 667103 XM_988334 Gm13570 - - 2|2 C1.1 predicted gene 13570 protein-coding 68015 Mm.123366 NM_026508 ENSMUSG00000005981 Trap1 2410002K23Rik|HSP75 - 16 A1|16 2.38 cM TNF receptor-associated protein 1 protein-coding 384557 Mm.486145 NM_054059 ENSMUSG00000053228 Ceacam3 EG384557|Psg24|cea12 - 7|7 A2 carcinoembryonic antigen-related cell adhesion molecule 3 protein-coding 70099 Mm.206841 NM_133786 ENSMUSG00000034349 Smc4 2500002A22Rik|C79747|SMC-4|Smc4l1 - 3|3 E1 structural maintenance of chromosomes 4 protein-coding 100417219 Gm18458 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 70026 Mm.22613 NM_027292 ENSMUSG00000023995 Tspo2 2510027D20Rik|Bzrpl1 - 17|17 C translocator protein 2 protein-coding 102639599 Gm35872 - - 5|5 predicted gene, 35872 ncRNA 105244553 XR_867626 Gm40146 - - 3 G1|3 predicted gene, 40146 ncRNA 68904 Mm.142570 NM_026868 ENSMUSG00000040396 Abhd13 1110065L07Rik|AI463703|AI788994 - 8|8 A1.1 abhydrolase domain containing 13 protein-coding 105245754 XR_874629 Gm41153 - - 14 C2|14 predicted gene, 41153 ncRNA 78486 2210414L08Rik - - 18|18 RIKEN cDNA 2210414L08 gene protein-coding 102635868 Mm.404614 XR_378029 Gm26728 - - 6 F3|6 predicted gene, 26728 ncRNA 20538 Mm.57040 NM_009209 ENSMUSG00000055368 Slc6a2 NE-T|NET|Slc6a5 - 8 C5|8 44.99 cM solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2 protein-coding 50994 Mm.389897 NM_016664 ENSMUSG00000091510 Mtag2 MAG - 7|7 B3 metastasis associated gene 2 ncRNA 217708 Mm.311904 NM_173756 ENSMUSG00000085793 Lin52 5830457H20Rik - 12|12 D1 lin-52 homolog (C. elegans) protein-coding 110125 Ifi15 - - - interferon activated gene 15 protein-coding 100416330 Ranbp2-ps2 Gm18044 - 7|7 A1 RAN binding protein 2, pseudogene 2 pseudo 53230 3B1 - - - DNA segment, 3B1 Research Genetics unknown 665575 Gm7695 EG665575 - 13 B3|13 ribosomal protein L10A pseudogene pseudo 76933 Mm.271275 NM_029803 ENSMUSG00000079017 Ifi27l2a 2310061N23Rik|Ifi27|Isg12|Isg12(b1) - 12|12 E interferon, alpha-inducible protein 27 like 2A protein-coding 78619 Mm.207345 NM_030139 ENSMUSG00000073176 Zfp449 9530049C15Rik - X|X A6 zinc finger protein 449 protein-coding 68196 Mm.358714 NM_024219 ENSMUSG00000031839 Hsbp1 0610007A03Rik|AA408769|Hsp25 - 8|8 E1 heat shock factor binding protein 1 protein-coding 12310 Mm.4361 NM_007587 ENSMUSG00000030669 Calca CA|CGRP-1|CGRP1|Calc|Calc1|Cgrp|Ct|Ctn - 7 F1|7 59.99 cM calcitonin/calcitonin-related polypeptide, alpha protein-coding 102635279 XR_386211 Gm32660 - - 18 C|18 predicted gene, 32660 ncRNA 108167368 XR_001780507 LOC108167368 - - 12 A1.2 uncharacterized LOC108167368 protein-coding 105246259 Gm41567 - - 17|17 predicted gene, 41567 ncRNA 109936 Olfr40 - - - olfactory receptor 40 protein-coding 12763 Mm.8396 NM_007717 ENSMUSG00000016756 Cmah - - 13|13 A3.1 cytidine monophospho-N-acetylneuraminic acid hydroxylase protein-coding 109616 Pepc Dip-1|Pep-3|Pep3 - 1|1 peptidase C protein-coding 102467404 n-TVcac4 n-Tv12 - 13 A3.1|13 nuclear encoded tRNA valine 4 (anticodon CAC) tRNA 628475 XM_017312482 ENSMUSG00000109516 Gm6882 EG628475 - 7|7 A3 predicted gene 6882 protein-coding 108167810 XR_001779768 Gm46224 - - 10 B3|10 predicted gene, 46224 ncRNA 102637539 Mm.367802 XR_379749 Gm28167 - - 9 E3.3|9 predicted gene 28167 ncRNA 360104 D17Brg22 - - - DNA segment, Chr 17, David E. Bergstrom 22 unknown 105242631 XR_868978 Gm38790 - - 6 B1|6 predicted gene, 38790 ncRNA 100316712 NR_035492 ENSMUSG00000089432 Mir1966 mir-1966|mmu-mir-1966 - 8 D3|8 53.04 cM microRNA 1966 ncRNA 20527 Mm.395108 NM_011401 ENSMUSG00000003153 Slc2a3 AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3 - 6 F1|6 57.82 cM solute carrier family 2 (facilitated glucose transporter), member 3 protein-coding 98166 C87583 - - - expressed sequence C87583 unknown 108167426 XR_001778121 Gm45086 - - 7 B4|7 predicted gene 45086 ncRNA 17198 mc - - - marcel unknown 319899 Mm.128153 NM_177030 ENSMUSG00000032198 Dock6 2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395 - 9|9 A3 dedicator of cytokinesis 6 protein-coding 329814 Mm.488991 Lasc1 4931422A14 - 4|4 A5 uncharacterized protein 4931422A14 protein-coding 102638163 Gm34792 - - 14|14 predicted gene, 34792 pseudo 331011 Mm.271554 NR_045332 ENSMUSG00000102013 E330023G01Rik E330023G01 - 9|9 E3.3 RIKEN cDNA E330023G01 gene ncRNA 78385 2310063J23Rik - - 16|16 RIKEN cDNA 2310063J23 gene protein-coding 415115 Mm.474586 NM_001082974 ENSMUSG00000039873 Neurl2 Neur2|Ozz|Ozz-E3 - 2|2 H3 neuralized E3 ubiquitin protein ligase 2 protein-coding 102631820 XR_378585 Gm30061 - - 7 F3|7 predicted gene, 30061 ncRNA 100504141 Mm.130252 XR_105118 Gm20083 Gm44670 - 7 D1|7 41.75 cM predicted gene, 20083 ncRNA 116775 Dautb4 - - 11 46.74 cM dopamine uptake transporter binding 4 unknown 226123 Mm.259441 NM_198108 ENSMUSG00000049670 Morn4 - - 19|19 C3 MORN repeat containing 4 protein-coding 232745 Gm4877 - - 6 B2.1|6 ribosomal protein L7A pseudogene pseudo 12759 Mm.200608 NM_013492 ENSMUSG00000022037 Clu AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2 - 14 D1|14 34.36 cM clusterin protein-coding 258472 Mm.271395 NM_146479 Olfr899 GA_x6K02T2PVTD-32060891-32061865|MOR170-8 - 9|9 A5 olfactory receptor 899 protein-coding 668827 Gm13928 - - 2|2 E3 SUMO1/sentrin specific peptidase 1 pseudogene pseudo 259138 Olfr200-ps1 MOR182-10P - 16|16 C1.3 olfactory receptor 200, pseudogene 1 pseudo 102637061 XR_384294 Gm33966 - - 15 E2|15 predicted gene, 33966 ncRNA 107089 AA416451 - - - expressed sequence AA416451 unknown 100049584 Sbmd5 Pmsbmd1 - - spinal bone mineral density 5 unknown 359910 DXMgc49 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 49 unknown 435640 Gm5702 EG435640 - 1|1 E2.1 eukaryotic translation elongation factor pseudogene pseudo 117567 40.MMHAP76FLF4 - - - DNA segment, 40.MMHAP76FLF4 unknown 67150 Mm.96867 NM_025999 ENSMUSG00000030788 Rnf141 2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230 - 7|7 E3 ring finger protein 141 protein-coding 170801 Idd5.1 Idd5a - - insulin dependent diabetes susceptibility 5.1 unknown 108167979 XR_001780545 Gm46333 - - 12 A1.1|12 predicted gene, 46333 ncRNA 102637044 Gm33953 - - X|X predicted gene, 33953 ncRNA 791317 Mm.310688 Gm9921 - - - predicted gene 9921 protein-coding 381714 Mm.368256 NM_198666 ENSMUSG00000033219 Gm9758 - - 5 A2|5 predicted gene 9758 protein-coding 109280102 LOC109280102 Mm1312 - - VISTA enhancer mm1312 biological-region 545507 Gm5843 EG545507 - 3|3 A1 carbonic anhydrase 1 pseudogene pseudo 108167821 Gm46234 - - 10 C1|10 ATP synthase subunit f, mitochondrial pseudogene pseudo 102639218 XR_390602 Gm35578 - - 4 B3|4 predicted gene, 35578 ncRNA 105245165 XR_873103 Gm40656 - - 13 A1|13 predicted gene, 40656 ncRNA 100034819 Musz3 Ms3 - - muscle size 3 unknown 105245019 XR_870920 Gm40533 - - 9 D|9 predicted gene, 40533 ncRNA 207818 Mm.26282 NM_174992 ENSMUSG00000053559 Smagp - - 15|15 F1 small cell adhesion glycoprotein protein-coding 106572 Mm.29274 NM_133685 ENSMUSG00000056515 Rab31 1700093E07Rik|AI415285|Rab22B - 17|17 E1.1 RAB31, member RAS oncogene family protein-coding 113860 Mm.377157 NM_053233 ENSMUSG00000115236 Vmn1r11 V1rc3 - 6|6 B3 vomeronasal 1 receptor 11 protein-coding 102637659 XR_879283 Gm34413 - - 8 E1|8 predicted gene, 34413 ncRNA 105244234 Gm13814 - - 2|2 51.08 cM predicted gene 13814 ncRNA 100049164 Mm.457894 B130046B21Rik - - - RIKEN cDNA B130046B21 gene unknown 105244319 Gm39953 - - 2|2 predicted gene, 39953 ncRNA 433520 Mm.425117 NM_001024825 Gm14403 - - 2 H4|2 predicted gene 14403 ncRNA 73332 Mm.425204 NM_028506 ENSMUSG00000028637 Ccdc30 1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik - 4|4 D2.1 coiled-coil domain containing 30 protein-coding 70675 Mm.274493 NM_173443 ENSMUSG00000045210 Vcpip1 4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850 - 1|1 A2 valosin containing protein (p97)/p47 complex interacting protein 1 protein-coding 360074 D17Jcs81 - - - DNA segment, Chr 17, John C. Schimenti 81 unknown 61051 D9Mit217 - - 9 2.46 cM DNA segment, Chr 9, Massachusetts Institute of Technology 217 unknown 62364 D14Mit251 - - 14 11.58 cM DNA Segment, Chr 14 Massachusetts Institute of Technology 251 unknown 108168016 XR_001780647 Gm46365 - - 12 D1|12 predicted gene, 46365 ncRNA 100417398 Gm13633 - - 2|2 C2 F-box and WD-40 domain protein 2 pseudogene pseudo 117158 Mm.210437 NM_054038 ENSMUSG00000038791 Scgb3a2 LuLeu1|Pnsp1|UGRP1|Utgrp1 - 18|18 B3 secretoglobin, family 3A, member 2 protein-coding 100038399 Mm.484627 Gm10579 - - - predicted gene 10579 unknown 102633333 Scgb2b13-ps Abpbg13-ps - 7 B1|7 secretoglobin, family 2B, member 13, pseudogene pseudo 97818 C80831 - - - expressed sequence C80831 protein-coding 103113 AA589562 - - - expressed sequence AA589562 unknown 102633690 XR_377390 Gm31453 - - 6 A3.3|6 predicted gene, 31453 ncRNA 100043957 Gm4732 - - X A2|X predicted gene 4732 protein-coding 13708 elap lap - - eye lens aplasia unknown 61265 D2Mit181 - - 2 34.08 cM DNA segment, Chr 2, Massachusetts Institute of Technology 181 unknown 21075 T(12;17)9Gso T9Gso - - reciprocal translocation, Chr 12 and 17, Generoso 9 other 228767 Mm.231617 Tmem74bos - - 2|2 G3 transmembrane 74B, opposite strand protein-coding 622551 Gm6331 EG622551 - 10|10 B5.3 thioredoxin-like 4B pseudogene pseudo 268288 Mm.213322 NM_001013766 ENSMUSG00000051354 Samd3 Gm623 - 10|10 A4 sterile alpha motif domain containing 3 protein-coding 56561 D6Ott112 - - 6 63.44 cM DNA segment, Chr 6, Animal Research Centre, Ottawa 112 unknown 27930 D0Ffm4 2C2b - - DNA segment, Universitat Frankfurt, Frankfurt/Main 4 unknown 666590 Gm8180 EG666590 - 14|14 C1 predicted gene 8180 pseudo 217837 Mm.482192 NM_172584 ENSMUSG00000057963 Itpk1 BC031182 - 12|12 E inositol 1,3,4-triphosphate 5/6 kinase protein-coding 620417 Mm.378085 NR_038036 ENSMUSG00000111901 Gm6150 - - 10 A1|10 predicted gene 6150 ncRNA 102636657 XR_389051 Gm33662 - - 11 D|11 predicted gene, 33662 ncRNA 105245495 XR_873376 Gm40943 - - 13 A5|13 predicted gene, 40943 ncRNA 56215 Mm.297078 NM_019567 ENSMUSG00000022185 Acin1 2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670 - 14|14 C2 apoptotic chromatin condensation inducer 1 protein-coding 118435 Ms10v MMS10-V - - minisatellite 10v detected by probe MMS10 unknown 100503157 Mm.445554 NR_040412 ENSMUSG00000084997 Gm15471 - - 3 F2.2|3 45.52 cM predicted gene 15471 ncRNA 61647 D8Mit205 - - 8 28.85 cM DNA segment, Chr 8, Massachusetts Institute of Technology 205 unknown 108169142 XR_001785251 Gm46960 - - 6 B3|6 predicted gene, 46960 ncRNA 100504301 Mm.482200 6230426M11Rik EG668056 - 12|12 E RIKEN cDNA 6230426M11 gene unknown 102633170 XR_376509 Gm31065 - - 4 C7|4 predicted gene, 31065 ncRNA 100862203 Mm.484235 NM_001324550 Gm6712 EG626854 - 17 A3.1|17 9.77 cM predicted gene 6712 protein-coding 61737 D4Mit284 - - 4 74.64 cM DNA segment, Chr 4, Massachusetts Institute of Technology 284 unknown 109872 Thy2 Thy-2 - - thymus cell antigen 2 protein-coding 667807 Gm8826 EG667807 - 3|3 A1 ubiquitin-like domain containing CTD phosphatase 1 pseudogene pseudo 16740 L1Md-Tf9 - - - L1 repeat, Tf subfamily, member 9 other 102636034 XR_387977 Gm33218 - - 8 D3|8 predicted gene, 33218 ncRNA 100043910 Mm.468546 NR_033632 ENSMUSG00000097065 A630075F10Rik 4831414D02|Gm4722 - 2 H3|2 RIKEN cDNA A630075F10 gene ncRNA 20871 Mm.261572 NM_020572 ENSMUSG00000070837 Aurkc AIE1|AIK3|ARK-3|IAK3|Stk13 - 7 A1|7 4.06 cM aurora kinase C protein-coding 105243321 XR_879319 Gm39277 - - 8 E1|8 predicted gene, 39277 ncRNA 216725 Mm.110597 NM_175643 ENSMUSG00000036545 Adamts2 ADAM-TS 2|ADAM-TS2|ADAMTS-2|PC I-NP|PCINP|pNPI - 11|11 B1.3 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2 protein-coding 100040410 Mm.379645 XR_387061 Gm14957 - - X E3|X predicted gene 14957 unknown 493066 Lbm3 - - - lean body mass 3 unknown 12933 Mm.290995 NM_007765 ENSMUSG00000029121 Crmp1 CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3 - 5 B3|5 19.96 cM collapsin response mediator protein 1 protein-coding 56417 Mm.316628 NM_019655 ENSMUSG00000027951 Adar AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR - 3|3 F1 adenosine deaminase, RNA-specific protein-coding 105246465 XR_877478 Gm41751 - - 18 E1|18 predicted gene, 41751 ncRNA 100035520 Pbrbc1 - - - peripheral blood RBC 1 unknown 11576 Mm.358570 NM_007423 ENSMUSG00000054932 Afp - - 5 E1|5 44.77 cM alpha fetoprotein protein-coding 100036019 Vmmt16 - - - vertebral morphology and mechanical traits 16 unknown 102639650 XR_001784900 ENSMUSG00000105078 Vamp9 Gm35911 - 5 E4|5 vesicle-associated membrane protein 9 protein-coding 257959 Mm.335076 NM_207665 ENSMUSG00000096109 Olfr1537 K4|MOR171-32P|MOR171-41P|Olfr144|Olfr1537-ps1 - 9|9 A5.1 olfactory receptor 1537 protein-coding 102634410 XR_375781 Gm31998 - - 3 F1|3 predicted gene, 31998 ncRNA 193740 Mm.6388 NM_010479 ENSMUSG00000091971 Hspa1a Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1 - 17 B1|17 18.51 cM heat shock protein 1A protein-coding 61972 D8Mit313 - - 8 55.07 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 313 unknown 215690 Mm.34977 NM_173437 ENSMUSG00000009418 Nav1 9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1 - 1|1 E4 neuron navigator 1 protein-coding 68836 Mm.248163 NM_026851 ENSMUSG00000010406 Mrpl52 1110047B07Rik - 14|14 C2 mitochondrial ribosomal protein L52 protein-coding 100040011 Gm14673 - - X A7.1|X coiled-coil domain containing 75 pseudogene pseudo 57263 Mm.21123 NM_023881 ENSMUSG00000022650 Retnlb 9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3 - 16 B5|16 30.75 cM resistin like beta protein-coding 102634049 XR_865773 Gm31728 - - 1 H4|1 predicted gene, 31728 ncRNA 52864 Mm.29935 NM_177472 ENSMUSG00000039738 Slx4 AI256635|AI426760|Btbd12|D16Bwg1016e - 16 A1|16 2.34 cM SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae) protein-coding 102636548 XR_383923 Gm33584 - - 15 B3.1|15 predicted gene, 33584 ncRNA 107683 Tria3 - - 17 19.74 cM T cell receptor induced activation 3 unknown 319530 Mm.11395 NM_178763 ENSMUSG00000039238 Zfp750 A030007D23Rik|Znf750 - 11|11 E2 zinc finger protein 750 protein-coding 14829 Mm.4687 NM_008177 ENSMUSG00000031364 Grpr GRP-R - X F4|X 75.63 cM gastrin releasing peptide receptor protein-coding 102634811 XR_869861 Gm32309 - - 7 E3|7 predicted gene, 32309 ncRNA 668804 Gm9369 EG668804 - 3|3 G1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene pseudo 114306 Lrnx12 - - 1 55.04 cM learning-contextual 12 unknown 735288 NR_109835 ENSMUSG00000094403 Mir692-2 Mir692-2a|Mir692-3|Mirn692-2|Mirn692-2a|mir-692-2|mmu-mir-692-2 - 4 D2.2|4 microRNA 692-2 ncRNA 319710 Mm.2962 NM_028127 ENSMUSG00000048285 Frmd6 2610019M19Rik|4930488L10Rik|AW212977|Willin - 12|12 C2 FERM domain containing 6 protein-coding 22673 Mm.1161 NM_009549 ENSMUSG00000031351 Zfp185 P1|Znf185 - X A7.3|X 37.29 cM zinc finger protein 185 protein-coding 105245887 XR_875036 Gm41269 - - 15 A1|15 predicted gene, 41269 ncRNA 105243696 Mm.8294 Gm15063 - - X|X 38.26 cM predicted gene 15063 ncRNA 109280145 LOC109280145 Mm1341 - - VISTA enhancer mm1341 biological-region 435732 XM_888144 Gm5709 EG435732 - 3|3 D predicted gene 5709 protein-coding 61366 D4Mit197 D4Mit197a - 4 31.13 cM DNA segment, Chr 4, Massachusetts Institute of Technology 197 protein-coding 61433 D5Mit242 - - 5 61.73 cM DNA segment, Chr 5, Massachusetts Institute of Technology 242 unknown 27748 D2Dcr14 - - - DNA segment, Chr 2, Derry C. Roopenian 14 unknown 319430 Mm.239570 NM_176912 ENSMUSG00000074361 C5ar2 C5L2|E030029A11Rik|Gpr77 - 7|7 A2 complement component 5a receptor 2 protein-coding 60896 D9Mit1000 D8Mit46 - 9|9 DNA segment, Chr 9, Massachusetts Institute of Technology 1000 unknown 319351 Mm.335386 C530025M11Rik - - 9|9 RIKEN cDNA C530025M11 gene protein-coding 53095 FBLA2-3 - - - DNA segment, FBLA2-3 unknown 105246045 XR_875680 Gm41405 - - 15 F2|15 predicted gene, 41405 ncRNA 625347 Mm.389084 NM_001039041 ENSMUSG00000057223 Gm6578 EG625347 - 6 A1|6 mitochondrial ribosomal protein L32 pseudogene pseudo 72804 Mm.404758 9130017K11Rik 2810451K12Rik - 11|11 B3 RIKEN cDNA 9130017K11 gene unknown 667211 Gm13296 - - 2|2 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105246986 Gm42174 - - X|X predicted gene, 42174 ncRNA 27078 Mm.261226 NM_013717 ENSMUSG00000001039 B9d1 AW045994|B9|Eppb9 - 11|11 B2 B9 protein domain 1 protein-coding 114259 Manz4 QTL-C6.1 - - mandible size 4 unknown 27366 Mm.172411 NM_025299 ENSMUSG00000057130 Txnl4a D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa - 18 E3|18 53.34 cM thioredoxin-like 4A protein-coding 546993 Gm6008 EG546993 - 7|7 F1 voltage-dependent anion channel 2 pseudogene pseudo 67855 Mm.183043 NM_026414 ENSMUSG00000033508 Asprv1 2300003P22Rik|AA986851|SASP|SASPase|Taps - 6|6 D1 aspartic peptidase, retroviral-like 1 protein-coding 105244959 XR_872874 Gm40477 - - 12 D2|12 predicted gene, 40477 ncRNA 667216 Gm8520 EG667216 - 9|9 E3.3 ribosomal protein S2 pseudogene pseudo 71291 Mm.488101 4933435E02Rik - - 18|18 B1 RIKEN cDNA 4933435E02 gene protein-coding 100035276 Chlq3 - - 3 66.69 cM circulating hormone level QTL 3 unknown 381476 Mm.188334 NM_198659 ENSMUSG00000047940 Stpg2 B930007M17Rik|Gm1017 - 3|3 H1 sperm tail PG rich repeat containing 2 protein-coding 433943 Gstm2-ps1 EG433943|Gm5562 - 5|5 F glutathione S-transferase mu 2 (muscle), pseudogene 1 pseudo 102467329 n-TLaag3 n-Tl3 - - nuclear encoded tRNA leucine 3 (anticodon AAG) tRNA 114647 Mmtg1 - - 4 33.96 cM modifier of mammary tumor growth 1 unknown 668907 Gm9424 EG668907 - 3|3 H4 predicted gene 9424 pseudo 70041 2610524E12Rik - - 11|11 RIKEN cDNA 2610524E12 gene protein-coding 667941 Gm8888 EG667941 - 15|15 F1 predicted gene 8888 pseudo 102639348 XR_384108 Gm35682 - - 15 D1|15 predicted gene, 35682 ncRNA 105246750 Gm41992 - - 3|3 predicted gene, 41992 ncRNA 61750 D4Mit253 - - 4 83.49 cM DNA segment, Chr 4, Massachusetts Institute of Technology 253 unknown 68119 Mm.390108 NM_024217 ENSMUSG00000031875 Cmtm3 9430096L06Rik|AI413895|BNAS2|Cklfsf3 - 8|8 D3 CKLF-like MARVEL transmembrane domain containing 3 protein-coding 100861490 NR_046143 ENSMUSG00000096015 n-R5s134 Rn5s19 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 134 rRNA 282627 D15Gsk3 - - - DNA segment, Chr 15, GlaxoSmithKline 3 unknown 52213 D4Ertd100e - - 4 63.08 cM DNA segment, Chr 4, ERATO Doi 100, expressed unknown 108218 Cox6a-ps - - - cytochrome c oxidase subunit VI, pseudogene pseudo 665110 Gm15568 EG665110 - 10 A1|10 eukaryotic translation initiation factor 4A1 pseudogene pseudo 101700 Mm.39043 NM_198012 ENSMUSG00000073968 Trim68 AI894158|F730114J12Rik|Rnf137|SS-56 - 7|7 E3 tripartite motif-containing 68 protein-coding 111516 Pmv8 Pmv-8 - - polytropic murine leukemia virus 8 other 26434 Mm.180750 NM_023043 ENSMUSG00000027338 Prnd AI450264|Dpl|PrPLP|doppel - 2 F2|2 64.07 cM prion like protein doppel protein-coding 67937 Mm.23002 NM_182991 ENSMUSG00000035964 Tmem59l 5330410G16Rik - 8|8 B3.3 transmembrane protein 59-like protein-coding 668045 Pgam1-ps2 EG668045 - 7 A3|7 phosphoglycerate mutase 1, pseudogene 2 pseudo 436336 Mm.357666 NM_001324517 Gm5767 EG436336|Gm43786 - 16|16 A1 predicted gene 5767 protein-coding 108168723 XR_001783133 LOC108168723 - - - uncharacterized LOC108168723 ncRNA 668121 Gm8984 EG668121 - 5|5 A3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 110436 Evi21 - - - ecotropic viral integration site 21 protein-coding 102465187 NR_105780 ENSMUSG00000098366 Mir145b Gm27644|mmu-mir-145b - 18|18 E2 microRNA 145b ncRNA 75154 Mm.399341 NR_152136 4930542M03Rik - - 17|17 C RIKEN cDNA 4930542M03 gene ncRNA 51798 Mm.291776 NM_016772 ENSMUSG00000053898 Ech1 AA617331 - 7|7 B1 enoyl coenzyme A hydratase 1, peroxisomal protein-coding 100040257 Mm.417081 Gm13180 - - 2|2 A1 predicted gene 13180 protein-coding 102633989 XR_867988 Gm31682 - - 4 C7|4 predicted gene, 31682 ncRNA 434476 Gm5624 EG434476 - 14|14 C1 predicted gene 5624 pseudo 625758 Gm6619 - - 6 F3|6 predicted gene 6619 protein-coding 100036243 Epfpq3 Epf%q3 - - epididymal fat percentage QTL 3 unknown 270234 Rpl23a-ps7 EG270234|Gm5056 - 7|7 B1 ribosomal protein L23A, pseudogene 7 pseudo 666052 Vmn2r-ps109 EG666052|Gm7907 - 13|13 B3 vomeronasal 2, receptor, pseudogene 109 pseudo 100534392 Gm21052 - - 6|6 D1 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase pseudogene pseudo 100523 AA516953 - - - expressed sequence AA516953 unknown 102634461 XR_387412 Gm32039 - - 1 E4|1 predicted gene, 32039 ncRNA 111655 Iap17-1 IapH-6 - - intracisternal A particles, H2 linked other 269739 Mm.136112 BC022713 D830038L22 - 6|6 B3 cDNA sequence BC022713 unknown 104015 Mm.187079 NM_001045515 ENSMUSG00000022973 Synj1 A930006D20Rik|AA675315|mKIAA0910 - 16|16 C3.3 synaptojanin 1 protein-coding 105244038 Gm39723 - - 11|11 predicted gene, 39723 ncRNA 61813 D2Mit370 - - 2 24.51 cM DNA segment, Chr 2, Massachusetts Institute of Technology 370 unknown 100043313 Gm4353 - - 7 F1|7 nucleoporin 35 pseudogene pseudo 105246956 XR_880532 Gm42149 - - 5 F|5 predicted gene, 42149 ncRNA 74052 Mm.189573 NM_028735 ENSMUSG00000032514 Ttc21a 4921538N17Rik|AA387572|Thm2 - 9|9 F3-F4 tetratricopeptide repeat domain 21A protein-coding 100038602 Mm.417074 NR_045746 ENSMUSG00000116505 Gm10865 - - 15 E1|15 predicted gene 10865 ncRNA 61905 D2Mit448 - - 2 65.66 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 448 unknown 665563 Mm.153030 NM_026788 ENSMUSG00000029376 Mthfd2l 1110019K23Rik|C630010D07Rik - 5|5 E1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like protein-coding 629732 Rps8-ps1 EG629732|Gm6998 - 10|10 B4 ribosomal protein S8, pseudogene 1 pseudo 101123 D6Mgi31 AI528556 - - DNA Segment, Chr 6, Mouse Genome Informatics 31 unknown 108168449 LOC108168449 - - X E1 histone H2A-Bbd type 2/3-like pseudo 102467602 n-TTagt3 n-Tt3 - 13 A3.1|13 nuclear encoded tRNA threonine 3 (anticodon AGT) tRNA 360037 D17Jcs9 - - - DNA segment, Chr 17, John C. Schimenti 9 unknown 243813 Mm.347643 NM_175529 ENSMUSG00000043432 Leng9 9530024C23Rik|F630035L11Rik - 7|7 A1 leukocyte receptor cluster (LRC) member 9 protein-coding 668371 Gm9135 EG668371 - 7 B1|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 77053 Mm.210845 NM_024451 ENSMUSG00000036817 Sun1 4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810 - 5|5 G2 Sad1 and UNC84 domain containing 1 protein-coding 102638326 XR_385588 Gm34917 - - 17 B3|17 predicted gene, 34917 ncRNA 671190 Gm9521 - - 7 A2|7 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 546643 Mm.322624 XM_001477102 I830127L07Rik Ly6a2 - 15|15 D3 RIKEN cDNA I830127L07 gene protein-coding 72226 Mm.491094 1700019L13Rik - - 9|9 F4 RIKEN cDNA 1700019L13 gene protein-coding 14904 Mm.19080 NM_013818 ENSMUSG00000042535 Gtpbp1 AL022987|AW045683|C85212|GP-1|Gtpbp - 15|15 E1 GTP binding protein 1 protein-coding 74440 Mm.233181 NM_028941 ENSMUSG00000034390 Cmip 4933407C03Rik|5830471E12Rik|AI314065|AI464126 - 8|8 E1 c-Maf inducing protein protein-coding 105243675 XR_882294 Gm39506 - - X A3.3|X predicted gene, 39506 ncRNA 100417858 Gm18867 - - 3|3 D eukaryotic translation initiation factor 5 pseudogene pseudo 20005 Mm.300271 NM_011292 ENSMUSG00000047215 Rpl9 - - 5|5 C3.1 ribosomal protein L9 protein-coding 101861 Mm.27383 NM_027256 ENSMUSG00000025133 Ints4 2610034N24Rik|AA692684|AW493223 - 7|7 E1 integrator complex subunit 4 protein-coding 258033 Olfr189-ps1 MOR113-6P - 16|16 C1.3 olfactory receptor 189, pseudogene 1 pseudo 100124446 NR_030570 ENSMUSG00000077941 Mir466h Mirn466h - 2 A1|2 microRNA 466h ncRNA 12948 crsp - - - cryptorchidism with white spotting, deletion region unknown 19435 Rb(1.10)10Bnr Rb10Bnr - - Robertsonian translocation, Chr 1 and 10, Universitat Bonn/Rhein 10 other 102637231 Gm34100 - - 3|3 predicted gene, 34100 ncRNA 102640854 XR_373378 Gm36822 - - 1 B|1 predicted gene, 36822 ncRNA 100040052 XM_001474178 Gm2573 - - 15 A1|15 predicted gene 2573 protein-coding 100039953 Mm.300663 NM_001195255 ENSMUSG00000095276 Gfy Gm2515|Gm581|Goofy - 7 B3|7 golgi-associated olfactory signaling regulator protein-coding 234663 Mm.289583 NM_001013380 ENSMUSG00000035770 Dync1li2 AA409702|C920003I06|Dncli2|Dnclic2|LIC2 - 8 D3|8 53.04 cM dynein, cytoplasmic 1 light intermediate chain 2 protein-coding 114343 Adip3 - - 7 51.6 cM adiposity 3 unknown 257832 Olfr1092-ps1 EG257832|GA_x5J8B7W3Y5M-123838-124302|Gm5025 - 2 D|2 olfactory receptor 1092, pseudogene 1 pseudo 57256 Mm.386785 NM_020487 ENSMUSG00000024116 Prss21 1700023E12Rik|TESP5|mT4|testisin - 17 A3.3|17 12.11 cM protease, serine 21 protein-coding 68024 Mm.261676 NM_023422 ENSMUSG00000018102 Hist1h2bc 2610022J01Rik|H2bfs|R74621 - 13|13 A3.1 histone cluster 1, H2bc protein-coding 66413 Mm.27591 NM_025550 ENSMUSG00000021737 Psmd6 2400006A19Rik - 14|14 A1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 protein-coding 13264 Del(10)69H Del69H - - deletion, Chr 10, Harwell 69 other 102637928 XR_869470 Gm34617 - - 6 F3|6 predicted gene, 34617 ncRNA 100035098 Manln3 - - 3 32.25 cM mandible length 3 unknown 56040 Mm.3158 NM_018853 ENSMUSG00000007892 Rplp1 2410042H16Rik|Arpp1|C430017H15Rik - 9|9 B ribosomal protein, large, P1 protein-coding 105242410 XM_017318848 LOC105242410 - - Y C2 X-linked lymphocyte-regulated protein PM1-like protein-coding 105245829 XR_874866 Gm41219 - - 14 D3|14 predicted gene, 41219 ncRNA 76166 Mm.271064 NM_001081174 ENSMUSG00000073733 Rsg1 6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo - 4|4 D3 REM2 and RAB-like small GTPase 1 protein-coding 70054 Mm.307198 NM_027298 ENSMUSG00000044362 Ccdc89 1700019B01Rik|AU022100|BOIP - 7|7 E1 coiled-coil domain containing 89 protein-coding 15567 Mm.300318 NM_010484 ENSMUSG00000020838 Slc6a4 5-HTT|AI323329|Htt|Sert - 11 B5|11 46.18 cM solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 protein-coding 52370 D6Ertd456e - - 6 30.89 cM DNA segment, Chr 6, ERATO Doi 456, expressed unknown 100534383 LOC100534383 - - 4|4 D1 multiple inositol polyphosphate histidine phosphatase 1 pseudogene pseudo 100503069 Gm19535 - - 10|10 35.02 cM predicted gene, 19535 pseudo 19197 Mm.86487 NM_008954 ENSMUSG00000002664 Pspn PSP - 17|17 D persephin protein-coding 110810 Snrp2a Rnu2pa - - U2 small nuclear ribonucleoprotein polypeptide 2A protein-coding 102636778 Gm33755 - - 19 B|19 predicted gene, 33755 pseudo 109225 Mm.491251 NM_027836 ENSMUSG00000024672 Ms4a7 9130422I10Rik|A430103C15Rik|CD20l4|CFFMA - 19|19 A membrane-spanning 4-domains, subfamily A, member 7 protein-coding 102638825 XR_867353 Gm35299 - - 3 E1|3 predicted gene, 35299 ncRNA 106894 Mm.22574 NM_134134 ENSMUSG00000024622 Hmgxb3 2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194 - 18|18 E1 HMG box domain containing 3 protein-coding 19114 Mm.153999 NM_011168 ENSMUSG00000046899 Prl7a2 Ghd18|PLP-F|Prlpf - 13 A3.1|13 12.58 cM prolactin family 7, subfamily a, member 2 protein-coding 102633091 Gm31001 - - 14|14 predicted gene, 31001 ncRNA 72508 Mm.394280 NM_028259 ENSMUSG00000020516 Rps6kb1 2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|P70S6K1|S6K|S6K1|p70/85s6k|p70s6k - 11|11 C ribosomal protein S6 kinase, polypeptide 1 protein-coding 102634054 XR_001782719 Gm31733 - - 19 A|19 predicted gene, 31733 ncRNA 360049 D17Jcs72 - - - DNA segment, Chr 17, John C. Schimenti 72 unknown 258097 Mm.365444 NM_001011831 ENSMUSG00000054526 Olfr1500 MOR212-4P - 19|19 A olfactory receptor 1500 protein-coding 12647 Mm.442817 NM_009891 ENSMUSG00000021919 Chat B230380D24Rik|CHOACTase - 14 B|14 19.4 cM choline acetyltransferase protein-coding 62861 D11Mit295 - - 11 11.94 cM DNA segment, Chr 11, Massachusetts Institute of Technology 295 unknown 23794 Mm.112933 NM_011782 ENSMUSG00000022894 Adamts5 9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2 - 16 C3.3|16 48.34 cM a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2) protein-coding 106780811 Obox4-ps5 - - 7 A1|7 oocyte specific homeobox 4, pseudogene 5 pseudo 435951 Mm.480280 NM_001166714 ENSMUSG00000094001 Vmn1r122 EG435951|Gm5729 - 7|7 A3 vomeronasal 1 receptor 122 protein-coding 100628600 NR_039593 ENSMUSG00000093167 Mir5131 mmu-mir-5131|mu-mir-5131 - 14 C1|14 23.33 cM microRNA 5131 ncRNA 667650 Gm8744 EG667650 - 6|6 A1 eukaryotic translation initiation factor 5B pseudogene pseudo 667528 Gm13641 - - 2|2 C2 predicted gene 13641 pseudo 100040691 Gm11914 - - 4|4 A3 high-mobility group nucleosome binding domain 5 pseudogene pseudo 233812 Mm.276479 NM_001164580 ENSMUSG00000046096 Mosmo Atthog - 7|7 F2 modulator of smoothened protein-coding 63026 D16Mit195 - - 16 27.65 cM DNA Segment, Chr 16, Massachusetts Institute of Technology 195 unknown 194588 Mm.389816 NM_001038676 ENSMUSG00000055942 Obox7 EG194588|Gm4745 - 7 A1|7 oocyte specific homeobox 7 protein-coding 66046 Mm.28058 NM_025316 ENSMUSG00000027673 Ndufb5 0610007D05Rik|AU015782|CI-SGDH|SGDH - 3|3 A3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 protein-coding 16211 Mm.251013 NM_008379 ENSMUSG00000001440 Kpnb1 AA409963|IPOB|Impnb - 11|11 D karyopherin (importin) beta 1 protein-coding 27206 Mm.482319 NM_013724 ENSMUSG00000052854 Nrk AA407323|AA409510|AI225895|AV168563|AW538185|Nesk - X F1|X 61.15 cM Nik related kinase protein-coding 414095 Mm.166361 NR_040375 ENSMUSG00000093606 B130034C11Rik - - 16 C3.3|16 RIKEN cDNA B130034C11 gene ncRNA 71867 Mm.179181 NR_045891 ENSMUSG00000100625 1700016G22Rik - - 13|13 A1 RIKEN cDNA 1700016G22 gene ncRNA 75787 Mm.30842 NR_045980 ENSMUSG00000097693 4930471M09Rik 4930427C17Rik - 6|6 D1 RIKEN cDNA 4930471M09 gene ncRNA 117208 l9Rl7 nl-1 - - lethal, Chr 9, Russell 7 protein-coding 243420 Mm.333124 Igkv1-135 Gm4964|bd2 - 6 C1|6 immunoglobulin kappa variable 1-135 other 606717 Gm6076 EG606717|Ppia-ps14_723.1 - 14|14 D1 peptidylprolyl isomerase A pseudogene 14_723.1 pseudo 546249 Gm5929 EG546249 - 14|14 B predicted gene 5929 pseudo 105245706 XR_874477 Gm41114 - - 14 A3|14 predicted gene, 41114 ncRNA 108475 Ms95 MMS95 - - minisatellites detected by probe MMS95 other 215031 Mm.87237 NM_153786 ENSMUSG00000049641 Vgll2 C130057C21Rik|VITO-1|Vito1|vgl-2 - 10|10 B3 vestigial like family member 2 protein-coding 73378 Mm.438970 1700060L04Rik - - 6|6 F2 RIKEN cDNA 1700060L04 gene ncRNA 57080 Mm.332735 NM_020331 ENSMUSG00000023079 Gtf2ird1 1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320 - 5 G2|5 74.55 cM general transcription factor II I repeat domain-containing 1 protein-coding 20277 Mm.7709 NM_011325 ENSMUSG00000030873 Scnn1b - - 7 F2|7 65.07 cM sodium channel, nonvoltage-gated 1 beta protein-coding 74911 4930485E13Rik - - - RIKEN cDNA 4930485E13 gene protein-coding 268481 Mm.133193 NM_172946 ENSMUSG00000035849 Krt222 6330509G02Rik - 11|11 D keratin 222 protein-coding 14260 Mm.4938 NM_010230 ENSMUSG00000044042 Fmn1 Fmn|formin-1|ld - 2 E4|2 57.3 cM formin 1 protein-coding 54648 Mm.63342 NM_207202 ENSMUSG00000031150 Ccdc120 AA030924|DXImx50e|Jm11|Sfc25 - X A1.1|X 3.48 cM coiled-coil domain containing 120 protein-coding 100035336 Elyms1 - - - ENU induced lymphoma susceptibility 1 unknown 105242517 Gm38719 - - 1|1 predicted gene, 38719 ncRNA 100034792 Hdlq10 - - 4 28.57 cM HDL QTL 10 unknown 791394 Mm.122399 XR_001785358 Gm9878 - - 6 F1|6 predicted gene 9878 unknown 57170 Mm.285167 NM_020329 ENSMUSG00000026856 Dolpp1 0610011H20Rik|AB030189|LSFR2 - 2|2 B dolichyl pyrophosphate phosphatase 1 protein-coding 102633017 Gm21744 - - Y|Y predicted gene, 21744 pseudo 100035808 Tgct4 - - - testicular germ cell tumor 4 unknown 21662 tda2 Tda-2 - - testis-determining autosomal 2 unknown 107197 Mm.381181 NM_001160356 ENSMUSG00000071654 Uqcc3 AI462493|Cbp4 - 19|19 A ubiquinol-cytochrome c reductase complex assembly factor 3 protein-coding 239038 Mm.134302 NM_173418 ENSMUSG00000043418 Lrit2 A930010E21Rik|Lrrc22 - 14|14 B leucine-rich repeat, immunoglobulin-like and transmembrane domains 2 protein-coding 73431 Mm.351426 NM_028539 1700052K11Rik AI840954 - 11|11 E1 RIKEN cDNA 1700052K11 gene ncRNA 218244 Gm272 - - 13|13 A5 predicted gene 272 protein-coding 100529076 NR_037682 Snord42a MBII-292|U42A - 11 46.74 cM|11 B5 small nucleolar RNA, C/D box 42A snoRNA 107425 Gcna Gcna1 - - germ cell nuclear acidic protein protein-coding 76125 5830487K18Rik - - 16|16 RIKEN cDNA 5830487K18 gene protein-coding 104298 Exnm - - - neuromuscular excitability protein-coding 108411 Xmmv15 Env-15|Xmmv-15 - - xenotropic-MCF leukemia virus 15 other 100503565 Mm.98256 NR_040528 Gm9926 - - 18|18 E1 predicted gene 9926 ncRNA 116603 D7Tem3 - - - DNA segment, Chr 7, Tempel 3 unknown 105246091 XR_875987 Gm41435 - - 16 B1|16 predicted gene, 41435 ncRNA 140904 Mm.40875 NM_021371 ENSMUSG00000060371 Caln1 9630012C17Rik|Cabp8|MNCb-0849 - 5|5 G1.3-G2 calneuron 1 protein-coding 107823 Mm.19892 NM_175231 ENSMUSG00000057406 Nsd2 5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090 - 5|5 B2 nuclear receptor binding SET domain protein 2 protein-coding 243168 Mm.284944 NM_198030 ENSMUSG00000034528 Hsd17b13 AI047820|PAN1B-like|Pan1b - 5|5 E5 hydroxysteroid (17-beta) dehydrogenase 13 protein-coding 102639030 Gm35443 - - 1 D|1 predicted gene, 35443 pseudo 105242826 Mm.478409 XR_869626 2610017A05Rik Gm44143 - 6|6 G3 RIKEN cDNA 2610017A05 gene ncRNA 359883 DXMgc31 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 31 unknown 68067 Mm.40828 NM_026543 ENSMUSG00000020381 Mrnip 2900016G09Rik|3010026O09Rik|AI851514|AW475975 - 11|11 B1.3 MRN complex interacting protein protein-coding 100042198 Mm.25191 NR_045078 ENSMUSG00000105402 Gm3716 Gm1683 - 5|5 C3.1 predicted gene 3716 ncRNA 433287 Mm.383632 NM_001161816 Gm15455 AA692849 - 1 B|1 predicted gene 15455 protein-coding 223827 Mm.22819 NM_001033275 ENSMUSG00000036197 Gxylt1 Glt8d3|Gm1228|Gm87 - 15|15 E3 glucoside xylosyltransferase 1 protein-coding 15901 Mm.444 NM_010495 ENSMUSG00000042745 Id1 AI323524|D2Wsu140e|Idb1|bHLHb24 - 2 H1|2 75.41 cM inhibitor of DNA binding 1 protein-coding 76754 2310039F13Rik - - 6|6 RIKEN cDNA 2310039F13 gene protein-coding 116858 Bdt4 - - 7 26.29 cM bone density traits 4 unknown 171273 Mm.377225 NM_134239 ENSMUSG00000115791 Vmn1r217 V1rh14 - 13|13 A3.1 vomeronasal 1 receptor 217 protein-coding 105244920 XR_872821 Gm40442 - - 12 C3|12 predicted gene, 40442 ncRNA 102639072 Gm35474 - - 17|17 predicted gene, 35474 ncRNA 19368 Mm.458004 NM_009016 Raet1a RAE-1alpha|Rae1alpha|Raet1 - 10|10 A3 retinoic acid early transcript 1, alpha protein-coding 73881 Mm.489042 4930430M16Rik - - 6 B3 RIKEN cDNA 4930430M16 gene protein-coding 102632131 Gm30285 - - 10 A3|10 predicted gene, 30285 pseudo 627583 Gm12664 - - 11|11 A2 predicted gene 12664 pseudo 100379606 Mm.34441 Gm15247 - - - predicted gene 15247 protein-coding 102467338 n-TLtaa1 n-Tl23 - - nuclear encoded tRNA leucine 1 (anticodon TAA) tRNA 106736473 Mm.491359 LOC106736473 - - - antisense transcript from mouse inducible nitric oxide synthase (iNOS) gene ncRNA 668070 Gm8959 EG668070 - 9|9 A5.3 ribosomal protein L9 pseudogene pseudo 76649 Mm.420532 NR_040536 ENSMUSG00000100593 1700119H24Rik - - 16|16 B3 RIKEN cDNA 1700119H24 gene ncRNA 171244 Mm.377200 NM_134210 ENSMUSG00000115027 Vmn1r81 V1rg9 - 7|7 A1 vomeronasal 1 receptor 81 protein-coding 105247150 XR_881375 Gm42302 - - 4 C3|4 predicted gene, 42302 ncRNA 27744 D2Dcr23 - - - DNA segment, Chr 2, Derry C. Roopenian 23 unknown 271788 Gm13531 - - 2|2 C1.1 predicted gene 13531 pseudo 627889 Gm6807 EG627889 - 19|19 C3 ribosomal protein L6 pseudogene pseudo 108168869 XR_001783831 Gm46803 - - 3 C|3 predicted gene, 46803 ncRNA 27907 D16Ium58 - - - DNA segment, Chr 16, Indiana University Medical 58 unknown 105243371 Gm39316 - - 9|9 predicted gene, 39316 ncRNA 52275 D7Ertd316e - - 7 21.37 cM DNA segment, Chr 7, ERATO Doi 316, expressed unknown 108168294 XR_001781958 Gm46555 - - 16 C4|16 predicted gene, 46555 ncRNA 78832 Mm.259026 NM_030197 ENSMUSG00000033417 Cacul1 2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik - 19|19 D3 CDK2 associated, cullin domain 1 protein-coding 381144 Mm.399333 4930541O19Rik Gm1613|Gm544 - 17|17 A3.3 RIKEN cDNA 4930541O19 gene protein-coding 105244055 XR_865862 Gm39737 - - 1 H6|1 predicted gene, 39737 ncRNA 70950 Mm.235716 NM_027616 ENSMUSG00000024306 Ccdc178 4921528I01Rik - 18|18 A2 coiled coil domain containing 178 protein-coding 56462 Mm.3224 NM_019880 ENSMUSG00000024012 Mtch1 2310034O17Rik|AI255158|AU018396|C77849|PSAP - 17|17 A3.3 mitochondrial carrier 1 protein-coding 100041555 Rpl10-ps5 Gm3405 - 8 C5|8 ribosomal protein L10, pseudogene 5 pseudo 109121377 LOC109121377 - - - Fgf4 3' enhancer biological-region 102638477 XR_375060 Gm35030 - - 2 G1|2 predicted gene, 35030 ncRNA 66131 Mm.196219 NM_025372 ENSMUSG00000032397 Tipin 1110005A05Rik|1110018P21Rik - 9 C|9 34.6 cM timeless interacting protein protein-coding 636474 Gm17752 - - 1|1 E2.1 CCR4-NOT transcription complex, subunit 1 pseudogene pseudo 102631896 XR_373742 Gm30115 - - 1 H4|1 predicted gene, 30115 ncRNA 780803 Ighv3-1 Gm16610 - 12|12 F1 immunoglobulin heavy variable 3-1 other 100503676 Mm.437155 NR_103491 ENSMUSG00000003812 Gm38426 - - 8 C3|8 predicted gene, 38426 ncRNA 102635769 XR_387971 ENSMUSG00000110652 Gm33023 - - 8 D3|8 predicted gene, 33023 ncRNA 102990 AU022409 - - - expressed sequence AU022409 unknown 73994 Mm.148858 XR_105727 ENSMUSG00000115676 4930449C09Rik - - 15|15 D1 RIKEN cDNA 4930449C09 gene ncRNA 624083 XM_006504642 Gm15753 - - 5 G2|5 predicted gene 15753 pseudo 78204 Mm.445942 4930563A19Rik - - 17|17 RIKEN cDNA 4930563A19 gene protein-coding 12001 awg - - - abnormal wobbly gait unknown 665669 Gm7742 EG665669 - 17|17 A3.2 sperm motility kinase Y pseudogene pseudo 56013 Mm.342665 NM_018873 ENSMUSG00000038453 Srcin1 P140|SNIP|mKIAA1684|p140Cap - 11|11 D SRC kinase signaling inhibitor 1 protein-coding 632268 LOC632268 - - - serine/arginine-rich splicing factor 10-like pseudo 102638182 Gm34807 - - 4|4 predicted gene, 34807 ncRNA 102640959 XR_001781615 Gm36899 - - 15 B1|15 predicted gene, 36899 ncRNA 60972 D12Mit6 - - 12 44.05 cM DNA segment, Chr 12, Massachusetts Institute of Technology 6 unknown 112163584 AA617000 - - - expressed sequence AA617000 protein-coding 102640353 XR_385724 Gm36437 - - 17 E1.3|17 predicted gene, 36437 ncRNA 14261 Mm.976 NM_010231 ENSMUSG00000040181 Fmo1 - - 1 H2.1|1 70.34 cM flavin containing monooxygenase 1 protein-coding 102193 Mm.240076 NM_133967 ENSMUSG00000031823 Zdhhc7 AL024087|Gramp2 - 8|8 E1 zinc finger, DHHC domain containing 7 protein-coding 105245258 XR_871947 Gm40736 - - 10 C2|10 predicted gene, 40736 ncRNA 111209 Hspa9-ps2 Hsc74-ps2 - - heat shock protein 9, pseudogene 2 pseudo 100039623 Mm.306954 Gm15429 - - 1|1 H2.1 anterior pharynx defective 1a homolog pseudogene pseudo 436479 NM_001040460 Trav9-2 Gm16979 - 14|14 C2 T cell receptor alpha variable 9-2 other 105243658 XR_878054 Gm39493 - - X A1.1|X predicted gene, 39493 ncRNA 100628630 NR_039585 ENSMUSG00000093269 Mir5124a Mir5124|mmu-mir-5124|mmu-mir-5124a|mu-mir-5124 - 13 A3.3|13 20.13 cM microRNA 5124a ncRNA 105245054 XR_872954 Gm40562 - - 12 E|12 predicted gene, 40562 ncRNA 215193 Mm.173758 NM_145415 ENSMUSG00000016181 Diexf AA408296|AW045375|Def - 1|1 H6 digestive organ expansion factor homolog (zebrafish) protein-coding 622486 NM_001310703 ENSMUSG00000075598 Smok3c EG622486 - 5|5 G2 sperm motility kinase 3C protein-coding 259161 Mm.377867 NM_001011533 ENSMUSG00000073909 Olfr688 MOR40-16|MOR40-5|Olfr688-ps1 - 7|7 E3 olfactory receptor 688 protein-coding 60876 D6Mit98 - - 6 34.89 cM DNA segment, Chr 6, Massachusetts Institute of Technology 98 unknown 100416280 Gm17212 - - 3|3 E1 ribosomal protein L17 pseudogene pseudo 114083 Axtofd4 - - - anxiety-open field defecation 4 unknown 100502624 Mm.382825 NR_040361 ENSMUSG00000085862 Gm13483 - - 2 C1.1|2 28.92 cM predicted gene 13483 ncRNA 111921 Iapls3-44 - - - intracisternal A particle, lymphocyte specific, probe 3-44 other 216036 Gm4796 EG216036 - 10|10 B5.1 predicted gene 4796 pseudo 27517 B479N4T - - - DNA segment, B479N4T unknown 19647 Mm.4480 NM_011247 ENSMUSG00000030779 Rbbp6 4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT - 7|7 F2 retinoblastoma binding protein 6, ubiquitin ligase protein-coding 71313 Mm.85046 NM_027759 ENSMUSG00000027344 Fsip1 1700012M13Rik|4933432K11Rik - 2|2 E5 fibrous sheath-interacting protein 1 protein-coding 102638992 XR_383483 Gm35419 - - 14 D1|14 predicted gene, 35419 ncRNA 102635093 Gm32516 - - 10|10 predicted gene, 32516 protein-coding 100043659 Gm4575 - - 6 D1|6 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 62709 D17Mit153 - - 17 40.78 cM DNA segment, Chr 17, Massachusetts Institute of Technology 153 unknown 14200 Mm.6799 NM_010212 ENSMUSG00000008136 Fhl2 FHL-2|SLIM-3|SLIM3 - 1|1 B four and a half LIM domains 2 protein-coding 111452 Krt1c Krt-2|Krt2 - - keratin 1 complex other 108167906 Mm.438576 NR_155283 Ccdc42os 4930535C22Rik - 11|11 B3 coiled-coil domain containing 42, opposite strand ncRNA 27772 38B16F - - - DNA segment, 38B16F (Research Genetics) unknown 666546 Gm13163 - - 4|4 E1 predicted gene 13163 pseudo 320999 9530019H20Rik - - 8|8 B3.3 RIKEN cDNA 9530019H20 gene unknown 105244801 XR_868597 Gm16599 - - 5 G2|5 75.97 cM predicted gene, 16599 ncRNA 19641 Rb(X.2)2Ad Rb2Ad - - Robertsonian translocation, Chr X and 2, Adler 2 other 100042038 Gm13740 - - 2|2 D predicted gene 13740 pseudo 67552 Mm.484027 NM_026230 H2afy3 4933432H23Rik - 15|15 D1 H2A histone family, member Y3 pseudo 545648 Mm.368246 NM_001161608 ENSMUSG00000096591 Gm13272 - - 4 C4|4 predicted gene 13272 protein-coding 628117 Gm6842 EG628117 - 7|7 A1 zinc finger protein 772 pseudogene pseudo 12748 Mm.288098 NM_007712 ENSMUSG00000068917 Clk2 AU041688 - 3|3 F1 CDC-like kinase 2 protein-coding 102641430 Gm38558 - - 13|13 predicted gene, 38558 ncRNA 28200 Mm.27427 NM_030686 ENSMUSG00000022210 Dhrs4 AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR - 14 C3|14 28.19 cM dehydrogenase/reductase (SDR family) member 4 protein-coding 381695 Mm.246934 NM_201369 ENSMUSG00000029655 N4bp2l2 2700092H06Rik|Gm38758|zag1 - 5|5 G3 NEDD4 binding protein 2-like 2 protein-coding 93934 D16Jhu74 587H2.SP6 - - DNA segment, Chr 16, Johns Hopkins University 74 unknown 22420 Mm.268282 NM_009526 ENSMUSG00000033227 Wnt6 AA409270|Wnt-6 - 1|1 C4 wingless-type MMTV integration site family, member 6 protein-coding 27668 D11Moh21 - - 11 59.3 cM DNA segment, Chr 11, KL Mohlke 21 unknown 100416137 Gm17935 - - 3|3 A3 calponin 3, acidic pseudogene pseudo 100862431 LOC100862431 - - - H-2 class I histocompatibility antigen, D-D alpha chain-like pseudo 732520 Gt(pU21)138Imeg Ayu21-138|GtAyu21-138 - - gene trap 138, Institute of Molecular Embryology and Genetics unknown 111688 Ms15-3 - - - minisatellite 15-3 detected by probe 33.15 other 329636 Mm.411863 XR_867251 ENSMUSG00000102544 Gm5103 A630062H14 - 3 C|3 predicted gene 5103 ncRNA 51925 D2Ertd640e - - - DNA segment, Chr 2, ERATO Doi 640, expressed unknown 100418165 Gm19047 - - 12|12 C2 non-POU-domain-containing, octamer binding protein pseudogene pseudo 492930 Tshp4 QTL-TSH3.1 - 3 32.25 cM tooth shape 4 unknown 109982 Lamr1l P40-1 - - laminin receptor 1-like protein-coding 102639936 Gm36133 - - Y|Y tRNA methyltransferase 112 homolog pseudo 100504542 Gm20277 - - 13 A1|13 2.02 cM transcription initiation factor IIA subunit 2-like pseudo 102633938 XR_384773 Gm38456 - - 16 B1|16 predicted gene, 38456 ncRNA 105244722 Gm40280 - - 5|5 predicted gene, 40280 ncRNA 109792 Coc - - - coralliform cataract unknown 108241 Dppa5-ps5 Esg1-ps5|esg-1 - - developmental pluripotency associated 5, pseudogene 5 pseudo 57274 Mm.441697 NM_020516 ENSMUSG00000032988 Slc16a8 Mct3 - 15|15 E1 solute carrier family 16 (monocarboxylic acid transporters), member 8 protein-coding 102634350 LOC102634350 - - - uncharacterized LOC102634350 ncRNA 109279973 LOC109279973 Mm621 - - VISTA enhancer mm621 biological-region 102633805 NR_125899 ENSMUSG00000097752 Gm26688 Tfap2a-as1 - 13 A3.3|13 predicted gene, 26688 ncRNA 102640671 XR_379188 Gm36685 - - 9 A3|9 predicted gene, 36685 ncRNA 105243058 XR_869952 Gm39090 Gm44514 - 7 F3|7 predicted gene, 39090 ncRNA 242702 Mm.318639 NM_001085509 ENSMUSG00000037139 Myom3 8430427K15Rik|Gm434 - 4|4 D3 myomesin family, member 3 protein-coding 232798 Mm.22831 NM_172736 ENSMUSG00000035545 Leng8 AW049671 - 7|7 A1 leukocyte receptor cluster (LRC) member 8 protein-coding 100049592 Fmtq9 - - - femur mechanical trait QTL 9 unknown 18430 Mm.333310 NM_001081147 ENSMUSG00000049112 Oxtr OTR - 6|6 E3 oxytocin receptor protein-coding 640694 Gm7307 EG640694 - 16|16 C3.3 ferritin light chain 1 pseudogene pseudo 630845 Mm.439643 NM_001039128 ENSMUSG00000078280 Tas2r122 T2R22|Tas2r22|mGR22 - 6|6 G1 taste receptor, type 2, member 122 protein-coding 100043766 Mm.447040 NR_024097 Gm14057 - - 2 F1|2 Ppp1r14c pseudogene pseudo 229302 Mm.26618 NM_145539 ENSMUSG00000027801 Tm4sf4 Iltmp - 3|3 D transmembrane 4 superfamily member 4 protein-coding 102637500 XR_375050 Gm34292 - - 2 G1|2 predicted gene, 34292 ncRNA 102634904 XR_388230 LOC102634904 - - 8 E2 uncharacterized LOC102634904 ncRNA 114683 Dbsty2 - - 5 47.29 cM diabesity 2 unknown 102637195 Gm15565 - - 9|9 71.57 cM predicted gene 15565 pseudo 381113 Mm.329216 NM_001033443 ENSMUSG00000033966 Cdkl4 AU067824|Gm942 - 17|17 E3 cyclin-dependent kinase-like 4 protein-coding 78178 Mm.452749 NR_130996 ENSMUSG00000045095 4930511A08Rik - - 6|6 D1 RIKEN cDNA 4930511A08 gene ncRNA 18354 Mm.222843 NM_010997 ENSMUSG00000059397 Olfr54 F3|MOR126-1 - 11|11 B1.3 olfactory receptor 54 protein-coding 215919 Mm.294313 NM_001177783 ENSMUSG00000094311 Rfpl4b 100040915|Gm3037|Gm62 - 10|10 B1 ret finger protein-like 4B protein-coding 625174 Gm6560 EG625174|Gm1816 - 5|5 A3 pyruvate kinase, muscle pseudogene pseudo 74202 Mm.490327 NM_133754 ENSMUSG00000006219 Fblim1 2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s) - 4|4 D3 filamin binding LIM protein 1 protein-coding 66277 Mm.38343 NM_023184 ENSMUSG00000030087 Klf15 1810013I09Rik|AV048136|AW494632|CKLF|KKLF - 6|6 D1 Kruppel-like factor 15 protein-coding 116907 Ritls - - 16 10.09 cM radiation induced thymic lymphoma susceptibility unknown 246168 L1Md-Gf251 GF251 - - L1 repeat, Gf subfamily, member251 other 102640965 XR_384854 Gm36903 - - 16 B4|16 predicted gene, 36903 ncRNA 117576 DXMgc83 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 83 unknown 105244280 XR_866694 Gm39920 - - 2 F1|2 predicted gene, 39920 ncRNA 102634341 XR_382670 Gm31946 - - 13 C1|13 predicted gene, 31946 ncRNA 272411 Mm.98333 NM_001081167 ENSMUSG00000074004 B3gnt6 BC039789|Core-3|Core3 - 7|7 E1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase) protein-coding 108168906 XM_017319867 Gm43707 - - 3 H2|3 predicted gene 43707 protein-coding 23972 Mm.203916 NM_011864 ENSMUSG00000024899 Papss2 1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm - 19 C1|19 27.46 cM 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 102634485 XR_386361 Gm32058 - - 18 E3|18 predicted gene, 32058 ncRNA 30931 Mm.154994 NM_144884 ENSMUSG00000026849 Tor1a DQ2|Dyt1|torsinA - 2|2 B torsin family 1, member A (torsin A) protein-coding 277898 Mm.269823 NM_177787 ENSMUSG00000044378 Slc15a5 9830102E05Rik - 6|6 G1 solute carrier family 15, member 5 protein-coding 27785 Mm.475102 D5Buc30e - - 5 38.44 cM DNA segment, Chr 5, Bucan 30 expressed unknown 108491826 LOC108491826 PGE|VMHE - - Nr5a1 enhancer region in intron 6 biological-region 100036404 Bmd36 Bmd29 - - bone mineral density 36 unknown 66719 Mm.59310 NM_025726 4921522P10Rik - - 8|8 A1.1 RIKEN cDNA 4921522P10 gene unknown 105244165 XR_879841 Gm39823 - - 11 B1.3|11 predicted gene, 39823 ncRNA 100417943 Gm11254 - - 4|4 C3 predicted gene 11254 pseudo 100039862 Gm11833 - - 4|4 A1 eukaryotic translation initiation factor pseudogene pseudo 68949 Mm.391959 NM_001081005 Zfas1 1500012F01Rik|Zfos1 - 2|2 H3 zinc finger, NFX1-type containing 1, antisense RNA 1 ncRNA 384052 Gm12957 - - 4|4 D2.1 predicted gene 12957 pseudo 16826 Mm.25785 NM_010698 ENSMUSG00000039706 Ldb2 AI035351|AW146358|CLIM1|CLP-36|Ldb3 - 5|5 B3 LIM domain binding 2 protein-coding 102639317 XR_379292 Gm35657 - - 9 A5.1|9 predicted gene, 35657 ncRNA 105247335 LOC105247335 - - - uncharacterized LOC105247335 ncRNA 67149 Mm.423029 NM_025998 ENSMUSG00000078532 Nkain1 2610200G18Rik|2810426C15Rik - 4|4 D2.2 Na+/K+ transporting ATPase interacting 1 protein-coding 100418407 Gm19190 - - X|X A4 N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits pseudogene pseudo 75797 4930435N07Rik - - 8|8 RIKEN cDNA 4930435N07 gene protein-coding 67489 Mm.197568 NM_026193 ENSMUSG00000032952 Ap4b1 1810038H16Rik|AV004952|Ap4b4 - 3|3 F2.2 adaptor-related protein complex AP-4, beta 1 protein-coding 55988 Mm.206949 NM_018875 ENSMUSG00000046032 Snx12 2610001F05Rik|AW045757|SDP8 - X|X D sorting nexin 12 protein-coding 111444 Emv56 Emv-56 - - endogenous ecotropic MuLV 56 other 62969 D15Mit226 - - - DNA Segment, Chr 15, Massachusetts Institute of Technology 226 unknown 98046 R74919 - - - expressed sequence R74919 unknown 100503867 Rps10-ps3 Gm11806 - 4 A1|4 2.22 cM ribosomal protein S10, pseudogene 3 pseudo 102641749 XR_869159 Gm38573 - - 6 C1|6 predicted gene, 38573 ncRNA 100113412 Trav13-4-dv7 Gm13934|Tradv13-4|Trav13-4/dv7 - 14|14 C2 T cell receptor alpha variable 13-4-DV7 other 56590 301l2Sp6 - - - DNA segment, 301l12Sp6 unknown 105402 BB120430 - - - expressed sequence BB120430 unknown 27413 Mm.439855 NM_021022 ENSMUSG00000027048 Abcb11 ABC16|Bsep|Lith1|PFIC2|PGY4|SPGP - 2 C2|2 39.69 cM ATP-binding cassette, sub-family B (MDR/TAP), member 11 protein-coding 73271 Mm.251322 1700029K24Rik - - 11|11 RIKEN cDNA 1700029K24 gene protein-coding 16520 Mm.39759 NM_008427 ENSMUSG00000044216 Kcnj4 IRK3|Kcnf2|MB-IRK3 - 15 E1|15 37.74 cM potassium inwardly-rectifying channel, subfamily J, member 4 protein-coding 100015211 Mm.32839 Notumos 4732444A12Rik - 11 E2|11 notum palmitoleoyl-protein carboxylesterase, opposite strand unknown 102467566 n-TKctt14 n-Tk14 - 17 A3.3|17 nuclear encoded tRNA lysine 14 (anticodon CTT) tRNA 216119 Mm.344778 NM_172550 ENSMUSG00000033126 Ybey 1110068N23Rik|A130042E20Rik|C21orf57|ORF57|ORF66 - 10|10 C1 ybeY metallopeptidase protein-coding 666838 Gm8321 EG666838 - 1|1 E2.3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 72012 Mm.349174 NR_037960 ENSMUSG00000097048 1600020E01Rik - - 6|6 D1 RIKEN cDNA 1600020E01 gene ncRNA 73586 Mm.398283 1700101C01Rik - - 2|2 RIKEN cDNA 1700101C01 gene unknown 100862162 Gm21530 - - Y|Y predicted gene, 21530 protein-coding 723958 NR_029722 ENSMUSG00000065488 Mir196a-2 Mirn196a-2|mir-196a-2 - 15|15 F3 microRNA 196a-2 ncRNA 102466849 NR_106159 ENSMUSG00000098280 Mir7687 Gm27573|mmu-mir-7687 - 8|8 E1 microRNA 7687 ncRNA 666752 Mm.153425 XR_140622 Gm8273 EG666752 - 4|4 A1 predicted gene 8273 unknown 100503794 Mm.360519 NR_045093 ENSMUSG00000053749 Gm9920 - - 15|15 D1 predicted gene 9920 ncRNA 73517 1700074L02Rik - - 18|18 RIKEN cDNA 1700074L02 gene protein-coding 112019 Dob4 - - 15 17.76 cM dietary obesity 4 unknown 102637684 Mm.338906 NR_152791 ENSMUSG00000093732 Gm20609 - - 10 B5.3|10 36.87 cM predicted gene 20609 ncRNA 61680 D6Mit282 - - 6 35.13 cM DNA segment, Chr 6, Massachusetts Institute of Technology 282 unknown 216505 Mm.390323 NM_178149 ENSMUSG00000034614 Pik3ip1 1500004A08Rik|5830455E04Rik|Crkd|Hgfl - 11|11 A1 phosphoinositide-3-kinase interacting protein 1 protein-coding 217664 Mm.206642 NM_146035 ENSMUSG00000043998 Mgat2 AA407964|CDGS2|GLCNACTII|GNT-II|GNT2 - 12|12 C2 mannoside acetylglucosaminyltransferase 2 protein-coding 105243666 XR_878072 Gm39497 - - X A1.2|X predicted gene, 39497 ncRNA 13601 Mm.3433 NM_007899 ENSMUSG00000028108 Ecm1 AI663821|p85 - 3 F2.1|3 40.91 cM extracellular matrix protein 1 protein-coding 639868 Gm7281 - - 1|1 C5 predicted gene 7281 protein-coding 112270 C10bw4 - - 13 38.78 cM castaneus 10 week body weight 4 unknown 71307 Mm.376184 NR_029439 ENSMUSG00000038408 1700018A04Rik 4930551G20Rik|4933439J11Rik - 13|13 A3.2 RIKEN cDNA 1700018A04 gene ncRNA 73526 Mm.389608 NM_028561 ENSMUSG00000048703 Speer4b 1700081O22Rik|SPEER-4B - 5|5 B1 spermatogenesis associated glutamate (E)-rich protein 4B protein-coding 100416181 Gm14172 - - 2|2 H1 predicted gene 14172 pseudo 15485 Mm.188939 NM_010475 ENSMUSG00000019301 Hsd17b1 17HSDB1|17beta-HSD|E2DH|Hsd17ba - 11 D|11 64.17 cM hydroxysteroid (17-beta) dehydrogenase 1 protein-coding 106049964 Sfpe2/sbe1 - - - sonic hedgehog brain enhancer region in intron 2 biological-region 105244434 XR_867198 Gm40042 - - 3 C|3 predicted gene, 40042 ncRNA 52743 D17Wsu1e - - - DNA segment, Chr 17, Wayne State University-1, expressed unknown 100039522 Gm2288 - - X A3.3|X predicted gene 2288 pseudo 68936 Mm.21698 NM_138743 ENSMUSG00000051989 Smim11 1190017O12Rik|C21orf51|Fam165b|Smim11a - 16|16 C4 small integral membrane protein 11 protein-coding 71735 Mm.425292 NM_027891 ENSMUSG00000029703 Lrwd1 1200011O22Rik|AU042569|AW548074|Orca - 5|5 G2 leucine-rich repeats and WD repeat domain containing 1 protein-coding 108573 Iap5rc20 - - - intracisternal A-type particle, U5 region, SINE repeat c-20 other 100035752 Pcyts5 - - 17 28.8 cM plasmacytoma susceptibility 5 unknown 100151698 Gm17799 - - 16|16 A3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105243774 Mm.102276 Gm39559 - - 12|12 predicted gene, 39559 ncRNA 74838 Mm.275281 NM_053089 ENSMUSG00000063273 Naa15 5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1 - 3|3 C N(alpha)-acetyltransferase 15, NatA auxiliary subunit protein-coding 102641678 LOC102641678 - - - ATP synthase subunit O, mitochondrial protein-coding 62422 D13Mit215 - - 13 3.72 cM DNA segment, Chr 13, Massachusetts Institute of Technology 215 unknown 66967 Mm.337691 NM_001039644 ENSMUSG00000043019 Edem3 2310050N11Rik - 1|1 G1-G2 ER degradation enhancer, mannosidase alpha-like 3 protein-coding 20431 Mm.16756 NM_021882 ENSMUSG00000025359 Pmel D10H12S53E|D12S53Eh|Pmel17|Si|Silv|gp100|gp87 - 10 D3|10 77.13 cM premelanosome protein protein-coding 666486 Gm8128 EG666486 - 16|16 B1 tryptophan rich basic protein pseudogene pseudo 100036395 Vmmt7 - - - vertebral morphology and mechanical traits 7 unknown 97214 C77190 - - - expressed sequence C77190 unknown 622311 Rhox2-ps EG622311|Gm6310 - X|X A3.3 reproductive homeobox 2, pseudogene pseudo 60967 DXMit205 - - X 7.14 cM DNA Segment, Chr X Massachusetts Institute of Technology 205 unknown 27499 B40B5S - - - DNA segment, B40B5S unknown 100502952 Gm9775 - - 9|9 47.24 cM transcription elongation factor B polypeptide 1-like pseudo 14173 Mm.473689 NM_008006 ENSMUSG00000037225 Fgf2 Fgf-2|Fgfb|bFGF - 3 B|3 18.41 cM fibroblast growth factor 2 protein-coding 319980 Mm.387016 A430027H14Rik - - 1|1 RIKEN cDNA A430027H14 gene unknown 52326 Mm.261182 D1Ertd408e - - 1 38.54 cM DNA segment, Chr 1, ERATO Doi 408, expressed unknown 108167731 XR_001779472 Gm46161 - - 1 F|1 predicted gene, 46161 ncRNA 21888 Mm.103638 NM_011600 ENSMUSG00000024642 Tle4 5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4 - 19 A|19 9.11 cM transducin-like enhancer of split 4 protein-coding 245050 Mm.71062 NM_177743 ENSMUSG00000038233 Fam198a C730027P07Rik - 9|9 F4 family with sequence similarity 198, member A protein-coding 60771 D2Mit89 - - 2 31.66 cM DNA segment, Chr 2, Massachusetts Institute of Technology 89 unknown 101056121 XM_011251065 Gm21835 - - Y B|Y predicted gene, 21835 protein-coding 108167618 XR_001778863 Gm46087 - - 1 B|1 predicted gene, 46087 ncRNA 105243867 XR_865206 Gm39597 - - 1 A3|1 predicted gene, 39597 ncRNA 72608 Mm.384359 NR_045905 2700069I18Rik - - 3|3 A1 RIKEN cDNA 2700069I18 gene ncRNA 106007492 LOC106007492 NRE|P alpha|ele4 - - enhancer in intron 4 of Pax6 biological-region 777780 Ighv5-6 Gm16891 - 12|12 F1 immunoglobulin heavy variable 5-6 other 105246085 XR_875949 Gm41432 - - 16 A3|16 predicted gene, 41432 ncRNA 102637876 XR_867344 Gm34576 - - 3 E1|3 predicted gene, 34576 ncRNA 259109 Mm.377851 NM_147105 ENSMUSG00000044292 Olfr978 MOR223-3 - 9|9 A5.1 olfactory receptor 978 protein-coding 105244050 NR_151534 Gm15509 - - 1 H5|1 90.36 cM predicted gene 15509 ncRNA 105242592 XR_868771 Gm38762 - - 6 A1|6 predicted gene, 38762 ncRNA 102638884 XR_373452 Gm38513 - - 1 C2|1 predicted gene, 38513 ncRNA 100041299 Gm3261 - - 14|14 A1 predicted gene 3261 pseudo 13711 Mm.20888 NM_010125 ENSMUSG00000027186 Elf5 ESE-2|ESE-5|ESE-5. - 2|2 E2 E74-like factor 5 protein-coding 107515 Mm.277351 NM_172671 ENSMUSG00000050199 Lgr4 9130225G07|A330106J01Rik|A930009A08Rik|Gpr48 - 2|2 E3 leucine-rich repeat-containing G protein-coupled receptor 4 protein-coding 613124 Ugt1a7a-ps A6P' - - UDP glucuronosyltransferase 1 family, polypeptide A7A, pseudogene pseudo 257887 Mm.377285 NM_001005227 ENSMUSG00000075115 Olfr1200 MOR225-12 - 2|2 E1 olfactory receptor 1200 protein-coding 109457 Pas9 - - - pulmonary adenoma susceptibility 9 unknown 111360 Mmv16 Mmv-16 - - MCF endogenous virus 16 other 668929 Mm.473683 NM_001114677 ENSMUSG00000074704 Rad21l Gm14160|MeiRAD21L|Rad21l1 - 2 G3|2 RAD21-like (S. pombe) protein-coding 12739 Mm.158662 NM_009902 ENSMUSG00000070473 Cldn3 AI182374|Cpetr2|mRVP1 - 5 G2|5 74.93 cM claudin 3 protein-coding 18570 Mm.24254 NM_011051 ENSMUSG00000021576 Pdcd6 AV299538|Alg2|MA-3|PS2|alg-2 - 13|13 C1 programmed cell death 6 protein-coding 85184 D17Mit59 - - 17 11.4 cM DNA segment, Chr 17, Massachusetts Institute of Technology 59 unknown 20321 Mm.66293 NM_009146 ENSMUSG00000033386 Frrs1 AI131732|Sdfr2 - 3|3 G1 ferric-chelate reductase 1 protein-coding 105244891 XR_872736 Gm40419 - - 12 B3|12 predicted gene, 40419 ncRNA 22129 Mm.213408 NM_009441 ENSMUSG00000040785 Ttc3 2610202A04Rik|AA409221|D16Ium21|D16Ium21e|TPRD|mKIAA4119 - 16 C4|16 55.18 cM tetratricopeptide repeat domain 3 protein-coding 111557 Pmv53 Pmv-53 - - polytropic murine leukemia virus 53 other 100042426 Gm3838 - - 12|12 A1.1 transcription factor 20 pseudogene pseudo 17728 TrnD - - - tRNA tRNA 321017 Mm.311575 NR_110486 ENSMUSG00000112489 9230116L04Rik - - 12|12 C3 RIKEN cDNA 9230116L04 gene ncRNA 102638238 XR_388136 Gm34847 - - 8 E1|8 predicted gene, 34847 ncRNA 76383 Mm.440761 NM_029588 ENSMUSG00000100200 H2al1m 1700012L04Rik|H2al1 - X|X A1.1 H2A histone family member L1M protein-coding 102636392 XR_878349 Gm33470 - - 1 D|1 predicted gene, 33470 ncRNA 100503355 Mm.484410 NM_001204908 ENSMUSG00000066797 Zfp648 Gm10178|Gm203 - 1|1 G3 zinc finger protein 648 protein-coding 102637407 Gm34224 - - 6 G1|6 predicted gene, 34224 pseudo 102633774 XR_378130 Gm31521 - - 6 G3|6 predicted gene, 31521 ncRNA 77058 Mm.478493 NM_029859 ENSMUSG00000026940 Ccdc183 4921530D09Rik|Cccd183|Kiaa1984 - 2|2 A3 coiled-coil domain containing 183 protein-coding 383739 Gm13904 - - 2|2 E3 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 pseudogene pseudo 102642924 Gm38644 - - 11|11 predicted gene, 38644 ncRNA 243499 Mm.483425 NM_178731 ENSMUSG00000052581 Lrrtm4 7530419J18Rik|A230052N11 - 6|6 C3 leucine rich repeat transmembrane neuronal 4 protein-coding 105244562 XR_867662 Gm40155 Gm43087 - 3 G3|3 predicted gene, 40155 ncRNA 66921 Mm.51049 NM_025845 ENSMUSG00000027881 Prpf38b 1110021E09Rik|AU018955 - 3|3 F3 PRP38 pre-mRNA processing factor 38 (yeast) domain containing B protein-coding 102639465 XR_384326 Gm35772 - - 15 E3|15 predicted gene, 35772 ncRNA 170711 Mm.156872 NM_130880 ENSMUSG00000033510 Otud7a AJ430384|Otud7 - 7|7 C OTU domain containing 7A protein-coding 71003 Mm.328839 NM_027644 ENSMUSG00000024114 Prss41 4931440B09Rik|Tessp-1|Tessp1 - 17 A3.3|17 12.09 cM protease, serine 41 protein-coding 100505355 Gm15798 - - 16|16 11.73 cM predicted gene 15798 protein-coding 61470 D7Mit103 - - 7 71.55 cM DNA segment, Chr 7, Massachusetts Institute of Technology 103 unknown 100294504 Mm.478765 Gm10188 - - - predicted gene 10188 unknown 102639500 XR_373354 Gm35801 - - 1 B|1 predicted gene, 35801 ncRNA 109882 Ea10 Ea-10 - - erythrocyte antigen 10 protein-coding 97343 T25656 - - - expressed sequence T25656 unknown 114544 Dice1 - - 16 6.54 cM determination of interleukin 4 commitment 1 unknown 105245553 XR_873655 Gm40997 - - 13 C1|13 predicted gene, 40997 ncRNA 102465215 NR_105827 ENSMUSG00000098619 Mir6401 Gm27442|mmu-mir-6401 - 7|7 F4 microRNA 6401 ncRNA 75937 Mm.159627 4930594M17Rik - - 18|18 E3 RIKEN cDNA 4930594M17 gene protein-coding 61864 D1Mit365 - - 1 46.24 cM DNA segment, Chr 1, Massachusetts Institute of Technology 365 unknown 16271 In(2)58Rk In58Rk - - inversion, Chr 2, Roderick 58 other 111990 Insq2 - - - insulin QTL 2 unknown 101055993 Gm29138 - - 1 C1.2|1 predicted gene 29138 pseudo 12462 Mm.256034 NM_009836 ENSMUSG00000001416 Cct3 AL024092|Cctg|Tcp1-rs3|TriC-P5 - 3 F1|3 38.79 cM chaperonin containing Tcp1, subunit 3 (gamma) protein-coding 208595 Mm.129815 NM_001042670 ENSMUSG00000053178 Mterf1b Gm9897 - 5 A1|5 mitochondrial transcription termination factor 1b protein-coding 105759 AA675007 - - - expressed sequence AA675007 unknown 319388 Mm.358961 NM_176904 Irx3os D230002A01Rik - 8|8 C5 iroquois homeobox 3, opposite strand unknown 105247100 XR_881143 Gm42259 - - 4 A3|4 predicted gene, 42259 ncRNA 102637724 XR_375709 Gm34462 - - 3 E1|3 predicted gene, 34462 ncRNA 111571 Xmv37 Xmv-37 - - xenotropic murine leukemia virus 37 other 102640815 Mm.399266 XR_389419 ENSMUSG00000106255 Gm36793 - - 5 E4|5 predicted gene, 36793 ncRNA 102636825 XR_377301 Gm33788 - - 6 A1|6 predicted gene, 33788 ncRNA 105244796 Gm40344 - - 5|5 predicted gene, 40344 ncRNA 100041480 Mm.455632 NR_045710 ENSMUSG00000049230 Gm9833 - - 3|3 A1 myelin basic protein expression factor 2, repressor pseudogene pseudo 19409 Rare7 - - - retinoic acid response element 7 other 102633533 Gm31337 - - 13|13 predicted gene, 31337 ncRNA 100416806 Gm18267 - - 8|8 A4 testis expressed gene 24 pseudogene pseudo 72324 Mm.39617 NM_028199 ENSMUSG00000017417 Plxdc1 2410003I07Rik|AI848450|Tem7 - 11|11 D plexin domain containing 1 protein-coding 102640897 XR_865947 Gm36853 - - 2 A1|2 predicted gene, 36853 ncRNA 78124 Mm.342895 NM_030047 ENSMUSG00000056223 Spata31 4930458L03Rik|Aep1|Fam75a|Spata31a|Vad1.3 - 13|13 B3 spermatogenesis associated 31 protein-coding 100502682 Gm19320 - - 13 C2|13 41.72 cM low molecular weight phosphotyrosine protein phosphatase-like pseudo 93856 D14Jor1 - - - DNA segment, Chr 14, Barbara Jordan 1 unknown 100418253 Cyp2d67-ps Gm19101 - 15|15 E1 cytochrome P450, family 2, subfamily d, polypeptide 67, pseudogene pseudo 102637953 XR_375712 Gm38503 - - 3 E1|3 predicted gene, 38503 ncRNA 100861784 XM_006502570 LOC100861784 - - 3 E3 ubiquitin-conjugating enzyme E2 L3-like protein-coding 21425 Mm.2305 NM_011549 ENSMUSG00000023990 Tfeb Tcfeb|bHLHe35 - 17 C|17 23.99 cM transcription factor EB protein-coding 21238 T(6;7)17Ad T17Ad - - reciprocal translocation, Chr 6 and 7, Adler 17 other 100416126 Gm17929 - - 1|1 C1.3 spermine synthase pseudogene pseudo 102637808 XM_006517799 ENSMUSG00000096330 LOC102637808 - - 13 D1 low-density lipoprotein receptor class A domain-containing protein 1-like protein-coding 71921 Mm.440654 2310058N22Rik - - 12|12 RIKEN cDNA 2310058N22 gene protein-coding 108168064 XR_001780860 LOC108168064 - - 13 A1 uncharacterized LOC108168064 ncRNA 73722 Mm.279773 NM_028625 ENSMUSG00000068890 Lce1a2 1110004E04Rik|Sprrl2 - 3|3 F1 late cornified envelope 1A2 protein-coding 110877 Mm.19301 NM_153054 ENSMUSG00000036330 Slc18a1 4832416I10Rik|Vat1|Vmat1 - 8 B3.3|8 33.88 cM solute carrier family 18 (vesicular monoamine), member 1 protein-coding 102636524 XR_385673 Gm33566 - - 17 D|17 predicted gene, 33566 ncRNA 493101 Tgl1 Tg-1 - - triglyceride level 1 unknown 109280052 LOC109280052 Mm447 - - VISTA enhancer mm447 biological-region 264064 Mm.260576 NM_153599 ENSMUSG00000029635 Cdk8 - - 5|5 G3 cyclin-dependent kinase 8 protein-coding 69854 Mm.57859 NR_130986 ENSMUSG00000085551 1810063I02Rik - - 11|11 B1.3 RIKEN cDNA 1810063I02 gene ncRNA 110523 Tcrd-J - - - T cell receptor delta, joining region other 100043067 Mm.480285 NM_001166841 ENSMUSG00000094700 Vmn1r158 EG667554|Gm16455 - 7|7 A3 vomeronasal 1 receptor 158 protein-coding 100416533 Gm18152 - - 15|15 D1 ribosomal protein L19 pseudogene pseudo 102640961 XR_384345 Gm36901 - - 15 E3|15 predicted gene, 36901 ncRNA 102640089 XR_387904 Gm36243 Gm45661 - 8 C4|8 predicted gene, 36243 ncRNA 100417699 Gm18769 - - 16|16 B1 zinc finger, CCHC domain containing 6 pseudogene pseudo 72961 Mm.255631 NM_182993 ENSMUSG00000070570 Slc17a7 2900052E22Rik|AI851913|Vglut1 - 7|7 B3 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 protein-coding 77027 4432414F05Rik - - 13|13 RIKEN cDNA 4432414F05 gene protein-coding 108167639 Gm46103 - - 9 A1|9 eukaryotic translation initiation factor 1 pseudogene pseudo 102642321 Mm.461639 XR_873690 Gm38604 - - 13 C1|13 predicted gene, 38604 ncRNA 60737 D1Mit46 - - 1 39.16 cM DNA segment, Chr 1, Massachusetts Institute of Technology 46 unknown 51904 D3Ertd508e - - - DNA segment, Chr 3, ERATO Doi 508, expressed unknown 112145 Afw9 - - - abdominal fat weight QTL 9 unknown 105246684 XR_878442 Gm41932 - - 1 E2.2|1 predicted gene, 41932 ncRNA 105242965 Gm39028 - - 7|7 predicted gene, 39028 ncRNA 68458 Mm.2343 NM_026731 ENSMUSG00000037166 Ppp1r14a 1110001M11Rik|Cpi17 - 7|7 B1 protein phosphatase 1, regulatory (inhibitor) subunit 14A protein-coding 217166 Mm.390397 NM_145434 ENSMUSG00000020889 Nr1d1 A530070C09Rik|R75201 - 11|11 D nuclear receptor subfamily 1, group D, member 1 protein-coding 100039748 Gm10020 - - 15|15 C ribosomal protein L15 pseudogene pseudo 216161 Mm.262102 NM_183426 ENSMUSG00000035673 Sbno2 BC019206|F730040C21|Sno|Stno - 10|10 C1 strawberry notch 2 protein-coding 105246632 Mm.435572 XR_878120 Gm14661 - - X|X A6 predicted gene 14661 ncRNA 105445 Mm.378591 NM_134074 ENSMUSG00000025558 Dock9 AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058 - 14 E5|14 65.28 cM dedicator of cytokinesis 9 protein-coding 667498 Gm8668 EG667498 - 15|15 B3.1 nucleus accumbens-associated protein 1 pseudogene pseudo 100036227 Hrl - - - herpes resistance locus unknown 72238 Mm.120650 NM_028162 ENSMUSG00000023923 Tbc1d5 1600014N05Rik - 17|17 C TBC1 domain family, member 5 protein-coding 17433 Mm.432562 NM_008614 ENSMUSG00000032517 Mobp AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645 - 9 F4|9 71.41 cM myelin-associated oligodendrocytic basic protein protein-coding 102465764 NR_106117 ENSMUSG00000104773 Mir7657 mmu-mir-7657 - 3|3 G1 microRNA 7657 ncRNA 105244029 XR_865788 Gm37406 - - 1 H4|1 predicted gene, 37406 ncRNA 258853 Mm.377721 NM_146854 ENSMUSG00000049010 Olfr982 MOR223-4 - 9|9 A5.1 olfactory receptor 982 protein-coding 61234 D1Mit257 - - 1 48.14 cM DNA segment, Chr 1, Massachusetts Institute of Technology 257 unknown 666954 Vmn1r-ps22 EG666954|Gm8377 - 6|6 B3 vomeronasal 1 receptor, pseudogene 22 pseudo 17734 TrnK - - - tRNA tRNA 545578 Gm5858 EG545578 - 3|3 H3 predicted gene 5858 pseudo 210135 Mm.32254 NM_172483 ENSMUSG00000057101 Zfp180 2310040I01Rik|AI852378|D130011P11|HHZ168 - 7|7 A3 zinc finger protein 180 protein-coding 66709 Mm.390504 NR_152102 4921507G05Rik - - 12|12 F1 RIKEN cDNA 4921507G05 gene ncRNA 102635495 NR_153791 Gm32817 Gm45563 - 16 A1|16 predicted gene, 32817 ncRNA 102631507 XR_390425 Gm29829 - - 4 A2|4 predicted gene, 29829 ncRNA 72284 Mm.273049 NM_028184 ENSMUSG00000031072 Oraov1 2210010N10Rik|TAOS1 - 7|7 F5 oral cancer overexpressed 1 protein-coding 665949 Gm12821 - - 4|4 D1 predicted gene 12821 pseudo 109904 Mm.93796 NM_133197 ENSMUSG00000031139 Mcf2 B230117G22Rik|Dbl|Mcf-2 - X A6|X 33.5 cM mcf.2 transforming sequence protein-coding 74907 4930483C01Rik - - 13|13 RIKEN cDNA 4930483C01 gene protein-coding 381798 Mm.444785 NM_198668 ENSMUSG00000034063 4930590J08Rik Gm1071 - 6|6 D1 RIKEN cDNA 4930590J08 gene protein-coding 100417562 Gm18690 - - 6|6 G1 taste receptor, type 2, member 117 pseudogene pseudo 408193 Mm.469910 NM_001163191 ENSMUSG00000051582 Otud6a EG408193|Hshin6 - X C3|X OTU domain containing 6A protein-coding 105246418 XR_877347 Gm41708 - - 18 B3|18 predicted gene, 41708 ncRNA 108353826 Sox2-srr18 - - - SRR18 enhancer downstream of Sox2 biological-region 105245275 XR_872005 Gm40752 - - 10 D1|10 predicted gene, 40752 ncRNA 75601 Mm.245980 XR_391539 ENSMUSG00000108587 1810049I09Rik Gm45214 - 7|7 C RIKEN cDNA 1810049I09 gene ncRNA 76905 Mm.348025 NM_029796 ENSMUSG00000037095 Lrg1 1300008B03Rik|2310031E04Rik|Lrg|Lrhg - 17 29.17 cM|17 D leucine-rich alpha-2-glycoprotein 1 protein-coding 16450 Mm.186146 NM_010588 ENSMUSG00000002799 Jag2 D12Ggc2e|Serh|mJagged2-1|sm - 12 F1|12 61.37 cM jagged 2 protein-coding 105242804 XR_001785398 Gm38914 - - 6 G1|6 predicted gene, 38914 ncRNA 320272 Mm.446274 NR_038007 ENSMUSG00000103577 9330162B11Rik - - 1|1 H5 RIKEN cDNA 9330162B11 gene ncRNA 76113 Mm.41236 NM_080420 ENSMUSG00000009356 Lpo 5830499B15Rik - 11|11 C lactoperoxidase protein-coding 105243732 XR_878282 Gm39543 - - X F3|X predicted gene, 39543 ncRNA 56200 Mm.413275 NM_019553 ENSMUSG00000020075 Ddx21 AI255159|AL022742|D10Ertd645e|D10Wsu42e - 10 B4|10 32.43 cM DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 protein-coding 259062 Mm.377816 NM_147060 ENSMUSG00000056782 Olfr667 MOR34-11|MOR34-2 - 7|7 E3 olfactory receptor 667 protein-coding 110050 Tsp9 - - - tumor suppressor region 9 protein-coding 235130 Mm.65867 NM_001024139 ENSMUSG00000033453 Adamts15 - - 9|9 A4 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15 protein-coding 320429 Mm.270754 NM_001164659 ENSMUSG00000062296 Trank1 A230061D21Rik|C030048J01Rik|Gm187|Lba1 - 9|9 F3 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 78381 2310047N11Rik - - 1|1 RIKEN cDNA 2310047N11 gene protein-coding 102640255 Mm.404662 XR_379904 Gm36367 - - 9 F3|9 predicted gene, 36367 ncRNA 668536 Rpl31-ps18 EG668536|Gm9228 - 19|19 D2 ribosomal protein L31, pseudogene 18 pseudo 19476 Rb(11.14)1Dn Rb1Dn - - Robertsonian translocation, Chr 11 and 14, Davisson 1 other 102637366 Mm.121460 NM_001015506 ENSMUSG00000058246 Gm10037 EG328280|Rslcan24 - 13|13 B3 predicted gene 10037 protein-coding 105246449 XR_877447 Gm41738 - - 18 D3|18 predicted gene, 41738 ncRNA 71988 Mm.249280 NM_028039 ENSMUSG00000022034 Esco2 2410004I17Rik|D030072L07Rik - 14|14 D1 establishment of sister chromatid cohesion N-acetyltransferase 2 protein-coding 102632062 XR_375650 Gm30235 - - 3 C|3 predicted gene, 30235 ncRNA 66494 Mm.439805 NM_025596 ENSMUSG00000021486 Prelid1 2610524G07Rik|Preli - 13|13 B1 PRELI domain containing 1 protein-coding 668148 Gm9003 EG668148 - X C3|X M phase phosphoprotein 6 pseudogene pseudo 70478 Mm.274650 NM_027436 ENSMUSG00000021993 Mipep 5730405E07Rik|MIP - 14|14 D1 mitochondrial intermediate peptidase protein-coding 105245444 XR_873043 Gm40898 - - 12 F1|12 predicted gene, 40898 ncRNA 404366 Olfr626-ps1 MOR177-11P|MOR4-6_p|Olfr261-ps1 - 7|7 E3 olfactory receptor 626, pseudogene 1 pseudo 100217415 Mm.453537 NR_028519 ENSMUSG00000089281 Scarna6 MBI-46 - 1 D|1 small Cajal body-specific RNA 6 ncRNA 16377 Is(17;In2)1Gso Is1Gso - - insertion, Chr 17 piece into inverted Chr 2, Generoso 1 other 621100 NM_001110339 Rpl27-ps3 EG621100|Gm6199 - 18|18 A1 ribosomal protein L27, pseudogene 3 pseudo 69189 Mm.175176 NM_026985 ENSMUSG00000013974 Mcemp1 1810033B17Rik - 8 A1.1|8 1.92 cM mast cell expressed membrane protein 1 protein-coding 54643 DXImx45e Sfc24 - - DNA segment, Chr X, Immunex 45, expressed unknown 108168301 Gm46562 - - 16 C3.3|16 H/ACA ribonucleoprotein complex subunit 3 pseudogene pseudo 23844 Mm.33483 NM_017474 ENSMUSG00000028255 Clca1 Clca2|Clca3|gob-5|gob5 - 3 H2|3 69.26 cM chloride channel accessory 1 protein-coding 77400 9530006O14Rik - - 9|9 RIKEN cDNA 9530006O14 gene protein-coding 383787 Mm.35758 NM_001081971 ENSMUSG00000078137 Ankrd63 Gm1337 - 2|2 E5 ankyrin repeat domain 63 protein-coding 102635134 XR_871953 Gm32551 - - 10 C2|10 predicted gene, 32551 ncRNA 620639 XM_017318922 ENSMUSG00000094855 LOC620639 - - 5|5 C3.3 uncharacterized LOC620639 protein-coding 60691 D1Mit3 - - 1 6.27 cM DNA segment, Chr 1, Massachusetts Institute of Technology 3 unknown 359919 DXMgc72 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 72 unknown 319822 Mm.340377 NM_177009 ENSMUSG00000018809 Smyd4 G430029E23Rik - 11|11 B5 SET and MYND domain containing 4 protein-coding 673222 Rpl31-ps6 Gm15748 - 5|5 F ribosomal protein L31, pseudogene 6 pseudo 546832 Mup-ps21 Gm12555 - 4|4 B3 major urinary protein, pseudogene 21 pseudo 102634882 XR_379233 Gm32359 - - 9 A4|9 predicted gene, 32359 ncRNA 100047646 XR_001782992 Gm17782 - - 17|17 18.97 cM predicted gene, 17782 unknown 103112 AA589531 - - - expressed sequence AA589531 unknown 245297 Mm.388847 NM_001018086 Gm4983 EG245297 - 12 A1.2|12 predicted gene 4983 unknown 102466821 NR_106089 ENSMUSG00000104840 Mir7230 mmu-mir-7230 - 5|5 F microRNA 7230 ncRNA 667988 XR_386969 Gm8914 EG667988 - X|X C2 predicted gene 8914 unknown 102635721 Mm.489004 Gm26651 - - 13|13 predicted gene, 26651 ncRNA 102635608 Scgb2b29-ps Abpbg29-ps - 7 B1|7 secretoglobin, family 2B, member 29, pseudogene pseudo 65952 DXCch5 - - - DNA segment, Chr X, Celltech Chiroscience 5 unknown 211660 Mm.244046 NM_026493 ENSMUSG00000056763 Cspp1 2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3 - 1|1 A2 centrosome and spindle pole associated protein 1 protein-coding 215436 Mm.256753 NM_029875 ENSMUSG00000060181 Slc35e3 9330166G04Rik|AI481200 - 10|10 D2 solute carrier family 35, member E3 protein-coding 102633712 XR_380111 Gm31471 - - 10 A1|10 predicted gene, 31471 ncRNA 105244597 XR_867798 Gm40187 - - 3 H4|3 predicted gene, 40187 ncRNA 102634529 XM_017318911 LOC102634529 - - - PRAME family member 8-like protein-coding 66948 Mm.289244 NM_025862 ENSMUSG00000031969 Acad8 2310016C19Rik|AI786953 - 9|9 A4 acyl-Coenzyme A dehydrogenase family, member 8 protein-coding 105245695 XR_874399 Gm41107 - - 14 A3|14 predicted gene, 41107 ncRNA 100038975 Gm1992 - - 1 A1|1 predicted gene 1992 protein-coding 52784 D11Bwg0388e - - - DNA segment, Chr 11, Brigham & Women's Genetics 0388 expressed unknown 102632900 XR_381385 Gm30855 - - 12 A2|12 predicted gene, 30855 ncRNA 102638850 LOC102638850 - - 16 B3 40S ribosomal protein S21 pseudogene pseudo 140742 Mm.139418 NM_001013370 ENSMUSG00000038332 Sesn1 1110002G11Rik|AU044290|Pa26|Sest1 - 10 B2|10 22.77 cM sestrin 1 protein-coding 100504160 Gm20094 - - 2|2 75.41 cM predicted gene, 20094 protein-coding 102637343 XR_374271 Gm34178 - - 2 B|2 predicted gene, 34178 ncRNA 12490 Mm.29798 NM_133654 ENSMUSG00000016494 Cd34 AU040960 - 1 H6|1 98.38 cM CD34 antigen protein-coding 102637910 XR_001779305 Gm34605 - - 9 F1|9 predicted gene, 34605 ncRNA 100417660 Gm18745 - - 9|9 D zinc finger, BED domain containing 4 pseudogene pseudo 76710 Mm.165495 NR_126488 ENSMUSG00000039563 2210406O10Rik - - 5|5 B3 RIKEN cDNA 2210406O10 gene ncRNA 19167 Mm.296338 NM_011184 ENSMUSG00000060073 Psma3 Lmpc8 - 12|12 C2 proteasome (prosome, macropain) subunit, alpha type 3 protein-coding 100038568 Gm10483 - - X A3-A5|X predicted gene 10483 unknown 70430 Mm.260209 NM_178337 ENSMUSG00000039233 Tbce 2610206D02Rik|C530005D02Rik|pmn - 13 A1|13 5.29 cM tubulin-specific chaperone E protein-coding 107794 Tel9p - - - telomeric sequence, Chr 9, centromere end protein-coding 102640042 Mm.329879 XR_386757 LOC102640042 - - 19 C3 uncharacterized LOC102640042 ncRNA 70409 2310066F23Rik - - 19|19 RIKEN cDNA 2310066F23 gene protein-coding 16053 Mm.378115 Igh-V15 VH15 - 12 F2|12 immunoglobulin heavy chain (V15 family) other 73233 Mm.311219 NM_001199048 ENSMUSG00000071267 Zfp942 3110048L19Rik - 17|17 A3.3 zinc finger protein 942 protein-coding 258509 NM_146516 ENSMUSG00000057890 Olfr1375 MOR126-2|Olfr1375-ps1 - 11|11 B1.3 olfactory receptor 1375 protein-coding 383603 Gm5264 EG383603 - 1|1 D predicted gene 5264 pseudo 105245891 XR_875040 Gm41272 - - 15 A1|15 predicted gene, 41272 ncRNA 77453 Mm.331772 XR_868015 ENSMUSG00000085256 Dmrta2os 3010003L10Rik - 4|4 C7 doublesex and mab-3 related transcription factor like family A2, opposite strand ncRNA 193403 Gm11392 Gm11395 - 13|13 A3.3 serine (or cysteine) peptidase inhibitor, clade B pseudogene pseudo 102634908 Gm32381 - - 6|6 predicted gene, 32381 pseudo 213573 Mm.386851 NM_001025103 ENSMUSG00000048200 Cracr2b 6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a - 7|7 F5 calcium release activated channel regulator 2B protein-coding 100462934 Gm19250 - - 7 E1|7 53.88 cM thymosin, beta 10 pseudogene pseudo 18854 Mm.392123 NM_008884 ENSMUSG00000036986 Pml 1200009E24Rik|AI661194|Trim19 - 9 B|9 31.63 cM promyelocytic leukemia protein-coding 102811 AW743293 - - - expressed sequence AW743293 unknown 117229 Mm.389950 NM_054103 ENSMUSG00000031027 Stk33 4921505G21Rik|AW061264 - 7 E3|7 57.21 cM serine/threonine kinase 33 protein-coding 68192 Mm.34212 NM_026609 ENSMUSG00000031513 Leprotl1 1110067H13Rik|1520402O14Rik|AI854296 - 8|8 A4 leptin receptor overlapping transcript-like 1 protein-coding 104324 Hrs2 Hrs-2 - - mouse minor satellite DNA 2 other 257993 Olfr956-ps1 MOR171-40P - 9|9 A5.1 olfactory receptor 956, pseudogene 1 pseudo 105246713 Gm41957 - - 1|1 predicted gene, 41957 ncRNA 108168090 LOC108168090 - - 13 B3 prothymosin alpha pseudogene pseudo 100036380 Elda2 - - 13 62.07 cM ethanol induced low dose activation 2 unknown 100049593 Fmtq11 - - - femur mechanical trait QTL 11 unknown 668512 Gm9214 EG668512 - 17|17 C DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo 75420 Mm.275981 NM_029279 ENSMUSG00000035139 Secisbp2 2210413N07Rik|2810012K13Rik|SBP2 - 13|13 A5 SECIS binding protein 2 protein-coding 111912 Iapls3-54 - - - intracisternal A particle, lymphocyte specific, probe 3-54 other 102633236 XR_374348 Gm13481 - - 2 B|2 28.06 cM predicted gene 13481 ncRNA 109940 Hma - - - HPRT mobility alteration unknown 12499 Mm.10211 NM_007647 ENSMUSG00000021236 Entpd5 AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase - 12 D1|12 39.18 cM ectonucleoside triphosphate diphosphohydrolase 5 protein-coding 68214 Mm.63791 NM_026619 ENSMUSG00000025069 Gsto2 1700020F09Rik|4930425C18Rik|GSTO 2-2 - 19|19 D1 glutathione S-transferase omega 2 protein-coding 57429 Mm.6562 NM_020564 ENSMUSG00000000739 Sult5a1 Sult-x1|Sultx1 - 8|8 E1 sulfotransferase family 5A, member 1 protein-coding 100502607 Gm19280 - - 9|9 50.68 cM predicted gene, 19280 pseudo 109286570 LOC109286570 - - - T (brachyury) promoter biological-region 668490 Gm9200 EG668490|Gm9201 - X|X D zinc finger protein 277 pseudogene pseudo 208768 Mm.272625 NM_145943 ENSMUSG00000038806 Sde2 - - 1|1 H4 SDE2 telomere maintenance homolog (S. pombe) protein-coding 108168135 n-TQctg10 Trnaq-cug|n-Tq10 - 13 A3.1|13 nuclear encoded tRNA glutamine 10 (anticodon CTG) tRNA 108169083 XR_001785022 Gm46928 - - 5 G3|5 predicted gene, 46928 ncRNA 638833 Gm7251 EG638833 - 13|13 A5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 75353 4930553I21Rik - - 10|10 RIKEN cDNA 4930553I21 gene protein-coding 105246296 XR_876875 Gm41600 - - 17 C|17 predicted gene, 41600 ncRNA 102640562 Mm.404175 NR_137201 ENSMUSG00000085218 BB218582 - - 2|2 E3 expressed sequence BB218582 ncRNA 666969 Gm8390 EG666969 - 18|18 B3 high mobility group box 2 pseudogene pseudo 209837 Mm.6055 NM_172479 ENSMUSG00000031170 Slc38a5 C81234|E330031E14|JM24|SN2 - X|X A1.1 solute carrier family 38, member 5 protein-coding 110591 Iph1 - - - inability to phosphorylate hexokinase 1 protein-coding 66730 Mm.31773 NR_033782 ENSMUSG00000085704 4921531C22Rik - - 2|2 H4 RIKEN cDNA 4921531C22 gene ncRNA 60948 DXMit49 - - - DNA segment, Chr X, Massachusetts Institute of Technology 49 unknown 66638 Mm.227281 5730458M16Rik - - 2|2 RIKEN cDNA 5730458M16 gene protein-coding 320454 Mm.184522 NM_177162 ENSMUSG00000079451 Tmprss11g 9930032O22Rik|Desc4 - 5|5 E1 transmembrane protease, serine 11g protein-coding 319244 9430091N11Rik - - 15|15 RIKEN cDNA 9430091N11 gene protein-coding 102637935 XR_373698 Gm34624 - - 1 H2.3|1 predicted gene, 34624 ncRNA 23876 Mm.288381 NM_011812 ENSMUSG00000021186 Fbln5 A55|DANCE|EVEC - 12|12 E fibulin 5 protein-coding 73193 3110043J17Rik - - 10|10 RIKEN cDNA 3110043J17 gene protein-coding 433273 Mm.304088 NR_004447 ENSMUSG00000097711 Gm5523 EG433273 - 1|1 A3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 66822 Mm.37950 NM_025785 ENSMUSG00000038365 Fbxo25 9130015I06Rik|AI649137|Fbx25 - 8|8 A1.1 F-box protein 25 protein-coding 53701 D9Citb3 D9Ag3 - - DNA segment, Chr 9, California Institute of Technology, Biology Department 3 unknown 102635247 XR_001780687 Gm32635 - - 12 F1|12 predicted gene, 32635 ncRNA 60879 D7Mit43 - - 7 73.19 cM DNA segment, Chr 7, Massachusetts Institute of Technology 43 unknown 246163 L1Md-Gf68 GF68 - - L1 repeat, Gf subfamily, member 68 other 108167348 XR_001785032 Gm45954 - - 5 G3|5 predicted gene, 45954 ncRNA 668605 XM_017315276 Gm9265 EG668605 - 12 A1.2|12 predicted gene 9265 protein-coding 627430 Gm6757 EG627430|Hspd1-6p - 1|1 C1.1 heat shock protein 1 (chaperonin) pseudogene 6 pseudo 100417851 Gm18862 - - 6|6 D1 katanin p80 (WD40-containing) subunit B 1 pseudogene pseudo 230125 Mm.260210 NM_001009949 ENSMUSG00000045973 Slc25a51 9130208E07Rik|D130005A03Rik|Gm138|Mcart1 - 4|4 B1 solute carrier family 25, member 51 protein-coding 52629 D11Ertd518e - - 11 42.21 cM DNA segment, Chr 11, ERATO Doi 518, expressed unknown 100416348 Gm18060 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 213081 Mm.127550 NM_153391 ENSMUSG00000037890 Wdr19 C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638 - 5|5 C3.1 WD repeat domain 19 protein-coding 105245305 XR_872111 Gm40780 - - 10 D2|10 predicted gene, 40780 ncRNA 108655 Mm.234965 NM_053202 ENSMUSG00000030067 Foxp1 3110052D19Rik|4932443N09Rik|AI461938|AW494214 - 6|6 D3 forkhead box P1 protein-coding 62444 D10Mit286 - - 10 29.26 cM DNA Segment, Chr 10 Massachusetts Institute of Technology 286 unknown 209225 Mm.290925 NM_175433 ENSMUSG00000048897 Zfp710 5430400N05Rik|9830165K13|AI324798|Znf710 - 7|7 D2 zinc finger protein 710 protein-coding 102639302 Gm28459 - - Y|Y predicted gene 28459 protein-coding 100035325 Brnvl1 - - - brain volume 1 unknown 735269 NR_030488 ENSMUSG00000076051 Mir707 Mirn707|mmu-mir-707 - 7 B3|7 microRNA 707 ncRNA 102633004 XR_379576 Gm30936 - - 9 C|9 predicted gene, 30936 ncRNA 72245 Mm.331640 1700018M17Rik - - 4|4 RIKEN cDNA 1700018M17 gene unknown 108167689 LOC108167689 - - 9 F4 ATP synthase F(0) complex subunit C2, mitochondrial pseudogene pseudo 257768 Olfr1488-ps1 EG257768|Gm4998 - 19 A|19 olfactory receptor 1488, pseudogene 1 pseudo 105245029 XR_870984 Gm40540 - - 9 E3.1|9 predicted gene, 40540 ncRNA 102638481 Gm35034 - - 4|4 predicted gene, 35034 ncRNA 100035898 Ath24 - - - atherosclerosis 24 unknown 210582 Mm.296876 NM_001081040 ENSMUSG00000039914 Coq10a Gm1 - 10|10 D3 coenzyme Q10A protein-coding 492852 Sluc17 - - 2 102.29 cM susceptibility to lung cancer 17 unknown 105245119 Gm40613 - - 10|10 predicted gene, 40613 ncRNA 102467509 n-TCgca55 n-Tc55 - 11 D|11 nuclear encoded tRNA cysteine 55 (anticodon GCA) tRNA 102637486 XR_879802 Gm34281 - - 11 A5|11 predicted gene, 34281 ncRNA 319913 A630064C07Rik - - 1|1 RIKEN cDNA A630064C07 gene protein-coding 75818 Mm.410817 NR_040569 4930478L05Rik - - 16|16 C3.1 RIKEN cDNA 4930478L05 gene ncRNA 664931 Gm7411 EG664931 - 18 A1|18 protein arginine N-methyltransferase 8 pseudogene pseudo 108169035 Gm16288 - - 5 B1|5 16.23 cM 40S ribosomal protein S25 pseudogene pseudo 107303348 NM_001320725 Gm45935 Setdb2-phf11c - 14 C3|14 predicted gene, 45935 protein-coding 100035995 Chlq16 - - - circulating hormone level QTL 16 unknown 105244170 Mm.446770 XR_879865 LOC105244170 - - 11 B1.3 uncharacterized LOC105244170 ncRNA 102636976 Gm21719 - - Y|Y predicted gene, 21719 protein-coding 239081 Mm.291512 NM_205819 ENSMUSG00000051969 Tlr11 Gm287 - 14|14 C1 toll-like receptor 11 protein-coding 258247 Mm.377391 NM_207144 ENSMUSG00000051340 Olfr645 MOR13-5 - 7|7 E3 olfactory receptor 645 protein-coding 73094 Mm.54201 NM_144906 ENSMUSG00000028524 Sgip1 3110007P09Rik|SGIP1alpha|gag - 4|4 C6 SH3-domain GRB2-like (endophilin) interacting protein 1 protein-coding 108167322 XR_878224 LOC108167322 - - X D uncharacterized LOC108167322 ncRNA 66306 Mm.29424 NM_175104 ENSMUSG00000034300 Fam53c 2810012G03Rik|Gm21179 - 18|18 B1 family with sequence similarity 53, member C protein-coding 68097 Mm.246436 NM_026556 ENSMUSG00000020483 Dynll2 1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2 - 11|11 C dynein light chain LC8-type 2 protein-coding 93903 D16Jhu38 662M24.T7 - - DNA segment, Chr 16, Johns Hopkins University 38 unknown 258146 Olfr709-ps1 MOR260-7 - 7|7 E3 olfactory receptor 709, pseudogene 1 pseudo 102637664 XR_389180 Gm34418 Gm45849 - 11 E2|11 predicted gene, 34418 ncRNA 668375 Gm9136 EG668375 - 12|12 F1 transducin-like enhancer of split 6 pseudogene pseudo 20220 Mm.30173 NM_009119 ENSMUSG00000021963 Sap18 C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1 - 14 C3|14 30.51 cM Sin3-associated polypeptide 18 protein-coding 111802 Iapls3-37 - - - intracisternal A particle, lymphocyte specific 3-37 other 100036477 Pfibs1 - - - pulmonary fibrosis susceptibility 1 unknown 102637148 XR_876016 Gm34032 - - 16 B2|16 predicted gene, 34032 ncRNA 29859 Mm.248796 NM_013873 ENSMUSG00000018865 Sult4a1 2400007A17Rik|AI853543|BR-STL|BR-STL-1|NST|ST4A1|Sultx3|mBR-STL - 15|15 E2 sulfotransferase family 4A, member 1 protein-coding 110406 Igf1q2 - - - insulin-like growth factor 1 QTL 2 unknown 140644 Fembm6 - - - femoral bone morphometry 6 unknown 108168502 Gm46698 - - Y A1|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 102465990 NR_106146 ENSMUSG00000098289 Mir6715 Gm27474|mmu-mir-6715 - 19|19 D2 microRNA 6715 ncRNA 100035920 Spnw1 - - - spleen weight 1 unknown 114533 Pgia15 - - - proteoglycan induced arthritis 15 unknown 69903 Mm.181396 NM_028544 ENSMUSG00000044562 Rasip1 1110025D03Rik|2610025P08Rik|AI853551|Rain - 7|7 B3 Ras interacting protein 1 protein-coding 13731 Mm.246009 NM_007929 ENSMUSG00000022505 Emp2 XMP - 16 A1|16 5.54 cM epithelial membrane protein 2 protein-coding 102631979 XR_381046 LOC102631979 - - 11 A1 uncharacterized LOC102631979 ncRNA 102632890 Mm.371236 Gm13211 - - 2|2 4.6 cM predicted gene 13211 ncRNA 100093645 Trnam-cau - - - transfer RNA methionine (anticodon CAU) tRNA 100039743 Gm2398 - - 12|12 E polyglutamine binding protein 1 pseudogene pseudo 105398 Mm.127764 9330199F22Rik BB085416 - - RIKEN cDNA 9330199F22 gene protein-coding 102632586 XR_001779641 Gm30624 - - 10 D1|10 predicted gene, 30624 ncRNA 108169063 Gm43247 - - 5 F|5 60S ribosomal protein L21 pseudogene pseudo 72274 Mm.396202 NR_040594 ENSMUSG00000100799 1700027H10Rik - - 3|3 B RIKEN cDNA 1700027H10 gene ncRNA 100035165 Crhr1taq2 - - 12 37.16 cM Crhr1 transcript abundance QTL 2 unknown 100316804 NR_130325 ENSMUSG00000080580 Mir466f-4 Mirn466f-4|mmu-mir-466f-4 - 13 C1|13 36.69 cM microRNA 466f-4 ncRNA 258344 Mm.390356 NM_146347 ENSMUSG00000069818 Olfr390 MOR135-26 - 11|11 B4 olfactory receptor 390 protein-coding 100035793 Vtbt18 - - 17 2.11 cM vertebral trabecular bone trait 18 unknown 77546 8030443L12Rik - - 1|1 RIKEN cDNA 8030443L12 gene protein-coding 19511 Rb(2.18)6Rma Rb6Rma - - Robertsonian translocation, Chr 2 and 18, Universita di Roma 6 other 102636380 XR_390879 LOC102636380 - - 4 D3 uncharacterized LOC102636380 ncRNA 102632522 XR_387050 Gm30577 - - X E2|X predicted gene, 30577 ncRNA 112436689 Catsper1au - - - Catsper1 antisense upstream transcript protein-coding 100034904 Eae34 - - - experimental allergic encephalomyelitis susceptibility 34 unknown 11958 Mm.136093 NM_007507 ENSMUSG00000050856 Atp5k 2610008D24Rik|Atp5i|Lfm1 - 5 F|5 53.11 cM ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E protein-coding 102638030 Gm21907 - - Y|Y predicted gene, 21907 protein-coding 110493 Tcra-V3.4 - - - T cell receptor alpha, variable 3.4 other 100035771 Skmw3 - - - skeletal muscle weight 3 unknown 676484 Gm9679 - - 3 B|3 predicted gene 9679 protein-coding 65961 Mm.490364 NM_023054 ENSMUSG00000070697 Utp3 2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10 - 5|5 E1 UTP3 small subunit processome component protein-coding 61578 DXMit157 - - X 75.51 cM DNA segment, Chr X, Massachusetts Institute of Technology 157 unknown 19522 Rb(3.14)7Tu Rb7Tu - - Robertsonian translocation, Chr 3 and 14, Tubingen 7 other 359915 DXMgc87 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 87 unknown 62033 D2Mit522 - - - DNA Segment, Chr 2, Massachusetts Institute of Technology 522 unknown 21407 Mm.3881 NM_009328 ENSMUSG00000068079 Tcf15 Meso1|bHLH-EC2 - 2 G3|2 74.83 cM transcription factor 15 protein-coding 100037413 Mm.459347 XR_390699 Gm13274 - - 4 C4|4 predicted gene 13274 ncRNA 666792 Gm8291 EG666792 - 8|8 A4 chromodomain helicase DNA binding protein 6 pseudogene pseudo 545866 Gm5880 EG545866 - 6|6 D1 RNA binding motif protein 17 pseudogene pseudo 108168813 XR_001783546 Gm46775 - - 2 H3|2 predicted gene, 46775 ncRNA 108168345 XR_001782196 Gm46600 - - 17 A3.3|17 predicted gene, 46600 ncRNA 22370 Mm.3667 NM_011707 ENSMUSG00000017344 Vtn AI256434|Vn - 11 B5|11 46.74 cM vitronectin protein-coding 100124661 Trbv5 Tcrb-V1 - 6 19.13 cM|6 B1 T cell receptor beta, variable 5 other 545792 Gm5871 EG545792 - 5|5 F predicted gene 5871 pseudo 70763 6330419E04Rik - - 6|6 RIKEN cDNA 6330419E04 gene protein-coding 110029 Iva1 - - - isovaleric acid smelling 1 protein-coding 100041215 Gm3208 - - 14 A1|14 predicted gene 3208 protein-coding 67505 Mm.49048 NM_026206 ENSMUSG00000060738 Prl7c1 1600017N11Rik|Ghd20|PLP-O|Prlpo|Prplo - 13|13 A3.1 prolactin family 7, subfamily c, member 1 protein-coding 545510 Mm.484277 XR_880726 Gm10258 EG545510 - 3 A3|3 predicted gene 10258 unknown 100043489 Mm.326535 NR_037957 ENSMUSG00000097290 1300002E11Rik 1500026P21Rik - 16|16 B1 RIKEN cDNA 1300002E11 gene ncRNA 105242664 Gm38817 - - 6|6 predicted gene, 38817 ncRNA 108036 Cfhe - - - complement component factor h, electrophoretic variant protein-coding 105242838 XR_880098 Gm38937 - - 11 C|11 predicted gene, 38937 ncRNA 21432 Mm.18154 NM_009337 ENSMUSG00000041359 Tcl1 Tcl1a - 12 E|12 55.28 cM T cell lymphoma breakpoint 1 protein-coding 231130 Mm.28615 NM_139064 ENSMUSG00000059866 Tnip2 1810020H16Rik|ABIN-2|AI428870 - 5|5 B2 TNFAIP3 interacting protein 2 protein-coding 100416171 Gm17956 - - 3|3 F2.2 predicted gene, 17956 pseudo 76874 Mm.437529 NR_155520 4930469K13Rik - - 11|11 A4 RIKEN cDNA 4930469K13 gene ncRNA 69625 Mm.283231 XR_001778262 2310014F06Rik - - 7|7 F1 RIKEN cDNA 2310014F06 gene unknown 100043839 Gm14148 - - 2|2 G3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100312529 Vmn1r-ps99 Gm11289 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 97 pseudo 103236 Mm.29873 NM_134002 ENSMUSG00000003345 Csnk1g2 2810429I12Rik|AI463719 - 10|10 C1 casein kinase 1, gamma 2 protein-coding 621381 Mm.440273 NM_001170979 Gm6222 EG621381 - X|X D predicted pseudogene 6222 pseudo 105245985 XR_875447 Gm41353 - - 15 D3|15 predicted gene, 41353 ncRNA 105244327 XR_866859 Gm39960 - - 2 G3|2 predicted gene, 39960 ncRNA 217721 Mm.301076 NM_145447 ENSMUSG00000034258 Flvcr2 CCT|Mfsd7c - 12|12 D2 feline leukemia virus subgroup C cellular receptor 2 protein-coding 259011 Mm.340930 NM_147009 ENSMUSG00000070383 Olfr389 MOR135-6 - 11|11 B4 olfactory receptor 389 protein-coding 105246843 XR_879476 Gm42064 - - 19 A|19 predicted gene, 42064 ncRNA 100416229 Gm17985 - - 7|7 D3 predicted gene, 17985 pseudo 76722 Mm.316438 NM_198415 ENSMUSG00000021622 Ckmt2 2300008A19Rik|ScCKmit - 13|13 C3 creatine kinase, mitochondrial 2 protein-coding 19530 Rb(3.8)2Ei Rb2Ei - - Robertsonian translocation, Chr 3 and 8, Eicher 2 other 102339 Mm.272930 NM_133973 ENSMUSG00000031753 Cog4 AW554810|D8Ertd515e - 8 E1|8 57.76 cM component of oligomeric golgi complex 4 protein-coding 102642808 Mm.90787 LOC102642808 - - - protein BEX3-like protein-coding 102632382 LOC102632382 - - 1 A2 mitochondrial import inner membrane translocase subunit Tim23 pseudogene pseudo 111698 Mpmv4 Env-3|Mpmv-4|Xmmv-3 - - modified polytropic murine leukemia virus 4 other 102634271 XR_383543 Gm31896 - - 14 D2|14 predicted gene, 31896 ncRNA 667259 Mm.480258 NM_001166742 ENSMUSG00000094589 Vmn1r118 EG667259|Gm8542 - 7|7 A3 vomeronasal 1 receptor 118 protein-coding 52702 Mm.103986 D11Ertd712e - - 11 85.24 cM DNA segment, Chr 11, ERATO Doi 712, expressed protein-coding 20887 Mm.368982 NM_133670 ENSMUSG00000030711 Sult1a1 AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1 - 7 F3|7 69.25 cM sulfotransferase family 1A, phenol-preferring, member 1 protein-coding 100144395 Mm.424931 Nct1 - - - non-coding in testis 1 ncRNA 12283 Mm.26135 NM_133781 ENSMUSG00000036707 Cab39 AA408805|AA960512|C78372|MO25|MO25alpha - 1|1 C5 calcium binding protein 39 protein-coding 78496 1700015O03Rik - - - RIKEN cDNA 1700015O03 gene protein-coding 72672 Mm.313523 NM_028319 ENSMUSG00000049164 Zfp518a 2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335 - 19 C3|19 zinc finger protein 518A protein-coding 360068 D17Jcs21 - - - DNA segment, Chr 17, John C. Schimenti 21 unknown 19864 Rnu6-ps2 Gm24955 - 4 D2.1|4 U6 small nuclear RNA, pseudogene 2 pseudo 667125 Csnk2a1-ps1 EG667125|Gm8471 - 14|14 A1 casein kinase 2, alpha 1 polypeptide, pseudogene 1 pseudo 102634038 XR_377887 Gm31721 - - 6 D1|6 predicted gene, 31721 ncRNA 30054 Mm.287783 NM_001033043 ENSMUSG00000000365 Rnf17 MMIP-2|Mmip2|TDRD4 - 14|14 C3 ring finger protein 17 protein-coding 71223 Mm.359970 NM_001162955 ENSMUSG00000047293 Gpr15 4933439K08Rik - 16|16 C1.2 G protein-coupled receptor 15 protein-coding 227674 Mm.44179 NM_001033294 ENSMUSG00000026806 Ddx31 5830444G11Rik|Gm997 - 2|2 A3 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 protein-coding 268882 Mm.256137 NM_173439 ENSMUSG00000035764 Fbxo45 2610017J04Rik|AI463119|BC026799 - 16|16 B2 F-box protein 45 protein-coding 667277 Mm.481484 NM_001113356 ENSMUSG00000098470 C1rb Gm8551|mC1rB - 6 F2|6 complement component 1, r subcomponent B protein-coding 61960 D7Mit330 - - 7 64.07 cM DNA Segment, Chr 7, Massachusetts Institute of Technology 330 unknown 114717 Embl2 - - - embryonic lethal 2 unknown 62495 D10Mit139 - - 10 39.72 cM DNA segment, Chr 10, Massachusetts Institute of Technology 139 unknown 77578 Mm.226175 NM_029933 ENSMUSG00000038256 Bcl9 2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130 - 3|3 F2.1 B cell CLL/lymphoma 9 protein-coding 100417391 Gm18586 - - 9|9 A5.1 ubiquitin specific peptidase 10 pseudogene pseudo 71554 8430427G23Rik - - - RIKEN cDNA 8430427G23 gene protein-coding 108167632 Gm46097 - - 1 C5|1 predicted gene, 46097 pseudo 102635213 Gm32608 - - 12|12 predicted gene, 32608 ncRNA 192190 Mm.211494 NM_138674 ENSMUSG00000038725 Pkhd1l1 AB055648|PKHDL1 - 15|15 B3.2 polycystic kidney and hepatic disease 1-like 1 protein-coding 97130 Mm.331907 NM_001033189 ENSMUSG00000050390 C77080 mKIAA1522 - 4|4 D2.2 expressed sequence C77080 protein-coding 109280082 LOC109280082 Mm766 - - VISTA enhancer mm766 biological-region 102640770 XR_376944 Gm36760 - - 5 B3|5 predicted gene, 36760 ncRNA 209558 Mm.338425 NM_134005 ENSMUSG00000019989 Enpp3 AI876438|CD203c - 10|10 A4 ectonucleotide pyrophosphatase/phosphodiesterase 3 protein-coding 102635674 Gm13322 - - 2|2 12.32 cM predicted gene 13322 ncRNA 110038 Agp3 Agp-3 - - anti gp70 immune complex 3 protein-coding 665455 Gm7640 EG665455 - 13|13 B3 proteasome (prosome, macropain) subunit, alpha type 2 pseudogene pseudo 102635098 Gm29317 - - Y|Y predicted gene 29317 protein-coding 102639122 XR_376590 Gm35510 - - 4 D2.1|4 predicted gene, 35510 ncRNA 545428 Mm.26579 NM_001025576 ENSMUSG00000044033 Ccdc141 2610301F02Rik|CAMDI - 2|2 C3 coiled-coil domain containing 141 protein-coding 100042148 Gm3695 - - 12 D1|12 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 71300 Mm.443309 NM_027754 ENSMUSG00000078179 Rnf148 4933432M07Rik|Greul3 - 6|6 A3.1 ring finger protein 148 protein-coding 75422 Mm.10508 NM_029280 ENSMUSG00000051730 Mettl5 2810410A08Rik - 2|2 C2 methyltransferase like 5 protein-coding 62227 D17Mit33a D17Mit33 - 17 18.31 cM DNA segment, Chr 17, Massachusetts Institute of Technology 33a unknown 257899 Mm.376112 NM_001011695 ENSMUSG00000075215 Olfr1000 MOR175-9 - 2|2 D olfactory receptor 1000 protein-coding 114666 Mm.444495 NM_001037822 ENSMUSG00000073785 Krtap5-5 A030001H12Rik|AI586182|BB149782 - 7|7 F5 keratin associated protein 5-5 protein-coding 15432 Mm.57124 NM_008274 ENSMUSG00000001823 Hoxd12 Hox-4.7|Hox-5.6 - 2 C3|2 44.13 cM homeobox D12 protein-coding 20020 Mm.16533 NM_009089 ENSMUSG00000005198 Polr2a 220kDa|Rpb1|Rpo2-1 - 11 B3|11 42.86 cM polymerase (RNA) II (DNA directed) polypeptide A protein-coding 70745 Mm.445114 6330418B08Rik - - 1|1 RIKEN cDNA 6330418B08 gene protein-coding 242646 Mm.358914 NM_175030 ENSMUSG00000047671 Tctex1d4 4833401D15Rik - 4|4 D1 Tctex1 domain containing 4 protein-coding 100417825 Gm18849 - - 1|1 C1.1 asparagine synthetase domain containing 1 pseudogene pseudo 69564 Mm.437211 NM_027120 ENSMUSG00000004939 Nmrk2 2310015C21Rik|Itgb1bp3|Mibp - 10|10 C1 nicotinamide riboside kinase 2 protein-coding 100039499 Mm.160382 NM_001167568 ENSMUSG00000096244 Vmn1r187 - - 7|7 vomeronasal 1 receptor Vmn1r187 protein-coding 105242749 Gm38881 - - 6|6 predicted gene, 38881 ncRNA 64085 Mm.440903 NM_022319 ENSMUSG00000032452 Clstn2 2900042C18Rik|AI448973|CSTN2|Cs2|Cst-2|mKIAA4134 - 9|9 E3.3 calsyntenin 2 protein-coding 102640133 XR_384335 LOC102640133 - - 15 E3 uncharacterized LOC102640133 ncRNA 100126433 Trgj2 Gm16674|TCRG - 13|13 A2 T cell receptor gamma joining 2 other 76976 Mm.328305 NM_029823 ENSMUSG00000048040 Arxes2 2900062L11Rik|Spc22/23|Spcs3 - X|X F1 adipocyte-related X-chromosome expressed sequence 2 protein-coding 654453 Mm.237840 NM_001039119 ENSMUSG00000074454 Defb33 BD-33|EG654453 - 8 A2|8 defensin beta 33 protein-coding 552909 LOC552909 - - - uncharacterized LOC552909 unknown 66622 Mm.34261 NM_025666 ENSMUSG00000041712 Ubr7 5730410I19Rik|AA589405|AW557761 - 12|12 E ubiquitin protein ligase E3 component n-recognin 7 (putative) protein-coding 384752 Mm.359130 XM_017312461 Nlrp4d Nalp-beta|Nalp4d - 7|7 A1 NLR family, pyrin domain containing 4D protein-coding 102634973 XR_377779 Gm32425 - - 6 C3|6 predicted gene, 32425 ncRNA 27354 Mm.20866 NM_013752 ENSMUSG00000028224 Nbn Nbs1 - 4|4 A2 nibrin protein-coding 78119 Mm.437521 XR_865354 4930439A04Rik - - 1|1 B RIKEN cDNA 4930439A04 gene ncRNA 102631654 XR_385618 Gm29938 - - 17 C|17 predicted gene, 29938 ncRNA 102632690 Mm.387246 NR_153957 Gm10646 - - 9|9 C predicted gene 10646 ncRNA 100551508 Mm.488202 Gm17344 - - 8 D3|8 57.32 cM predicted gene, 17344 ncRNA 665783 Gm7785 EG665783 - 1|1 D predicted gene 7785 pseudo 105243790 Gm39564 - - 2|2 predicted gene, 39564 ncRNA 320089 Mm.439103 4931433A09Rik - - 9|9 RIKEN cDNA 4931433A09 gene protein-coding 631010 Gm7052 - - 17|17 A3.3 sperm motility kinase Y pseudogene pseudo 19696 Mm.4869 NM_009044 ENSMUSG00000020275 Rel c-Rel - 11 A3.2|11 14.36 cM reticuloendotheliosis oncogene protein-coding 668005 Gm13674 - - 2|2 C3 predicted gene 13674 pseudo 258938 Mm.451671 NM_146936 ENSMUSG00000048292 Olfr1417 MOR266-2 - 19|19 A olfactory receptor 1417 protein-coding 102636141 XR_382501 Gm33294 - - 13 B1|13 predicted gene, 33294 ncRNA 117079 Cpfd3 Cpfd-3q - 5 50.64 cM cerebellum pattern fissures, declival 3 unknown 546665 Gm5964 EG546665 - 16|16 B4 lactate dehydrogenase A pseudogene pseudo 259044 Mm.223425 NM_147042 ENSMUSG00000042774 Olfr1353 MOR139-2 - 10|10 C1 olfactory receptor 1353 protein-coding 668702 Gm13808 - - 2|2 E1 mitochondrial ribosomal protein L28 pseudogene pseudo 102635736 XR_384799 Gm32998 - - 16 B2|16 predicted gene, 32998 ncRNA 667924 Igkv3-10 IgK21-10|Igk-V21-10 - 6|6 C1 immunoglobulin kappa variable 3-10 other 105246188 XR_876365 Gm41521 - - 17 A1|17 predicted gene, 41521 ncRNA 111259 Snrp2b-rs2 - - - U2 small nuclear ribonucleoprotein 2B, related sequence 2 pseudo 93966 Mm.25793 NM_053149 ENSMUSG00000028332 Hemgn 4921524M03Rik|AI317176|EDAG|Hgn|mNDR - 4|4 B1 hemogen protein-coding 21046 T(10;16)59H T59H - - reciprocal translocation, Chr 10 and 16, Harwell 59 other 213121 Mm.39732 NM_001081139 ENSMUSG00000038354 Ankrd35 4732436F15Rik - 3|3 F2.1 ankyrin repeat domain 35 protein-coding 108168553 XM_017318748 ENSMUSG00000102122 LOC108168553 - - Y C1 X-linked lymphocyte-regulated protein PM1-like protein-coding 100526529 NR_037300 ENSMUSG00000093039 Mir1912 mir-1912|mmu-mir-1912 - X F2|X 68.46 cM microRNA 1912 ncRNA 102639941 XR_382037 Gm36136 - - 13 A1|13 predicted gene, 36136 ncRNA 100862473 XM_003689170 LOC100862473 Ifi203c - - cell wall protein AWA1-like protein-coding 100040417 Gm2759 - - X A2|X predicted gene 2759 pseudo 102635660 LOC102635660 - - 8 D3 guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 pseudogene pseudo 432940 Mm.309164 NM_001013792 ENSMUSG00000046034 Otulin C79097|Fam105b|m3Sapc|m7-1Sapc - 15|15 B1 OTU deubiquitinase with linear linkage specificity protein-coding 72125 Mm.275499 NM_028113 ENSMUSG00000021986 Amer2 2600011E07Rik|Fam123a - 14|14 D1 APC membrane recruitment 2 protein-coding 102633904 XR_375126 Gm31618 - - 2 H1|2 predicted gene, 31618 ncRNA 101056302 LOC101056302 - - - RNA-binding protein EWS pseudogene pseudo 359967 DXMgc104 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 104 unknown 100503869 Mm.370532 NR_040300 ENSMUSG00000086212 Mkln1os Gm13845 - 6 A3.3|6 12.57 cM muskelin 1, intracellular mediator containing kelch motifs, opposite strand ncRNA 17826 Mm.391142 NM_023166 ENSMUSG00000024939 Fam89b 1110021A21Rik|MMTV|Mtvr2 - 19 A|19 4.34 cM family with sequence similarity 89, member B protein-coding 240753 Mm.253559 NM_182930 ENSMUSG00000041757 Plekha6 9530028L01Rik|AU042621|Pepp3 - 1|1 E4 pleckstrin homology domain containing, family A member 6 protein-coding 209378 Mm.313876 NM_172471 ENSMUSG00000025780 Itih5 4631408O11Rik|5430408M01Rik|E130106B02 - 2|2 A1 inter-alpha (globulin) inhibitor H5 protein-coding 629608 Gm6989 EG629608 - 12|12 A2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 667900 Gm8870 EG667900 - 1|1 C3 ribosomal protein L7A pseudogene pseudo 102632812 Mm.375328 XR_389605 Gm30789 - - 3 A2|3 predicted gene, 30789 ncRNA 62827 D13Mit233 - - 13 43.68 cM DNA segment, Chr 13, Massachusetts Institute of Technology 233 unknown 102636307 XR_374931 Gm33412 - - 2 E5|2 predicted gene, 33412 ncRNA 329430 Mm.301664 A330043C09Rik Gm825 - 2|2 C3 RIKEN cDNA A330043C09 gene protein-coding 112195 Scc4 - - 17 49.75 cM colon tumor susceptibility 4 unknown 100042057 Mm.489022 XR_001778576 Gm3643 Gm35256 - 8 B3.3|8 predicted gene 3643 unknown 217030 Mm.82680 NM_194341 ENSMUSG00000034940 Synrg Ap1gbp1|SYNG - 11|11 C synergin, gamma protein-coding 12227 Mm.392646 NM_007570 ENSMUSG00000020423 Btg2 AA959598|APRO1|Pc3|TIS21 - 1 E4|1 58.1 cM B cell translocation gene 2, anti-proliferative protein-coding 621875 Mm.462285 NM_001037910 A530040E14Rik - - 1|1 C5 RIKEN cDNA A530040E14 gene ncRNA 329679 Mm.244005 NM_001162999 ENSMUSG00000061175 Fnip2 D630023B12Rik|mKIAA1450 - 3|3 E3 folliculin interacting protein 2 protein-coding 18767 Mm.3193 NM_008862 ENSMUSG00000027499 Pkia AI415001|PKIalpha - 3|3 A1 protein kinase inhibitor, alpha protein-coding 258100 Olfr1147-ps1 MOR264-13P - 2|2 D olfactory receptor 1147, pseudogene 1 pseudo 102635572 XR_871473 Gm38480 - - 10 A3|10 predicted gene, 38480 ncRNA 100035272 Ascla1 - - 10 9.82 cM atherosclerotic lesion area 1 unknown 399640 Mm.270259 A1300008O04Rik - - - RIKEN cDNA A1300008O04 gene protein-coding 664901 Vamp7-ps Gm14338|Sybl1-ps - 2|2 H4 vesicle-associated membrane protein 7, pseudogene pseudo 61178 D18Mit22 - - 18 13.41 cM DNA segment, Chr 18, Massachusetts Institute of Technology 22 unknown 14941 Mm.482071 NM_010372 ENSMUSG00000059256 Gzmd CCP5|Ctla-5|Ctla5 - 14 C3|14 28.19 cM granzyme D protein-coding 258643 Mm.377610 NM_146649 ENSMUSG00000075141 Olfr1160 MOR173-1 - 2|2 D olfactory receptor 1160 protein-coding 100503595 Mm.421314 NR_040443 ENSMUSG00000085833 Gm13003 - - 4 D3|4 69.52 cM predicted gene 13003 ncRNA 320323 Mm.101257 XR_383352 A930038B10Rik - - 14|14 B RIKEN cDNA A930038B10 gene unknown 54127 Mm.352374 NM_016844 ENSMUSG00000067288 Rps28 - - 17|17 B1 ribosomal protein S28 protein-coding 258924 Mm.236410 NM_146922 ENSMUSG00000063881 Olfr376 MOR135-12 - 11|11 B4 olfactory receptor 376 protein-coding 105242648 XR_869053 Gm38804 Gm44119 - 6 B2.3|6 predicted gene, 38804 ncRNA 105243579 XR_871389 Gm39464 - - 9 F4|9 predicted gene, 39464 ncRNA 102635749 XR_390560 Gm33009 - - 4 B1|4 predicted gene, 33009 ncRNA 108167566 Gm46062 - - 8 D1|8 ATP synthase subunit epsilon, mitochondrial pseudogene pseudo 105245701 XR_874425 Gm41112 - - 14 A3|14 predicted gene, 41112 ncRNA 61666 D7Mit228 - - 7 25.61 cM DNA segment, Chr 7, Massachusetts Institute of Technology 228 unknown 387143 NR_029537 ENSMUSG00000065451 Mir101a Mirn101|Mirn101a|miR-101|mir-101a - 4|4 C6 microRNA 101a ncRNA 620009 Gm6123 EG620009|Gm1831 - 1|1 A1 pyruvate dehydrogenase (lipoamide) beta pseudogene pseudo 73286 Mm.426884 NR_045439 ENSMUSG00000092239 1700031A10Rik - - 17|17 B1 RIKEN cDNA 1700031A10 gene ncRNA 68170 Mm.31263 NM_026592 ENSMUSG00000027165 B230118H07Rik NWC - 2 E2|2 53.83 cM RIKEN cDNA B230118H07 gene protein-coding 17185 Matr3-ps1 - - 4|18 matrin 3, pseudogene 1 pseudo 258689 Mm.271530 NM_146694 ENSMUSG00000096485 Olfr1466 MOR202-12 - 19|19 A olfactory receptor 1466 protein-coding 108167529 XR_001778543 Gm45470 - - 8 A2|8 predicted gene 45470 ncRNA 360040 D17Jcs5 - - - DNA segment, Chr 17, John C. Schimenti 5 unknown 110690 Cyp2a - - - cytochrome P450, family 2, subfamily a other 652986 Rpl18-ps2 EG652986|Gm7323 - 6|6 F3 ribosomal protein L18, pseudogene 2 pseudo 105245907 XR_875101 Gm41287 - - 15 B2|15 predicted gene, 41287 ncRNA 100417620 Gm18719 - - 3|3 E3 replication factor C (activator 1) 1 pseudogene pseudo 100035597 Kdnw2 - - - kidney weight 2 unknown 105246179 XR_876314 Gm41513 - - 16 C4|16 predicted gene, 41513 ncRNA 102640291 Gm14630 - - X A6|X 32.13 cM predicted gene 14630 pseudo 100036121 Mskt7 - - - musculoskeletal traits 7 unknown 668926 Gm14141 - - 2|2 G3 ribosomal protein L7A pseudogene pseudo 102211 Mm.25936 AU015777 - - - expressed sequence AU015777 unknown 100035438 Eac3 - - - ethyl alcohol consumption QTL 3 unknown 69706 Mm.28847 NM_001081406 ENSMUSG00000034883 Lrr1 2410005L11Rik|AU021780|LRR-1|Ppil5 - 12|12 C2 leucine rich repeat protein 1 protein-coding 76858 Mm.35644 NM_001002894 ENSMUSG00000016626 Nlrp14 4921520L01Rik|GC-LRR|Nalp-iota|Nalp14|Nalp14l - 7|7 E3 NLR family, pyrin domain containing 14 protein-coding 109388 Cbm2 Cbs8a - 8 47.12 cM cerebellum weight 2 unknown 74519 Mm.458387 NM_028979 ENSMUSG00000015224 Cyp2j9 8430417E17Rik - 4|4 C5 cytochrome P450, family 2, subfamily j, polypeptide 9 protein-coding 193813 Mm.30251 NM_139295 ENSMUSG00000024150 Mcfd2 1810021C21Rik|F5f8d|Lman1ip|Sdnsf - 17|17 E4 multiple coagulation factor deficiency 2 protein-coding 17954 Mm.388694 NM_008671 ENSMUSG00000082229 Nap1l2 Bpx - X D|X 45.97 cM nucleosome assembly protein 1-like 2 protein-coding 13453 Dp(12)7H Dp7H - - duplication, Chr 12, Harwell 7 other 100042806 Gm4042 - - 9|9 A5.3 phosphoglycerate mutase muscle-specific subunit pseudogene pseudo 668919 Gm14115 - - 2|2 G2 predicted gene 14115 pseudo 230088 Mm.260162 NM_172691 ENSMUSG00000036002 Fam214b B230312A22Rik - 4|4 A5 family with sequence similarity 214, member B protein-coding 100534292 Gm21016 - - 5|5 G2 zinc finger protein 498 pseudogene pseudo 67628 Mm.263913 NM_130889 ENSMUSG00000028333 Anp32b 2410015B15Rik|PAL31|PHAPI2a|Ssp29 - 4|4 B1 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B protein-coding 74314 Mm.415339 NR_046050 ENSMUSG00000100717 1700120G07Rik - - 7|7 F3 RIKEN cDNA 1700120G07 gene ncRNA 667756 Gm8795 EG667756 - 13|13 D2.2 predicted gene 8795 pseudo 105244719 XR_868333 Gm40277 - - 5 B1|5 predicted gene, 40277 ncRNA 102639822 XM_017312464 Gm36044 - - 7 A3|7 predicted gene, 36044 protein-coding 665929 Gm7851 EG665929 - X|X A5 ribosomal protein L36 pseudogene pseudo 116880 Pgia5 - - 9 35.6 cM proteoglycan induced arthritis 5 unknown 102639269 Gm35619 - - 13 B3|13 predicted gene, 35619 pseudo 259104 Mm.424091 NM_147100 ENSMUSG00000078624 Olfr613 MOR20-1|Olfr613-ps1|Olfr614 - 7|7 E3 olfactory receptor 613 protein-coding 77077 Mm.323861 9030205G03Rik - - 8|8 RIKEN cDNA 9030205G03 gene protein-coding 18778 Mm.20190 NM_011107 ENSMUSG00000029522 Pla2g1b Pla2a|sPLA2IB - 5|5 F phospholipase A2, group IB, pancreas protein-coding 100417168 Gm13452 - - 2|2 B crumbs homolog 1 pseudogene pseudo 102634794 Gm32295 - - Y|Y predicted gene, 32295 pseudo 20358 Mm.40909 NM_018744 ENSMUSG00000019647 Sema6a A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa - 18|18 C sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A protein-coding 17843 Mm.457982 NM_008648 ENSMUSG00000041333 Mup4 Mup-4|Mup1 - 4 B3|4 32.82 cM major urinary protein 4 protein-coding 104366 Mm.157452 NR_002897 ENSMUSG00000077709 Snora64 MBI-29|Rnu64 - 17|17 A3.3 small nucleolar RNA, H/ACA box 64 snoRNA 320919 Mm.131386 NR_138587 ENSMUSG00000097292 A230107N01Rik - - 13|13 C3 RIKEN cDNA A230107N01 gene ncRNA 102638397 XR_001779199 Gm34974 - - 9 B|9 predicted gene, 34974 ncRNA 100045332 LOC100045332 - - 19|19 ribosomal protein SA pseudogene pseudo 666729 Gm8260 EG666729 - X|X A6 predicted gene 8260 pseudo 100329 Mm.442583 AU043392 - - - expressed sequence AU043392 unknown 209512 Mm.300611 NM_001007266 ENSMUSG00000059763 Taar2 Gm224|Gm225|Gpr58|Tarr2 - 10|10 A4 trace amine-associated receptor 2 protein-coding 22774 Mm.8062 NM_009576 ENSMUSG00000036972 Zic4 - - 9 E3.2|9 48.26 cM zinc finger protein of the cerebellum 4 protein-coding 257777 Olfr454-ps1 EG257777|GA_x5J8B7W6337-801345-802245|Gm5004 - 6 B2.1|6 olfactory receptor 454, pseudogene 1 pseudo 105244862 XR_872687 Gm29007 - - 12 A3|12 predicted gene 29007 ncRNA 667531 Gm8688 EG667531 - 8|8 D1 predicted gene 8688 pseudo 71772 Mm.100065 NM_023625 ENSMUSG00000029598 Plbd2 1300012G16Rik|AU019810|P76 - 5|5 F phospholipase B domain containing 2 protein-coding 108167402 LOC108167402 - - - Ig heavy chain V region 5-84-like other 100418027 Gm20956 - - 16|16 C1.1 chaperonin containing Tcp1, subunit 8 (theta) pseudogene pseudo 104117 H35 H-35 - - histocompatibility 35 protein-coding 108912 Mm.33831 NM_175384 ENSMUSG00000048922 Cdca2 2610311M19Rik|AI586158 - 14|14 D1 cell division cycle associated 2 protein-coding 257913 Mm.377298 NM_181818 ENSMUSG00000078420 Olfr141 K17|MOR179-5 - 2|2 D olfactory receptor 141 protein-coding 546947 Rpl23a-ps8 EG546947|Gm6000 - 7|7 B1 ribosomal protein L23A, pseudogene 8 pseudo 78013 Mm.217172 4930477O03Rik - - 6|6 RIKEN cDNA 4930477O03 gene unknown 61623 D8Mit271 - - 8 60.86 cM DNA segment, Chr 8, Massachusetts Institute of Technology 271 unknown 102637553 XR_387242 Gm34331 - - 1 D|1 predicted gene, 34331 ncRNA 53356 Mm.427309 NM_016876 ENSMUSG00000070319 Eif3g 44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44 - 9|9 A3 eukaryotic translation initiation factor 3, subunit G protein-coding 61347 D4Mit116 - - 4 39.46 cM DNA segment, Chr 4, Massachusetts Institute of Technology 116 unknown 102640814 XR_373474 Gm28497 - - 1 C3|1 predicted gene 28497 ncRNA 62702 D17Mit138 - - 17 22.89 cM DNA segment, Chr 17, Massachusetts Institute of Technology 138 unknown 62120 D12Mit96 - - 12 46.73 cM DNA segment, Chr 12, Massachusetts Institute of Technology 96 unknown 54153 Mm.290655 NM_133914 ENSMUSG00000004952 Rasa4 AA793972|AW112107|BB079060|CAPRI|GAPL - 5|5 G2 RAS p21 protein activator 4 protein-coding 52183 D5Ertd255e - - 5 59.22 cM DNA segment, Chr 5, ERATO Doi 255, expressed protein-coding 105246846 Mm.17341 XR_879485 ENSMUSG00000110156 Gm42067 Gm45248 - 19 A|19 predicted gene, 42067 ncRNA 102638109 XR_868783 Gm34749 - - 6 A1|6 predicted gene, 34749 ncRNA 100042744 Gm15458 Gm1606 - 17|17 A3.3 predicted gene 15458 protein-coding 21300 T(X;17)15Rl T15Rl - - reciprocal translocation, Chr X and 17, Russell 15 other 100861889 Gm21302 - - Y|Y predicted gene, 21302 protein-coding 193217 Mm.100084 NR_003364 BC018473 - - 11|11 E2 cDNA sequence BC018473 ncRNA 102639152 XR_375413 Gm35532 - - 2 H4|2 predicted gene, 35532 ncRNA 18191 Mm.425766 NM_172544 ENSMUSG00000066392 Nrxn3 - - 12 D3|12 42.94 cM neurexin III protein-coding 623205 Gm11189 - - 11|11 B1.3 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene pseudo 105245015 XR_870878 Gm40529 - - 9 C|9 predicted gene, 40529 ncRNA 102643269 LOC102643269 - - - rRNA 2'-O-methyltransferase fibrillarin protein-coding 100093634 Trnaf-aaa - - - transfer RNA phenylalanine (anticodon AAA) tRNA 100035568 Vtbt12 - - 12 2.94 cM vertebral trabecular bone trait 12 unknown 668196 Gm9038 EG668196 - 6 G1|6 protein inhibitor of activated STAT 2 pseudogene pseudo 100316672 NR_035423 ENSMUSG00000080626 Mir1192 Mirn1192|mmu-mir-1192 - 19 B|19 17.91 cM microRNA 1192 ncRNA 22063 Mm.149633 NM_011643 ENSMUSG00000032839 Trpc1 Mtrp1|Trp1|Trrp1 - 9 E3.3|9 50.2 cM transient receptor potential cation channel, subfamily C, member 1 protein-coding 97798 C78148 - - - expressed sequence C78148 unknown 257967 Olfr1551-ps1 MOR211-7P - 19|19 olfactory receptor 1551, pseudogene 1 pseudo 628847 Gm6921 EG628847 - 8|8 E2 predicted pseudogene 6921 pseudo 223922 Mm.208714 NM_146065 ENSMUSG00000099083 Atf7 1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik - 15|15 F3 activating transcription factor 7 protein-coding 100126880 Mm.330752 Gm14243 - - - predicted gene 14243 unknown 546723 Mm.301509 NM_001037169 Ppp1r2-ps3 EG546723|Gm5972 - 19 C1|19 protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 3 pseudo 102632789 XR_391291 Gm30771 Gm44635 - 7 B3|7 predicted gene, 30771 ncRNA 110299 Ftl1-rs6 - - - ferritin light chain 1, related sequence 6 protein-coding 432649 Mm.347860 NM_001014396 ENSMUSG00000059301 Gm5434 EG432649 - 12 A3|12 ubiquitin-conjugating enzyme E2F (putative) pseudogene pseudo 94060 Mm.301748 NM_033175 ENSMUSG00000045475 Lce3c 2300007B01Rik|AV076207|Eig3|Sprrl1 - 3|3 F1 late cornified envelope 3C protein-coding 70256 2010107C10Rik - - 7|7 RIKEN cDNA 2010107C10 gene protein-coding 62699 D17Mit130 - - 17 57.39 cM DNA segment, Chr 17, Massachusetts Institute of Technology 130 unknown 243372 Mm.435190 NM_173429 ENSMUSG00000007216 Zfp775 C130032F08Rik|Znf775 - 6|6 B2.3 zinc finger protein 775 protein-coding 100034817 Lgth8 - - - body length 8 unknown 61088 DXMit187 - - X 8.1 cM DNA Segment, Chr X, Massachusetts Institute of Technology 187 unknown 105247246 XR_881943 Gm42377 - - 7 B1|7 predicted gene, 42377 ncRNA 102637821 Gm34534 - - 16|16 predicted gene, 34534 ncRNA 382277 Mm.379326 NM_001040669 ENSMUSG00000096620 Gm5169 Xmr - X|X A2 predicted gene 5169 protein-coding 109655 Hye - - - Hya expression unknown 258756 Mm.223188 NM_146761 ENSMUSG00000051509 Olfr414 MOR103-10 - 1|1 H3 olfactory receptor 414 protein-coding 404264 Mrgprb12-ps MrgB12 - 7|7 B4 MAS-related GPR, member B12, pseudogene pseudo 102632102 XM_017315300 LOC102632102 - - 12 A1.2 zinc finger protein 120-like protein-coding 102642160 NR_146600 Gm22496 - - 7 B5|7 predicted gene, 22496 snoRNA 53744 D0Tu7 D17Tu7 - - DNA segment, Tubingen 7 unknown 105245335 Gm40809 - - 10|10 predicted gene, 40809 pseudo 17220 Mm.378965 NM_008568 ENSMUSG00000029730 Mcm7 AI747533|Mcmd7|mCDC47 - 5|5 G2 minichromosome maintenance complex component 7 protein-coding 72135 Mm.273605 NM_028116 ENSMUSG00000034910 Pygo1 2600014C22Rik - 9|9 D pygopus 1 protein-coding 216987 Mm.274961 NM_144826 ENSMUSG00000035575 Utp6 4732497O03Rik|HCA66 - 11 B5|11 47.29 cM UTP6 small subunit processome component protein-coding 258053 Olfr496-ps1 MOR204-28P - 7|7 E3 olfactory receptor 496, pseudogene 1 pseudo 225256 Mm.269128 NM_181682 ENSMUSG00000061928 Dsg1b Dsg5|dsg1-beta - 18 A2|18 11.32 cM desmoglein 1 beta protein-coding 102634421 XR_388085 Gm32006 - - 8 E1|8 predicted gene, 32006 ncRNA 258065 Mm.377273 NM_001011819 ENSMUSG00000096806 Olfr312 GA_x5J8B7W3UM0-1747565-1747342|MOR222-4P - 11|11 B1.3 olfactory receptor 312 protein-coding 100418426 Gm19205 - - 19|19 A UTP3, small subunit processome component, homolog pseudogene pseudo 791309 Mm.326518 XR_380950 Gm9919 Gm19459 - 10 B4|10 29.3 cM predicted gene 9919 unknown 67220 Mm.458147 NM_023320 ENSMUSG00000015745 Plekho1 2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2 - 3|3 F2.1 pleckstrin homology domain containing, family O member 1 protein-coding 14526 Mm.45494 NM_008100 ENSMUSG00000000394 Gcg GLP-1|Glu|PPG - 2 C1.3|2 35.85 cM glucagon protein-coding 102635471 XR_375287 Gm32800 - - 2 H3|2 predicted gene, 32800 ncRNA 623830 Cyp2b19-ps EG623830|Gm6454 - 7|7 A3 cytochrome P450, family 2, subfamily b, polypeptide 19, pseudogene pseudo 74234 Mm.396194 N4bp2os 1700022K14Rik - 5|5 C3.1 NEDD4 binding protein 2, opposite strand unknown 108486 Ms75 MMS75 - - minisatellites detected by probe MMS75 other 100418260 Gm19105 - - 2|2 G1 Mki67 (FHA domain) interacting nucleolar phosphoprotein pseudogene pseudo 64290 Mm.440890 NM_022378 ENSMUSG00000059246 Foxb1 C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh - 9 D|9 38.76 cM forkhead box B1 protein-coding 71288 Mm.275963 4933440K10Rik - - 13|13 RIKEN cDNA 4933440K10 gene protein-coding 105244678 XR_868099 Gm40240 - - 4 D2.2|4 predicted gene, 40240 ncRNA 20764 Mm.57084 NR_003185 ENSMUSG00000027925 Sprr2j-ps Sprr2j - 3 F1|3 40.14 cM small proline-rich protein 2J, pseudogene pseudo 62213 D16Mit43 - - 16 31.5 cM DNA segment, Chr 16, Massachusetts Institute of Technology 43 unknown 66985 Mm.21202 NM_025886 ENSMUSG00000038618 Rassf7 2400009B11Rik|AW210608 - 7|7 F5 Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 protein-coding 110154 Ifi201 - - - interferon activated gene 201 protein-coding 100306943 NR_028576 ENSMUSG00000088789 Scarna13 U93 - 12|12 E small Cajal body-specific RNA 1 ncRNA 102639493 Gm35796 - - 13|13 predicted gene, 35796 ncRNA 17112 Mm.856 NM_008536 ENSMUSG00000027800 Tm4sf1 L6|M3s1 - 3|3 D transmembrane 4 superfamily member 1 protein-coding 100417450 Gm18614 - - X 57.28 cM|X F1 RAB18, member RAS oncogene family pseudogene pseudo 102638097 Mm.452810 XR_386145 Gm16344 Gm34742 - 18 B1|18 predicted gene 16344 ncRNA 100040048 Mm.6660 NM_001199959 ENSMUSG00000096826 Ccl27b Ctack|Scya27b - 4 A5|4 chemokine (C-C motif) ligand 27b protein-coding 492910 Mprf - - 7 1.91 cM maternal performance unknown 100504645 Mm.483783 Gm20328 - - 16|16 19.64 cM predicted gene, 20328 unknown 71275 Mm.79198 NM_027744 ENSMUSG00000072919 Noxred1 4933437F05Rik - 12|12 D2 NADP+ dependent oxidoreductase domain containing 1 protein-coding 100035283 Hdlq45 - - - HDL QTL 45 unknown 108511967 Zfpm1r7-zfpm1r21 Zfpm1R21|Zfpm1R7 - 8 E1 Zfpm1R7 and Zfpm1R21 erythroid cis-regulatory modules biological-region 104079 Mm.22970 NM_130858 ENSMUSG00000046719 Nxph3 - - 11|11 D neurexophilin 3 protein-coding 18346 Mm.222840 NM_146370 ENSMUSG00000061210 Olfr47 IB12|MOR261-9|Olfr13 - 6|6 B2.1 olfactory receptor 47 protein-coding 226178 Mm.329895 NM_146099 ENSMUSG00000047731 Wbp1l D19Wsu162e|Opal1 - 19 C3|19 38.97 cM WW domain binding protein 1 like protein-coding 102639169 Mm.461018 XR_869356 Gm20387 - - 6 E3|6 51.19 cM predicted gene 20387 ncRNA 434233 Mm.280784 XM_006508415 Gm5601 EG434233 - 7|7 F2 predicted pseudogene 5601 protein-coding 93705 Mm.247203 NM_033580 ENSMUSG00000103081 Pcdhgb8 - - 18|18 B3 protocadherin gamma subfamily B, 8 protein-coding 18550 Mm.5241 NM_011046 ENSMUSG00000030530 Furin 9130404I01Rik|Fur|PACE|Pcsk3|SPC1 - 7 D2|7 45.65 cM furin (paired basic amino acid cleaving enzyme) protein-coding 11694 Mm.10112 NM_007441 ENSMUSG00000014603 Alx3 - - 3 F2.3|3 46.83 cM aristaless-like homeobox 3 protein-coding 238427 Mm.422809 Ighv6-6 Gm16695|VH10G1 - 12|12 F2 immunoglobulin heavy variable 6-6 other 100040621 Gm2871 - - 14|14 A1 ribosomal protein L3 pseudogene pseudo 102636367 XR_384421 LOC102636367 - - 15 F1 uncharacterized LOC102636367 ncRNA 100416872 Gm16011 - - 16|16 B5 ankyrin repeat domain 35 pseudogene pseudo 110574 Tcra-V15.2 - - - T cell receptor alpha, variable 15.2 other 544883 Gm5788 EG544883 - 12|12 D2 predicted pseudogene 5788 pseudo 15397 Mm.469918 NR_015348 ENSMUSG00000086427 Hoxa11os Hoxa11as|Hoxa11s - 6 B3|6 25.4 cM homeobox A11, opposite strand ncRNA 71764 Mm.491174 NM_027909 ENSMUSG00000032120 C2cd2l 1300006O23Rik|Tmem24 - 9|9 A5.2 C2 calcium-dependent domain containing 2-like protein-coding 109522 Htas4 Ht4 - - hypothermia due to alcohol sensitivity 4 unknown 108168662 XM_017318873 ENSMUSG00000095785 LOC108168662 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 433926 Mm.439781 NM_001033550 ENSMUSG00000070639 Lrrc8b 2210408K08Rik|R75581|Ta-lrrp|mKIAA0231 - 5|5 E5 leucine rich repeat containing 8 family, member B protein-coding 320620 E430021H15Rik - - 5|5 RIKEN cDNA E430021H15 gene protein-coding 192950 Mm.337771 NM_001081652 ENSMUSG00000041073 Nacad D230024G13Rik|mKIAA0363 - 11|11 A1 NAC alpha domain containing protein-coding 108168943 Gm12721 - - 4 C6|4 48.95 cM small ubiquitin-related modifier 2 pseudogene pseudo 654432 Mm.458574 NR_002700 ENSMUSG00000044645 Gm7334 EG654432 - 17 C|17 B-cell translocation gene 3 pseudogene pseudo 668128 Mm.484022 NR_030720 Gm8989 EG668128|Gm21911 - 7|7 E3 very large inducible GTPase 1 pseudogene pseudo 108167590 XR_001778767 Gm46075 - - 8 A1.3|8 predicted gene, 46075 ncRNA 71602 Mm.249311 NM_181072 ENSMUSG00000032220 Myo1e 2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3 - 9 D|9 39.41 cM myosin IE protein-coding 83454 Mm.103155 NM_031259 ENSMUSG00000009941 Nxf2 4930455N06Rik|Nxf-b - X E3|X 56.31 cM nuclear RNA export factor 2 protein-coding 259302 Mm.236401 NM_080448 ENSMUSG00000030257 Srgap3 AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411 - 6|6 E3 SLIT-ROBO Rho GTPase activating protein 3 protein-coding 432500 Mm.131611 XR_380758 Gm29674 - - 10|10 D1 predicted gene, 29674 ncRNA 108169123 XR_001785071 Gm46946 - - 5 D|5 predicted gene, 46946 ncRNA 105246872 XM_011249366 Gm42078 - - 11 B2|11 predicted gene, 42078 protein-coding 100526550 NR_130334 ENSMUSG00000080504 Mir669d-2 mmu-mir-669d-2 - 2 A1|2 8.22 cM microRNA 669d-2 ncRNA 18295 Mm.4258 NM_008760 ENSMUSG00000021390 Ogn 3110079A16Rik|OG|OIF|SLRR3A|mimecan|mimican - 13|13 A5 osteoglycin protein-coding 73766 Mm.410841 4833420D23Rik - - 18|18 RIKEN cDNA 4833420D23 gene protein-coding 27650 D0Hgu16 - - - DNA segment, Human Genetics Unit 16 unknown 98224 AA589541 - - - expressed sequence AA589541 unknown 338417 Mm.270960 NM_001099742 ENSMUSG00000038801 Scgb1c1 Ryd5 - 7|7 F4 secretoglobin, family 1C, member 1 protein-coding 61190 D1Mit107 - - 1 70.19 cM DNA segment, Chr 1, Massachusetts Institute of Technology 107 unknown 21416 Mm.139815 NM_009333 ENSMUSG00000024985 Tcf7l2 TCF4B|TCF4E|Tcf-4|Tcf4 - 19 D2|19 51.59 cM transcription factor 7 like 2, T cell specific, HMG box protein-coding 218335 Mm.30099 NM_146047 ENSMUSG00000021610 Clptm1l C130052I12Rik|Crr9 - 13|13 C1 CLPTM1-like protein-coding 23951 mwfh - - - modifier of white forlock hypopigmentation unknown 619287 Mm.387961 NM_001033795 ENSMUSG00000071679 Rtl4 C230031A03Rik|Mar4|Zcchc16 - X|X F2 retrotransposon Gag like 4 protein-coding 105246645 Gm41903 - - X F2|X predicted gene, 41903 pseudo 140551 Atp5l-ps1 - - 7 C|7 34.38 cM ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 1 pseudo 100040875 Gm3015 - - 14 B|14 predicted gene 3015 protein-coding 75051 Mm.195726 NM_001077684 ENSMUSG00000070883 Ccdc173 4930525K21Rik|4930578N16Rik - 2|2 C2 coiled-coil domain containing 173 protein-coding 102637546 Mm.332001 XR_001784551 Gm13025 - - 4 D3|4 72.06 cM predicted gene 13025 ncRNA 19275 Mm.2902 NM_008985 ENSMUSG00000026204 Ptprn IA-2|mIA-A|mKIAA4064 - 1 C4|1 38.64 cM protein tyrosine phosphatase, receptor type, N protein-coding 319926 9630021D06Rik - - 6|6 RIKEN cDNA 9630021D06 gene protein-coding 105244354 XR_001783539 Gm11457 - - 2 H3|2 85.27 cM predicted gene 11457 ncRNA 72701 Mm.26479 NM_028326 ENSMUSG00000028358 Zfp618 2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1 - 4|4 B3 zinc finger protein 618 protein-coding 105243505 XR_871033 Gm39407 - - 9 E3.3|9 predicted gene, 39407 ncRNA 100417744 Gm18799 - - 1|1 B aldo-keto reductase family 1, member B8 pseudogene pseudo 67440 Mm.49826 NM_026157 ENSMUSG00000024234 Mtpap 0610027A18Rik|AW551379|Papd1 - 18|18 A1 mitochondrial poly(A) polymerase protein-coding 102640534 XR_381840 Gm36572 - - 12 E|12 predicted gene, 36572 ncRNA 71200 Mm.443973 NM_027717 ENSMUSG00000021791 Dydc2 4933428D01Rik - 14|14 B DPY30 domain containing 2 protein-coding 223754 Mm.28904 NM_145476 ENSMUSG00000051864 Tbc1d22a BC023106|D15Ertd781e - 15 E2|15 40.56 cM TBC1 domain family, member 22a protein-coding 225608 Mm.262320 NM_172628 ENSMUSG00000045629 Sh3tc2 D430044G18Rik - 18|18 E1 SH3 domain and tetratricopeptide repeats 2 protein-coding 102636743 Mm.404490 XR_877414 Gm33732 - - 18 D3|18 predicted gene, 33732 ncRNA 171263 Mm.377216 NM_134229 ENSMUSG00000046716 Vmn1r67 V1re10 - 7|7 A1 vomeronasal 1 receptor 67 protein-coding 13486 Mm.303534 NM_026106 ENSMUSG00000029265 Dr1 1700121L09Rik|Dr1l|NC2|NC2beta - 5 F|5 52.82 cM down-regulator of transcription 1 protein-coding 100043806 Gm9816 - - 16|16 C1.3 G protein pathway suppressor 1 pseudogene pseudo 406218 Mm.483059 NM_001002005 ENSMUSG00000058441 Panx2 - - 15 E3|15 pannexin 2 protein-coding 53133 Y11(II) - - - DNA segment, Y11(II) unknown 77892 6720418B01Rik - - 3|3 G3 RIKEN cDNA 6720418B01 gene protein-coding 100502808 Mm.483209 Gm19386 - - 10|10 32.87 cM predicted gene, 19386 unknown 105245418 XR_873209 Gm40876 - - 13 A3.2|13 predicted gene, 40876 ncRNA 21025 T(1;7)49H T49H - - reciprocal translocation, Chr 1 and 7, Harwell 49 other 545936 Mm.376228 NR_045096 ENSMUSG00000011350 Gm5893 EG545936|Gm477 - 7|7 A3 predicted gene 5893 pseudo 102634670 XR_876191 Gm32202 - - 16 C3.3|16 predicted gene, 32202 ncRNA 636697 Mm.480267 NM_001166732 ENSMUSG00000090794 Vmn1r60 EG636697|Gm7184 - 7 A1|7 vomeronasal 1 receptor 60 protein-coding 665124 Gm7503 EG665124 - 18|18 E3 ribosomal protein S8 pseudogene pseudo 67663 Mm.158168 NM_026300 ENSMUSG00000036921 Tex46 4930549C01Rik - 4|4 D3 testis expressed 46 protein-coding 18546 Mm.5023 NM_008791 ENSMUSG00000090223 Pcp4 P16Rimb19|Pcp-4|Pep19 - 16 C4|16 56.97 cM Purkinje cell protein 4 protein-coding 73307 Mm.399291 NR_045918 ENSMUSG00000085561 1700046C09Rik - - 11|11 A2 RIKEN cDNA 1700046C09 gene ncRNA 16728 Mm.260568 NM_008478 ENSMUSG00000031391 L1cam CD171|L1|N-CAM-L1|NCAM-L1 - X A7.3|X 37.43 cM L1 cell adhesion molecule protein-coding 97327 Mm.442019 C87102 - - - expressed sequence C87102 protein-coding 74586 4833420L08Rik - - 4|4 RIKEN cDNA 4833420L08 gene protein-coding 27677 D11Moh32 - - 11 59.01 cM DNA segment, Chr 11, KL Mohlke 32 unknown 213248 Mm.245572 XM_017319845 ENSMUSG00000104301 Wdr49 EG213248 - 3|3 E3 WD repeat domain 49 protein-coding 170760 Mm.272981 NM_133225 ENSMUSG00000026499 Acbd3 60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7 - 1 H4|1 84.46 cM acyl-Coenzyme A binding domain containing 3 protein-coding 101462 Mm.425362 AA537064 - - - expressed sequence AA537064 unknown 100503914 Selenok-ps4 Gm19961 - 13 B3|13 32.74 cM selenoprotein K, pseudogene 4 pseudo 73445 1700048C15Rik - - 7|7 RIKEN cDNA 1700048C15 gene protein-coding 102638124 XR_378445 Gm34762 - - 7 F1|7 predicted gene, 34762 ncRNA 69195 Mm.313244 NM_153776 ENSMUSG00000049036 Tmem121 2410008J05Rik|Hole - 12|12 F1 transmembrane protein 121 protein-coding 11770 Mm.582 NM_024406 ENSMUSG00000062515 Fabp4 422/aP2|AFABP|ALBP|ALBP/Ap2|Ap2|Lbpl|P15 - 3 A1|3 2.56 cM fatty acid binding protein 4, adipocyte protein-coding 102637569 XR_386251 Gm34345 - - 18 D3|18 predicted gene, 34345 ncRNA 102637331 XR_377809 Gm34170 - - 6 D1|6 predicted gene, 34170 ncRNA 62525 D11Mit142 - - 11 33.94 cM DNA segment, Chr 11, Massachusetts Institute of Technology 142 unknown 21055 T(10;18)21Ad T21Ad - - reciprocal translocation, Chr 10 and 18, Adler 21 other 21766 Mm.28371 NM_009357 ENSMUSG00000014748 Tex261 3110001O07Rik|AA409339|AI480706|AL033351|TEG-261 - 6 C3|6 35.94 cM testis expressed gene 261 protein-coding 208941 Mm.244277 XR_381238 Gm4755 F730043H23 - 12 A1.1|12 predicted gene 4755 ncRNA 62279 D19Mit39 - - 19 23.68 cM DNA segment, Chr 19, Massachusetts Institute of Technology 39 unknown 347724 Klra17b Ly49q2 - - killer cell lectin-like receptor, subfamily A, member 17B protein-coding 100042062 Gm15165 - - X|X C3 predicted gene 15165 pseudo 110537 Lfo1 Lfo-1|Lvfo-1 - - liver 40-50 thousand Mol. Wt. protein 1 protein-coding 105247253 XM_011250928 LOC105247253 - - 7 B3 peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 protein-coding 100035251 Hdlq39 - - - HDL QTL 39 unknown 21211 T(5;15)49Ad T49Ad - - reciprocal translocation, Chr 5 and 15, Adler 49 other 61675 D6Mit292 - - 6 69.91 cM DNA segment, Chr 6, Massachusetts Institute of Technology 292 unknown 105244301 XR_866746 Gm39938 - - 2 F1|2 predicted gene, 39938 ncRNA 665292 Vmn2r-ps115 EG665292 - 17|17 A3.2 vomeronasal 2, receptor, pseudogene 115 pseudo 100416104 Gm17917 - - 10|10 A4 nucleophosmin 1 pseudogene pseudo 52238 D15Ertd30e - - 15 10.25 cM DNA segment, Chr 15, ERATO Doi 30, expressed unknown 105245160 XR_871657 Gm40652 - - 10 B4|10 predicted gene, 40652 ncRNA 52086 D1Ertd84e - - 1 20.23 cM DNA segment, Chr 1, ERATO Doi 84, expressed unknown 666604 Gm13466 - - 2|2 B glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100503454 Gm16221 - - 10|10 38.63 cM 60S ribosomal protein L27-like pseudo 100035668 Svtms - - 13 59.18 cM survival time modifier of Sod2 unknown 66748 Mm.423014 NM_025744 ENSMUSG00000075302 Erich2 4933404M02Rik - 2|2 C2 glutamate rich 2 protein-coding 102636617 Gm21782 - - Y|Y predicted gene, 21782 protein-coding 100189605 Mm.457980 NM_001135127 ENSMUSG00000078673 Mup19 100039247|Gm12552|Mup11|Mup14|Mup17|Mup6|Mup8 - 4 B3|4 major urinary protein 19 protein-coding 100455 AW743053 - - - expressed sequence AW743053 unknown 667410 Mm.441522 NR_028061 Gm8615 EG667410 - 5|5 G3 glucosamine-6-phosphate deaminase 1 pseudogene pseudo 100047671 XM_003085107 Gm17783 isec2 - 16|16 B5 predicted gene, 17783 protein-coding 109280146 LOC109280146 Mm1343 - - VISTA enhancer mm1343 biological-region 100504484 Gm17695 - - 5|5 13.8 cM predicted gene, 17695 protein-coding 102634871 Mm.394679 XR_388091 Gm32352 Gm45748 - 8 E1|8 predicted gene, 32352 ncRNA 108167479 XM_017312468 Thap8p - - 7 B1 THAP domain containing 8 pseudogene pseudo 19094 Mm.91969 NM_011161 ENSMUSG00000053137 Mapk11 P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2 - 15|15 E3 mitogen-activated protein kinase 11 protein-coding 102634513 Mm.461722 XR_374899 ENSMUSG00000085681 Gm13982 - - 2 E5|2 59.23 cM predicted gene 13982 ncRNA 229055 Mm.103262 NM_177660 ENSMUSG00000069114 Zbtb10 4832414A18|AU021107|RINZF - 3|3 A1 zinc finger and BTB domain containing 10 protein-coding 432860 Mm.390718 NM_001256060 ENSMUSG00000096144 B020004C17Rik - - 14|14 C3 RIKEN cDNA B020004C17 gene protein-coding 231290 Mm.491387 NM_173403 ENSMUSG00000029219 Slc10a4 E130304D01 - 5|5 C3.2 solute carrier family 10 (sodium/bile acid cotransporter family), member 4 protein-coding 108168641 XM_017318850 LOC108168641 - - Y E X-linked lymphocyte-regulated protein PM1-like protein-coding 100502944 XM_011246786 Gm19465 - - 17 C|17 25.86 cM potassium channel subfamily K member 16-like pseudo 102639014 XR_375335 Gm35434 - - 2 H3|2 predicted gene, 35434 ncRNA 108527 Ms13-37 Ms13-Hf21 - - minisatellite 13-37 detected by M13 phage probe other 100042457 Mm.491517 Gm3853 - - 19 B|19 predicted gene 3853 unknown 100416191 Gm14562 - - X|X A2 predicted gene 14562 pseudo 241639 Mm.209784 NM_198029 ENSMUSG00000027356 Fermt1 5830467P10Rik|Kindlin-1 - 2|2 F2 fermitin family member 1 protein-coding 233067 Mm.23157 NM_175478 ENSMUSG00000036957 Lrfn3 A530045B06Rik|SALM4 - 7|7 B1 leucine rich repeat and fibronectin type III domain containing 3 protein-coding 102639132 XR_880149 ENSMUSG00000094091 Gm21885 - - 11 D|11 predicted gene, 21885 protein-coding 320540 Mm.253142 B330018G23Rik - - 13|13 RIKEN cDNA B330018G23 gene protein-coding 100035606 Egq4 - - - early growth QTL 4 unknown 18674 Mm.298 NM_133668 ENSMUSG00000061904 Slc25a3 5730556H19Rik|PTP|Phc - 10|10 C2 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 protein-coding 75299 Mm.444752 XR_001779763 4930547M16Rik - - 10|10 B1 RIKEN cDNA 4930547M16 gene unknown 105245375 XR_001780876 Gm40841 - - 13 A3.1|13 predicted gene, 40841 ncRNA 53684 D9Lws1 D9Rti1 - - DNA segment, Chr 9, S. Lewis 1 unknown 633269 Gm12877 - - 4|4 D2.2 predicted gene 12877 protein-coding 112152 Letohc1 - - 3 67.53 cM low ethanol consumption 1 unknown 114889 Mm.207061 NM_054068 ENSMUSG00000033080 Vsx1 CHX10-like - 2 G3|2 74.74 cM visual system homeobox 1 protein-coding 97540 C80258 - - - expressed sequence C80258 unknown 628746 XR_873606 Rybp-ps EG628746|Gm6910 - 13|13 B3 RING1 and YY1 binding protein, pseudogene pseudo 100035831 Lgdr2 - - 15 29.03 cM liver Gapd decay rate 2 unknown 74725 Mm.387798 NR_126084 ENSMUSG00000107217 4930524B17Rik - - 6|6 A2 RIKEN cDNA 4930524B17 gene ncRNA 109279943 LOC109279943 Mm394 - - VISTA enhancer mm394 biological-region 62516 D11Mit125 - - 11 65.37 cM DNA segment, Chr 11, Massachusetts Institute of Technology 125 unknown 54003 Mm.3959 NM_016743 ENSMUSG00000022454 Nell2 A330108N19Rik|R75516|mel91 - 15|15 E3 NEL-like 2 protein-coding 70417 Mm.297863 NM_001001979 ENSMUSG00000024593 Megf10 3000002B06Rik|Gm331 - 18|18 D3 multiple EGF-like-domains 10 protein-coding 108707 Mm.259547 NM_133998 ENSMUSG00000032977 Fam207a 1810008A18Rik|AI303072 - 10|10 C1 family with sequence similarity 207, member A protein-coding 100503232 Gm11207 - - 11|11 48.36 cM 39S ribosomal protein L27, mitochondrial-like pseudo 100039620 Rhox11-ps Gm14544 - X A3.3|X reproductive homeobox 11, pseudogene protein-coding 54160 Mm.39896 NM_017478 ENSMUSG00000025607 Copg2 AW227625|gamma-2-COP - 6|6 A3.3 coatomer protein complex, subunit gamma 2 protein-coding 320389 8030498J20Rik - - 16|16 RIKEN cDNA 8030498J20 gene protein-coding 108168674 XR_001782930 LOC108168674 - - - uncharacterized LOC108168674 ncRNA 58916 Mm.143804 NM_001033621 ENSMUSG00000024471 Myot 5530402I04Rik|Ttid - 18|18 B3 myotilin protein-coding 100418148 Gm19034 - - 14|14 A3 polymerase (RNA) III (DNA directed) polypeptide A pseudogene pseudo 22132 TTg(6;17)1N TTg1N - - reciprocal translocation, transgene elicited, Chr 6 and 17, NIH 1 other 100312504 Vmn1r-ps58 - - 7|7 A1 vomeronasal 1 receptor, pseudogene 58 pseudo 791293 Mm.446875 Gm9948 - - 15 B1|15 predicted gene 9948 unknown 665549 Gm7681 EG665549 - 9|9 F3 predicted gene 7681 pseudo 384525 Gm5321 EG384525 - 7|7 A1 ribosomal protein S18 pseudogene pseudo 110348 Evi7 - - - ecotropic viral integration site 7 protein-coding 108167607 Gm38051 - - 1 H3|1 60S ribosomal protein L6 pseudogene pseudo 100312545 Vmn1r-ps116 Gm11319 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 116 pseudo 97603 Mm.295780 C80406 - - - expressed sequence C80406 protein-coding 319449 F830002E08Rik - - 13|13 RIKEN cDNA F830002E08 gene protein-coding 102635804 XR_880713 Gm33051 - - 3 A3|3 predicted gene, 33051 ncRNA 100043818 Gm4669 - - 17|17 C predicted gene 4669 pseudo 320760 6720464F23Rik - - 1|1 RIKEN cDNA 6720464F23 gene protein-coding 212547 Mm.310573 NM_145972 ENSMUSG00000036208 Nepro - - 16|16 B4 nucleolus and neural progenitor protein protein-coding 102631599 XR_388043 Gm29896 - - 8 E1|8 predicted gene, 29896 ncRNA 105243024 XR_869859 Gm39065 - - 7 E3|7 predicted gene, 39065 ncRNA 110859 Cdc42l1 - - - cell division cycle 42 homolog (S. cerevisiae)-like 1 protein-coding 102640715 XR_374626 Gm38528 - - 2 C2|2 predicted gene, 38528 ncRNA 100043699 Mm.367189 Gm4593 - - 7 F3|7 predicted gene 4593 protein-coding 107131 Mm.482435 AI195470 - - - expressed sequence AI195470 unknown 102636758 Gm33740 - - 6|6 predicted gene, 33740 protein-coding 105247148 XR_881370 Gm42300 - - 4 C3|4 predicted gene, 42300 ncRNA 68175 Mm.158187 NM_026596 4930591A17Rik - - 2|2 H4 RIKEN cDNA 4930591A17 gene protein-coding 24128 Mm.3065 NM_011917 ENSMUSG00000027433 Xrn2 - - 2|2 G2 5'-3' exoribonuclease 2 protein-coding 78057 Mm.109380 NM_030031 ENSMUSG00000024088 4930583I09Rik - - 17|17 E1.1 RIKEN cDNA 4930583I09 gene protein-coding 105246350 Gm41650 - - 17|17 predicted gene, 41650 ncRNA 75082 4930519N06Rik - - 11|11 RIKEN cDNA 4930519N06 gene protein-coding 105243903 XR_865340 Gm39624 - - 1 B|1 predicted gene, 39624 ncRNA 116879 Pgia4 - - 8 19.38 cM proteoglycan induced arthritis 4 unknown 54447 Mm.491229 NM_018830 ENSMUSG00000024887 Asah2 AI585898 - 19|19 C1 N-acylsphingosine amidohydrolase 2 protein-coding 75405 XR_383959 1100001I12Rik - - 15|15 B3.1 RIKEN cDNA 1100001I12 gene ncRNA 67949 Mm.280311 NM_026472 ENSMUSG00000026377 Nifk AI852665|C130020J04Rik|Mki67ip - 1|1 E2.3 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 62555 D12Mit106 - - 12 13.74 cM DNA segment, Chr 12, Massachusetts Institute of Technology 106 unknown 17232 Mm.436621 NM_010782 ENSMUSG00000071361 Mcpt9 MMCP-1|MMCP-9|MMCP9 - 14 C3|14 28.19 cM mast cell protease 9 protein-coding 112089 Aeyo - - 5 50.64 cM age of eyelid opening unknown 102638909 XR_387455 Gm35356 - - 1 F|1 predicted gene, 35356 ncRNA 105844 Mm.17629 NM_130859 ENSMUSG00000033170 Card10 AI449026|Bimp1|Carma3 - 15|15 E1 caspase recruitment domain family, member 10 protein-coding 623849 Mm.335888 NR_003596 ENSMUSG00000091422 Gm6455 EG623849 - 5|5 A1 predicted gene 6455 pseudo 22415 Mm.159091 NM_009521 ENSMUSG00000000125 Wnt3 Int-4|Wnt-3 - 11 E1|11 67.5 cM wingless-type MMTV integration site family, member 3 protein-coding 245827 Mm.339363 NM_001029988 ENSMUSG00000055333 Fat2 EMI2|Fath2|Gm523|mKIAA0811 - 11|11 B1.3 FAT atypical cadherin 2 protein-coding 53607 Mm.386890 NM_015782 ENSMUSG00000061479 Snrpa C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A - 7|7 A3 small nuclear ribonucleoprotein polypeptide A protein-coding 109279977 LOC109279977 Mm667 - - VISTA enhancer mm667 biological-region 629860 Mm.390493 Ighv1-12 EG629860|Gm7011 - 12|12 F2 immunoglobulin heavy variable V1-12 other 60440 Mm.261140 NM_021792 ENSMUSG00000054072 Iigp1 2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6 - 18|18 D3 interferon inducible GTPase 1 protein-coding 17126 Mm.152699 NM_010754 ENSMUSG00000024563 Smad2 7120426M23Rik|Madh2|Madr2|Smad-2|mMad2 - 18 E3|18 51.42 cM SMAD family member 2 protein-coding 14447 Mm.436562 NM_008085 ENSMUSG00000061099 Gapdhs Gapd-s|Gapds - 7|7 B1 glyceraldehyde-3-phosphate dehydrogenase, spermatogenic protein-coding 100124586 Vmn2r-ps146 - - Y|Y A1 vomeronasal 2, receptor, pseudogene 146 pseudo 723889 NR_029879 ENSMUSG00000105200 Mir378a Mir378|Mirn378|mmu-mir-378|mmu-mir-378a - 18|18 E1 microRNA 378a ncRNA 100417586 Gm18699 - - 1|1 D cytidine 5'-triphosphate synthase 2 pseudogene pseudo 102636948 XR_874555 LOC102636948 - - 14 B uncharacterized LOC102636948 ncRNA 17863 Mm.52109 NM_010848 ENSMUSG00000019982 Myb AI550390|M16449|c-myb - 10 A3|10 9.75 cM myeloblastosis oncogene protein-coding 11728 Ang-ps1 - - 14 C1|14 angiogenin, ribonuclease A family, pseudogene 1 pseudo 104212 Tex5 - - - testis expressed gene 5 protein-coding 105244485 XR_867413 Gm40086 - - 3 F1|3 predicted gene, 40086 ncRNA 69082 Mm.27804 NM_026934 ENSMUSG00000027091 Zc3h15 1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4 - 2|2 D zinc finger CCCH-type containing 15 protein-coding 100038463 Mm.222517 Gm10859 - - - predicted gene 10859 unknown 257734 Mm.334149 NM_207571 ENSMUSG00000062873 Olfr1355 GA_x5J8B7W4DUT-12263-11330|MOR139-6 - 10|10 C1 olfactory receptor 1355 protein-coding 100035968 Bwtn4 WTN12.1 - 12 18.94 cM body weight at necropsy 4 unknown 66615 Mm.29087 NM_174874 ENSMUSG00000026280 Atg4b 2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1 - 1|1 D autophagy related 4B, cysteine peptidase protein-coding 546487 Olfr766-ps1 - - 10|10 D3 olfactory receptor 766, pseudogene 1 pseudo 243538 Mm.386876 NM_173775 ENSMUSG00000048794 Cfap100 AW048498|C030041G11Rik|C230069K22Rik|Ccdc37 - 6|6 D1 cilia and flagella associated protein 100 protein-coding 77304 9430068D22Rik - - 15|15 RIKEN cDNA 9430068D22 gene protein-coding 244495 Mm.485331 NM_001195687 ENSMUSG00000094443 Sgo2b EG244495|Gm4975|Sgol2b - 8|8 B3.1 shugoshin 2B protein-coding 666516 Gm8143 EG666516 - 6|6 B3 quinolinate phosphoribosyltransferase pseudogene pseudo 102632420 XR_879217 Gm16118 - - 8 E1|8 61.42 cM predicted gene 16118 ncRNA 27795 D2Dcr3 - - - DNA segment, Chr 2, Derry C. Roopenian 3 unknown 102635194 XR_378710 Gm32594 - - 8 A1.1|8 predicted gene, 32594 ncRNA 61801 D2Mit400 - - 2 66.52 cM DNA segment, Chr 2, Massachusetts Institute of Technology 400 unknown 16510 Mm.4489 NM_010600 ENSMUSG00000058248 Kcnh1 EAG1|Kv10.1|M-eag - 1|1 H6 potassium voltage-gated channel, subfamily H (eag-related), member 1 protein-coding 112074 Bpq5 - - 6 77.7 cM blood pressure QTL 5 unknown 108168779 LOC108168779 - - 2 E2 60S ribosomal protein L29 pseudogene pseudo 232156 Mm.333189 NM_001166067 ENSMUSG00000068323 Slc4a5 C330006M16|C330016K18Rik - 6|6 C3 solute carrier family 4, sodium bicarbonate cotransporter, member 5 protein-coding 75498 1700008A07Rik - - 14|14 RIKEN cDNA 1700008A07 gene protein-coding 74868 Mm.293754 NM_175212 ENSMUSG00000062373 Tmem65 2610029O13Rik|4930438D12Rik - 15|15 D1 transmembrane protein 65 protein-coding 65946 AA273854 - - - cDNA sequence AA273854 protein-coding 109237 Mm.491526 A030007N12Rik - - 15|15 RIKEN cDNA A030007N12 gene ncRNA 100042305 Gm12396 - - 4|4 A5 presenilin enhancer 2 homolog pseudogene pseudo 107575 Tcrg-C3 Gm17356|TRGC3 - 13|13 A2 T cell receptor gamma, constant 3 other 97025 C87129 - - - expressed sequence C87129 unknown 667010 Gm8419 EG667010 - 1|1 C1.1 predicted gene 8419 pseudo 319293 Mm.246657 NM_175688 A530099J19Rik Karma - 13|13 A2 RIKEN cDNA A530099J19 gene protein-coding 100126033 Mm.28465 Gm10366 - - - predicted gene 10366 unknown 434701 Mm.469850 NM_001104578 ENSMUSG00000092111 Vmn2r113 EG434701|V2Rp7 - 17|17 A3.3 vomeronasal 2, receptor 113 protein-coding 101943 Mm.236123 NM_133953 ENSMUSG00000033732 Sf3b3 1810061H24Rik|5730409A01Rik|AA409318|D8Ertd633e|RSE1|SAP130|mKIAA0017 - 8 E1|8 57.73 cM splicing factor 3b, subunit 3 protein-coding 629378 Mm.491123 NM_001081655 ENSMUSG00000078794 Dact3 EG666671|naa-3 - 7|7 A2 dishevelled-binding antagonist of beta-catenin 3 protein-coding 545180 Mm.373756 NR_131135 ENSMUSG00000095369 Gm21859 - - 16|16 A1 predicted gene, 21859 ncRNA 68499 Mm.333183 NM_026744 ENSMUSG00000030037 Mrpl53 1110007K17Rik - 6|6 C3 mitochondrial ribosomal protein L53 protein-coding 100034942 Lppl1 - - - LPS-induced pulmonary PMN locus 1 unknown 105188 Mm.437139 AI481207 - - - expressed sequence AI481207 unknown 103534 Mm.86759 NM_145926 ENSMUSG00000036620 Mgat4b AA407995|GnTIVb - 11|11 B1.3 mannoside acetylglucosaminyltransferase 4, isoenzyme B protein-coding 67261 Mm.461781 NM_026059 ENSMUSG00000043833 2900005J15Rik - - 5|5 A3 RIKEN cDNA 2900005J15 gene ncRNA 102639176 Gm35547 - - 17|17 predicted gene, 35547 ncRNA 100124689 Trbv24 Tcrb|Tcrb-V17|Tcrb-V3.2|VB17a(cz) - 6 B1|6 19.32 cM T cell receptor beta, variable 24 other 73830 Mm.29714 NM_028659 ENSMUSG00000053565 Eif3k 1200009C21Rik|Eif3s12 - 7|7 B1 eukaryotic translation initiation factor 3, subunit K protein-coding 237615 Mm.440177 NM_172790 ENSMUSG00000014498 Ankrd52 6430544C07|G431002C21Rik - 10|10 D3 ankyrin repeat domain 52 protein-coding 246700 Mm.82820 NM_145157 ENSMUSG00000050645 Defb19 BD-19|Defb24|Tdl|mBD-19 - 2|2 H1 defensin beta 19 protein-coding 105244759 XR_872513 Gm40312 - - 12 A1.2|12 predicted gene, 40312 ncRNA 21897 Mm.273024 NM_030682 ENSMUSG00000044827 Tlr1 - - 5 C3.1|5 33.53 cM toll-like receptor 1 protein-coding 108598 Iap3ra11 - - - intracisternal A-type particle, U3 region, SINE repeat a-11 other 668062 Gm8955 EG668062 - 3|3 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 109473 Lore6 - - - loss of righting induced by ethanol 6 unknown 100416325 Gm16148 - - 10|10 A1 ribosomal protein S2 pseudogene pseudo 100035801 Hipp4 HipV15a - - hippocampal weight 4 unknown 20750 Mm.288474 NM_009263 ENSMUSG00000029304 Spp1 2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1 - 5 E5|5 50.68 cM secreted phosphoprotein 1 protein-coding 216578 Mm.470599 NM_172555 ENSMUSG00000020273 Papolg 9630006B20Rik - 11|11 A3.2 poly(A) polymerase gamma protein-coding 100504673 Gm20345 - - 7|7 A1 vomeronasal 2, receptor 37 pseudogene pseudo 280645 Mm.471661 NM_172124 ENSMUSG00000026156 B3gat2 GlcAT-S|Glcats - 1|1 A5 beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) protein-coding 58992 Mm.42224 NM_021489 ENSMUSG00000021492 F12 FXII|HAF - 13|13 B1 coagulation factor XII (Hageman factor) protein-coding 27701 D1Dau17 - - - DNA segment, Chr 1, DA Underhill 17 unknown 105242910 XR_881960 Gm38989 - - 7 B2|7 predicted gene, 38989 ncRNA 62480 D10Mit103 - - 10 73.57 cM DNA segment, Chr 10, Massachusetts Institute of Technology 103 unknown 105246269 XR_876775 Gm41576 - - 17 B1|17 predicted gene, 41576 ncRNA 112027 Lwq3 - - - liver weight QTL 3 unknown 102633196 XR_385757 Gm31084 - - 17 E2|17 predicted gene, 31084 ncRNA 66525 Mm.167913 NM_025616 ENSMUSG00000003438 Timm50 2810403L02Rik|AU015082|TIM50L - 7|7 A3 translocase of inner mitochondrial membrane 50 protein-coding 93690 Mm.444976 NM_053107 ENSMUSG00000041907 Gpr45 9230112G11Rik|AW046772 - 1|1 B G protein-coupled receptor 45 protein-coding 230904 Mm.262287 NM_176848 ENSMUSG00000041556 Fbxo2 FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4 - 4 E2|4 78.68 cM F-box protein 2 protein-coding 259084 Mm.377829 NM_147080 ENSMUSG00000073947 Olfr615 MOR19-2 - 7|7 E3 olfactory receptor 615 protein-coding 100043463 Gm14283 - - 2|2 F1 predicted gene 14283 pseudo 75140 Mm.378496 NM_029181 ENSMUSG00000067909 Slxl1 4930527E24Rik - X|X A5 Slx-like 1 protein-coding 74690 Mm.159300 XR_375859 4930459I23Rik - - 3|3 F2.1 RIKEN cDNA 4930459I23 gene ncRNA 331360 Mm.490244 NR_003547 Zf12 - - - Zf12 pseudogene pseudo 100036349 Mcvq2 - - 11 7.3 cM mean corpuscular volume QTL 2 unknown 238023 Mm.275130 NM_001001333 ENSMUSG00000039307 Hexdc BC069960 - 11|11 E2 hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing protein-coding 329559 Mm.330776 NM_199027 ENSMUSG00000039834 Zfp335 1810045J01Rik|NIF-1|Nif1|Znf335 - 2|2 H3 zinc finger protein 335 protein-coding 109648312 LOC109648312 - - - Runx1 +23 hematopoietic stem cell enhancer biological-region 60805 D4Mit29 - - 4 48.18 cM DNA segment, Chr 4, Massachusetts Institute of Technology 29 unknown 108168226 XM_017316818 Gm46504 - - 15 F3|15 predicted gene, 46504 protein-coding 100044526 XR_373585 Gm17764 - - 1|1 C5 28S ribosomal protein S14, mitochondrial-like pseudo 75877 Mm.402094 NR_131035 ENSMUSG00000111234 4930591E09Rik - - 10|10 B1 RIKEN cDNA 4930591E09 gene ncRNA 105246335 Gm41636 - - 17|17 predicted gene, 41636 ncRNA 100526517 NR_037219 ENSMUSG00000093227 Mir1251 mir-1251|mmu-mir-1251 - 10 C2|10 46.73 cM microRNA 1251 ncRNA 104193 Ce1 Ce-1 - - catalase activity, liver protein-coding 105244736 XR_868387 Gm40293 Gm43453 - 5 B3|5 predicted gene, 40293 ncRNA 19056 Mm.274432 NM_008914 ENSMUSG00000021816 Ppp3cb 1110063J16Rik|Calnb|CnAbeta|Cnab - 14|14 A3 protein phosphatase 3, catalytic subunit, beta isoform protein-coding 23938 Mm.325746 NM_011840 ENSMUSG00000058444 Map2k5 AI324775|AI428457|MEK5|Mapkk5|Prkmk5 - 9|9 B-C mitogen-activated protein kinase kinase 5 protein-coding 108168177 XR_001781395 Gm46467 - - 14 A1|14 predicted gene, 46467 ncRNA 234373 Mm.284505 NM_172755 ENSMUSG00000036054 Sugp2 Sfrs14|Srsf14|mKIAA0365 - 8|8 B3.3 SURP and G patch domain containing 2 protein-coding 100416117 Gm17925 - - 11|11 E1 nucleophosmin 1 pseudogene pseudo 102633603 XR_001784769 Gm31388 - - 5 A1|5 predicted gene, 31388 ncRNA 62812 D14Mit189 - - 14 20.81 cM DNA segment, Chr 14, Massachusetts Institute of Technology 189 unknown 100042435 Gm20918 - - Y|Y predicted gene, 20918 protein-coding 17463 Mm.18347 NM_010817 ENSMUSG00000039067 Psmd7 AW107203|Mov-34|Mov34 - 8 D3|8 54.38 cM proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 protein-coding 20389 Mm.24040 NM_011359 ENSMUSG00000022097 Sftpc Bricd6|SP-C|SP5|SPC|Sftp-2|Sftp2|pro-SpC - 14 D2|14 36.32 cM surfactant associated protein C protein-coding 104940697 Mm.101636 NR_130904 ENSMUSG00000099784 Dalir Dali|Gm28525 - 1 B|1 DNMT1 associated long intergenic non-coding RNA ncRNA 257835 Gm5027 EG257835|GA_x5J8B7W3UM0-970645-971221 - 11 B1.3|11 olfactory receptor GA_x5J8B7W3UM0-970645-971221 pseudo 102639189 Gm35555 - - 3|3 predicted gene, 35555 ncRNA 62775 D16Mit145 - - - DNA segment, Chr 16, Massachusetts Institute of Technology 145 unknown 240614 Mm.125503 NM_177721 ENSMUSG00000074909 Ranbp6 C630001B19 - 19|19 C1 RAN binding protein 6 protein-coding 223332 Mm.321371 NM_198024 ENSMUSG00000048424 Ranbp3l C130037N17Rik - 15|15 A1 RAN binding protein 3-like protein-coding 319909 Mm.41113 NM_001126490 ENSMUSG00000074766 Ism1 5430433G21Rik|Ism - 2|2 F3 isthmin 1, angiogenesis inhibitor protein-coding 105244628 Gm40209 - - 4|4 predicted gene, 40209 ncRNA 109280134 LOC109280134 Mm1307 - - VISTA enhancer mm1307 biological-region 105247288 XR_882342 ENSMUSG00000099619 Gm28300 CH36-217G15.1|CH36-24K7.3|CH36-472P4.2 - Y E|Y predicted gene 28300 ncRNA 791080 NR_030436 ENSMUSG00000076453 Mir759 Mirn759|mir-759|mmu-mir-759 - 14 D3|14 microRNA 759 ncRNA 225995 Mm.28101 NM_177640 ENSMUSG00000047044 D030056L22Rik - - 19|19 B RIKEN cDNA D030056L22 gene protein-coding 360096 D17Jcs54 - - - DNA segment, Chr 17, John C. Schimenti 54 unknown 100499517 NR_037233 ENSMUSG00000093351 Mir3072 mir-3072|mmu-mir-3072 - 12 F1|12 60.56 cM microRNA 3072 ncRNA 105244196 Gm39846 - - 2|2 predicted gene, 39846 ncRNA 109279953 LOC109279953 Mm412 - - VISTA enhancer mm412 biological-region 62623 D13Mit203 - - 13 53.23 cM DNA segment, Chr 13, Massachusetts Institute of Technology 203 unknown 100035710 Lbm11 - - - lean body mass 11 unknown 71682 Mm.122698 NM_175173 ENSMUSG00000046991 Wdr27 0610012K18Rik - 17|17 A2 WD repeat domain 27 protein-coding 67742 Mm.131406 NM_023380 ENSMUSG00000022876 Samsn1 4930571B16Rik|930571B16Rik|Hacs1|SLy2 - 16|16 C3.1 SAM domain, SH3 domain and nuclear localization signals, 1 protein-coding 102639331 XR_376055 Gm35667 Gm43053 - 3 G2|3 predicted gene, 35667 ncRNA 110120402 LOC110120402 - - - VISTA enhancer mm122 biological-region 77646 Mm.159965 C030043A13Rik - - 4|4 RIKEN cDNA C030043A13 gene protein-coding 666718 Gm8254 EG666718 - 8|8 A4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 69581 Mm.168257 NM_133955 ENSMUSG00000039960 Rhou 2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K - 8|8 E1 ras homolog family member U protein-coding 105243725 XR_878253 Gm39538 - - X F1|X predicted gene, 39538 ncRNA 545652 Mm.457965 NM_001085533 ENSMUSG00000099518 Gm13275 - - 4 C4|4 predicted gene 13275 protein-coding 433751 Mm.224312 NR_131914 ENSMUSG00000066060 Gm12866 - - 4 D2.1|4 predicted gene 12866 ncRNA 100035248 Nhdlq9 - - - non-HDL QTL 9 unknown 100503393 Mm.402891 NR_045323 ENSMUSG00000084904 Gm14827 - - X C3|X 41.56 cM predicted gene 14827 ncRNA 100038378 Mm.387075 NR_045282 ENSMUSG00000072884 Gm10433 - - 12 E|12 predicted gene 10433 ncRNA 105244775 XR_868522 Gm40327 - - 5 G1.1|5 predicted gene, 40327 ncRNA 433840 Gm15730 EG433840 - 5 A1|5 predicted gene 15730 pseudo 70850 4921504P05Rik - - - RIKEN cDNA 4921504P05 gene protein-coding 100416959 Gm18337 - - 12|12 A1.1 tudor domain containing 6 pseudogene pseudo 102632878 XR_001782652 Gm30840 - - 19 A|19 predicted gene, 30840 ncRNA 102467490 n-TCgca8 n-Tc8 - 6 B2.3|6 nuclear encoded tRNA cysteine 8 (anticodon GCA) tRNA 102465771 NR_106129 ENSMUSG00000098397 Mir7669 Gm27996|mmu-mir-7669 - 3|3 F1 microRNA 7669 ncRNA 100505380 Gm12196 - - 11 B1.3|11 30.52 cM high mobility group nucleosomal binding domain 2 pseudogene pseudo 66175 Mm.220895 NM_181390 ENSMUSG00000042485 Mustn1 1110028G01Rik|Mustang - 14|14 B musculoskeletal, embryonic nuclear protein 1 protein-coding 236866 Olfr1326-ps1 GA_x6K02T2QD78-226493-227257|MOR267-19 - X|X A7.3 olfactory receptor 1326, pseudogene 1 pseudo 62353 D1Mit315 - - 1 83.48 cM DNA segment, Chr 1, Massachusetts Institute of Technology 315 unknown 353025 Mm.194428 NM_178278 ENSMUSG00000035694 Caps2 D630005B03Rik - 10|10 D2 calcyphosphine 2 protein-coding 209588 Mm.69553 NM_145373 ENSMUSG00000025165 Sectm1a BC010462 - 11|11 E2 secreted and transmembrane 1A protein-coding 100040771 XR_001781234 Gm2959 - - 14|14 B predicted gene 2959 protein-coding 665889 Gm7841 EG665889 - X|X E3 predicted gene 7841 pseudo 384411 Igkv12-89 Gm16905|fl12 - 6|6 C1 immunoglobulin kappa chain variable 12-89 other 112009 Lbw7 - - 1 76.73 cM lupus NZB x NZW 7 unknown 574428 Mm.425692 NM_001029929 ENSMUSG00000040829 Zmynd15 - - 11|11 B3 zinc finger, MYND-type containing 15 protein-coding 15446 Mm.18832 NM_008278 ENSMUSG00000031613 Hpgd 15-PGDH|AV026552 - 8|8 B2 hydroxyprostaglandin dehydrogenase 15 (NAD) protein-coding 62615 D13Mit166 - - 13 26.0 cM DNA segment, Chr 13, Massachusetts Institute of Technology 166 unknown 56077 Mm.153695 NM_019505 ENSMUSG00000000276 Dgke C87606|DAGK6|DGK - 11|11 C diacylglycerol kinase, epsilon protein-coding 621562 Gm6240 EG621562 - 7 D3|7 predicted gene 6240 pseudo 102640363 XR_376073 Gm36443 - - 3 G3|3 predicted gene, 36443 ncRNA 102638746 XR_375723 Gm35236 - - 3 E1|3 predicted gene, 35236 ncRNA 117072 T2dm2 - - 19 50.72 cM type 2 diabetes mellitus 2 unknown 100035216 Mfiq5 - - - M16 feed intake QTL 5 unknown 77788 A430110A21Rik - - - RIKEN cDNA A430110A21 gene protein-coding 319767 Mm.252339 NM_176999 ENSMUSG00000055415 Atp10b 5930426O13Rik|9030605H24Rik - 11|11 A5 ATPase, class V, type 10B protein-coding 58540 D13Die39 - - 13 52.91 cM DNA segment, Chr 13, Dietrich 39 unknown 73821 Mm.84177 4930401A07Rik - - 10|10 RIKEN cDNA 4930401A07 gene protein-coding 15387 Mm.142872 NM_025279 ENSMUSG00000021546 Hnrnpk Hnrpk|KBBP|NOVA - 13|13 B1 heterogeneous nuclear ribonucleoprotein K protein-coding 20844 Mm.273174 NM_011484 ENSMUSG00000026718 Stam STAM1 - 2|2 A1-A2 signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 protein-coding 105245717 XR_874501 Gm41125 - - 14 B|14 predicted gene, 41125 ncRNA 668108 Mm.429088 NR_030719 Gm8979 EG668108|Gm21884 - 7|7 E3 very large inducible GTPase 1 pseudogene pseudo 14156 Mm.2952 NM_007999 ENSMUSG00000024742 Fen1 AW538437|FEN-1 - 19|19 A flap structure specific endonuclease 1 protein-coding 100036316 Htas6 - - - hypothermia due to alcohol sensitivity 6 unknown 384813 Mm.383319 NM_001025240 ENSMUSG00000050190 Gm5346 EG384813 - 8|8 A4 predicted gene 5346 protein-coding 100042566 Gm11591 - - 1|1 C2 predicted gene 11591 pseudo 52296 D1Ertd399e - - 1 47.76 cM DNA segment, Chr 1, ERATO Doi 399, expressed unknown 329917 4632401L01 - - 4|4 D1 uncharacterized protein 4632401L01 protein-coding 111737 Mpmv11 Mpmv-11 - - modified polytropic murine leukemia virus 11 other 100417669 Gm18750 - - 1|1 B elongation factor RNA polymerase II 2 pseudogene pseudo 102638699 XR_388959 Gm35198 - - 11 D|11 predicted gene, 35198 ncRNA 62246 D17Mit92 - - 17 44.66 cM DNA segment, Chr 17, Massachusetts Institute of Technology 92 unknown 108138 Mm.37531 NM_028012 ENSMUSG00000021615 Xrcc4 2310057B22Rik|AW413319|AW545101 - 13|13 C3 X-ray repair complementing defective repair in Chinese hamster cells 4 protein-coding 102635458 XR_373307 Gm32790 - - 1 B|1 predicted gene, 32790 ncRNA 732521 XM_017318993 Gt(pU21)140Imeg Ayu21-140|GtAyu21-140 - - gene trap 140, Institute of Molecular Embryology and Genetics protein-coding 85063 D4Mit49 - - 4 79.08 cM DNA segment, Chr 4, Massachusetts Institute of Technology 49 unknown 100093691 Trnag-acc - - - transfer RNA glycine (anticodon ACC) tRNA 71706 Mm.153218 NM_027872 ENSMUSG00000029650 Slc46a3 1200006F02Rik - 5|5 G3 solute carrier family 46, member 3 protein-coding 258875 Mm.223290 NM_146875 ENSMUSG00000096427 Olfr895 MOR170-1 - 9|9 A5.1 olfactory receptor 895 protein-coding 105242847 XR_881809 Gm38944 Gm45068 - 7 A1|7 predicted gene, 38944 ncRNA 105245788 Gm41180 - - 14|14 predicted gene, 41180 ncRNA 105244113 XR_866116 Gm39786 - - 2 B|2 predicted gene, 39786 ncRNA 102641332 LOC102641332 - - - GTP-binding nuclear protein Ran protein-coding 107466 Pcas - - - passive cutaneous anaphylaxis protein-coding 100035140 Erars1 - - 2 82.95 cM erosive arthritis susceptibility 1 unknown 67392 Mm.390641 NM_026127 ENSMUSG00000062822 4833420G17Rik 2210017J06Rik|5730533D17Rik|AW107518|C85193 - 13|13 D2.3 RIKEN cDNA 4833420G17 gene protein-coding 105442 Mm.474884 B130052P14Rik AA793003 - - RIKEN cDNA B130052P14 gene protein-coding 623647 Gm12221 - - 11|11 B1.3 Sdccag3 pseudogene pseudo 114755 Sle12 - - 10 70.36 cM systematic lupus erythematosus susceptibility 12 unknown 12398 Mm.194339 NM_009824 ENSMUSG00000006362 Cbfa2t3 A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2 - 8|8 E1 core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human) protein-coding 73375 Mm.396227 NR_130155 ENSMUSG00000086007 1700057H21Rik - - 2|2 C1.1 RIKEN cDNA 1700057H21 gene ncRNA 112425 Lrnx5 - - - learning contextual 5 unknown 13807 Mm.3913 NM_013509 ENSMUSG00000004267 Eno2 AI837106|D6Ertd375e|Eno-2|NSE - 6 F2|6 59.17 cM enolase 2, gamma neuronal protein-coding 100043836 Mm.296883 NM_001198871 ENSMUSG00000094053 Scgb2b7 Abpbg7|Gm4684 - 7 B1|7 secretoglobin, family 2B, member 7 protein-coding 258369 Mm.377461 NM_146372 ENSMUSG00000049280 Olfr509 MOR267-14 - 7|7 E3 olfactory receptor 509 protein-coding 78217 Mm.160057 NM_030055 ENSMUSG00000026963 Tmem210 4930571C24Rik - 2|2 A3 transmembrane protein 210 protein-coding 53149 579J12Sp6 - - - DNA segment, 579J12Sp6 unknown 102467349 n-TKctt21 n-Tk21 - 10 C1|10 nuclear encoded tRNA lysine 21 (anticodon TTT) tRNA 71471 8430422J01Rik - - 3|3 RIKEN cDNA 8430422J01 gene protein-coding 100043459 Gm10241 - - 16|16 A3 SMT3 suppressor of mif two 3 homolog 2 pseudogene pseudo 13050 cx - - - cerebellum ataxia unknown 408061 Mm.261802 XR_877262 BC051408 - - 18|18 A2 cDNA sequence BC051408 ncRNA 404472 Olfr1081-ps1 MOR191-4_p - 2|2 D olfactory receptor 1081, pseudogene 1 pseudo 414126 Mm.214325 XR_873202 G630018N14Rik - - 13|13 A3.2 RIKEN cDNA G630018N14 gene ncRNA 75019 Mm.318775 NM_029145 ENSMUSG00000021872 Rnase10 4930474F22Rik|Rah1 - 14|14 C1 ribonuclease, RNase A family, 10 (non-active) protein-coding 108261 Gapdh-ps11 Gapd-ps11|domes19 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 11 pseudo 100418172 Gm15967 - - 19|19 A Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 pseudogene pseudo 105242732 XR_869341 Gm38871 - - 6 E1|6 predicted gene, 38871 ncRNA 53008 O20T7 - - - DNA segment, O20T7 unknown 108168432 Gm46669 - - X A5|X multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 52519 D18Ertd693e - - 18 4.91 cM DNA segment, Chr 18, ERATO Doi 693, expressed unknown 667135 Mm.480262 NM_001166738 ENSMUSG00000096903 Vmn1r104 EG667135|Gm8477 - 7|7 A3 vomeronasal 1 receptor 104 protein-coding 100036320 Pbwg17 - - - postnatal body weight growth 17 unknown 101055875 Gm29610 - - 1|1 predicted gene 29610 pseudo 628006 Rpl18a-ps2 EG628006|Gm6824 - 6 C1|6 ribosomal protein L18A, pseudogene 2 pseudo 105246894 XR_880347 Gm11753 - - 11 E2|11 83.35 cM predicted gene 11753 ncRNA 100417927 Gm18903 - - 10|10 A4 predicted gene, 18903 pseudo 100504488 XR_001781337 Gm3164 100041151 - 14 A1|14 2.4 cM predicted gene 3164 unknown 102638640 XR_381275 Gm35155 - - 12 A1.1|12 predicted gene, 35155 ncRNA 108167551 XR_001778647 Gm46050 - - 8 D3|8 predicted gene, 46050 ncRNA 111785 Hsd3b - - - hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase cluster other 105242693 XR_869190 Gm38841 - - 6 C3|6 predicted gene, 38841 ncRNA 546038 Mm.99206 NM_001034905 ENSMUSG00000059463 Spag11b EG546038|Ep2c/h|Spag11c/h - 8|8 A1.3 sperm associated antigen 11B protein-coding 105868 AI528492 - - - expressed sequence AI528492 unknown 259001 Mm.223388 NM_146999 ENSMUSG00000090951 Olfr181 MOR184-4 - 16|16 C1.3 olfactory receptor 181 protein-coding 102635755 Gm33013 - - 3|3 predicted gene, 33013 ncRNA 110374 Tpm3-rs6 - - - tropomyosin 3, related sequence 6 protein-coding 233532 Mm.43977 NM_001081267 ENSMUSG00000035623 Rsf1 4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325 - 7|7 E1 remodeling and spacing factor 1 protein-coding 102638938 XR_881949 Gm35378 - - 7 B2|7 predicted gene, 35378 ncRNA 100313531 Mm.405189 NR_030769 ENSMUSG00000086509 Nkx2-2os Gm14112|Nkx2-2as|Nkx2.2AS - 2 G2|2 NK2 homeobox 2, opposite strand ncRNA 666638 Gm8207 EG666638 - 14|14 C1 predicted gene 8207 protein-coding 102637045 Gm33954 - - Y|Y predicted gene, 33954 ncRNA 102631518 Mm.421161 NR_155290 Gm38438 - - X A6|X predicted gene, 38438 ncRNA 102636033 XR_382691 Gm33217 - - 13 C3|13 predicted gene, 33217 ncRNA 100041519 Gm3385 - - 17|17 A3.2 predicted gene 3385 protein-coding 105246723 XR_878597 Gm41966 - - 1 G1|1 predicted gene, 41966 ncRNA 622116 Mm.206555 Gm6287 EG622116 - 5|5 G2 predicted gene 6287 unknown 16840 Mm.46561 NM_010701 ENSMUSG00000022025 Cnmd Bricd3|ChM-I|Chmd|Lect1 - 14|14 D3 chondromodulin protein-coding 116452 Asm2 - - - autoimmune sialadenitis in MRL mice 2 unknown 67023 Mm.41890 NM_025917 ENSMUSG00000002395 Use1 2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31 - 8|8 B3.3 unconventional SNARE in the ER 1 homolog (S. cerevisiae) protein-coding 62095 D11Mit51 - - 11 21.96 cM DNA segment, Chr 11, Massachusetts Institute of Technology 51 unknown 105242563 XR_868692 Gm38740 - - 5 G2|5 predicted gene, 38740 ncRNA 102635636 Gm32924 - - 16|16 predicted gene, 32924 ncRNA 625446 Gm6586 EG625446 - 5|5 A1 predicted gene 6586 pseudo 102633272 XR_001778842 Gm31136 - - 1 A5|1 predicted gene, 31136 ncRNA 227659 Mm.41203 NM_172659 ENSMUSG00000036067 Slc2a6 A330096C23|F630103L12Rik|Glut6|Glut9 - 2|2 A3 solute carrier family 2 (facilitated glucose transporter), member 6 protein-coding 100417577 Gm18695 - - X|X A5 serine/arginine repetitive matrix 1 pseudogene pseudo 19249 Mm.3414 NM_011204 ENSMUSG00000034573 Ptpn13 AI324989|PTP-BL|PTPL1|Ptpri|RIP - 5 E5|5 50.43 cM protein tyrosine phosphatase, non-receptor type 13 protein-coding 622811 Gm12418 - - 4|4 C4 dimethyladenosine transferase pseudogene pseudo 112338 Carfhg1 Carf1|Q5Ucd1-fp - - carcass fat in high growth mice 1 unknown 101739 Mm.105331 NM_133948 ENSMUSG00000028484 Psip1 AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2 - 4|4 C3 PC4 and SFRS1 interacting protein 1 protein-coding 71619 Mm.98122 NM_027843 ENSMUSG00000098207 Arl14 9130014L17Rik|Arf7 - 3|3 E1 ADP-ribosylation factor-like 14 protein-coding 18163 Mm.321648 NM_008729 ENSMUSG00000022240 Ctnnd2 Catnd2|Nprap|neurojugin - 15|15 B2 catenin (cadherin associated protein), delta 2 protein-coding 85234 D16Mit205 - - 16 57.43 cM DNA Segment, Chr 16, Massachusetts Institute of Technology 205 unknown 497266 LOC497266 - - - uncharacterized LOC497266 unknown 75751 Mm.27546 NM_024267 ENSMUSG00000002319 Ipo4 8430408O15Rik|AA409693|Imp4a|RanBP4 - 14 C3|14 28.19 cM importin 4 protein-coding 100534366 Gm21045 - - 6|6 C3 predicted gene, 21045 pseudo 635651 Gm20763 - - 13 D2.3|13 predicted gene, 20763 pseudo 110014 Tsp3 - - - tumor suppressor region 3 protein-coding 434375 Gm5612 EG434375|Map1lc3-ps - 9|9 A2 microtubule-associated protein 1 light chain 3 pseudogene pseudo 76895 Mm.197387 NM_029791 ENSMUSG00000037933 Bicd2 - - 13|13 A5 BICD cargo adaptor 2 protein-coding 497104 Ang-ps3 - - 14 C1|14 angiogenin, ribonuclease A family, pseudogene 3 pseudo 60869 D6Mit63 - - 6 53.05 cM DNA segment, Chr 6, Massachusetts Institute of Technology 63 unknown 73405 Mm.82696 XR_035225 1700055D18Rik - - 4|4 B1 RIKEN cDNA 1700055D18 gene unknown 105245652 Gm41078 - - 13|13 predicted gene, 41078 pseudo 360053 D17Jcs65 - - - DNA segment, Chr 17, John C. Schimenti 65 unknown 110474 Tcra-V7.1 - - - T cell receptor alpha, variable 7.1 other 68371 Mm.261389 NM_026701 ENSMUSG00000112129 Pbld1 0610038K03Rik|Mawbp|Pbld - 10|10 B4 phenazine biosynthesis-like protein domain containing 1 protein-coding 77698 9230110I02Rik - - 3|3 F2.1 RIKEN cDNA 9230110I02 gene unknown 105246464 XR_877476 Gm41750 - - 18 E1|18 predicted gene, 41750 ncRNA 105246332 Gm41633 - - 17|17 predicted gene, 41633 ncRNA 112118 Tpnr1 - - 4 75.67 cM thermal pain response 1 unknown 109279853 LOC109279853 Mm28 - - VISTA enhancer mm28 biological-region 53731 D17Zt1 D17Mia1 - - DNA segment, Chr 17, Zdenek Trachtulec 1 unknown 52430 Mm.270783 NM_026728 ENSMUSG00000028601 Echdc2 1300017C12Rik|2610009M20Rik|D4Ertd765e - 4 C7|4 50.3 cM enoyl Coenzyme A hydratase domain containing 2 protein-coding 102640106 Gm36255 - - 18 E2|18 predicted gene, 36255 pseudo 102635265 XR_388925 Gm32650 - - 11 C|11 predicted gene, 32650 ncRNA 15415 Mm.390366 NM_010460 ENSMUSG00000038721 Hoxb7 AI325018|Hox-2.3 - 11 D|11 59.82 cM homeobox B7 protein-coding 102640357 XR_380772 Gm36440 - - 10 D1|10 predicted gene, 36440 ncRNA 12839 Mm.154662 NM_007740 ENSMUSG00000026147 Col9a1 Col9a-1 - 1 A5|1 9.95 cM collagen, type IX, alpha 1 protein-coding 74008 Mm.482224 NM_028710 ENSMUSG00000020604 Arsg 6330406P08Rik|AI846872|ASG - 11|11 E1 arylsulfatase G protein-coding 102640216 XR_390809 Gm28874 - - 4 D2.3|4 predicted gene 28874 ncRNA 105244340 Gm39969 - - 2|2 predicted gene, 39969 ncRNA 77069 6030400A10Rik - - 5|5 RIKEN cDNA 6030400A10 gene protein-coding 108168121 n-TRtct3 Trnar-ucu|n-Tr23 - 13 A3.1|13 nuclear encoded tRNA arginine 3 (anticodon TCT) tRNA 70966 XR_001778513 ENSMUSG00000054910 4931415C17Rik 2810048G06Rik - 8|8 A1.1 RIKEN cDNA 4931415C17 gene ncRNA 60762 D2Mit58 - - 2 56.21 cM DNA segment, Chr 2, Massachusetts Institute of Technology 58 unknown 109428 Daq2 - - - directional asymmetry QTL 2 unknown 100415994 Gm14361 - - X|X A1.1 predicted gene 14361 pseudo 667992 Mm.479865 NM_053211 ENSMUSG00000030196 Tas2r103 EG667992|T2R3|TRB2|Tas2r10|Tas2r3|mGR03|mt2r63 - 6 G1|6 64.03 cM taste receptor, type 2, member 103 protein-coding 107889 Mm.1399 NM_008104 ENSMUSG00000021362 Gcm2 Gcm-rs1|Gcm1|Gcm1-rs2 - 13|13 A3.3 glial cells missing homolog 2 protein-coding 100036213 Mndl1 - - 11 14.44 cM mandible length 1 unknown 75561 Mm.332665 XR_380261 1700016J18Rik - - 10|10 B2 RIKEN cDNA 1700016J18 gene ncRNA 108258 Hnrpx-ps - - - heterogeneous nuclear ribonucleoprotein X, pseudogene pseudo 100042103 Gm3669 - - X A3.1|X predicted gene 3669 ncRNA 72411 3300002I10Rik - - 1|1 RIKEN cDNA 3300002I10 gene protein-coding 104090 Hxa H-X|H-hix - - histocompatibility X protein-coding 108169030 XR_001784821 Gm46902 - - 5 A3|5 predicted gene, 46902 ncRNA 27361 Mm.28212 NM_013759 ENSMUSG00000075705 Msrb1 D17Wsu82e|SELX|SelR|Sepr|Sepx1 - 17 A3.3|17 12.53 cM methionine sulfoxide reductase B1 protein-coding 102640389 XR_379559 Gm36459 - - 9 C|9 predicted gene, 36459 ncRNA 53104 Y78m6g9 - - - DNA segment, Y78m6g9 unknown 100417582 Gm18696 - - 12|12 A1.1 ring finger and WD repeat domain 2 pseudogene pseudo 102641152 XR_867259 Gm38537 - - 3 C|3 predicted gene, 38537 ncRNA 628261 Bb1 - - 6|6 C1 Ig kappa chain variable segment other 381287 Mm.487565 NM_213615 ENSMUSG00000089844 A530032D15Rik Gm1888 - 1|1 C5 RIKEN cDNA A530032D15Rik gene protein-coding 668294 Rps19-ps10 EG668294|Gm9091 - 10|10 B3 ribosomal protein S19, pseudogene 10 pseudo 14918 Mm.389928 NM_001034890 ENSMUSG00000074003 Gucy2d - - 7 E1|7 53.86 cM guanylate cyclase 2d protein-coding 105246473 XR_001782549 Gm41758 - - 18 E1|18 predicted gene, 41758 ncRNA 18815 Mm.971 NM_008877 ENSMUSG00000059481 Plg AI649309|Pg - 17 A1|17 8.5 cM plasminogen protein-coding 19603 Rb(7.13)1Oxf Rb1Oxf - - Robertsonian translocation, Chr 7 and 13, Oxford 1 other 30052 Mm.4881 NM_013892 ENSMUSG00000039278 Pcsk1n AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS - X|X A1.1 proprotein convertase subtilisin/kexin type 1 inhibitor protein-coding 319263 Mm.21539 NM_183028 ENSMUSG00000051285 Pcmtd1 8430411F12Rik|A030012M09Rik - 1|1 A1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 107566 Mm.393247 NM_024191 ENSMUSG00000031776 Arl2bp 1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1 - 8|8 C5 ADP-ribosylation factor-like 2 binding protein protein-coding 493050 Fcsa4 - - X 34.57 cM femoral cross-sectional area 4 unknown 20511 Mm.267547 NM_011393 ENSMUSG00000005089 Slc1a2 1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1 - 2 E2|2 54.13 cM solute carrier family 1 (glial high affinity glutamate transporter), member 2 protein-coding 61419 D5Mit202 - - 5 40.37 cM DNA segment, Chr 5, Massachusetts Institute of Technology 202 unknown 110120537 LOC110120537 - - - VISTA enhancer mm1446 biological-region 666028 Gm7897 EG666028 - 1|1 H3 predicted gene 7897 protein-coding 68591 Mm.28252 NM_026779 ENSMUSG00000039616 Mocos 1110018O12Rik|HMCS|MCS|MOS - 18|18 A2 molybdenum cofactor sulfurase protein-coding 105246887 XR_001780336 Gm42090 - - 11 E1|11 predicted gene, 42090 ncRNA 71279 Mm.284462 NM_023596 ENSMUSG00000020100 Slc29a3 4933435C21Rik|AW987637|Ent3 - 10|10 B4 solute carrier family 29 (nucleoside transporters), member 3 protein-coding 170947 Mm.159257 NM_133363 ENSMUSG00000049173 Myoz3 4833419K08Rik|Fatz-3 - 18|18 D3 myozenin 3 protein-coding 100034673 Mm.247046 E430020m11rik - - 13|13 A3 RIKEN cDNA E430020M11 gene unknown 105244100 NM_001359165 Gm39774 LCN17 - 2 A3|2 predicted gene, 39774 protein-coding 105242540 XR_868626 Gm38725 - - 5 G2|5 predicted gene, 38725 ncRNA 100158260 Gm17800 - - 19|19 B glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 63021 D17Mit104 - - 17 19.54 cM DNA segment, Chr 17, Massachusetts Institute of Technology 104 unknown 102636187 XR_384284 Gm33324 - - 15 E1|15 predicted gene, 33324 ncRNA 100124364 Traj25 Gm16823 - 14|14 C2 T cell receptor alpha joining 25 other 102633507 XR_389006 Gm31317 - - 11 D|11 predicted gene, 31317 ncRNA 69593 Mm.410854 XR_386153 2310026I22Rik - - 18|18 B1 RIKEN cDNA 2310026I22 gene ncRNA 105246514 Mm.329574 XR_877615 Gm41795 - - 18 E3|18 predicted gene, 41795 ncRNA 70798 4631422I05Rik - - 13|13 RIKEN cDNA 4631422I05 gene protein-coding 74711 Mm.44746 NM_029064 ENSMUSG00000074673 Ttll9 1700016F23Rik|4930509O20Rik|AW046572 - 2|2 H1 tubulin tyrosine ligase-like family, member 9 protein-coding 74574 Mm.26379 NM_029008 ENSMUSG00000024481 Lvrn 4833403I15Rik|APQ|Aqpep - 18|18 C laeverin protein-coding 110832 Kras2-rs1 Kras-2rs|Kras2-rs - - Kirsten rat sarcoma oncogene 2, related sequence 1 protein-coding 100038536 Mm.335802 G530012D18Rik - - - RIKEN cDNA G530012D1 gene protein-coding 258976 Mm.223367 NM_146974 ENSMUSG00000051313 Olfr1262 MOR234-1|or-leaf2 - 2|2 E1 olfactory receptor 1262 protein-coding 629340 Gm6964 EG629340 - X|X C1 predicted gene 6964 pseudo 100041660 Mm.487231 NR_110518 Gm3458 - - 9 D|9 predicted gene 3458 ncRNA 100049545 NR_030530 ENSMUSG00000077119 Mir741 Mirn741|mir-741|mmu-miR-742|mmu-mir-741 - X A7.1|X microRNA 741 ncRNA 97148 C78692 - - - expressed sequence C78692 protein-coding 114287 Manh20 QTL-SH14.1 - - mandible shape 20 unknown 105887 Mm.482274 NM_207216 ENSMUSG00000072664 Ugt3a1 AI746432 - 15|15 A1 UDP glycosyltransferases 3 family, polypeptide A1 protein-coding 105244672 XR_868059 Gm12865 - - 4 D2.1|4 55.27 cM predicted gene 12865 ncRNA 73615 1700128I11Rik - - 14|14 RIKEN cDNA 1700128I11 gene protein-coding 102636104 XR_376661 Gm33269 - - 4 D2.2|4 predicted gene, 33269 ncRNA 105244699 XR_868200 Gm40258 - - 4 D2.2|4 predicted gene, 40258 ncRNA 381806 Mm.482418 NM_001013775 ENSMUSG00000071204 Gm10319 EG381806 - 6 F1|6 murinoglobulin pseudogene pseudo 380696 Gm12194 EG380696 - 11|11 B1.3 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 432641 Mm.112955 NR_045844 Gm17746 - - 12|12 A1.3 predicted gene, 17746 ncRNA 105246540 XR_877745 Gm41814 - - 19 B|19 predicted gene, 41814 ncRNA 102636781 XR_001783914 Gm16069 - - 3 F1|3 39.01 cM predicted gene 16069 ncRNA 77948 A930016I07Rik - - 7|7 RIKEN cDNA A930016I07 gene protein-coding 100093649 Trnav-cac - - - transfer RNA valine (anticodon CAC) tRNA 100504457 Mm.272027 NR_153846 4921513H07Rik - - 6|6 F3 RIKEN cDNA 4921513H07 gene ncRNA 328573 Mm.399189 NM_001166475 ENSMUSG00000075524 4930407I10Rik Gm747 - 15|15 E1 RIKEN cDNA 4930407I10 gene protein-coding 74722 Mm.401029 4930517J16Rik - - 4|4 RIKEN cDNA 4930517J16 gene protein-coding 100861663 XM_006540506 Gm21115 - - 7 B3|7 predicted gene, 21115 protein-coding 403088 Mm.354652 NM_203396 ENSMUSG00000018656 Tcaf3 Eapa2|Fam115e - 6|6 B2.1 TRPM8 channel-associated factor 3 protein-coding 634340 Mm.66709 NR_033597 ENSMUSG00000082853 Gm7134 EG634340 - X E1|X kinesin family member 18B pseudogene pseudo 102642791 XR_001784863 Gm38634 - - 5 C3.1|5 predicted gene, 38634 ncRNA 101056109 Gm29564 - - Y|Y predicted gene 29564 protein-coding 100035222 Abfp2 - - - abdominal fat percentage 2 unknown 102639388 XR_001782002 Gm35714 - - 16 C3.3|16 predicted gene, 35714 ncRNA 667306 XR_389050 Gm11634 - - 11|11 D predicted gene 11634 unknown 102643091 XR_878136 Gm38657 - - X C3|X predicted gene, 38657 ncRNA 109769 Tcp6 Tcp-6 - - t-complex protein 6 protein-coding 225579 Mm.258517 NM_001081072 ENSMUSG00000024600 Slc27a6 4732438L20Rik|FACVL2|FATP6|VLCS-H1 - 18|18 D3 solute carrier family 27 (fatty acid transporter), member 6 protein-coding 108169091 LOC108169091 - - 5 G3 40S ribosomal protein S10 pseudogene pseudo 629219 Mm.439627 NM_001081325 ENSMUSG00000070810 Sult2a6 EG629219|Gm6957 - 7|7 A1 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 6 protein-coding 70267 2010109K09Rik - - 2|2 RIKEN cDNA 2010109K09 gene protein-coding 81906 Mm.215544 NM_001003947 ENSMUSG00000047155 Cyp4x1 A230025G20|CYPIVX1|CYP_a|Cyp4a28-ps - 4|4 D1 cytochrome P450, family 4, subfamily x, polypeptide 1 protein-coding 111891 Iap5rb7 - - - intracisternal A-type particle, U5 region, SINE repeat b-7 other 105243139 XR_870242 LOC105243139 - - 8 A2 uncharacterized LOC105243139 ncRNA 71333 5430408I23Rik - - - RIKEN cDNA 5430408I23 gene protein-coding 104188 Lna1 Lna-1 - - lymph node antigen 1 protein-coding 105246670 Gm41922 - - 1|1 predicted gene, 41922 ncRNA 100035583 Bmch3 - - - bone mechanical trait 3 unknown 102641929 XR_882201 Gm38584 Gm44534 - 7 C|7 predicted gene, 38584 ncRNA 102465649 NR_106039 ENSMUSG00000099080 Mir7071 Gm27623|mmu-mir-7071 - 8|8 C3 microRNA 7071 ncRNA 100417159 Gm18431 - - 3|3 A1 crumbs homolog 1 pseudogene pseudo 242474 Mm.296632 NM_175518 ENSMUSG00000055296 Tmem245 A630051L19Rik|AI957324|D730040F13Rik - 4|4 B3 transmembrane protein 245 protein-coding 102632651 Gm30673 - - 9|9 predicted gene, 30673 ncRNA 18654 Mm.4809 NM_008827 ENSMUSG00000004791 Pgf AI854365|PIGF|Plgf - 12 D1|12 39.58 cM placental growth factor protein-coding 102639109 LOC102639109 - - 9 F2 60S ribosomal protein L7 pseudogene pseudo 30896 AI225873 - - - EST AI225873 unknown 68304 Mm.427519 NM_212445 ENSMUSG00000034487 Kdelc2 2010004J24Rik|4833410J10Rik|AW549401 - 9|9 A5.3 KDEL (Lys-Asp-Glu-Leu) containing 2 protein-coding 69281 Mm.45833 NM_133711 ENSMUSG00000031518 Spata4 1700001N01Rik|Srg2|TSARG2 - 8|8 B1.3 spermatogenesis associated 4 protein-coding 61822 D2Mit343 - - 2 89.27 cM DNA segment, Chr 2, Massachusetts Institute of Technology 343 unknown 100503239 Gm14882 - - X|X 47.36 cM SNRPN upstream reading frame protein-like pseudo 442854 D6Tem1 - - - DNA segment, Chr 6, Temple 1 unknown 387228 NR_029718 ENSMUSG00000065437 Mir30d Mirn30d|mir-30d|mmu-mir-30d - 15|15 D2 microRNA 30d ncRNA 399639 Mm.390486 C530038A18Rik - - - RIKEN cDNA C530038A18 gene protein-coding 627311 XM_017318663 Gm6744 EG627311 - X|X F5 predicted gene 6744 protein-coding 791344 Mm.268922 E330037I15Rik - - - RIKEN cDNA E330037I15 gene unknown 105247138 XR_881304 Gm42292 - - 4 B3|4 predicted gene, 42292 ncRNA 102634097 LOC102634097 - - 18 B3 small ubiquitin-related modifier 2 pseudogene pseudo 100417160 Gm18432 - - 3|3 F2.1 splicing factor 3a, subunit 3 pseudogene pseudo 72058 Mm.119714 NM_028078 ENSMUSG00000000159 Igsf5 2010003D20Rik|JCAM|Jam4 - 16|16 C4 immunoglobulin superfamily, member 5 protein-coding 102635738 Gm33000 - - 5|5 predicted gene, 33000 ncRNA 100526491 NR_037260 ENSMUSG00000105182 Mir669a-9 mmu-mir-669a-9 - 2 A1|2 8.22 cM microRNA 4669a-9 ncRNA 666162 Gm7959 EG666162 - 12|12 C2 predicted gene 7959 pseudo 638867 Gm7253 - - 17 E1.1|17 predicted gene 7253 pseudo 71755 Mm.34208 NM_027903 ENSMUSG00000011382 Dhdh 1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1 - 7 B3|7 29.32 cM dihydrodiol dehydrogenase (dimeric) protein-coding 666675 XM_011245307 Gm8229 EG666675 - 14|14 C1 predicted gene 8229 protein-coding 70319 Mm.410850 2600006K01Rik - - 2|2 B RIKEN cDNA 2600006K01 gene unknown 102632451 XR_376960 Gm30519 - - 5 C1|5 predicted gene, 30519 ncRNA 666134 Gm7943 EG666134 - 8|8 B3.3 keratin 18 pseudogene pseudo 104685 AW743339 - - - expressed sequence AW743339 unknown 105244173 XR_001780091 Gm39827 - - 11 B1.3|11 predicted gene, 39827 ncRNA 100416061 Gm17897 - - 2|2 H1 sorting nexin 2 pseudogene pseudo 71069 Mm.23973 NM_175162 ENSMUSG00000038143 Stox2 4933409N07Rik|AI449080|AI835114|mKIAA1392 - 8|8 B1.1 storkhead box 2 protein-coding 61542 D9Mit128 - - 9 20.69 cM DNA segment, Chr 9, Massachusetts Institute of Technology 128 unknown 53120 B3N(II) - - - DNA segment, B3N(II) unknown 664949 Mm.442567 XR_389807 Gm7420 EG664949 - 5 B1|5 predicted gene 7420 unknown 667458 Gm8642 EG667458 - 18|18 D3 glutamate-ammonia ligase (glutamine synthetase) pseudogene pseudo 194960 Rpl27-ps2 Gm11552 - 11|11 D ribosomal protein L27, pseudogene 2 pseudo 66234 Mm.30119 NM_025436 ENSMUSG00000031604 Msmo1 1500001G16Rik|C78600|DESP4|ERG25|Sc4mol - 8|8 B3.1 methylsterol monoxygenase 1 protein-coding 53306 23H6sc34 - - - DNA segment, 23H6sc34 (Roswell Park) unknown 268903 Mm.74711 NM_173440 ENSMUSG00000048490 Nrip1 6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140 - 16|16 C3.1 nuclear receptor interacting protein 1 protein-coding 18247 Mm.116749 NM_010952 ENSMUSG00000040652 Oaz2 AZ-2|AZ2|Oaz2-ps|Sez15 - 9|9 C ornithine decarboxylase antizyme 2 protein-coding 667519 Gm8681 EG667519 - 10|10 A4 high mobility group box 2 pseudogene pseudo 110182 Penk-rs Penk|Penk2 - - preproenkephalin, related sequence protein-coding 54678 Mm.468052 NM_018791 ENSMUSG00000030486 Zfp108 - - 7|7 A3 zinc finger protein 108 protein-coding 100043764 Gm4631 - - 2 H4|2 predicted gene 4631 unknown 108168980 XR_001784448 Gm46871 - - 4 D2.2|4 predicted gene, 46871 ncRNA 102637962 XR_388591 Gm34644 - - 11 A5|11 predicted gene, 34644 ncRNA 105243859 XR_865179 Gm39590 - - 1 A2|1 predicted gene, 39590 ncRNA 258183 Mm.377373 NM_001011864 ENSMUSG00000063225 Olfr917 MOR168-2P - 9|9 A5.1 olfactory receptor 917 protein-coding 101056308 XM_011251516 LOC101056308 - - - Y-linked testis-specific protein 1-like protein-coding 12617 Mm.4649 NM_007683 ENSMUSG00000029253 Cenpc1 CENP-C|Cenpc - 5|5 E1 centromere protein C1 protein-coding 102466765 NR_105884 ENSMUSG00000098474 Mir6919 Gm27889|mmu-mir-6919 - 11|11 B1.3 microRNA 6919 ncRNA 76607 1700058J15Rik - - 2|2 RIKEN cDNA 1700058J15 gene protein-coding 105244361 XR_866968 Gm39984 - - 2 H3|2 predicted gene, 39984 ncRNA 320752 Mm.46158 NM_001166207 ENSMUSG00000085576 Dpy19l2 4932443J21Rik|Gm18376 - 9|9 A4 dpy-19-like 2 (C. elegans) protein-coding 102637470 Gm34272 - - 7 B5|7 predicted gene, 34272 pseudo 105243245 XR_879057 Gm39218 - - 8 C3|8 predicted gene, 39218 ncRNA 102634471 Gm32048 - - 11 B1.3|11 predicted gene, 32048 pseudo 67994 Mm.297033 NM_026498 ENSMUSG00000030611 Mrps11 0710005I03Rik|C79873|MRP-S11|S11mt - 7|7 D2 mitochondrial ribosomal protein S11 protein-coding 381914 Mm.291232 NM_001331201 ENSMUSG00000109284 B230311B06Rik Gm1695 - 7|7 F2 RIKEN cDNA B230311B06 gene protein-coding 102637373 XR_384298 Gm34201 - - 15 E2|15 predicted gene, 34201 ncRNA 52462 D10Ertd43e - - 10 56.29 cM DNA segment, Chr 10, ERATO Doi 43, expressed unknown 108633 Edv3 - - - endogenous sequence related to the Duplan murine retrovirus 3 other 70924 Mm.444622 NR_045502 ENSMUSG00000104585 4921511C10Rik - - 3|3 E3 RIKEN cDNA 4921511C10 gene ncRNA 18117 Mm.2136 NM_010926 ENSMUSG00000031819 Emc8 Cox4nb|Fam158b|Noc4 - 8 E1|8 69.98 cM ER membrane protein complex subunit 8 protein-coding 73145 3110037L02Rik - - 8|8 RIKEN cDNA 3110037L02 gene protein-coding 78257 Mm.266280 NM_030070 ENSMUSG00000021090 Lrrc9 4921529O18Rik|4930432K16Rik - 12|12 C3 leucine rich repeat containing 9 protein-coding 73456 Mm.380445 NM_001018013 ENSMUSG00000064158 Izumo1 1700058F15Rik|Izumo - 7|7 B3 izumo sperm-egg fusion 1 protein-coding 231440 Mm.5002 NM_145562 ENSMUSG00000034981 Parm1 2210012L08Rik|9130213B05Rik|W91666 - 5|5 E2 prostate androgen-regulated mucin-like protein 1 protein-coding 66300 Mm.218698 NM_001136270 ENSMUSG00000091811 Inafm1 2610014I16Rik|Prr24 - 7|7 A2 InaF motif containing 1 protein-coding 102635124 XR_380128 Gm32543 - - 10 A2|10 predicted gene, 32543 ncRNA 329759 Mm.397712 9330210C06 - - 3|3 G3 uncharacterized protein 9330210C06 unknown 57745 Mm.82678 NM_021307 ENSMUSG00000052675 Zfp112 Znf112|Znf228 - 7|7 A3 zinc finger protein 112 protein-coding 100035905 Kdw1 - - 19 50.72 cM kidney weight 1 unknown 75740 Mm.330948 NM_029412 ENSMUSG00000063600 Egfem1 6130401L20Rik|Efcab11 - 3|3 A3 EGF-like and EMI domain containing 1 protein-coding 102809 AW742630 - - - expressed sequence AW742630 unknown 100502796 Gm19378 - - 15|15 44.96 cM predicted gene, 19378 ncRNA 74739 5830400J07Rik - - 12|12 RIKEN cDNA 5830400J07 gene protein-coding 102640337 XR_869505 Gm36428 - - 6 G1|6 predicted gene, 36428 ncRNA 330958 Mm.411888 NR_040769 ENSMUSG00000111232 A730043L09Rik A730043L09 - 9|9 B RIKEN cDNA A730043L09 gene ncRNA 27512 B11I10S - - - DNA segment, B11I10S unknown 102635306 XR_384791 Gm32679 - - 16 B2|16 predicted gene, 32679 ncRNA 26901 Mm.24848 NM_026794 ENSMUSG00000032526 Ss18l2 1110020I04Rik|AI463209|Deb1 - 9|9 F4 SS18, nBAF chromatin remodeling complex subunit like 2 protein-coding 108168153 XM_017316262 LOC108168153 - - 14 B disks large homolog 5-like protein-coding 108244 Dppa5-ps2 Esg1-ps2|esg-1 - - developmental pluripotency associated 5, pseudogene 2 pseudo 108168332 XR_001782170 Gm46589 - - 17 D|17 predicted gene, 46589 ncRNA 666471 Gm8122 EG666471 - 14|14 C1 predicted gene 8122 protein-coding 109689 Mm.260193 NM_177231 ENSMUSG00000018909 Arrb1 1200006I17Rik|AW208571|G430100A01Rik - 7 E1|7 54.09 cM arrestin, beta 1 protein-coding 102639655 Gm13562 - - 2|2 18.87 cM predicted gene 13562 ncRNA 665868 Gm12029 - - 11|11 A3.1 predicted gene 12029 pseudo 108529 Grcl - - - growth and reproduction complex, grc-region-like other 102635105 Gm32526 - - 13 A1|13 predicted gene, 32526 pseudo 12501 Mm.210361 NM_007648 ENSMUSG00000032093 Cd3e AI504783|CD3|CD3epsilon|T3e - 9 A5.2|9 24.84 cM CD3 antigen, epsilon polypeptide protein-coding 112408 Mm.261566 NM_053212 ENSMUSG00000030194 Tas2r116 T2R16|TRB1|TRB4|Tas2r14|Tas2r16|Tas2r7|mGR16|mt2r56 - 6 G1|6 64.03 cM taste receptor, type 2, member 116 protein-coding 105245967 XR_875387 Gm41338 - - 15 D1|15 predicted gene, 41338 ncRNA 105244785 Gm40335 - - 5|5 predicted gene, 40335 ncRNA 432947 Gm5470 EG432947 - 15|15 B3.1 GC-rich promoter binding protein 1-like 1 pseudogene pseudo 100038949 NM_001281519 ENSMUSG00000091049 Gm1979 - - 5 B1|5 predicted gene 1979 protein-coding 319223 Mm.446014 5930420M18Rik - - 5|5 RIKEN cDNA 5930420M18 gene protein-coding 105244743 XR_868410 Gm40299 - - 5 B3|5 predicted gene, 40299 ncRNA 105245798 XR_874751 Gm41189 - - 14 D1|14 predicted gene, 41189 ncRNA 72480 Mm.21485 NM_030203 ENSMUSG00000039485 Tspyl4 2610102M01Rik|B230210I21Rik|D10Bwg0791e - 10 B1|10 18.85 cM TSPY-like 4 protein-coding 107507 Pcs1 Pcs-1 - - polar cataract and small eyes 1 protein-coding 619806 Igkv4-51 - - 6|6 C1 immunoglobulin kappa chain variable 4-51 other 12696 Mm.17898 NM_007705 ENSMUSG00000045193 Cirbp Cirp|R74941 - 10 C1|10 39.72 cM cold inducible RNA binding protein protein-coding 632802 Gm7094 EG632802 - 1|1 A4 predicted pseudogene 7094 protein-coding 22328 vc - - - vacillans unknown 55960 Mm.287896 NM_019480 ENSMUSG00000022339 Ebag9 AI835379|Rcas1 - 15|15 B3.2 estrogen receptor-binding fragment-associated gene 9 protein-coding 109279896 LOC109279896 Mm73 - - VISTA enhancer mm73 biological-region 61150 D10Mit51 - - - DNA segment, Chr 10, Massachusetts Institute of Technology 51 unknown 102632178 XR_380484 Gm30322 - - 10 B4|10 predicted gene, 30322 ncRNA 102634814 Gm26788 - - 1|1 predicted gene, 26788 ncRNA 111583 Pmv16 Pmv-16 - - polytropic murine leukemia virus 16 other 100885840 NR_049201 ENSMUSG00000094173 Mir344h-1 Gm24425|mmu-mir-344h-1 - 7|7 C microRNA 344h-1 ncRNA 100416648 Gm18168 - - 16|16 C3.1 olfactory receptor 818 pseudogene pseudo 320127 Mm.119469 NM_001081206 ENSMUSG00000038665 Dgki 6430604M11Rik|C130010K08Rik - 6|6 B1 diacylglycerol kinase, iota protein-coding 382388 Gm5173 EG382388 - 10|10 C1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 66483 Mm.379115 NM_025589 ENSMUSG00000049751 Rpl36al 2410038A03Rik|RPL36A - 12|12 C2 ribosomal protein L36A-like protein-coding 319339 C130063H03Rik - - 13|13 RIKEN cDNA C130063H03 gene protein-coding 69055 Mm.396318 NR_038136 ENSMUSG00000100001 1810007D17Rik - - 19|19 D2 RIKEN cDNA 1810007D17 gene ncRNA 75223 Mm.444771 NR_045977 ENSMUSG00000097502 4930528D03Rik - - 13|13 B2 RIKEN cDNA 4930528D03 gene ncRNA 56863 Mm.491368 NM_020293 ENSMUSG00000066720 Cldn9 nmf329 - 17|17 A3.3 claudin 9 protein-coding 111443 Emv55 Emv-55 - - endogenous ecotropic MuLV 55 other 105242538 Gm38724 - - 5|5 predicted gene, 38724 ncRNA 100041403 Gm15195 - - X|X F4 predicted gene 15195 pseudo 102635536 XR_375017 Gm14055 - - 2 F3|2 67.83 cM predicted gene 14055 ncRNA 69117 Mm.46265 NM_026945 ENSMUSG00000053054 Adh6a 1810009C16Rik|Adh5a - 3|3 G3 alcohol dehydrogenase 6A (class V) protein-coding 69296 Mm.235024 NM_027025 ENSMUSG00000000562 Tmigd3 1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd - 3 F2.2|3 transmembrane and immunoglobulin domain containing 3 protein-coding 791370 Mm.382507 XR_875614 A130051J06Rik - - 15 E3-F1|15 RIKEN cDNA A130051J0 gene unknown 100502792 Gm19374 - - 12|12 62.9 cM predicted gene, 19374 unknown 71081 Mm.383491 NR_040498 ENSMUSG00000085198 4933416E03Rik - - 2|2 H2 RIKEN cDNA 4933416E03 gene ncRNA 20186 Mm.3095 NM_009108 ENSMUSG00000047638 Nr1h4 AI957360|Fxr|HRR1|RIP14|Rxrip14 - 10 C2|10 44.98 cM nuclear receptor subfamily 1, group H, member 4 protein-coding 100504089 Gm20056 - - 16 B3|16 22.67 cM calcium-binding protein p22-like pseudo 17904 Mm.337074 NM_010860 ENSMUSG00000090841 Myl6 ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln - 10|10 D3 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle protein-coding 231931 Mm.321047 NM_153175 ENSMUSG00000047867 Gimap6 4833419H03Rik|Ian6|mFLJ00102 - 6|6 B2.3 GTPase, IMAP family member 6 protein-coding 61376 D5Mit1001 D4Mit222 - 5 87.94 cM DNA segment, Chr 5, Massachusetts Institute of Technology 1001 unknown 30822 DXChri2 - - - DNA segment, Chr X, Children's Hospital Research Institute 2 unknown 102639995 XM_006514348 ENSMUSG00000112653 Gm36176 - - 10 C1|10 predicted gene, 36176 protein-coding 102635184 XR_382890 Gm27572 - - 13 D2.1|13 predicted gene, 27572 ncRNA 21067 T(11;16A)53Dn T(11;16)53Dn|T53Dn - - reciprocal translocation, Chr 11; and Chr 16, cytogenetic band A, Davisson 53 other 666036 Gm7901 EG666036 - 8|8 C1 3-phosphoglycerate dehydrogenase pseudogene pseudo 100502655 Gm19306 - - 2 G3|2 74.83 cM predicted gene, 19306 pseudo 102640154 XR_386935 Gm36289 - - X A6|X predicted gene, 36289 ncRNA 108168327 XR_001782161 Gm46584 - - 17 E2|17 predicted gene, 46584 ncRNA 70460 2610306O10Rik - - 7|7 RIKEN cDNA 2610306O10 gene protein-coding 100039674 Mm.335899 XM_006511606 Gm10634 - - 9|9 E3.1 predicted gene 10634 protein-coding 11657 Mm.16773 NM_009654 ENSMUSG00000029368 Alb Alb-1|Alb1|BCL002 - 5 E1|5 44.7 cM albumin protein-coding 105244940 XR_872845 Gm40462 - - 12 C3|12 predicted gene, 40462 ncRNA 100036471 Pstc2 - - - periosteal circumference 2 unknown 68472 Mm.289791 NM_026734 ENSMUSG00000030614 Tmem126b 1110001A23Rik - 7|7 E1 transmembrane protein 126B protein-coding 109467 Pas2 Pas-2 - 17|17 17.98 cM pulmonary adenoma susceptibility 2 unknown 100035174 Reb1 - - - repetitive behavior 1 unknown 61893 D1Mit439 - - 1 41.81 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 439 unknown 105244297 XR_866741 Gm39936 - - 2 F1|2 predicted gene, 39936 ncRNA 668697 Gm9305 EG668697 - 12|12 A1.3 predicted gene 9305 pseudo 108168956 XM_017320489 LOC108168956 - - 4 B3 translation initiation factor IF-2-like protein-coding 73327 Mm.379221 NM_028505 ENSMUSG00000030008 Pradc1 1700040I03Rik|Pap21 - 6|6 C3 protease-associated domain containing 1 protein-coding 100862249 LOC100862249 - - 5 C3.2 40S ribosomal protein S2 pseudogene pseudo 102636349 XR_386965 ENSMUSG00000086207 LOC102636349 - - X A7.3 uncharacterized LOC102636349 ncRNA 100049569 Mm.440007 A730015C16Rik - - - RIKEN cDNA A730015C16 gene unknown 227715 Mm.150972 NM_144886 ENSMUSG00000039356 Exosc2 Rrp4 - 2|2 B exosome component 2 protein-coding 100035470 Abfm1 - - - abdominal fat mass 1 unknown 242093 Mm.269130 NM_181817 ENSMUSG00000049741 Rxfp4 GPCR142|Gpr100|Rln3r2|SALPR - 3|3 F1 relaxin family peptide receptor 4 protein-coding 100503014 Gm19505 - - 19 A|19 4.34 cM PCNA-associated factor-like pseudo 102637478 XR_873339 Gm34276 - - 13 A5|13 predicted gene, 34276 ncRNA 100416251 Gm16300 - - 15|15 B3.3 WD repeat domain 12 pseudogene pseudo 93674 Mm.440772 NM_053097 ENSMUSG00000051262 Nat8f3 4833414A14Rik|4930583K21Rik|Cml3 - 6|6 C3 N-acetyltransferase 8 (GCN5-related) family member 3 protein-coding 258151 Mm.377361 NM_001011850 ENSMUSG00000062314 Olfr1505 MOR211-4P - 19|19 A olfactory receptor 1505 protein-coding 100312949 Mm.475848 NM_001167588 ENSMUSG00000091174 Gm17677 Pate-n|Pate10 - 9 A4|9 20.42 cM predicted gene, 17677 protein-coding 105994 D15Mgi30 AV046995 - - DNA Segment, Chr 15, Mouse Genome Informatics 30 unknown 404371 Olfr278-ps1 - - 15|15 F1 olfactory receptor 278, pseudogene 1 pseudo 72022 Mm.26159 NM_028060 ENSMUSG00000042195 Slc35f2 1500009K05Rik|AU019213 - 9|9 A5.3 solute carrier family 35, member F2 protein-coding 110230 Igh-Ns1 - - - immunoglobulin heavy chain Ns1 other 664918 Gm7405 EG664918 - X E1|X Ras-GTPase-activating protein SH3-domain binding protein 1 pseudogene pseudo 18705 Mm.333471 NM_011084 ENSMUSG00000030228 Pik3c2g C80387|PI3K-C2-gamma - 6 G2|6 69.7 cM phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 434171 Mm.60990 NM_001013810 ENSMUSG00000060565 Gm5591 EG434171 - 7 B3|7 predicted gene 5591 protein-coding 258193 Mm.455306 Olfr1397-ps1 MOR5-3 - 11|11 E1 olfactory receptor 1397, pseudogene 1 pseudo 666111 Rpl29-ps5 EG666111|Gm7934 - 18|18 B1 ribosomal protein L29, pseudogene 5 pseudo 111904 Iap3rb6 - - - intracisternal A-type particle, U3 region, SINE repeat b-6 other 382035 Mm.25449 NM_001007462 ENSMUSG00000069867 Pabpn1l Gm1108|Pabpnl1|ePABP2 - 8|8 E1 poly(A)binding protein nuclear 1-like protein-coding 15016 Mm.439648 NR_051981 ENSMUSG00000055413 H2-Q5 H-2Q5|Qa-5|Qa5|Qat-5 - 17 B1|17 18.65 cM histocompatibility 2, Q region locus 5 pseudo 414128 Mm.450976 NR_126063 ENSMUSG00000110242 G630064G18Rik - - 8 A4|8 RIKEN cDNA G630064G18 gene ncRNA 77602 C430050I21Rik - - 8|8 RIKEN cDNA C430050I21 gene protein-coding 102639588 XR_381025 ENSMUSG00000084819 Gm11967 - - 11 A1|11 3.89 cM predicted gene 11967 ncRNA 110743 Dcsx2 Dcsx4 - - distortion controlling, chromosome X, locus 2 protein-coding 258480 Mm.377525 NM_146487 ENSMUSG00000094878 Olfr130 MOR256-19 - 17|17 B1 olfactory receptor 130 protein-coding 105245405 Gm40867 - - 12|12 predicted gene, 40867 ncRNA 100035441 Ity8 - - - immunity to S. typhimurium 8 unknown 71955 Mm.290036 NM_028018 ENSMUSG00000031729 Ist1 2400003C14Rik|AW536298|mKIAA0174 - 8|8 D3 increased sodium tolerance 1 homolog (yeast) protein-coding 27507 Y157F2R - - - DNA segment, Y157F2R unknown 71436 Mm.426781 NM_178382 ENSMUSG00000051379 Flrt3 5530600M07Rik|C430047I10Rik|mKIAA1469 - 2|2 F3 fibronectin leucine rich transmembrane protein 3 protein-coding 436232 Gm15041 EG436232 - X|X F1 predicted gene 15041 protein-coding 62953 D12Mit254 - - 12 39.07 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 254 unknown 102638913 NM_001347484 ENSMUSG00000095577 LOC102638913 - - 6 F3 otolin-1-like protein-coding 102638184 LOC102638184 - - 10 D3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 209186 Mm.35071 NM_145368 ENSMUSG00000060317 Acnat2 C730036D15Rik - 4|4 B1 acyl-coenzyme A amino acid N-acyltransferase 2 protein-coding 108168848 Gm37996 - - 3 A1|3 thioredoxin-like protein 4A pseudogene pseudo 20741 Mm.32881 NM_013675 ENSMUSG00000021061 Sptb AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219 - 12 C3|12 33.73 cM spectrin beta, erythrocytic protein-coding 320331 Mm.3941 D230015J17Rik - - 3|3 RIKEN cDNA D230015J17 gene protein-coding 170661 Lcho1 - - 9 69.87 cM liver cholesterol 1 unknown 100503228 Gm12588 - - 11|11 87.95 cM predicted gene 12588 protein-coding 102467270 n-TCgca9 n-Tc9 - 6 B2.3|6 nuclear encoded tRNA cysteine 9 (anticodon GCA) tRNA 76158 6330510M09Rik - - 6|6 RIKEN cDNA 6330510M09 gene protein-coding 625495 Gm6593 EG625495 - 7|7 E3 ribonucleotide reductase M2 pseudogene pseudo 102637802 XR_381578 Gm34523 - - 12 B3|12 predicted gene, 34523 ncRNA 630836 Mm.458553 NM_001243117 ENSMUSG00000074829 2010315B03Rik BC029716 - 9|9 F4 RIKEN cDNA 2010315B03 gene protein-coding 64095 Mm.152780 NM_022320 ENSMUSG00000026271 Gpr35 KPG_007 - 1|1 D G protein-coupled receptor 35 protein-coding 75593 Mm.439947 NM_029353 ENSMUSG00000029815 Malsu1 2410003K15Rik|Matsu1 - 6 B2.3|6 mitochondrial assembly of ribosomal large subunit 1 protein-coding 85154 D1Mit309 - - 1 52.14 cM DNA segment, Chr 1, Massachusetts Institute of Technology 309 unknown 102634376 XR_382356 Gm23952 - - 13 A5|13 predicted gene, 23952 ncRNA 21296 T(X;12)13Rl T13Rl - - reciprocal translocation, Chr X and 12, Russell 13 other 258721 Mm.377655 NM_146726 ENSMUSG00000066241 Olfr514 MOR268-1 - 7|7 E3 olfactory receptor 514 protein-coding 75632 Mm.443237 1700003O11Rik - - 18|18 RIKEN cDNA 1700003O11 gene unknown 668706 Gm11425 - - 11|11 C predicted gene 11425 protein-coding 102638292 Mm.399270 XR_381013 ENSMUSG00000085559 Gm11959 - - 11 A1|11 2.94 cM predicted gene 11959 ncRNA 94045 Mm.156893 NM_033321 ENSMUSG00000005950 P2rx5 P2X5 - 11|11 B4 purinergic receptor P2X, ligand-gated ion channel, 5 protein-coding 353130 Mm.261689 NM_178370 ENSMUSG00000049620 Prss33 Eos|mT6|tryptase-6 - 17 A3.3|17 12.08 cM protease, serine 33 protein-coding 100035495 Bmd31 Bmd24 - - bone mineral density 31 unknown 328968 Mm.392305 NR_045402 Carmn Carmen|E330013P06|Gm16908|Mir143hg - 18|18 E1 cardiac mesoderm enhancer-associated non-coding RNA ncRNA 11856 Mm.441810 NM_009707 ENSMUSG00000031355 Arhgap6 AI504284|RhoGAPX-1 - X|X F5 Rho GTPase activating protein 6 protein-coding 109279993 LOC109279993 Mm774 - - VISTA enhancer mm774 biological-region 76566 Mm.34131 NM_029658 ENSMUSG00000020846 Rflnb 1500005K14Rik|Fam101b|RefilinB|cfm - 11|11 B5 refilin B protein-coding 16159 Mm.103783 NM_008351 ENSMUSG00000027776 Il12a IL-12p35|Il-12a|Ll12a|p35 - 3 E1|3 31.92 cM interleukin 12a protein-coding 100861871 Gm21285 - - Y|Y predicted gene, 21285 protein-coding 544971 Mm.288546 NM_001081061 ENSMUSG00000049658 Bdp1 AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241 - 13 D1|13 52.92 cM B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein-coding 606510 Gm6047 Hn1l-ps1 - 14 C1|14 hematological and neurological expressed 1-like pseudogene 1 pseudo 17737 TrnM - - - tRNA tRNA 105244469 XR_867358 Gm40071 - - 3 E3|3 predicted gene, 40071 ncRNA 21244 T(7;11)40Ad T40Ad - - reciprocal translocation, Chr 7 and 11, Adler 40 other 66138 Mm.439878 NM_025375 ENSMUSG00000005378 Bud23 1110003N24Rik|Wbscr22 - 5|5 G2 BUD23, rRNA methyltransferase and ribosome maturation factor protein-coding 68982 Mm.441992 NR_029432 ENSMUSG00000098702 1500015A07Rik - - 18|18 E1 RIKEN cDNA 1500015A07 gene ncRNA 12223 Mm.2024 NM_007568 ENSMUSG00000082361 Btc Bcn - 5 E2|5 44.78 cM betacellulin, epidermal growth factor family member protein-coding 72584 Mm.327675 NM_028288 ENSMUSG00000031095 Cul4b 2700050M05Rik|AA409770|CUL-4B|mKIAA0695 - X|X A3.3 cullin 4B protein-coding 100036463 Org7 ORG11.1 - 11 33.39 cM organ weight 7 unknown 107984 Amh-rs8 - - - anti-Mullerian hormone, related sequence 8 protein-coding 666534 Gm8151 EG666534 - 9 E1|9 high-mobility group nucleosome binding domain 5 pseudogene pseudo 105245032 XR_870988 Gm40543 - - 9 E3.1|9 predicted gene, 40543 ncRNA 626615 Mm.390820 NM_001177533 ENSMUSG00000091650 Apol11a EG626615 - 15|15 E1 apolipoprotein L 11a protein-coding 258888 Mm.377735 NM_146886 ENSMUSG00000109487 Olfr1298 MOR248-6 - 2|2 E3 olfactory receptor 1298 protein-coding 102637171 XR_376432 Gm34053 - - 4 C5|4 predicted gene, 34053 ncRNA 245575 Gm4992 EG245575|Trim12-X - X|X E3 tripartite motif-containing 5 pseudogene pseudo 100043027 Gm11575 - - 1|1 C2 predicted gene 11575 protein-coding 668751 Gm11443 - - 11|11 C predicted gene 11443 pseudo 102640638 Gm36654 - - 11|11 predicted gene, 36654 ncRNA 100126469 Trav13-1 Gm16980 - 14|14 C2 T cell receptor alpha variable 13-1 other 52805 D2Bwg1072e - - 2 3.16 cM DNA segment, Chr 2, Brigham & Women's Genetics 1072 expressed unknown 12728 Mm.486257 NM_016691 ENSMUSG00000004317 Clcn5 5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545 - X A1.1|X 3.21 cM chloride channel, voltage-sensitive 5 protein-coding 100418403 Gm19186 - - 10|10 C1 required for meiotic nuclear division 5 homolog A pseudogene pseudo 100042027 Gm3631 - - 18|18 B3 ribosomal protein S2 pseudogene pseudo 108115 Mm.133687 NM_148933 ENSMUSG00000038963 Slco4a1 OATP-E|Slc21a12 - 2|2 H4 solute carrier organic anion transporter family, member 4a1 protein-coding 61779 D3Mit255 - - 3 63.32 cM DNA segment, Chr 3, Massachusetts Institute of Technology 255 unknown 26465 Mm.446516 NM_011980 ENSMUSG00000037029 Zfp146 OZF|Znf146 - 7|7 B1 zinc finger protein 146 protein-coding 102633246 Gm12087 - - 11 A3.3|11 16.59 cM predicted gene 12087 pseudo 105244423 XR_879956 Gm40032 - - 11 B3|11 predicted gene, 40032 ncRNA 102631593 XR_381981 Gm29890 - - 12 F1|12 predicted gene, 29890 ncRNA 78363 0610033P13Rik - - - RIKEN cDNA 0610033P13 gene protein-coding 492856 Sluc22 - - 10 54.72 cM susceptibility to lung cancer 22 unknown 100628618 NR_039565 ENSMUSG00000092677 Mir5106 mir-5106|mmu-mir-5106|mu-mir-5106 - 4 B1|4 23.17 cM microRNA 5106 ncRNA 100316663 NR_035410 ENSMUSG00000094297 Mir669k Mirn669k|mir-669k|mmu-mir-669k - 2 A1|2 8.22 cM microRNA 669k ncRNA 667976 Gm8908 EG667976 - X|X C2 tubulin, beta 6 pseudogene pseudo 665613 Gm7713 EG665613 - 15|15 D1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 108169195 Gm46986 - - 6 D1|6 60S ribosomal protein L23a pseudogene pseudo 100526460 NR_037205 ENSMUSG00000093122 Mir1264 mir-1264|mmu-mir-1264 - X F2|X 68.46 cM microRNA 1264 ncRNA 76118 Mm.410778 5830487J09Rik - - 5|5 RIKEN cDNA 5830487J09 gene protein-coding 20452 Mm.306228 NM_009183 ENSMUSG00000040710 St8sia4 PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d - 1|1 D ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 665155 Mm.12848 NM_001100109 ENSMUSG00000112449 Srp54b - - 12|12 C1 signal recognition particle 54B protein-coding 22296 Mm.20471 NM_011683 ENSMUSG00000062818 Vmn1r51 V1R|V1r1|V1ra1|VN12|mV1R1 - 6|6 D1 vomeronasal 1 receptor 51 protein-coding 100034979 Bwnd2wk5 - - - body weight, NMR1 x DBA, 2 week, QTL 5 unknown 18941 Pnlf3 - - - prenatal lethal function 3 unknown 105525 Mm.383959 AI480461 - - - expressed sequence AI480461 protein-coding 102632623 XR_386998 Gm30649 - - X C3|X predicted gene, 30649 ncRNA 110115 Mm.322606 NM_001033229 ENSMUSG00000075604 Cyp11b1 AA389061|CPN1|Cyp11b|Cyp11b-1|FHI - 15 D3|15 34.29 cM cytochrome P450, family 11, subfamily b, polypeptide 1 protein-coding 19378 Mm.42016 NM_009022 ENSMUSG00000013584 Aldh1a2 AV116159|Aldh1a7|Raldh1|Raldh2 - 9 D|9 39.85 cM aldehyde dehydrogenase family 1, subfamily A2 protein-coding 102640304 XR_377235 Gm36405 - - 5 G3|5 predicted gene, 36405 ncRNA 100041303 Gm12480 - - 4|4 B2 predicted gene 12480 protein-coding 171251 Mm.377206 NM_134217 ENSMUSG00000100296 Vmn1r205 V1rh8 - 13|13 A3.1 vomeronasal 1 receptor 205 protein-coding 66070 Mm.245938 NM_023153 ENSMUSG00000004096 Cwc15 0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1 - 9|9 A2 CWC15 spliceosome-associated protein protein-coding 100034937 Vtbt16 - - - vertebral trabecular bone trait 16 unknown 105245638 Gm41066 - - 13|13 predicted gene, 41066 ncRNA 101804 Mm.473888 AV258160 - - - expressed sequence AV258160 unknown 331491 Mm.426150 NM_001033424 ENSMUSG00000073012 Fnd3c2 5031408O05Rik|Gm775 - X|X D fibronectin type III domain containing 3C2 protein-coding 194126 Mm.268536 NM_181409 ENSMUSG00000045934 Mtmr11 AI035306|BC051083|Cra - 3|3 F2.1 myotubularin related protein 11 protein-coding 108168212 Gm46495 - - 15 E1|15 predicted gene, 46495 pseudo 100381257 Mm.373662 Gm12100 - - - predicted gene 12100 protein-coding 383424 Gm5242 - - 19 A|19 heterogeneous nuclear ribonucleoprotein F pseudogene pseudo 108168477 LOC108168477 - - X F2 60S ribosomal protein L35a pseudogene pseudo 102639880 Gm29240 - - 9 E3.3|9 predicted gene 29240 pseudo 102635770 Gm26739 - - 8|8 predicted gene, 26739 ncRNA 100114901 Trdv4 - - 14|14 C2 T cell receptor delta variable 4 other 228094 Mm.440704 NM_001033295 ENSMUSG00000075256 Cerkl Gm1958|Rp26 - 2|2 C3 ceramide kinase-like protein-coding 108167383 XM_017318952 LOC108167383 - - - killer cell lectin-like receptor 4 protein-coding 100035563 Lmblgq5 - - 12 8.11 cM limb length QTL 5 unknown 102638501 XR_377326 Gm35051 - - 6 A1|6 predicted gene, 35051 ncRNA 108664 Mm.27082 NM_133826 ENSMUSG00000033793 Atp6v1h 0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13 - 1|1 A1 ATPase, H+ transporting, lysosomal V1 subunit H protein-coding 102466838 NR_106106 ENSMUSG00000099319 Mir7648 Gm27736|mmu-mir-7648 - 15|15 E3 microRNA 7648 ncRNA 60904 D8Mit66 - - 8 26.97 cM DNA segment, Chr 8, Massachusetts Institute of Technology 66 unknown 60714 D7Mit56 - - 7 9.15 cM DNA segment, Chr 7, Massachusetts Institute of Technology 56 unknown 102632331 XR_387286 Gm30431 - - 1 D|1 predicted gene, 30431 ncRNA 677044 Mm.422004 NR_003965 ENSMUSG00000074250 Gm10653 - - 9 B|9 ribsomal protein S2 pseudogene pseudo 100504711 Polr2k-ps Gm11526 - 11|11 59.01 cM polymerase (RNA) II (DNA directed) polypeptide K, pseudogene pseudo 112272 Pbwg12 C10bw7 - 12 35.51 cM postnatal body weight growth 12 unknown 100040640 Gm15285 - - 13|13 D2.2 predicted gene 15285 pseudo 23916 Ifld5 F24 - - induced in fatty liver dystrophy 5 protein-coding 207182 Mm.41757 NM_144786 ENSMUSG00000027603 Ggt7 1110017C11Rik|6330563L03Rik|Ggtl3 - 2|2 H1 gamma-glutamyltransferase 7 protein-coding 102467596 n-TScga2 n-Ts13 - 10 D3|10 nuclear encoded tRNA serine 2 (anticodon CGA) tRNA 61477 D7Mit136 - - 7 73.2 cM DNA segment, Chr 7, Massachusetts Institute of Technology 136 unknown 105243655 XR_880366 A430102A20Rik - - 11|11 E2 RIKEN cDNA A430102A20 gene protein-coding 100041814 Gm3523 - - 10|10 C2 ribosomal protein L37a pseudogene pseudo 102633872 Mm.117323 XR_375975 ENSMUSG00000097362 Gm26544 - - 3 G1|3 predicted gene, 26544 ncRNA 19142 Mm.9431 NM_008939 ENSMUSG00000027978 Prss12 Bssp-3|motopsin - 3|3 G1 protease, serine 12 neurotrypsin (motopsin) protein-coding 112351 Ichs - - 6 49.71 cM immediate cutaneous hypersensitivity QTL unknown 102637204 XR_386893 Gm34077 - - X A1.1|X predicted gene, 34077 ncRNA 19411 Mm.1273 NM_011244 ENSMUSG00000001288 Rarg Nr1b3|RAR-gamma|RARD|RARgamma2 - 15 F3|15 57.4 cM retinoic acid receptor, gamma protein-coding 98740 Mm.389225 BB116930 - - - expressed sequence BB116930 unknown 665342 Gm7594 EG665342 - 10 B5.3|10 enolase 2, gamma neuronal pseudogene pseudo 108167637 XR_001779090 Gm46101 - - 9 A1|9 predicted gene, 46101 ncRNA 61128 D5Mit395 - - 5 29.75 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 395 unknown 77017 Mm.407822 NR_040327 ENSMUSG00000087648 E130018N17Rik - - 2|2 H3 RIKEN cDNA E130018N17 gene ncRNA 102633882 Mm.411713 XR_376975 Gm26761 - - 5 C3.1|5 predicted gene, 26761 ncRNA 67077 Mm.251306 NM_001039494 ENSMUSG00000050623 Catsperz 1700019N12Rik|A430107B04Rik|MLZ-622|Tex40 - 19|19 A cation channel sperm associated auxiliary subunit zeta protein-coding 98452 Mm.131017 NR_038008 ENSMUSG00000097881 Celrr AI848258|B230209K01Rik|Celr|Gm818 - 1|1 E2.3 cerebellum expressed regulatory RNA ncRNA 108271 Eif4a-ps8 - - - eukaryotic translation initiation factor 4A, pseudogene 8 pseudo 668794 Gm9365 EG668794 - 11|11 C predicted gene 9365 pseudo 108167724 Gm29487 - - 1 E4|1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 pseudogene pseudo 387341 Mm.377904 NM_207016 ENSMUSG00000057754 Tas2r106 T2R06|Tas2r6|mGR06|mt2r44 - 6 F3|6 63.52 cM taste receptor, type 2, member 106 protein-coding 13909 Mm.482444 NM_144511 ENSMUSG00000062181 Ces3b Ces31L|Ces3L|EG13909|ES31L|Es31|Gm4738 - 8|8 D3 carboxylesterase 3B protein-coding 692186 Igkv1-136 bc1 - 6|6 C1 immunoglobulin kappa chain variable 1-136 pseudo 109709 Lith1 - - 2 47.93 cM lithogenic gene 1 unknown 100125843 Tbqt2 - - - tibia bone quality traits 2 unknown 77030 4833428M15Rik - - 14|14 RIKEN cDNA 4833428M15 gene protein-coding 101055810 Mm.358961 LOC101055810 - - - uncharacterized LOC101055810 protein-coding 624310 Gm6492 EG624310 - X|X F3 predicted gene 6492 pseudo 404490 Olfr1235-ps1 GA_x5J8B7W62NC-658712-658455|MOR231-23_p - 2|2 E1 olfactory receptor 1235, pseudogene 1 pseudo 319875 Mm.253994 NM_177024 ENSMUSG00000035861 Tmprss11b 9930019B18Rik|Tmprss11bnl - 5|5 E1 transmembrane protease, serine 11B protein-coding 16424 Mm.3227 NM_008406 ENSMUSG00000006529 Itih1 ITI-HC1|Intin1|Itih-1 - 14|14 B inter-alpha trypsin inhibitor, heavy chain 1 protein-coding 102640994 XR_387476 Gm36920 - - 1 G2|1 predicted gene, 36920 ncRNA 381634 Mm.332338 XM_006504234 ENSMUSG00000070823 Gm1043 - - 5|5 B3 predicted gene 1043 protein-coding 547182 Gm14855 EG547182 - X|X D predicted gene 14855 protein-coding 105243501 XR_871017 Gm39403 - - 9 E3.3|9 predicted gene, 39403 ncRNA 103672 Mm.441615 AI316784 - - - expressed sequence AI316784 unknown 61305 D3Mit115 - - 3 79.41 cM DNA segment, Chr 3, Massachusetts Institute of Technology 115 unknown 66199 Mm.41687 NM_025417 ENSMUSG00000032299 Commd4 1110039H05Rik - 9|9 B COMM domain containing 4 protein-coding 381043 Mm.303864 NM_001256309 ENSMUSG00000094430 Smbd1 Gm1743|Gm933 - 16|16 B3 somatomedin B domain containing 1 protein-coding 102639934 Astx4d Gm14960 - X|X 49.81 cM amplified spermatogenic transcripts X encoded 4D protein-coding 100502856 Gm15848 - - 1|1 56.89 cM predicted gene 15848 ncRNA 666808 XM_006518190 Gm10410 - - 14|14 A1 predicted gene 10410 protein-coding 100125293 Tglq5 Tglq2a|Tglq4a - - triglyceride QTL 5 unknown 68219 Mm.354445 NM_026623 ENSMUSG00000031754 Nudt21 25kDa|3110048P04Rik|5730530J16Rik|AU014860|AW549947|Cpsf5 - 8|8 C5 nudix (nucleoside diphosphate linked moiety X)-type motif 21 protein-coding 223915 Mm.291498 NM_212485 ENSMUSG00000063661 Krt73 BC067067|Kb36 - 15|15 F2 keratin 73 protein-coding 18044 Mm.4929 NM_010913 ENSMUSG00000023994 Nfya AA407810|Cbf-b|SEZ-10|SEZ10 - 17 C|17 23.99 cM nuclear transcription factor-Y alpha protein-coding 105245402 XR_001780567 Gm40864 - - 12 A1.3|12 predicted gene, 40864 protein-coding 105244383 XR_867045 Gm40002 - - 2 H3|2 predicted gene, 40002 ncRNA 75826 Mm.297431 NM_029457 ENSMUSG00000022855 Senp2 2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331 - 16|16 B1 SUMO/sentrin specific peptidase 2 protein-coding 102640182 XR_870862 Gm36311 - - 9 C|9 predicted gene, 36311 ncRNA 17772 Mm.274981 NM_019926 ENSMUSG00000031337 Mtm1 AF073996|Mtm|mKIAA4176 - X A7.3|X 36.55 cM X-linked myotubular myopathy gene 1 protein-coding 108167918 XM_017314893 Gm46290 - - 11 C|11 predicted gene, 46290 protein-coding 105247025 Gm42207 - - 3|3 predicted gene, 42207 ncRNA 214403 Mm.337613 NM_001029977 ENSMUSG00000070594 Gm4788 Cfhrc|EG214403 - 1|1 F predicted gene 4788 protein-coding 627927 Mm.391264 NM_001098842 ENSMUSG00000056815 Gm6812 EG627927 - X A7.1|X predicted gene 6812 protein-coding 100041362 XM_011251029 ENSMUSG00000095148 Gm20873 - - Y|Y A1 predicted gene, 20873 protein-coding 100034927 Epfpq4 Epf%q4 - - epididymal fat percentage QTL 4 unknown 100416211 Gm17970 - - 1|1 B ribosomal protein 10 pseudogene pseudo 100041869 Gm15407 - - 5|5 G3 predicted gene 15407 protein-coding 668896 Spcs2-ps Gm14045 - 2|2 F1 signal peptidase complex subunit 2, pseudogene pseudo 108169012 XR_001784563 Gm46893 - - 4 C3|4 predicted gene, 46893 ncRNA 102633111 XR_386094 Gm31018 - - 18 A1|18 predicted gene, 31018 ncRNA 100040839 Mm.322667 Gm2995 - - 7 C|7 predicted gene 2995 protein-coding 100526508 NR_037289 ENSMUSG00000093296 Mir3102 mmu-mir-3102 - 7 E2|7 54.45 cM microRNA 3102 ncRNA 194905 Rpl9-ps1 Gm11436 - 11|11 C ribosomal protein L9, pseudogene 1 pseudo 102636131 XR_390962 Gm13067 - - 4 E2|4 80.81 cM predicted gene 13067 protein-coding 105245947 Gm41319 - - 15|15 predicted gene, 41319 ncRNA 77860 Mm.448180 D730047E02Rik - - 12|12 RIKEN cDNA D730047E02 gene protein-coding 102636703 XR_379995 Gm33701 - - 9 F3|9 predicted gene, 33701 ncRNA 75396 Mm.173058 NM_029269 ENSMUSG00000026295 Spp2 0610038O04Rik|pp-24|spp24 - 1|1 D secreted phosphoprotein 2 protein-coding 102639975 Mm.165042 XR_874006 Gm36161 - - 13 D2.3|13 predicted gene, 36161 ncRNA 67341 Mm.382315 NM_001163614 ENSMUSG00000085111 Ascl4 1700054F16Rik|bHLHa44 - 10|10 C1 achaete-scute family bHLH transcription factor 4 protein-coding 108167581 XR_001778750 Gm46069 - - 8 A4|8 predicted gene, 46069 ncRNA 192986 Mm.194755 NM_001024926 ENSMUSG00000057778 Cyb5d2 9330151E16Rik|Gm2 - 11|11 B4 cytochrome b5 domain containing 2 protein-coding 71647 Mm.449992 NR_045168 ENSMUSG00000106583 4930447N08Rik - - 3 G1|3 RIKEN cDNA 4930447N08 gene ncRNA 12124 Mm.267006 NM_007546 ENSMUSG00000016758 Bik Biklk|Blk|Nbk - 15|15 E1 BCL2-interacting killer protein-coding 103963 Mm.188544 NM_133933 ENSMUSG00000030062 Rpn1 AU018702|D6Wsu137e|Rpn-1 - 6 D1|6 39.13 cM ribophorin I protein-coding 102465194 NR_105793 ENSMUSG00000099045 Mir6374 Gm27292|mmu-mir-6374 - 6|6 C3 microRNA 6374 ncRNA 227630 Mm.27838 NM_001100455 ENSMUSG00000069080 Lcn11 Gm109 - 2|2 A3 lipocalin 11 protein-coding 105600 D14Mgi24 AU021721 - - DNA Segment, Chr 14, Mouse Genome Informatics 24 unknown 16679 Mm.383183 NM_010667 ENSMUSG00000067614 Krt86 5430421N21Rik|AI325212|Khb4|Krt2-10|Krt2-11|MHb4 - 15 F2|15 56.9 cM keratin 86 protein-coding 225642 Mm.20298 NM_175012 ENSMUSG00000024517 Grp BLP - 18 E1|18 38.98 cM gastrin releasing peptide protein-coding 28157 D16Ium5e D16Ium5 - - DNA segment, Chr 16, Indiana University Medical 5, expressed unknown 229776 Mm.17647 NM_001080818 ENSMUSG00000033502 Cdc14a A830059A17Rik|CDC14A2|CDC14a1|Cdc14 - 3|3 G1 CDC14 cell division cycle 14A protein-coding 102634448 XR_391237 Gm32029 - - 7 B1|7 predicted gene, 32029 ncRNA 20309 Mm.64326 NM_011339 ENSMUSG00000029375 Cxcl15 Il8|Scyb15|lungkine|weche - 5 E1|5 44.78 cM chemokine (C-X-C motif) ligand 15 protein-coding 319934 Mm.102970 NM_177324 ENSMUSG00000038371 Sbf2 4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1 - 7|7 E3 SET binding factor 2 protein-coding 26874 Mm.295456 NM_011994 ENSMUSG00000055782 Abcd2 ABC39|ALDL1|ALDR|ALDRP - 15|15 E3 ATP-binding cassette, sub-family D (ALD), member 2 protein-coding 108467 Ms42 MMS42 - - minisatellites detected by probe MMS42 other 105245755 Gm41154 - - 14|14 predicted gene, 41154 protein-coding 100046707 Gm17777 - - 1|1 E2.3 predicted gene, 17777 pseudo 108168888 XR_001783944 Gm46818 - - 3 F2.2|3 predicted gene, 46818 ncRNA 102631738 Gm30002 - - 1|1 predicted gene, 30002 ncRNA 108168921 XR_001784065 Gm46838 - - 3 F2.2|3 predicted gene, 46838 ncRNA 19265 Mm.271937 NM_016933 ENSMUSG00000045826 Ptprcap AI605264|CD-45-AP|LPAP|LSM-1 - 19 A|19 3.86 cM protein tyrosine phosphatase, receptor type, C polypeptide-associated protein protein-coding 231760 Mm.233996 NM_001081388 ENSMUSG00000029420 Rimbp2 A930033C01Rik|mKIAA0318 - 5|5 G1.3 RIMS binding protein 2 protein-coding 67573 Mm.178767 NM_053083 ENSMUSG00000025185 Loxl4 4833426I20Rik|Loxc - 19|19 C3 lysyl oxidase-like 4 protein-coding 257831 Olfr1108-ps1 EG257831|GA_x5J8B7W3Y5M-419033-418135|Gm5024 - 2 D|2 olfactory receptor 1108, pseudogene 1 pseudo 102639693 XR_374851 Gm35946 - - 2 E3|2 predicted gene, 35946 ncRNA 432709 Ighv8-9 EG432709|Gm5440 - 12|12 F2 immunoglobulin heavy variable V8-9 other 102637817 XR_384197 Gm34531 - - 15 D3|15 predicted gene, 34531 ncRNA 102635985 Mm.372733 XR_390681 Gm11269 - - 4 C3|4 39.4 cM predicted gene 11269 ncRNA 57279 Mm.29666 NM_020520 ENSMUSG00000032602 Slc25a20 1110007P09Rik|C78826|Cact|mCAC - 9|9 F2 solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20 protein-coding 69066 Mm.40679 NM_001163473 ENSMUSG00000078607 1810010H24Rik - - 11|11 E1 RIKEN cDNA 1810010H24 gene protein-coding 100416922 Gm11790 - - 11|11 E2 bromodomain containing 4 pseudogene pseudo 76105 5830456J23Rik - - 8|8 RIKEN cDNA 5830456J23 gene protein-coding 102631578 XR_379686 Gm29881 - - 9 E3.1|9 predicted gene, 29881 ncRNA 112418 Mm.78287 NM_053216 ENSMUSG00000032611 1700102P08Rik AI593206 - 9|9 F2 RIKEN cDNA 1700102P08 gene protein-coding 387198 NR_029589 ENSMUSG00000065502 Mir202 Mirn202|mir-202|mmu-mir-202 - 7|7 F4 microRNA 202 ncRNA 13082 Mm.42230 NM_007811 ENSMUSG00000024987 Cyp26a1 Cyp26|P450RA|P450RAI|RAH - 19|19 C2 cytochrome P450, family 26, subfamily a, polypeptide 1 protein-coding 668160 Gm9012 EG668160 - 14|14 C3 high mobility group box 3 pseudogene pseudo 56471 Mm.35474 NM_019675 ENSMUSG00000022044 Stmn4 Lagl|R75359|RB3 - 14|14 D1 stathmin-like 4 protein-coding 665391 Gm7617 EG665391 - 1|1 A3 adaptor-related protein complex 2, beta 1 subunit pseudogene pseudo 102640788 XR_380912 Gm36771 - - 10 D3|10 predicted gene, 36771 ncRNA 85146 D4Mit256 - - 4 86.16 cM DNA segment, Chr 4, Massachusetts Institute of Technology 256 unknown 100315604 Mm.474662 Gm10401 - - 5 F|5 55.99 cM predicted gene 10401 ncRNA 100503999 Mm.484617 XR_104961 Gm20005 Gm43153 - 5 G3|5 89.18 cM predicted gene, 20005 ncRNA 69884 Mm.340720 2010300F17Rik - - 11|11 RIKEN cDNA 2010300F17 gene unknown 102638895 XR_374955 Gm35347 - - 2 F1|2 predicted gene, 35347 ncRNA 61637 D8Mit236 - - 8 40.22 cM DNA segment, Chr 8, Massachusetts Institute of Technology 236 unknown 100034780 Sluc25 - - - susceptibility to lung cancer 25 unknown 69151 Mm.464434 NM_026963 ENSMUSG00000028990 Lzic 1810030J04Rik|AW047580 - 4|4 E2 leucine zipper and CTNNBIP1 domain containing protein-coding 117563 Bswt - - 1|1 belly spot with white toes protein-coding 230674 Mm.234234 NM_172382 ENSMUSG00000033326 Kdm4a D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677 - 4 D2.1|4 54.31 cM lysine (K)-specific demethylase 4A protein-coding 100124449 NR_030575 ENSMUSG00000106233 Mir509 Mirn509|mmu-mir-509 - X A7.1|X microRNA 509 ncRNA 102639214 XR_379535 Gm35574 - - 9 B|9 predicted gene, 35574 ncRNA 100416912 Gm18315 - - 13|13 D2.2 SCAN domain containing 3 pseudogene pseudo 404524 Olfr1486-ps1 - - 19|19 A olfactory receptor 1486, pseudogene 1 pseudo 19700 Mm.8752 NM_009047 ENSMUSG00000000359 Rem1 E030011C07Rik|Ras|Rem - 2|2 H1 rad and gem related GTP binding protein 1 protein-coding 238377 Mm.32160 NM_175493 ENSMUSG00000047415 Gpr68 BB131428|Ogr1 - 12|12 E G protein-coupled receptor 68 protein-coding 100041490 XR_140686 Gm20875 - - 4|4 E1 predicted gene, 20875 pseudo 19490 Rb(15.17)64Lub Rb64Lub - - Robertsonian translocation, Chr 15 and 17, Lubeck 64 other 78203 Mm.444758 4930551E15Rik - - 7|7 RIKEN cDNA 4930551E15 gene protein-coding 62145 D13Mit86 - - 13 12.94 cM DNA segment, Chr 13, Massachusetts Institute of Technology 86 unknown 67234 Mm.435694 2810449D17Rik - - - RIKEN cDNA 2810449D17 gene unknown 100124643 NR_037263 ENSMUSG00000096512 Mir467a-8 Gm22705|Mirn467a-8|mmu-mir-467a-8 - 2 A1|2 microRNA 467a-8 ncRNA 60932 D9Mit82 - - 9 71.33 cM DNA segment, Chr 9, Massachusetts Institute of Technology 82 unknown 105245715 Gm41123 - - 14|14 predicted gene, 41123 ncRNA 100042690 Mm.271314 NM_001270423 ENSMUSG00000089859 Gm13769 Gm13766 - 2 E1|2 predicted gene 13769 protein-coding 102634956 LOC102634956 - - 18 C 60S ribosomal protein L7a pseudogene pseudo 20439 Mm.2847 NM_009174 ENSMUSG00000036432 Siah2 AA415433|Sinh2 - 3 D|3 28.68 cM siah E3 ubiquitin protein ligase 2 protein-coding 17450 Mm.250060 NM_010816 ENSMUSG00000022652 Morc1 Morc - 16 B5|16 30.75 cM microrchidia 1 protein-coding 102632721 XR_378486 Gm30717 Gm44766 - 7 F3|7 predicted gene, 30717 ncRNA 105246959 XR_880562 Gm42151 - - 5 F|5 predicted gene, 42151 ncRNA 22151 Mm.422827 NM_009450 ENSMUSG00000058672 Tubb2a M(beta)2|Tubb2 - 13 A3.3|13 14.03 cM tubulin, beta 2A class IIA protein-coding 100384876 Gm15617 - - 5 C3.2|5 38.44 cM ribosomal protein L7A pseudogene pseudo 105243761 XR_875421 Gm39556 - - 15 D3|15 predicted gene, 39556 ncRNA 27824 504N12F - - - DNA segment, 504N12F (Research Genetics) unknown 108168581 XM_017318785 LOC108168581 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 17118 Mm.30059 NM_008538 ENSMUSG00000069662 Marcks Macs|PKCSL - 10 B1|10 19.49 cM myristoylated alanine rich protein kinase C substrate protein-coding 258805 Mm.223232 NM_146809 ENSMUSG00000044994 Olfr1426 MOR239-1 - 19|19 A olfactory receptor 1426 protein-coding 12856 Mm.27396 NM_001017429 ENSMUSG00000046516 Cox17 AI037035 - 16|16 B3-B4 cytochrome c oxidase assembly protein 17 protein-coding 110791 Igk-V10C - - - immunoglobulin kappa chain variable 10 (V10)C other 19848 NR_004414 ENSMUSG00000065944 Rnu2-10 Rnu2|nmf291 - 11 D|11 65.48 cM U2 small nuclear RNA 10 snRNA 237256 Mm.140055 NM_172785 ENSMUSG00000039981 Zc3h12d D730019B10Rik|TFL - 10|10 A1 zinc finger CCCH type containing 12D protein-coding 102632171 Gm30317 - - 4|4 predicted gene, 30317 ncRNA 114284 Manh17 QTL-SH12.1 - - mandible shape 17 unknown 100047372 LOC100047372 - - 7|7 ribosomal protein L22 pseudogene pseudo 30877 Mm.88512 NM_153547 ENSMUSG00000042354 Gnl3 Ns - 14 B|14 19.09 cM guanine nucleotide binding protein-like 3 (nucleolar) protein-coding 628490 Mm.246518 NR_028441 Vmn2r-ps60 Casr-rs4|Gprc2a-rs4 - 7|7 B3 vomeronasal 2, receptor, pseudogene 60 pseudo 108168160 XR_001781256 Gm46454 - - 14 C1|14 predicted gene, 46454 ncRNA 626436 Vmn2r-ps31 EG626436|Gm6675 - 6|6 F2 vomeronasal 2, receptor, pseudogene 31 pseudo 74987 Mm.107996 NM_001201395 ENSMUSG00000079525 Cldn34d 4930468A15Rik - X|X A7.3 claudin 34D protein-coding 105245825 XR_874834 Gm41215 - - 14 D3|14 predicted gene, 41215 ncRNA 100035916 Abfp4 - - - abdominal fat percentage 4 unknown 105244566 XR_867681 Gm40159 - - 3 H1|3 predicted gene, 40159 ncRNA 100035161 Nsila7 - - 8 63.1 cM novelty/stress induced locomotor activation 7 unknown 100740 Mm.23370 NR_102275 AI839979 - - 5 B1|5 expressed sequence AI839979 ncRNA 61879 D1Mit328 - - 1 33.75 cM DNA segment, Chr 1, Massachusetts Institute of Technology 328 unknown 75173 Mm.331798 NM_029196 ENSMUSG00000044556 Tex38 4930544O15Rik|Theg4 - 4|4 D1 testis expressed 38 protein-coding 114228 Mm.449428 NM_053243 ENSMUSG00000062751 Prss1 Try-1|Try1|Trygn16 - 6 B1|6 19.6 cM protease, serine 1 (trypsin 1) protein-coding 76561 Mm.33824 NM_029655 ENSMUSG00000028007 Snx7 2510028H01Rik - 3|3 G1 sorting nexin 7 protein-coding 102633174 XR_377177 Gm31068 - - 5 G2|5 predicted gene, 31068 ncRNA 19765 Mm.17009 NM_009067 ENSMUSG00000024096 Ralbp1 RLIP76|Rip1 - 17 E1.1|17 35.26 cM ralA binding protein 1 protein-coding 102631607 Mm.421298 XR_384130 ENSMUSG00000116299 Gm29904 - - 15 D1|15 predicted gene, 29904 ncRNA 106780814 Obox4-ps10 - - 7 A1|7 oocyte specific homeobox 4, pseudogene 10 pseudo 19506 Rb(2.16)3Mpl Rb3Mpl - - Robertsonian translocation, Chr 2 and 16, Montpellier 3 other 30927 Mm.103673 NM_013914 ENSMUSG00000006587 Snai3 AI643946|Smuc|Zfp293 - 8|8 E1 snail family zinc finger 3 protein-coding 72612 Mm.25263 NM_028299 ENSMUSG00000038005 Hpf1 2700029M09Rik|C230006B22Rik|C4orf27 - 8|8 B3.1 histone PARylation factor 1 protein-coding 105243265 XR_879132 Gm39233 - - 8 D1|8 predicted gene, 39233 ncRNA 105243592 XR_874010 Gm39470 - - 13 D2.3|13 predicted gene, 39470 ncRNA 56177 Mm.43278 NM_019498 ENSMUSG00000026833 Olfm1 AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3 - 2|2 A3 olfactomedin 1 protein-coding 53053 J14SP6 - - - DNA segment, J14SP6 unknown 105243004 Mm.323065 XR_869811 LOC105243004 - - 7 E1 uncharacterized LOC105243004 ncRNA 13638 Mm.331159 NM_010108 ENSMUSG00000028039 Efna3 AW494418|EFL-2|Ehk1-L|Epl3|LERK-3 - 3 F1|3 39.06 cM ephrin A3 protein-coding 100036364 Skmw15 C57BL/6J and DBA/2JSkmw15 - 6 64.03 cM skeletal muscle weight 15 unknown 100043229 Mm.458666 NR_033484 ENSMUSG00000109143 Gm10046 - - 7|7 A3 predicted gene 10046 ncRNA 60728 DXMit57 - - X 16.24 cM DNA segment, Chr X, Massachusetts Institute of Technology 57 unknown 56315 Mm.10909 NM_019799 ENSMUSG00000030549 Rhcg BB065800 - 7 D2|7 45.09 cM Rhesus blood group-associated C glycoprotein protein-coding 102635935 Mm.403806 XR_388795 Gm12320 - - 11 B3|11 43.21 cM predicted gene 12320 ncRNA 75958 Mm.399749 NR_131019 ENSMUSG00000096932 5033403F01Rik - - 13|13 A3.3 RIKEN cDNA 5033403F01 gene ncRNA 272382 Mm.8012 NM_019866 ENSMUSG00000008193 Spib Spi-B - 7 B3|7 28.83 cM Spi-B transcription factor (Spi-1/PU.1 related) protein-coding 18591 Mm.144089 NM_011057 ENSMUSG00000000489 Pdgfb PDGF-B|Sis - 15 E1|15 37.85 cM platelet derived growth factor, B polypeptide protein-coding 100416617 Gm18166 - - 2|2 E1 olfactory receptor 1219 pseudogene pseudo 102638270 XR_001785293 Gm34872 - - 6 D1|6 predicted gene, 34872 ncRNA 102640533 XR_381607 Gm36571 - - 12 C1|12 predicted gene, 36571 ncRNA 22625 Mm.246566 NM_011737 ENSMUSG00000051590 Map3k19 Ysk4 - 1|1 E3 mitogen-activated protein kinase kinase kinase 19 protein-coding 12159 Mm.6813 NM_007554 ENSMUSG00000021835 Bmp4 Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1 - 14 C1|14 23.95 cM bone morphogenetic protein 4 protein-coding 170625 Mm.33721 NM_130796 ENSMUSG00000042364 Snx18 Snag1 - 13|13 D2.2 sorting nexin 18 protein-coding 100416656 Gm18171 - - X|X C3 predicted gene, 18171 pseudo 414079 Mm.444282 NR_130176 ENSMUSG00000090565 4930405O22Rik - - 17 E1.1|17 RIKEN cDNA 4930405O22 gene ncRNA 62310 D1Mit272 - - 1 88.77 cM DNA segment, Chr 1, Massachusetts Institute of Technology 272 unknown 71494 Mm.441048 8430406P12Rik - - 13|13 RIKEN cDNA 8430406P12 gene protein-coding 53610 Mm.280069 NM_023144 ENSMUSG00000031311 Nono AA407051|AV149256|NRB54|P54NRB|nonA - X|X D non-POU-domain-containing, octamer binding protein protein-coding 102642556 XR_868543 Gm38615 - - 5 G1.3|5 predicted gene, 38615 ncRNA 102636963 XM_006523121 Gm33888 - - 16 C3.3|16 predicted gene, 33888 protein-coding 116751 Cocrb6 - - 5 47.29 cM cocaine related behavior 6 unknown 102467241 n-TAtgc4 n-Ta33 - X F1|X nuclear encoded tRNA alanine 4 (anticodon TGC) tRNA 108060 Nkx2-7 Nkx-2.7 - - NK2 transcription factor homolog, locus 7 (Drosophila) protein-coding 102637892 XR_383570 Gm34588 - - 14 D2|14 predicted gene, 34588 ncRNA 18951 Mm.20365 NM_213614 ENSMUSG00000072214 Sept5 Cdcrel-1|Cdcrel1|Pnutl1 - 16 A3|16 11.53 cM septin 5 protein-coding 51812 Mm.383472 NM_016766 ENSMUSG00000037570 Mcrs1 C78274|ICP22BP|MSP58|P78 - 15|15 F1 microspherule protein 1 protein-coding 73366 Mm.396157 NR_045922 ENSMUSG00000086951 1700051A21Rik - - 11|11 B4 RIKEN cDNA 1700051A21 gene ncRNA 320244 Mm.132172 NM_177114 ENSMUSG00000012609 Ttll5 1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998 - 12|12 D2 tubulin tyrosine ligase-like family, member 5 protein-coding 258137 Olfr647-ps1 MOR0-5P - 7|7 E3 olfactory receptor 647, pseudogene 1 pseudo 61027 D7Mit152 - - 7 2.71 cM DNA segment, Chr 7, Massachusetts Institute of Technology 152 unknown 68479 Mm.271715 NM_026737 ENSMUSG00000061360 Phf5a 1110007B08Rik - 15|15 E1 PHD finger protein 5A protein-coding 62783 D15Mit221 - - 15 19.62 cM DNA segment, Chr 15, Massachusetts Institute of Technology 221 unknown 97861 C77788 - - - expressed sequence C77788 unknown 105247064 Gm42239 - - 5|5 predicted gene, 42239 ncRNA 100043703 Tpt1-ps3 Gm14456 - 6|6 D3 tumor protein, translationally-controlled, pseudogene 3 pseudo 20462 Mm.210352 NM_009186 ENSMUSG00000022858 Tra2b 5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta - 16 B1|16 13.18 cM transformer 2 beta protein-coding 102633190 XR_385074 2410003I16Rik - - 16|16 C4 RIKEN cDNA 2410003I16 gene ncRNA 101055761 Gm15610 - - 5 A1|5 3.51 cM coiled-coil domain-containing protein 72 pseudogene pseudo 625018 Mm.439678 NM_011413 C4a Slp|SlpA - 17 B1|17 18.37 cM complement component 4A (Rodgers blood group) protein-coding 71390 Mm.105251 NM_027780 Slc6a19os 5430425J12Rik - 13|13 C1 solute carrier family 6 (neurotransmitter transporter), member 19, opposite strand protein-coding 100040173 Gm11849 - - 4|4 A2 predicted gene 11849 protein-coding 105245059 XR_871130 Gm40564 - - 9 F1|9 predicted gene, 40564 ncRNA 100042834 Mm.288136 Gm4055 - - X A1.1|X predicted gene 4055 protein-coding 102638057 XR_380648 Gm34712 - - 10 C1|10 predicted gene, 34712 ncRNA 100417615 Gm13243 - - 4|4 E1 tousled-like kinase 2 pseudogene pseudo 60866 D6Mit57 - - 6 77.37 cM DNA segment, Chr 6, Massachusetts Institute of Technology 57 unknown 258710 Mm.377647 NM_146715 ENSMUSG00000050788 Olfr419 MOR267-6 - 1|1 H3 olfactory receptor 419 protein-coding 108167832 Gm29389 - - 1 C1.3|1 predicted gene 29389 pseudo 102634300 Mm.445281 XR_381781 LOC102634300 - - 12 D1 uncharacterized LOC102634300 ncRNA 105727 Mm.103568 NM_134086 ENSMUSG00000023169 Slc38a1 AA408026|AA409865|AL022800|AU015942|NAT2 - 15|15 F1 solute carrier family 38, member 1 protein-coding 53332 Mm.219672 NM_016985 ENSMUSG00000015214 Mtmr1 AW049210 - X|X A7.3 myotubularin related protein 1 protein-coding 100041086 Gm3131 Cct7-5p - 13|13 B1 chaperonin containing Tcp1, subunit 7 (eta) pseudogene pseudo 19128 Mm.127156 NM_011173 ENSMUSG00000022912 Pros1 AW214361 - 16|16 C1.3 protein S (alpha) protein-coding 12504 Mm.2209 NM_013488 ENSMUSG00000023274 Cd4 L3T4|Ly-4 - 6 F2|6 59.17 cM CD4 antigen protein-coding 546894 Gm5989 EG546894 - 6|6 A3.1 Crn, crooked neck-like 1 pseudogene pseudo 382301 Mm.304354 NM_201530 ENSMUSG00000101155 Sly - - Y|Y C2 Sycp3 like Y-linked protein-coding 56552 Mm.23795 NM_019917 ENSMUSG00000096630 Vmn2r26 V2R1|V2r1b - 6|6 F2 vomeronasal 2, receptor 26 protein-coding 105243215 XR_870506 Gm39195 - - 8 B3.3|8 predicted gene, 39195 ncRNA 100035444 Brml7 - - - bone response to mechanical loading 7 unknown 50997 Mm.36242 NM_016695 ENSMUSG00000017314 Mpp2 D11Bwg0652e|Dlg2|Dlgh2|Pals4 - 11 D|11 65.48 cM membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) protein-coding 19355 Mm.38376 NM_011232 ENSMUSG00000022248 Rad1 mRAD1 - 15|15 A1 RAD1 checkpoint DNA exonuclease protein-coding 670198 Mm.484132 Gm10734 - - 13|13 predicted gene 10734 unknown 102636642 XR_375699 Gm33650 - - 3 D|3 predicted gene, 33650 ncRNA 100217458 NR_028553 ENSMUSG00000077221 Snord67 MBII-166 - 2 E1|2 small nucleolar RNA, C/D box 67 snoRNA 18439 Mm.42026 NM_011027 ENSMUSG00000029468 P2rx7 AI467586|P2X(7)|P2X7R - 5|5 F purinergic receptor P2X, ligand-gated ion channel, 7 protein-coding 100418016 Gm18950 - - 11|11 B5 insulin-like growth factor binding protein 4 pseudogene pseudo 217305 Mm.275986 NM_145437 ENSMUSG00000034641 Cd300ld 4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5 - 11|11 E2 CD300 molecule like family member d protein-coding 73670 Mm.82875 NM_001039566 ENSMUSG00000075571 Defb30 2410125J01Rik|4930449O14Rik|BD-30|mBD-30 - 14|14 D1 defensin beta 30 protein-coding 100043059 Gm4199 - - 7 E3|7 predicted gene 4199 pseudo 112163559 BB255381 - - - expressed sequence BB255381 protein-coding 105244284 XR_866704 Gm39923 - - 2 F1|2 predicted gene, 39923 ncRNA 103135 Mm.244183 NM_133992 ENSMUSG00000005682 Pan2 1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710 - 10|10 D3 PAN2 poly(A) specific ribonuclease subunit protein-coding 105243074 XR_870011 Gm39103 - - 7 F3|7 predicted gene, 39103 ncRNA 100862042 XM_011251042 ENSMUSG00000096820 Gm21425 - - Y A1|Y predicted gene, 21425 protein-coding 13078 Mm.214016 NM_009994 ENSMUSG00000024087 Cyp1b1 CP1B|P4501b1 - 17|17 E3 cytochrome P450, family 1, subfamily b, polypeptide 1 protein-coding 108168755 XR_001783304 Gm46740 - - 2 C1.1|2 predicted gene, 46740 ncRNA 100417320 Gm18531 - - 15|15 B3.1 crumbs homolog 1 pseudogene pseudo 258293 Mm.222993 NM_146296 ENSMUSG00000071481 Olfr437 MOR261-11 - 6|6 B2.1 olfactory receptor 437 protein-coding 102640745 Mm.33097 XR_378915 Gm36741 - - 8 A4|8 predicted gene, 36741 ncRNA 14599 Mm.343934 NM_008117 ENSMUSG00000020713 Gh Gh1|Ghb1 - 11 E1|11 68.89 cM growth hormone protein-coding 18716 Mm.214755 NM_008843 ENSMUSG00000058499 Pip GCDFP-15|GP17|SMGP - 6 B2.1|6 20.05 cM prolactin induced protein protein-coding 102467496 n-TCgca23 n-Tc23 - 6 B2.3|6 nuclear encoded tRNA cysteine 23 (anticodon GCA) tRNA 108169175 XR_001785397 LOC108169175 - - 6 G1 uncharacterized LOC108169175 ncRNA 105244668 Gm40234 - - 12|12 predicted gene, 40234 ncRNA 632115 Gm7081 - - 5|5 E2 predicted gene 7081 protein-coding 98796 AA511250 - - - expressed sequence AA511250 unknown 105245568 XR_873703 Gm41009 - - 13 C3|13 predicted gene, 41009 ncRNA 17768 Mm.443 NM_008638 ENSMUSG00000005667 Mthfd2 AW558851|NMDMC - 6 C3|6 35.94 cM methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase protein-coding 100503091 Gm19549 - - 7|7 33.23 cM predicted gene, 19549 protein-coding 80902 Mm.132196 NM_030713 ENSMUSG00000025602 Zfp202 C130037E22Rik|Znf202 - 9|9 A5.1 zinc finger protein 202 protein-coding 229933 Mm.331420 NM_178697 ENSMUSG00000036960 Clca2 4732440A06|AI586120|Clca5 - 3|3 H2 chloride channel accessory 2 protein-coding 105243546 XR_871306 Gm39437 - - 9 F3|9 predicted gene, 39437 ncRNA 74680 Mm.488118 NR_153406 ENSMUSG00000114290 4930435F18Rik - - 13|13 D2.3 RIKEN cDNA 4930435F18 gene ncRNA 102636010 Gm15603 - - 1 A2|1 2.49 cM predicted gene 15603 pseudo 211945 Mm.478321 NM_181073 ENSMUSG00000060716 Plekhh1 AV308913|C77772|D630024D12Rik|mKIAA1200 - 12|12 C3 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 protein-coding 102636074 XR_383679 Gm33246 - - 14 E2.1|14 predicted gene, 33246 ncRNA 16438 Mm.227912 NM_010585 ENSMUSG00000030102 Itpr1 D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo - 6 E1|6 49.74 cM inositol 1,4,5-trisphosphate receptor 1 protein-coding 234863 Mm.246601 NR_040702 ENSMUSG00000110599 6030466F02Rik - - 8|8 E1 RIKEN cDNA 6030466F02 gene ncRNA 668047 Rnf170-ps EG668047|Gm8946 - 7 A3|7 ring finger protein 170, pseudogene pseudo 667203 Gm8512 EG667203 - 10|10 C2 predicted gene 8512 pseudo 100039964 Mm.426823 XR_377237 Gm15411 - - 5|5 G3 predicted gene 15411 protein-coding 77421 Mm.132133 C030013E06Rik - - 11|11 D RIKEN cDNA C030013E06 gene protein-coding 102639089 Gm21768 - - Y|Y predicted gene, 21768 protein-coding 78792 Mm.490781 4930432F04Rik - - 5|5 RIKEN cDNA 4930432F04 gene unknown 14325 Mm.30357 NM_010240 ENSMUSG00000050708 Ftl1 Ftl|Ftl-1|L-ferritin - 7|7 B3 ferritin light polypeptide 1 protein-coding 493155 Schol - - - serum cholesterol level unknown 102633094 Gm31004 - - 14|14 predicted gene, 31004 pseudo 83410 Mm.22031 NM_031249 ENSMUSG00000053536 Cstf2t 64kDa|C77975|tCstF-64|tauCstF-64 - 19|19 C1 cleavage stimulation factor, 3' pre-RNA subunit 2, tau protein-coding 114538 Bbaa5 Bb5 - 6 69.36 cM B.burgdorferi-associated arthritis 5 unknown 105243029 XR_001778349 Gm39070 - - 7 F1|7 predicted gene, 39070 ncRNA 70012 Mm.26542 NM_144527 ENSMUSG00000037443 Cep85 2410030J07Rik|AI173272|AI173504|Ccdc21 - 4|4 D3 centrosomal protein 85 protein-coding 108903 Mm.23686 NM_029878 ENSMUSG00000039230 Tbcd 2310057L06Rik|A030005L14Rik|mKIAA0988 - 11|11 E2 tubulin-specific chaperone d protein-coding 66421 Mm.25137 NM_025555 ENSMUSG00000036873 2410004B18Rik 4930572C24Rik - 3|3 H2 RIKEN cDNA 2410004B18 gene protein-coding 110208 Mm.252080 NM_025801 ENSMUSG00000028961 Pgd 0610042A05Rik|AU019875|C78335 - 4 E2|4 78.96 cM phosphogluconate dehydrogenase protein-coding 624286 XR_878585 Cfhr3 EG624286 - 1|1 F complement factor H-related 3 protein-coding 72446 Mm.24138 NM_175181 ENSMUSG00000032841 Prr5l 2600010E01Rik|4833411O04Rik|Protor-2|Protor2 - 2|2 E2 proline rich 5 like protein-coding 97102 C85600 - - - expressed sequence C85600 unknown 102635929 XR_387975 Gm33141 - - 8 D3|8 predicted gene, 33141 ncRNA 108396 Pmv82 - - - polytropic murine leukemia virus 82 other 100462963 Gm16260 - - 14 E2.3|14 50.9 cM mitochondrial ribosomal protein S36 pseudogene pseudo 628239 Gm14411 Gm14415 - 2|2 H4 predicted gene 14411 pseudo 100040429 XM_011251093 Gm20842 - - Y|Y C3 predicted gene, 20842 protein-coding 100038402 Mm.451264 BC025933 - - - cDNA sequence BC025933 protein-coding 68910 Mm.2464 NM_020589 ENSMUSG00000068551 Zfp467 1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467 - 6|6 B2.3 zinc finger protein 467 protein-coding 61976 D8Mit319 - - 8 61.15 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 319 unknown 77922 NM_030006 A030005L19Rik - - 1|1 C5 RIKEN cDNA A030005L19 gene protein-coding 17864 Mm.479 NM_008651 ENSMUSG00000025912 Mybl1 A-myb|G1-419-6|repro9 - 1 A2|1 2.08 cM myeloblastosis oncogene-like 1 protein-coding 22694 Mm.290596 NM_011755 ENSMUSG00000063281 Zfp35 Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68 - 18|18 A2 zinc finger protein 35 protein-coding 111391 Emv18 Emv-18 - - endogenous ecotropic MuLV 18 other 735256 NR_035408 ENSMUSG00000096583 Mir669a-1 Mir669a-1a|Mirn669a-1|Mirn669a-1a|mir-669a-1 - 2 A1|2 microRNA 669a-1 ncRNA 268973 Mm.311884 NM_001033367 ENSMUSG00000039193 Nlrc4 9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF - 17|17 E2 NLR family, CARD domain containing 4 protein-coding 108168644 XM_017318852 Gm46717 - - Y E|Y predicted gene, 46717 protein-coding 105559 Mm.238266 NM_175341 ENSMUSG00000022139 Mbnl2 1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072 - 14|14 E4 muscleblind like splicing factor 2 protein-coding 73729 Mm.333743 NM_001243908 ENSMUSG00000099689 Zfp383 1110003H10Rik - 7|7 B1 zinc finger protein 383 protein-coding 84004 Mm.275003 NM_023061 ENSMUSG00000032135 Mcam 1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin - 9|9 A5.1 melanoma cell adhesion molecule protein-coding 100036093 Avptaq3 - - 13 45.05 cM Avp transcript abundance QTL 3 unknown 57879 AA517463 - - - EST AA517463 unknown 111382 Pad1 Pad-1 - - MMTV LTR integration site 1 other 240869 Mm.296127 NM_173424 ENSMUSG00000043467 Zbtb37 D430004I08Rik - 1|1 H2.1 zinc finger and BTB domain containing 37 protein-coding 223978 Mm.86360 NM_146067 ENSMUSG00000065979 Cpped1 C530044N13Rik - 16|16 A1 calcineurin-like phosphoesterase domain containing 1 protein-coding 108168590 XM_017318794 ENSMUSG00000100972 LOC108168590 - - Y C1 X-linked lymphocyte-regulated protein PM1-like protein-coding 108168586 XM_017318790 LOC108168586 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 61428 D5Mit233 - - 5 28.55 cM DNA segment, Chr 5, Massachusetts Institute of Technology 233 unknown 21062 T(11A2;16B3)238Dn T(11;16)238Dn|T238Dn - - reciprocal translocation, Chr 11, cytogenetic band A2; and Chr 16, cytogenetic band B3, Davisson 238 other 51853 D4Sut1e - - - DNA segment, Chr 4, Sutcliffe 1 expressed unknown 100417734 Gm18793 - - 16|16 A3 poly(A) binding protein, cytoplasmic 1 pseudogene pseudo 100416203 Gm13751 - - 1|1 C2 ribosomal protein S2 pseudogene pseudo 100042653 Mm.465202 NM_001105068 ENSMUSG00000091651 Vmn2r36 100042724|Gm3991 - 7|7 A1 vomeronasal 2, receptor 36 protein-coding 102465585 NR_105935 ENSMUSG00000099152 Mir6969 Gm27305|mmu-mir-6969 - 17|17 A3.3 microRNA 6969 ncRNA 108095 Tcra-V13.3 - - - T cell receptor alpha variable region family 13 subfamily 3 other 62323 D6Mit118 - - 6 25.4 cM DNA segment, Chr 6, Massachusetts Institute of Technology 118 unknown 71522 Mm.23336 NM_027819 ENSMUSG00000040471 Ggt6 9030405D14Rik|AI427679|AW490214 - 11|11 B4 gamma-glutamyltransferase 6 protein-coding 78167 XM_017313158 4930439D14Rik - - 1|1 G3 RIKEN cDNA 4930439D14 gene protein-coding 622075 Gm6283 EG622075 - 10|10 D3 predicted gene 6283 pseudo 76890 Mm.311874 NM_133771 ENSMUSG00000058704 Memo1 0610016J10Rik|D930048L02Rik - 17|17 E2 mediator of cell motility 1 protein-coding 107702 Mm.197493 NM_145135 ENSMUSG00000038650 Rnh1 AW546468|C80305|RNH - 7|7 F5 ribonuclease/angiogenin inhibitor 1 protein-coding 100885825 NR_049186 ENSMUSG00000106347 Mir5615-1 mir-5615-1|mmu-mir-5615-1 - 10|10 C1 microRNA 5615-1 ncRNA 98541 Mm.442310 AU019278 - - - expressed sequence AU019278 unknown 112123 Szs1 Kasz1 - - seizure susceptibility 1 unknown 100502751 Gm17251 - - 17|17 17.98 cM predicted gene, 17251 ncRNA 21390 Mm.4545 NM_009325 ENSMUSG00000034881 Tbxa2r TP|TXA2-R - 10 C1|10 39.72 cM thromboxane A2 receptor protein-coding 214593 Mm.358846 NM_177610 ENSMUSG00000068452 Duox2 A430065P05Rik|LNOX2|NOXEF2|P138-TOX|THOX2 - 2|2 E5 dual oxidase 2 protein-coding 61743 D4Mit273 - - 4 26.27 cM DNA segment, Chr 4, Massachusetts Institute of Technology 273 unknown 100039606 Gm2336 - - 18|18 A1 high mobility group AT-hook I, related sequence 1 pseudogene pseudo 100036242 Kidpq1 Kid%q1 - - kidney weight percentage QTL 1 unknown 13502 Drr2 - - 11|11 A3.2 developmentally regulated repeat element-containing transcript 2 other 232358 Mm.469878 NM_001104632 ENSMUSG00000091260 Vmn2r19 EG232358 - 6|6 F2 vomeronasal 2, receptor 19 protein-coding 100042035 Gm12038 - - 11|11 A3.1 predicted gene 12038 protein-coding 102636445 XR_385473 Gm33508 - - 17 A3.3|17 predicted gene, 33508 ncRNA 100503680 Mm.446301 Rapgef4os2 - - 2|2 Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2 unknown 99152 Mm.291624 NM_175300 ENSMUSG00000026965 Anapc2 9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406 - 2|2 A3 anaphase promoting complex subunit 2 protein-coding 85105 DXMit211 - - X 39.95 cM DNA Segment, Chr X Massachusetts Institute of Technology 211 unknown 108167813 XR_001779785 Gm46227 - - 10 B4|10 predicted gene, 46227 ncRNA 100042688 Mm.465205 XM_001478969 Gm10302 - - 7|7 A1 predicted gene 10302 protein-coding 62345 D1Mit408 - - 1 94.97 cM DNA segment, Chr 1, Massachusetts Institute of Technology 408 unknown 62803 D14Mit214 - - - DNA segment, Chr 14, Massachusetts Institute of Technology 214 unknown 105245232 XR_871876 Gm40716 - - 10 C1|10 predicted gene, 40716 ncRNA 71952 Mm.251483 NM_023633 ENSMUSG00000046791 Riox1 2410016O06Rik|MAPJD|NO66 - 12|12 D1 ribosomal oxygenase 1 protein-coding 319433 Mm.483827 NM_001199945 ENSMUSG00000091155 Serpine3 E130113E03Rik - 14|14 D1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3 protein-coding 105245203 XR_871817 Gm40689 - - 10 B5.3|10 predicted gene, 40689 ncRNA 102636600 Mm.227606 NR_152786 ENSMUSG00000111005 Gm33619 - - 10 A3|10 predicted gene, 33619 ncRNA 20499 Mm.275800 NM_011390 ENSMUSG00000017756 Slc12a7 AA408796|D13Ertd261e|Kcc4 - 13 C1|13 40.15 cM solute carrier family 12, member 7 protein-coding 66058 Mm.27061 NM_025326 ENSMUSG00000023367 Tmem176a 0610011I04Rik|AU040201|AU041743|Keg2 - 6|6 B2.3 transmembrane protein 176A protein-coding 105242502 LOC105242502 - - - prostatic spermine-binding protein protein-coding 18736 Mm.355440 NM_008849 ENSMUSG00000004842 Pou1f1 GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf - 16 C1.3|16 37.25 cM POU domain, class 1, transcription factor 1 protein-coding 26444 Mm.21728 NM_011969 ENSMUSG00000027566 Psma7 C6-I - 2|2 H4 proteasome (prosome, macropain) subunit, alpha type 7 protein-coding 238331 Mm.185890 NM_001080943 ENSMUSG00000048483 Zdhhc22 Gm262 - 12|12 D2 zinc finger, DHHC-type containing 22 protein-coding 102465198 NR_105798 ENSMUSG00000099169 Mir7j Gm27716|Mirlet7j|mmu-let-7j - 3|3 H1 microRNA 7j ncRNA 72016 Mm.23881 NM_028056 ENSMUSG00000024118 Tedc2 1600002H07Rik - 17|17 A3.3 tubulin epsilon and delta complex 2 protein-coding 102636942 XR_382516 Gm33875 - - 13 B1|13 predicted gene, 33875 ncRNA 105948584 Pax6drr SIMO - - Pax6 downstream regulatory region biological-region 236920 Mm.236928 NM_199018 ENSMUSG00000031216 Stard8 Dlc3|mKIAA0189 - X|X C3 START domain containing 8 protein-coding 100418481 Gm19239 - - 13|13 C3 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene pseudo 435651 Gm5705 EG435651|Gm206 - 1|1 H2.1 eukaryotic translation initiation factor 4E family member 1B pseudogene pseudo 623697 Gm6446 EG623697 - X|X F2 predicted gene 6446 pseudo 100217422 NR_028522 ENSMUSG00000088252 Snord13 MBII-136 - 8 A3|8 small nucleolar RNA, C/D box 13 snoRNA 20104 Mm.379007 NM_009096 ENSMUSG00000028495 Rps6 S6R - 4|4 C4 ribosomal protein S6 protein-coding 100415912 Mm.446786 NR_130177 Gm11665 Gm11664 - 11 E1|11 predicted gene 11665 ncRNA 214230 Mm.241857 NM_001033254 ENSMUSG00000074923 Pak6 4732456M09 - 2|2 E5 p21 (RAC1) activated kinase 6 protein-coding 228139 Mm.440375 NM_145526 ENSMUSG00000027071 P2rx3 4930513E20Rik|P2X3 - 2|2 D purinergic receptor P2X, ligand-gated ion channel, 3 protein-coding 791089 Ighv2-9-1 Gm16595 - 12|12 F1 immunoglobulin heavy variable 2-9-1 other 239167 Mm.259889 NM_173420 ENSMUSG00000047977 Synb D930020E02Rik|syncytin-B - 14|14 D2 syncytin b protein-coding 102637181 XR_001785452 Gm38496 - - 6 B1|6 predicted gene, 38496 ncRNA 269831 Mm.21950 NM_173007 ENSMUSG00000029669 Tspan12 9030619E17|AI426782|AI663988|AW111457|Tm4sf12 - 6|6 A3.1 tetraspanin 12 protein-coding 217430 Mm.379451 NM_172574 ENSMUSG00000045679 Pqlc3 C78076|E030024M05Rik - 12|12 A1.1 PQ loop repeat containing protein-coding 258621 Mm.377598 NM_146628 ENSMUSG00000096822 Olfr344 MOR136-12 - 2|2 B olfactory receptor 344 protein-coding 620659 Gm6170 EG620659 - 1|1 E3 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 380918 Mm.484360 NM_001128093 ENSMUSG00000091722 Siah3 Gm912 - 14|14 D3 siah E3 ubiquitin protein ligase family member 3 protein-coding 73087 2900084I15Rik - - 6|6 RIKEN cDNA 2900084I15 gene protein-coding 211651 Mm.160061 NM_001033244 ENSMUSG00000034023 Fancd2 2410150O07Rik|AU015151|BB137857|FA-D2|FA4|FACD|FAD|FANCD - 6|6 E3 Fanconi anemia, complementation group D2 protein-coding 73677 Mm.87277 NM_001163609 ENSMUSG00000036743 Psma8 2410072D24Rik - 18|18 A1 proteasome (prosome, macropain) subunit, alpha type, 8 protein-coding 109529 Lrdm2 - - - lymphoproliferation (Fas) renal disease modifier 2 unknown 21762 Mm.243234 NM_134101 ENSMUSG00000006998 Psmd2 9430095H01Rik|AA407121|TEG-190|Tex190 - 16|16 B1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 protein-coding 170833 Mm.247775 NM_133255 ENSMUSG00000052566 Hook2 A630054I03Rik - 8|8 C3 hook microtubule tethering protein 2 protein-coding 102638769 XR_389511 Gm26808 - - 5 F|5 predicted gene, 26808 ncRNA 102635995 Gm33191 - - Y|Y predicted gene, 33191 pseudo 360111 D17Jcs112 - - - DNA segment, Chr 17, John C. Schimenti 112 unknown 61922 D4Mit309 - - 4 63.43 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 309 unknown 625237 Mm.390529 NR_136901 ENSMUSG00000113918 Gm6566 EG625237 - 12|12 D2 predicted gene 6566 ncRNA 387170 NR_029562 ENSMUSG00000065515 Mir152 Mirn152|mir-152|mmu-mir-152 - 11|11 D microRNA 152 ncRNA 331401 Mm.259498 NM_001033422 ENSMUSG00000037475 Thoc2 6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2 - X|X A4 THO complex 2 protein-coding 320848 Mm.446032 6030446J10Rik - - 18|18 RIKEN cDNA 6030446J10 gene protein-coding 102639735 XR_379176 Gm35977 - - 9 A3|9 predicted gene, 35977 ncRNA 404460 Olfr1041-ps1 EG257843|GA_x5J8B7W3KVV-170014-170572|Gm5028 - 2|2 D olfactory receptor 1041, pseudogene 1 pseudo 433868 Mm.450696 NM_001256263 ENSMUSG00000086815 3110082J24Rik - - 5 B1|5 RIKEN cDNA 3110082J24 gene protein-coding 71076 4933422E07Rik - - 12|12 RIKEN cDNA 4933422E07 gene protein-coding 237387 Mm.133301 NM_145152 ENSMUSG00000051652 Lrrc3 1300011L04Rik|C21orf102 - 10|10 C1 leucine rich repeat containing 3 protein-coding 105243332 XR_879363 Gm39285 - - 8 E2|8 predicted gene, 39285 ncRNA 60963 D3Mit328 - - 3 5.44 cM DNA Segment, Chr 3 Massachusetts Institute of Technology 328 unknown 545572 Gm5857 EG545572 - 3|3 H2 predicted gene 5857 pseudo 61447 D6Mit126 - - 6 32.43 cM DNA segment, Chr 6, Massachusetts Institute of Technology 126 unknown 235472 Mm.31696 NM_175485 ENSMUSG00000036030 Prtg A230098A12Rik|Igdcc5 - 9|9 D protogenin protein-coding 109279876 LOC109279876 Mm86 - - VISTA enhancer mm86 biological-region 102640376 XM_017316339 Gm36448 - - 14 C2|14 predicted gene, 36448 protein-coding 102636306 Gm33411 - - 2|2 predicted gene, 33411 ncRNA 21018 T(1;6)42Ad T42Ad - - reciprocal translocation, Chr 1 and 6, Adler 42 other 546401 Gm15204 EG546401 - X|X F4 thyroid hormone receptor associated protein 3 pseudogene pseudo 108083 Mm.39700 NM_054051 ENSMUSG00000018547 Pip4k2b AI848124|PI5P4Kbeta|Pip5k2b|c11 - 11 D|11 61.07 cM phosphatidylinositol-5-phosphate 4-kinase, type II, beta protein-coding 102635169 XR_380531 4930543I11Rik - - 10|10 B5.1 RIKEN cDNA 4930543I11 gene ncRNA 669853 Gm10517 - - 1 H5|1 predicted gene 10517 protein-coding 60895 D8Mit45 - - 8 42.16 cM DNA segment, Chr 8, Massachusetts Institute of Technology 45 unknown 669780 XM_006502494 Gm16527 - - 3|3 D predicted gene, 16527 protein-coding 328330 Mm.108587 XM_006517803 D130037M23Rik - - 13|13 D1 RIKEN cDNA D130037M23 gene protein-coding 105245047 XM_011244236 Gm40556 - - 12 E|12 predicted gene, 40556 protein-coding 61298 D3Mit101 - - 3 41.93 cM DNA segment, Chr 3, Massachusetts Institute of Technology 101 unknown 320183 Mm.169755 NM_177092 ENSMUSG00000051236 Msrb3 D430026P16Rik|I-8-23|MsrB2 - 10|10 D2 methionine sulfoxide reductase B3 protein-coding 50496 Mm.23296 NM_033270 ENSMUSG00000057469 E2f6 AI462434|E2F6a|E2F6b|EMA - 12 A1.1|12 8.04 cM E2F transcription factor 6 protein-coding 107810 Pscs - - - corneal susceptibility to P. aeruginosa protein-coding 319520 Mm.170276 NM_176933 ENSMUSG00000031530 Dusp4 2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2 - 8|8 A4 dual specificity phosphatase 4 protein-coding 360088 D17Jcs42 - - - DNA segment, Chr 17, John C. Schimenti 42 unknown 70872 4921519G19Rik - - 10|10 RIKEN cDNA 4921519G19 gene protein-coding 78520 Mm.405801 NR_045717 ENSMUSG00000099590 C330022C24Rik - - 7|7 F4 RIKEN cDNA C330022C24 gene ncRNA 100040095 Gm11858 - - 4|4 A2 predicted gene 11858 pseudo 99889 Mm.316536 NM_001081093 ENSMUSG00000074513 Arfip1 2310030I10Rik|Arfaptin|D3Ertd598e - 3|3 F1 ADP-ribosylation factor interacting protein 1 protein-coding 23832 Mm.390241 NM_011798 ENSMUSG00000060509 Xcr1 Ccxcr1|Gpr5|mXcr1 - 9 F4|9 74.71 cM chemokine (C motif) receptor 1 protein-coding 21128 T(2;3)24H T24H - - reciprocal translocation, Chr 2 and 3, Harwell 24 other 62430 D11Mit305 - - 11 10.15 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 305 unknown 105392 Mm.442105 AW742350 - - - expressed sequence AW742350 protein-coding 61984 D9Mit301 - - 9 30.43 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 301 unknown 78625 Mm.160106 NM_030141 ENSMUSG00000024209 1700061G19Rik 1700026H02|AI507598 - 17|17 D RIKEN cDNA 1700061G19 gene protein-coding 114713 Mm.124502 NM_053268 ENSMUSG00000032413 Rasa2 5430433H21Rik|AA517451|AU023900|GAP1m - 9|9 E3.3 RAS p21 protein activator 2 protein-coding 58807 Mm.284495 NM_021471 ENSMUSG00000030235 Slco1c1 OATP-14|OATP-F|Oatp2|Oatpf|Slc21a14 - 6|6 G2 solute carrier organic anion transporter family, member 1c1 protein-coding 406222 Mm.359153 NM_001003669 ENSMUSG00000067596 Krt74 K74|Kb37 - 15|15 F2 keratin 74 pseudo 102639246 XR_373715 Gm35601 - - 1 H3|1 predicted gene, 35601 ncRNA 17755 Mm.4173 NM_008634 ENSMUSG00000052727 Map1b A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5 - 13 D1|13 52.9 cM microtubule-associated protein 1B protein-coding 97852 C76938 - - - expressed sequence C76938 unknown 114237 Eae16 - - 12 8.49 cM experimental allergic encephalomyelitis susceptibility 16 unknown 258165 Mm.376125 NM_001011859 ENSMUSG00000095839 Olfr965 MOR171-28 - 9|9 A5.1 olfactory receptor 965 protein-coding 61908 D2Mit451 - - 2 77.26 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 451 unknown 73167 Mm.128411 NM_028455 ENSMUSG00000078954 Arhgap8 3110043J09Rik - 15|15 E2 Rho GTPase activating protein 8 protein-coding 100416363 Gm18071 - - 14|14 A1 predicted gene, 18071 pseudo 492825 Ath13 - - 14 26.46 cM atherosclerosis 13 unknown 359847 DXMgc77 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 77 unknown 258618 Mm.377596 NM_146625 ENSMUSG00000075380 Olfr355 MOR138-2 - 2|2 B olfactory receptor 355 protein-coding 100504000 Gm20006 - - 10 C1|10 43.7 cM 60S ribosomal protein L23-like pseudo 116707 Uvbi1 - - 10 24.71 cM UVB induced immunosuppression 1 unknown 108167965 Gm46322 - - 12 F2|12 predicted gene, 46322 pseudo 100038687 Gm10577 - - - predicted gene 10577 protein-coding 14695 Mm.68889 NM_013530 ENSMUSG00000023439 Gnb3 Gnb-3 - 6 F2|6 59.17 cM guanine nucleotide binding protein (G protein), beta 3 protein-coding 116770 Cocia3 - - - cocaine induced activation 3 unknown 52349 D7Ertd526e - - 7 30.42 cM DNA segment, Chr 7, ERATO Doi 526, expressed unknown 102633152 Mm.404620 XR_379697 Gm28703 - - 9 E3.1|9 predicted gene 28703 ncRNA 69350 Mm.440425 NR_029433 ENSMUSG00000087621 1700003G18Rik 2610312K03Rik - 7|7 F1 RIKEN cDNA 1700003G18 gene ncRNA 327942 Mm.390358 NM_199026 ENSMUSG00000014245 Pigl Gm737 - 11|11 B2 phosphatidylinositol glycan anchor biosynthesis, class L protein-coding 116731 Mm.308500 NM_054072 ENSMUSG00000103442 Pcdha1 CNR - 18|18 B2-B3 protocadherin alpha 1 protein-coding 61482 D7Mit149 - - 7 54.06 cM DNA segment, Chr 7, Massachusetts Institute of Technology 149 unknown 108215 Hspa-ps 70kDa|Hsp70-ps1 - - heat shock protein, pseudogene 1 pseudo 100217433 NR_028533 ENSMUSG00000095472 Snord88a MBII-211 - 7 B3|7 small nucleolar RNA, C/D box 88A snoRNA 11568 Mm.3317 NM_009636 ENSMUSG00000020473 Aebp1 ACLP - 11|11 A1 AE binding protein 1 protein-coding 387240 Mir199c Mirn199c - - microRNA 199c ncRNA 105243320 Gm39276 - - 8|8 predicted gene, 39276 ncRNA 338350 Mm.482918 NM_178799 ENSMUSG00000042647 Acad12 9330129D05Rik - 5|5 F acyl-Coenzyme A dehydrogenase family, member 12 protein-coding 108640 Copg2os1 Copg2as|Copg2as1 - - coatomer protein complex, subunit gamma 2, opposite strand 1 ncRNA 56632 Mm.24222 NM_020011 ENSMUSG00000057342 Sphk2 C76851 - 7|7 B3 sphingosine kinase 2 protein-coding 102641600 LOC102641600 - - - cytochrome c oxidase subunit 5B, mitochondrial protein-coding 216963 Mm.290182 NM_001004144 ENSMUSG00000011877 Git1 Cat-1|p95Cat - 11|11 B5 G protein-coupled receptor kinase-interactor 1 protein-coding 68202 Mm.275780 NM_026614 ENSMUSG00000023089 Ndufa5 2900002J19Rik|CI-13kD-B - 6|6 A3.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 protein-coding 105242765 XR_869421 Gm38894 - - 6 F2|6 predicted gene, 38894 ncRNA 100038576 F830112A20Rik - - - RIKEN cDNA F830112A20 gene protein-coding 171271 Mm.377223 NM_134237 ENSMUSG00000096099 Vmn1r220 V1rh12 - 13|13 A3.1 vomeronasal 1 receptor 220 protein-coding 78687 Mm.160113 XR_376450 0610025J13Rik B430316H17Rik - 4|4 C6 RIKEN cDNA 0610025J13 gene unknown 723842 NR_029762 ENSMUSG00000065577 Mir329 Mirn329|mir-329|mmu-mir-329 - 12 F1|12 microRNA 329 ncRNA 76826 Mm.244781 NM_029760 ENSMUSG00000035142 Nubpl 2410170E07Rik - 12|12 C1 nucleotide binding protein-like protein-coding 76173 Mm.383938 6330531I01Rik - - 14|14 D3 RIKEN cDNA 6330531I01 gene protein-coding 668262 Gm9072 EG668262 - 12|12 A1.1 Crn, crooked neck-like 1 pseudogene pseudo 108280 Psme1-ps1 Psme1-like - - protease (prosome, macropain) 28 subunit, alpha, pseudogene 1 pseudo 78635 Mm.381306 NR_040759 ENSMUSG00000074346 Kcnd3os 1700095B22Rik - 3|3 F2.2 potassium voltage-gated channel, Shal-related family, member 3, opposite strand ncRNA 100504452 Mm.447975 Gm20235 - - 12|12 32.0 cM predicted gene, 20235 unknown 751551 NR_030448 ENSMUSG00000076117 Mir680-2 Mirn680-2 - X F2|X microRNA 680-2 ncRNA 102637839 XM_011243957 Gm10476 - - 12 A1.3|12 8.42 cM predicted gene 10476 protein-coding 107966120 Sox10-mcs4 MCS4|U3 - - Sox10 multiple-species conserved sequence 4 biological-region 67084 Mm.33709 NM_025957 ENSMUSG00000023185 Ceacam14 1600021E03Rik|1600025E09Rik|AV033953 - 7|7 A2 carcinoembryonic antigen-related cell adhesion molecule 14 protein-coding 108168566 XM_017318769 LOC108168566 - - Y E Y-linked testis-specific protein 1-like protein-coding 100035677 Lbn9 LBN10.1 - 10 41.33 cM long bones 9 unknown 241624 Mm.212773 NM_172857 ENSMUSG00000048647 Exd1 4932702D22Rik|Exdl1|mExd1 - 2|2 E5 exonuclease 3'-5' domain containing 1 protein-coding 73395 Mm.69413 NR_040525 ENSMUSG00000101553 1700049E22Rik - - 6|6 D3 RIKEN cDNA 1700049E22 gene ncRNA 18802 Mm.290731 NM_148937 ENSMUSG00000026173 Plcd4 4921507K24Rik - 1 C3|1 38.54 cM phospholipase C, delta 4 protein-coding 97435 T25670 - - - expressed sequence T25670 unknown 105242790 Mm.216309 XR_001780099 9130204K15Rik - - 11|11 B5 RIKEN cDNA 9130204K15 gene ncRNA 259125 Mm.377862 NM_147121 ENSMUSG00000110012 Olfr644 MOR13-1 - 7|7 E3 olfactory receptor 644 protein-coding 626115 Mm.440775 NM_001039230 Gm6653 EG626115 - 10 C1|10 predicted gene 6653 unknown 404248 Mrgpra15 MrgA15 - - MAS-related GPR, member A15 protein-coding 77272 9430027B09Rik - - 5|5 C3.1 RIKEN cDNA 9430027B09 gene protein-coding 111343 Il1 Il-1 - - interleukin 1 complex other 102467422 n-TNgtt7 n-Tn7 - 10 C1|10 nuclear encoded tRNA asparagine 7 (anticodon GTT) tRNA 12869 Mm.3841 NM_007751 ENSMUSG00000025488 Cox8b Cox8h|CoxVIII-H - 7 F5|7 86.11 cM cytochrome c oxidase subunit VIIIb protein-coding 100043316 Gm4354 - - X E1|X predicted gene 4354 unknown 21139 T(2;4)32Ad T32Ad - - reciprocal translocation, Chr 2 and 4, Adler 32 other 100417146 Gm18421 - - 6|6 A1 sulfatase modifying factor 2 pseudogene pseudo 72772 Mm.133300 NM_177323 ENSMUSG00000028999 Rint1 1500019C06Rik|2810450M21Rik|Rint-1 - 5|5 A3 RAD50 interactor 1 protein-coding 777667 Ighd2-7 Gm16942 - 12|12 F1 immunoglobulin heavy diversity 2-7 other 102634332 XR_375780 Gm31940 - - 3 F1|3 predicted gene, 31940 ncRNA 68385 Mm.390375 NM_026708 ENSMUSG00000019437 Tlcd1 - - 11|11 B5 TLC domain containing 1 protein-coding 100126588 Trav9-3 - - 14|14 C2 T cell receptor alpha variable 9-3 other 102638195 Mm.406724 XR_387251 2700003A03Rik - - 1|1 D RIKEN cDNA 2700003A03 gene ncRNA 105242808 XR_869559 Gm38917 - - 6 G2|6 predicted gene, 38917 ncRNA 102466760 NR_105864 ENSMUSG00000098487 Mir6899 Gm27384|mmu-mir-6899 - 1|1 C2 microRNA 6899 ncRNA 639964 Gm7283 - - 17 E3|17 mps one binder kinase activator-like 2B pseudogene pseudo 105246366 XR_877177 Mir133a-1hg Gm21747 - 18 A1|18 Mir133a-1, Mir1b and Mir1a-2 host gene ncRNA 545589 Gm12919 - - 4|4 A1 karyopherin (importin) alpha 2 pseudogene pseudo 100534310 Gm21929 - - X|X F3 predicted gene, 21929 pseudo 66870 Mm.240490 NM_025814 ENSMUSG00000036371 Serbp1 1200009K13Rik|9330147J08Rik|AL022786|Pairbp1 - 6|6 C1 serpine1 mRNA binding protein 1 protein-coding 103597 AA591041 - - - expressed sequence AA591041 unknown 100416371 Gm18077 - - 14|14 A1 ribosomal protein S7 pseudogene pseudo 70896 Mm.425218 NM_001309520 ENSMUSG00000095829 Speer1 4921519H07Rik|SPEER-1|Speer1-ps1 - 5|5 A1 spermatogenesis associated glutamate (E)-rich protein 1 protein-coding 30044 Mm.272060 NM_013887 ENSMUSG00000021799 Opn4 1110007J02Rik|Gm533 - 14|14 B opsin 4 (melanopsin) protein-coding 666205 Gm7979 EG666205 - 13|13 B3 farnesyl diphosphate synthetase pseudogene pseudo 14550 Mm.453135 Gdap5 - - - ganglioside-induced differentiation-associated-protein 5 protein-coding 665296 Gm7575 EG665296 - 18|18 A1 PHD finger protein 14 pseudogene pseudo 212892 Mm.131949 NM_001162957 ENSMUSG00000039552 Rsph4a A230081C05|Rshl3 - 10|10 B1 radial spoke head 4 homolog A (Chlamydomonas) protein-coding 111358 Rsp7 Rsp-7 - - repeat sequence probe 7 other 192231 Mm.8763 NM_138753 ENSMUSG00000048878 Hexim1 7330426E13Rik|CLP-1|Clp1|HIS1 - 11|11 E1 hexamethylene bis-acetamide inducible 1 protein-coding 108168279 Gm46546 - - 16 C3.3|16 40S ribosomal protein S21 pseudogene pseudo 408066 Mm.246812 XR_382927 ENSMUSG00000021763 BC067074 - - 13|13 D2.2 cDNA sequence BC067074 unknown 71354 Mm.155573 NM_023597 ENSMUSG00000028391 Wdr31 5430402I10Rik|spWD - 4|4 B3 WD repeat domain 31 protein-coding 14071 Mm.391283 NM_007979 ENSMUSG00000031138 F9 AW111646|Cf-9|Cf9 - X A6|X 33.5 cM coagulation factor IX protein-coding 21952 Mm.44379 NM_021467 ENSMUSG00000026418 Tnni1 2700018B22Rik|AI747285|ssTnI - 1 E4|1 59.28 cM troponin I, skeletal, slow 1 protein-coding 667636 Gm8741 EG667636 - 17 B1|17 Nhp2 non-histone chromosome protein 2-like 1 pseudogene pseudo 109797 Ea6 Ea-6|H-6 - - erythrocyte antigen 6 protein-coding 105243740 XR_878294 Gm39548 - - X F4|X predicted gene, 39548 ncRNA 100417263 Gm18489 - - 9|9 F3 crumbs homolog 1 pseudogene pseudo 170804 Cdcs3 - - 2 59.34 cM cytokine deficiency colitis susceptibility 3 unknown 102638047 XM_006535886 ENSMUSG00000079808 LOC102638047 - - - sp110 nuclear body protein-like protein-coding 223227 Mm.70950 NM_177753 ENSMUSG00000061517 Sox21 Sox25 - 14|14 E4 SRY (sex determining region Y)-box 21 protein-coding 100416899 Gm18309 - - 7|7 D1 YEATS domain containing 4 pseudogene pseudo 667035 XR_869418 Gm8430 EG667035 - 6|6 F1 predicted pseudogene 8430 pseudo 102640046 XR_882211 Gm36212 - - 7 C|7 predicted gene, 36212 ncRNA 667413 Gm8617 EG667413 - X|X A7.3 predicted gene 8617 pseudo 110120516 LOC110120516 - - - VISTA enhancer mm1462 biological-region 19635 Rb(9.16)9Rma Rb9Rma - - Robertsonian translocation, Chr 9 and 16, Universita di Roma 9 other 67046 Mm.269213 NM_025935 ENSMUSG00000021368 Tbc1d7 2610009C09Rik - 13|13 A4 TBC1 domain family, member 7 protein-coding 230639 Mm.466610 NM_001100183 ENSMUSG00000083138 Cyp4a29 Cyp4a29-ps - 4|4 D1 cytochrome P450, family 4, subfamily a, polypeptide 29 protein-coding 100312564 Vmn1r-ps136 - - 14 D1|14 vomeronasal 1 receptor, pseudogene 136 pseudo 623483 Gm13196 Rpl22p - 2|2 A1 ribosomal protein L22 pseudogene pseudo 108168398 XR_001782535 Gm46638 - - 18 E3|18 predicted gene, 46638 ncRNA 214854 Mm.389110 NM_153408 ENSMUSG00000047180 Neurl3 2010300P06Rik|Lincr - 1|1 B neuralized E3 ubiquitin protein ligase 3 protein-coding 100093666 Trnay-aua - - - transfer RNA tyrosine (anticodon AUA) tRNA 12477 Mm.390 NM_009843 ENSMUSG00000026011 Ctla4 Cd152|Ctla-4|Ly-56 - 1 C2|1 30.58 cM cytotoxic T-lymphocyte-associated protein 4 protein-coding 666744 Mm.387002 NM_001162954 ENSMUSG00000091923 Gm8267 EG666744 - 14 C1|14 predicted gene 8267 protein-coding 69727 Mm.48795 NM_177561 ENSMUSG00000054814 Usp46 1190009E20Rik|2410018I08Rik|AI451644 - 5|5 C3.3 ubiquitin specific peptidase 46 protein-coding 13837 Mm.1977 NM_010140 ENSMUSG00000052504 Epha3 AW492086|Cek4|EK4|ETK1|End3|Hek|Hek4|Mek4|Tyro4 - 16|16 C1.3 Eph receptor A3 protein-coding 229644 Mm.189351 NM_194343 ENSMUSG00000033233 Trim45 4921530N01Rik - 3|3 F2.2 tripartite motif-containing 45 protein-coding 98471 Mm.443670 AI853363 - - - expressed sequence AI853363 protein-coding 319535 Mm.170163 NM_001013387 ENSMUSG00000054737 Zfp182 6330583I20Rik|Znf182 - X|X A1.3 zinc finger protein 182 protein-coding 61069 D2Mit362 - - 2 13.09 cM DNA segment, Chr 2, Massachusetts Institute of Technology 362 unknown 19073 Mm.338790 NM_011157 ENSMUSG00000020077 Srgn Prg|Prg1|Sgc - 10|10 B4 serglycin protein-coding 100417370 Gm18569 Gm18566 - 14|14 A1 ubiquitin specific peptidase 7 pseudogene pseudo 100416072 Gm17903 - - 1|1 A1 F-box protein 5 pseudogene pseudo 100035071 W6q17 - - - weight 6 weeks QTL 17 unknown 110488 Tcra-V4.3 - - - T cell receptor alpha, variable 4.3 other 791409 Mm.211089 Gm9883 - - 19 C1|19 predicted gene 9883 unknown 387155 NR_029551 ENSMUSG00000065569 Mir137 Mirn137|mir-137|mmu-mir-137 - 3|3 G1 microRNA 137 ncRNA 61832 D2Mit318 - - 2 18.29 cM DNA segment, Chr 2, Massachusetts Institute of Technology 318 unknown 93889 Mm.196852 NM_053143 ENSMUSG00000048347 Pcdhb18 Pcdhb9|PcdhbR - 18|18 B3 protocadherin beta 18 protein-coding 100126795 Mm.386851 NR_152219 ENSMUSG00000073787 Gm10575 - - 7|7 F5 predicted gene 10575 ncRNA 100038639 Gm10739 - - - predicted gene 10739 protein-coding 105243048 XR_869923 Gm39082 - - 7 F2|7 predicted gene, 39082 ncRNA 433746 Mm.388908 NR_033617 ENSMUSG00000055198 Gm12830 - - 4 D1|4 predicted gene 12830 ncRNA 105246487 XR_877541 Gm41772 - - 18 E2|18 predicted gene, 41772 ncRNA 21082 T(14E4or5;16B5)225Dn T(14;16)225Dn|T225Dn - - reciprocal translocation, Chr 14, cytogenetic band E4or5; and Chr 16, cytogenetic band B5, Davisson 225 other 14155 Mm.24069 NM_010193 ENSMUSG00000032244 Fem1b mKIAA0396 - 9 B|9 33.87 cM feminization 1 homolog b (C. elegans) protein-coding 27792 D14Abb2e - - 14 22.27 cM DNA segment, Chr 14, Abbott 2 expressed unknown 75781 Mm.410826 4930422C21Rik - - 8|8 RIKEN cDNA 4930422C21 gene protein-coding 102466969 NR_105768 ENSMUSG00000098876 Mir6350 Gm27958|mmu-mir-6350 - 1|1 C1.1 microRNA 6350 ncRNA 100042265 NM_001112668 Gm9790 - - 3|3 F1 predicted gene 9790 pseudo 104118 H37 H-37 - - histocompatibility 37 protein-coding 71414 Mm.399773 5430427G11Rik - - 10|10 RIKEN cDNA 5430427G11 gene protein-coding 13184 Mm.371556 NM_019910 ENSMUSG00000096445 Dcpp1 BC005655|C86550|Dcpp|Dcpp-1|p20 - 17 A3.3|17 12.11 cM demilune cell and parotid protein 1 protein-coding 100418204 Gm19072 - - 1|1 C4 proteasome (prosome, macropain) subunit, alpha type 2 pseudogene pseudo 14030 Mm.142822 NM_007968 ENSMUSG00000009079 Ewsr1 Ews|Ewsh - 11|11 A1 Ewing sarcoma breakpoint region 1 protein-coding 67893 Mm.27338 NM_026436 ENSMUSG00000010307 Tmem86a 1810054O13Rik|AI414959|AW742698 - 7|7 B3 transmembrane protein 86A protein-coding 111310 Hmgn1-rs15 Hmg14-rs15 - - high mobility group nucleosomal binding domain 1, related sequence 15 pseudo 111928 Iap3rb14 - - - intracisternal A-type particle, U3 region, SINE repeat b-14 other 102632218 Gm30355 - - Y|Y tRNA methyltransferase 112 homolog pseudo 22392 wfd - - - wide-faced unknown 109279924 LOC109279924 Mm187 - - VISTA enhancer mm187 biological-region 666340 Gm8054 EG666340 - 8|8 C1 Rpl21 pseudogene pseudo 73334 Mm.396214 1700040F17Rik - - 15|15 D1 RIKEN cDNA 1700040F17 gene unknown 668662 Mm.425733 XR_001780519 Gm9292 EG668662 - 12|12 A1.3 predicted gene 9292 unknown 13297 Del(17)T<7J>1J Del(17)T<7J>|Del1J|T<7J> - - deletion, Chr 17, T<7J>, 1 Jackson other 26922 Mm.192706 NM_025297 ENSMUSG00000028910 Mecr AI195831|NRBF-1|Nrbf1 - 4|4 D2.3 mitochondrial trans-2-enoyl-CoA reductase protein-coding 19240 Mm.3532 NM_025284 ENSMUSG00000079523 Tmsb10 Ptmb10|Tb10 - 6|6 C1 thymosin, beta 10 protein-coding 105242466 LOC105242466 - - - alpha-defensin 16 protein-coding 70453 2610105M22Rik - - 9|9 RIKEN cDNA 2610105M22 gene protein-coding 73399 Mm.416861 NR_036606 ENSMUSG00000078957 1700060C20Rik - - 2|2 H1 RIKEN cDNA 1700060C20 gene ncRNA 61702 D5Mit334 - - 5 17.33 cM DNA segment, Chr 5, Massachusetts Institute of Technology 334 unknown 100035804 Brmth3 - - 5 50.64 cM behavioral response to methamphetamines 3 unknown 102633530 Mm.399306 XR_001780737 Gm31336 - - 12 F2|12 predicted gene, 31336 ncRNA 276715 469O12.R - - - DNA segment, 469O12.R unknown 102467631 n-TEctc10 n-Te10 - 11 B1.3|11 nuclear encoded tRNA glutamic acid 10 (anticodon CTC) tRNA 13243 Mm.436573 Defa9 Defa32|Defcr9 - 8|8 defensin, alpha, 9 protein-coding 100035577 Ducm1 dsRNA1 - 7 31.19 cM dsRNA-induced UCM 1 unknown 100038698 Mm.336277 Gm10437 - - - predicted gene 10437 unknown 75659 Mm.130665 NM_023790 ENSMUSG00000030032 Wdr54 1700030E05Rik - 6|6 C3 WD repeat domain 54 protein-coding 258881 Mm.377733 NM_146881 ENSMUSG00000049456 Olfr1404 MOR267-2 - 1|1 H3 olfactory receptor 1404 protein-coding 404244 Mrgpra11 MrgA11 - - MAS-related GPR, member A11 protein-coding 110257 Mm.196110 NM_001083955 ENSMUSG00000069917 Hba-a2 - - 11 A4|11 18.87 cM hemoglobin alpha, adult chain 2 protein-coding 110673975 LOC110673975 - - - Cyp2a5 5' regulatory region biological-region 404585 AL117938 - - - expressed sequence AL117938 unknown 108167350 XR_001779116 Gm45955 - - 9 A4|9 predicted gene, 45955 ncRNA 80707 Mm.440420 NM_019573 ENSMUSG00000004637 Wwox 5330426P09Rik|9030416C10Rik|WOX1 - 8|8 E1 WW domain-containing oxidoreductase protein-coding 626878 Gm6714 EG626878 - 10|10 C1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 pseudogene pseudo 30940 Mm.40986 NM_013918 ENSMUSG00000022867 Usp25 - - 16|16 C3.1 ubiquitin specific peptidase 25 protein-coding 100035929 Sdtq9 E10.2 - - skull development traits QTL 9 unknown 21446 tclTuw28 tcl-Tuw28 - - t-complex lethal Tuw28 unknown 246104 Mm.194148 NM_139228 ENSMUSG00000017692 Rhbdl3 AI847581|Rhbdl4|Rhomr1|Vrho - 11|11 B5 rhomboid like 3 protein-coding 105653 Mm.192598 NM_145981 ENSMUSG00000003469 Phyhip AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1 - 14|14 D2 phytanoyl-CoA hydroxylase interacting protein protein-coding 105243132 XR_870166 Gm39136 - - 8 A1.3|8 predicted gene, 39136 ncRNA 102640985 XR_375741 LOC102640985 - - 3 E3 uncharacterized LOC102640985 ncRNA 102465593 NR_105948 ENSMUSG00000098475 Mir6982 Gm27890|mmu-mir-6982 - 18|18 E1 microRNA 6982 ncRNA 74479 Mm.270781 NM_028965 ENSMUSG00000020876 Snx11 4933439F10Rik|A930041K09Rik|AI117694 - 11|11 D sorting nexin 11 protein-coding 108168070 XR_001780875 LOC108168070 - - 13 A3.1 uncharacterized LOC108168070 ncRNA 100417600 Gm18707 - - 7|7 F3 deleted in malignant brain tumors 1 pseudogene pseudo 76808 Mm.379251 NM_029751 ENSMUSG00000045128 Rpl18a 2510019J09Rik - 8|8 B3.3 ribosomal protein L18A protein-coding 171033 Chab3 - - - cholesterol absorption 3 unknown 13221 NM_007846 Defa-rs12 CRS4C-5|Defcr-rs12 - 8|8 A2 defensin, alpha, related sequence 12 protein-coding 235604 Mm.274540 NM_145621 ENSMUSG00000032936 Camkv 1G5|BB074618|BC017634 - 9|9 F1 CaM kinase-like vesicle-associated protein-coding 20287 Mm.4723 NM_011328 ENSMUSG00000038580 Sct - - 7|7 F5 secretin protein-coding 77422 Mm.256874 NM_029909 ENSMUSG00000024592 C330018D20Rik AU018666 - 18|18 D3 RIKEN cDNA C330018D20 gene protein-coding 108168611 XM_017318818 LOC108168611 - - Y D Y-linked testis-specific protein 1-like protein-coding 61534 D8Mit200 - - 8 61.37 cM DNA segment, Chr 8, Massachusetts Institute of Technology 200 unknown 70538 Mm.399807 NR_045341 ENSMUSG00000091370 5730435O14Rik - - 10|10 B2 RIKEN cDNA 5730435O14 gene ncRNA 73461 Mm.398232 1700061H18Rik - - 18|18 RIKEN cDNA 1700061H18 gene protein-coding 108168969 XR_001784379 Gm46864 - - 4 C6|4 predicted gene, 46864 ncRNA 102633646 XR_376972 Gm31423 - - 5 C3.1|5 predicted gene, 31423 ncRNA 545429 Gm13680 - - 2|2 D ribosomal protein S4, X-linked pseudogene pseudo 80885 Mm.440567 NM_030701 ENSMUSG00000045502 Hcar2 Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b - 5|5 F hydroxycarboxylic acid receptor 2 protein-coding 100417996 Gm14947 - - X|X E3 family with sequence similarity 133, member B pseudogene pseudo 61585 DXMit128 - - X 41.04 cM DNA segment, Chr X, Massachusetts Institute of Technology 128 unknown 15492 Mm.140811 NM_008293 ENSMUSG00000027871 Hsd3b1 3-beta-HSD I|D3Ertd383e - 3 F2.2|3 42.89 cM hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein-coding 668522 Ighv1-46 - - 12|12 F2 immunoglobulin heavy variable V1-46 pseudo 100049603 Vms1 - - - viral myocarditis susceptibility locus 1 unknown 667177 Rpl36-ps11 EG667177|Gm8496 - 15|15 E1 ribosomal protein L36, pseudogene 11 pseudo 100036470 Fcs4 - - - fibroblast cell senescence 4 unknown 230393 Mm.287210 NM_001081184 ENSMUSG00000038368 Focad - - 4|4 C4 focadhesin protein-coding 19574 Rb(5.15)3Bnr Rb3Bnr - - Robertsonian translocation, Chr 5 and 15, Universitat Bonn/Rhein 3 other 329575 Mm.425123 NM_001024849 ENSMUSG00000095362 Gm14325 - - 2|2 H4 predicted gene 14325 protein-coding 109948 Zfp132 - - 7|7 zinc finger protein 132 protein-coding 102637990 XR_381696 Gm34666 - - 12 C3|12 predicted gene, 34666 ncRNA 67804 Mm.252171 NM_026386 ENSMUSG00000034484 Snx2 0610030A03Rik - 18|18 D1 sorting nexin 2 protein-coding 27400 Mm.26719 NM_013786 ENSMUSG00000025396 Hsd17b6 17betaHSD9|Hsd17b9|Rdh8 - 10|10 D3 hydroxysteroid (17-beta) dehydrogenase 6 protein-coding 100039511 Gm15110 - - X|X F2 predicted gene 15110 pseudo 493145 Mdmsc3 - - 7 32.84 cM modifier of muscularity 3 unknown 676304 Gm9672 - - 14|14 C1 predicted gene 9672 pseudo 66321 Mm.436544 1700008B11Rik - - 5|5 RIKEN cDNA 1700008B11 gene protein-coding 100415916 Mm.145528 NR_045423 ENSMUSG00000107132 Gm15997 - - 5 G3|5 predicted gene 15997 ncRNA 112012 Bw8 - - - body weight QTL 8 unknown 102637145 XR_389368 Gm34029 - - 5 E3|5 predicted gene, 34029 ncRNA 59308 Mm.27343 NM_016885 ENSMUSG00000054690 Emcn 0610012K22Rik|AI315669|Muc14 - 3|3 G3 endomucin protein-coding 102640591 XR_389416 Gm36619 - - 5 E4|5 predicted gene, 36619 ncRNA 52789 D11Bwg1529e - - - DNA segment, Chr 11, Brigham & Women's Genetics 1529 expressed unknown 52334 D7Ertd481e - - 7 69.69 cM DNA segment, Chr 7, ERATO Doi 481, expressed unknown 258303 Mm.377423 NM_146306 ENSMUSG00000046431 Olfr518 MOR268-5 - 7|7 E3 olfactory receptor 518 protein-coding 668321 Marcksl1-ps3 Gm9106|Mlp-rs3|Mrp-rs3 - 15|15 F3 MARCKS-like 1, pseudogene 3 pseudo 56397 Mm.27218 NM_019768 ENSMUSG00000031422 Morf4l2 2410017O14Rik|Mrgx|Sid393p|mKIAA0026 - X|X F1 mortality factor 4 like 2 protein-coding 78350 1700054K02Rik - - 1|1 RIKEN cDNA 1700054K02 gene protein-coding 242691 Mm.40110 NM_172876 ENSMUSG00000028850 Gpatch3 D930035B09Rik|Gpatc3 - 4|4 D2.3 G patch domain containing 3 protein-coding 102636252 XR_389481 Gm33371 - - 5 E5|5 predicted gene, 33371 ncRNA 213109 Mm.194486 NM_025871 ENSMUSG00000048874 Phf3 2310061N19Rik - 1|1 A5 PHD finger protein 3 protein-coding 102638621 Mm.460990 Gm35144 - - 13 D2.3|13 ring finger protein 7 pseudogene pseudo 383766 Mm.480305 NM_001177439 ENSMUSG00000074628 Tldc2 Gm1332 - 2|2 H1 TBC/LysM associated domain containing 2 protein-coding 104735 AA575097 - - - expressed sequence AA575097 unknown 19608 Rb(7.18)9Lub Rb9Lub - - Robertsonian translocation, Chr 7 and 18, Lubeck 9 other 102638033 XR_387341 Gm34698 - - 1 E2.3|1 predicted gene, 34698 ncRNA 230010 Gm11839 - - 4|4 A1 poly A binding protein, cytoplasmic 4 pseudogene pseudo 67126 Mm.20841 NM_025983 ENSMUSG00000016252 Atp5e 2410043G19Rik|ATPE|AV000645|Atp5f1e - 2|2 H4 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit protein-coding 102465178 NR_105766 ENSMUSG00000098407 Mir6348 Gm27412|mmu-mir-6348 - 1|1 H2.3 microRNA 6348 ncRNA 105245062 XR_872960 Gm40566 - - 12 E|12 predicted gene, 40566 ncRNA 258607 Mm.377589 NM_146614 ENSMUSG00000093934 Olfr971 MOR171-13 - 9|9 A5.1 olfactory receptor 971 protein-coding 100041618 Mm.484847 NR_030729 ENSMUSG00000098390 Gm3434 - - 9 A4|9 predicted gene 3434 ncRNA 215474 Mm.31421 NM_178677 ENSMUSG00000061536 Sec22c 4932412K21|5930407I15Rik|C530046H07|Sec22l3 - 9|9 F4 SEC22 homolog C, vesicle trafficking protein protein-coding 320531 D030074K08Rik - - 15|15 RIKEN cDNA D030074K08 gene protein-coding 97831 C86072 - - - expressed sequence C86072 unknown 102634045 XR_378698 Gm31726 - - 8 A1.1|8 predicted gene, 31726 ncRNA 62500 D10Mit158 - - 10 38.58 cM DNA segment, Chr 10, Massachusetts Institute of Technology 158 unknown 105246639 LOC105246639 - - X D high mobility group protein B1 pseudogene pseudo 72210 1700022C07Rik - - 19|19 RIKEN cDNA 1700022C07 gene protein-coding 113851 Mm.377148 NM_053224 ENSMUSG00000047203 Vmn1r54 V1ra9|VN7 - 6|6 D1 vomeronasal 1 receptor 54 protein-coding 102774 Mm.200714 NM_175325 ENSMUSG00000025235 Bbs4 AW537059|AW742241|D9Ertd464e - 9 B|9 32.01 cM Bardet-Biedl syndrome 4 (human) protein-coding 100035202 Exq4 - - 19 34.08 cM exploratory and excitability QTL 4 unknown 19185 Mm.2261 NM_008951 ENSMUSG00000005625 Psmd4 Af1|Mcb1|angiocidin - 3 F2.1|3 40.74 cM proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 protein-coding 102636836 XR_389494 Gm17202 - - 5 E5|5 52.23 cM predicted gene 17202 ncRNA 258833 Mm.377713 NM_146836 ENSMUSG00000068818 Olfr1132 MOR177-1 - 2|2 D olfactory receptor 1132 protein-coding 381390 XM_355352 ENSMUSG00000079005 Gm14147 - - 2|2 G3 predicted gene 14147 protein-coding 105243926 XR_001778925 Gm39642 - - 1 C1.2|1 predicted gene, 39642 ncRNA 105245680 XR_874220 Gm41097 - - 14 A1|14 predicted gene, 41097 ncRNA 100124450 NR_030610 ENSMUSG00000077001 Mir544 Mirn544|mmu-mir-544 - 12 F1|12 microRNA 544 ncRNA 13285 Del(14)45H Del45H - - deletion, Chr 14, Harwell 45 other 76618 Mm.450004 1700084C06Rik - - 9|9 RIKEN cDNA 1700084C06 gene protein-coding 666726 Gm8258 EG666726 - 5|5 E5 taxilin gamma pseudogene pseudo 14967 Mm.442861 NM_008200 H2-D4 H-2D4 - 17 B1|17 histocompatibility 2, D region locus 4 pseudo 100124345 Traj43 Gm16925 - 14|14 C2 T cell receptor alpha joining 43 other 665256 Gm7557 EG665256 - 12 C1|12 predicted gene 7557 pseudo 108663999 LOC108663999 - - 7 E1 Eed upstream regulatory region biological-region 73862 Mm.159077 NM_028669 ENSMUSG00000020191 Spata48 4930415F15Rik - 11|11 A1 spermatogenesis associated 48 protein-coding 105243025 XR_869860 Gm39066 - - 7 E3|7 predicted gene, 39066 ncRNA 78844 B230206I08Rik - - 7|7 RIKEN cDNA B230206I08 gene protein-coding 66841 Mm.28336 NM_025794 ENSMUSG00000027809 Etfdh 0610010I20Rik|AV001013 - 3 E3|3 34.91 cM electron transferring flavoprotein, dehydrogenase protein-coding 102638506 Gm35054 - - 11|11 predicted gene, 35054 ncRNA 102638382 Gm34962 - - 8 E1|8 predicted gene, 34962 pseudo 625222 Mm.375216 XR_001779362 Gm15520 - - 9 A4|9 predicted gene 15520 ncRNA 110120465 LOC110120465 - - - VISTA enhancer mm1177 biological-region 12870 Mm.13787 NM_007752 ENSMUSG00000003617 Cp D3Ertd555e - 3|3 A2 ceruloplasmin protein-coding 102633467 XR_388765 Gm31285 - - 11 B3|11 predicted gene, 31285 ncRNA 54150 Mm.6696 NM_017473 ENSMUSG00000040134 Rdh7 AI194929|CRAD2 - 10|10 D3 retinol dehydrogenase 7 protein-coding 109733 Rasl4 - - - RAS-like, family 4 protein-coding 110120527 LOC110120527 - - - VISTA enhancer mm1001 biological-region 319601 Mm.347707 NM_177318 ENSMUSG00000038895 Zfp653 E430039K05Rik|Znf653 - 9|9 A3 zinc finger protein 653 protein-coding 257884 Mm.368033 NM_001011738 ENSMUSG00000053815 Olfr744 MOR106-13P - 14|14 C1 olfactory receptor 744 protein-coding 107550 Tel10q - - - telomeric sequence, Chr 10, q arm protein-coding 21639 Mm.424522 Tcrg-V5 TRGV5 - 13|13 A2 T cell receptor gamma, variable 5 other 216797 Mm.339586 NM_001045521 ENSMUSG00000049291 Prss38 Gm249|Mpn2 - 11|11 B1.3 protease, serine 38 protein-coding 547012 Gm6012 EG547012 - 8|8 B2 predicted gene 6012 pseudo 319846 A130086G11Rik - - 11|11 RIKEN cDNA A130086G11 gene protein-coding 226654 Mm.46366 NM_001164525 ENSMUSG00000103711 Tstd1 AV065366|EG226654|Gm4848|KAT - 1|1 H3 thiosulfate sulfurtransferase (rhodanese)-like domain containing 1 protein-coding 242939 Mm.108557 NM_153107 ENSMUSG00000036596 Cpz AV136066 - 5|5 B2 carboxypeptidase Z protein-coding 21206 T(5;13)264Ca T264Ca - - reciprocal translocation, Chr 5 and 13, Carter 264 other 67387 Mm.27404 NM_026123 ENSMUSG00000026111 Unc50 1110002A21Rik|GMH1|UNCL|URP - 1|1 B unc-50 homolog (C. elegans) protein-coding 110863 Gdc2 Gdc-2 - - glycerolphosphate dehydrogenase 2, cytoplasmic embryonic protein-coding 383883 Gm5277 EG383883 - 3|3 E3 ribosomal protein L17 pseudogene pseudo 102631976 Platr29 Gm11463 - 2|2 86.2 cM pluripotency associated transcript 29 ncRNA 108169016 XR_001784574 Gm46897 - - 4 E1|4 predicted gene, 46897 ncRNA 102638833 XR_387454 Gm35303 - - 1 F|1 predicted gene, 35303 ncRNA 226422 Mm.34027 NM_144875 ENSMUSG00000026433 Rab29 Rab7l1 - 1|1 E4 RAB29, member RAS oncogene family protein-coding 100035780 Hdlq26 - - 10 72.31 cM HDL QTL 26 unknown 26559 Mm.125874 NM_015755 ENSMUSG00000053414 Hunk Bstk1|Mak-v - 16 C3.3|16 51.71 cM hormonally upregulated Neu-associated kinase protein-coding 22750 Mm.106970 NM_011763 ENSMUSG00000072623 Zfp9 1810048F22Rik|AU016736|Krox-4|Zfp-9|mszf79-2 - 6|6 F1 zinc finger protein 9 protein-coding 105246065 Gm41415 - - 16|16 predicted gene, 41415 ncRNA 100526476 NR_037238 ENSMUSG00000092784 Mir3077 mir-3077|mmu-mir-3077 - 14 C3|14 30.51 cM microRNA 3077 ncRNA 100034971 Bpq10 - - - blood pressure QTL 10 unknown 61867 D1Mit353 - - 1 76.84 cM DNA segment, Chr 1, Massachusetts Institute of Technology 353 unknown 628580 Mm.480301 NM_001172072 ENSMUSG00000047031 Vmn1r68 EG628580|Gm6898 - 7|7 A1 vomeronasal 1 receptor 68 protein-coding 100417127 Gm18410 - - 7|7 E3 5-azacytidine induced gene 2 pseudogene pseudo 62966 D14Mit236 - - 14 36.16 cM DNA Segment, Chr 14, Massachusetts Institute of Technology 236 unknown 102638213 XM_006523130 Gm34826 - - 16 C3.3|16 predicted gene, 34826 protein-coding 320205 A830051L15Rik - - 11|11 RIKEN cDNA A830051L15 gene protein-coding 666392 Gm8079 EG666392 - 8|8 C1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 109639 Cd24b - - - CD24b antigen protein-coding 246083 Mm.219548 NM_139223 ENSMUSG00000044222 Defb13 BD-13 - 8|8 A2 defensin beta 13 protein-coding 26944 Mm.23199 NM_012033 ENSMUSG00000032357 Tinag AI452335|TIN-ag - 9|9 D tubulointerstitial nephritis antigen protein-coding 320148 Mm.123455 NM_177083 ENSMUSG00000043740 B430306N03Rik Treml6 - 17|17 C RIKEN cDNA B430306N03 gene protein-coding 102639809 XR_379897 Gm36034 - - 9 F3|9 predicted gene, 36034 ncRNA 219228 Mm.153643 NM_001013753 ENSMUSG00000035566 Pcdh17 C030033F14Rik|Gm78 - 14|14 D3 protocadherin 17 protein-coding 432600 Mm.60039 NM_001205030 ENSMUSG00000069717 Gm11568 - - 11 D|11 predicted gene 11568 protein-coding 433806 XM_485502 Chchd2-ps Gm13202 - 4|4 E2 coiled-coil-helix-coiled-coil-helix domain containing 2, pseudogene protein-coding 110534 Fdpsl4 - - - farnesyl diphosphate synthetase-like 4 protein-coding 100503752 Gm12224 - - 11|11 32.13 cM predicted gene 12224 ncRNA 383977 Gm5286 EG383977 - 3|3 F2.1 sarcolemmal membrane-associated protein pseudogene pseudo 62043 D6Mit389 - - 6 52.14 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 389 unknown 97397 C85395 - - - expressed sequence C85395 unknown 546691 Gm5967 EG546691|Ppia-ps17_697.1 - 17|17 B1 peptidylprolyl isomerase A pseudogene 17_697.1 pseudo 100042757 Mm.100172 NR_033452 Gm4013 - - 18 B3|18 predicted gene 4013 ncRNA 102633537 Mm.227648 XR_383822 Gm31340 - - 15 A1|15 predicted gene, 31340 ncRNA 109421 Hpi2 - - 5 28.55 cM hepatic PMN infiltration 2 unknown 78558 Mm.274255 NM_030127 ENSMUSG00000029096 Htra3 2210021K23Rik|9530081K03Rik|Prsp|Tasp - 5|5 B3 HtrA serine peptidase 3 protein-coding 630415 Trav14d-1 - - 14|14 C2 T-cell receptor alpha variable region 14D-1 other 20312 Mm.103711 NM_009142 ENSMUSG00000031778 Cx3cl1 AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1 - 8 C5|8 46.79 cM chemokine (C-X3-C motif) ligand 1 protein-coding 12142 Mm.4800 NM_007548 ENSMUSG00000038151 Prdm1 Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo - 10 B2|10 23.24 cM PR domain containing 1, with ZNF domain protein-coding 192119 Mm.21135 NM_148948 ENSMUSG00000041415 Dicer1 1110006F08Rik|D12Ertd7e|mKIAA0928 - 12 E|12 54.83 cM dicer 1, ribonuclease type III protein-coding 102638787 XR_386629 Gm35268 - - 19 C1|19 predicted gene, 35268 ncRNA 100126250 Bpq22 Bpq11 - - blood pressure QTL 22 unknown 100036003 Fcs3 - - - fibroblast cell senescence 3 unknown 110960 Mm.286061 NM_033074 ENSMUSG00000022241 Tars D15Wsu59e|ThrRS - 15 A1|15 5.6 cM threonyl-tRNA synthetase protein-coding 492952 Cocia10 - - 9 23.53 cM cocaine induced activation 10 unknown 102634778 XR_379367 Gm32280 - - 9 A5.3|9 predicted gene, 32280 ncRNA 211305 Mm.225242 NM_177598 ENSMUSG00000049314 Fbxw13 E330017E16 - 9|9 F2 F-box and WD-40 domain protein 13 protein-coding 327963 Mm.297723 NM_001177570 ENSMUSG00000069476 Zfp616 Gm12330 - 11|11 B4 zinc finger protein 616 protein-coding 545280 Mm.123679 NR_033556 A630010A05Rik - - 16|16 A1 RIKEN cDNA A630010A05 gene ncRNA 102638715 XR_391577 Gm35209 - - 7 C|7 predicted gene, 35209 ncRNA 21173 T(3;6)37Ad T37Ad - - reciprocal translocation, Chr 3 and 6, Adler 37 other 102634077 XR_383542 Gm31748 - - 14 D2|14 predicted gene, 31748 ncRNA 666814 Gm8304 EG666814 - 1|1 C1.1 ribosomal protein L17 pseudogene pseudo 100503592 Mm.184925 NR_045088 ENSMUSG00000113186 A330076C08Rik - - 13|13 A4 RIKEN cDNA A330076C08 gene ncRNA 638988 Mm.483843 NR_033614 ENSMUSG00000093610 Cyp2c53-ps Cyp2c53|EG638988 - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 53-ps pseudo 72263 Mm.443289 NR_045731 ENSMUSG00000099869 1700030F04Rik - - 6|6 F1 RIKEN cDNA 1700030F04 gene ncRNA 170657 Mm.196822 NM_130876 ENSMUSG00000060691 Krtap19-1 Krtap16-2|Krtap16-9 - 16|16 C3.3 keratin associated protein 19-1 protein-coding 108167931 XR_001780346 ENSMUSG00000087184 LOC108167931 - - 11 E1 uncharacterized LOC108167931 ncRNA 100417598 Gm15773 - - 7|7 A1 PC4 and SFRS1 interacting protein 1 pseudogene pseudo 100504467 Mm.394980 NR_045751 Gm16596 - - 12 F1|12 59.46 cM predicted gene, 16596 ncRNA 319608 Mm.204834 E130014H10Rik - - 15|15 RIKEN cDNA E130014H10 gene protein-coding 102631932 XR_385529 Gm30139 - - 17 A3.3|17 predicted gene, 30139 ncRNA 546708 Gm5968 EG546708 - 18|18 A2 ribosomal protein SA pseudogene pseudo 105244602 XR_879981 Gm40192 - - 11 B3|11 predicted gene, 40192 ncRNA 100043484 Mm.410724 Gm4470 - - 19 D2|19 predicted gene 4470 unknown 620672 Mm.469836 NM_001102579 ENSMUSG00000095664 Vmn2r67 EG620672 - 7|7 D3 vomeronasal 2, receptor 67 protein-coding 105246710 XR_878546 LOC105246710 - - 1 E4 uncharacterized LOC105246710 ncRNA 109695 Ath3 Ath-3 - - atherosclerosis 3 protein-coding 102637165 XR_375704 Gm34048 - - 3 E1|3 predicted gene, 34048 ncRNA 108363 Mtv26 Mtv-26 - - mammary tumor virus locus 26 other 216984 Mm.439665 NM_001077496 ENSMUSG00000093938 Evi2b Evi-2|Evi2 - 11|11 B5 ecotropic viral integration site 2b protein-coding 108169113 Gm46939 - - 5 E3|5 predicted gene, 46939 pseudo 109762 Pol20 Pol-20 - - viral polymerase 20 protein-coding 22416 Mm.1367 NM_009522 ENSMUSG00000009900 Wnt3a Wnt-3a|vt - 11 B1.3|11 37.17 cM wingless-type MMTV integration site family, member 3A protein-coding 102639660 XR_386049 Gm35918 - - 18 A1|18 predicted gene, 35918 ncRNA 102632385 XR_373629 Gm30472 - - 1 G3|1 predicted gene, 30472 ncRNA 71457 Mm.95280 NR_045860 ENSMUSG00000113620 7420701I03Rik - - 12|12 A1.1 RIKEN cDNA 7420701I03 gene ncRNA 102640421 XR_379907 Gm36485 - - 9 F3|9 predicted gene, 36485 ncRNA 105245294 XR_872063 Gm40770 - - 10 D2|10 predicted gene, 40770 ncRNA 210155 Mm.425399 NM_177593 ENSMUSG00000058717 Gm4763 EG210155|Lypd11 - 7 A3|7 predicted gene 4763 protein-coding 387235 NR_029539 ENSMUSG00000065479 Mir125a Mirn125a - 17|17 A3.2 microRNA 125a ncRNA 102466147 NR_105745 ENSMUSG00000098408 Mir6237 Gm27411|mmu-mir-6237 - 9|9 A1 microRNA 6237 ncRNA 244332 Mm.358923 NM_183026 ENSMUSG00000046354 Defb14 BD-14 - 8|8 A1.3 defensin beta 14 protein-coding 105246274 Gm41580 - - 17|17 predicted gene, 41580 pseudo 100861647 XM_006538413 Gm21104 - - 4 A5|4 predicted gene, 21104 protein-coding 692175 Igkv14-118-1 - - 6|6 C1 immunoglobulin kappa chain variable 14-118-1 pseudo 62234 D17Mit51 - - 17 19.74 cM DNA segment, Chr 17, Massachusetts Institute of Technology 51 unknown 231889 Mm.277413 NM_001008705 ENSMUSG00000038722 Bud31 C77604|EDG-2|EDG2|G10 - 5|5 G2 BUD31 homolog protein-coding 102638837 XM_006531549 ENSMUSG00000095941 Gm21964 - - 8 D3|8 predicted gene, 21964 protein-coding 102632808 XR_388755 Gm30786 - - 11 B3|11 predicted gene, 30786 ncRNA 13332 Del(Y)1Ct-d Del(Y)1H - - deletion, Chr Y, 1 Cattanach, distal breakpoint other 258101 Mm.377350 NM_001011833 ENSMUSG00000075150 Olfr1137 MOR177-20|MOR40-9P - 2|2 D olfactory receptor 1137 protein-coding 75373 Mm.431307 4930597O21Rik - - 6|6 C1 RIKEN cDNA 4930597O21 gene protein-coding 100041825 Gm3532 100041836|Gm3537 - 14 A1|14 predicted gene 3532 pseudo 240756 Mm.87398 NM_153128 ENSMUSG00000026455 Klhl12 C3ip1 - 1|1 E4 kelch-like 12 protein-coding 18557 Mm.28130 NM_008795 ENSMUSG00000026437 Cdk18 AA682070|Ctk18|Pctk3 - 1|1 E4 cyclin-dependent kinase 18 protein-coding 78298 0610012E21Rik - - - RIKEN cDNA 0610012E21 gene protein-coding 668100 NM_001177422 Gm13693 - - 2|2 D CWC22 spliceosome-associated protein homolog pseudogene pseudo 791405 Mm.483576 Gm10002 - - 14 D2|14 predicted gene 10002 unknown 110586 Tcra-V10.5 - - - T cell receptor alpha, variable 10.5 other 20703 Mm.439695 NM_009246 ENSMUSG00000071177 Serpina1d AI118301|DOM-7|Dom4|PI4|Spi1-4 - 12 E|12 52.98 cM serine (or cysteine) peptidase inhibitor, clade A, member 1D protein-coding 76772 2410049M19Rik - - 9|9 RIKEN cDNA 2410049M19 gene protein-coding 103611159 NM_001301259 Gm38667 Pcdha7-g - 18 B2-B3|18 predicted gene, 38667 protein-coding 100417747 Gm18802 - - 1|1 C1.3 Fanconi anemia, complementation group L pseudogene pseudo 102635834 XR_388105 Gm33075 - - 8 E1|8 predicted gene, 33075 ncRNA 100504258 Mm.491777 Gm13425 - - 2|2 21.85 cM predicted gene 13425 unknown 102633239 XR_380106 4930573G07Rik - - 10|10 A1 RIKEN cDNA 4930573G07 gene ncRNA 61632 D8Mit244 - - 8 62.41 cM DNA segment, Chr 8, Massachusetts Institute of Technology 244 unknown 67486 Mm.279781 NM_001081176 ENSMUSG00000035834 Polr3g 2310047G20Rik|AV275904|RPC32|RPC7 - 13|13 C3 polymerase (RNA) III (DNA directed) polypeptide G protein-coding 18780 Mm.4675 NM_011108 ENSMUSG00000058908 Pla2g2a EF|Mom1|Pla2|sPLA2|sPla2-IIA - 4 D3|4 70.57 cM phospholipase A2, group IIA (platelets, synovial fluid) protein-coding 626215 XR_872842 ENSMUSG00000099418 Gm6657 EG626215 - 12|12 C3 predicted gene 6657 protein-coding 404195 Mm.379575 NM_206537 ENSMUSG00000067225 Cyp2c54 EG404195 - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 54 protein-coding 93686 Mm.202774 NM_053104 ENSMUSG00000033565 Rbfox2 Fbm2|Fxh|Hrnbp2|Rbm9 - 15|15 D3 RNA binding protein, fox-1 homolog (C. elegans) 2 protein-coding 102636197 XR_380146 Gm33332 - - 10 A3|10 predicted gene, 33332 ncRNA 111790 Iapls2-14 - - - intracisternal A particle, lymphocyte specific 2-14 other 102638924 Gm35368 - - 8|8 predicted gene, 35368 ncRNA 243911 Mm.113908 NM_172898 ENSMUSG00000036915 Kirrel2 C330019F22Rik|NEPH3|NLG1 - 7|7 B1 kirre like nephrin family adhesion molecule 2 protein-coding 100042132 Mm.126874 NR_151511 Gm12371 - - 4|4 A5 predicted gene 12371 ncRNA 232855 Mm.360403 NM_145577 ENSMUSG00000066838 Zfp772 - - 7|7 A1 zinc finger protein 772 protein-coding 102635434 XR_381230 Gm32773 - - 12 A1.1|12 predicted gene, 32773 ncRNA 666661 Mm.390818 NR_033577 Gm8221 - - 15 E1|15 apolipoprotein L 7c pseudogene pseudo 100035529 Tshp16 QTL-TSH15.2 - - tooth shape 16 unknown 102640863 XR_391274 Gm36830 - - 7 B2|7 predicted gene, 36830 ncRNA 435531 Gm5684 EG435531 - 17 C|17 erythrocyte protein band 4.1-like 4b pseudogene pseudo 108695204 LOC108695204 - - - ES cell cis-regulatory motif 6a biological-region 102642845 XR_882290 Gm38640 - - X A3.3|X predicted gene, 38640 ncRNA 238463 Mm.313659 NM_001033879 ENSMUSG00000021216 Tubal3 - - 13|13 A1 tubulin, alpha-like 3 protein-coding 72777 Mm.450543 2810455B08Rik - - 16|16 RIKEN cDNA 2810455B08 gene protein-coding 102633732 XR_377506 Gm31486 - - 6 A3.3|6 predicted gene, 31486 ncRNA 319200 Mm.383294 NM_175669 ENSMUSG00000047678 Gpr82 - - X|X A1.1 G protein-coupled receptor 82 protein-coding 111932 Iap3rc15 - - - intracisternal A-type particle, U3 region, SINE repeat c-15 other 654800 Mm.393956 NR_045967 A730085K08Rik - - 9|9 F4 RIKEN cDNA A730085K08 gene ncRNA 107791 Tel5p - - - telomeric sequence, Chr 5, centromere end protein-coding 100503846 Mm.490993 Gm19924 - - 12|12 A1.2 predicted gene, 19924 pseudo 70602 Mm.491142 NR_073462 ENSMUSG00000103995 5730488B01Rik - - 4|4 B1 RIKEN cDNA 5730488B01 gene ncRNA 20980 Mm.5102 NM_009307 ENSMUSG00000026452 Syt2 IP4BP|R74640|mKIAA4194|sytII - 1 E4|1 58.24 cM synaptotagmin II protein-coding 76900 Mm.6667 NM_133772 ENSMUSG00000070003 Ssbp4 1210002E11Rik|AW743380|Sspb4 - 8|8 B3.3 single stranded DNA binding protein 4 protein-coding 102631733 Mm.11689 XR_375746 ENSMUSG00000102629 Gm29999 - - 3 E3|3 predicted gene, 29999 ncRNA 330581 Mm.469909 NM_001105182 ENSMUSG00000091006 Vmn2r69 - - 7|7 D3 vomeronasal 2, receptor 69 protein-coding 93918 D16Jhu56 151A24.SP6 - - DNA segment, Chr 16, Johns Hopkins University 56 unknown 100416381 Gm18086 - - 18|18 B3 predicted gene, 18086 pseudo 62423 D13Mit206 - - 13 13.03 cM DNA segment, Chr 13, Massachusetts Institute of Technology 206 unknown 492977 Hrtq2 - - - heart weight QTL 2 unknown 105245950 XR_875337 Gm41322 - - 15 C|15 predicted gene, 41322 ncRNA 66084 Mm.153111 NM_025343 ENSMUSG00000019763 Rmnd1 0610042C05Rik|AA408137|AI462664|AW536662 - 10|10 A1 required for meiotic nuclear division 1 homolog protein-coding 85120 D3Mit107 - - 3 49.35 cM DNA segment, Chr 3, Massachusetts Institute of Technology 107 unknown 407819 Mm.29866 NM_001001181 ENSMUSG00000036299 BC031181 - - 18|18 E2 cDNA sequence BC031181 protein-coding 319477 Mm.153674 NM_176921 ENSMUSG00000066607 6030419C18Rik - - 9|9 B RIKEN cDNA 6030419C18 gene protein-coding 62266 D19Mit11.1 D19Mit11 - 19 36.26 cM DNA segment, Chr 19, Massachusetts Institute of Technology 11.1 unknown 17730 TrnF - - - tRNA tRNA 109817 H54 H(ln) - - histocompatibility 54 protein-coding 26938 Mm.40915 NM_012028 ENSMUSG00000039037 St6galnac5 AI851940|Siat7e - 3|3 H3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 100036124 Chlq11 - - - circulating hormone level QTL 11 unknown 102638759 XR_377332 Gm35246 - - 6 A1|6 predicted gene, 35246 ncRNA 16475 Mm.100253 NM_010590 ENSMUSG00000022178 Ajuba Jub - 14|14 C2 ajuba LIM protein protein-coding 108109 Fv5 Fv-5 - - Friend virus P-induced early anemia, polycythemia susceptibility unknown 432879 Mm.308666 NM_001034882 ENSMUSG00000075502 Kbtbd6 EG432879|Gm5465|Zbtbd6 - 14|14 D3 kelch repeat and BTB (POZ) domain containing 6 protein-coding 100417430 Gm18608 - - 6|6 F2 myeloid cell leukemia sequence 1 pseudogene pseudo 75177 4930533D04Rik - - 9|9 RIKEN cDNA 4930533D04 gene protein-coding 105244778 XR_868525 Gm40330 Gm42592 - 5 G1.1|5 predicted gene, 40330 ncRNA 77779 Mm.458738 NR_015567 ENSMUSG00000097855 A930007I19Rik - - 19|19 C1 RIKEN cDNA A930007I19 gene ncRNA 257984 Mm.377324 NM_001011796 ENSMUSG00000075079 Olfr1249 MOR231-16P|MOR231-17P|Olfr1541-ps1 - 2|2 E1 olfactory receptor 1249 protein-coding 105243516 XR_871066 Gm28166 - - 9 E3.3|9 predicted gene 28166 ncRNA 102634511 XR_385772 Gm32076 - - 17 E2|17 predicted gene, 32076 ncRNA 100035816 Skmw7 - - - skeletal muscle weight 7 unknown 493049 Etoms - - 12 15.67 cM etomidate sensitivity unknown 432536 Mm.33646 NM_001164166 ENSMUSG00000084135 Pom121l12 1700054H16Rik - 11|11 A2 POM121 membrane glycoprotein-like 12 protein-coding 209131 Mm.259705 NM_172468 ENSMUSG00000028385 Snx30 4732481H14Rik|C030041J06Rik - 4|4 B3 sorting nexin family member 30 protein-coding 210998 Mm.3224 NM_145959 ENSMUSG00000037119 Fam91a1 AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493 - 15 D1|15 24.76 cM family with sequence similarity 91, member A1 protein-coding 102635478 XR_872892 Gm32806 - - 12 D2|12 predicted gene, 32806 ncRNA 100114900 Trdv3 - - 14|14 C2 T cell receptor delta variable 3 pseudo 27625 D11Moh7 - - - DNA segment, Chr 11, KL Mohlke 7 unknown 71914 Mm.24842 NM_133738 ENSMUSG00000029338 Antxr2 2310046B19Rik|AW561899|CMG-2|CMG2|cI-35 - 5|5 E3 anthrax toxin receptor 2 protein-coding 77776 A430106A03Rik - - 10|10 RIKEN cDNA A430106A03 gene protein-coding 259147 Mm.376127 NM_001011530 ENSMUSG00000093825 Olfr723 MOR247-3P|MOR247-4 - 14|14 C1 olfactory receptor 723 protein-coding 100035389 Azdm5 - - - Alzheimer's disease modifier 5 unknown 433368 Gm15428 - - 1|1 G3 PCNA-associated factor pseudogene pseudo 100043886 Gm16391 EG546696 - 17|17 E2 L antigen family, member 3 pseudogene pseudo 666706 XM_011244804 ENSMUSG00000095797 Gm8246 100041804|EG666706|Gm3518 - 14|14 A1 predicted gene 8246 protein-coding 404288 Mm.377931 NM_207618 V1rd18 - - - vomeronasal 1 receptor, D18 protein-coding 100039288 Gm2140 - - 15|15 B3.2 predicted gene 2140 pseudo 100043890 Dynlt1-ps1 - - 6|6 G1 dynein light chain Tctex-type 1, pseuodogene 1 pseudo 111744 Mpmv40 Mpmv-40 - - modified polytropic murine leukemia virus 40 other 105245035 XR_870995 Gm40546 - - 9 E3.2|9 predicted gene, 40546 ncRNA 67419 Mm.318710 NM_026142 ENSMUSG00000036242 3632451O06Rik AU067705 - 14|14 C1 RIKEN cDNA 3632451O06 gene protein-coding 69399 Mm.278031 NM_197990 ENSMUSG00000032666 1700025G04Rik 2610510E02Rik|2900042O04Rik - 1|1 G2 RIKEN cDNA 1700025G04 gene protein-coding 108565 Iapls1-53 - - - intracisternal A particle, lymphocyte specific 1-53 other 434725 Mm.457958 NM_001085523 ENSMUSG00000095814 Btbd35f7 Gm14374 - X|X A1.1 BTB domain containing 35, family member 7 protein-coding 102466846 NR_106144 ENSMUSG00000098840 Mir7679 Gm27908|mmu-mir-7679 - 11|11 C microRNA 7679 ncRNA 112099 Bglq1 - - 1 38.55 cM body growth late QTL 1 unknown 110735 Idd17 - - - insulin dependent diabetes susceptibility 17 protein-coding 102466842 NR_106125 ENSMUSG00000098632 Mir7665 Gm27478|mmu-mir-7665 - 2|2 E5 microRNA 7665 ncRNA 100038383 Mm.484514 Gm10650 - - 3 G2-H1|3 predicted gene 10650 unknown 74241 Mm.260577 NM_001001565 ENSMUSG00000032997 Chpf 1700028N03Rik|AI414328|D1Bwg1363e - 1 C4|1 39.14 cM chondroitin polymerizing factor protein-coding 100504674 Gm20346 - - 9|9 33.68 cM predicted gene, 20346 ncRNA 503558 Mm.300923 NM_001010831 ENSMUSG00000037424 Taar9 Gm231|taR-9 - 10|10 A4 trace amine-associated receptor 9 protein-coding 100418258 Gm19104 - - 3|3 H2 capping protein (actin filament) muscle Z-line, alpha 1 pseudogene pseudo 100040526 Gm14465 Hspd1-14p - 2|2 C3 heat shock protein 1 (chaperonin) pseudogene 14 pseudo 61957 D7Mit321 - - 7 53.57 cM DNA Segment, Chr 7, Massachusetts Institute of Technology 321 unknown 380684 Mm.298283 NM_010904 ENSMUSG00000020396 Nefh NF-H|NF200|Nfh|mKIAA0845 - 11 A1|11 3.12 cM neurofilament, heavy polypeptide protein-coding 434076 Gm15519 EG434076 - 6 E3|6 ADP-ribosylation factor GTPase activating protein 2 pseudogene pseudo 237758 Mm.74335 NM_172794 ENSMUSG00000048728 Zfp454 B230342N19 - 11|11 B1.3 zinc finger protein 454 protein-coding 238406 Mm.188683 NM_174885 ENSMUSG00000043945 Adam6a Adam6|tMDCIV - 12|12 F1 a disintegrin and metallopeptidase domain 6A protein-coding 71575 Mm.57626 XR_386048 9130001E16Rik - - 18|18 A1 RIKEN cDNA 9130001E16 gene ncRNA 223255 Mm.390756 NM_145465 ENSMUSG00000063410 Stk24 1810013H02Rik|C76483|MST-3|Mst3|STE20 - 14 E5|14 64.95 cM serine/threonine kinase 24 protein-coding 625672 Gm6612 EG625672 - 15|15 E1 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 pseudogene pseudo 100043777 Gm4640 2810016G10Rik - 6 F1|6 predicted gene 4640 unknown 21642 tct1 tct|tct-1 - - t complex tail interaction 1 unknown 102643187 Gm38663 - - X A5|X predicted gene, 38663 pseudo 108501 Minte - - - Moloney MuLV integration site, EC cells, e other 102634035 XR_388305 Gm31719 - - 19 A|19 predicted gene, 31719 ncRNA 103489 AW742317 - - - expressed sequence AW742317 unknown 60736 D1Mit45 - - 1 46.74 cM DNA segment, Chr 1, Massachusetts Institute of Technology 45 unknown 384021 Mup-ps15 Gm12553 - 4|4 B3 major urinary protein, pseudogene 15 pseudo 75212 Mm.101141 NM_029211 ENSMUSG00000070426 Rnf121 4930544L10Rik - 7|7 E2 ring finger protein 121 protein-coding 668791 Gm9363 EG668791 - 14|14 E4 TatD DNase domain containing 2 pseudogene pseudo 108168929 XR_001784245 Gm46844 - - 4 A1|4 predicted gene, 46844 ncRNA 102636989 XR_870065 ENSMUSG00000031085 LOC102636989 - - 7 F5 actin-like protein-coding 68874 Mm.10756 NM_001033039 ENSMUSG00000045259 Klhdc9 1190002J23Rik|AA087357|ESTM31 - 1 H3|1 79.36 cM kelch domain containing 9 protein-coding 66561 Mm.422867 NM_025634 ENSMUSG00000090356 Teddm3 2310042E22Rik - 16|16 B1 transmembrane epididymal family member 3 protein-coding 61201 D1Mit128 - - - DNA segment, Chr 1, Massachusetts Institute of Technology 128 unknown 109280106 LOC109280106 Mm1317 - - VISTA enhancer mm1317 biological-region 232925 Mm.37237 NM_001003393 ENSMUSG00000066756 Igfl3 Gm580|Igfl|Rprc483 - 7|7 A2 IGF-like family member 3 protein-coding 233090 Mm.261648 NM_177446 ENSMUSG00000046438 Scgb2b24 Abpbg24|Abpz|C2b|Scgb2b3 - 7|7 B1 secretoglobin, family 2B, member 24 protein-coding 105243558 XR_871317 Gm39447 - - 9 F3|9 predicted gene, 39447 ncRNA 664778 Gm10350 - - 18|18 A1 predicted gene 10350 pseudo 110675 Idd4 Idd-4 - 11 45.76 cM insulin dependent diabetes susceptibility 4 protein-coding 111869 Iap3ra5 - - - intracisternal A-type particle, U3 region, SINE repeat a-5 other 258891 Mm.223301 NM_146889 ENSMUSG00000044560 Olfr1302 MOR248-3 - 2|2 E3 olfactory receptor 1302 protein-coding 62021 D4Mit328 - - 4 39.57 cM DNA segment, Chr 4, Massachusetts Institute of Technology 328 unknown 78245 Mm.99733 NM_030063 ENSMUSG00000026644 Acbd7 9230116B18Rik - 2|2 A1 acyl-Coenzyme A binding domain containing 7 protein-coding 20300 Mm.7275 NM_009138 ENSMUSG00000023235 Ccl25 A130072A22Rik|AI852536|CKb15|Scya25|TECK - 8 A1.1|8 2.01 cM chemokine (C-C motif) ligand 25 protein-coding 640892 Gm7313 - - 14|14 E3 low molecular weight phosphotyrosine protein phosphatase-like pseudo 100044082 LOC100044082 - - 1|1 ethanolamine kinase 2-like pseudo 85087 DXMit93 - - X 39.95 cM DNA segment, Chr X, Massachusetts Institute of Technology 93 unknown 27585 D5Buc13 344L2.SP6 - 5 37.54 cM DNA segment, Chr 5, Bucan 13 unknown 102632191 XR_377754 Gm30331 - - 6 C1|6 predicted gene, 30331 ncRNA 58521 Mm.425101 NM_025613 ENSMUSG00000091337 Eid1 2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014 - 2|2 F1 EP300 interacting inhibitor of differentiation 1 protein-coding 56365 Mm.24882 NM_019701 ENSMUSG00000006216 Clcnkb CLCKB|Clc-Ka|Clck2|Clcnk1l - 4|4 D3 chloride channel, voltage-sensitive Kb protein-coding 100035984 Modor3 - - - modifier of ocular retardation 3 unknown 93835 Mm.197639 NM_033603 ENSMUSG00000021278 Amn - - 12 F1|12 60.94 cM amnionless protein-coding 258116 Olfr1438-ps1 MOR215-4 - 19|19 A olfactory receptor 1438, pseudogene 1 pseudo 14302 Mm.332432 NM_010237 ENSMUSG00000019779 Frk BSK|BSK/IYK|C85044|GTK|RAK - 10|10 B1 fyn-related kinase protein-coding 72964 Mm.440191 2900056B19Rik - - 5|5 RIKEN cDNA 2900056B19 gene protein-coding 224582 Mm.469851 NM_001104572 ENSMUSG00000091259 Vmn2r110 EG224582 - 17|17 A3.2 vomeronasal 2, receptor 110 protein-coding 102639020 Mm.409741 XR_391247 Gm12781 - - 7 B2|7 20.46 cM predicted gene 12781 ncRNA 100217465 NR_028559 Snord111 MBII-82 - 8 E1|8 small nucleolar RNA, C/D box 111 snoRNA 109492 Nidd1 - - - non-insulin-dependent diabetes mellitus 1 unknown 111256 Dnaja1-ps Hsj2-ps - 5 A3|5 10.0 cM DnaJ heat shock protein family (Hsp40) member A1, pseudogene pseudo 108168851 Gm38237 - - 3 C|3 NHP2-like protein 1 pseudogene pseudo 73294 Mm.396215 1700040L08Rik Gm44195 - - RIKEN cDNA 1700040L08 gene protein-coding 62977 D16Mit193 - - 16 23.29 cM DNA Segment, Chr 16, Massachusetts Institute of Technology 193 unknown 100126439 Psds3 - - - psoriasis-like skin disease severity 3 unknown 102637118 XR_386243 Gm34011 - - 18 D3|18 predicted gene, 34011 ncRNA 20343 Mm.1461 NM_011346 ENSMUSG00000026581 Sell AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1 - 1 H2.2|1 71.37 cM selectin, lymphocyte protein-coding 104375 Ezg - - - extent of zona glomerulosa unknown 654472 Mm.347777 NR_002890 Gm12070 - - 11 A3.3|11 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105245237 LOC105245237 - - 10 C1 60S ribosomal protein L23a pseudogene pseudo 624367 Mm.445185 NM_001037921 ENSMUSG00000021846 Gm6498 EG624367 - 14 C1|14 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105245154 XR_871644 Gm40646 - - 10 B3|10 predicted gene, 40646 ncRNA 666011 Gm7890 EG666011 - 6|6 B2.3 predicted gene 7890 pseudo 110748 Zfp161-rs1 - - - zinc finger protein 161, related sequence 1 protein-coding 102638847 XM_006535334 ENSMUSG00000109771 Gm35315 Gm20090 - 5 F|5 predicted gene, 35315 protein-coding 102632938 Mm.417656 NR_152723 ENSMUSG00000090087 Gm15939 - - 10 B1|10 18.68 cM predicted gene 15939 ncRNA 240776 Mm.483845 NM_001081027 ENSMUSG00000052726 Kcnt2 E330038N15Rik|Slick - 1|1 F potassium channel, subfamily T, member 2 protein-coding 60755 D2Mit49 - - 2 83.83 cM DNA segment, Chr 2, Massachusetts Institute of Technology 49 unknown 11793 Mm.22264 NM_053069 ENSMUSG00000038160 Atg5 2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy - 10 B2|10 23.24 cM autophagy related 5 protein-coding 100039855 Gm2461 - - 9 A1|9 predicted gene 2461 protein-coding 17743 TrnS2 - - - tRNA tRNA 665288 Gm7571 EG665288 - 6 G3|6 protein phosphatase 2, regulatory subunit B, delta isoform pseudogene pseudo 104267 Tsp5 - - - tumor suppressor region 5 protein-coding 105243861 XR_865187 Gm39592 - - 1 A3|1 predicted gene, 39592 ncRNA 105245862 XR_874975 Gm41250 - - 14 E4|14 predicted gene, 41250 ncRNA 57377 Mm.28188 NM_020619 ENSMUSG00000030036 Mogs 1810017N02Rik|AI181835|Gcs1 - 6|6 C3 mannosyl-oligosaccharide glucosidase protein-coding 100036296 Obwq3 - - 6 49.71 cM obesity and body weight QTL 3 unknown 102639608 Mm.446935 Gm16725 - - 8|8 10.3 cM predicted gene, 16725 ncRNA 244867 Mm.400352 NM_175535 ENSMUSG00000053199 Arhgap20 6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391 - 9|9 A5.3 Rho GTPase activating protein 20 protein-coding 622283 Mm.447602 NR_045331 Mir1a-1hg EG622283|Gm6307 - 2|2 H4 Mir1a-1 and Mir133a-2 host gene ncRNA 68767 Mm.296545 NM_026833 ENSMUSG00000024101 Washc1 1110049F14Rik|ORF19|Wash|Wash1 - 17|17 E1.1 WASH complex subunit 1 protein-coding 27495 17F4R - - - DNA segment, 17F4R unknown 70524 Mm.112365 5730414N17Rik BB095384 - - RIKEN cDNA 5730414N17 gene protein-coding 57312 Mm.289402 NM_020560 ENSMUSG00000031533 Mrps31 1500002D03Rik|AA960481|Imogen38|Imogen44 - 8|8 A2 mitochondrial ribosomal protein S31 protein-coding 100316839 NR_035422 ENSMUSG00000080533 Mir1191 Mirn1191|mmu-mir-1191|mmu-mir-1191a - 7 A3|7 15.84 cM microRNA 1191 ncRNA 258521 Mm.271434 NM_146528 ENSMUSG00000066905 Olfr860 MOR146-2 - 9|9 A3 olfactory receptor 860 protein-coding 692142 Igkv13-76 - - 6|6 C1 immunoglobulin kappa chain variable 13-76 pseudo 436523 Mm.449428 NM_001038997 ENSMUSG00000058119 Gm5771 EG436523 - 6|6 B1 predicted gene 5771 protein-coding 27041 Mm.39631 NM_013716 ENSMUSG00000018583 G3bp1 AI849976|B430204O07|C87777|G3bp|mKIAA4115 - 11|11 B1.3 GTPase activating protein (SH3 domain) binding protein 1 protein-coding 18326 Olfr28 MTPCR11 - - olfactory receptor 28 protein-coding 78788 4930421C12Rik - - 5|5 RIKEN cDNA 4930421C12 gene protein-coding 18933 Mm.288642 NM_011127 ENSMUSG00000026586 Prrx1 A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox - 1 H2.1|1 70.53 cM paired related homeobox 1 protein-coding 102639988 XR_379303 Gm36170 - - 9 A5.1|9 predicted gene, 36170 ncRNA 102636800 Gm33772 - - 11|11 predicted gene, 33772 ncRNA 73414 Mm.353772 1700061A03Rik - - 19|19 A RIKEN cDNA 1700061A03 gene protein-coding 434794 Mm.104764 NM_001081642 ENSMUSG00000079845 Xlr4a - - X|X A7.3 X-linked lymphocyte-regulated 4A protein-coding 11988 Mm.4676 NM_007514 ENSMUSG00000031596 Slc7a2 20.5|AI158848|Atrc2|CAT-2|Cat2|Tea - 8 A4|8 23.89 cM solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 protein-coding 667073 Gm8444 EG667073 - 15|15 E1 predicted gene 8444 pseudo 105244653 XR_868003 Gm40225 - - 4 C7|4 predicted gene, 40225 ncRNA 105244074 XR_865942 Gm39752 - - 2 A1|2 predicted gene, 39752 ncRNA 73021 Panct1 2900057E15Rik - X|X pluripotency-associated noncoding transcript 1 ncRNA 620942 Mup-ps6 EG620942|Gm6191 - 4|4 B3 major urinary protein, pseudogene 6 ncRNA 104705 Mm.403571 BB162755 - - - expressed sequence BB162755 unknown 102640835 XR_391212 Gm36809 - - 7 A3|7 predicted gene, 36809 ncRNA 208659 Mm.208662 NM_153782 ENSMUSG00000020614 Fam20a AI606893 - 11|11 E1 family with sequence similarity 20, member A protein-coding 102640360 XR_872369 Gm12119 - - 11 A4|11 19.21 cM predicted gene 12119 ncRNA 100416435 Gm14783 - - X|X C2 PR domain containing 4 pseudogene pseudo 29863 Mm.425617 NM_013875 ENSMUSG00000019990 Pde7b - - 10|10 A3 phosphodiesterase 7B protein-coding 100043030 Rps27-ps2 Gm4180 - 11 B3|11 ribosomal protein S27, pseudogene 2 pseudo 58245 Mm.275411 NM_021434 ENSMUSG00000022131 Gpr180 AB041545|E130016I23Rik|Itr - 14|14 E4 G protein-coupled receptor 180 protein-coding 100043752 Mm.308628 NR_003289 Rps2-ps6 EG628962|Gm16408 - 14|14 D3 ribosomal protein S2, pseudogene 6 pseudo 109774 Lamr10 - - - laminin receptor 10 protein-coding 18302 Mm.123013 NM_010959 ENSMUSG00000009654 Oit3 EF-9|LZP - 10|10 B4 oncoprotein induced transcript 3 protein-coding 74168 Mm.20387 NM_023740 ENSMUSG00000025157 Zdhhc16 1500015N03Rik|Aph2 - 19|19 C3 zinc finger, DHHC domain containing 16 protein-coding 63953 Mm.404024 NM_022019 ENSMUSG00000039384 Dusp10 2610306G15Rik|AI158871|MKP-5|MKP5 - 1|1 H5 dual specificity phosphatase 10 protein-coding 107866 Tg.Myc - - - 50-100 copies Myc inserted at a single site protein-coding 637027 NM_001101595 Mageb7-ps EG637027|Gm7197|Mageb7|mMage-b7 - X|X C1 melanoma antigen, family B, 7, pseudogene pseudo 114751 Mors2 - - 3 52.74 cM modifier of obesity related sterility 2 unknown 62528 D11Mit152 - - 11 14.44 cM DNA segment, Chr 11, Massachusetts Institute of Technology 152 unknown 102632780 XR_390640 Gm30764 - - 4 B3|4 predicted gene, 30764 ncRNA 68999 Mm.257445 NM_026904 ENSMUSG00000036977 Anapc10 1500026N15Rik|A830003M23Rik|APC10 - 8 C1|8 37.79 cM anaphase promoting complex subunit 10 protein-coding 100035215 Tmc1m3 - - - Tmc1 modifier 3 unknown 209357 Mm.185467 NM_181410 ENSMUSG00000029387 Gtf2h3 34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH - 5 F|5 63.67 cM general transcription factor IIH, polypeptide 3 protein-coding 64705 Mm.275974 NM_022722 ENSMUSG00000022304 Dpys 1200017I10Rik|1300004I01Rik|DHP|DHPase - 15|15 B3.1 dihydropyrimidinase protein-coding 108168290 XR_001781930 Gm46552 - - 16 B4|16 predicted gene, 46552 ncRNA 100042178 Mm.381362 XR_391021 ENSMUSG00000085069 Gm13111 - - 4|4 E2 predicted gene 13111 unknown 69457 Mm.58105 NM_183281 ENSMUSG00000046748 Tmem45a2 2310005G13Rik - 16|16 C1.1 transmembrane protein 45A2 protein-coding 61168 D15Mit80 - - 15 3.82 cM DNA segment, Chr 15, Massachusetts Institute of Technology 80 unknown 27937 D3Nds3 - - 3 61.33 cM DNA segment, Chr 3, Nuffield Department of Surgery 3 unknown 18597 Mm.34775 NM_008810 ENSMUSG00000031299 Pdha1 Pdha-1 - X F4|X 73.95 cM pyruvate dehydrogenase E1 alpha 1 protein-coding 93941 D16Jhu81 462O14.SP6 - - DNA segment, Chr 16, Johns Hopkins University 81 unknown 102631840 Mm.404052 XR_381044 Gm11999 - - 11 A1|11 7.0 cM predicted gene 11999 ncRNA 77538 Mm.128235 NR_131087 ENSMUSG00000112227 C330004P14Rik - - 10|10 A2 RIKEN cDNA C330004P14 gene ncRNA 13591 Mm.439662 NM_007897 ENSMUSG00000057098 Ebf1 Ebf|O/E-1|OE-1|Olf-1|Olf1 - 11 B1.1|11 26.45 cM early B cell factor 1 protein-coding 102637858 XR_389375 Gm34563 - - 5 E3|5 predicted gene, 34563 ncRNA 676564 Gm10064 EG665452 - 5|5 F 60S ribosomal protein L32-like pseudo 665225 Mm.351128 Gm7544 4733401I12Rik - 1|1 C5 predicted gene 7544 unknown 664805 Mm.329543 NM_001109743 ENSMUSG00000091519 Skor2 Corl2|EG664805|Fussel18|Gm7348 - 18|18 E3 SKI family transcriptional corepressor 2 protein-coding 70143 Mm.417835 NR_040643 ENSMUSG00000085394 2210414B05Rik - - 4|4 A1 RIKEN cDNA 2210414B05 gene ncRNA 83925 Mm.30466 NM_032000 ENSMUSG00000038679 Trps1 AI115454|AI447310|D15Ertd586e - 15 C|15 19.18 cM transcriptional repressor GATA binding 1 protein-coding 105741 AA511283 - - - expressed sequence AA511283 unknown 105244917 XR_872807 Gm40439 - - 12 C3|12 predicted gene, 40439 ncRNA 12335 Mm.458021 NM_007601 ENSMUSG00000079110 Capn3 AI323605|Capa-3|Capa3|Lp82|p94 - 2 E5|2 60.31 cM calpain 3 protein-coding 26885 Mm.22279 NM_011997 ENSMUSG00000028282 Casp8ap2 D4Ertd659e|FLASH - 4 A5|4 14.27 cM caspase 8 associated protein 2 protein-coding 54216 Mm.332387 NM_018764 ENSMUSG00000029108 Pcdh7 - - 5|5 C1 protocadherin 7 protein-coding 105245475 XR_873275 Gm40924 - - 13 A3.3|13 predicted gene, 40924 ncRNA 100126457 Trav7n-6 Gm10905 - 14|14 C2 T cell receptor alpha variable 7N-6 other 15257 Mm.20827 NM_010432 ENSMUSG00000008730 Hipk1 1110062K04Rik|Myak - 3|3 F2.2 homeodomain interacting protein kinase 1 protein-coding 70016 1700030N18Rik - - 5|5 RIKEN cDNA 1700030N18 gene protein-coding 100416111 Gm17922 - - 14|14 E2.1 nucleophosmin 1 pseudogene pseudo 108167481 LOC108167481 - - 7 B3 RNA-binding protein 3 pseudogene pseudo 100040892 Gm3027 - - 5|5 A1 predicted gene 3027 pseudo 75852 XR_376129 4930590L14Rik - - 3|3 H1 RIKEN cDNA 4930590L14 gene ncRNA 102635845 XM_006523144 Gm33084 - - 16 C3.3|16 predicted gene, 33084 protein-coding 666721 Gm11663 - - 11|11 E1 predicted gene 11663 pseudo 433923 NM_001081233 Gm5560 EG433923|Slc25a5 - 5|5 E3 solute carrier family 25 member 5 pseudogene pseudo 100041649 Mpc1-ps Brp44l-ps|Gm3452 - 12 F1|12 mitochondrial pyruvate carrier 1, pseudogene pseudo 100312530 Vmn1r-ps37 - - 6 E1|6 vomeronasal 1 receptor, pseudogene 37 pseudo 102638281 XR_373794 ENSMUSG00000103613 Gm34882 - - 1 H5|1 predicted gene, 34882 ncRNA 100417875 Gm18872 - - 12|12 D1 D4, zinc and double PHD fingers, family 3 pseudogene pseudo 223435 Mm.485422 NM_001081302 ENSMUSG00000022263 Trio 6720464I07Rik|AA408740|Solo - 15|15 B1 triple functional domain (PTPRF interacting) protein-coding 664953 Gm7423 EG664953 - 17|17 A2 predicted gene 7423 pseudo 433611 LOC433611 - - 3|3 F1 uncharacterized LOC433611 unknown 100416733 Gm11510 - - 11|11 C predicted gene 11510 pseudo 104433 Mm.453530 NR_002902 ENSMUSG00000064925 Snora62 E2|MBI-13|MBI-136|Rnu108 - 9|9 F4 small nucleolar RNA, H/ACA box 62 snoRNA 111588 Pmv35 Pmv-35 - - polytropic murine leukemia virus 35 other 78693 C030004M13Rik - - 17|17 RIKEN cDNA C030004M13 gene protein-coding 102240 AU022882 - - - expressed sequence AU022882 unknown 62220 D16Mit78a D16Mit78 - 16 44.68 cM DNA segment, Chr 16, Massachusetts Institute of Technology 78a unknown 74627 Mm.410828 NR_040694 ENSMUSG00000107144 4930413E15Rik - - 5|5 F RIKEN cDNA 4930413E15 gene ncRNA 27469 16T - - - DNA segment, 16T unknown 75315 Mm.461295 NR_126439 4930553C11Rik - - 11|11 A5 RIKEN cDNA 4930553C11 gene ncRNA 18011 Mm.313651 NM_021360 ENSMUSG00000006435 Neurl1a 2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67 - 19 C3|19 39.39 cM neuralized E3 ubiquitin protein ligase 1A protein-coding 258353 Mm.377450 NM_146356 ENSMUSG00000073997 Olfr521 MOR101-2 - 7|7 E1 olfactory receptor 521 protein-coding 100502696 Gm19326 - - 10|10 38.58 cM cytochrome b-c1 complex subunit 7-like pseudo 723964 NR_029717 ENSMUSG00000065567 Mir30c-2 Mirn30c-2|mir-30c-2 - 1|1 A5 microRNA 30c-2 ncRNA 62076 D10Mit61 - - 10 34.8 cM DNA segment, Chr 10, Massachusetts Institute of Technology 61 unknown 100125874 Cyp3a61-ps1 Cyp3a61-ps|Gm20577 - 5|5 G2 cytochrome P450, family 3, subfamily a, member 61, pseudogene 1 pseudo 24113 Mm.307165 NM_011912 ENSMUSG00000034777 Vax2 Dres93 - 6 C3|6 35.94 cM ventral anterior homeobox 2 protein-coding 102638649 XR_387887 Gm35162 - - 8 C3|8 predicted gene, 35162 ncRNA 53296 200C3 - - - DNA segment, 200C3 Research Genetics unknown 78755 Mm.28559 NM_030167 ENSMUSG00000036022 Fam122b 4632404H22Rik|AI256344|SPACIA2 - X|X A5 family with sequence similarity 122, member B protein-coding 170697 Trem4 - - - triggering receptor expressed on myeloid cells 4 protein-coding 77433 Mm.159919 NR_040338 Redrum 9430076G02Rik - 18|18 D3 Redrum, erythroid developmental long intergenic non-protein coding transcript ncRNA 102637037 XR_374934 Gm33947 - - 2 E5|2 predicted gene, 33947 ncRNA 52767 D1Wsu198e - - - DNA segment, Chr 1, Wayne State University 198, expressed unknown 11765 Mm.37210 NM_009677 ENSMUSG00000031731 Ap1g1 AA409002|AU041323|AW551707|Adtg|D8Ertd374e - 8 D3|8 57.26 cM adaptor protein complex AP-1, gamma 1 subunit protein-coding 72026 Mm.158211 NM_028063 ENSMUSG00000022386 Trmu 1110005N20Rik|1600025P05Rik|AI314320|Trmt1 - 15|15 E2 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 74147 Mm.28100 NM_023737 ENSMUSG00000022853 Ehhadh 1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE - 16|16 B1 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase protein-coding 61963 D8Mit293 - - 8 23.05 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 293 unknown 17158 Mm.2433 NM_008549 ENSMUSG00000024085 Man2a1 Mana-2|Mana2|Map-2 - 17|17 E1.1 mannosidase 2, alpha 1 protein-coding 61830 D2Mit322 - - 2 25.45 cM DNA segment, Chr 2, Massachusetts Institute of Technology 322 unknown 73009 Mm.443541 NR_045365 2900057B20Rik - - 18|18 E3 RIKEN cDNA 2900057B20 gene ncRNA 109280127 LOC109280127 Mm1387 - - VISTA enhancer mm1387 biological-region 103836 Mm.41440 NM_182996 ENSMUSG00000037243 Zfp692 AI746306|AI839920|Zfp692-ps|Znf692 - 11|11 B1.3 zinc finger protein 692 protein-coding 330390 Mm.484161 NM_001128092 ENSMUSG00000090667 Gm765 - - 6|6 D3 predicted gene 765 protein-coding 632971 Mm.475610 NM_001128090 ENSMUSG00000092164 Rergl EG632971 - 6|6 G2 RERG/RAS-like protein-coding 68020 Mm.425762 NM_026511 ENSMUSG00000037787 Apopt1 1700081D05Rik|2810002N01Rik|Apop-1|Apop1 - 12|12 F1 apoptogenic, mitochondrial 1 protein-coding 102636807 XM_006511611 Gm33778 - - 9 E3.3|9 predicted gene, 33778 protein-coding 102635703 XR_373560 Gm32974 - - 1 C4|1 predicted gene, 32974 ncRNA 107403166 LOC107403166 - - - origin of replication in ribosomal DNA intergenic spacer biological-region 723875 NR_030253 ENSMUSG00000070128 Mir485 Mirn485|mir-485|mmu-mir-485 - 12 F1|12 microRNA 485 ncRNA 791278 Mm.483492 Gm16495 - - - predicted gene 16495 unknown 619785 Gm6101 EG619785 - 1|1 A1 actinin alpha 4 pseudogene pseudo 16412 Mm.263396 NM_010578 ENSMUSG00000025809 Itgb1 4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa - 8|8 E2 integrin beta 1 (fibronectin receptor beta) protein-coding 108167911 XR_001780255 Gm46287 - - 11 B4|11 predicted gene, 46287 ncRNA 100417112 Gm18403 - - 3|3 F1 C-terminal binding protein 2 pseudogene pseudo 105246612 XR_877973 Gm41879 - - 19 D3|19 predicted gene, 41879 ncRNA 102467280 n-TCgca32 n-Tc32 - 6 B2.3|6 nuclear encoded tRNA cysteine 32 (anticodon GCA) tRNA 78163 Mm.243828 NR_046190 ENSMUSG00000105234 4930459L07Rik - - 5|5 C1 RIKEN cDNA 4930459L07 gene ncRNA 110120379 LOC110120379 - - - VISTA enhancer mm551 biological-region 21369 tb - - - tumbler unknown 108178 Rnu3b-ps4 - - - U3B small nuclear RNA pseudogene 4 pseudo 328646 Mm.404748 NR_046162 ENSMUSG00000096918 Gm16863 A830060N17 - 16|16 B1 predicted gene, 16863 ncRNA 100037412 Dbmc3 Dmc3 - - diabetes mRNA cluster 3 unknown 76482 Mm.196596 NM_029623 ENSMUSG00000024410 3110002H16Rik 2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98 - 18|18 A1 RIKEN cDNA 3110002H16 gene protein-coding 102636142 Mm.417611 NR_131194 4930526H09Rik - - 13 D2.2|13 RIKEN cDNA 4930526H09 gene ncRNA 320277 Mm.127822 NM_177123 ENSMUSG00000072663 Spef2 C230086A09Rik - 15|15 A1 sperm flagellar 2 protein-coding 16430 Mm.2863 NM_008408 ENSMUSG00000032116 Stt3a AA408947|BB081708|Itm1 - 9 A4|9 20.67 cM STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae) protein-coding 627245 Rps7-ps2 EG627245|Gm6742 - 12|12 A1.1 ribosomal protein S7, pseudogene 2 pseudo 271005 Mm.180969 NM_178253 ENSMUSG00000051890 Klhdc1 - - 12|12 C2 kelch domain containing 1 protein-coding 105246266 Gm41574 - - 17|17 predicted gene, 41574 ncRNA 102632804 XR_377760 Gm30782 - - 6 C1|6 predicted gene, 30782 ncRNA 15144 Hc13 Cen13 - - heterochromatin, Chr 13 other 53612 Mm.265929 NM_016800 ENSMUSG00000021124 Vti1b AU015348|GES30|MVti1b|SNARE|Vti1-rp1 - 12|12 C3 vesicle transport through interaction with t-SNAREs 1B protein-coding 108555 Iapls3-27 - - - intracisternal A particle, lymphocyte specific 3-27 other 227723 Mm.25504 NM_172661 ENSMUSG00000039262 Prrc2b 5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515 - 2|2 B proline-rich coiled-coil 2B protein-coding 399593 8030497I03Rik - - - RIKEN cDNA 8030497I03 gene protein-coding 105246205 LOC105246205 - - - uncharacterized LOC105246205 ncRNA 102635953 XR_374805 Gm33160 - - 2 E1|2 predicted gene, 33160 ncRNA 102632410 Gm29002 - - Y|Y predicted gene 29002 protein-coding 75208 Mm.84580 NR_040600 ENSMUSG00000105765 4930539C22Rik - - 3|3 G3 RIKEN cDNA 4930539C22 gene ncRNA 21669 Tdgf1-ps2 Tdgf3 - 17 A1|17 8.39 cM teratocarcinoma-derived growth factor, pseudogene 2 pseudo 22187 Mm.371592 NM_011664 ENSMUSG00000019505 Ubb AL033289|Rps27a|Uba52|Ubb2|Ubc - 11 B2|11 38.46 cM ubiquitin B protein-coding 545447 XM_011239911 Olfr1285 MOR248-17P - 2|2 E3 olfactory receptor 1285 protein-coding 107858 Tel18p - - - telomeric sequence, Chr 18, centromere end protein-coding 111648 Ms21 MMS21 - - minisatellites detected by probe MMS21 other 105243238 XR_879010 Gm39212 - - 8 C2|8 predicted gene, 39212 ncRNA 30794 Mm.21830 NM_019417 ENSMUSG00000020388 Pdlim4 Ril - 11 B1.3|11 32.13 cM PDZ and LIM domain 4 protein-coding 100316736 NR_035527 ENSMUSG00000076333 Mir599 mmu-mir-599 - 15 B3.1|15 14.46 cM microRNA 599 ncRNA 665772 Gm7780 EG665772 - 9|9 F3 predicted gene 7780 pseudo 102635081 XR_379050 Gm32507 Gm45284 - 8 B3.1|8 predicted gene, 32507 ncRNA 100526518 NR_037225 ENSMUSG00000105524 Mir3065 mir-3065|mmu-mir-3065 - 11 E2|11 83.96 cM microRNA 3065 ncRNA 18686 Mm.443876 NM_011080 Phxr1 SP34 - 2|2 A1 per-hexamer repeat gene 1 ncRNA 108202 Nras-ps1 - - - neuroblastoma ras oncogene, pseudogene 1 pseudo 69248 Mm.235369 NR_045046 ENSMUSG00000085555 2610035F20Rik - - 14|14 E5 RIKEN cDNA 2610035F20 gene ncRNA 100041849 Gm3543 - - 14 B|14 predicted gene 3543 protein-coding 16851 lg - - - lid gap unknown 104145 Pp - - - passive performance unknown 102635101 Gm32522 - - 12|12 predicted gene, 32522 pseudo 76873 Mm.436935 NR_126077 ENSMUSG00000102224 4930447F24Rik - - 9|9 F1 RIKEN cDNA 4930447F24 gene ncRNA 102634738 Mm.489020 XR_373227 ENSMUSG00000100053 Gm28154 - - 1 A3|1 predicted gene 28154 ncRNA 100043942 Gm14503 - - X A1.1|X zinc finger protein 161 pseudogene pseudo 97129 C76876 - - - expressed sequence C76876 unknown 24047 Mm.6660 NM_011888 ENSMUSG00000071005 Ccl19 CKb11|ELC|MIP3B|Scya19|exodus-3 - 4|4 A5 chemokine (C-C motif) ligand 19 protein-coding 100418293 Gm14910 - - X|X E1 predicted gene 14910 pseudo 100416032 Gm17087 - - 17|17 A1 predicted gene 17087 pseudo 320717 Mm.489670 NM_177242 ENSMUSG00000038582 Pptc7 9130017A15Rik|AA672638|AI848390|TA-PP2C - 5|5 F PTC7 protein phosphatase homolog protein-coding 100416068 Gm14776 - - X|X C1 nucleophosmin 1 pseudogene pseudo 61154 D11Mit77 - - 11 10.44 cM DNA segment, Chr 11, Massachusetts Institute of Technology 77 unknown 78034 Mm.243851 NR_131108 ENSMUSG00000107681 4930528H21Rik Gm43986 - 6|6 A1 RIKEN cDNA 4930528H21 gene ncRNA 102639470 LOC102639470 - - 4 A1 60S ribosomal protein L24 pseudogene pseudo 72093 Mm.271208 NR_029440 2010320M18Rik - - 8|8 B3.3 RIKEN cDNA 2010320M18 gene ncRNA 668066 Gm14418 - - 2|2 H4 novel KRAB box and zinc finger, C2H2 type domain containing protein pseudo 399617 A130019P10Rik - - - RIKEN cDNA A130019P10 gene protein-coding 237625 Mm.100476 NM_172791 ENSMUSG00000034579 Pla2g3 - - 11|11 A1 phospholipase A2, group III protein-coding 75493 Mm.396146 NR_040507 ENSMUSG00000101565 1700003L19Rik - - 16|16 A1 RIKEN cDNA 1700003L19 gene ncRNA 109279847 LOC109279847 Mm9 - - VISTA enhancer mm9 biological-region 57441 Mm.12239 NM_020567 ENSMUSG00000006715 Gmnn AW546347|Gem - 13|13 A3.1 geminin protein-coding 74375 Mm.332950 NM_028900 ENSMUSG00000029708 Gcc1 4932417P04Rik - 6|6 A3.3 golgi coiled coil 1 protein-coding 140491 Mm.209429 NM_080464 ENSMUSG00000042717 Ppp1r3a GM|RG1|RGL - 6|6 A1 protein phosphatase 1, regulatory (inhibitor) subunit 3A protein-coding 53743 D0Tu6 D17Tu6 - - DNA segment, Tubingen 6 unknown 102467295 n-TQttg2 n-Tq12 - 11 C|11 nuclear encoded tRNA glutamine 2 (anticodon TTG) tRNA 13723 Mm.274926 NM_010330 ENSMUSG00000021728 Emb AL022799|Gp70 - 13|13 D2.3 embigin protein-coding 19443 Rb(1.2)18Lub Rb18Lub - - Robertsonian translocation, Chr 1 and 2, Lubeck 18 other 110120405 LOC110120405 - - - VISTA enhancer mm702 biological-region 214301 Mm.63484 NM_153076 ENSMUSG00000038135 Crygn - - 5|5 A3 crystallin, gamma N protein-coding 546837 NM_001104926 Cyp2j7 Cyp2j7-ps - 4|4 C5 cytochrome P450, family 2, subfamily j, polypeptide 7 pseudo 69418 Mm.391004 NR_045825 ENSMUSG00000099747 1700025K24Rik - - 17|17 C RIKEN cDNA 1700025K24 gene ncRNA 68092 Mm.290027 NM_026554 ENSMUSG00000022774 Ncbp2 20kDa|5930413E18Rik|AA536802|AI843301|C79367 - 16|16 B2 nuclear cap binding protein subunit 2 protein-coding 26415 Mm.27970 NM_011950 ENSMUSG00000004864 Mapk13 SAPK4|Serk4 - 17|17 A3.3 mitogen-activated protein kinase 13 protein-coding 100039681 Mm.335517 Zcwpw2 4930430K04Rik - 9|9 F3 zinc finger, CW type with PWWP domain 2 protein-coding 61705 D5Mit326 - - 5 76.45 cM DNA segment, Chr 5, Massachusetts Institute of Technology 326 unknown 22224 Mm.256910 NM_009462 ENSMUSG00000031826 Usp10 2610014N07Rik|UBPO|Uchrp|mKIAA0190 - 8|8 E1 ubiquitin specific peptidase 10 protein-coding 109552 Mm.96211 NM_025618 ENSMUSG00000003161 Sri 2210417O06Rik|2900070H08Rik|Sor - 5 A1|5 3.38 cM sorcin protein-coding 258655 Mm.377618 NM_146661 ENSMUSG00000044487 Olfr1112 MOR264-6 - 2|2 D olfactory receptor 1112 protein-coding 12520 Mm.806 NM_133655 ENSMUSG00000037706 Cd81 Tapa-1|Tapa1|Tspan28 - 7 F5|7 88.1 cM CD81 antigen protein-coding 668914 Rbmx2-ps Gm14081 - 2|2 G1 RNA binding motif protein, X-linked 2, pseudogene pseudo 16731 L1Md-Tf17 - - - L1 repeat, Tf subfamily, member 17 other 99424 AW742503 - - - expressed sequence AW742503 unknown 68979 Mm.294617 NM_133702 ENSMUSG00000018433 Nol11 1500002M01Rik|AU015220|AU019874 - 11|11 E1 nucleolar protein 11 protein-coding 28205 D6Wum13 200H7R - - DNA segment, Chr 6, Washington University School of Medicine 13 unknown 102637595 Gm34364 - - 15|15 predicted gene, 34364 ncRNA 11923 Mm.10695 NM_007501 ENSMUSG00000048015 Neurod4 AI846749|ATH-3|Atoh3|MATH-3|Math3|bHLHa4 - 10 D3|10 77.81 cM neurogenic differentiation 4 protein-coding 102639374 Gm35703 - - 5 C3.1|5 predicted gene, 35703 pseudo 102636750 Gm33736 - - 12|12 predicted gene, 33736 pseudo 73989 Mm.107775 NR_045060 ENSMUSG00000115422 4930452G13Rik - - 14|14 D3 RIKEN cDNA 4930452G13 gene ncRNA 385404 Gm5392 EG385404 - X|X D ribosomal protein L7a pseudogene pseudo 108489 Ms76 MMS76 - - minisatellites detected by probe MMS76 other 102640299 XR_382330 Gm36402 - - 13 A5|13 predicted gene, 36402 ncRNA 105242577 XR_868710 Gm38751 - - 5 G3|5 predicted gene, 38751 ncRNA 107542 Tsve1 Tsve - - variable short tail (Tsv) enhancer 1 protein-coding 56570 14c5Sp6 - - - DNA segment, 14c5Sp6 unknown 102639084 XR_391248 Gm35484 - - 7 B2|7 predicted gene, 35484 ncRNA 19804 NR_030686 ENSMUSG00000096406 Rn5s - - 8|8 E1 5S RNA rRNA 667918 Olfr664 EG667918|MOR34-10P - 7|7 E3 olfactory receptor 664 pseudo 102640716 Gm36717 - - 2|2 predicted gene, 36717 ncRNA 77929 Mm.212290 NM_207633 ENSMUSG00000047694 Yipf6 A430107J06Rik - X|X C3 Yip1 domain family, member 6 protein-coding 118454 Mm.40016 NM_080454 ENSMUSG00000043448 Gjc2 B230382L12Rik|Cx47|Gja12 - 11 B1.3|11 37.05 cM gap junction protein, gamma 2 protein-coding 102637828 XR_390587 Gm12519 - - 4 B3|4 30.61 cM predicted gene 12519 ncRNA 381393 Mm.280614 NM_198655 ENSMUSG00000061525 4921509C19Rik Gm1005 - 2|2 G3 RIKEN cDNA 4921509C19 gene protein-coding 102637246 XR_375316 Gm34112 - - 2 H3|2 predicted gene, 34112 ncRNA 20971 Mm.3815 NM_011521 ENSMUSG00000017009 Sdc4 AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4 - 2 H3|2 85.16 cM syndecan 4 protein-coding 20447 Mm.296453 NM_011372 ENSMUSG00000052544 St6galnac3 Siat7c - 3|3 H3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 244141 Mm.274864 NM_153591 ENSMUSG00000018995 Nars2 AI875199 - 7|7 E1 asparaginyl-tRNA synthetase 2 (mitochondrial)(putative) protein-coding 16325 Mm.2594 NM_010565 ENSMUSG00000025405 Inhbc - - 10 D3|10 74.5 cM inhibin beta-C protein-coding 111948 Iapls3-45 - - - intracisternal A particle, lymphocyte specific, probe 3-45 other 73941 Mm.159096 XR_390567 4930412L05Rik LeXis - 4|4 B2 RIKEN cDNA 4930412L05 gene ncRNA 639653 Mm.475374 NM_001039252 Gm7276 EG639653 - 18 E3|18 predicted gene 7276 unknown 108168528 XM_017318717 LOC108168528 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 382384 Mm.244510 NM_001033473 ENSMUSG00000035963 Odf3l2 Gm1157 - 10|10 C1 outer dense fiber of sperm tails 3-like 2 protein-coding 100312508 Vmn1r-ps62 - - 7 A1|7 7.42 cM vomeronasal 1 receptor, pseudogene 62 pseudo 19628 Rb(9.11)14Tu Rb14Tu - - Robertsonian translocation, Chr 9 and 11, Tubingen 14 other 230558 Mm.197638 NM_146148 ENSMUSG00000035031 C8a - - 4|4 C6 complement component 8, alpha polypeptide protein-coding 66311 Mm.251779 NM_001109747 ENSMUSG00000075266 Cenpw 2610036L11Rik|Cug2 - 10|10 A4 centromere protein W protein-coding 16749 l1Rk8 l(1)-8Rk - - lethal, Chr 1, Roderick 8 unknown 75555 Mm.440432 NM_023781 ENSMUSG00000100937 1700020D05Rik mage-g2 - 19|19 A RIKEN cDNA 1700020D05 gene protein-coding 142682 Mm.103202 NM_080855 ENSMUSG00000061410 Zcchc14 AA792890|BDG29 - 8|8 E1 zinc finger, CCHC domain containing 14 protein-coding 100316803 NR_035415 ENSMUSG00000080586 Mir1187 Mirn1187|mir-1187|mmu-mir-1187 - 5 E1|5 43.0 cM microRNA 1187 ncRNA 26377 Mm.254835 NM_011932 ENSMUSG00000028159 Dapp1 Bam32 - 3|3 G3 dual adaptor for phosphotyrosine and 3-phosphoinositides 1 protein-coding 73922 Mm.233289 NR_045956 ENSMUSG00000085940 4930405D11Rik - - 11|11 D RIKEN cDNA 4930405D11 gene ncRNA 108167448 XR_001778232 Gm45994 - - 7 E2|7 predicted gene, 45994 ncRNA 492855 Sluc21 - - 4 67.01 cM susceptibility to lung cancer 21 unknown 16160 Mm.239707 NM_008352 ENSMUSG00000004296 Il12b Il-12b|Il-12p40|Il12p40|p40 - 11 B1.1|11 25.94 cM interleukin 12b protein-coding 100113398 Mm.273170 NM_001100606 ENSMUSG00000113640 Adat3 A430024H01Rik - 10|10 C1 adenosine deaminase, tRNA-specific 3 protein-coding 668303 Mm.313104 NM_001097621 ENSMUSG00000021294 Kif26a mKIAA1236 - 12|12 F1 kinesin family member 26A protein-coding 104444 Mm.21911 NM_024233 ENSMUSG00000032026 Rexo2 1810038D15Rik|AW107347|Rex2|Sfn|Smfn - 9|9 A5.3 RNA exonuclease 2 protein-coding 22631 Mm.3360 NM_011740 ENSMUSG00000022285 Ywhaz 1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854 - 15|15 B3.1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide protein-coding 105245794 Gm41186 - - 14|14 predicted gene, 41186 ncRNA 100418423 Gm19203 - - 7|7 D3 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene pseudo 108168605 XM_017318811 LOC108168605 - - Y D Y-linked testis-specific protein 1-like protein-coding 99444 BB103613 - - - expressed sequence BB103613 unknown 56717 Mm.21158 NM_020009 ENSMUSG00000028991 Mtor 2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat - 4 E2|4 78.76 cM mechanistic target of rapamycin kinase protein-coding 112180 Wt6q1 - - - body weight, 6 weeks, QTL 1 unknown 100049166 Mm.404560 XR_001785253 Gm16499 Gm43938 - 6|6 B3 predicted gene 16499 unknown 105246486 Gm41771 - - 18|18 predicted gene, 41771 ncRNA 626415 Mm.425517 NM_001039553 ENSMUSG00000096265 4930467E23Rik TSAP - 8|8 A1.3 RIKEN cDNA 4930467E23 gene protein-coding 100418037 Gm18959 - - 7|7 E2 U2 small nuclear RNA auxiliary factor 1-like 4 pseudogene pseudo 20164 Opn1lw Rsvp - X|X opsin 1 (cone pigments), long-wave-sensitive protein-coding 100503784 Gm19893 - - 8 B3.3|8 33.88 cM predicted gene, 19893 pseudo 100035132 Mpvq1 - - - mean platelet volume locus 1 unknown 102636203 Mm.416931 NM_029164 4930519L02Rik - - 3|3 H1 RIKEN cDNA 4930519L02 gene protein-coding 258650 Mm.377613 NM_146656 ENSMUSG00000073110 Olfr444 MOR261-2 - 6|6 B2.1 olfactory receptor 444 protein-coding 100416958 Gm15186 - - X|X F4 transmembrane protein 126A pseudogene pseudo 102637340 Gm34176 - - 1|1 predicted gene, 34176 pseudo 18505 Mm.1371 NM_008781 ENSMUSG00000004872 Pax3 Pax-3|Sp|Splchl2|splotch - 1 C4|1 39.79 cM paired box 3 protein-coding 110602 Kfo1 Kfo-1 - - kidney 40-50 thousand Mol. Wt. protein 1 protein-coding 116749 Drb1 - - - dopamine receptor binding 1 unknown 105244217 XR_866503 Gm39865 - - 2 C3|2 predicted gene, 39865 ncRNA 102633865 XR_374888 Gm31590 - - 2 E4|2 predicted gene, 31590 ncRNA 102632117 Gm30274 - - 14 A3|14 predicted gene, 30274 pseudo 13448 Mm.156 NM_010070 ENSMUSG00000068335 Dok1 AW557123|p62DOK - 6 C3|6 35.94 cM docking protein 1 protein-coding 20501 Mm.9086 NM_009196 ENSMUSG00000032902 Slc16a1 AL022710|Mct1 - 3|3 F2.2 solute carrier family 16 (monocarboxylic acid transporters), member 1 protein-coding 100042719 NR_004842 Gm13509 - - 2|2 C1.1 adaptor protein complex AP-2, mu1 pseudogene pseudo 109608 Esa4 Es-17|Es17 - 9|9 esterase A4 protein-coding 100035458 Vmmt12 - - - vertebral morphology and mechanical traits 12 unknown 70314 Mm.35467 NM_030566 ENSMUSG00000030727 Rabep2 2610011A08Rik|AI462746|Fra - 7|7 F3 rabaptin, RAB GTPase binding effector protein 2 protein-coding 66231 Mm.295875 NM_025435 ENSMUSG00000053453 Thoc7 Nif3l1bp1 - 14|14 A1 THO complex 7 protein-coding 626887 Gm11993 - - 11|11 A1 polymerase (RNA) II (DNA directed) polypeptide C pseudogene pseudo 62550 D11Mit208 - - 11 36.21 cM DNA segment, Chr 11, Massachusetts Institute of Technology 208 unknown 102631929 Gm30137 - - 9|9 predicted gene, 30137 pseudo 75462 Mm.46129 NM_029296 ENSMUSG00000047150 1700001C19Rik - - 17|17 C RIKEN cDNA 1700001C19 gene protein-coding 258585 Mm.223112 NM_146592 ENSMUSG00000075175 Olfr1086 MOR179-2 - 2|2 D olfactory receptor 1086 protein-coding 51936 D3Ertd740e - - - DNA segment, Chr 3, ERATO Doi 740, expressed unknown 100041227 Gm3216 - - 14 C1|14 predicted gene 3216 pseudo 101055965 Gm28092 - - Y|Y predicted gene 28092 protein-coding 622921 Gm6369 EG622921 - 3|3 A1 predicted gene 6369 pseudo 102634504 XR_383901 Gm32070 - - 15 B2|15 predicted gene, 32070 ncRNA 74916 Mm.444721 NR_015541 ENSMUSG00000085800 1700066O22Rik 4930500F21Rik|4930515O13Rik|4930542C11Rik - 18|18 D3 RIKEN cDNA 1700066O22 gene ncRNA 22702 Mm.285848 NM_009556 ENSMUSG00000051176 Zfp42 Rex-1|Rex1|Zfp-42 - 8 A4|8 23.89 cM zinc finger protein 42 protein-coding 100043712 Gm9844 - - 7|7 A3 thymosin, beta 10 pseudogene pseudo 224093 Mm.28244 NM_177632 ENSMUSG00000046546 Fam43a Tuf1 - 16|16 B2 family with sequence similarity 43, member A protein-coding 73453 Mm.75101 NM_183097 ENSMUSG00000046408 1700067K01Rik - - 8|8 C2 RIKEN cDNA 1700067K01 gene protein-coding 100862465 LOC100862465 - - - THAP domain-containing protein 1 pseudogene pseudo 110836 Kras2-rs2 Kras-3|Kras3 - - Kirsten rat sarcoma oncogene 2, related sequence 2 protein-coding 100035145 Scpro5 - - - Stem cell proliferation 5 unknown 109279846 LOC109279846 Mm4 - - VISTA enhancer mm4 biological-region 102643127 XR_880159 Gm38659 - - 11 D|11 predicted gene, 38659 ncRNA 105245556 XR_873663 Gm41000 - - 13 C1|13 predicted gene, 41000 ncRNA 100126078 Mtgq1 Bwnd4wk1|Bwnd5wk1 - - multiple trait growth QTL 1 unknown 52453 D14Ertd24e - - 14 59.27 cM DNA segment, Chr 14, ERATO Doi 24, expressed unknown 103936 Frl - - - furloss unknown 105243914 XR_865396 Gm39633 - - 1 B|1 predicted gene, 39633 ncRNA 71296 Mm.86664 NR_033641 ENSMUSG00000031736 Crnde 4933436C20Rik - 8|8 C5 colorectal neoplasia differentially expressed (non-protein coding) ncRNA 102632378 XR_383626 Gm30467 - - 14 D3|14 predicted gene, 30467 ncRNA 100502879 Gm19427 - - 9|9 40.08 cM 60S ribosomal protein L38-like pseudo 27890 D16Ium75 - - 16 51.74 cM DNA segment, Chr 16, Indiana University Medical 75 unknown 666182 Mm.371841 XR_387291 ENSMUSG00000100009 Gm7967 EG666182 - 1|1 D predicted gene 7967 unknown 668452 Gm15602 EG668452 - 3|3 F2.2 predicted gene 15602 pseudo 404521 Olfr1482-ps1 GA_x5J8B7W6KF8-5488050-5488655|GA_x6K02T2RE5P-3895810-3895205|MOR202-48_p - 19|19 A olfactory receptor 1482, pseudogene 1 pseudo 102637139 XR_387864 Gm34025 - - 8 C3|8 predicted gene, 34025 ncRNA 102634230 Gm31863 - - 1|1 predicted gene, 31863 ncRNA 108169022 LOC108169022 - - 5 A1 60S ribosomal protein L27 pseudogene pseudo 18607 Mm.10504 NM_011062 ENSMUSG00000024122 Pdpk1 Pdk1 - 17|17 A3.3 3-phosphoinositide dependent protein kinase 1 protein-coding 52299 D9Ertd338e - - 9 35.23 cM DNA segment, Chr 9, ERATO Doi 338, expressed unknown 78455 Mm.272047 NM_198298 ENSMUSG00000020721 Helz 3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC - 11|11 E1 helicase with zinc finger domain protein-coding 100041201 Gm3198 - - 7|7 C predicted gene 3198 pseudo 100126779 Mm.471589 NM_001177582 ENSMUSG00000096697 Esp23 Gm20581 - 17 B1|17 19.16 cM exocrine gland secreted peptide 23 protein-coding 102637790 XR_866800 Gm34513 - - 2 G1|2 predicted gene, 34513 ncRNA 102633074 Gm30989 - - 10|10 predicted gene, 30989 ncRNA 235469 Mm.242791 NM_146224 ENSMUSG00000038535 Zfp280d A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d - 9|9 D zinc finger protein 280D protein-coding 53009 K20T7 - - - DNA segment, K20T7 unknown 57266 Mm.30211 NM_019568 ENSMUSG00000021508 Cxcl14 1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine - 13|13 B1 chemokine (C-X-C motif) ligand 14 protein-coding 110120437 LOC110120437 - - - VISTA enhancer mm1476 biological-region 100503467 Mm.482595 AA667203 - - 18 E1|18 37.57 cM expressed sequence AA667203 unknown 67000 Mm.69279 NM_025896 ENSMUSG00000038883 Prl3a1 1600016E11Rik|Ghd9|PLP-H|PLP-I|Plpi|Prlpi - 13|13 A3.1 prolactin family 3, subfamily a, member 1 protein-coding 62317 D2Mit147 - - 2 94.85 cM DNA segment, Chr 2, Massachusetts Institute of Technology 147 unknown 435565 Mm.261140 NM_001013828 Iigp1b - - 18|18 D3 interferon inducible GTPase 1B protein-coding 108167959 Gm46317 - - 12 A3|12 40S ribosomal protein S15a pseudogene pseudo 16532 Mm.289679 NM_008432 ENSMUSG00000031576 Kcnu1 Kcnma3|Slo3|mSlo3 - 8|8 A2 potassium channel, subfamily U, member 1 protein-coding 100034825 Egrm3 - - 7 43.46 cM early growth rate, maternal effect 3 unknown 100268 Mm.442258 AU015268 - - - expressed sequence AU015268 protein-coding 102636711 Gm33707 - - 3 D|3 predicted gene, 33707 pseudo 24064 Mm.89982 NM_011897 ENSMUSG00000022114 Spry2 sprouty2 - 14 E2.3|14 56.16 cM sprouty RTK signaling antagonist 2 protein-coding 105244157 XR_879819 Gm39818 - - 11 B1.2|11 predicted gene, 39818 ncRNA 70561 Mm.28129 NM_172597 ENSMUSG00000021830 Txndc16 5730420B22Rik|C77647 - 14|14 C1 thioredoxin domain containing 16 protein-coding 75039 Mm.444693 NR_145521 Nudt12os 4930505H01Rik - 17|17 D nudix (nucleoside diphosphate linked moiety X)-type motif 12, opposite strand ncRNA 13197 Mm.72235 NM_007836 ENSMUSG00000036390 Gadd45a AA545191|Ddit1|GADD45 - 6|6 C1 growth arrest and DNA-damage-inducible 45 alpha protein-coding 244723 Mm.293552 NM_173777 ENSMUSG00000032172 Olfm2 A030009A06Rik - 9|9 A3 olfactomedin 2 protein-coding 108168788 XR_001783449 Gm46760 - - 2 F1|2 predicted gene, 46760 ncRNA 100101414 Mpaps1 - - - microphthalmia anophthalmia susceptibility 1 unknown 606536 Gm12632 Ppia-ps4_804.1 - 4|4 C5 peptidylprolyl isomerase A (Ppia) pseudogene 4_804.1 pseudo 27700 D1Dau14 - - - DNA segment, Chr 1, DA Underhill 14 unknown 78210 4930549L11Rik - - 5|5 RIKEN cDNA 4930549L11 gene protein-coding 665845 Mm.6660 NR_152162 Gm7819 100039323 - 4 A5|4 family with sequence similarity 205 pseudogene pseudo 12815 Mm.20230 NM_009926 ENSMUSG00000024330 Col11a2 - - 17 B1|17 17.98 cM collagen, type XI, alpha 2 protein-coding 100416807 Gm9772 - - 17|17 A3.3 zinc finger protein 758 pseudogene pseudo 97696 C77673 - - - expressed sequence C77673 unknown 75710 Mm.27660 NM_029397 ENSMUSG00000089824 Rbm12 5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765 - 2|2 H1 RNA binding motif protein 12 protein-coding 108167 Actg-ps2 - - - actin, gamma, pseudogene 2 pseudo 258757 Mm.223189 NM_146762 ENSMUSG00000053287 Olfr1013 MOR213-2 - 2|2 D olfactory receptor 1013 protein-coding 100038854 Mm.383561 NM_001001332 ENSMUSG00000079594 BC117090 Gm1975 - 16|16 B3 cDNA sequence BC1179090 protein-coding 67576 Mm.435324 NR_027966 4930429B21Rik - - 3|3 A3 RIKEN cDNA 4930429B21 gene ncRNA 11440 Mm.283137 NM_021369 ENSMUSG00000031491 Chrna6 Acra6|Nica6 - 8|8 A2 cholinergic receptor, nicotinic, alpha polypeptide 6 protein-coding 102632821 Mm.392783 XR_374766 ENSMUSG00000086495 LOC102632821 - - 2 E1 uncharacterized LOC102632821 protein-coding 27455 38T - - - DNA segment, 38T unknown 28191 D6Wum4 52R - 6 63.44 cM DNA segment, Chr 6, Washington University School of Medicine 4 unknown 387345 Mm.377907 NM_207018 ENSMUSG00000056926 Tas2r113 T2R13|Tas2r13|mGR13|mt2r58 - 6 G1|6 64.03 cM taste receptor, type 2, member 113 protein-coding 71973 Mm.29148 NM_028030 ENSMUSG00000032387 Rbpms2 2400008B06Rik|AI316523 - 9|9 C RNA binding protein with multiple splicing 2 protein-coding 109569 Rn7s8 Rn7s-8 - - 7S RNA 8 scRNA 102635423 LOC102635423 - - 16 C1.1 cyclin-dependent kinases regulatory subunit 2 pseudogene pseudo 105242818 XR_869587 Gm38926 - - 6 G3|6 predicted gene, 38926 ncRNA 100041048 Gm12993 - - 4|4 D1 predicted gene 12993 pseudo 436421 Gm5769 EG436421 - 16|16 C1.1 chromatin modifying protein 5 pseudogene pseudo 319998 Mm.44401 NM_177056 ENSMUSG00000051703 Tmem198 A230078I05Rik|Tmem198-1|Tmem198a - 1|1 C4 transmembrane protein 198 protein-coding 69574 Mm.28108 NM_181588 ENSMUSG00000022235 Cmbl 2310016A09Rik - 15|15 B2 carboxymethylenebutenolidase-like (Pseudomonas) protein-coding 112187 Afpq5 - - - abdominal fat percent QTL 5 unknown 223648 Mm.17610 NM_146059 ENSMUSG00000098176 Ccdc166 2410075B13Rik - 15|15 D3 coiled-coil domain containing 166 protein-coding 108169059 LOC108169059 - - 5 E5 high mobility group protein B1 pseudogene pseudo 22019 Mm.401675 NM_009418 ENSMUSG00000041763 Tpp2 TPP-2|TppII - 1 C1.1|1 23.5 cM tripeptidyl peptidase II protein-coding 100416652 Gm18170 - - X|X A1.1 predicted gene, 18170 pseudo 56735 Mm.358677 NM_019956 ENSMUSG00000051879 Krt71 AA589543|Ca|Cal4|Cu|Krt2-6g|mK6irs|mK6irs1 - 15 F2|15 57.0 cM keratin 71 protein-coding 435549 Rpl7a-ps6 EG435549|Gm5685 - 18|18 A1 ribosomal protein L7A, pseudogene 6 pseudo 111644 Ms12 MMS12 - - minisatellites detected by probe MMS12 other 225288 Mm.329322 NM_175276 ENSMUSG00000034295 Fhod3 A930009H06Rik|FHOS2|mKIAA1695 - 18|18 A2 formin homology 2 domain containing 3 protein-coding 100035258 Wght1 - - - weight 1 unknown 319303 Mm.447159 A730052K04Rik - - 8|8 RIKEN cDNA A730052K04 gene protein-coding 100035343 Bod3 BOD6.1 - 6 73.86 cM bone length and organs 3 unknown 81015 Mm.160380 NM_030740 ENSMUSG00000091874 Vmn1r56 V1rd3|V3R3 - 7|7 A1 vomeronasal 1 receptor 56 protein-coding 102465578 NR_105923 ENSMUSG00000098663 Mir6958 Gm27581|mmu-mir-6958 - 15|15 E3 microRNA 6958 ncRNA 62254 D18Mit37 - - 18 22.63 cM DNA segment, Chr 18, Massachusetts Institute of Technology 37 unknown 21249 T(7;11)65H T65H - - reciprocal translocation, Chr 7 and 11, Harwell 65 other 52466 Mm.131618 NM_026740 ENSMUSG00000020829 Slc46a1 1110002C08Rik|D11Ertd18e|HCP1|Pcft - 11 B5|11 46.74 cM solute carrier family 46, member 1 protein-coding 24001 Mm.137134 NM_011878 ENSMUSG00000023800 Tiam2 3000002F19Rik|STEF|mKIAA2016 - 17 A1|17 1.99 cM T cell lymphoma invasion and metastasis 2 protein-coding 15122 Mm.459653 NM_008218 ENSMUSG00000069919 Hba-a1 Hba|Hba1|Hbat1 - 11 A4|11 18.86 cM hemoglobin alpha, adult chain 1 protein-coding 113842 Insq8 - - 6 77.7 cM insulin QTL 8 unknown 19594 Rb(6.15)1Ald Rb1Ald - - Robertsonian translocation, Chr 6 and 15, Leonard 1 other 22053 n-THgtg2 Trnah|Trnah1|n-Th2 - 3|3 F2.1 nuclear encoded tRNA histidine 2 (anticodon GTG) tRNA 668119 NM_001177432 Gm13691 - - 2|2 D CWC22 spliceosome-associated protein homolog pseudogene pseudo 102632253 XR_386780 Gm30381 - - 19 D2|19 predicted gene, 30381 ncRNA 105243120 Gm39131 - - 8|8 predicted gene, 39131 ncRNA 100534277 Gm21010 - - 14|14 C1 tubulin, alpha 1A pseudogene pseudo 102634815 XR_373404 Gm32311 - - 1 C1.1|1 predicted gene, 32311 ncRNA 12981 Mm.4922 NM_009969 ENSMUSG00000018916 Csf2 CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM - 11 B1.3|11 32.13 cM colony stimulating factor 2 (granulocyte-macrophage) protein-coding 20638 Mm.88216 NM_009225 ENSMUSG00000027404 Snrpb AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B - 2 F1|2 63.19 cM small nuclear ribonucleoprotein B protein-coding 102465760 NR_106112 ENSMUSG00000098906 Mir7652 Gm27932|mmu-mir-7652 - 11|11 B1.3 microRNA 7652 ncRNA 24082 Mm.46270 NM_025293 ENSMUSG00000042549 Map2k3os F3-1|Gm16516|Gtlf3a - 11|11 B2 mitogen-activated protein kinase kinase 3, opposite strand ncRNA 328250 Mm.315205 NM_001033400 ENSMUSG00000071909 Nutm2 Fam22|Gm806 - 13|13 A5 NUT family member 2 protein-coding 665936 XM_017318661 Gm7855 EG665936 - X|X E3 predicted gene 7855 protein-coding 109530 Mhsvr1 - - - malignant histiocytosis sarcoma virus resistance 1 unknown 100417172 Gm18437 - - X|X A4 crumbs homolog 1 pseudogene pseudo 102639962 Mm.290110 Gm36151 - - 5|5 predicted gene, 36151 ncRNA 67241 Mm.173953 NM_025695 ENSMUSG00000020608 Smc6 2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103 - 12|12 A1.1 structural maintenance of chromosomes 6 protein-coding 102634349 Gm38463 - - 14|14 predicted gene, 38463 ncRNA 619909 Gm6112 EG619909 - 7|7 D3 high mobility group box 1-like pseudogene pseudo 667256 Mm.46855 NM_001201358 ENSMUSG00000094577 4921511M17Rik - - X|X F3 RIKEN cDNA 4921511M17 gene protein-coding 639105 XM_011246069 Gm7260 - - 16|16 B3 predicted gene 7260 protein-coding 17851 mut1 mut-1 - - mutator 1 unknown 75023 4930477J04Rik - - 18|18 RIKEN cDNA 4930477J04 gene protein-coding 60870 D6Mit68 - - 6 44.74 cM DNA segment, Chr 6, Massachusetts Institute of Technology 68 unknown 105245387 Gm40851 - - 12|12 predicted gene, 40851 ncRNA 102636539 XR_377296 Gm33576 - - 6 A1|6 predicted gene, 33576 ncRNA 102636759 XR_377923 Gm33741 - - 6 D3|6 predicted gene, 33741 ncRNA 100418393 Gm19181 - - 10|10 D1 PRP38 pre-mRNA processing factor 38 domain containing A pseudogene pseudo 108167926 XR_001780333 Gm46295 - - 11 D|11 predicted gene, 46295 ncRNA 54426 Mm.27369 NM_019447 ENSMUSG00000029102 Hgfac HGFA - 5|5 B2 hepatocyte growth factor activator protein-coding 19015 Mm.328914 NM_011145 ENSMUSG00000002250 Ppard NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d - 17 A3.3|17 14.64 cM peroxisome proliferator activator receptor delta protein-coding 258972 Mm.223363 NM_146970 ENSMUSG00000075088 Olfr1239 MOR231-3 - 2|2 E1 olfactory receptor 1239 protein-coding 105661729 Gm45925 - - 12 A1.1|12 NLR family, pyrin domain containing 5 pseudogene pseudo 106699571 Cd8_ciii E8(I)|E8I - - Cd8 alpha DNase I hypersensitive cluster CIII biological-region 12913 Mm.12407 NM_013497 ENSMUSG00000028466 Creb3 AU044960|AW538053|C80076|LZIP|LZIP-1|LZIP-2|Luman - 4 A5|4 23.05 cM cAMP responsive element binding protein 3 protein-coding 105283 Mm.11567 E030046B03Rik AU019878 - - RIKEN cDNA E030046B03 gene ncRNA 171260 Mm.377214 NM_134226 ENSMUSG00000095629 Vmn1r89 V1RE8|V1rj2 - 7|7 A1 vomeronasal 1 receptor 89 protein-coding 102639075 Gm26907 - - 9|9 predicted gene, 26907 ncRNA 102640250 XR_876366 LOC102640250 - - 17 A1 uncharacterized LOC102640250 ncRNA 61672 D6Mit296 - - 6 2.25 cM DNA segment, Chr 6, Massachusetts Institute of Technology 296 unknown 100534295 Gm21018 - - 17|17 E5 pyruvate kinase, muscle pseudogene pseudo 574401 AB193402 - - - expressed sequence AB193402 unknown 102640800 Gm36782 - - Y|Y predicted gene, 36782 protein-coding 432763 Mm.315457 NM_001030296 ENSMUSG00000034686 Prr7 XM_484263 - 13|13 B1 proline rich 7 (synaptic) protein-coding 22436 Mm.11223 NM_011723 ENSMUSG00000024066 Xdh XO|Xor|Xox-1|Xox1 - 17 E2|17 45.25 cM xanthine dehydrogenase protein-coding 105247021 XR_880750 Gm42203 - - 3 A3|3 predicted gene, 42203 ncRNA 100040561 Selenot-ps Gm15359 - 8|8 A1.3 selenoprotein T, pseudogene pseudo 432825 Mm.327147 NM_001024706 ENSMUSG00000095024 Gm5458 EG432825 - 14 A3|14 predicted gene 5458 protein-coding 21413 Mm.4269 NM_013685 ENSMUSG00000053477 Tcf4 5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19 - 18|18 E2 transcription factor 4 protein-coding 100416835 Gm18287 - - 11|11 A5 olfactory receptor 1423 pseudogene pseudo 382985 Mm.24738 NM_199476 ENSMUSG00000022292 Rrm2b p53R2 - 15|15 B3.1 ribonucleotide reductase M2 B (TP53 inducible) protein-coding 100312522 Vmn1r-ps92 Gm11283 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 92 pseudo 360075 D17Jcs80 - - - DNA segment, Chr 17, John C. Schimenti 80 unknown 777689 Ighv6-1 - - 12|12 F1 immunoglobulin heavy variable V6-1 pseudo 105243991 XR_865678 Gm37294 - - 1 H1|1 predicted gene, 37294 ncRNA 237523 Mm.391418 NM_001081432 ENSMUSG00000035916 Ptprq - - 10 D1|10 55.97 cM protein tyrosine phosphatase, receptor type, Q protein-coding 668745 Oaz2-ps EG668745|Gm9329 - 3|3 G3 ornithine decarboxylase antizyme 2, pseudogene pseudo 102636652 Gm16261 - - 14 D1|14 31.62 cM predicted gene 16261 pseudo 102635595 XM_006521645 Gm32886 - - 15 E1|15 predicted gene, 32886 protein-coding 102465983 NR_105990 ENSMUSG00000098580 Mir7023 Gm27912|mmu-mir-7023 - 4|4 E2 microRNA 7023 ncRNA 108232 Ube2i-ps1 Ubce9-ps1|ubc9-[y]1 - - ubiquitin-conjugating enzyme E2I, pseudogene 1 pseudo 69420 Mm.396193 NR_045488 ENSMUSG00000099360 1700022H16Rik - - 12|12 A1.1 RIKEN cDNA 1700022H16 gene ncRNA 105245485 XR_873345 Gm40933 - - 13 A5|13 predicted gene, 40933 ncRNA 100042770 Gm4022 - - 14 C3|14 predicted gene 4022 protein-coding 74446 Mm.85000 NM_028946 ENSMUSG00000050150 Slc9b1 1700094G20Rik|4933424B12Rik|4933425K02Rik|Nhedc1|mtsNHE - 3|3 G3 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 protein-coding 434278 Mm.334407 B020031H02Rik - - 8|8 A1.1 RIKEN cDNA B020031H02 gene protein-coding 99518 AA589472 - - - expressed sequence AA589472 protein-coding 319511 Mm.258279 A730077B16Rik - - 9|9 RIKEN cDNA A730077B16 gene protein-coding 71264 Mm.399572 NR_045657 ENSMUSG00000114980 4933432I03Rik - - 14|14 E2.3 RIKEN cDNA 4933432I03 gene ncRNA 665280 Gm7566 EG665280 - 15|15 D1 ribosomal protein L19 pseudogene pseudo 110469 Tcra-V8.3 - - - T cell receptor alpha, variable 8.3 other 108168865 XR_001783819 Gm46800 - - 3 B|3 predicted gene, 46800 ncRNA 102635160 XR_373663 Gm32569 - - 1 H2.2|1 predicted gene, 32569 ncRNA 100036156 Gpdc1 - - 3 56.07 cM G protein deficiency-induced colitis 1 unknown 51981 D5Ggc1e - - - DNA segment, Chr 5, G. Consalez 1, expressed unknown 102633911 Mm.390331 XR_381065 Gm12022 - - 11 A3.1|11 10.71 cM predicted gene 12022 ncRNA 78330 Mm.28349 NM_030087 ENSMUSG00000024038 Ndufv3 1500032D16Rik - 17|17 B1 NADH dehydrogenase (ubiquinone) flavoprotein 3 protein-coding 52856 Mm.219658 NM_028422 ENSMUSG00000039069 Mtg2 1810011P19Rik|2900056P18Rik|D2Bwg0647e|Gtpbp5 - 2 H4|2 102.59 cM mitochondrial ribosome associated GTPase 2 protein-coding 105245914 XR_875138 Gm41294 - - 15 B3.1|15 predicted gene, 41294 ncRNA 492882 Cd4ts1 - - 3 27.32 cM CD4 T cell subset 1 unknown 14026 Mm.238841 NM_007965 ENSMUSG00000021262 Evl AI528774|b2b2600Clo - 12|12 F1 Ena-vasodilator stimulated phosphoprotein protein-coding 100035254 Sdtq7 L9.1 - - skull development traits QTL 7 unknown 108168272 LOC108168272 - - 16 B3 60S ribosomal protein L35a pseudogene pseudo 140762 Mm.442028 C87926 - - - cDNA sequence, C87926 protein-coding 71709 Mm.86439 NM_027875 ENSMUSG00000032714 Syde1 1200008N06Rik|BB043000|mSYD1A - 10|10 C1 synapse defective 1, Rho GTPase, homolog 1 (C. elegans) protein-coding 62622 D13Mit202 - - 13 47.43 cM DNA segment, Chr 13, Massachusetts Institute of Technology 202 unknown 360045 D17Brg6 - - - DNA segment, Chr 17, David E. Bergstrom 6 unknown 17217 Mm.1500 NM_008565 ENSMUSG00000022673 Mcm4 19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21 - 16 A2|16 10.09 cM minichromosome maintenance complex component 4 protein-coding 68684 Mm.30963 1110035D15Rik - - 7|7 RIKEN cDNA 1110035D15 gene protein-coding 622070 Mm.486406 NR_040749 ENSMUSG00000087175 Gm15133 - - 7|7 E3 predicted gene 15133 ncRNA 61209 D1Mit171 - - 1 15.4 cM DNA segment, Chr 1, Massachusetts Institute of Technology 171 unknown 100035245 Rafaril - - - Rafar interacting locus unknown 16279 In(3)55Rk-p In(3)55Rk|In55Rk - - inversion, Chr 3, Roderick 55, proximal other 27653 D1Dau9 - - - DNA segment, Chr 1, DA Underhill 9 unknown 102637049 Gm38493 - - 12|12 predicted gene, 38493 protein-coding 52892 Mm.129731 NM_001040026 ENSMUSG00000069844 Sco1 2610001C07Rik|D11Bwg1310e - 11 B3|11 40.59 cM SCO1 cytochrome c oxidase assembly protein protein-coding 62297 D19Mit74 - - 19 42.2 cM DNA segment, Chr 19, Massachusetts Institute of Technology 74 unknown 108167704 XR_001779333 LOC108167704 - - 1 E2.3 uncharacterized LOC108167704 ncRNA 105244739 Mm.403955 XR_868396 Gm15866 - - 5 B3|5 23.78 cM predicted gene 15866 ncRNA 102631596 Gm29893 - - 1|1 predicted gene, 29893 ncRNA 207474 Mm.271572 NM_175429 ENSMUSG00000041633 Kctd12b 9530071H11Rik|B430319H24Rik - X|X F3 potassium channel tetramerisation domain containing 12b protein-coding 108449890 LOC108449890 - - - Pea15a pseudogene pseudo 99572 AI256698 - - - expressed sequence AI256698 unknown 74093 Mm.410871 0610033M10Rik - - 6|6 RIKEN cDNA 0610033M10 gene ncRNA 100039535 Mm.440070 Gm2296 - - 9 B|9 ubiquitin-conjugating enzyme E2S pseudogene pseudo 53900 Naip3-ps3 Birc1c-ps3 - - NLR family, apoptosis inhibitory protein 3, pseudogene 3 pseudo 53100 59K2-T7 - - - DNA segment, 59K2-T7 unknown 317717 Mm.259164 NM_133704 ENSMUSG00000034473 Sec22a 1810005C06Rik|Sec22l2 - 16|16 B3 SEC22 homolog A, vesicle trafficking protein protein-coding 75160 Mm.183472 XR_384312 4930543I03Rik - - 15|15 E2 RIKEN cDNA 4930543I03 gene ncRNA 100043861 Mm.66911 NM_001099918 ENSMUSG00000079299 Klrb1 4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g - 6 F3|6 63.08 cM killer cell lectin-like receptor subfamily B member 1 protein-coding 108167336 XR_877130 Gm45947 - - 18 D3|18 predicted gene, 45947 ncRNA 100036045 Sox10m3 Agln2|Agln3 - - Sox10Dom modifier 3 unknown 111993 Bfq1 - - - body fat QTL 1 unknown 72893 Mm.233565 NR_152108 2900040C04Rik - - 14|14 D3 RIKEN cDNA 2900040C04 gene ncRNA 666490 Gm8131 EG666490 - 9|9 E1 5'-nucleotidase domain containing 2 pseudogene pseudo 21770 Mm.295009 NM_009358 ENSMUSG00000059409 Ppp2r5d B'delta|TEG-271|Tex271 - 17 22.9 cM|17 C protein phosphatase 2, regulatory subunit B', delta protein-coding 216157 Mm.29442 NM_001003949 ENSMUSG00000013858 Tmem259 AC087114.7gm2|ORF61|R32184_3|mFLJ00277 - 10|10 C1 transmembrane protein 259 protein-coding 100124688 Trbv23 Tcrb-V20|VB20 - 6 19.31 cM|6 B1 T cell receptor beta, variable V23 other 97806 Mm.394036 C79296 - - - expressed sequence C79296 protein-coding 110153 XR_374337 Vis1 Gm27276|His-1|His1 - 2 B|2 viral integration site 1 protein-coding 105246883 XR_880126 Gm42088 - - 11 C|11 predicted gene, 42088 ncRNA 102635418 XR_383914 Gm32764 - - 15 B3.1|15 predicted gene, 32764 ncRNA 100417962 Gm17052 - - 12|12 F1 WD repeat and HMG-box DNA binding protein 1 pseudogene pseudo 22779 Mm.106343 NM_011770 ENSMUSG00000025997 Ikzf2 A730095J18Rik|Helios|Zfpn1a2|Znfn1a2 - 1|1 C3 IKAROS family zinc finger 2 protein-coding 105244704 Mm.2832 XR_868236 Gm40263 Gm43325 - 5 A1|5 predicted gene, 40263 ncRNA 100416517 Gm18139 - - 17|17 D predicted gene, 18139 pseudo 209517 Mm.377232 NM_001010827 ENSMUSG00000095171 Taar7b Gm698|taR-7b - 10|10 A4 trace amine-associated receptor 7B protein-coding 100040589 Gm10242 - - 6|6 B2.3 predicted gene 10242 pseudo 666786 Gm8288 EG666786 - 13|13 C1 high mobility group box 2 pseudogene pseudo 66605 Mm.72646 NM_001081246 ENSMUSG00000056912 1700017N19Rik - - 10|10 D1 RIKEN cDNA 1700017N19 gene protein-coding 239099 Mm.280994 NM_183174 ENSMUSG00000057156 Homez mKIAA1443 - 14|14 C2 homeodomain leucine zipper-encoding gene protein-coding 492835 Bmd6 - - 2 88.99 cM bone mineral density 6 unknown 16599 Mm.392759 NM_008453 ENSMUSG00000029178 Klf3 9930027G08Rik|AL024007|Bklf|Tef-2 - 5|5 C3.1 Kruppel-like factor 3 (basic) protein-coding 105245382 LOC105245382 - - 12 A1.2 zinc finger protein 431-like pseudo 105243409 XR_870747 Gm39339 - - 9 A5.3|9 predicted gene, 39339 ncRNA 22031 Mm.27431 NM_011632 ENSMUSG00000021277 Traf3 AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn - 12 F1|12 60.94 cM TNF receptor-associated factor 3 protein-coding 100035435 Dbsq4 - - - diabetes susceptibility QTL 4 unknown 100044509 Mm.439193 NM_001195258 ENSMUSG00000089736 Tgfbr3l Gm14378 - 8|8 A1.1 transforming growth factor, beta receptor III-like protein-coding 100043142 Gm4257 - - 12|12 A3 phosphatidylethanolamine binding protein 2 pseudogene pseudo 171171 Mm.442448 NM_133500 ENSMUSG00000035513 Ntng2 2610016D08Rik|Lmnt2 - 2 B|2 19.57 cM netrin G2 protein-coding 117078 Cpfd2 Cpfd-2q - - cerebellum pattern fissures, declival 2 unknown 51862 D2Bir27e - - - DNA segment, Chr 2, Birkenmeier 27, expressed unknown 108168102 XR_001781007 Gm46431 - - 13 C1|13 predicted gene, 46431 ncRNA 635497 Gm7159 EG635497 - 19 A|19 ribosomal protein L13 pseudogene pseudo 71203 Mm.158615 NM_027720 4933434M16Rik 4930468F18Rik - 11|11 E2 RIKEN cDNA 4933434M16 gene unknown 66111 Mm.27606 NM_025360 ENSMUSG00000032353 Tmed3 1200002G13Rik|AW546672|P24b - 9|9 E3.1 transmembrane p24 trafficking protein 3 protein-coding 13464 Dp(18Hc)1H - - - duplication, Chr 18 heterochromatin, Harwell 1 other 103953 Rn7sX Rn7s-X - - 7S RNA-X scRNA 628272 Igkv1-108 EG628272|Gm6861 - 6|6 C1 immunoglobulin kappa variable 1-108 pseudo 665981 Gm7876 - - 14 A1|14 predicted gene 7876 protein-coding 69173 Mm.439729 1810037O21Rik - - - RIKEN cDNA 1810037O21 gene protein-coding 11801 Mm.6676 NM_009690 ENSMUSG00000015854 Cd5l 1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM - 3|3 F1 CD5 antigen-like protein-coding 232878 Mm.40706 NM_001001447 ENSMUSG00000054715 Zscan22 AW227621|D530006B18Rik|Hkr2 - 7|7 A1 zinc finger and SCAN domain containing 22 protein-coding 105244832 XR_001785227 Gm40368 - - 6 B2.3|6 predicted gene, 40368 protein-coding 16994 Mm.1715 NM_008518 ENSMUSG00000024399 Ltb AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33 - 17 B1|17 18.59 cM lymphotoxin B protein-coding 228576 Mm.133036 NM_145532 ENSMUSG00000027377 Mall BC012256|BENE - 2|2 F1 mal, T cell differentiation protein-like protein-coding 102634287 Mm.417221 XR_386329 Gm31908 - - 18 E2|18 predicted gene, 31908 ncRNA 17975 Mm.154378 NM_010880 ENSMUSG00000026234 Ncl B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl - 1 C5|1 43.94 cM nucleolin protein-coding 102633901 XR_380249 Gm31616 - - 10 B1|10 predicted gene, 31616 ncRNA 100316827 NR_035528 ENSMUSG00000076455 Mir767 mmu-mir-767 - X A7.3|X 37.27 cM microRNA 767 ncRNA 105242666 XR_869121 Gm38819 - - 6 B3|6 predicted gene, 38819 ncRNA 71967 Mm.379207 NM_028025 ENSMUSG00000046942 Mageb16 2410003J06Rik - X B|X melanoma antigen family B, 16 protein-coding 110624 H2-T19 H-2T19 - - histocompatibility 2, T region locus 19 protein-coding 105247174 Gm42319 - - 4|4 predicted gene, 42319 ncRNA 105244296 Gm39935 - - 2|2 predicted gene, 39935 ncRNA 545115 Apol10c-ps Apol10c|EG545115 - 15|15 E1 apolipoprotein L 10C, pseudogene pseudo 105242678 Mm.404395 Gm38829 - - 6|6 predicted gene, 38829 ncRNA 100416528 Gm18147 - - 14|14 D3 ribosomal protein L17 pseudogene pseudo 258950 Mm.223345 NM_146948 ENSMUSG00000111869 Olfr342 MOR136-4 - 2|2 B olfactory receptor 342 protein-coding 78525 C330024E10Rik - - 18|18 RIKEN cDNA C330024E10 gene protein-coding 328156 Mm.441687 C230037L09 - - 12|12 F1 uncharacterized protein C230037L09 protein-coding 66885 Mm.334274 NM_025826 ENSMUSG00000030861 Acadsb 1300003O09Rik|2-MEBCAD|BB066609|SBCAD - 7|7 F3 acyl-Coenzyme A dehydrogenase, short/branched chain protein-coding 20356 Mm.260374 NM_009154 ENSMUSG00000022231 Sema5a 5930434A13|9130201M22Rik|AI464145|Semaf|semF - 15 B3.1|15 13.02 cM sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A protein-coding 76574 Mm.331842 NM_029662 ENSMUSG00000028655 Mfsd2a 1700018O18Rik|Mfsd2|NLS1 - 4|4 D2.2 major facilitator superfamily domain containing 2A protein-coding 102639447 XR_391927 ENSMUSG00000099463 Gm29081 - - Y B|Y predicted gene 29081 ncRNA 108167476 XM_017312465 Gm46008 - - 7 A3|7 predicted gene, 46008 protein-coding 105246901 XR_880386 Gm42101 - - X A2|X predicted gene, 42101 ncRNA 100041677 Mm.327194 NM_001127189 ENSMUSG00000078495 Zfp984 Gm13157 - 4|4 E1 zinc finger protein 984 protein-coding 93713 Mm.247203 NM_033588 ENSMUSG00000103567 Pcdhga5 - - 18|18 B3 protocadherin gamma subfamily A, 5 protein-coding 104812 Mm.459109 AI428406 - - - expressed sequence AI428406 unknown 78785 Mm.196382 NM_030179 ENSMUSG00000024059 Clip4 1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2 - 17|17 E1.3 CAP-GLY domain containing linker protein family, member 4 protein-coding 105245663 XR_874113 Gm41086 - - 14 A1|14 predicted gene, 41086 ncRNA 102634359 Gm29340 - - 2|2 predicted gene 29340 ncRNA 666367 Dppa5b - - 9|9 E1 developmental pluripotency associated 5B pseudo 619327 Mm.412752 NR_045156 ENSMUSG00000114959 G630093K05Rik - - 13|13 A5 RIKEN cDNA G630093K05 gene ncRNA 102466770 NR_105908 ENSMUSG00000099058 Mir6943 Gm27791|mmu-mir-6943 - 13|13 B1 microRNA 6943 ncRNA 234267 Mm.241700 NM_153581 ENSMUSG00000031517 Gpm6a Gpm6|M6A - 8|8 B1.3 glycoprotein m6a protein-coding 212399 Gm4777 EG212399 - 10|10 A4 actin, gamma, cytoplasmic 1 pseudogene pseudo 104301 Prt6 Prt-6 - - pancreatic proteinase 6 protein-coding 108168286 XR_001781925 LOC108168286 - - 16 B1 uncharacterized LOC108168286 ncRNA 117007 Pitm2 - - 4 42.13 cM prion incubation time 2 unknown 666270 Gm12072 - - 11|11 A3.3 predicted gene 12072 unknown 111939 Iap5rb14 - - - intracisternal A-type particle, U5 region, SINE repeat b-14 other 56357 Mm.6635 NM_019826 ENSMUSG00000027332 Ivd 1300016K07Rik|6720455E18Rik|AI463340 - 2|2 E5 isovaleryl coenzyme A dehydrogenase protein-coding 102637356 Gm34190 - - Y|Y tRNA methyltransferase 112 homolog pseudo 108167508 Gm46024 - - 7 B3|7 predicted gene, 46024 pseudo 76000 Mm.44949 XR_141159 5033430I15Rik - - 13|13 A5 RIKEN cDNA 5033430I15 gene unknown 320590 Mm.197449 NM_177200 ENSMUSG00000029830 Svopl 9430071P14Rik - 6|6 B1 SV2 related protein homolog (rat)-like protein-coding 100415770 Gm7869 EG665969 - 8|8 A2 zinc finger, MYM-type 5 pseudogene pseudo 258673 Mm.271515 NM_146678 ENSMUSG00000067524 Olfr1428 MOR239-5 - 19|19 A olfactory receptor 1428 protein-coding 100035909 Mpdk1 - - - modifier of polycystic kidney disease 1 unknown 100039901 Mm.390921 NM_175156 2810407A14Rik - - 16|16 C3.3 RIKEN cDNA 2810407A14 gene unknown 108519 Ms13-29 Ms13-Hf13 - - minisatellite 13-29 detected by M13 phage probe other 109280024 LOC109280024 Mm180 - - VISTA enhancer mm180 biological-region 100042931 Mm.374311 NM_001242950 ENSMUSG00000094904 H2al1d Gm14476 - X A1.1|X H2A histone family member L1D protein-coding 17764 Mm.272397 NM_008636 ENSMUSG00000028890 Mtf1 MTF-1|Thyls - 4 D2.2|4 57.91 cM metal response element binding transcription factor 1 protein-coding 13853 Mm.89946 NM_010146 ENSMUSG00000055493 Epm2a TG-B|Tg(TcraK,TcrbK)TG-BFlv - 10|10 A1 epilepsy, progressive myoclonic epilepsy, type 2 gene alpha protein-coding 674207 Gm9614 - - 15 A1|15 predicted gene 9614 pseudo 73920 4930405A07Rik - - 11|11 RIKEN cDNA 4930405A07 gene protein-coding 76949 2810404I24Rik - - 19|19 RIKEN cDNA 2810404I24 gene protein-coding 102632705 Gm21854 - - Y|Y predicted gene, 21854 protein-coding 69416 Mm.72491 NM_027074 ENSMUSG00000024728 1700025F22Rik - - 19|19 A RIKEN cDNA 1700025F22 gene protein-coding 62371 D11Mit133 - - 11 8.01 cM DNA segment, Chr 11, Massachusetts Institute of Technology 133 unknown 107449 Mm.290433 NM_029770 ENSMUSG00000020099 Unc5b 6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2 - 10 B4|10 31.52 cM unc-5 netrin receptor B protein-coding 228836 Mm.22094 NM_146128 ENSMUSG00000061689 Dlgap4 AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16 - 2|2 H1 DLG associated protein 4 protein-coding 102634216 Gm31855 - - 10|10 predicted gene, 31855 ncRNA 114249 Mm.279310 NM_033525 ENSMUSG00000040998 Npnt 1110009H02Rik|AA682063|AI314031|Nctn|POEM - 3|3 G3 nephronectin protein-coding 105244594 XR_867790 Gm40184 - - 3 H4|3 predicted gene, 40184 ncRNA 54485 Mm.143719 NM_019454 ENSMUSG00000027314 Dll4 Delta4 - 2|2 E5 delta like canonical Notch ligand 4 protein-coding 102638019 XR_390590 Gm34687 - - 4 B3|4 predicted gene, 34687 ncRNA 100036217 Tbbmd5 - - 11 51.23 cM total body bone mineral density 5 unknown 100038512 Gm12542 - - - predicted gene 12542 unknown 76218 Mm.75260 NR_102348 ENSMUSG00000085427 6430710C18Rik 5033406J01Rik - 2|2 C3 RIKEN cDNA 6430710C18 gene ncRNA 237052 Mm.40713 NM_146236 ENSMUSG00000049536 Tceal1 0610011M09Rik|BC011290|P21|SIIR|pp21 - X|X F1 transcription elongation factor A (SII)-like 1 protein-coding 17151 Mm.7838 NM_010761 ENSMUSG00000023572 Ccndbp1 AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8 - 2 E5|2 60.37 cM cyclin D-type binding-protein 1 protein-coding 109920 Ccd - - - cleidocranial dysplasia unknown 105245670 XR_874164 Gm41091 - - 14 A1|14 predicted gene, 41091 ncRNA 112203 Afpq6 - - - abdominal fat percent QTL 6 unknown 102632523 Gm29354 - - Y|Y predicted gene 29354 pseudo 105246586 LOC105246586 - - 19 C3 U1 small nuclear ribonucleoprotein C pseudogene pseudo 101055672 XM_006535858 LOC101055672 - - - nuclear body protein SP140-like protein-coding 52935 8L - - - DNA segment, 8L unknown 54616 Mm.103748 NM_018788 ENSMUSG00000021978 Extl3 2900009G18Rik|AU040105|Ext1l|mKIAA0519 - 14|14 D1 exostoses (multiple)-like 3 protein-coding 105247114 XR_881187 Gm42272 - - 4 A5|4 predicted gene, 42272 ncRNA 100035284 Hdlq46 - - - HDL QTL 46 unknown 100035594 Arigg8 - - - anti-RBC IgG antibodies 8 unknown 62218 D16Mit60 - - 16 23.27 cM DNA segment, Chr 16, Massachusetts Institute of Technology 60 unknown 100042441 Gm3848 - - 14 A1|14 predicted gene 3848 protein-coding 57344 Mm.28566 NM_020577 ENSMUSG00000003559 As3mt 2310045H08Rik|Cyt19 - 19|19 C3 arsenic (+3 oxidation state) methyltransferase protein-coding 27565 D5Buc18 253K12.T7 - 5 37.66 cM DNA segment, Chr 5, Bucan 18 unknown 100042988 Mm.319723 XR_874693 Gm4151 - - 14 D1|14 predicted gene 4151 unknown 102633991 Gm21918 - - Y|Y predicted gene, 21918 protein-coding 100416541 Gm11500 - - 11|11 D ribosomal protein L15 pseudogene pseudo 100038620 Gm10631 - - 8 D1|8 predicted gene 10631 protein-coding 100302400 Gm14752 - - X|X B suppressor of zeste 12 homolog pseudogene pseudo 68801 Mm.430736 NM_134255 ENSMUSG00000032349 Elovl5 1110059L23Rik|AI747313|AU043003|HELO1 - 9|9 E1 ELOVL family member 5, elongation of long chain fatty acids (yeast) protein-coding 105244637 Gm40214 - - 4|4 predicted gene, 40214 ncRNA 102639046 XR_380025 Gm35454 - - 9 F4|9 predicted gene, 35454 ncRNA 61309 D3Mit125 - - 3 63.4 cM DNA segment, Chr 3, Massachusetts Institute of Technology 125 unknown 102631943 LOC102631943 - - 19 C1 39S ribosomal protein L33, mitochondrial pseudogene pseudo 102635746 XR_876981 Gm33006 - - 17 E3|17 predicted gene, 33006 ncRNA 53748 D10Nds3 D0Nds22 - 10 27.64 cM DNA segment, Chr 10, Nuffield Department of Surgery 3 unknown 100502874 XR_104776 Gm19426 - - 2 D|2 49.45 cM predicted gene, 19426 ncRNA 102642066 XR_878123 Gm38595 - - X A7.3|X predicted gene, 38595 ncRNA 404565 AL118125 - - - expressed sequence AL118125 unknown 13499 Drr1 Drr1a|Drr1b|Drr1c - - developmentally regulated repeat element-containing transcript 1 unknown 69814 Mm.244143 NM_027220 ENSMUSG00000048992 Prss32 2010001P08Rik|mT5|tryptase-5 - 17 A3.3|17 12.09 cM protease, serine 32 protein-coding 72834 Mm.33042 NR_045176 ENSMUSG00000091475 2810468N07Rik - - 17|17 A3.3 RIKEN cDNA 2810468N07 gene ncRNA 102635870 XR_879983 Gm12315 - - 11 B3|11 43.16 cM predicted gene 12315 ncRNA 12317 Mm.1971 NM_007591 ENSMUSG00000003814 Calr CRT|Calregulin - 8 C2|8 41.21 cM calreticulin protein-coding 109547 Q - - - quinky unknown 20712 Spi16 mBM17 - - serine protease inhibitor 16 protein-coding 100885842 NR_049203 ENSMUSG00000093618 Mir5627 Gm23684|mir-5627|mmu-mir-5627 - 12|12 B2 microRNA 5627 ncRNA 71797 Mm.49071 NM_027928 ENSMUSG00000056643 Chst13 1110067M19Rik|C4ST-3 - 6|6 D1 carbohydrate (chondroitin 4) sulfotransferase 13 protein-coding 212712 Mm.145599 NM_139146 ENSMUSG00000038331 Satb2 mKIAA1034 - 1|1 C1.3 special AT-rich sequence binding protein 2 protein-coding 28019 Mm.262547 NM_133345 ENSMUSG00000030330 Ing4 D6Wsu147e|D6Xrf92|p29ING4 - 6 F2|6 59.17 cM inhibitor of growth family, member 4 protein-coding 111172 Tpi-rs3 Tpi-3 - - triosephosphate isomerase related sequence 3 pseudo 100526514 NR_037299 ENSMUSG00000093172 Mir3112 mmu-mir-3112 - X E3|X 55.66 cM microRNA 3112 ncRNA 93753 Hspe1-ps6 Cpn10-rs7 - 4 C5|4 heat shock protein 1 (chaperonin 10), pseudogene 6 pseudo 258216 Mm.330363 NM_001011872 ENSMUSG00000102091 Olfr1034 MOR227-8P|MOR245-14P|Olfr1533-ps1 - 2|2 D olfactory receptor 1034 protein-coding 103775 Mm.33647 NM_175333 ENSMUSG00000011486 Slc25a41 4933406J04Rik|AI507137 - 17|17 D solute carrier family 25, member 41 protein-coding 622054 Mm.293382 LOC622054 - - 18|18 A1 uncharacterized LOC622054 protein-coding 492877 Asbb3 sbb3 - 17 14.59 cM autoimmune susceptibility in C57BL/6J and BALB/c 3 unknown 239552 Mm.125650 NM_001081970 ENSMUSG00000056656 Apol8 9830006J20Rik|APOL-II|Apol2 - 15|15 E1 apolipoprotein L 8 protein-coding 329730 XR_375931 ENSMUSG00000104768 Gm38412 4631419I20|Gm43257 - 3|3 F2.2 predicted gene, 38412 ncRNA 667894 Gm8866 EG667894 - 15|15 F1 ribosomal protein S2 pseudogene pseudo 665478 Gm7653 EG665478 - 9|9 B dCTP pyrophosphatase 1 pseudogene pseudo 100041778 Gm3508 - - 1|1 E2.3 predicted gene 3508 pseudo 637667 Vmn2r-ps82 EG637667|Gm7216 - 7|7 D3 vomeronasal 2, receptor, pseudogene 82 pseudo 100316709 NR_035486 ENSMUSG00000088113 Mir1960 mir-1960|mmu-mir-1960 - 5 B1|5 16.07 cM microRNA 1960 ncRNA 382007 Mm.55952 NM_001009547 ENSMUSG00000063900 Adam26b - - 8|8 A4 a disintegrin and metallopeptidase domain 26B protein-coding 71830 Mm.84631 NM_027943 ENSMUSG00000030968 Pdilt 1700007B13Rik - 7|7 F2 protein disulfide isomerase-like, testis expressed protein-coding 12007 Mm.30061 NM_013478 ENSMUSG00000037053 Azgp1 Zag - 5 G2|5 76.92 cM alpha-2-glycoprotein 1, zinc protein-coding 102635944 XM_006509526 Gm33153 - - 8 B1.3|8 predicted gene, 33153 protein-coding 75048 Mm.243842 4930516E23Rik - - 10|10 RIKEN cDNA 4930516E23 gene protein-coding 622746 Gm6353 EG622746 - 12|12 C1 metallophosphoesterase 1 pseudogene pseudo 56372 Mm.24231 NM_019772 ENSMUSG00000030663 1110004F10Rik Smacp|Smap|sid2057|sid2057p - 7|7 F1 RIKEN cDNA 1110004F10 gene protein-coding 100040030 Mm.366499 NR_131155 Gm2560 - - 4 A1|4 predicted gene 2560 ncRNA 18129 Mm.485843 NM_010928 ENSMUSG00000027878 Notch2 AI853703|N2 - 3 F2.2|3 42.42 cM notch 2 protein-coding 100039916 Gm2492 - - 13|13 A1 zinc finger and SCAN domain containing 5B pseudogene pseudo 384857 Gm5355 EG384857 - 8 C2|8 keratin 8 pseudogene pseudo 102634244 Platr16 Gm13227 - 4|4 78.19 cM pluripotency associated transcript 16 ncRNA 102467475 n-TNgtt4 n-Tn4 - 3 F2.1|3 nuclear encoded tRNA asparagine 4 (anticodon GTT) tRNA 102636894 LOC102636894 - - 10 C1 destrin pseudogene pseudo 100041497 Gm3371 - - 14 C1|14 predicted gene 3371 protein-coding 72439 2610007B07Rik - - X|X RIKEN cDNA 2610007B07 gene protein-coding 100303735 Mm.372314 7330403C04Rik - - 17|17 RIKEN cDNA 7330403C04 gene unknown 102466634 NR_105782 ENSMUSG00000098482 Mir6363 Gm28026|mmu-mir-6363 - 16|16 B5 microRNA 6363 ncRNA 235293 Mm.32700 NM_172769 ENSMUSG00000032018 Sc5d A830037K02|A830073K23Rik|Sc5dl - 9|9 A5.1 sterol-C5-desaturase protein-coding 665020 LOC665020 - - 5|5 C3.3 uncharacterized LOC665020 protein-coding 231912 Mm.397405 NM_153572 ENSMUSG00000041298 Katnal1 - - 5|5 G3 katanin p60 subunit A-like 1 protein-coding 59093 Mm.272803 NM_021568 ENSMUSG00000001120 Pcbp3 AlphaCP-3 - 10|10 C1 poly(rC) binding protein 3 protein-coding 74211 Mm.428905 NM_028820 ENSMUSG00000032300 1700017B05Rik AA682102|D9Ertd278e - 9 B|9 30.89 cM RIKEN cDNA 1700017B05 gene protein-coding 108586 Iap5ra3 - - - intracisternal A-type particle, U5 region, SINE repeat a-3 other 16764 Mm.336679 NM_010678 ENSMUSG00000037138 Aff3 3222402O04Rik|A730046J16|LAF-4|Laf4 - 1 B|1 16.58 cM AF4/FMR2 family, member 3 protein-coding 320172 Mm.449039 NR_040278 ENSMUSG00000087231 E230016M11Rik - - 6|6 C1 RIKEN cDNA E230016M11 gene ncRNA 100042642 Gm3945 - - 14|14 C2 eukaryotic translation initiation factor 4H pseudogene pseudo 102638559 Gm35093 - - 2|2 predicted gene, 35093 ncRNA 493127 Elsgp1 - - 4 70.47 cM elevated serum gp70 1 unknown 100416979 Gm18346 - - 10|10 B1 predicted gene, 18346 pseudo 72175 Mm.130610 NM_028140 ENSMUSG00000025759 Mfsd8 2810423E13Rik|AI836898|AV142426|Cln7 - 3|3 B major facilitator superfamily domain containing 8 protein-coding 544767 Mm.363561 XR_879807 Gm5782 EG544767 - 11|11 B1.1 predicted gene 5782 unknown 102640676 XR_386061 Gm36689 - - 18 A1|18 predicted gene, 36689 ncRNA 100504593 Gm13431 - - 2|2 24.19 cM predicted gene 13431 unknown 19645 Mm.273862 NM_009029 ENSMUSG00000022105 Rb1 Rb|Rb-1|pRb|pp105 - 14 38.73 cM|14 D3 RB transcriptional corepressor 1 protein-coding 108167363 Gm45962 - - 10 B1|10 neutrophil immunoglobulin-like receptor 1 pseudo 110081 Yb2 - - - YB-2 DNA protein related sequence protein-coding 387158 NR_029553 ENSMUSG00000065439 Mir140 Mirn140|mir-140|mmu-mir-140 - 8|8 D3 microRNA 140 ncRNA 218311 Mm.82396 NM_183156 ENSMUSG00000051037 Zfp455 3732412P20Rik|Rslcan-10 - 13 B3|13 34.54 cM zinc finger protein 455 protein-coding 14694 Mm.5305 NM_008143 ENSMUSG00000020372 Rack1 AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205 - 11|11 B1.2 receptor for activated C kinase 1 protein-coding 18610 Mm.6239 NM_018863 ENSMUSG00000027400 Pdyn Dyn - 2 F1|2 63.19 cM prodynorphin protein-coding 212392 Mm.296649 NM_001033246 ENSMUSG00000071104 Ccdc110 Gm172 - 8|8 B1.1 coiled-coil domain containing 110 protein-coding 229697 Mm.297051 NM_001111143 ENSMUSG00000046213 Cym Gm131 - 3|3 F2.3 chymosin protein-coding 61610 D9Mit242 - - 9 55.36 cM DNA segment, Chr 9, Massachusetts Institute of Technology 242 unknown 12568 Mm.298798 NM_007668 ENSMUSG00000028969 Cdk5 AW048668|Crk6 - 5 A3|5 11.73 cM cyclin-dependent kinase 5 protein-coding 102632595 XR_377873 Gm30628 - - 6 D1|6 predicted gene, 30628 ncRNA 621579 Gm6242 EG621579 - 17|17 A1 myosin, light chain 12B, regulatory pseudogene pseudo 102633578 Mm.397484 NR_155274 ENSMUSG00000115888 Gm31369 - - 15 E1|15 predicted gene, 31369 ncRNA 19948 Rpl30-ps2 RpL30-3 - 8|8 A2 ribosomal protein L30, pseudogene 2 pseudo 109435 Remslp5 - - - rapid eye movement sleep 5 unknown 384410 Igkv4-92 Gm1408|Igkay4 - 6|6 C1 immunoglobulin kappa variable 4-92 other 23939 Mm.38172 NM_011841 ENSMUSG00000001034 Mapk7 BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo - 11|11 B2 mitogen-activated protein kinase 7 protein-coding 319999 9330169B04Rik - - 5|5 RIKEN cDNA 9330169B04 gene protein-coding 16179 Mm.38241 NM_008363 ENSMUSG00000031392 Irak1 AA408924|IRAK|IRAK-1|IRAK1-S|IRAK1b|Il1rak|Plpk|mPLK - X A7.3|X 37.61 cM interleukin-1 receptor-associated kinase 1 protein-coding 60703 D1Mit68 - - 1 4.12 cM DNA segment, Chr 1, Massachusetts Institute of Technology 68 unknown 18018 Mm.329560 NM_016791 ENSMUSG00000033016 Nfatc1 2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb - 18 E3|18 53.66 cM nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1 protein-coding 100416519 Gm18141 - - 17|17 E3 ribosomal protein L17 pseudogene pseudo 105463055 Erytha - - 1|1 Erytha, erythroid developmental long intergenic non-protein coding transcript ncRNA 108366 Mtv48 Mtv-44|Mtv-48 - - mammary tumor virus locus 48 other 320505 A530083M17Rik - - 3|3 RIKEN cDNA A530083M17 gene protein-coding 105246979 Gm42167 - - 5|5 predicted gene, 42167 protein-coding 53294 410O9T7 - - - DNA segment, 410O9T7 (Roswell Park) unknown 62433 D17Mit223 - - 17 2.66 cM DNA Segment, Chr 17, Massachusetts Institute of Technology 223 unknown 61198 D1Mit124 - - 1 28.83 cM DNA segment, Chr 1, Massachusetts Institute of Technology 124 unknown 60873 D6Mit75 - - 6 22.66 cM DNA segment, Chr 6, Massachusetts Institute of Technology 75 unknown 414110 Mm.236725 XR_880530 A430072P03Rik - - 5 F|5 RIKEN cDNA A430072P03 gene unknown 100503650 Sap30bpos Gm11721 - 11|11 80.91 cM SAP30 binding protein, opposite strand ncRNA 102640373 XR_377236 Gm36446 - - 5 G3|5 predicted gene, 36446 ncRNA 328334 Mm.462227 D230016O17 - - 13|13 D2.1 uncharacterized protein D230016O17 protein-coding 62817 D13Mit265 - - 13 13.74 cM DNA segment, Chr 13, Massachusetts Institute of Technology 265 unknown 333715 Mm.246798 NM_177923 ENSMUSG00000023083 H2-M10.2 4.7H - 17 B1|17 19.01 cM histocompatibility 2, M region locus 10.2 protein-coding 100042529 Gm3888 - - 15 E3|15 leucine-rich repeat LGI family, member 1 pseudogene pseudo 102636457 XR_382128 Gm33516 - - 13 A3.1|13 predicted gene, 33516 ncRNA 100416206 Gm17965 - - 1|1 H4 predicted gene, 17965 pseudo 78573 D530037P16Rik - - 3|3 RIKEN cDNA D530037P16 gene protein-coding 210925 Mm.71332 NM_153414 ENSMUSG00000021975 Ints9 BC028953|D14Ertd231e - 14 D1|14 33.81 cM integrator complex subunit 9 protein-coding 328483 Mm.390680 Trav6-3 Gm13948|Gm193|Gm4|TCR - 14|14 C2 T cell receptor alpha variable 6-3 other 100862408 LOC100862408 - - - killer cell lectin-like receptor 4 pseudo 666047 Gm7906 EG666047 - 11|11 A3.2 ferritin light chain 1 pseudogene pseudo 100036056 Psl2 - - 2 76.74 cM promotion susceptibility QTL 2 unknown 52549 D13Ertd212e - - 13 7.31 cM DNA segment, Chr 13, ERATO Doi 212, expressed unknown 100417375 Gm18574 - - 14|14 A1 ubiquitin specific peptidase 7 pseudogene pseudo 72400 Mm.379214 NM_028228 ENSMUSG00000021958 Pinx1 2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1 - 14|14 D1 PIN2/TERF1 interacting, telomerase inhibitor 1 protein-coding 102633118 XR_381391 Gm31025 - - 12 A2|12 predicted gene, 31025 ncRNA 102632232 XR_388636 Gm30366 - - 11 B1.3|11 predicted gene, 30366 ncRNA 66498 Mm.260360 NM_025600 ENSMUSG00000074247 Dda1 1500034J01Rik|1700095J19Rik|R74921 - 8|8 B3.3 DET1 and DDB1 associated 1 protein-coding 218121 Mm.89682 NM_153546 ENSMUSG00000038732 Mboat1 9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1 - 13|13 A3.2 membrane bound O-acyltransferase domain containing 1 protein-coding 320317 Mm.447984 A830010M09Rik - - 3|3 RIKEN cDNA A830010M09 gene protein-coding 61509 D8Mit117 - - 8 61.34 cM DNA segment, Chr 8, Massachusetts Institute of Technology 117 unknown 102635832 XR_382776 Gm33074 - - 13 D1|13 predicted gene, 33074 ncRNA 110761 Igkj3 Igk-J3 - 6 C1|6 32.04 cM immunoglobulin kappa joining 3 other 102640771 XR_001779411 ENSMUSG00000086706 LOC102640771 - - 1 E4 uncharacterized LOC102640771 ncRNA 218820 Mm.292401 NM_145459 ENSMUSG00000039081 Zfp503 AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503 - 14 A3|14 12.0 cM zinc finger protein 503 protein-coding 19027 Mm.246304 NM_013635 ENSMUSG00000020570 Sypl AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1 - 12 A3|12 13.87 cM synaptophysin-like protein protein-coding 105246965 XR_880574 Gm42155 - - 5 F|5 predicted gene, 42155 ncRNA 108167721 XR_001779371 LOC108167721 - - 9 F3 uncharacterized LOC108167721 ncRNA 102636440 Gm33503 - - 1|1 predicted gene, 33503 ncRNA 67327 Mm.87058 NR_138557 1700031L13Rik - - 5|5 E1 RIKEN cDNA 1700031L13 gene ncRNA 102636959 XR_389495 Gm33885 - - 5 E5|5 predicted gene, 33885 ncRNA 102638512 XR_379526 Gm35058 - - 9 B|9 predicted gene, 35058 ncRNA 62826 D13Mit234 - - 13 55.3 cM DNA segment, Chr 13, Massachusetts Institute of Technology 234 unknown 100125408 Femwf10 - - - femur work to failure 10 unknown 102632579 XR_380053 Gm30617 - - 10 A1|10 predicted gene, 30617 ncRNA 62644 D14Mit155 - - 14 31.52 cM DNA segment, Chr 14, Massachusetts Institute of Technology 155 unknown 102639287 XR_390190 Gm35634 - - 4 D2.3|4 predicted gene, 35634 ncRNA 381411 Mm.9889 NM_001033452 ENSMUSG00000075023 Accsl Gm1967 - 2|2 E1 1-aminocyclopropane-1-carboxylate synthase (non-functional)-like protein-coding 100504247 Gm14416 - - 2|2 99.22 cM predicted gene 14416 pseudo 51956 D13Sut1e - - - DNA segment, Chr 13, Sutcliffe 1 expressed unknown 26950 Mm.27005 NM_012038 ENSMUSG00000054459 Vsnl1 VILIP|Vnsl1 - 12|12 A1.1 visinin-like 1 protein-coding 21448 tclw18 tcl-w18 - - t-complex lethal w18 unknown 622707 Gm6344 - - 13 B1|13 ribosomal protein L29 pseudogene pseudo 665579 Rps12-ps13 EG665579|Gm7698 - X|X E3 ribosomal protein S12, pseudogene 13 pseudo 110454 Mm.425949 NM_010738 ENSMUSG00000075602 Ly6a Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP - 15 D3|15 34.29 cM lymphocyte antigen 6 complex, locus A protein-coding 51980 D6Ggc2e - - - DNA segment, Chr 6, G. Consalez 2, expressed unknown 102634433 XR_379364 Gm32016 - - 9 A5.3|9 predicted gene, 32016 ncRNA 209541 Gm4760 EG209541 - X|X F2 actin, beta pseudogene pseudo 259126 Mm.377863 NM_147122 ENSMUSG00000099687 Olfr623 MOR1-4 - 7|7 E3 olfactory receptor 623 protein-coding 73813 Mm.322591 NM_001033170 ENSMUSG00000054161 Fam83e 4930403C10Rik - 7|7 B3 family with sequence similarity 83, member E protein-coding 211550 Mm.31852 NM_145133 ENSMUSG00000046688 Tifa T2bp - 3|3 G2 TRAF-interacting protein with forkhead-associated domain protein-coding 102631687 Gm29962 - - 2|2 predicted gene, 29962 ncRNA 54448 Mm.133095 NM_019450 ENSMUSG00000026984 Il1f6 Fil1|IL-1H1|IL1RP2|Il1f9|Il36a - 2 A3|2 16.26 cM interleukin 1 family, member 6 protein-coding 26462 Mm.390906 NM_013711 ENSMUSG00000075704 Txnrd2 AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2 - 16 A3|16 11.41 cM thioredoxin reductase 2 protein-coding 27725 D1Sta4 - - 1 80.33 cM DNA segment, Chr 1, Philip Stanier 4 unknown 171210 Mm.371675 NM_134188 ENSMUSG00000021226 Acot2 AA571646|MTE-I|Mte1 - 12|12 D1 acyl-CoA thioesterase 2 protein-coding 100416198 Gm17963 - - X|X D ribosomal protein 10 pseudogene pseudo 111312 Hmgn2-rs11 Hmg17-rs11 - - high mobility group nucleosomal binding domain 2, related sequence 11 pseudo 240084 Mm.49544 NM_146248 ENSMUSG00000040312 Cchcr1 Hcr - 17|17 B1 coiled-coil alpha-helical rod protein 1 protein-coding 102637688 XR_376162 Gm34434 - - 3 H2|3 predicted gene, 34434 ncRNA 676688 Gm9685 - - 8|8 B1.3 predicted gene 9685 pseudo 100499513 NR_037213 ENSMUSG00000092815 Mir3099 mir-3099|mmu-mir-3099 - 7 A1|7 3.95 cM microRNA 3099 ncRNA 105244133 Gm39800 - - 2|2 predicted gene, 39800 protein-coding 16636 Mm.14111 NM_008463 ENSMUSG00000030173 Klra5 Ly49e - 6 F3|6 63.44 cM killer cell lectin-like receptor, subfamily A, member 5 protein-coding 108168589 XM_017318793 LOC108168589 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 102634391 XR_378839 Gm31983 Gm45582 - 8 A2|8 predicted gene, 31983 ncRNA 111662 Iap11-1 Iap(Il-3) - - intracisternal A particles, Il3 linked other 244871 Mm.295686 NM_001162921 ENSMUSG00000035164 Zc3h12c A230108E06|C230027N18Rik|mKIAA1726 - 9|9 A5.3 zinc finger CCCH type containing 12C protein-coding 66747 Mm.34441 NM_025743 ENSMUSG00000055357 4933400A11Rik - - X|X F5 capping protein (actin filament) muscle Z-line, alpha 1 pseudogene pseudo 105246974 XR_880610 Gm42162 - - 5 E1|5 predicted gene, 42162 pseudo 102566 Mm.87676 NM_133979 ENSMUSG00000037949 Ano10 AI604832|Tmem16k - 9|9 F4 anoctamin 10 protein-coding 224624 Mm.328872 NM_139154 ENSMUSG00000025730 Rab40c RAR3 - 17|17 A3.3 Rab40C, member RAS oncogene family protein-coding 20765 Mm.57085 NM_011477 ENSMUSG00000054215 Sprr2k - - 3 F1|3 40.14 cM small proline-rich protein 2K protein-coding 109385 Bwq4 - - 18 18.83 cM body weight, QTL 4 unknown 73295 Mm.416858 NR_040691 ENSMUSG00000101762 1700047L14Rik - - 5|5 F RIKEN cDNA 1700047L14 gene ncRNA 330097 Mm.78496 NM_001256184 ENSMUSG00000094719 Gm5108 EG330097 - 5|5 C3.1 predicted gene 5108 protein-coding 100040726 Gm2930 - - 14|14 B predicted gene 2930 pseudo 102640000 Gm14578 - - X A4|X 23.34 cM predicted gene 14578 pseudo 330908 Mm.379474 NM_177906 ENSMUSG00000062257 Opcml 2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam - 9 A4|9 13.73 cM opioid binding protein/cell adhesion molecule-like protein-coding 60345 Mm.269883 NM_021717 ENSMUSG00000001520 Nrip2 AW491344|NIX1 - 6|6 F3 nuclear receptor interacting protein 2 protein-coding 106039 Mm.251331 NM_145929 ENSMUSG00000033128 Gga1 4930406E12Rik|AU016030|AW209092 - 15|15 E1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 protein-coding 53719 D5H4S80 D4S80h - - DNA segment, Chr 5, human D4S80 unknown 109333 Mm.244236 NM_178654 ENSMUSG00000004591 Pkn2 6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7 - 3 H1|3 66.69 cM protein kinase N2 protein-coding 619306 Mm.3238 NM_001033810 B430319F04Rik - - 7|7 E3 RIKEN cDNA B430319F04 gene unknown 666648 Gm8213 EG666648 - 6|6 E3 predicted pseudogene 8213 pseudo 193670 Mm.136973 NM_145355 ENSMUSG00000020448 Rnf185 - - 11|11 A1 ring finger protein 185 protein-coding 382206 Mm.391220 NM_199063 ENSMUSG00000035371 Ssx9 Ssxb4 - X|X A1.1 synovial sarcoma, X 9 protein-coding 52176 D8Ertd124e - - 8 30.92 cM DNA segment, Chr 8, ERATO Doi 124, expressed unknown 108168192 Gm46476 - - 14 D1|14 predicted gene, 46476 pseudo 621335 Mm.208080 NR_044988 ENSMUSG00000109827 Gm6213 EG621335 - 8|8 A4 predicted gene 6213 ncRNA 105247082 XR_881013 Gm15281 - - X A3.2|X 19.87 cM predicted gene 15281 ncRNA 209584 Mm.347513 NM_172474 ENSMUSG00000047583 Tyw3 5230400J09Rik - 3|3 H4 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) protein-coding 67705 Mm.228046 NR_015608 ENSMUSG00000073155 1810058I24Rik AI414869|AI848234 - 6|6 B1 RIKEN cDNA 1810058I24 gene ncRNA 17385 Mm.4561 NM_008606 ENSMUSG00000000901 Mmp11 MMP-11|SL-3|ST3|Stmy3 - 10 C1|10 38.62 cM matrix metallopeptidase 11 protein-coding 110598 Cnpl Cnp-2|Cnp2 - - cyclic nucleotide phosphodiesterase-like protein-coding 258923 Mm.246523 NM_146921 ENSMUSG00000069823 Olfr1 I54|MOR135-13 - 11 B4|11 45.33 cM olfactory receptor 1 protein-coding 237360 Mm.333252 NM_001081127 ENSMUSG00000059901 Adamts14 Adamts-14|TS14 - 10|10 B4 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14 protein-coding 100038604 3426406K10Rik - - X B|X RIKEN cDNA 3426406K10 gene unknown 235587 Mm.273659 NM_145619 ENSMUSG00000023249 Parp3 A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3 - 9|9 F1 poly (ADP-ribose) polymerase family, member 3 protein-coding 69073 Mm.299081 NM_133707 ENSMUSG00000037600 Kdf1 1810019J16Rik - 4|4 D2.3 keratinocyte differentiation factor 1 protein-coding 67483 Mm.443287 NM_026188 ENSMUSG00000033053 1700028P14Rik AV209940 - 19|19 B RIKEN cDNA 1700028P14 gene protein-coding 97432 T25625 - - - expressed sequence T25625 unknown 100040639 Vmn1r-ps128 Gm11324 - 13|13 A3.1 vomeronasal 1 receptor, pseudogene 128 pseudo 69555 Mm.65906 2310033F14Rik - - 3|3 RIKEN cDNA 2310033F14 gene protein-coding 30858 C78205 - - - EST C78205 unknown 666911 Gm8358 EG666911 - 12 D1|12 ribosomal protein L17 pseudogene pseudo 319438 E330019L11Rik - - 15|15 RIKEN cDNA E330019L11 gene protein-coding 52477 Mm.289914 NM_021421 ENSMUSG00000026634 Angel2 2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e - 1 H6|1 96.28 cM angel homolog 2 protein-coding 100036108 Hdlq47 - - - HDL QTL 47 unknown 71576 Mm.340077 NR_130315 ENSMUSG00000085683 Tmem238l 9130409J20Rik - 11|11 B3 transmembrane protein 238 like ncRNA 102639076 XR_385504 LOC102639076 - - 17 A3.3 uncharacterized LOC102639076 ncRNA 71304 Mm.482317 NR_026907 ENSMUSG00000054909 Wbscr25 4933433J03Rik|4933439O14Rik - 5|5 G2 Williams Beuren syndrome chromosome region 25 (human) ncRNA 320152 Mm.159946 NR_030693 4930412C18Rik 5730591J02Rik - 4|4 A1 RIKEN cDNA 4930412C18 gene ncRNA 68686 Mm.260890 1110035H17Rik - - 7|7 RIKEN cDNA 1110035H17 gene protein-coding 111882 Iap5ra1 - - - intracisternal A-type particle, U5 region, SINE repeat a-1 other 637083 Gm7200 EG637083 - 1|1 E2.3 retinoblastoma binding protein 4 pseudogene pseudo 21111 T(2;11)30H T30H - - reciprocal translocation, Chr 2 and 11, Harwell 30 other 109408 Gusr GSR - - gutter shaped root unknown 53110 EC100RR - - - DNA segment, EC100RR unknown 108168195 XR_001781413 Gm46479 - - 14 B|14 predicted gene, 46479 ncRNA 105244740 XR_868403 Gm40296 - - 5 B3|5 predicted gene, 40296 ncRNA 777675 Ighd2-5 Gm16781 - 12|12 F1 immunoglobulin heavy diversity 2-5 other 109279978 LOC109279978 Mm671 - - VISTA enhancer mm671 biological-region 791070 NR_030417 ENSMUSG00000076460 Mir744 Mirn744|mir-744|mmu-mir-744 - 11 B3|11 microRNA 744 ncRNA 75152 4930540A11Rik - - 8|8 RIKEN cDNA 4930540A11 gene protein-coding 100124343 Traj45 Gm16927 - 14|14 C2 T cell receptor alpha joining 45 other 140571 Mm.275600 NM_019587 ENSMUSG00000031385 Plxnb3 AI451018|Plxn6 - X|X A7.3 plexin B3 protein-coding 56839 Mm.298251 NM_020278 ENSMUSG00000067242 Lgi1 BB130740 - 19|19 C3 leucine-rich repeat LGI family, member 1 protein-coding 102635632 XR_373309 Gm32920 - - 1 B|1 predicted gene, 32920 ncRNA 76306 Mm.294271 NM_183116 ENSMUSG00000037455 Slc18b1 1110021L09Rik - 10|10 A4 solute carrier family 18, subfamily B, member 1 protein-coding 13179 Mm.56769 NM_007833 ENSMUSG00000019929 Dcn DC|DSPG2|PG40|PGII|PGS2|SLRR1B - 10 C3|10 50.27 cM decorin protein-coding 102636669 XR_390470 Gm33672 - - 4 A5|4 predicted gene, 33672 ncRNA 102634848 Mm.421321 XR_379368 Gm32335 - - 9 A5.3|9 predicted gene, 32335 ncRNA 102639042 Gm35453 - - 8|8 predicted gene, 35453 ncRNA 108769 5730563F14Rik AV308215 - 17|17 RIKEN cDNA 5730563F14 gene protein-coding 102637620 Gm34382 - - 12|12 predicted gene, 34382 ncRNA 100418326 Gm12978 - - 4|4 D2.3 phosphatidylinositol 3-kinase, catalytic, beta polypeptide pseudogene pseudo 61304 D3Mit114a D3Mit114 - 3 78.31 cM DNA segment, Chr 3, Massachusetts Institute of Technology 114a unknown 102640595 Gm36622 - - 2|2 predicted gene, 36622 ncRNA 259050 Mm.377808 NM_147048 ENSMUSG00000073927 Olfr652 MOR318 - 7|7 E3 olfactory receptor 652 protein-coding 111301 Hmgn2-rs1 Hmg17-rs1 - - high mobility group nucleosomal binding domain 2, related sequence 1 pseudo 101056201 Gm28397 - - Y|Y predicted gene 28397 protein-coding 110485 Tcra-V4.6 - - - T cell receptor alpha, variable 4.6 other 21922 Mm.34588 NM_011606 ENSMUSG00000025784 Clec3b Tna - 9 F4|9 73.91 cM C-type lectin domain family 3, member b protein-coding 104116 H29 H-29 - - histocompatibility 29 protein-coding 102639358 XR_374289 Gm27197 - - 2 B|2 predicted gene 27197 ncRNA 237860 Mm.440381 NM_177710 ENSMUSG00000037926 Ssh2 SSH-2|SSH-2L|mSSH-2L - 11|11 B5 slingshot protein phosphatase 2 protein-coding 629204 Gm6956 EG629204 - X|X A2 predicted gene 6956 pseudo 67357 Mm.71129 NR_045467 ENSMUSG00000086781 1700092C02Rik - - 8|8 C1 RIKEN cDNA 1700092C02 gene ncRNA 66713 Mm.259045 NM_146243 ENSMUSG00000020152 Actr2 4921510D23Rik|AA409782|Arp2|D6Ertd746e - 11 A3.1|11 12.88 cM ARP2 actin-related protein 2 protein-coding 61444 D6Mit120 - - 6 28.84 cM DNA segment, Chr 6, Massachusetts Institute of Technology 120 unknown 105243007 XR_869821 Gm39056 - - 7 E1|7 predicted gene, 39056 ncRNA 258663 Mm.377626 NM_146668 ENSMUSG00000057903 Olfr739 MOR106-2 - 14|14 C1 olfactory receptor 739 protein-coding 100379127 Mm.403598 Gm16491 - - 10 D3|10 predicted gene 16491 unknown 100502701 Gm14768 - - X B|X 38.38 cM splicing factor, arginine/serine-rich 13A-like pseudo 64075 Mm.273295 NM_022316 ENSMUSG00000021136 Smoc1 2600002F22Rik|AI848508|SRG - 12|12 D1 SPARC related modular calcium binding 1 protein-coding 105245173 XR_873115 Gm40663 - - 13 A1|13 predicted gene, 40663 ncRNA 105245718 Gm41126 - - 14|14 predicted gene, 41126 ncRNA 105244651 LOC105244651 - - 4 C7 40S ribosomal protein S24 pseudogene pseudo 70001 Mm.417851 NR_033605 ENSMUSG00000099417 1700028B04Rik - - 7|7 B1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 pseudogene pseudo 108167356 XR_001781390 LOC108167356 - - 14 A1 uncharacterized LOC108167356 ncRNA 320796 C030044O21Rik - - 11|11 RIKEN cDNA C030044O21 gene protein-coding 110526 Prdx1-rs4 - - - peroxiredoxin 1, related sequence 4 protein-coding 102635228 Gm12318 - - 11|11 43.21 cM predicted gene 12318 pseudo 66540 Mm.277864 NM_025626 ENSMUSG00000026655 Fam107b 3110001A13Rik|AA589595|AA959793|AI132312 - 2|2 A1 family with sequence similarity 107, member B protein-coding 102638721 Mm.390635 XR_382807 ENSMUSG00000114569 Gm35215 - - 13 D1|13 predicted gene, 35215 ncRNA 28094 DYzEms6 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 6 unknown 110918 Lamr1-rs5 67kDa|P40-rs5 - - laminin receptor 1 (ribosomal protein SA), related sequence 5 protein-coding 72892 2900018K06Rik - - 2|2 RIKEN cDNA 2900018K06 gene protein-coding 100036423 Ltsd6 - - 19 44.81 cM lung tumor shape-determining 6 unknown 60765 D2Mit65 - - 2 22.09 cM DNA segment, Chr 2, Massachusetts Institute of Technology 65 unknown 100035018 Hdl35 - - - HDL level 35 unknown 108168864 XR_001783810 Gm46799 - - 3 B|3 predicted gene, 46799 ncRNA 100041135 Gm11363 - - 13|13 A3.1 predicted gene 11363 pseudo 60882 D7Mit62 - - 7 48.36 cM DNA segment, Chr 7, Massachusetts Institute of Technology 62 unknown 102637109 XR_379509 Gm34004 - - 9 B|9 predicted gene, 34004 ncRNA 100417435 Gm18610 - - 19|19 B thioredoxin domain containing 9 pseudogene pseudo 320241 E430026H10Rik - - 6|6 RIKEN cDNA E430026H10 gene protein-coding 110536 H2-D2 H-2D2 - - histocompatibility 2, D region locus 2 protein-coding 102632067 Gm28749 - - Y|Y predicted gene 28749 ncRNA 238386 Mm.63456 NM_172806 ENSMUSG00000041702 Btbd7 5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525 - 12|12 E BTB (POZ) domain containing 7 protein-coding 13447 Mm.5137 NM_007873 ENSMUSG00000020848 Doc2b - - 11|11 B5 double C2, beta protein-coding 15398 Mm.377086 NM_008264 Hoxa13 Hd|Hox-1.10 - 6 B3|6 25.41 cM homeobox A13 protein-coding 627049 Mm.84441 NM_001081678 ENSMUSG00000039841 Zfp800 AA407452|Znf800 - 6|6 A3.2-A3.3 zinc finger protein 800 protein-coding 359974 DXMgc111 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 111 unknown 492883 Cd4ts2 - - 4 37.32 cM CD4 T cell subset 2 unknown 13056 Mm.149403 NM_007805 ENSMUSG00000019590 Cyb561 - - 11 E1|11 68.81 cM cytochrome b-561 protein-coding 83555 Mm.193025 NM_031381 ENSMUSG00000042386 Tex13b 4933403J23Rik|Tex13 - X|X F1 testis expressed 13B protein-coding 106780808 Obox4-ps2 Gm27172 - 7 A1|7 oocyte specific homeobox 4, pseudogene 2 pseudo 624465 Gm12420 - - 4|4 C4 serine incorporator 3 pseudogene pseudo 100042503 XM_001478443 Gm3873 - - 19 B|19 predicted gene 3873 protein-coding 62044 D8Mit359 - - 8 34.87 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 359 unknown 108168551 XM_017318744 ENSMUSG00000099541 LOC108168551 - - Y A2 X-linked lymphocyte-regulated protein PM1-like protein-coding 105245579 Gm41017 - - 13|13 predicted gene, 41017 protein-coding 102633153 Gm31052 - - 10|10 predicted gene, 31052 ncRNA 20685 Sp100-rs1 D1Lub1 - - nuclear antigen Sp100, related sequence 1 protein-coding 110634 H2-Q12 Q12 - - histocompatibility 2, Q region locus 12 protein-coding 107980444 Ecr2 - - - Pax3 enhancer in intron 4 biological-region 100035217 Mfiq3 - - - M16 feed intake QTL 3 unknown 74890 Mm.141383 NM_029112 ENSMUSG00000029477 Morn3 4930438O03Rik - 5|5 F MORN repeat containing 3 protein-coding 62786 D15Mit212 - - 15 29.96 cM DNA segment, Chr 15, Massachusetts Institute of Technology 212 unknown 384071 Mm.295682 NM_001013780 ENSMUSG00000040740 Slc25a34 Gm1369 - 4|4 D3 solute carrier family 25, member 34 protein-coding 108511966 Zfpm1r6 - - 8 E1 Zfpm1R6 erythroid cis-regulatory module biological-region 111671 Myhc - - - myosin heavy chain, cardiac muscle complex other 100036438 Hlbsb1 - - 7 73.19 cM hepatic lipase activity in BSB 1 unknown 14790 Mm.439877 NM_013535 ENSMUSG00000072772 Grcc10 2310033H05Rik|C10 - 6 F2|6 59.17 cM gene rich cluster, C10 gene protein-coding 102634506 Gm32072 - - 5|5 predicted gene, 32072 pseudo 100035943 Bmd1a BMD1-1 - 1 67.67 cM bone mineral density 1a unknown 76295 Mm.239416 NM_029570 ENSMUSG00000037400 Atp11b 1110019I14Rik|ATPIF|ATPIR|mKIAA0956 - 3|3 B ATPase, class VI, type 11B protein-coding 100040086 Mm.277354 Gm2590 - - 13 D1|13 predicted gene 2590 unknown 77740 Mm.484593 XR_870663 ENSMUSG00000111511 6720432D03Rik - - 9|9 A5.1 RIKEN cDNA 6720432D03 gene ncRNA 62039 D5Mit425 - - 5 60.44 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 425 unknown 11927 Mm.217759 NM_009720 ENSMUSG00000018585 Atox1 AI256639|Atx1 - 11 B1.3|11 33.07 cM antioxidant 1 copper chaperone protein-coding 629303 Mm.390417 NM_001045543 ENSMUSG00000018925 Heatr9 Gm11435 - 11 C|11 HEAT repeat containing 9 protein-coding 320374 Mm.400470 7530414M10Rik - - 15|15 E1 RIKEN cDNA 7530414M10 gene protein-coding 102634365 XR_386813 Gm31965 - - 19 D2|19 predicted gene, 31965 ncRNA 100042218 XR_386581 Gm3728 - - 19 B|19 predicted gene 3728 protein-coding 106274 Mm.434634 AI848615 - - - expressed sequence AI848615 unknown 23962 Mm.228363 NM_011854 ENSMUSG00000029561 Oasl2 M1204|Mmu-OASL|Oasl - 5|5 F 2'-5' oligoadenylate synthetase-like 2 protein-coding 66455 Mm.24592 NM_178612 ENSMUSG00000036968 Cnpy4 2610019P18Rik - 5|5 G2 canopy FGF signaling regulator 4 protein-coding 102640014 XR_377969 Gm36190 - - 6 E3|6 predicted gene, 36190 ncRNA 100035413 Bczr2 - - - brain copper/zinc regulation 2 unknown 107694 Actn2-rs1 - - - actinin alpha 2, related sequence 1 protein-coding 108168805 XR_001783505 Gm46771 - - 2 G3|2 predicted gene, 46771 ncRNA 21912 Mm.18590 NM_019634 ENSMUSG00000058254 Tspan7 1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2 - X|X A1.1 tetraspanin 7 protein-coding 102632376 XR_387488 Gm30465 - - 1 G3|1 predicted gene, 30465 ncRNA 101456 AA517545 - - - expressed sequence AA517545 protein-coding 105247289 Gm42410 - - Y|Y predicted gene, 42410 ncRNA 102636188 XR_875640 Gm33325 - - 15 F1|15 predicted gene, 33325 ncRNA 667080 Gm12987 - - 4|4 D3 predicted gene 12987 pseudo 102638517 Gm35061 - - 10 C1|10 predicted gene, 35061 pseudo 619291 5330413D20Rik - - - RIKEN cDNA 5330413D20 gene protein-coding 338349 Mm.440562 NM_175275 ENSMUSG00000038070 Cntln AI448092|B430108F07Rik|D530005L17Rik - 4|4 C4 centlein, centrosomal protein protein-coding 14177 Mm.3403 NM_010204 ENSMUSG00000000183 Fgf6 Fgf-6|HSTF-2 - 6 F3|6 61.92 cM fibroblast growth factor 6 protein-coding 102640822 XR_374324 Nr6a1os Gm13507|Gm36800 - 2 B|2 nuclear receptor subfamily 6, group A, member 1, opposite strand ncRNA 100504191 Mm.421420 NR_045069 ENSMUSG00000087543 Gm16576 - - 15 E1|15 37.85 cM predicted gene 16576 ncRNA 14066 Mm.273188 NM_010171 ENSMUSG00000028128 F3 AA409063|CD142|Cf-3|Cf3|TF - 3 G1|3 52.94 cM coagulation factor III protein-coding 18300 Mm.25351 NM_146050 ENSMUSG00000021749 Oit1 2310076N21Rik|AV067083|EF-7|Fam3d - 14|14 A1 oncoprotein induced transcript 1 protein-coding 17631 Ms54 MMS54 - - minisatellites detected by probe MMS54 other 75731 Mm.293919 NM_198004 ENSMUSG00000050002 Idnk 5133401N09Rik - 13|13 B1 idnK gluconokinase homolog (E. coli) protein-coding 102632246 NR_151541 Gm12354 - - 4 A3|4 7.56 cM predicted gene 12354 ncRNA 234695 Mm.471640 NM_001033320 ENSMUSG00000050357 Carmil2 CG1399-PB|D130029J02Rik|Gm585|Rltpr - 8|8 D3 capping protein regulator and myosin 1 linker 2 protein-coding 102634293 Mm.404524 XR_375681 Gm31914 - - 3 C|3 predicted gene, 31914 ncRNA 66775 Mm.386788 NM_025760 ENSMUSG00000028497 Hacd4 4933428I03Rik|Hcad4|Ptplad2 - 4|4 C4 3-hydroxyacyl-CoA dehydratase 4 protein-coding 19268 Mm.29855 NM_011213 ENSMUSG00000033295 Ptprf AA591035|LAR|LARS|RPTP-LAR - 4|4 D2.1 protein tyrosine phosphatase, receptor type, F protein-coding 108168593 XM_017318799 LOC108168593 - - Y C3 X-linked lymphocyte-regulated protein PM1-like protein-coding 666903 Gm8354 EG666903 - 1|1 C1.1 non-POU-domain-containing, octamer binding protein pseudogene pseudo 61324 D3Mit180 - - 3 16.86 cM DNA segment, Chr 3, Massachusetts Institute of Technology 180 unknown 12346 Mm.273195 NM_009799 ENSMUSG00000027556 Car1 AW555628|Ca1|Car-1 - 3 A1|3 3.18 cM carbonic anhydrase 1 protein-coding 380711 Mm.425690 NM_001015046 ENSMUSG00000038807 Rap1gap2 AU067654|Garnl4|Gm1561|mKIAA1039 - 11|11 B5 RAP1 GTPase activating protein 2 protein-coding 112250 Smgd1 - - 9 51.41 cM submucosal gland distribution 1 unknown 116978 Morph2 - - 9 20.74 cM morphine antinociception 2 unknown 98149 C79607 - - - expressed sequence C79607 unknown 100418163 Gm19045 - - 12|12 C2 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 675749 Mm.441334 XR_001778025 ENSMUSG00000074420 Gm10693 - - 7|7 A1 predicted pseudogene 10693 pseudo 108167735 XM_017313851 Gm46164 - - 1 G3|1 predicted gene, 46164 protein-coding 105242913 XR_881972 Gm38992 - - 7 B2|7 predicted gene, 38992 ncRNA 111274023 LOC111274023 - - - nuclear transport factor 2 pseudogene pseudo 108168251 XR_001781726 Gm46526 - - 15 E2|15 predicted gene, 46526 ncRNA 208967 Mm.268841 NM_177588 ENSMUSG00000048550 Thnsl1 AW413632 - 2|2 A3 threonine synthase-like 1 (bacterial) protein-coding 66176 Mm.86823 NM_025400 ENSMUSG00000015542 Nat9 1110028N05Rik - 11|11 E2 N-acetyltransferase 9 (GCN5-related, putative) protein-coding 62556 D12Mit107 - - 12 11.86 cM DNA segment, Chr 12, Massachusetts Institute of Technology 107 unknown 230917 Mm.266704 NM_177672 ENSMUSG00000044700 Tmem201 AV028368|D4Ertd429e|Net5|Samp1 - 4 E2|4 80.15 cM transmembrane protein 201 protein-coding 258408 Mm.377485 NM_146413 ENSMUSG00000093920 Olfr463 MOR240-1 - 11|11 C olfactory receptor 463 protein-coding 102639490 Gm21858 - - Y|Y predicted gene, 21858 protein-coding 77363 Mm.491634 9530004P13Rik - - 8|8 A4 RIKEN cDNA 9530004P13 gene ncRNA 100862045 Gm21427 - - Y|Y predicted gene, 21427 protein-coding 102467483 n-TDgtc9 n-Td9 - 11 B3|11 nuclear encoded tRNA aspartic acid 9 (anticodon GTC) tRNA 224836 Mm.59393 NM_198421 ENSMUSG00000090115 Usp49 C330046L10Rik|Gm545 - 17|17 C ubiquitin specific peptidase 49 protein-coding 108168372 XR_001782427 LOC108168372 - - 18 A1 uncharacterized LOC108168372 ncRNA 622781 Gm6356 EG622781 - - predicted gene 6356 protein-coding 21393 Mm.10762 NM_011540 ENSMUSG00000007877 Tcap AI503981|AJ223855 - 11|11 D titin-cap protein-coding 432677 Mm.311913 NM_001033776 ENSMUSG00000071235 Vrtn 7420416P09Rik - 12|12 D1 vertebrae development associated protein-coding 61978 D8Mit324 - - 8 73.65 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 324 unknown 100502630 Mm.490013 NR_045266 ENSMUSG00000087138 Gm15545 - - 7 B3|7 29.07 cM predicted gene 15545 ncRNA 674908 Gm9632 - - 3|3 G1 high mobility group box 1 pseudogene pseudo 665107 Gm7494 EG665107 - 5|5 C3.3 ribosomal protein L23a pseudogene pseudo 74337 Mm.250943 NM_028877 ENSMUSG00000047986 Palm3 4432412L15Rik|AL024300 - 8|8 C2 paralemmin 3 protein-coding 211482 Mm.60887 NM_172497 ENSMUSG00000023931 Efhb 4921525D22Rik - 17|17 C EF hand domain family, member B protein-coding 671564 Mm.244849 XM_006535331 ENSMUSG00000055385 Rnf212 EG330157|F830003B07|repro57 - 5|5 F ring finger protein 212 protein-coding 52645 Mm.188475 NR_040474 D16Ertd519e - - 16 C3.1|16 DNA segment, Chr 16, ERATO Doi 519, expressed ncRNA 606533 Gm6064 EG606533|Ppia-ps6_1128.1 - 6|6 E1 peptidylprolyl isomerase A pseudogene 6_1128.1 pseudo 100416139 Gm17937 - - 5|5 E5 calponin 3, acidic pseudogene pseudo 100040757 Gm2950 - - 9|9 E3.3 predicted gene 2950 pseudo 28129 D11Wsu173e - - 11 80.91 cM DNA segment, Chr 11, Wayne State University 173, expressed unknown 100505025 Mm.387218 NR_105062 ENSMUSG00000108530 4930429H19Rik - - 7|7 D1 RIKEN cDNA 4930429H19 gene ncRNA 102640740 XR_378470 Gm36736 Gm45077 - 7 F2|7 predicted gene, 36736 ncRNA 16693 Mm.310906 NM_001113406 ENSMUSG00000091212 Krtap11-1 AA162070|AA589467|AV018433|Hacl1|KAP11.1|PRED29 - 16|16 C3.3 keratin associated protein 11-1 protein-coding 637273 Gm7204 EG637273 - 16|16 B5 peroxiredoxin 1 pseudogene pseudo 216860 Mm.268347 NM_001013414 ENSMUSG00000047284 Neurl4 - - 11|11 B3 neuralized E3 ubiquitin protein ligase 4 protein-coding 100113453 Brml14 - - - bone response to mechanical loading 14 unknown 692155 Igkv13-89-1 gf33 - 6|6 C1 immunoglobulin kappa chain variable 13-89-1 pseudo 105244199 XR_866425 Gm39849 - - 2 C3|2 predicted gene, 39849 ncRNA 100039065 Mm.411645 NM_001100445 ENSMUSG00000083628 Gm2030 - - X A2|X predicted gene 2030 protein-coding 21507 Mm.425911 Trav5-4 Tcra-V13.1 - 14 C2|14 27.48 cM T cell receptor alpha variable 5-4 other 105246265 Gm41573 - - 17|17 predicted gene, 41573 ncRNA 105243469 XR_870956 ENSMUSG00000098747 Gm27216 - - 9 E2|9 predicted gene 27216 ncRNA 666342 Gm8055 EG666342 - 10|10 B1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100417852 Gm18863 - - 9|9 E1 heterogeneous nuclear ribonucleoprotein L pseudogene pseudo 16402 Mm.16234 NM_010577 ENSMUSG00000000555 Itga5 Cd49e|Fnra|VLA5 - 15 F3|15 58.9 cM integrin alpha 5 (fibronectin receptor alpha) protein-coding 673132 Gm16506 - - 14|14 C1 predicted gene 16506 protein-coding 67371 Mm.64104 NM_026113 ENSMUSG00000019837 Gtf3c6 2410016F19Rik|AU019813 - 10|10 B1 general transcription factor IIIC, polypeptide 6, alpha protein-coding 258608 Mm.377590 NM_146615 ENSMUSG00000051095 Olfr986 MOR104-3 - 9|9 A5.1 olfactory receptor 986 protein-coding 13304 Del(3)48H Del48H - - deletion, Chr 3, Harwell 48 other 667562 Gm8704 EG667562 - 14 C2|14 glutamate oxaloacetate transaminase 2, mitochondrial pseudogene pseudo 108168114 XR_001781066 ENSMUSG00000095847 LOC108168114 - - 13 B3 60S ribosomal protein L9 pseudogene pseudo 100125851 Ltsw1 Ltw1 - - low testis weight 1 unknown 100040229 Gm15353 - - 8|8 A1.1 predicted gene 15353 protein-coding 279499 Mm.67628 NM_177791 ENSMUSG00000051648 Kctd19 4922504H04Rik - 8|8 D3 potassium channel tetramerisation domain containing 19 protein-coding 667977 Mm.441651 NM_001081032 ENSMUSG00000073402 Gm8909 EG667977|H2-Tw5l|H2-gs17 - 17 B1|17 predicted gene 8909 protein-coding 85122 D4Mit139 - - 4 29.65 cM DNA segment, Chr 4, Massachusetts Institute of Technology 139 unknown 243262 Mm.105369 NM_145153 ENSMUSG00000053765 Oas1f - - 5 F|5 60.64 cM 2'-5' oligoadenylate synthetase 1F protein-coding 60911 D8Mit88 - - 8 61.66 cM DNA segment, Chr 8, Massachusetts Institute of Technology 88 unknown 210274 Mm.483624 NM_001081370 ENSMUSG00000037541 Shank2 ProSAP1|mKIAA1022 - 7|7 F5 SH3 and multiple ankyrin repeat domains 2 protein-coding 61870 D1Mit348 - - 1 57.92 cM DNA segment, Chr 1, Massachusetts Institute of Technology 348 unknown 60957 DXMit84 - - X 47.36 cM DNA segment, Chr X, Massachusetts Institute of Technology 84 unknown 105244561 Gm40154 - - 3|3 predicted gene, 40154 ncRNA 104799 Mm.208750 NM_134044 ENSMUSG00000021038 Vipas39 6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39 - 12|12 D2 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog protein-coding 116909 Cts7-ps Cts1|Cts1-ps - 13 B2|13 32.74 cM cathepsin 7, pseudogene pseudo 105245007 Gm40521 - - 9|9 predicted gene, 40521 ncRNA 11628 Mm.391503 NM_009645 ENSMUSG00000040627 Aicda Aid|Arp2 - 6|6 F1 activation-induced cytidine deaminase protein-coding 21898 Mm.38049 NM_021297 ENSMUSG00000039005 Tlr4 Lps|Ly87|Ran/M1|Rasl2-8 - 4 C1|4 34.66 cM toll-like receptor 4 protein-coding 329504 Mm.219449 NM_177846 ENSMUSG00000074890 Lcmt2 D330024M17|Tyw4 - 2|2 E5 leucine carboxyl methyltransferase 2 protein-coding 13291 Del(16)34H Del34H - - deletion, Chr 16, Harwell 34 other 103968 Mm.254917 NM_175640 ENSMUSG00000030546 Plin1 6030432J05Rik|Peri|Plin - 7|7 D2 perilipin 1 protein-coding 234847 Mm.292075 NM_153176 ENSMUSG00000000738 Spg7 AI452278|AU015315|Cmar|PGN - 8|8 E1 SPG7, paraplegin matrix AAA peptidase subunit protein-coding 100036361 Lbn8 LBN9.1 - 9 71.55 cM long bones 8 unknown 12729 Mm.21482 NM_023671 ENSMUSG00000025439 Clns1a 2610036D06Rik|2610100O04Rik|Clci|Clcni|ICLN - 7 E1|7 53.57 cM chloride channel, nucleotide-sensitive, 1A protein-coding 100014 AA673240 - - - expressed sequence AA673240 unknown 16329 Mm.917 NM_008384 ENSMUSG00000026102 Inpp1 2300002C06Rik|AV137389 - 1 C1.1|1 26.99 cM inositol polyphosphate-1-phosphatase protein-coding 669582 Gm13359 - - 2|2 A3 calcyclin binding protein pseudogene pseudo 108167439 XR_001778177 Gm29328 - - 7 C|7 predicted gene 29328 ncRNA 100048896 Mm.475058 F630040L22Rik - - - RIKEN cDNA F630040L22 gene unknown 22359 Mm.4141 NM_013703 ENSMUSG00000024924 Vldlr AA408956|AI451093|AW047288 - 19 C1|19 21.77 cM very low density lipoprotein receptor protein-coding 100417385 Gm18583 - - 11|11 B1.2 nuclear receptor coactivator 4 pseudogene pseudo 60729 DXMit85 - - X 8.3 cM DNA segment, Chr X, Massachusetts Institute of Technology 85 unknown 78341 Mm.442123 2900016J10Rik - - 12|12 RIKEN cDNA 2900016J10 gene protein-coding 27639 D13Die27 - - 13 53.04 cM DNA segment, Chr 13, Dietrich 27 unknown 75193 XR_873482 4930526F13Rik - - 13|13 B1 RIKEN cDNA 4930526F13 gene ncRNA 102466992 NR_106008 ENSMUSG00000098531 Mir7041 Gm27872|mmu-mir-7041 - 6|6 D2 microRNA 7041 ncRNA 629746 Mm.264954 NR_151744 Gm29688 - - 8|8 E2 predicted gene, 29688 ncRNA 102635627 XR_388674 Gm32915 - - 11 B1.3|11 predicted gene, 32915 ncRNA 100038460 Mm.447649 NR_046048 Gm10677 - - 9 A5.3|9 predicted gene 10677 ncRNA 74847 Mm.486538 NM_029105 ENSMUSG00000020332 Meikin 4930404A10Rik - 11|11 B1.3 meiotic kinetochore factor protein-coding 380934 Mm.393838 NR_045143 ENSMUSG00000115016 AA536875 Gm1591 - 14|14 E5 expressed sequence AA536875 ncRNA 217410 Mm.491136 NM_144551 ENSMUSG00000020601 Trib2 AW319517|TRB-2|TRB2 - 12|12 A1.1 tribbles pseudokinase 2 protein-coding 102632977 XR_882320 ENSMUSG00000100900 Gm28850 - - Y B|Y predicted gene 28850 ncRNA 70120 Mm.37486 NM_198246 ENSMUSG00000022792 Yars2 2210023C10Rik|tyrRS - 16|16 A2 tyrosyl-tRNA synthetase 2 (mitochondrial) protein-coding 14391 Mm.293266 NM_010249 ENSMUSG00000027361 Gabpb1 BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2 - 2 F1|2 61.76 cM GA repeat binding protein, beta 1 protein-coding 105246324 XR_876985 Gm41625 - - 17 E3|17 predicted gene, 41625 ncRNA 12722 Mm.454553 NM_009899 ENSMUSG00000056025 Clca3a1 Cacc|Clca1 - 3 H2|3 69.06 cM chloride channel accessory 3A1 protein-coding 360097 D17Jcs38 - - - DNA segment, Chr 17, John C. Schimenti 38 unknown 112151 Bwem1 - - 5 50.64 cM body weight day 30 males 1 unknown 102639552 XR_872356 Gm12111 - - 11 A4|11 19.14 cM predicted gene 12111 ncRNA 100035830 Mgdr1 - - 5 24.07 cM muscle Gapd decay rate 1 unknown 105244840 XR_872665 Gm40375 - - 12 A3|12 predicted gene, 40375 ncRNA 26404 Mm.172897 NM_009582 ENSMUSG00000023050 Map3k12 DLK|MUK|Zpk - 15|15 F3 mitogen-activated protein kinase kinase kinase 12 protein-coding 100416346 Gm18058 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 53320 Mm.269137 NM_016770 ENSMUSG00000001773 Folh1 GCP2|mopsm - 7|7 D3 folate hydrolase 1 protein-coding 62604 D13Mit139 - - 13 26.25 cM DNA segment, Chr 13, Massachusetts Institute of Technology 139 unknown 71780 Mm.29357 NM_023627 ENSMUSG00000019139 Isyna1 1300017C10Rik|AU018670 - 8|8 B3.3 myo-inositol 1-phosphate synthase A1 protein-coding 384386 Gm5306 EG384386 - 6|6 B3 ribosomal protein L7A pseudogene pseudo 108078 Mm.293626 NM_138648 ENSMUSG00000030162 Olr1 LOX-1|SR-EI|Scare1 - 6|6 F3 oxidized low density lipoprotein (lectin-like) receptor 1 protein-coding 105244629 XR_867949 Gm40210 - - 4 C6|4 predicted gene, 40210 ncRNA 102636960 Gm28071 - - 1 C4|1 protein RTF2 homolog pseudo 102635807 XR_379496 Gm33053 - - 9 B|9 predicted gene, 33053 ncRNA 100040467 Spin2f Gm2790 - X A3.1|X spindlin family, member 2F protein-coding 100039750 Gm2404 - - 5|5 G2 predicted gene 2404 pseudo 626342 Gm11972 - - 11|11 A1 predicted gene 11972 pseudo 102637895 XR_388590 Gm34591 - - 11 A5|11 predicted gene, 34591 ncRNA 62415 D14Mit210 - - - DNA segment, Chr 14, Massachusetts Institute of Technology 210 unknown 102632454 XR_387489 Gm30521 - - 1 G3|1 predicted gene, 30521 ncRNA 624765 Mm.469843 NM_001103368 ENSMUSG00000091888 Vmn2r80 EG624765 - 10|10 C1 vomeronasal 2, receptor 80 protein-coding 320088 Mm.212908 NR_015499 ENSMUSG00000097365 C030034L19Rik A130044O20Rik - 3|3 A1 RIKEN cDNA C030034L19 gene ncRNA 108168427 XR_001782716 Gm46665 - - 19 A|19 predicted gene, 46665 ncRNA 52799 D16Jhu11e - - - DNA segment, Chr 16, Johns Hopkins University 11, expressed unknown 232966 Mm.435485 NM_001029933 ENSMUSG00000068962 Zfp114 Gm1957|Zfp110 - 7|7 A3 zinc finger protein 114 protein-coding 102466788 NR_105986 ENSMUSG00000099200 Mir7019 Gm27947|mmu-mir-7019 - 4|4 D3 microRNA 7019 ncRNA 102638404 XR_375332 Gm34981 - - 2 H3|2 predicted gene, 34981 ncRNA 18221 Mm.69 NM_010948 ENSMUSG00000028851 Nudc SIG-92|Silg92 - 4|4 D2.3 nudC nuclear distribution protein protein-coding 102637735 Mm.368579 XR_382931 Gm34471 - - 13 D2.2|13 predicted gene, 34471 ncRNA 24044 Mm.286069 NM_022813 ENSMUSG00000040188 Scamp2 AI875466|Sc2 - 9|9 B secretory carrier membrane protein 2 protein-coding 102640128 Gm36269 - - 6|6 predicted gene, 36269 ncRNA 692118 Igkv13-61-1 gh33r - 6|6 C1 immunoglobulin kappa chain variable 13-61-1 pseudo 61368 D4Mit202 - - - DNA segment, Chr 4, Massachusetts Institute of Technology 202 unknown 76563 Mm.5904 NM_001081054 ENSMUSG00000019863 Qrsl1 2700038P16Rik|C80053|GatA - 10|10 B2 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 protein-coding 85085 DXMit74 - - X 34.81 cM DNA segment, Chr X, Massachusetts Institute of Technology 74 unknown 97213 C77137 - - - expressed sequence C77137 unknown 61182 D19Mit22 - - 19 7.16 cM DNA segment, Chr 19, Massachusetts Institute of Technology 22 unknown 100035371 Alpq3 - - 9 20.76 cM alcohol preference QTL 3 unknown 626000 Mm.318688 Ccnd3-ps - - 4|4 D3 cyclin D3, pseudogene pseudo 74840 Mm.29778 NM_029103 ENSMUSG00000032575 Manf 3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17 - 9 F1|9 57.98 cM mesencephalic astrocyte-derived neurotrophic factor protein-coding 105244776 XR_868523 Gm40328 - - 5 G1.1|5 predicted gene, 40328 ncRNA 21976 Mm.326089 NM_011624 ENSMUSG00000022779 Top3b - - 16|16 A3 topoisomerase (DNA) III beta protein-coding 100048979 Wtmq2 mQTL3 - - weight module QTL 2 unknown 665888 Gm7840 EG665888 - X|X A5 predicted gene 7840 pseudo 100502667 Gm19312 - - 19 A|19 11.25 cM splicing factor, arginine/serine-rich 13A-like pseudo 100038586 Mm.447871 Gm10330 - - - predicted gene 10330 unknown 105243949 Gm39657 - - 1|1 predicted gene, 39657 ncRNA 665553 Gm7684 EG665553 - 8|8 B3.3 membrane-associated ring finger (C3HC4) 5 pseudogene pseudo 105246922 XR_880437 Gm42117 - - 5 E3|5 predicted gene, 42117 ncRNA 61718 D5Mit302 - - 5 31.99 cM DNA segment, Chr 5, Massachusetts Institute of Technology 302 unknown 102467375 n-TSaga9 n-Ts9 - 4 A1|4 nuclear encoded tRNA serine 9 (anticodon AGA) tRNA 244179 Mm.189668 NM_198624 ENSMUSG00000051437 Ubqlnl 4922504M18Rik|Gm490 - 7|7 E3 ubiquilin-like protein-coding 258971 Mm.389308 NM_146969 ENSMUSG00000075084 Olfr1243 MOR231-4 - 2|2 E1 olfactory receptor 1243 protein-coding 258898 Mm.223308 NM_146896 ENSMUSG00000057447 Olfr1205 MOR230-1|MOR230-3|Olfr1203|Olfr1205-ps1 - 2|2 E1 olfactory receptor 1205 protein-coding 62452 D11Mit360 - - 11 67.13 cM DNA Segment, Chr 11 Massachusetts Institute of Technology 360 unknown 110544 Ptma-rs4 - - - prothymosin alpha, related sequence 4 protein-coding 171464 Dbil5-ps - - 10|10 B2 diazepam binding inhibitor-like 5, pseudogene pseudo 102638906 Gm29300 - - Y|Y predicted gene 29300 protein-coding 110861 Evi5-rs1 - - - ecotropic viral integration site 5 related sequence 1 protein-coding 102467315 n-TGgcc14 n-Tg19 - 1 H3|1 nuclear encoded tRNA glycine 14 (anticodon GCC) tRNA 100417520 Gm18664 - - X|X C3 ring finger and WD repeat domain 2 pseudogene pseudo 114275 Manz11 QTL-C15.1 - - mandible size 11 unknown 21375 Mm.308525 NM_009322 ENSMUSG00000035033 Tbr1 - - 2 C1.3|2 35.56 cM T-box brain gene 1 protein-coding 111399 Emv29 Emv-29 - - endogenous ecotropic MuLV 29 other 27543 D15N6 54I15T7 - - DNA segment, Chr 15, NIH 6 unknown 62397 D17Mit63 - - 17 17.59 cM DNA segment, Chr 17, Massachusetts Institute of Technology 63 unknown 546071 Mm.250731 NM_199308 ENSMUSG00000031833 Mast3 BC024265|mKIAA0561 - 8|8 B3.3 microtubule associated serine/threonine kinase 3 protein-coding 234728 Mm.275341 NM_146215 ENSMUSG00000046441 Cmtr2 AU022703|C730036L12Rik|Ftsjd1|MTr2 - 8|8 D3 cap methyltransferase 2 protein-coding 63954 Mm.46023 NM_022020 ENSMUSG00000028996 Rbp7 1110002J23Rik|CRBP-III - 4|4 E2 retinol binding protein 7, cellular protein-coding 97637 C78038 - - - expressed sequence C78038 protein-coding 241324 Mm.392369 NM_001163566 ENSMUSG00000035403 Crb2 5930402A21|BC043114 - 2|2 B crumbs family member 2 protein-coding 108167707 XR_001779343 Gm46144 - - 1 E2.3|1 predicted gene, 46144 ncRNA 102640362 XR_375739 Gm36442 - - 3 E3|3 predicted gene, 36442 ncRNA 68603 Mm.34242 NM_026784 ENSMUSG00000027952 Pmvk 1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE - 3|3 F1 phosphomevalonate kinase protein-coding 14319 Mm.1776 NM_010239 ENSMUSG00000024661 Fth1 FHC|Fth|HFt|MFH - 19 A|19 6.23 cM ferritin heavy polypeptide 1 protein-coding 100038611 Gm10852 - - - predicted gene 10852 protein-coding 105246104 XR_876037 Gm41447 - - 16 B3|16 predicted gene, 41447 ncRNA 102632303 Mm.461557 Gm30414 - - 1|1 predicted gene, 30414 ncRNA 102635266 XR_373234 Gm32651 - - 1 A3|1 predicted gene, 32651 ncRNA 102635460 Gm32792 - - 1|1 predicted gene, 32792 ncRNA 66961 Mm.281895 NR_003513 ENSMUSG00000092274 Neat1 2310043N10Rik|VINC - 19|19 A nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 100040648 Gm13390 - - 2|2 A1 predicted gene 13390 protein-coding 327988 Mm.347746 NM_177800 Gm9975 C730049P21 - 11 C|11 predicted gene 9975 ncRNA 108167917 XR_001780284 Gm46289 - - 11 C|11 predicted gene, 46289 ncRNA 21837 Tht TgN370Rpw - - thick tail unknown 100036309 Nsila3 - - 3 61.27 cM novelty/stress induced locomotor activation 3 unknown 104507 AU022238 - - - expressed sequence AU022238 unknown 320840 Mm.317293 NM_177274 ENSMUSG00000040037 Negr1 5330422G01Rik|KILON|Ntra - 3|3 H4 neuronal growth regulator 1 protein-coding 27928 D0Ffm2 1C7b - - DNA segment, Universitat Frankfurt, Frankfurt/Main 2 unknown 110604 Ril3 Ril-3 - - radiation-induced leukemia sensitivity 3 protein-coding 545156 Mm.82274 NM_177357 ENSMUSG00000061751 Kalrn 2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD - 16|16 B3 kalirin, RhoGEF kinase protein-coding 692245 Igkv12-46 Gm16849 - 6|6 C1 immunoglobulin kappa variable 12-46 other 100125257 Trbj2-3 Gm16974 - 6 19.7 cM|6 B1 T cell receptor beta joining 2-3 other 399578 8030447M02Rik - - - RIKEN cDNA 8030447M02 gene protein-coding 102640514 XR_875081 Gm36555 - - 15 B1|15 predicted gene, 36555 ncRNA 667230 Gm8526 EG667230 - 13|13 C3 predicted gene 8526 pseudo 77662 9030218A15Rik - - 3|3 RIKEN cDNA 9030218A15 gene protein-coding 330401 Mm.425352 NM_177412 ENSMUSG00000030126 Tmcc1 3632431M01Rik|mKIAA0779 - 6|6 E3 transmembrane and coiled coil domains 1 protein-coding 19414 Mm.18517 NM_009025 ENSMUSG00000031453 Rasa3 AI326412|C86362|E130011G04|GAPIII|hlb381|scat - 8 A1.1|8 6.29 cM RAS p21 protein activator 3 protein-coding 100417054 Gm18387 - - 12|12 A1.1 Sjogren syndrome antigen B pseudogene pseudo 20347 Mm.4083 NM_009153 ENSMUSG00000057969 Sema3b SemA|Semaa|sema5|semaV - 9 F1|9 58.31 cM sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B protein-coding 111965 Mltr8 - - - modified polytropic long terminal repeat containing proviral locus 8 other 102637674 XR_380009 Gm34425 - - 9 F4|9 predicted gene, 34425 ncRNA 665268 Mm.451475 NR_033522 ENSMUSG00000057818 1600029O15Rik - - 9|9 B ribosomal protein L17 pseudogene pseudo 77116 Mm.210405 NM_023858 ENSMUSG00000031918 Mtmr2 6030445P13Rik - 9|9 A1 myotubularin related protein 2 protein-coding 111642 Ms67 MMS67 - - minisatellites detected by probe MMS67 other 100101942 Trdv2-1 Gm10909 - 14 C2|14 T cell receptor delta variable 2-1 other 24108 Mm.140210 NM_023137 ENSMUSG00000035186 Ubd FAT10 - 17|17 B1 ubiquitin D protein-coding 170768 Mm.19669 NM_133232 ENSMUSG00000026773 Pfkfb3 E330010H22Rik|iPFK-2|uPFK-2 - 2|2 A1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 320866 Mm.208777 C030015D19Rik - - 2|2 RIKEN cDNA C030015D19 gene protein-coding 13653 Mm.181959 NM_007913 ENSMUSG00000038418 Egr1 A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr - 18 B1|18 18.76 cM early growth response 1 protein-coding 17706 ATP8 - - - ATP synthase F0 subunit 8 protein-coding 102635773 XR_383676 Gm33025 - - 14 E1|14 predicted gene, 33025 ncRNA 99505 AA517742 - - - expressed sequence AA517742 unknown 50774 Mm.389993 NM_015808 ENSMUSG00000066100 Krtap5-1 - - 7|7 F5 keratin associated protein 5-1 protein-coding 62571 D12Mit146 - - 12 14.08 cM DNA segment, Chr 12, Massachusetts Institute of Technology 146 unknown 61523 D8Mit165 - - 8 58.5 cM DNA segment, Chr 8, Massachusetts Institute of Technology 165 unknown 13315 Del(5)68H Del68H - - deletion, Chr 5, Harwell 68 other 110120 Rasl2-3 - - - RAS-like, family 2, locus 3 protein-coding 100041958 XM_017316321 ENSMUSG00000096904 Gm3591 - - 14 A1|14 predicted gene 3591 protein-coding 66495 Mm.2033 NM_025597 ENSMUSG00000026032 Ndufb3 2700033I16Rik|CI-B12 - 1|1 C1.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 protein-coding 107795 TelXp - - - telomeric sequence, Chr X, centromere end protein-coding 269389 Mm.207709 NM_001098799 ENSMUSG00000074607 Tox2 AI851523|AV026525|BI987407|Gcx1|RxHMG1 - 2 H2|2 TOX high mobility group box family member 2 protein-coding 111505 Xmmv50 Xmmv-50|Xp-9 - - xenotropic-MCF leukemia virus 50 other 62115 D12Mit80 - - 12 60.13 cM DNA segment, Chr 12, Massachusetts Institute of Technology 80 unknown 622432 Gm6322 EG622432 - X|X F1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100041223 Mm.458582 NM_001160141 ENSMUSG00000093848 Gm20865 - - Y|Y A2 predicted gene, 20865 protein-coding 230718 Mm.354635 NM_001085502 ENSMUSG00000054958 Nt5c1a Cn1a|Gm49 - 4|4 D2.2 5'-nucleotidase, cytosolic IA protein-coding 100861734 Gm21173 - - Y|Y predicted gene, 21173 protein-coding 76499 Mm.222272 NM_029633 ENSMUSG00000033392 Clasp2 1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627 - 9|9 F3 CLIP associating protein 2 protein-coding 101056061 Gm29770 - - 17 C|17 enhancer of rudimentary homolog pseudo 100039036 Rps8-ps2 Gm14289 - 2|2 H4 ribosomal protein S8, pseudogene 2 pseudo 72379 2210409O19Rik - - 18|18 RIKEN cDNA 2210409O19 gene protein-coding 69432 NR_130985 ENSMUSG00000097716 1700026J14Rik - - 6|6 B2.3 RIKEN cDNA 1700026J14 gene ncRNA 230398 Mm.377246 NM_206867 ENSMUSG00000078355 Ifna16 BC114392|Gm13280|Ifna6T|Ifnat6 - 4 C4|4 interferon alpha 16 protein-coding 317653 Mm.247377 NM_174866 ENSMUSG00000044737 Klk14 GK14 - 7 B3|7 28.26 cM kallikrein related-peptidase 14 protein-coding 492902 Hbnr3 Hpnr3 - - Heligmosomoides bakeri nematode resistance 3 unknown 27766 273G21.T7 - - - DNA segment, 273G21.T7 (Roswell Park) unknown 233879 Mm.444143 NM_001039645 ENSMUSG00000046378 Asphd1 A830007L07Rik|Gm168 - 7|7 F3 aspartate beta-hydroxylase domain containing 1 protein-coding 71613 Mm.98139 NR_040499 ENSMUSG00000086653 9130015L21Rik - - 2|2 H2 RIKEN cDNA 9130015L21 gene ncRNA 16449 Mm.22398 NM_013822 ENSMUSG00000027276 Jag1 ABE2|Gsfabe2|Htu|Ozz|Ser-1 - 2 F3|2 67.73 cM jagged 1 protein-coding 66815 Mm.31056 NM_025779 ENSMUSG00000027994 Mcub 9030408N13Rik|Ccdc109b - 3|3 G3 mitochondrial calcium uniporter dominant negative beta subunit protein-coding 383258 Mm.461682 NM_001104582 ENSMUSG00000091504 Vmn2r118 EG383258|EG668547|Vmn2r119 - 17|17 C vomeronasal 2, receptor 118 protein-coding 102638248 XR_385587 Gm34857 - - 17 B3|17 predicted gene, 34857 ncRNA 110724 Cnbpl2 - - - cellular nucleic acid binding protein-like 2 protein-coding 100418214 Gm19077 - - 15|15 D1 ribosome production factor 2 homolog pseudogene pseudo 55989 Mm.220367 NM_018868 ENSMUSG00000026020 Nop58 MSSP|Nol5|SIK|nop5 - 1|1 C2 NOP58 ribonucleoprotein protein-coding 75640 XR_880590 ENSMUSG00000104538 1700016B01Rik Gm42491 - 5|5 F RIKEN cDNA 1700016B01 gene ncRNA 216551 Mm.76694 NM_173752 ENSMUSG00000042363 Lgalsl 1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla - 11 A3.1|11 13.53 cM lectin, galactoside binding-like protein-coding 77736 6720460K10Rik - - 2|2 RIKEN cDNA 6720460K10 gene protein-coding 621269 Actg-ps1 EG621269|Gm1841|Gm6208 - 8|8 B1.1 actin, gamma, pseudogene 1 pseudo 62853 D12Mit192 - - 12 33.52 cM DNA segment, Chr 12, Massachusetts Institute of Technology 192 unknown 102637809 XR_377319 Gm34527 - - 6 A1|6 predicted gene, 34527 ncRNA 53914 Tallbcr - - - T cell acute lymphoblastic leukemia breakpoint cluster region protein-coding 108168894 XR_001783968 Gm46822 - - 3 G1|3 predicted gene, 46822 ncRNA 105244321 XR_866809 Gm39955 - - 2 G2|2 predicted gene, 39955 ncRNA 320092 Mm.482524 NR_015502 ENSMUSG00000053279 E030003E18Rik 1700127G21Rik - 19|19 B RIKEN cDNA E030003E18 gene ncRNA 226977 Mm.28521 NM_146107 ENSMUSG00000037351 Actr1b 2310066K23Rik|AA960180|AI851923|Arp1b - 1|1 B ARP1 actin-related protein 1B, centractin beta protein-coding 100504066 LOC100504066 - - X|X D 60S ribosomal protein L9 pseudo 26443 Mm.30210 NM_011968 ENSMUSG00000021024 Psma6 IOTA - 12|12 C1 proteasome (prosome, macropain) subunit, alpha type 6 protein-coding 111961 Csn - - - casein gene family, alpha, beta, gamma, delta/epsilon, kappa other 780939 Ighv1-58 Gm16633 - 12|12 F2 immunoglobulin heavy variable 1-58 other 67052 Mm.225956 NM_023294 ENSMUSG00000024056 Ndc80 2610020P18Rik|AV139730|HEC|HEC1|Kntc2 - 17|17 E1.3 NDC80 kinetochore complex component protein-coding 192101 Stheal4 - - 4 50.04 cM soft tissue heal 4 unknown 232339 Mm.276116 NM_001081112 ENSMUSG00000007827 Ankrd26 5730521P14Rik|BC008111|mKIAA1074 - 6|6 F1 ankyrin repeat domain 26 protein-coding 548632 Mm.483143 BC023719 - - - cDNA sequence BC023719 protein-coding 624701 Gm12497 - - 3|3 F2.3 predicted pseudogene 12497 pseudo 259094 Olfr588-ps1 MOR6-1 - 7|7 E3 olfactory receptor 588, pseudogene 1 pseudo 100479 Mm.330279 BB131254 - - - expressed sequence BB131254 protein-coding 12750 Mm.239354 NM_007714 ENSMUSG00000020385 Clk4 AI987988|C85119 - 11|11 B1.3 CDC like kinase 4 protein-coding 62368 D4Mit362 - - 4 79.08 cM DNA segment, Chr 4, Massachusetts Institute of Technology 362 unknown 73090 Mm.84622 NM_028434 ENSMUSG00000030385 2900092C05Rik - - 7|7 A1 RIKEN cDNA 2900092C05 gene protein-coding 100035186 Bw22 - - - body weight QTL 22 unknown 21286 T(9;17)10Ad T10Ad - - reciprocal translocation, Chr 9 and 17, Adler 10 other 85209 D12Mit115 - - 12 56.7 cM DNA segment, Chr 12, Massachusetts Institute of Technology 115 unknown 69890 Mm.475652 NM_027248 ENSMUSG00000049295 Zfp219 2010302A17Rik|Znf219 - 14|14 C2 zinc finger protein 219 protein-coding 670124 Gm12468 - - 4|4 B2 predicted gene 12468 pseudo 14728 Mm.34408 NM_013532 ENSMUSG00000062593 Lilrb4a CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49 - 10 B3|10 25.5 cM leukocyte immunoglobulin-like receptor, subfamily B, member 4A protein-coding 85224 D11Mit262 - - 11 47.09 cM DNA segment, Chr 11, Massachusetts Institute of Technology 262 unknown 545443 Olfr1177-ps MOR174-19|Olfr1177 - 2|2 D olfactory receptor 1177, pseudogene pseudo 100034853 Alaa1 - - - alopecia areata unknown 53374 Mm.12866 NM_016803 ENSMUSG00000057337 Chst3 C6ST|C6ST-1|GST-0 - 10|10 B4 carbohydrate (chondroitin 6/keratan) sulfotransferase 3 protein-coding 66071 Mm.29553 NM_023154 ENSMUSG00000064254 Ethe1 0610025L15Rik|Hsco - 7|7 A3 ethylmalonic encephalopathy 1 protein-coding 105246594 Gm41864 - - 19|19 predicted gene, 41864 ncRNA 111609 Xmv29 Xmv-29 - - xenotropic murine leukemia virus 29 other 493048 Derms - - - dermatitis susceptibility unknown 52978 3a4 - - - DNA segment, 3a4 unknown 100040475 Mm.329196 Gm2795 - - 1 A5|1 predicted gene 2795 unknown 102638664 XM_006523134 Gm35174 - - 16 C3.3|16 predicted gene, 35174 protein-coding 54403 Mm.41044 NM_018760 ENSMUSG00000060961 Slc4a4 AI835705|NBC|NBC1 - 5|5 E1 solute carrier family 4 (anion exchanger), member 4 protein-coding 102633943 XR_001779177 Gm31642 - - 9 B|9 predicted gene, 31642 ncRNA 627858 Gm6799 EG627858 - 1|1 C1.1 predicted gene 6799 pseudo 102639117 XM_006527538 ENSMUSG00000096872 LOC102639117 - - 19 A secretoglobin family 2A member 2-like protein-coding 654798 Mm.444886 XR_871131 D030055H07Rik - - 9|9 F1 RIKEN cDNA D030055H07 gene ncRNA 627717 Gm6781 EG627717 - 14|14 A2 farnesyl diphosphate farnesyl transferase 1 pseudogene pseudo 57438 Mm.260635 NM_020575 ENSMUSG00000026977 March7 Axo|Axot|Gtrgeo17 - 2|2 C1.1 membrane-associated ring finger (C3HC4) 7 protein-coding 73475 Mm.491040 NR_040471 ENSMUSG00000099378 1700067G17Rik - - 1|1 D RIKEN cDNA 1700067G17 gene ncRNA 66667 Mm.45272 NM_175111 ENSMUSG00000022849 Hspbap1 3830421G21Rik - 16|16 B3 Hspb associated protein 1 protein-coding 102466804 NR_106059 ENSMUSG00000099226 Mir7091 Gm27381|mmu-mir-7091 - X|X A7.3 microRNA 7091 ncRNA 108168456 LOC108168456 - - X E3 60S ribosomal protein L34 pseudogene pseudo 723914 NR_029956 ENSMUSG00000065450 Mir448 Mirn448|mir-448|mmu-mir-448 - X|X F2 microRNA 448 ncRNA 70537 Mm.462998 XR_373931 5730419F03Rik - - 1|1 RIKEN cDNA 5730419F03 gene ncRNA 630751 XM_003945749 LOC630751 - - - interferon-inducible GTPase 1-like protein-coding 404315 Mm.377936 NM_207555 ENSMUSG00000069998 Olfr372 MOR282-1 - 8|8 B3.3 olfactory receptor 372 protein-coding 66671 Mm.18474 NM_023243 ENSMUSG00000021548 Ccnh 6330408H09Rik|AI661354|AV102684|AW538719 - 13|13 C3 cyclin H protein-coding 108293 Nzv1 Nxv-1|Nxv1|Nzv-1 - - NZB virus 1 other 110135 Mm.30063 NM_181849 ENSMUSG00000033831 Fgb 2510049G14Rik - 3 E3|3 36.98 cM fibrinogen beta chain protein-coding 71473 Mm.90306 NR_040686 ENSMUSG00000079069 8430423G03Rik - - 5|5 G3 RIKEN cDNA 8430423G03 gene ncRNA 105943584 NM_001310016 Gm45927 Clk2-scamp3|TU52 - 3 F1|3 predicted gene, 45927 protein-coding 100463526 Gm17192 Hspd1-19p - 16 C1.3|16 36.29 cM heat shock protein 1 (chaperonin) pseudogene 19 pseudo 235504 Mm.46932 NM_172773 ENSMUSG00000049624 Slc17a5 4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD - 9|9 E1 solute carrier family 17 (anion/sugar transporter), member 5 protein-coding 27800 D2Dcr2 - - - DNA segment, Chr 2, Derry C. Roopenian 2 unknown 259061 Mm.377815 NM_147059 ENSMUSG00000057770 Olfr668 MOR34-3 - 7|7 E3 olfactory receptor 668 protein-coding 22055 n-THgtg3 Trnah3|n-Th3 - 2 E5|2 nuclear encoded tRNA histidine 3 (anticodon GTG) tRNA 243537 Mm.335669 NM_144940 ENSMUSG00000034456 Uroc1 AI265605|BC022133 - 6|6 D1 urocanase domain containing 1 protein-coding 105243236 XR_879009 Gm39210 - - 8 C2|8 predicted gene, 39210 ncRNA 54709 Mm.250874 NM_018799 ENSMUSG00000028798 Eif3i 36kDa|D4Ertd632e|Eif3s2|Trip1 - 4 D2.2|4 63.26 cM eukaryotic translation initiation factor 3, subunit I protein-coding 102638865 XR_381821 Gm35326 - - 12 E|12 predicted gene, 35326 ncRNA 102638804 XR_383319 ENSMUSG00000114774 Gm35281 - - 14 A3|14 predicted gene, 35281 ncRNA 629568 Gm6982 EG629568 - X|X C3 predicted gene 6982 pseudo 102465206 NR_105813 ENSMUSG00000099036 Mir378c Gm27930|mmu-mir-378c - 14|14 C1 microRNA 378c ncRNA 102635977 XR_373313 Gm33176 - - 1 B|1 predicted gene, 33176 ncRNA 20451 Mm.252110 NM_009182 ENSMUSG00000056812 St8sia3 AI847333|ST8SiaIII|Siat8c - 18|18 E1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 102635195 Gm32595 - - 3|3 predicted gene, 32595 ncRNA 100534373 Gm15833 - - 1|1 C1.1 eukaryotic translation initiation factor 4B pseudogene pseudo 547220 Cyp4a28-ps CYP_b|Cyp4a21|Cyp4a21-ps - 4|4 D1 cytochrome P450, family 4, subfamily a, polypeptide 28, pseudogene pseudo 102632504 LOC102632504 - - 1 A2 RING-box protein 2 pseudogene pseudo 102632809 XR_880034 Gm11205 - - 11 B5|11 47.02 cM predicted gene 11205 ncRNA 100036138 Pgia26 - - 3 48.13 cM proteoglycan induced arthritis 26 unknown 329188 Mm.291104 Gm816 - - 1|1 C4 predicted gene 816 protein-coding 30924 Mm.28341 NM_013913 ENSMUSG00000028553 Angptl3 hypl - 4 C6|4 45.6 cM angiopoietin-like 3 protein-coding 674214 XR_030504 ENSMUSG00000096237 Gm9615 - - 4 A5|4 predicted gene 9615 protein-coding 100417556 Gm12577 - - 4|4 B3 arginine/serine-rich coiled-coil 2 pseudogene pseudo 69276 Mm.26017 NM_027016 ENSMUSG00000027706 Sec62 3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1 - 3|3 A3 SEC62 homolog (S. cerevisiae) protein-coding 19465 Rb(10.15)23Lub Rb23Lub - - Robertsonian translocation, Chr 10 and 15, Lubeck 23 other 12544 Mm.1248 NM_009862 ENSMUSG00000000028 Cdc45 Cdc45l - 16 A3|16 11.63 cM cell division cycle 45 protein-coding 108536 Ms13-35 Ms13-Hf19 - - minisatellite 13-35 detected by M13 phage probe other 18399 Mm.30090 NM_008766 ENSMUSG00000024650 Slc22a6 NKT|Oat1|Orctl1|mOat1 - 19 A|19 5.44 cM solute carrier family 22 (organic anion transporter), member 6 protein-coding 259106 Mm.377848 NM_147102 ENSMUSG00000073973 Olfr552 MOR28-1 - 7|7 E3 olfactory receptor 552 protein-coding 68292 Mm.296158 NM_024222 ENSMUSG00000032437 Stt3b 1300006C19Rik|Simp - 9|9 F3 STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) protein-coding 77288 Mm.376571 NR_033569 9430021M05Rik - - 2|2 H2 RIKEN cDNA 9430021M05 gene ncRNA 387514 Mm.377921 NM_001001452 ENSMUSG00000046652 Tas2r143 Gm1404|Tas2r43|mt2r36 - 6|6 B2.1 taste receptor, type 2, member 143 protein-coding 102465638 NR_106022 ENSMUSG00000106470 Mir7055 mmu-mir-7055 - 7|7 B3 microRNA 7055 ncRNA 107574 Tcrg-C2 Gm16603|Trgc2 - 13|13 A2 T-cell receptor gamma, constant 2 other 670263 Gm14826 - - X|X C3 predicted gene 14826 pseudo 110120368 LOC110120368 - - - VISTA enhancer mm505 biological-region 100504263 Mm.379980 NM_001305136 ENSMUSG00000078894 2210418O10Rik Gm6182 - 2|2 H4 predicted gene 2210418O10Rik protein-coding 170734 Mm.155595 NM_133204 ENSMUSG00000058028 Zscan5b Zfg1|Zfp371 - 7|7 A1 zinc finger and SCAN domain containing 5B protein-coding 101956 AA516945 - - - expressed sequence AA516945 unknown 110284 Es27 Es-27 - - esterase 27, serum cholinesterase protein-coding 105247110 Gm42268 - - 4|4 predicted gene, 42268 ncRNA 245578 Mm.39691 NM_001081385 ENSMUSG00000034755 Pcdh11x PCDHX|PCDHX11|Pcdh11 - X|X E2 protocadherin 11 X-linked protein-coding 102391 Mm.482497 AA408954 - - - expressed sequence AA408954 unknown 52204 D6Ertd234e - - 6 25.75 cM DNA segment, Chr 6, ERATO Doi 234, expressed unknown 105246720 XR_878587 Gm41963 - - 1 F|1 predicted gene, 41963 ncRNA 105243266 XR_879134 Gm39234 - - 8 D2|8 predicted gene, 39234 ncRNA 109279990 LOC109279990 Mm729 - - VISTA enhancer mm729 biological-region 665863 Gm7831 EG665863 - 16|16 C3.3 predicted gene 7831 pseudo 110970 Ctsh-ps Ctsh-rs1 - - cathepsin H, pseudogene pseudo 61654 D7Mit285 - - 7 66.09 cM DNA segment, Chr 7, Massachusetts Institute of Technology 285 unknown 105244431 XR_867192 Gm40040 Gm42434 - 3 B|3 predicted gene, 40040 ncRNA 338403 Mm.23278 NM_177450 ENSMUSG00000056162 Cndp1 AI746433|Cn1 - 18|18 E4 carnosine dipeptidase 1 (metallopeptidase M20 family) protein-coding 19186 Mm.830 NM_011189 ENSMUSG00000022216 Psme1 AW413925|PA28a - 14 C3|14 28.19 cM proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) protein-coding 108628 Iap5rc15 - - - intracisternal A-type particle, U5 region, SINE repeat c-15 other 102639021 XM_011243933 LOC102639021 - - 12 A1.2 zinc finger protein 431-like protein-coding 110648 Mm.330081 NM_033652 ENSMUSG00000026686 Lmx1a Lmx1.1|dr|dreher|sst - 1 H2.3|1 75.08 cM LIM homeobox transcription factor 1 alpha protein-coding 16835 Mm.3213 NM_010700 ENSMUSG00000032193 Ldlr Hlb301 - 9 A3|9 7.87 cM low density lipoprotein receptor protein-coding 231507 Mm.34609 NM_139198 ENSMUSG00000029322 Plac8 C15|D5Wsu111e - 5 E4|5 48.49 cM placenta-specific 8 protein-coding 269718 Gm5050 EG269718 - 5|5 G2 ribosomal protein L7A pseudogene pseudo 100418256 Gm19102 - - 6|6 A2 succinate-Coenzyme A ligase, GDP-forming, beta subunit pseudogene pseudo 78158 Mm.78473 NR_108098 ENSMUSG00000085431 4930440I19Rik - - 2|2 C3 RIKEN cDNA 4930440I19 gene ncRNA 77132 Mm.194729 NR_033474 2810433D01Rik - - 11|11 E1 RIKEN cDNA 2810433D01 gene ncRNA 105245310 XR_001779659 Gm40785 - - 10 D2|10 predicted gene, 40785 ncRNA 74957 4930486N12Rik - - 7|7 RIKEN cDNA 4930486N12 gene protein-coding 210035 Mm.251075 NM_173732 ENSMUSG00000040195 Nemp1 Tmem194|Tmem194a - 10|10 D3 nuclear envelope integral membrane protein 1 protein-coding 20471 Mm.4645 NM_009189 ENSMUSG00000051367 Six1 BB138287 - 12 C3|12 30.34 cM sine oculis-related homeobox 1 protein-coding 666926 Mm.486382 NM_001164202 ENSMUSG00000058470 Gm8369 EG666926 - 19|19 A predicted gene 8369 protein-coding 85059 D2Mit13 - - 2 55.67 cM DNA segment, Chr 2, Massachusetts Institute of Technology 13 unknown 102636090 XR_881085 Gm33259 - - 4 A1|4 predicted gene, 33259 ncRNA 110681 Ssic1 - - - susceptibility to small intestinal cancer 1 protein-coding 193079 Gm12332 - - 11|11 B5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100504048 Gm20033 - - 5|5 33.49 cM predicted gene, 20033 protein-coding 665036 Gm7456 EG665036 - 12 B3|12 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105242959 XR_882151 Gm39023 - - 7 C|7 predicted gene, 39023 ncRNA 329970 Mm.404705 NR_151508 Gm13016 A830025M08 - 4|4 D3 predicted gene 13016 ncRNA 52150 Mm.24877 NM_001033525 ENSMUSG00000046410 Kcnk6 D7Ertd764e|Toss|Twik2 - 7 B1|7 16.94 cM potassium inwardly-rectifying channel, subfamily K, member 6 protein-coding 94352 Mm.116714 NM_033325 ENSMUSG00000034205 Loxl2 1110004B06Rik|4930526G11Rik|9430067E15Rik - 14|14 D2 lysyl oxidase-like 2 protein-coding 546268 XM_006527716 Gm5932 EG546268 - X|X A1.3 predicted gene 5932 protein-coding 100416698 Gm18205 - - 7|7 A1 zinc finger protein 287 pseudogene pseudo 69404 Mm.250438 Prss23os 1700019G06Rik|4930479H08Rik - 7|7 49.91 cM protease, serine 23, opposite strand unknown 11800 Mm.181824 NM_007466 ENSMUSG00000027193 Api5 AAC-11|AI196452|API-5 - 2|2 E1 apoptosis inhibitor 5 protein-coding 100035751 Pcyts1 - - - plasmacytoma susceptibility 1 unknown 17444 Mm.12947 NM_010815 ENSMUSG00000042351 Grap2 GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38 - 15|15 E1 GRB2-related adaptor protein 2 protein-coding 78074 6720484C15Rik - - - RIKEN cDNA 6720484C15 gene protein-coding 105245252 XR_001779835 Gm40731 - - 10 C1|10 predicted gene, 40731 ncRNA 72000 Mm.334314 NM_028050 ENSMUSG00000025500 Lmntd2 1600016N20Rik - 7|7 F5 lamin tail domain containing 2 protein-coding 75858 Mm.359463 NR_001585 ENSMUSG00000089871 Speer4cos 4930568L21Rik|SPEER-7|Speer7-ps|Speer7-ps1 - 5|5 A2 spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript pseudo 21638 Mm.246559 Tcrg-V4 AI528624|TRGV4|Vg4 - 13|13 A2 T cell receptor gamma, variable 4 other 100418408 Gm14647 - - X|X A6 predicted gene 14647 pseudo 404322 Mm.355016 NM_207560 ENSMUSG00000062103 Olfr924 MOR171-27P|MOR171-47|Olfr1520-ps1 - 9|9 A5.1 olfactory receptor 924 protein-coding 105245487 XR_873355 Gm40935 - - 13 A5|13 predicted gene, 40935 ncRNA 102633782 XM_017321248 Gm31526 - - 5 E5|5 predicted gene, 31526 protein-coding 75829 Mm.159593 NM_029459 ENSMUSG00000031411 Prame 4930534P07Rik - X|X F1 preferentially expressed antigen in melanoma protein-coding 18948 Mm.57030 NM_008890 ENSMUSG00000038216 Pnmt Pent - 11|11 D phenylethanolamine-N-methyltransferase protein-coding 75514 Mm.116929 NM_001200013 ENSMUSG00000054727 1700013H16Rik Slx2|Xlr6 - X|X A5 RIKEN cDNA 1700013H16 gene protein-coding 19872 NR_004419 ENSMUSG00000065701 Rny1 - - 6 B2.3|6 22.94 cM RNA, Y1 small cytoplasmic, Ro-associated ncRNA 404407 Olfr587-ps1 MOR7-3_p - 7|7 E3 olfactory receptor 587, pseudogene 1 pseudo 17912 Mm.3390 NM_010863 ENSMUSG00000018417 Myo1b AA406997|MIH-L|MMIa - 1 C1.1|1 26.58 cM myosin IB protein-coding 100042251 Gm3749 - - 16|16 A1 zinc finger, BED domain containing 4 pseudogene pseudo 110095 Mm.256926 NM_133198 ENSMUSG00000021069 Pygl - - 12 C2|12 29.01 cM liver glycogen phosphorylase protein-coding 320104 B130065D12Rik - - 19|19 RIKEN cDNA B130065D12 gene protein-coding 100126080 Mtgq3 Bwnd2wk4|Bwnd4wk3|Bwnd5wk4|Bwnd6wk3 - - multiple trait growth QTL 3 unknown 434616 Gm5630 EG434616 - 14|14 A2 geranylgeranyl diphosphate synthase 1 pseudogene pseudo 73033 Mm.44901 2900072N19Rik - - 2|2 RIKEN cDNA 2900072N19 gene protein-coding 27416 Mm.20845 NM_013790 ENSMUSG00000022822 Abcc5 2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5 - 16 A3|16 12.41 cM ATP-binding cassette, sub-family C (CFTR/MRP), member 5 protein-coding 111924 Iap3rb10 - - - intracisternal A-type particle, U3 region, SINE repeat b-10 other 493061 Hsl1 - - 2 48.5 cM hyperoxia susceptibility locus 1 unknown 219249 Mm.35168 NM_172605 ENSMUSG00000022019 Tdrd3 4732418C03Rik|6720468N18 - 14|14 E1 tudor domain containing 3 protein-coding 102638819 XR_390184 Gm35294 - - 4 D2.2|4 predicted gene, 35294 ncRNA 102635958 XR_867793 ENSMUSG00000092522 Gm20389 - - 3 H4|3 79.29 cM predicted gene 20389 ncRNA 209456 Mm.287450 NM_173378 ENSMUSG00000026510 Trp53bp2 53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550 - 1 H5|1 84.93 cM transformation related protein 53 binding protein 2 protein-coding 102636462 LOC102636462 - - 13 B3 protein FAM220A-like pseudo 790909 Mm.404626 NR_046047 ENSMUSG00000087668 Gm11186 - - 11 B1.3|11 predicted gene 11186 ncRNA 105247135 Mm.412936 XR_881288 Gm12514 - - 4 B2|4 29.59 cM predicted gene 12514 ncRNA 105246478 Gm41763 - - 18|18 predicted gene, 41763 ncRNA 20355 Mm.270543 NM_011350 ENSMUSG00000000627 Sema4f Sema W - 6 C3|6 35.94 cM sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain protein-coding 21222 T(5;7)30Ad T30Ad - - reciprocal translocation, Chr 5 and 7, Adler 30 other 435376 Mm.292579 NM_001145879 ENSMUSG00000078958 Atp6ap1l EG435376 - 13|13 C3 ATPase, H+ transporting, lysosomal accessory protein 1-like protein-coding 414073 Mm.20120 XR_876845 BC040756 - - 17 C|17 cDNA sequence BC040756 ncRNA 57294 Mm.270283 NM_027015 ENSMUSG00000090733 Rps27 3200001M24Rik - 3|3 F1 ribosomal protein S27 protein-coding 106021 Mm.251548 NM_134097 ENSMUSG00000036822 Topors AW105885|LUN|TP53BPL|p53BP3/LUN - 4|4 A5 topoisomerase I binding, arginine/serine-rich protein-coding 230596 Mm.157534 NM_172697 ENSMUSG00000063800 Prpf38a 2410002M20Rik - 4|4 C7 PRP38 pre-mRNA processing factor 38 (yeast) domain containing A protein-coding 100416259 Gm12654 - - 4|4 C5 ribosomal protein L8 pseudogene pseudo 102631506 Gm29828 - - 17|17 predicted gene, 29828 ncRNA 109515 Alcp16 - - - alcohol preference locus 16, female specific unknown 492853 Sluc19 - - 7 70.29 cM susceptibility to lung cancer 19 unknown 102467462 n-TAtgc8 n-Ta37 - X F1|X nuclear encoded tRNA alanine 8 (anticodon TGC) tRNA 28188 D16Ium12e D16Ium12 - - DNA segment, Chr 16, Indiana University Medical 12, expressed unknown 22249 Mm.128892 NM_021468 ENSMUSG00000028456 Unc13b Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2 - 4|4 A5 unc-13 homolog B (C. elegans) protein-coding 93724 Mm.247203 NM_033595 ENSMUSG00000102428 Pcdhga12 Pcdh13|pc2c - 18|18 B3 protocadherin gamma subfamily A, 12 protein-coding 75063 Mm.120271 4930511M18Rik - - 3|3 RIKEN cDNA 4930511M18 gene unknown 66756 Mm.133623 NM_025747 ENSMUSG00000031631 Cfap97 1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430 - 8 B1.1|8 26.16 cM cilia and flagella associated protein 97 protein-coding 109678 Os 94-A|94-K|PlmTgN(Pgk1)1Ddp|PlmTgN(Pgk1)2Ddp - - oligosyndactylism unknown 109433680 LOC109433680 - - - Ex4r enhancer intronic to Bmp5 biological-region 105243277 XR_879156 Gm39241 - - 8 D3|8 predicted gene, 39241 ncRNA 104397 Gtig1 R108 - - gene trap integration gene 1 unknown 62845 D12Mit213 - - 12 31.95 cM DNA segment, Chr 12, Massachusetts Institute of Technology 213 unknown 620025 Gm6125 EG620025 - 12 B2|12 zinc finger, BED domain containing 4 pseudogene pseudo 20662 Mm.60975 NM_009231 ENSMUSG00000024241 Sos1 4430401P03Rik|9630010N06|AI449023 - 17 E3|17 50.67 cM SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 21982 Mm.790 NM_011626 ENSMUSG00000029234 Tmem165 AV026557|Tpardl|Tparl|pFT27 - 5 C3.3|5 40.56 cM transmembrane protein 165 protein-coding 100502861 Mm.335550 NM_028384 ENSMUSG00000079235 Ccdc13 2900041A11Rik|Gm188 - 9|9 F4 coiled-coil domain containing 13 protein-coding 72567 Mm.294783 NM_153787 ENSMUSG00000037608 Bclaf1 2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164 - 10|10 A3 BCL2-associated transcription factor 1 protein-coding 433215 Mm.437186 NM_001111317 ENSMUSG00000047733 Tmem262 - - 19|19 A transmembrane protein 262 protein-coding 50934 Mm.276831 NM_016972 ENSMUSG00000022180 Slc7a8 AA408822|LAT2 - 14|14 C2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 protein-coding 112130 Szs3 Kasz3 - 11 71.83 cM seizure susceptibility 3 unknown 100417711 Gm18775 - - 1|1 A3 NLR family, pyrin domain containing 4F pseudogene pseudo 102640192 Mm.443021 XR_881807 Gm15510 - - 7 A1|7 2.92 cM predicted gene 15510 ncRNA 66654 Mm.442255 NM_025687 ENSMUSG00000032065 Tex12 5730518K06Rik - 9|9 A5.3 testis expressed gene 12 protein-coding 102638022 Gm34690 - - 18|18 predicted gene, 34690 ncRNA 20822 Mm.40370 NM_013835 ENSMUSG00000018199 Trove2 1810007I17Rik|A530054J02Rik|AI646302|SS-A/Ro|Ssa|Ssa2 - 1 F|1 62.54 cM TROVE domain family, member 2 protein-coding 73618 Mm.159039 XR_870147 1700128E19Rik - - 8|8 A1.1 RIKEN cDNA 1700128E19 gene unknown 99035 Mm.13808 NM_145921 ENSMUSG00000026645 Olah AI607300|E230009B14Rik|Thedc1 - 2|2 A1 oleoyl-ACP hydrolase protein-coding 666639 Gm8208 EG666639 - 15 D3|15 INO80 complex subunit C pseudogene pseudo 100417846 Gm12435 - - 4|4 B1 heterogeneous nuclear ribonucleoprotein F pseudogene pseudo 102640635 XR_390814 Gm26615 - - 4 D2.3|4 predicted gene, 26615 ncRNA 105245048 XR_872931 ENSMUSG00000113362 Gm40557 - - 12 E|12 predicted gene, 40557 ncRNA 102635758 XR_391461 Gm33015 - - 7 B4|7 predicted gene, 33015 ncRNA 109279915 LOC109279915 Mm145 - - VISTA enhancer mm145 biological-region 56576 446o7T7 - - - DNA segment, 446o7T7 unknown 13039 Mm.930 NM_009984 ENSMUSG00000021477 Ctsl 1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt - 13 B3|13 33.26 cM cathepsin L protein-coding 75464 Mm.250541 1700011D18Rik - - 7|7 RIKEN cDNA 1700011D18 gene protein-coding 105244939 Gm40461 - - 8|8 predicted gene, 40461 ncRNA 12590 Mm.144448 NM_009880 ENSMUSG00000024619 Cdx1 Cdx|Cdx-1 - 18 E1|18 34.41 cM caudal type homeobox 1 protein-coding 108168073 LOC108168073 - - 13 A3.2 60S ribosomal protein L17-like pseudo 243382 Mm.396893 NM_175523 ENSMUSG00000037826 Ppm1k 2900063A19Rik|A930026L03Rik|PP2Cm - 6|6 B3 protein phosphatase 1K (PP2C domain containing) protein-coding 19309 Mm.27806 NM_011224 ENSMUSG00000032648 Pygm AI115133|PG - 19 A|19 4.53 cM muscle glycogen phosphorylase protein-coding 111903 Xltr5 - - - xenotropic long terminal repeat-containing proviral locus 5 other 105246089 Mm.390905 NR_155420 C730014E05Rik - - 16|16 B1 RIKEN cDNA C730014E05 gene ncRNA 97485 Mm.442011 C88045 - - - expressed sequence C88045 protein-coding 105243585 XM_011249869 Gm39469 - - 9 F4|9 predicted gene, 39469 protein-coding 61900 D2Mit435 - - 2 44.99 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 435 unknown 101023 Mm.45033 NM_175311 ENSMUSG00000043059 Zfp513 AW990386|D430028M17Rik|Znf513 - 5|5 B1 zinc finger protein 513 protein-coding 104259 Lyb5 Lyb-5 - - B-lymphocyte antigen 5 protein-coding 30944 Mm.103674 NM_013922 ENSMUSG00000044807 Zfp354c 5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218 - 11 B1.3|11 30.93 cM zinc finger protein 354C protein-coding 100042332 Mm.269766 NR_030682 2810410L24Rik - - 11|11 E2 RIKEN cDNA 2810410L24 gene ncRNA 102631675 Mm.118195 XR_387479 1700040K01Rik Gm29954 - 1 G3|1 RIKEN cDNA 1700040K01 gene ncRNA 76634 Mm.491052 NR_045461 ENSMUSG00000099384 1700110C19Rik - - 17|17 A1 RIKEN cDNA 1700110C19 gene ncRNA 98801 AA517830 - - - expressed sequence AA517830 unknown 16750 l4Rn1 l(4)1Rn|l(4)Rn1 - - lethal, Chr 4, Rinchik 1 unknown 107454 Rasl5-1 - - - RAS-like, family 5, locus 1 protein-coding 16129 Igk-V9 - - - immunoglobulin kappa chain variable 9 (V9) other 108168465 Gm14846 - - X A7.3|X 37.94 cM small nuclear ribonucleoprotein G pseudogene pseudo 319685 4732496C06Rik - - 7|7 RIKEN cDNA 4732496C06 gene protein-coding 100041811 Mm.479864 NM_001170955 ENSMUSG00000082211 Defa27 Gm15299 - 8|8 A2 defensin, alpha, 27 protein-coding 104069 Mm.200843 NM_033610 ENSMUSG00000034891 Sncb AI838531|betaSYN - 13 B1|13 29.28 cM synuclein, beta protein-coding 102634533 XR_388308 ENSMUSG00000079467 LOC102634533 - - 19 A uncharacterized LOC102634533 ncRNA 111535 Pmv10 Pmv-10 - - polytropic murine leukemia virus 10 other 100093648 Trnav-uac - - - transfer RNA valine (anticodon UAC) tRNA 402770 C130083A15Rik - - 7|7 RIKEN cDNA C130083A15 gene protein-coding 692176 Igkv14-118-2 bq9 - 6|6 C1 immunoglobulin kappa chain variable 14-118-2 pseudo 100038494 Mm.370447 NR_046061 ENSMUSG00000074885 Gm10782 - - 13 B1|13 predicted gene 10782 ncRNA 667952 Gm8894 EG667952|Myl6 - 14|14 C3 myosin light polypeptide 6 alkali smooth muscle and non-muscle protein, pseudogene pseudo 61466 D6Mit209 - - 6 32.56 cM DNA segment, Chr 6, Massachusetts Institute of Technology 209 unknown 102631933 XR_385738 Gm30140 - - 17 E1.3|17 predicted gene, 30140 ncRNA 20861 Mm.327618 NM_001082543 ENSMUSG00000071562 Stfa1 Stefin-3|Stf-3|Stf1|Stf3|Stfa3 - 16 B3|16 25.45 cM stefin A1 protein-coding 111875 Iap3rb8 - - - intracisternal A-type particle, U3 region, SINE repeat b-8 other 100038666 Mm.387373 NR_033539 ENSMUSG00000072834 Gm12298 - - 11 B3|11 predicted gene 12298 ncRNA 110905 Mapk3-rs1 Esrk1-rs|Prkm3-rs1 - - mitogen-activated protein kinase 3, related sequence 1 protein-coding 633596 Hmgn2l6 Gm15296 - X F2|X high-mobility group nucleosomal binding domain 2-like 6 pseudo 320015 Mm.450592 A130082J08Rik - - 13|13 RIKEN cDNA A130082J08 gene protein-coding 105245782 XR_001781294 Gm41176 - - 14 D1|14 predicted gene, 41176 ncRNA 69207 Mm.223946 NM_026989 ENSMUSG00000055436 Srsf11 0610009J05Rik|2610019N13Rik|BF642805|Sfrs11 - 3|3 H4 serine/arginine-rich splicing factor 11 protein-coding 621504 Gm6236 - - 3 A1|3 predicted gene 6236 pseudo 104797311 NR_128567 ENSMUSG00000105030 Gm38671 Mir9768|mmu-mir-9768 - 8|8 A1.1 predicted gene, 38671 ncRNA 69054 Mm.417838 NR_045472 ENSMUSG00000100844 1810007C17Rik - - 12|12 B3 RIKEN cDNA 1810007C17 gene ncRNA 52685 Mm.266885 NM_027987 ENSMUSG00000017309 Cd300lg 2310016B05Rik|Clm9|D11Ertd736e - 11 D|11 65.48 cM CD300 molecule like family member G protein-coding 100035867 Eae36 - - - experimental allergic encephalomyelitis susceptibility 36 unknown 77049 Mm.425601 XM_486266 ENSMUSG00000064299 4921528I07Rik - - 9|9 F3 RIKEN cDNA 4921528I07 gene protein-coding 21031 T(10;11)75H - - - reciprocal translocation, Chr 10 and 11, Harwell 75 other 100035294 Pgis1 - - 18 28.92 cM proteoglycan induced spondylitis 1 unknown 27618 D0Hgu9 - - - DNA segment, Human Genetics Unit 9 unknown 71004 Mm.475465 NM_001033527 ENSMUSG00000074580 4931440P22Rik - - 3|3 E1 RIKEN cDNA 4931440P22 gene ncRNA 105244326 XR_866853 Gm39959 - - 2 G3|2 predicted gene, 39959 ncRNA 108168084 XM_017315671 Gm46415 - - 13 B1|13 predicted gene, 46415 protein-coding 100417678 Gm18759 - - 13|13 D2.2 microfibrillar-associated protein 1B pseudogene pseudo 102631702 XR_387631 Gm29972 - - 5 F|5 predicted gene, 29972 ncRNA 67578 Mm.150462 NM_026251 ENSMUSG00000027233 Patl2 4930424G05Rik|Pat1a - 2 E5|2 protein associated with topoisomerase II homolog 2 (yeast) protein-coding 665416 Rps19-ps9 Gm10249 - 6 D1|6 ribosomal protein S19, pseudogene 9 pseudo 102465901 NR_106193 ENSMUSG00000098856 Mir8113 Gm27394|mmu-mir-8113 - 6|6 F2 microRNA 8113 ncRNA 382354 Gm5171 EG382354 - 10 A4|10 non-POU-domain-containing, octamer binding protein pseudogene pseudo 100793 AU015619 - - - expressed sequence AU015619 unknown 67647 Mm.171518 NM_001024470 ENSMUSG00000090394 4930523C07Rik - - 1|1 H1 RIKEN cDNA 4930523C07 gene protein-coding 14939 Mm.14874 NM_013542 ENSMUSG00000015437 Gzmb AI553453|CCP-1/C11|CCP1|Ctla-1|Ctla1|GZB - 14 C3|14 28.19 cM granzyme B protein-coding 102641705 Mm.491663 LOC102641705 - - - uncharacterized LOC102641705 ncRNA 111437 Emv35 Emv-35 - - endogenous ecotropic MuLV 35 other 100042927 Mm.327561 NM_001242947 ENSMUSG00000101819 H2al1b Gm14474 - X|X A1.1 H2A histone family member L1B protein-coding 111041 Rrm2-ps2 - - - ribonucleotide reductase M2 pseudogene 2 pseudo 100093688 Trnar-ccu - - - transfer RNA arginine (anticodon CCU) tRNA 53734 D17Leh9 D17Tu9 - - DNA segment, Chr 17, Lehrach 9 unknown 102639464 XR_384110 Gm35771 - - 15 D1|15 predicted gene, 35771 ncRNA 624124 Gm6472 EG624124 - X|X F3 ribosomal protein S7 pseudogene pseudo 102635129 XR_386108 Gm32547 - - 18 A2|18 predicted gene, 32547 ncRNA 100042756 Obox4-ps28 Gm10678 - 7|7 A2 oocyte specific homeobox 4, pseudogene 28 pseudo 102634453 Gm32033 - - Y|Y predicted gene, 32033 ncRNA 64245 NR_033779 ENSMUSG00000096759 Snord116l2 Pwcr1l2 - 7 B5|7 34.02 cM small nucleolar RNA, C/D box 116-like 2 snoRNA 545172 Rpl21-ps5 EG545172|Gm5810 - 16|16 C3.3 ribosomal protein L21, pseudogene 5 pseudo 277773 Mm.212727 NM_177785 ENSMUSG00000050141 Fam205c 4931430D02|FAM205CP - 4|4 A5 family with sequence similarity 205, member C protein-coding 52614 Mm.210497 NM_139138 ENSMUSG00000032915 Adgre4 D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127 - 17 C-D|17 28.98 cM adhesion G protein-coupled receptor E4 protein-coding 100034 AI115610 - - - expressed sequence AI115610 unknown 102635326 XR_376655 Gm32696 - - 4 D2.2|4 predicted gene, 32696 ncRNA 52381 D5Ertd566e - - 5 44.78 cM DNA segment, Chr 5, ERATO Doi 566, expressed unknown 100504104 Mm.391737 NR_045686 ENSMUSG00000087249 Gm16062 - - 11|11 B1.3 predicted gene 16062 ncRNA 100417910 Gm18895 - - 2|2 H4 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene pseudo 98404 Mm.28817 NM_133818 ENSMUSG00000010290 AI597479 - - 1|1 B expressed sequence AI597479 protein-coding 100042465 Mm.442814 XR_387012 Gm3858 Gm1717 - X D|X predicted gene 3858 unknown 61101 D1Mit495 - - 1 55.79 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 495 unknown 102636277 XR_873510 Gm33389 - - 13 B1|13 predicted gene, 33389 ncRNA 112117 Nnc1 - - - neuron number control 1 unknown 71904 Mm.142343 NM_027995 ENSMUSG00000037348 Paqr7 2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR - 4|4 D3 progestin and adipoQ receptor family member VII protein-coding 553093 LOC553093 - - - uncharacterized LOC553093 unknown 433702 Mm.389536 NM_001033201 ENSMUSG00000028330 Ncbp1 AU014645|AW538051|CBP80 - 4 B1|4 24.49 cM nuclear cap binding protein subunit 1 protein-coding 100418411 Gm19192 - - 4|4 D1 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 pseudogene pseudo 546882 Gm5987 EG546882 - 5|5 E5 lactate dehydrogenase A pseudogene pseudo 52574 D11Ertd326e - - 11 11.41 cM DNA segment, Chr 11, ERATO Doi 326, expressed unknown 382567 Gm5182 EG382567 - 12|12 A1.1 acetyl-Coenzyme A carboxylase alpha pseudogene pseudo 68592 Mm.29989 NM_026780 ENSMUSG00000028821 Syf2 1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29 - 4 D3|4 67.15 cM SYF2 homolog, RNA splicing factor (S. cerevisiae) protein-coding 105245516 XR_873502 1700072F12Rik - - 13|13 B1 RIKEN cDNA 1700072F12 gene ncRNA 102633237 XR_379698 Gm31114 - - 9 E3.1|9 predicted gene, 31114 ncRNA 100039760 Gm15148 - - X|X F3 ribosomal protein L39 pseudogene pseudo 105245274 XR_872003 Gm40751 - - 10 D1|10 predicted gene, 40751 ncRNA 269094 Mm.153305 NM_001033368 D730002M21Rik - - 19|19 D2 RIKEN cDNA D730002M21 gene unknown 102634003 Mm.421290 XR_389617 ENSMUSG00000105440 Gm31693 Gm43673 - 3 A3|3 predicted gene, 31693 ncRNA 100526482 NR_037248 ENSMUSG00000078026 Mir466o Mir4660|mmu-mir-466o - 2 A1|2 8.22 cM microRNA 466o ncRNA 100861817 XM_003689089 Gm21242 - - Y D|Y predicted gene, 21242 protein-coding 668361 Gm9127 EG668361 - 7 B1|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100503430 Cep112os1 Gm11666 - 11|11 71.83 cM centrosomal protein 112, opposite strand 1 ncRNA 102637363 XR_376908 Gm34193 - - 5 B3|5 predicted gene, 34193 ncRNA 108167321 XM_017315279 LOC108167321 - - 12 A1.2 zinc finger protein 124-like protein-coding 100312496 Vmn1r-ps49 - - 7|7 A1 vomeronasal 1 receptor, pseudogene 49 pseudo 100416014 Gm17872 - - 13|13 C1 importin 7 pseudogene pseudo 102638930 Gm35373 - - 2|2 predicted gene, 35373 ncRNA 108167628 XR_001779004 Gm28364 - - 1 C3|1 predicted gene 28364 ncRNA 100035567 Ofact - - - open field activity unknown 66259 Mm.41603 NM_025451 ENSMUSG00000046447 Camk2n1 1810006K23Rik|AI848599|AI891706 - 4|4 D3 calcium/calmodulin-dependent protein kinase II inhibitor 1 protein-coding 387203 NR_029594 ENSMUSG00000065452 Mir207 Mirn207|mmu-mir-207 - 4|4 A5 microRNA 207 ncRNA 383754 Gm14132 - - 2|2 G3 transcription termination factor, RNA polymerase I pseudogene pseudo 100417791 Gm18828 - - 1|1 B predicted gene, 18828 pseudo 100035562 Trmq6 - - 3 46.83 cM T cell ratio modifier QTL 6 unknown 270096 Mm.74689 NM_173015 ENSMUSG00000078908 Mon1b 5031407H10|5033413H12Rik - 8|8 E1 MON1 homolog B, secretory traffciking associated protein-coding 102465594 NR_105950 ENSMUSG00000099261 Mir6984 Gm27771|mmu-mir-6984 - 19|19 A microRNA 6984 ncRNA 624378 Gm6499 EG624378 - X|X F3 predicted gene 6499 pseudo 61064 D4Mit227 - - 4 4.43 cM DNA segment, Chr 4, Massachusetts Institute of Technology 227 unknown 103573 Mm.217547 NM_134014 ENSMUSG00000020290 Xpo1 AA420417|Crm1|Exp1 - 11|11 A3.2 exportin 1 protein-coding 108168830 XR_001783614 Gm46785 - - 2 C3|2 predicted gene, 46785 ncRNA 18289 oel - - - open eyelids with cleft palate unknown 102632164 XR_384866 Gm30311 - - 16 B4|16 predicted gene, 30311 ncRNA 727720 Mm.454497 NR_003146 ENSMUSG00000095813 Defa-ps1 Crypi|Defcr-ps1|Defcr-ps26 - 8 A2|8 defensin, alpha, pseudogene 1 pseudo 75876 4930579O11Rik - - 8|8 RIKEN cDNA 4930579O11 gene protein-coding 101056094 XM_006508954 Gm21811 - - 8 A1.3|8 predicted gene, 21811 protein-coding 19046 Mm.241931 NM_172707 ENSMUSG00000014956 Ppp1cb 1200010B19 - 5|5 B1 protein phosphatase 1, catalytic subunit, beta isoform protein-coding 100861971 Btbd35f24 Gm21364 - X A1.1|X BTB domain containing 35, family member 24 pseudo 17330 Mm.255116 NM_010799 ENSMUSG00000024896 Minpp1 AA408516 - 19 C1|19 27.25 cM multiple inositol polyphosphate histidine phosphatase 1 protein-coding 71654 Mm.427318 NR_045364 ENSMUSG00000113652 4930518P08Rik - - 13 A5|13 RIKEN cDNA 4930518P08 gene ncRNA 27646 D0Hgu12 - - - DNA segment, Human Genetics Unit 12 unknown 56876 Mm.42956 NM_020276 ENSMUSG00000006476 Nsmf Jacob|Nelf - 2|2 A3 NMDA receptor synaptonuclear signaling and neuronal migration factor protein-coding 78773 Mm.67065 NR_040761 ENSMUSG00000108187 4930511E03Rik - - 6|6 D2 RIKEN cDNA 4930511E03 gene ncRNA 735259 NR_030431 ENSMUSG00000076335 Mir670 Mirn670|mir-670|mmu-mir-670 - 2 E1|2 microRNA 670 ncRNA 102638227 XR_391574 Gm34838 Gm45385 - 7 C|7 predicted gene, 34838 ncRNA 626325 Gm12274 EG626325 - 11|11 B2 endothelial differentiation-related factor 1 pseudogene pseudo 100035772 Vmbic10 - - - ventral midbrain iron content 10 unknown 102634109 XR_387289 Gm31771 - - 1 D|1 predicted gene, 31771 ncRNA 93900 D16Jhu29 153F7.T7 - - DNA segment, Chr 16, Johns Hopkins University 29 unknown 78026 4930539C01Rik - - 9|9 RIKEN cDNA 4930539C01 gene protein-coding 105242884 XR_880194 Gm38970 - - 11 D|11 predicted gene, 38970 ncRNA 100041445 Vmn1r-ps9 Gm3343 - 6|6 B3 vomeronasal 1 receptor, pseudogene 9 pseudo 21196 T(5;10)9Rl T9Rl - - reciprocal translocation, Chr 5 and 10, Russell 9 other 243880 Mm.322356 NM_172896 ENSMUSG00000040601 Nlrp4a E330021B02|E330028A19Rik|NALP4|Nalp-eta|Nalp-ita|Nalp4a - 7|7 A3 NLR family, pyrin domain containing 4A protein-coding 319775 Mm.319186 E330037M01Rik - - 5|5 RIKEN cDNA E330037M01 gene protein-coding 72519 Mm.279158 NM_028264 ENSMUSG00000028221 Tmem55a 2610319K07Rik|AI315591|AV001360|Pip4p2 - 4|4 A1-A2 transmembrane protein 55A protein-coding 105247247 XR_881947 Gm12762 - - 7 B1|7 19.48 cM predicted gene 12762 ncRNA 67549 Mm.46722 NM_026229 ENSMUSG00000028096 Gpr89 4933412D19Rik|Gpr89a|SH120 - 3|3 F2.1 G protein-coupled receptor 89 protein-coding 359896 DXMgc14 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 14 unknown 77945 Mm.21662 NM_023879 ENSMUSG00000057132 Rpgrip1 0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247 - 14|14 C2 retinitis pigmentosa GTPase regulator interacting protein 1 protein-coding 627800 Mm.391417 NR_046027 ENSMUSG00000098040 Gm20757 - - 10|10 C2 predicted gene, 20757 ncRNA 624056 Ctsm-ps2 EG624056|Gm6469 - 13 B2|13 cathepsin M, pseudogene 2 pseudo 104204 H36 H-36 - - histocompatibility 36 protein-coding 18812 Mm.457984 NM_011118 ENSMUSG00000056457 Prl2c3 Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3 - 13|13 A1 prolactin family 2, subfamily c, member 3 protein-coding 102465660 NR_106057 ENSMUSG00000098490 Mir7089 Gm27418|mmu-mir-7089 - 9|9 F2 microRNA 7089 ncRNA 387285 Mm.335300 NM_198962 ENSMUSG00000032360 Hcrtr2 OX2R|mOX2aR|mOX2bR|mOXR2 - 9|9 D hypocretin (orexin) receptor 2 protein-coding 114872 Mm.322280 NM_054064 ENSMUSG00000023159 Psg29 AA102956|AA409969|cea17 - 7|7 A2 pregnancy-specific glycoprotein 29 protein-coding 66573 Mm.87456 NM_025943 ENSMUSG00000042156 Dzip1 2510025K24Rik|2810422M04Rik - 14|14 E4 DAZ interacting protein 1 protein-coding 21408 Mm.4792 NM_009329 ENSMUSG00000020364 Zfp354a AW488485|Tcf17|Znf354a|kid1 - 11 B1.3|11 30.97 cM zinc finger protein 354A protein-coding 102640871 Gm21753 - - Y|Y predicted gene, 21753 protein-coding 16118 Igk-V34 - - 6 C1|6 immunoglobulin kappa chain variable 34 (V34) other 18039 Mm.1956 NM_010910 ENSMUSG00000022055 Nefl AI847934|CMT2E|NF-L|NF68|Nfl - 14|14 D1 neurofilament, light polypeptide protein-coding 73251 Mm.192111 NM_080793 ENSMUSG00000037111 Setd7 1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717 - 3|3 C SET domain containing (lysine methyltransferase) 7 protein-coding 100101484 Trac Gm16914|Tcra|Tcra-C - 14 27.7 cM|14 C2 T cell receptor alpha constant other 100628580 NR_039562 ENSMUSG00000092852 Mir5103 mir-5103|mmu-mir-5103|mu-mir-5103 - 1 B|1 13.22 cM microRNA 5103 ncRNA 269261 Mm.250030 NM_009076 ENSMUSG00000038900 Rpl12 E430018F03 - 2|2 B ribosomal protein L12 protein-coding 100043306 Gm4350 - - 14 E1|14 oogenesin 3 pseudogene pseudo 635702 Mm.448351 NM_001326288 ENSMUSG00000102758 Naaladl2 2810043G22Rik|EG635702|Gm1021 - 3|3 A3 N-acetylated alpha-linked acidic dipeptidase-like 2 protein-coding 97978 C81530 - - - expressed sequence C81530 protein-coding 104443 Mm.447881 NM_133192 ENSMUSG00000035528 Npffr2 Gpr74|HG31|NPFF2 - 5|5 E1 neuropeptide FF receptor 2 protein-coding 110120482 LOC110120482 - - - VISTA enhancer mm1484 biological-region 258377 Mm.377465 NM_146379 ENSMUSG00000073925 Olfr654 MOR38-2 - 7|7 E3 olfactory receptor 654 protein-coding 676918 Gm20788 - - Y|Y predicted gene, 20788 pseudo 80905 Mm.311585 NM_030715 ENSMUSG00000023953 Polh RAD30A|XPV - 17|17 C polymerase (DNA directed), eta (RAD 30 related) protein-coding 100035229 Knyw1 - - - kidney weight 1 unknown 105244532 XR_867571 Gm40125 - - 3 G1|3 predicted gene, 40125 ncRNA 78180 Mm.243847 NR_040665 ENSMUSG00000086947 4930522O17Rik - - 4|4 B2 RIKEN cDNA 4930522O17 gene ncRNA 100125847 Tbqt7 - - - tibia bone quality traits 7 unknown 100034916 Orgwq9 - - 18 56.23 cM organ weight QTL 9 unknown 104320 Cfp1 Cfp-1 - - cerebellar folial pattern 1 protein-coding 238055 Mm.221239 NM_009693 ENSMUSG00000020609 Apob AI315052|Apo B-100|apob-100|apob-48 - 12 A1.1|12 3.53 cM apolipoprotein B protein-coding 102638953 XR_383585 Gm35388 - - 14 D3|14 predicted gene, 35388 ncRNA 108168144 XR_001781208 Gm46446 - - 14 B|14 predicted gene, 46446 ncRNA 109280015 LOC109280015 Mm127 - - VISTA enhancer mm127 biological-region 100503460 Mm.30630 NR_045324 ENSMUSG00000097113 Gm19705 - - 1 E4|1 59.94 cM predicted gene, 19705 ncRNA 52066 D1Ertd57e - - 1 55.8 cM DNA segment, Chr 1, ERATO Doi 57, expressed unknown 105246762 XR_878691 Gm42004 - - 5 F|5 predicted gene, 42004 ncRNA 14127 Mm.22673 NM_010185 ENSMUSG00000058715 Fcer1g AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50 - 1 H3|1 79.23 cM Fc receptor, IgE, high affinity I, gamma polypeptide protein-coding 16373 Mm.238044 NM_008393 ENSMUSG00000031734 Irx3 AI894186 - 8 C5|8 44.55 cM Iroquois related homeobox 3 protein-coding 16263 In(2)19Rk-d In(2)19Rk|In19Rk - - inversion, Chr 2, Roderick 19, distal other 66950 Mm.236300 NM_025864 ENSMUSG00000026627 Tmem206 2310028N02Rik|AI118576 - 1|1 H6 transmembrane protein 206 protein-coding 613118 Ugt1a3-ps - - - UDP glucuronosyltransferase 1 family, polypeptide A3, pseudogene pseudo 114681 Asthm2 - - - asthma 2 unknown 212919 Mm.55812 NM_172509 ENSMUSG00000034110 Kctd7 4932409E18|9430010P06Rik - 5|5 G1.3 potassium channel tetramerisation domain containing 7 protein-coding 319939 Mm.337820 NM_001083587 ENSMUSG00000020422 Tns3 BC023928|F830010I22Rik|TEM6|Tens1 - 11|11 A1 tensin 3 protein-coding 102640563 XR_375096 Gm36597 - - 2 G3|2 predicted gene, 36597 ncRNA 83603 Mm.83949 NM_148941 ENSMUSG00000032262 Elovl4 - - 9|9 E2 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 protein-coding 102636132 Gm33287 - - 10|10 predicted gene, 33287 ncRNA 104057 Mal1 Mal-1 - - malaria resistance protein-coding 241134 Mm.313904 NM_172849 ENSMUSG00000054976 Nyap2 9430031J16Rik|Jr6|Kiaa1486 - 1|1 C5 neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 protein-coding 102639743 XR_380590 Gm35983 - - 10 C1|10 predicted gene, 35983 ncRNA 100417593 Gm18705 - - 10|10 C2 arginine/serine-rich coiled-coil 1 pseudogene pseudo 102640240 Gm10916 - - 14 C1|14 26.24 cM predicted gene 10916 pseudo 102636018 Gm33209 - - X|X predicted gene, 33209 pseudo 110393 Evi11 - - - ecotropic viral integration site 11 protein-coding 102632613 XR_375105 Gm14144 - - 2 G3|2 74.83 cM predicted gene 14144 ncRNA 100504402 Gm20208 - - 12|12 11.86 cM predicted gene, 20208 ncRNA 100416800 Gm18261 - - 13|13 B3 zinc finger protein 458 pseudogene pseudo 103497 AW743384 - - - expressed sequence AW743384 unknown 105243366 XR_870589 Gm39312 - - 9 A4|9 predicted gene, 39312 ncRNA 111406 Emv43 Emv-43 - - endogenous ecotropic MuLV 43 other 105245667 XR_874124 Gm41089 - - 14 A1|14 predicted gene, 41089 ncRNA 108168942 XR_001784295 Gm46854 - - 4 B2|4 predicted gene, 46854 ncRNA 100114904 Trdd2 Gm16622 - 14|14 C2 T cell receptor delta diversity 2 other 105244606 Gm40195 - - 11|11 predicted gene, 40195 ncRNA 75096 Mm.399287 NR_045316 4930524O05Rik - - 19|19 A RIKEN cDNA 4930524O05 gene ncRNA 93938 D16Jhu78 489K21.SP6 - - DNA segment, Chr 16, Johns Hopkins University 78 unknown 14869 Mm.441542 NM_181796 ENSMUSG00000038155 Gstp2 GSTpiA|Gst-3|Gst3 - 19 A|19 3.75 cM glutathione S-transferase, pi 2 protein-coding 108574 Iapls3-68 - - - intracisternal A particle, lymphocyte specific, probe 3-68 other 16847 Mm.259282 NM_010704 ENSMUSG00000057722 Lepr LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl - 4 C6|4 46.96 cM leptin receptor protein-coding 23919 Mm.100163 NM_011831 ENSMUSG00000066090 Insl5 RIF2 - 4 C6|4 47.27 cM insulin-like 5 protein-coding 100038987 XR_880804 LOC100038987 - - 1|8 uncharacterized LOC100038987 ncRNA 108630 Iap5rc19 - - - intracisternal A-type particle, U5 region, SINE repeat c-19 other 105243775 Gm39560 - - 12|12 predicted gene, 39560 ncRNA 492925 Ssta1 - - 1 31.79 cM susceptibility to Salmonella typhimurium antigens 1 unknown 52521 Mm.29145 NM_144523 ENSMUSG00000052253 Zfp622 1110033B05Rik|D15Ertd806e|ZPR9|Znf622 - 15 B1|15 9.71 cM zinc finger protein 622 protein-coding 100042791 Rps18-ps3 Gm10027 - 8|8 D3 ribosomal protein S18, pseudogene 3 pseudo 259073 Mm.377824 NM_147070 ENSMUSG00000059874 Olfr603 MOR32-14_i|MOR32-2|Olfr603-ps1|Olfr604 - 7|7 E3 olfactory receptor 603 protein-coding 692163 Igkv2-95-1 hb24 - 6|6 C1 immunoglobulin kappa chain variable pseudo 78199 Mm.243850 NR_045395 4930527G23Rik - - 18|18 A2 RIKEN cDNA 4930527G23 gene ncRNA 102635029 XR_386579 Gm32469 - - 19 B|19 predicted gene, 32469 ncRNA 407809 Mm.134505 NR_037990 ENSMUSG00000101429 BC055402 - - 1 C1.3|1 cDNA sequence BC055402 ncRNA 433804 Mm.332047 NM_001014397 ENSMUSG00000065999 Zfp985 Gm13154 - 4|4 E1 zinc finger protein 985 protein-coding 23997 Mm.29760 NM_011875 ENSMUSG00000025487 Psmd13 S11 - 7|7 F5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 protein-coding 27739 254L6.T7 - - - DNA segment, 254L6.T7 (Roswell Park) unknown 233060 Mm.443484 NM_001081007 ENSMUSG00000074220 Zfp382 4930428B01Rik|5930415A09Rik|KS1|Znf382 - 7|7 B1 zinc finger protein 382 protein-coding 108169154 XR_001785319 Gm20426 - - 6 D1|6 40.07 cM predicted gene 20426 ncRNA 16780 Mm.435441 NM_008484 ENSMUSG00000026639 Lamb3 - - 1 H6|1 97.71 cM laminin, beta 3 protein-coding 213393 Mm.38231 NM_145980 ENSMUSG00000048489 8430408G22Rik Depp|Depp1|Fseg - 6|6 E3 RIKEN cDNA 8430408G22 gene protein-coding 107431 Gpr31 - - - G protein-coupled receptor 31 protein-coding 258932 Mm.377754 NM_146930 ENSMUSG00000047626 Olfr791 MOR114-1 - 10|10 D3 olfactory receptor 791 protein-coding 102636249 XR_388114 Gm33368 - - 8 E1|8 predicted gene, 33368 ncRNA 11533 Adh5-ps1 (w)Adh-2|Adh1l - - alcohol dehydrogenase 5 (class III), chi polypeptide, pseudogene 1 pseudo 22380 Mm.476813 NM_018765 ENSMUSG00000022023 Wbp4 AW545037|BB101031|FBP21 - 14|14 D3 WW domain binding protein 4 protein-coding 667884 Gm8859 EG667884 - 1|1 C3 predicted gene 8859 pseudo 237412 Mm.189519 XR_001779825 ENSMUSG00000073427 Gm4924 EG237412|Mif1 - 10|10 C1 predicted gene 4924 protein-coding 319162 Mm.212549 NM_178218 ENSMUSG00000078851 Hist3h2a - - 11|11 B1.3 histone cluster 3, H2a protein-coding 103468 Mm.12568 NM_134010 ENSMUSG00000052798 Nup107 AW541137|C76801 - 10|10 D2 nucleoporin 107 protein-coding 258466 Mm.246628 NM_146474 ENSMUSG00000061295 Olfr1261 MOR234-3 - 2|2 E1 olfactory receptor 1261 protein-coding 236293 Mm.440581 NM_172776 ENSMUSG00000075044 Slc22a29 D630002G06Rik - 19|19 A solute carrier family 22. member 29 protein-coding 102633407 XR_380941 Gm26847 - - 10 D3|10 predicted gene, 26847 ncRNA 228993 Mm.87189 NM_183161 ENSMUSG00000023393 Slc17a9 1700019H03Rik|BC019537|Vnut - 2|2 H4 solute carrier family 17, member 9 protein-coding 61012 D5Mit179 - - 5 10.81 cM DNA segment, Chr 5, Massachusetts Institute of Technology 179 unknown 106780815 Obox4-ps24 - - 7 A2|7 oocyte specific homeobox 4, pseudogene 24 pseudo 108167921 Gm46292 - - 11 D|11 predicted gene, 46292 pseudo 102633880 Mm.314757 NR_155347 A730081D07Rik - - 13|13 A3.3 RIKEN cDNA A730081D07 gene ncRNA 19051 Mm.42096 NM_011153 ENSMUSG00000002930 Ppp1r17 G-substrate|Gsbs|Ppp1r2 - 6 B3|6 27.65 cM protein phosphatase 1, regulatory subunit 17 protein-coding 14865 Mm.31203 NM_026764 ENSMUSG00000027890 Gstm4 1110004G14Rik|GSTM7-7|Gstb-4|Gstb4 - 3|3 F2.3 glutathione S-transferase, mu 4 protein-coding 211255 Mm.284526 NM_001024135 ENSMUSG00000043881 Kbtbd7 1110008P08Rik|AU045792|Gm295 - 14|14 D3 kelch repeat and BTB (POZ) domain containing 7 protein-coding 102465579 NR_105925 ENSMUSG00000098698 Mir6960 Gm27620|mmu-mir-6960 - 15|15 F1 microRNA 6960 ncRNA 62612 D13Mit160 - - 13 49.23 cM DNA segment, Chr 13, Massachusetts Institute of Technology 160 unknown 100526 AA517457 - - - expressed sequence AA517457 unknown 109575 Mm.246555 NM_011533 ENSMUSG00000037477 Tbx10 Dc|Tbx13|Tbx7 - 19 A|19 3.71 cM T-box 10 protein-coding 102636986 XR_388692 Gm15755 - - 11 B1.3|11 37.7 cM predicted gene 15755 ncRNA 329986 Mm.453523 NM_001007579 ENSMUSG00000070618 BC080695 - - 4|4 E1 cDNA sequence BC080695 protein-coding 70061 Mm.158320 NM_027301 ENSMUSG00000040127 Sdr9c7 1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro - 10|10 D3 4short chain dehydrogenase/reductase family 9C, member 7 protein-coding 100417456 Gm18618 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 384174 Gm5291 EG384174 - 5|5 B3 solute carrier family 25, member 5 pseudogene pseudo 69771 Mm.393274 NR_040344 1810019D21Rik - - 8|8 D3 RIKEN cDNA 1810019D21 gene ncRNA 435375 Gm5667 EG435375 - 13 C3|13 enolase 2, gamma neuronal pseudogene pseudo 17222 Mm.277408 NM_008569 ENSMUSG00000014355 Anapc1 2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24 - 2|2 F1 anaphase promoting complex subunit 1 protein-coding 102640988 Gm24595 - - X|X predicted gene, 24595 pseudo 233115 Mm.257808 NM_178704 ENSMUSG00000043671 Dpy19l3 6030410G08|9330164H19Rik - 7|7 B2 dpy-19-like 3 (C. elegans) protein-coding 214855 Mm.34316 NM_145996 ENSMUSG00000037447 Arid5a D430024K22Rik|Mrf1 - 1|1 B AT rich interactive domain 5A (MRF1-like) protein-coding 404438 Olfr865-ps1 GA_x5J8B7W6RL5-12878266-12878409 - 9|9 A3 olfactory receptor 865, pseudogene 1 pseudo 105242425 XR_386261 Gm38695 - - 18 D3|18 predicted gene, 38695 ncRNA 67740 Mm.443246 4930588J15Rik - - 15|15 RIKEN cDNA 4930588J15 gene unknown 56222 Mm.272646 NM_019563 ENSMUSG00000070803 Cited4 MRG-2|Mrg2 - 4 D2.2|4 56.52 cM Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 protein-coding 100042493 Mm.407493 NM_011335 ENSMUSG00000095675 Ccl21b 6CKBAC1|6Ckine|AI159701|CKb9|SLC|Scya21|Scya21a|TCA4 - 4 A5|4 22.12 cM chemokine (C-C motif) ligand 21B (leucine) protein-coding 243574 Mm.333275 NM_001008785 ENSMUSG00000030031 Kbtbd8 AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842 - 6|6 D2 kelch repeat and BTB (POZ) domain containing 8 protein-coding 16283 In(4)28Rk-d In(4)28Rk|In28Rk - - inversion, Chr 4, Roderick 28, distal other 218952 Mm.210018 NM_146054 ENSMUSG00000037712 Fermt2 AA960555|Kindlin-2|Mig2|Plekhc1 - 14|14 C1 fermitin family member 2 protein-coding 277589 Gm5070 EG277589 - 3|3 F2.1 ribosomal protein S2 pseudogene pseudo 105243444 LOC105243444 - - 9 C dynein light chain 1, cytoplasmic-like pseudo 20761 Mm.57083 NR_003548 ENSMUSG00000046203 Sprr2g - - 3 F1|3 40.14 cM small proline-rich protein 2G pseudo 100039635 Gm2350 - - 18 A1|18 predicted gene 2350 unknown 102641070 XR_390156 Gm38530 - - 3 F2.2|3 predicted gene, 38530 ncRNA 100038670 Mm.24887 F630010C12Rik - - - RIKEN cDNA F630010C12 gene protein-coding 62335 D19Mit99 - - 19 21.25 cM DNA segment, Chr 19, Massachusetts Institute of Technology 99 unknown 102642197 LOC102642197 - - - small integral membrane protein 15 protein-coding 327760 Mm.23529 NR_040638 ENSMUSG00000093568 Gm20611 4930565A17 - 10|10 B4 predicted gene 20611 ncRNA 104678 AW742696 - - - expressed sequence AW742696 unknown 673582 Rpl31-ps17 EG544868|Gm16382 - 12|12 C1 ribosomal protein L31, pseudogene 17 pseudo 76332 Mm.240108 NM_029746 ENSMUSG00000031979 Cog2 1190002B08Rik|2700012E02Rik|C86089|Ldlc - 8|8 E2 component of oligomeric golgi complex 2 protein-coding 320854 Mm.441858 9030203C11Rik - - 10|10 A2 RIKEN cDNA 9030203C11 gene unknown 112003 Vispl - - 11 82.96 cM visual placing unknown 414091 Mm.240068 NM_001033546 A630001O12Rik Gm45803 - 8|8 E2 RIKEN cDNA A630001O12 gene ncRNA 19064 Mm.1269 NM_008918 ENSMUSG00000017316 Ppy AV061413|IGSPP|PP - 11|11 D pancreatic polypeptide protein-coding 21849 Mm.15701 NM_011588 ENSMUSG00000005566 Trim28 AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta - 7|7 A1 tripartite motif-containing 28 protein-coding 100040787 Gm2966 - - 14|14 B predicted gene 2966 pseudo 101557 Mm.41038 AI415467 - - - expressed sequence AI415467 protein-coding 108234 Snrpe-ps2 - - - small nuclear ribonucleoprotein E, pseudogene 2 pseudo 100417334 Gm18537 - - 6|6 C3 DENN/MADD domain containing 4C pseudogene pseudo 61973 D8Mit314 - - - DNA Segment, Chr 8, Massachusetts Institute of Technology 314 unknown 621246 Gm6207 EG621246 - X|X F1 preferentially expressed antigen in melanoma-like 3 pseudogene pseudo 102637627 XR_377572 Gm34389 - - 6 B1|6 predicted gene, 34389 ncRNA 100035340 Org3 ORG4.1 - 4 28.62 cM organ weight 3 unknown 98610 AU045220 - - - expressed sequence AU045220 protein-coding 241084 Pced1c-ps EG241084|Gm4958 - 1|1 C3 PC-esterase domain containing 1C, pseudogene pseudo 100041230 Mm.442307 NM_001195421 ENSMUSG00000069306 Hist1h4m Gm11275 - 13 A3.1|13 histone cluster 1, H4m protein-coding 21126 T(2;19)68H T68H - - reciprocal translocation, Chr 2 and 19, Harwell 68 other 102467537 n-TGtcc6 n-Tg25 - 11 B3|11 nuclear encoded tRNA glycine 6 (anticodon TCC) tRNA 100036561 Pis2 - - - pilocarpine-induced seizures 2 unknown 52808 Mm.9997 NM_029836 ENSMUSG00000041096 Tspyl2 CDA1|CINAP|DENTT|DXBwg1396e|DXHXS1008E|E130307F10Rik - X F3|X 68.46 cM TSPY-like 2 protein-coding 102465195 NR_105794 ENSMUSG00000105002 Mir6375 mmu-mir-6375 - 6|6 C3 microRNA 6375 ncRNA 100038504 Mm.439995 XR_140754 Gm10369 - - 5 G2|5 predicted gene 10369 unknown 628416 Mm.390723 NM_001037931 Gm6878 EG628416 - 14 D1|14 predicted gene 6878 protein-coding 229688 Mm.261645 NM_178412 ENSMUSG00000027902 Chil6 BYm|Chil8 - 3|3 F2.3 chitinase-like 6 protein-coding 100039192 Mm.33344 NM_001270498 ENSMUSG00000072680 Tmem254c Gm10395 - 14 A3|14 transmembrane protein 254c protein-coding 111631 Tcra-V19 - - - T cell receptor alpha, variable 19 other 677073 Gm16477 EG668718 - 7|7 F3 ribosomal protein L7a pseudogene pseudo 67048 Mm.41102 NM_001081356 ENSMUSG00000073131 Vma21 2610030H06Rik|AI840175 - X|X A7.3 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) protein-coding 102633076 LOC102633076 - - 7 B1 60S ribosomal protein L23a pseudogene pseudo 62807 D14Mit200 - - 14 58.2 cM DNA segment, Chr 14, Massachusetts Institute of Technology 200 unknown 97144 C78128 - - - expressed sequence C78128 protein-coding 102631753 XR_373740 Gm30013 - - 1 H4|1 predicted gene, 30013 ncRNA 624845 Mm.469866 NM_001101572 ENSMUSG00000091468 Vmn2r82 EG624845 - 10|10 C1 vomeronasal 2, receptor 82 protein-coding 20319 Mm.19155 NM_009144 ENSMUSG00000027996 Sfrp2 AI851596|Sdf5 - 3 E3|3 37.37 cM secreted frizzled-related protein 2 protein-coding 208936 Mm.167471 NM_172466 ENSMUSG00000053399 Adamts18 9630038L21|ADAMTS21|E130314N14Rik - 8|8 E1 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18 protein-coding 258823 Mm.390131 NM_146826 ENSMUSG00000094254 Olfr969 MOR171-7 - 9|9 A5.1 olfactory receptor 969 protein-coding 100503717 Gm19855 - - 8|8 24.31 cM predicted gene, 19855 pseudo 102634100 XR_881620 Gm38459 - - 4 E2|4 predicted gene, 38459 ncRNA 69661 Mm.58243 NM_027155 ENSMUSG00000050704 2310061N02Rik - - 16|16 C3.3 RIKEN cDNA 2310061N02 gene protein-coding 100416306 Gm18024 - - 12|12 A2 ribosomal protein S7 pseudogene pseudo 100417230 Gm18469 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 242497 Gm11224 - - 4|4 C2 eukaryotic translation initiation factor 3, subunit C pseudogene pseudo 751553 NR_030466 ENSMUSG00000076141 Mir693 Mirn693|mir-693|mmu-mir-693 - 17 C|17 microRNA 693 ncRNA 22778 Mm.103545 NM_009578 ENSMUSG00000018654 Ikzf1 5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227 - 11 A1|11 7.02 cM IKAROS family zinc finger 1 protein-coding 102640881 XR_376851 Gm36840 - - 5 B1|5 predicted gene, 36840 ncRNA 101057 AB059417 - - - expressed sequence AB059417 protein-coding 791079 NR_030427 ENSMUSG00000076451 Mir770 Mirn770|mir-770|mmu-mir-770 - 12 F1|12 microRNA 770 ncRNA 432742 Mm.139230 Gm29675 - - 13|13 A3.2 predicted gene, 29675 ncRNA 19405 Rare3 - - - retinoic acid response element 3 other 100416437 Gm18111 - - X|X C3 Kruppel-like factor 17 pseudogene pseudo 238123 Mm.173068 NM_001163126 ENSMUSG00000035933 Cog5 5430405C01Rik|C87247|D18362|GOLTC1|GTC90 - 12|12 A2-A3 component of oligomeric golgi complex 5 protein-coding 100040550 Gm2836 - - X|X E3 La ribonucleoprotein domain family, member 7 pseudogene pseudo 74218 Mm.159141 NM_028824 ENSMUSG00000029320 1700016H13Rik - - 5|5 E5 RIKEN cDNA 1700016H13 gene protein-coding 111654 Ifna Ifa|Ifa8 - 4 C3-C6|4 interferon alpha other 100035289 Catys1 - - 13 67.21 cM catalepsy susceptibility 1 unknown 62014 D6Mit355 - - 6 25.86 cM DNA segment, Chr 6, Massachusetts Institute of Technology 355 unknown 105245974 XR_875403 Gm41343 - - 15 D3|15 predicted gene, 41343 ncRNA 112328 Hcs6 - - 19 38.15 cM hepatocarcinogenesis susceptibility 6 unknown 621893 NM_178213 ENSMUSG00000063689 Hist2h2ab EG621893|H2a-613a - 3|3 F2.1 histone cluster 2, H2ab protein-coding 113848 Mm.349358 NM_053221 ENSMUSG00000068232 Vmn1r42 V1ra1|V1ra3|V1ra6 - 6|6 D1 vomeronasal 1 receptor 42 protein-coding 100503542 Gm19761 - - 7 E1|7 52.05 cM PDZ domain-containing protein 11-like pseudo 105244291 Gm39930 - - 2|2 predicted gene, 39930 pseudo 102219 Mm.442304 AU018794 - - - expressed sequence AU018794 unknown 668245 Gm9063 EG668245 - 12 F1|12 predicted gene 9063 pseudo 97956 C78115 - - - expressed sequence C78115 unknown 70592 Mm.437183 NR_045500 ENSMUSG00000029089 5730480H06Rik - - 5|5 B3 RIKEN cDNA 5730480H06 gene ncRNA 15378 Mm.202383 NM_008261 ENSMUSG00000017950 Hnf4a HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14 - 2 H3|2 84.32 cM hepatic nuclear factor 4, alpha protein-coding 66358 Mm.22511 NM_025510 ENSMUSG00000020910 Adprm 2310004I24Rik|MDS006 - 11|11 B3 ADP-ribose/CDP-alcohol diphosphatase, manganese dependent protein-coding 100316704 NR_035478 ENSMUSG00000088491 Mir1953 mir-1953|mmu-mir-1953 - 2 G3|2 74.83 cM microRNA 1953 ncRNA 71591 Mm.38195 NM_001007568 ENSMUSG00000022526 Zfp251 9130001M19Rik|AV339307 - 15|15 D3 zinc finger protein 251 protein-coding 23859 Mm.147213 NM_011807 ENSMUSG00000052572 Dlg2 A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93 - 7 E1|7 51.07 cM discs large MAGUK scaffold protein 2 protein-coding 632454 Tpt1-ps6 EG668296|Gm16469 - X|X D tumor protein, translationally-controlled, pseudogene 6 pseudo 112315 Tria5 - - - T cell receptor induced activation 5 unknown 62798 D14Mit225 - - 14 39.46 cM DNA segment, Chr 14, Massachusetts Institute of Technology 225 unknown 15235 Mm.8369 NM_008243 ENSMUSG00000032591 Mst1 D3F15S2h|D9H3F15S2|DNF15S2h|Hgfl - 9 F1|9 59.07 cM macrophage stimulating 1 (hepatocyte growth factor-like) protein-coding 11572 Mm.14138 NM_009639 ENSMUSG00000025433 Crisp3 Aeg2|CRISP-3|CRS3|SGP28 - 17 B2|17 19.45 cM cysteine-rich secretory protein 3 protein-coding 258694 Mm.391190 NM_146699 ENSMUSG00000045126 Olfr1445 MOR202-7 - 19|19 A olfactory receptor 1445 protein-coding 100862059 XM_011251043 ENSMUSG00000103468 Gm21440 - - Y A1|Y predicted gene, 21440 protein-coding 23789 Mm.276859 NM_011778 ENSMUSG00000024835 Coro1b - - 19 A|19 3.85 cM coronin, actin binding protein 1B protein-coding 268591 Mm.73172 NM_172953 ENSMUSG00000041550 Serpina5 4933415L04|PAI-3|Pci - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 5 protein-coding 108168045 XM_017315656 Gm46386 - - 13 B3|13 predicted gene, 46386 protein-coding 108167777 XR_001779681 Gm46195 - - 10 C1|10 predicted gene, 46195 ncRNA 19941 Mm.3229 NM_009080 ENSMUSG00000060938 Rpl26 SIG-20 - 11|11 B3 ribosomal protein L26 protein-coding 13200 Mm.7236 NM_007838 ENSMUSG00000028757 Ddost - - 4|4 D3 dolichyl-di-phosphooligosaccharide-protein glycotransferase protein-coding 100502858 Gm19418 - - 5 E1|5 43.56 cM predicted gene, 19418 pseudo 16997 Mm.3900 NM_013589 ENSMUSG00000002020 Ltbp2 AW208642 - 12|12 D1 latent transforming growth factor beta binding protein 2 protein-coding 102633474 XR_373992 Gm31290 - - 2 A1|2 predicted gene, 31290 ncRNA 71911 Mm.293470 NM_175177 ENSMUSG00000046598 Bdh1 2310032J20Rik|AI327223|Bdh - 16|16 B2 3-hydroxybutyrate dehydrogenase, type 1 protein-coding 102637122 XR_867453 Gm34014 - - 3 F1|3 predicted gene, 34014 ncRNA 68278 Mm.28222 NM_197982 ENSMUSG00000005481 Ddx39 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49 - 8|8 C2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 protein-coding 624960 Gm6540 EG624960 - 17|17 A3.3 predicted gene 6540 pseudo 105244069 XR_865901 Gm39747 - - 1 H6|1 predicted gene, 39747 ncRNA 18440 Mm.8032 NM_011028 ENSMUSG00000022758 P2rx6 P2rxl1|P2x6|P2xm - 16|16 A3 purinergic receptor P2X, ligand-gated ion channel, 6 protein-coding 627866 Gm6801 EG627866 - 1|1 C1.1 solute carrier family 39 (zinc transporter), member 10 pseudogene pseudo 258478 Mm.271400 NM_146485 ENSMUSG00000062105 Olfr183 MOR183-2 - 16|16 C1.3 olfactory receptor 183 protein-coding 28279 D10Jhu48 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 48 unknown 61765 D3Mit292 - - 3 71.03 cM DNA segment, Chr 3, Massachusetts Institute of Technology 292 unknown 102642137 LOC102642137 - - - 40S ribosomal protein S13 protein-coding 665053 Gm7466 EG665053 - 18 A1|18 phosphoglycerate kinase 1 pseudogene pseudo 100418390 Gm19179 - - 19|19 C3 translocase of inner mitochondrial membrane 23 homolog pseudogene pseudo 435328 Ighv1-67 EG435328|Gm5659 - 12|12 F2 immunoglobulin heavy variable V1-67 other 100417346 Gm13608 - - 2|2 B BTG3 associated nuclear protein pseudogene pseudo 58235 Mm.335096 NM_021424 ENSMUSG00000032012 Nectin1 AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1 - 9|9 A5.1 nectin cell adhesion molecule 1 protein-coding 67151 Mm.278997 NM_026000 ENSMUSG00000029440 Psmd9 1500011J20Rik|2610202L11Rik|Bridge-1|P27 - 5|5 F proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 protein-coding 70971 Mm.158514 NR_038004 ENSMUSG00000047324 4931429P17Rik - - 13|13 A5 RIKEN cDNA 4931429P17 gene ncRNA 171269 Mm.377221 NM_134235 ENSMUSG00000061296 Vmn1r210 V1rh10 - 13|13 A3.1 vomeronasal 1 receptor 210 protein-coding 108168694 XR_001782977 Gm46720 - - 6 G3|6 predicted gene, 46720 ncRNA 27045 Mm.12915 NM_012049 ENSMUSG00000013997 Nit1 AI255805|ESTM30|W57327 - 1 H3|1 79.35 cM nitrilase 1 protein-coding 97536 C79777 - - - expressed sequence C79777 unknown 102632436 Mm.444568 Gm11872 - - 4|4 8.12 cM predicted gene 11872 ncRNA 61082 D3Mit304 - - 3 7.49 cM DNA Segment, Chr 3, Massachusetts Institute of Technology 304 unknown 108510 Ms13-4 Ms13-Ps4 - - minisatellite 13-4 detected by M13 phage probe other 328971 Mm.312675 NM_177829 ENSMUSG00000044176 Spink10 A230091H23Rik - 18|18 E1 serine peptidase inhibitor, Kazal type 10 protein-coding 117113 D12Pgn3 - - - DNA segment, Chr 12, Paigen 3 unknown 328748 Mm.472517 A930024N18Rik A930024N18 - 17|17 A2 RIKEN cDNA A930024N18 gene protein-coding 70779 Mm.263355 NM_027547 ENSMUSG00000029913 Prdm5 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2 - 6|6 C1 PR domain containing 5 protein-coding 433882 Mm.319353 NR_131130 ENSMUSG00000067285 Gm16223 EG433882 - 5|5 B3 predicted gene 16223 ncRNA 666231 Gm7993 EG666231 - 5 E3|5 ornithine decarboxylase, structural 1 pseudogene pseudo 246792 Mm.26391 NM_145708 ENSMUSG00000074369 Obox2 - - 7|7 A2 oocyte specific homeobox 2 protein-coding 56693 Mm.20904 NM_019922 ENSMUSG00000032431 Crtap 5730529N23Rik|CASP|Leprel3|P3h5 - 9|9 F3 cartilage associated protein protein-coding 282665 Serpinb1-ps1 EID|ovalbumin - 13 A3.2|13 13.76 cM serine (or cysteine) peptidase inhibitor, clade B, member 1, pseudogene pseudo 116708 Uvbi2 - - 17 22.26 cM UVB induced immunosuppression 2 unknown 13397 Mm.482625 NR_002839 ENSMUSG00000094868 Dlx6os2 Dlx6as|Dlx6as2 - 6 A1|6 2.83 cM distal-less homeobox 6, opposite strand 2 ncRNA 625863 Mageb16-ps2 EG625863|Gm10141 - 6|6 B3 melanoma antigen family B, 16, pseudogene 2 pseudo 78920 Mm.296221 NM_030225 ENSMUSG00000004789 Dlst 1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS - 12|12 D1 dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) protein-coding 71795 Mm.397413 NM_145823 ENSMUSG00000040430 Pitpnc1 1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta - 11|11 E1 phosphatidylinositol transfer protein, cytoplasmic 1 protein-coding 15500 Mm.261395 NM_008297 ENSMUSG00000019878 Hsf2 AI661205 - 10|10 B4 heat shock factor 2 protein-coding 108168932 XR_001784249 Gm46847 - - 4 A1|4 predicted gene, 46847 ncRNA 214240 Mm.221499 NM_170593 ENSMUSG00000040035 Disp2 AI840597|B230210L08Rik|DispB|mKIAA1742 - 2|2 E5 dispatched RND tramsporter family member 2 protein-coding 665277 Gm11970 - - 11|11 A1 predicted gene 11970 pseudo 100043590 Smt3h2-ps2 - - 7|7 F3 SMT3 suppressor of mif two 3 homolog 2, pseudogene 2 (S. cerevisiae) pseudo 100049077 Mm.46647 NR_132099 Gm45914 - - 9 A3|9 predicted gene, 45914 ncRNA 18645 Mm.271744 NM_019410 ENSMUSG00000027805 Pfn2 Pfn - 3 D|3 28.15 cM profilin 2 protein-coding 110120417 LOC110120417 - - - VISTA enhancer mm1017 biological-region 234875 Mm.38436 NM_145607 ENSMUSG00000037300 Ttc13 BC017545 - 8|8 E2 tetratricopeptide repeat domain 13 protein-coding 100417426 Gm12345 - - 11|11 B5 upstream transcription factor 1 pseudogene pseudo 16779 Mm.27560 NM_008483 ENSMUSG00000052911 Lamb2 AW211941|Lamb-2|Lams|npht - 9 F2|9 59.4 cM laminin, beta 2 protein-coding 100034950 Arti2 - - 10 34.8 cM age related thymic involution 2 unknown 102633332 LOC102633332 - - 11 A2 60S ribosomal protein L39 pseudogene pseudo 21168 T(3;19)25Ad T25Ad - - reciprocal translocation, Chr 3 and 19, Adler 25 other 67887 Mm.290353 NM_026432 ENSMUSG00000031532 Saraf 1810045K07Rik|Tmem66 - 8|8 A4 store-operated calcium entry-associated regulatory factor protein-coding 102638581 XR_382721 Gm35111 - - 13 C3|13 predicted gene, 35111 ncRNA 621901 Mm.491051 NR_044989 Gm6268 EG621901 - X|X A3.3 predicted gene 6268 ncRNA 102637518 XR_392186 ENSMUSG00000101317 Gm28284 CH36-110G13.2 - Y C2|Y predicted gene 28284 ncRNA 102634796 Gm32297 - - 4|4 predicted gene, 32297 ncRNA 257852 Gm20553 GA_x5J8B7W3939-136239-135295 - 7|7 A1 olfactory receptor GA_x5J8B7W3939-136239-135295 pseudo 102634568 Gm32116 - - 12|12 predicted gene, 32116 pseudo 77593 Mm.154306 NM_152825 ENSMUSG00000040455 Usp45 3110003C05Rik|4930550B20Rik|AI843191|Gcap7 - 4|4 A3 ubiquitin specific petidase 45 protein-coding 116974 Nsv1 - - 2 62.63 cM Neuroadapted Sindbis viral RNA level 1 unknown 102638943 XR_868388 Gm35380 - - 5 B3|5 predicted gene, 35380 ncRNA 102632127 XR_385060 Gm30281 - - 16 C4|16 predicted gene, 30281 ncRNA 100042989 Gm4152 - - 17|17 B1 predicted gene 4152 pseudo 77082 2900011L18Rik - - 13|13 RIKEN cDNA 2900011L18 gene protein-coding 69036 Mm.21835 NM_026918 ENSMUSG00000049350 Zg16 1810010M01Rik|AI593689|ZG16p - 7|7 F3 zymogen granule protein 16 protein-coding 102639482 Gm35786 - - 3|3 predicted gene, 35786 ncRNA 100041858 Gm3549 - - 6|6 C1 DDB1 and CUL4 associated factor 6 pseudogene pseudo 14025 Mm.53687 NM_016707 ENSMUSG00000000861 Bcl11a 2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809 - 11|11 A3.2 B cell CLL/lymphoma 11A (zinc finger protein) protein-coding 105246939 XR_880488 Gm42133 Gm43271 - 5 E4|5 predicted gene, 42133 ncRNA 16570 Mm.7688 NM_008445 ENSMUSG00000020668 Kif3c mKIAA4058 - 12 A1.1|12 1.77 cM kinesin family member 3C protein-coding 100416689 Gm18196 - - 7|7 B1 olfactory receptor 1359 pseudogene pseudo 102638572 Gm35106 - - 3|3 predicted gene, 35106 pseudo 100042291 Mm.412604 NR_131156 ENSMUSG00000113074 Gm3772 - - 13 C1|13 predicted gene 3772 ncRNA 76183 Mm.265415 NM_175235 ENSMUSG00000032297 Celf6 6330569O16Rik|Brunol6 - 9|9 B CUGBP, Elav-like family member 6 protein-coding 102465201 NR_105804 ENSMUSG00000098493 Mir6383 Gm27689|mmu-mir-6383 - X|X F1 microRNA 6383 ncRNA 100504371 Mm.436828 Gm13920 - - 2|2 54.13 cM predicted gene 13920 unknown 19597 Rb(6.18)2Dn Rb2Dn - - Robertsonian translocation, Chr 6 and 18, Davisson 2 other 73492 1700085G17Rik - - 4|4 RIKEN cDNA 1700085G17 gene protein-coding 102467520 n-TEctc8 n-Te8 - 1 H3|1 nuclear encoded tRNA glutamic acid 8 (anticodon CTC) tRNA 493919 Snord115 MBII-52 - - small nucleolar RNA, C/D Box 115 cluster protein-coding 100039954 Mm.400419 NR_046067 ENSMUSG00000110281 Gm2516 - - 8 B1.3|8 predicted gene 2516 ncRNA 19270 Mm.431266 NM_008981 ENSMUSG00000021745 Ptprg 5430405N12Rik|AW046354|AW549872|RPTPgamma - 14 A1|14 6.33 cM protein tyrosine phosphatase, receptor type, G protein-coding 100503251 Gm19611 - - 10 B1|10 22.08 cM sperm motility kinase-like pseudo 62852 D12Mit194 - - 12 44.28 cM DNA segment, Chr 12, Massachusetts Institute of Technology 194 unknown 62816 D13Mit266 - - 13 14.44 cM DNA segment, Chr 13, Massachusetts Institute of Technology 266 unknown 105246519 XR_877639 Gm16146 - - 18 E4|18 57.53 cM predicted gene 16146 ncRNA 105245298 XR_872071 Gm40773 - - 10 D2|10 predicted gene, 40773 protein-coding 638251 Mm.482063 NM_001184981 ENSMUSG00000094156 Sult2a7 EG638251|Gm7231 - 7|7 A1 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7 protein-coding 21298 T(X;16)16H T16H - - reciprocal translocation, Chr X and 16, Harwell 16 other 102635200 XR_385567 LOC102635200 - - 17 B1 uncharacterized LOC102635200 ncRNA 28165 DYzEms22 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 22 unknown 105245835 LOC105245835 - - 14 E1 ATP synthase subunit d, mitochondrial pseudogene pseudo 62955 D12Mit257 - - 12 39.55 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 257 unknown 60897 D8Mit47 - - 8 53.24 cM DNA segment, Chr 8, Massachusetts Institute of Technology 47 unknown 52490 D18Ertd289e - - 18 5.89 cM DNA segment, Chr 18, ERATO Doi 289, expressed unknown 75802 Mm.271911 4930458D05Rik - - 5|5 RIKEN cDNA 4930458D05 gene ncRNA 100415975 Gm17846 - - 1|1 C3 exportin 5 pseudogene pseudo 100035741 Musz1 Ms1 - - muscle size 1 unknown 100416921 Gm18323 - - 11|11 B1.3 TBCC domain containing 1 pseudogene pseudo 11854 Mm.27701 NM_007485 ENSMUSG00000041845 Rhod AI326383|Arhd|Rho|RhoHP1|RhoM - 19|19 A ras homolog family member D protein-coding 50918 Mm.29874 NM_016969 ENSMUSG00000068566 Myadm D7Wsu62e - 7 A1|7 1.92 cM myeloid-associated differentiation marker protein-coding 105244552 XR_867625 Gm40145 - - 3 G1|3 predicted gene, 40145 ncRNA 70082 Mm.19119 NM_027309 ENSMUSG00000032184 Lysmd2 2210402C18Rik|AV033872|AW538442 - 9|9 D LysM, putative peptidoglycan-binding, domain containing 2 protein-coding 622494 Gm6325 EG622494 - X|X D predicted gene 6325 pseudo 102640187 XR_386163 Gm36315 - - 18 B2|18 predicted gene, 36315 ncRNA 102640153 XR_375736 Gm36288 - - 3 E3|3 predicted gene, 36288 ncRNA 102640108 XR_380460 Gm36257 - - 10 B4|10 predicted gene, 36257 ncRNA 100035066 W10q10 - - - weight 10 weeks QTL 10 unknown 493096 Trigq2 Tgq2 - 8 28.85 cM triglyceride QTL 2 unknown 112021 Szv1 Kasz6 - 5 26.02 cM seizure severity 1 unknown 69019 Mm.28852 NM_026911 ENSMUSG00000021917 Spcs1 1810004F21Rik - 14|14 B signal peptidase complex subunit 1 homolog (S. cerevisiae) protein-coding 101056009 Gm29762 - - 3 H1|3 predicted gene, 29762 pseudo 105246823 Gm42047 Gm45836 - 8 E1|8 predicted gene, 42047 pseudo 385362 Gm5389 Aldoa-ps|EG385362 - X|X A6 aldolase A pseudogene pseudo 67276 Mm.207534 NM_026067 ENSMUSG00000031527 Eri1 3'hexo|3110010F15Rik|Thex1|eri-1 - 8|8 A4 exoribonuclease 1 protein-coding 214931 Mm.152289 NM_001164225 ENSMUSG00000025738 Fbxl16 BC042620|Scirr1 - 17|17 A3.3 F-box and leucine-rich repeat protein 16 protein-coding 16516 Mm.272239 NM_019664 ENSMUSG00000062609 Kcnj15 4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2 - 16 C4|16 55.86 cM potassium inwardly-rectifying channel, subfamily J, member 15 protein-coding 545262 Gm5822 EG545262 - 19|19 C1 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 52708 Mm.255150 NM_144833 ENSMUSG00000042472 Zfp410 Apa1|D12Ertd748e|Znf410 - 12 D1|12 39.15 cM zinc finger protein 410 protein-coding 216190 Mm.282985 NM_145220 ENSMUSG00000020263 Appl2 Dip3b - 10|10 C1 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 protein-coding 277154 Mm.319347 NM_001040072 ENSMUSG00000075592 Nynrin AA409373|C80530|mKIAA1305 - 14|14 C3 NYN domain and retroviral integrase containing protein-coding 100042823 Rpl9-ps6 Gm10117 - 19|19 C1 ribosomal protein L9, pseudogene 6 pseudo 102467380 n-TSgct6 n-Ts20 - 19 A|19 nuclear encoded tRNA serine 6 (anticodon GCT) tRNA 100416267 Gm18009 - - 6|6 F3 STAM binding protein pseudogene pseudo 14651 Mm.43784 NM_024284 ENSMUSG00000024158 Hagh BC019817|Glo-2|Glo2|Rsp29 - 17 A3.3|17 12.53 cM hydroxyacyl glutathione hydrolase protein-coding 676894 Gm9694 - - 1 G3|1 predicted gene 9694 unknown 75552 Mm.151485 NM_198414 ENSMUSG00000064225 Paqr9 1700020G04Rik - 9|9 E3.3 progestin and adipoQ receptor family member IX protein-coding 329078 Mm.80382 NR_002863 ENSMUSG00000087095 Emx2os - - 19|19 D3 Emx2 opposite strand/antisense transcript (non-protein coding) ncRNA 111825 Iapls1-50 - - - intracisternal A particle, lymphocyte specific 1-50 other 108168187 XM_017316335 ENSMUSG00000090627 LOC108168187 - - 14 A1 uncharacterized LOC108168187 protein-coding 105246803 Gm42028 - - 8|8 predicted gene, 42028 ncRNA 14607 Mm.248452 NM_008119 ENSMUSG00000014351 Gip - - 11|11 D gastric inhibitory polypeptide protein-coding 66276 Mm.27503 NM_025463 ENSMUSG00000071653 1810009A15Rik - - 19|19 A RIKEN cDNA 1810009A15 gene protein-coding 108169136 XR_001785203 Gm46955 - - 6 A3.3|6 predicted gene, 46955 ncRNA 13311 Del(4)53H Del53H - - deletion, Chr 4, Harwell 53 other 668283 Gm9085 EG668283 - X|X A1.3 predicted gene 9085 pseudo 26919 Mm.22795 NM_012017 ENSMUSG00000021481 Zfp346 Jaz|Znf346 - 13|13 B1 zinc finger protein 346 protein-coding 105246730 Gm41972 - - 1|1 predicted gene, 41972 ncRNA 108167556 XR_001778666 Gm46054 - - 8 E1|8 predicted gene, 46054 ncRNA 108604 Iap3rb16 - - - intracisternal A-type particle, U3 region, SINE repeat b-16 other 102632417 XR_377374 Gm30493 - - 6 A3.1|6 predicted gene, 30493 ncRNA 19448 Rb(1.3)1Bnr Rb1Bnr - - Robertsonian translocation, Chr 1 and 3, Universitat Bonn/Rhein 1 other 171231 Mm.377188 NM_134197 ENSMUSG00000045417 Vmn1r230 V1re8 - 17|17 A3.2 vomeronasal 1 receptor 230 protein-coding 102640063 XR_389086 Gm36220 - - 11 E1|11 predicted gene, 36220 ncRNA 102636058 XR_878274 Gm33235 - - X F2|X predicted gene, 33235 ncRNA 100503034 Gm15228 - - X|X 78.27 cM predicted gene 15228 ncRNA 102631639 XR_874618 Gm17078 - - 14 C1|14 26.59 cM predicted gene 17078 ncRNA 320793 Mm.403862 A330072L02Rik - - 17|17 RIKEN cDNA A330072L02 gene protein-coding 22619 Mm.196345 NM_011734 ENSMUSG00000001942 Siae LSE|Ysg2 - 9 A4|9 20.79 cM sialic acid acetylesterase protein-coding 69700 Mm.322500 NM_027174 ENSMUSG00000079022 Col22a1 2310067L16Rik|C80743 - 15|15 D3 collagen, type XXII, alpha 1 protein-coding 100042279 XM_017318759 ENSMUSG00000101766 Gm20908 - - Y|Y C3 predicted gene, 20908 protein-coding 100503969 Mm.383527 NR_045301 1810008I18Rik - - 7|7 C RIKEN cDNA 1810008I18 gene ncRNA 100036473 Vmmt19 - - - vertebral morphology and mechanical traits 19 unknown 77644 Mm.290704 NM_029951 ENSMUSG00000006423 C330007P06Rik - - X|X A3.3 RIKEN cDNA C330007P06 gene protein-coding 70824 4921504P20Rik - - 4|4 RIKEN cDNA 4921504P20 gene protein-coding 78177 Mm.120911 NM_207204 ENSMUSG00000068115 Ninl 4930519N13Rik|Gm1004|Gm1634|mKIAA0980 - 2|2 G3 ninein-like protein-coding 100416384 Gm18089 - - 18|18 A2 predicted gene, 18089 pseudo 105245570 Mm.461534 Gm26803 - - 13|13 predicted gene, 26803 ncRNA 12017 Mm.688 NM_009736 ENSMUSG00000028416 Bag1 BAG-1|Rap46 - 4|4 A5 BCL2-associated athanogene 1 protein-coding 112247 Sluc8 - - 7 88.86 cM susceptibility to lung cancer 8 unknown 71898 Mm.422856 NM_173743 ENSMUSG00000068246 Apol9b 2310016F22Rik - 15|15 E1 apolipoprotein L 9b protein-coding 546735 Gm5975 EG546735 - 1|1 C1.1 tripartite motif-containing 75 pseudogene pseudo 232449 Mm.29181 NM_172733 ENSMUSG00000030225 Dera 2010002D22Rik|2500002K03Rik|DEOC - 6|6 G1 deoxyribose-phosphate aldolase (putative) protein-coding 239029 Mm.477093 NM_172808 ENSMUSG00000047441 Antxrl 1700112N15Rik|4933430J11 - 14|14 B anthrax toxin receptor-like protein-coding 236604 Mm.247625 NM_001004146 Pisd-ps1 - - 11 A1|11 phosphatidylserine decarboxylase, pseudogene 1 pseudo 102634676 XR_390545 Gm32208 - - 4 B1|4 predicted gene, 32208 ncRNA 102632954 XR_373206 Gm30898 - - 1 A2|1 predicted gene, 30898 ncRNA 111379 Mtv3 Mtv-18|Mtv-3 - - mammary tumor virus locus 3 other 100416826 Gm18283 - - 15|15 D3 zinc finger protein 113 pseudogene pseudo 21663 tda3 - - - testis-determining autosomal 3 unknown 100861839 XM_017318795 ENSMUSG00000095606 Gm21258 - - Y C1|Y predicted gene, 21258 protein-coding 229517 Mm.301740 NM_178696 ENSMUSG00000050144 Slc25a44 6720482A19|B430110G05Rik - 3|3 F1 solute carrier family 25, member 44 protein-coding 102639337 XR_387349 LOC102639337 - - 1 E3 uncharacterized LOC102639337 ncRNA 102643180 Mm.421315 LOC102643180 - - - uncharacterized LOC102643180 ncRNA 110120540 LOC110120540 - - - VISTA enhancer mm1500 biological-region 74092 Mm.396264 NR_045447 ENSMUSG00000089900 Tbc1d22bos 0610038L08Rik - 17|17 A3.3 TBC1 domain family, member 22B, opposite strand ncRNA 108167703 Gm46141 - - 9 F2|9 60S ribosomal protein L36 pseudogene pseudo 105246993 XR_880630 Gm42181 - - X A3.1|X predicted gene, 42181 ncRNA 233549 Mm.208030 NM_177448 ENSMUSG00000052396 Mogat2 DGAT2L5|MGAT2|Mgat1l - 7|7 E1 monoacylglycerol O-acyltransferase 2 protein-coding 665777 Hmgb1-ps11 EG665777|Gm7782 - 13|13 B3 high mobility group box 1, pseudogene 11 pseudo 58200 Mm.143788 NM_021391 ENSMUSG00000022490 Ppp1r1a 0610038N18Rik|I-1 - 15|15 F3 protein phosphatase 1, regulatory (inhibitor) subunit 1A protein-coding 19170 Mm.32912 NM_011185 ENSMUSG00000014769 Psmb1 AA409053|C81484|Lmpc5 - 17 A2|17 8.95 cM proteasome (prosome, macropain) subunit, beta type 1 protein-coding 61330 D3Mit193 - - 3 63.83 cM DNA segment, Chr 3, Massachusetts Institute of Technology 193 unknown 102631774 XR_382081 Gm30026 - - 13 A1|13 predicted gene, 30026 ncRNA 13109 Mm.12838 NM_010007 ENSMUSG00000052520 Cyp2j5 - - 4 C5|4 44.71 cM cytochrome P450, family 2, subfamily j, polypeptide 5 protein-coding 102633032 Mm.396235 XM_006535583 1700064H15Rik - - 3|3 A2 RIKEN cDNA 1700064H15 gene protein-coding 52212 D9Ertd167e - - 9 31.79 cM DNA segment, Chr 9, ERATO Doi 167, expressed unknown 15204 Mm.20929 NM_010418 ENSMUSG00000030451 Herc2 D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs - 7 B5|7 33.42 cM HECT and RLD domain containing E3 ubiquitin protein ligase 2 protein-coding 217303 Mm.294439 NM_170758 ENSMUSG00000034652 Cd300a B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1 - 11 E2|11 80.54 cM CD300A molecule protein-coding 108167328 XR_873901 Gm45940 - - 13 D2.1|13 predicted gene, 45940 ncRNA 102467459 n-TAtgc1 n-Ta30 - X F1|X nuclear encoded tRNA alanine 1 (anticodon TGC) tRNA 100417493 Gm20586 Hspd1-18p - 8|8 B1.3 heat shock protein 1 (chaperonin) pseudogene 18 pseudo 102639651 XR_384618 Gm35912 - - 16 A1|16 predicted gene, 35912 ncRNA 66432 Mm.269029 NM_001007567 ENSMUSG00000033106 Slc7a6os 2010007L18Rik|2400002F02Rik - 8|8 D3 solute carrier family 7, member 6 opposite strand protein-coding 71778 Mm.10281 NM_175174 ENSMUSG00000054920 Klhl5 1300013C10Rik - 5|5 C3.1 kelch-like 5 protein-coding 100317 Mm.206206 NM_133886 ENSMUSG00000028830 AU040320 A730047D20Rik|AAVR|Kiaa0319l - 4|4 D2.2 expressed sequence AU040320 protein-coding 100038381 Mm.483630 Gm10647 - - - predicted gene 10647 unknown 625767 Gm6620 EG625767 - X|X F3 predicted gene 6620 pseudo 108168909 XR_001784042 Gm46830 - - 3 H3|3 predicted gene, 46830 ncRNA 110740344 Hs-3'beta1 - - 7 E3 beta1-globin 3' enhancer biological-region 71861 Mm.116957 NM_027964 ENSMUSG00000034552 Zswim2 1700025P14Rik|4933437F18Rik|MEX - 2|2 D zinc finger SWIM-type containing 2 protein-coding 116920 D13Jde7 - - - DNA segment, Chr 13, Jan Deussing 7 unknown 13006 Mm.14910 NM_007790 ENSMUSG00000024974 Smc3 Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD - 19|19 D2 structural maintenance of chromosomes 3 protein-coding 102642477 Mm.290802 LOC102642477 - - - uncharacterized LOC102642477 ncRNA 402750 C130057G02Rik - - 14|14 RIKEN cDNA C130057G02 gene protein-coding 110756 Ngfg-rs2 - - - nerve growth factor gamma, related sequence 2 protein-coding 111959 Iap5rc11 - - - intracisternal A-type particle, U5 region, SINE repeat c-11 other 108169003 XR_001784543 Gm46888 - - 4 C6|4 predicted gene, 46888 ncRNA 78794 4930402H05Rik - - 6|6 D1 RIKEN cDNA 4930402H05 gene protein-coding 105243254 XR_879102 Gm39224 - - 8 C5|8 predicted gene, 39224 ncRNA 100039049 Gm2020 - - 2|2 H4 predicted gene 2020 pseudo 100042837 Gm15644 - - 6 C1|6 predicted gene 15644 pseudo 102466993 NR_106044 ENSMUSG00000099129 Mir7076 Gm27318|mmu-mir-7076 - 8|8 E1 microRNA 7076 ncRNA 258091 Olfr359-ps1 MOR159-2P - 2|2 B olfactory receptor 359, pseudogene 1 pseudo 110120500 LOC110120500 - - - VISTA enhancer mm1296 biological-region 332923 Mm.473672 NM_001085516 ENSMUSG00000070890 Gm12794 - - 4|4 C6 predicted gene 12794 protein-coding 328801 Mm.181488 NM_026712 ENSMUSG00000073423 Zfp414 0610030H11Rik|Znf414 - 17|17 B1 zinc finger protein 414 protein-coding 17880 Mm.250705 NM_013607 ENSMUSG00000018830 Myh11 AV071570|SM1|SM2|smMHC - 16 A1|16 9.71 cM myosin, heavy polypeptide 11, smooth muscle protein-coding 52906 Mm.253280 NM_026203 ENSMUSG00000019986 Ahi1 1700015F03Rik|Ahi-1|D10Bwg0629e - 10 A3|10 9.75 cM Abelson helper integration site 1 protein-coding 108168652 XM_017318863 LOC108168652 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 493178 Vtbt4 - - 7 63.78 cM vertebral trabecular bone trait 4 unknown 108167353 LOC108167353 - - 2 A3 ATP synthase subunit f, mitochondrial pseudogene pseudo 102638013 Gm34682 - - 1|1 predicted gene, 34682 ncRNA 493160 Splq4 - - - spleen weight QTL 4 unknown 52993 NDS9 - - - DNA segment, NDS9 unknown 100035641 Mpdk8 - - - modifier of polycystic kidney disease 8 unknown 74173 Mm.309774 NM_028796 ENSMUSG00000079179 Rab10os 1700012B15Rik|1810036A22Rik - 12|12 A1.1 RAB10, member RAS oncogene family, opposite strand ncRNA 100035004 Lfq2 - - - live fetuses QTL 2 unknown 665998 Mm.425699 NM_001085548 ENSMUSG00000078262 Krtap4-9 - - 11 D|11 keratin associated protein 4-9 protein-coding 100417365 Gm18564 - - 17|17 A2 BRCA1 associated RING domain 1 pseudogene pseudo 69966 Mm.416903 NR_045497 ENSMUSG00000102046 2810404M03Rik - - 8|8 A4 RIKEN cDNA 2810404M03 gene ncRNA 100043324 XR_872527 ENSMUSG00000073198 Bnip3l-ps Gm10480 - 12|12 A1.2 BCL2/adenovirus E1B interacting protein 3-like, pseudogene pseudo 100043865 Gm12755 - - 7|7 B1 predicted gene 12755 pseudo 66055 Mm.102627 NM_025323 ENSMUSG00000037361 Sf3b6 0610009D07Rik|6030419K15Rik|AV001342|Sf3b14 - 12|12 A1.1 splicing factor 3B, subunit 6 protein-coding 723946 NR_029773 ENSMUSG00000065429 Mir345 Mirn345|mir-345|mmu-mir-345 - 12|12 F1 microRNA 345 ncRNA 100049163 Mm.486065 Gm9777 - - - predicted gene 9777 unknown 140796 Sluc2 Pas6 - 2 41.97 cM susceptibility to lung cancer 2 unknown 53791 Mm.116894 NM_016928 ENSMUSG00000079164 Tlr5 - - 1 H5|1 86.12 cM toll-like receptor 5 protein-coding 105243548 Gm39439 - - 9|9 predicted gene, 39439 ncRNA 233578 Mm.377251 NM_207621 ENSMUSG00000073972 Olfr553 MOR25-2 - 7|7 E3 olfactory receptor 553 protein-coding 23922 Mm.13912 NM_206924 ENSMUSG00000027937 Jtb Gm622 - 3|3 F1 jumping translocation breakpoint protein-coding 72899 Mm.229466 NM_028387 ENSMUSG00000068205 Macrod2 1110033L15Rik|2610107G07Rik|2900006F19Rik - 2|2 F3-G1 MACRO domain containing 2 protein-coding 328943 6030438J01 - - 18|18 B3 uncharacterized protein 6030438J01 protein-coding 102637785 XR_001782252 Gm34510 - - 17 A2|17 predicted gene, 34510 ncRNA 216049 Mm.268346 NM_178679 ENSMUSG00000037855 Zfp365 AI839779|AV340892|DBZ|Su48|Znf365|talanin - 10|10 B5.1 zinc finger protein 365 protein-coding 497028 Gm5776 EG497028|Mrps33p - 7|7 B5 Mrps33 pseudogene pseudo 18232 Mm.131616 NM_008752 ENSMUSG00000069132 Nxph2 - - 2|2 A3 neurexophilin 2 protein-coding 53333 Mm.61682 NM_016871 ENSMUSG00000002984 Tomm40 AW539759|Mom35|Tom40 - 7|7 A3 translocase of outer mitochondrial membrane 40 protein-coding 74915 Mm.159369 NM_029121 ENSMUSG00000053375 Atp6v1e2 4930500C14Rik|Atp6e1|E1 - 17|17 E4 ATPase, H+ transporting, lysosomal V1 subunit E2 protein-coding 100041569 Gm3411 - - 14 A1|14 predicted gene 3411 protein-coding 100036450 Htas1 - - - hypothermia due to alcohol sensitivity 1 unknown 216892 Mm.212812 NM_153060 ENSMUSG00000040447 Spns2 - - 11|11 B4 spinster homolog 2 protein-coding 100041379 Mm.276881 NM_001103158 ENSMUSG00000058186 Zfp980 Gm13242 - 4 E1|4 zinc finger protein 980 protein-coding 108167895 XR_001780190 Gm46277 - - 11 A4|11 predicted gene, 46277 ncRNA 52140 D4Ertd582e - - 4 10.82 cM DNA segment, Chr 4, ERATO Doi 582, expressed unknown 105244265 Gm39906 - - 2|2 predicted gene, 39906 ncRNA 111674480 LOC111674480 - - - Cftr promoter region biological-region 27893 D16Ium72 - - 16 50.37 cM DNA segment, Chr 16, Indiana University Medical 72 unknown 116454 Asm1 - - - autoimmune sialadenitis in MRL mice 1 unknown 102640750 XR_374323 Gm36744 - - 2 B|2 predicted gene, 36744 ncRNA 14872 Mm.24118 NM_010361 ENSMUSG00000033318 Gstt2 AI266894|Yrs|mGSTT2 - 10 C1|10 38.58 cM glutathione S-transferase, theta 2 protein-coding 73730 Mm.291773 NM_028628 ENSMUSG00000046676 Lce1l 1110008K04Rik|AI415426 - 3|3 F1 late cornified envelope 1L protein-coding 110120567 LOC110120567 - - - VISTA enhancer mm1552 biological-region 112191 Remslp2 - - - rapid eye movement sleep 2 unknown 109445 Pbd2 Cti1 - 13 12.94 cM peak bone density 2 unknown 60745 D1Mit84 - - 1 46.24 cM DNA segment, Chr 1, Massachusetts Institute of Technology 84 unknown 269695 Mm.320042 NM_172998 ENSMUSG00000032850 Rnft2 AW049082|B830028P19Rik|Tmem118 - 5|5 F ring finger protein, transmembrane 2 protein-coding 244698 Mm.325134 NM_001164797 ENSMUSG00000031936 Hephl1 Gm509|Zp|zyklopen - 9|9 A2 hephaestin-like 1 protein-coding 69042 Mm.158234 XR_376286 ENSMUSG00000028177 1810013D15Rik - - 3|3 H4 RIKEN cDNA 1810013D15 gene ncRNA 53697 D6Nds4 D0Nds27 - 6 20.9 cM DNA segment, Chr 6, Nuffield Department of Surgery 4 unknown 665927 Mm.422762 NM_001177518 ENSMUSG00000079114 Gm7849 EG665927 - 8|8 A2 predicted gene 7849 protein-coding 62536 D11Mit169 - - 11 15.63 cM DNA segment, Chr 11, Massachusetts Institute of Technology 169 unknown 102638271 XR_377948 Gm34873 - - 6 E1|6 predicted gene, 34873 ncRNA 100503619 Mm.387531 NR_045698 ENSMUSG00000109841 E330011O21Rik - - 16|16 C3.1 RIKEN cDNA E330011O21 gene ncRNA 105245018 Gm40532 - - 9|9 predicted gene, 40532 ncRNA 245598 Mm.72281 NM_207250 ENSMUSG00000049815 4921511C20Rik Gm383 - X|X E3 high density lipoprotein (HDL) binding protein pseudogene pseudo 384696 Mm.480283 NM_001166708 ENSMUSG00000094010 Vmn1r119 Gm1447 - 7|7 A3 vomeronasal 1 receptor 119 protein-coding 104106 Ath8 - - 4|4 24.16 cM atherosclerosis 8 protein-coding 100043461 XM_001480498 ENSMUSG00000090817 Gm4450 - - 3 F2.2|3 predicted gene 4450 protein-coding 666764 Gm8278 EG666764 - 13|13 C1 taxilin alpha pseudogene pseudo 102640287 XR_386536 Gm36394 - - 19 A|19 predicted gene, 36394 ncRNA 74741 Mm.130260 NM_029081 ENSMUSG00000030279 C2cd5 5730419I09Rik|C030008B15Rik|CDP138 - 6|6 G3 C2 calcium-dependent domain containing 5 protein-coding 52260 D4Ertd279e - - - DNA segment, Chr 4, ERATO Doi 279, expressed unknown 102637497 Mm.384424 XR_001784552 Gm34289 - - 4 A5|4 predicted gene, 34289 ncRNA 107853 Scl1 Scl-1 - - susceptibility to cutaneous leishmaniasis 1 protein-coding 66152 Mm.269736 NM_197979 ENSMUSG00000059534 Uqcr10 1110020P15Rik|AA960494|Ucrc - 11|11 A1 ubiquinol-cytochrome c reductase, complex III subunit X protein-coding 27784 Mm.44223 NM_178599 ENSMUSG00000029213 Commd8 C77770|D5Buc26e - 5 C3.2|5 38.44 cM COMM domain containing 8 protein-coding 60918 D9Mit19 - - 9 71.55 cM DNA segment, Chr 9, Massachusetts Institute of Technology 19 unknown 57257 Mm.282257 NM_020505 ENSMUSG00000033721 Vav3 A530094I06Rik|AA986410|Idd18.1 - 3|3 F3 vav 3 oncogene protein-coding 791395 Mm.321840 D330020A13Rik - - - RIKEN cDNA D330020A13 gene protein-coding 102639977 XR_387902 Gm36163 - - 8 C4|8 predicted gene, 36163 ncRNA 12508 Mm.316861 NM_007651 ENSMUSG00000040747 Cd53 AI323659|Ox-44|Tspan25 - 3 F2.3|3 46.53 cM CD53 antigen protein-coding 100861756 XM_017318706 Gm21191 - - Y C1|Y predicted gene, 21191 protein-coding 433256 Mm.292056 NM_027976 ENSMUSG00000024981 Acsl5 1700030F05Rik|ACS2|ACS5|Facl5 - 19|19 D2 acyl-CoA synthetase long-chain family member 5 protein-coding 359879 DXMgc40 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 40 unknown 100035591 Hmdc - - 5 47.29 cM heterogeneity of muscle Gapd decay constants unknown 104297 Igis1 - - - immunoglobulin isotype 1 unknown 676072 Gm12983 - - 4|4 D3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene pseudo 620088 Igkv18-36 Gm16689|dv-36 - 6|6 C1 immunoglobulin kappa chain variable 18-36 other 19207 Mm.287037 NM_008958 ENSMUSG00000028681 Ptch2 ptc2 - 4 D1|4 53.41 cM patched 2 protein-coding 108167562 XR_001778719 Gm46060 - - 8 E2|8 predicted gene, 46060 ncRNA 109957 P9Ehs1 - - - protein, Chr 9, NIEHS 1 protein-coding 230801 Mm.217004 NM_178698 ENSMUSG00000043257 Pigv B330013B03|D430024F16Rik - 4|4 D2.3 phosphatidylinositol glycan anchor biosynthesis, class V protein-coding 100042772 Gm14881 - - X|X D predicted gene 14881 pseudo 75738 Mm.66405 Cpeb1os1 5430439G13Rik - 7|7 cytoplasmic polyadenylation element binding protein 1, opposite strand 1 protein-coding 56422 Mm.25527 NM_019702 ENSMUSG00000019977 Hbs1l 2810035F15Rik|AI326327|eRFS - 10|10 A3 Hbs1-like (S. cerevisiae) protein-coding 77558 Mm.358918 NR_040273 ENSMUSG00000097166 9330179D12Rik - - 6|6 F3 RIKEN cDNA 9330179D12 gene ncRNA 319266 Mm.482460 NM_181048 ENSMUSG00000079144 A130010J15Rik - - 1|1 H6 RIKEN cDNA A130010J15 gene protein-coding 22139 Mm.2108 NM_013697 ENSMUSG00000061808 Ttr AA408768|AI787086|D17860|prealbumin - 18 A2|18 11.47 cM transthyretin protein-coding 102635563 Gm11433 - - 11|11 51.14 cM predicted gene 11433 protein-coding 102632426 XR_378481 Gm30501 - - 7 F3|7 predicted gene, 30501 ncRNA 268706 Mm.40834 NM_175376 ENSMUSG00000047789 Slc38a9 4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09 - 13|13 D2.2 solute carrier family 38, member 9 protein-coding 238880 Mm.107293 NM_175497 ENSMUSG00000055194 Actbl2 4732495G21Rik - 13|13 D2.2 actin, beta-like 2 protein-coding 108168745 XR_001783277 LOC108168745 - - 2 B uncharacterized LOC108168745 ncRNA 62607 D13Mit144 - - 13 50.5 cM DNA segment, Chr 13, Massachusetts Institute of Technology 144 unknown 100039840 Gm2451 - - 3 H1|3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100039080 Gm2038 - - 10|10 B4 headcase homolog pseudogene pseudo 110745 Hykk1 - - Y|Y histocompatibility Y antigen K-restricted 1 protein-coding 94043 Mm.331719 NM_053157 ENSMUSG00000028563 Tm2d1 2310026L18Rik|AA990549|Bbp - 4|4 C6 TM2 domain containing 1 protein-coding 108168303 XR_001781986 Gm46564 - - 16 A1|16 predicted gene, 46564 ncRNA 18747 Mm.19111 NM_008854 ENSMUSG00000005469 Prkaca PKCD|Pkaca - 8|8 C2 protein kinase, cAMP dependent, catalytic, alpha protein-coding 383186 Gm5221 EG383186 - 16|16 C1.3 G protein pathway suppressor 2 pseudogene pseudo 52722 D14Ertd723e - - - DNA segment, Chr 14, ERATO Doi 723, expressed unknown 665599 Gm7706 EG665599 - 8|8 A1.1 predicted gene 7706 unknown 105247217 XR_881587 Gm13073 - - 4 E2|4 80.19 cM predicted gene 13073 ncRNA 105243202 XR_870486 Gm39187 - - 8 B3.3|8 predicted gene, 39187 ncRNA 108169025 XR_001784770 Gm43358 - - 5 A1|5 predicted gene 43358 ncRNA 105244658 XR_868021 Gm40228 - - 4 D1|4 predicted gene, 40228 ncRNA 105097 AA571384 - - - expressed sequence AA571384 unknown 108168438 Gm14687 - - X A7.1|X 34.81 cM histone H2A.Z pseudogene pseudo 102638793 Gm29554 - - Y|Y predicted gene 29554 protein-coding 18241 Mm.5157 NM_010951 ENSMUSG00000025333 Gpr143 Oa1 - X F3|X 68.46 cM G protein-coupled receptor 143 protein-coding 108168420 XR_001782700 Gm46659 - - 19 C1|19 predicted gene, 46659 ncRNA 61909 D2Mit453 - - 2 80.94 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 453 unknown 62305 D1Mit166 - - 1 82.24 cM DNA segment, Chr 1, Massachusetts Institute of Technology 166 unknown 100036032 Lbm15 - - - lean body mass 15 unknown 105245753 Gm41152 - - 14|14 predicted gene, 41152 ncRNA 70020 Mm.27814 NM_023547 ENSMUSG00000030034 Ino80b 2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4 - 6|6 C3 INO80 complex subunit B protein-coding 66112 Mm.272457 NM_001081361 ENSMUSG00000026621 Marc1 1300013F15Rik|Mosc1 - 1|1 H5 mitochondrial amidoxime reducing component 1 protein-coding 100035072 W3q10 - - - weight 3 weeks QTL 10 unknown 16142 Mm.326349 Iglv1 1810027O01Rik|Igl-V1 - 16 A3|16 11.82 cM immunoglobulin lambda variable 1 other 239731 Mm.86671 NM_001033338 ENSMUSG00000071636 Rimbp3 Gm1759|Gm603|RIM-BP3|mKIAA1666 - 16|16 A3 RIMS binding protein 3 protein-coding 100417876 Gm18873 - - 12|12 C1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 pseudogene pseudo 171192 Mm.377172 NM_134174 ENSMUSG00000090346 Vmn1r5 V1rc19 - 6|6 B3 vomeronasal 1 receptor 5 protein-coding 100035576 Mdmsc6 - - X 41.04 cM modifier of muscularity 6 unknown 75088 Mm.444706 NR_045761 ENSMUSG00000093551 4930505G20Rik - - 14|14 E4 RIKEN cDNA 4930505G20 gene ncRNA 100035302 Cq4 Chol10 - - cholesterol QTL 4 unknown 240916 Mm.71940 NM_177723 ENSMUSG00000049598 Vsig8 A030011M19|EG240916 - 1|1 H3 V-set and immunoglobulin domain containing 8 protein-coding 102640296 XM_006503510 Gm12881 - - 4 D2.2|4 56.8 cM predicted gene 12881 protein-coding 102638915 XR_383482 Gm35361 - - 14 D1|14 predicted gene, 35361 ncRNA 102638612 Gm28879 - - Y|Y predicted gene 28879 protein-coding 66804 8430408J09Rik - - 5|5 RIKEN cDNA 8430408J09 gene protein-coding 108168993 XR_001784525 Gm46881 - - 4 A1|4 predicted gene, 46881 ncRNA 17203 Mm.8003 NM_013596 ENSMUSG00000007480 Mc5r - - 18 E2|18 41.46 cM melanocortin 5 receptor protein-coding 626461 Gm6677 EG626461 - 3|3 E3 predicted gene 6677 pseudo 27606 D0Dcr1 - - - DNA segment, Derry C. Roopenian 1 unknown 52355 Mm.31961 DXErtd573e - - X 56.24 cM DNA segment, Chr X, ERATO Doi 573, expressed unknown 230967 Mm.297905 NM_177673 ENSMUSG00000039523 Cep104 A930027E11|AI115523|Kiaa0562|mKIAA0562 - 4|4 E2 centrosomal protein 104 protein-coding 102631739 Mm.404771 XR_377128 ENSMUSG00000107318 Gm30003 Gm43278 - 5 G2|5 predicted gene, 30003 ncRNA 70311 2510042O18Rik - - 10|10 RIKEN cDNA 2510042O18 gene protein-coding 100306945 NR_028513 ENSMUSG00000065353 Snora73b U17B - 4|4 D2.3 small nucleolar RNA, H/ACA box 73b snoRNA 105244474 XR_867381 Gm40076 - - 3 E3|3 predicted gene, 40076 ncRNA 667775 Gm8805 EG667775 - 1|1 C2 predicted gene 8805 pseudo 105244425 XR_867165 Gm40034 - - 2 H4|2 predicted gene, 40034 ncRNA 21871 Mm.1158 NM_011596 ENSMUSG00000038023 Atp6v0a2 8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2 - 5|5 F ATPase, H+ transporting, lysosomal V0 subunit A2 protein-coding 104328 Hfh7 - - - HNF-3/forkhead homolog 7 protein-coding 666618 Gm13155 - - 4|4 E1 high mobility group box 1-like pseudogene pseudo 105244362 XR_879913 Gm39985 - - 11 B2|11 predicted gene, 39985 ncRNA 102632736 Mm.416869 Gm13964 - - 2|2 57.33 cM predicted gene 13964 ncRNA 102640444 XM_017321847 Gm36504 - - 6 B2.3|6 predicted gene, 36504 protein-coding 102632365 Gm30457 - - 3|3 predicted gene, 30457 ncRNA 107272 Mm.289936 NM_177420 ENSMUSG00000024640 Psat1 D8Ertd814e|EPIP|PSA|Psat - 19 A|19 10.86 cM phosphoserine aminotransferase 1 protein-coding 16577 Kif8 - - - kinesin family member 8 unknown 60803 D4Mit14 - - 4 80.99 cM DNA segment, Chr 4, Massachusetts Institute of Technology 14 unknown 67082 Mm.87439 NM_025956 ENSMUSG00000021850 1700011H14Rik Ccdc198 - 14|14 C1 RIKEN cDNA 1700011H14 gene protein-coding 14747 Mm.5196 NM_008153 ENSMUSG00000042190 Cmklr1 ChemR23|DEZ|Gpcr27|mcmklr1 - 5|5 F chemokine-like receptor 1 protein-coding 378430 Mm.277153 NM_194064 ENSMUSG00000051965 Nanos2 nos2 - 7|7 A3 nanos C2HC-type zinc finger 2 protein-coding 100310868 Gm17819 - - 19 B|19 12.86 cM eukaryotic translation initiation factor 5A pseudogene pseudo 329068 Mm.259790 A330044H09 - - 19|19 C3 uncharacterized protein A330044H09 protein-coding 105244578 XR_867725 Gm40171 - - 3 H2|3 predicted gene, 40171 ncRNA 105245488 XR_873359 Gm40936 - - 13 A5|13 predicted gene, 40936 ncRNA 102633510 XR_389609 Gm31320 - - 3 A2|3 predicted gene, 31320 ncRNA 654352 Gm7326 EG654352 - 17|17 B1 Casitas B-lineage lymphoma pseudogene pseudo 72155 Mm.23185 NM_028131 ENSMUSG00000031756 Cenpn 2610510J17Rik|AI426416|AW545024 - 8|8 E1 centromere protein N protein-coding 52551 Mm.30068 NM_024499 ENSMUSG00000004937 Sgta 5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg - 10 C1|10 39.72 cM small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha protein-coding 382056 Mm.227767 NM_001004062 ENSMUSG00000003575 Crtc1 AI413414|Mect1|R74955|TORC1|mKIAA0616 - 8|8 B3.3 CREB regulated transcription coactivator 1 protein-coding 100125250 Trbj1-3 Gm16644 - 6 19.69 cM|6 B1 T cell receptor beta joining 1-3 other 625594 Gm6605 EG625594 - 7|7 B2 predicted gene 6605 protein-coding 74485 Mm.474494 NM_028971 ENSMUSG00000023084 Lrrc71 4933430H15Rik - 3|3 F1 leucine rich repeat containing 71 protein-coding 100035744 Cfbw4 - - 10 66.65 cM cystic fibrosis body weight 4 unknown 319595 D130060J10Rik - - 16|16 RIKEN cDNA D130060J10 gene protein-coding 19385 Mm.235287 NM_011239 ENSMUSG00000005732 Ranbp1 Htf9a - 16 A3|16 11.3 cM RAN binding protein 1 protein-coding 114262 Manz7 QTL-C11.1 - - mandible size 7 unknown 692132 Mm.383415 NM_001162937 ENSMUSG00000071340 Trappc3l Bet3l - 10 B1|10 trafficking protein particle complex 3 like protein-coding 105245343 Gm40815 - - 11 A1|11 predicted gene, 40815 pseudo 70629 5730512F23Rik - - 1|1 RIKEN cDNA 5730512F23 gene protein-coding 73076 Mm.417827 NR_045907 ENSMUSG00000086254 3100003L05Rik - - 7|7 F3 RIKEN cDNA 3100003L05 gene ncRNA 102635136 Mm.366057 XR_375688 ENSMUSG00000097339 Gm26671 - - 3 D|3 predicted gene, 26671 ncRNA 21859 Mm.4871 NM_011595 ENSMUSG00000020044 Timp3 Timp-3 - 10 C1|10 42.83 cM tissue inhibitor of metalloproteinase 3 protein-coding 19072 Mm.10281 NM_011156 ENSMUSG00000019849 Prep AI047692|AI450383|D10Wsu136e|PEP|Pop - 10 B2|10 23.27 cM prolyl endopeptidase protein-coding 100036573 Mm.474667 Gm13066 - - - predicted gene 13066 protein-coding 546075 Gm5909 EG546075 - 8|8 C1 zinc finger CCCH-type containing 15 pseudogene pseudo 102639025 XR_387096 LOC102639025 - - X F3 uncharacterized LOC102639025 ncRNA 257935 Mm.377308 NM_001011773 ENSMUSG00000095586 Olfr1287 MOR248-15 - 2|2 E3 olfactory receptor 1287 protein-coding 493038 Cd8ts2 - - 8 22.16 cM CD8 T cell subset 2 unknown 19868 Rnu7-ps2 - - 1|1 D U7 small nuclear RNA, pseudogene 2 pseudo 101786 Mm.395157 NR_040317 ENSMUSG00000108379 A730082K24Rik AU044236 - 7 F1|7 RIKEN cDNA A730082K24 gene ncRNA 102639047 XR_385428 Gm35455 - - 17 A2|17 predicted gene, 35455 ncRNA 13644 Mm.236438 NM_010112 ENSMUSG00000022203 Efs - - 14|14 C2 embryonal Fyn-associated substrate protein-coding 381511 Mm.331489 NM_001033453 ENSMUSG00000049225 Pdp1 Gm1024|Ppm2c - 4|4 A1 pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 112236 Gct2 - - 12 21.09 cM granulosa cell tumorigenesis 2 unknown 12966 Mm.491115 NM_007775 ENSMUSG00000025952 Crygc Cryg-5 - 1 C2|1 32.81 cM crystallin, gamma C protein-coding 236285 Mm.245119 NM_173414 ENSMUSG00000047344 Lancl3 6030463G20Rik - X|X A1.1 LanC lantibiotic synthetase component C-like 3 (bacterial) protein-coding 71963 Mm.313185 NM_028023 ENSMUSG00000047832 Cdca4 2410018C03Rik|HEPP|SEI-3 - 12|12 F1 cell division cycle associated 4 protein-coding 110305 If1 If-1 - - NDV-induced circulating interferon protein-coding 232371 Mm.132974 NM_181344 ENSMUSG00000038527 C1rl C1r-LP|C1rl1|C1rlp - 6|6 F2 complement component 1, r subcomponent-like protein-coding 105246550 XR_877775 Gm41824 - - 19 B|19 predicted gene, 41824 ncRNA 105245659 XR_874076 Gm41083 - - 14 A1|14 predicted gene, 41083 ncRNA 27425 Mm.14663 NM_013795 ENSMUSG00000038717 Atp5l 4933437C06Rik - 9|9 A5.2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G protein-coding 109154 Mm.153963 NM_175403 ENSMUSG00000048578 Mlec 2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152 - 5 F|5 55.99 cM malectin protein-coding 105244332 XR_866872 Gm39963 - - 2 H1|2 predicted gene, 39963 ncRNA 76980 Mm.23960 NM_001145162 ENSMUSG00000052981 Ube2ql1 3110006E14Rik - 13|13 C1 ubiquitin-conjugating enzyme E2Q family-like 1 protein-coding 22685 Mm.249661 NM_008616 ENSMUSG00000042097 Zfp239 Mok-2|Mok2|Znf239 - 6 F1|6 55.62 cM zinc finger protein 239 protein-coding 230657 Mm.291484 NM_177670 ENSMUSG00000055900 Tmem69 A630048M13Rik - 4|4 D1 transmembrane protein 69 protein-coding 100039206 Mm.475721 NM_001200006 ENSMUSG00000096688 Mup17 Gm12557|MUP 17 - 4 B3|4 major urinary protein 17 protein-coding 492941 Trigq1 Tgq1 - 9 33.34 cM triglyceride QTL 1 unknown 112182 Gvhd1 - - 1 81.08 cM graft-versus-host disease 1 unknown 225896 Mm.27839 NM_146093 ENSMUSG00000071655 Ubxn1 2B28|4930455J02Rik|D19Ertd721e|T25529|mY33K - 19|19 A UBX domain protein 1 protein-coding 100675 Mm.458764 XR_001785035 AI480526 - - 5 F|5 expressed sequence AI480526 ncRNA 57249 Mm.117125 NM_020488 ENSMUSG00000031344 Gabrq - - X|X A7.3 gamma-aminobutyric acid (GABA) A receptor, subunit theta protein-coding 625377 Gm6580 EG625377 - 14|14 C1 SUMO/sentrin specific peptidase 3 pseudogene pseudo 102467434 n-TKctt17 n-Tk17 - 12 C2|12 nuclear encoded tRNA lysine 17 (anticodon CTT) tRNA 75783 Mm.218472 NR_073013 ENSMUSG00000062496 4930431F12Rik - - 5|5 B3 RIKEN cDNA 4930431F12 gene ncRNA 102636439 XR_384806 Gm33502 - - 16 B2|16 predicted gene, 33502 ncRNA 387511 Mm.377918 NM_199158 ENSMUSG00000056115 Tas2r134 T2R134|Tas2r34 - 2|2 C1.1 taste receptor, type 2, member 134 protein-coding 320224 F830004M19Rik - - 8|8 C3 RIKEN cDNA F830004M19 gene unknown 114070 Heal7 - - 13 27.68 cM wound healing/regeneration 7 unknown 105244144 Mm.447271 Gm13480 - - 2|2 28.74 cM predicted gene 13480 ncRNA 94280 Mm.36169 NM_053197 ENSMUSG00000025212 Sfxn3 - - 19|19 C3 sideroflexin 3 protein-coding 100504252 Gm14198 - - 2|2 76.79 cM predicted gene 14198 ncRNA 723859 NR_029881 ENSMUSG00000104582 Mir380 Mirn380|mir-380|mmu-mir-380 - 12 F1|12 microRNA 380 ncRNA 105242569 XR_861472 LOC105242569 - - - uncharacterized LOC105242569 ncRNA 102640018 XR_384116 Gm36193 - - 15 D1|15 predicted gene, 36193 ncRNA 74721 Mm.399096 4930519P11Rik - - 2|2 RIKEN cDNA 4930519P11 gene protein-coding 114067 Heal3 - - 13 7.34 cM wound healing/regeneration 3 unknown 102632756 XR_377171 Gm30745 - - 5 G2|5 predicted gene, 30745 ncRNA 100042785 Cldn25-ps Cldn21|Cldn21-ps|Cldn25|Gm16492|Gm513 - 9|9 A5.3 claudin 25, pseudogene pseudo 100038654 NR_126579 ENSMUSG00000072589 Gm10371 - - 14 C1|14 predicted gene 10371 ncRNA 100503553 Gm20603 - - 9|9 7.69 cM predicted gene 20603 ncRNA 109279909 LOC109279909 Mm130 - - VISTA enhancer mm130 biological-region 207952 Mm.206223 NM_029652 ENSMUSG00000055652 Klhl25 2810402K13Rik|BC027373|Enc-1 - 7|7 D1 kelch-like 25 protein-coding 100036508 Tglq2 - - - triglyceride QTL 2 unknown 105245506 XR_873426 Gm40954 - - 13 B1|13 predicted gene, 40954 ncRNA 61609 D9Mit245 - - 9 34.3 cM DNA segment, Chr 9, Massachusetts Institute of Technology 245 unknown 330189 Mm.391872 NM_001039723 ENSMUSG00000054434 Tmem120b - - 5|5 F transmembrane protein 120B protein-coding 61206 D1Mit145 - - 1 74.68 cM DNA segment, Chr 1, Massachusetts Institute of Technology 145 unknown 85076 D7Mit86 - - 7 33.37 cM DNA segment, Chr 7, Massachusetts Institute of Technology 86 unknown 105244392 XR_867074 Gm40011 - - 2 H3|2 predicted gene, 40011 protein-coding 52649 D15Ertd489e - - 15 25.87 cM DNA segment, Chr 15, ERATO Doi 489, expressed protein-coding 382090 Mm.335338 NM_199316 ENSMUSG00000056919 Cep162 4922501C03Rik|mKIAA1009 - 9|9 E3.1 centrosomal protein 162 protein-coding 105243513 Gm39413 - - 9|9 predicted gene, 39413 ncRNA 68861 Mm.258746 NM_001033145 ENSMUSG00000045414 1190002N15Rik GoPro49|HASF - 9|9 E3.3 RIKEN cDNA 1190002N15 gene protein-coding 105246000 XR_875507 Gm41367 - - 15 E1|15 predicted gene, 41367 ncRNA 665730 Gm7760 EG665730 - 8 A1.3|8 ribosomal protein S7 pseudogene pseudo 102637278 XR_390896 LOC102637278 - - 4 D3 uncharacterized LOC102637278 ncRNA 108435 Xmmv53 Xmmv-53|Xp-12 - - xenotropic-MCF leukemia virus 53 other 666560 Gm8164 EG666560 - 14 A1|14 ribosomal protein L3 pseudogene pseudo 62626 D14Mit104 - - 14 50.9 cM DNA segment, Chr 14, Massachusetts Institute of Technology 104 unknown 108000 Mm.129746 NM_001081363 ENSMUSG00000026605 Cenpf 6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin - 1 H6|1 95.03 cM centromere protein F protein-coding 668308 Gm9097 EG668308 - X|X D ribosomal protein SA pseudogene pseudo 102466640 NR_105807 ENSMUSG00000098362 Mir130c Gm27641|mmu-mir-130c - 9|9 A5.3 microRNA 130c ncRNA 80286 Mm.272722 NM_030254 ENSMUSG00000039530 Tusc3 AU022242|BC003311|N33 - 8|8 A4 tumor suppressor candidate 3 protein-coding 77771 Mm.102025 NM_153409 ENSMUSG00000044647 Csrnp3 A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2 - 2|2 C1.3 cysteine-serine-rich nuclear protein 3 protein-coding 243272 Mm.23879 NM_145631 ENSMUSG00000038095 Sbno1 9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno - 5|5 F strawberry notch 1 protein-coding 62837 D12Mit231 - - 12 50.87 cM DNA segment, Chr 12, Massachusetts Institute of Technology 231 unknown 60908 D8Mit80 - - 8 43.06 cM DNA segment, Chr 8, Massachusetts Institute of Technology 80 unknown 102635659 XR_001781410 LOC102635659 - - 14 A2 uncharacterized LOC102635659 ncRNA 102631962 XR_001778959 Gm30160 - - 1 C3|1 predicted gene, 30160 ncRNA 72691 Mm.31663 NM_133746 ENSMUSG00000033033 Calhm2 2810048G17Rik|Fam26b - 19|19 C3 calcium homeostasis modulator 2 protein-coding 11556 Mm.278475 NM_013462 ENSMUSG00000031489 Adrb3 Adrb-3 - 8 A2|8 15.94 cM adrenergic receptor, beta 3 protein-coding 12257 Mm.1508 NM_009775 ENSMUSG00000041736 Tspo Bzrp|IBP|PBR|Tspo1 - 15 E1|15 39.4 cM translocator protein protein-coding 105245541 XR_873605 Gm40986 - - 13 B3|13 predicted gene, 40986 ncRNA 111575 Xmv53 Xmv-53 - - xenotropic murine leukemia virus 53 other 102467608 n-TTtgt4 n-Tt18 - 13 A3.1|13 nuclear encoded tRNA threonine 4 (anticodon TGT) tRNA 78154 Mm.416921 4930430O22Rik - - 5|5 RIKEN cDNA 4930430O22 gene ncRNA 100124563 Vmn2r-ps70 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 70 pseudo 625530 Mm.14130 NM_001256973 ENSMUSG00000043073 Usp17le DUB-3|Dub3|Dub6|EG625530|Gm6596|USP17|USP17-E|Usp17l2 - 7 E3|7 55.69 cM ubiquitin specific peptidase 17-like E protein-coding 100049553 Idd6.2 Idd6b - - insulin dependent diabetes susceptibility 6.2 unknown 22300 Mm.377117 NM_009485 Vmn2r123 V2r1 - 14|14 vomeronasal 2, receptor 123 protein-coding 17930 Mm.272115 NM_008664 ENSMUSG00000031461 Myom2 AW146149 - 8|8 A1.1 myomesin 2 protein-coding 85193 D11Mit150 - - 11 7.92 cM DNA segment, Chr 11, Massachusetts Institute of Technology 150 unknown 229675 Mm.29366 NM_172684 ENSMUSG00000044098 Rsbn1 C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002 - 3|3 F2.2 rosbin, round spermatid basic protein 1 protein-coding 56020 D5Buc45 - - - DNA segment, Chr 5, Bucan 45 unknown 102634269 XR_874533 Gm31895 - - 14 B|14 predicted gene, 31895 ncRNA 100418041 Gm18963 - - 18|18 E2 lysosomal-associated protein transmembrane 4B pseudogene pseudo 666564 Gm8167 EG666564 - 8 C2|8 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 209683 Mm.295660 NM_024477 ENSMUSG00000033209 Ttc28 2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK - 5|5 F tetratricopeptide repeat domain 28 protein-coding 22024 Mm.1296 NM_009420 ENSMUSG00000023930 Crisp2 CRISP-2|GAPDL5|Tpx-1|Tpx1 - 17 B2|17 19.54 cM cysteine-rich secretory protein 2 protein-coding 432971 Mm.420353 A130088B03Rik - - 15|15 E2 RIKEN cDNA A130088B03 gene protein-coding 66583 Mm.289086 NM_025644 ENSMUSG00000034321 Exosc1 2610035C18Rik|2610104C07Rik|2610312F07Rik|AI447561 - 19|19 C3 exosome component 1 protein-coding 100504344 Gm20186 - - 6|6 8.16 cM predicted gene, 20186 ncRNA 112105 Stnn Stnn19a - 19 45.06 cM striatal neuron number unknown 102635269 XR_865697 Gm32652 - - 1 H2.2|1 predicted gene, 32652 ncRNA 383520 Gm5255 - - 1|1 C3 protein phosphatase 1, regulatory (inhibitor) subunit 16B pseudogene pseudo 258328 Mm.377437 NM_146331 ENSMUSG00000094745 Olfr954 MOR171-42|MOR171-53 - 9|9 A5.1 olfactory receptor 954 protein-coding 192682 Pcdhg@ - - 18|18 B3 protocadherin gamma cluster other 100415956 Gm17837 - - 1|1 A3 nucleolin pseudogene pseudo 102637981 Gm11954 - - 11|11 2.82 cM predicted gene 11954 pseudo 625901 Mm.366028 NR_040556 ENSMUSG00000097252 Gm6634 EG625901 - 3|3 E2 predicted gene 6634 ncRNA 102466798 NR_106030 ENSMUSG00000098759 Mir7063 Gm27654|mmu-mir-7063 - 7|7 F5 microRNA 7063 ncRNA 105246328 XR_877018 Gm41629 - - 17 E4|17 predicted gene, 41629 ncRNA 76020 Mm.444843 5830409B07Rik - - 4|4 RIKEN cDNA 5830409B07 gene protein-coding 102635839 Gm33080 - - 7 F3|7 myeloma-overexpressed gene 2 protein homolog pseudo 53602 Mm.313619 NM_016677 ENSMUSG00000071379 Hpcal1 NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3 - 12|12 A1.2 hippocalcin-like 1 protein-coding 102632431 Gm30506 - - 16|16 predicted gene, 30506 ncRNA 329702 XM_006502502 ENSMUSG00000109293 Dcst2 Gm760 - 3|3 F1 DC-STAMP domain containing 2 protein-coding 72650 Mm.121658 NM_028310 ENSMUSG00000047635 2810006K23Rik - - 5|5 F RIKEN cDNA 2810006K23 gene protein-coding 54141 Mm.24250 NM_017407 ENSMUSG00000002055 Spag5 AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17 - 11 B5|11 46.74 cM sperm associated antigen 5 protein-coding 108168534 XM_017318721 Gm46714 - - Y E|Y predicted gene, 46714 protein-coding 102631682 Mm.441932 XR_389104 ENSMUSG00000087139 Gm11683 - - 11 E1|11 72.62 cM predicted gene 11683 ncRNA 670819 Gm9504 - - 3 F2.2|3 predicted gene 9504 pseudo 666105 Mm.379315 NM_001358003 Gm7932 EG666105 - 6|6 B2.3 predicted gene 7932 protein-coding 21146 T(2;6)97Dn T97Dn - - reciprocal translocation, Chr 2 and 6, Davisson 97 other 258352 Mm.377449 NM_146355 ENSMUSG00000073906 Olfr692 MOR36-1 - 7|7 E3 olfactory receptor 692 protein-coding 102638470 XR_871161 Gm35025 - - 9 F2|9 predicted gene, 35025 ncRNA 72657 Mm.259293 NM_001033166 ENSMUSG00000076437 Selenoh 2700094K13Rik|Selh - 2|2 D selenoprotein H protein-coding 108394 Xmv11 Xmv-11 - - xenotropic murine leukemia virus 11 other 100040123 Gm2614 - - 12 E|12 predicted gene 2614 pseudo 654805 Mm.436132 NR_028445 F930015N05Rik - - 11|11 B3 RIKEN cDNA F930015N05 gene ncRNA 61532 D8Mit192 - - 8 25.38 cM DNA segment, Chr 8, Massachusetts Institute of Technology 192 unknown 55938 Mm.2161 NM_018816 ENSMUSG00000024391 Apom 1190010O19Rik|G3a|NG20 - 17|17 B1 apolipoprotein M protein-coding 108169131 XR_001785197 Gm46952 - - 6 A1|6 predicted gene, 46952 ncRNA 105244580 Mm.66848 XR_867727 Gm37041 - - 3 H2|3 predicted gene, 37041 ncRNA 100416812 Gm18271 - - 17|17 A3.3 somatostatin receptor 4 pseudogene pseudo 27952 D15Nds1 - - 15 32.17 cM DNA segment, Chr 15, Nuffield Department of Surgery 1 unknown 104434 Hsp84-3 84kDa|Hsp90|hsp3 - - heat shock protein, 3 protein-coding 667917 Igkv3-11 Igk-V21-11 - 6|6 C1 immunoglobulin kappa variable 3-11 pseudo 62197 D15Mit67 - - 15 32.17 cM DNA segment, Chr 15, Massachusetts Institute of Technology 67 unknown 629121 Gm6949 EG629121 - 17|17 C brain creatine kinase pseudogene pseudo 18829 Mm.220853 NM_011124 ENSMUSG00000094686 Ccl21a 6CKBAC2|6Ckine|ALP|AW987545|CKb9|SCYA21a|SLC|Scya21|Scya21b|Tca4|plt - 4 A5|4 22.81 cM chemokine (C-C motif) ligand 21A (serine) protein-coding 100861651 Gm9595 673332 - 13|13 B3 zinc finger protein 525-like pseudo 16554 Mm.23611 NM_001081177 ENSMUSG00000060012 Kif13b 5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN - 14|14 D1 kinesin family member 13B protein-coding 238875 Mm.30533 NM_177713 ENSMUSG00000046006 Gapt 9830130M13Rik - 13|13 D2.1 Grb2-binding adaptor, transmembrane protein-coding 320654 Mm.447456 E330024J20Rik - - 5|5 RIKEN cDNA E330024J20 gene protein-coding 102634205 Mm.405111 XR_374005 ENSMUSG00000085257 Gm13264 - - 2 A1|2 8.28 cM predicted gene 13264 ncRNA 50874 Mm.71935 NM_016712 ENSMUSG00000005628 Tmod4 MTMOD|Sk-Tmod - 3 F2.1|3 40.74 cM tropomodulin 4 protein-coding 69684 Mm.146283 NM_144829 ENSMUSG00000075528 Aarsd1 1110069E20Rik|2310044P18Rik|AA589600|AlaX|AlaXp-II - 11|11 D alanyl-tRNA synthetase domain containing 1 protein-coding 105242898 XR_881931 Gm38982 - - 7 B1|7 predicted gene, 38982 ncRNA 667781 Gm8809 EG667781 - 1|1 C3 predicted gene 8809 pseudo 72993 Mm.202322 NM_145221 ENSMUSG00000040760 Appl1 2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13 - 14|14 A3 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 protein-coding 66161 Mm.22284 NM_025390 ENSMUSG00000030423 Pop4 1110023P21Rik|Rpp29 - 7|7 B3 processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae) protein-coding 78633 1700096C16Rik - - 16|16 RIKEN cDNA 1700096C16 gene protein-coding 385380 Mm.475616 NM_001126488 ENSMUSG00000062564 Tex28 Gm1538|Gm1811 - X|X A7.3 testis expressed 28 protein-coding 637572 Gm7211 EG637572 - 7 B3|7 protein phosphatase 1A, magnesium dependent, alpha isoform pseudogene pseudo 78248 Mm.458522 NM_030066 ENSMUSG00000033460 Armcx1 3010033I09Rik|ALEX1 - X|X E3 armadillo repeat containing, X-linked 1 protein-coding 71870 Mm.78373 NM_027972 ENSMUSG00000026546 Cfap45 1700028D05Rik|Ccdc19|Nesg1 - 1 H3|1 79.91 cM cilia and flagella associated protein 45 protein-coding 102633906 XR_386325 Gm31620 - - 18 E2|18 predicted gene, 31620 ncRNA 102639198 Gm35561 - - Y|Y tRNA methyltransferase 112 homolog pseudo 105246926 XR_880447 Gm42121 - - 5 E3|5 predicted gene, 42121 ncRNA 100534322 Gm38428 - - 13|13 B3 predicted gene, 38428 pseudo 100416441 Gm18113 - - 12|12 C2 ribosomal protein S3A pseudogene pseudo 69875 Mm.279823 NM_027244 ENSMUSG00000002379 Ndufa11 2010012C24Rik|AV006275|B14.7 - 17|17 D NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11 protein-coding 105245596 XR_873822 Gm41027 - - 13 D1|13 predicted gene, 41027 ncRNA 100035484 Ba1 - - - bone area 1 unknown 101769 Mm.349625 AU023617 - - - expressed sequence AU023617 unknown 100043160 Mm.482893 NR_028042 Gm10012 - - 17|17 A3.3 cytochrome c oxidase, subunit VIIc pseudogene pseudo 105244646 XR_867994 Gm40221 - - 4 C7|4 predicted gene, 40221 ncRNA 100041953 Mm.290178 NM_001142441 ENSMUSG00000061104 Sap18b Gm10094 - 8|8 D1 Sin3-associated polypeptide 18B protein-coding 61499 D6Mit1000 D7Mit215 - 6|6 DNA segment, Chr 6, Massachusetts Institute of Technology 1000 unknown 100042226 XR_877382 Gm3734 - - 18 C|18 predicted gene 3734 ncRNA 102632723 XR_373204 Gm30719 - - 1 A2|1 predicted gene, 30719 ncRNA 105243921 XR_865414 Gm39638 - - 1 C1.1|1 predicted gene, 39638 ncRNA 108168854 Gm42579 - - 3 F1|3 40S ribosomal protein S2 pseudogene pseudo 105247275 XR_882278 Gm42403 - - X A3.3|X predicted gene, 42403 ncRNA 105244913 XR_872797 Gm40436 - - 12 C2|12 predicted gene, 40436 ncRNA 105246626 XR_878079 Gm41891 - - X A1.2|X predicted gene, 41891 ncRNA 100417517 Gm15970 - - 16|16 B2 voltage-dependent anion channel 3 pseudogene pseudo 100036267 Bmch6 - - 13 38.78 cM bone mechanical trait 6 unknown 105246007 XR_875527 Gm41374 - - 15 E2|15 predicted gene, 41374 ncRNA 100035204 Marq2 - - 9 71.49 cM methamphetamine response QTL 2 unknown 624187 Gm6480 EG624187 - X|X A4 OTU domain containing 6B pseudogene pseudo 102638255 Mm.441545 XR_374951 LOC102638255 - - 2 F1 uncharacterized LOC102638255 ncRNA 622794 Gm6358 EG622794 - 16|16 C3.3 predicted gene 6358 protein-coding 67310 Mm.46091 NM_023332 ENSMUSG00000006490 Prl8a9 1600019F10Rik|Ghd15|PLP-C2|PLP-Cbeta|Prlpc2 - 13|13 A3.1 prolactin family8, subfamily a, member 9 protein-coding 11796 Mm.2026 NM_007464 ENSMUSG00000032000 Birc3 AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2 - 9|9 A1 baculoviral IAP repeat-containing 3 protein-coding 27390 Mm.116944 NM_013783 ENSMUSG00000058183 Mmel1 Mell1|NEP2|NEPII|Nl1|SEP - 4|4 E2 membrane metallo-endopeptidase-like 1 protein-coding 75634 Mm.417852 XR_381900 1700013N06Rik - - 12|12 F1 RIKEN cDNA 1700013N06 gene ncRNA 102635908 XR_379384 Gm33125 - - 9 A5.3|9 predicted gene, 33125 ncRNA 105244009 XR_865729 Gm39703 - - 1 H3|1 predicted gene, 39703 ncRNA 108168608 XM_017318815 LOC108168608 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 102641980 Mm.151960 XR_001784952 Gm15860 - - 5 F|5 62.91 cM predicted gene 15860 ncRNA 102633758 Mm.110243 NR_154989 Gm31508 - - 12|12 predicted gene, 31508 ncRNA 59043 Mm.28489 NM_021539 ENSMUSG00000029364 Wsb2 AA673511|Swip2|WSB-2 - 5|5 F WD repeat and SOCS box-containing 2 protein-coding 384931 Gm5364 EG384931 - 9|9 A5.1 spermidine synthase pseudogene pseudo 17475 Mm.153039 NM_010820 ENSMUSG00000028402 Mpdz AI225843|B930003D11Rik|MUPP1 - 4 C3|4 38.0 cM multiple PDZ domain protein protein-coding 224814 Mm.76543 NM_145140 ENSMUSG00000032842 Abcc10 Mrp7|mFLJ00002 - 17|17 C ATP-binding cassette, sub-family C (CFTR/MRP), member 10 protein-coding 52888 D12Bwg0892e - - - DNA segment, Chr 12, Brigham & Women's Genetics 0892 expressed unknown 109371 Fecq2 - - 4 53.43 cM fecundity QTL 2 unknown 61129 D5Mit403 - - 5 50.74 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 403 unknown 100126005 Hfgi1 - - - Helicobacter felis gastric inflammation 1 unknown 105247206 Gm42345 - - 4|4 predicted gene, 42345 ncRNA 105244322 XR_866810 Gm39956 - - 2 G2|2 predicted gene, 39956 ncRNA 105420 AA511280 - - - expressed sequence AA511280 unknown 100503434 Mm.187281 NR_045094 Gm19689 - - 17 E4|17 52.25 cM predicted gene, 19689 ncRNA 59287 Mm.218203 NM_021607 ENSMUSG00000003458 Ncstn 9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253 - 1 H3|1 79.54 cM nicastrin protein-coding 791273 Mm.29432 B630006N21Rik - - - RIKEN cDNA B630006N21 gene unknown 100503785 Igf1it Gm19894 - 10|10 43.7 cM insulin-like growth factor 1, intronic transcript ncRNA 105245533 Gm40978 - - 13|13 predicted gene, 40978 ncRNA 102637203 XR_386615 Gm34076 - - 19 B|19 predicted gene, 34076 ncRNA 108167496 LOC108167496 - - 7 B1 60S ribosomal protein L35a pseudogene pseudo 102633718 Gm31477 - - 4|4 predicted gene, 31477 protein-coding 665943 Mm.348795 NM_001122668 ENSMUSG00000072813 E330014E10Rik - - 5|5 E3 RIKEN cDNA E330014E10 gene protein-coding 102634251 Mm.445371 XR_376255 Gm31881 Gm43455 - 3 H3|3 predicted gene, 31881 ncRNA 66220 Mm.22538 NM_025428 ENSMUSG00000015335 Zdhhc12 1190004A01Rik - 2|2 B zinc finger, DHHC domain containing 12 protein-coding 109280028 LOC109280028 Mm228 - - VISTA enhancer mm228 biological-region 228598 Mm.32582 NM_152993 ENSMUSG00000053552 Ebf4 Ebf3|O/E-4|Olf-1 - 2|2 F1 early B cell factor 4 protein-coding 666322 Gm8046 EG666322 - 14|14 C1 predicted gene 8046 pseudo 100093683 Trnar-acg - - - transfer RNA arginine (anticodon ACG) tRNA 111591 Pmv42 Pmv-42 - - polytropic murine leukemia virus 42 other 665441 Gm15786 EG665441 - 6 G3|6 adaptor-related protein complex AP-1, sigma 3 pseudogene pseudo 70760 6330417A16Rik - - 15|15 RIKEN cDNA 6330417A16 gene protein-coding 62633 D14Mit123 - - 14 34.39 cM DNA segment, Chr 14, Massachusetts Institute of Technology 123 unknown 111423 Mtv34 Mtv-34 - - mammary tumor virus locus 34 other 20284 Mm.12886 NM_009136 ENSMUSG00000031610 Scrg1 AW124307 - 8 B2|8 29.8 cM scrapie responsive gene 1 protein-coding 100041598 XM_011244854 ENSMUSG00000090512 Gm3424 - - 14 A1|14 predicted gene 3424 protein-coding 382793 Mm.296770 NM_001162945 ENSMUSG00000021704 Mtx3 4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514 - 13|13 C3 metaxin 3 protein-coding 105246080 XR_875936 Gm41427 - - 16 A3|16 predicted gene, 41427 ncRNA 14183 Mm.16340 NM_010207 ENSMUSG00000030849 Fgfr2 AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs - 7|7 F3 fibroblast growth factor receptor 2 protein-coding 677858 Igkv8-24 - - 6|6 C1 immunoglobulin kappa chain variable 8-24 other 15331 Mm.319660 NM_016957 ENSMUSG00000003038 Hmgn2 HMG-17|Hmg17 - 4 D3|4 66.47 cM high mobility group nucleosomal binding domain 2 protein-coding 100862025 XM_006542626 ENSMUSG00000099840 Gm21409 - - Y E|Y predicted gene, 21409 protein-coding 100416729 Gm18218 - - 18|18 D3 zinc finger protein 12 pseudogene pseudo 26562 Mm.206206 NM_011986 ENSMUSG00000028833 Ncdn AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin - 4|4 D2.2 neurochondrin protein-coding 110216 Scfr1 - - - stem cell frequency regulator 1 protein-coding 100042554 Mm.464928 XR_001779772 ENSMUSG00000019857 Gm3902 - - 10 B3|10 predicted gene 3902 ncRNA 171095 Mm.213397 NM_134159 ENSMUSG00000030281 Il17rc 1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl - 6|6 E3 interleukin 17 receptor C protein-coding 74476 Mm.440257 NR_015585 ENSMUSG00000072893 4933439C10Rik 2610028M21Rik - 11|11 B1.3 RIKEN cDNA 4933439C10 gene ncRNA 108167377 XR_001782471 LOC108167377 - - 18 E3 uncharacterized LOC108167377 ncRNA 380773 Mm.355701 NM_026958 ENSMUSG00000021040 Slirp 1810035L17Rik - 12|12 D2 SRA stem-loop interacting RNA binding protein protein-coding 100417535 Gm18672 - - 7|7 A3 ring finger and WD repeat domain 2 pseudogene pseudo 27279 Mm.28518 NM_013749 ENSMUSG00000023905 Tnfrsf12a AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR - 17|17 A3.3 tumor necrosis factor receptor superfamily, member 12a protein-coding 667683 Mm.333124 Igkv4-59 EG667683|Gm8760|kk4 - 6|6 C1 immunoglobulin kappa variable 4-59 other 226541 Mm.255165 NM_144876 ENSMUSG00000026705 Klhl20 AI504637|D930050H05Rik|Kleip|mKIAA4210 - 1|1 H2.1 kelch-like 20 protein-coding 208111 Mm.387841 NM_001034857 ENSMUSG00000074158 Zfp976 9830147E19Rik|C330019L16Rik - 7|7 B3 zinc finger protein 976 protein-coding 100169873 Gm11033 - - - predicted gene 11033 protein-coding 30862 C78135 - - - EST C78135 protein-coding 213742 Mm.274770 NR_001463 ENSMUSG00000086503 Xist A430022B11|AI314753 - X D|X 46.15 cM inactive X specific transcripts ncRNA 102465625 NR_105999 ENSMUSG00000098454 Mir7032 Gm27309|mmu-mir-7032 - 5|5 F microRNA 7032 ncRNA 100040317 Gm14598 - - X A5|X predicted gene 14598 pseudo 57751 Mm.280920 NM_021313 ENSMUSG00000026171 Rnf25 0610009H16Rik|AO7 - 1|1 C3 ring finger protein 25 protein-coding 11737 Mm.269088 NM_009672 ENSMUSG00000032249 Anp32a Anp32|I1PP2A|LANP|PHAP1|W91701|pp32 - 9 B|9 33.68 cM acidic (leucine-rich) nuclear phosphoprotein 32 family, member A protein-coding 16897 Mm.285453 NM_008502 ENSMUSG00000020536 Llgl1 AI325176|Lgl1|Llglh|Mgl1 - 11 B2|11 37.81 cM LLGL1 scribble cell polarity complex component protein-coding 66771 Mm.29950 NM_025757 ENSMUSG00000018415 Gid4 4933439F18Rik - 11|11 B2 GID complex subunit 4, VID24 homolog protein-coding 104002 Mm.46088 NM_029636 ENSMUSG00000021439 Ctsq 1600010J02Rik - 13 B2|13 32.65 cM cathepsin Q protein-coding 100504309 Mm.392019 NM_001349093 Smim27 2010003O02Rik|Toporsos - 4 20.24 cM|4 A5 small integral membrane protein 27 protein-coding 105244093 XR_866004 Gm39767 - - 2 A3|2 predicted gene, 39767 ncRNA 51830 D7Trk1e - - - DNA segment, Chr 7, Tularik 1, expressed unknown 61686 D6Mit269 - - 6 14.91 cM DNA segment, Chr 6, Massachusetts Institute of Technology 269 unknown 11602 Mm.189536 NM_009641 ENSMUSG00000027460 Angpt4 ANG-3|ANG-4|Agpt4|Ang3 - 2 G3|2 74.83 cM angiopoietin 4 protein-coding 21675 te t - - lighthead unknown 111619 Tcra-V10 - - - T cell receptor alpha, variable 10 other 101056161 Gm21909 - - 1 A4|1 predicted gene, 21909 pseudo 73062 Mm.322901 NM_033371 ENSMUSG00000033819 Ppp1r16a 2900084E10Rik|Mypt3|R75527 - 15 D3|15 36.25 cM protein phosphatase 1, regulatory (inhibitor) subunit 16A protein-coding 102638337 Gm34926 - - 3|3 predicted gene, 34926 protein-coding 666480 Gm13063 - - 4|4 D2.3 predicted gene 13063 protein-coding 74441 Mm.60362 NM_028942 ENSMUSG00000026331 Slco6c1 4933404A18Rik|C79179 - 1|1 D solute carrier organic anion transporter family, member 6c1 protein-coding 240899 Mm.159799 NM_001013382 ENSMUSG00000040485 Lrrc52 4930413P14Rik - 1|1 H2.3 leucine rich repeat containing 52 protein-coding 667829 Gm8836 EG667829 - 6|6 C1 ornithine decarboxylase, structural 1 pseudogene pseudo 751519 NR_030756 ENSMUSG00000065518 Mir423 Mirn423|mir-423|mmu-mir-423 - 11 B5|11 microRNA 423 ncRNA 102635370 XR_377046 Gm32727 - - 5 C3.3|5 predicted gene, 32727 ncRNA 66736 Mm.244512 NM_025736 ENSMUSG00000022337 Emc2 4921531G14Rik|AV060620|AW209495|Ttc35 - 15|15 B3.2 ER membrane protein complex subunit 2 protein-coding 85082 DXMit66 - - X 60.88 cM DNA segment, Chr X, Massachusetts Institute of Technology 66 unknown 26554 Mm.12665 NM_016716 ENSMUSG00000004364 Cul3 KIAA0617 - 1|1 C5 cullin 3 protein-coding 54650 Mm.294662 NM_019460 ENSMUSG00000006527 Sfmbt1 4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr - 14 B|14 18.99 cM Scm-like with four mbt domains 1 protein-coding 76045 Mm.416975 5830449F15Rik - - 16|16 RIKEN cDNA 5830449F15 gene protein-coding 102632998 XR_378933 ENSMUSG00000110035 Gm30931 Gm45254 - 8 B1.1|8 predicted gene, 30931 ncRNA 382864 Mm.239821 NM_009937 ENSMUSG00000057606 Colq A130034K24Rik - 14|14 B collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase protein-coding 110969 Ctsb-ps Ctsb-rs - - cathepsin B, pseudogene pseudo 208154 Mm.38199 NM_177584 ENSMUSG00000052013 Btla A630002H24 - 16|16 B5 B and T lymphocyte associated protein-coding 403347 F830014O18Rik - - - RIKEN cDNA F830014O18 gene protein-coding 61270 D2Mit225 - - 2 78.72 cM DNA segment, Chr 2, Massachusetts Institute of Technology 225 unknown 19091 Mm.381170 NM_011160 ENSMUSG00000052920 Prkg1 AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b - 19|19 C1 protein kinase, cGMP-dependent, type I protein-coding 21048 T(10;17)11Rl T11Rl - - reciprocal translocation, Chr 10 and 17, Russell 11 other 100416757 Gm18233 - - 2|2 E1 SCAN domain containing 3 pseudogene pseudo 384106 Gm12692 - - 4|4 C6 ras homolog gene family, member G pseudogene pseudo 73590 Mm.82792 NR_040472 ENSMUSG00000101574 1700112H15Rik - - 1|1 H5 RIKEN cDNA 1700112H15 gene ncRNA 100316705 NR_130332 ENSMUSG00000089261 Mir669n mmu-mir-669n - 3 G1|3 50.17 cM microRNA 669n ncRNA 76946 2310029O18Rik - - 4|4 RIKEN cDNA 2310029O18 gene protein-coding 667890 Gm8863 EG667890 - 9 A5.3|9 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 pseudogene pseudo 102640847 XR_874617 Gm17079 - - 14 C1|14 26.63 cM predicted gene 17079 ncRNA 114305 Lrnx11 - - - learning-contextual 11 unknown 102634407 XR_391165 Gm24576 - - 7 A2|7 predicted gene, 24576 ncRNA 102640436 Gm14579 - - X A4|X 23.58 cM predicted gene 14579 pseudo 671182 Gm9520 - - 8|8 C2 predicted gene 9520 pseudo 56749 Mm.23894 NM_020046 ENSMUSG00000031730 Dhodh 2810417D19Rik|AI834883 - 8|8 D3 dihydroorotate dehydrogenase protein-coding 100417764 Gm17046 - - 14|14 A1 esterase D/formylglutathione hydrolase pseudogene pseudo 606529 Gm6061 EG606529|Ppia-ps3_1245.1 - 3 G1|3 peptidylprolyl isomerase A pseudogene 3_1245.1 pseudo 246108 Lifespan2 - - 10 34.83 cM life span 2 unknown 61473 D7Mit109 - - 7 81.84 cM DNA segment, Chr 7, Massachusetts Institute of Technology 109 unknown 493022 Dloc1 - - 2 89.27 cM duration of locomotor activity 1 unknown 102639714 XR_377345 Gm35961 - - 6 A1|6 predicted gene, 35961 ncRNA 100861743 XM_003689125 Gm21180 - - Y D|Y predicted gene, 21180 protein-coding 320411 Mm.273833 NM_177156 A730089K16Rik - - 5|5 C3.3 RIKEN cDNA A730089K16 gene unknown 105244992 XR_870587 Gm40509 - - 9 A4|9 predicted gene, 40509 ncRNA 692182 Mm.370329 Igkv9-129 - - 6|6 C1 immunoglobulin kappa variable 9-129 other 71909 Mm.290410 NM_027999 ENSMUSG00000078762 Haus5 2310022K01Rik - 7 B1|7 HAUS augmin-like complex, subunit 5 protein-coding 111257 Tek-ps Tie2-ps|tieps - - endothelial-specific receptor tyrosine kinase, pseudogene pseudo 404441 Olfr1543-ps1 MOR167-5P|Olfr903-ps1 - 9|9 A5.1 olfactory receptor 1543, pseudogene 1 pseudo 666582 Gm8176 EG666582 - 1|1 B microfibrillar-associated protein 1B pseudogene pseudo 52037 D17Ertd763e - - 17 19.68 cM DNA segment, Chr 17, ERATO Doi 763, expressed unknown 105243011 XR_869837 Gm39059 Gm44804 - 7 E2|7 predicted gene, 39059 ncRNA 624262 Gm6489 EG624262 - 1|1 B Aly/REF export factor pseudogene pseudo 66786 Mm.159186 NM_028910 ENSMUSG00000036744 Olfr701 4932441H21Rik|4933433E02Rik|MOR283-1 - 7|7 E3 olfactory receptor 701 protein-coding 102639622 XR_375422 Gm35888 - - 2 H4|2 predicted gene, 35888 ncRNA 100417540 Gm17219 - - 7|7 E3 ribosomal protein S8, pseudogene 1 pseudogene pseudo 319977 Mm.444075 A530079E22Rik - - 1|1 D RIKEN cDNA A530079E22 gene unknown 77982 Mm.146702 NR_131103 ENSMUSG00000100166 B230110G15Rik - - 6|6 G1 RIKEN cDNA B230110G15 gene ncRNA 105243341 Gm39290 - - 9|9 predicted gene, 39290 protein-coding 107624 C6r - - - complement component 6, regulatory unknown 102636082 XM_017313070 Ccdc168 - - 1 C1.1 coiled-coil domain containing 168 protein-coding 102635743 XR_379619 Gm33004 - - 9 D|9 predicted gene, 33004 ncRNA 50781 Mm.55143 NM_015814 ENSMUSG00000030772 Dkk3 AW061014|C87148|dkk-3|mDkk-3 - 7|7 F1 dickkopf WNT signaling pathway inhibitor 3 protein-coding 210004 Mm.386847 NM_178664 ENSMUSG00000046605 B3gntl1 6030413G23Rik - 11|11 E2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 protein-coding 102633531 Gm28814 - - Y|Y predicted gene 28814 protein-coding 18363 Mm.222846 NM_146315 ENSMUSG00000043698 Olfr62 H12|IH12|MOR258-5 - 4|4 D2.1 olfactory receptor 62 protein-coding 108168166 XR_001781281 Gm46457 - - 14 D1|14 predicted gene, 46457 ncRNA 105246978 Mm.443651 XM_017321263 Gm42166 - - 5 E5|5 predicted gene, 42166 protein-coding 110381 Pgame2 Pgam2e - - phosphoglycerate mutase elevated 2 protein-coding 258212 Olfr650-ps1 MOR31-14 - 7|7 E3 olfactory receptor 650, pseudogene 1 pseudo 105246810 XR_879059 Gm42034 - - 8 C3|8 predicted gene, 42034 ncRNA 102635450 LOC102635450 - - 14 E4 60S ribosomal protein L39 pseudogene pseudo 67898 Mm.20818 NM_026441 ENSMUSG00000028779 Pef1 2600002E23Rik|Peflin - 4|4 D2.2 penta-EF hand domain containing 1 protein-coding 108021852 LOC108021852 - - - Sox9 promoter region biological-region 105246510 Gm41791 - - 18|18 predicted gene, 41791 ncRNA 100417006 Gm18357 - - 7|7 B4 MAS-related GPR, member B8 pseudogene pseudo 329316 Mm.411927 XR_373825 ENSMUSG00000103923 Gm37896 A930038G18 - 1|1 H5 predicted gene, 37896 ncRNA 18786 Mm.490101 NM_172695 ENSMUSG00000028577 Plaa 2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3 - 4 C5|4 43.34 cM phospholipase A2, activating protein protein-coding 62505 D10Mit170 - - 10 24.71 cM DNA segment, Chr 10, Massachusetts Institute of Technology 170 unknown 108497 Emvc1 Emvc-1 - - endogenous ecotropic MuLV, castaneus type 1 other 62657 D15Mit105 - - 15 33.42 cM DNA segment, Chr 15, Massachusetts Institute of Technology 105 unknown 105242870 XR_880173 Gm38959 - - 11 D|11 predicted gene, 38959 ncRNA 102638493 Gm35044 - - Y|Y tRNA methyltransferase 112 homolog pseudo 102635424 XR_373754 Gm32767 - - 1 H4|1 predicted gene, 32767 ncRNA 620899 Gm6189 EG620899 - 1|1 C5 GLE1 RNA export mediator pseudogene pseudo 360108 D17Jcs100 - - - DNA segment, Chr 17, John C. Schimenti 100 unknown 73212 Mm.84294 NM_028469 ENSMUSG00000053553 3110082I17Rik AW411904 - 5|5 G2 RIKEN cDNA 3110082I17 gene protein-coding 102635276 XR_390555 Gm32657 - - 4 B1|4 predicted gene, 32657 ncRNA 13226 Mm.442051 NM_007848 ENSMUSG00000074442 Defa31 CRS4C-2|CRS4C2|CRS4C2b|CRS4C2c|CRS4C2d|CRS4C3a|CRS4C3a2|CRS4C3b|CRS4C3c|CRS4C3d|CRS4C3e|Defa-rs7|Defcr-rs7 - 8|8 A2 defensin, alpha, 31 protein-coding 103141 AI120166 - - - expressed sequence AI120166 unknown 102632441 XR_386396 Gm30513 - - 18 E3|18 predicted gene, 30513 ncRNA 69699 Mm.158296 NM_027173 ENSMUSG00000045331 2310079G19Rik - - 16|16 C3.3 RIKEN cDNA 2310079G19 gene protein-coding 100048984 Mm.484740 Gm13764 - - 2|2 predicted gene 13764 unknown 102640866 XR_376215 Gm36831 - - 3 H2|3 predicted gene, 36831 ncRNA 170648 Mm.390988 NM_130868 ENSMUSG00000057443 Olfr138 MOR256-40P|Olfr89 - 17|17 B1 olfactory receptor 138 protein-coding 112017 Bw9 - - - body weight QTL 9 unknown 102633828 XR_001779359 Gm31559 - - 9 F3|9 predicted gene, 31559 ncRNA 216152 Mm.29678 NM_181681 ENSMUSG00000035835 Plppr3 Lppr3|Prg2 - 10|10 C1 phospholipid phosphatase related 3 protein-coding 71237 4933435G04Rik - - 7|7 RIKEN cDNA 4933435G04 gene protein-coding 414119 Mm.394345 E330010L02Rik - - - RIKEN cDNA E330010L02 gene ncRNA 668624 Gm9274 EG668624 - 14|14 E1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 207742 Mm.440230 NM_172448 ENSMUSG00000034177 Rnf43 4732452J19Rik - 11|11 C ring finger protein 43 protein-coding 320801 A630035G10Rik - - 1|1 RIKEN cDNA A630035G10 gene protein-coding 104795949 NR_128568 ENSMUSG00000106236 Gm38670 Mir9769|mir-9769|mmu-mir-9769 - 7|7 B1 predicted gene, 38670 ncRNA 102639244 XR_373350 Gm35600 - - 1 B|1 predicted gene, 35600 ncRNA 676527 XR_388682 ENSMUSG00000086962 Gm12248 Gm247 - 11|11 B1.3 predicted gene 12248 unknown 107729 Ubg UBA52 - - ubiquitin, beta-galactosidase related protein-coding 102637704 XR_384083 Gm34446 - - 15 C|15 predicted gene, 34446 ncRNA 67166 Mm.271178 NM_026011 ENSMUSG00000030105 Arl8b 2610313E07Rik|3100002J04Rik|Arl10c|gie1 - 6|6 E2 ADP-ribosylation factor-like 8B protein-coding 11764 Mm.274816 NM_007454 ENSMUSG00000009090 Ap1b1 Adtb1|b2b1660Clo - 11|11 A1 adaptor protein complex AP-1, beta 1 subunit protein-coding 102366 BB211804 - - - expressed sequence BB211804 unknown 20812 srn - - - siren unknown 102637309 XR_870495 Gm34154 - - 8 B3.3|8 predicted gene, 34154 ncRNA 102467227 n-TAagc2 n-Ta2 - - nuclear encoded tRNA alanine 2 (anticodon AGC) tRNA 100628576 NR_039555 ENSMUSG00000104884 Mir5046 mmu-mir-5046|mu-mir-5046 - 19 A|19 5.08 cM microRNA 5046 ncRNA 105242598 XR_868801 Gm38766 - - 6 A1|6 predicted gene, 38766 ncRNA 29831 Del(11)14Brd - - - deletion, Chr 11, Bradley 14 other 100035851 W10q18 - - - weight 10 weeks QTL 18 unknown 73755 Mm.444591 4833419A21Rik - - 4|4 RIKEN cDNA 4833419A21 gene protein-coding 100502592 Mm.483903 XM_003084652 LOC100502592 - - 6 F3 proline-rich proteoglycan 2-like protein-coding 17928 Mm.16528 NM_031189 ENSMUSG00000026459 Myog MYF4|bHLHc3|myo - 1 E4|1 58.18 cM myogenin protein-coding 108167407 LOC108167407 - - 7 A1 endogenous retrovirus group K member 25 Pol protein-like pseudo 14767 Mm.389159 NM_010341 ENSMUSG00000026237 Nmur1 FM-3|Gpr66|NMU-R1|NMU1R|NmU-R - 1|1 C5 neuromedin U receptor 1 protein-coding 102636027 XR_375915 Gm33215 - - 3 F2.2|3 predicted gene, 33215 ncRNA 19216 Mm.213000 NM_013641 ENSMUSG00000019464 Ptger1 EP1|Ptgerep1 - 8 C2|8 40.22 cM prostaglandin E receptor 1 (subtype EP1) protein-coding 19893 Mm.247556 NM_011285 ENSMUSG00000031174 Rpgr Rd9|Rp3h - X|X A1.1 retinitis pigmentosa GTPase regulator protein-coding 73772 Mm.444684 NR_040729 4930430J02Rik - - 9|9 B RIKEN cDNA 4930430J02 gene ncRNA 668051 Gm8948 EG668051 - 10|10 B1 predicted gene 8948 pseudo 100312489 Vmn1r-ps23 - - 6 B3|6 27.82 cM vomeronasal 1 receptor, pseudogene 23 pseudo 100861672 Gm21122 - - 7 B3|7 zinc finger, MYND-type containing 8 pseudogene pseudo 16526 Mm.33304 NM_010607 ENSMUSG00000037624 Kcnk2 A430027H14Rik|AI848635|TREK-1 - 1|1 H6 potassium channel, subfamily K, member 2 protein-coding 30003 D10Jhu7 - - - DNA segment, Chr 10, Johns Hopkins University 7 unknown 622731 XM_011249644 Gm6348 EG622731 - 5|5 E3 predicted gene 6348 protein-coding 73709 Mm.261182 2410125D13Rik - - 1|1 C3 RIKEN cDNA 2410125D13 gene protein-coding 80509 Mm.259567 NM_020000 ENSMUSG00000006392 Med8 2210021A15Rik|AB041805|ARC32 - 4 D2.1|4 mediator complex subunit 8 protein-coding 100861477 NR_046124 ENSMUSG00000095131 n-R5s110 Rn5s7 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 110 rRNA 105246608 XR_877965 Gm41875 - - 19 D2|19 predicted gene, 41875 ncRNA 381338 Mm.487137 NM_028403 ENSMUSG00000048814 Lonrf2 2900060P06Rik|AI851349 - 1|1 B LON peptidase N-terminal domain and ring finger 2 protein-coding 102634862 XR_882153 Gm32345 - - 7 C|7 predicted gene, 32345 ncRNA 100417972 Gm18926 - - 14|14 E2.1 POU domain, class 5, transcription factor 1 pseudogene pseudo 100036069 Gbrln - - 7 33.88 cM granular brain lesions unknown 53759 D11H4S10 D4S10h - - DNA segment, Chr 11, human D4S10 unknown 14433 Mm.304088 NM_008084 ENSMUSG00000057666 Gapdh Gapd - 6 F2|6 59.32 cM glyceraldehyde-3-phosphate dehydrogenase protein-coding 16287 In(4)56Rk In56Rk|Rd4 - - inversion, Chr 4, Roderick 56 other 102638647 XR_382611 Gm35161 - - 13 B3|13 predicted gene, 35161 ncRNA 102636447 XR_380150 Gm33510 - - 10 A3|10 predicted gene, 33510 ncRNA 73174 Mm.27882 NM_198100 ENSMUSG00000038517 Tbkbp1 3110043L15Rik|ProSAPiP2|SINTBAD - 11|11 D TBK1 binding protein 1 protein-coding 16098 Mm.333124 Igkv1-117 Cr1|Gm16797|IgK|Igk-V21|V(k)45.1 - 6 C1|6 31.07 cM immunoglobulin kappa variable 1-117 other 100416194 Gm14987 - - X|X E3 predicted gene 14987 pseudo 545901 Atp6v0c-ps1 Atp6c|Atp6c-rs1|Atp6c1|Atp6c2|Atp6l-ps1 - 7 A1|7 2.55 cM ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 1 pseudo 75484 Mm.396153 1700007H22Rik - - 16|16 RIKEN cDNA 1700007H22 gene protein-coding 102639031 XR_382619 Gm35444 - - 13 B3|13 predicted gene, 35444 ncRNA 102635817 Gm33062 - - 4|4 predicted gene, 33062 ncRNA 19108 Mm.290338 NM_016979 ENSMUSG00000035725 Prkx PKX1|Pkare - X|X B protein kinase, X-linked protein-coding 404526 Olfr1492-ps1 GA_x5J8B7W6KF8-5344390-5343561 - 19|19 A olfactory receptor 1492, pseudogene 1 pseudo 110750 Mm.22417 NM_023565 ENSMUSG00000002718 Cse1l 2610100P18Rik|AA407533|Capts|Cas|Xpo2 - 2 H3|2 87.22 cM chromosome segregation 1-like (S. cerevisiae) protein-coding 102637966 XR_001781770 Nckap5los 4921518J05Rik - 15|15 F1 NCK-associated protein 5-like, opposite strand ncRNA 77248 Mm.410768 NR_045737 ENSMUSG00000116360 9430014N10Rik - - 15|15 E3 RIKEN cDNA 9430014N10 gene ncRNA 20853 Mm.73276 NM_011490 ENSMUSG00000039536 Stau1 5830401L18Rik|AW549911|C85792|Stau - 2|2 H3 staufen double-stranded RNA binding protein 1 protein-coding 26357 Mm.333096 NM_011920 ENSMUSG00000029802 Abcg2 ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1 - 6 B3|6 27.82 cM ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 100417179 Gm18439 - - X|X C1 melanoma antigen family B, 16 pseudogene pseudo 102633353 XR_384882 Gm31198 - - 16 B5|16 predicted gene, 31198 ncRNA 246691 Mm.437416 NM_001044382 ENSMUSG00000070368 Prok1 EG-VEGF - 3|3 F2.3 prokineticin 1 protein-coding 102641163 XR_877473 Gm38165 - - 18 E1|18 predicted gene, 38165 ncRNA 105245422 LOC105245422 - - 12 A1.2 uncharacterized protein C2orf16-like pseudo 102636551 LOC102636551 - - 15 E2 gamma-secretase subunit PEN-2 pseudogene pseudo 56095 Mm.29795 NM_025310 ENSMUSG00000020706 Ftsj3 AA537063|AU045295|C79843|D11Ertd400e|Epcs3 - 11 E1|11 68.89 cM FtsJ RNA methyltransferase homolog 3 (E. coli) protein-coding 21349 Mm.239869 NM_011527 ENSMUSG00000028717 Tal1 Hpt|SCL/tal-1|Scl|bHLHa17|tal-1 - 4 D1|4 52.73 cM T cell acute lymphocytic leukemia 1 protein-coding 170787 Mm.203954 NM_199198 ENSMUSG00000062906 Hdac10 AW548891|Hd10 - 15|15 E3 histone deacetylase 10 protein-coding 100504356 Gm20190 - - 6|6 61.85 cM predicted gene, 20190 ncRNA 404330 Mm.377944 NM_207567 ENSMUSG00000075117 Olfr1198 GA_x5J8B7W62NC-67655-66851|GA_x6K02T2Q125-50221692-50220766|MOR225-13 - 2|2 E1 olfactory receptor 1198 protein-coding 19242 Mm.279690 NM_008973 ENSMUSG00000029838 Ptn HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1 - 6 B1|6 15.48 cM pleiotrophin protein-coding 62230 D17Mit39 - - 17 45.64 cM DNA segment, Chr 17, Massachusetts Institute of Technology 39 unknown 111494 Xmmv58 Xmmv-58|Xp-17 - - xenotropic-MCF leukemia virus 58 other 100036350 Bodwt1 - - - body weight 1 unknown 100043177 Trav12d-1 Gm13968 - 14 27.12 cM|14 C2 T cell receptor alpha variable 12D-1 other 105244744 XR_868412 Gm40300 - - 5 B3|5 predicted gene, 40300 ncRNA 102633057 XR_373208 Gm30974 - - 1 A2|1 predicted gene, 30974 ncRNA 61212 D1Mit180 - - 1 38.2 cM DNA segment, Chr 1, Massachusetts Institute of Technology 180 unknown 258552 Mm.223084 NM_146559 ENSMUSG00000044106 Olfr868 MOR145-4 - 9|9 A3 olfactory receptor 868 protein-coding 19542 Rb(4.12)1Tu Rb1Tu - - Robertsonian translocation, Chr 4 and 12, Tubingen 1 other 102639308 XR_377961 Gm35649 - - 6 E3|6 predicted gene, 35649 ncRNA 414359 Gm5417 EG414359 - 15|15 E1 vitamin K epoxide reductase complex, subunit 1-like 1 pseudogene 1 pseudo 101936 AA408456 - - - expressed sequence AA408456 protein-coding 102640202 Gm36326 - - 8|8 predicted gene, 36326 ncRNA 110371 Tcrd-V6 - - - T cell receptor delta, variable 6 other 105243359 XR_870578 Gm39306 - - 9 A3|9 predicted gene, 39306 ncRNA 99149 B130033B12Rik AL023072 - - RIKEN cDNA B130033B12 gene protein-coding 329693 Mm.331122 NM_183222 ENSMUSG00000048031 Fcrl5 Fcrh3|mBXMH2 - 3|3 F1 Fc receptor-like 5 protein-coding 102632493 Mm.108514 XR_377375 4930554P06Rik - - 6|6 A3.1 RIKEN cDNA 4930554P06 gene ncRNA 110783 Rvil1 RLVil|Rvil-1 - - radiation induced leukemia virus susceptibility protein-coding 110281 Ctl2 Ctl-2 - - cytotoxic T lymphocyte response 2 protein-coding 105244875 XR_872698 Gm40406 - - 12 B1|12 predicted gene, 40406 ncRNA 108005 Igkv3-7 IgK21-7|Igk-V21-7 - 6|6 C1 immunoglobulin kappa variable 3-7 other 102633043 Gm30964 - - 12|12 predicted gene, 30964 pseudo 654475 Gm12671 EG654475 - 4|4 C5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 72068 Mm.351553 NM_028082 ENSMUSG00000020166 Cnot2 2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650 - 10|10 D2 CCR4-NOT transcription complex, subunit 2 protein-coding 100316832 NR_035435 ENSMUSG00000084564 Mir1895 Mirn1895|mmu-mir-1895 - 3 G3|3 62.12 cM microRNA 1895 ncRNA 630951 Gm7049 EG630951|Gm1819 - 13|13 B3 malic enzyme 1, NADP(+)-dependent, cytosolic pseudogene pseudo 61335 D3Mit199 - - 3 54.67 cM DNA segment, Chr 3, Massachusetts Institute of Technology 199 unknown 382109 Mm.246849 NM_198674 ENSMUSG00000059547 Fbxw26 EG382109|Gm5163 - 9 F2|9 F-box and WD-40 domain protein 26 protein-coding 56456 Mm.41077 NM_019673 ENSMUSG00000027671 Actl6a 2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802 - 3|3 A3 actin-like 6A protein-coding 102637570 XR_871991 Gm34346 - - 10 C3|10 predicted gene, 34346 ncRNA 61286 D2Mit268 - - 2 21.85 cM DNA segment, Chr 2, Massachusetts Institute of Technology 268 unknown 99217 AU022695 - - - expressed sequence AU022695 protein-coding 17740 TrnQ - - - tRNA tRNA 108167662 XR_001779216 Gm46118 - - 9 D|9 predicted gene, 46118 ncRNA 69595 Mm.396413 XR_388303 Frmd8os 2310035N23Rik|Gm9783 - 19 A|19 FERM domain containing 8, opposite strand unknown 16545 Mm.6228 NM_008438 ENSMUSG00000019932 Kera CNA2|SLRR2B - 10 C3|10 50.34 cM keratocan protein-coding 102635640 XR_374687 Gm32927 - - 2 C3|2 predicted gene, 32927 ncRNA 105246229 XR_876654 Gm41541 - - 17 A3.2|17 predicted gene, 41541 ncRNA 100035220 Mglcq1 - - - M16 glucose QTL 1 unknown 67983 Mm.394441 NM_001040136 ENSMUSG00000030887 Pdzd9 4930408O21Rik - 7|7 F2 PDZ domain containing 9 protein-coding 100124371 Traj18 Gm17009 - 14|14 C2 T cell receptor alpha joining 18 other 240669 Calhm3 EG240669 - 19|19 C3 calcium homeostasis modulator 3 pseudo 105245151 XR_873095 Gm40644 - - 13 A1|13 predicted gene, 40644 ncRNA 269999 Mm.36852 NM_198424 ENSMUSG00000043964 Orai3 9930124N15|BC061259|Tmem142c - 7|7 F3 ORAI calcium release-activated calcium modulator 3 protein-coding 57269 Mm.88822 NM_020512 ENSMUSG00000059887 Olfr1507 MOR244-1|Mor28|Or28 - 14|14 C2 olfactory receptor 1507 protein-coding 668906 Gm14098 - - 2|2 F2 high mobility group box 2 pseudogene pseudo 68725 Mm.45741 NM_001167996 ENSMUSG00000046999 1110032F04Rik AI115547 - 3|3 E1 RIKEN cDNA 1110032F04 gene protein-coding 108168410 Gm46649 - - 19 C2|19 60S ribosomal protein L27 pseudogene pseudo 100526665 Gm21006 - - 5 E1|5 phosphoglycerate kinase 1, pseudogene pseudo 111589 Pmv36 Pmv-36 - - polytropic murine leukemia virus 36 other 105245850 XR_874935 Gm41239 - - 14 E2.3|14 predicted gene, 41239 ncRNA 639802 Prb3-ps EG625913|Gm7279|Prb3 - 6|6 F3 proline-rich protein BstNI subfamily 3, pseudogene pseudo 259280 Ap7q - - 7 31.19 cM alcohol preference 7 QTL unknown 11870 Mm.261071 NM_009710 ENSMUSG00000030996 Art1 ADPRT|ARTC1|Yac-1 - 7 E2|7 54.71 cM ADP-ribosyltransferase 1 protein-coding 70562 5730419A17Rik - - X|X RIKEN cDNA 5730419A17 gene protein-coding 20482 Mm.15406 NM_011386 ENSMUSG00000027660 Skil Skir|SnoN|sno - 3 A3|3 15.12 cM SKI-like protein-coding 102638130 XR_384827 Gm34766 - - 16 B3|16 predicted gene, 34766 ncRNA 67672 Mm.30983 NR_027874 ENSMUSG00000089889 0610040B10Rik - - 5|5 G2 RIKEN cDNA 0610040B10 gene ncRNA 102635530 XR_384404 Gm32840 - - 15 F1|15 predicted gene, 32840 ncRNA 73086 Mm.220417 NM_153587 ENSMUSG00000021180 Rps6ka5 3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5 - 12|12 E ribosomal protein S6 kinase, polypeptide 5 protein-coding 52013 Mm.254169 NM_177464 ENSMUSG00000025184 R3hcc1l 1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88 - 19 C3|19 36.47 cM R3H domain and coiled-coil containing 1 like protein-coding 100416808 Zfp422-ps Krox-25-2|Zfp422-rs1 - 17|17 B1 zinc finger protein 422, pseudogene pseudo 74538 9030409K20Rik - - 6|6 RIKEN cDNA 9030409K20 gene protein-coding 105242776 Mm.121980 XR_869453 Gm38901 Gm42810 - 6 F3|6 predicted gene, 38901 ncRNA 406217 Mm.336245 NM_212457 ENSMUSG00000047844 Bex4 - - X F1|X brain expressed X-linked 4 protein-coding 105245253 XR_871921 Gm40732 - - 10 C1|10 predicted gene, 40732 ncRNA 100379610 Mm.754 NR_104047 ENSMUSG00000085297 Gm11651 - - 11 E1|11 predicted gene 11651 ncRNA 76742 Mm.28160 NM_029721 ENSMUSG00000028136 Snx27 5730552M22Rik|ESTM45|ESTM47|R75405 - 3|3 F2.1 sorting nexin family member 27 protein-coding 329260 Mm.337604 NM_181347 ENSMUSG00000056268 Dennd1b 4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik - 1|1 E4 DENN/MADD domain containing 1B protein-coding 114888 Rmcs5 - - 17|17 response to metastatic cancers 5 protein-coding 73435 Mm.116705 NM_028540 ENSMUSG00000026592 Tex35 1700057K13Rik - 1|1 G3 testis expressed 35 protein-coding 216831 Mm.134338 NM_175003 ENSMUSG00000033389 Arhgap44 6330543G20|AI840762|AU040829|AW493732|Rich2 - 11|11 B3 Rho GTPase activating protein 44 protein-coding 100862345 XM_011249881 Gm21660 - - Y A1|Y predicted gene, 21660 protein-coding 61319 D3Mit163 - - 3 80.67 cM DNA segment, Chr 3, Massachusetts Institute of Technology 163 unknown 108168529 Gm46712 - - Y C3|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 442826 A930006L05Rik - - - RIKEN cDNA A930006L05 gene protein-coding 100039027 Mm.482948 NR_038067 Gm2011 - - 3 B|3 predicted gene 2011 pseudo 102640851 XR_384128 Gm36819 - - 15 D1|15 predicted gene, 36819 ncRNA 72229 Mm.234192 NR_040720 ENSMUSG00000085831 1700003G13Rik - - 9|9 A5.2 RIKEN cDNA 1700003G13 gene ncRNA 105246455 XR_877464 Gm41742 - - 18 D3|18 predicted gene, 41742 ncRNA 102633671 LOC102633671 - - 10 C1 ATP synthase subunit f, mitochondrial pseudogene pseudo 320070 Mm.40283 D830012I24Rik - - X|X RIKEN cDNA D830012I24 gene protein-coding 105243895 XR_865316 Gm39616 - - 1 B|1 predicted gene, 39616 ncRNA 544792 Mm.136943 NM_001347057 ENSMUSG00000097886 Gsg1l2 Gm12302 - 11|11 B3 GSG1-like 2 protein-coding 60809 D4Mit39 - - 4 16.92 cM DNA segment, Chr 4, Massachusetts Institute of Technology 39 unknown 75512 Mm.46195 NM_145451 ENSMUSG00000004341 Gpx6 1700020G18Rik|Ry2d1|olfactory - 13|13 A3.1 glutathione peroxidase 6 protein-coding 73905 4833412E19Rik - - 6|6 RIKEN cDNA 4833412E19 gene protein-coding 100061 Mm.26760 NM_175305 ENSMUSG00000049799 Lrrc19 9130022A01Rik|AI314124|AL022954|AW261791 - 4|4 C5 leucine rich repeat containing 19 protein-coding 69307 Mm.107605 NM_153390 ENSMUSG00000045378 Pxt1 1700001G18Rik|Stepp - 17|17 A3.3 peroxisomal, testis specific 1 protein-coding 28055 D16Ium14e D16Ium14 - - DNA segment, Chr 16, Indiana University Medical 14, expressed unknown 99542 Mm.394921 NR_040386 ENSMUSG00000097745 AI115009 - - 3 H3|3 expressed sequence AI115009 ncRNA 234684 Mm.381717 NM_177449 ENSMUSG00000041679 Lrrc29 A630024J02Rik|FBL9|FBXL9 - 8|8 D3 leucine rich repeat containing 29 protein-coding 102636490 XR_390881 Gm33542 - - 4 D3|4 predicted gene, 33542 ncRNA 102631726 LOC102631726 - - 4 E1 60S acidic ribosomal protein P1 pseudogene pseudo 105246037 XR_875654 Gm41398 - - 15 F1|15 predicted gene, 41398 ncRNA 80718 Mm.246753 NM_030554 ENSMUSG00000024511 Rab27b 2310021G14Rik|B130064M09Rik - 18 E2|18 43.89 cM RAB27B, member RAS oncogene family protein-coding 627268 Mm.391335 XR_387130 ENSMUSG00000084806 Gm15232 - - X|X F5 predicted gene 15232 ncRNA 228482 Mm.45753 NM_181416 ENSMUSG00000041219 Arhgap11a 6530401L14Rik|mKIAA0013 - 2|2 E4 Rho GTPase activating protein 11A protein-coding 105246807 XM_011248563 Gm42031 - - 8 C3|8 predicted gene, 42031 protein-coding 100503205 Gm15067 - - X|X 65.36 cM predicted gene 15067 protein-coding 100034888 Thcr - - - T helper cell response unknown 100039574 Mm.458579 NM_001160135 ENSMUSG00000094739 Gm20806 - - Y|Y D predicted gene, 20806 protein-coding 105245065 Mm.205593 Gm40568 - - 12|12 predicted gene, 40568 ncRNA 102634398 XR_865971 Gm31990 - - 2 A1|2 predicted gene, 31990 ncRNA 116613 D7Tem15 - - - DNA segment, Chr 7, Tempel 15 unknown 100504733 Mm.255309 NM_176956 ENSMUSG00000047828 A730018C14Rik - - 12|12 F1 RIKEN cDNA A730018C14 gene ncRNA 66101 Mm.304080 NM_028677 ENSMUSG00000060288 Ppih 1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e - 4 D2.1|4 55.34 cM peptidyl prolyl isomerase H protein-coding 53770 DXHXS674 DXS674h - - DNA segment, Chr X, human DXS674 unknown 100035249 Hdlq36 - - - HDL QTL 36 unknown 78288 5330421F21Rik - - 4|4 RIKEN cDNA 5330421F21 gene protein-coding 102639905 Gm36106 - - 14|14 predicted gene, 36106 ncRNA 106326 Mm.486405 NM_176840 ENSMUSG00000022807 Osbpl11 9430097N02Rik|AI132306|AU019795|ORP-11 - 16|16 B3 oxysterol binding protein-like 11 protein-coding 209589 Gm4761 EG209589 - 6|6 C1 ribosomal protein S7 pseudogene pseudo 623273 Mm.422971 NR_040440 ENSMUSG00000090098 Alms1-ps2 Gm6413 - 6 C3|6 ALMS1, centrosome and basal body associated, pseudogene 2 pseudo 66117 Mm.158971 NM_025363 ENSMUSG00000019689 Fmc1 1110001J03Rik - 6|6 B1 formation of mitochondrial complex V assembly factor 1 protein-coding 105245588 XR_873808 Gm41020 - - 13 C3|13 predicted gene, 41020 ncRNA 102634055 XR_386810 Gm31734 - - 19 D2|19 predicted gene, 31734 ncRNA 102635346 XR_378712 Gm32709 - - 8 A1.1|8 predicted gene, 32709 ncRNA 100416338 Gm18050 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 102467583 n-TFgaa6 n-Tf6 - 19 A|19 nuclear encoded tRNA pheylalanine 6 (anticodon GAA) tRNA 105245469 Mm.247416 XR_001780902 Gm40918 - - 13 A3.3|13 predicted gene, 40918 ncRNA 105246755 XR_878675 Gm41997 - - 3 A1|3 predicted gene, 41997 ncRNA 100035864 Manln18 - - 17 12.53 cM mandible length 18 unknown 493068 Lgth1 - - 2 55.14 cM body length 1 unknown 70951 Mm.383235 NM_027617 ENSMUSG00000028188 Spata1 4921536I21Rik|AV266943|SP-2 - 3|3 H2 spermatogenesis associated 1 protein-coding 56716 Mm.289516 NM_019988 ENSMUSG00000024142 Mlst8 0610033N12Rik|AA409454|AI505104|AI851821|Gbl - 17|17 A3.3 MTOR associated protein, LST8 homolog (S. cerevisiae) protein-coding 102637384 XR_385806 Gm34211 - - 17 E3|17 predicted gene, 34211 ncRNA 102635257 Mm.441096 XR_388237 Gm32643 - - 8 E2|8 predicted gene, 32643 ncRNA 102631734 Gm30000 - - 3|3 predicted gene, 30000 ncRNA 102639079 XR_375067 Gm35479 - - 2 G2|2 predicted gene, 35479 ncRNA 384763 Mm.276279 NM_001024928 ENSMUSG00000054893 Zfp667 A830025F02Rik|Mip1|ZNF667 - 7|7 A1 zinc finger protein 667 protein-coding 233801 Mm.240412 NM_178414 ENSMUSG00000047026 Acsm4 O-MACS|OMACS - 7|7 F2 acyl-CoA synthetase medium-chain family member 4 protein-coding 108168708 LOC108168708 - - - 60S acidic ribosomal protein P1 pseudogene pseudo 100416201 Gm15159 - - X|X F3 ribosomal protein L7 pseudogene pseudo 19637 Rb(9.19)163H Rb163H - - Robertsonian translocation, Chr 9 and 19, Harwell 163 other 100041639 Mm.440445 NM_001123367 ENSMUSG00000079710 Gm3448 - - 17 A2|17 predicted gene 3448 protein-coding 19172 Mm.368 NM_008945 ENSMUSG00000005779 Psmb4 Pros-27 - 3 F2.1|3 40.74 cM proteasome (prosome, macropain) subunit, beta type 4 protein-coding 108168060 XR_001780852 Gm46398 - - 13 D1|13 predicted gene, 46398 ncRNA 100862464 LOC100862464 - - - THAP domain-containing protein 1-like pseudo 620147 Pvrig-ps EG620147|Pvrig - 5|5 G2 poliovirus receptor related immunoglobulin domain containing, pseudogene pseudo 12766 Mm.12876 NM_009910 ENSMUSG00000050232 Cxcr3 Cd183|Cmkar3 - X D|X 44.58 cM chemokine (C-X-C motif) receptor 3 protein-coding 105244780 XR_868547 Gm40332 Gm42978 - 5 G1.3|5 predicted gene, 40332 ncRNA 51937 D3Ertd797e - - - DNA segment, Chr 3, ERATO Doi 797, expressed unknown 78196 Mm.399347 4930546J17Rik - - - RIKEN cDNA 4930546J17 gene protein-coding 629029 Gm6939 - - 7|7 F3 sulfotransferase family 1A, phenol-preferring, member 1 pseudogene pseudo 100302592 NR_028273 ENSMUSG00000064741 Snord14a Rnu14|U14 - 7|7 F1 small nucleolar RNA, C/D box 14A snoRNA 52991 O1T7 - - - DNA segment, O1T7 unknown 404452 Olfr953-ps1 GA_x5J8B7TR73U-24-691 - 9|9 A5.1 olfactory receptor 953, pseudogene 1 pseudo 668453 Gm9176 EG668453 - 10|10 D3 predicted gene 9176 pseudo 667162 Gm8489 EG667162 - 8|8 C4 karyopherin alpha 7 (importin alpha 8) pseudogene pseudo 258569 Mm.377571 NM_146576 ENSMUSG00000045479 Olfr459 MOR120-1 - 6|6 B2.1 olfactory receptor 459 protein-coding 105243209 XR_870498 Gm39191 - - 8 B3.3|8 predicted gene, 39191 ncRNA 624144 Gm6475 EG624144 - 17|17 A1 CD2-associated protein pseudogene pseudo 276865 Mm.377871 NM_207253 ENSMUSG00000060170 Olfr1371 GA_x6K02T2QP88-3214035-3214970|MOR256-58 - 11|11 B1.3 olfactory receptor 1371 protein-coding 100416761 Gm15746 - - 16|16 B1 predicted gene 15746 pseudo 108168367 XM_017318018 LOC108168367 - - 18 E1 uncharacterized LOC108168367 protein-coding 99870 Mm.491321 XR_001783872 AW047730 - - 3 F1|3 expressed sequence AW047730 unknown 100038703 Gm13033 - - 4 D2.3|4 prostaglandin-endoperoxide synthase 2 pseudogene pseudo 15496 Mm.17910 NM_008295 ENSMUSG00000038092 Hsd3b5 - - 3|3 F2.2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5 protein-coding 100416537 Gm12073 - - 11|11 A3.3 ribosomal protein L17 pseudogene pseudo 622480 NM_001144949 ENSMUSG00000028784 Spocd1 - - 4|4 D2.2 SPOC domain containing 1 protein-coding 16988 Mm.19379 NM_010734 ENSMUSG00000073412 Lst1 B144 - 17 B1|17 18.59 cM leukocyte specific transcript 1 protein-coding 546980 Mm.469905 NM_001105187 ENSMUSG00000090774 Vmn2r74 EG546980 - 7|7 D3 vomeronasal 2, receptor 74 protein-coding 54667 Mm.30455 NM_001081182 ENSMUSG00000060671 Atp8b2 Id - 3|3 F1 ATPase, class I, type 8B, member 2 protein-coding 102466789 NR_105991 ENSMUSG00000098830 Mir7024 Gm27559|mmu-mir-7024 - 5|5 B2 microRNA 7024 ncRNA 12013 Mm.26147 NM_007520 ENSMUSG00000025612 Bach1 6230421P05Rik|AI323795 - 16|16 C3.3 BTB and CNC homology 1, basic leucine zipper transcription factor 1 protein-coding 102633621 Gm31405 - - 1|1 predicted gene, 31405 pseudo 654822 Mm.489806 NM_001039561 ENSMUSG00000073437 D330041H03Rik - - 17|17 A3.3 RIKEN cDNA D330041H03 gene ncRNA 102632136 XR_391144 Gm20482 - - 7 A1|7 5.44 cM predicted gene 20482 ncRNA 101056208 Gm29798 - - 6 A2|6 predicted gene, 29798 pseudo 100526502 NR_037278 ENSMUSG00000093293 Mir3095 mir-3095|mmu-mir-3095 - 4 B3|4 32.2 cM microRNA 3095 ncRNA 108167609 Mm.489383 XR_001778806 Gm37323 - - 1|1 A1 predicted gene, 37323 ncRNA 98731 AW743052 - - - expressed sequence AW743052 unknown 67006 Mm.269993 NM_025902 ENSMUSG00000028165 Cisd2 1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2 - 3|3 G3 CDGSH iron sulfur domain 2 protein-coding 73661 Mm.321990 2210419D22Rik - - 6|6 RIKEN cDNA 2210419D22 gene protein-coding 102465211 NR_105820 ENSMUSG00000098785 Mir6395 Gm27561|mmu-mir-6395 - 8|8 A4 microRNA 6395 ncRNA 100206 Mm.11285 NM_133883 ENSMUSG00000042558 Adprhl2 AI836109|Arh3 - 4|4 D2.2 ADP-ribosylhydrolase like 2 protein-coding 105798 AI256671 - - - expressed sequence AI256671 unknown 100039190 Gm2089 - - 12|12 B3 ribosomal protein S10 pseudogene pseudo 108167745 XR_001779534 Gm46171 - - 1 H3|1 predicted gene, 46171 ncRNA 16324 Mm.3092 NM_008381 ENSMUSG00000037035 Inhbb - - 1 E2.3|1 52.29 cM inhibin beta-B protein-coding 75108 4930513N20Rik - - 7|7 RIKEN cDNA 4930513N20 gene protein-coding 100862209 Gm21562 - - Y|Y predicted gene, 21562 protein-coding 108832 Mm.103494 NM_001160363 ENSMUSG00000044364 Tmem74b 5430405G05Rik - 2|2 G3 transmembrane protein 74B protein-coding 73361 1700061D13Rik - - 5|5 RIKEN cDNA 1700061D13 gene protein-coding 105245732 XR_874534 Gm41135 - - 14 B|14 predicted gene, 41135 ncRNA 98013 C78549 - - - expressed sequence C78549 protein-coding 102638970 Gm35403 - - 18|18 predicted gene, 35403 ncRNA 112088 Alcw3 - - 11 25.18 cM alcohol withdrawal 3 unknown 791310 Gm10158 - - - predicted gene 10158 unknown 100188919 Mm.473810 NM_001309430 Gm45915 Israa - 14 A3|14 predicted gene, 45915 protein-coding 100034824 Cfld1 - - 2 95.64 cM cystic fibrosis lung disease 1 unknown 15213 Mm.29581 NM_010423 ENSMUSG00000040289 Hey1 AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1 - 3 A1|3 2.15 cM hairy/enhancer-of-split related with YRPW motif 1 protein-coding 111643 Ms13 MMS13 - - minisatellites detected by probe MMS13 other 102635107 Gm32527 - - Y|Y predicted gene, 32527 protein-coding 102465652 NR_106043 ENSMUSG00000098671 Mir7075 Gm27821|mmu-mir-7075 - 8|8 D3 microRNA 7075 ncRNA 102637505 XR_001784567 Gm34296 - - 4 D2.3|4 predicted gene, 34296 ncRNA 102638563 XR_385591 Gm35097 - - 17 B3|17 predicted gene, 35097 ncRNA 100041695 Gm3474 - - 13 D2.3|13 predicted gene 3474 protein-coding 58229 Mm.333229 NM_021418 ENSMUSG00000068263 Efcc1 Ccdc48 - 6|6 D1 EF hand and coiled-coil domain containing 1 protein-coding 114354 Skl6 - - 13 42.19 cM skeletal size (tail length) 6 unknown 100041309 Gm20869 - - Y|Y predicted gene, 20869 protein-coding 108168256 XR_001781738 Gm46530 - - 15 E3|15 predicted gene, 46530 ncRNA 18023 Mm.6743 NM_008686 ENSMUSG00000038615 Nfe2l1 AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11 - 11 D|11 60.12 cM nuclear factor, erythroid derived 2,-like 1 protein-coding 170828 Mm.190616 NM_133251 ENSMUSG00000031131 Vgll1 Tondu - X|X A6 vestigial like family member 1 protein-coding 78817 4930588G05Rik - - 10|10 RIKEN cDNA 4930588G05 gene protein-coding 108511961 Vav2r3 - - 2 A3 Vav2R3 erythroid cis-regulatory module biological-region 105246747 XR_878662 Gm41989 - - 3 A1|3 predicted gene, 41989 ncRNA 108571 Iap3ra18 - - - intracisternal A-type particle, U3 region, SINE repeat a-18 other 100039911 Mm.252735 NR_155513 ENSMUSG00000115245 Gm2491 4930478E11Rik - 15 D1|15 predicted gene 2491 ncRNA 105244446 XR_867300 Gm40053 - - 3 C|3 predicted gene, 40053 ncRNA 100504107 Gm20067 - - X|X 19.67 cM predicted gene, 20067 pseudo 108168352 LOC108168352 - - 17 A3.3 39S ribosomal protein L20, mitochondrial pseudogene pseudo 100416664 Gm17541 - - 12|12 A1.1 ribosomal protein L18A pseudogene pseudo 102636299 XR_880878 LOC102636299 - - 5 A3 small ubiquitin-related modifier 2 pseudogene pseudo 100036397 Vmmt14 - - - vertebral morphology and mechanical traits 14 unknown 27706 D1Dau19 - - - DNA segment, Chr 1, DA Underhill 19 unknown 100125395 Cyp2c72-ps - - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 72, pseudogene pseudo 60924 D9Mit52 - - 9 73.06 cM DNA segment, Chr 9, Massachusetts Institute of Technology 52 unknown 240047 Mm.235343 NM_001033339 ENSMUSG00000023903 Mmp25 F730048C11Rik|Leukolysin|MMP20|MT6-MMP - 17|17 A3.3 matrix metallopeptidase 25 protein-coding 102634183 XR_376394 Gm31828 - - 4 C5|4 predicted gene, 31828 ncRNA 102639926 XR_386275 Gm36124 - - 18 E1|18 predicted gene, 36124 ncRNA 112137 Bgeq11 - - 12 62.22 cM body growth early QTL 11 unknown 751526 NR_030458 ENSMUSG00000076270 Mir719 Mirn719|mmu-mir-719 - 14 D1|14 microRNA 719 ncRNA 14793 Mm.285723 NM_013538 ENSMUSG00000023505 Cdca3 2410005A12Rik|C8|Grcc8|Tome-1 - 6 F2|6 59.17 cM cell division cycle associated 3 protein-coding 52588 Mm.28876 NM_145928 ENSMUSG00000037824 Tspan14 AA958793|D14Ertd226e|Tm4sf14|tspan-14 - 14 B|14 22.36 cM tetraspanin 14 protein-coding 77383 Mm.227745 NR_102277 ENSMUSG00000110027 C030029H02Rik - - 7|7 F3 RIKEN cDNA C030029H02 gene ncRNA 109280105 LOC109280105 Mm1316 - - VISTA enhancer mm1316 biological-region 22253 Mm.24430 NM_009472 ENSMUSG00000059921 Unc5c B130051O18Rik|Unc5h3|rcm - 3 H1|3 65.57 cM unc-5 netrin receptor C protein-coding 635209 XR_874553 Gm7152 EG635209 - 14|14 B predicted gene 7152 ncRNA 21636 Mm.211738 Trgv2 Tcrg-V2|Vgamma2 - 13 A2|13 T cell receptor gamma variable 2 other 210045 Mm.95244 NM_172481 ENSMUSG00000034087 Nlrp4b AU022726|E330024M09|Nalp-gamma|Nalp4b - 7|7 A1 NLR family, pyrin domain containing 4B protein-coding 105244804 XM_017321265 Gm40349 - - 5 G2|5 predicted gene, 40349 protein-coding 52452 D16Ggc2e - - - DNA segment, Chr 16, G. Consalez 2, expressed unknown 110713 Idd11 - - - insulin dependent diabetes susceptibility 11 protein-coding 102638528 XR_381586 Gm35071 - - 12 C1|12 predicted gene, 35071 ncRNA 72844 Mm.390816 NM_001081367 ENSMUSG00000033287 Kctd17 2900008M13Rik|AA414907|AW742389|N28155 - 15|15 E1 potassium channel tetramerisation domain containing 17 protein-coding 114686 Im2 LCH4 - 4 52.81 cM immunoregulatory 2 unknown 11850 Rhoay-ps2 Arhay-ps2|RhoAy2 - Y|Y A1 ras homolog A translocated to the Y, pseudogene 2 pseudo 50914 Mm.39300 NM_016968 ENSMUSG00000046160 Olig1 AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21 - 16|16 C3.3 oligodendrocyte transcription factor 1 protein-coding 102466638 NR_105801 ENSMUSG00000099011 Mir6380 Gm27356|mmu-mir-6380 - 3|3 G3 microRNA 6380 ncRNA 665364 Rps12-ps20 EG665364|Gm7601 - X|X E3 ribosomal protein S12, pseudogene 20 pseudo 15116 Mm.255701 NM_008215 ENSMUSG00000003665 Has1 HAS - 17 A3.2|17 10.53 cM hyaluronan synthase 1 protein-coding 102631555 LOC102631555 - - 7 A1 zinc finger protein 419-like pseudo 102634619 XR_001785009 Gm32158 - - 5 G2|5 predicted gene, 32158 ncRNA 108168464 XR_001782782 LOC108168464 - - X A7.3 eukaryotic translation initiation factor 1 pseudogene pseudo 100035601 W6q13 - - - weight 6 weeks QTL 13 unknown 636741 Mm.480188 NM_001177527 ENSMUSG00000091764 Zfp964 4732490P12|EG636741|Gm7187 - 8|8 B3.3 zinc finger protein 964 protein-coding 622124 Mm.389434 NR_040555 ENSMUSG00000104401 Gm20750 - - 3|3 C predicted gene, 20750 ncRNA 100416158 Gm17946 - - 1|1 E2.2 exosome component 1 pseudogene pseudo 102634788 XM_006500535 Gm32289 - - 2 D|2 predicted gene, 32289 protein-coding 100041498 Gm3372 - - 5|5 C2 pogo transposable element with KRAB domain pseudogene pseudo 100124473 NR_030560 ENSMUSG00000094894 Mir465b-1 Mir465-1|Mirn465b-1 - X A7.1|X microRNA 465b-1 ncRNA 100502960 Gm19474 - - 19|19 4.34 cM predicted gene, 19474 ncRNA 100035605 W6q9 - - - weight 6 weeks QTL 9 unknown 613258 Mm.271990 NR_015523 A730017L22Rik - - 2 F1|2 RIKEN cDNA A730017L22 gene ncRNA 61448 D6Mit127 - - 6 35.02 cM DNA segment, Chr 6, Massachusetts Institute of Technology 127 unknown 102636618 XR_382284 ENSMUSG00000113276 Gm33630 - - 13 A4|13 predicted gene, 33630 ncRNA 108203 Ppi-ps5 - - - peptidylprolyl isomerase, pseudogene 5 pseudo 102632011 XR_386391 Gm30192 - - 18 E3|18 predicted gene, 30192 ncRNA 211586 Mm.17977 NM_178667 ENSMUSG00000032411 Tfdp2 1110029I05Rik|A330080J22Rik|DP-3|DP3 - 9|9 E3.3 transcription factor Dp 2 protein-coding 258919 Mm.377749 NM_146917 ENSMUSG00000075127 Olfr1179 MOR225-2 - 2|2 D olfactory receptor 1179 protein-coding 276920 Mm.123046 NM_177779 ENSMUSG00000045915 Ccdc42 A530001H01Rik - 11|11 B3 coiled-coil domain containing 42 protein-coding 387515 Mm.377922 NM_001001453 ENSMUSG00000051917 Tas2r144 Tas2r40|Tas2r44|mt2r33 - 6|6 B2.1 taste receptor, type 2, member 144 protein-coding 242891 Mm.291521 NM_198621 ENSMUSG00000038044 Cct8l1 Gm443 - 5|5 B1 chaperonin containing TCP1, subunit 8 (theta)-like 1 protein-coding 100417043 Gm18381 - - 3|3 H1 synaptic nuclear envelope 1 pseudogene pseudo 27758 D6Abb1e - - 6 35.11 cM DNA segment, Chr 6, Abbott 1 expressed unknown 105243930 Gm39645 - - 1|1 predicted gene, 39645 ncRNA 29873 Mm.38496 NM_013884 ENSMUSG00000032482 Cspg5 Caleb|Ngc - 9|9 F2 chondroitin sulfate proteoglycan 5 protein-coding 72634 Mm.331198 NM_028307 ENSMUSG00000041912 Tdrkh 2700091C21Rik|Tdrd2 - 3|3 F2.1 tudor and KH domain containing protein protein-coding 259045 Mm.389971 NM_147043 ENSMUSG00000073916 Olfr669 MOR34-6 - 7|7 E3 olfactory receptor 669 protein-coding 100416820 Gm18278 - - 18|18 predicted gene, 18278 pseudo 100048644 Mm.227925 NM_001164813 ENSMUSG00000098387 Pet117 Gm20571 - 2|2 G1 PET117 homolog protein-coding 627466 Gm6759 EG627466 - 17|17 A3.2 high mobility group box 2 pseudogene pseudo 102640483 XR_879456 Gm36532 - - 19 A|19 predicted gene, 36532 ncRNA 105203 Mm.221609 NM_134063 ENSMUSG00000033799 Fam208b AI645998|Pap20|mKIAA2006 - 13|13 A1 family with sequence similarity 208, member B protein-coding 62856 D12Mit189 - - 12 22.79 cM DNA segment, Chr 12, Massachusetts Institute of Technology 189 unknown 639281 Mm.419997 Gm10382 EG639281 - 5|5 G1.1 predicted gene 10382 protein-coding 16758 l7Rn4 l(7)-4Rn - - lethal, Chr 7, Rinchik 4 unknown 105247170 Gm12970 - - 4|4 63.69 cM predicted gene 12970 ncRNA 402759 Mm.403888 A330087D11Rik - - 7|7 RIKEN cDNA A330087D11 gene protein-coding 75879 Mm.410800 NR_152118 4930589L23Rik - - 3|3 E3 RIKEN cDNA 4930589L23 gene ncRNA 66637 Mm.379120 NM_025677 ENSMUSG00000014980 Tsen15 5730449L18Rik|AL023077|Sen15 - 1|1 G2 tRNA splicing endonuclease subunit 15 protein-coding 61888 D1Mit298 - - 1 6.16 cM DNA segment, Chr 1, Massachusetts Institute of Technology 298 unknown 100504642 Mm.490246 XR_882340 Gm21996 - - Y E|Y predicted gene 21996 protein-coding 56057 Mm.431317 NM_019493 ENSMUSG00000032056 Btg4 C86116|PC3B - 9|9 A5.3 B cell translocation gene 4 protein-coding 111573 Xmv41 Xmv-41 - - xenotropic murine leukemia virus 41 other 22701 Mm.87210 NM_011759 ENSMUSG00000047003 Zfp41 CTfin92|Zfp-41 - 15|15 D3 zinc finger protein 41 protein-coding 666938 Mm.101339 NM_001164806 ENSMUSG00000092060 Bend4 D330027G24Rik|EG666938 - 5 C3.1|5 BEN domain containing 4 protein-coding 105245555 Mm.400260 XR_873661 Gm40999 - - 13 C1|13 predicted gene, 40999 ncRNA 100049607 Fmtq8 - - - femur mechanical trait QTL 8 unknown 100503508 Gm13736 - - 2 D|2 49.86 cM signal recognition particle 9 pseudogene pseudo 52074 Mm.410438 D6Ertd47e - - 6 53.11 cM DNA segment, Chr 6, ERATO Doi 47, expressed unknown 57277 Mm.27630 NM_020519 ENSMUSG00000022596 Slurp1 1110021N19Rik|AI415082|ARS|ArsB|Slurp-1 - 15|15 D3 secreted Ly6/Plaur domain containing 1 protein-coding 78115 Mm.160049 XR_383864 4930445E18Rik - - 15|15 B1 RIKEN cDNA 4930445E18 gene unknown 100124699 Trbv30 Gm16648|Tcrb-V18 - 6 19.39 cM|6 B1 T cell receptor beta, variable 30 other 242546 Mm.302562 NM_001100182 ENSMUSG00000081225 Cyp2j12 BB197342|Cyp2j12-ps - 4|4 C5 cytochrome P450, family 2, subfamily j, polypeptide 12 protein-coding 108167903 Gm12619 - - 11 B2|11 37.81 cM predicted gene 12619 pseudo 404489 Olfr1227-ps1 - - 2|2 E1 olfactory receptor 1227, pseudogene 1 pseudo 105977 AU022852 - - - expressed sequence AU022852 protein-coding 628503 Gm6887 EG628503 - 7|7 B3 predicted gene 6887 pseudo 66674 Mm.282706 NM_025697 ENSMUSG00000021930 Spryd7 6330409N04Rik|Clld6 - 14|14 D1 SPRY domain containing 7 protein-coding 170737 Mm.271578 NM_133206 ENSMUSG00000033545 Znrf1 B830022L21Rik|Rnf42|Zrfp1|nin283 - 8|8 E1 zinc and ring finger 1 protein-coding 213948 Mm.332252 NM_001002897 ENSMUSG00000038295 Atg9b Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE - 5 A3|5 11.49 cM autophagy related 9B protein-coding 100038735 Mm.397871 XR_875155 ENSMUSG00000072618 Gm10384 - - 15 B3.1|15 predicted gene 10384 ncRNA 214133 Mm.347816 NM_145989 ENSMUSG00000040943 Tet2 Ayu17-449|E130014J05Rik|mKIAA1546 - 3|3 G3 tet methylcytosine dioxygenase 2 protein-coding 101056116 Gm21760 - - Y|Y predicted gene, 21760 protein-coding 100039055 Mm.380174 NM_001220497 Gm16404 EG625711 - X|X A5 predicted gene 16404 protein-coding 546907 Gm5995 EG546907 - 6 C2|6 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene pseudo 27974 D7Wsu69e - - 7 54.22 cM DNA segment, Chr 7, Wayne State University 69, expressed unknown 100039999 Gm2544 - - 13 A1|13 predicted gene 2544 pseudo 23968 Mm.333653 NM_011860 ENSMUSG00000015721 Nlrp5 Mater|Nalp5|Op1|PAN11 - 7 A3|7 10.22 cM NLR family, pyrin domain containing 5 protein-coding 30046 Mm.38193 NM_013889 ENSMUSG00000039967 Zfp292 5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530 - 4 A5|4 16.86 cM zinc finger protein 292 protein-coding 106602 AI463580 - - - expressed sequence AI463580 unknown 21445 tclTuw27 tcl-Tuw27 - - t-complex lethal Tuw27 unknown 100418283 Gm17514 - - 13|13 B3 upstream binding transcription factor, RNA polymerase I pseudogene pseudo 100036055 Hrq1 - - 2 62.49 cM heart rate QTL 1 unknown 67748 Mm.444640 4930589P08Rik - - 4|4 RIKEN cDNA 4930589P08 gene unknown 111952 Iap3rb17 - - - intracisternal A-type particle, U3 region, SINE repeat b-17 other 109279878 LOC109279878 Mm94 - - VISTA enhancer mm94 biological-region 97662 C86090 - - - expressed sequence C86090 protein-coding 69047 Mm.46251 NM_026922 ENSMUSG00000034112 Atp2c2 1810010G06Rik|Spca2|mKIAA0703 - 8|8 E1 ATPase, Ca++ transporting, type 2C, member 2 protein-coding 100040287 Gm16418 EG640373 - 1|1 H2.3 ubiquinol-cytochrome c reductase subunit pseudogene pseudo 282624 D15Kus5 - - - DNA segment, Chr 15, Kusakabe 5 unknown 387167 NR_029559 ENSMUSG00000065470 Mir149 Mirn149|mir-149|mmu-mir-149 - 1|1 D microRNA 149 ncRNA 231999 Mm.35416 NM_001001335 ENSMUSG00000005225 Plekha8 6330400G01|AA517676|BC052360|Fapp-2|Fapp2 - 6|6 B3 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 protein-coding 83797 Mm.273756 NM_031842 ENSMUSG00000023018 Smarcd1 AA407987|Baf60a|D15Kz1 - 15 F1|15 56.13 cM SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 protein-coding 107849 Mm.392548 NM_181852 ENSMUSG00000055360 Prl2c5 Ghd3|MRP-4|Mrpplf4|PLF-4 - 13|13 A1 prolactin family 2, subfamily c, member 5 protein-coding 102633985 XR_376121 Gm31678 - - 3 G3|3 predicted gene, 31678 ncRNA 60700 D1Mit65 - - 1 2.08 cM DNA segment, Chr 1, Massachusetts Institute of Technology 65 unknown 75691 Mm.86866 NM_001024136 ENSMUSG00000066191 Anks6 2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo - 4|4 B1 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding 24010 Mm.30234 NM_011879 ENSMUSG00000024474 Ik MuRED - 18|18 B2 IK cytokine protein-coding 436189 Gm5752 EG436189 - X|X A1.1 high mobility group box 3 pseudogene pseudo 52179 D9Ertd256e - - 9 59.85 cM DNA segment, Chr 9, ERATO Doi 256, expressed unknown 100043259 Gm13793 - - 2|2 E1 predicted gene 13793 protein-coding 62437 D18Mit222 - - 18 8.08 cM DNA segment, Chr 18, Massachusetts Institute of Technology 222 unknown 18329 Mm.222836 NM_146878 ENSMUSG00000043314 Olfr30 MOR2811|MTPCR07 - 11|11 B1.3 olfactory receptor 30 protein-coding 102643076 XM_011246761 ENSMUSG00000114245 Gm38655 - - 17 A3.3|17 predicted gene, 38655 protein-coding 102635114 XR_377781 Gm32534 - - 6 C3|6 predicted gene, 32534 ncRNA 62215 D16Mit50 - - 16 45.41 cM DNA segment, Chr 16, Massachusetts Institute of Technology 50 unknown 319699 Mm.136367 9530051E23Rik - - 3|3 RIKEN cDNA 9530051E23 gene protein-coding 14077 Mm.388886 NM_010174 ENSMUSG00000028773 Fabp3 Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi - 4 D2.2|4 63.43 cM fatty acid binding protein 3, muscle and heart protein-coding 12315 Mm.288630 NM_007590 ENSMUSG00000019370 Calm3 CaMA|Cam3|Camc|R75142 - 7 A2|7 9.15 cM calmodulin 3 protein-coding 102637542 Mm.371582 NR_153852 Gm13872 - - 2|2 E2 predicted gene 13872 ncRNA 620693 Gm6173 EG620693 - 18|18 E4 tubulin, beta 4 pseudogene pseudo 20181 Mm.24624 NM_011305 ENSMUSG00000015846 Rxra 9530071D11Rik|Nr2b1|RXRalpha1 - 2 A3|2 19.38 cM retinoid X receptor alpha protein-coding 111394 Emv22 Emv-22 - - endogenous ecotropic MuLV 22 other 108168000 Gm46350 - - 12 C1|12 mitochondrial import receptor subunit TOM20 homolog pseudogene pseudo 100034761 Mnif2 - - 18 28.33 cM macronutrient intake, fat 2 unknown 13465 Dp(2)11H Dp11H - - duplication, Chr 2, Harwell 11 other 13238 Mm.426634 NM_010039 Defa4 Crp4|Defa28|Defcr4 - 8|8 A2 defensin, alpha, 4 protein-coding 73368 Mm.345095 NM_028518 ENSMUSG00000016356 Col20a1 1700051I12Rik - 2|2 H4 collagen, type XX, alpha 1 protein-coding 20115 Mm.279839 NM_011300 ENSMUSG00000061477 Rps7 Mtu|Rps7A|S7 - 12|12 A2 ribosomal protein S7 protein-coding 105246041 XR_875664 Gm41401 - - 15 F1|15 predicted gene, 41401 ncRNA 20564 Mm.478604 NM_011412 ENSMUSG00000056427 Slit3 Slil2|Slit1|b2b2362.1Clo - 11|11 A4 slit guidance ligand 3 protein-coding 217194 Mm.183320 NM_172565 ENSMUSG00000048732 Klhl11 BC011167 - 11|11 D kelch-like 11 protein-coding 14697 Mm.17604 NM_010313 ENSMUSG00000032192 Gnb5 GBS|Gbeta5|flr - 9 D|9 42.3 cM guanine nucleotide binding protein (G protein), beta 5 protein-coding 100316841 NR_035487 ENSMUSG00000089268 Mir1961 mmu-mir-1961 - 5 E2|5 47.29 cM microRNA 1961 ncRNA 102639255 Mm.383676 XR_380583 Gm35608 - - 10 C1|10 predicted gene, 35608 ncRNA 110950 Atp5g1-rs5 - - - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C (subunit 9), isoform 1, related sequence 5 protein-coding 245676 XR_001782771 ENSMUSG00000045694 Gm4997 EG245676 - X|X F3 predicted gene 4997 unknown 102640604 XR_877713 Gm36629 - - 19 A|19 predicted gene, 36629 ncRNA 100416011 Gm15666 - - 10|10 D1 keratin 19 pseudogene pseudo 100039110 Gm12922 - - 4|4 D2.2 ribosomal protein S2 pseudogene pseudo 108167828 LOC108167828 - - 1 C1.1 heterogeneous nuclear ribonucleoprotein A1-like pseudo 108167423 XR_001778115 LOC108167423 - - 7 B3 uncharacterized LOC108167423 ncRNA 105244727 Gm40285 - - 5|5 predicted gene, 40285 ncRNA 100126437 Psds2 - - - psoriasis-like skin disease severity 2 unknown 628571 Igkv4-63 EG628571|Gm6896|ac4 - 6|6 C1 immunoglobulin kappa variable 4-63 other 116826 Amp1 Amp-1 - - amplitude of circadian rhythm 1 unknown 102636166 XR_375917 Gm33309 - - 3 F2.2|3 predicted gene, 33309 ncRNA 105243370 Gm39315 - - 9|9 predicted gene, 39315 ncRNA 80889 Mm.272998 NM_030705 ENSMUSG00000070462 Tlnrd1 AW061151|Mesdc1 - 7|7 D3 talin rod domain containing 1 protein-coding 230726 Mm.37334 NM_183163 ENSMUSG00000043333 Rhbdl2 9130416B15|RRP2 - 4|4 D2.2 rhomboid like 2 protein-coding 105245917 XR_875152 Gm41297 - - 15 B3.1|15 predicted gene, 41297 ncRNA 18628 Mm.121361 NM_011067 ENSMUSG00000028957 Per3 2810049O06Rik|mPer3 - 4|4 E2 period circadian clock 3 protein-coding 102635723 XR_377070 Gm32986 - - 5 G1.1|5 predicted gene, 32986 ncRNA 112175 Skts4 - - - skin tumor susceptibility 4 unknown 100035824 Mhstq2 - - - male hybrid sterility QTL 2 unknown 252828 Obox4 - - - oocyte specific homeobox 4 protein-coding 105246672 XR_878424 Gm41924 - - 1 E2.1|1 predicted gene, 41924 ncRNA 100035639 Bdw1 - - 13 6.99 cM body weight 1 unknown 68460 Mm.22167 NM_001013013 ENSMUSG00000033044 Dhrs7c 1110001P11Rik|AI120487|SRP-35 - 11|11 B3 dehydrogenase/reductase (SDR family) member 7C protein-coding 108167811 XR_001779770 Gm46225 - - 10 B3|10 predicted gene, 46225 ncRNA 62568 D12Mit136 - - 12 13.0 cM DNA segment, Chr 12, Massachusetts Institute of Technology 136 unknown 100417053 Gm14804 - - X|X C1 predicted gene 14804 pseudo 252967 Mm.436668 NM_145852 ENSMUSG00000022236 Ropn1l ASP|AV047578|Akapasp - 15|15 B2 ropporin 1-like protein-coding 70094 2310008B10Rik - - 2|2 RIKEN cDNA 2310008B10 gene protein-coding 100038561 Mm.421436 B230104I21Rik - - - RIKEN cDNA B230104I21 gene unknown 245007 Mm.485954 NM_175537 ENSMUSG00000040433 Zbtb38 A930014K01Rik|CIBZ - 9|9 E3.3 zinc finger and BTB domain containing 38 protein-coding 234677 Mm.120297 NM_146213 ENSMUSG00000060560 Ces4a Ces8 - 8|8 D3 carboxylesterase 4A protein-coding 108262 Gapdh-ps12 Gapd-ps12|domes22 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 12 pseudo 111736 Igk-V31 - - - immunoglobulin kappa chain variable 31 (V31) other 97969 C79601 - - - expressed sequence C79601 unknown 52228 D1Ertd230e - - 1 5.7 cM DNA segment, Chr 1, ERATO Doi 230, expressed unknown 62590 D13Mit106 - - 13 47.75 cM DNA segment, Chr 13, Massachusetts Institute of Technology 106 unknown 217335 Mm.35241 NM_172571 ENSMUSG00000020776 Fbf1 1110033G01Rik|5930413D20|mKIAA1863 - 11|11 E2 Fas (TNFRSF6) binding factor 1 protein-coding 102633634 Mm.406455 NR_152728 Gm26876 - - 10 D3|10 predicted gene, 26876 ncRNA 102637534 XM_017313106 Cpop - - 1 C2 carboxypeptidase O pseudogene pseudo 18125 Mm.44249 NM_008712 ENSMUSG00000029361 Nos1 2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS - 5 F|5 57.29 cM nitric oxide synthase 1, neuronal protein-coding 76366 Mm.486234 NM_029581 ENSMUSG00000016510 Mtif3 2810012L14Rik|AI414549 - 5|5 G3 mitochondrial translational initiation factor 3 protein-coding 108169041 XR_001784850 Gm46910 - - 5 B3|5 predicted gene, 46910 ncRNA 100113454 Secia1 - - - small effect CIA locus 1 unknown 108167452 XR_001778241 Gm45996 - - 7 E3|7 predicted gene, 45996 ncRNA 100039875 Gm10313 - - 8|8 B1.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 52410 Mm.394844 D8Ertd769e - - - DNA segment, Chr 8, ERATO Doi 769, expressed unknown 15080 Mm.471842 H3f3a-ps2 H3mm15|MH-921 - 16|16 C3.3 H3 histone, family 3A, pseudogene 2 pseudo 102639444 Gm24027 - - 7|7 predicted gene, 24027 ncRNA 320390 Mm.137640 XR_873062 ENSMUSG00000113120 E330035G20Rik - - 12|12 F1 RIKEN cDNA E330035G20 gene ncRNA 111068 Odc-rs4 BRS-4|Odc-4 - - ornithine decarboxylase, related sequence 4 pseudo 100035618 Aaj2 - - - anxiety in A/J 2 unknown 102635233 XR_385010 Gm32624 - - 16 C3.3|16 predicted gene, 32624 ncRNA 232879 Mm.279272 NM_001024699 ENSMUSG00000049600 Zbtb45 BB161562|Gm157|Zfp499 - 7|7 A1 zinc finger and BTB domain containing 45 protein-coding 102465900 NR_106192 ENSMUSG00000098623 Mir8112 Gm27739|mmu-mir-8112 - 6|6 C1 microRNA 8112 ncRNA 217364 Mm.473963 NM_172573 ENSMUSG00000033857 Engase C130099A03|D230014K01Rik - 11|11 E2 endo-beta-N-acetylglucosaminidase protein-coding 66286 Mm.27800 NM_025468 ENSMUSG00000024516 Sec11c 1810029G24Rik|Sec11l3 - 18|18 E1 SEC11 homolog C, signal peptidase complex subunit protein-coding 27838 D2Dcr13 - - - DNA segment, Chr 2, Derry C. Roopenian 13 unknown 102637682 Mm.451914 NR_153824 Gm26682 Gm38715 - 18 A1|18 predicted gene, 26682 ncRNA 100286839 Gm17805 - - 14|14 A1 ribosomal protein L19 pseudogene pseudo 111299 Hmgn1-rs4 Hmg14-rs4 - - high mobility group nucleosomal binding domain 1, related sequence 4 pseudo 666586 NM_001105157 Gm11808 Uba52 - 4|4 A1 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene pseudo 111418 Mtv23 Mtv-23 - - mammary tumor virus locus 23 other 66606 Mm.428639 NM_025657 ENSMUSG00000027286 Lrrc57 2810002D13Rik|AA407405 - 2|2 E5 leucine rich repeat containing 57 protein-coding 100041775 Gm3507 - - 17 A2|17 integrin beta 3 binding protein (beta3-endonexin) pseudogene pseudo 668486 Gm14388 - - 7|7 F2 acid phosphatase 1 pseudogene pseudo 111446 Emv62 Emv-62 - - endogenous ecotropic MuLV 62 other 100417937 Gm18909 - - 14|14 B eukaryotic translation initiation factor 5 pseudogene pseudo 100040162 Gm2638 - - 15|15 A2 transcription factor EC pseudogene pseudo 102466155 NR_105799 ENSMUSG00000098862 Mir6378 Gm27706|mmu-mir-6378 - 3|3 A3 microRNA 6378 ncRNA 381812 Mm.296093 NM_001033464 ENSMUSG00000061414 Cracr2a Efcab4b|Gm1073|Gm462 - 6|6 F3 calcium release activated channel regulator 2A protein-coding 239337 Mm.224825 NM_175501 ENSMUSG00000047497 Adamts12 ADAMTS-12|AI605170 - 15|15 A1 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12 protein-coding 72194 Mm.218350 NM_028149 ENSMUSG00000020883 Fbxl20 2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147 - 11|11 D F-box and leucine-rich repeat protein 20 protein-coding 70192 Mm.390006 NM_027343 ENSMUSG00000079168 Cd209g 2310066I10Rik|AI481039|SIGNR7 - 8|8 A1.1 CD209g antigen protein-coding 69810 Mm.333374 NM_027218 ENSMUSG00000030147 Clec4b1 1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2 - 6|6 F2 C-type lectin domain family 4, member b1 protein-coding 100862142 Gm21513 - - Y A1|Y predicted gene, 21513 pseudo 101612 Mm.274847 NM_153419 ENSMUSG00000053801 Grwd1 A301|AI504353|Grwd|Wdr28 - 7|7 B3 glutamate-rich WD repeat containing 1 protein-coding 27849 D0Nds9 - - - DNA segment, Nuffield Department of Surgery 9 unknown 668645 Gm9282 EG668645 - 12|12 A1.3 predicted gene 9282 pseudo 107732 Mm.208946 NM_026154 ENSMUSG00000001445 Mrpl10 0610040E02Rik|C78440|MRP-L8|Rpml8 - 11|11 D mitochondrial ribosomal protein L10 protein-coding 102633525 Gm31332 - - 12 A1.1|12 predicted gene, 31332 pseudo 105244414 XR_879926 Gm40025 - - 11 B3|11 predicted gene, 40025 ncRNA 97697 C77714 - - - expressed sequence C77714 unknown 218440 Mm.213623 NM_175455 ENSMUSG00000045034 Ankrd34b 6430502M16Rik|DP58 - 13|13 C3 ankyrin repeat domain 34B protein-coding 171247 Mm.377203 NM_134213 ENSMUSG00000069292 Vmn1r199 V1rh4 - 13|13 A3.1 vomeronasal 1 receptor 199 protein-coding 100036014 Psrs3 - - - psoriasis susceptibility 3 unknown 102636245 Gm29190 - - Y|Y predicted gene 29190 ncRNA 102465701 NR_106076 ENSMUSG00000106578 Mir7217 mmu-mir-7217 - 17|17 A3.3 microRNA 7217 ncRNA 102465645 NR_106032 ENSMUSG00000098532 Mir7065 Gm27871|mmu-mir-7065 - 8|8 A1.1 microRNA 7065 ncRNA 107541 Rhv2 Rhv-2 - - resistance to hepatitis virus 2 protein-coding 74460 Mm.390801 NR_029414 ENSMUSG00000100127 Gsdmcl-ps 4933426G20Rik - 15|15 D1 gasdermin C-like, pseudogene pseudo 78301 0610033I19Rik - - - RIKEN cDNA 0610033I19 gene protein-coding 84095 Mm.117037 NM_145501 ENSMUSG00000025178 Pi4k2a Pi4k2 - 19 C3|19 35.74 cM phosphatidylinositol 4-kinase type 2 alpha protein-coding 665197 Gm12936 - - 4|4 D2.2 predicted gene 12936 pseudo 100499528 NR_037311 ENSMUSG00000092752 Mir3473a Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a - X F4|X 75.07 cM microRNA 3473a ncRNA 62352 D1Mit360 - - 1 84.93 cM DNA segment, Chr 1, Massachusetts Institute of Technology 360 unknown 111467 Gln3-5 - - - GLN retrotransposon family 3-5 other 110585 Tcra-V10.6 - - - T cell receptor alpha, variable 10.6 other 320744 A130049L09Rik - - 13|13 RIKEN cDNA A130049L09 gene protein-coding 668523 Mark4-ps EG668523|Gm9221 - 17 C|17 MAP/microtubule affinity regulating kinase 4, pseudogene pseudo 666401 Gm8084 EG666401 - 1 E2.1|1 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3D pseudogene pseudo 105244026 XR_865779 Gm38293 - - 1 H4|1 predicted gene, 38293 ncRNA 105242544 XR_868645 Gm38727 - - 5 G2|5 predicted gene, 38727 ncRNA 223723 Mm.46778 NM_183017 ENSMUSG00000016757 Ttll12 BC055368|D430005B17 - 15|15 E1 tubulin tyrosine ligase-like family, member 12 protein-coding 638170 Gm7230 100041967|Gm3595 - 7|7 A1 zinc finger protein 772 pseudogene pseudo 105243334 XR_879365 Gm39286 - - 8 E2|8 predicted gene, 39286 ncRNA 100316716 NR_035500 ENSMUSG00000088148 Mir1983 mmu-mir-1983 - 13 A3.1|13 8.05 cM microRNA 1983 ncRNA 66209 Mm.51988 NM_001013577 ENSMUSG00000038544 Inip 1110054O05Rik|2610312O17Rik|AA399876|Ssbip1 - 4|4 B3 INTS3 and NABP interacting protein protein-coding 61124 D5Mit386 - - 5 13.23 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 386 unknown 234911 Mm.334940 NM_001030289 ENSMUSG00000070323 Mmp27 Gm180 - 9|9 A1 matrix metallopeptidase 27 protein-coding 100043609 Mm.185068 NR_030683 ENSMUSG00000074912 Gm14207 Dll4 - 2|2 E5 predicted gene 14207 ncRNA 105246531 Mm.441464 XR_001782693 LOC105246531 - - 19 A uncharacterized LOC105246531 ncRNA 242585 Mm.281800 NM_177732 ENSMUSG00000028521 Slc35d1 AI834976|C330011J09|UGTREL7|mKIAA0260 - 4|4 C6 solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 protein-coding 237716 Mm.338361 NM_175490 ENSMUSG00000043999 Gpr75 - - 11|11 A4 G protein-coupled receptor 75 protein-coding 632412 Gm7086 EG632412|Gm84 - 15|15 D1 alpha-1-B glycoprotein pseudogene pseudo 231069 Gm4865 EG231069 - 5|5 B1 microfibrillar-associated protein 1 pseudogene pseudo 100033459 Mm.303377 NM_001162938 ENSMUSG00000066677 Ifi208 9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik - 1|1 H3 interferon activated gene 208 protein-coding 434008 Mm.53915 NM_001004182 ENSMUSG00000057716 Tmem178b A930009E05Rik|EG434008|Gm5567 - 6 B1|6 transmembrane protein 178B protein-coding 102637245 XR_375168 Gm34111 - - 2 H1|2 predicted gene, 34111 ncRNA 100040567 Mm.490816 NR_046068 ENSMUSG00000085876 Gm12409 - - 4|4 B1 predicted gene 12409 ncRNA 19881 Mm.426094 NM_009073 ENSMUSG00000071648 Rom1 M101156|Rgsc1156|Rom-1|Rosp1|Tspan23 - 19 A|19 6.03 cM rod outer segment membrane protein 1 protein-coding 17113 Mm.249225 NM_010749 ENSMUSG00000007458 M6pr CD-MPR|Mpr46 - 6 F1|6 57.52 cM mannose-6-phosphate receptor, cation dependent protein-coding 73282 XR_877561 ENSMUSG00000097302 1700034B16Rik - - 18|18 E3 RIKEN cDNA 1700034B16 gene ncRNA 100040421 Mm.83967 NR_037991 ENSMUSG00000107008 Gm2762 1700025I17Rik - 13 B1|13 predicted gene 2762 ncRNA 383474 Gm5249 EG383474 - 19|19 B predicted gene 5249 pseudo 71891 Mm.439850 NM_027986 ENSMUSG00000021982 Cdadc1 2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15 - 14|14 C3 cytidine and dCMP deaminase domain containing 1 protein-coding 14866 Mm.282351 NM_010360 ENSMUSG00000004032 Gstm5 - - 3|3 F2.3 glutathione S-transferase, mu 5 protein-coding 258236 Mm.291412 NM_001159775 ENSMUSG00000070382 Olfr391-ps MOR135-24|Olfr391|Olfr391-ps1 - 11|11 B4 olfactory receptor 391, pseudogene protein-coding 102634046 Gm21182 - - 8|8 predicted gene, 21182 pseudo 102633833 XR_375002 Gm38455 - - 2 F2|2 predicted gene, 38455 ncRNA 60817 D4Mit58 - - 4 45.66 cM DNA segment, Chr 4, Massachusetts Institute of Technology 58 unknown 105246309 Mm.244159 XR_876934 Gm41611 - - 17 E1.3|17 predicted gene, 41611 ncRNA 102637102 XR_388694 Gm33998 - - 11 B1.3|11 predicted gene, 33998 ncRNA 105245636 Gm41064 - - 13|13 predicted gene, 41064 ncRNA 233045 Mm.226037 XR_881922 Gm26604 C130030J05 - 7|7 B1 predicted gene, 26604 ncRNA 109553 Whl - - - wheels unknown 102633563 Mm.406600 XR_375769 Gm31359 - - 3 F1|3 predicted gene, 31359 ncRNA 667867 Gm8850 EG667867 - 1 G3|1 predicted gene 8850 pseudo 66412 Mm.251199 NM_025549 ENSMUSG00000042659 Arrdc4 2410003C09Rik|AV216361 - 7|7 C arrestin domain containing 4 protein-coding 394431 Ugt1a@ - - 1|1D UDP glycosyltransferase 1 family, polypeptide A cluster other 108168237 XR_001781626 Gm46513 - - 15 A1|15 predicted gene, 46513 ncRNA 545550 Gm5852 EG545550 - 3|3 F2.1 TD and POZ domain containing pseudogene pseudo 13452 Dp(1)6H Dp6H - - duplication, Chr 1, Harwell 6 other 100039566 Gm2314 - - 5|5 G2 sperm motility kinase 3A pseudogene pseudo 62698 D17Mit129 - - 17 56.83 cM DNA segment, Chr 17, Massachusetts Institute of Technology 129 unknown 21412 Mm.16497 NM_011545 ENSMUSG00000045680 Tcf21 Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin - 10 A3|10 10.33 cM transcription factor 21 protein-coding 242748 Mm.33873 NM_001083342 ENSMUSG00000041544 Disp3 G630052C06Rik|Ptchd2|RNDEu-2 - 4|4 E2 dispatched RND transporter family member 3 protein-coding 100416747 Gm18225 - - 9|9 A3 zinc finger protein 810 pseudogene pseudo 257664 Mm.377884 NM_207008 ENSMUSG00000096000 Olfr773 GA_x6K02T2PULF-10872859-10871923|MOR114-15|Olfr773-ps1 - 10|10 D3 olfactory receptor 773 protein-coding 102634944 XR_378023 Gm32404 - - 6 F2|6 predicted gene, 32404 ncRNA 100035232 Spnw3 - - - spleen weight 3 unknown 735285 NR_030481 ENSMUSG00000076123 Mir700 Mirn700|mir-700|mmu-mir-700 - 4 D3|4 microRNA 700 ncRNA 105244976 Gm40494 - - 12|12 predicted gene, 40494 ncRNA 80898 Mm.83526 NM_030711 ENSMUSG00000021583 Erap1 A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP - 13|13 C1 endoplasmic reticulum aminopeptidase 1 protein-coding 102637645 XR_380641 Gm34405 - - 10 C1|10 predicted gene, 34405 ncRNA 20474 Mm.249575 NM_011382 ENSMUSG00000034460 Six4 AI047561|AREC3|TrexBF - 12|12 C3 sine oculis-related homeobox 4 protein-coding 235907 Mm.440123 NM_145622 ENSMUSG00000071281 Zfp65 KRAB5|Zfp71-rs1|pz114 - 13 B3|13 34.7 cM zinc finger protein 65 protein-coding 492994 Lvic2 - - 3 43.71 cM liver iron content 2 unknown 102633929 XR_383758 Gm31633 - - 14 E4|14 predicted gene, 31633 ncRNA 27497 3P18T - - - DNA segment, 3P18T unknown 102633891 XR_384261 Gm31608 - - 15 E1|15 predicted gene, 31608 ncRNA 22018 Mm.4991 NM_009417 ENSMUSG00000020673 Tpo - - 12 A2|12 13.0 cM thyroid peroxidase protein-coding 30953 Mm.331064 NM_013928 ENSMUSG00000027777 Schip1 Nf2ip|Schip-1 - 3|3 E1 schwannomin interacting protein 1 protein-coding 271842 Mm.33617 NM_173450 ENSMUSG00000027324 Rpusd2 4921503C21Rik|9630001E10|BB231107 - 2|2 E5 RNA pseudouridylate synthase domain containing 2 protein-coding 53166 23.MHAa89f11.seq - - - DNA segment, 23.MHAa89f11 unknown 228829 Mm.427078 NM_172674 ENSMUSG00000038116 Phf20 6820402O20Rik - 2|2 H1 PHD finger protein 20 protein-coding 100417246 Gm12948 - - 4|4 D2.2 crumbs homolog 1 pseudogene pseudo 110174 Fim1 Fim-1 - 13|13 Friend MuLV integration site 1 protein-coding 102633773 Mm.272086 NR_136927 ENSMUSG00000107653 Gm31520 - - 6 C1|6 sterol-C5-desaturase pseudogene pseudo 102465575 NR_105918 ENSMUSG00000098625 Mir6953 Gm27738|mmu-mir-6953 - 15|15 D3 microRNA 6953 ncRNA 78021 Mm.50375 XR_384300 4930513L16Rik - - 15|15 E2 RIKEN cDNA 4930513L16 gene unknown 100504679 Gm11951 - - 11 A1|11 2.55 cM interferon-induced transmembrane protein 3-like pseudo 637260 Mm.359471 LOC637260 - - 6|6 Ig kappa chain V-IV region B17 precursor-like other 101455 AA517479 - - - expressed sequence AA517479 unknown 102631742 Gm30006 - - 14|14 predicted gene, 30006 ncRNA 108169204 XR_001785461 Gm46991 - - 6 D3|6 predicted gene, 46991 ncRNA 100035031 Arigm1 - - - anti-RBC IgM antibodies 1 unknown 72342 Gm9727 - - 5 E5|5 LSM12 homolog pseudogene pseudo 404545 Mm.297411 NM_207031 ENSMUSG00000034107 Ano7 Ngep|Ngep-L|Pcanap5|Tmem16g - 1|1 D anoctamin 7 protein-coding 105244963 XR_872885 Gm40481 - - 12 D2|12 predicted gene, 40481 ncRNA 100036285 Tailaq2 - - - tail length adjusted QTL 2 unknown 13356 Mm.254515 NM_010048 ENSMUSG00000003166 Dgcr2 9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163 - 16 A3|16 11.05 cM DiGeorge syndrome critical region gene 2 protein-coding 105896 Mm.39759 AI835086 - - - expressed sequence AI835086 unknown 434039 Igkv6-32 19-32|Gm10882|Igk-v19-32|Igkv6-b - 6|6 C1 immunoglobulin kappa variable 6-32 other 19016 Mm.3020 NM_011146 ENSMUSG00000000440 Pparg Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2 - 6 E3|6 53.41 cM peroxisome proliferator activated receptor gamma protein-coding 109108 Mm.234455 NM_178651 ENSMUSG00000029221 Slc30a9 2310024J23Rik|AL024256|GAC63|HUEL|znT-9 - 5|5 C3.1 solute carrier family 30 (zinc transporter), member 9 protein-coding 667580 Gm8711 EG667580 - 10|10 D1 THO complex 4 pseudogene pseudo 67335 Mm.416862 1700060O08Rik - - 12|12 RIKEN cDNA 1700060O08 gene unknown 100034810 Cia19 mCia13 - - collagen induced arthritis QTL 19 unknown 14577 ge - - - greige unknown 51974 D8Ggc1e - - - DNA segment, Chr 8, G. Consalez 1, expressed unknown 105245748 XR_874595 Gm41147 - - 14 C1|14 predicted gene, 41147 ncRNA 108167617 XR_001778860 LOC108167617 - - 1 B uncharacterized LOC108167617 ncRNA 328839 Mm.254123 NM_177825 Gm5094 A130033B22|EG328839 - 17 C|17 predicted gene 5094 unknown 100503573 Gm19775 - - X A1.1|X 4.08 cM ubiquitin-conjugating enzyme E2 E3-like pseudo 269397 Mm.63068 NM_178750 ENSMUSG00000039086 Ss18l1 A230053O16Rik|CREST - 2|2 H4 SS18, nBAF chromatin remodeling complex subunit like 1 protein-coding 74692 Mm.395790 4930442P07Rik - - 17|17 RIKEN cDNA 4930442P07 gene protein-coding 105246014 Gm41379 - - 15|15 predicted gene, 41379 ncRNA 101251 AU022166 - - - expressed sequence AU022166 protein-coding 112430 Lrncs1 - - - learning-conditioned stimulus 1 unknown 108168751 LOC108168751 - - 2 C1.1 60S ribosomal protein L36 pseudogene pseudo 170799 Mm.209844 NM_133244 ENSMUSG00000037846 Rtkn2 B130039D23Rik|Mbf|Plekhk1 - 10|10 B5.1 rhotekin 2 protein-coding 100101428 Cia35 - - - collagen induced arthritis QTL 35 unknown 93742 Mm.299254 NM_033620 ENSMUSG00000025812 Pard3 AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip - 8 E2|8 74.66 cM par-3 family cell polarity regulator protein-coding 257907 Olfr1558-ps1 MOR263-11 - 17|17 B1 olfactory receptor 1558, pseudogene 1 pseudo 97202 C76614 - - - expressed sequence C76614 unknown 100034896 Moo3 Mobe3 - - modifier of obesity 3 unknown 105244603 XR_879982 Gm40193 Gm45573 - 11 B3|11 predicted gene, 40193 ncRNA 68299 Mm.46397 NM_026664 ENSMUSG00000017288 Vps53 2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1 - 11|11 B5 VPS53 GARP complex subunit protein-coding 102633260 XR_377178 Gm31127 - - 5 G2|5 predicted gene, 31127 ncRNA 102639940 Gm36135 - - Y|Y tRNA methyltransferase 112 homolog pseudo 102641455 Mm.102313 LOC102641455 - - - uncharacterized LOC102641455 ncRNA 623995 Gm6464 EG623995 - X|X F2 predicted gene 6464 pseudo 69957 Mm.182412 NM_027276 ENSMUSG00000038416 Cdc16 2700071J12Rik|2810431D22Rik|APC6 - 8|8 A1.1 CDC16 cell division cycle 16 protein-coding 75454 Mm.458079 NM_029293 ENSMUSG00000036504 Phpt1 1700008C22Rik|PHP|Php14 - 2|2 A3 phosphohistidine phosphatase 1 protein-coding 77634 Mm.271985 NM_029949 ENSMUSG00000028483 Snapc3 1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik - 4|4 C3 small nuclear RNA activating complex, polypeptide 3 protein-coding 102640708 Gm26980 - - 16|16 predicted gene, 26980 pseudo 435366 Mm.442716 NM_001013825 Platr25 EG435366|Gm5665 - 13 B3|13 pluripotency associated transcript 25 unknown 66968 Mm.254985 NM_025874 ENSMUSG00000011305 Plin5 2310076L09Rik|AI415325|AW109675|Lsdp5|MLDP|PAT-1 - 17|17 D perilipin 5 protein-coding 100416678 Gm18187 - - 5|5 A1 zinc finger protein 384 pseudogene pseudo 216781 Mm.339507 NM_001039047 ENSMUSG00000037124 Trim58 Gm16|Gm1783 - 11|11 B1.3 tripartite motif-containing 58 protein-coding 12401 Mm.290079 NM_007618 ENSMUSG00000060807 Serpina6 Cbg - 12 E|12 52.98 cM serine (or cysteine) peptidase inhibitor, clade A, member 6 protein-coding 100040608 Mm.322643 NM_001115087 ENSMUSG00000092118 Fancf A730016A17 - 7|7 B4 Fanconi anemia, complementation group F protein-coding 382030 Mm.216574 NM_029074 ENSMUSG00000036810 Cnep1r1 5033428A16Rik|NEP1-R1|Tmem188 - 8|8 C3 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 102633749 XR_386194 Gm31501 - - 18 B3|18 predicted gene, 31501 ncRNA 61247 D2Mit108 - - 2 68.2 cM DNA segment, Chr 2, Massachusetts Institute of Technology 108 unknown 61042 DXMit161 - - X 4.04 cM DNA segment, Chr X, Massachusetts Institute of Technology 161 unknown 106050032 Mrcs1 - - - mammal reptile conserved sequence 1 biological-region 26426 Mm.36718 NM_011956 ENSMUSG00000039183 Nubp2 D17Wsu11e - 17 A3.3|17 12.53 cM nucleotide binding protein 2 protein-coding 100035935 Qbis1 - - 4 70.02 cM QTL for body weight independent of sex 1 unknown 102633158 XR_380498 Gm31056 - - 10 B5.1|10 predicted gene, 31056 ncRNA 99223 AU024573 - - - expressed sequence AU024573 unknown 100042827 Mm.380685 XR_872301 Gm12052 - - 11|11 A3.2 predicted gene 12052 ncRNA 381066 Mm.441097 NM_001002008 ENSMUSG00000067931 Zfp948 - - 17|17 A3.2 zinc finger protein 948 protein-coding 667187 Gm8501 EG667187 - X|X A7.3 predicted gene 8501 pseudo 320825 Mm.101115 NM_177271 ENSMUSG00000060487 Samd5 E130306M17Rik - 10|10 A1 sterile alpha motif domain containing 5 protein-coding 18611 Mm.544 NM_011063 ENSMUSG00000013698 Pea15a Mat1|PEA-15|Pea15|Pkcs15 - 1 H3|1 79.54 cM phosphoprotein enriched in astrocytes 15A protein-coding 74370 Mm.209933 NM_028898 ENSMUSG00000025583 Rptor 4932417H02Rik|Rap|Raptor|mKIAA1303 - 11|11 E2 regulatory associated protein of MTOR, complex 1 protein-coding 105245180 XR_871736 Gm40668 - - 10 B4|10 predicted gene, 40668 ncRNA 102632142 NM_001361137 Gm18905 - - 7|7 B3 predicted gene, 18905 protein-coding 359983 DXMgc120 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 120 unknown 102635835 Gm33076 - - 14|14 predicted gene, 33076 ncRNA 100417988 Gm12376 - - 3|3 B protein tyrosine phosphatase, mitochondrial 1 pseudogene pseudo 62598 D8Mit1003 D13Mit127 - 8 35.31 cM DNA segment, Chr 8, Massachusetts Institute of Technology 1003 unknown 102633785 XR_384770 Gm31527 - - 16 B1|16 predicted gene, 31527 ncRNA 69364 Mm.158267 NM_027056 ENSMUSG00000028589 1700012P22Rik - - 4|4 E1 RIKEN cDNA 1700012P22 gene protein-coding 64011 Mm.335065 NM_022029 ENSMUSG00000053310 Nrgn 0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3 - 9 A4|9 20.78 cM neurogranin protein-coding 60756 D2Mit51 - - - DNA segment, Chr 2, Massachusetts Institute of Technology 51 unknown 27732 D17Tu49b - - - DNA segment, Chr 17, Tubigen 49, B unknown 666199 Gm7974 EG666199 - X A5|X predicted gene 7974 pseudo 61441 D6Mit114 - - 6 77.01 cM DNA segment, Chr 6, Massachusetts Institute of Technology 114 unknown 226720 Mm.11282 NM_001290692 ENSMUSG00000104158 Becn2 Beclin-2|Gm104 - 1|1 H4 beclin 2 protein-coding 76601 Mm.396217 NR_040573 ENSMUSG00000100857 1700041M19Rik - - 16|16 C3.1 RIKEN cDNA 1700041M19 gene ncRNA 100628628 NR_039576 ENSMUSG00000092787 Mir5116 mmu-mir-5116|mu-mir-5116 - X A6|X 30.06 cM microRNA 5116 ncRNA 105244127 XR_866156 Gm39795 - - 2 B|2 predicted gene, 39795 ncRNA 102639965 XR_374969 Gm36154 - - 2 F1|2 predicted gene, 36154 ncRNA 108168728 LOC108168728 - - 2 B heat shock cognate 71 kDa protein-like pseudo 735273 NR_030473 ENSMUSG00000076118 Mir669c Mirn669c|Mirn669c-1 - 2 A1|2 microRNA 669c ncRNA 100126093 Mtbcq8 Bwnd2wk6|Bwnd4wk5|Bwnd5wk5|Bwnd6wk4 - - multiple trait body composition QTL 8 unknown 100417979 Gm18931 - - 11|11 B2 POU domain, class 5, transcription factor 1 pseudogene pseudo 100502982 Mm.313570 NR_045645 BC037704 - - 19|19 C3 cDNA sequence BC037704 ncRNA 105244277 Gm39917 - - 2|2 predicted gene, 39917 ncRNA 100861666 Gm21935 - - 13 B3|13 predicted gene, 21935 pseudo 27267 Mm.125659 NM_013742 ENSMUSG00000010755 Cars CA3 - 7 F5|7 88.25 cM cysteinyl-tRNA synthetase protein-coding 105242891 Mm.96247 XR_001778069 LOC105242891 - - 7 A3 uncharacterized LOC105242891 ncRNA 105180389 Mm.447502 B930083L10Rik - - - Riken cDNA B930083L10 gene protein-coding 105247201 XR_881557 Gm42340 - - 4 E1|4 predicted gene, 42340 ncRNA 14107 Mm.27365 NM_001081286 ENSMUSG00000070047 Fat1 2310038E12Rik|AU023433|Fath|mFat1 - 8 B1.1|8 24.81 cM FAT atypical cadherin 1 protein-coding 100036274 Elpfm - - 5 55.72 cM eye lens protein fluorescence emission unknown 77942 A930006A01Rik - - 1|1 RIKEN cDNA A930006A01 gene protein-coding 105244936 Gm40458 - - 7|7 predicted gene, 40458 protein-coding 330796 Mm.258257 NR_131056 Gm38415 E230016D10 - 8|8 B3.3 predicted gene, 38415 ncRNA 105245172 XR_873113 Gm40662 - - 13 A1|13 predicted gene, 40662 ncRNA 18781 Mm.5189 NM_008868 ENSMUSG00000028750 Pla2g2c - - 4 D3|4 70.54 cM phospholipase A2, group IIC protein-coding 238756 Gm4936 EG238756 - 13|13 C3 ribosomal protein S2 pseudogene pseudo 61156 D11Mit8 - - 11 47.28 cM DNA segment, Chr 11, Massachusetts Institute of Technology 8 unknown 404399 Olfr1191-ps1 GA_x5J8B7TR5JA-571-5|GA_x6K02T2Q125-50121628-50122030|MOR230-9|Olfr526-ps1 - 2|2 D olfactory receptor 1191, pseudogene 1 pseudo 209294 Mm.300592 NM_001033239 ENSMUSG00000034362 Csta1 Csta - 16|16 B3 cystatin A1 protein-coding 61701 D5Mit338 - - 5 53.23 cM DNA segment, Chr 5, Massachusetts Institute of Technology 338 unknown 27867 D11Moh38e - - - DNA segment, Chr 11, KL Mohlke 38 expressed unknown 83701 Mm.387734 NM_031405 ENSMUSG00000037364 Srrt 2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2 - 5|5 G2 serrate RNA effector molecule homolog (Arabidopsis) protein-coding 100036199 Tshp13 QTL-TSH13.1 - - tooth shape 13 unknown 100035777 Lscc3 - - 18 29.67 cM lung squamous cell carcinoma 3 unknown 20333 Mm.2551 NM_011342 ENSMUSG00000027879 Sec22b 4930564D15Rik|AA517334|AI480645|C81333|ERS-24|Sec22l1 - 3|3 F2.2 SEC22 homolog B, vesicle trafficking protein protein-coding 74076 Mm.50114 NR_044986 ENSMUSG00000097494 4933406C10Rik - - 12|12 A3 RIKEN cDNA 4933406C10 gene ncRNA 102639773 XR_375424 Gm36004 - - 2 H4|2 predicted gene, 36004 ncRNA 66384 Mm.29452 NM_025527 ENSMUSG00000014504 Srp19 2310020D23Rik - 18|18 B1 signal recognition particle 19 protein-coding 108150745 LOC108150745 - - 8 C3 Hhip1 peak 1 Gli-inducible enhancer biological-region 320688 Mm.406709 XR_870075 D930030F02Rik - - 7|7 F5 RIKEN cDNA D930030F02 gene ncRNA 102635024 XR_385779 Gm32464 - - 17 E3|17 predicted gene, 32464 ncRNA 110120392 LOC110120392 - - - VISTA enhancer mm151 biological-region 102640398 XR_386936 Gm36466 - - X A6|X predicted gene, 36466 ncRNA 628008 Fthl17-ps2 EG628008|Fthl17L6|Gm6826 - X|X A1.1 ferritin, heavy polypeptide-like 17, pseudogene 2 pseudo 105243727 Gm4995 EG245651 - X|X F2 coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial pseudogene pseudo 14943 Mm.457976 NM_010374 ENSMUSG00000015441 Gzmf CCP4|Ctla-7|Ctla7|MCSP-3 - 14 C3|14 28.19 cM granzyme F protein-coding 22344 Mm.46628 NM_016686 ENSMUSG00000018377 Vezf1 AI848691|AW046909|db1 - 11|11 C vascular endothelial zinc finger 1 protein-coding 100418306 Gm19131 - - 6|6 C1 predicted gene, 19131 pseudo 100039275 Rp31-ps19 Gm2131 - 9|9 F2 ribosomal protein L31, pseudogene 19 pseudo 93849 D6Jor2 - - - DNA segment, Chr 6, Barbara Jordan 2 unknown 61486 D7Mit158 - - 7 29.82 cM DNA segment, Chr 7, Massachusetts Institute of Technology 158 unknown 110838 Usf1-rs3 Usf1-rs1 - - upstream transcription factor 1, related sequence 3 protein-coding 105245786 XR_874723 Gm41178 - - 14 D1|14 predicted gene, 41178 ncRNA 68597 Mm.390979 NM_026782 ENSMUSG00000024018 Ccdc167 1110021J02Rik - 17 A3.3|17 coiled-coil domain containing 167 protein-coding 100418125 Gm19018 - - 14|14 A1 NSA2 ribosome biogenesis homolog pseudogene pseudo 108167553 LOC108167553 - - 8 D3 40S ribosomal protein S2 pseudogene pseudo 227298 Mm.273062 NM_170755 ENSMUSG00000049339 Retreg2 Fam134a - 1|1 C4 reticulophagy regulator family member 2 protein-coding 108670 Mm.68134 NM_029495 ENSMUSG00000022014 Epsti1 2310046K10Rik|5033415K03Rik|BRESI1 - 14|14 D3 epithelial stromal interaction 1 (breast) protein-coding 328133 Mm.238279 NM_026244 ENSMUSG00000048833 Slc39a9 2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151 - 12|12 C3 solute carrier family 39 (zinc transporter), member 9 protein-coding 61642 D8Mit229 - - 8 25.03 cM DNA segment, Chr 8, Massachusetts Institute of Technology 229 unknown 61798 D2Mit409 - - 2 78.72 cM DNA segment, Chr 2, Massachusetts Institute of Technology 409 unknown 27223 Mm.215389 NM_013735 ENSMUSG00000043909 Trp53bp1 53BP1|Tp53bp1|m53BP1|p53BP1 - 2|2 E5 transformation related protein 53 binding protein 1 protein-coding 74966 Mm.379238 NM_030089 4930471G03Rik 1700007N01Rik - 18|18 B2 RIKEN cDNA 4930471G03 gene ncRNA 74716 Mm.159315 NM_029066 ENSMUSG00000022455 Wbp2nl 4930521I23Rik|PAWP - 15|15 E1 WBP2 N-terminal like protein-coding 101056096 Gm21806 - - Y|Y predicted gene, 21806 protein-coding 96875 Mm.174256 NM_021400 ENSMUSG00000006014 Prg4 CACP|DOL54|JCAP|MSF|SZP|lubricin - 1|1 G1 proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) protein-coding 380840 Mm.390576 NM_201358 ENSMUSG00000046573 Lyrm4 BC034664|Gm903 - 13|13 A3.3 LYR motif containing 4 protein-coding 56583 137h23T7 - - - DNA segment, 137h23T7 unknown 102636398 LOC102636398 - - - uncharacterized LOC102636398 ncRNA 61734 D4Mit289 - - 4 38.4 cM DNA segment, Chr 4, Massachusetts Institute of Technology 289 unknown 433315 Mm.342696 NM_001013800 ENSMUSG00000044689 Gm13749 - - 1 C2|1 predicted gene 13749 ncRNA 387232 Mir122b Mirn122b - - microRNA 122b ncRNA 66643 Mm.268018 NM_025681 ENSMUSG00000047786 Lix1 5730466L18Rik - 17|17 A3.1-A3.2 limb and CNS expressed 1 protein-coding 21355 Mm.14814 NM_011530 ENSMUSG00000024339 Tap2 ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas - 17 B1|17 17.98 cM transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) protein-coding 27411 Mm.44158 NM_030683 ENSMUSG00000024552 Slc14a2 UT-A1|UT-A3 - 18|18 E3 solute carrier family 14 (urea transporter), member 2 protein-coding 107560 Man1b-rs - - - mannosidase 1, beta, related sequence protein-coding 61770 D3Mit278 - - 3 32.59 cM DNA segment, Chr 3, Massachusetts Institute of Technology 278 unknown 100041925 XR_141401 ENSMUSG00000083621 Gm14586 - - X|X A5 predicted gene 14586 pseudo 73481 Mm.333010 NM_028550 ENSMUSG00000029883 1700074P13Rik AV047902|Tryx5 - 6|6 B1 RIKEN cDNA 1700074P13 gene protein-coding 102638869 XR_382023 Gm35330 - - 13 A1|13 predicted gene, 35330 ncRNA 17119 Mm.279580 NM_010751 ENSMUSG00000001156 Mxd1 AW122478|Mad|Mad1 - 6 D1|6 37.75 cM MAX dimerization protein 1 protein-coding 320117 Mm.209644 C730049O14Rik - - 18|18 RIKEN cDNA C730049O14 gene protein-coding 23892 Mm.166318 NM_011824 ENSMUSG00000074934 Grem1 Cktsf1b1|Drm|Grem|ld - 2 E4|2 57.43 cM gremlin 1, DAN family BMP antagonist protein-coding 100038459 Mm.491673 Gm10831 - - - predicted gene 10831 ncRNA 619665 Mm.204671 NM_001135093 ENSMUSG00000073209 Klf14 5330411L03Rik|AL022736|BTEB5 - 6|6 A3.3 Kruppel-like factor 14 protein-coding 635895 Mm.388844 NM_001122977 ENSMUSG00000067941 Gm7168 EG635895 - 17|17 A2 predicted gene 7168 protein-coding 100502635 Mm.459128 XR_880185 Gm11525 - - 11 D|11 60.16 cM predicted gene 11525 ncRNA 111403 Emv38 Emv-38 - - endogenous ecotropic MuLV 38 other 72306 Mm.381553 NM_001081382 ENSMUSG00000071477 Zfp777 2500002G23Rik - 6|6 B2.3 zinc finger protein 777 protein-coding 791413 Mm.437816 Gm12592 - - - predicted gene 12592 unknown 102638952 Mm.298706 Gm35387 - - 14|14 predicted gene, 35387 ncRNA 104124 Meta - - - meth A tumor antigen protein-coding 627302 Mm.445953 NM_001037929 Gm14092 - - 2 G1|2 predicted gene 14092 protein-coding 625850 Mm.422879 NR_024558 Gm11166 - - 17|17 A1 predicted gene 11166 ncRNA 492900 Fglu2 - - 1 81.08 cM fasting glucose 2 unknown 493139 Lxw5 - - 1 39.16 cM lupus BXSB x NZW 5 unknown 414109 Mm.401801 NM_001001500 9830163H01Rik - - 9|9 A5.3 RIKEN cDNA 9830163H01 gene unknown 11843 Mm.297768 NM_007479 ENSMUSG00000021877 Arf4 AA407803 - 14 A3|14 16.09 cM ADP-ribosylation factor 4 protein-coding 50907 Mm.272414 NM_016703 ENSMUSG00000045302 Preb C85705 - 5|5 B1 prolactin regulatory element binding protein-coding 105246218 XR_876621 Gm41531 - - 17 A2|17 predicted gene, 41531 ncRNA 100502608 Gm15200 - - 10|10 22.89 cM predicted gene 15200 ncRNA 57813 Mm.183110 NM_021028 ENSMUSG00000035824 Tk2 AU024611|mt-TK - 8|8 D3 thymidine kinase 2, mitochondrial protein-coding 110270 Ftl1-rs1 - - - ferritin light chain 1, related sequence 1 protein-coding 61325 D3Mit182 - - 3 21.73 cM DNA segment, Chr 3, Massachusetts Institute of Technology 182 unknown 381232 Mm.248624 NR_028427 ENSMUSG00000097636 Mirt1 4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758 - 19|19 D2 myocardial infarction associated transcript 1 ncRNA 676923 Gm16470 EG668299 - 19|19 C3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 20192 Mm.436657 NM_177652 ENSMUSG00000057378 Ryr3 AI851294|C230090H21|RYR-3 - 2|2 E3-E4 ryanodine receptor 3 protein-coding 52061 D3Ertd34e - - 3 39.2 cM DNA segment, Chr 3, ERATO Doi 34, expressed unknown 240817 Mm.439405 NM_178243 ENSMUSG00000045968 Teddm2 5830403L16Rik|AJ554213|Me9|e92 - 1|1 G3 transmembrane epididymal family member 2 protein-coding 102635245 LOC102635245 - - X E3 lamina-associated polypeptide 2, isoforms beta/gamma pseudogene pseudo 216850 Mm.261201 NM_001017426 ENSMUSG00000018476 Kdm6b 1700064E03Rik|BC038313|Jmjd3|mKIAA0346 - 11|11 B3 KDM1 lysine (K)-specific demethylase 6B protein-coding 102635587 Gm32880 - - 13|13 predicted gene, 32880 ncRNA 102635437 XR_381896 Gm32776 - - 12 F1|12 predicted gene, 32776 ncRNA 111498 Xmmv74 Xmmv-74 - - xenotropic-MCF leukemia virus 74 other 434764 Mm.379498 NM_001085356 ENSMUSG00000095741 Rhox2f EG434764|Rhox2.6|Rhox2e - X|X A3.3 reproductive homeobox 2F protein-coding 671504 Gm9536 - - 16|16 B1 predicted gene 9536 pseudo 100034871 Nhdlq5 - - 6 1.81 cM non-HDL QTL 5 unknown 257996 Mm.390162 NM_001011798 ENSMUSG00000095893 Olfr884 MOR162-11P|MOR162-13|MOR162-9P|Olfr1550-ps1 - 9|9 A4 olfactory receptor 884 protein-coding 15280 hl - - - hair loss unknown 67487 Mm.260627 NM_026191 ENSMUSG00000018425 Dhx40 2410016C14Rik|ARG147|DDX40|PAD - 11|11 C DEAH (Asp-Glu-Ala-His) box polypeptide 40 protein-coding 78059 XR_869301 4930595L18Rik Gm44197 - 6|6 D3 RIKEN cDNA 4930595L18 gene ncRNA 214552 Mm.260103 NM_172531 ENSMUSG00000043987 Cep164 AI450905|BC027092|D030051D21|mKIAA1052 - 9|9 A5.2 centrosomal protein 164 protein-coding 100040478 Gm2796 - - 6 A1|6 predicted gene 2796 pseudo 102637018 XR_377092 Gm33931 - - 5 G1.3|5 predicted gene, 33931 ncRNA 100049604 Vms2 - - 1 63.84 cM viral myocarditis susceptibility locus 2 unknown 19276 Mm.206054 NM_011215 ENSMUSG00000056553 Ptprn2 4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin - 12 F2|12 62.65 cM protein tyrosine phosphatase, receptor type, N polypeptide 2 protein-coding 100526526 NR_037281 ENSMUSG00000093157 Mir3098 mmu-mir-3098 - 6 F2|6 59.32 cM microRNA 3098 ncRNA 100217439 NR_034047 Snora19 MBI-51 - 19 D3|19 small nucleolar RNA, H/ACA box 19 snoRNA 102639868 XM_006517807 ENSMUSG00000095029 Gm36079 - - 13 D2.3|13 predicted gene, 36079 protein-coding 432543 Gm5430 EG432543 - 17|17 A3.3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100502937 Mm.450972 XR_140846 ENSMUSG00000030930 Gm19463 - - 7 F3|7 76.29 cM predicted gene, 19463 ncRNA 105244528 XR_001783957 Gm40122 - - 3 F2.3|3 predicted gene, 40122 ncRNA 102632666 XR_380606 Gm30682 - - 10 C1|10 predicted gene, 30682 ncRNA 62376 D12Mit168 - - 12 5.58 cM DNA segment, Chr 12, Massachusetts Institute of Technology 168 unknown 625031 Gpr31a EG625031|Gm6544 - 17 A1|17 4.72 cM G protein-coupled receptor 31, D17Leh66a region pseudo 100041722 Mm.425891 NM_001358037 ENSMUSG00000090440 1700049E17Rik2 - - 14 B|14 tandem duplication of RIKEN cDNA 1700049E17 gene, gene 2 protein-coding 102631656 XR_374631 Gm29940 - - 2 C3|2 predicted gene, 29940 ncRNA 100417376 Gm18575 - - 14|14 A1 ubiquitin specific peptidase 7 pseudogene pseudo 14337 NM_008049 Ftl2-ps Ftl|Ftl-2|Ftl2 - 4|4 D2.2 ferritin light polypeptide 2, pseudogene pseudo 269254 Mm.41867 NM_198033 ENSMUSG00000043535 Setx A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625 - 2|2 B senataxin protein-coding 105242923 XR_882045 Gm38997 Gm44747 - 7 B3|7 predicted gene, 38997 ncRNA 71998 Mm.298622 NM_028048 ENSMUSG00000018740 Slc25a35 1810012H11Rik - 11|11 B3 solute carrier family 25, member 35 protein-coding 100040335 XM_011251046 Gm20836 - - Y|Y A1 predicted gene, 20836 protein-coding 215335 Mm.35732 NM_153139 ENSMUSG00000020261 Slc36a1 5830411H19Rik|AI839897|Pat1 - 11|11 B1.3 solute carrier family 36 (proton/amino acid symporter), member 1 protein-coding 78412 Mm.248440 NM_199145 ENSMUSG00000046806 3110062M04Rik AL023049|Cyren|Mri - 6|6 B1 RIKEN cDNA 3110062M04 gene protein-coding 223691 Mm.206404 NM_145139 ENSMUSG00000033047 Eif3l 0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67 - 15 E1|15 37.7 cM eukaryotic translation initiation factor 3, subunit L protein-coding 100043330 Gm4366 - - 7 F1|7 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 723899 NR_029855 ENSMUSG00000065449 Mir365-1 Mirn365-1|mir-365-1 - 16|16 A1 microRNA 365-1 ncRNA 654361 Gm7332 EG654361 - 5 A1|5 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene pseudo 100418350 Gm19155 - - 13|13 A3.3 serine (or cysteine) peptidase inhibitor, clade B, member 9 pseudogene pseudo 666837 Gm8320 EG666837 - X|X F2 lysyl-tRNA synthetase pseudogene pseudo 56856 Mm.114886 NM_020287 ENSMUSG00000045440 Insm2 Mlt1 - 12|12 C1 insulinoma-associated 2 protein-coding 105242582 XR_868743 Gm38754 - - 5 G3|5 predicted gene, 38754 ncRNA 14290 Mm.455334 NM_008040 ENSMUSG00000060701 Fpr-rs3 - - 17|17 A3.2 formyl peptide receptor, related sequence 3 protein-coding 14051 Mm.332128 NM_010167 ENSMUSG00000010461 Eya4 B130023L16Rik - 10 A3|10 10.44 cM EYA transcriptional coactivator and phosphatase 4 protein-coding 102635412 XR_382491 Gm32759 - - 13 B1|13 predicted gene, 32759 ncRNA 75001 NR_108044 4930482G09Rik - - 3|3 H3 RIKEN cDNA 4930482G09 gene ncRNA 13185 Mm.7472 NM_007834 ENSMUSG00000022898 Dscr3 AW538125|Dcra - 16|16 C4 DSCR3 arrestin fold containing protein-coding 108300 Mmv3 Mmv-3 - - MCF endogenous virus 3 other 100035589 Salpa2 - - 6 39.51 cM serum alkaline phosphatase activity 2 unknown 105247198 XR_881548 Gm42337 - - 4 D3|4 predicted gene, 42337 ncRNA 108228204 LOC108228204 Pf1 - - Pax1 enhancer Pf1 biological-region 21191 T(4;9)45H T45H - - reciprocal translocation, Chr 4 and 9, Harwell 45 other 319245 Mm.347703 NM_175679 9430097D07Rik - - 2|2 B RIKEN cDNA 9430097D07 gene unknown 338438 NR_131912 Hymai - - 10 A2|10 hydatidiform mole associated and imprinted transcript ncRNA 110336 Ftl1-rs11 - - - ferritin light chain 1, related sequence 11 protein-coding 102467245 n-TRacg4 n-Tr4 - 13 A3.1|13 nuclear encoded tRNA arginine 4 (anticodon ACG) tRNA 18103 Mm.1260 NM_008705 ENSMUSG00000020857 Nme2 NM23-H2|NM23B|nm23-M2 - 11|11 D NME/NM23 nucleoside diphosphate kinase 2 protein-coding 246167 L1Md-Gf84 GF84 - - L1 repeat, Gf subfamily, member 84 other 102643069 Gm38654 - - 9|9 predicted gene, 38654 ncRNA 15978 Mm.240327 NM_008337 ENSMUSG00000055170 Ifng IFN-g|Ifg - 10 D2|10 66.75 cM interferon gamma protein-coding 102637190 XR_389787 Gm34067 - - 5 B1|5 predicted gene, 34067 ncRNA 258897 Mm.377740 NM_146895 ENSMUSG00000059023 Olfr1201 MOR230-2 - 2|2 E1 olfactory receptor 1201 protein-coding 12854 Mm.6204 NM_007745 ENSMUSG00000028971 Cort CST|PCST - 4 E2|4 78.89 cM cortistatin protein-coding 73256 Mm.261155 1700021G15Rik - - 10|10 RIKEN cDNA 1700021G15 gene ncRNA 105245210 XR_871832 Gm40695 - - 10 C1|10 predicted gene, 40695 ncRNA 102634629 XR_384271 Gm32167 - - 15 E1|15 predicted gene, 32167 ncRNA 70373 Mm.252967 NM_027405 ENSMUSG00000021254 Gpatch2l 1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152 - 12|12 D2 G patch domain containing 2 like protein-coding 171203 Mm.377181 NM_134185 ENSMUSG00000091541 Vmn1r9 V1rc30 - 6|6 B3 vomeronasal 1 receptor 9 protein-coding 100124355 Traj34 Gm16665 - 14|14 C2 T cell receptor alpha joining 34 other 269959 Mm.65306 NM_001190374 ENSMUSG00000070469 Adamtsl3 9230119C12Rik|C130057K09|mKIAA1233 - 7|7 D3 ADAMTS-like 3 protein-coding 61456 D6Mit179 - - 6 2.15 cM DNA segment, Chr 6, Massachusetts Institute of Technology 179 unknown 62471 D19Mit120 - - 19 36.34 cM DNA Segment, Chr 19 Massachusetts Institute of Technology 120 unknown 77629 Mm.154303 NM_172430 ENSMUSG00000026163 Sphkap 4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678 - 1|1 C5 SPHK1 interactor, AKAP domain containing protein-coding 108168100 XR_001780990 Gm46429 - - 13 B3|13 predicted gene, 46429 ncRNA 114052 Lrnx8 - - - learning-contextual 8 unknown 627081 Mm.255790 NM_001111293 ENSMUSG00000072479 Xlr5b - - X A7.3|X X-linked lymphocyte-regulated 5B protein-coding 359963 DXMgc100 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 100 unknown 112357 Alcp3 - - 3 72.41 cM alcohol preference locus 3, male specific unknown 100328567 Gm17822 - - 6 D2|6 44.32 cM suppressor of Ty 4 homolog 1 pseudogene pseudo 102641100 XR_882632 LOC102641100 - - - uncharacterized LOC102641100 ncRNA 98432 Mm.24115 NM_133821 ENSMUSG00000044340 Phlpp1 AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606 - 1|1 E2.1 PH domain and leucine rich repeat protein phosphatase 1 protein-coding 72372 2210411G17Rik - - 18|18 RIKEN cDNA 2210411G17 gene protein-coding 100542 AA589577 - - - expressed sequence AA589577 unknown 666737 Mm.473620 NR_015510 ENSMUSG00000074024 4632427E13Rik AU015482 - 7|7 E1 RIKEN cDNA 4632427E13 gene ncRNA 111771 Iapls1-5 - - - intracisternal A particle, lymphocyte specific 1-5 other 353502 Mm.359030 NM_181821 ENSMUSG00000023904 Hcfc1r1 HPIP - 17|17 A3.3 host cell factor C1 regulator 1 (XPO1-dependent) protein-coding 244178 Mm.334092 NM_198623 ENSMUSG00000051618 Ubqln3 4933400K24Rik - 7|7 E3 ubiquilin 3 protein-coding 102633817 LOC102633817 - - 11 B1.3 40S ribosomal protein S11-like pseudo 100043349 Gm13882 - - 2|2 E2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 436002 Mm.389933 NM_001025386 ENSMUSG00000094822 Olfr243 MOR22-4|Olfr243-ps1|Olfr627|Olfr627-ps1 - 7|7 E3 olfactory receptor 243 protein-coding 74263 Mm.382119 1700037C06Rik - - 4|4 RIKEN cDNA 1700037C06 gene protein-coding 241490 Mm.33310 NM_153405 ENSMUSG00000042369 Rbm45 Drb1|Drbp1|G430095G15Rik - 2|2 C3 RNA binding motif protein 45 protein-coding 105242912 XR_881968 Gm38991 Gm45143 - 7 B2|7 predicted gene, 38991 ncRNA 22372 wal - - - waved alopecia unknown 69261 2810411K19Rik - - 13|13 RIKEN cDNA 2810411K19 gene protein-coding 68166 Mm.208723 NM_176832 ENSMUSG00000024533 Spire1 6030430B19Rik|AI415299|AU022898|AW550622|Spir-1 - 18|18 E1 spire type actin nucleation factor 1 protein-coding 100041185 Gm3188 - - 19|19 A CDC-like kinase 3 pseudogene pseudo 269878 Mm.38527 NM_001160400 ENSMUSG00000045039 Megf8 AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817 - 7|7 A3 multiple EGF-like-domains 8 protein-coding 102642507 LOC102642507 - - - up-regulated during skeletal muscle growth protein 5 protein-coding 100035648 Spnw7 - - - spleen weight 7 unknown 212281 Mm.342918 NM_183146 ENSMUSG00000021510 Zfp729a A530054K11Rik|Rslcan3 - 13|13 B3 zinc finger protein 729a protein-coding 75099 Mm.121691 NM_175215 ENSMUSG00000043831 Lysmd4 4930506D23Rik - 7|7 C LysM, putative peptidoglycan-binding, domain containing 4 protein-coding 14593 Mm.148039 NM_010282 ENSMUSG00000021302 Ggps1 1810026C22Rik|9530089B04Rik|AI843169|C79210 - 13 A1|13 5.29 cM geranylgeranyl diphosphate synthase 1 protein-coding 24099 Mm.28835 NM_033622 ENSMUSG00000031497 Tnfsf13b BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4 - 8 A1.1|8 4.55 cM tumor necrosis factor (ligand) superfamily, member 13b protein-coding 52589 Mm.283370 NM_134094 ENSMUSG00000051359 Ncald AI848120|D030020D09Rik|D15Ertd412e - 15 B3.1|15 14.94 cM neurocalcin delta protein-coding 100035192 Ses10 - - 13 52.9 cM salmonella enteritidis susceptibility 10 unknown 105244385 Gm40004 - - 2|2 predicted gene, 40004 ncRNA 19697 Mm.249966 NM_009045 ENSMUSG00000024927 Rela p65 - 19 A|19 4.34 cM v-rel reticuloendotheliosis viral oncogene homolog A (avian) protein-coding 12424 Mm.2619 NM_031161 ENSMUSG00000032532 Cck - - 9 72.43 cM|9 F4 cholecystokinin protein-coding 97047 C76434 - - - expressed sequence C76434 protein-coding 57330 Mm.268344 NM_031408 ENSMUSG00000029714 Gigyf1 Perq1|mKIAA4110 - 5|5 G2 GRB10 interacting GYF protein 1 protein-coding 71678 Mm.392270 NM_027861 ENSMUSG00000046836 Brox 0610010K06Rik - 1|1 H5 BRO1 domain and CAAX motif containing protein-coding 319589 9930031P18Rik - - 13|13 RIKEN cDNA 9930031P18 gene protein-coding 103797 Mm.398751 AI596487 - - - expressed sequence AI596487 unknown 60735 D1Mit43 - - 1 65.33 cM DNA segment, Chr 1, Massachusetts Institute of Technology 43 unknown 111817 Iapls1-70 - - - intracisternal A particle, lymphocyte specific 1-70 other 108409 Xmmv13 Env-13|Xmmv-13 - - xenotropic-MCF leukemia virus 13 other 102636696 XR_384708 Gm33696 - - 16 A1|16 predicted gene, 33696 ncRNA 211401 Mm.215481 NM_144800 ENSMUSG00000022353 Mtss1 2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429 - 15|15 D1 metastasis suppressor 1 protein-coding 102633702 Mm.136866 XR_378696 ENSMUSG00000108932 Gm31463 - - 8 A1.1|8 predicted gene, 31463 ncRNA 102632076 XR_383514 Gm30245 - - 14 D1|14 predicted gene, 30245 ncRNA 72413 Mm.64790 NM_028231 ENSMUSG00000037610 Kcnmb2 2700049B16Rik|3110031N04Rik - 3|3 A3 potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding 226856 Mm.277958 NM_172266 ENSMUSG00000026623 Lpgat1 AI649174|AW112037|BC013667 - 1|1 H6 lysophosphatidylglycerol acyltransferase 1 protein-coding 665033 Mm.39826 NM_001167923 ENSMUSG00000091345 Col6a5 Col29a1|EG665033|Gm7455 - 9 F1|9 collagen, type VI, alpha 5 protein-coding 100040980 Gm3076 - - 3 H3|3 predicted gene 3076 pseudo 97836 Mm.410567 NR_046002 ENSMUSG00000092515 C87198 - - 12 C1|12 expressed sequence C87198 ncRNA 60768 D2Mit81 - - 2 16.73 cM DNA segment, Chr 2, Massachusetts Institute of Technology 81 unknown 110884 Nova2-rs2 - - - neuro-oncological ventral antigen 2, related sequence 2 protein-coding 242409 Mm.171489 NM_001085508 ENSMUSG00000078716 Tmem8b 4930500O05Rik - 4|4 A5-B1 transmembrane protein 8B protein-coding 17729 TrnE - - - tRNA tRNA 19086 Prkar1b-rs - - - protein kinase, cAMP dependent regulatory, type I beta, related sequence unknown 101055959 LOC101055959 - - X D pre-mRNA-splicing factor CWC22 homolog pseudo 105242963 Gm39026 - - 7|7 predicted gene, 39026 ncRNA 66168 Mm.41665 NM_023168 ENSMUSG00000022564 Grina 1110025J15Rik|Lag|Tmbim3 - 15 D3|15 glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) protein-coding 100124577 Vmn2r-ps27 - - 5|5 G3 vomeronasal 2, receptor, pseudogene 27 pseudo 105246961 XM_011249626 AB010352 Mszf33 - 5|5 F cDNA sequence AB010352 protein-coding 27029 Mm.103788 NM_018822 ENSMUSG00000005043 Sgsh 4632406A19Rik - 11 E2|11 83.36 cM N-sulfoglucosamine sulfohydrolase (sulfamidase) protein-coding 102635064 Gm32495 - - 13|13 predicted gene, 32495 ncRNA 100417500 Gm18650 - - 17|17 E3 alkaline phosphatase, intestinal pseudogene pseudo 67142 2510019K15Rik - - 2|2 RIKEN cDNA 2510019K15 gene protein-coding 78403 Mm.212543 NR_015489 2900041M22Rik - - 11|11 E2 RIKEN cDNA 2900041M22 gene ncRNA 100039315 Mm.426539 NM_001105254 ENSMUSG00000066027 Gm10436 - - 12|12 D2 predicted gene 10436 protein-coding 105246778 XR_878735 Gm16064 - - 5 F|5 60.33 cM predicted gene 16064 ncRNA 69186 Mm.248772 NM_026982 ENSMUSG00000070394 Tmem256 1810027O10Rik|3110009M16Rik - 11|11 B3 transmembrane protein 256 protein-coding 62958 D12Mit261 - - 12 56.99 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 261 unknown 23808 Mm.27706 NM_011791 ENSMUSG00000031575 Ash2l - - 8|8 A2 ASH2 like histone lysine methyltransferase complex subunit protein-coding 227394 Mm.11662 NM_172658 ENSMUSG00000040693 Slco4c1 9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R - 1|1 D solute carrier organic anion transporter family, member 4C1 protein-coding 108168798 XR_001783491 LOC108168798 - - 2 F3 uncharacterized LOC108168798 ncRNA 27853 D0Nds11 - - - DNA segment, Nuffield Department of Surgery 11 unknown 102467559 n-TLtag1 n-Tl27 - 7 F2|7 nuclear encoded tRNA leucine 1 (anticodon TAG) tRNA 111337 Hoxd Hox-4|Hox-5|Ul|ulnaless - 2|2 homeobox D cluster other 100043029 Mm.482058 NM_001167169 ENSMUSG00000095163 Vmn1r138 Gm4179 - 7 A3|7 vomeronasal 1 receptor 138 protein-coding 100861928 Gm21333 - - Y|Y predicted gene, 21333 protein-coding 546176 XM_003945709 Gm5923 EG546176 - X|X A3.1 predicted gene 5923 protein-coding 53182 MHAA30G12.seq - - - DNA segment, MHAA30G12.seq unknown 68776 Mm.267998 NM_026836 ENSMUSG00000024218 Taf11 1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28 - 17|17 A3.3 TATA-box binding protein associated factor 11 protein-coding 100036148 Fmgty4 - - 5 63.84 cM femur geometry 4 unknown 627427 NR_076393 ENSMUSG00000063514 Gm6756 EG627427 - 18 B2|18 3-phosphoglycerate dehydrogenase pseudogene pseudo 634869 LOC634869 - - - MHC c6/g2 (Qa-2) protein protein-coding 97057 C77368 - - - expressed sequence C77368 protein-coding 666557 Gm13158 - - 4|4 E1 predicted gene 13158 pseudo 382823 XR_001590 Atp5c1-ps C80464|D13Mgi7 - 13|13 C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, pseudogene unknown 16378 Is(17;In2)1Gso Is1Gso - - insertion, Chr 17 piece into inverted Chr 2, Generoso 1 other 80281 Mm.200327 NM_030249 ENSMUSG00000062127 Cttnbp2nl AA552995|AA589392|AU018624|BC003236|mKIAA1433 - 3|3 F2.2 CTTNBP2 N-terminal like protein-coding 171196 Mm.377175 NM_134178 ENSMUSG00000115091 Vmn1r22 V1rc23 - 6|6 B3 vomeronasal 1 receptor 22 protein-coding 16559 Mm.271936 NM_010623 ENSMUSG00000028758 Kif17 5930435E01Rik|AW492270|Kif17b|mKIAA1405 - 4|4 D3 kinesin family member 17 protein-coding 107711 Tcrbe - - - T cell receptor beta chain enhancer other 108123 Mm.292687 NM_028017 ENSMUSG00000024581 Napg 2400003O04Rik|SNARE - 18|18 E1 N-ethylmaleimide sensitive fusion protein attachment protein gamma protein-coding 109280091 LOC109280091 Mm817 - - VISTA enhancer mm817 biological-region 97952 C77581 - - - expressed sequence C77581 unknown 72153 2610020P09Rik - - 4|4 RIKEN cDNA 2610020P09 gene protein-coding 100416643 Gm11764 - - 2|2 G1 TM2 domain containing 1 pseudogene pseudo 53059 CAH9.3 - - - DNA segment, CAH9.3 unknown 102631617 Gm29912 - - 18|18 predicted gene, 29912 ncRNA 319816 Mm.383665 9630010A21Rik - - 1|1 RIKEN cDNA 9630010A21 gene protein-coding 68652 Mm.193041 NM_138667 ENSMUSG00000015755 Tab2 1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733 - 10|10 A1 TGF-beta activated kinase 1/MAP3K7 binding protein 2 protein-coding 69686 2310066D07Rik - - 2|2 RIKEN cDNA 2310066D07 gene protein-coding 56031 Mm.126873 NM_019489 ENSMUSG00000028651 Ppie 2010010D16Rik|Cyp33 - 4|4 D2.2 peptidylprolyl isomerase E (cyclophilin E) protein-coding 102633933 Gm31635 - - 8|8 predicted gene, 31635 protein-coding 60976 D16Mit1 - - 16 12.89 cM DNA segment, Chr 16, Massachusetts Institute of Technology 1 unknown 102635777 Gm11506 - - 11|11 58.81 cM predicted gene 11506 pseudo 100042175 NM_001099347 ENSMUSG00000095546 Gm10230 - - X A2|X predicted gene 10230 protein-coding 105246648 Gm41906 - - 1|1 predicted gene, 41906 ncRNA 67685 Mm.31817 NM_026314 ENSMUSG00000092192 Dyx1c1 1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo - 9|9 D dyslexia susceptibility 1 candidate 1 protein-coding 257726 Olfr751-ps1 GA_x5J8B7W4NS2-37772-38277|Olfr1190-ps1 - 2|2 D olfactory receptor 751, pseudogene 1 pseudo 276712 293M16.R - - - DNA segment, 293M16.R unknown 100035476 Gf6 - - - gonadal fat pad weight 6 unknown 53379 Mm.155896 NM_016806 ENSMUSG00000004980 Hnrnpa2b1 9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A - 6|6 B3 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 110999 Capza1-ps2 Cappa1-ps2 - - capping protein (actin filament) muscle Z-line, alpha 1, pseudogene 2 pseudo 105431 AA536951 - - - expressed sequence AA536951 unknown 108168487 XR_001782846 Gm46690 - - X F3|X predicted gene, 46690 ncRNA 102638744 Mm.417206 XR_881948 Gm12784 - - 7 B2|7 20.09 cM predicted gene 12784 ncRNA 257635 Mm.5162 NM_133902 ENSMUSG00000029596 Sdsl 4432411H13Rik|AI504310|SDH1|SDS-RS1|TDH - 5|5 F serine dehydratase-like protein-coding 74178 Mm.440269 NM_028800 ENSMUSG00000042608 Stk40 2310004N11Rik|AI428792 - 4|4 D2.2 serine/threonine kinase 40 protein-coding 109280126 LOC109280126 Mm1379 - - VISTA enhancer mm1379 biological-region 62940 D11Mit319 - - 11 48.89 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 319 unknown 102636266 XR_381435 Gm33380 - - 12 A3|12 predicted gene, 33380 ncRNA 102465713 NR_106095 ENSMUSG00000098981 Mir7236 Gm28005|mmu-mir-7236 - 11|11 E2 microRNA 7236 ncRNA 492981 Im4 LCH6 - 6 35.13 cM immunoregulatory 4 unknown 100417698 Gm18768 - - 2|2 E1 mannosidase, alpha, class 1B, member 1 pseudogene pseudo 68915 Mm.32002 NM_175137 ENSMUSG00000038838 Vars2 1190004I24Rik|Vars2l|mKIAA1885 - 17|17 B1 valyl-tRNA synthetase 2, mitochondrial protein-coding 102632241 XR_379333 Gm30373 - - 9 A5.1|9 predicted gene, 30373 ncRNA 100041729 Gm3486 - - 14 B|14 predicted gene 3486 protein-coding 77106 Mm.381893 NM_001033178 ENSMUSG00000038141 Tmem181a 5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423 - 17|17 A1 transmembrane protein 181A protein-coding 77330 C030011G24Rik - - 2|2 RIKEN cDNA C030011G24 gene protein-coding 102633422 XR_384256 Gm31253 - - 15 E1|15 predicted gene, 31253 ncRNA 102641118 XR_875583 Gm38535 - - 15 E3|15 predicted gene, 38535 ncRNA 73955 4930449I04Rik - - 5|5 RIKEN cDNA 4930449I04 gene protein-coding 105245118 XR_871507 Gm40612 - - 10 A3|10 predicted gene, 40612 ncRNA 102633240 XR_390646 Gm31115 - - 4 C1|4 predicted gene, 31115 ncRNA 434412 Mm.490707 NR_045745 ENSMUSG00000111841 Gm20745 - - 9|9 C predicted gene, 20745 ncRNA 102636929 Mm.317208 XR_376153 Gm33867 - - 3 H1|3 predicted gene, 33867 ncRNA 15291 Hmgb1-rs11 Hmg1-rs11 - - high mobility group box 1, related sequence 11 pseudo 108168196 XR_001781414 Gm46480 - - 14 D1|14 predicted gene, 46480 ncRNA 102633584 LOC102633584 - - 2 C1.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 751547 NR_030438 ENSMUSG00000076316 Mir673 Mirn673|mir-673|mmu-mir-673 - 12 F1|12 microRNA 673 ncRNA 27817 133J02F - - - DNA segment, 133J02F (Research Genetics) unknown 327958 Mm.351793 NM_001024927 ENSMUSG00000040543 Pitpnm3 A330068P14Rik|AI848332|Ackr6|Gm880 - 11|11 B4 PITPNM family member 3 protein-coding 16476 Mm.275071 NM_010591 ENSMUSG00000052684 Jun AP-1|Junc|c-jun - 4 C5|4 43.34 cM jun proto-oncogene protein-coding 665267 Gm7561 EG665267 - 8|8 B3.1 ribosomal protein S2 pseudogene pseudo 109280148 LOC109280148 Mm1351 - - VISTA enhancer mm1351 biological-region 100043938 Gm14720 - - X|X A1.1 predicted gene 14720 protein-coding 17735 TrnL1 - - - tRNA tRNA 102640122 Gm29428 - - 1 E4|1 predicted gene 29428 pseudo 668552 Gm9236 EG668552 - 12 F2|12 high mobility group box 2 pseudogene pseudo 16451 Mm.289657 NM_146145 ENSMUSG00000028530 Jak1 AA960307|BAP004|C130039L05Rik - 4 C6|4 46.19 cM Janus kinase 1 protein-coding 100035531 Mnic3 - - - macronutrient intake, carbohydrate 3 unknown 227682 Mm.245739 NM_145520 ENSMUSG00000039826 Trub2 G430055L02Rik - 2|2 B TruB pseudouridine (psi) synthase family member 2 protein-coding 83565 Mm.108239 NM_031390 ENSMUSG00000067360 Pramel3 - - X|X F1 preferentially expressed antigen in melanoma-like 3 protein-coding 109279970 LOC109279970 Mm610 - - VISTA enhancer mm610 biological-region 100312536 Vmn1r-ps107 Gm11299 - 13|13 A3.1 vomeronasal 1 receptor, pseudogene 107 pseudo 100502790 Gm12239 - - 11|11 33.28 cM predicted gene 12239 protein-coding 102466989 NR_105905 ENSMUSG00000099165 Mir6940 Gm27655|mmu-mir-6940 - 12|12 F1 microRNA 6940 ncRNA 102642041 XR_876918 Gm38593 - - 17 E1.2|17 predicted gene, 38593 ncRNA 100416870 Gm13521 - - 2|2 C1.1 predicted gene 13521 pseudo 97212 Mm.200497 NM_178878 ENSMUSG00000025745 Hadha C77020|Mtpa - 5|5 B1 hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit protein-coding 102638622 XR_388010 Gm35145 - - 8 D3|8 predicted gene, 35145 ncRNA 100126193 Tsti2 - - - tail suspension test immobility 2 unknown 105246086 Mm.438013 XR_875951 Gm26744 - - 16 B1|16 predicted gene, 26744 ncRNA 100124553 Vmn2r-ps52 - - 7|7 A1 vomeronasal 2, receptor, pseudogene 52 pseudo 668971 Gm14451 - - X|X A1.1 polypyrimidine tract binding protein 1 pseudogene pseudo 547168 Mm.391251 NM_001025086 ENSMUSG00000071767 Rhox7a Gm712|Rhox7 - X|X A3.3 reproductive homeobox 7A protein-coding 229474 Mm.331107 NM_001033301 ENSMUSG00000041842 Fhdc1 6330505N24Rik|Gm126 - 3|3 F1 FH2 domain containing 1 protein-coding 61956 D7Mit313 - - 7 34.89 cM DNA Segment, Chr 7, Massachusetts Institute of Technology 313 unknown 100036024 Rfpw5 Rf5 - - retroperitoneal fat pad weight 5 unknown 102639793 XR_377966 Gm36023 - - 6 E3|6 predicted gene, 36023 ncRNA 108504 Mpmv30 Mpmv-30 - - modified polytropic murine leukemia virus 30 other 78251 Mm.297247 NM_001166218 ENSMUSG00000090641 Zfp712 4921504N20Rik|mszf31|mszf89 - 13|13 B3 zinc finger protein 712 protein-coding 21322 T(X;7)3Neu T3Neu - - reciprocal translocation, Chr X and 7, Neuhauser-Klaus 3 other 76047 5830433M15Rik - - 13|13 RIKEN cDNA 5830433M15 gene protein-coding 108429 Xmmv44 Xmmv-44|Xp-3 - - xenotropic-MCF leukemia virus 44 other 108167729 XR_001779455 Gm46159 - - 1 E4|1 predicted gene, 46159 ncRNA 100861719 XR_001781248 Gm21162 - - 14 C1|14 predicted gene, 21162 protein-coding 107999 Mm.86267 NM_145147 ENSMUSG00000033434 Gtpbp6 AV119224|Pgbpll|pgpl - 5|5 F GTP binding protein 6 (putative) protein-coding 11464 Mm.686 NM_009608 ENSMUSG00000068614 Actc1 Actc-1 - 2 E4|2 57.55 cM actin, alpha, cardiac muscle 1 protein-coding 613122 Ugt1a4-ps - - - UDP glucuronosyltransferase 1 family, polypeptide A4, pseudogene pseudo 109516 Alcp19 - - - alcohol preference locus 19, female specific unknown 77599 Mm.438573 5830420C07Rik - - 11|11 RIKEN cDNA 5830420C07 gene protein-coding 56289 Mm.12091 NM_019713 ENSMUSG00000010067 Rassf1 123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C - 9|9 F1 Ras association (RalGDS/AF-6) domain family member 1 protein-coding 282620 D15Kus1 - - - DNA segment, Chr 15, Kusakabe 1 unknown 625861 Gm13573 - - 2|2 C1.1 ribosomal protein L10A pseudogene pseudo 622745 Gm6352 EG622745 - 6|6 B2.3 cyclin I pseudogene pseudo 53023 B308A - - - DNA segment, B308A unknown 14429 Mm.390805 NM_015738 ENSMUSG00000114755 Galr3 Galnr3 - 15 E1|15 37.7 cM galanin receptor 3 protein-coding 21134 T(2;4)1Go T1Go - - reciprocal translocation, Chr 2 and 4, Gottingen 1 other 102636705 XR_386353 Gm33703 - - 18 E3|18 predicted gene, 33703 ncRNA 67338 Mm.341608 NM_026097 ENSMUSG00000020696 Rffl 1700051E09Rik|4930516L10Rik|BG080975|Carp2 - 11|11 C ring finger and FYVE like domain containing protein protein-coding 105244436 XR_867246 Gm37548 - - 3 C|3 predicted gene, 37548 ncRNA 102638862 Gm35324 - - X|X predicted gene, 35324 protein-coding 12953 Mm.254181 NM_009963 ENSMUSG00000068742 Cry2 AV006279|D130054K12Rik - 2|2 E1 cryptochrome 2 (photolyase-like) protein-coding 108167310 LOC108167310 - - 12 C1 Nkx2-1 Hedgehog-responsive enhancer biological-region 55943 Mm.3973 NM_018768 ENSMUSG00000020903 Stx8 0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB - 11|11 B3 syntaxin 8 protein-coding 78873 B230207N12Rik - - 11|11 RIKEN cDNA B230207N12 gene protein-coding 208613 Mm.59189 NM_001164437 ENSMUSG00000043164 Tmem212 E030011K20Rik|Gm564 - 3|3 A3 transmembrane protein 212 protein-coding 100035011 Fmgty7 - - 8 43.17 cM femur geometry 7 unknown 14259 fm - - - foam cell reticulosis unknown 399581 C130057M05Rik - - - RIKEN cDNA C130057M05 gene protein-coding 777658 Ighd1-2 Igh - 12|12 F2 immunoglobulin heavy diversity 1-2 other 102637675 XR_385407 Gm34426 - - 17 A2|17 predicted gene, 34426 ncRNA 102634576 Mm.317855 NR_153781 Gm32123 - - 14 A3|14 predicted gene, 32123 ncRNA 67877 Mm.151168 NM_026425 ENSMUSG00000002728 Naa20 1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5 - 2 G1|2 71.28 cM N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 20590 smc - - - spondylo-metaphyseal chondrodysplasia unknown 100416356 Gm15660 - - 8|8 C2 cofilin 1, non-muscle pseudogene pseudo 641387 Mm.422789 1700120B22Rik - - 10 B4|10 RIKEN cDNA 1700120B22 gene protein-coding 102632542 XR_390637 Gm30589 - - 4 B3|4 predicted gene, 30589 ncRNA 108169071 XR_001784978 Gm43001 - - 5 G1.3|5 predicted gene 43001 ncRNA 100038644 Mm.446248 Gm10667 - - - predicted gene 10667 unknown 102637822 XR_373696 Gm34535 - - 1 H2.3|1 predicted gene, 34535 ncRNA 100042428 Mm.458580 NM_001160136 ENSMUSG00000095867 Gm20917 - - Y|Y D predicted gene, 20917 protein-coding 12684 Mm.466766 NM_009894 ENSMUSG00000022219 Cideb 1110030C18Rik|AI790179|CIDE-B - 14|14 C3 cell death-inducing DNA fragmentation factor, alpha subunit-like effector B protein-coding 27632 Mm.653 NM_138580 ENSMUSG00000024369 Nelfe D17H6S45|NELF-E|RD|Rdbp - 17 B1|17 18.4 cM negative elongation factor complex member E, Rdbp protein-coding 102467395 n-TYgta2 n-Ty2 - 3 A2|3 nuclear encoded tRNA tyrosine 2 (anticodon GTA) tRNA 62020 D4Mit332 - - 4 52.02 cM DNA segment, Chr 4, Massachusetts Institute of Technology 332 unknown 100035318 Orgwt4 - - - organ weight 4 unknown 108169017 XR_001784575 Gm46898 - - 4 E1|4 predicted gene, 46898 ncRNA 100037255 Idd4.3 Idd4c - - insulin dependent diabetes susceptibility 4.3 unknown 110547 Cltd-rs - - - clathrin, heavy peptide, related sequence protein-coding 62424 D12Mit219 - - 12 9.69 cM DNA segment, Chr 12, Massachusetts Institute of Technology 219 unknown 78616 Mm.446348 XR_105045 9530036M11Rik - - 6|6 B3 RIKEN cDNA 9530036M11 gene unknown 102466627 NR_105752 ENSMUSG00000098734 Mir6335 Gm27836|mmu-mir-6335 - 2|2 C1.3 microRNA 6335 ncRNA 105787 Mm.207004 NM_001013367 ENSMUSG00000050697 Prkaa1 AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik - 15|15 A1 protein kinase, AMP-activated, alpha 1 catalytic subunit protein-coding 111755 Iapls2-3 - - - intracisternal A particle, lymphocyte specific 2-3 other 111997 Cq2 Chol4 - 1 81.08 cM cholesterol QTL 2 unknown 77781 Mm.209005 NM_175266 ENSMUSG00000046785 Epm2aip1 A930003G21Rik|mKIAA0766 - 9|9 F3 EPM2A (laforin) interacting protein 1 protein-coding 102465637 NR_106019 ENSMUSG00000098661 Mir7052 Gm27583|mmu-mir-7052 - 7|7 B3 microRNA 7052 ncRNA 105246176 XR_876303 Gm41510 - - 16 C4|16 predicted gene, 41510 ncRNA 20622 sno - - - snubnose unknown 100504361 XR_375169 Gm14230 - - 2 H1|2 77.85 cM predicted gene 14230 ncRNA 105243519 XR_880245 Gm39417 - - 11 E1|11 predicted gene, 39417 ncRNA 52181 D5Ertd163e - - 5 34.01 cM DNA segment, Chr 5, ERATO Doi 163, expressed unknown 668147 Gm13284 - - 4|4 C4 interferon zeta family Ifnz pseudogene pseudo 61993 DXMit189 - - X 73.93 cM DNA Segment, Chr X, Massachusetts Institute of Technology 189 unknown 76511 Mm.35291 2010004M13Rik AI853118 - - RIKEN cDNA 2010004M13 gene protein-coding 77485 Mm.128054 NM_029916 ENSMUSG00000023403 Stk31 C330007K24Rik - 6|6 B2.3 serine threonine kinase 31 protein-coding 67437 Mm.232728 NM_026155 ENSMUSG00000027828 Ssr3 0610038P07Rik|AL022999|AU022074|AW553833|TRAPG - 3|3 E1 signal sequence receptor, gamma protein-coding 56544 Mm.57069 NM_019918 ENSMUSG00000027824 Vmn2r1 Casrl1|EG56544|V2r83 - 3|3 E1 vomeronasal 2, receptor 1 protein-coding 108167586 XR_001778764 Gm46072 - - 8 E2|8 predicted gene, 46072 ncRNA 22294 Mm.34779 NM_013840 ENSMUSG00000001134 Uxt 0910002B17Rik - X|X A1.3 ubiquitously expressed transcript protein-coding 104266 Tsp2 MTS - - tumor suppressor region 2 protein-coding 14670 Mm.335754 NM_008136 ENSMUSG00000024429 Gnl1 Gna-rs1|Gnal1 - 17 B1|17 18.82 cM guanine nucleotide binding protein-like 1 protein-coding 102638534 Gm28835 - - Y|Y predicted gene 28835 ncRNA 100042765 Obox4-ps31 Gm4018 - 7 A2|7 oocyte specific homeobox 4, pseudogene 31 pseudo 67222 Mm.100617 NM_026040 ENSMUSG00000024528 Srfbp1 2810036K01Rik|p49/STRAP - 18|18 D1 serum response factor binding protein 1 protein-coding 229562 Mm.246590 NM_173070 ENSMUSG00000045566 Sprr4 - - 3 F1|3 40.14 cM small proline-rich protein 4 protein-coding 102635954 XR_866667 Gm14089 - - 2 E5|2 59.8 cM predicted gene 14089 ncRNA 111311 Hmgn2-rs10 Hmg17-rs10 - - high mobility group nucleosomal binding domain 2, related sequence 10 pseudo 100417291 Gm18508 - - 10|10 A4 splicing factor 3b, subunit 1 pseudogene pseudo 102638783 XR_374598 Gm35265 - - 2 C1.3|2 predicted gene, 35265 ncRNA 65105 Mm.29430 NM_144509 ENSMUSG00000029404 Arl6ip4 AA408210|AA408365|Aip-4|Srp25 - 5|5 F ADP-ribosylation factor-like 6 interacting protein 4 protein-coding 105244045 XR_865825 Gm37662 - - 1 H5|1 predicted gene, 37662 ncRNA 257969 Olfr1374-ps1 MOR256-44P - 11|11 B1.3 olfactory receptor 1374, pseudogene 1 pseudo 258054 Olfr501-ps1 MOR204-27P - 7|7 E3 olfactory receptor 501, pseudogene 1 pseudo 106050036 Slge - - - Shh lung-gut enhancer biological-region 76769 2010003K10Rik - - 2|2 RIKEN cDNA 2010003K10 gene protein-coding 76074 Mm.458519 NM_029509 ENSMUSG00000034438 Gbp8 5830443L24Rik|mGBP8 - 5|5 E5 guanylate-binding protein 8 protein-coding 112070 Bpq1 - - - blood pressure QTL 1 unknown 108168123 n-TMcat10 Trnam-cau|n-Tm10 - 13 A3.1|13 nuclear encoded tRNA methionine 10 (anticodon CAT) tRNA 108897 Mm.24838 NM_145144 ENSMUSG00000001864 Aif1l 2810003C17Rik|AI043124|C87647|Iba2 - 2|2 B allograft inflammatory factor 1-like protein-coding 97813 C80435 - - - expressed sequence C80435 unknown 100043582 Mm.11170 NR_045899 ENSMUSG00000073377 AU016765 - - 17|17 E1.1 expressed sequence AU016765 ncRNA 216622 Mm.443260 NM_176829 ENSMUSG00000078157 4931440F15Rik Fem1ab - 11|11 A3.3 RIKEN cDNA 4931440F15 gene protein-coding 105244904 XR_872782 Gm40428 - - 12 C1|12 predicted gene, 40428 ncRNA 102637663 Gm34417 - - 14 E2.3|14 predicted gene, 34417 pseudo 102465774 NR_106134 ENSMUSG00000098553 Mir3569 Gm27279|mmu-mir-3569 - 7|7 B1 microRNA 3569 ncRNA 75060 Mm.426530 NR_073374 ENSMUSG00000087478 4930506C21Rik - - 17|17 A1 RIKEN cDNA 4930506C21 gene ncRNA 102632332 Gm16121 - - 5|5 78.85 cM predicted gene 16121 ncRNA 100036432 Dmyaq3 - - 15 53.94 cM darker modification of yellow agouti QTL 3 unknown 110357 Mod2 Cd243|Mdr|Mdr-1|Mod-2|Mod-2r|Mod-2s|Mod2-r|Mod2-s - - malic enzyme complex, mitochondrial protein-coding 68512 Mm.282081 NM_001099675 ENSMUSG00000078713 Tomm5 1110019J04Rik|Tom5 - 4|4 B1 translocase of outer mitochondrial membrane 5 protein-coding 213550 Mm.268341 NM_172519 ENSMUSG00000032396 Dis3l AV340375 - 9|9 C DIS3 like exosome 3'-5' exoribonuclease protein-coding 102634722 XR_376399 Gm32240 - - 4 C5|4 predicted gene, 32240 ncRNA 17710 COX3 - - - cytochrome c oxidase subunit III protein-coding 108168891 XR_001783953 Gm12498 - - 3 F2.3|3 46.83 cM predicted gene 12498 ncRNA 360217 Mm.271560 NM_183039 ENSMUSG00000053678 Defb40 BD-40 - 8|8 A1.3 defensin beta 40 protein-coding 105247115 XR_881194 Gm42273 - - 4 A5|4 predicted gene, 42273 ncRNA 17311 Mm.45124 NM_013598 ENSMUSG00000019966 Kitl Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted - 10 D1|10 51.4 cM kit ligand protein-coding 116528 Obq15 - - 7 57.21 cM obesity QTL 15 unknown 105244224 XR_866519 Gm39871 - - 2 E1|2 predicted gene, 39871 ncRNA 102637023 Gm33935 - - 14|14 predicted gene, 33935 ncRNA 387214 Mir218 Mirn218 - - microRNA 218 ncRNA 20585 Mm.209650 NM_009210 ENSMUSG00000002428 Hltf AF010600|BC057116|P113|Smarca3|Snf2l3 - 3 A2|3 6.15 cM helicase-like transcription factor protein-coding 111606 Xmv22 Xmv-22 - - xenotropic murine leukemia virus 22 other 100035299 Chcmq1 - - 2 53.67 cM mean cell hemoglobin concentration QTL 1 unknown 545182 Mm.446488 XR_001781886 ENSMUSG00000022500 Gm9861 - - 16 A1|16 predicted gene 9861 ncRNA 109279898 LOC109279898 Mm78 - - VISTA enhancer mm78 biological-region 100038564 Mm.34438 Gm10524 - - - predicted gene 10524 protein-coding 20807 Mm.45044 NM_020493 ENSMUSG00000015605 Srf AW049942|AW240594 - 17|17 C serum response factor protein-coding 74355 Mm.194450 NM_028887 ENSMUSG00000024054 Smchd1 4931400A14Rik|AW554188|MommeD1|mKIAA0650 - 17|17 E1.3 SMC hinge domain containing 1 protein-coding 234582 Mm.277871 NM_001033533 ENSMUSG00000063605 Ccdc102a BC027663|Gm586 - 8|8 C5 coiled-coil domain containing 102A protein-coding 102636213 XR_377004 Gm33345 - - 5 C3.1|5 predicted gene, 33345 ncRNA 100526468 NR_037223 ENSMUSG00000093358 Mir3063 mmu-mir-3063 - 11 D|11 59.08 cM microRNA 3063 ncRNA 105245702 XR_874439 Gm41113 - - 14 A3|14 predicted gene, 41113 ncRNA 102635886 XR_391190 Gm33109 - - 7 A2|7 predicted gene, 33109 ncRNA 100416294 Gm14631 - - X|X A6 ribosomal protein L18 pseudogene pseudo 100416147 Gm17941 - - 14|14 D1 tubulin, alpha 3B pseudogene pseudo 434434 XM_889722 Gm5621 EG434434 - 9|9 F1 predicted gene 5621 protein-coding 100416253 Gm18004 - - 4|4 A5 ribosomal protein L8 pseudogene pseudo 108167869 LOC108167869 - - 11 B5 60S ribosomal protein L15 pseudogene pseudo 229709 Mm.220328 NM_145542 ENSMUSG00000027893 Ahcyl1 1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit - 3 F2.3|3 46.83 cM S-adenosylhomocysteine hydrolase-like 1 protein-coding 61399 D5Mit155 - - 5 48.46 cM DNA segment, Chr 5, Massachusetts Institute of Technology 155 unknown 100124557 Vmn2r-ps59 - - 7|7 B3 vomeronasal 2, receptor, pseudogene 59 pseudo 105246700 XR_001779393 Gm41947 - - 1 E3|1 predicted gene, 41947 ncRNA 62513 D11Mit116 - - 11 46.17 cM DNA segment, Chr 11, Massachusetts Institute of Technology 116 unknown 675498 Gm29691 - - 1|1 E2.1 predicted gene, 29691 pseudo 104337 Gct1 Gct - 4 78.17 cM granulosa cell tumorigenesis 1 unknown 102636867 Gm33820 - - 13|13 predicted gene, 33820 ncRNA 77674 Mm.281961 NM_152802 ENSMUSG00000043787 Defb12 9230103N16Rik|BD-12 - 8|8 A1.3 defensin beta 12 protein-coding 17390 Mm.29564 NM_008610 ENSMUSG00000031740 Mmp2 Clg4a|GelA|MMP-2 - 8 C5|8 44.99 cM matrix metallopeptidase 2 protein-coding 653016 Mm.45676 NM_001177468 ENSMUSG00000079471 Mymx EG653016|Esgp|Gm7325|minion|myomerger - 17|17 B3 myomixer, myoblast fusion factor protein-coding 59024 Mm.20873 NM_021521 ENSMUSG00000079487 Med12 230kDa|Mopa|OPA-1|Tnrc11|Trap230 - X|X D mediator complex subunit 12 protein-coding 109280037 LOC109280037 Mm276 - - VISTA enhancer mm276 biological-region 110553 H2-D3 H-2D3 - - histocompatibility 2, D region locus 3 protein-coding 666635 Gm8204 EG666635 - 1|1 E2.2 BEN domain containing 3 pseudogene pseudo 216363 Mm.336394 NM_001003950 ENSMUSG00000064181 Rab3ip B230311A06|Gtpat12|Rabin3 - 10 D2|10 64.96 cM RAB3A interacting protein protein-coding 319152 Mm.377874 NM_178206 ENSMUSG00000101355 Hist1h3h H3-291 - 13|13 A3.1 histone cluster 1, H3h protein-coding 230673 Mm.287810 NM_146152 ENSMUSG00000033365 Ipo13 Imp13|Kap13|Ranbp13 - 4|4 D2.1 importin 13 protein-coding 102640433 XR_381348 Gm36496 - - 12 A1.3|12 predicted gene, 36496 ncRNA 319630 NM_176964 A130014H13Rik - - 12|12 F1 RIKEN cDNA A130014H13 gene unknown 108989 Mm.174256 NM_133780 ENSMUSG00000006005 Tpr 2610029M07Rik|C77892 - 1|1 G1 translocated promoter region, nuclear basket protein protein-coding 109279958 LOC109279958 Mm423 - - VISTA enhancer mm423 biological-region 381833 Mm.7982 NM_198669 ENSMUSG00000067543 Prb1 BC011176|Prpg2 - 6|6 G1 proline-rich protein BstNI subfamily 1 protein-coding 224916 Mm.469889 NM_001104591 ENSMUSG00000090655 Vmn2r120 EG224916 - 17|17 D vomeronasal 2, receptor 120 protein-coding 62301 D1Mit152 - - 1 89.3 cM DNA segment, Chr 1, Massachusetts Institute of Technology 152 unknown 102635801 XR_389039 LOC102635801 - - 11 D uncharacterized LOC102635801 ncRNA 100384890 Mm.484658 NR_045947 ENSMUSG00000113875 D230030E09Rik Npe - 12 F2|12 Riken cDNA D230030E09 gene ncRNA 67454 Mm.252843 NM_026166 ENSMUSG00000019975 Ikbip 1200009F10Rik|1700023M03Rik|D18354|Ikip - 10|10 C2 IKBKB interacting protein protein-coding 105242698 XR_869202 Gm38844 - - 6 C3|6 predicted gene, 38844 ncRNA 18519 Mm.255025 NM_020005 ENSMUSG00000000708 Kat2b A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF - 17 C|17 27.86 cM K(lysine) acetyltransferase 2B protein-coding 212555 Mm.45131 NM_145384 ENSMUSG00000028744 Pqlc2 BC019216 - 4|4 D3 PQ loop repeat containing 2 protein-coding 100036507 Rfpw7 Rf7 - - retroperitoneal fat pad weight 7 unknown 21676 Mm.24685 NM_009346 ENSMUSG00000055320 Tead1 2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1 - 7|7 F1 TEA domain family member 1 protein-coding 105246521 XR_877647 Gm41800 - - 18 E4|18 predicted gene, 41800 ncRNA 232441 Mm.46233 NM_181988 ENSMUSG00000030222 Rerg - - 6|6 G1 RAS-like, estrogen-regulated, growth-inhibitor protein-coding 104138 H50 H(Eh) - - histocompatibility 50 protein-coding 108168344 XR_001782194 Gm46599 - - 17 A1|17 predicted gene, 46599 ncRNA 100418359 Gm19161 - - 10|10 A1 TIP41, TOR signalling pathway regulator-like pseudogene pseudo 330812 Mm.491438 NM_177378 ENSMUSG00000047747 Rnf150 A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214 - 8|8 C2 ring finger protein 150 protein-coding 69513 Mm.273972 NR_015521 ENSMUSG00000099759 1700030C10Rik - - 12|12 A1.2 RIKEN cDNA 1700030C10 gene ncRNA 102642726 XR_865403 Gm38628 - - 1 C1.1|1 predicted gene, 38628 ncRNA 667826 Gm12230 - - 11|11 B1.3 predicted gene 12230 pseudo 68016 Mm.133444 NM_026509 ENSMUSG00000028348 Cavin4 2310039E09Rik|Murc - 4|4 B1 caveolae associated 4 protein-coding 111841 Iapls2-12 - - - intracisternal A particle, lymphocyte specific 2-12 other 102633706 Gm31466 - - 3|3 predicted gene, 31466 ncRNA 51907 D3Ertd547e - - - DNA segment, Chr 3, ERATO Doi 547, expressed unknown 13268 Del(13)36H Del36H|Svea - - deletion, Chr 13, Harwell 36 other 61087 D6Mit308 - - 6 12.53 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 308 unknown 622365 Gm6317 EG622365 - 13|13 C1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100416520 Gm18142 - - 14|14 A2 predicted gene, 18142 pseudo 100039968 Mm.392655 NM_001099319 ENSMUSG00000070737 Tmem35b Gm12942|Zmym6nb - 4|4 D2.2 transmembrane protein 35B protein-coding 100043527 Gm10443 - - 6|6 D1 40S ribosomal protein S28 pseudogene pseudo 100416659 Gm18173 - - X|X F2 predicted gene, 18173 pseudo 171230 Mm.222642 NM_134196 ENSMUSG00000050933 Vmn1r231 V1re5|V1re7 - 17|17 A3.2 vomeronasal 1 receptor 231 protein-coding 212531 Mm.491246 NM_172507 ENSMUSG00000032261 Sh3bgrl2 A930014C21Rik|AA408038|B930089I21 - 9|9 E2 SH3 domain binding glutamic acid-rich protein like 2 protein-coding 102633919 Gm29248 - - Y|Y predicted gene 29248 ncRNA 72313 Mm.260594 NM_028194 ENSMUSG00000070733 Fryl 2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826 - 5|5 C3.2 FRY like transcription coactivator protein-coding 666485 XM_017316265 Gm8127 EG666485 - 14|14 B predicted gene 8127 protein-coding 85153 D1Mit344 - - 1 56.43 cM DNA segment, Chr 1, Massachusetts Institute of Technology 344 unknown 100035437 Eac2 - - - ethyl alcohol consumption QTL 2 unknown 17305 Mm.149235 NM_008595 ENSMUSG00000018169 Mfng AW546563 - 15 E1|15 37.69 cM MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 384308 Gm5298 EG384308 - 5 B3|5 tubulin polyglutamylase complex subunit 2 pseudogene pseudo 69193 Mm.374088 NR_040539 ENSMUSG00000099370 Platr10 2410007B07Rik - 3|3 E3 pluripotency associated transcript 10 ncRNA 61437 D6Mit105 - - 6 49.71 cM DNA segment, Chr 6, Massachusetts Institute of Technology 105 unknown 552875 Mm.227443 AU015680 - - - expressed sequence AU015680 protein-coding 492921 Pcfm4 - - 5 31.99 cM periosteal circumference and femur length 4 unknown 102633980 XR_380677 Gm31673 - - 10 C2|10 predicted gene, 31673 ncRNA 239364 Mm.60794 NM_001085421 ENSMUSG00000038984 Tspyl5 6330530B20|E130308C19Rik - 15|15 B3.1 testis-specific protein, Y-encoded-like 5 protein-coding 623151 Gm14886 EG623151 - X|X E1 predicted gene 14886 protein-coding 434023 Bj2 - - 6|6 C1 immunoglobulin light chain variable region other 22771 Mm.335350 NM_009573 ENSMUSG00000032368 Zic1 ZIC|ZNF201 - 9 E3.2|9 48.26 cM zinc finger protein of the cerebellum 1 protein-coding 100417783 Gm18823 - - 3|3 F2.2 transformer 2 alpha homolog pseudogene pseudo 102638980 Mm.149467 Gm35412 - - 12|12 predicted gene, 35412 ncRNA 257978 Mm.377321 NM_001011794 ENSMUSG00000056281 Olfr1322 MOR264-16P - X|X A5 olfactory receptor 1322 protein-coding 100418354 Gm19158 - - 14|14 C1 nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene pseudo 100040929 XR_001781713 ENSMUSG00000116174 Gm10362 - - 15|15 D3 ribosomal protein L17 pseudogene pseudo 61314 D3Mit148 - - 3 75.94 cM DNA segment, Chr 3, Massachusetts Institute of Technology 148 unknown 100502876 Mm.383358 NM_001195074 ENSMUSG00000091091 Kcnmb3 EG435726|Gm5707 - 3|3 A3 potassium large conductance calcium-activated channel, subfamily M, beta member 3 protein-coding 24057 Mm.218624 NM_013709 ENSMUSG00000020669 Sh3yl1 AI314953|Ray|YSC84 - 12|12 A2 Sh3 domain YSC-like 1 protein-coding 232680 Mm.268855 NM_001024698 ENSMUSG00000071553 Cpa2 - - 6|6 A3.3 carboxypeptidase A2, pancreatic protein-coding 52748 D19Wsu195e - - - DNA segment, Chr 19, Wayne State University 195, expressed unknown 102634633 XR_379230 Gm32171 - - 9 A4|9 predicted gene, 32171 ncRNA 72287 Mm.333798 NM_024413 ENSMUSG00000074170 Plekhf1 1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15 - 7|7 B3 pleckstrin homology domain containing, family F (with FYVE domain) member 1 protein-coding 100278 AU018039 - - - expressed sequence AU018039 protein-coding 102633108 XR_380240 Gm31016 - - 10 B1|10 predicted gene, 31016 ncRNA 110294 Btn-rs1 - - - butyrophilin related sequence 1 protein-coding 100036454 Btts - - 6 59.32 cM bitterness tasting unknown 109448 Pas1b Sluc3 - - pulmonary adenoma susceptibility 1b unknown 320485 Mm.405172 NR_040745 B230312C02Rik - - 2|2 H4 RIKEN cDNA B230312C02 gene ncRNA 239659 Mm.309917 NM_001024702 ENSMUSG00000001076 C1ql4 C1qtnf11|CTRP11 - 15|15 F1 complement component 1, q subcomponent-like 4 protein-coding 71839 Mm.272357 NM_027950 ENSMUSG00000074063 Osgin1 1700012B18Rik|Okl38 - 8|8 E1 oxidative stress induced growth inhibitor 1 protein-coding 723949 NR_029735 ENSMUSG00000065606 Mir16-2 Mirn16-2|mir-16-2 - 3|3 E1 microRNA 16-2 ncRNA 61724 D5Mit282 - - 5 74.78 cM DNA segment, Chr 5, Massachusetts Institute of Technology 282 unknown 633285 Mm.265114 NM_001146328 ENSMUSG00000033882 Rbm46 EG633285|Gm761 - 3|3 E3 RNA binding motif protein 46 protein-coding 665001 Mm.389398 NM_001099308 ENSMUSG00000078903 Gm14391 - - 2 H4|2 predicted gene 14391 protein-coding 70980 Mm.158518 NM_027634 ENSMUSG00000055643 Ubqln5 4931431F19Rik - 7|7 E3 ubiquilin 5 protein-coding 105244687 XR_868141 Gm40249 - - 4 D2.2|4 predicted gene, 40249 ncRNA 621588 Gm12943 - - 4|4 D2.2 40S ribosomal protein S28 pseudogene pseudo 665662 Gm7736 EG665662 - 17|17 A3.2 sperm motility kinase Y pseudogene pseudo 20698 Mm.20944 NM_011451 ENSMUSG00000061878 Sphk1 1110006G24Rik|Sk1|Spk1 - 11|11 E2 sphingosine kinase 1 protein-coding 102632914 XR_868655 Gm30866 - - 5 G2|5 predicted gene, 30866 ncRNA 19888 Mm.294263 NM_011283 ENSMUSG00000025900 Rp1 Dcdc3|Orp1|Rp1h|mG145 - 1 A1|1 1.65 cM retinitis pigmentosa 1 (human) protein-coding 100862072 XR_001781313 ENSMUSG00000094526 Gm21451 - - 14 D2|14 predicted gene, 21451 protein-coding 58543 D13Die42 - - - DNA segment, Chr 13, Dietrich 42 unknown 105243520 Gm39418 - - 9|9 predicted gene, 39418 ncRNA 52245 Mm.21901 NM_175095 ENSMUSG00000036513 Commd2 1190017G07Rik|AI047739|D3Ertd176e|HSPC042 - 3 D|3 27.94 cM COMM domain containing 2 protein-coding 100503730 Gm19860 - - 1|1 1.79 cM predicted gene, 19860 ncRNA 106007488 Mm.483079 NR_146400 Hotairm2 - - 6|6 Hoxa transcript antisense RNA, myeloid-specific 2 ncRNA 102637376 XR_880561 Gm34204 - - 5 F|5 predicted gene, 34204 ncRNA 105246644 XR_878281 Gm41902 - - X F3|X predicted gene, 41902 ncRNA 85147 D3Mit249 - - 3 50.38 cM DNA segment, Chr 3, Massachusetts Institute of Technology 249 unknown 102636821 Gm28255 - - Y|Y predicted gene 28255 protein-coding 667778 Gm11771 - - 11|11 E2 NADPH-dependent carbonyl reductase pseudogene pseudo 402731 2900046D03Rik - - 7|7 RIKEN cDNA 2900046D03 gene protein-coding 14636 Gln3-1 - - - GLN retrotransposon family 3-1 other 69491 Mm.392410 NR_045489 ENSMUSG00000098144 1700029N11Rik - - 13|13 A5 RIKEN cDNA 1700029N11 gene ncRNA 230767 Mm.441132 NM_198026 ENSMUSG00000040795 Iqcc BC026978 - 4|4 D2.2 IQ motif containing C protein-coding 109229 Mm.24197 NM_175411 ENSMUSG00000050471 Fam118b 2310022O21Rik|2700018L24Rik|C030004A17Rik|Ppp4r1l - 9|9 A4 family with sequence similarity 118, member B protein-coding 100503632 Mm.450368 Gm16892 - - 16|16 34.22 cM predicted gene, 16892 ncRNA 100416322 Gm18038 - - 5|5 A3 ribosomal protein S10 pseudogene pseudo 100416530 Gm18149 - - 18|18 E2 ribosomal protein L17 pseudogene pseudo 100418388 Gm19177 - - 6|6 E1 ARP1 actin-related protein 1 homolog B, centractin beta pseudogene pseudo 70930 Mm.258915 NM_001081350 ENSMUSG00000021392 Nol8 4921532D18Rik|5730412B09Rik - 13 A5|13 25.36 cM nucleolar protein 8 protein-coding 103175 Mm.27138 NR_027846 ENSMUSG00000031294 D630029K05Rik AI314111|AI875589 - 10|10 D2 RIKEN cDNA D630029K05 gene ncRNA 435752 Gm5710 EG435752 - 3|3 G1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 71981 Mm.47904 NM_028034 ENSMUSG00000030491 Tdrd12 2410004F06Rik|2410070K17Rik|ECAT8|EG434165|G1-476-14|repro23 - 7|7 B2 tudor domain containing 12 protein-coding 100040342 Gm10231 - - 17|17 A1 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) pseudogene pseudo 100504470 Gm20243 - - 17|17 29.84 cM predicted gene, 20243 pseudo 30928 Mm.330700 NM_013915 ENSMUSG00000063659 Zbtb18 RP58|Zfp238|Znf238.|zfp-238 - 1|1 H4 zinc finger and BTB domain containing 18 protein-coding 20391 Mm.18709 NM_009161 ENSMUSG00000001508 Sgca 50DAG|Asg - 11|11 D sarcoglycan, alpha (dystrophin-associated glycoprotein) protein-coding 101508 AI255212 - - - expressed sequence AI255212 unknown 381457 Mm.458570 NM_001081200 ENSMUSG00000078657 Crnn Gm1015 - 3|3 F1 cornulin protein-coding 100036390 Brml4 - - - bone response to mechanical loading 4 unknown 102632362 XR_386395 Gm30454 - - 18 E3|18 predicted gene, 30454 ncRNA 628696 Gm6905 EG628696 - 7|7 F2 predicted gene 6905 pseudo 102637868 XR_375054 Gm34570 - - 2 G1|2 predicted gene, 34570 ncRNA 235033 Mm.297661 NM_001030290 ENSMUSG00000053773 Rdh8 Gm182|prRDH - 9|9 A3 retinol dehydrogenase 8 protein-coding 11909 Mm.209903 NM_009715 ENSMUSG00000027104 Atf2 Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP - 2|2 C3 activating transcription factor 2 protein-coding 20683 Mm.4618 NM_013672 ENSMUSG00000001280 Sp1 1110003E12Rik|AA450830|AI845540|Sp1-1 - 15|15 F3 trans-acting transcription factor 1 protein-coding 21745 Mm.318736 NM_009351 ENSMUSG00000006281 Tep1 Tp1 - 14 C1|14 26.26 cM telomerase associated protein 1 protein-coding 68972 Mm.237188 NM_026895 ENSMUSG00000026632 Tatdn3 1500010M24Rik - 1|1 H6 TatD DNase domain containing 3 protein-coding 105245615 XR_873882 Gm41045 - - 13 D1|13 predicted gene, 41045 ncRNA 108169053 LOC108169053 - - 5 E1 60S ribosomal protein L21 pseudogene pseudo 14201 Mm.331856 NM_010213 ENSMUSG00000032643 Fhl3 SLIM2 - 4|4 D2.2 four and a half LIM domains 3 protein-coding 108219 Odc-rs11 BRS-11|Odc-11 - - ornithine decarboxylase, related sequence 11 pseudo 16365 Mm.4662 NM_008392 ENSMUSG00000022126 Acod1 AI323667|CAD|Irg1 - 14 E2.3|14 51.67 cM aconitate decarboxylase 1 protein-coding 260418 Bcmd2 Bcmd-2 - - B cell maturation defect 2 unknown 102637814 Mm.390351 XR_388589 ENSMUSG00000087306 A230004M16Rik - - 11|11 A5 RIKEN cDNA A230004M16 gene ncRNA 100416387 Gm18092 - - 15|15 B3.1 ribosomal protein L5 pseudogene pseudo 105245982 XR_875438 Gm41350 - - 15 D3|15 predicted gene, 41350 ncRNA 224273 Mm.246424 NM_174848 ENSMUSG00000022723 Crybg3 5031404N19|AU022790|Gm9581 - 16|16 C1.3 beta-gamma crystallin domain containing 3 protein-coding 62483 D10Mit109 - - 10 22.53 cM DNA segment, Chr 10, Massachusetts Institute of Technology 109 unknown 102633115 Gm31022 - - 10|10 predicted gene, 31022 ncRNA 100038455 Plast1a Plast14a - - plasma plant sterol 1a unknown 103875 Mm.443719 AI853502 - - - expressed sequence AI853502 protein-coding 62916 D10Mit185 - - 10 34.16 cM DNA segment, Chr 10, Massachusetts Institute of Technology 185 unknown 13616 Mm.9478 NM_007903 ENSMUSG00000027524 Edn3 ET-3|PPET3|ls|tmgc48 - 2 H4|2 98.1 cM endothelin 3 protein-coding 100418173 Gm19054 - - 19|19 A eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 61678 D6Mit287 - - 6 52.14 cM DNA segment, Chr 6, Massachusetts Institute of Technology 287 unknown 74069 Mm.159128 NM_028740 ENSMUSG00000041536 Serpina3a - - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 3A protein-coding 75712 Mm.304763 NM_029398 ENSMUSG00000025933 Tmem14a 5730496E24Rik|C85783|PTD011 - 1|1 A4 transmembrane protein 14A protein-coding 382113 Mm.335525 NM_001037749 ENSMUSG00000070280 Slc22a14 Gm1128 - 9|9 F3 solute carrier family 22 (organic cation transporter), member 14 protein-coding 100041712 XM_006542776 ENSMUSG00000094474 LOC100041712 - - - PRAME family member 8-like protein-coding 442813 NM_001002777 9430025C20Rik - - 4|4 A1 RIKEN cDNA 9430025C20 gene unknown 107465 Exz2 Exz-2 - - adrenal X zone degeneration 2 protein-coding 360115 D17Jcs116 - - - DNA segment, Chr 17, John C. Schimenti 116 unknown 668586 Gm9256 EG668586 - 12|12 F2 signaling molecule ATTP pseudogene pseudo 75729 Mm.78946 NM_029407 ENSMUSG00000042564 Fam227a 4933432B09Rik - 15|15 E1 family with sequence similarity 227, member A protein-coding 102636135 XR_376138 Gm33289 - - 3 H1|3 predicted gene, 33289 ncRNA 100417631 Gm14999 - - X|X F1 presenilin associated, rhomboid-like pseudogene pseudo 329765 Mm.441442 D030063B19 - - 3|3 H1 uncharacterized protein D030063B19 protein-coding 105247272 XR_882263 Gm42400 - - 7 D3|7 predicted gene, 42400 ncRNA 108167493 LOC108167493 - - 7 B1 secretoglobin family 2B member 20-like pseudo 102636059 XR_381906 Gm33236 - - 12 F1|12 predicted gene, 33236 ncRNA 94178 Mm.8356 NM_053177 ENSMUSG00000004567 Mcoln1 2210015I05Rik|TRPML1|mucolipidin - 8 A1.1|8 1.92 cM mucolipin 1 protein-coding 399599 Mm.444704 NM_207268 ENSMUSG00000067872 Ccdc87 4931419P11Rik - 19|19 A coiled-coil domain containing 87 protein-coding 111428 Mtv44 Mtv-44 - - mammary tumor virus locus 44 other 11431 Mm.359831 NM_021330 ENSMUSG00000044573 Acp1 4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp - 12|12 A2 acid phosphatase 1, soluble protein-coding 105246580 XR_877864 Gm41851 - - 19 C3|19 predicted gene, 41851 ncRNA 320261 A330043J11Rik - - 3|3 RIKEN cDNA A330043J11 gene protein-coding 15443 hpc - - - hyperspiny Purkinje cell unknown 668803 Atp5l-ps2 Gm11477 - 11|11 C ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 2 pseudo 62207 D16Mit26 - - 16 52.81 cM DNA segment, Chr 16, Massachusetts Institute of Technology 26 unknown 100036220 Tmevd8 - - 15 1.8 cM Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 8 unknown 666073 Gm7917 EG666073 - 18|18 B1 predicted gene 7917 pseudo 13419 Mm.291048 NM_010061 ENSMUSG00000005980 Dnase1 AI788650|DNaseI|Dnl1 - 16 A1|16 2.37 cM deoxyribonuclease I protein-coding 100035020 Hdl37 - - 5 47.29 cM HDL level 37 unknown 381493 Mm.291525 NM_199422 ENSMUSG00000063767 S100a7a AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1 - 3|3 F1 S100 calcium binding protein A7A protein-coding 108422 Xmmv32 Env-32|Xmmv-32 - - xenotropic-MCF leukemia virus 32 other 100418138 Gm19026 - - 1|1 A1 calmodulin regulated spectrin-associated protein 1 pseudogene pseudo 105242417 XM_017313055 LOC105242417 - - 8 E2 uncharacterized LOC105242417 protein-coding 52379 D4Ertd669e - - 4 55.4 cM DNA segment, Chr 4, ERATO Doi 669, expressed unknown 104103 Mm.26553 NR_002853 ENSMUSG00000078247 Airn 2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS - 17 8.66 cM|17 A1 antisense Igf2r RNA ncRNA 14195 fhd - - - fathead unknown 17424 mneu - - - motor neuron disease unknown 594844 Mm.260515 NM_001029978 ENSMUSG00000044550 Tceal3 1100001D19Rik - X|X F1 transcription elongation factor A (SII)-like 3 protein-coding 15566 Mm.254266 NM_008315 ENSMUSG00000024798 Htr7 5-HT-X|5-HT7 - 19 C2|19 30.3 cM 5-hydroxytryptamine (serotonin) receptor 7 protein-coding 102632358 XR_389855 Gm30451 - - 4 B3|4 predicted gene, 30451 ncRNA 100416226 Gm17982 - - 7|7 A3 zinc finger protein 930 pseudogene pseudo 105244344 Gm39973 - - 2|2 predicted gene, 39973 ncRNA 77855 Mm.410760 NR_045390 ENSMUSG00000090263 D730045A05Rik - - 18|18 E2 RIKEN cDNA D730045A05 gene ncRNA 381418 Mm.295608 NM_001162934 ENSMUSG00000074872 Ctxn2 BB181834|Gm1638 - 2|2 F1 cortexin 2 protein-coding 12069 Mm.94160 NM_009749 ENSMUSG00000042750 Bex2 AL024066|Bex1 - X F1|X 57.37 cM brain expressed X-linked 2 protein-coding 108413 Xmmv17 Env-17|Xmmv-17 - - xenotropic-MCF leukemia virus 17 other 62857 D12Mit186 - - 12 17.99 cM DNA segment, Chr 12, Massachusetts Institute of Technology 186 unknown 105246032 XR_875642 Gm41394 - - 15 F1|15 predicted gene, 41394 ncRNA 56376 Mm.117709 NM_019808 ENSMUSG00000028273 Pdlim5 1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM - 3|3 H1 PDZ and LIM domain 5 protein-coding 100415972 Gm14834 - - X|X D prohibitin pseudogene pseudo 103767 Mm.34175 A530047J11Rik AI504364|AW547581 - - RIKEN cDNA A530047J11 gene protein-coding 105243993 XR_865689 Gm20471 - - 1 H2.1|1 70.57 cM predicted gene 20471 ncRNA 105404 Mm.184173 NR_027893 BB123696 - - 13 A5|13 expressed sequence BB123696 ncRNA 69888 Mm.271190 NM_001011707 ENSMUSG00000067229 Cyp2c66 2010301M18Rik - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 66 protein-coding 102640045 Gm36211 - - 3|3 predicted gene, 36211 ncRNA 102634310 XR_373222 Gm28783 - - 1 A3|1 predicted gene 28783 ncRNA 67247 Mm.177724 NM_133684 ENSMUSG00000073481 Marc2 2810484M10Rik|Mosc2|mARC1 - 1|1 H5 mitochondrial amidoxime reducing component 2 protein-coding 61375 D4Mit219 - - 4 47.21 cM DNA segment, Chr 4, Massachusetts Institute of Technology 219 unknown 53088 46O1-T7 - - - DNA segment, 46O1-T7 unknown 208213 Mm.444235 NM_175432 ENSMUSG00000034324 Tmem132c 2810482M11Rik|3230401P16|4632425D07Rik - 5|5 G1.2 transmembrane protein 132C protein-coding 692140 Igkv13-74-1 - - 6|6 C1 immunoglobulin kappa chain variable 13-74-1 pseudo 105246155 XR_876228 Gm41490 - - 16 C3.3|16 predicted gene, 41490 ncRNA 100041557 Gm15206 - - X|X F4 ubiquitin/ribosomal protein S27a fusion protein pseudogene pseudo 74678 4930456G14Rik - - 1|1 RIKEN cDNA 4930456G14 gene protein-coding 105245359 Mm.488199 NR_151504 4930470G03Rik - - 13|13 A3.1 RIKEN cDNA 4930470G03 gene ncRNA 100035715 Ba5 - - - bone area 5 unknown 320600 NM_177202 A930104D05Rik - - 2|2 E5 RIKEN cDNA A930104D05 gene unknown 76991 Mm.261471 1700061E18Rik - - 13|13 RIKEN cDNA 1700061E18 gene protein-coding 171506 Mm.21899 NM_138311 ENSMUSG00000042279 H1foo C86609|H1.8|H1fo|H1oo - 6|6 E3 H1 histone family, member O, oocyte-specific protein-coding 109241 Mm.440436 NM_029924 ENSMUSG00000036792 Mbd5 9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630 - 2|2 C1.1 methyl-CpG binding domain protein 5 protein-coding 19701 Mm.220955 NM_031192 ENSMUSG00000070645 Ren1 D19352|Ren|Ren-1|Ren-A|Ren1c|Ren1d|Rn-1|Rnr - 1 E4|1 57.91 cM renin 1 structural protein-coding 108167792 Gm46209 - - 10 A1|10 60S ribosomal protein L17 pseudogene pseudo 53382 Mm.19169 NM_016792 ENSMUSG00000024583 Txnl1 32kDa|TRP32|Txnl - 18|18 E1 thioredoxin-like 1 protein-coding 100502716 Gm17267 - - X|X 49.81 cM predicted gene, 17267 protein-coding 232906 Mm.28646 NM_172739 ENSMUSG00000058230 Arhgap35 6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP - 7|7 A2 Rho GTPase activating protein 35 protein-coding 226517 Mm.270775 NM_001005507 ENSMUSG00000042772 Smg7 9430023P16Rik|mKIAA0250 - 1|1 G3 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) protein-coding 626096 Gm6652 EG626096 - 1|1 G3 sorbitol dehydrogenase pseudogene pseudo 19853 Rnu3b-ps2 - - 2|2 E5 U3B small nuclear RNA pseudogene 2 pseudo 102634694 Gm21868 - - Y|Y predicted gene, 21868 protein-coding 111862 Iap3ra3 - - - intracisternal A-type particle, U3 region, SINE repeat a-3 other 105242848 Gm38945 - - 7|7 predicted gene, 38945 ncRNA 102466237 NR_106126 ENSMUSG00000098431 Mir7666 Gm27915|mmu-mir-7666 - 8|8 A4 microRNA 7666 ncRNA 544698 Gm5777 EG544698|Ppia-ps10_506.1 - 10|10 B4 peptidylprolyl isomerase A pseudogene 10_506.1 pseudo 381591 Mm.34340 NM_001081202 ENSMUSG00000087166 L1td1 AA546746|AB211064|D76865|ECAT11 - 4|4 C6 LINE-1 type transposase domain containing 1 protein-coding 108378 Srev1 Srev-1 - - SWR/J-RF/J ecotropic provirus 1 other 140630 Mm.215069 NM_145400 ENSMUSG00000059890 Ube4a 4732444G18Rik|9930123J21Rik|UFD2b - 9|9 A5.2 ubiquitination factor E4A protein-coding 360043 D17Jcs1 - - - DNA segment, Chr 17, John C. Schimenti 1 unknown 19284 ptr - - - pulmonary tumor resistance unknown 73681 Mm.294503 NM_028604 ENSMUSG00000019792 Trmt11 2410075D05Rik|3110045I18Rik|AW213713 - 10|10 A4 tRNA methyltransferase 11 protein-coding 100417349 Gm14869 - - X|X D upstream transcription factor 1 pseudogene pseudo 53779 D17Nds41 D0Nds41 - - DNA segment, Chr 17, Nuffield Department of Surgery 41 unknown 15891 Mm.4987 NM_008318 ENSMUSG00000029306 Ibsp BSP|BSP II|BSPII|Bsp2 - 5 E5|5 50.68 cM integrin binding sialoprotein protein-coding 71841 Mm.371643 NM_027952 ENSMUSG00000058252 Tcp11x2 1700008I05Rik|C77164|TCP11|Tcp11l3 - X|X F1 t-complex 11 family, X-linked 2 protein-coding 16774 Mm.42012 NM_010680 ENSMUSG00000024421 Lama3 Lama3B|[a]3B - 18 A1|18 6.2 cM laminin, alpha 3 protein-coding 380795 Mm.342177 Ighg3 IgG3 - 12|12 F1 Immunoglobulin heavy constant gamma 3 other 12576 Mm.2958 NM_009875 ENSMUSG00000003031 Cdkn1b AA408329|AI843786|Kip1|p27|p27Kip1 - 6 G1|6 65.77 cM cyclin-dependent kinase inhibitor 1B protein-coding 105245338 Gm40811 - - 10|10 predicted gene, 40811 protein-coding 100861746 Gm21183 - - 9 B|9 predicted gene, 21183 pseudo 71599 Mm.279070 NM_027838 ENSMUSG00000051705 Senp8 9130010J17Rik|AU020827|Den1|Nedp1|Prsc2 - 9|9 B SUMO/sentrin specific peptidase 8 protein-coding 110065 Soa - - - sucrose octaacetate aversion unknown 258041 Mm.377336 NM_001011810 ENSMUSG00000108995 Olfr485 MOR204-30P - 7|7 E3 olfactory receptor 485 protein-coding 100043630 Gm4561 - - 17|17 E1.3 programmed cell death 2 pseudogene pseudo 108167736 XR_001779488 LOC108167736 - - 1 G3 uncharacterized LOC108167736 ncRNA 320566 Mm.208417 NR_138586 ENSMUSG00000103695 A830029E22Rik - - 3|3 E3 RIKEN cDNA A830029E22 gene ncRNA 62180 D15Mit20 - - 15 10.3 cM DNA segment, Chr 15, Massachusetts Institute of Technology 20 unknown 258213 Olfr580-ps1 MOR8-4P - 7|7 E3 olfactory receptor 580, pseudogene 1 pseudo 666225 XR_881826 Pla2g4c-ps EG666225|Gm38689|Gm7989 - 7|7 A1 phospholipase A2, group IVC (cytosolic, calcium-independent), pseudogene pseudo 62988 D18Mit209 - - 18 39.79 cM DNA Segment, Chr 18, Massachusetts Institute of Technology 209 unknown 359850 DXMgc1 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 1 unknown 668950 Gm11472 - - 2|2 H3 ribosomal protein L17 pseudogene pseudo 724063 NR_029763 ENSMUSG00000065543 Mir330 Mirn330|mir-330|mmu-mir-330 - 7 A3|7 microRNA 330 ncRNA 380672 Mm.399483 Gm1559 - - 10|10 C1 predicted gene 1559 protein-coding 383172 Rps19-ps12 EG383172|Gm5220 - 16|16 C3.3 ribosomal protein S19, pseudogene 12 pseudo 100036083 Lgaq5 - - - late growth adjusted QTL 5 unknown 433423 Gm12285 - - 11|11 B3 ubiquitin C pseudogene pseudo 56753 Mm.439913 NM_020047 ENSMUSG00000051397 Tacstd2 C80403|EGP-1|GA733-1|Ly97|TROP2 - 6|6 C1 tumor-associated calcium signal transducer 2 protein-coding 105246975 XR_001784887 Gm42163 - - 5 E1|5 predicted gene, 42163 ncRNA 110753 Amh-rs1 - - - anti-Mullerian hormone, related sequence 1 protein-coding 217935 Mm.31382 NM_146039 ENSMUSG00000042050 Wdr60 D430033N04Rik - 12|12 F2 WD repeat domain 60 protein-coding 105243076 XR_870015 Gm39105 - - 7 F3|7 predicted gene, 39105 ncRNA 102637509 XR_386851 Gm34300 - - 19 D3|19 predicted gene, 34300 ncRNA 14980 Mm.439675 NM_001267808 H2-L H-2L - - histocompatibility 2, D region locus L protein-coding 619355 Mm.426744 NR_102704 Gm6083 - - 5 B1|5 developmental pluripotency associated 5 pseudogene pseudo 102639387 Gm35713 - - 8 B3.1|8 predicted gene, 35713 pseudo 78428 Mm.27358 NM_030100 ENSMUSG00000064030 Pym1 A030010B05Rik|Pym|Wibg - 10|10 D3 PYM homolog 1, exon junction complex associated factor protein-coding 61977 D8Mit323 - - 8 72.73 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 323 unknown 21928 Mm.255332 NM_009396 ENSMUSG00000021281 Tnfaip2 B94|Exoc3l3|M-sec|Tnfip2|tnfb94 - 12 F1|12 60.99 cM tumor necrosis factor, alpha-induced protein 2 protein-coding 77393 Mm.441267 9530006C21Rik - - 8|8 RIKEN cDNA 9530006C21 gene protein-coding 100316750 Mir1194 Mirn1194|mmu-mir-1194 - - microRNA 1194 ncRNA 100504320 Mm.418954 Gm20169 - - 11|11 41.39 cM predicted gene, 20169 unknown 17857 Mm.33996 NM_010846 ENSMUSG00000000386 Mx1 AI893580|Mx|Mx-1 - 16 C4|16 57.46 cM MX dynamin-like GTPase 1 protein-coding 108354 Iap1 p73 - - intracisternal A particle 1 other 114624 Mobq8 Mob8 - 9 42.65 cM multigenic obesity QTL 8 unknown 66477 Mm.29722 NM_023211 ENSMUSG00000071528 Usmg5 2010301L15Rik - 19|19 C3 upregulated during skeletal muscle growth 5 protein-coding 68449 Mm.41420 NM_144522 ENSMUSG00000042492 Tbc1d10b 1110003P22Rik|C87963 - 7|7 F3 TBC1 domain family, member 10b protein-coding 665187 Gm7535 EG665187 - 17 A3.2|17 non-SMC condensin II complex, subunit H2 pseudogene pseudo 78104 4833413E03Rik - - 17|17 A3.3 RIKEN cDNA 4833413E03 gene protein-coding 102635117 XR_383385 Gm32537 - - 14 C1|14 predicted gene, 32537 ncRNA 102640518 XR_875364 Gm36559 - - 15 D1|15 predicted gene, 36559 ncRNA 102639247 Gm27887 - - 16 B4|16 predicted gene, 27887 pseudo 382769 Cbx3-ps4 EG382769|Gm5196 - 13|13 B3 chromobox 3, pseudogene 4 pseudo 100124589 Vmn2r-ps152 - - Y|Y E vomeronasal 2, receptor, pseudogene 152 pseudo 105245979 XR_875415 Gm41347 - - 15 D3|15 predicted gene, 41347 ncRNA 102638392 XR_001779595 Gm34969 - - 1 H5|1 predicted gene, 34969 ncRNA 52348 Mm.489696 NM_033560 ENSMUSG00000031600 Vps37a 2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e - 8 A4|8 23.89 cM vacuolar protein sorting 37A protein-coding 56312 Mm.18742 NM_019738 ENSMUSG00000030717 Nupr1 2310032H04Rik|Com1|p8 - 7|7 F3 nuclear protein transcription regulator 1 protein-coding 258762 Mm.377678 NM_146766 ENSMUSG00000075161 Olfr1109 MOR172-5 - 2|2 D olfactory receptor 1109 protein-coding 13935 X83348 ESTM18 - - EST X83348 protein-coding 493001 Lvrq9 - - - liver weight QTL 9 unknown 215085 Mm.338690 NM_178675 ENSMUSG00000038602 Slc35f1 Duf6|E130016L02 - 10|10 B3 solute carrier family 35, member F1 protein-coding 16068 Mm.422756 NM_010531 ENSMUSG00000070427 Il18bp IL-18BP|Igifbp|MC54L - 7|7 E2 interleukin 18 binding protein protein-coding 192105 Stheal8 Sth8|Sth8a - 9 32.76 cM soft tissue heal 8 unknown 102639292 Gm35638 - - 12 A1.1|12 predicted gene, 35638 pseudo 102638183 XM_006537099 LOC102638183 - - 4 E2 small nuclear ribonucleoprotein F protein-coding 66380 Mm.30539 NM_025524 ENSMUSG00000069722 Krtap3-3 2310020D06Rik|KAP3.3|KRTAP3.3 - 11|11 D keratin associated protein 3-3 protein-coding 100043148 Gm4263 - - 12 B1|12 PR domain containing 14 pseudogene pseudo 667715 Gm8778 - - 6 F3|6 interferon stimulated exonuclease gene 20-like 2 pseudogene pseudo 338371 Mm.271946 NM_177394 ENSMUSG00000039850 Endov A730011L01Rik - 11|11 E2 endonuclease V protein-coding 320479 Mm.387187 NR_015582 ENSMUSG00000107385 C330024D21Rik - - 5|5 C3.1 RIKEN cDNA C330024D21 gene ncRNA 100862330 Gm21650 - - Y|Y predicted gene, 21650 protein-coding 102638891 LOC102638891 - - 4 A1 mitochondrial ribosomal protein S16 pseudogene pseudo 640046 Ighv2-9 Gm16700 - 12|12 F1 immunoglobulin heavy variable 2-9 other 74556 Mm.218634 NM_028998 ENSMUSG00000024105 Themis3 9130404H23Rik - 17|17 E1.1 thymocyte selection associated family member 3 protein-coding 100417451 Gm15132 - - X|X F3 voltage-dependent anion channel 1 pseudogene pseudo 73723 Mm.22240 NM_080559 ENSMUSG00000028843 Sh3bgrl3 1110004L05Rik|AU022188 - 4|4 D3 SH3 domain binding glutamic acid-rich protein-like 3 protein-coding 109711 Mm.253564 NM_134156 ENSMUSG00000015143 Actn1 3110023F10Rik|Actn1a - 12 C3|12 36.49 cM actinin, alpha 1 protein-coding 624936 NR_144496 Pou5f1-rs8 EG624936|Gm6539|Oct4P4|Otf3-rs8|Otf3h - X|X A5 POU domain, class 5, transcription factor 1, related sequence 8 pseudo 12361 Mm.327591 NM_009806 ENSMUSG00000031012 Cask DXPri1|DXRib1|LIN-2|Pals3|mLin-2 - X A1.1|X 8.43 cM calcium/calmodulin-dependent serine protein kinase (MAGUK family) protein-coding 237436 Mm.11982 NM_001033331 ENSMUSG00000074802 Gas2l3 8430435B07Rik|Gm240 - 10|10 C2 growth arrest-specific 2 like 3 protein-coding 17180 Mm.271796 NM_010769 ENSMUSG00000040533 Matn1 CMP|Crtm|Mat1|matrilin-1 - 4 D2.2|4 64.09 cM matrilin 1, cartilage matrix protein protein-coding 77609 Mm.159953 NM_029939 ENSMUSG00000039632 Ccdc151 AI644415|C330001K17Rik|b2b1885Clo - 9|9 A3 coiled-coil domain containing 151 protein-coding 257898 Mm.377290 NM_001011748 ENSMUSG00000044454 Olfr867 MOR143-2 - 9|9 A3 olfactory receptor 867 protein-coding 50493 Mm.210155 NM_015762 ENSMUSG00000020250 Txnrd1 TR|TR1|TrxR1 - 10|10 C1 thioredoxin reductase 1 protein-coding 387241 Mir199s Mirn199s - - microRNA 199s ncRNA 102637578 XR_376563 LOC102637578 - - 4 D1 uncharacterized LOC102637578 ncRNA 27896 D16Ium69 - - - DNA segment, Chr 16, Indiana University Medical 69 unknown 102632105 Gm21821 - - Y|Y predicted gene, 21821 protein-coding 52662 Mm.440183 NM_172631 ENSMUSG00000024544 Ldlrad4 8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik - 18 E2|18 40.14 cM low density lipoprotein receptor class A domain containing 4 protein-coding 100861618 XM_006538399 LOC100861618 - - 4 A5 chemokine (C-C motif) ligand 19, pseudogene pseudo 66065 Mm.285710 NM_025330 ENSMUSG00000030825 Hsd17b14 0610039E24Rik|Dhrs10|retSDR3 - 7|7 B3 hydroxysteroid (17-beta) dehydrogenase 14 protein-coding 676882 Gm9693 - - 15 F3|15 predicted gene 9693 unknown 60613 Mm.249977 NM_001081142 ENSMUSG00000028631 Kcnq4 - - 4|4 D2.2 potassium voltage-gated channel, subfamily Q, member 4 protein-coding 77511 9330185C12Rik - - 1|1 E2.3 RIKEN cDNA 9330185C12 gene protein-coding 100416898 Gm18308 - - 7|7 B5 vaccinia related kinase 3 pseudogene pseudo 61344 D3Mit220 - - 3 78.84 cM DNA segment, Chr 3, Massachusetts Institute of Technology 220 unknown 665831 Gm7812 EG665831 - 6|6 D1 ribosomal protein P0 pseudogene pseudo 102632251 NR_152619 Gm16143 - - 10 B4|10 32.53 cM predicted gene 16143 ncRNA 100417616 Gm18716 - - 6|6 C1 zinc finger CCCH type containing 14 pseudogene pseudo 100034878 Hbnr8 Hpnr8 - - Heligmosomoides bakeri nematode resistance 8 unknown 100502752 Mm.437961 A130015J22Rik - - 19|19 RIKEN cDNA A130015J22 gene unknown 77815 A930024O17Rik - - 11|11 RIKEN cDNA A930024O17 gene protein-coding 671357 Vmn2r-ps110 - - 14|14 C1 vomeronasal 2, receptor, pseudogene 110 pseudo 269800 Mm.108677 NM_175557 ENSMUSG00000038346 Zfp384 BB163993|C130073D16Rik|Ciz|NP|Nmp4 - 6|6 F2 zinc finger protein 384 protein-coding 102638371 XR_381014 Gm11958 - - 11 A1|11 2.94 cM predicted gene 11958 ncRNA 544717 Mm.334867 NM_001135567 ENSMUSG00000063320 1190007I07Rik - - 10|10 C1 RIKEN cDNA 1190007I07 gene protein-coding 100043315 Mm.159041 NR_015482 ENSMUSG00000100603 LOC100043315 - - 15|15 E3 uncharacterized LOC100043315 ncRNA 544809 Mm.225144 NM_001024710 Gm9796 EG544809 - 11 D|11 predicted gene 9796 unknown 66506 Mm.29070 NM_025604 ENSMUSG00000029551 Psmg3 1810042K04Rik|4930403H09Rik|AI303239 - 5|5 G2 proteasome (prosome, macropain) assembly chaperone 3 protein-coding 27831 D0Bac3 - - - DNA segment, Bulgarian Academy of Science 3 unknown 114812 Bwtq6 - - - body weight QTL 6 unknown 100504001 Gm20007 - - 16 B1|16 17.36 cM UPF0568 protein C14orf166 homolog pseudo 100039422 XR_387793 Gm2225 - - 8 C1|8 predicted gene 2225 pseudo 100115 Mm.23492 AI428898 - - 4|4 expressed sequence AI428898 unknown 100502723 Mm.383210 NM_021898 ENSMUSG00000035522 Tsga8 Halap-X|Halapx - X C1|X 38.38 cM testis specific gene A8 protein-coding 67856 Mm.38342 NM_024208 ENSMUSG00000039063 Echdc3 2310005D12Rik|AI662097 - 2|2 A1 enoyl Coenzyme A hydratase domain containing 3 protein-coding 105243722 XR_878245 Gm39535 - - X F1|X predicted gene, 39535 ncRNA 71979 Mm.140843 NM_028033 ENSMUSG00000090470 Prr23a3 2410012M07Rik - 9|9 E3.3 proline rich 23A, member 3 protein-coding 387133 NR_029817 ENSMUSG00000106493 Mir9-1 Mirn9|Mirn9-1|mir-9-1|mmu-mir-9-1 - 3|3 F1 microRNA 9-1 ncRNA 12652 Mm.4137 NM_007693 ENSMUSG00000021194 Chga ChrA|cgA - 12 E|12 51.66 cM chromogranin A protein-coding 102640116 XR_381835 Gm36263 - - 12 E|12 predicted gene, 36263 ncRNA 22094 Mm.110730 NM_009432 ENSMUSG00000027857 Tshb - - 3 F2.2|3 45.25 cM thyroid stimulating hormone, beta subunit protein-coding 245263 Mm.291161 NM_001034869 ENSMUSG00000075045 Gm4981 EG245263 - 10 B4|10 predicted gene 4981 protein-coding 102643017 LOC102643017 - - - uncharacterized LOC102643017 ncRNA 50709 Mm.170587 NM_015787 ENSMUSG00000051627 Hist1h1e H1-4|H1.4|H1e|H1f4|H1s-4|H1var2 - 13|13 A3.1 histone cluster 1, H1e protein-coding 207259 Mm.159332 NM_145356 ENSMUSG00000044646 Zbtb7c B230208J24Rik|Kr-pok|Zbtb36 - 18|18 E3 zinc finger and BTB domain containing 7C protein-coding 102639951 Gm36142 - - 6|6 predicted gene, 36142 ncRNA 100502913 Gm16244 - - 19|19 36.57 cM predicted gene 16244 ncRNA 14070 Mm.165807 NM_007978 ENSMUSG00000078317 F8a AI852759|DXUcsf1|F8a1 - X A7.3|X 37.29 cM factor 8-associated gene A protein-coding 100534327 Gm12080 - - 11|11 A3.3 predicted gene 12080 pseudo 100534377 LOC100534377 - - X|X C1 serine/arginine-rich protein specific kinase 1 pseudogene pseudo 57260 Mm.159670 NM_020490 ENSMUSG00000040432 Ltb4r2 5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2 - 14|14 C3 leukotriene B4 receptor 2 protein-coding 194597 Mm.249106 NM_001033233 ENSMUSG00000072845 Tmprss11a Gm7 - 5|5 E1 transmembrane protease, serine 11a protein-coding 258696 Mm.223131 NM_146701 ENSMUSG00000048456 Olfr1448 MOR202-5 - 19|19 A olfactory receptor 1448 protein-coding 492915 Nociq2 - - 10 70.36 cM nociceptive sensitivity inflammatory QTL 2 unknown 75637 Mm.250441 1700020L05Rik - - 2|2 RIKEN cDNA 1700020L05 gene protein-coding 102631608 XR_384486 Gm29905 - - 15 F3|15 predicted gene, 29905 ncRNA 399675 Mm.377924 NM_207272 ENSMUSG00000060256 Tdpoz4 - - 3|3 F2.1 TD and POZ domain containing 4 protein-coding 666411 Gm11585 - - 11|11 D Ppih pseudogene pseudo 665990 Gm7880 EG665990 - 6|6 B2.3 retinol dehydrogenase 11 pseudogene pseudo 73937 Mm.292326 NM_028688 ENSMUSG00000086788 1700029M20Rik 4930406E24Rik - 4|4 D3 RIKEN cDNA 1700029M20 gene ncRNA 319483 D230021J17Rik - - 3|3 RIKEN cDNA D230021J17 gene protein-coding 359882 DXMgc30 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 30 unknown 73804 Mm.247651 NM_134471 ENSMUSG00000028678 Kif2c 4930402F02Rik|ESTM5|Knsl6|MCAK|X83316 - 4 D1|4 53.42 cM kinesin family member 2C protein-coding 98176 AA200651 - - - expressed sequence AA200651 unknown 105243700 XR_878135 Gm39524 - - X C1|X predicted gene, 39524 ncRNA 234155 Mm.324008 NM_001126314 ENSMUSG00000071113 Mboat4 GOAT|Gm171 - 8|8 A4 membrane bound O-acyltransferase domain containing 4 protein-coding 259051 Mm.223432 NM_147049 ENSMUSG00000070421 Olfr658 MOR34-5 - 7|7 E3 olfactory receptor 658 protein-coding 60865 D6Mit55 - - 6 53.05 cM DNA segment, Chr 6, Massachusetts Institute of Technology 55 unknown 71804 Mm.262151 NM_027930 ENSMUSG00000019992 Mtfr2 2610016C23Rik|4933412C16Rik|Dufd1|Fam54a - 10|10 A3 mitochondrial fission regulator 2 protein-coding 105245399 Gm40861 - - 12|12 predicted gene, 40861 ncRNA 17623 Ms45 MMS45 - - minisatellites detected by probe MMS45 other 320702 Mm.447153 A730046G19Rik - - 12|12 RIKEN cDNA A730046G19 gene protein-coding 219140 Mm.149776 NM_001033272 ENSMUSG00000021990 Spata13 C79050|ESTM11|X83327|mFLJ00298 - 14 D1|14 31.77 cM spermatogenesis associated 13 protein-coding 16785 Mm.4071 NM_011029 ENSMUSG00000032518 Rpsa 67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8 - 9 F4|9 71.41 cM ribosomal protein SA protein-coding 102636088 XR_385570 Gm33257 - - 17 B1|17 predicted gene, 33257 ncRNA 58864 Mm.143802 NM_080442 ENSMUSG00000000411 Tssk3 1700014N07Rik|4930594I21Rik|Stk22c|Stk22d|Tsk-3|Tssk-3|Tssk3b - 4|4 D2.2 testis-specific serine kinase 3 protein-coding 109956 P7Ehs1 - - - protein, Chr 7, NIEHS 1 protein-coding 105244101 XR_001783252 Gm39775 - - 2 A3|2 predicted gene, 39775 ncRNA 63005 D15Mit266 D15Mit266a - 15 7.91 cM DNA Segment, Chr 15, Massachusetts Institute of Technology 266 protein-coding 100036379 Hmtb1 - - - hemostasis and thrombosis 1 unknown 68920 Mm.272397 NM_001142727 ENSMUSG00000078570 1110065P20Rik C530005M16Rik - 4|4 D2.2 RIKEN cDNA 1110065P20 gene protein-coding 15207 Mm.3516 NM_008237 ENSMUSG00000028946 Hes3 Hes-3|bHLHb43 - 4 E2|4 83.01 cM hes family bHLH transcription factor 3 protein-coding 102639900 XR_387275 Gm36102 - - 1 D|1 predicted gene, 36102 ncRNA 65116 Mm.379098 NM_022999 ENSMUSG00000007837 Prrg2 1600014G02Rik|2510041M06Rik|N4WBP1 - 7|7 B3 proline-rich Gla (G-carboxyglutamic acid) polypeptide 2 protein-coding 83704 Mm.235625 NM_031406 ENSMUSG00000037344 Slc12a9 CIP1 - 5|5 G2 solute carrier family 12 (potassium/chloride transporters), member 9 protein-coding 102640710 XM_006523138 Gm36712 - - 16 C3.3|16 predicted gene, 36712 protein-coding 14004 Mm.30133 NM_024166 ENSMUSG00000070493 Chchd2 AL033347|Etohi6 - 5|5 G1.3 coiled-coil-helix-coiled-coil-helix domain containing 2 protein-coding 105242549 Mm.404920 Gm16036 - - 5|5 79.96 cM predicted gene 16036 ncRNA 257855 Gm5034 EG257855|GA_x5J8B7W27DS-1519-2216 - 12|12 F2 olfactory receptor GA_x5J8B7W27DS-1519-2216 pseudo 436100 NM_001360951 Gm21814 6620401J10Rik - 6 G3|6 predicted gene, 21814 protein-coding 548102 LOC548102 - - - uncharacterized LOC548102 unknown 71082 Mm.395259 NR_045840 4933416M07Rik - - 8|8 A2 RIKEN cDNA 4933416M07 gene ncRNA 258172 Olfr674-ps1 MOR32-7P - 7|7 E3 olfactory receptor 674, pseudogene 1 pseudo 76648 Mm.488015 XR_001785411 1700126G02Rik - - 6|6 G3 RIKEN cDNA 1700126G02 gene ncRNA 235248 Mm.377252 NM_146503 ENSMUSG00000058856 Olfr952 MOR171-21 - 9|9 A5.1 olfactory receptor 952 protein-coding 319923 B230119K15Rik - - 12|12 RIKEN cDNA B230119K15 gene protein-coding 623798 Gm6450 EG623798 - 5|5 E2 ribosomal protein L9 pseudogene pseudo 105243186 Gm39175 - - 8|8 predicted gene, 39175 ncRNA 98397 AI574175 - - - expressed sequence AI574175 protein-coding 101187 Mm.110818 NM_181402 ENSMUSG00000037997 Parp11 5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11 - 6|6 F3 poly (ADP-ribose) polymerase family, member 11 protein-coding 102633626 Mm.398567 Gm31410 - - 9|9 predicted gene, 31410 ncRNA 21088 T(15;16)198Dn T198Dn - - reciprocal translocation, Chr 15 and 16, Davisson 198 other 100861572 NR_046306 ENSMUSG00000064417 DQ267102 - - 12 F1|12 snoRNA DQ267102 snoRNA 68239 Mm.158190 NM_212483 ENSMUSG00000053654 Krt42 2410039E07Rik|K17n|Ka22|ecat6 - 11|11 D keratin 42 protein-coding 622931 Mm.425845 Gm10021 - - 14 A1|14 predicted gene 10021 unknown 58214 Mm.117117 NM_021405 ENSMUSG00000033156 Cst10 DD72 - 2|2 G3 cystatin 10 (chondrocytes) protein-coding 102635893 LOC102635893 - - 4 D2.2 60S ribosomal protein L36a-like pseudo 66398 Mm.291716 NM_025536 ENSMUSG00000055041 Commd5 2310065H03Rik|AI854466|D15Ertd81e|Hcarg - 15 D3|15 36.28 cM COMM domain containing 5 protein-coding 28161 DYzEms17 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 17 unknown 67646 Mm.45820 NM_026291 ENSMUSG00000060491 4930522H14Rik 1700007J23Rik - 4|4 C7 RIKEN cDNA 4930522H14 gene protein-coding 70381 Mm.239412 NM_027410 ENSMUSG00000066621 Tecpr1 2210010N04Rik|mKIAA1358 - 5|5 G2 tectonin beta-propeller repeat containing 1 protein-coding 100042976 Mm.482052 NM_001167163 ENSMUSG00000095837 Gm4141 Vmn1r106 - 7 A3|7 predicted gene 4141 protein-coding 102636303 XR_379989 Gm33408 - - 9 F3|9 predicted gene, 33408 ncRNA 102632512 XR_373631 Gm30568 - - 1 G3|1 predicted gene, 30568 ncRNA 116916 D13Jde3 - - - DNA segment, Chr 13, Jan Deussing 3 unknown 67199 Mm.30184 NM_026027 ENSMUSG00000024346 Pfdn1 2700086I23Rik|AA408327|AU044714 - 18|18 B2 prefoldin 1 protein-coding 100503473 Gm15074 - - X F2|X 68.11 cM 39S ribosomal protein L15, mitochondrial-like pseudo 102636587 Mm.122911 XR_389358 Gm33609 Gm43146 - 5 E3|5 predicted gene, 33609 ncRNA 14136 fd - - - fur deficient unknown 102637235 Gm34103 - - 16|16 predicted gene, 34103 ncRNA 102722 Mm.334941 NR_126562 ENSMUSG00000086381 AV064505 - - 9 A1|9 expressed sequence AV064505 ncRNA 64454 Mm.155678 NM_023219 ENSMUSG00000020226 Slc5a4b 2010104G07Rik|SAAT1|SGLT3-b|SGLT3b|pSGLT2 - 10|10 C1 solute carrier family 5 (neutral amino acid transporters, system A), member 4b protein-coding 16284 In(4)28Rk-p In(4)28Rk|In28Rk - - inversion, Chr 4, Roderick 28, proximal other 207141 Bbaa10 Bb10 - - B.burgdorferi-associated arthritis 10 unknown 100534279 Gm21011 - - 5|5 C3.1 toll-like receptor 1 pseudogene pseudo 62632 D14Mit121 - - 14 25.36 cM DNA segment, Chr 14, Massachusetts Institute of Technology 121 unknown 68402 Mm.443321 0710001A04Rik - - 18|18 RIKEN cDNA 0710001A04 gene protein-coding 14936 Mm.275654 NM_030678 ENSMUSG00000003865 Gys1 Gys3|MGS - 7 B3|7 29.31 cM glycogen synthase 1, muscle protein-coding 61299 D3Mit102 - - 3 44.3 cM DNA segment, Chr 3, Massachusetts Institute of Technology 102 unknown 751557 NR_030526 ENSMUSG00000076010 Mir615 Mir|Mirn615|mir-615|mmu-mir-615 - 15 F3|15 microRNA 615 ncRNA 213450 Mm.300779 NM_001033252 ENSMUSG00000073006 Gm732 - - X|X D predicted gene 732 protein-coding 68193 Mm.29221 NM_024218 ENSMUSG00000098274 Rpl24 0610008L05Rik|Bst - 16 C1.1|16 33.74 cM ribosomal protein L24 protein-coding 330230 XR_377188 ENSMUSG00000093910 Zfp853 Gm792 - 5|5 G2 zinc finger protein 853 protein-coding 216395 Mm.236764 NM_153059 ENSMUSG00000034620 Tmem5 6330415D21Rik - 10|10 D2 transmembrane protein 5 protein-coding 258516 Mm.377547 NM_146523 ENSMUSG00000094535 Olfr850 MOR147-2 - 9|9 A2 olfactory receptor 850 protein-coding 541307 Mm.376459 NM_001013412 ENSMUSG00000070464 Ccl26 Ccl26l - 5|5 G2 chemokine (C-C motif) ligand 26 protein-coding 71314 Mm.158666 NR_045856 ENSMUSG00000097044 4933433F19Rik - - 8|8 A3 RIKEN cDNA 4933433F19 gene ncRNA 71607 Mm.270607 NM_027840 ENSMUSG00000031662 Snx20 9130017C17Rik - 8|8 C3 sorting nexin 20 protein-coding 104021 Hist1-2bs - - - H2B.S histone protein-coding 235086 Mm.48719 NM_001033323 ENSMUSG00000034275 Igsf9b AI414108|AI854107|Gm508|mKIAA1030 - 9|9 A4 immunoglobulin superfamily, member 9B protein-coding 78506 Mm.169893 NM_030110 ENSMUSG00000039478 Micu3 2900075B16Rik|Efha2 - 8|8 A4 mitochondrial calcium uptake family, member 3 protein-coding 71032 4933403L11Rik - - 2|2 RIKEN cDNA 4933403L11 gene protein-coding 102640070 XR_385236 Gm36226 - - 17 A1|17 predicted gene, 36226 ncRNA 75258 Mm.108821 NM_183111 ENSMUSG00000050702 4930563M21Rik Rfpl3s - 9|9 B RIKEN cDNA 4930563M21 gene protein-coding 665574 Mm.65316 NM_001198955 ENSMUSG00000102752 Gm7694 EG665574 - 1|1 H3 predicted gene 7694 protein-coding 100035674 Nilac11 - - 17 59.77 cM nicotine induced locomotor activity 11 unknown 100502803 Mm.351892 NM_001177537 ENSMUSG00000062278 Gm11562 - - 11|11 D predicted gene 11562 protein-coding 100126589 Trav5-3 - - 14|14 C2 T cell receptor alpha variable 5-3 pseudo 61587 D9Mit293 - - 9 70.16 cM DNA segment, Chr 9, Massachusetts Institute of Technology 293 unknown 667087 Vmn2r-ps21 EG667087|Gm8448 - 5 F|5 vomeronasal 2, receptor, pseudogene 21 pseudo 545238 NM_001034897 G430049J08Rik EG545238 - 18 A1|18 RIKEN cDNA G430049J08 gene other 102636078 Mm.293683 XR_389161 Gm33250 - - 11 E2|11 predicted gene, 33250 ncRNA 171266 NR_033692 V1rg10 Gm4741 - 5|5 A1 vomeronasal 1 receptor, G10 pseudo 102639404 Mm.396324 NR_136760 ENSMUSG00000097917 Gm26839 - - 12 E|12 predicted gene, 26839 ncRNA 723905 NR_029785 ENSMUSG00000065508 Mir17 Mirn17|mir-17|mmu-mir-17 - 14|14 E4 microRNA 17 ncRNA 100039600 Gm2333 - - 15|15 B3.3 ribosomal protein L17 pseudogene pseudo 105243573 Mm.411349 XR_871372 LOC105243573 - - 9 F4 uncharacterized LOC105243573 ncRNA 77612 C030038I04Rik - - 7|7 RIKEN cDNA C030038I04 gene protein-coding 100418099 Gm18999 - - 19|19 D3 DCP1 decapping enzyme homolog A pseudogene pseudo 667746 Gm8791 EG667746 - 12|12 E predicted gene 8791 pseudo 102642778 XR_868076 Gm38632 - - 4 D2.1|4 predicted gene, 38632 ncRNA 100046961 Gm17779 - - 10|10 B1 40S ribosomal protein S17-like pseudo 85194 D11Mit95 - - 11 47.48 cM DNA segment, Chr 11, Massachusetts Institute of Technology 95 unknown 100040591 Mm.443539 NM_001110227 ENSMUSG00000079436 Kcnj13 - - 1 C5|1 potassium inwardly-rectifying channel, subfamily J, member 13 protein-coding 381404 Mm.82301 NM_001114079 ENSMUSG00000054582 Pabpc1l 1810053B01Rik|Epab - 2|2 H3 poly(A) binding protein, cytoplasmic 1-like protein-coding 66433 Mm.27406 NM_181391 ENSMUSG00000042198 Chchd7 1810049H20Rik - 4|4 A1 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding 320378 Mm.440172 9630023C09Rik - - 11|11 RIKEN cDNA 9630023C09 gene protein-coding 68817 Mm.393721 NM_001017966 ENSMUSG00000078515 Ddi2 1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698 - 4|4 E1 DNA-damage inducible protein 2 protein-coding 100417926 Gm18902 - - 10|10 A1 predicted gene, 18902 pseudo 100042536 Gm3892 - - 4|4 A5 predicted gene 3892 protein-coding 331537 Mm.328336 NM_177921 ENSMUSG00000042433 Pih1h3b E230019M04Rik - X|X F1 PIH1 domain containing 3B protein-coding 667786 Gm8812 EG667786 - 1 C3|1 predicted gene 8812 pseudo 258956 Mm.223351 NM_146954 ENSMUSG00000063230 Olfr535 MOR253-7 - 7|7 F4 olfactory receptor 535 protein-coding 19012 Mm.291029 NM_008247 ENSMUSG00000021759 Plpp1 Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP - 13|13 D2.2 phospholipid phosphatase 1 protein-coding 75520 Mm.416852 NR_126471 1700024N05Rik - - 6|6 B2.1 RIKEN cDNA 1700024N05 gene ncRNA 269774 Mm.221038 NM_177762 ENSMUSG00000057230 Aak1 5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048 - 6 D1|6 37.75 cM AP2 associated kinase 1 protein-coding 102635717 Gm32983 - - 7 C|7 predicted gene, 32983 pseudo 14824 Mm.1568 NM_008175 ENSMUSG00000034708 Grn Pgrn|epithelin - 11 D|11 66.29 cM granulin protein-coding 29877 Mm.392934 NM_013886 ENSMUSG00000025104 Hdgfl3 2700022B06Rik|HRP-3|Hdgfrp3 - 7|7 D3 HDGF like 3 protein-coding 111321 Snrp2b-rs1 - - - U2 small nuclear ribonucleoprotein polypeptide 2B, related sequence 1 pseudo 100502942 Mm.441946 NM_177623 ENSMUSG00000114382 Gm4814 C920025J10|EG218444 - 13|13 C3 predicted gene 4814 ncRNA 105276 AU018877 - - - expressed sequence AU018877 protein-coding 672740 Defa-ps6 - - 8|8 A2 defensin, alpha, pseudogene 6 pseudo 67563 Mm.24201 NM_026238 ENSMUSG00000002280 Narfl 9030612I22Rik|AI504405|PRN - 17|17 A3.3 nuclear prelamin A recognition factor-like protein-coding 433483 Gm14135 - - 2|2 G3 predicted gene 14135 protein-coding 61945 D6Mit323 - - 6 37.75 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 323 unknown 102631954 XR_387379 Gm30153 - - 1 E4|1 predicted gene, 30153 ncRNA 17067 Mm.1583 NM_010741 ENSMUSG00000079018 Ly6c1 AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c - 15 D3|15 34.29 cM lymphocyte antigen 6 complex, locus C1 protein-coding 100035966 Lbn6 LBN7.1 - 7 1.91 cM long bones 6 unknown 619330 F830210D05Rik - - - RIKEN cDNA F830210D05 gene protein-coding 59045 Mm.265546 NM_021547 ENSMUSG00000018167 Stard3 Mln64|es64 - 11|11 D START domain containing 3 protein-coding 71139 4933408K01Rik - - 3|3 RIKEN cDNA 4933408K01 gene protein-coding 105244857 XR_872680 Gm40390 - - 12 A3|12 predicted gene, 40390 ncRNA 71690 Mm.38929 NM_023612 ENSMUSG00000042379 Esm1 0610042H23Rik|AV004503|ESM-1 - 13|13 D2.2 endothelial cell-specific molecule 1 protein-coding 51833 D2Uta1e - - - DNA segment, Chr 2, Uta Francke 1, expressed unknown 66897 Mm.24425 NM_025832 ENSMUSG00000022020 Naa16 1300019C06Rik|Narg1l - 14|14 D3 N(alpha)-acetyltransferase 16, NatA auxiliary subunit protein-coding 21786 Mm.4641 NM_011575 ENSMUSG00000024029 Tff3 ITF|mITF - 17 A3.3|17 15.8 cM trefoil factor 3, intestinal protein-coding 241494 Mm.490320 NM_178723 ENSMUSG00000027016 Zfp385b B830010L13Rik|C130013B13Rik|Zfp533|Znf385b - 2|2 C3 zinc finger protein 385B protein-coding 100418101 Gm19001 - - 12|12 C2 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 105246891 XR_880300 Gm42094 - - 11 E2|11 predicted gene, 42094 ncRNA 100313 AU022899 - - - expressed sequence AU022899 protein-coding 68524 Mm.28661 NM_197940 ENSMUSG00000038013 Wipf2 1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire - 11|11 D WAS/WASL interacting protein family, member 2 protein-coding 100125600 Cyp2j15-ps Gm12658 - 4|4 C5 cytochrome P450, family 2, subfamily j, member 15, pseudogene pseudo 258819 Mm.377708 NM_146822 ENSMUSG00000066262 Olfr640 MOR13-4 - 7|7 E3 olfactory receptor 640 protein-coding 76920 Mm.329132 NM_029799 ENSMUSG00000073380 Arrdc5 1700013E09Rik - 17|17 D arrestin domain containing 5 protein-coding 108168812 XR_001783533 Gm46774 - - 2 H2|2 predicted gene, 46774 ncRNA 102638336 Gm34925 - - 3|3 predicted gene, 34925 ncRNA 668030 Mm.289463 NM_001100416 Gm14432 - - 2|2 H4 predicted gene 14432 protein-coding 329047 Mm.293289 NM_001033407 ENSMUSG00000074913 Gm815 - - 19|19 C1 predicted gene 815 protein-coding 102467488 n-TCgca4 n-Tc4 - 6 B2.3|6 nuclear encoded tRNA cysteine 4 (anticodon GCA) tRNA 102634012 Gm31700 - - 9|9 predicted gene, 31700 ncRNA 105244305 XR_866760 Gm39940 - - 2 F2|2 predicted gene, 39940 ncRNA 100042746 Gm12033 - - 11|11 A3.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 99011 Mm.31192 NM_145145 ENSMUSG00000039254 Pomt1 AI505244 - 2|2 B protein-O-mannosyltransferase 1 protein-coding 105247283 XR_882321 Gm28597 - - Y B|Y predicted gene 28597 ncRNA 104750 Mm.288697 AI035719 - - - expressed sequence AI035719 protein-coding 68738 Mm.7044 NM_080575 ENSMUSG00000027452 Acss1 1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2 - 2|2 G3 acyl-CoA synthetase short-chain family member 1 protein-coding 96950 C76450 - - - expressed sequence C76450 protein-coding 108167899 XR_001780207 Gm46281 - - 11 B1.3|11 predicted gene, 46281 ncRNA 12189 Mm.244975 NM_009764 ENSMUSG00000017146 Brca1 - - 11 65.18 cM|11 D breast cancer 1, early onset protein-coding 259145 Mm.376637 NM_001011529 ENSMUSG00000111567 Olfr1251 GA_x5J8B7TT7VM-20-924|MOR231-15P - 2|2 E1 olfactory receptor 1251 protein-coding 102636099 XR_376280 Gm33266 - - 3 H4|3 predicted gene, 33266 ncRNA 76781 Mm.139146 NM_176917 ENSMUSG00000055660 Mettl4 2410198H06Rik|A730091E08Rik|AV296509|HsT661 - 17|17 E5 methyltransferase like 4 protein-coding 102637951 XR_386723 Gm34636 - - 19 C3|19 predicted gene, 34636 ncRNA 102467381 n-TSgct8 n-Ts22 - 13 A3.1|13 nuclear encoded tRNA serine 8 (anticodon GCT) tRNA 102467309 n-TGccc4 n-Tg8 - 6 D1|6 nuclear encoded tRNA glycine 4 (anticodon CCC) tRNA 102637936 XR_385142 Gm34625 - - 17 A1|17 predicted gene, 34625 ncRNA 238680 Mm.390590 NM_001081129 ENSMUSG00000033063 Cntnap3 - - 13|13 B3 contactin associated protein-like 3 protein-coding 94275 Mm.27578 NM_019791 ENSMUSG00000025151 Maged1 2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163 - X C3|X 41.56 cM melanoma antigen, family D, 1 protein-coding 100047044 Mm.440058 LOC100047044 - - 3|3 uncharacterized LOC100047044 protein-coding 665882 Gm15497 EG665882 - 5 G2|5 predicted gene 15497 pseudo 110120538 LOC110120538 - - - VISTA enhancer mm1485 biological-region 27798 D2Dcr5 - - - DNA segment, Chr 2, Derry C. Roopenian 5 unknown 116912 Mm.347499 Sox16 - - - SRY (sex determining region Y)-box 16 protein-coding 258355 Mm.377452 NM_146358 ENSMUSG00000073914 Olfr677 MOR32-11 - 7|7 E3 olfactory receptor 677 protein-coding 100417888 Gm18883 - - 13|13 D2.2 heterogeneous nuclear ribonucleoprotein R pseudogene pseudo 100416288 Gm18019 - - 16|16 C1.3 ribosomal protein 10 pseudogene pseudo 432910 Trav13-3 Gm13897 - 14|14 C2 T cell receptor alpha variable 13-3 other 100416349 Gm18061 Gm18051 - 7|7 A3 sepiapterin reductase pseudogene pseudo 100036110 Scgq1 Scg-1 - 1 67.71 cM spontaneous crescentic glomerulonephritis QTL 1 unknown 73668 Mm.250868 NM_001047604 ENSMUSG00000034848 Ttc21b 2410066K11Rik|Thm1|aln|mKIAA1992 - 2|2 C1.3 tetratricopeptide repeat domain 21B protein-coding 108167667 XR_001779247 Gm46122 - - 9 E2|9 predicted gene, 46122 ncRNA 230793 Mm.31816 NM_146155 ENSMUSG00000037692 Ahdc1 D030015G18Rik - 4|4 D2.3 AT hook, DNA binding motif, containing 1 protein-coding 105245283 Gm40759 - - 10|10 predicted gene, 40759 ncRNA 100417271 Gm18495 - - 16|16 C2 crumbs homolog 1 pseudogene pseudo 100035510 Chldq1 - - - cholesterol and HDL QTL 1 unknown 620292 Mm.391030 NM_001081653 ENSMUSG00000038048 Cntnap5c Caspr5-3|EG620292|Gm325 - 17|17 D contactin associated protein-like 5C protein-coding 102641396 XR_879109 Gm38555 - - 8 C5|8 predicted gene, 38555 ncRNA 102467366 n-TPagg5 n-Tp5 - 3 C|3 nuclear encoded tRNA proline 5 (anticodon AGG) tRNA 101056250 Gm16026 - - 1|1 43.46 cM predicted pseudogene 16026 protein-coding 61450 D6Mit134 - - 6 59.32 cM DNA segment, Chr 6, Massachusetts Institute of Technology 134 unknown 218581 Mm.32318 NM_178683 ENSMUSG00000021697 Depdc1b 9830132O03|AW260467|XTP1 - 13|13 D2.1 DEP domain containing 1B protein-coding 102636162 XR_386842 Gm33306 - - 19 D2|19 predicted gene, 33306 ncRNA 258465 Mm.377518 NM_146473 ENSMUSG00000063386 Olfr1387 MOR256-22 - 11|11 B1.2 olfactory receptor 1387 protein-coding 16950 Mm.380433 NM_013586 ENSMUSG00000000693 Loxl3 Lor2|Loxl2 - 6 C3|6 35.94 cM lysyl oxidase-like 3 protein-coding 104439 Cfp2 - - 5|5 cerebellar folial pattern 2 protein-coding 16798 Mm.34083 NM_010690 ENSMUSG00000040021 Lats1 AW208599 - 10|10 A1 large tumor suppressor protein-coding 102467637 n-TRacg3 n-Tr3 - 3 A2|3 nuclear encoded tRNA arginine 3 (anticodon ACG) tRNA 19861 NR_002843 ENSMUSG00000104896 Rnu3b4 1810064A23Rik|Rnu3b-4 - 11 C|11 52.11 cM U3B small nuclear RNA 4 snRNA 75166 Mm.410811 NR_040614 ENSMUSG00000084798 4930533B01Rik - - 2|2 E4 RIKEN cDNA 4930533B01 gene ncRNA 109279968 LOC109279968 Mm595 - - VISTA enhancers mm595 and mm919 biological-region 434404 Rps6-ps3 EG434404|Gm5618 - 9|9 A5.3 ribosomal protein S6, pseudogene 3 pseudo 102639970 XR_386755 Gm28578 - - 19 C3|19 predicted gene 28578 ncRNA 105245894 Gm41275 - - 15|15 predicted gene, 41275 ncRNA 105242877 XR_881895 Gm38965 - - 7 A3|7 predicted gene, 38965 ncRNA 77374 9430082L08Rik - - X|X RIKEN cDNA 9430082L08 gene protein-coding 104458 Mm.284906 NM_025936 ENSMUSG00000018848 Rars 2610011N19Rik|2610037E21Rik|AL033339|AW985894 - 11|11 A4 arginyl-tRNA synthetase protein-coding 68009 Mm.327348 NM_183268 ENSMUSG00000095066 Defa20 2010016F14Rik|Defcr20 - 8|8 A2 defensin, alpha, 20 protein-coding 239283 Mm.138520 NM_001001490 ENSMUSG00000044819 Oxgr1 Cysltr3|Gm299|Gpr80|Gpr99|P2Y15 - 14|14 E4 oxoglutarate (alpha-ketoglutarate) receptor 1 protein-coding 102633807 XR_382469 Gm31542 - - 13 B1|13 predicted gene, 31542 ncRNA 100039740 Gm10260 - - 13|13 D1 ribosomal protein S18 pseudogene pseudo 109280130 LOC109280130 Mm1402 - - VISTA enhancer mm1402 biological-region 105245323 XR_872169 Gm40798 - - 10 D3|10 predicted gene, 40798 ncRNA 102639547 Mm.436761 XR_001784243 Gm11832 - - 4 A1|4 5.16 cM predicted gene 11832 ncRNA 100503585 Gm10059 - - 5|5 B2 ribosomal protein S29 pseudogene pseudo 383705 Gm13592 - - 2|2 C1.3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 78881 B230219J11Rik - - 11|11 RIKEN cDNA B230219J11 gene protein-coding 61416 D5Mit188 Tgfbm1 - 5 57.51 cM DNA segment, Chr 5, Massachusetts Institute of Technology 188 protein-coding 100048901 Mm.6904 G630022F23Rik - - 5 B|5 RIKEN cDNA G630022F23 gene unknown 102640105 XR_375353 Gm36254 - - 2 H3|2 predicted gene, 36254 ncRNA 100045778 NM_001220499 ENSMUSG00000110404 Rnf223 9930005F22Rik - 4|4 E2 ring finger 223 protein-coding 100534365 LOC100534365 - - 17|17 C armadillo repeat containing, X-linked 3 pseudogene pseudo 320226 Mm.180032 NM_029117 ENSMUSG00000052407 Ccdc171 4930418J05Rik|4930473A06Rik|A330015D16Rik - 4|4 C3 coiled-coil domain containing 171 protein-coding 14809 Mm.2879 NM_008168 ENSMUSG00000003378 Grik5 GluK5|GluRgamma2|KA2 - 7 A3|7 13.73 cM glutamate receptor, ionotropic, kainate 5 (gamma 2) protein-coding 320995 Mm.109190 NM_177306 ENSMUSG00000019900 Rfx6 4930572O07Rik|Rfxdc1 - 10|10 B3 regulatory factor X, 6 protein-coding 100042008 XR_140792 ENSMUSG00000107176 Gm9794 - - 6 C1|6 30.67 cM predicted pseudogene 9794 pseudo 69798 Mm.229265 NR_038153 ENSMUSG00000100680 1810044D09Rik - - 6|6 D1 RIKEN cDNA 1810044D09 gene ncRNA 20709 Mm.474264 NM_183197 ENSMUSG00000038327 Serpinb9f BC052216|NK21|NK21L1|Spi13|ovalbumin - 13 A3.3|13 13.86 cM serine (or cysteine) peptidase inhibitor, clade B, member 9f protein-coding 73757 Mm.427271 4833421G17Rik - - 1|1 RIKEN cDNA 4833421G17 gene protein-coding 620095 Vmn2r-ps137 EG620095 - Y|Y A1 vomeronasal 2, receptor, pseudogene 137 pseudo 330354 XR_001785283 Gm20560 D430001N20|Gm44031 - 6|6 C1 predicted gene, 20560 unknown 434095 Gm5582 EG434095 - 6|6 F3 predicted gene 5582 pseudo 102640193 Gm36320 - - 12|12 predicted gene, 36320 ncRNA 108978 Mm.396152 NM_175393 ENSMUSG00000096197 4930555G01Rik - - 14|14 A1 RIKEN cDNA 4930555G01 gene protein-coding 102640152 XR_381342 Gm36287 - - 12 A1.3|12 predicted gene, 36287 ncRNA 102638265 XR_381698 Gm34868 - - 12 C3|12 predicted gene, 34868 ncRNA 108168634 XM_017318842 LOC108168634 - - Y C2 Y-linked testis-specific protein 1-like protein-coding 100310787 Mm.84424 1700016D18Rik - - 8 A4|8 RIKEN cDNA 1700016D18 gene unknown 102631773 Gm29466 - - Y|Y predicted gene 29466 protein-coding 111363 Spt - - - salivary protein cluster other 105246346 Gm41646 - - 17|17 predicted gene, 41646 ncRNA 15964 Mm.377087 NM_008333 ENSMUSG00000100549 Ifna11 IFN-[a]11 - 4 C4|4 42.03 cM interferon alpha 11 protein-coding 669751 XR_001781605 ENSMUSG00000115119 Gm17756 - - 15|15 A1 predicted gene, 17756 unknown 353170 Mm.270186 NM_178935 ENSMUSG00000038344 Txlng 4932441K18Rik|Fiat|Lrp - X|X F4 taxilin gamma protein-coding 71198 Mm.83981 NM_027715 ENSMUSG00000043415 Otud1 4933428L19Rik - 2|2 A3 OTU domain containing 1 protein-coding 230936 Mm.25582 NM_172705 ENSMUSG00000047777 Phf13 BC029632|Phf5|SPOC1 - 4|4 E2 PHD finger protein 13 protein-coding 258147 Mm.377358 NM_001011848 ENSMUSG00000096773 Olfr675 MOR32-9P - 7|7 E3 olfactory receptor 675 protein-coding 665539 Vmn2r-ps43 EG665539 - 7|7 A1 vomeronasal 2, receptor, pseudogene 43 pseudo 105247529 Mm.416880 LOC105247529 - - - uncharacterized LOC105247529 ncRNA 667459 Gm8643 EG667459 - 3 E3|3 predicted gene 8643 pseudo 102638743 XR_380881 Gm35235 - - 10 D2|10 predicted gene, 35235 ncRNA 105243257 XR_879106 Gm39226 - - 8 C5|8 predicted gene, 39226 ncRNA 75814 Mm.444705 NR_045981 4930467D21Rik 4930448L09Rik|BB013444 - 5 E3|5 RIKEN cDNA 4930467D21 gene ncRNA 59083 Mm.28461 NM_021564 ENSMUSG00000022871 Fetub 2310011O17Rik|AI255764|D17980|Gugu - 16 B1|16 13.76 cM fetuin beta protein-coding 319271 Mm.446600 A130072N09Rik - - 16|16 RIKEN cDNA A130072N09 gene protein-coding 237211 Mm.336317 NM_175027 ENSMUSG00000047757 Fancb BC022692 - X|X F5 Fanconi anemia, complementation group B protein-coding 70963 Mm.488107 4931402H11Rik - - 3|3 RIKEN cDNA 4931402H11 gene unknown 101055749 Mm.300769 NR_126535 ENSMUSG00000059972 LOC101055749 - - X C1 Gm5941 pseudogene pseudo 30957 Mm.43081 NM_013931 ENSMUSG00000024163 Mapk8ip3 BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066 - 17 A3.3|17 12.53 cM mitogen-activated protein kinase 8 interacting protein 3 protein-coding 99433 AW822080 AW822085 - - expressed sequence AW822080 protein-coding 13856 Mm.349116 NM_007942 ENSMUSG00000029711 Epo - - 5 G2|5 76.5 cM erythropoietin protein-coding 76580 Mm.235738 NM_145124 ENSMUSG00000029060 Mib2 2210008I11Rik|Zzank1|skd - 4|4 E2 mindbomb E3 ubiquitin protein ligase 2 protein-coding 56258 Mm.315909 NM_019868 ENSMUSG00000045427 Hnrnph2 DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2 - X E3|X 56.2 cM heterogeneous nuclear ribonucleoprotein H2 protein-coding 666684 Gm8237 EG666684 - 14|14 A1 predicted gene 8237 protein-coding 12969 Mm.275362 NM_027010 ENSMUSG00000025945 Crygf 3110001K11Rik|Cryg-2|DGcry-2|Len-2 - 1 C3|1 33.31 cM crystallin, gamma F protein-coding 100504701 Mm.400420 NR_040301 ENSMUSG00000108072 Gm20362 - - 6 C3|6 34.88 cM predicted gene, 20362 ncRNA 102640338 Mm.343883 XR_874615 Gm26782 - - 14 C1|14 predicted gene, 26782 ncRNA 68032 Mm.220942 NM_026519 ENSMUSG00000027131 Emc4 2610318K02Rik|Tmem85 - 2|2 E3 ER membrane protein complex subunit 4 protein-coding 667278 XR_389850 Mup-ps16 EG667278|Gm8552 - 4|4 B3 major urinary protein, pseudogene 16 protein-coding 100416370 Gm18076 - - 14|14 E4 ribosomal protein S2 pseudogene pseudo 108167463 XR_001778301 Gm46003 - - 7 F3|7 predicted gene, 46003 ncRNA 12866 Mm.152627 NM_009945 ENSMUSG00000032330 Cox7a2 COX7AL|Cox7a3|CoxVIIa-L - 9 E1|9 43.82 cM cytochrome c oxidase subunit VIIa 2 protein-coding 62952 D11Mit336 - - 11 73.75 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 336 unknown 111768 Iapls3-9 - - - intracisternal A particle, lymphocyte specific 3-9 other 100101482 Hrdg1 Hrgd1 - - hyperoxia-induced retinal degeneration 1 unknown 105244239 XR_866563 Gm39882 - - 2 E1|2 predicted gene, 39882 ncRNA 105246560 XR_877811 Gm41834 - - 19 C1|19 predicted gene, 41834 ncRNA 69592 Mm.389652 NM_027128 ENSMUSG00000009580 Odam 2310011G06Rik|APIN - 5 E1|5 43.56 cM odontogenic, ameloblast asssociated protein-coding 100312556 Vmn1r-ps127 Gm11326 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 127 pseudo 628176 Gm6852 EG628176 - 14|14 C3 R3H domain containing 2 pseudogene pseudo 387134 NR_029734 ENSMUSG00000092995 Mir16-1 Mirn16|Mirn16-1|miR-16|mir-16-1 - 14|14 D1 microRNA 16-1 ncRNA 676915 Gm9697 - - 16 B1|16 predicted gene 9697 pseudo 73610 Mm.490466 NM_001243067 ENSMUSG00000096795 Zfp433 1700123A16Rik - 10|10 C1 zinc finger protein 433 protein-coding 20648 Mm.1541 NM_009228 ENSMUSG00000027488 Snta1 AW228934|Snt1 - 2 H1|2 76.52 cM syntrophin, acidic 1 protein-coding 61570 DXMit186 - - X 76.75 cM DNA segment, Chr X, Massachusetts Institute of Technology 186 unknown 492996 Lvrq1 - - - liver weight QTL 1 unknown 74333 Mm.329744 NR_015503 ENSMUSG00000086213 A330040F15Rik - - 19|19 A RIKEN cDNA A330040F15 gene ncRNA 105245242 XR_871894 Gm40721 - - 10 C1|10 predicted gene, 40721 ncRNA 100504380 Gm13321 - - 2 A1|2 9.32 cM 60S ribosomal protein L32-like pseudo 100415993 LOC100415993 - - X|X B actin, beta pseudogene pseudo 628515 Gm6888 - - 13|13 B3 predicted gene 6888 pseudo 53762 D17Leh12 D0Tu12|D17Tu12 - - DNA segment, Chr 17, Lehrach 12 unknown 100035387 Azdm1 - - - Alzheimer's disease modifier 1 unknown 546951 Rpl23a-ps10 EG546951|Gm6002 - 7|7 B1 ribosomal protein L23A, pseudogene 10 pseudo 78279 5330421C15Rik - - 10|10 RIKEN cDNA 5330421C15 gene protein-coding 16087 Igk-V12/13 IGKV12-e|Igk-V12|Igk-V13 - - immunoglobulin kappa chain variable 12/13 other 102633058 Gm30975 - - 11|11 predicted gene, 30975 ncRNA 72248 Mm.40673 1700014B07Rik - - 2|2 A1 RIKEN cDNA 1700014B07 gene unknown 100504669 Gm20343 - - 18|18 43.53 cM predicted gene, 20343 protein-coding 108346 Emv4 Emv-4 - - endogenous ecotropic MuLV 4 other 105244500 XR_867468 Gm40097 - - 3 F2.1|3 predicted gene, 40097 ncRNA 13429 Mm.44736 NM_010065 ENSMUSG00000026825 Dnm1 AI838169|Dnm|Ftfl|mKIAA4093 - 2 B|2 22.09 cM dynamin 1 protein-coding 100628602 NR_039595 ENSMUSG00000092696 Mir5133 mir-5133|mmu-mir-5133|mu-mir-5133 - 9 B|9 33.59 cM microRNA 5133 ncRNA 637627 Gm7214 - - 13|13 A4 predicted gene 7214 pseudo 102634790 XR_386428 Gm32291 - - 18 E4|18 predicted gene, 32291 ncRNA 105245880 XR_875018 Gm41263 - - 15 A1|15 predicted gene, 41263 ncRNA 114714 Mm.37376 NM_053269 ENSMUSG00000007646 Rad51c R51H3|Rad51l2 - 11 C|11 52.08 cM RAD51 paralog C protein-coding 27773 38B16R - - - DNA segment, 38B16R (Research Genetics) unknown 62405 D16Mit181 - - 16 2.9 cM DNA segment, Chr 16, Massachusetts Institute of Technology 181 unknown 105243360 Mm.378337 XR_870581 Gm39307 - - 9 A3|9 predicted gene, 39307 ncRNA 105243438 XR_870870 Gm39363 - - 9 C|9 predicted gene, 39363 ncRNA 102635529 XR_384279 C130064B19Rik - - 15|15 E1 RIKEN cDNA C130064B19 gene ncRNA 110913 Pou5f1-rs10 - - - POU domain, class 5, transcription factor 1, related sequence 10 protein-coding 384244 Mm.485002 NM_001195128 ENSMUSG00000094504 Gm5294 EG384244 - 5|5 G2 predicted gene 5294 protein-coding 258534 Mm.271446 NM_146541 ENSMUSG00000049737 Olfr1361 MOR256-12 - 13|13 A3.1 olfactory receptor 1361 protein-coding 242517 Mm.377261 NM_206870 ENSMUSG00000096011 Ifna15 Gm12597|Ifnaa|MuIFN-alpha-A - 4|4 C4 interferon alpha 15 protein-coding 83691 Mm.289625 NM_031402 ENSMUSG00000025776 Crispld1 Cocoacrisp|Lcrisp1 - 1|1 A3 cysteine-rich secretory protein LCCL domain containing 1 protein-coding 384808 Gm5345 EG384808 - 8 A4|8 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 234515 Mm.324468 NM_001024617 ENSMUSG00000037940 Inpp4b E130107I17Rik - 8 C2|8 39.02 cM inositol polyphosphate-4-phosphatase, type II protein-coding 107556 Msbp1 - - - minisatellite binding protein 1 protein-coding 61193 D1Mit110 - - 1 75.1 cM DNA segment, Chr 1, Massachusetts Institute of Technology 110 unknown 98157 C81364 - - - expressed sequence C81364 protein-coding 108168721 XR_001783087 LOC108168721 - - 4 B3 uncharacterized LOC108168721 ncRNA 72269 Mm.46182 NM_028176 ENSMUSG00000028755 Cda 2210401N16Rik - 4|4 D3 cytidine deaminase protein-coding 108458 Ms46 MMS46 - - minisatellites detected by probe MMS46 other 102635288 XR_381792 Gm32666 - - 12 D2|12 predicted gene, 32666 ncRNA 632883 Gm14989 - - X|X predicted gene 14989 protein-coding 71281 Mm.158650 NM_001081197 ENSMUSG00000055547 Apobec4 4933431M11Rik - 1|1 G3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) protein-coding 11477 Mm.689 NM_007394 ENSMUSG00000026836 Acvr1 ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L - 2|2 C1.1 activin A receptor, type 1 protein-coding 404743 Iglv3 EG404743|Gm5413|Igl-V3 - 16|16 A3 immunoglobulin lambda variable 3 other 108455 Xmv56 Xmv-56 - - xenotropic murine leukemia virus 56 other 14788 Mm.2514 NM_013533 ENSMUSG00000038390 Gpr162 A-2|BC031437|Grca - 6 F2|6 59.17 cM G protein-coupled receptor 162 protein-coding 14320 Fth-ps1 Fth-rs1 - - ferritin heavy chain, pseudogene 1 pseudo 100312472 Vmn1r-ps7 - - 6 A1|6 1.64 cM vomeronasal 1 receptor, pseudogene 7 pseudo 101736 AU015263 - - - expressed sequence AU015263 protein-coding 27356 Mm.306511 NM_013754 ENSMUSG00000050957 Insl6 RIF1 - 19|19 C1 insulin-like 6 protein-coding 102631938 XR_375369 Gm30143 - - 2 H4|2 predicted gene, 30143 ncRNA 100503754 Mm.393992 XR_001780378 ENSMUSG00000085434 Gm11725 - - 11 E2|11 82.96 cM predicted gene 11725 ncRNA 66514 Mm.272847 NM_025610 ENSMUSG00000024654 Asrgl1 2410004D18Rik|ALP|ALP1|AU040643|AW060375 - 19|19 A asparaginase like 1 protein-coding 108167908 XR_001780247 Gm46285 - - 11 B4|11 predicted gene, 46285 ncRNA 62669 D15Mit136 - - 15 12.53 cM DNA segment, Chr 15, Massachusetts Institute of Technology 136 unknown 100042997 Gm4157 - - 7 A1|7 predicted gene 4157 pseudo 101055802 Mm.221769 LOC101055802 - - - uncharacterized LOC101055802 protein-coding 258454 Mm.330373 NM_146462 ENSMUSG00000064084 Olfr1202 MOR232-7 - 2|2 E1 olfactory receptor 1202 protein-coding 767815 Mm.188065 NR_040356 ENSMUSG00000084938 BB557941 - - 2 C1.1|2 expressed sequence BB557941 ncRNA 24088 Mm.87596 NM_011905 ENSMUSG00000027995 Tlr2 Ly105 - 3|3 E3 toll-like receptor 2 protein-coding 102640753 Gm36746 - - 17|17 predicted gene, 36746 ncRNA 102633269 Gm10087 - - 7 E3|7 57.7 cM predicted gene 10087 pseudo 102640825 XR_374757 ENSMUSG00000085025 Gm13715 - - 2 D|2 49.6 cM predicted gene 13715 ncRNA 105244967 XR_870310 Gm40485 - - 8 A3|8 predicted gene, 40485 ncRNA 60909 D8Mit85 - - - DNA segment, Chr 8, Massachusetts Institute of Technology 85 unknown 100042689 Gm20936 - - Y|Y predicted gene, 20936 protein-coding 109280158 LOC109280158 TB11|TBEL6 - - Tbx1 upstream enhancer region biological-region 18164 Mm.5142 NM_008730 ENSMUSG00000025582 Nptx1 D11Bwg1004e|Np1 - 11 E2|11 83.95 cM neuronal pentraxin 1 protein-coding 11416 Mm.135619 NM_015728 ENSMUSG00000027822 Slc33a1 AI315656|AI788741|Acatn|D630022N01Rik - 3|3 E1 solute carrier family 33 (acetyl-CoA transporter), member 1 protein-coding 100418154 Gm19040 - - 6|6 E3 calmodulin regulated spectrin-associated protein 1 pseudogene pseudo 11944 Mm.12821 NM_018731 ENSMUSG00000005553 Atp4a - - 7 B1|7 19.2 cM ATPase, H+/K+ exchanging, gastric, alpha polypeptide protein-coding 102635940 XR_384414 Gm33149 - - 15 F1|15 predicted gene, 33149 ncRNA 85162 D4Mit324 - - 4 35.4 cM DNA segment, Chr 4, Massachusetts Institute of Technology 324 unknown 20931 Mm.389260 NM_013678 ENSMUSG00000014873 Surf2 Surf-2 - 2 A3|2 19.1 cM surfeit gene 2 protein-coding 237009 Mm.302216 NM_207241 ENSMUSG00000050435 Ube2dnl1 Ube2dnl - X E1|X ubiquitin-conjugating enzyme E2D N-terminal like 1 protein-coding 23925 Mm.19958 NM_032540 ENSMUSG00000029866 Kel CD238|Ece3 - 6 B2.1|6 19.86 cM Kell blood group protein-coding 76516 Mm.28485 NR_131042 ENSMUSG00000087165 2010001A14Rik - - 11|11 B1.3 RIKEN cDNA 2010001A14 gene ncRNA 102639118 XR_386911 Gm35506 - - X A1.2|X predicted gene, 35506 ncRNA 57756 Mm.87325 NM_021318 ENSMUSG00000028259 Fhl5 1700027G07Rik|Act - 4|4 A3 four and a half LIM domains 5 protein-coding 100019 Mm.24627 NM_133874 ENSMUSG00000058006 Mdn1 4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135 - 4 A5|4 14.3 cM midasin AAA ATPase 1 protein-coding 117013 Adaz1 - - 4 45.71 cM anti-dsDNA antibody production in NZM 1 unknown 100861966 Mm.443264 NM_001270667 ENSMUSG00000100249 Btbd35f23 Gm21950|Mgclh - X A1.1|X BTB domain containing 35, family member 23 protein-coding 61516 D8Mit138 - - 8 54.51 cM DNA segment, Chr 8, Massachusetts Institute of Technology 138 unknown 102467332 n-TLcaa4 n-Tl9 - 13 A2|13 nuclear encoded tRNA leucine 4 (anticodon CAA) tRNA 102632275 XR_880496 Gm30396 - - 5 E5|5 predicted gene, 30396 ncRNA 102631783 XR_389546 Gm30032 - - 5 F|5 predicted gene, 30032 ncRNA 108168221 Gm27825 - - 15 E1|15 predicted gene, 27825 pseudo 105243729 XR_878279 Gm39540 - - X F3|X predicted gene, 39540 ncRNA 105244285 XR_866707 Gm39924 - - 2 F1|2 predicted gene, 39924 ncRNA 111634 Scrd1 - - - smallest common region of deletion 1 other 668331 Gm9109 EG668331 - X|X D transcriptional adaptor 3 pseudogene pseudo 107510 Sdr2 Sdr-2 - - serine dehydratase regulator 2 protein-coding 69601 Mm.29629 NM_001001602 ENSMUSG00000026883 Dab2ip 2310011D08Rik|AI480459|Aip1|mKIAA1743 - 2|2 B disabled 2 interacting protein protein-coding 329650 Mm.240059 NM_177855 ENSMUSG00000056476 Med12l A130035F20|A630079M02|AU044581|TRALPUSH - 3|3 D mediator complex subunit 12-like protein-coding 114143 Mm.207052 NM_033617 ENSMUSG00000033379 Atp6v0b 2310024H13Rik|Atp6f|VMA16 - 4|4 D2.1 ATPase, H+ transporting, lysosomal V0 subunit B protein-coding 60776 D3Mit12 - - 3 43.71 cM DNA segment, Chr 3, Massachusetts Institute of Technology 12 unknown 102637971 XR_379162 Gm34651 - - 9 A2|9 predicted gene, 34651 ncRNA 640543 Mm.478785 NM_001160424 ENSMUSG00000079103 Tgm7 TGMZ|TGz - 2|2 E5 transglutaminase 7 protein-coding 108168435 Gm46671 - - X A3.1|X predicted gene, 46671 pseudo 666855 Gm8326 EG666855 - 1|1 C1.1 heat shock protein 8 pseudogene pseudo 333193 Mm.34885 NM_183321 ENSMUSG00000036864 Proser3 - - 7|7 B1 proline and serine rich 3 protein-coding 12876 Mm.31395 NM_013494 ENSMUSG00000037852 Cpe CPH|Cph-1|Cph1|NF-alpha1|R74677|fat - 8 B3.1|8 32.3 cM carboxypeptidase E protein-coding 102638094 XR_374586 Gm34739 - - 2 C1.3|2 predicted gene, 34739 ncRNA 13867 Mm.373043 NM_010153 ENSMUSG00000018166 Erbb3 C76256|Erbb-3|Erbb3r|Her3 - 10 D3|10 77.1 cM erb-b2 receptor tyrosine kinase 3 protein-coding 102638463 XR_378891 Gm35021 Gm45381 - 8 A4|8 predicted gene, 35021 ncRNA 100416990 Gm18350 - - 7|7 B4 MAS-related GPR, member X1 pseudogene pseudo 217011 Mm.29176 NM_145431 ENSMUSG00000020692 Nle1 AL022765|BC018399|Nle|l11Jus1|l11Jus4 - 11|11 C notchless homolog 1 protein-coding 108168653 XM_017318864 LOC108168653 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 102636649 Gm28392 - - 1|1 predicted gene 28392 pseudo 102639816 XR_375350 Gm36038 - - 2 H3|2 predicted gene, 36038 ncRNA 105243410 XR_870773 Gm39340 - - 9 A5.3|9 predicted gene, 39340 ncRNA 246081 Mm.221026 NM_139221 ENSMUSG00000045337 Defb11 BD-11|Defb8 - 8|8 A2 defensin beta 11 protein-coding 668508 Gm9212 EG668508 - 14|14 D3 tubulin, alpha 1C pseudogene pseudo 225742 Mm.365178 NM_013666 ENSMUSG00000025425 St8sia5 ST8SiaV|Siat8e - 18|18 E3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 protein-coding 100038741 3010085J16Rik - - - RIKEN cDNA 3010085J16 gene protein-coding 105428 Mm.206990 NM_172379 ENSMUSG00000039599 Fam149b AA536717|AI428773|Fam149b1|mKIAA0974 - 14|14 A3 family with sequence similarity 149, member B protein-coding 100037258 Mm.12616 NM_008929 ENSMUSG00000022136 Dnajc3 AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK - 14|14 E4 DnaJ heat shock protein family (Hsp40) member C3 protein-coding 665234 Gm7546 EG665234 - 7|7 C predicted gene 7546 protein-coding 432868 Gm5463 - - 14 D1|14 predicted gene 5463 protein-coding 16071 Mm.333124 Igkc Igk-C - 6 C1|6 32.04 cM immunoglobulin kappa constant other 100504619 Prox1os Gm17566 - 1|1 96.07 cM prospero homeobox 1, opposite strand ncRNA 73844 Mm.38830 NM_028664 ENSMUSG00000044835 Ankrd45 4933409K03Rik - 1|1 H2.1 ankyrin repeat domain 45 protein-coding 100045653 Mm.363175 NR_027377 Gm17769 - - 10|10 C1 predicted gene, 17769 ncRNA 544817 Mm.259113 NM_133715 ENSMUSG00000034255 Arhgap27 2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20 - 11|11 E1 Rho GTPase activating protein 27 protein-coding 102632831 Mm.247296 XR_001780900 Gm29590 - - 13 A3.3|13 predicted gene 29590 ncRNA 635513 LOC635513 - - - Ly49p/d protein-coding 272381 Mm.44173 NM_198250 ENSMUSG00000047085 Lrrc4b A830007M12|Lrig4 - 7|7 B3 leucine rich repeat containing 4B protein-coding 100040439 Eif1-ps1 Gm10713 - 14|14 B eukaryotic translation initiation factor 1, pseudogene 1 pseudo 387564 Mm.346825 NM_001003952 ENSMUSG00000062833 Sval3 - - 6|6 B2.1 seminal vesicle antigen-like 3 protein-coding 114581 Arvm1 - - 4 24.66 cM autoimmune renal vasculitis 1 unknown 102633684 Gm31448 - - 12|12 predicted gene, 31448 ncRNA 102632714 Gm38449 - - 6|6 predicted gene, 38449 ncRNA 108168387 Gm46629 - - 18 E3|18 transcription and mRNA export factor ENY2 pseudogene pseudo 21692 Tel-rs3 - - - telomere, related sequence 3 protein-coding 14545 Mm.18218 NM_010267 ENSMUSG00000025777 Gdap1 - - 1|1 A3 ganglioside-induced differentiation-associated-protein 1 protein-coding 22598 Mm.30370 NM_011730 ENSMUSG00000021612 Slc6a18 B0AT3|D630001K16Rik|Xt2|Xtrp2 - 13 C1|13 40.13 cM solute carrier family 6 (neurotransmitter transporter), member 18 protein-coding 100416831 Gm12179 - - 11|11 B1.2 zinc finger protein 622 pseudogene pseudo 102634079 Mm.123091 XR_388654 ENSMUSG00000085531 Slc36a3os Gm12233 - 11 B1.3|11 32.13 cM solute carrier family 36 (proton/amino acid symporter), member 3, opposite strand ncRNA 14362 Mm.246003 NM_021457 ENSMUSG00000044674 Fzd1 AW227548|FZ-1|Fz1 - 5 A1|5 2.61 cM frizzled class receptor 1 protein-coding 100049566 Mm.474985 Gm10545 - - 18|18 predicted gene 10545 unknown 13314 Del(5)47H Del47H - - deletion, Chr 5, Harwell 47 other 100035611 Manln11 - - 11 33.39 cM mandible length 11 unknown 102638457 XR_377951 Gm35017 - - 6 E1|6 predicted gene, 35017 ncRNA 380686 Mm.425666 NM_029861 ENSMUSG00000044629 Cnrip1 1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32 - 11|11 A2 cannabinoid receptor interacting protein 1 protein-coding 17771 Mm.209941 NM_010841 ENSMUSG00000024905 Tesmin Mtl5 - 19|19 A testis expressed metallothionein like protein-coding 62933 D11Mit307 - - 11 24.2 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 307 unknown 78192 Mm.243861 4930540I17Rik - - 15|15 RIKEN cDNA 4930540I17 gene protein-coding 51811 Mm.3115 NM_016751 ENSMUSG00000014542 Clec4f Clecsf13|D18063|KUCR_MOUSE|Kclr - 6|6 C3 C-type lectin domain family 4, member f protein-coding 434246 Mm.389924 NM_001079932 ENSMUSG00000042828 Trim72 BC067209|MG53 - 7|7 F3 tripartite motif-containing 72 protein-coding 100035096 Manln1 - - 1 38.55 cM mandible length 1 unknown 100034905 Spha1 Spa1 - - sperm head anomaly 1 unknown 387229 NR_029535 ENSMUSG00000065530 Mir99a Mirn99a|mir-99a|mmu-mir-99a - 16|16 C3.1 microRNA 99a ncRNA 102640385 Hspe1-ps3 10kDa|Cpn10-rs4 - 5|5 A3 heat shock protein 1 (chaperonin 10), pseudogene 3 pseudo 110892 Sui1-rs2 - - - suppressor of initiator codon mutations, related sequence 2 protein-coding 102641064 LOC102641064 - - - 60S ribosomal protein L24-like pseudo 399611 A230091C14Rik - - - RIKEN cDNA A230091C14 gene protein-coding 108304 Mmv6 Mmv-6 - - MCF endogenous virus 6 other 102238433 Mm.41467 NR_104353 ENSMUSG00000033852 Gm28042 Jmjd7-pla2g4b - 2 E5|2 predicted gene, 28042 ncRNA 56598 240c11Sp6 - - - DNA segment, 240c11Sp6 unknown 108167600 Gm46078 - - 1 D|1 predicted gene, 46078 pseudo 399623 5930433N17Rik - - - RIKEN cDNA 5930433N17 gene protein-coding 103948 NR_052007 ENSMUSG00000099021 Rn7s1 Gm22405|Rn7s-1 - 12 C2|12 7S RNA 1 scRNA 104046 Mom6 Mom2 - - modifier of Min 6 protein-coding 666748 Gm8270 EG666748 - 10|10 C1 predicted gene 8270 pseudo 27477 11T - - - DNA segment, 11T unknown 85116 D19Mit42 - - 19 6.39 cM DNA segment, Chr 19, Massachusetts Institute of Technology 42 unknown 112165 Faq4 - - - fluctuating asymmetry QTL 4 unknown 102636841 XR_001782939 LOC102636841 - - - uncharacterized LOC102636841 ncRNA 61803 D2Mit396 - - 2 60.68 cM DNA segment, Chr 2, Massachusetts Institute of Technology 396 unknown 226844 Mm.134053 NM_198025 ENSMUSG00000066595 Flvcr1 9630055N22Rik|FLVCR|Mfsd7b - 1|1 H6 feline leukemia virus subgroup C cellular receptor 1 protein-coding 243302 Gm4963 EG243302 - 5|5 G2 predicted gene 4963 pseudo 105247157 XR_881385 Gm42308 - - 4 C3|4 predicted gene, 42308 ncRNA 102637269 XM_006496391 LOC102637269 - - 1 C2 protein transport protein Sec61 subunit gamma pseudogene 2 pseudo 319945 Mm.258142 NM_177041 ENSMUSG00000042642 Flad1 A930017E24Rik|Pp591 - 3|3 F1 flavin adenine dinucleotide synthetase 1 protein-coding 105244424 XR_867163 Gm40033 - - 2 H4|2 predicted gene, 40033 ncRNA 24136 Mm.440702 NM_015753 ENSMUSG00000026872 Zeb2 9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b - 2|2 B zinc finger E-box binding homeobox 2 protein-coding 105246305 Mm.124963 XR_876920 A730049N16Rik Gm548 - 17|17 E1.3 RIKEN cDNA A730049N16 gene ncRNA 27375 Mm.27984 NM_013769 ENSMUSG00000034917 Tjp3 - - 10|10 C1 tight junction protein 3 protein-coding 53301 380N16T7 - - - DNA segment, 380N16T7 (Roswell Park) unknown 105247094 XR_001784522 Gm42254 - - 4 A1|4 predicted gene, 42254 ncRNA 99679 Mm.482512 AI595385 - - - expressed sequence AI595385 protein-coding 102638889 XR_001782197 Gm35343 - - 17 A2|17 predicted gene, 35343 ncRNA 17470 Mm.245851 NM_010818 ENSMUSG00000022661 Cd200 Mox2|OX2 - 16 B5|16 29.53 cM CD200 antigen protein-coding 83429 Mm.259852 NM_031251 ENSMUSG00000005949 Ctns AI195360|AW049661 - 11|11 B4 cystinosis, nephropathic protein-coding 102635079 XR_378847 Gm32505 - - 8 A2|8 predicted gene, 32505 ncRNA 140741 Mm.290693 NM_199058 ENSMUSG00000046922 Gpr6 AI852874|Gm233 - 10 B1|10 22.08 cM G protein-coupled receptor 6 protein-coding 668620 Mm.388871 NM_001034893 ENSMUSG00000064194 Zfp936 EG435970|EG668620|Gm9272|I1C0022H11Rik - 7|7 B3 zinc finger protein 936 protein-coding 16521 Mm.69472 NM_010605 ENSMUSG00000032034 Kcnj5 GIRK4|Kir3.4 - 9 A4|9 17.65 cM potassium inwardly-rectifying channel, subfamily J, member 5 protein-coding 61970 D8Mit307 - - 8 43.89 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 307 unknown 102465205 NR_105810 ENSMUSG00000098336 Mir6388 Gm27925|mmu-mir-6388 - 12|12 F2 microRNA 6388 ncRNA 56382 Mm.25306 NM_019773 ENSMUSG00000079316 Rab9 2410064E05Rik|AI195561|Rab9a|Sid6061p - X|X F5 RAB9, member RAS oncogene family protein-coding 112366 Sle2 - - 4 39.4 cM systemic lupus erythmatosus susceptibility 2 unknown 105246046 NR_155446 LOC105246046 - - 15 F3 uncharacterized LOC105246046 ncRNA 320207 Mm.244960 NM_177320 ENSMUSG00000020901 Pik3r5 AV230647|F730038I15Rik|Foap2|p101 - 11|11 B3 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 100539 AA571391 - - - expressed sequence AA571391 unknown 69608 Mm.29293 NM_027135 ENSMUSG00000039234 Sec24d 2310020L09Rik|Gm1349 - 3|3 G1 Sec24 related gene family, member D (S. cerevisiae) protein-coding 67939 Mm.251087 NM_026465 ENSMUSG00000032673 Prorsd1 2010316F05Rik|Ncrna00117|Prdxdd1 - 11|11 A3.3 prolyl-tRNA synthetase domain containing 1 protein-coding 106407 Mm.476915 NM_145932 ENSMUSG00000035699 Slc51a AV001382|AW261577|D630035O19Rik|OSTalpha|Osta - 16|16 B3 solute carrier family 51, alpha subunit protein-coding 100416668 Gm18179 - - 1|1 A5 olfactory receptor 1135 pseudogene pseudo 66531 Mm.4011 NM_026844 ENSMUSG00000014633 Cmc2 1110046L09Rik|2310061C15Rik|DC13 - 8|8 E1 COX assembly mitochondrial protein 2 protein-coding 100035949 Cq5 Chol11 - - cholesterol QTL 5 unknown 102640407 XR_387284 Gm36472 - - 1 D|1 predicted gene, 36472 ncRNA 20185 Mm.271814 NM_011308 ENSMUSG00000018501 Ncor1 5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047 - 11|11 B2 nuclear receptor co-repressor 1 protein-coding 100504319 NM_001195765 Gm13611 - - 2|2 B 60S ribosomal protein L36 pseudogene pseudo 70686 Mm.491182 NM_130447 ENSMUSG00000030203 Dusp16 3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm - 6 G1|6 65.77 cM dual specificity phosphatase 16 protein-coding 723792 Mm.385493 NR_003202 Pinc - - 1|1 C3 pregnancy induced noncoding RNA ncRNA 61661 D7Mit260 - - 7 45.65 cM DNA segment, Chr 7, Massachusetts Institute of Technology 260 unknown 15223 Mm.378938 NM_008240 ENSMUSG00000034227 Foxj1 FKHL-13|HFH-4|Hfh4 - 11 E2|11 81.16 cM forkhead box J1 protein-coding 102632755 XR_387391 Gm30744 - - 1 E4|1 predicted gene, 30744 ncRNA 75872 4930568E02Rik - - 17|17 RIKEN cDNA 4930568E02 gene protein-coding 236598 NR_003279 Rn28s1 28s - - 28S ribosomal RNA rRNA 22262 Mm.10865 NM_009474 ENSMUSG00000028186 Uox AI663847 - 3 H2|3 72.09 cM urate oxidase protein-coding 109280151 LOC109280151 Mm1361 - - VISTA enhancer mm1361 biological-region 105262 Mm.25933 AU015723 - - - expressed sequence AU015723 unknown 100035481 Mofp3 Mof3 - - mesenteric and omental fat pad weight 3 unknown 244484 Mm.95281 NM_028220 ENSMUSG00000039375 Wdr17 3010002I12Rik|B230207L18Rik - 8|8 B1.3 WD repeat domain 17 protein-coding 100416046 Gm17891 - - 17|17 E1.1 periphilin 1 pseudogene pseudo 100043112 Gm4238 - - 19|19 D3 ribosomal protein S25 pseudogene pseudo 102635498 Mm.134992 XR_379375 Gm32819 2010007H06Rik - 9 A5.3|9 predicted gene, 32819 ncRNA 66164 Mm.334789 NM_025391 ENSMUSG00000031917 Nip7 1110017C15Rik|6330509M23Rik|AA408773|AA410017|PEachy - 8|8 D3 NIP7, nucleolar pre-rRNA processing protein protein-coding 329371 Mm.247664 NR_040524 ENSMUSG00000085008 Dbhos 6430548G04|Gm13399 - 2|2 A3 dopamine beta hydroxylase, opposite strand ncRNA 27623 D11Moh5 - - 11 59.01 cM DNA segment, Chr 11, KL Mohlke 5 unknown 67320 Mm.335431 NM_026090 ENSMUSG00000041009 Iqcf4 1700042N06Rik|mtIQ1 - 9|9 F1 IQ motif containing F4 protein-coding 105244521 Gm40115 - - 3|3 predicted gene, 40115 ncRNA 100040201 Mm.436873 NM_001199334 ENSMUSG00000068075 Gm10229 - - 16|16 C3.3 predicted gene 10229 protein-coding 66829 Mm.399197 Lrrc75aos2 4930443B20Rik|Fam211aos2 - 11|11 leucine rich repeat containing 75A, opposite strand 2 protein-coding 100034860 Pgia28 - - 11 15.63 cM proteoglycan induced arthritis 28 unknown 27273 Mm.235547 NM_013743 ENSMUSG00000019577 Pdk4 AV005916 - 6 A1|6 2.06 cM pyruvate dehydrogenase kinase, isoenzyme 4 protein-coding 105244085 Mm.484422 XR_865977 Gm9875 - - 2|2 A1 predicted gene 9875 ncRNA 105246918 XR_880431 Gm42114 - - 5 E2|5 predicted gene, 42114 ncRNA 68897 Mm.327216 NM_026866 ENSMUSG00000030768 Disp1 1190008H24Rik|DispA - 1 H5|1 dispatched RND transporter family member 1 protein-coding 102465583 NR_105931 ENSMUSG00000093202 Mir3547 Gm22410|mmu-mir-3547 - 17|17 A3.3 microRNA 3547 ncRNA 723967 NR_029545 ENSMUSG00000065424 Mir9-2 Mirn9-2|mir-9-2|mmu-mir-9-2 - 13|13 C3 microRNA 9-2 ncRNA 331474 Mm.23297 NM_183318 ENSMUSG00000049191 Rtl5 6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001 - X|X D retrotransposon Gag like 5 protein-coding 27276 Mm.491216 NM_013746 ENSMUSG00000030701 Plekhb1 AI315628|PHR1|Phret1|evt-1 - 7|7 E2 pleckstrin homology domain containing, family B (evectins) member 1 protein-coding 70435 Mm.250193 NM_198411 ENSMUSG00000037679 Inf2 2610204M08Rik|AA589465|AW125550|EG629699 - 12|12 F1 inverted formin, FH2 and WH2 domain containing protein-coding 102637658 XR_387872 Gm34412 - - 8 C3|8 predicted gene, 34412 ncRNA 17339 Mm.31625 NM_008600 ENSMUSG00000025389 Mip Aqp0|Cat|Cts|Hfi|Lop|MIP26|MP26|Svl|shrivelled - 10 D3|10 76.49 cM major intrinsic protein of lens fiber protein-coding 97761 Mm.245894 NM_197943 ENSMUSG00000038351 Sgsm2 D630003G22Rik|R74628|Rutbc1|mKIAA0397 - 11|11 B5 small G protein signaling modulator 2 protein-coding 233878 Mm.283926 NM_144926 ENSMUSG00000030683 Sez6l2 AI835913|AW121566|BSRP-A|Psk1 - 7|7 F3 seizure related 6 homolog like 2 protein-coding 52783 D15Bwg0213e - - - DNA segment, Chr 15, Brigham & Women's Genetics 0213 expressed unknown 102634839 XR_378148 Gm26666 - - 6 G3|6 predicted gene, 26666 ncRNA 106369 Mm.237941 NM_023249 ENSMUSG00000022773 Ypel1 0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1 - 16|16 A3 yippee like 1 protein-coding 102638844 XR_001781718 Gm35312 - - 15 D1|15 predicted gene, 35312 ncRNA 100038941 Mm.388852 NM_001100616 ENSMUSG00000072049 Vmn2r121 EG625699 - X|X E3 vomeronasal 2, receptor 121 protein-coding 61239 D1Mit277 - - 1 12.75 cM DNA segment, Chr 1, Massachusetts Institute of Technology 277 unknown 259093 Mm.377837 NM_147089 ENSMUSG00000073963 Olfr572 MOR10-2 - 7|7 E3 olfactory receptor 572 protein-coding 320304 D130011O08Rik - - 17|17 RIKEN cDNA D130011O08 gene protein-coding 54124 Mm.3049 NM_016904 ENSMUSG00000028044 Cks1b 2410005G18Rik|2610005D03Rik|AA407784|Cks1|sid1334 - 3|3 F1 CDC28 protein kinase 1b protein-coding 17738 TrnN - - - tRNA tRNA 109464 Pas5b - - 11 59.82 cM pulmonary adenoma susceptibility 5b unknown 223631 Mm.235880 NM_146058 ENSMUSG00000047728 BC025446 Ly6g2 - 15|15 D3 cDNA sequence BC025446 protein-coding 61620 D8Mit277 - - 8 72.15 cM DNA segment, Chr 8, Massachusetts Institute of Technology 277 unknown 665250 Gm11401 - - 11|11 A1 predicted gene 11401 pseudo 18029 Mm.426936 NM_008688 ENSMUSG00000055053 Nfic 1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C - 10 C1|10 39.72 cM nuclear factor I/C protein-coding 27967 Mm.30136 NM_138585 ENSMUSG00000052488 Cherp 5730408I11Rik|D8Wsu96e|DAN16|Scaf6 - 8 B3.3|8 35.08 cM calcium homeostasis endoplasmic reticulum protein protein-coding 235611 Mm.53862 NM_172775 ENSMUSG00000053646 Plxnb1 2900002G15Rik|AU042020|mKIAA0407 - 9|9 F2 plexin B1 protein-coding 102634964 XR_381651 Gm24474 - - 12 C2|12 predicted gene, 24474 ncRNA 67360 Mm.59218 NR_040675 ENSMUSG00000098230 1700095B10Rik - - 5|5 F RIKEN cDNA 1700095B10 gene ncRNA 666624 Gm8197 EG666624 - 1|1 H5 GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus pseudogene pseudo 235606 Mm.219639 NM_146226 ENSMUSG00000032590 Apeh - - 9 F1|9 59.07 cM acylpeptide hydrolase protein-coding 102638615 Gm35138 - - 4|4 predicted gene, 35138 ncRNA 100035570 Phl1 - - - progressive hearing loss 1 unknown 16573 Mm.223744 NM_008448 ENSMUSG00000006740 Kif5b AL022807|Khc|Khcs|Kns1|Ukhc - 18 A1|18 4.46 cM kinesin family member 5B protein-coding 102636128 XR_390463 Gm33286 - - 4 A5|4 predicted gene, 33286 ncRNA 74665 Mm.133570 NM_029044 ENSMUSG00000056598 Drc3 4930449E07Rik|Lrrc48|m6Bei - 11|11 B2 dynein regulatory complex subunit 3 protein-coding 69198 2610024L02Rik - - 6|6 RIKEN cDNA 2610024L02 gene protein-coding 102634130 Gm12446 - - 4|4 24.63 cM predicted gene 12446 ncRNA 103079 Mm.441355 AA408251 - - - expressed sequence AA408251 protein-coding 100126820 Gm17793 - - 11|11 A1 peptidase M20 domain containing 2 pseudogene pseudo 56595 184a16Sp6 - - - DNA segment, 184a16Sp6 unknown 56560 D6Ott32 - - - DNA segment, Chr 6, Animal Research Centre, Ottawa 32 unknown 667644 Gm11605 - - 1|1 C2 PRELI domain containing 1 pseudogene pseudo 666269 Gm12118 - - 11|11 A4 high mobility group box 2 pseudogene pseudo 215493 Mm.300900 NM_001009819 ENSMUSG00000028794 A3galt2 Gm433|iGb3|iGb3S - 4|4 D2.2 alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase) protein-coding 258492 Mm.271411 NM_146499 ENSMUSG00000110171 Olfr484 MOR204-16 - 7|7 E3 olfactory receptor 484 protein-coding 100049554 Idd6.1 Idd6a - - insulin dependent diabetes susceptibility 6.1 unknown 100035301 Cmv4 - - 6 62.56 cM cytomegalovirus resistance 4 unknown 12020 Mm.2530 NM_007524 ENSMUSG00000049691 Nkx3-2 Bapx1|NKX3.2|Nkx-3.2 - 5 B3|5 22.58 cM NK3 homeobox 2 protein-coding 105242706 XR_869220 Gm38850 - - 6 D1|6 predicted gene, 38850 ncRNA 546213 Mm.305097 Igkv4-53 Gm1420|Gm1526|IgVkkh4|kh4 - 6|6 C1 immunoglobulin kappa variable 4-53 other 85130 D8Mit129 - - 8 30.82 cM DNA segment, Chr 8, Massachusetts Institute of Technology 129 unknown 73241 3110080O07Rik - - 3|3 RIKEN cDNA 3110080O07 gene protein-coding 102636425 XR_387312 Gm33490 - - 1 E2.3|1 predicted gene, 33490 ncRNA 100628589 NR_039578 ENSMUSG00000093292 Mir5118 mmu-mir-5118|mu-mir-5118 - 16 C1.1|16 33.65 cM microRNA 5118 ncRNA 19746 Mm.195461 NM_011270 ENSMUSG00000028825 Rhd Rh|Rhced|Rhl1 - 4 D3|4 67.13 cM Rh blood group, D antigen protein-coding 116752 Drb2 - - 5 50.64 cM dopamine receptor binding 2 unknown 238663 Mm.444776 NM_177711 ENSMUSG00000043986 Spata31d1d 4932411G14Rik|Fam75d1d - 13|13 B2 spermatogenesis associated 31 subfamily D, member 1D protein-coding 105245838 Gm41227 - - 14|14 predicted gene, 41227 ncRNA 320554 Mm.249065 NM_177190 ENSMUSG00000027175 Tcp11l1 C130096D04Rik - 2|2 E2 t-complex 11 like 1 protein-coding 21387 Mm.275336 NM_011536 ENSMUSG00000000094 Tbx4 3930401C23 - 11 C|11 51.42 cM T-box 4 protein-coding 73949 Mm.55687 NR_001583 ENSMUSG00000107956 Speer9-ps1 4930415A14Rik|SPEER-9|Speer9-ps - 7|7 A1 spermatogenesis associated glutamate (E)-rich protein 9, pseudogene 1 pseudo 105242830 Gm38932 - - 11|11 predicted gene, 38932 ncRNA 105246767 Mm.463167 Gm42006 - - 5|5 predicted gene, 42006 ncRNA 381903 Mm.279683 NM_199035 ENSMUSG00000035704 Alg8 AI447372|Gm1089 - 7|7 E1 asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase) protein-coding 381884 Mm.490944 NM_001324535 ENSMUSG00000094152 Slc6a16 Gm1084 - 7|7 B3 solute carrier family 6, member 16 protein-coding 666459 Gm8118 EG666459 - 16|16 B1 ribosomal protein SA pseudogene pseudo 100046282 Selenok-ps8 Gm20563 - 13 B3|13 32.74 cM selenoprotein K, pseudogene 8 pseudo 666668 Gm8225 EG666668 - 17|17 A3.3 ribosomal protein S2 pseudogene pseudo 106334 Mm.353036 AU021880 - - - expressed sequence AU021880 unknown 665643 Gm13386 - - 2|2 A3 high mobility group box 3 pseudogene pseudo 111523 Pmv45 Pmv-45 - - polytropic murine leukemia virus 45 other 105244829 XM_017321851 Gm40365 - - 6 B2.3|6 predicted gene, 40365 protein-coding 546077 Gm5910 EG546077 - 8|8 C2 pescadillo homolog pseudogene pseudo 231332 Mm.373616 NM_001010832 Pea15b - - 5|5 C3.3 phosphoprotein enriched in astrocytes 15B pseudo 108168887 XR_001783934 Gm46817 - - 3 F2.2|3 predicted gene, 46817 ncRNA 102634637 Gm32174 - - 18|18 predicted gene, 32174 ncRNA 381033 Mm.263108 NR_126064 ENSMUSG00000116270 Gm1600 Gm1776 - 16|16 A1 predicted gene 1600 ncRNA 102632071 XR_376955 Gm30241 - - 5 C1|5 predicted gene, 30241 ncRNA 102639895 Gm28870 - - Y|Y predicted gene 28870 protein-coding 99977 AA408705 - - - expressed sequence AA408705 protein-coding 108168478 XM_017318676 Gm14853 - - X D|X 47.34 cM predicted gene 14853 protein-coding 111567 Xmv30 Xmv-30 - - xenotropic murine leukemia virus 30 other 52701 D10Ertd709e - - 10 58.25 cM DNA segment, Chr 10, ERATO Doi 709, expressed protein-coding 16609 Klk1b18-ps Klk-ps7|mGK-18 - 7 B3|7 28.51 cM kallikrein 1-related peptidase b18, pseudogene pseudo 14710 Mm.46299 NM_023121 ENSMUSG00000038811 Gngt2 AV096488 - 11 D|11 59.01 cM guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 protein-coding 102638896 Gm35348 - - 18|18 predicted gene, 35348 protein-coding 100042417 XM_006542542 ENSMUSG00000094746 Gm20916 - - Y|Y D predicted gene, 20916 protein-coding 632764 Mm.459532 5730471H19Rik - - 2|2 RIKEN cDNA 5730471H19 gene protein-coding 666330 Gm8051 EG666330 - 8|8 A3 predicted gene 8051 pseudo 384482 Gm5316 EG384482 - 6|6 F2 predicted gene 5316 protein-coding 93853 D7Jor1 - - - DNA segment, Chr 7, Barbara Jordan 1 unknown 667504 Mm.480252 NM_001166752 ENSMUSG00000095383 Vmn1r152 EG667504|Gm8673 - 7|7 A3 vomeronasal 1 receptor 152 protein-coding 100503569 Mm.391822 Gm16754 - - 9|9 7.74 cM predicted gene, 16754 ncRNA 102638232 Gm34841 - - Y|Y tRNA methyltransferase 112 homolog pseudo 433384 Mm.185140 NM_001007587 Gm5533 EG433384 - 1 H5|1 predicted gene 5533 unknown 68185 Mm.228995 NM_183270 ENSMUSG00000044881 Coa4 5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2 - 7|7 E2 cytochrome c oxidase assembly factor 4 protein-coding 408190 Mm.376205 NM_001012704 ENSMUSG00000067704 Wfdc13 Wfdc13l1 - 2 H3|2 WAP four-disulfide core domain 13 protein-coding 72108 Mm.246875 NM_028102 ENSMUSG00000061313 Ddhd2 2010305K11Rik|SAMWD1|mKIAA0725 - 8|8 A2 DDHD domain containing 2 protein-coding 28123 D17Wsu164e - - - DNA segment, Chr 17, Wayne State University 164, expressed unknown 100034764 Cdcs9 - - 4 75.67 cM cytokine deficiency colitis susceptibility 9 unknown 320234 Mm.247767 NM_177111 ENSMUSG00000046753 Ccdc66 E230015L20Rik - 14|14 A3 coiled-coil domain containing 66 protein-coding 639769 Mm.484043 NR_033581 ENSMUSG00000090306 Adh6-ps1 1300002P07Rik|Adh5ps|Gm7277 - 3|3 G3 alcohol dehydrogenase 6 (class V), pseudogene 1 pseudo 116891 Mm.28131 NM_033562 ENSMUSG00000018442 Derl2 CGI-101|Derlin-2|F-lana|Flana - 11 B4|11 43.21 cM Der1-like domain family, member 2 protein-coding 19336 Mm.220923 NM_009000 ENSMUSG00000034789 Rab24 6530406O07Rik - 13 B1|13 29.8 cM RAB24, member RAS oncogene family protein-coding 106201 Mm.448494 AI428301 AW742434|AW743209 - - expressed sequence AI428301 protein-coding 668477 Gm9192 EG668477 - 14|14 D2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 319821 9330185G11Rik - - 19|19 RIKEN cDNA 9330185G11 gene protein-coding 100526494 NR_037264 ENSMUSG00000105365 Mir669a-10 mmu-mir-669a-10 - 2 A1|2 8.22 cM microRNA 669a-10 ncRNA 105246300 XR_876890 Gm41604 - - 17 D|17 predicted gene, 41604 ncRNA 105246440 XR_877411 Gm41730 - - 18 D2|18 predicted gene, 41730 ncRNA 100035483 Rfpw4 Rf4 - - retroperitoneal fat pad weight 4 unknown 27587 D5Buc31 381P13.T7 - - DNA segment, Chr 5, Bucan 31 unknown 108167602 Gm46079 - - 1 E2.3|1 predicted gene, 46079 pseudo 14308 Mm.249525 NM_008045 ENSMUSG00000027120 Fshb FSH|FSH-B|FSH-beta|Fshbeta - 2 E3|2 56.02 cM follicle stimulating hormone beta protein-coding 74905 Mm.399357 NR_126085 ENSMUSG00000112155 4930477N07Rik - - 10|10 D2 RIKEN cDNA 4930477N07 gene ncRNA 58546 D13Die45 - - 13 53.23 cM DNA segment, Chr 13, Dietrich 45 unknown 108168426 XR_001782714 Gm46664 - - 19 C2|19 predicted gene, 46664 ncRNA 102634217 XR_386811 LOC102634217 - - 19 D2 uncharacterized LOC102634217 ncRNA 105245001 XR_870691 Gm40516 - - 9 A5.2|9 predicted gene, 40516 ncRNA 108888 Mm.241152 NM_179203 ENSMUSG00000029036 Atad3a 2400004H09Rik|Atad3|Tob3|mKIAA1273 - 4|4 E2 ATPase family, AAA domain containing 3A protein-coding 102640928 XR_388864 Gm36875 - - 11 B5|11 predicted gene, 36875 ncRNA 673380 Gm9597 - - 14|14 B predicted gene 9597 pseudo 60757 D2Mit52 - - 2 87.22 cM DNA segment, Chr 2, Massachusetts Institute of Technology 52 unknown 17145 Mm.377100 NM_010759 ENSMUSG00000062162 Mageb1 MAGE-Xp|Mage-b1|Mage-rs1|Magel1|Smage1|dam1 - X C2|X 40.59 cM melanoma antigen, family B, 1 protein-coding 102639346 XR_383728 Gm35680 - - 14 E2.3|14 predicted gene, 35680 ncRNA 16590 Mm.247073 NM_021099 ENSMUSG00000005672 Kit Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT - 5 C3.3|5 39.55 cM KIT proto-oncogene receptor tyrosine kinase protein-coding 622152 Gm6291 EG622152 - 18|18 A1 predicted gene 6291 pseudo 60731 D10Mit1 - - 10 4.25 cM DNA segment, Chr 10, Massachusetts Institute of Technology 1 unknown 110723 Cnbpl1 - - - cellular nucleic acid binding protein-like 1 protein-coding 102638734 Gm17163 - - 9|9 72.65 cM predicted gene 17163 ncRNA 75448 Mm.439818 NR_126461 ENSMUSG00000086433 Rsf1os1 1700006D18Rik - 7|7 E1 remodeling and spacing factor 1, opposite strand 1 ncRNA 102639658 XR_380307 Gm35917 - - 10 B3|10 predicted gene, 35917 ncRNA 102637852 XR_382529 Gm34558 - - 13 B1|13 predicted gene, 34558 ncRNA 105246541 XR_877746 Gm41815 - - 19 B|19 predicted gene, 41815 ncRNA 105246929 XR_880456 Gm42124 - - 5 E3|5 predicted gene, 42124 ncRNA 105245611 Gm41041 - - 13 D1|13 predicted gene, 41041 pseudo 21836 Thse - - - t haplotype specific elements other 57390 Mm.34201 NM_020576 ENSMUSG00000024409 Psors1c2 AI448740|Pcg|SPR1 - 17|17 B1 psoriasis susceptibility 1 candidate 2 (human) protein-coding 102634521 XR_391238 Gm32082 - - 7 B1|7 predicted gene, 32082 ncRNA 105243627 Gm39481 - - 7 A1|7 predicted gene, 39481 pseudo 665992 Mm.473674 NM_001085547 ENSMUSG00000089724 Krtap4-8 - - 11 D|11 keratin associated protein 4-8 protein-coding 16410 Mm.227 NM_008402 ENSMUSG00000027087 Itgav 1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik - 2 D|2 49.33 cM integrin alpha V protein-coding 15101 Mm.387042 NM_010400 H60a H60 - 10|10 histocompatibility 60a protein-coding 61546 D9Mit140 - - 9 24.1 cM DNA segment, Chr 9, Massachusetts Institute of Technology 140 unknown 13334 Del(Y)B10.BR-Y/Ms Del(Y)B10.BR-Y/Ma - - deletion, Chr Y, B10.BR-Y, Mishima other 239083 Mm.343880 NM_001111119 ENSMUSG00000071470 Ccnb1ip1 Gm288|Hei10|mei4 - 14|14 C1 cyclin B1 interacting protein 1 protein-coding 105421 AA516634 - - - expressed sequence AA516634 unknown 110328 Evi4 Evi-4 - - ecotropic viral integration site 4 protein-coding 100043772 Mm.129275 NM_001100456 ENSMUSG00000096916 Zfp850 C130069I09Rik|Gm4636 - 7 A3|7 zinc finger protein 850 protein-coding 626848 Mm.422604 NM_001177399 ENSMUSG00000074519 Zfp971 Etohi1 - 2|2 H4 zinc finger protein 971 protein-coding 102631784 XR_373967 Gm13267 - - 2 A1|2 3.62 cM predicted gene 13267 ncRNA 20962 Mm.297977 NM_011517 ENSMUSG00000020059 Sycp3 Cor1|Scp3 - 10|10 C1 synaptonemal complex protein 3 protein-coding 72486 Mm.291811 NM_026047 ENSMUSG00000022120 Rnf219 2610206B13Rik|2810449K13Rik|AI451544 - 14|14 E2.3 ring finger protein 219 protein-coding 105243239 XR_879015 Gm39213 - - 8 C3|8 predicted gene, 39213 ncRNA 320000 C630016I17Rik - - 12|12 RIKEN cDNA C630016I17 gene protein-coding 100035922 Blmpf5 - - 18 37.57 cM bleomycin-induced pulmonary fibrosis 5 unknown 382252 Mm.296254 NM_001033472 ENSMUSG00000044150 Bclaf3 2310067E24Rik|A830080D01Rik|Gm1146 - X|X F4 Bclaf1 and Thrap3 family member 3 protein-coding 102637746 XM_006523126 Gm34478 - - 16 C3.3|16 predicted gene, 34478 protein-coding 319820 Mm.443534 B230362B09Rik - - 15|15 RIKEN cDNA B230362B09 gene protein-coding 70549 Mm.33645 NM_027458 ENSMUSG00000052698 Tln2 5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320 - 9|9 C talin 2 protein-coding 333452 Mm.473671 NM_001085517 ENSMUSG00000061065 H2al1o EG333452|Gm5132 - X|X A1.1 H2A histone family member L1O protein-coding 404314 Mm.309892 NM_207554 Olfr257 - - - olfactory receptor 257 protein-coding 668779 Gm9354 EG668779 - 7|7 B4 predicted gene 9354 pseudo 100035987 Mskt6 - - - musculoskeletal traits 6 unknown 73140 3110040K02Rik - - 2|2 RIKEN cDNA 3110040K02 gene protein-coding 105245124 XR_871562 Gm40618 - - 10 A4|10 predicted gene, 40618 ncRNA 21881 Mm.290692 NM_009388 ENSMUSG00000021957 Tkt p68 - 14|14 B transketolase protein-coding 102635497 Gm32818 - - X|X predicted gene, 32818 pseudo 114607 Smt3h2-ps4 - - 1|1 A3 SMT3 suppressor of mif two 3 homolog 2, pseudogene 4 (S. cerevisiae) pseudo 105246884 XR_880132 Gm42089 - - 11 C|11 predicted gene, 42089 ncRNA 105245729 Gm41132 - - 14|14 predicted gene, 41132 ncRNA 100502775 Gm15609 - - 15|15 44.96 cM predicted gene 15609 ncRNA 623374 Gm6423 - - 6 F2|6 ubiquitin associated domain containing 1 pseudogene pseudo 66230 Mm.38460 NM_025434 ENSMUSG00000040269 Mrps28 1500012D08Rik|AW061224 - 3|3 A1 mitochondrial ribosomal protein S28 protein-coding 19727 Mm.161167 NM_011266 ENSMUSG00000036120 Rfxank Tvl1 - 8|8 B3.3 regulatory factor X-associated ankyrin-containing protein protein-coding 74011 Mm.288697 NM_028711 ENSMUSG00000023912 Slc25a27 3632410G24Rik|9430092A03Rik|D530043E16Rik|Ucp4 - 17|17 B3 solute carrier family 25, member 27 protein-coding 751533 NR_030758 ENSMUSG00000076127 Mir718 Mirn718|mir-718|mmu-mir-718 - X A7.3|X microRNA 718 ncRNA 64051 Mm.491135 NM_022030 ENSMUSG00000038486 Sv2a AI746429|mKIAA0736 - 3|3 F2.1 synaptic vesicle glycoprotein 2 a protein-coding 78076 Mm.196708 NM_033145 ENSMUSG00000036449 Lcn8 9230106L18Rik|EP17|Lcn5|mEP17 - 2|2 A3 lipocalin 8 protein-coding 320624 Mm.50107 NR_045398 4930474G06Rik - - 18|18 A2 RIKEN cDNA 4930474G06 gene ncRNA 606521 Gm6056 EG606521|Ppia-ps13_636.1 - 13|13 A5 peptidylprolyl isomerase A pseudogene 13_636.1 pseudo 105247093 XR_881098 Gm42253 - - 4 A1|4 predicted gene, 42253 ncRNA 21057 T(11;13)41Ad T41Ad - - reciprocal translocation, Chr 11 and 13, Adler 41 other 93859 D10Jor2 - - - DNA segment, Chr 10, Barbara Jordan 2 unknown 100502690 Gm12638 - - 4 C5|4 43.16 cM 10 kDa heat shock protein, mitochondrial-like pseudo 14419 Mm.4655 NM_010253 ENSMUSG00000024907 Gal Galn - 19 A|19 3.16 cM galanin protein-coding 77391 Mm.184166 9530003O04Rik - - 16|16 RIKEN cDNA 9530003O04 gene protein-coding 239420 Mm.309363 NM_001081391 ENSMUSG00000022311 Csmd3 4930500N14Rik|mKIAA1894 - 15|15 B3.3 CUB and Sushi multiple domains 3 protein-coding 100417835 Gm18856 - - 13|13 A1 zinc finger and BTB domain containing 7B pseudogene pseudo 102637341 XR_373779 Gm34177 - - 1 H5|1 predicted gene, 34177 ncRNA 110923 Tmevp2 - - - Theiler's murine encephalomyelitis virus persistence 2 protein-coding 102466823 NR_106099 ENSMUSG00000099031 Mir7240 Gm27487|mmu-mir-7240 - 8|8 B3.3 microRNA 7240 ncRNA 108254696 LOC108254696 - - - Pax8 promoter region biological-region 108168062 XR_001780854 Gm46400 - - 13 A1|13 predicted gene, 46400 ncRNA 105246272 Gm41578 - - 17|17 predicted gene, 41578 ncRNA 77369 9430087D07Rik - - 1|1 RIKEN cDNA 9430087D07 gene protein-coding 670453 Ccnb2-ps Gm9486 - 8 B3.3|8 cyclin B2, pseudogene pseudo 102632072 XR_387381 Gm30242 - - 1 E4|1 predicted gene, 30242 ncRNA 666539 Mm.394499 Gm8154 EG666539 - 9|9 A4 predicted gene 8154 unknown 102638260 Gm34864 - - 7|7 predicted gene, 34864 pseudo 20716 Mm.482074 NM_009252 ENSMUSG00000021091 Serpina3n Spi2-2|Spi2.2|Spi2/eb.4 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 3N protein-coding 383774 Gm11470 - - 2|2 H3 GLE1 RNA export mediator pseudogene pseudo 73191 Mm.55115 NM_028462 ENSMUSG00000029697 Fezf1 3110069A13Rik|Fez|Zfp312-like|fez-like - 6|6 A3.1 Fez family zinc finger 1 protein-coding 75016 Mm.394574 NR_130157 ENSMUSG00000097284 4930480K23Rik - - 14|14 D2 RIKEN cDNA 4930480K23 gene ncRNA 68189 Mm.442314 5330431K02Rik - - 13|13 D1 RIKEN cDNA 5330431K02 gene protein-coding 109280003 LOC109280003 Mm921 - - VISTA enhancer mm921 biological-region 100416868 Pgk1-ps3 Pgk-1ps3 - 3 A2|3 5.16 cM phosphoglycerate kinase 1, pseudogene 3 pseudo 22227 Mm.4177 NM_009463 ENSMUSG00000031710 Ucp1 AI385626|Slc25a7|Ucp - 8 C2|8 39.65 cM uncoupling protein 1 (mitochondrial, proton carrier) protein-coding 97028 Mm.426628 C87490 - - - expressed sequence C87490 protein-coding 111504 Pmv4 Pmv-4 - - polytropic murine leukemia virus 4 other 102636944 XR_387861 Gm33877 - - 8 C3|8 predicted gene, 33877 ncRNA 319760 Mm.440198 NM_176997 ENSMUSG00000097121 D130020L05Rik 9430007L23Rik - 12|12 E RIKEN cDNA D130020L05 gene ncRNA 320809 Mm.404435 A230056K03Rik - - 2|2 RIKEN cDNA A230056K03 gene protein-coding 328963 Mm.417203 NR_045401 G630071F17Rik G630071F17 - 18|18 D3 RIKEN cDNA G630071F17 gene ncRNA 272009 Mm.156636 NM_177774 ENSMUSG00000054679 Srsf12 B830039L16|Sfrs13b|Srrp|Srsf13b - 4|4 A5 serine/arginine-rich splicing factor 12 protein-coding 100036265 Skmw11 - - - skeletal muscle weight 11 unknown 102641498 XR_865366 Gm37915 - - 1 B|1 predicted gene, 37915 ncRNA 66962 Mm.46647 NM_025870 ENSMUSG00000051238 Swsap1 2310047B19Rik - 9|9 A3 SWIM type zinc finger 7 associated protein 1 protein-coding 100035537 Pgia25 - - - proteoglycan induced arthritis 25 unknown 100504491 Mm.482597 NM_001195730 ENSMUSG00000078552 Dcdc2b Gm12964|Gm1366 - 4|4 D2.2 doublecortin domain containing 2b protein-coding 627733 Gm15653 EG627733 - 5 C3.3|5 predicted gene 15653 pseudo 116515 Pvcan3 - - 18 18.17 cM protection against vaginal candidiasis 3 unknown 111857 Iapls3-65 - - - intracisternal A particle, lymphocyte specific 3-65 other 246228 Mm.26515 NM_147776 ENSMUSG00000042116 Vwa1 4932416A11Rik|WARP - 4|4 E2 von Willebrand factor A domain containing 1 protein-coding 112048 Kwq6 - - - kidney weight QTL 6 unknown 320997 Mm.130900 NM_177307 ENSMUSG00000061126 Cyp4f39 4732474A20Rik - 17|17 B1 cytochrome P450, family 4, subfamily f, polypeptide 39 protein-coding 224860 Mm.217362 NM_013880 ENSMUSG00000038910 Plcl2 PLC-L2|PRIP-2|Plce2|mKIAA1092 - 17|17 C phospholipase C-like 2 protein-coding 102631589 Gm10479 - - 12|12 8.26 cM predicted gene 10479 protein-coding 665674 Tpi-rs10 EG665674|Gm7744|Tpi-10 - 18 A2|18 11.41 cM triosephosphate isomerase related sequence 10 pseudo 67704 Mm.24219 NM_024461 ENSMUSG00000054091 1810037I17Rik 5730414I01Rik|Aln - 3|3 G1 RIKEN cDNA 1810037I17 gene protein-coding 14065 Mm.12948 NM_007975 ENSMUSG00000050147 F2rl3 PAR4 - 8 35.08 cM|8 B3.3 coagulation factor II (thrombin) receptor-like 3 protein-coding 394430 Mm.300095 NM_201641 ENSMUSG00000090165 Ugt1a10 A13|Ugt1a13 - 1|1 D UDP glycosyltransferase 1 family, polypeptide A10 protein-coding 108168217 Gm28117 - - 15 D3|15 predicted gene 28117 pseudo 268752 Mm.1960 NM_175546 ENSMUSG00000014547 Wdfy2 5830485M08|B130024L21Rik|ProF|ZFYVE22 - 14|14 D1 WD repeat and FYVE domain containing 2 protein-coding 108167916 LOC108167916 - - 11 C 60S ribosomal protein L18 pseudogene pseudo 74129 Mm.21789 NM_028772 ENSMUSG00000042102 Dmgdh 1200014D15Rik|AI787269 - 13|13 C3 dimethylglycine dehydrogenase precursor protein-coding 434341 Mm.334720 NM_001033207 ENSMUSG00000074151 Nlrc5 AI451557|AK220210|NOD27 - 8|8 C5 NLR family, CARD domain containing 5 protein-coding 12961 Mm.1215 NM_007773 ENSMUSG00000042240 Crybb2 Cryb-2 - 5 F|5 55.38 cM crystallin, beta B2 protein-coding 100416054 Gm15693 - - 16|16 C1.1 predicted gene 15693 pseudo 108169085 XR_001785025 LOC108169085 - - 5 G3 uncharacterized LOC108169085 ncRNA 102465979 NR_105880 ENSMUSG00000106600 Mir6915 mmu-mir-6915 - 10|10 D3 microRNA 6915 ncRNA 100418389 Gm19178 - - 9|9 A2 amyloid beta (A4) precursor protein-binding, family B, member 1 pseudogene pseudo 105244282 XR_866702 Gm27003 - - 2 F1|2 predicted gene, 27003 ncRNA 319262 Mm.285060 NM_175684 ENSMUSG00000038524 Fchsd1 A030002D08Rik - 18|18 B3 FCH and double SH3 domains 1 protein-coding 320436 Mm.132155 C030009J22Rik - - 12|12 RIKEN cDNA C030009J22 gene protein-coding 102466998 NR_106103 ENSMUSG00000099119 Mir6546 Gm27408|mmu-mir-6546 - 1|1 H3 microRNA 6546 ncRNA 102639236 XR_377219 Gm35592 - - 5 G3|5 predicted gene, 35592 ncRNA 100552 AA675344 AI593684 - - expressed sequence AA675344 protein-coding 105244081 XR_865965 Gm39758 - - 2 A1|2 predicted gene, 39758 ncRNA 26367 Mm.439731 NM_007543 ENSMUSG00000054385 Ceacam2 AI267129|Bgp2|Ceacam2-L - 7 A3|7 13.87 cM carcinoembryonic antigen-related cell adhesion molecule 2 protein-coding 73125 3110037C07Rik - - 3|3 RIKEN cDNA 3110037C07 gene protein-coding 212727 Gm4778 EG212727 - 3|3 F2.1 TD and POZ domain containing pseudogene pseudo 100035750 Ltsd7 - - 16 3.33 cM lung tumor shape-determining 7 unknown 258491 Mm.377533 NM_146498 ENSMUSG00000109884 Olfr490 MOR204-17 - 7|7 E3 olfactory receptor 490 protein-coding 105243425 XR_870822 Gm39351 - - 9 B|9 predicted gene, 39351 ncRNA 71121 Mm.483106 NM_001033160 4933407I18Rik - - 9|9 B RIKEN cDNA 4933407I18 gene unknown 73219 3110080E11Rik - - 8|8 RIKEN cDNA 3110080E11 gene protein-coding 75500 Mm.79012 NM_029312 1700010H22Rik 4930440M09Rik - 5|5 E3 RIKEN cDNA 1700010H22 gene unknown 329633 Mm.389432 XR_001783788 Gm20557 4932443G14 - 3|3 C predicted gene, 20557 unknown 433716 Gm11222 - - 4|4 C2 ribosomal protein L7-like 1 pseudogene pseudo 629081 Gm6946 EG629081 - 7|7 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 112164 Faq8 - - 15 1.84 cM fluctuating asymmetry QTL 8 unknown 102631666 XR_376087 Gm29949 - - 3 G3|3 predicted gene, 29949 ncRNA 100043385 Gm16494 - - 17 C|17 predicted gene 16494 protein-coding 102637035 Mm.242313 XR_001784265 Gm17094 - - 4 A5|4 20.13 cM predicted gene 17094 ncRNA 105180386 E130116C07Rik - - - Riken cDNA E130116C07 gene protein-coding 105244471 XR_867364 Gm40073 - - 3 E3|3 predicted gene, 40073 ncRNA 53013 CA7.5 - - - DNA segment, CA7.5 unknown 320870 Mm.447184 E330013P08Rik - - 2|2 RIKEN cDNA E330013P08 gene ncRNA 102467549 n-TLaag2 n-Tl2 - - nuclear encoded tRNA leucine 2 (anticodon AAG) tRNA 64379 Mm.137247 NM_022428 ENSMUSG00000031738 Irx6 - - 8 C5|8 44.99 cM Iroquois homeobox 6 protein-coding 102639369 XR_375838 Gm35699 - - 3 F1|3 predicted gene, 35699 ncRNA 257901 Olfr1096-ps1 MOR206-6 - 2|2 D olfactory receptor 1096, pseudogene 1 pseudo 493003 Nrtim1 - - 5 54.68 cM neurotensin immunoreactivity 1 unknown 105242943 XR_882089 Gm39014 - - 7 B5|7 predicted gene, 39014 ncRNA 23810 B160F9T - - - DNA segment B160-F-9-T unknown 108167890 XR_001780169 LOC108167890 - - 11 A3.2 uncharacterized LOC108167890 ncRNA 100041478 Gm3362 - - 15 B3.1|15 predicted pseudogene 3362 protein-coding 100043872 Rpl17-ps9 Gm10166 - 7|7 B2 ribosomal protein L17, pseudogene 9 pseudo 58212 Mm.271230 NM_021403 ENSMUSG00000039860 Srrm3 2900083I11Rik|AB041661|SRm300-like|Srrm2l - 5|5 G2 serine/arginine repetitive matrix 3 protein-coding 102634820 XR_389962 Gm32315 - - 7 F4|7 predicted gene, 32315 ncRNA 105243538 XR_871283 Gm39430 - - 9 F3|9 predicted gene, 39430 ncRNA 85072 D7Mit34 - - 7 54.85 cM DNA segment, Chr 7, Massachusetts Institute of Technology 34 unknown 242851 Mm.332230 NM_001081143 ENSMUSG00000028777 Gnat3 Ggust|Gtn - 5|5 A3 guanine nucleotide binding protein, alpha transducing 3 protein-coding 100039313 Gm15060 - - X|X F2 predicted gene 15060 pseudo 109898 Uvbs1 - - - UVB susceptibility 1 protein-coding 110572 Tcra-V19.1 - - - T cell receptor alpha, variable 19.1 other 665473 Gm7650 EG665473 - 18|18 A1 fibrillarin pseudogene pseudo 105242958 XR_880208 Gm39022 - - 11 D|11 predicted gene, 39022 ncRNA 100124438 NR_030759 ENSMUSG00000076315 Mir343 Mirn343|mmu-mir-343 - 7 A3|7 microRNA 343 ncRNA 102637409 LOC102637409 - - - uncharacterized LOC102637409 ncRNA 105244393 Gm40012 - - 11|11 predicted gene, 40012 ncRNA 102638780 Gm35262 - - 9 E1|9 predicted gene, 35262 pseudo 110120521 LOC110120521 - - - VISTA enhancer mm1583 biological-region 100093677 Trnad-guc - - - transfer RNA aspartic acid (anticodon GUC) tRNA 100035571 Lpolv - - - lipid peroxidation in liver unknown 100038653 Mm.421275 NR_045892 ENSMUSG00000101126 Gm10538 - - 1 E4|1 predicted gene 10538 ncRNA 100418049 Gm16274 - - 19|19 A family with sequence similarity 111, member A pseudogene pseudo 105242920 XR_881989 LOC105242920 - - 7 B2 uncharacterized LOC105242920 ncRNA 623783 X75261 - - 13 A1 cDNA sequence X75261 protein-coding 52841 Mm.439839 D2Bwg0886e - - 2 22.06 cM DNA segment, Chr 2, Brigham & Women's Genetics 0886 expressed unknown 320020 Mm.445111 NR_126484 6330415G19Rik - - 17|17 A3.3 RIKEN cDNA 6330415G19 gene ncRNA 78655 Mm.458184 NM_144545 ENSMUSG00000027236 Eif3j1 1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B - 2|2 E5 eukaryotic translation initiation factor 3, subunit J1 protein-coding 243983 Mm.279116 NM_028031 ENSMUSG00000030471 Zdhhc13 2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4 - 7|7 B4 zinc finger, DHHC domain containing 13 protein-coding 105244922 XR_872832 Gm40444 - - 12 C3|12 predicted gene, 40444 ncRNA 19683 Mm.100276 NM_009040 ENSMUSG00000069456 Rdh16 CRAD|CRAD1|Rdh6 - 10|10 D3 retinol dehydrogenase 16 protein-coding 72999 Mm.27136 NM_133748 ENSMUSG00000003721 Insig2 2900053I11Rik|C730043J18Rik|Insig-2 - 1|1 E2.3 insulin induced gene 2 protein-coding 108404 Srev17 Srev-17 - - SWR/J-RF/J ecotropic provirus 17 other 109280045 LOC109280045 Mm383 - - VISTA enhancer mm383 biological-region 100503664 Gm13012 - - 4|4 70.02 cM predicted gene 13012 ncRNA 436563 Gm5773 EG436563 - 3|3 F2.1 TD and POZ domain containing 2 pseudogene pseudo 27403 Mm.103351 NM_013850 ENSMUSG00000035722 Abca7 ABCX|Abc51 - 10 C1|10 39.72 cM ATP-binding cassette, sub-family A (ABC1), member 7 protein-coding 74359 Mm.79815 NM_028890 ENSMUSG00000022179 4931414P19Rik Rtfc - 14|14 C2 RIKEN cDNA 4931414P19 gene protein-coding 671731 Gm9541 - - 9|9 E3.1 transmembrane protein 35 pseudogene pseudo 252875 Mm.257151 NM_145374 ENSMUSG00000042447 Mios C81488 - 6|6 A1 meiosis regulator for oocyte development protein-coding 224697 Mm.29304 NM_172619 ENSMUSG00000024299 Adamts10 9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp - 17|17 B1 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10 protein-coding 102639859 XR_376602 Gm36073 - - 4 D2.1|4 predicted gene, 36073 ncRNA 100042424 XM_001478256 Pdcd5-ps Gm37810|Gm3837 - 1 H6|1 programmed cell death 5, pseudogene pseudo 102632660 XR_374986 Gm30679 - - 2 F1|2 predicted gene, 30679 ncRNA 106145633 Gp-lcr - - - glycophorin locus control region-like region biological-region 100126819 Gm10076 - - 14|14 E2.3 ribosomal protein L41 pseudogene pseudo 235431 Mm.335229 NM_175484 ENSMUSG00000041729 Coro2b CLIPINC|E130012P22Rik - 9|9 B coronin, actin binding protein, 2B protein-coding 100035555 Skmw4 - - - skeletal muscle weight 4 unknown 69129 Mm.45279 NM_026951 ENSMUSG00000069633 Pex11g 1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma - 8|8 A1.1 peroxisomal biogenesis factor 11 gamma protein-coding 218997 Rpl19-ps3 EG218997|Gm4818|Rpl19-ps - 14|14 C1 ribosomal protein L19, pseudogene 3 pseudo 19464 Rb(10.14)1Ad Rb1Ad - - Robertsonian translocation, Chr 10 and 15, Adler 1 other 57426 Mm.6205 NM_020563 ENSMUSG00000062556 Scgb1b2 Abpa2|Abph|Apbh|LGP|Mja1l|Scgb1b1 - 7|7 B1 secretoglobin, family 1B, member 2 protein-coding 77414 Mm.417145 NR_077216 C030013G03Rik - - 17|17 A1 RIKEN cDNA C030013G03 gene ncRNA 102639414 Gm35736 - - 6|6 predicted gene, 35736 pseudo 56710 Mm.248788 NM_019967 ENSMUSG00000028351 Brinp1 BRINP|Dbc1|Dbccr1|Fam5a - 4|4 C1 bone morphogenic protein/retinoic acid inducible neural specific 1 protein-coding 102640849 XR_389099 Gm36818 - - 11 E1|11 predicted gene, 36818 ncRNA 399577 B230204D01Rik - - - RIKEN cDNA B230204D01 gene protein-coding 100504590 Gm20302 - - 1|1 49.63 cM predicted gene, 20302 pseudo 102636449 Gm33511 - - 18|18 predicted gene, 33511 ncRNA 14758 Mm.222320 NM_023122 ENSMUSG00000031342 Gpm6b AI593561|Gpm6|M6B - X|X F5 glycoprotein m6b protein-coding 19869 Rnu7-ps3 - - 1|1 E4 U7 small nuclear RNA, pseudogene 3 pseudo 11964 Mm.217787 NM_007508 ENSMUSG00000052459 Atp6v1a AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2 - 16|16 B4 ATPase, H+ transporting, lysosomal V1 subunit A protein-coding 100049565 Mm.249016 B230207O21Rik - - 3|3 RIKEN cDNA B230207O21 gene unknown 16245 In(14)22Rk-d In(14)22Rk|In22Rk - - inversion, Chr 14, Roderick 22, distal other 100416502 Gm18131 - - 13|13 A2 cofilin 1, non-muscle pseudogene pseudo 627132 Mm.469862 NM_001104542 ENSMUSG00000079698 Vmn2r93 EG627132 - 17|17 A3.2 vomeronasal 2, receptor 93 protein-coding 319670 Mm.390484 NM_001081191 ENSMUSG00000051166 Eml5 BC027154|C130068M19Rik - 12|12 E echinoderm microtubule associated protein like 5 protein-coding 112055 Kwq4 - - - kidney weight QTL 4 unknown 102639022 Mm.365994 XR_375831 Gm35439 Gm43740 - 3 F1|3 predicted gene, 35439 ncRNA 102639509 XR_374292 Gm35808 Gm44179 - 2 B|2 predicted gene, 35808 ncRNA 105244138 XR_866183 Gm39805 - - 2 B|2 predicted gene, 39805 ncRNA 102992 AU022788 - - - expressed sequence AU022788 unknown 258163 Mm.377367 NM_001011858 ENSMUSG00000060105 Olfr504 MOR40-15|MOR40-7P - 7|7 E3 olfactory receptor 504 protein-coding 100034900 Nidd6k - - - Nidd6 on KK-A unknown 100504123 Gm20074 - - 7 B4|7 33.06 cM splicing factor, arginine/serine-rich 3-like pseudo 102637460 XR_379152 Gm34263 - - 9 A2|9 predicted gene, 34263 ncRNA 108663994 LOC108663994 - - 14 B ES cell cis-regulatory motif 1d biological-region 56367 Mm.246911 NM_019708 ENSMUSG00000063253 Scoc 0610011C06Rik|2810002J11Rik|AA415030|SCOCO - 8|8 C2 short coiled-coil protein protein-coding 320795 Mm.213000 NM_177262 ENSMUSG00000057672 Pkn1 DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3 - 8 C2|8 40.22 cM protein kinase N1 protein-coding 668497 Ighv1-20 EG668497|Gm9206 - 12|12 F2 immunoglobulin heavy variable V1-20 other 320748 B930032E21Rik - - 5|5 RIKEN cDNA B930032E21 gene protein-coding 664822 Gm13331 - - 2|2 A3 ubiquitin-conjugating enzyme E2D 3 pseudogene pseudo 110841 Mybbp1a-rs1 P160-rs1 - - MYB binding protein (P160) 1a, related sequence 1 protein-coding 667828 Gm13655 - - 2|2 C3 predicted gene 13655 ncRNA 58237 Mm.40361 NM_021426 ENSMUSG00000027574 Nkain4 AB030182|C030019F02Rik - 2|2 H4 Na+/K+ transporting ATPase interacting 4 protein-coding 102642689 LOC102642689 - - - 40S ribosomal protein SA protein-coding 109279905 LOC109279905 Mm90 - - VISTA enhancer mm90 biological-region 664858 Mm.29090 XR_870093 Gm45231 - - 8|8 A1.1 predicted gene 45231 unknown 102637380 XR_385134 Gm34208 - - 17 A1|17 predicted gene, 34208 ncRNA 102637078 XR_380635 Gm33980 - - 10 C1|10 predicted gene, 33980 ncRNA 100526474 NR_037235 ENSMUSG00000092741 Mir3074-1 mmu-mir-3074-1 - 13 B3|13 32.8 cM microRNA 3074-1 ncRNA 105246841 XR_879471 Gm42063 - - 19 A|19 predicted gene, 42063 ncRNA 76065 5830436C15Rik - - 8|8 RIKEN cDNA 5830436C15 gene protein-coding 102637467 Gm34270 - - 12|12 predicted gene, 34270 ncRNA 100035527 Tshp1 QTL-TSH1.1 - - tooth shape 1 unknown 242711 Mm.475541 NM_001126318 ENSMUSG00000078520 Cela3a Gm13011 - 4|4 D3 chymotrypsin-like elastase family, member 3A protein-coding 102637573 XR_381254 Gm34348 - - 12 A1.1|12 predicted gene, 34348 ncRNA 541463 Mm.84066 NM_001013609 ENSMUSG00000071138 Tex24 1700108N07Rik|TESF-1 - 8|8 A2 testis expressed gene 24 protein-coding 105246761 Gm42003 - - 5|5 predicted gene, 42003 ncRNA 102638215 XR_379522 Gm34828 - - 9 B|9 predicted gene, 34828 ncRNA 102467604 n-TTagt7 n-Tt7 - 11 B3|11 nuclear encoded tRNA threonine 7 (anticodon AGT) tRNA 226041 Mm.105222 NM_175013 ENSMUSG00000041731 Pgm5 4833423B07|9530034F03Rik|D830025G17|aciculin - 19|19 B phosphoglucomutase 5 protein-coding 230612 Mm.26630 NM_145551 ENSMUSG00000028544 Slc5a9 AI159731|SGLT4 - 4|4 D1 solute carrier family 5 (sodium/glucose cotransporter), member 9 protein-coding 109505 Alcp21 - - - alcohol preference locus 21, male specific unknown 433945 Mm.246920 XR_387667 Gm5563 EG433945 - 5|5 F predicted gene 5563 ncRNA 66113 Mm.29738 NM_080434 ENSMUSG00000032079 Apoa5 1300007O05Rik|Apoav|RAP3 - 9|9 A5.2 apolipoprotein A-V protein-coding 102635950 XR_385182 Gm33158 - - 17 A1|17 predicted gene, 33158 ncRNA 102639120 Gm35508 - - 7|7 predicted gene, 35508 protein-coding 19328 Mm.248313 NM_024448 ENSMUSG00000023460 Rab12 2900054P15Rik|AW555448|C77700 - 17|17 E1.1 RAB12, member RAS oncogene family protein-coding 102640947 Gm36892 - - 12|12 predicted gene, 36892 protein-coding 232035 Mm.150324 NM_183310 ENSMUSG00000039578 Ccser1 6230405M12Rik|C130092O11Rik|Fam190a - 6|6 B3 coiled-coil serine rich 1 protein-coding 18491 Mm.317854 NM_021362 ENSMUSG00000028370 Pappa 8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A - 4 C1|4 34.14 cM pregnancy-associated plasma protein A protein-coding 27770 42J20R - - - DNA segment, 42J20R (Research Genetics) unknown 100417780 Gm18820 - - 9|9 A4 aldo-keto reductase family 1, member D1 pseudogene pseudo 102636895 XR_380712 Gm33843 - - 10 C3|10 predicted gene, 33843 ncRNA 102640772 NR_151473 ENSMUSG00000100594 2810414N06Rik - - 1|1 G1 RIKEN cDNA 2810414N06 gene ncRNA 252910 Mm.451639 NM_145848 ENSMUSG00000059206 Vmn1r71 V1re13 - 7|7 A1 vomeronasal 1 receptor 71 protein-coding 110623 H2-T15 H-2T15 - - histocompatibility 2, T region locus 15 protein-coding 105247049 XR_880870 Gm42225 - - 5 A3|5 predicted gene, 42225 ncRNA 74188 Mm.46090 NM_023741 ENSMUSG00000021346 Prl8a8 1600032B14Rik|Ghd14|PLP-C3|PLP-Cgamma|Prlpc3 - 13|13 A3.1 prolactin family 8, subfamily a, member 81 protein-coding 76141 6230414M07Rik - - 11|11 RIKEN cDNA 6230414M07 gene protein-coding 320974 Mm.357342 NM_177303 ENSMUSG00000043110 Lrrn4 B430119L13Rik|Nlrr4 - 2|2 F2 leucine rich repeat neuronal 4 protein-coding 102632207 Gm30347 - - 10|10 predicted gene, 30347 ncRNA 108167762 XR_001779672 Gm46184 - - 10 D3|10 predicted gene, 46184 ncRNA 102467260 n-TNgtt14 n-Tn14 - 5 G3|5 nuclear encoded tRNA asparagine 14 (anticodon GTT) tRNA 114526 Bglu1 - - 2 59.34 cM blood glucose level 1 unknown 105242729 Gm38869 - - 6|6 predicted gene, 38869 ncRNA 102633579 XR_384375 Gm31370 - - 15 E3|15 predicted gene, 31370 ncRNA 320552 Mm.25252 D930019F10Rik - - 10|10 RIKEN cDNA D930019F10 gene protein-coding 751864 Mm.431296 NM_001076679 ENSMUSG00000078783 Gm9733 - - 3 A1|3 predicted gene 9733 protein-coding 66620 Mm.383631 NR_110495 ENSMUSG00000097063 Pantr2 2610207O16Rik|Pou3f3os2|linc-Brn1b - 1|1 B POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2 ncRNA 664911 Gm11878 - - 4|4 A3 predicted gene 11878 pseudo 105245049 XR_872933 Gm40558 - - 12 E|12 predicted gene, 40558 ncRNA 76399 Mm.75049 NM_029594 ENSMUSG00000029437 Il31 1700013B14Rik - 5|5 F interleukin 31 protein-coding 258523 Mm.377551 NM_146530 ENSMUSG00000082882 Olfr1186 MOR230-5 - 2|2 D olfactory receptor 1186 protein-coding 105244893 Mm.243740 XR_001780608 Gm40421 - - 12 B3|12 predicted gene, 40421 ncRNA 108168407 XR_001782645 Gm46646 - - 19 A|19 predicted gene, 46646 ncRNA 62135 D13Mit65 - - 13 30.52 cM DNA segment, Chr 13, Massachusetts Institute of Technology 65 unknown 111477 Srev5 Srev-5 - - SWR/J-RF/J ecotropic provirus 5 other 69909 Mm.440214 NR_077059 ENSMUSG00000087013 2610027K06Rik - - 11|11 C RIKEN cDNA 2610027K06 gene ncRNA 102635220 XR_382364 Gm32613 - - 13 A5|13 predicted gene, 32613 ncRNA 78421 Mm.118615 9530046B11Rik - - 5|5 F RIKEN cDNA 9530046B11 gene protein-coding 105242806 Gm38916 - - 6|6 predicted gene, 38916 ncRNA 62785 D15Mit216 - - 15 41.6 cM DNA segment, Chr 15, Massachusetts Institute of Technology 216 unknown 105244242 XR_866570 Gm39885 - - 2 E1|2 predicted gene, 39885 ncRNA 110601 H2-T6 H-2T6 - - histocompatibility-2, T region, locus 6 protein-coding 53749 D12Nds1 D0Nds19 - 12 25.97 cM DNA segment, Chr 12, Nuffield Department of Surgery 1 unknown 100417827 Gm18850 - - 7|7 A1 zinc finger and SCAN domain containing 4C pseudogene pseudo 105465 AI225892 - - - expressed sequence AI225892 unknown 15242 Mm.33896 NM_008245 ENSMUSG00000024986 Hhex Hex|Hex1|Hhex-rs2|Prh|Prhx - 19 C2|19 32.28 cM hematopoietically expressed homeobox protein-coding 108168508 Gm46703 - - Y B|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 102641068 Mm.273930 XR_881601 Gm38529 - - 4 E2|4 predicted gene, 38529 protein-coding 105243789 LOC105243789 - - - uncharacterized LOC105243789 ncRNA 100093652 Trnas-uga - - - transfer RNA serine (anticodon UGA) tRNA 56187 Mm.87216 NM_019519 ENSMUSG00000040472 Rabggta gm - 14 C3|14 28.19 cM Rab geranylgeranyl transferase, a subunit protein-coding 102634004 Gm31694 - - 16|16 predicted gene, 31694 protein-coding 100165 Mm.439819 NR_033566 ENSMUSG00000073731 AI507597 - - 4|4 D3 expressed sequence AI507597 ncRNA 194433 Mm.464550 NM_001005570 ENSMUSG00000069390 Olfr707 MOR260-8P - 7|7 E3 olfactory receptor 707 protein-coding 102633664 Gm31435 - - 17|17 predicted gene, 31435 ncRNA 11552 Mm.347390 NM_009633 ENSMUSG00000058620 Adra2b Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B - 2 F1|2 61.95 cM adrenergic receptor, alpha 2b protein-coding 100034807 Cia12 mCia12 - - collagen induced arthritis QTL 12 unknown 666812 Gm8303 EG666812 - X|X F2 lysyl-tRNA synthetase pseudogene pseudo 108167304 LOC108167304 - - 5 B1 Dpp6 Hedgehog-responsive enhancer biological-region 102637781 XR_389828 LOC102637781 - - - uncharacterized LOC102637781 ncRNA 102638774 XM_006523135 Gm35257 - - 16 C3.3|16 predicted gene, 35257 protein-coding 21044 T(10;16)232Dn T232Dn - - reciprocal translocation, Chr 10 and 16, Davisson 232 other 104435 Rgv2 Rgv-2 - - resistance to Gross virus 2 protein-coding 60847 D5Mit65 - - 5 62.96 cM DNA segment, Chr 5, Massachusetts Institute of Technology 65 unknown 622313 Gm6311 EG622313 - 13|13 C1 ribosomal protein S2 pseudogene pseudo 102636615 Gm11345 - - 13|13 10.33 cM predicted gene 11345 ncRNA 100417655 Gm18743 - - 11|11 A4 von Hippel-Lindau binding protein 1 pseudogene pseudo 102638414 XR_381699 Gm34988 - - 12 C3|12 predicted gene, 34988 ncRNA 100416002 Gm17862 - - X|X A3.1 predicted gene, 17862 pseudo 108168490 LOC108168490 - - X C3 proteasome (prosome, macropain) subunit, beta type 1 pseudogene pseudo 100036131 Mfat3 - - - M-line adipose tissue, abdominal and gonadal fat 3 unknown 100039523 Gm20805 - - Y|Y predicted gene, 20805 protein-coding 100042545 Mm.445479 Gm3896 Gm1708 - 9 A4|9 predicted gene 3896 protein-coding 100043820 Mm.158729 XR_375075 9030622O22Rik - - 2|2 G3 RIKEN cDNA 9030622O22 gene unknown 635295 Gm7155 EG635295 - X A7.3|X lysyl-tRNA synthetase pseudogene pseudo 102639546 Gm35836 - - 17|17 predicted gene, 35836 ncRNA 18609 Mm.389714 NM_008814 ENSMUSG00000029644 Pdx1 IDX-1|IPF-1|Ipf1|Mody4|STF-1|pdx-1 - 5 G3|5 86.84 cM pancreatic and duodenal homeobox 1 protein-coding 110453 Ly6b - - - lymphocyte antigen 6 complex, locus B protein-coding 102640557 XR_379910 Gm36592 - - 9 F3|9 predicted gene, 36592 ncRNA 100042707 Obox4-ps13 Gm3980 - 7 A1|7 oocyte specific homeobox 4, pseudogene 13 pseudo 104168 Rmp1 Rmp-1 - - resistance to mousepox protein-coding 258759 Mm.389211 NM_146764 ENSMUSG00000062527 Olfr1408 MOR267-4 - 1|1 H3 olfactory receptor 1408 protein-coding 320646 Mm.399703 6030439D06Rik - - 8|8 RIKEN cDNA 6030439D06 gene protein-coding 100417201 Gm18445 - - 1|1 H3 interferon activated gene 204 pseudogene pseudo 76088 Mm.102485 NM_028785 ENSMUSG00000052085 Dock8 1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977 - 19|19 B dedicator of cytokinesis 8 protein-coding 100036164 Hdlq38 - - - HDl QTL 38 unknown 109280111 LOC109280111 Mm1335 - - VISTA enhancer mm1335 biological-region 100504304 Mm.353315 XR_105893 Gm20161 - - 17 A3.3|17 15.46 cM predicted gene, 20161 ncRNA 433217 Gm16437 EG666538 - 19|19 A IscU iron-sulfur cluster scaffold homolog pseudogene pseudo 106635680 Apob-icr - - - Apob intestinal control region (ICR) biological-region 73617 Mm.352925 NR_152131 ENSMUSG00000099735 1700122H20Rik Gm29205 - 17|17 A1 RIKEN cDNA 1700122H20 gene ncRNA 105245893 XR_875048 Gm41274 - - 15 A1|15 predicted gene, 41274 ncRNA 100034893 Hdl6 - - - HDL level 6 unknown 11475 Mm.213025 NM_007392 ENSMUSG00000035783 Acta2 0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA - 19|19 C1 actin, alpha 2, smooth muscle, aorta protein-coding 108168474 XR_001782785 Gm46684 - - X F3|X predicted gene, 46684 ncRNA 100035637 Msq1 - - - MAV-1 susceptibility QTL 1 unknown 105245708 Gm41116 - - 14|14 predicted gene, 41116 ncRNA 19488 Rb(13.16)1Mpl Rb1Mpl - - Robertsonian translocation, Chr 13 and 16, Montpellier 1 other 333315 Mm.134296 NM_001167898 ENSMUSG00000042353 Frem3 Gm795|NV2 - 8|8 C2 Fras1 related extracellular matrix protein 3 protein-coding 69104 Mm.175989 NM_027314 ENSMUSG00000023307 March5 1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153 - 19|19 C2 membrane-associated ring finger (C3HC4) 5 protein-coding 53965 Mm.440786 9430099O15Rik AA920845 - - RIKEN cDNA 9430099O15 gene protein-coding 100093660 Trnat-ugu - - - transfer RNA threonine (anticodon UGU) tRNA 51865 D2Ertd122e - - 2 80.96 cM DNA segment, Chr 2, ERATO Doi 122, expressed unknown 112193 Hacu - - - high affinity choline uptake unknown 665410 Gm7627 EG665410 - 7 C|7 predicted gene 7627 pseudo 319455 Mm.338001 NM_176916 ENSMUSG00000055214 Pld5 B230365F16Rik - 1|1 H4 phospholipase D family, member 5 protein-coding 100416263 Gm13859 - - 6|6 B1 RIO kinase 2 pseudogene pseudo 258645 Mm.377611 NM_146651 ENSMUSG00000049605 Olfr418 MOR267-12P|MOR267-8|Olfr1403|Olfr418-ps1 - 1|1 H3 olfactory receptor 418 protein-coding 330689 Gm5116 EG330689 - 7|7 B1 predicted gene 5116 protein-coding 100035077 W10q5 - - - weight 10 weeks QTL 5 unknown 102634071 Gm31744 - - 13|13 predicted gene, 31744 ncRNA 100417417 Gm18600 - - 7|7 F3 motile sperm domain containing 3 pseudogene pseudo 226182 Mm.301522 NM_177342 ENSMUSG00000025049 Taf5 6330528C20Rik|AV117817 - 19|19 C3 TATA-box binding protein associated factor 5 protein-coding 109835 H32 H-32 - - histocompatibility 32 protein-coding 108167936 XR_001780355 Gm46299 - - 11 E1|11 predicted gene, 46299 ncRNA 56524 Mm.41288 NM_008016 ENSMUSG00000038388 Mpp6 P55t|Pals2 - 6 B2.3|6 24.13 cM membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) protein-coding 668221 Gm9051 EG668221 - X|X C3 solute carrier family 37 (glycerol-3-phosphate transporter), member 3 pseudogene pseudo 258605 Mm.271458 NM_146612 ENSMUSG00000095903 Olfr968 MOR171-15 - 9|9 A5.1 olfactory receptor 968 protein-coding 102635119 XR_378615 Gm32539 - - 7 F5|7 predicted gene, 32539 ncRNA 503493 Ear-ps9 - - 14 C1|14 eosinophil-associated, ribonuclease A family, pseudogene 9 pseudo 100126452 Trav15n-1 Gm16940 - 14|14 C2 T cell receptor alpha variable 15N-1 other 105242404 LOC105242404 - - - sp110 nuclear body protein-like pseudo 105242393 Gm38677 - - 7|7 predicted gene, 38677 ncRNA 102634906 XR_383275 Gm32379 - - 14 A3|14 predicted gene, 32379 ncRNA 665066 Gm14911 - - X|X E1 lactate dehydrogenase A pseudogene pseudo 102637791 XR_375177 Gm34514 - - 2 H1|2 predicted gene, 34514 ncRNA 140482 Mm.299073 NM_080461 ENSMUSG00000047264 Zfp358 Zfend - 8 A1.1|8 1.92 cM zinc finger protein 358 protein-coding 18483 Mm.34650 NM_023128 ENSMUSG00000035863 Palm - - 10 C1|10 39.72 cM paralemmin protein-coding 68106 Mm.28738 NM_026561 ENSMUSG00000017176 Nt5c3b 2610037D24Rik|AI841843|C330027I04Rik|Nt5c3l - 11|11 D 5'-nucleotidase, cytosolic IIIB protein-coding 380916 Mm.288868 NM_001033439 ENSMUSG00000068015 Lrch1 4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016 - 14|14 D3 leucine-rich repeats and calponin homology (CH) domain containing 1 protein-coding 108168686 XR_001782946 LOC108168686 - - - uncharacterized LOC108168686 ncRNA 668758 Mm.445163 NM_001177419 ENSMUSG00000054087 Fbxw28 Gm9337 - 9 F2|9 F-box and WD-40 domain protein 28 protein-coding 108168137 n-TKttt22 Trnak-uuu|n-TKctt22|n-Tk22 - 13 A3.1|13 nuclear encoded tRNA lysine 22 (anticodon TTT) tRNA 286940 Mm.489652 NM_134080 ENSMUSG00000025278 Flnb AL024016|Fln-b - 14|14 A1 filamin, beta protein-coding 13522 Mm.117450 NM_010082 ENSMUSG00000014725 Adam28 C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII - 14|14 D1 a disintegrin and metallopeptidase domain 28 protein-coding 107627 If2 If-2 - - MTV-induced circulating interferon protein-coding 434760 Mm.335787 NM_001081669 ENSMUSG00000095698 Rhox2d EG434760|Rhox2.4|Rhox2c - X|X A3.3 reproductive homeobox 2D protein-coding 384806 Mm.444736 NM_001009548 ENSMUSG00000046282 Adam20 4930529F22Rik|Adam38 - 8|8 A4 a disintegrin and metallopeptidase domain 20 protein-coding 105244494 XR_867449 Gm40091 - - 3 F1|3 predicted gene, 40091 ncRNA 16262 In(19)37Rk In37Rk - - inversion, Chr 19, Roderick 37 other 257952 Olfr1332-ps1 GA_x5J8B7TQG34-443-1109|MOR259-7P - 4|4 D2.1 olfactory receptor 1332, pseudogene 1 pseudo 320342 4931432P07Rik - - 10|10 RIKEN cDNA 4931432P07 gene protein-coding 105245645 Gm41073 - - 13 D2.2|13 predicted gene, 41073 pseudo 670926 Vmn2r-ps69 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 69 pseudo 245525 Mm.166749 NM_172931 ENSMUSG00000045802 Hsf3 B230358A15Rik|HSF 3|HSTF 3 - X|X C3 heat shock transcription factor 3 protein-coding 102636639 XR_375038 Gm33648 - - 2 G1|2 predicted gene, 33648 ncRNA 72074 Mm.23165 NM_028085 ENSMUSG00000030909 Anks4b 2010013E14Rik|AI956809|Harp - 7 F2|7 64.45 cM ankyrin repeat and sterile alpha motif domain containing 4B protein-coding 100416374 Gm18080 - - 14|14 C3 ribosomal protein S8 pseudogene pseudo 100504502 Gm14633 - - X|X 30.06 cM 40S ribosomal protein S23-like pseudo 665258 Gm7558 EG665258 - 3|3 A3 ribosomal protein L3 pseudogene pseudo 52780 D9Mgc47e EL2 - - DNA segment, Chr 9, MRC UK Mouse Genome Centre 47 expressed unknown 100504527 Mm.341797 Gm10374 - - 11|11 predicted gene 10374 ncRNA 545557 Mm.331261 XR_375896 Gm12474 - - 3 F2.2|3 predicted gene 12474 ncRNA 70024 Mm.23828 NM_027290 ENSMUSG00000026669 Mcm10 2410041F14Rik|AU018508|C330019M07Rik|C79164 - 2|2 A1 minichromosome maintenance 10 replication initiation factor protein-coding 229363 Mm.331051 NM_001033300 ENSMUSG00000027823 Gmps 670032|AA591640|AI047208|Gm9479 - 3|3 E1 guanine monophosphate synthetase protein-coding 404575 AL118134 - - - expressed sequence AL118134 unknown 108511957 Hebp1r3 - - 6 G1 Hebp1R3 erythroid cis-regulatory module biological-region 100504469 Mm.484520 Gm20242 - - 14|14 16.8 cM predicted gene, 20242 unknown 109718 Pol7 Pol-7 - - viral polymerase 7 protein-coding 105245560 Gm16125 - - 13|13 40.15 cM predicted gene 16125 pseudo 100034875 Hrtfm3 - - 4 20.0 cM heart failure modifier 3 unknown 62761 D17Mit180 - - 17 26.71 cM DNA segment, Chr 17, Massachusetts Institute of Technology 180 unknown 100034782 Krcn1 Krcn - 17 18.31 cM keratoconus 1 unknown 74970 Mm.491044 NR_046279 ENSMUSG00000109816 4930483O08Rik - - 7|7 F3 RIKEN cDNA 4930483O08 gene ncRNA 110580 Tcra-V11.5 - - - T cell receptor alpha, variable 11.5 other 100039292 Gm12142 - - 11|11 A5 predicted gene 12142 pseudo 22376 Mm.4735 NM_009515 ENSMUSG00000031165 Was U42471|Wasp - X A1.1|X 3.65 cM Wiskott-Aldrich syndrome protein-coding 56727 Mm.158200 NM_019977 ENSMUSG00000022613 Miox 0610009I10Rik|AI314022|Aldrl6|C85427|RSOR - 15|15 E3 myo-inositol oxygenase protein-coding 68737 Mm.63979 NM_144524 ENSMUSG00000021257 Angel1 1110030H02Rik|mKIAA0759 - 12|12 D2 angel homolog 1 protein-coding 277744 Mm.33952 NM_001033374 ENSMUSG00000070637 Srarp Gm694 - 4|4 D3 steroid receptor associated and regulated protein protein-coding 102636258 XR_390365 Gm11802 - - 4 A1|4 3.04 cM predicted gene 11802 ncRNA 102638421 XR_878387 Gm34992 - - 1 D|1 predicted gene, 34992 ncRNA 105246812 Gm42036 - - 8|8 predicted gene, 42036 ncRNA 56190 Mm.485782 NM_019547 ENSMUSG00000027510 Rbm38 Rnpc1|Seb4|Seb4l - 2|2 H3 RNA binding motif protein 38 protein-coding 75386 Mm.384855 4930599A14Rik - - 1|1 RIKEN cDNA 4930599A14 gene protein-coding 111767 Iapls3-5 - - - intracisternal A particle, lymphocyte specific 3-5 other 100416241 Gm17996 - - 8|8 C4 ribosomal protein L3 pseudogene pseudo 102238524 Gm29818 - - 12 B3|12 polymerase (RNA) II (DNA directed) polypeptide K pseudogene pseudo 26432 Mm.79983 NM_011961 ENSMUSG00000032374 Plod2 D530025C14Rik|LH2|Plod-2 - 9 E3.3|9 48.4 cM procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 protein-coding 21771 Mm.10665 NM_011574 ENSMUSG00000041438 Utp4 Cirh1a|Cirhin|Naic|Teg-292|Tex292 - 8|8 D3 UTP4 small subunit processome component protein-coding 673094 Mm.423040 NM_025584 Cd99 1110061M03Rik|2410026K10Rik|D4|Pilr-l|pilr-1 - 4|4 CD99 antigen protein-coding 625811 Gm6627 EG625811 - 10|10 B3 Ewing sarcoma breakpoint region 1 pseudogene pseudo 61138 D9Mit329 - - 9 24.33 cM DNA Segment, Chr 9 Massachusetts Institute of Technology 329 unknown 50926 Mm.389579 NM_016690 ENSMUSG00000029328 Hnrnpdl AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL - 5 E4|5 48.46 cM heterogeneous nuclear ribonucleoprotein D-like protein-coding 12371 Mm.88829 NM_015733 ENSMUSG00000028914 Casp9 AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6 - 4|4 E1 caspase 9 protein-coding 53995 D16Jhu35 410I21.T7 - 16 55.16 cM DNA segment, Chr 16, Johns Hopkins University 35 unknown 666389 Gm12447 - - 4|4 B1 predicted gene 12447 pseudo 16019 Mm.304472 Ighm AI326478|Igh-6|Igh-M|Igh6|Igm|muH - 12 F1|12 62.1 cM immunoglobulin heavy constant mu other 100042410 Trav7d-2 EG673730|Gm16483 - 14|14 C2 T cell receptor alpha variable 7D-2 other 102637288 LOC102637288 - - X D SNRPN upstream reading frame protein pseudogene pseudo 666528 Mm.290718 NM_001099277 ENSMUSG00000078796 Zfp541 EG666528|Znf541 - 7|7 A2 zinc finger protein 541 protein-coding 98082 C85939 - - - expressed sequence C85939 unknown 13858 Mm.318250 NM_007943 ENSMUSG00000028552 Eps15 2410112D09Rik - 4|4 C7 epidermal growth factor receptor pathway substrate 15 protein-coding 101533 Mm.19942 NM_028660 ENSMUSG00000047884 Klk9 1200016C12Rik|AI324041 - 7 B3|7 28.26 cM kallikrein related-peptidase 9 protein-coding 100418106 Gm15374 - - 1 D|1 44.53 cM UDP glycosyltransferase 1 family, polypeptide A10 pseudogene pseudo 111918 Iapls3-52 - - - intracisternal A particle, lymphocyte specific, probe 3-52 other 666396 Gm8082 EG666396 - 14|14 C1 predicted gene 8082 protein-coding 111178 Ryk-ps1 Ryk-2|Rykl1 - 12 A2|12 receptor-like tyrosine kinase, pseudogene 1 pseudo 16462 jdf - - - juvenile development and fertility unknown 60946 DXMit46 - - X 34.69 cM DNA segment, Chr X, Massachusetts Institute of Technology 46 unknown 12862 Mm.43824 NM_009943 ENSMUSG00000030785 Cox6a2 CoxVIaH|VIaH - 7 F3|7 70.04 cM cytochrome c oxidase subunit VIa polypeptide 2 protein-coding 66180 Mm.4940 NM_176830 ENSMUSG00000006931 P3h4 1110036O03Rik|AI413214|Leprel4|Sc65 - 11|11 D prolyl 3-hydroxylase family member 4 (non-enzymatic) protein-coding 12799 Mm.15711 NM_009923 ENSMUSG00000006782 Cnp CNPase|Cnp-1|Cnp1 - 11 D|11 63.47 cM 2',3'-cyclic nucleotide 3' phosphodiesterase protein-coding 268515 Mm.309498 NM_198423 ENSMUSG00000039741 Bahcc1 B930044J06|BC060615 - 11|11 E2 BAH domain and coiled-coil containing 1 protein-coding 18193 Mm.168965 NM_008739 ENSMUSG00000021488 Nsd1 AI528500|KMT3B - 13|13 B1 nuclear receptor-binding SET-domain protein 1 protein-coding 21200 T(5;11)542Ct T542Ct - - reciprocal translocation, Chr 5 and 11, Cattanach 542 other 100416184 Gm13367 - - 2|2 A2 predicted gene 13367 pseudo 105246375 Gm41671 - - 18|18 predicted gene, 41671 ncRNA 108168113 Gm46439 - - 13 B3|13 predicted gene, 46439 pseudo 67978 Mm.1158 NM_026486 Tctn2 4432405B04Rik|Tect2 - 5|5 F tectonic family member 2 protein-coding 76213 Mm.352212 6530406A20Rik - - 12|12 RIKEN cDNA 6530406A20 gene protein-coding 245707 Rvm - - - retinal vascular mass unknown 320203 Mm.245636 NM_177100 ENSMUSG00000050334 C130071C03Rik 2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1 - 13|13 C3 RIKEN cDNA C130071C03 gene ncRNA 61603 D9Mit263 - - 9 42.32 cM DNA segment, Chr 9, Massachusetts Institute of Technology 263 unknown 12380 Mm.29163 NM_009817 ENSMUSG00000021585 Cast - - 13|13 C1 calpastatin protein-coding 360072 D17Jcs83 - - - DNA segment, Chr 17, John C. Schimenti 83 unknown 15161 Mm.491126 NM_008224 ENSMUSG00000031386 Hcfc1 AW060991|HCF|HCF1 - X A7.3|X 37.52 cM host cell factor C1 protein-coding 102631953 XR_392471 ENSMUSG00000101060 Gm29565 CH36-145F11.1 - Y D|Y predicted gene 29565 ncRNA 102635378 XR_378851 Gm32735 - - 8 A3|8 predicted gene, 32735 ncRNA 75047 4930504B16Rik - - 19|19 RIKEN cDNA 4930504B16 gene protein-coding 101056029 LOC101056029 - - 14 C1 60S ribosomal protein L9 pseudogene pseudo 574418 Mm.459165 NM_001025371 ENSMUSG00000046110 Serinc4 - - 2|2 E5 serine incorporator 4 protein-coding 75811 Mm.56451 NM_001081096 ENSMUSG00000028492 Saxo1 4930500O09Rik|Fam154a - 4|4 C4 stabilizer of axonemal microtubules 1 protein-coding 17062 Ly6 Ala-1|DAG|H9/25|Ly-27|Ly-6|Ly27 - - lymphocyte antigen 6 complex other 75619 Mm.30965 NM_172422 ENSMUSG00000025962 Fastkd2 2810421I24Rik - 1|1 C2 FAST kinase domains 2 protein-coding 102638388 XR_378890 1700015I17Rik Gm45565 - 8|8 A4 RIKEN cDNA 1700015I17 gene ncRNA 20766 Mm.57092 NM_011478 ENSMUSG00000045539 Sprr3 SPR3 - 3 F1|3 40.14 cM small proline-rich protein 3 protein-coding 61903 D2Mit444 - - 2 59.46 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 444 unknown 105244831 XM_017321857 Gm40367 - - 6 B2.3|6 predicted gene, 40367 protein-coding 110495 Tcra-V3.2 - - - T cell receptor alpha, variable 3.2 other 381668 Mm.348782 NM_028596 ENSMUSG00000043323 Fbrsl1 2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545 - 5|5 F fibrosin-like 1 protein-coding 112163568 Mm.442065 BB173125 - - - expressed sequence BB173125 protein-coding 100043799 Rps13-ps6 Gm11654 - 2|2 G1 ribosomal protein S13, pseudogene 6 pseudo 104207 Mcpt3 Mcp-3|mMCP-3 - - mast cell protease 3 protein-coding 108167391 XR_882372 LOC108167391 - - - uncharacterized LOC108167391 ncRNA 59092 Mm.286394 NM_021567 ENSMUSG00000023495 Pcbp4 1200003L19Rik|AlphaCP-4 - 9|9 F1 poly(rC) binding protein 4 protein-coding 100504520 Gm15400 - - 3|3 54.6 cM 60S ribosomal protein L15-like pseudo 108168343 XR_001782190 Gm46598 - - 17 E4|17 predicted gene, 46598 ncRNA 109667 Brp1 A1|Brp-1 - - brain protein 1 protein-coding 100038813 Slt4 - - - susceptibility to spontaneously occurring lung cancer 4 unknown 436058 Gm5743 EG436058 - 8|8 D3 carboxylesterase 2E pseudogene pseudo 22390 Mm.287173 NM_009516 ENSMUSG00000031016 Wee1 Wee1A - 7|7 E3 WEE 1 homolog 1 (S. pombe) protein-coding 102636972 Gm33896 - - 4|4 predicted gene, 33896 ncRNA 30937 Mm.234441 NM_144799 ENSMUSG00000057604 Lmcd1 AW455500|AW553074|dyxin - 6|6 E3 LIM and cysteine-rich domains 1 protein-coding 100040141 Gm2623 - - 5|5 B1 ribosomal protein L37 pseudogene pseudo 100502698 Mm.327319 NM_172615 ENSMUSG00000035629 Rubcn 1700021K19Rik|5330403K09|Rubicon|mKIAA0226 - 16|16 B3 RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein protein-coding 58172 Mm.339676 NM_021372 ENSMUSG00000049800 Sertad2 AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127 - 11|11 A3.1 SERTA domain containing 2 protein-coding 18038 Mm.300795 NM_010909 ENSMUSG00000042419 Nfkbil1 Def-7|IKBL - 17 B1|17 18.6 cM nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1 protein-coding 66308 Mm.291109 NM_025479 ENSMUSG00000012429 Mplkip 2810021B07Rik|C330007M08Rik|Ttdn1 - 13|13 A2 M-phase specific PLK1 intereacting protein protein-coding 767814 Mm.371752 NR_033468 ENSMUSG00000074783 AU019990 - - 2 F2|2 expressed sequence AU019990 ncRNA 381778 Mm.333118 Igkv16-104 Gm1067|rf - 6|6 C1 immunoglobulin kappa variable 16-104 other 100312512 Vmn1r-ps67 - - 7 A1|7 7.49 cM vomeronasal 1 receptor, pseudogene 67 pseudo 67784 Mm.3085 NM_026376 ENSMUSG00000030123 Plxnd1 6230425C21Rik|b2b1863Clo|b2b553Clo - 6|6 E3 plexin D1 protein-coding 98685 Mm.289373 NM_026876 ENSMUSG00000053286 Trmt1l 1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l - 1|1 G1 tRNA methyltransferase 1 like protein-coding 105244523 XR_867544 Gm40117 Gm42956 - 3 F2.2|3 predicted gene, 40117 ncRNA 108167475 Gm46007 - - 7 A3|7 predicted gene, 46007 pseudo 73412 Mm.279939 NM_181591 ENSMUSG00000041138 Nme8 1700056P15Rik|Sptrx-2|Txndc3 - 13 A2|13 7.0 cM NME/NM23 family member 8 protein-coding 492845 Odsm1 - - 18 40.14 cM ocular degeneration with sex reversal modifier 1 unknown 28060 D19Wsu44e - - - DNA segment, Chr 19, Wayne State University 44, expressed unknown 18552 Mm.3401 NM_001163144 ENSMUSG00000024713 Pcsk5 PC5|PC6|SPC6|b2b1549Clo|b2b585Clo - 19 B|19 12.86 cM proprotein convertase subtilisin/kexin type 5 protein-coding 105244376 Gm39995 - - 2|2 predicted gene, 39995 ncRNA 21899 Mm.42146 NM_011604 ENSMUSG00000051498 Tlr6 - - 5 C3.1|5 33.54 cM toll-like receptor 6 protein-coding 434179 Mm.284947 NM_001008427 ENSMUSG00000069727 Zfp975 EG434179|Gm5595|mszf88 - 7 B3|7 zinc finger protein 975 protein-coding 102633888 XM_006519771 Gm31606 - - 14 B|14 predicted gene, 31606 protein-coding 102634208 XR_001779764 Gm31848 - - 10 B1|10 predicted gene, 31848 ncRNA 667335 Mm.380219 NR_036696 ENSMUSG00000106779 Gm8579 EG667335 - 6 A1|6 spermatogenesis associated glutamate (E)-rich protein 4a pseudogene pseudo 102638178 XR_386037 Gm34804 - - 18 A1|18 predicted gene, 34804 ncRNA 12560 Mm.4658 NM_007665 ENSMUSG00000061048 Cdh3 AI385538|Cadp|Cdhp|P-cadherin|Pcad - 8 D3|8 53.16 cM cadherin 3 protein-coding 22127 Mm.358644 NM_009440 ENSMUSG00000031329 Tsx AV207184 - X D|X 46.12 cM testis specific X-linked gene protein-coding 105244356 Gm39981 - - 2|2 predicted gene, 39981 ncRNA 241915 Mm.233173 NM_153421 ENSMUSG00000037652 Phc3 E030046K01Rik|Edr3|Hph3 - 3|3 A3 polyhomeotic 3 protein-coding 13488 Mm.54161 NM_010076 ENSMUSG00000021478 Drd1 C030036C15Rik|Drd-1|Drd1a|Gpcr15 - 13 B1|13 28.4 cM dopamine receptor D1 protein-coding 320544 Mm.20047 D930030I03Rik - - 16|16 RIKEN cDNA D930030I03 gene protein-coding 12468 Mm.289900 NM_007638 ENSMUSG00000030007 Cct7 AA408524|AL022769|Ccth|Cctz - 6|6 C3 chaperonin containing Tcp1, subunit 7 (eta) protein-coding 101055674 Gm29709 - - 12|12 predicted gene, 29709 pseudo 62945 D11Mit325 - - 11 51.88 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 325 unknown 102466915 NR_106096 ENSMUSG00000099140 Mir7237 Gm27482|mmu-mir-7237 - 8|8 E1 microRNA 7237 ncRNA 69355 Mm.84337 NR_040579 ENSMUSG00000100314 1700010J16Rik - - 10|10 D2 RIKEN cDNA 1700010J16 gene ncRNA 53960 Mm.482230 AA066038 - - 16 11.17 cM EST AA066038 unknown 100534370 LOC100534370 - - 3|3 A1 peptidylprolyl isomerase D (cyclophilin D) pseudogene pseudo 224111 Mm.31275 NM_177633 ENSMUSG00000053774 Ubxn7 A630090P18|AI196514|Ubxd7|mKIAA0794 - 16|16 B3 UBX domain protein 7 protein-coding 545873 Gm5883 EG545873|Ppia-ps6_1344.1 - 6|6 F2 peptidylprolyl isomerase A pseudogene 6_1344.1 pseudo 666789 Gm8289 EG666789 - X|X F2 predicted gene 8289 pseudo 105244065 Gm39744 - - 1|1 predicted gene, 39744 protein-coding 26380 Mm.235550 NM_011934 ENSMUSG00000021255 Esrrb Err2|Errb|Estrrb|Nr3b2 - 12 D2|12 40.49 cM estrogen related receptor, beta protein-coding 102635216 XR_001784436 Gm32611 - - 4 D2.2|4 predicted gene, 32611 protein-coding 100417361 Gm18560 - - 7|7 D3 ubiquitin specific peptidase 46 pseudogene pseudo 76691 2010110E17Rik - - 8|8 RIKEN cDNA 2010110E17 gene protein-coding 211961 Mm.392310 NM_001167777 ENSMUSG00000045215 Asxl3 C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945 - 18|18 A2 additional sex combs like 3, transcriptional regulator protein-coding 105247256 XR_882095 Gm42385 - - 7 B5|7 predicted gene, 42385 ncRNA 330479 Mm.235156 D830036C21Rik Gm842 - 7|7 A3 RIKEN cDNA D830036C21 gene protein-coding 223927 Mm.243718 NM_177631 ENSMUSG00000053508 Gtsf2 - - 15|15 F3 gametocyte specific factor 2 protein-coding 102634877 XR_001781590 Gm32355 - - 15 D3|15 predicted gene, 32355 ncRNA 19660 Mm.12825 NM_009034 ENSMUSG00000032454 Rbp2 Crbp-2|CrbpII|Rbp-2 - 9 E3.3|9 51.37 cM retinol binding protein 2, cellular protein-coding 102638153 Mm.289648 XR_381940 ENSMUSG00000113733 Gm34785 - - 12 F1|12 predicted gene, 34785 ncRNA 627782 Mm.305432 NM_001037930 ENSMUSG00000086404 Gm6787 EG627782 - X|X A1.1 proteasome (prosome, macropain) subunit, beta type 7 pseudogene pseudo 105743 AA516936 - - - expressed sequence AA516936 unknown 11692 Mm.28124 NM_023040 ENSMUSG00000040888 Gfer Alr|ERV1 - 17 A3.3|17 12.48 cM growth factor, augmenter of liver regeneration protein-coding 67344 Mm.111346 NM_026100 ENSMUSG00000028523 Tctex1d1 1700055O19Rik - 4|4 C6 Tctex1 domain containing 1 protein-coding 76947 Mm.275265 NM_001085493 ENSMUSG00000050323 Ndufaf6 2310030N02Rik - 4|4 A1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 protein-coding 245671 Mm.260751 NM_173780 ENSMUSG00000041649 Klf8 BKLF3|ZNF74 - X|X F3 Kruppel-like factor 8 protein-coding 100040894 Mm.481748 NM_001166601 ENSMUSG00000094714 Gm16430 EG666120 - X|X A5 predicted gene 16430 protein-coding 53876 Mm.327386 NM_017388 Ear3 Rnase3|mR3 - - eosinophil-associated, ribonuclease A family, member 3 protein-coding 30004 D10Jhu8 - - - DNA segment, Chr 10, Johns Hopkins University 8 unknown 328795 Mm.387930 NM_177823 ENSMUSG00000042345 Ubash3a 5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1 - 17|17 A3.3 ubiquitin associated and SH3 domain containing, A protein-coding 75668 Mm.374836 NM_145216 ENSMUSG00000034209 Rasl10a 2210403B10Rik|AI852688 - 11|11 A1 RAS-like, family 10, member A protein-coding 242553 Mm.440211 NM_172872 ENSMUSG00000035407 Kank4 AU021071|Ankrd38|BC060737|C130031J23 - 4|4 C6 KN motif and ankyrin repeat domains 4 protein-coding 100416690 Gm18197 - - 7|7 E1 zinc finger protein 397 pseudogene pseudo 665976 Mm.491067 NR_033648 Vmn2r-ps129 - - 17|17 A3.3 vomeronasal 2, receptor, pseudogene 129 pseudo 109434 Scc8 - - 8 5.91 cM colon tumor susceptibility 8 unknown 16289 In(5)2Rk-p In(5)2Rk|In2Rk - - inversion, Chr 5, Roderick 2, proximal other 72640 Mm.275154 NM_001029890 ENSMUSG00000074480 Mex3a 2700083E18Rik|Gm411|Rkhd4 - 3|3 F1 mex3 RNA binding family member A protein-coding 100861749 XR_001782945 LOC100861749 - - - protein SFI1 homolog pseudo 100862088 XM_006536336 Gm21466 - - X A3.1|X predicted gene, 21466 protein-coding 85208 D11Mit124 - - 11 62.92 cM DNA segment, Chr 11, Massachusetts Institute of Technology 124 unknown 22153 Mm.7420 NM_009451 ENSMUSG00000062591 Tubb4a AI325297|M(beta)4|Tubb|Tubb4 - 17 D|17 29.66 cM tubulin, beta 4A class IVA protein-coding 103653 AI256354 - - - expressed sequence AI256354 unknown 105245522 XR_873535 Gm40968 - - 13 B1|13 predicted gene, 40968 ncRNA 21257 T(7;14)2Iem T2Iem - - reciprocal translocation, Chr 7 and 14, Inst of Experimental Medicine Leningrad 2 other 260302 Mm.119479 NM_173048 ENSMUSG00000020740 Gga3 C230037M19Rik|mKIAA0154 - 11|11 E2 golgi associated, gamma adaptin ear containing, ARF binding protein 3 protein-coding 71766 Mm.196137 NM_027911 ENSMUSG00000010205 Raver1 1300006N24Rik|AA050359|mKIAA1978 - 9|9 A3 ribonucleoprotein, PTB-binding 1 protein-coding 108695205 LOC108695205 - - X A6 ES cell cis-regulatory motifs 6b and 6c biological-region 105242704 Gm38848 - - 6|6 predicted gene, 38848 ncRNA 780940 Ighv1-60 - - 12|12 F2 immunoglobulin heavy variable V1-60 pseudo 665056 Gm7468 EG665056 - 6|6 G3 predicted gene 7468 pseudo 100036119 Spmd2 - - - spermatogenesis defect 2 unknown 105243647 Mm.406381 XR_880359 Gm11770 - - 11 E2|11 83.96 cM predicted gene 11770 ncRNA 100036313 Gnf3 - - 2 89.27 cM growth and fatness 3 unknown 100042025 XM_001476707 Gapdh-ps15 Gm20899 - Y|Y B glyceraldehyde-3-phosphate dehydrogenase, pseudogene 15 protein-coding 100124482 NR_030551 ENSMUSG00000076956 Mir297a-3 Mirn297a-3 - 2 A1|2 microRNA 297a-3 ncRNA 109280020 LOC109280020 Mm154 - - VISTA enhancer mm154 biological-region 76219 Mm.482965 NM_029541 ENSMUSG00000048355 Arxes1 6530401D17Rik|Spc22/23|Spcs3 - X|X F1 adipocyte-related X-chromosome expressed sequence 1 protein-coding 111791 Iapls2-34 - - - intracisternal A particle, lymphocyte specific 2-34 other 61372 D4Mit209 - - 4 84.59 cM DNA segment, Chr 4, Massachusetts Institute of Technology 209 unknown 105242901 XR_881944 Gm38984 - - 7 B1|7 predicted gene, 38984 ncRNA 93714 Mm.247203 NM_033589 ENSMUSG00000103793 Pcdhga6 - - 18|18 B3 protocadherin gamma subfamily A, 6 protein-coding 110535 Fdpsl9 - - - farnesyl diphosphate synthetase-like 9 protein-coding 100417303 Gm18517 - - 13|13 C3 crumbs homolog 1 pseudogene pseudo 100526515 NR_037204 ENSMUSG00000080356 Mir1247 mir-1247|mmu-mir-1247 - 12 F1|12 60.56 cM microRNA 1247 ncRNA 667779 Rpl30-ps8 EG667779|Gm8808 - 12|12 E ribosomal protein L30, pseudogene 8 pseudo 110935 Mm.220823 NM_134157 ENSMUSG00000006269 Atp6v1b1 AW208839|Atp6b1|D630003L15|D630030L16Rik|D630039P21Rik|Vpp-3|Vpp3 - 6 C3|6 35.94 cM ATPase, H+ transporting, lysosomal V1 subunit B1 protein-coding 75546 Mm.71176 NR_138576 ENSMUSG00000099808 1700019P21Rik - - 1|1 E4 RIKEN cDNA 1700019P21 gene ncRNA 638252 Gm7232 EG638252 - 14|14 E2.1 heat shock protein 8 pseudogene pseudo 102639289 XR_380651 Gm35636 - - 10 C1|10 predicted gene, 35636 ncRNA 102640751 Mm.421246 XR_379913 Gm36745 - - 9 F3|9 predicted gene, 36745 ncRNA 14563 Mm.4744 NM_008109 ENSMUSG00000038259 Gdf5 BMP-14|Cdmp-1|bp|brp - 2 H1|2 77.26 cM growth differentiation factor 5 protein-coding 319781 Mm.92891 NR_040272 ENSMUSG00000085982 9530051G07Rik - - X|X F3 RIKEN cDNA 9530051G07 gene ncRNA 111309 Hmgn1-rs14 Hmg14-rs14 - - high mobility group nucleosomal binding domain 1, related sequence 14 pseudo 70550 Mm.482937 NR_033596 ENSMUSG00000081793 5730416F02Rik - - X|X D capping protein (actin filament), gelsolin-like pseudogene pseudo 404437 Olfr861-ps1 GA_x5J8B7W6RL5-13004417-13003354|MOR143-3_p - 9|9 A3 olfactory receptor 861, pseudogene 1 pseudo 98752 Mm.1850 NM_145141 ENSMUSG00000038421 Fcrla BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX - 1|1 H3 Fc receptor-like A protein-coding 100312509 Vmn1r-ps63 Vmn1r-p63 - 7 A1|7 vomeronasal 1 receptor, pseudogene 63 pseudo 102638253 XR_866486 Gm34861 - - 2 C3|2 predicted gene, 34861 ncRNA 62334 D6Mit247 - - 6 35.94 cM DNA segment, Chr 6, Massachusetts Institute of Technology 247 unknown 114061 Axtrb3 - - - anxiety-related behavior 3 unknown 105243893 XR_865299 Gm39614 - - 1 A5|1 predicted gene, 39614 ncRNA 192662 Mm.30016 NM_133796 ENSMUSG00000025132 Arhgdia 5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1 - 11|11 E2 Rho GDP dissociation inhibitor (GDI) alpha protein-coding 53135 283n3-T7 - - - DNA segment, 283n3-T7 unknown 102864 DXMgi26 AI043245 - - DNA Segment, Chr X, Mouse Genome Informatics 26 unknown 105242662 XR_869097 Gm38815 - - 6 B3|6 predicted gene, 38815 ncRNA 381886 Mm.377894 NM_205821 Mrgpra6 MrgA6 - 7|7 B3 MAS-related GPR, member A6 protein-coding 97215 Mm.159842 C77266 - - - expressed sequence C77266 unknown 67651 Mm.55930 NR_045809 ENSMUSG00000115324 4930527F14Rik - - 14|14 C1 RIKEN cDNA 4930527F14 gene ncRNA 106780821 Obox4-ps37 Gm20664 - 7 A1|7 8.3 cM oocyte specific homeobox 4, pseudogene 37 pseudo 105245668 XM_011244814 Gm26650 - - 14 A1|14 predicted gene, 26650 protein-coding 101056119 Gm29783 - - 10 B5.3|10 predicted gene, 29783 pseudo 18188 Mm.8074 NM_008738 ENSMUSG00000039481 Nrtn NTN - 17 D|17 29.49 cM neurturin protein-coding 327872 NR_131129 ENSMUSG00000085453 Gm12018 - - 11|11 A3.1 predicted gene 12018 ncRNA 637578 Mm.441727 NM_001270644 ENSMUSG00000095022 Gm20765 - - 10|10 D1 predicted gene, 20765 protein-coding 102637835 XR_380868 Gm34545 - - 10 D2|10 predicted gene, 34545 ncRNA 102639096 Gm28929 - - 1|1 predicted gene 28929 pseudo 14130 Mm.425062 NM_010187 ENSMUSG00000026656 Fcgr2b AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII - 1 H3|1 78.02 cM Fc receptor, IgG, low affinity IIb protein-coding 100042076 Gm13742 - - 2|2 D predicted gene 13742 pseudo 102643257 LOC102643257 - - - uncharacterized LOC102643257 ncRNA 22608 Mm.258204 NM_011732 ENSMUSG00000028639 Ybx1 1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a - 4|4 D2.1 Y box protein 1 protein-coding 66086 Mm.42072 NM_025345 ENSMUSG00000022677 Fopnl 0610037P05Rik - 16|16 A1 Fgfr1op N-terminal like protein-coding 97584 C76537 - - - expressed sequence C76537 unknown 100502908 NM_001195717 Gm12034 - - 11|11 A3.1 ribosomal protein S17 pseudogene pseudo 239852 Mm.245045 NM_178720 ENSMUSG00000064310 Zpld1 9430016A21Rik - 16|16 C1.1 zona pellucida like domain containing 1 protein-coding 102634543 Mm.387028 Gm29128 - - 1|1 predicted gene 29128 ncRNA 319497 Mm.438218 E230020A03Rik - - 7|7 RIKEN cDNA E230020A03 gene protein-coding 105242699 XR_869205 Gm38845 - - 6 C3|6 predicted gene, 38845 ncRNA 213068 Mm.132299 NM_172514 ENSMUSG00000036944 Tmem71 AI661017|E430024D12 - 15|15 D2 transmembrane protein 71 protein-coding 110800 Camkl - - - calcium/calmodulin dependent protein kinase-like protein-coding 105244701 XR_868220 Gm40260 - - 5 A1|5 predicted gene, 40260 ncRNA 74316 Mm.25719 NM_028863 ENSMUSG00000021241 Isca2 0710001C05Rik|5730594E03Rik|Hbld1 - 12|12 D1 iron-sulfur cluster assembly 2 protein-coding 100503609 Mm.457937 NM_001347042 ENSMUSG00000109588 Lnp1 Gm19797 - 16 C1.1|16 34.22 cM leukemia NUP98 fusion partner 1 protein-coding 22190 Mm.331 NM_019639 ENSMUSG00000008348 Ubc 2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb - 5 G1.1|5 64.18 cM ubiquitin C protein-coding 102635037 XR_376984 Gm32474 - - 5 C3.1|5 predicted gene, 32474 ncRNA 105245585 LOC105245585 - - 13 C3 non-histone chromosomal protein HMG-17 pseudogene pseudo 100035429 Brwt2 - - - brain weight 2 unknown 14680 Mm.440746 NM_010307 ENSMUSG00000024524 Gnal 2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf - 18 E1|18 39.85 cM guanine nucleotide binding protein, alpha stimulating, olfactory type protein-coding 16889 Mm.157545 NM_021460 ENSMUSG00000024781 Lipa AA960673|Lal|Lip-1|Lip1 - 19|19 C1 lysosomal acid lipase A protein-coding 62991 D17Mit258 - - 17 50.97 cM DNA segment, Chr 17, Massachusetts Institute of Technology 258 unknown 67268 Mm.489605 NM_026064 ENSMUSG00000024048 Myl12a 2900073G15Rik|AI838292|C80200 - 17|17 E1.3 myosin, light chain 12A, regulatory, non-sarcomeric protein-coding 72137 Mm.288734 NM_028118 ENSMUSG00000026988 Wdsub1 1700048E19Rik|2610014F08Rik - 2|2 C1.1 WD repeat, SAM and U-box domain containing 1 protein-coding 545472 Gm14121 - - 2|2 G3 BTB (POZ) domain containing 1 pseudogene pseudo 102467458 n-TAcgc9 n-Ta28 - 13 A3.1|13 nuclear encoded tRNA alanine 9 (anticodon CGC) tRNA 667982 Gm8911 EG667982 - 10|10 B1 isopentenyl-diphosphate delta isomerase pseudogene pseudo 61313 D3Mit147 - - 3 74.02 cM DNA segment, Chr 3, Massachusetts Institute of Technology 147 unknown 257779 Olfr439-ps1 EG257779|GA_x5J8B7W6337-1221999-1222591|Gm5006 - 6 B2.1|6 olfactory receptor 439, pseudogene 1 pseudo 628637 Gm14758 - - X A7.3|X predicted gene 14758 pseudo 326618 Mm.295124 NM_001001491 ENSMUSG00000031799 Tpm4 2610528G24Rik|Tpm4.2|Tpm4.2cy - 8|8 B3.3 tropomyosin 4 protein-coding 22036 Mm.297870 NM_011634 ENSMUSG00000032586 Traip Trip - 9 F1|9 59.07 cM TRAF-interacting protein protein-coding 105243312 XR_879288 Gm39270 - - 8 E1|8 predicted gene, 39270 ncRNA 101055905 LOC101055905 - - X F1 cell division cycle protein 20 homolog pseudo 21123 T(2;15)45Ad T45Ad - - reciprocal translocation, Chr 2 and 15, Adler 45 other 214764 Mm.174044 NM_145995 ENSMUSG00000039990 Edrf1 2700050L05Rik|AU022667|AW558805 - 7|7 F3 erythroid differentiation regulatory factor 1 protein-coding 27698 30B5.T7 - - - DNA segment, 30B5.T7 (Roswell Park) unknown 69156 Mm.11827 NM_026965 ENSMUSG00000021773 Comtd1 1810030M08Rik|MT773 - 14|14 A3 catechol-O-methyltransferase domain containing 1 protein-coding 53163 175N10-Sp6 - - - DNA segment, 175N10-Sp6 unknown 319678 Mm.392372 D430040D24Rik - - 1|1 B RIKEN cDNA D430040D24 gene unknown 672329 Igkvk33-85 - - 6|6 Ig kappa chain variable region other 113868 Mm.205266 NM_130864 ENSMUSG00000036138 Acaa1a Acaa|Acaa1|D9Ertd25e|PTL - 9 F3|9 71.33 cM acetyl-Coenzyme A acyltransferase 1A protein-coding 320405 Mm.259632 NM_153163 ENSMUSG00000017978 Cadps2 A230044C21Rik|Caps-2|Caps2|Cpd2 - 6|6 A3.1 Ca2+-dependent activator protein for secretion 2 protein-coding 102465180 NR_105770 ENSMUSG00000099141 Mir6352 Gm27481|mmu-mir-6352 - 1|1 C4 microRNA 6352 ncRNA 117590 Mm.207071 NM_080444 ENSMUSG00000038204 Asb10 Asb-10|BB137407 - 5|5 A3 ankyrin repeat and SOCS box-containing 10 protein-coding 227157 Mm.474049 NM_145143 ENSMUSG00000079550 Mpp4 Dlg6 - 1|1 C1.3 membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) protein-coding 100503986 Gm17227 - - 19|19 5.32 cM predicted gene 17227 ncRNA 239096 Mm.386871 NM_199470 ENSMUSG00000059674 Cdh24 1700040A22Rik - 14|14 C2 cadherin-like 24 protein-coding 100417015 Gm18363 - - 13|13 A2 calcyclin binding protein pseudogene pseudo 492991 Lscc1 - - 1 9.9 cM lung squamous cell carcinoma 1 unknown 751556 NR_030451 ENSMUSG00000076236 Mir682 Mirn682|mir-682|mmu-mir-682 - 13 C1|13 microRNA 682 ncRNA 60365 Mm.261972 NM_025875 ENSMUSG00000038374 Rbm8a 2310057C03Rik|AA673428|Rbm8 - 3|3 F2.1 RNA binding motif protein 8a protein-coding 100041251 Gm3234 - - 12 F1|12 predicted gene 3234 unknown 117606 Mm.41561 NM_172506 ENSMUSG00000022687 Boc 4732455C11|mFLJ00376 - 16|16 B4 biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein protein-coding 74291 1700092E16Rik - - 10|10 C1 RIKEN cDNA 1700092E16 gene unknown 638021 Gm13836 - - 5|5 F predicted gene 13836 pseudo 102638718 Gm35212 - - 5|5 predicted gene, 35212 pseudo 105244985 Gm40502 - - 8|8 predicted gene, 40502 ncRNA 62733 D18Mit187 - - 18 50.99 cM DNA segment, Chr 18, Massachusetts Institute of Technology 187 unknown 70428 Mm.335007 NM_027423 ENSMUSG00000034453 Polr3b 2700078H01Rik|A330032P03Rik|C85372|RPC2 - 10|10 C1 polymerase (RNA) III (DNA directed) polypeptide B protein-coding 100534290 LOC100534290 - - 19|19 A cDNA sequence BC014805 pseudogene pseudo 105245482 XR_873338 Gm40930 - - 13 A5|13 predicted gene, 40930 ncRNA 257911 Olfr892-ps1 MOR170-12 - 9|9 A5.1 olfactory receptor 892, pseudogene 1 pseudo 105285 AU021025 - - - expressed sequence AU021025 protein-coding 21112 T(2D;11B5)4Dn T(2;11)4Dn|T4Dn - - reciprocal translocation, Chr 2, cytogenetic band D; and Chr 11, cytogenetic band B5, Davisson 4 other 102467461 n-TAtgc6 n-Ta35 - X F1|X nuclear encoded tRNA alanine 6 (anticodon TGC) tRNA 102467614 n-TYgta5 n-Ty5 - 13 A3.1|13 nuclear encoded tRNA tyrosine 5 (anticodon GTA) tRNA 61866 D1Mit354 - - 1 80.32 cM DNA segment, Chr 1, Massachusetts Institute of Technology 354 unknown 359991 DXMgc129 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 129 unknown 105244450 XR_001783847 Gm40056 - - 3 D|3 predicted gene, 40056 ncRNA 61018 D6Mit140 - - 6 12.52 cM DNA segment, Chr 6, Massachusetts Institute of Technology 140 unknown 108197 Rap1a-ps1 - - - RAS related protein 1a, pseudogene 1 pseudo 100504203 Gm20111 - - 14|14 33.79 cM predicted gene, 20111 pseudo 74545 Mm.461587 9030417H13Rik - - 4|4 RIKEN cDNA 9030417H13 gene protein-coding 77340 9530022L04Rik - - 3|3 RIKEN cDNA 9530022L04 gene protein-coding 236937 Vcp-rs EG236937|Vcp-ps - X D|X 46.62 cM valosin containing protein, related sequence pseudo 21855 Mm.27393 NM_011591 ENSMUSG00000031158 Timm17b 17kDa|Sfc3|mTim17b - X A1.1|X 3.56 cM translocase of inner mitochondrial membrane 17b protein-coding 100503583 Mm.249437 NM_001256142 ENSMUSG00000094595 Fsbp - - 4 A1|4 5.11 cM fibrinogen silencer binding protein protein-coding 51957 D12Sut1e - - - DNA segment, Chr 12, Sutcliffe 1 expressed unknown 61621 D8Mit275 - - 8 66.4 cM DNA segment, Chr 8, Massachusetts Institute of Technology 275 unknown 107973 H2-T13l - - - histocompatibility 2, T region locus 13 like protein-coding 102634800 Gm32300 - - 13 A1|13 predicted gene, 32300 pseudo 66313 Mm.340955 NM_025481 ENSMUSG00000018363 Smurf2 2810411E22Rik|AI558114|AI649275 - 11|11 E1 SMAD specific E3 ubiquitin protein ligase 2 protein-coding 75075 Mm.437524 4930517O19Rik - - 14|14 RIKEN cDNA 4930517O19 gene unknown 100041268 Gm3242 - - 14 A1|14 predicted gene 3242 pseudo 100040866 Gm3011 - - 9|9 A3 ribosomal protein L7A pseudogene pseudo 19132 Mm.2477 NM_013639 ENSMUSG00000023484 Prph Prph1 - 15 F1|15 55.72 cM peripherin protein-coding 100415961 Gm6659 EG626268 - 17|17 B1 akirin 1 pseudogene pseudo 68338 Mm.247935 NM_026680 ENSMUSG00000103421 Golt1a 0610012C01Rik|Kiss1|metastatin - 1|1 E4 golgi transport 1A protein-coding 73576 Mm.45473 NR_045933 ENSMUSG00000084811 1700092E19Rik - - 13|13 A3.1 RIKEN cDNA 1700092E19 gene ncRNA 22704 Mm.1504 NM_009557 ENSMUSG00000051351 Zfp46 AI426962|Mlz-4|Zfp-46|Znf436 - 4 D3|4 68.34 cM zinc finger protein 46 protein-coding 667549 Gm8697 EG667549 - 18|18 D3 predicted gene 8697 pseudo 102638318 XR_865363 Gm16150 - - 1 B|1 16.64 cM predicted gene 16150 ncRNA 67755 Mm.166524 NM_026360 ENSMUSG00000030204 Ddx47 4930588A18Rik|C77285 - 6|6 G1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein-coding 665371 Gm7605 EG665371 - 17 A3.2|17 high mobility group box 1-like pseudogene pseudo 100039683 Gm13597 - - 2|2 C2 Tax1 (human T-cell leukemia virus type I) binding protein 3 pseudogene pseudo 195772 Mm.377231 NM_181855 Magea9-ps Mage-a9|Magea9 - X A7.3|X 37.29 cM melanoma antigen, family A, 9, pseudogene pseudo 353166 Mm.377890 NM_207021 ENSMUSG00000058349 Tas2r117 T2R17|Tas2r17|mGR17|mt2r54 - 6 G1|6 64.03 cM taste receptor, type 2, member 117 protein-coding 668738 XM_001003391 Frg2f6 EG668738|Gm9325 - 14|14 E2.3 FSHD region gene 2 family member 6 protein-coding 402738 B230308H17Rik - - 8|8 RIKEN cDNA B230308H17 gene protein-coding 102636217 Mm.182723 Gm26806 - - 13|13 predicted gene, 26806 ncRNA 13105 Mm.226708 NM_010006 ENSMUSG00000068086 Cyp2d9 Cyp2d|P450-2D - 15 E1|15 38.6 cM cytochrome P450, family 2, subfamily d, polypeptide 9 protein-coding 492833 Bmd15 - - - bone mineral density 15 unknown 77847 B230104F01Rik - - 19|19 B RIKEN cDNA B230104F01 gene protein-coding 653909 Mm.389687 C230098j07rik - - 5|5 F RIKEN cDNA C230098J07 gene unknown 100504616 Mm.451174 NR_038023 ENSMUSG00000087480 Gm15910 - - 10 D2|10 68.82 cM predicted gene 15910 ncRNA 100039177 Mm.422695 NM_001199936 ENSMUSG00000078675 Mup16 Mup6 - 4 B3|4 major urinary protein 16 protein-coding 790910 Mm.440410 NR_045873 Gm11201 - - 11 B5|11 predicted gene 11201 ncRNA 56434 Mm.28484 NM_019793 ENSMUSG00000032324 Tspan3 1700055K04Rik|TM4-A|Tm4sf8 - 9|9 B tetraspanin 3 protein-coding 102466214 NR_105964 ENSMUSG00000098904 Mir6998 Gm28024|mmu-mir-6998 - 2|2 B microRNA 6998 ncRNA 630086 Mm.333502 Trav12-1 Gm17011 - 14 27.41 cM|14 C2 T cell receptor alpha variable 12-1 other 54387 Mm.30098 NM_019434 ENSMUSG00000001150 Mcm3ap GANP|mKIAA0572 - 10|10 C1 minichromosome maintenance complex component 3 associated protein protein-coding 100043636 Mm.295569 NR_015519 ENSMUSG00000087107 AI662270 AW496474 - 11|11 C expressed sequence AI662270 ncRNA 233826 Mm.38348 NM_172744 ENSMUSG00000044702 Palb2 BC066140 - 7|7 F2 partner and localizer of BRCA2 protein-coding 108168825 XR_001783600 Gm46782 - - 2 H4|2 predicted gene, 46782 ncRNA 102465670 NR_106064 ENSMUSG00000099109 Mir7115 Gm27902|mmu-mir-7115 - 11|11 B3 microRNA 7115 ncRNA 100040018 Gmfg-ps Gm9835 - 6|6 A1 glia maturation factor, gamma, pseudogene pseudo 104119 H48 H-48 - - histocompatibility 48 protein-coding 100043627 Mm.388589 NM_001199309 ENSMUSG00000056885 Gm4559 - - 7 F5|7 predicted gene 4559 protein-coding 110003 Pfn1-rs - - - prolifin 1, related sequence protein-coding 625912 Tpm3-rs2 - - 4 A3|4 11.39 cM tropomyosin 3, related sequence 2 pseudo 102639277 Mm.411721 XR_378555 Gm35625 - - 7 F3|7 predicted gene, 35625 ncRNA 102639573 Mm.384081 XR_384461 Gm35853 - - 15 F2|15 predicted gene, 35853 ncRNA 21151 T(2;8)2Wa T2Wa - - reciprocal translocation, Chr 2 and 8, Wageningen 2 other 108672 Mm.30574 NM_175358 ENSMUSG00000033906 Zdhhc15 6030457O13Rik - X|X D zinc finger, DHHC domain containing 15 protein-coding 105244023 XR_865768 Gm37336 - - 1 H4|1 predicted gene, 37336 ncRNA 19589 Rb(6.13)3Rma Rb3Rma - - Robertsonian translocation, Chr 6 and 13, Universita di Roma 3 other 101243624 Mm.306256 NR_102297 ENSMUSG00000106230 Gm29811 - - 3 G3|3 predicted gene, 29811 ncRNA 61786 D3Mit238 - - 3 9.98 cM DNA segment, Chr 3, Massachusetts Institute of Technology 238 unknown 100036393 Char2a - - - P. chabaudi malaria resistance QTL 2a unknown 105245734 LOC105245734 - - 14 B disks large homolog 5-like pseudo 16385 Is(HSR;1)1Lub Is1Lub - - insertion, homogeneous staining region, Chr 1, Lubeck 1 other 61113 D2Mit488 - - 2 65.14 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 488 unknown 100035143 Ossc1 - - 7 32.75 cM osteosarcoma susceptibility 1 unknown 100113464 Ewrq1 - - - ear wound repair QTL 1 unknown 100418039 Gm18961 - - 17|17 E1.1 actin related protein 2/3 complex, subunit 1A pseudogene pseudo 100043467 XM_001480228 Gm4454 - - 7 B3|7 predicted gene 4454 protein-coding 70252 Mm.380486 NR_015508 ENSMUSG00000097571 Jpx 2010000I03Rik|2510040I06Rik|Enox - X D|X 46.17 cM Jpx transcript, Xist activator (non-protein coding) ncRNA 102640003 XR_001784840 Gm36182 - - 5 B1|5 predicted gene, 36182 ncRNA 102638391 XR_373701 Gm34968 - - 1 H3|1 predicted gene, 34968 ncRNA 102640536 Gm36573 - - 12|12 predicted gene, 36573 ncRNA 16747 l1Rk6 l(1)-6Rk - - lethal, Chr 1, Roderick 6 unknown 27524 B520L19S - - - DNA segment, B520L19S unknown 667167 Rpl31-ps22 EG667167|Gm15771 - 15|15 E2 ribosomal protein L31, pseudogene 22 pseudo 237246 Mm.336326 BC022960 Gm16590 - X|X F5 cDNA sequence BC022960 protein-coding 102467441 n-TTtgt3 n-Tt17 - 14 C1|14 nuclear encoded tRNA threonine 3 (anticodon TGT) tRNA 69035 Mm.28300 NM_026917 ENSMUSG00000025786 Zdhhc3 1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373 - 9|9 F4 zinc finger, DHHC domain containing 3 protein-coding 110032 Kif22-ps AL033313|Kif22b - 1 C3|1 33.75 cM kinesin family member 22, pseudogene pseudo 102634971 XR_387961 Gm32423 - - 8 D1|8 predicted gene, 32423 ncRNA 71805 Mm.458170 NM_172410 ENSMUSG00000032939 Nup93 2410008G02Rik - 8|8 C5 nucleoporin 93 protein-coding 75687 Mm.41261 NM_001081241 ENSMUSG00000038604 Ripor1 2310066E14Rik|AI837433|Fam65a - 8|8 D3 RHO family interacting cell polarization regulator 1 protein-coding 102634292 Gm31913 - - 12|12 predicted gene, 31913 pseudo 100125597 Cyp2d39-ps Gm20573 - 15|15 E1 cytochrome P450, family 2, subfamily d, polypeptide 39, pseudogene pseudo 102635570 Gm32867 - - 9|9 predicted gene, 32867 ncRNA 102634705 Gm32226 - - 15|15 predicted gene, 32226 ncRNA 102633605 LOC102633605 - - 13 C3 60S ribosomal protein L32 pseudogene pseudo 74696 Mm.399268 4930519A11Rik - - 12|12 RIKEN cDNA 4930519A11 gene protein-coding 81017 Mm.160382 NM_030742 ENSMUSG00000058631 Vmn1r63 V1R1|V1rd1|V3R1 - 7|7 A1 vomeronasal 1 receptor 63 protein-coding 14176 Mm.5055 NM_010203 ENSMUSG00000029337 Fgf5 Fgf-5|HBGF-5|angora|go - 5 E3|5 47.77 cM fibroblast growth factor 5 protein-coding 20675 Mm.35784 NM_009237 ENSMUSG00000045179 Sox3 Sox-3 - X A6|X 33.66 cM SRY (sex determining region Y)-box 3 protein-coding 70852 Mm.437014 NR_045827 ENSMUSG00000027196 Alkbh3os1 4921507L20Rik - 2|2 E1 alkB homolog 3, opposite strand 1 ncRNA 72712 2810038L03Rik - - 1|1 B RIKEN cDNA 2810038L03 gene protein-coding 75957 Mm.34859 NR_029382 Mir17hg 5033413D16Rik|Mirhg1|mir-17-92 - 14|14 E4 Mir17 host gene (non-protein coding) ncRNA 100035712 Rfpw6 Rf6 - - retroperitoneal fat pad weight 6 unknown 101961 AA589427 - - - expressed sequence AA589427 protein-coding 258469 Mm.271392 NM_146477 ENSMUSG00000056600 Olfr90 MOR256-21|bM573K1.2 - 17|17 B1 olfactory receptor 90 protein-coding 235345 Mm.72828 NM_177702 ENSMUSG00000032057 4833427G06Rik - - 9|9 A5.3 RIKEN cDNA 4833427G06 gene protein-coding 19440 Rb(1.15)2Ct Rb2Ct - - Robertsonian translocation, Chr 1 and 15, Cattanach 2 other 108520 Ms13-26 Ms13-Hf10 - - minisatellite 13-26 detected by M13 phage probe other 62290 D19Mit60 - - 19 13.9 cM DNA segment, Chr 19, Massachusetts Institute of Technology 60 unknown 77857 Mm.160006 NR_131098 ENSMUSG00000097360 9430065F17Rik E130110G22Rik - 13|13 B3 RIKEN cDNA 9430065F17 gene ncRNA 102638871 Gm21720 - - Y|Y predicted gene, 21720 protein-coding 26896 Mm.17616 NM_012005 ENSMUSG00000064127 Med14 9930001L01Rik|AU041628|Crsp2|Gm641|ORF1|Trap170 - X|X A1.1 mediator complex subunit 14 protein-coding 27910 D16Ium55 - - 16 39.34 cM DNA segment, Chr 16, Indiana University Medical 55 unknown 723857 NR_029878 ENSMUSG00000065438 Mir377 Mirn377|mir-377|mmu-mir-377 - 12 F1|12 microRNA 377 ncRNA 89867 Mm.87114 NM_033354 ENSMUSG00000026589 Sec16b Lztr2|Rgpr|Rgpr-p117 - 1|1 H1 SEC16 homolog B (S. cerevisiae) protein-coding 102638343 XR_387594 Gm34931 - - 5 F|5 predicted gene, 34931 ncRNA 780793 Ighv2-7 Gm16597 - 12|12 F1 immunoglobulin heavy variable 2-7 other 61679 D6Mit284 - - 6 41.11 cM DNA segment, Chr 6, Massachusetts Institute of Technology 284 unknown 67988 Mm.268041 NM_198295 ENSMUSG00000024614 Tmx3 6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830 - 18|18 E4 thioredoxin-related transmembrane protein 3 protein-coding 70069 Mm.107718 NM_027304 ENSMUSG00000048077 H1fnt 1700026P10Rik|H1.7|H1t2|Hanp1|mH1t2 - 15|15 F1 H1 histone family, member N, testis-specific protein-coding 269365 Rps19-ps7 Gm14072 - 2|2 F3 ribosomal protein S19, pseudogene 7 pseudo 20354 Mm.33903 NM_013660 ENSMUSG00000021451 Sema4d CD100|Semacl2|Semaj|Semcl2|coll-4 - 13|13 A5 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D protein-coding 67246 Mm.333515 NM_026054 ENSMUSG00000032712 2810474O19Rik 6720435I21Rik|AA536804|AU020969|GET|Kiaa1551 - 6|6 G3 RIKEN cDNA 2810474O19 gene protein-coding 100035838 Nstr2 - - - nerve sheath tumor resistance QTL 2 unknown 105244273 XR_866662 Gm39914 - - 2 E5|2 predicted gene, 39914 ncRNA 106695 Mm.410573 AU015230 - - - expressed sequence AU015230 unknown 665310 Gm7581 EG665310 - 18|18 A1 predicted gene 7581 pseudo 16603 Klk2-ps Gk25|Klk-ps10|mGk-25 - 7 B3|7 28.39 cM kallikrein-related peptidase 2, pseudogene pseudo 102371 Mm.27585 NM_001033208 ENSMUSG00000041361 Myzap AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap - 9|9 D myocardial zonula adherens protein protein-coding 330788 Mm.41364 NM_177899 ENSMUSG00000043090 Zfp866 9830167H18Rik|AI875089|C85843|D330038O06Rik - 8|8 B3.3 zinc finger protein 866 protein-coding 78213 Mm.402039 NR_046193 4930563M20Rik - - 8|8 E1 RIKEN cDNA 4930563M20 gene ncRNA 104089 Hct - - - hair constriction unknown 69286 Mm.47058 NM_027018 ENSMUSG00000020213 Glipr1l1 1700011E04Rik - 10|10 D2 GLI pathogenesis-related 1 like 1 protein-coding 237558 Mm.336386 NM_001033333 ENSMUSG00000034057 Myrfl Gm239 - 10|10 D2 myelin regulatory factor-like protein-coding 100038626 Mm.288741 5830462I19Rik - - - RIKEN cDNA 5830462I19 gene unknown 108168175 XR_001781356 Gm46466 - - 14 A1|14 predicted gene, 46466 ncRNA 116747 Rmcs2 - - 17|17 response to metastatic cancers 2 protein-coding 71984 Mm.333725 NM_023637 ENSMUSG00000070699 Sars2 2410015F05Rik|D7Ertd353e|SerRS|SerRSmt - 7 B1|7 16.91 cM seryl-aminoacyl-tRNA synthetase 2 protein-coding 112007 Batq1 - - - brown fat QTL 1 unknown 68584 Mm.484044 1110020C17Rik - - 14|14 D1 RIKEN cDNA 1110020C17 gene unknown 320007 Mm.242144 NM_198034 ENSMUSG00000022696 Sidt1 AW045928|B830021E24Rik - 16|16 B4 SID1 transmembrane family, member 1 protein-coding 112157 Faq2 - - - fluctuating asymmetry QTL 2 unknown 109280018 LOC109280018 Mm146 - - VISTA enhancer mm146 biological-region 407818 Mm.442281 BC055308 - - - cDNA sequence BC055308 protein-coding 100839 Mm.442358 AU024546 - - - expressed sequence AU024546 unknown 110402 Evi26 - - - ecotropic viral integration site 26 protein-coding 62205 D15Mit96 - - 15 41.95 cM DNA segment, Chr 15, Massachusetts Institute of Technology 96 unknown 62202 D15Mit79 - - 15 58.97 cM DNA segment, Chr 15, Massachusetts Institute of Technology 79 unknown 76408 Mm.23942 NM_029600 ENSMUSG00000020865 Abcc3 1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3 - 11|11 D ATP-binding cassette, sub-family C (CFTR/MRP), member 3 protein-coding 117009 Pitm4 - - 15 41.96 cM prion incubation time 4 unknown 61998 D8Mit347 - - 8 41.82 cM DNA segment, Chr 8, Massachusetts Institute of Technology 347 unknown 21148 T(2;8)26H T(5;18)26H|T26H - - reciprocal translocation, Chr 2 and 8, Harwell 26 other 12419 Mm.262059 NM_007626 ENSMUSG00000009575 Cbx5 2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha - 15|15 F3 chromobox 5 protein-coding 102631731 Mm.406595 XR_386661 Gm29998 - - 19 C1|19 predicted gene, 29998 ncRNA 105246933 XR_880475 Gm42127 - - 5 E4|5 predicted gene, 42127 ncRNA 105243523 XR_880250 Gm39419 - - 11 E1|11 predicted gene, 39419 ncRNA 75205 Mm.399304 NR_131122 ENSMUSG00000108803 4930533N22Rik Gm44904 - 7|7 D1 RIKEN cDNA 4930533N22 gene ncRNA 446216 Nanog-ps2 nanogPb - 12|12 C1 Nanog pseudogene 2 pseudo 626740 XM_006540492 Scgb2b30 Abpbg30|EG626740|Gm6703 - 7|7 B1 secretoglobin, family 2B, member 30 protein-coding 67394 Mm.491293 NR_028368 ENSMUSG00000087354 4930404I05Rik - - 16|16 C3.3 RIKEN cDNA 4930404I05 gene ncRNA 100416774 Gm18243 - - 12|12 C3 zinc finger protein 146 pseudogene pseudo 22633 z - - - lethal unknown 19580 Rb(5.19)1Wh Rb1Wh|T1Wh - - Robertsonian translocation, Chr 5 and 19, White 1 other 629481 Mm.390460 NR_131149 ENSMUSG00000113550 Gm29687 - - 12|12 A2 predicted gene, 29687 ncRNA 102640720 XR_872372 Gm12121 - - 11 A4|11 19.56 cM predicted gene 12121 ncRNA 78913 Mm.249005 NM_001081068 ENSMUSG00000052299 Ltn1 4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294 - 16|16 C3.3 listerin E3 ubiquitin protein ligase 1 protein-coding 62486 D10Mit116 - - 10 38.51 cM DNA segment, Chr 10, Massachusetts Institute of Technology 116 unknown 19208 Mm.215173 NM_011195 ENSMUSG00000036858 Ptcra gp33|pT-alpha|pT-alpha-TCR|pT[a]|pTa|pTalpha - 17|17 C pre T cell antigen receptor alpha protein-coding 102642720 XR_869852 Gm38627 - - 7 E3|7 predicted gene, 38627 ncRNA 100124470 NR_030579 ENSMUSG00000076255 Mir92b Mirn92b|mir-92b|mmu-mir-92b - 3 F1|3 microRNA 92b ncRNA 100036038 Wg6 - - - weight gain in high growth mice 6 unknown 623516 Gm6437 EG623516 - 13|13 A1 predicted gene 6437 pseudo 20230 Mm.311655 NM_009122 ENSMUSG00000023927 Satb1 2610306G12Rik|AW413156 - 17|17 C special AT-rich sequence binding protein 1 protein-coding 73266 Mm.335891 NR_001581 ENSMUSG00000091304 Speer6-ps1 1700039A02Rik|Alb-cre|Alb|AlbCre|SPEER-6|Tg(Alb-cre)21Mgn|albumin-cre|cr - 13|13 A1 spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 pseudo 109191 Mm.250391 9430025N12Rik - - 5|5 RIKEN cDNA 9430025N12 gene protein-coding 258419 Olfr465-ps1 MOR218-3 - 13|13 B3 olfactory receptor 465, pseudogene 1 pseudo 102635606 XR_389875 Gm32897 - - 4 E2|4 predicted gene, 32897 ncRNA 62490 D10Mit130 - - 10 34.72 cM DNA segment, Chr 10, Massachusetts Institute of Technology 130 unknown 102633949 XR_390841 Gm31648 - - 4 D3|4 predicted gene, 31648 ncRNA 18036 Mm.220333 NM_010908 ENSMUSG00000030595 Nfkbib I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B - 7|7 B1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta protein-coding 665380 Gm11989 - - 11|11 A1 predicted gene 11989 pseudo 21021 T(1;7)27Ad T27Ad - - reciprocal translocation, Chr 1 and 7, Adler 27 other 723860 NR_029884 ENSMUSG00000065457 Mir383 Mirn383|mir-383|mmu-mir-383 - 8 A4|8 microRNA 383 ncRNA 110633 H2-Q13 Q13 - - histocompatibility 2, Q region locus 13 protein-coding 170483 Mm.391566 NM_130455 ENSMUSG00000035745 Grin3b GluN3B|NR3B - 10|10 C1 glutamate receptor, ionotropic, NMDA3B protein-coding 102636880 XR_384293 Gm33830 - - 15 E2|15 predicted gene, 33830 ncRNA 667659 Gm12209 - - 11|11 B1.3 predicted gene 12209 protein-coding 74641 Mm.416922 4930431C11Rik - - 12|12 RIKEN cDNA 4930431C11 gene protein-coding 626513 Gm14052 - - 2|2 F2 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 100039286 Mm.406728 Gm2138 - - 11 D|11 predicted gene 2138 ncRNA 666283 Gm8022 EG666283 - 1|1 B histone deacetylase 2 pseudogene pseudo 75754 9030607L02Rik - - 19|19 RIKEN cDNA 9030607L02 gene protein-coding 68205 Mm.20273 NM_026615 ENSMUSG00000069020 Urm1 2900073H19Rik - 2|2 B ubiquitin related modifier 1 protein-coding 243725 Mm.332901 NM_181595 ENSMUSG00000032827 Ppp1r9a 2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I - 6 A1|6 1.86 cM protein phosphatase 1, regulatory (inhibitor) subunit 9A protein-coding 54641 DXImx43e Sfc14 - - DNA segment, Chr X, Immunex 43, expressed unknown 319216 Mm.332387 NR_015588 ENSMUSG00000097216 4932441J04Rik - - 5|5 C1 RIKEN cDNA 4932441J04 gene ncRNA 664705 Cypt11 - - X|X cysteine-rich perinuclear theca 11 protein-coding 56075 Mm.249752 NM_019501 ENSMUSG00000026784 Pdss1 2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1 - 2|2 A3 prenyl (solanesyl) diphosphate synthase, subunit 1 protein-coding 170696 Trem5 - - - triggering receptor expressed on myeloid cells 5 protein-coding 102638981 Gm29652 - - Y|Y predicted gene 29652 ncRNA 67451 Mm.2252 NM_026163 ENSMUSG00000041957 Pkp2 1200008D14Rik|1200012P04Rik|AA516617|Pkp2l - 16|16 A2 plakophilin 2 protein-coding 252903 Mm.32409 NM_183027 ENSMUSG00000054702 Ap1s3 1190009B22|Jr2|[s]3A - 1|1 C4 adaptor-related protein complex AP-1, sigma 3 protein-coding 105242960 XR_882156 Gm39024 - - 7 C|7 predicted gene, 39024 ncRNA 105246323 XR_876984 Gm41624 - - 17 E3|17 predicted gene, 41624 ncRNA 71468 Mm.415195 NM_027802 ENSMUSG00000054310 Obox1 7420700M11Rik|AU015708|AU024152 - 7 A2|7 8.5 cM oocyte specific homeobox 1 protein-coding 28294 D10Jhu71e - - - DNA segment, Chr 10, Johns Hopkins University 71 expressed unknown 404592 AL117703 - - - expressed sequence AL117703 unknown 258657 Mm.377620 NM_146663 ENSMUSG00000090874 Olfr733 MOR241-2 - 14|14 C1 olfactory receptor 733 protein-coding 78550 Mm.160095 NR_152124 E130119H09Rik - - 13|13 B1 RIKEN cDNA E130119H09 gene ncRNA 66257 Mm.10407 NM_025449 ENSMUSG00000032606 Nicn1 1500032A17Rik - 9|9 F1 nicolin 1 protein-coding 19017 Mm.259072 NM_008904 ENSMUSG00000029167 Ppargc1a A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1 - 5|5 C1 peroxisome proliferative activated receptor, gamma, coactivator 1 alpha protein-coding 110346 Spe2 - - - salivary protein electrophoretic 2 protein-coding 102639350 Gm35684 - - 5|5 predicted gene, 35684 ncRNA 109279881 LOC109279881 Mm13 - - VISTA enhancer mm13 biological-region 100417406 Gm18593 - - 5|5 C3.3 retinoblastoma binding protein 4 pseudogene pseudo 72371 Mm.81475 NM_028215 ENSMUSG00000071252 2210408I21Rik - - 13|13 C1 RIKEN cDNA 2210408I21 gene protein-coding 102640527 XM_011247417 Gm36566 - - 19 C1|19 killin, p53-regulated DNA replication inhibitor pseudogene pseudo 633030 XR_381242 Gm7099 EG633030 - 12|12 A1.1 predicted gene 7099 pseudo 380758 LOC380758 - - 12|12 B2 similar RIKEN cDNA 1200015F23 protein protein-coding 105243026 XR_869864 Gm39067 - - 7 E3|7 predicted gene, 39067 ncRNA 723953 NR_029752 ENSMUSG00000065511 Mir129-2 Mirn129-2|mir-129-2 - 2|2 E1 microRNA 129-2 ncRNA 78545 C430014O12Rik - - 18|18 RIKEN cDNA C430014O12 gene protein-coding 108168363 LOC108168363 - - 18 E1 60S ribosomal protein L29 pseudogene pseudo 319592 Mm.428316 D030020J04Rik - - 2|2 RIKEN cDNA D030020J04 gene protein-coding 382114 XR_380005 ENSMUSG00000111828 D830035M03Rik Gm1712 - 9|9 F4 RIKEN cDNA D830035M03 gene ncRNA 108168139 XR_001781174 Gm46441 - - 14 A2|14 predicted gene, 46441 ncRNA 100502768 Mm.483636 Gm19359 - - 5|5 75.47 cM predicted gene, 19359 unknown 102632124 Mm.332482 XR_373199 Gm26901 - - 1 A1|1 predicted gene, 26901 ncRNA 665903 XR_373281 Gm7846 EG665903 - 1 A5|1 predicted gene 7846 pseudo 74167 Mm.241484 NM_028794 ENSMUSG00000029310 Nudt9 1190002C07Rik|ADPR-PPase|AI462474 - 5|5 E5 nudix (nucleoside diphosphate linked moiety X)-type motif 9 protein-coding 65111 Mm.29028 NM_022994 ENSMUSG00000068921 Dap3 4921514D13Rik|DAP-3|MRP-S29|S29mt - 3 F1|3 39.01 cM death associated protein 3 protein-coding 229473 Mm.28838 NM_172681 ENSMUSG00000033767 Tmem131l D930015E06Rik|Kiaa0922|mKIAA0922 - 3|3 E3-F1 transmembrane 131 like protein-coding 100861879 XM_003689005 ENSMUSG00000091077 Gm21292 - - Y A1|Y predicted gene, 21292 protein-coding 381484 Mm.217376 NM_001081687 ENSMUSG00000078780 Gm5150 - - 3 A1|3 predicted gene 5150 protein-coding 320674 4921534A09Rik - - 9|9 A3 RIKEN cDNA 4921534A09 gene protein-coding 72972 Mm.27621 NM_027045 ENSMUSG00000058690 Ccser2 1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14 - 14|14 B coiled-coil serine rich 2 protein-coding 13000 Mm.51136 NM_009974 ENSMUSG00000046707 Csnk2a2 1110035J23Rik|C77789|CK2 - 8 C5|8 47.12 cM casein kinase 2, alpha prime polypeptide protein-coding 102639450 XR_376931 Gm35762 - - 5 B3|5 predicted gene, 35762 ncRNA 24045 Mm.257052 NM_011886 ENSMUSG00000028049 Scamp3 Sc3 - 3|3 F1 secretory carrier membrane protein 3 protein-coding 27607 D0Dcr9 - - - DNA segment, Derry C. Roopenian 9 unknown 432449 A230081H15Rik - - 10|10 A4 Riken cDNA A230081H15 gene protein-coding 243906 Mm.347644 NM_011748 ENSMUSG00000053985 Zfp14 4732429I09Rik|Krox-9|Zfp-14|mKIAA1559 - 7|7 B1 zinc finger protein 14 protein-coding 60824 D4Mit69 - - 4 68.55 cM DNA segment, Chr 4, Massachusetts Institute of Technology 69 unknown 19952 Rpl32-ps - - 3 E1|3 32.25 cM ribosomal protein L32, pseudogene pseudo 102638616 Gm35139 - - 5 A1|5 predicted gene, 35139 pseudo 108177 G6pt-ps - - - glucose 6-phosphatase, pseudogene pseudo 109279849 LOC109279849 Mm5 - - VISTA enhancer mm5 biological-region 102634923 XR_379487 Gm32392 - - 9 B|9 predicted gene, 32392 ncRNA 100503230 Mm.406733 XR_106135 Gm19600 - - 8 E1|8 72.1 cM predicted gene, 19600 ncRNA 666393 Gm12838 - - 4|4 D1 predicted gene 12838 pseudo 732527 Gt(pU21)108Imeg Ayu21-108|GtAyu21-108 - - gene trap 108, Institute of Molecular Embryology and Genetics unknown 664799 Mm.389396 NM_001081387 ENSMUSG00000070495 Ctcfl Boris - 2|2 H3 CCCTC-binding factor (zinc finger protein)-like protein-coding 14842 Mm.4797 NM_008178 ENSMUSG00000053129 Gsx1 Gsh-1|Gsh1 - 5 G3|5 86.79 cM GS homeobox 1 protein-coding 61359 D4Mit168 - - 4 49.41 cM DNA segment, Chr 4, Massachusetts Institute of Technology 168 unknown 102639375 Mm.385453 XR_387457 Gm29514 - - 1 F|1 predicted gene 29514 ncRNA 100041511 Rpl19-ps11 Gm15360|Rpl19-ps - 8|8 A1.3 ribosomal protein L19, pseudogene 11 pseudo 102639077 XR_385704 Gm35477 - - 17 E1.1|17 predicted gene, 35477 ncRNA 73064 2900080M03Rik - - 4|4 RIKEN cDNA 2900080M03 gene protein-coding 21374 Mm.244820 NM_013684 ENSMUSG00000014767 Tbp GTF2D1|Gtf2d|SCA17|TFIID - 17 A2|17 8.95 cM TATA box binding protein protein-coding 81489 Mm.282092 NM_018808 ENSMUSG00000005483 Dnajb1 0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40 - 8|8 C2 DnaJ heat shock protein family (Hsp40) member B1 protein-coding 105244682 XR_868132 Gm40244 - - 4 D2.2|4 predicted gene, 40244 ncRNA 16733 L1Md-Tf23 - - - L1 repeat, Tf subfamily, member 23 other 258545 Mm.377561 NM_146552 ENSMUSG00000063173 Olfr811 MOR110-6 - 10|10 D3 olfactory receptor 811 protein-coding 76478 Mm.27355 NM_029621 ENSMUSG00000035439 Haus8 2410004L22Rik|Hice1 - 8|8 B3.3 4HAUS augmin-like complex, subunit 8 protein-coding 109260 C030018P15Rik C78986 - - RIKEN cDNA C030018P15 gene protein-coding 53901 Mm.251242 NM_030598 ENSMUSG00000039601 Rcan2 Csp2|Dscr1l1|MCIP2|ZAKI-4 - 17 B3|17 19.77 cM regulator of calcineurin 2 protein-coding 74706 Mm.402550 NR_027926 ENSMUSG00000097129 4930507D05Rik - - 10|10 B4 RIKEN cDNA 4930507D05 gene ncRNA 66983 Mm.29622 NM_025884 ENSMUSG00000046010 Zfp830 2410003C20Rik|AV301118|AW048207|Ccdc16|Omcg1|Znf830 - 11|11 C zinc finger protein 830 protein-coding 97923 Mm.352689 C80171 - - - expressed sequence C80171 unknown 56318 Mm.19941 NM_019807 ENSMUSG00000032561 Acpp 5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal - 9|9 F1 acid phosphatase, prostate protein-coding 632649 Vmn2r-ps26 EG632649|Gm7090 - 5|5 G3 vomeronasal 2, receptor, pseudogene 26 pseudo 100039437 Gm11515 - - 11|11 D predicted gene 11515 protein-coding 102640100 XR_379903 ENSMUSG00000110996 Gm36251 - - 9 F3|9 predicted gene, 36251 ncRNA 71413 Mm.439675 5430410E06Rik - - 17|17 RIKEN cDNA 5430410E06 gene protein-coding 100217429 NR_028529 Snord64 MBII-13 - 7 B5|7 small nucleolar RNA, C/D box 64 snoRNA 100272 AU015623 - - - expressed sequence AU015623 protein-coding 27261 Mm.33910 NM_013739 ENSMUSG00000035711 Dok3 AI450713|Dokl - 13|13 B1 docking protein 3 protein-coding 100904 Mm.444009 AW050077 - - - expressed sequence AW050077 protein-coding 102633844 Gm12637 - - 4|4 43.16 cM predicted gene 12637 ncRNA 105245591 Gm41023 - - 13|13 predicted gene, 41023 protein-coding 257971 Mm.377279 NM_001011790 ENSMUSG00000063827 Olfr1382 GA_x5J8B7TT7LR-4113-3651|MOR256-43P|MOR256-57 - 11|11 B1.2 olfactory receptor 1382 protein-coding 112167 Faq6 - - - fluctuating asymmetry QTL 6 unknown 100042235 Mm.483675 XR_874150 Gm3739 - - 14 A1|14 predicted gene 3739 unknown 631470 Gm7065 EG631470 - 13|13 B3 ribosomal protein L23a pseudogene pseudo 102635196 XR_384684 Gm32596 - - 16 A1|16 predicted gene, 32596 ncRNA 106627 Mm.116830 AI646383 - - - expressed sequence AI646383 unknown 58226 Mm.268378 NM_021415 ENSMUSG00000024112 Cacna1h Cav3.2|MNCb-1209|alpha13.2 - 17 A3.3|17 12.53 cM calcium channel, voltage-dependent, T type, alpha 1H subunit protein-coding 21108 T(2;10)14Ad T14Ad - - reciprocal translocation, Chr 2 and 10, Adler 14 other 110678 TelXqYq2 TelXqYq-2 - XY 75.0 cM telomeric sequence, Chr X, Chr Y, q arm 2 protein-coding 102637887 XR_377016 Gm34583 Gm42730 - 5 C3.2|5 predicted gene, 34583 ncRNA 105246634 XR_878133 Gm41896 - - X A7.3|X predicted gene, 41896 ncRNA 259086 Mm.377831 NM_147082 ENSMUSG00000046396 Olfr609 MOR9-1 - 7|7 E3 olfactory receptor 609 protein-coding 100503387 Gm19667 - - 9|9 56.64 cM predicted gene, 19667 ncRNA 69165 Mm.175163 NM_026972 ENSMUSG00000065987 Cd209b 1810030I22Rik|DC-SIGNR1|OtB7|SIGNR1|mSIGNR1 - 8|8 A1.1 CD209b antigen protein-coding 105246267 XR_876760 Gm41575 - - 17 B1|17 predicted gene, 41575 ncRNA 102636201 XR_871967 Gm33336 - - 10 C2|10 predicted gene, 33336 ncRNA 20446 Mm.3947 NM_009180 ENSMUSG00000057286 St6galnac2 II|ST6GalNAc|Siat7|Siat7b - 11|11 E2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding 192113 Mm.273271 NM_138652 ENSMUSG00000022229 Atp12a Atp1al1|HKalpha2|cHKA - 14|14 C3 ATPase, H+/K+ transporting, nongastric, alpha polypeptide protein-coding 102640462 XR_390811 Gm36518 - - 4 D2.3|4 predicted gene, 36518 ncRNA 72318 Mm.32911 NM_028195 ENSMUSG00000018008 Cyth4 2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017 - 15|15 E1 cytohesin 4 protein-coding 74091 Mm.24887 NM_028749 ENSMUSG00000042684 Npl 0610033B02Rik - 1|1 G3 N-acetylneuraminate pyruvate lyase protein-coding 677027 Rps15a-ps3 Gm13048 - 4|4 E2 ribosomal protein S15A, pseudogene 3 pseudo 108281109 LOC108281109 - - - Pax8 CNS87 enhancer biological-region 257892 Mm.377288 NM_001011743 ENSMUSG00000056564 Olfr324 MOR102-2 - 11|11 B1.3 olfactory receptor 324 protein-coding 23819 B489B12S - - - DNA segment B489-B-12-S unknown 238021 Mm.481403 NM_172802 ENSMUSG00000025380 Fscn2 A930022G03|Ahl8|C630046B20Rik - 11|11 E2 fascin actin-bundling protein 2 protein-coding 14777 Mm.57225 NR_033563 Gpx2-ps1 AU041318 - 7 E2|7 54.34 cM glutathione peroxidase 2, pseudogene 1 pseudo 13848 Mm.271976 NM_007680 ENSMUSG00000029869 Ephb6 Cekl|Mep - 6|6 B2.1 Eph receptor B6 protein-coding 100035798 Igf1sl3 - - 15 26.07 cM IGF-1 serum levels 3 unknown 62418 D14Mit202 - - 14 16.09 cM DNA segment, Chr 14, Massachusetts Institute of Technology 202 unknown 319159 NM_178210 ENSMUSG00000067455 Hist1h4j - - 13|13 A3.1 histone cluster 1, H4j protein-coding 102467429 n-TGgcc1 n-Tg9 - 4 D2.3|4 nuclear encoded tRNA glycine 1 (anticodon GCC) tRNA 99823 Mm.395119 AU040958 AU040986 - - expressed sequence AU040958 protein-coding 100316779 NR_035517 ENSMUSG00000089357 Mir2137 mmu-mir-2137 - X A7.3|X 37.29 cM microRNA 2137 ncRNA 108168648 XM_017318859 LOC108168648 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 110151 H2-Ke5 H-2Ke5|Ke-5 - - H2-K region expressed gene 5 protein-coding 58994 Mm.23298 NM_021491 ENSMUSG00000031906 Smpd3 4631433G07Rik|AI427456|AW537966|fro|nSMase2 - 8|8 D3 sphingomyelin phosphodiesterase 3, neutral protein-coding 77220 Mm.266260 NM_029881 ENSMUSG00000049420 Tmem200a C030003D03Rik - 10|10 A4 transmembrane protein 200A protein-coding 12362 Mm.1051 NM_009807 ENSMUSG00000025888 Casp1 ICE|Il1bc - 9 A1|9 2.46 cM caspase 1 protein-coding 76782 2410198J08Rik - - 2|2 RIKEN cDNA 2410198J08 gene protein-coding 58988 Mm.271937 NM_021485 ENSMUSG00000024830 Rps6kb2 S6K-beta-2|S6K2 - 19|19 A ribosomal protein S6 kinase, polypeptide 2 protein-coding 111745 Iapt12 - - - intracisternal A particle, tumor specific 12 other 403187 Mm.239583 NM_207525 ENSMUSG00000052214 Opa3 D630048P19Rik|Gm1425|Gm472 - 7|7 A3 optic atrophy 3 protein-coding 27797 D2Dcr8 - - - DNA segment, Chr 2, Derry C. Roopenian 8 unknown 623898 Mm.425228 NM_001037919 ENSMUSG00000091903 Gm6460 EG623898 - 5 A1|5 predicted gene 6460 protein-coding 668309 Gm9098 EG668309 - 13|13 D2.3 predicted gene 9098 pseudo 108168278 Mm.417246 NR_155457 Gm46545 - - 16 B1|16 predicted gene, 46545 ncRNA 53224 44.MHAa42h8.seq - - - DNA segment, 44.MHAa42h8.seq unknown 108167320 XM_011249870 LOC108167320 - - 9 F4 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit delta-like protein-coding 229443 Gm4857 EG229443 - 3|3 E3 coatomer protein complex, subunit epsilon pseudogene pseudo 629873 Mm.423246 NM_001039502 ENSMUSG00000075567 Krtap1-4 - - 11 D|11 keratin associated protein 1-4 protein-coding 100416329 Gm18043 - - 10|10 C2 predicted gene, 18043 pseudo 545975 Mm.380104 NM_001164201 ENSMUSG00000030510 Cers3 4930550L11Rik|Gm488|Lass3|T3L - 7|7 C ceramide synthase 3 protein-coding 100862075 XM_011251044 ENSMUSG00000093903 Gm21454 - - Y A1|Y predicted gene, 21454 protein-coding 73532 Mm.23516 NM_028562 ENSMUSG00000032566 1700080E11Rik AI429110|Tseg8 - 9|9 F1 RIKEN cDNA 1700080E11 gene protein-coding 69681 Mm.33677 NR_004853 ENSMUSG00000092300 Cdk3-ps 2310050O10Rik|Cdk3 - 11|11 E2 cyclin-dependent kinase 3, pseudogene pseudo 97983 C85319 - - - expressed sequence C85319 unknown 18130 Mm.319684 NM_008715 ENSMUSG00000035161 Ints6 2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l - 14|14 D1 integrator complex subunit 6 protein-coding 69916 Mm.417829 2610020F03Rik - - 16|16 RIKEN cDNA 2610020F03 gene ncRNA 105245 Mm.28622 NM_145367 ENSMUSG00000038991 Txndc5 AL022641|ERp46|PC-TRP - 13|13 A3.3 thioredoxin domain containing 5 protein-coding 52358 D1Ertd576e - - 1 52.93 cM DNA segment, Chr 1, ERATO Doi 576, expressed unknown 102636667 Gm33670 - - 17|17 predicted gene, 33670 protein-coding 108168833 LOC108168833 - - 2 G1 high mobility group protein B1 pseudogene pseudo 225895 Mm.220886 NM_146092 ENSMUSG00000003680 Taf6l 2810417N14Rik|BB223262|C530024J06Rik|Paf65a - 19|19 A TATA-box binding protein associated factor 6 like protein-coding 100416074 Gm17905 - - 1|1 H5 nucleophosmin 1 pseudogene pseudo 670007 Gm9476 - - 10 D1|10 THO complex 4 pseudogene pseudo 62715 D18Mit111 - - 18 11.96 cM DNA segment, Chr 18, Massachusetts Institute of Technology 111 unknown 100034800 Hsm1 - - 12 35.7 cM hereditary spherocytosis modifer 1 unknown 61953 D6Mit340 - - 6 78.49 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 340 unknown 102635406 XR_001784439 Gm32756 - - 4 D2.2|4 predicted gene, 32756 ncRNA 17977 Mm.301039 NM_010881 ENSMUSG00000020647 Ncoa1 KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1 - 12|12 A1.1 nuclear receptor coactivator 1 protein-coding 404523 Olfr1485-ps1 GA_x5J8B7W6KF8-5463415-5462623 - 19|19 A olfactory receptor 1485, pseudogene 1 pseudo 100043057 Mm.295917 NM_001101640 ENSMUSG00000091972 Tmem207 Gm540 - 16 B2|16 transmembrane protein 207 protein-coding 217246 Mm.296699 NM_001101453 ENSMUSG00000101605 Ace3 EG217246 - 11|11 E1 angiotensin I converting enzyme (peptidyl-dipeptidase A) 3 protein-coding 664903 Mm.425212 NR_036572 Rps15a-ps4 Gm13253|Lethe - 4|4 D2.3 ribosomal protein S15A, pseudogene 4 pseudo 78054 Mm.109087 4930570G05Rik - - 5|5 RIKEN cDNA 4930570G05 gene ncRNA 319463 Mm.126081 XR_001778681 C230057M02Rik Gm45898 - 8|8 E1 RIKEN cDNA C230057M02 gene unknown 27615 D0Hgu6 - - - DNA segment, Human Genetics Unit 6 unknown 109279918 LOC109279918 Mm169 - - VISTA enhancer mm169 biological-region 751525 NR_030457 ENSMUSG00000076128 Mir686 Mirn686|mmu-mir-686 - 14 C2|14 microRNA 686 ncRNA 52590 D13Ertd297e - - 13 33.26 cM DNA segment, Chr 13, ERATO Doi 297, expressed unknown 102632757 XR_387646 Gm30746 - - 5 F|5 predicted gene, 30746 ncRNA 329404 Mm.417725 NR_040636 ENSMUSG00000086349 Gm13497 A730015I17 - 2|2 C1.1 predicted gene 13497 ncRNA 436230 Mm.443049 NM_001033001 ENSMUSG00000087368 BC065397 R75336|parl7 - X|X F1 cDNA sequence BC065397 ncRNA 227580 Mm.229322 NM_153155 ENSMUSG00000049630 C1ql3 1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100 - 2|2 A1 C1q-like 3 protein-coding 19376 Mm.275864 NM_033475 ENSMUSG00000002059 Rab34 AI326479|Narr|Rah|Rah1 - 11 B5|11 46.74 cM RAB34, member RAS oncogene family protein-coding 66162 Mm.358692 NM_175103 ENSMUSG00000047721 Bola2 1110025L05Rik|BolA-2 - 7|7 F3 bolA-like 2 (E. coli) protein-coding 102635859 Mm.427362 XR_376758 Gm33093 Gm43644 - 5 A1|5 predicted gene, 33093 ncRNA 383706 Rpl35-ps1 Gm13628 - 2|2 C1.3 ribosomal protein L35, pseudogene 1 pseudo 66877 Mm.248755 NM_025820 ENSMUSG00000001767 Crnkl1 1200013P10Rik|5730590A01Rik|C80326|crn - 2|2 G1 crooked neck pre-mRNA splicing factor 1 protein-coding 628779 Mm.40210 NM_001252072 ENSMUSG00000078591 Hs3st4 EG628779|Gm6915 - 7 F3|7 67.56 cM heparan sulfate (glucosamine) 3-O-sulfotransferase 4 protein-coding 61806 D2Mit383 - - 2 50.44 cM DNA segment, Chr 2, Massachusetts Institute of Technology 383 unknown 320122 C230086J09Rik - - 14|14 E2.1 RIKEN cDNA C230086J09 gene protein-coding 106804094 LOC106804094 - - 7 F5 nonconserved acetylation island sequence M93 enhancer biological-region 105243512 XR_871057 Gm39412 - - 9 E3.3|9 predicted gene, 39412 ncRNA 628707 Gm14253 EG628707 - 2|2 H1 programmed cell death 10 pseudogene pseudo 11898 Mm.3217 NM_007494 ENSMUSG00000076441 Ass1 AA408052|ASS|Ass-1|fold - 2 B|2 21.81 cM argininosuccinate synthetase 1 protein-coding 110757 Ngfg-rs1 - - - nerve growth factor gamma, related sequence 1 protein-coding 545703 Gm13231 - - 4|4 E1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene pseudo 100126818 Gm17592 - - 17|17 A1 ribosomal protein L41 pseudogene pseudo 61409 D5Mit174 - - 5 65.33 cM DNA segment, Chr 5, Massachusetts Institute of Technology 174 unknown 102638180 XR_386146 Gm34806 - - 18 B1|18 predicted gene, 34806 ncRNA 627857 Gm6798 EG627857 - X|X A1.1 developmental pluripotency associated 5 pseudogene pseudo 108167726 XR_001779419 Gm37120 - - 1 E4|1 predicted gene, 37120 ncRNA 105244512 XR_867503 Gm40106 - - 3 F2.2|3 predicted gene, 40106 ncRNA 108637 NR_028276 ENSMUSG00000096263 Snord14c Gm23107|Rnu14|U14 - 9|9 A5.1 small nucleolar RNA, C/D box 14C snoRNA 74125 Mm.234823 NM_028768 ENSMUSG00000032468 Armc8 1200015K23Rik|Gid5|HSPC056 - 9|9 E3.3 armadillo repeat containing 8 protein-coding 100316677 NR_035431 ENSMUSG00000080665 Mir1199 Mirn1199|mir-1199|mmu-mir-1199 - 8 C2|8 40.24 cM microRNA 1199 ncRNA 72596 2700054B07Rik - - - RIKEN cDNA 2700054B07 gene protein-coding 100417509 Gm18657 - - 19|19 C3 lysophosphatidic acid receptor 1 pseudogene pseudo 111489 Xmmv31 Env-31|Xmmv-31 - - xenotropic-MCF leukemia virus 31 other 666133 Gm7942 EG666133 - 5|5 E3 predicted gene 7942 protein-coding 56332 Mm.21145 NM_019764 ENSMUSG00000032531 Amotl2 AW549739|C79691|Lccp|MASCOT|mKIAA0989 - 9|9 F1 angiomotin-like 2 protein-coding 72309 Mm.8569 NM_001002267 ENSMUSG00000054871 Tmem158 2310037P21Rik|Ris1 - 9|9 F4 transmembrane protein 158 protein-coding 381306 Mm.28152 NM_201364 ENSMUSG00000041406 BC055324 - - 1|1 H2.1 cDNA sequence BC055324 protein-coding 105244044 XR_865820 Gm39728 - - 1 H5|1 predicted gene, 39728 ncRNA 102639652 XR_384723 Gm35913 - - 16 B1|16 predicted gene, 35913 ncRNA 109514 Sle5 - - - systemic lupus erythematosus susceptibility 5 unknown 666160 Gm7957 EG666160 - 7 D3|7 predicted gene 7957 pseudo 30878 Mm.29262 NM_013912 ENSMUSG00000037010 Apln 6030430G11Rik|Apel - X|X A5 apelin protein-coding 68617 Mm.33421 NM_172963 ENSMUSG00000052105 Mtcl1 1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25 - 17|17 E1.1 microtubule crosslinking factor 1 protein-coding 665610 Mm.425462 XR_001778180 Gm7710 EG665610 - 7|7 D1 predicted gene 7710 unknown 66248 Mm.144218 NM_025442 ENSMUSG00000036632 Alg5 1500026A19Rik|2600005J22Rik|AV009521|AV170001|AW545564 - 3|3 C asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase) protein-coding 493156 Si5lq1 - - 1 68.38 cM serum IGFBP-5 level QTL 1 unknown 666228 Gm7991 EG666228 - 14|14 B predicted gene 7991 protein-coding 61994 D4Mit339 - - 4 66.64 cM DNA segment, Chr 4, Massachusetts Institute of Technology 339 unknown 18943 Pnlf5 - - - prenatal lethal function 5 unknown 108169077 XR_001784999 LOC108169077 - - 5 G2 uncharacterized LOC108169077 ncRNA 333789 Mm.332398 NM_001024917 ENSMUSG00000037795 N4bp2 B3bp|E430014I16|Gm1791|Gm868 - 5|5 C3.1 NEDD4 binding protein 2 protein-coding 667954 Gm8895 EG667954 - 12|12 E serine (or cysteine) preptidase inhibitor, clade A, member 1B pseudogene pseudo 100861709 Gm21155 - - Y|Y predicted gene, 21155 protein-coding 102640915 Gm36866 - - Y|Y predicted gene, 36866 protein-coding 73425 Mm.417844 NR_045732 ENSMUSG00000086887 1700060C16Rik - - 6|6 G3 RIKEN cDNA 1700060C16 gene ncRNA 381325 NM_199365 5330438I03Rik Gm985 - 1|1 H2.3 RIKEN cDNA 5330438I03 gene protein-coding 102637178 XR_377094 Gm34057 - - 5 G1.3|5 predicted gene, 34057 ncRNA 53020 CA9.1 - - - DNA segment, CA9.1 unknown 102632609 XR_870876 Gm30639 - - 9 C|9 predicted gene, 30639 ncRNA 102636208 XR_381909 Gm33341 - - 12 F1|12 predicted gene, 33341 ncRNA 105244924 XR_872837 Gm40446 - - 12 C3|12 predicted gene, 40446 ncRNA 61773 D3Mit274 - - 3 22.35 cM DNA segment, Chr 3, Massachusetts Institute of Technology 274 unknown 665829 Tubb4b-ps2 EG665829|Gm7811|Tubb2c-ps2 - 1|1 A5 tubulin, beta 4B class IVB, pseudogene 2 pseudo 235505 Mm.32955 NM_153098 ENSMUSG00000046186 Cd109 9930012E15Rik|AI480638|GARP - 9|9 E1 CD109 antigen protein-coding 110061 Gsh3 Gsh-3 - - genomic screened homeobox 3 protein-coding 100417920 Gm14932 - - X|X E3 ubiquitin-conjugating enzyme E2W (putative) pseudogene pseudo 331529 Mm.271555 NM_183320 ENSMUSG00000094004 Gm5128 4930481M05|EG331529 - X F1|X predicted gene 5128 protein-coding 62429 D10Mit247 - - 10 5.81 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 247 unknown 74486 Mm.458474 NM_148958 ENSMUSG00000040875 Osbpl10 4933433D06Rik|C820004B04Rik|OPR-10|ORP-10 - 9|9 F3 oxysterol binding protein-like 10 protein-coding 116886 Pgia11 - - 18 51.91 cM proteoglycan induced arthritis 11 unknown 102633250 Astx2 Gm14952 - X|X 49.81 cM amplified spermatogenic transcripts X encoded 2 protein-coding 102639062 XR_387598 Gm35465 - - 5 F|5 predicted gene, 35465 ncRNA 654796 Mm.57202 NR_015562 ENSMUSG00000097726 9530036O11Rik - - 5|5 B1 RIKEN cDNA 9530036O11Rik ncRNA 668993 Csnk2a1-ps Csnk2a1-rs2|EG668993 - X|X A1.2 casein kinase 2, alpha 1, pseudogene pseudo 68209 Mm.246200 NM_026616 ENSMUSG00000024925 Rnaseh2c 1500026D16Rik|AYP1 - 19|19 A ribonuclease H2, subunit C protein-coding 257840 Olfr1017-ps1 - - 2|2 D olfactory receptor 1017, pseudogene 1 pseudo 359904 DXMgc55 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 55 unknown 12643 Mm.440523 NM_007689 ENSMUSG00000039084 Chad SLRR4A - 11 D|11 58.9 cM chondroadherin protein-coding 100463527 Gm20596 Hspd1-22p - 17 C|17 23.99 cM heat shock protein 1 (chaperonin) pseudogene 22 pseudo 102466229 NR_106084 ENSMUSG00000098381 Mir7225 Gm27499|mmu-mir-7225 - 3|3 F2.2 microRNA 7225 ncRNA 231386 Mm.196325 NM_177680 ENSMUSG00000035851 Ythdc1 A730098D12Rik|C80342|mKIAA1966 - 5|5 E1 YTH domain containing 1 protein-coding 432985 Mm.491078 NR_002868 Gm5476 EG432985|Kb17P - 15 F2|15 type II keratin Kb17P pseudogene pseudo 100038641 Mm.100112 Gm10452 - - X D|X predicted gene 10452 unknown 751552 NR_030426 ENSMUSG00000076396 Mir667 Mirn667|mir-667|mmu-mir-667 - 12 F1|12 microRNA 667 ncRNA 14673 Mm.370185 NM_010302 ENSMUSG00000000149 Gna12 AI414047|AI504261|Galpha12 - 5 G2|5 79.3 cM guanine nucleotide binding protein, alpha 12 protein-coding 70081 Mm.245648 NM_001256493 ENSMUSG00000078546 Zfp995 2210404O09Rik - 17|17 A3.3 zinc finger protein 995 protein-coding 104155 Lamr2 LBP110 - - laminin receptor 2 protein-coding 108168916 LOC108168916 - - 3 E2 40S ribosomal protein S18 pseudogene pseudo 100416169 Gm17955 - - 3|3 B predicted gene, 17955 pseudo 112153 Skts2 - - 7 73.19 cM skin tumor susceptibility 2 unknown 66196 Mm.288689 NM_025414 ENSMUSG00000020527 Myo19 1110055A02Rik|Myohd1 - 11|11 C myosin XIX protein-coding 16613 Mm.443378 NM_010640 ENSMUSG00000044485 Klk1b11 Klk11|mGK-11 - 7 B3|7 28.48 cM kallikrein 1-related peptidase b11 protein-coding 100526533 NR_037236 ENSMUSG00000093081 Mir3075 mir-3075|mmu-mir-3075 - 14 A3|14 15.06 cM microRNA 3075 ncRNA 102636748 Gm28171 - - Y|Y predicted gene 28171 protein-coding 22276 Mm.3160 NM_009479 ENSMUSG00000030979 Uros AI415298|UROIIIS|Uros3 - 7 F3|7 77.26 cM uroporphyrinogen III synthase protein-coding 69893 Mm.28354 NM_027250 ENSMUSG00000048351 Coa7 2010305A19Rik|AI451324|D4Ertd796e|Selrc1 - 4 C7|4 50.44 cM cytochrome c oxidase assembly factor 7 protein-coding 102639955 XR_383420 Gm36146 - - 14 C1|14 predicted gene, 36146 ncRNA 102634487 XR_391166 Gm32059 - - 7 A2|7 predicted gene, 32059 ncRNA 102640451 XR_001780399 LOC102640451 - - 11 E2 uncharacterized LOC102640451 ncRNA 360223 jams1 - - 10|10 juvenile audiogenic monogenic seizures 1 unknown 224619 Mm.275150 NM_153792 ENSMUSG00000052752 Traf7 RFWD1 - 17|17 A3.3 TNF receptor-associated factor 7 protein-coding 493072 Lith7 - - 10 51.15 cM lithogenic gene 7 unknown 622512 Mm.485954 Gm6328 EG622512 - 9|9 E3.3 predicted gene 6328 unknown 100038638 Mm.368431 NR_033481 ENSMUSG00000096946 Fmr1os Asfmr1|Gm10474 - X A7.1|X fragile X mental retardation syndrome 1, opposite strand ncRNA 545288 Mm.297048 NM_001024719 ENSMUSG00000062624 Cyp2c67 C730004C24Rik - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 67 protein-coding 102638864 Gm29369 - - Y|Y predicted gene 29369 ncRNA 110306 Int40 Int-40 - - mammary tumor integration site 40 protein-coding 13830 Mm.295284 NM_013515 ENSMUSG00000026880 Stom Epb7.2 - 2 B|2 23.53 cM stomatin protein-coding 668208 Mm.487241 NM_001243167 ENSMUSG00000070908 Gm13288 - - 4 C4|4 predicted gene 13288 protein-coding 277343 Mm.383292 NM_001080550 ENSMUSG00000070533 Wfdc8 Gm706 - 2|2 H3 WAP four-disulfide core domain 8 protein-coding 668647 Klk1b19-ps Gk19|Klk-ps8|mGK-19 - 7 B3|7 28.53 cM kallikrein 1-related peptidase b19, pseudogene pseudo 100503771 Gm14541 - - X|X 21.25 cM predicted gene 14541 pseudo 328075 Mm.447832 NR_046080 ENSMUSG00000112663 C630031E19Rik C630031E19 - 12|12 A2 RIKEN cDNA C630031E19 gene ncRNA 545693 Mm.441388 NM_001039595 ENSMUSG00000095409 Gm13043 - - 4|4 E1 predicted gene 13043 protein-coding 667782 Gm8810 - - 17|17 B1 predicted gene 8810 pseudo 628103 Gm14071 - - 2|2 F3 predicted gene 14071 pseudo 381650 Mm.159453 NR_028429 ENSMUSG00000102644 Thap6 4930534K21Rik|AI448650 - 5|5 E2 THAP domain containing 6 pseudo 102639390 Gm35716 - - 17|17 predicted gene, 35716 ncRNA 102641931 Mm.445064 XR_876750 Gm38585 - - 17 B1|17 predicted gene, 38585 ncRNA 105244914 XR_872800 LOC105244914 - - 12 C2 uncharacterized LOC105244914 ncRNA 85106 D12Mit11 - - 12 8.23 cM DNA segment, Chr 12, Massachusetts Institute of Technology 11 unknown 111180 Zfp73-rs1 - - - zinc finger protein 73, related sequence 1 pseudo 27209 NR_000002 ENSMUSG00000065219 Snord32a Rnu32|Rnu32a|U32|U32A - 7|7 B3 small nucleolar RNA, C/D box 32A snoRNA 22239 Mm.306021 NM_011674 ENSMUSG00000032854 Ugt8a AI850488|AW455908|Cgt|Ugt8|mCerGT - 3|3 G1 UDP galactosyltransferase 8A protein-coding 12873 Mm.1135 NM_007753 ENSMUSG00000001865 Cpa3 MC-CPA - 3 A2|3 6.25 cM carboxypeptidase A3, mast cell protein-coding 77890 6720407P12Rik - - 11|11 RIKEN cDNA 6720407P12 gene protein-coding 56030 Mm.186943 NM_018872 ENSMUSG00000026116 Tmem131 2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257 - 1 B|1 15.42 cM transmembrane protein 131 protein-coding 102636117 Gm33279 - - 15|15 predicted gene, 33279 ncRNA 102631529 Gm29844 - - 13 C1|13 predicted gene, 29844 pseudo 56872 Mm.390143 NM_020264 ENSMUSG00000032099 Pate4 9530004K16Rik|Pate-B|Svs7 - 9|9 A4 prostate and testis expressed 4 protein-coding 100039973 XM_006542760 Gm13309 - - 4 A5|4 predicted gene 13309 protein-coding 110419 Txln-rs1 Il14-rs1 - - taxilin, related sequence 1 protein-coding 193796 Mm.45047 NM_172132 ENSMUSG00000024201 Kdm4b 4732474L06Rik|Jmjd2b - 17|17 D lysine (K)-specific demethylase 4B protein-coding 258110 Olfr1117-ps1 GA_x5J8B7TY7N2-4-429|GA_x6K02T2Q125-48769330-48770299|MOR264-10P|MOR264-27_p - 2|2 D olfactory receptor 1117, pseudogene 1 pseudo 320170 A130048G24Rik - - 1|1 RIKEN cDNA A130048G24 gene protein-coding 100504174 Gm15682 - - 5|5 43.94 cM predicted gene 15682 protein-coding 11814 Mm.390161 NM_023114 ENSMUSG00000032081 Apoc3 apo-CIII|apoC-III - 9 A5.2|9 25.36 cM apolipoprotein C-III protein-coding 56582 116m19T7 - - - DNA segment, 116m19T7 unknown 109279992 LOC109279992 Mm770 - - VISTA enhancer mm770 biological-region 320865 Mm.241965 NM_001081299 ENSMUSG00000040420 Cdh18 B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol - 15|15 A2 cadherin 18 protein-coding 108426 Xmmv40 Env-40|Xmmv-40 - - xenotropic-MCF leukemia virus 40 other 319812 Mm.446393 NR_045988 9430018G01Rik - - 6|6 B2.1 RIKEN cDNA 9430018G01 gene ncRNA 359886 DXMgc10 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 10 unknown 735277 NR_030479 ENSMUSG00000076271 Mir697 Mirn697|mmu-mir-697 - 4 D2.2|4 microRNA 697 ncRNA 319396 D230044P21Rik - - 2|2 RIKEN cDNA D230044P21 gene protein-coding 77654 Mm.38832 C430049A07Rik - - 3|3 RIKEN cDNA C430049A07 gene protein-coding 72563 Mm.396500 2700068H02Rik - - 4|4 C7 RIKEN cDNA 2700068H02 gene ncRNA 100042122 Gm3681 - - X A3.1|X predicted gene 3681 pseudo 23802 Mm.34641 NM_011787 ENSMUSG00000031751 Amfr gp78 - 8 C5|8 45.96 cM autocrine motility factor receptor protein-coding 108168609 XM_017318816 LOC108168609 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 108167659 XR_001779208 LOC108167659 - - 1 D uncharacterized LOC108167659 ncRNA 102636338 XR_871136 4930500F10Rik - - 9|9 F1 RIKEN cDNA 4930500F10 gene ncRNA 619297 Mm.489394 XM_003945442 ENSMUSG00000108900 C430049E01Rik - - 8 B3.3|8 RIKEN cDNA C430049E01 gene protein-coding 109279850 LOC109279850 Mm7 - - VISTA enhancer mm7 biological-region 85068 D5Mit34 D16Mit1001 - 5|5 DNA segment, Chr 5, Massachusetts Institute of Technology 34 unknown 70396 Mm.285783 NM_133728 ENSMUSG00000026095 Asnsd1 2210409M21Rik - 1|1 C1.1 asparagine synthetase domain containing 1 protein-coding 209824 Mm.377233 NM_203489 ENSMUSG00000066723 Vmn1r183 Gm476|V1rd15 - 7|7 A3 vomeronasal 1 receptor 183 protein-coding 100418247 Gm19097 - - 14|14 D1 eukaryotic translation initiation factor 3, subunit E pseudogene pseudo 105245969 XR_875393 Gm41340 - - 15 D1|15 predicted gene, 41340 ncRNA 114272 Manh8 QTL-SH6.2 - - mandible shape 8 unknown 100312516 Vmn1r-ps87 - - 7 A3|7 vomeronasal 1 receptor, pseudogene 87 pseudo 105243920 XR_865408 Gm39637 - - 1 C1.1|1 predicted gene, 39637 ncRNA 54698 Mm.42791 NM_019465 ENSMUSG00000032021 Crtam - - 9 A5.1|9 21.79 cM cytotoxic and regulatory T cell molecule protein-coding 102632038 XR_378080 Gm30213 - - 6 G1|6 predicted gene, 30213 ncRNA 102639253 XR_374847 Gm35606 - - 2 E2|2 predicted gene, 35606 ncRNA 62326 D6Mit162 - - 6 30.23 cM DNA segment, Chr 6, Massachusetts Institute of Technology 162 unknown 50850 Mm.19804 NM_016962 ENSMUSG00000024068 Spast Spg4|mKIAA1083 - 17|17 E2 spastin protein-coding 76719 Mm.136418 NM_001081045 ENSMUSG00000018412 Kansl1 1700081L11Rik|9430041J06Rik|mKIAA1267 - 11|11 E1 KAT8 regulatory NSL complex subunit 1 protein-coding 27176 Mm.328601 NM_013721 ENSMUSG00000062647 Rpl7a Surf3 - 2 A3|2 19.1 cM ribosomal protein L7A protein-coding 258894 Mm.330379 NM_146892 ENSMUSG00000075100 Olfr1223 MOR233-10 - 2|2 E1 olfactory receptor 1223 protein-coding 97230 Mm.5692 C78228 - - - expressed sequence C78228 protein-coding 105247676 XR_888709 LOC105247676 - - - uncharacterized LOC105247676 ncRNA 107988020 LOC107988020 - - - C4a promoter region biological-region 27531 D0Mnp1 MUS232-1 - - DNA segment, Montpellier 1 unknown 66584 Mm.273117 2610104F20Rik - - 11|11 RIKEN cDNA 2610104F20 gene protein-coding 105246216 XR_876607 Gm41530 - - 17 A1|17 predicted gene, 41530 ncRNA 102580 Mm.160035 NM_133981 ENSMUSG00000032059 Alg9 8230402H15Rik|AI747665|B430313H07Rik|Dibd1 - 9|9 A5.3 asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase) protein-coding 100035566 T1pdty - - 17 60.67 cM type I polydactyly unknown 13009 Mm.17235 NM_013808 ENSMUSG00000030470 Csrp3 CRP3|MLP|MMLP - 7|7 B4 cysteine and glycine-rich protein 3 protein-coding 546611 Mm.390692 NM_001166651 ENSMUSG00000090799 Klhl33 EG546611 - 14|14 C1 kelch-like 33 protein-coding 66665 Mm.140749 NM_028137 ENSMUSG00000039693 Msantd3 2410046L14Rik|2810429P03Rik|5730528L13Rik|Mysantd3 - 4|4 B1 Myb/SANT-like DNA-binding domain containing 3 protein-coding 105243302 XR_879242 Gm39262 - - 8 E1|8 predicted gene, 39262 ncRNA 16295 In(5)9Rk-d In(5)9Rk|In9Rk - - inversion, Chr 5, Roderick 9, distal other 236511 Mm.30800 NM_153403 ENSMUSG00000041530 Ago1 Eif2c1 - 4|4 D2.2 argonaute RISC catalytic subunit 1 protein-coding 100043078 Gm13916 - - 2|2 E3 predicted gene 13916 pseudo 625801 Gm6625 EG625801 - 8|8 C3 predicted gene 6625 pseudo 105246805 XR_878996 Gm42029 - - 8 C2|8 predicted gene, 42029 ncRNA 53300 16.MMHAP64FLF1.seq - - - DNA segment, 16.MMHAP64FLF1.seq unknown 77981 Mm.138039 NM_001033183 B230110C06Rik - - 14|14 A2 RIKEN cDNA B230110C06 gene ncRNA 102633585 Gm31375 - - 9|9 predicted gene, 31375 ncRNA 102638659 XR_389204 Gm35170 - - 11 E2|11 predicted gene, 35170 ncRNA 97171 C81376 - - - expressed sequence C81376 protein-coding 102637980 XR_380569 Gm34659 - - 10 B5.3|10 predicted gene, 34659 ncRNA 102639513 Gm35810 - - 17|17 predicted gene, 35810 ncRNA 109280043 LOC109280043 Mm321 - - VISTA enhancer mm321 biological-region 27502 B9L14T - - - DNA segment, B9L14T unknown 218035 Mm.27389 NM_172120 ENSMUSG00000041236 Vps41 AI317346|Vam2|mVam2 - 13 A2|13 6.75 cM VPS41 HOPS complex subunit protein-coding 78313 2410006F04Rik - - - RIKEN cDNA 2410006F04 gene unknown 108167309 LOC108167309 - - 2 H Nkx2-2 Hedgehog-responsive enhancer biological-region 100034935 Vtbt11 - - 11 4.7 cM vertebral trabecular bone trait 11 unknown 110927 Hmgn1-rs18 Hmg14-rs18 - - high mobility group nucleosomal binding domain 1, related sequence 18 protein-coding 102639813 XR_374966 Gm29010 - - 2 F1|2 predicted gene 29010 ncRNA 66612 Mm.180546 NM_025661 ENSMUSG00000038150 Ormdl3 2810011N17Rik|AI315223 - 11|11 D ORM1-like 3 (S. cerevisiae) protein-coding 67213 Mm.28858 NM_026036 ENSMUSG00000032434 Cmtm6 2810051A14Rik|AA536733|Cklfsf6 - 9|9 F3 CKLF-like MARVEL transmembrane domain containing 6 protein-coding 78579 D530043N20Rik - - 2|2 RIKEN cDNA D530043N20 gene protein-coding 17983 nd - - - nodding unknown 19303 Mm.18714 NM_011223 ENSMUSG00000029528 Pxn AW108311|AW123232|Pax - 5 F|5 56.1 cM paxillin protein-coding 64656 Mm.168680 NM_024174 ENSMUSG00000023723 Mrps23 D11Bwg1153e|MRP-S23|Rpms23|S23mt - 11 C|11 52.4 cM mitochondrial ribosomal protein S23 protein-coding 70469 2610311E24Rik - - 10|10 RIKEN cDNA 2610311E24 gene protein-coding 102632949 Gm30894 - - 5|5 predicted gene, 30894 protein-coding 102639692 Gm35945 - - 2|2 predicted gene, 35945 ncRNA 105244757 XR_001785060 Gm40310 - - 5 C3.1|5 predicted gene, 40310 ncRNA 319701 Mm.120672 NM_176982 ENSMUSG00000044966 Fbxo48 A630050E13Rik - 11|11 A2 F-box protein 48 protein-coding 111562 Xmv15 Xmv-15 - - xenotropic murine leukemia virus 15 other 100035846 W10q1 - - - weight 10 weeks QTL 1 unknown 74576 Mm.483382 4731417B20Rik - - 5|5 G2 RIKEN cDNA 4731417B20 gene unknown 171275 Mm.377227 NM_134241 ENSMUSG00000071490 Vmn1r212 V1rh18 - 13|13 A3.1 vomeronasal 1 receptor 212 protein-coding 109280053 LOC109280053 Mm448 - - VISTA enhancer mm448 biological-region 108147 Mm.38010 NM_026195 ENSMUSG00000026192 Atic 2610509C24Rik|AA536954|AW212393 - 1|1 C3 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 100416672 Gm18183 - - 1|1 F ring finger protein 138 pseudogene pseudo 623414 Gm6428 EG623414 - 1|1 B predicted pseudogene 6428 protein-coding 791300 Mm.482680 Gm9752 - - - predicted gene 9752 unknown 260344 Phf5b-ps Phf5b - 7|7 A3 PHD finger protein 5B, pseudogene pseudo 18583 Mm.355614 NM_008802 ENSMUSG00000069094 Pde7a AU015378|AW047537 - 3 A2|3 5.36 cM phosphodiesterase 7A protein-coding 109663 Mm.37692 NM_001024842 ENSMUSG00000001656 Hoxc11 Hox-3.7 - 15 F3|15 58.02 cM homeobox C11 protein-coding 100312533 Vmn1r-ps101 - - 13 A3.1|13 8.62 cM vomeronasal 1 receptor, pseudogene 101 pseudo 16425 Mm.182043 NM_010582 ENSMUSG00000037254 Itih2 AI747202|Intin2|Itih-2 - 2 A1|2 6.89 cM inter-alpha trypsin inhibitor, heavy chain 2 protein-coding 76786 Mm.373813 NR_131048 ENSMUSG00000028700 2510003B16Rik - - 4|4 D1 RIKEN cDNA 2510003B16 gene ncRNA 171543 Mm.210125 NM_138313 ENSMUSG00000040093 Bmf AW260063|AW411872 - 2|2 E5 BCL2 modifying factor protein-coding 105246942 XR_880494 Gm42136 - - 5 E5|5 predicted gene, 42136 ncRNA 77428 Mm.405630 NR_029463 9430083A17Rik - - 13|13 A5 RIKEN cDNA 9430083A17 gene ncRNA 217647 Rpl7a-ps1 EG217647|Gm4807 - 12|12 C1 ribosomal protein L7A, pseudogene 1 pseudo 217353 Mm.286963 NM_145439 ENSMUSG00000025572 Tmc6 D11Ertd204e|EVER1 - 11 E2|11 82.96 cM transmembrane channel-like gene family 6 protein-coding 100121 Mm.275413 NM_146142 ENSMUSG00000035517 Tdrd7 5730495N10Rik|AI447470|PCTAIRE2BP - 4|4 B1 tudor domain containing 7 protein-coding 110120398 LOC110120398 - - - VISTA enhancer mm503 biological-region 320904 D630012G11Rik - - 12|12 RIKEN cDNA D630012G11 gene protein-coding 492929 Tmevd7 - - 5 68.16 cM Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 7 unknown 100312563 Vmn1r-ps135 - - 13|13 A3.1 vomeronasal 1 receptor, pseudogene 135 pseudo 102641233 XR_867359 Gm38542 - - 3 E3|3 predicted gene, 38542 ncRNA 21377 Mm.439848 Tbrg2 TB-9 - - transforming growth factor beta regulated gene 2 protein-coding 102640426 XR_877190 Gm36490 - - 18 A1|18 predicted gene, 36490 ncRNA 110275 Lvis4 - - - lymphoid viral insertion site 4 protein-coding 75305 Mm.391478 NM_029245 ENSMUSG00000014747 Ankrd53 4930564N15Rik - 6 C3|6 ankyrin repeat domain 53 protein-coding 100862320 Gm21642 - - Y|Y predicted gene, 21642 protein-coding 101056091 XM_011251062 Gm29024 - - Y B|Y predicted gene 29024 protein-coding 105244998 XR_870664 Gm40513 - - 9 A5.1|9 predicted gene, 40513 ncRNA 105242600 XR_868804 Gm38768 - - 6 A1|6 predicted gene, 38768 ncRNA 674318 Gm16420 EG665122 - X|X E1 SET translocation pseudogene pseudo 76982 Mm.491098 NM_178399 ENSMUSG00000067879 3110035E14Rik AI415019|AV164974|R75066 - 1|1 A2 RIKEN cDNA 3110035E14 gene protein-coding 192099 Stheal2 Sth2 - - soft tissue heal 2 unknown 14058 Mm.262589 NM_007972 ENSMUSG00000031444 F10 Cf10|fX - 8 A1.1|8 5.73 cM coagulation factor X protein-coding 26927 Mm.151239 NM_012020 ENSMUSG00000050397 Foxl2 AU045128|BPES|PINTO|Pfrk - 9|9 E3.3 forkhead box L2 protein-coding 74061 Mm.399501 NR_046038 ENSMUSG00000085122 4933404K08Rik - - 13|13 A3.1 RIKEN cDNA 4933404K08 gene ncRNA 73591 Mm.65499 NR_045936 ENSMUSG00000101261 1700109I08Rik - - 14|14 B RIKEN cDNA 1700109I08 gene ncRNA 669278 Gm9448 - - 14|14 E2.3 SNW domain containing 1 pseudogene pseudo 102638609 XR_376168 Gm35133 - - 3 H2|3 predicted gene, 35133 ncRNA 102636139 XR_377003 Gm33293 - - 5 C3.1|5 predicted gene, 33293 ncRNA 100042355 XM_001477899 Gm10705 - - 3 F1|3 predicted gene 10705 protein-coding 100861665 Gm21117 - - Y|Y predicted gene, 21117 protein-coding 100043342 Gm13134 - - 4|4 E2 predicted gene 13134 unknown 105244331 XR_866871 Gm39962 - - 2 H1|2 predicted gene, 39962 ncRNA 74734 Mm.20323 NM_001081105 ENSMUSG00000029204 Rhoh 5830400A04Rik|AU019774|Arhh - 5|5 C3.1 ras homolog family member H protein-coding 17895 Myk103 Myk-103 - - sequence flanking transgenic insert protein-coding 20914 sty - - - small thymus unknown 67285 Mm.235398 NM_026072 ENSMUSG00000021715 Cwc27 3110009E13Rik|NY-CO-10|Sdccag10 - 13|13 D1 CWC27 spliceosome-associated protein protein-coding 114151 Szs13 - - - seizure susceptibility 13 unknown 20513 Mm.6257 NM_009200 ENSMUSG00000005357 Slc1a6 EAAT4 - 10 C1|10 39.72 cM solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 protein-coding 68184 Mm.28549 NM_026603 ENSMUSG00000023106 Denr 1500003K04Rik - 5|5 F density-regulated protein protein-coding 20335 Mm.325350 NM_011343 ENSMUSG00000078974 Sec61g - - 11|11 A2 SEC61, gamma subunit protein-coding 621858 Gm11805 - - 4|4 A1 high mobility group box 3 pseudogene pseudo 105246011 Mm.399209 XR_875552 4930445N06Rik - - 15|15 E3 RIKEN cDNA 4930445N06 gene ncRNA 62383 D14Mit126 - - 14 11.94 cM DNA segment, Chr 14, Massachusetts Institute of Technology 126 unknown 60787 D3Mit44 - - 3 72.43 cM DNA segment, Chr 3, Massachusetts Institute of Technology 44 unknown 103793 Mm.40874 9430098F02Rik AI593758 - - RIKEN cDNA 9430098F02 gene protein-coding 623325 Gm13349 - - 2|2 A3 predicted gene 13349 pseudo 100036082 W6q4 - - - weight 6 weeks QTL 4 unknown 100034917 Lmblgq1 - - 1 58.18 cM limb length QTL 1 unknown 102634188 Gm29639 - - Y|Y predicted gene 29639 protein-coding 72891 Mm.104764 NM_183094 ENSMUSG00000031362 Xlr4c 2900036K24Rik - X|X A7.3 X-linked lymphocyte-regulated 4C protein-coding 102465610 NR_105975 ENSMUSG00000098890 Mir7008 Gm27752|mmu-mir-7008 - 3|3 A3 microRNA 7008 ncRNA 18538 Mm.7141 NM_011045 ENSMUSG00000027342 Pcna - - 2 F2|2 64.15 cM proliferating cell nuclear antigen protein-coding 101060 AI118068 - - - expressed sequence AI118068 unknown 111232 Hmgb1-rs5 Hmg-1RV-D|Hmg1-rs5 - - high mobility group box 1, related sequence 5 pseudo 55949 Mm.2718 NM_018796 ENSMUSG00000025967 Eef1b2 2810017J07Rik|Eef1b - 1|1 C2 eukaryotic translation elongation factor 1 beta 2 protein-coding 97107 C86171 - - - expressed sequence C86171 unknown 102635744 XM_006511607 ENSMUSG00000099564 Gm28729 - - 9 E3.3|9 predicted gene 28729 protein-coding 12256 Bxv1 Bxv-1|Xmv-43|Xmv43 - - B10 xenotropic virus 1 other 74429 Mm.399502 NR_046060 ENSMUSG00000106762 4930478P22Rik 4933405A14Rik - 5|5 B2 RIKEN cDNA 4930478P22 gene ncRNA 545824 Mm.380068 NM_001159693 ENSMUSG00000056586 Zar1l XM_359419 - 5|5 G3 zygote arrest 1-like protein-coding 100316776 NR_035479 ENSMUSG00000093336 Mir1954 mmu-mir-1954 - 2 B|2 22.09 cM microRNA 1954 ncRNA 100855 Mm.486203 NM_133910 ENSMUSG00000029192 Tbc1d14 2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322 - 5 B3|5 19.15 cM TBC1 domain family, member 14 protein-coding 100861620 Gm21082 - - 4 E1|4 predicted gene, 21082 pseudo 20454 Mm.38248 NM_011375 ENSMUSG00000056091 St3gal5 3S-T|Siat9|[a]2 - 6|6 C1 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 209011 Mm.292957 NM_153056 ENSMUSG00000025138 Sirt7 - - 11|11 E2 sirtuin 7 protein-coding 111946 Pltr13 - - - polytropic long terminal repeat containing proviral locus 13 other 100503621 Gm14865 - - X A1.1|X 4.1 cM ubiquitin-conjugating enzyme E2 E3-like pseudo 102465664 NR_106063 ENSMUSG00000098357 Mir7094-2 Gm27508|mmu-mir-7094-2 - 12|12 F2 microRNA 7094-2 ncRNA 102639725 Gm35968 - - 6|6 predicted gene, 35968 ncRNA 59031 Mm.28934 NM_021528 ENSMUSG00000036599 Chst12 AI595374|C4S-2|C4ST2 - 5|5 G2 carbohydrate sulfotransferase 12 protein-coding 73823 Gm17014 - - 2|2 C3 predicted gene 17014 pseudo 492968 Hdlq19 - - 2 75.41 cM HDL QTL 19 unknown 666403 Gm12091 - - 11|11 A3.3 ribosomal protein S2 pseudogene pseudo 208092 Mm.306673 NM_001085498 ENSMUSG00000025371 Chmp6 2400004G01Rik - 11|11 E2 charged multivesicular body protein 6 protein-coding 246192 Ltnr3 - - - lentinan responsive 3 protein-coding 100040471 Gm2792 - - 17 A1|17 tubby like protein 4 pseudogene pseudo 52639 Mm.35817 NM_145940 ENSMUSG00000041895 Wipi1 4930533H01Rik|AW411817|D11Ertd498e - 11 E1|11 72.18 cM WD repeat domain, phosphoinositide interacting 1 protein-coding 102635500 XR_379493 Gm32820 - - 9 B|9 predicted gene, 32820 ncRNA 21782 Tfdp1-ps - - 1|1 C4 transcription factor Dp 1, pseudogene pseudo 100038686 Gm10426 - - - predicted gene 10426 protein-coding 100042395 Gm20913 - - Y|Y predicted gene, 20913 protein-coding 67097 Mm.275810 NM_025963 ENSMUSG00000052146 Rps10 2210402A09Rik - 17|17 A3.3 ribosomal protein S10 protein-coding 102635021 XR_379369 Gm32462 - - 9 A5.3|9 predicted gene, 32462 ncRNA 102635043 XR_377667 Gm32479 Gm44447 - 6 B3|6 predicted gene, 32479 ncRNA 100416726 Gm18216 - - 14|14 C1 predicted gene, 18216 pseudo 102638269 Gm34871 - - 6|6 predicted gene, 34871 ncRNA 61099 D1Mit492 - - 1 50.84 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 492 unknown 102638954 Gm35389 - - 14 B|14 predicted gene, 35389 pseudo 237958 Mm.117063 NM_199019 ENSMUSG00000049506 Sppl2c 4933407P14Rik|IMP5 - 11|11 E1 signal peptide peptidase 2C protein-coding 102640198 Gm29036 - - 5|5 predicted gene 29036 pseudo 13273 Del(14)15H Del15H - - deletion, Chr 14, Harwell 15 other 114085 Abhr3 - - 7 1.91 cM allergen-induced bronchial hyperresponsiveness 3 unknown 21138 T(2;4)32Ad T32Ad - - reciprocal translocation, Chr 2 and 4, Adler 32 other 668187 Gm9030 EG668187 - 10|10 D2 cell division cycle 5-like pseudogene pseudo 102640872 Gm29280 - - Y|Y predicted gene 29280 protein-coding 493053 Fembrs1 - - 2 59.34 cM femur breaking strength 1 unknown 100035783 Orgwq8 - - 11 9.61 cM organ weight QTL 8 unknown 107548 Bkm6 Bkm-6 - - banded krait minor satellite DNA 6 other 258059 Olfr1185-ps1 MOR230-10P|MOR230-11 - 2|2 D olfactory receptor 1185, pseudogene 1 pseudo 13799 Mm.4298 NM_010134 ENSMUSG00000039095 En2 BB131122|En-2 - 5 B1|5 13.94 cM engrailed 2 protein-coding 359857 DXMgc7 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 7 unknown 404595 AL118294 - - - expressed sequence AL118294 unknown 668931 Gm14227 - - 2|2 H1 proteasome (prosome, macropain) subunit, beta type 3 pseudogene pseudo 102635526 XR_378160 Gm32838 - - 6 G3|6 predicted gene, 32838 ncRNA 80292 Mm.100116 NM_030260 ENSMUSG00000034430 Zxdc A930012H20|B930086F11Rik|BC003332 - 6 D1|6 ZXD family zinc finger C protein-coding 100041119 Gm3149 - - 14 A1|14 predicted gene 3149 protein-coding 102638646 XM_017315653 Gm35160 - - 13 A3.3|13 predicted gene, 35160 pseudo 100035179 Ptnu4 - - 15 30.86 cM proteinuria 4 unknown 102635662 XR_377538 Gm32942 - - 6 B1|6 predicted gene, 32942 ncRNA 71569 Mm.387335 9030613N10Rik - - 10|10 RIKEN cDNA 9030613N10 gene protein-coding 259070 Mm.377821 NM_147067 ENSMUSG00000051414 Olfr829 MOR147-1 - 9|9 A2 olfactory receptor 829 protein-coding 319796 B930049G02Rik - - 2|2 RIKEN cDNA B930049G02 gene protein-coding 620297 Trav6n-6 Gm10895 - 14|14 C2 T cell receptor alpha variable 6N-6 other 100462961 Gm16149 - - 10 A1|10 2.06 cM mitochondrial ribosomal protein S36 pseudogene pseudo 100041114 Mm.484655 Gm3146 - - 2 B|2 predicted gene 3146 unknown 100124347 Traj41 Gm16921 - 14|14 C2 T cell receptor alpha joining 41 other 436196 XM_488332 Gm5755 EG436196 - X|X A1.2 predicted pseudogene 5755 protein-coding 100039233 Gm14324 - - 2|2 H4 predicted gene 14324 pseudo 66999 Mm.283045 NM_025895 ENSMUSG00000015804 Med28 1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin - 5|5 B3 mediator complex subunit 28 protein-coding 72930 Mm.26134 NM_027531 ENSMUSG00000024500 Ppp2r2b 2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12 - 18|18 B3 protein phosphatase 2, regulatory subunit B, beta protein-coding 100417483 Gm18640 - - 7|7 A1 Ewing sarcoma breakpoint region 1 pseudogene pseudo 102632180 LOC102632180 - - 19 C1 39S ribosomal protein L33, mitochondrial pseudogene pseudo 414067 Mm.355990 NR_033559 ENSMUSG00000068180 AY512915 - - 6|6 D2 cDNA sequence AY512915 ncRNA 667517 Gm8679 Cct6A-1P|EG667517 - 8|8 B1.3 chaperonin containing Tcp1, subunit 6a (zeta) pseudogene pseudo 71542 8430439C15Rik - - 9|9 RIKEN cDNA 8430439C15 gene protein-coding 15007 Mm.88795 NM_010391 ENSMUSG00000067235 H2-Q10 H-2Q10|Q10|Qa10 - 17 B1|17 18.68 cM histocompatibility 2, Q region locus 10 protein-coding 665314 Gm11980 - - 11|11 A1 lactate dehydrogenase A pseudogene pseudo 233912 Mm.475117 NM_146205 ENSMUSG00000042178 Armc5 AW049683|BC032200 - 7|7 F3 armadillo repeat containing 5 protein-coding 110120517 LOC110120517 - - - VISTA enhancer mm1481 biological-region 102635507 Gm32826 - - 4|4 predicted gene, 32826 ncRNA 17418 mn - - - miniature unknown 243743 Mm.444029 NM_175750 ENSMUSG00000029765 Plxna4 9330117B14|Plxa4|mKIAA1550 - 6|6 A3.3 plexin A4 protein-coding 18700 Mm.3781 NM_011081 ENSMUSG00000031381 Piga AI194334|Pig-a - X F5|X 76.49 cM phosphatidylinositol glycan anchor biosynthesis, class A protein-coding 68349 Mm.30113 NM_026688 ENSMUSG00000005510 Ndufs3 0610010M09Rik|CI-30kD - 2|2 E1 NADH dehydrogenase (ubiquinone) Fe-S protein 3 protein-coding 257807 Olfr757-ps1 GA_x5J8B7W5KGR-1115818-1115257 - 17|17 B1 olfactory receptor 757, pseudogene 1 pseudo 192194 Mm.22540 NM_138678 ENSMUSG00000020490 Btnl10 BUTR-1|Butr1 - 11|11 B1.3 butyrophilin-like 10 protein-coding 665561 Gm7688 EG665561 - 8|8 B3.3 eukaryotic translation initiation factor 1 pseudogene pseudo 666730 Gm8261 EG666730 - X F2|X zinc finger, ZZ domain containing 3 pseudogene pseudo 102632488 Mm.109435 NR_136894 ENSMUSG00000100789 Gm29508 - - 12 E|12 predicted gene 29508 ncRNA 70814 Mm.482395 4921506L19Rik - - 10|10 RIKEN cDNA 4921506L19 gene protein-coding 170788 Mm.95700 NM_133239 ENSMUSG00000063681 Crb1 7530426H14Rik|A930008G09Rik - 1 E4|1 60.87 cM crumbs family member 1, photoreceptor morphogenesis associated protein-coding 359893 DXMgc17 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 17 unknown 100035100 Manln6 - - 6 73.86 cM mandible length 6 unknown 100861998 XR_140563 ENSMUSG00000114832 Gm21388 - - 3 A3|3 predicted gene, 21388 ncRNA 108167577 XR_001778742 LOC108167577 - - 8 A1.1 uncharacterized LOC108167577 ncRNA 100418251 Gm19100 - - 18|18 B3 proteasome (prosome, macropain) subunit, alpha type 2 pseudogene pseudo 102637238 Gm27234 - - 9|9 predicted gene 27234 ncRNA 105246724 Mm.124673 XR_878598 Gm29398 - - 1 G1|1 predicted gene 29398 ncRNA 102640019 XR_384215 Gm36194 - - 15 D3|15 predicted gene, 36194 ncRNA 241621 Gm13981 - - 2|2 E5 predicted gene 13981 protein-coding 100035315 Gwth2 - - - growth traits 2 unknown 211652 Mm.31267 NM_170779 ENSMUSG00000018849 Wwc1 AA408228|AU017197|BC037006|Kibra|mKIAA0869 - 11|11 A4 WW, C2 and coiled-coil domain containing 1 protein-coding 26459 Mm.10984 NM_009512 ENSMUSG00000030382 Slc27a5 FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr - 7|7 A1 solute carrier family 27 (fatty acid transporter), member 5 protein-coding 102633039 XR_386093 Gm30960 - - 18 A1|18 predicted gene, 30960 ncRNA 108168318 XM_017317741 Gm46575 Sh2d3ap - 17 D|17 SH2 domain containing 3A pseudogene pseudo 780818 Ighv11-2 - - 12|12 F1 immunoglobulin heavy variable V11-2 other 18169 Mm.57234 NM_010935 ENSMUSG00000038071 Npy6r - - 18 B3|18 23.74 cM neuropeptide Y receptor Y6 protein-coding 102638369 Gm34951 - - 10|10 predicted gene, 34951 ncRNA 100775174 Ighv1-76 Gm16813 - 12 F2|12 62.59 cM immunoglobulin heavy variable 1-76 other 61860 D1Mit372a D1Mit1019|D1Mit372 - 1 6.5 cM DNA segment, Chr 1, Massachusetts Institute of Technology 372a unknown 100216533 NR_030704 ENSMUSG00000092680 Snord55 - - 4 D1|4 small nucleolar RNA, C/D box 55 snoRNA 20771 Mm.30276 NM_009268 ENSMUSG00000060311 Mucl1 Spt-2|Spt2 - 15 F3|15 mucin-like 1 protein-coding 14405 Mm.255292 NM_010252 ENSMUSG00000001260 Gabrg1 GabaA|GabaA/BZ - 5 C3.1|5 37.43 cM gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1 protein-coding 100041412 Mm.351891 NM_001127354 ENSMUSG00000057674 Gm11938 - - 11|11 D predicted gene 11938 protein-coding 105596 Mm.21250 AU020094 - - - expressed sequence AU020094 protein-coding 112114 Tbs2 - - 9 14.79 cM tuberculosis severity 2 unknown 665359 Vmn2r-ps153 - - Y|Y E vomeronasal 2, receptor, pseudogene 153 pseudo 77333 Mm.39931 C030007I01Rik - - 5|5 RIKEN cDNA C030007I01 gene protein-coding 108344 Mtv45 Mtv-45 - - mammary tumor virus locus 45 other 100041100 Gm3138 - - 14 A1|14 predicted gene 3138 pseudo 102635329 Gm28533 - - Y|Y predicted gene 28533 protein-coding 102634644 Gm32180 - - Y|Y predicted gene, 32180 ncRNA 621343 Gm6214 EG621343 - 3|3 H1 zinc finger, CCHC domain containing 10 pseudogene pseudo 66764 4933424N20Rik - - 5|5 RIKEN cDNA 4933424N20 gene protein-coding 620408 Gm6149 EG620408 - 17|17 D lectin, galactose binding, soluble 8 pseudogene pseudo 69239 Mm.246732 NM_027001 ENSMUSG00000024227 Pdzph1 2610034M16Rik|AV114557 - 17|17 D PDZ and pleckstrin homology domains 1 protein-coding 382536 Gm12321 - - 11|11 B4 RNA binding motif protein 7 pseudogene pseudo 67778 Mm.285620 NM_144519 ENSMUSG00000027667 Zfp639 6230400O18Rik|ANC-2H01|ZASC1|Znf639 - 3|3 A3 zinc finger protein 639 protein-coding 102640111 Gm36259 - - 3|3 predicted gene, 36259 pseudo 18286 Mm.330116 NM_013615 ENSMUSG00000026790 Odf2 AI848335|MMTEST29 - 2 B|2 20.79 cM outer dense fiber of sperm tails 2 protein-coding 665811 Gm7799 EG665811 - 3|3 B predicted gene 7799 pseudo 105246889 XR_880241 Gm42092 - - 11 E1|11 predicted gene, 42092 ncRNA 110282 Ctt1 - - - cytotoxic T cell target antigen 1 protein-coding 632745 LOC632745 - - 17|17 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F pseudogene pseudo 96987 C79657 - - - expressed sequence C79657 protein-coding 102636133 XR_381104 Gm12066 - - 11 A3.2|11 14.42 cM predicted gene 12066 ncRNA 112177 Afpq2 - - - abdominal fat percent QTL 2 unknown 111043196 Gm46994 - - 12|12 predicted gene 46994 pseudo 52432 Mm.258739 NM_026391 ENSMUSG00000041769 Ppp2r2d 1300017E19Rik|D7Ertd753e|MDS026 - 7 F4|7 82.95 cM protein phosphatase 2, regulatory subunit B, delta protein-coding 383277 Gm5230 EG383277 - 17|17 E3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105245672 XR_874174 Gm41092 - - 14 A1|14 predicted gene, 41092 ncRNA 232210 Mm.246241 NM_173737 ENSMUSG00000030060 Hmces 8430410A17Rik|C85376 - 6|6 D1 5-hydroxymethylcytosine (hmC) binding, ES cell specific protein-coding 100503041 Mm.329877 NM_177605 ENSMUSG00000074818 Pdzd7 9130207N01|EG435601|Pdzk7 - 19|19 C3 PDZ domain containing 7 protein-coding 20530 Mm.292539 NM_025286 ENSMUSG00000066152 Slc31a2 AI604396|CTR2 - 4|4 B3 solute carrier family 31, member 2 protein-coding 19785 NR_024198 Rprl3 RPRH4|Rmrp4 - 8 1.92 cM ribonuclease P RNA-like 3 ncRNA 16551 Mm.42203 NM_010615 ENSMUSG00000012443 Kif11 Eg5|Kif8|Kifl1|Knsl1 - 19|19 C2 kinesin family member 11 protein-coding 102638675 XR_380880 Gm35182 - - 10 D2|10 predicted gene, 35182 ncRNA 66624 Mm.30043 NM_025668 ENSMUSG00000035227 Spcs2 5730406I15Rik|AA408713|mKIAA0102 - 7|7 E2 signal peptidase complex subunit 2 homolog (S. cerevisiae) protein-coding 100503884 Mm.332379 NM_001256059 ENSMUSG00000045790 Ccdc149 Gm447 - 5|5 C1 coiled-coil domain containing 149 protein-coding 53623 Mm.327681 NM_016886 ENSMUSG00000001986 Gria3 2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3 - X A4|X 23.19 cM glutamate receptor, ionotropic, AMPA3 (alpha 3) protein-coding 72611 Mm.206555 NM_028298 ENSMUSG00000007812 Zfp655 2700038I16Rik|9030409O18Rik|mKIAA4222 - 5|5 G2 zinc finger protein 655 protein-coding 109786 Upg2 Upg-2 - - urinary pepsinogen 2 protein-coding 62152 D13Mit99 - - 13 40.98 cM DNA segment, Chr 13, Massachusetts Institute of Technology 99 unknown 98396 Mm.389181 NM_173865 ENSMUSG00000013275 Slc41a1 AI573938|B230315F01Rik - 1|1 E4 solute carrier family 41, member 1 protein-coding 107487 Lus - - - lymphoid cytostasis suppressor unknown 258687 Mm.271528 NM_146692 ENSMUSG00000094986 Olfr1454 MOR202-14 - 19|19 A olfactory receptor 1454 protein-coding 666040 Mm.271555 NM_001242937 ENSMUSG00000096508 Gm7903 EG666040 - X|X F1 predicted gene 7903 protein-coding 21127 T(2;19)68H T68H - - reciprocal translocation, Chr 2 and 19, Harwell 68 other 83561 Mm.247541 NM_031387 ENSMUSG00000025081 Tdrd1 MTR-1 - 19|19 D2 tudor domain containing 1 protein-coding 109395 Fob4 - - - F-line obesity QTL 4 unknown 100526467 NR_037221 ENSMUSG00000092870 Mir3061 mir-3061|mmu-mir-3061 - 11 B1.3|11 31.86 cM microRNA 3061 ncRNA 93862 D14Jor3 - - - DNA segment, Chr 14, Barbara Jordan 3 unknown 112331 Wg4 - - - weight gain in high growth mice 4 unknown 100042678 Mm.16974 XR_001778258 Gm3960 - - 7 F1|7 predicted gene 3960 unknown 16578 Mm.42170 NM_010628 ENSMUSG00000032489 Kif9 - - 9|9 F2 kinesin family member 9 protein-coding 78095 5430434F05Rik - - 6|6 C3 RIKEN cDNA 5430434F05 gene protein-coding 102638577 Gm29213 - - Y|Y predicted gene 29213 protein-coding 102640052 Gm21855 - - Y|Y predicted gene, 21855 protein-coding 72543 Mm.254914 NM_175184 ENSMUSG00000038740 Mvb12b 2610200O14Rik|2610528K11Rik|AI414895|Fam125b - 2|2 B multivesicular body subunit 12B protein-coding 50528 Mm.276145 NM_015775 ENSMUSG00000000385 Tmprss2 D16Ertd61e - 16 C4|16 57.53 cM transmembrane protease, serine 2 protein-coding 100503895 Mm.3301 NM_031187 ENSMUSG00000024173 Tpsab1 MMCP-7|Mcp-7|Mcp7|Mcpt7 - 17 A3.3|17 12.53 cM tryptase alpha/beta 1 protein-coding 16881 Mm.288179 NM_010715 ENSMUSG00000056394 Lig1 AL033288|LigI - 7 A1|7 7.82 cM ligase I, DNA, ATP-dependent protein-coding 105438 AA673491 - - - expressed sequence AA673491 unknown 100041655 Mm.483310 NR_029470 ENSMUSG00000075555 Gm10863 - - 15|15 E1 predicted gene 10863 ncRNA 102632222 Mm.138731 XR_868421 ENSMUSG00000090642 Gm17182 - - 5 C1|5 28.93 cM predicted gene 17182 ncRNA 108169027 XR_001784795 LOC108169027 - - 5 A1 uncharacterized LOC108169027 ncRNA 13484 dmpy dpy - - dumpy unknown 100503197 Mm.99352 NR_037971 ENSMUSG00000100798 Gm19589 - - 1 D|1 44.69 cM predicted gene, 19589 ncRNA 102633135 Gm31039 - - 14|14 predicted gene, 31039 pseudo 404236 Mm.297430 NM_207535 Mrgpra7 MrgA7 - - MAS-related GPR, member A7 protein-coding 100035586 Orq1 - - - ovulation rate QTL 1 unknown 105244400 XR_879921 Gm40016 - - 11 B3|11 predicted gene, 40016 ncRNA 105243960 XR_865569 Gm39666 - - 1 C4|1 predicted gene, 39666 ncRNA 105243635 LOC105243635 CH36-172J23.2|CH36-8M21.3|CH36-92G23.5|CH36-92G23.6 - - uncharacterized LOC105243635 ncRNA 17175 Mm.378962 NM_010767 ENSMUSG00000028979 Masp2 MASP-2|MAp19 - 4|4 E2 mannan-binding lectin serine peptidase 2 protein-coding 102633810 Gm31544 - - 13 D2.3|13 predicted gene, 31544 pseudo 546979 Gm6006 - - 7|7 D2 predicted gene 6006 pseudo 545519 Gm5846 EG545519 - 3|3 C U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 pseudogene pseudo 109624 Mm.308134 NM_145575 ENSMUSG00000029761 Cald1 4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik - 6 B1|6 15.07 cM caldesmon 1 protein-coding 100126194 Skts-fp1 - - - skin tumor susceptibility in FVB and PWK 1 unknown 73330 1700018P08Rik - - 8|8 RIKEN cDNA 1700018P08 gene protein-coding 114321 Yaa2 Bxs1 - 1 32.31 cM Y-linked autoimmune acceleration QTL 2 unknown 12662 Mm.257316 NM_018818 ENSMUSG00000025531 Chm Rep-1 - X|X E1 choroidermia (RAB escort protein 1) protein-coding 100034843 Tbbmd4 - - - total body bone mineral density 4 unknown 76604 Mm.437190 NR_110583 ENSMUSG00000085437 1700047A11Rik 4930554C15Rik - 8|8 A2 RIKEN cDNA 1700047A11 gene ncRNA 100416438 Gm14847 - - X|X D ribosomal protein L18A pseudogene pseudo 102632573 XR_384749 Gm30611 - - 16 B1|16 predicted gene, 30611 ncRNA 108167803 XR_001779752 Gm46219 - - 10 A4|10 predicted gene, 46219 ncRNA 78668 Mm.10626 NR_015604 ENSMUSG00000030337 E130112N10Rik 5830448L21Rik|9530059J11Rik - 6|6 F2 RIKEN cDNA E130112N10 gene ncRNA 22178 Mm.30438 NM_031202 ENSMUSG00000005994 Tyrp1 Oca3|TRP-1|TRP1|Tyrp|b|brown|isa - 4 C3|4 37.89 cM tyrosinase-related protein 1 protein-coding 62546 D11Mit198 - - 11 62.92 cM DNA segment, Chr 11, Massachusetts Institute of Technology 198 unknown 73834 Mm.311549 NM_023721 ENSMUSG00000021114 Atp6v1d 1110004P10Rik|Atp6m|VATD|Vma8 - 12 C3|12 35.51 cM ATPase, H+ transporting, lysosomal V1 subunit D protein-coding 15896 Mm.394 NM_010494 ENSMUSG00000001029 Icam2 CD102|Icam-2|Ly-60 - 11 E1|11 69.09 cM intercellular adhesion molecule 2 protein-coding 387223 NR_029532 ENSMUSG00000065604 Mir29b-1 Mirn29b|Mirn29b-1|mir-29b-1 - 6|6 A3.3 microRNA 29b-1 ncRNA 329735 Mm.270500 NM_177858 ENSMUSG00000086968 4933431E20Rik - - 3|3 F2.3 RIKEN cDNA 4933431E20 gene ncRNA 105246656 XR_878363 Gm28499 - - 1 D|1 predicted gene 28499 ncRNA 244745 Mm.38526 NM_172920 ENSMUSG00000043067 Dpy19l1 1100001I19Rik|6030402K12|AI225861|AW558481 - 9|9 A4 dpy-19-like 1 (C. elegans) protein-coding 62959 D12Mit262 - - 12 60.56 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 262 unknown 100042621 Gm10904 - - 14|14 C2 predicted gene 10904 protein-coding 102640802 XR_382338 Gm36784 - - 13 A5|13 predicted gene, 36784 ncRNA 667219 Gm12186 Pcbp2-rs - 11|11 B1.2 poly(rC) binding protein 2 pseudogene pseudo 664843 Gm7364 EG664843 - 9|9 F1 karyopherin alpha 7 (importin alpha 8) pseudogene pseudo 53681 DYByu6 D0Byu6 - - DNA segment, Chr Y, Brigham Young University 6 unknown 102634426 XR_383899 Gm32011 - - 15 B2|15 predicted gene, 32011 ncRNA 110834 Mm.63569 NM_145129 ENSMUSG00000032303 Chrna3 (a)3|A730007P14Rik|Acra-3|Acra3 - 9|9 B cholinergic receptor, nicotinic, alpha polypeptide 3 protein-coding 230757 Mm.296838 NM_001013755 ENSMUSG00000073755 5730409E04Rik 7530403E16Rik|AI849033 - 4|4 D2.2 RIKEN cDNA 5730409E04Rik gene protein-coding 67925 Mm.392402 1700066D14Rik - - 10|10 RIKEN cDNA 1700066D14 gene protein-coding 70875 Mm.444624 4921513I08Rik - - 7|7 RIKEN cDNA 4921513I08 gene protein-coding 777679 Ighd2-3 Gm16784 - 12|12 F1 immunoglobulin heavy diversity 2-3 other 61849 D1Mit401 - - 1 73.56 cM DNA segment, Chr 1, Massachusetts Institute of Technology 401 unknown 231915 Mm.29402 NM_001013378 ENSMUSG00000041264 Uspl1 E430026A01Rik - 5|5 G3 ubiquitin specific peptidase like 1 protein-coding 102633056 Gm30973 - - 11|11 predicted gene, 30973 ncRNA 102633524 XR_386562 Gm31331 - - 19 A|19 predicted gene, 31331 ncRNA 228033 Mm.2966 NM_175015 ENSMUSG00000018770 Atp5g3 6030447M23 - 2|2 C3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) protein-coding 231042 Mm.45513 NM_153092 ENSMUSG00000048439 Nupl2 AV116043|CG1|NLP-1|Nlp1 - 5|5 A3 nucleoporin like 2 protein-coding 109424 Hpi1 - - 13 7.73 cM hapatic PMN infiltration 1 unknown 257704 GA_x5J8B7TU1B9-1178-1387 - - - olfactory receptor GA_x5J8B7TU1B9-1178-1387 protein-coding 102632986 XR_868658 Gm16035 - - 5 G2|5 79.94 cM predicted gene 16035 ncRNA 102636446 XR_385672 Gm33509 - - 17 D|17 predicted gene, 33509 ncRNA 102632697 XR_386306 Gm30700 - - 18 E2|18 predicted gene, 30700 ncRNA 631304 Mm.328950 NM_001101588 ENSMUSG00000090700 Cyp4f40 EG631304 - 17|17 B1 cytochrome P450, family 4, subfamily f, polypeptide 40 protein-coding 100417971 Gm18925 - - 8|8 D3 family with sequence similarity 54, member A pseudogene pseudo 102637632 XR_875534 Gm34394 - - 15 E2|15 predicted gene, 34394 ncRNA 27761 D2Abb3e - - 2 77.54 cM DNA segment, Chr 2, Abbott 3 expressed unknown 105246607 Gm16277 - - 19|19 54.16 cM predicted gene 16277 ncRNA 107508 Mm.154511 NM_029735 ENSMUSG00000026615 Eprs 2410081F06Rik|3010002K18Rik|C79379|Qprs - 1|1 H5 glutamyl-prolyl-tRNA synthetase protein-coding 404373 Olfr280-ps1 EG257751|GA_x5J8B7W76D0-7895713-7896429 - 15|15 F1 olfactory receptor 280, pseudogene 1 pseudo 102636410 XR_381437 Gm33484 - - 12 A3|12 predicted gene, 33484 ncRNA 107568 Mm.78312 NM_177327 ENSMUSG00000041058 Wwp1 8030445B08Rik|AIP5|SDRP1|Tiul1 - 4|4 A3 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 19158 Mm.272130 NM_011181 ENSMUSG00000003269 Cyth2 ARNO|CLM2|Pscd2 - 7|7 B3 cytohesin 2 protein-coding 19565 Rb(5.14)21Lub Rb21Lub - - Robertsonian translocation, Chr 5 and 14, Lubeck 21 other 100503851 Gm14674 - - X A7.1|X 34.69 cM histone H2A, embryonic-like pseudo 75329 Mm.108729 NM_029253 ENSMUSG00000039200 Atf7ip2 4930558K11Rik|BC018510|Get-1|PSM2 - 16|16 A1 activating transcription factor 7 interacting protein 2 protein-coding 100039573 Gm2318 - - X A3.3|X predicted gene 2318 pseudo 97448 C78109 - - - expressed sequence C78109 unknown 110120419 LOC110120419 - - - VISTA enhancer mm1042 biological-region 258783 Mm.131149 NM_146787 ENSMUSG00000061039 Olfr920 MOR165-6 - 9|9 A5.1 olfactory receptor 920 protein-coding 15550 Mm.4716 NM_008308 ENSMUSG00000021721 Htr1a Gpcr18 - 13 D1|13 56.92 cM 5-hydroxytryptamine (serotonin) receptor 1A protein-coding 100036017 Vmmt8 - - - vertebral morphology and mechanical traits 8 unknown 102634246 Gm31877 - - 10|10 predicted gene, 31877 ncRNA 101055782 Mm.488457 XR_374557 Gm13583 - - 2|2 C1.2 predicted gene 13583 ncRNA 102634986 XR_390551 Gm32435 - - 4 B1|4 predicted gene, 32435 ncRNA 72236 Mm.386810 NM_024445 ENSMUSG00000031893 Tsnaxip1 1700016K08Rik|TXI1 - 8|8 D3 translin-associated factor X (Tsnax) interacting protein 1 protein-coding 414077 Mm.35790 NM_001001493 ENSMUSG00000059355 Wdr83os - - 8|8 C3 WD repeat domain 83 opposite strand protein-coding 232975 Mm.44101 NM_144921 ENSMUSG00000040907 Atp1a3 Atpa-2 - 7 A3|7 13.73 cM ATPase, Na+/K+ transporting, alpha 3 polypeptide protein-coding 244209 Mm.108037 NM_177382 ENSMUSG00000030670 Cyp2r1 - - 7|7 F1 cytochrome P450, family 2, subfamily r, polypeptide 1 protein-coding 105244882 Gm40410 - - 6|6 predicted gene, 40410 ncRNA 97691 C77058 - - - expressed sequence C77058 protein-coding 100043318 Gm4356 - - 17 A3.3|17 guanine nucleotide binding protein (G protein), gamma 5 pseudogene pseudo 668831 Gm9387 EG668831|Gm132 - 3|3 G3 tetratricopeptide repeat domain 5 pseudogene pseudo 105246745 XR_878656 Gm41987 - - 2 H4|2 predicted gene, 41987 ncRNA 14864 Mm.440885 NM_010359 ENSMUSG00000004038 Gstm3 Fsc2|mGSTM5 - 3|3 F2.3 glutathione S-transferase, mu 3 protein-coding 102637713 Gm34453 - - 9|9 predicted gene, 34453 ncRNA 18175 Mm.386769 NM_008733 ENSMUSG00000049134 Nrap - - 19 D2|19 51.8 cM nebulin-related anchoring protein protein-coding 77822 Mm.491633 Ube4bos1 A930028C08Rik - 4|4 ubiquitination factor E4B, opposite strand 1 unknown 102639160 XR_376462 Gm35537 - - 4 C6|4 predicted gene, 35537 ncRNA 102632653 Gm30675 - - 17|17 predicted gene, 30675 ncRNA 71853 Mm.222825 NM_027959 ENSMUSG00000020571 Pdia6 1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7 - 12|12 A1.1 protein disulfide isomerase associated 6 protein-coding 100040031 Mm.463839 NM_001160143 ENSMUSG00000093950 Gm20823 - - Y|Y C3 predicted gene, 20823 protein-coding 102634856 Gm32340 - - 3 B|3 predicted gene, 32340 pseudo 107607 Mm.28498 NM_172729 ENSMUSG00000038058 Nod1 C230079P11|Card4|F830007N14Rik|Nlrc1 - 6|6 B3 nucleotide-binding oligomerization domain containing 1 protein-coding 102632263 XR_387798 Gm30389 - - 8 C1|8 predicted gene, 30389 ncRNA 637008 Gm11793 - - 11|11 E2 predicted gene 11793 pseudo 69387 Mm.278554 NM_153527 ENSMUSG00000030708 Dnajb13 1700014P03Rik|Tsarg - 7|7 E2 DnaJ heat shock protein family (Hsp40) member B13 protein-coding 19638 Rb(9.19)163H Rb163H - - Robertsonian translocation, Chr 9 and 19, Harwell 163 other 100417089 Gm18393 - - 8|8 A1.1 IKAROS family zinc finger 5 pseudogene pseudo 320466 Mm.401371 NR_110581 ENSMUSG00000087026 A230103J11Rik - - 8|8 C3 RIKEN cDNA A230103J11 gene ncRNA 435422 Gm5672 - - 14|14 E4 crystallin, zeta pseudogene pseudo 100040228 Gm2673 - - 5 E2|5 CWF19-like 1, cell cycle control pseudogene pseudo 18387 Mm.7977 NM_011011 ENSMUSG00000025905 Oprk1 K-OR-1|KOR|KOR-1|MSL-1|Oprk2|R21 - 1 A1|1 1.89 cM opioid receptor, kappa 1 protein-coding 52800 D16Jhu23e - - - DNA segment, Chr 16, Johns Hopkins University 23, expressed unknown 112051 Triglq1 - - 4 10.61 cM triglyceride QTL 1 unknown 100040260 Atf1-ps Gm1862 - X|X A5 activating transcription factor 1, pseudogene pseudo 110022 Dvb11-3 - - - V11<+> T cell deletion 3 protein-coding 100036443 Tailaq3 Tlaq3 - - tail length adjusted QTL 3 unknown 100035627 Bntq15 - - - bone traits QTL 15 unknown 100042951 Mm.436838 XR_168665 Gm4123 - - 4 D3|4 predicted gene 4123 unknown 108168042 Gm46385 - - 13 A5|13 predicted gene, 46385 pseudo 102407 AA517031 - - - expressed sequence AA517031 unknown 320855 Mm.395880 A230061C15Rik - - 10|10 A2 RIKEN cDNA A230061C15 gene protein-coding 100418374 Gm17042 - - 12|12 E serine (or cysteine) preptidase inhibitor, clade A, member 1B pseudogene pseudo 102631994 Gm30179 - - 14|14 predicted gene, 30179 ncRNA 71293 Mm.399556 NR_040644 ENSMUSG00000086355 4933428C19Rik - - 4|4 A5 RIKEN cDNA 4933428C19 gene ncRNA 100041349 Gm3283 - - 5|5 C1 DDB1 and CUL4 associated factor 12 pseudogene pseudo 102636671 XR_386128 Gm33674 - - 18 A2|18 predicted gene, 33674 ncRNA 102637967 XR_378883 Gm34647 - - 8 A4|8 predicted gene, 34647 ncRNA 66337 Mm.45187 NM_183254 ENSMUSG00000051736 Fam229b 1700025K23Rik - 10|10 B1 family with sequence similarity 229, member B protein-coding 791381 Mm.402112 NR_045874 ENSMUSG00000053049 Gm15413 - - 7 E1|7 predicted gene 15413 ncRNA 108569 Iapls2-31 - - - intracisternal A particle, lymphocyte specific 2-31 other 228807 Mm.103555 NM_199304 ENSMUSG00000059842 Zfp341 Znf341 - 2|2 H1 zinc finger protein 341 protein-coding 19942 Mm.340658 NM_011289 ENSMUSG00000063316 Rpl27 - - 11|11 D ribosomal protein L27 protein-coding 54354 Mm.248291 NM_018750 ENSMUSG00000026430 Rassf5 1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl - 1 E4|1 56.91 cM Ras association (RalGDS/AF-6) domain family member 5 protein-coding 102640404 Gm26861 - - 13|13 predicted gene, 26861 ncRNA 237694 Mm.72926 NM_172792 ENSMUSG00000078962 4932414J04Rik - - 11|11 A3.1 RIKEN cDNA 4932414J04 gene ncRNA 105247127 XR_881255 Gm42282 - - 4 B1|4 predicted gene, 42282 ncRNA 547172 Gm6025 EG547172 - X|X A5 predicted pseudogene 6025 protein-coding 68431 Mm.19973 NM_133694 ENSMUSG00000025226 Fbxl15 0710008C12Rik|Fbxo37 - 19|19 C3 F-box and leucine-rich repeat protein 15 protein-coding 320155 Mm.447252 NR_045778 ENSMUSG00000114469 C730002L08Rik - - 19|19 B RIKEN cDNA C730002L08 gene ncRNA 403202 Mm.34482 NM_207529 ENSMUSG00000067577 A430093F15Rik Gm674 - 19|19 A RIKEN cDNA A430093F15 gene ncRNA 56635 Mm.23585 NM_019991 ENSMUSG00000022886 Prl2a1 Ghd21|PLP-M|Prlpm - 13 A3.1|13 12.62 cM prolactin family 2, subfamily a, member 1 protein-coding 78410 2900083M14Rik - - 2|2 RIKEN cDNA 2900083M14 gene protein-coding 113847 Mm.431989 NM_053220 ENSMUSG00000068231 Vmn1r43 V1ra2|V1ra5 - 6|6 D1 vomeronasal 1 receptor 43 protein-coding 100040721 Gm2926 - - 7 E1|7 LSM6 homolog, U6 small nuclear RNA associated pseudogene pseudo 20788 Mm.38016 NM_033218 ENSMUSG00000022463 Srebf2 AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc - 15|15 E1 sterol regulatory element binding factor 2 protein-coding 27860 D0Nds20 - - - DNA segment, Nuffield Department of Surgery 20 unknown 110482 Tcra-V4.9 - - - T cell receptor alpha, variable 4.9 other 108167611 XR_001778821 Gm46083 - - 1 A1|1 predicted gene, 46083 ncRNA 14827 Mm.263177 NM_007952 ENSMUSG00000027248 Pdia3 58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca - 2 E5|2 60.38 cM protein disulfide isomerase associated 3 protein-coding 105243082 XR_870034 Gm39110 - - 7 F4|7 predicted gene, 39110 ncRNA 100418298 Gm19126 - - 7|7 A3 carcinoembryonic antigen-related cell adhesion molecule 1 pseudogene pseudo 76654 Mm.200370 NM_029692 ENSMUSG00000026839 Upp2 1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2 - 2|2 C1.1 uridine phosphorylase 2 protein-coding 140486 Mm.294769 NM_009951 ENSMUSG00000013415 Igf2bp1 AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063 - 11 D|11 59.08 cM insulin-like growth factor 2 mRNA binding protein 1 protein-coding 102638161 XR_382937 Gm34790 - - 13 D2.2|13 predicted gene, 34790 ncRNA 474160 Mm.206186 NR_040470 ENSMUSG00000092349 Platr17 - - 17|17 B1 pluripotency associated transcript 17 ncRNA 654498 Mm.364550 NM_001145096 ENSMUSG00000072511 Hhla1 F930104E18Rik - 15|15 D1 HERV-H LTR-associating 1 protein-coding 105246234 XR_876669 Gm41546 - - 17 A3.3|17 predicted gene, 41546 ncRNA 100302688 Mm.444135 NM_001164374 ENSMUSG00000090439 Gm17455 - - 10|10 B4 predicted gene, 17455 protein-coding 108169044 XR_001784853 Gm46912 - - 5 B3|5 predicted gene, 46912 ncRNA 100416900 Gm18310 - - 7|7 D2 high mobility group box 2 pseudogene pseudo 100416924 Gm11885 - - 4|4 A3 WEE1 homolog 2 pseudogene pseudo 102639107 XR_385030 Gm35500 - - 16 C3.3|16 predicted gene, 35500 ncRNA 442825 Mm.446713 NR_152158 ENSMUSG00000055818 A230083G16Rik - - 6|6 F2 RIKEN cDNA A230083G16 gene ncRNA 112136079 LOC112136079 - - - uncharacterized LOC112136079 pseudo 17329 Mm.766 NM_008599 ENSMUSG00000029417 Cxcl9 BB139920|CMK|Mig|MuMIG|Scyb9|crg-10 - 5 E2|5 46.51 cM chemokine (C-X-C motif) ligand 9 protein-coding 99801 AU021001 - - - expressed sequence AU021001 unknown 54615 Mm.445915 NM_018787 ENSMUSG00000023052 Npff - - 15|15 F3 neuropeptide FF-amide peptide precursor protein-coding 78306 Mm.491354 XM_003085377 Tsga10ip 1810013N20Rik|Fam161c - 19|19 A testis specific 10 interacting protein protein-coding 108167346 XR_880041 Gm45953 - - 11 B5|11 predicted gene, 45953 ncRNA 24063 Mm.330986 NM_011896 ENSMUSG00000037211 Spry1 sprouty1|spry-1 - 3|3 B sprouty RTK signaling antagonist 1 protein-coding 108168795 XR_001783482 Gm46766 - - 2 F2|2 predicted gene, 46766 ncRNA 723848 NR_029751 ENSMUSG00000065493 Mir34a Mirn34a|mir-34a|mmu-mir-34a - 4|4 E2 microRNA 34a ncRNA 105245457 Gm40907 - - 13|13 predicted gene, 40907 ncRNA 229503 Mm.296008 NM_153562 ENSMUSG00000004896 Rrnad1 - - 3|3 F1 ribosomal RNA adenine dimethylase domain containing 1 protein-coding 12479 Mm.1894 NM_007639 ENSMUSG00000028076 Cd1d1 AI747460|CD1.1|Cd1a|Cd1d|Ly-38 - 3 F1|3 37.91 cM CD1d1 antigen protein-coding 111384 Emv11 Akv-1|Emv-11 - - endogenous ecotropic MuLV 11 other 20353 Mm.29558 NM_001126047 ENSMUSG00000026121 Sema4c AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I - 1|1 B sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C protein-coding 102466236 NR_106118 ENSMUSG00000098954 Mir7658 Gm27345|mmu-mir-7658 - 4|4 E2 microRNA 7658 ncRNA 319725 A130096G17Rik - - 10|10 A4 RIKEN cDNA A130096G17 gene protein-coding 320747 Mm.213001 NM_177250 ENSMUSG00000044505 Lingo4 A530050P17Rik|LERN4|Lrrn6d - 3|3 F2.1 leucine rich repeat and Ig domain containing 4 protein-coding 108168710 XR_001783011 Gm12972 - - 4 D2.2|4 63.61 cM predicted gene 12972 ncRNA 667863 Gm8848 EG667863 - 6|6 C1 ornithine decarboxylase, structural 1 pseudogene pseudo 102640980 XR_386542 Gm36913 - - 19 A|19 predicted gene, 36913 ncRNA 100040619 Gm2869 - - 8 A2|8 zinc finger, MYM-type 5 pseudogene pseudo 105247141 XR_881352 Gm42294 - - 4 C1|4 predicted gene, 42294 ncRNA 69731 Mm.24540 NM_027189 ENSMUSG00000044709 Gemin7 2400008I04Rik|AI120175|AI461688 - 7|7 A3 gem nuclear organelle associated protein 7 protein-coding 61974 D8Mit318 - - 8 60.2 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 318 unknown 85044 D4Mit99 - - 4 5.58 cM DNA segment, Chr 4, Massachusetts Institute of Technology 99 unknown 100312471 Mm.377218 NM_001167535 ENSMUSG00000115466 Vmn1r3 Gm11778 - 4 A1|4 vomeronasal 1 receptor 3 protein-coding 26399 Mm.14487 NM_011943 ENSMUSG00000020623 Map2k6 MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3 - 11|11 E1-E2 mitogen-activated protein kinase kinase 6 protein-coding 108168714 XR_001783030 LOC108168714 - - - uncharacterized LOC108168714 ncRNA 232875 Mm.333573 NM_001017955 ENSMUSG00000070822 Zscan18 EG232875 - 7 A1|7 zinc finger and SCAN domain containing 18 protein-coding 19876 Mm.310772 NM_019413 ENSMUSG00000022883 Robo1 AW494633|AW742721|DUTT1|Gm310 - 16|16 C3.1 roundabout guidance receptor 1 protein-coding 319941 D630030B08Rik - - 5|5 RIKEN cDNA D630030B08 gene protein-coding 319176 Mm.358954 NM_175662 ENSMUSG00000068855 Hist2h2ac H2a-613b - 3|3 F2.1 histone cluster 2, H2ac protein-coding 258318 Mm.377434 NM_146321 ENSMUSG00000047960 Olfr186 MOR183-9 - 16|16 C1.3 olfactory receptor 186 protein-coding 60888 D7Mit79 - - 7 19.67 cM DNA segment, Chr 7, Massachusetts Institute of Technology 79 unknown 111538 Pmv15 Pmv-15 - - polytropic murine leukemia virus 15 other 631594 Gm7069 EG631594 - 8 C1|8 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 75795 Mm.382634 NR_045381 ENSMUSG00000097553 4930455D15Rik - - 18|18 B1 RIKEN cDNA 4930455D15 gene ncRNA 65221 Mm.27387 NM_023044 ENSMUSG00000024737 Slc15a3 Ci1|cI-1 - 19|19 A solute carrier family 15, member 3 protein-coding 67928 Mm.158178 NM_026458 ENSMUSG00000062017 Abca14 1700110B15Rik|4930539G24Rik - 7|7 F2 ATP-binding cassette, sub-family A (ABC1), member 14 protein-coding 102635084 Gm32508 - - 5|5 predicted gene, 32508 ncRNA 52006 D7Ertd59e - - 7 2.06 cM DNA segment, Chr 7, ERATO Doi 59, expressed unknown 66410 Mm.347939 NM_025547 ENSMUSG00000021519 Mterf3 2410017I18Rik|Mterfd1 - 13|13 B3 mitochondrial transcription termination factor 3 protein-coding 435676 Gm13761 - - 2|2 E1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100502593 Mm.485746 Gm19269 - - 8|8 30.11 cM predicted gene, 19269 unknown 102631924 LOC102631924 - - 14 C2 60S ribosomal protein L17 pseudogene pseudo 102634536 XR_383766 Gm32093 - - 14 E4|14 predicted gene, 32093 ncRNA 627962 NR_102685 Gm6815 EG627962 - 16|16 B3 zinc finger, BED domain containing 4 pseudogene pseudo 14380 Mm.347430 NM_019468 ENSMUSG00000089992 G6pd2 G6pdx-ps1|Gpd-2|Gpd2 - 5 C3.1|5 31.99 cM glucose-6-phosphate dehydrogenase 2 protein-coding 23917 Mm.260707 NM_011829 ENSMUSG00000003500 Impdh1 B930086D20Rik|IMPDH-I - 6|6 A3.3 inosine monophosphate dehydrogenase 1 protein-coding 74054 Mm.195732 NM_028737 ENSMUSG00000013353 4931406B18Rik 4930538L19Rik - 7|7 B3 RIKEN cDNA 4931406B18 gene protein-coding 105243673 XM_011249381 Gm39504 - - 11 E1|11 predicted gene, 39504 protein-coding 18996 Mm.246550 NM_011143 ENSMUSG00000048349 Pou4f1 Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik - 14|14 E2.3 POU domain, class 4, transcription factor 1 protein-coding 62436 D19Mit109 - - 19 4.34 cM DNA Segment, Chr 19, Massachusetts Institute of Technology 109 unknown 102638878 Mm.402026 XR_383847 4930557F08Rik - - 15|15 A1 RIKEN cDNA 4930557F08 gene ncRNA 102638416 Gm21877 - - Y|Y predicted gene, 21877 protein-coding 105246678 XR_878432 Gm41928 - - 1 E2.1|1 predicted gene, 41928 ncRNA 109761 Pol19 Pol-19 - - viral polymerase 19 protein-coding 100504375 Mm.322881 NR_040343 ENSMUSG00000084821 Gm15880 - - 7 D3|7 45.66 cM predicted gene 15880 ncRNA 269292 Gm13676 - - 2|2 D calcyclin binding protein pseudogene pseudo 258252 Mm.377395 NM_207147 ENSMUSG00000052818 Olfr813 MOR108-3 - 10|10 D3 olfactory receptor 813 protein-coding 61049 D9Mit221 - - 9 10.25 cM DNA segment, Chr 9, Massachusetts Institute of Technology 221 unknown 667409 Gm8614 EG667409 - 18|18 D3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100034770 Tshp2 QTL-TSH1.2 - - tooth shape 2 unknown 17314 Mm.440219 NM_008598 ENSMUSG00000054612 Mgmt AGT|AI267024|Agat - 7 F3|7 82.07 cM O-6-methylguanine-DNA methyltransferase protein-coding 100034886 Skmw1 - - - skeletal muscle weight 1 unknown 328092 Mm.2821 NM_029545 ENSMUSG00000020956 Dtd2 4930578F06Rik|6530401N04Rik|B830049N13Rik - 12|12 C1 D-tyrosyl-tRNA deacylase 2 protein-coding 108167985 XR_001780566 Gm46338 - - 12 A1.2|12 predicted gene, 46338 ncRNA 102636360 Mm.445900 XR_387984 LOC102636360 - - 8 D3 uncharacterized LOC102636360 ncRNA 216805 Mm.339640 NM_146018 ENSMUSG00000032633 Flcn AU014660|B430214A04Rik|Bhd|FLCL - 11|11 B1.3 folliculin protein-coding 105244132 XR_866165 Gm39799 - - 2 B|2 predicted gene, 39799 ncRNA 12934 Mm.352648 NM_009955 ENSMUSG00000022048 Dpysl2 AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2 - 14 D1|14 34.6 cM dihydropyrimidinase-like 2 protein-coding 105246286 XR_876848 Gm41590 - - 17 C|17 predicted gene, 41590 ncRNA 100418315 Gm19134 - - 12|12 C1 predicted gene, 19134 pseudo 100035769 Pbwg4 - - 9 71.49 cM postnatal body weight growth 4 unknown 105244551 XR_867623 Gm40144 - - 3 G1|3 predicted gene, 40144 ncRNA 109151 Mm.100615 NM_177224 ENSMUSG00000056608 Chd9 1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308 - 8|8 C4 chromodomain helicase DNA binding protein 9 protein-coding 109610 Es25 Es-25 - - esterase 25 protein-coding 780861 Ighv1-6 - - 12|12 F2 immunoglobulin heavy variable V1-6 pseudo 100040169 Rpl35a-ps5 Gm10213 - 5|5 B1 ribosomal protein L35A, pseudogene 5 pseudo 61764 D3Mit293 - - 3 75.39 cM DNA segment, Chr 3, Massachusetts Institute of Technology 293 unknown 102637541 XR_385685 Gm34324 - - 17 E1.1|17 predicted gene, 34324 ncRNA 102638753 XR_387260 Gm35242 - - 1 D|1 predicted gene, 35242 ncRNA 61791 D2Mit424 - - 2 74.83 cM DNA segment, Chr 2, Massachusetts Institute of Technology 424 unknown 258682 Mm.377636 NM_146687 ENSMUSG00000067513 Olfr1436 MOR214-2 - 19|19 A olfactory receptor 1436 protein-coding 52343 D6Ertd490e - - 6 54.75 cM DNA segment, Chr 6, ERATO Doi 490, expressed unknown 61708 D5Mit319 - - 5 57.63 cM DNA segment, Chr 5, Massachusetts Institute of Technology 319 unknown 108206 Ppi-ps2 - - - peptidylprolyl isomerase, pseudogene 2 pseudo 492919 Pcfm2 - - 2 62.49 cM periosteal circumference and femur length 2 unknown 110491 Tcra-V3.6 - - - T cell receptor alpha, variable 3.6 other 102638630 Gm26779 - - 5|5 predicted gene, 26779 ncRNA 99887 Mm.26088 NM_178936 ENSMUSG00000028132 Tmem56 4930577M16Rik|AU018104|AW109744|C730036B01Rik - 3|3 G1 transmembrane protein 56 protein-coding 100043513 Mm.429141 NR_027637 ENSMUSG00000111952 Gm4489 Gm241 - 10 D2|10 predicted gene 4489 ncRNA 102631886 XR_388048 Gm30107 - - 8 E1|8 predicted gene, 30107 ncRNA 102635290 Mm.427859 NR_131195 Ttc39aos1 Gm12750|lincRNA-EPS - 4 C7|4 51.29 cM Ttc39a opposite strand RNA 1 ncRNA 102637261 XR_387866 Gm27246 - - 8 C3|8 predicted gene 27246 ncRNA 320456 Mm.32859 NM_177163 B330016D10Rik - - 4|4 D3 RIKEN cDNA B330016D10 gene ncRNA 666891 Gm8349 EG666891 - 3|3 E1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 65107 Mm.472719 NM_022993 ENSMUSG00000022175 Lrp10 Lrp9 - 14|14 C2 low-density lipoprotein receptor-related protein 10 protein-coding 22592 Mm.2213 NM_011729 ENSMUSG00000026048 Ercc5 Xpg - 1 C1.1|1 23.55 cM excision repair cross-complementing rodent repair deficiency, complementation group 5 protein-coding 102638551 XR_384208 Gm35087 - - 15 D3|15 predicted gene, 35087 ncRNA 219024 Mm.239117 NM_001033271 ENSMUSG00000035953 Tmem55b BC039161|Pip4p1 - 14|14 C1 transmembrane protein 55b protein-coding 100503548 Gm19763 - - X|X 43.9 cM predicted gene, 19763 ncRNA 102639110 XR_380026 Gm35501 - - 9 F4|9 predicted gene, 35501 ncRNA 75801 Mm.242892 NM_029444 ENSMUSG00000021098 4930447C04Rik 4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1 - 12|12 C3 RIKEN cDNA 4930447C04 gene protein-coding 97124 Mm.245976 C76213 - - - expressed sequence C76213 unknown 338375 Mm.114424 NM_177397 ENSMUSG00000026394 Atp6v1g3 - - 1|1 E4 ATPase, H+ transporting, lysosomal V1 subunit G3 protein-coding 735258 NR_030470 ENSMUSG00000076014 Mir669a-2 Mirn669a-2 - 2 A1|2 microRNA 669a-2 ncRNA 61267 D2Mit208 - - 2 66.44 cM DNA segment, Chr 2, Massachusetts Institute of Technology 208 unknown 18787 Mm.250422 NM_008871 ENSMUSG00000037411 Serpine1 PAI-1|PAI1|Planh1 - 5|5 G2 serine (or cysteine) peptidase inhibitor, clade E, member 1 protein-coding 331003 Mm.50805 NR_040770 ENSMUSG00000101734 4933400C23Rik 4933400C23 - 9|9 E3.3 RIKEN cDNA 4933400C23 gene ncRNA 116975 Elmaz1 - - 5 48.5 cM elevated maze behavior 1 unknown 100035896 Bomd6 - - 4 74.75 cM bone mineral density 6 unknown 225341 Mm.24551 NM_144862 ENSMUSG00000024395 Lims2 PINCH2 - 18|18 B1 LIM and senescent cell antigen like domains 2 protein-coding 331045 Mm.156678 A530083I20Rik - - 9|9 F4 RIKEN cDNA A530083I20 gene ncRNA 96925 C86447 - - - expressed sequence C86447 protein-coding 20907 Mm.6225 NM_016801 ENSMUSG00000007207 Stx1a HPC-1 - 5|5 G2 syntaxin 1A (brain) protein-coding 93932 D16Jhu71 410O15.T7 - - DNA segment, Chr 16, Johns Hopkins University 71 unknown 97011 C81302 - - - expressed sequence C81302 unknown 328388 Mm.219425 NM_183210 Gm10101 A630019B22 - 14 B|14 predicted gene 10101 unknown 21961 Mm.309975 NM_027884 ENSMUSG00000055322 Tns1 1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns - 1 C3|1 38.17 cM tensin 1 protein-coding 61616 D9Mit205 - - 9 20.75 cM DNA segment, Chr 9, Massachusetts Institute of Technology 205 unknown 231125 Mm.113388 NM_001015039 ENSMUSG00000037224 Zfyve28 9630058O20Rik|Gm146|mKIAA1643 - 5|5 B2 zinc finger, FYVE domain containing 28 protein-coding 100039917 Gm13022 - - 4|4 D2.3 predicted gene 13022 pseudo 71181 4933411E06Rik - - 1|1 RIKEN cDNA 4933411E06 gene protein-coding 100043560 Gm4518 - - 17 E1.1|17 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100036151 Pnhdlc2 - - - plasma non-HDL cholesterol 2 unknown 105247577 LOC105247577 - - - uncharacterized LOC105247577 ncRNA 100417350 Gm18551 - - 12|12 F1 RAD23b homolog pseudogene pseudo 75253 Mm.401984 NR_040739 ENSMUSG00000099724 4930554C24Rik - - 9|9 E3.1 RIKEN cDNA 4930554C24 gene ncRNA 108168320 Gm46577 - - 17 C|17 nuclear transport factor 2 pseudogene pseudo 111405 Emv42 Emv-42 - - endogenous ecotropic MuLV 42 other 630612 Gm17352 - - 13|13 B3 ribosomal protein S18 pseudogene pseudo 234214 Mm.211096 NM_172752 ENSMUSG00000031626 Sorbs2 2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2 - 8|8 B1.1 sorbin and SH3 domain containing 2 protein-coding 109400 Spm1 - - 4 45.66 cM splenomegaly modifier unknown 108167362 XM_017315286 Gm45961 - - 12 A1.2|12 predicted gene, 45961 protein-coding 102639762 Mm.242373 XR_384212 ENSMUSG00000116284 LOC102639762 - - 15 D3 thymosin beta-10 ncRNA 76303 Mm.291279 NM_001033174 ENSMUSG00000024687 Osbp 1110018F06Rik|AW559088|mKIAA4220 - 19 A|19 8.58 cM oxysterol binding protein protein-coding 258614 Mm.271467 NM_146621 ENSMUSG00000054498 Olfr308 MOR104-1 - 7|7 D3 olfactory receptor 308 protein-coding 670911 Gm9509 - - 15|15 B3.1 Ras-GTPase-activating protein SH3-domain binding protein 1 pseudogene pseudo 102636957 XR_373432 Gm28411 - - 1 C2|1 predicted gene 28411 ncRNA 117112 D12Pgn2 - - - DNA segment, Chr 12, Paigen 2 unknown 108168693 XR_001782970 LOC108168693 - - 4 B3 uncharacterized LOC108168693 ncRNA 100504144 Gm13421 - - 2|2 19.38 cM predicted gene 13421 ncRNA 105244227 Mm.396222 XR_866527 Gm39874 - - 2 E1|2 predicted gene, 39874 ncRNA 73296 Mm.276200 NM_028493 ENSMUSG00000021589 Rhobtb3 1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878 - 13|13 C1 Rho-related BTB domain containing 3 protein-coding 56386 Mm.393827 NM_019737 ENSMUSG00000056124 B4galt6 AA536803|AU022389 - 18|18 A2 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6 protein-coding 425051 Mm.467105 XR_865365 D930019O06Rik - - 1 B|1 RIKEN cDNA D930019O06 ncRNA 319487 Mm.137341 NR_040374 ENSMUSG00000096960 A230028O05Rik - - 16|16 B1 RIKEN cDNA A230028O05 gene ncRNA 100417396 Gm18589 - - 3|3 H4 leucine rich repeat containing 4 pseudogene pseudo 102633441 XR_386411 Gm31265 - - 18 E3|18 predicted gene, 31265 ncRNA 105651 Mm.297365 NM_001167908 ENSMUSG00000072494 Ppp1r3e A630071A11Rik|AW049239|Gm1211 - 14|14 C2 protein phosphatase 1, regulatory (inhibitor) subunit 3E protein-coding 102637693 XR_381806 Gm26512 - - 12 D3|12 predicted gene, 26512 ncRNA 62366 D14Mit253 - - 14 14.55 cM DNA Segment, Chr 14 Massachusetts Institute of Technology 253 unknown 60748 D1Mit91 - - 1 54.7 cM DNA segment, Chr 1, Massachusetts Institute of Technology 91 unknown 112093 Bglq8 - - 11 5.78 cM body growth late QTL 8 unknown 50498 Mm.256798 NM_015766 ENSMUSG00000003206 Ebi3 EBI-3|IL-27 - 17 D|17 29.08 cM Epstein-Barr virus induced gene 3 protein-coding 74194 Mm.46497 NM_028810 ENSMUSG00000017144 Rnd3 2610017M01Rik|AI661404|Arhe|Rhoe - 2|2 C1.1 Rho family GTPase 3 protein-coding 11668 Mm.250866 NM_013467 ENSMUSG00000053279 Aldh1a1 ALDH-E1|ALHDII|Ahd-2|Ahd2|Aldh1|Aldh1a2|E1|Raldh1 - 19 B|19 13.91 cM aldehyde dehydrogenase family 1, subfamily A1 protein-coding 98134 C76533 - - - expressed sequence C76533 unknown 258905 Mm.103798 NM_146903 ENSMUSG00000061457 Olfr871 MOR141-2 - 9|9 A3 olfactory receptor 871 protein-coding 102635141 XR_001784778 Gm32554 Gm43643 - 5 A1|5 predicted gene, 32554 ncRNA 16187 Mm.983 NM_010556 ENSMUSG00000018914 Il3 BPA|Csfmu|HCGF|Il-3|MCGF|PSF - 11 B1.3|11 32.13 cM interleukin 3 protein-coding 11739 Mm.16228 NM_007450 ENSMUSG00000031633 Slc25a4 AU019225|Ant1|mANC1 - 8 B1.1|8 26.22 cM solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 protein-coding 12702 Mm.3468 NM_007707 ENSMUSG00000053113 Socs3 Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3 - 11|11 E2 suppressor of cytokine signaling 3 protein-coding 112389 Eae10 - - 3 67.53 cM experimental allergic encephalomyelitis susceptibility 10 unknown 102637866 Mm.491718 XR_390703 Gm34568 - - 4 C4|4 predicted gene, 34568 ncRNA 100040248 Mm.340791 NM_001126320 ENSMUSG00000069718 Gm11563 2310045F10Rik - 11|11 D predicted gene 11563 protein-coding 668395 Mm.426199 Ighv5-12 Gm16592 - 12|12 F1 immunoglobulin heavy variable 5-12 other 102639283 Gm13584 - - 2|2 24.33 cM predicted gene 13584 ncRNA 100418081 LOC100418081 - - 7|7 D3 transformation related protein 63 regulated like pseudogene pseudo 408079 D6Wum31 - - - DNA segment, Chr 6, Washington University School of Medicine 31 unknown 61158 D12Mit49 - - 12 7.16 cM DNA segment, Chr 12, Massachusetts Institute of Technology 49 unknown 114235 Eae23 - - 11 36.32 cM experimental allergic encephalomyelitis susceptibility 23 unknown 100041561 Gm13142 100041461|Gm3353 - 4|4 E1 protein phosphatase 2, regulatory subunit B (B56), alpha isoform pseudogene pseudo 105242656 Mm.389749 XR_869087 Gm38811 Gm44191 - 6 B3|6 predicted gene, 38811 ncRNA 100035261 Ltxs2 - - 11 39.0 cM lethal factor toxin susceptibility 2 unknown 100416248 Gm18002 - - 8|8 C5 ribosomal protein S2 pseudogene pseudo 102634781 XR_380123 Gm32283 - - 10 A2|10 predicted gene, 32283 ncRNA 404577 AL035025 - - - expressed sequence AL035025 unknown 102632967 XR_386181 Gm30909 - - 18 B3|18 predicted gene, 30909 ncRNA 105246467 XR_877481 Gm26972 - - 18 E1|18 predicted gene, 26972 ncRNA 105244415 XR_879935 Gm40026 - - 11 B3|11 predicted gene, 40026 ncRNA 77905 Mm.99811 NM_183127 ENSMUSG00000053593 Fate1 9230118O15Rik - X|X A7.3 fetal and adult testis expressed 1 pseudo 73982 4930448E06Rik - - 8|8 RIKEN cDNA 4930448E06 gene protein-coding 102633179 Gm15737 - - 6|6 41.69 cM predicted gene 15737 ncRNA 100034951 Thyct1 - - X 35.53 cM thymocyte count 1 unknown 100040054 Gm20824 - - Y|Y predicted gene, 20824 protein-coding 97611 C81461 - - - expressed sequence C81461 unknown 110957 Mm.108054 NM_033077 ENSMUSG00000039224 D1Pas1 Pl10 - 1 H5|1 90.09 cM DNA segment, Chr 1, Pasteur Institute 1 protein-coding 404362 Olfr1304-ps1 GA_x5J8B7W4T2P-416420-416268|Olfr249-ps1 - 2|2 E3 olfactory receptor 1304, pseudogene 1 pseudo 667684 Gm8761 EG667684 - X|X B ring finger protein 41 pseudogene pseudo 100312483 Vmn1r-ps45 - - 7|7 A1 vomeronasal 1 receptor, pseudogene 45 pseudo 226922 Mm.336519 NM_023872 ENSMUSG00000028033 Kcnq5 7730402H11|9230107O05Rik|AA589396|D1Mgi1 - 1|1 A4 potassium voltage-gated channel, subfamily Q, member 5 protein-coding 545253 Mm.244585 NM_001033789 ENSMUSG00000036452 Gm5820 EG545253 - 18 B3|18 predicted gene 5820 protein-coding 257938 Mm.377309 NM_001011775 ENSMUSG00000067545 Olfr1419 MOR266-10 - 19|19 A olfactory receptor 1419 protein-coding 102633548 LOC102633548 - - - sp110 nuclear body protein-like pseudo 102633860 XR_374225 Gm31585 - - 2 B|2 predicted gene, 31585 ncRNA 102637483 LOC102637483 - - 14 D2 PCNA-associated factor pseudogene pseudo 243510 Mm.436553 NM_001081266 ENSMUSG00000107499 Ccdc142 A230058J24Rik - 6|6 C3 coiled-coil domain containing 142 protein-coding 102636377 XR_390366 Gm33462 - - 4 A1|4 predicted gene, 33462 ncRNA 97349 C76751 - - - expressed sequence C76751 unknown 13529 Mm.291450 NM_010088 ENSMUSG00000018259 Prl8a2 D/tPRP|DPRP|Dtprp|Ghd11|mdPRP - 13 A3.1|13 12.41 cM prolactin family 8, subfamily a, member 2 protein-coding 17925 Mm.33779 NM_015742 ENSMUSG00000004677 Myo9b - - 8 B3.3|8 34.43 cM myosin IXb protein-coding 100316806 NR_035426 ENSMUSG00000080653 Mir669e Mirn669e|mmu-mir-669e - 2 A1|2 8.22 cM microRNA 669e ncRNA 102637069 XR_373775 Gm33973 - - 1 H5|1 predicted gene, 33973 ncRNA 13823 Mm.131135 NM_013813 ENSMUSG00000024044 Epb41l3 4.1B|DAL1P|Dal1|Epb4.1l3|NBL3 - 17 E1.3|17 40.15 cM erythrocyte membrane protein band 4.1 like 3 protein-coding 327956 Mm.244514 NM_001013607 ENSMUSG00000020830 Vmo1 Gm741 - 11|11 B3 vitelline membrane outer layer 1 homolog (chicken) protein-coding 320691 C230088H06Rik - - - RIKEN cDNA C230088H06 gene protein-coding 30933 Mm.200695 NM_152800 ENSMUSG00000009563 Tor2a Prosalusin - 2|2 B torsin family 2, member A protein-coding 102637007 XR_381445 Gm33922 - - 12 A3|12 predicted gene, 33922 ncRNA 632066 Zfp148-ps1 BERF-PS1|Gm7080 - 8 A4|8 23.89 cM zinc finger protein 148, pseudogene 1 pseudo 100418265 Gm19108 - - 13|13 D1 microtubule-associated protein, RP/EB family, member 1 pseudogene pseudo 216871 Mm.22551 NM_146020 ENSMUSG00000046811 Gltpd2 C730027E14Rik - 11|11 B3 glycolipid transfer protein domain containing 2 protein-coding 633736 Gm7123 EG633736 - X|X F2 ribosomal protein L38 pseudogene pseudo 667947 XR_001780122 Gm12247 - - 11|11 B1.3 predicted gene 12247 unknown 100042533 XR_865548 Gm11578 - - 1|1 C2 predicted gene 11578 pseudo 74756 Mm.291322 5830408B19Rik - - 10|10 RIKEN cDNA 5830408B19 gene protein-coding 13230 Mm.477846 Defa11 Defcr11 - 8|8 defensin, alpha, 11 protein-coding 77812 A930014D08Rik - - - RIKEN cDNA A930014D08 gene protein-coding 62377 D13Mit114 - - 13 5.12 cM DNA segment, Chr 13, Massachusetts Institute of Technology 114 unknown 100043906 Gm10184 - - 17|17 E5 karyopherin (importin) alpha 2 pseudogene pseudo 100302567 NR_028129 AF357399 MBI-142 - 7|7 A3 snoRNA AF357399 snoRNA 105244564 Gm40157 - - 3|3 predicted gene, 40157 ncRNA 102632683 XR_875386 Gm30691 - - 15 D1|15 predicted gene, 30691 ncRNA 102631681 XR_388737 Gm29958 - - 11 B3|11 predicted gene, 29958 protein-coding 74766 Mm.475712 NM_138303 ENSMUSG00000032182 Yipf2 1300010K09Rik - 9|9 A3 Yip1 domain family, member 2 protein-coding 492895 Egrd2 - - 15 16.74 cM early growth rate, direct effect 2 unknown 100418325 Gm12010 - - 11|11 A2 predicted gene 12010 pseudo 108168629 XM_017318838 LOC108168629 - - Y D Y-linked testis-specific protein 1-like protein-coding 100034962 Brmth8 - - - behavioral response to methamphetamines 8 unknown 215999 Mm.296470 NM_001033259 ENSMUSG00000009647 Mcu 2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64 - 10|10 B4 mitochondrial calcium uniporter protein-coding 21228 T(6;10)18Ad T18Ad - - reciprocal translocation, Chr 6 and 10, Adler 18 other 69809 Mm.75315 NM_027217 ENSMUSG00000036027 1810046K07Rik - - 9|9 A5.3 RIKEN cDNA 1810046K07 gene protein-coding 100042004 Gm3619 - - 10|10 C2 predicted gene 3619 pseudo 105247232 Gm42366 - - 4|4 predicted gene, 42366 protein-coding 108360 Emv61 Emv-61 - - endogenous ecotropic MuLV 61 other 102640188 XR_386277 Gm36316 - - 18 E1|18 predicted gene, 36316 ncRNA 109052 Mm.106868 NM_133357 ENSMUSG00000022986 Krt75 4732468K03Rik|AA589387|K6hf|Krt2-6hf|Krtcap1 - 15 F2|15 56.91 cM keratin 75 protein-coding 21117 T(2;14)1Gso T1Gso - - reciprocal translocation, Chr 2 and 14, Generoso 1 other 17122 Mm.259260 NM_010753 ENSMUSG00000037235 Mxd4 2810410A03Rik|Mad4|bHLHc12 - 5 B2|5 17.84 cM Max dimerization protein 4 protein-coding 213211 Mm.392032 NM_153762 ENSMUSG00000053128 Rnf26 8030450I18Rik - 9|9 A5.1 ring finger protein 26 protein-coding 75434 Mm.332291 NM_029285 ENSMUSG00000029182 1700001C02Rik 1700047H18Rik - 5|5 B1 RIKEN cDNA 1700001C02 gene protein-coding 258716 Mm.377651 NM_146721 ENSMUSG00000051528 Olfr424 MOR105-2 - 1|1 H3 olfactory receptor 424 protein-coding 111893 Iap5rc2 - - - intracisternal A-type particle, U5 region, SINE repeat c-2 other 330324 Mm.113703 NR_046179 ENSMUSG00000108228 6430584L05Rik 6430584L05 - 6|6 B3 RIKEN cDNA 6430584L05 gene ncRNA 102466764 NR_105883 ENSMUSG00000098296 Mir6918 Gm27968|mmu-mir-6918 - 11|11 A1 microRNA 6918 ncRNA 102642476 LOC102642476 - - - tRNA modification GTPase GTPBP3, mitochondrial protein-coding 432779 Mm.324679 NM_001033042 ENSMUSG00000021579 Lrrc14b AI595366 - 13|13 C1 leucine rich repeat containing 14B protein-coding 105247187 XR_881498 Gm42329 - - 4 D3|4 predicted gene, 42329 ncRNA 108168259 XR_001781742 LOC108168259 - - 15 D3 uncharacterized LOC108168259 ncRNA 84112 Mm.125110 NM_032400 ENSMUSG00000027762 Sucnr1 Gpr91 - 3|3 D succinate receptor 1 protein-coding 72070 Mm.396359 2010313P22Rik - - 11|11 RIKEN cDNA 2010313P22 gene protein-coding 100040172 Gm13667 - - 2|2 C3 predicted gene 13667 protein-coding 53305 235M8.T7 - - - DNA segment, 235M8.T7 (Roswell Park) unknown 668648 Gm9284 EG668648 - 17|17 D general transcription factor III A pseudogene pseudo 104173 Cypr3 - - 5 47.77 cM cytokine production 3 protein-coding 75502 Mm.232593 NM_028524 ENSMUSG00000035785 Cmtm2b 1700013O04Rik|Cklfsf22|Cklfsf2b - 8|8 D3 CKLF-like MARVEL transmembrane domain containing 2B protein-coding 67733 Mm.257094 NM_026348 ENSMUSG00000028549 Itgb3bp 4930471O16Rik|AU022583 - 4|4 C6 integrin beta 3 binding protein (beta3-endonexin) protein-coding 102641783 Mm.213804 Gm38575 - - 10|10 predicted gene, 38575 ncRNA 100416879 Gm9356 EG668781 - 12|12 A2 SCAN domain containing 3 pseudogene pseudo 320977 Mm.99905 NR_015566 ENSMUSG00000096929 A330023F24Rik C030002C11Rik - 1|1 H6 RIKEN cDNA A330023F24 gene ncRNA 53107 EC192RR - - - DNA segment, EC192RR unknown 111645 Ms16 MMS16 - - minisatellites detected by probe MMS16 other 212647 Mm.273571 NM_175438 ENSMUSG00000028737 Aldh4a1 A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1 - 4 D3|4 70.79 cM aldehyde dehydrogenase 4 family, member A1 protein-coding 105247436 LOC105247436 - - - uncharacterized LOC105247436 ncRNA 61025 D7Mit143 - - 7 7.27 cM DNA segment, Chr 7, Massachusetts Institute of Technology 143 unknown 100503203 Gm19592 - - 9|9 43.65 cM predicted gene, 19592 ncRNA 108167319 XR_001778588 LOC108167319 - - 8 C1 uncharacterized LOC108167319 ncRNA 100993 Mm.381453 NR_045702 ENSMUSG00000087516 AW549542 - - 5 F|5 expressed sequence AW549542 ncRNA 545650 Mm.473677 NM_001098840 ENSMUSG00000100234 Gm13277 - - 4 C4|4 predicted gene 13277 protein-coding 102632671 Gm30686 - - Y|Y predicted gene, 30686 ncRNA 347710 Mm.271697 NM_178248 ENSMUSG00000073724 Pramel4 C79430|D4Ertd792e - 4 E1|4 77.98 cM preferentially expressed antigen in melanoma like 4 protein-coding 105244706 Gm40265 - - 5|5 predicted gene, 40265 ncRNA 387153 NR_029549 ENSMUSG00000065407 Mir135a-1 Mir135a01|Mirn135|Mirn135a-1|mir-135a-1 - 9|9 F1 microRNA 135a-1 ncRNA 723871 NR_030151 ENSMUSG00000106253 Mir468 Mirn468|mir-468|mmu-mir-468 - 6|6 C3 microRNA 468 ncRNA 66689 Mm.248678 NM_025707 ENSMUSG00000020948 Klhl28 2810440N09Rik|4122402F11Rik|4931401E10Rik|Btbd5 - 12|12 C1 kelch-like 28 protein-coding 210417 Mm.380518 NM_172485 ENSMUSG00000042581 Thsd7b 1700074E13Rik|B930082A18|D130067I03Rik - 1|1 E4 thrombospondin, type I, domain containing 7B protein-coding 61883 D1Mit320 - - 1 18.64 cM DNA segment, Chr 1, Massachusetts Institute of Technology 320 unknown 72649 Mm.45418 NM_178625 ENSMUSG00000029782 Tmem209 2700094F01Rik|AI428435 - 6|6 A3.3 transmembrane protein 209 protein-coding 215090 Mm.472762 NM_001007573 ENSMUSG00000042763 Maneal Gm50 - 4|4 D2.2 mannosidase, endo-alpha-like protein-coding 72179 Mm.386808 NM_178624 ENSMUSG00000032507 Fbxl2 2810423A21Rik|Fbl3 - 9|9 F3 F-box and leucine-rich repeat protein 2 protein-coding 319742 Mm.49611 NM_176993 ENSMUSG00000070305 Mpzl3 5430427F17Rik|A530065I17Rik|rc|ruf - 9 A5.2|9 24.84 cM myelin protein zero-like 3 protein-coding 81012 Mm.160377 NM_030737 ENSMUSG00000062483 Vmn1r171 V1rd7|V3R7 - 7|7 A3 vomeronasal 1 receptor 171 protein-coding 100042836 Gm4057 - - 13|13 C1 predicted gene 4057 pseudo 105243228 XR_878959 Gm39206 - - 8 C1|8 predicted gene, 39206 ncRNA 93699 Mm.247203 NM_033574 ENSMUSG00000103037 Pcdhgb1 - - 18|18 B3 protocadherin gamma subfamily B, 1 protein-coding 102466784 NR_105971 ENSMUSG00000105496 Mir7004 mmu-mir-7004 - 2|2 H3 microRNA 7004 ncRNA 75053 Mm.72638 NR_131921 ENSMUSG00000086504 Kif16bos 4930511F01Rik - 2|2 G1 kinesin family member 16B, opposite strand ncRNA 320242 Mm.215371 9430081I23Rik - - 13|13 RIKEN cDNA 9430081I23 gene protein-coding 258099 Olfr1149-ps1 MOR264-14P - 2|2 D olfactory receptor 1149, pseudogene 1 pseudo 434172 Mm.247214 NM_001033782 ENSMUSG00000072259 Gm5592 EG434172 - 7 B3|7 predicted gene 5592 protein-coding 100417372 Gm18571 - - 14|14 A1 ubiquitin specific peptidase 7 pseudogene pseudo 27954 D6Uwa4 - - - DNA segment, Chr 6, University of Western Australia 4 unknown 100043768 Gm14049 - - 2|2 F1 high mobility group box 1 pseudogene pseudo 668567 Gm12331 - - 11|11 B4 high mobility group box 2 pseudogene pseudo 229672 Mm.297245 NM_001142959 ENSMUSG00000044165 Bcl2l15 Bfk|Gm566 - 3|3 F2.2 BCLl2-like 15 protein-coding 677861 Igkv12-42 - - 6|6 C1 immunoglobulin kappa chain variable 12-42 pseudo 68490 Mm.76400 NM_026741 ENSMUSG00000051550 Zfp579 1110003A17Rik|Znf579 - 7|7 A1 zinc finger protein 579 protein-coding 102638272 XR_383475 Gm34874 - - 14 D1|14 predicted gene, 34874 ncRNA 102636406 XR_374814 ENSMUSG00000087069 LOC102636406 - - 2 E1 uncharacterized LOC102636406 ncRNA 59005 Mm.38746 NM_021502 ENSMUSG00000015013 Trappc2l 1810017G16Rik|AB030200|Hspc176|Tca17 - 8|8 E1 trafficking protein particle complex 2-like protein-coding 111162617 P63lre - - - C40 intronic enhancer of tumor protein p63 gene biological-region 384450 Gm5312 EG384450 - 6|6 C3 ribosomal protein L18 pseudogene pseudo 257929 Mm.377305 NM_001011767 ENSMUSG00000020168 Olfr299 MOR221-2 - 7|7 D3 olfactory receptor 299 protein-coding 635093 Gm15314 - - 8|8 A2 zinc finger, MYM-type 5 pseudogene pseudo 621156 Mm.343319 NR_004438 ENSMUSG00000049233 Apoo-ps Apoo|EG621156 - 13|13 D2.1 apolipoprotein O, pseudogene pseudo 26942 Mm.295539 NM_012031 ENSMUSG00000037617 Spag1 tpis - 15|15 B3.1 sperm associated antigen 1 protein-coding 108168186 XM_017316334 ENSMUSG00000091700 LOC108168186 - - 14 A1 uncharacterized LOC108168186 protein-coding 319693 Mm.210155 9130221J17Rik - - 10|10 RIKEN cDNA 9130221J17 gene protein-coding 16331 Mm.15105 NM_010566 ENSMUSG00000026288 Inpp5d SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP - 1 D|1 44.44 cM inositol polyphosphate-5-phosphatase D protein-coding 102640439 XR_873219 Gm36500 - - 13 A3.3|13 predicted gene, 36500 ncRNA 108168893 XR_001783963 Gm46821 - - 3 G1|3 predicted gene, 46821 ncRNA 102636578 XR_001782835 Gm33605 - - X D|X predicted gene, 33605 ncRNA 626180 Gm6655 EG626180 - 6|6 A2 protein disulfide isomerase associated 6 pseudogene pseudo 100504018 XR_105484 Gm20016 - - 12 C1|12 24.7 cM predicted gene, 20016 ncRNA 16768 Mm.4528 NM_008479 ENSMUSG00000030124 Lag3 CD223|LAG-3|Ly66 - 6|6 F2 lymphocyte-activation gene 3 protein-coding 14450 Mm.4505 NM_010256 ENSMUSG00000022962 Gart Gaps|Prgs - 16 C3.3|16 53.18 cM phosphoribosylglycinamide formyltransferase protein-coding 268933 Mm.95512 NM_173741 ENSMUSG00000025737 Wdr24 BC037651 - 17|17 A3.3 WD repeat domain 24 protein-coding 54422 Mm.21390 NM_019446 ENSMUSG00000026805 Barhl1 Dres115|MBH2 - 2 A3|2 19.38 cM BarH like homeobox 1 protein-coding 105243393 XR_001779345 Gm39327 - - 9 A5.2|9 predicted gene, 39327 ncRNA 242823 Gm4960 EG242823 - 5|5 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102635451 Gm32784 - - 7|7 predicted gene, 32784 ncRNA 106504 Mm.439986 NM_134115 ENSMUSG00000024006 Stk38 5830476G13Rik|9530097A09Rik|AA617404|Ndr1 - 17|17 A3.3 serine/threonine kinase 38 protein-coding 68464 1110004M10Rik - - 2|2 RIKEN cDNA 1110004M10 gene protein-coding 66136 Mm.486229 NM_023162 ENSMUSG00000036315 Znrd1 1110014N07Rik|Rpa12 - 17|17 B1 zinc ribbon domain containing, 1 protein-coding 383243 Mm.390990 NM_206816 ENSMUSG00000059030 Olfr128 GA_x5J8B7TWBT8-615-998|GA_x5J8B7W5KGR-591839-591418|GA_x6K02T2PSCP-2374126-2375048|MOR218-13 - 17|17 B1 olfactory receptor 128 protein-coding 26876 Mm.158750 NM_011996 ENSMUSG00000037797 Adh4 Adh2 - 3|3 G3 alcohol dehydrogenase 4 (class II), pi polypeptide protein-coding 227327 Mm.86467 NM_145222 ENSMUSG00000079445 B3gnt7 C330001H22Rik|beta-3GnT7 - 1|1 C5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 protein-coding 105245207 XR_871829 Gm40692 - - 10 C1|10 predicted gene, 40692 ncRNA 51984 D4Ggc4e - - - DNA segment, Chr 4, G. Consalez 4, expressed unknown 61067 D3Mit264 - - 3 2.15 cM DNA segment, Chr 3, Massachusetts Institute of Technology 264 unknown 244349 Mm.182776 NM_001081149 ENSMUSG00000031540 Kat6a 1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220 - 8|8 A2 K(lysine) acetyltransferase 6A protein-coding 320321 Mm.118176 NM_177134 9430077A04Rik - - 14|14 B RIKEN cDNA 9430077A04 gene unknown 408254 Mm.474857 NR_046182 ENSMUSG00000114968 A630019I02Rik - - 13|13 C3 RIKEN cDNA A630019I02 gene ncRNA 102633452 Gm38453 - - 13 A5|13 predicted gene, 38453 pseudo 108168974 XR_001784412 LOC108168974 - - 4 D2.1 uncharacterized LOC108168974 ncRNA 231591 Mm.469882 NM_001104625 ENSMUSG00000091059 Vmn2r14 EG231591 - 5|5 F vomeronasal 2, receptor 14 protein-coding 102640273 Gm36384 - - 11|11 predicted gene, 36384 ncRNA 14317 Mm.36278 NM_080845 ENSMUSG00000001155 Ftcd - - 10 C1|10 39.25 cM formiminotransferase cyclodeaminase protein-coding 114351 Skl3 - - 6 37.96 cM skeletal size (tail length) 3 unknown 19267 Mm.945 NM_011212 ENSMUSG00000041836 Ptpre PTPe|PTPepsilon|RPTPepsilon - 7 F3|7 81.27 cM protein tyrosine phosphatase, receptor type, E protein-coding 17829 Mm.16193 NM_013605 ENSMUSG00000042784 Muc1 CD227|EMA|Muc-1 - 3 F1|3 39.02 cM mucin 1, transmembrane protein-coding 100862115 XM_006542769 ENSMUSG00000095666 LOC100862115 - - - PRAME family member 8-like protein-coding 404405 Olfr546-ps1 GA_x5J8B7W5P47-694928-693967|GA_x6K02T2PBJ9-5242017-5242978 - 7|7 E3 olfactory receptor 546, pseudogene 1 pseudo 78169 Mm.387525 4930483P17Rik - - 16|16 RIKEN cDNA 4930483P17 gene protein-coding 100417905 Gm18892 - - 9|9 A5.1 leucine zipper transcription factor-like 1 pseudogene pseudo 102633654 Gm31428 - - 15|15 predicted gene, 31428 ncRNA 56412 Mm.129136 NM_019836 ENSMUSG00000036285 Noa1 2610024G14Rik|AU022345|AtNOS1|mAtNOS1 - 5|5 C3.3 nitric oxide associated 1 protein-coding 104104 Ath2 Ath-2 - 2|2 atherosclerosis 2 protein-coding 791396 Mm.482332 Gm16485 - - - predicted gene 16485 unknown 102638516 Gm23711 - - 4|4 predicted gene, 23711 ncRNA 258380 Mm.377468 NM_146382 ENSMUSG00000068259 Olfr461 MOR120-3 - 6|6 B1 olfactory receptor 461 protein-coding 116856 Bdt2 - - 3 61.32 cM bone density traits 2 unknown 102633632 XR_375470 Gm31415 - - 3 C|3 predicted gene, 31415 ncRNA 59049 Mm.27435 NM_021551 ENSMUSG00000022199 Slc22a17 1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct - 14|14 C2 solute carrier family 22 (organic cation transporter), member 17 protein-coding 625730 Gm6616 EG625730 - 14|14 C1 small nuclear ribonucleoprotein polypeptide F pseudogene pseudo 52080 D6Ertd90e - - 6 62.97 cM DNA segment, Chr 6, ERATO Doi 90, expressed unknown 23830 Mm.294315 NM_011796 ENSMUSG00000026270 Capn10 AW049679|Capn8|mKIAA1845 - 1|1 D calpain 10 protein-coding 98267 Mm.25559 NM_133810 ENSMUSG00000026094 Stk17b 3110009A03Rik|AI120141|Drak2 - 1|1 C1.1 serine/threonine kinase 17b (apoptosis-inducing) protein-coding 100036509 Fcsa5 - - 2 16.73 cM femoral cross-sectional area 5 unknown 62878 D11Mit245 - - 11 46.18 cM DNA segment, Chr 11, Massachusetts Institute of Technology 245 unknown 108168588 XM_017318792 LOC108168588 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 27549 D7Zem2 Igf2|MAR2 - - DNA segment, Chr 7, Zemel 2 unknown 243967 Mm.291240 NM_001033356 ENSMUSG00000070564 Ntn5 Gm484 - 7|7 B3 netrin 5 protein-coding 72014 Mm.38347 NM_028055 ENSMUSG00000000202 Btbd17 1500005I02Rik|Tango10a - 11|11 E2 BTB (POZ) domain containing 17 protein-coding 68968 Mm.2289 NM_026891 ENSMUSG00000027284 Cdan1 1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI - 2|2 E5 congenital dyserythropoietic anemia, type I (human) protein-coding 68043 Mm.45225 NM_026526 ENSMUSG00000021951 Eef1akmt1 2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96|N6amt2 - 14|14 C3 EEF1A alpha lysine methyltransferase 1 protein-coding 67236 Mm.287157 NM_026048 ENSMUSG00000021276 Cinp 1810047K05Rik|2810452K22Rik - 12|12 F1 cyclin-dependent kinase 2 interacting protein protein-coding 67821 Mm.60134 NM_133690 ENSMUSG00000016327 Atp1b4 1110020B02Rik - X|X A3.3 ATPase, (Na+)/K+ transporting, beta 4 polypeptide protein-coding 78689 Mm.253902 NM_030153 ENSMUSG00000021555 Naa35 A330021G12Rik|A330027C19Rik|AI158944|C030004C14Rik|Mak10 - 13|13 B2 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 110442 13.MMHAP42FLE1 ESTM58 - - DNA segment, 13.MMHAP42FLE1 protein-coding 100036160 Pbwg16 - - - postnatal body weight growth 16 unknown 258981 Olfr1268-ps1 MOR229-1 - 2|2 E1 olfactory receptor 1268, pseudogene 1 pseudo 106780816 Obox4-ps25 - - 7 A2|7 oocyte specific homeobox 4, pseudogene 25 pseudo 100042721 Obox4-ps17 Gm3989 - 7 A1|7 oocyte specific homeobox 4, pseudogene 17 pseudo 100035038 Arigg10 - - - anti-RBC IgG antibodies 10 unknown 102638900 XR_376048 Gm35351 - - 3 G1|3 predicted gene, 35351 ncRNA 13872 Mm.282335 NM_133658 ENSMUSG00000024382 Ercc3 BTF2 p89|Ercc-3|XPB - 18|18 B1 excision repair cross-complementing rodent repair deficiency, complementation group 3 protein-coding 56566 8k10T7 - - - DNA segment, 8k10T7 unknown 77410 9530027D23Rik - - 13|13 RIKEN cDNA 9530027D23 gene protein-coding 22762 Mm.39496 NM_011766 ENSMUSG00000022306 Zfpm2 B330005D23Rik|FOG-2|FOG2 - 15 B3.1|15 15.74 cM zinc finger protein, multitype 2 protein-coding 63014 D19Mit136 - - - DNA Segment, Chr 19, Massachusetts Institute of Technology 136 unknown 108168847 XR_001783640 Gm46795 - - 2 H4|2 predicted gene, 46795 ncRNA 16819 Mm.9537 NM_008491 ENSMUSG00000026822 Lcn2 24p3|AW212229|NRL|Sip24 - 2 B|2 22.09 cM lipocalin 2 protein-coding 19737 Mm.20954 NM_009063 ENSMUSG00000026678 Rgs5 1110070A02Rik - 1 H2.3|1 76.84 cM regulator of G-protein signaling 5 protein-coding 384775 Mm.489851 NR_015460 ENSMUSG00000039174 1700003H04Rik 4930538K10Rik|4933400D22Rik - 3|3 G1 RIKEN cDNA 1700003H04 gene ncRNA 20467 Mm.2137 NM_009188 ENSMUSG00000031622 Sin3b 2810430C10Rik - 8 B3.3|8 35.08 cM transcriptional regulator, SIN3B (yeast) protein-coding 668671 Gm9297 EG668671 - 14|14 E2.2 predicted gene 9297 pseudo 545763 XM_003945848 ENSMUSG00000095475 LOC545763 - - 5|5 C3.3 uncharacterized LOC545763 protein-coding 107946 Defa-rs8 CRS4C-2a|Defcr-rs8 - - defensin, alpha, related sequence 8 protein-coding 66805 Mm.45994 NM_133681 ENSMUSG00000028699 Tspan1 9030418M05Rik - 4|4 D1 tetraspanin 1 protein-coding 100038427 Mm.263163 Gm10652 - - 3 G1|3 predicted gene 10652 unknown 102637396 Gm28244 - - Y|Y predicted gene 28244 ncRNA 71671 0610009F21Rik - - 16|16 RIKEN cDNA 0610009F21 gene protein-coding 105245174 Gm40664 - - 13|13 predicted gene, 40664 ncRNA 170732 Mm.154808 NM_133202 ENSMUSG00000039079 Trhr2 TRH-R2 - 8|8 E1 thyrotropin releasing hormone receptor 2 protein-coding 100035017 Hdl34 - - 1 76.73 cM HDL level 34 unknown 102636191 Mm.411609 XR_865437 Gm15759 - - 1 C1.3|1 28.98 cM predicted gene 15759 ncRNA 74912 Mm.159366 4930471E19Rik - - 10|10 RIKEN cDNA 4930471E19 gene ncRNA 100502707 Gm14945 - - X|X 49.81 cM phosphatidylcholine:ceramide cholinephosphotransferase 1-like pseudo 105244544 XR_867610 Gm40137 - - 3 G1|3 predicted gene, 40137 ncRNA 69657 Mm.44573 XR_868728 2310047D07Rik - - 5|5 G3 RIKEN cDNA 2310047D07 gene unknown 62937 D11Mit315 - - 11 34.28 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 315 unknown 20616 Mm.281651 NM_013669 ENSMUSG00000033419 Snap91 91kDa|AP180|F1-20|mKIAA0656 - 9|9 E3.1 synaptosomal-associated protein 91 protein-coding 320943 B230213L16Rik AA589637 - 1|1 RIKEN cDNA B230213L16 gene protein-coding 72008 Mm.386807 NM_028054 ENSMUSG00000068580 Zfyve19 1500041L05Rik|ANCHR - 2|2 E5 zinc finger, FYVE domain containing 19 protein-coding 105245630 XR_873955 Gm41059 - - 13 D2.2|13 predicted gene, 41059 ncRNA 109280100 LOC109280100 Mm933 - - VISTA enhancer mm933 biological-region 242737 Mm.148643 NM_173773 ENSMUSG00000047799 Oog4 E330017M15 - 4|4 E1 oogenesin 4 protein-coding 12453 Mm.250419 NM_017367 ENSMUSG00000063015 Ccni - - 5|5 E2 cyclin I protein-coding 319642 Mm.44557 NM_176971 ENSMUSG00000043463 Rab9b 9330195C02Rik - X|X F1 RAB9B, member RAS oncogene family protein-coding 102636861 XR_376672 Gm33814 - - 4 D2.2|4 predicted gene, 33814 ncRNA 67792 Mm.379143 NM_026380 ENSMUSG00000042671 Rgs8 6530413N01Rik - 1 G3|1 65.41 cM regulator of G-protein signaling 8 protein-coding 21157 T(2;9)13Ad T13Ad - - reciprocal translocation, Chr 2 and 9, Adler 13 other 15140 Hc1 Cen1 - - heterochromatin, Chr 1 protein-coding 62789 D15Mit202 - - 15 12.67 cM DNA segment, Chr 15, Massachusetts Institute of Technology 202 unknown 624335 Gm6494 EG624335 - 10|10 B4 zinc finger CCCH type containing 11A pseudogene pseudo 21331 Mm.482744 NM_013682 T2 brachyury2 - 17 A1|17 4.92 cM brachyury 2 protein-coding 72845 2900024I21Rik - - 14|14 RIKEN cDNA 2900024I21 gene protein-coding 232984 Mm.192369 NM_146184 ENSMUSG00000059479 B3gnt8 B3galt7|B7galt7|BC025206 - 7|7 A3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 protein-coding 11434 Mm.57 NM_013455 ENSMUSG00000022622 Acr - - 15 E3|15 44.96 cM acrosin prepropeptide protein-coding 433100 Mm.380381 NM_001013793 AA388235 - - 17|17 B1 expressed sequence AA388235 ncRNA 108167398 LOC108167398 - - - Ig heavy chain V region 914-like other 13098 Mm.42101 NM_010003 ENSMUSG00000025003 Cyp2c39 CYPIIC39 - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 39 protein-coding 633979 Mm.297629 XM_006512939 ENSMUSG00000091415 Ak9 Akd1|Akd2|Gm234|Gm7127 - 10 B1-B2|10 adenylate kinase 9 protein-coding 666765 XM_006517920 ENSMUSG00000079378 Gm8279 Gm10412 - 14 A1|14 predicted gene 8279 protein-coding 77056 Mm.122336 NM_029857 ENSMUSG00000041143 Tmco4 4632413C14Rik|AI430825 - 4|4 D3 transmembrane and coiled-coil domains 4 protein-coding 72626 2700078F05Rik - - 1|1 RIKEN cDNA 2700078F05 gene protein-coding 629904 Ighv1-41 EG629904|Gm7014 - 12|12 F2 immunoglobulin heavy variable 1-41 pseudo 102637046 Gm33955 - - 12|12 predicted gene, 33955 ncRNA 100416362 Gm18070 - - 17|17 E1.1 predicted gene, 18070 pseudo 60860 D6Mit33 - - 6 24.42 cM DNA segment, Chr 6, Massachusetts Institute of Technology 33 unknown 78037 Mm.252785 4930565M07Rik - - 4|4 RIKEN cDNA 4930565M07 gene protein-coding 639618 Gm7274 EG639618 - 18|18 A1 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 pseudogene pseudo 76223 Mm.150047 NM_178630 ENSMUSG00000038836 Agbl3 2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3 - 6|6 B1 ATP/GTP binding protein-like 3 protein-coding 100045396 Mm.491466 Gm9908 - - 8|8 predicted gene 9908 unknown 78419 XR_383512 9530047P18Rik - - 14|14 D1 RIKEN cDNA 9530047P18 gene ncRNA 102631763 XR_386387 Gm30020 - - 18 E3|18 predicted gene, 30020 ncRNA 13459 Dp(16)15H Dp15H - - duplication, Chr 16, Harwell 15 other 102639216 XR_385431 Gm35576 - - 17 A2|17 predicted gene, 35576 ncRNA 105246316 Gm41618 - - 17|17 predicted gene, 41618 ncRNA 74930 Mm.398932 NR_046278 ENSMUSG00000113115 4930480M12Rik - - 12|12 A2 RIKEN cDNA 4930480M12 gene ncRNA 107927 Htr1e Htr1ea - - 5-hydroxytryptamine (serotonin) receptor 1E protein-coding 112257 Pbwg1 C10bw1 - 2 33.33 cM postnatal body weight growth 1 unknown 100416945 Gm18329 - - 9|9 A4 high mobility group box 3 pseudogene pseudo 108168524 XM_017318714 LOC108168524 - - Y C3 X-linked lymphocyte-regulated protein PM1-like protein-coding 100041571 Vmn1r-ps18 Gm3412 - 6|6 B3 vomeronasal 1 receptor, pseudogene 18 pseudo 102639319 Gm35659 - - 9|9 predicted gene, 35659 ncRNA 105244200 XR_866426 Gm39850 - - 2 C3|2 predicted gene, 39850 ncRNA 435900 Igkv12-98 Gm16636|ci12 - 6|6 C1 immunoglobulin kappa variable 12-98 other 100124579 Vmn2r-ps118 - - 17|17 A3.2 vomeronasal 2, receptor, pseudogene 118 pseudo 67747 Mm.158173 NM_026357 ENSMUSG00000022431 Ribc2 4930579A10Rik|Trib - 15|15 E2 RIB43A domain with coiled-coils 2 protein-coding 387512 Mm.377919 NM_199159 ENSMUSG00000056203 Tas2r135 Tas2r35|mt2r38 - 6|6 B2.1 taste receptor, type 2, member 135 protein-coding 102633263 XR_382857 Gm31130 - - 13 D1|13 predicted gene, 31130 ncRNA 66834 Mm.2125 NM_025790 ENSMUSG00000006717 Acot13 0610006O17Rik|Them2 - 13|13 A3.1 acyl-CoA thioesterase 13 protein-coding 102634955 Gm32414 - - 2|2 predicted gene, 32414 ncRNA 56379 Mm.390168 NM_019659 ENSMUSG00000041248 Kcnj1 Kir1.1|ROMK|Romk2 - 9|9 A4 potassium inwardly-rectifying channel, subfamily J, member 1 protein-coding 218850 Mm.247767 NM_028945 ENSMUSG00000040651 Fam208a 4732418E12|4933409E02Rik|D14Abb1e|MommeD6 - 14|14 A3 family with sequence similarity 208, member A protein-coding 104798 Mm.310950 NR_045082 ENSMUSG00000112343 Sfta3-ps AI413669|E030019B13Rik|Nanci - 12|12 C1 surfactant associated 3, pseudogene ncRNA 19112 Mm.142728 NM_011167 ENSMUSG00000021345 Prl8a6 Ghd13|PLP-C1|PLP-Ca|PLP-calpha|Prlpc|Prlpc1 - 13 A3.1|13 12.45 cM prolactin family 8, subfamily a, member 6 protein-coding 100093643 Trnai-gau - - - transfer RNA isoleucine (anticodon GAU) tRNA 229003 Mm.315872 NM_183162 ENSMUSG00000027580 Helz2 PDIP1|Pric285|mKIAA1769|mPDIP1 - 2|2 H4 helicase with zinc finger 2, transcriptional coactivator protein-coding 105245008 XR_870824 Gm40522 - - 9 B|9 predicted gene, 40522 ncRNA 16538 Mm.6217 NM_008435 ENSMUSG00000040164 Kcns1 Kv9.1 - 2|2 H3 K+ voltage-gated channel, subfamily S, 1 protein-coding 102639329 Gm35666 - - 12 A3|12 predicted gene, 35666 pseudo 100101488 Trav5d-2 - - 14|14 C2 T cell receptor alpha variable 5D-2 pseudo 52473 Mm.441312 D11Ertd80e - - 11 46.74 cM DNA segment, Chr 11, ERATO Doi 80, expressed unknown 100217468 NR_028561 Snord45b MBII-412 - 3 H3|3 small nucleolar RNA, C/D box 45B snoRNA 212632 Mm.30464 NM_183148 ENSMUSG00000041025 Iffo2 C79267 - 4|4 D3 intermediate filament family orphan 2 protein-coding 102639774 XR_872360 Gm36005 - - 11 A4|11 predicted gene, 36005 ncRNA 546061 XM_011249813 LOC546061 - - 1|8 sp110 nuclear body protein-like protein-coding 277978 Mm.40228 NM_177788 ENSMUSG00000043251 Exoc3l C730015A04Rik|Exoc3l1 - 8|8 D3 exocyst complex component 3-like protein-coding 108167782 XR_001779690 Gm46200 - - 10 B5.1|10 predicted gene, 46200 ncRNA 102638380 XR_377026 Gm34960 - - 5 C3.3|5 predicted gene, 34960 ncRNA 97370 C78948 - - - expressed sequence C78948 unknown 102465628 NR_106004 ENSMUSG00000098574 Mir7037 Gm27447|mmu-mir-7037 - 5|5 G2 microRNA 7037 ncRNA 102639154 XR_391249 Gm35534 - - 7 B2|7 predicted gene, 35534 ncRNA 67593 Mm.251409 NM_026263 ENSMUSG00000029564 4930519G04Rik 1700014B12Rik - 5|5 F RIKEN cDNA 4930519G04 gene protein-coding 105245273 XR_871989 Gm40750 - - 10 C3|10 predicted gene, 40750 ncRNA 105246847 Mm.134244 XR_879492 ENSMUSG00000085196 LOC105246847 - - 19 A uncharacterized LOC105246847 ncRNA 654474 Gm14760 EG654474 - X B|X glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105246371 XR_877187 Gm41668 - - 18 A1|18 predicted gene, 41668 ncRNA 117220 Ap5q - - 9 25.7 cM alcohol preference 5 QTL unknown 105245308 XR_872121 Gm40783 - - 10 D2|10 predicted gene, 40783 ncRNA 97564 Mm.381850 C86942 - - - expressed sequence C86942 protein-coding 102638667 XR_001779339 Gm35177 - - 9 A5.1|9 predicted gene, 35177 ncRNA 100503590 Gm19786 - - 12 A1.2|12 8.17 cM hippocalcin-like protein 1-like pseudo 105243495 XR_880240 Gm39399 - - 11 E1|11 predicted gene, 39399 ncRNA 108167933 XR_001780349 LOC108167933 - - 11 E1 uncharacterized LOC108167933 ncRNA 105244851 XR_872675 Gm40385 - - 12 A3|12 predicted gene, 40385 ncRNA 171282 Mm.482217 NM_134247 ENSMUSG00000052392 Acot4 B430212I04Rik|PTE-Ib|Pte1b|Pte2b - 12|12 D1 acyl-CoA thioesterase 4 protein-coding 111432 Emv14 Akv-2J|Akv-4|Emv-14 - - endogenous ecotropic MuLV 14 other 61687 D6Mit262 - - 6 33.03 cM DNA segment, Chr 6, Massachusetts Institute of Technology 262 unknown 100035813 Bwnd3wk1 - - - body weight, NMR1 x DBA, 3 week, QTL 1 unknown 17932 Mm.458718 NM_008665 ENSMUSG00000010505 Myt1 Nzf2|Nzf2a|Nzf2b|Nztf2 - 2 H4|2 103.77 cM myelin transcription factor 1 protein-coding 100689703 Mm.271989 NR_045696 9330133O14Rik - - 8 E1 RIKEN cDNA 9330133O14 gene ncRNA 102636565 XR_385790 Gm33596 - - 17 E3|17 predicted gene, 33596 ncRNA 102632511 XR_384649 Gm30567 - - 16 A1|16 predicted gene, 30567 ncRNA 107351 Mm.260722 NM_181404 ENSMUSG00000032702 Kank1 A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172 - 19|19 B KN motif and ankyrin repeat domains 1 protein-coding 72201 Mm.387724 NM_152812 ENSMUSG00000040550 Otud6b 2600013N14Rik|AU015433 - 4|4 A1 OTU domain containing 6B protein-coding 232146 Mm.489683 NM_145570 ENSMUSG00000035104 Eva1a BC014699|Fam176a|Tmem166 - 6|6 C3 eva-1 homolog A (C. elegans) protein-coding 105245289 XR_872045 Gm40765 - - 10 D2|10 predicted gene, 40765 ncRNA 100861487 NR_046134 ENSMUSG00000094003 n-R5s128 Rn5s16 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 128 rRNA 102632031 Mm.382134 XR_387634 LOC102632031 - - 5 F uncharacterized LOC102632031 ncRNA 243931 Mm.44141 NM_172298 ENSMUSG00000021217 Tshz3 A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3 - 7|7 B2 teashirt zinc finger family member 3 protein-coding 194974 Mm.79210 NM_177576 ENSMUSG00000040985 Sun3 Sunc1 - 11|11 A1 Sad1 and UNC84 domain containing 3 protein-coding 108803 Mm.73263 NM_175368 ENSMUSG00000044084 Spem2 4933402P03Rik - 11|11 B3 SPEM family member 2 protein-coding 100041313 Gm3267 - - 15 B3.1|15 predicted gene 3267 pseudo 241556 Mm.274159 NM_183180 ENSMUSG00000027217 Tspan18 2610042G18Rik|6720430O15|BB226562 - 2|2 E1 tetraspanin 18 protein-coding 102638785 XR_001782408 LOC102638785 - - 18 B2 40S ribosomal protein S25 unknown 78150 Mm.243806 4930405E02Rik - - 8|8 RIKEN cDNA 4930405E02 gene ncRNA 674332 Gm9620 Gm20220 - 17 11.4 cM|17 A3.3 family with sequence similarity 60, member A pseudogene pseudo 105244793 XR_868588 9030607J07Rik Gm42631 - 5|5 G2 RIKEN cDNA 9030607J07 gene ncRNA 58218 Mm.302438 NM_021407 ENSMUSG00000041754 Trem3 BB134760 - 17|17 C triggering receptor expressed on myeloid cells 3 protein-coding 100035386 Clas3 - - - carcinogen-induced lung adenoma susceptibility 3 unknown 108365 Mtv47 Mtv-43|Mtv-47 - - mammary tumor virus locus 47 other 258841 Mm.223265 NM_146844 ENSMUSG00000075163 Olfr1107 MOR172-2 - 2|2 D olfactory receptor 1107 protein-coding 100418189 Gm19063 - - 4|4 C6 proteasome (prosome, macropain) subunit, beta type 2 pseudogene pseudo 213990 Mm.250703 NM_139153 ENSMUSG00000023353 Agap3 AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3 - 5|5 A3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 protein-coding 97530 C79017 - - - expressed sequence C79017 unknown 102465790 NR_106160 ENSMUSG00000099196 Mir1258 Gm27371|mmu-mir-1258 - 18|18 D3 microRNA 1258 ncRNA 259035 Mm.377800 NM_147033 ENSMUSG00000049674 Olfr714 MOR263-2|P4 - 7|7 E3 olfactory receptor 714 protein-coding 791403 Mm.319176 NR_033497 ENSMUSG00000097652 Mhrt D830015G02Rik|Myheart - 14 C3|14 myosin heavy chain associated RNA transcript ncRNA 27573 D5Buc21 351F9.T7 - - DNA segment, Chr 5, Bucan 21 unknown 117205 l9Rl4 pl-4 - - lethal, Chr 9, Russell 4 protein-coding 667227 Gm8525 EG667227 - Y|Y A1 NOP2 nucleolar protein homolog pseudogene pseudo 436235 Gm5763 EG436235 - X|X F2 regulator of G-protein signaling 3 pseudogene pseudo 100418442 Gm19215 - - 1|1 E4 COP9 (constitutive photomorphogenic) homolog, subunit 8 pseudogene pseudo 76694 1810029E06Rik - - - RIKEN cDNA 1810029E06 gene protein-coding 628726 Rpl26-ps6 EG628726|Gm6908 - 9|9 A5.1 ribosomal protein L26, pseudogene 6 pseudo 69090 Mm.155839 NM_026937 ENSMUSG00000044475 Ascc1 1810015P09Rik|AI550520|ASC1p50|CGI-18 - 10|10 B4 activating signal cointegrator 1 complex subunit 1 protein-coding 102636278 XR_382781 Gm33390 - - 13 D1|13 predicted gene, 33390 ncRNA 78945 T(4;6)77H T77H - - reciprocal translocation, Chr 4 and 6, Harwell 77 other 16647 Mm.12508 NM_010655 ENSMUSG00000018362 Kpna2 2410044B12Rik|IPOA1|PTAC58|Rch1 - 11|11 E1 karyopherin (importin) alpha 2 protein-coding 671971 Gm9544 - - 12|12 C3 thyroid hormone receptor associated protein 3 pseudogene pseudo 62718 D18Mit122 - - 18 30.77 cM DNA segment, Chr 18, Massachusetts Institute of Technology 122 unknown 53313 Mm.6306 NM_016745 ENSMUSG00000020788 Atp2a3 SERCA3b|Serca3 - 11|11 B4 ATPase, Ca++ transporting, ubiquitous protein-coding 111867 Xltr6 - - - xenotropic long terminal repeat-containing proviral locus 6 other 100417009 Gm18359 - - 7|7 D3 vomeronasal 2, receptor 66 pseudogene pseudo 15431 Mm.207763 NM_008273 ENSMUSG00000042499 Hoxd11 E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5 - 2 C3|2 44.13 cM homeobox D11 protein-coding 108470 Ms28 MMS28 - - minisatellites detected by probe MMS28 other 20539 Mm.22374 NM_011404 ENSMUSG00000040010 Slc7a5 4F2LC|D0H16S474E|LAT1|TA1 - 8 E1|8 70.8 cM solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 protein-coding 268301 Mm.3036 NM_172939 ENSMUSG00000098188 Sowahc 4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik - 10|10 B4 sosondowah ankyrin repeat domain family member C protein-coding 102639836 XR_377150 Gm36056 - - 5 G2|5 predicted gene, 36056 ncRNA 629055 XM_017315301 Gm6943 EG629055 - 12|12 A1.2 predicted gene 6943 protein-coding 108169082 XR_001785020 ENSMUSG00000097228 LOC108169082 - - 5 G3 uncharacterized LOC108169082 ncRNA 219134 Mm.275409 NM_145463 ENSMUSG00000044461 Shisa2 9430059P22Rik|MAd2|Tmem46|mShisa|shisa - 14|14 C3 shisa family member 2 protein-coding 16565 Mm.276135 NM_019962 ENSMUSG00000041642 Kif21b 2610511N21Rik|mKIAA0449 - 1 E4|1 59.61 cM kinesin family member 21B protein-coding 637141 Gm14603 - - X|X A4 predicted gene 14603 pseudo 100503871 Mm.380800 4833432E10Rik - - 12|12 A1.1 RIKEN cDNA 4833432E10 gene unknown 105148 Mm.21118 NM_172015 ENSMUSG00000037851 Iars 2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS - 13|13 A5 isoleucine-tRNA synthetase protein-coding 102639964 XR_374749 Gm36153 - - 2 C3|2 predicted gene, 36153 ncRNA 74443 Mm.226534 NM_028944 ENSMUSG00000006675 P4htm 4933406E20Rik|AI853847|BB128974|HIF-PH4|HPH-4|P4H-TM|Ph-4 - 9|9 F2 prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) protein-coding 100038625 Mm.484527 Gm10846 - - - predicted gene 10846 unknown 69926 Mm.473893 NM_001167746 ENSMUSG00000033987 Dnah17 2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028 - 11|11 E2 dynein, axonemal, heavy chain 17 protein-coding 384631 Gm5333 EG384631 - 7|7 C predicted gene 5333 pseudo 385658 Mm.310635 NM_001134457 ENSMUSG00000075033 Nxpe3 Fam55c|Gm1752|Gm611 - 16|16 C1.1 neurexophilin and PC-esterase domain family, member 3 protein-coding 16801 Mm.3181 NM_008488 ENSMUSG00000040940 Arhgef1 Lbcl2|Lsc - 7|7 A3 Rho guanine nucleotide exchange factor (GEF) 1 protein-coding 100504668 Gm20342 - - 1|1 32.23 cM predicted gene, 20342 ncRNA 51938 Mm.275710 NM_026222 ENSMUSG00000027676 Ccdc39 4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh - 3|3 A3 coiled-coil domain containing 39 protein-coding 257800 Olfr1407-ps1 EG257800|GA_x5J8B7W5Q1F-344462-343889 - 1|1 H3 olfactory receptor 1407, pseudogene 1 pseudo 632886 LOC632886 - - 4|4 matrin 3 pseudogene pseudo 77323 Mm.378791 NR_033568 ENSMUSG00000086155 9430041J12Rik - - 7|7 A1 RIKEN cDNA 9430041J12 gene ncRNA 237782 Mm.57726 NM_175491 ENSMUSG00000049323 Smcr8 2310076G09Rik|AI642055|D030073L15Rik - 11|11 B2 Smith-Magenis syndrome chromosome region, candidate 8 homolog (human) protein-coding 108168927 XR_001784233 LOC108168927 - - 4 A1 uncharacterized LOC108168927 ncRNA 380785 Mm.342085 NM_001163175 ENSMUSG00000040867 Begain BM948371|Gm897 - 12|12 F1 brain-enriched guanylate kinase-associated protein-coding 329824 Gm12384 - - 4|4 A5 predicted gene 12384 pseudo 100036416 Bmrbc3 - - - bone marrow RBC 3 unknown 70611 Mm.311026 NM_001033156 ENSMUSG00000035329 Fbxo33 5730501N20Rik|AI642135 - 12|12 C1 F-box protein 33 protein-coding 102631554 XR_386659 Gm29863 - - 19 C1|19 predicted gene, 29863 ncRNA 20701 Mm.439692 NM_009244 ENSMUSG00000071178 Serpina1b D12Ucla2|Dom2|PI2|Spi1-2 - 12 E|12 52.98 cM serine (or cysteine) preptidase inhibitor, clade A, member 1B protein-coding 14580 Mm.1239 NM_010277 ENSMUSG00000020932 Gfap AI836096 - 11 E1|11 66.48 cM glial fibrillary acidic protein protein-coding 71765 Mm.254784 NM_027910 ENSMUSG00000063576 Klhdc3 1300011D16Rik|Peas - 17 22.9 cM|17 C kelch domain containing 3 protein-coding 60949 DXMit50 - - X 23.19 cM DNA segment, Chr X, Massachusetts Institute of Technology 50 unknown 100417283 Gm18501 - - 12|12 E crumbs homolog 1 pseudogene pseudo 56795 Mm.89484 NM_019968 ENSMUSG00000025870 Arl10 Arl10a|Arm1 - 13|13 B1 ADP-ribosylation factor-like 10 protein-coding 21750 Mm.6402 NM_009353 ENSMUSG00000031921 Terf2 TRF2 - 8 D3|8 53.59 cM telomeric repeat binding factor 2 protein-coding 319246 9530056E24Rik - - 2|2 RIKEN cDNA 9530056E24 gene protein-coding 102633686 XR_001780863 Gm31450 - - 13 A1|13 predicted gene, 31450 ncRNA 76485 Mm.8766 NM_029626 ENSMUSG00000021916 Glt8d1 2410004H05Rik|5430414N14Rik|AI450005 - 14|14 B glycosyltransferase 8 domain containing 1 protein-coding 229211 Mm.260997 NM_172678 ENSMUSG00000027710 Acad9 2600017P15Rik|4732402K02|C630012L17Rik|NPD002 - 3|3 B acyl-Coenzyme A dehydrogenase family, member 9 protein-coding 100503078 Gm19541 - - 9|9 42.67 cM predicted gene, 19541 ncRNA 102467244 n-TAtgc11 n-Ta40 - 13 A3.1|13 nuclear encoded tRNA alanine 11 (anticodon TGC) tRNA 791262 Mm.214706 Gm9912 - - - predicted gene 9912 protein-coding 668660 Gm9291 EG668660 - 12 A1.3|12 hippocalcin-like 1 pseudogene pseudo 62569 D12Mit141 - - 12 60.61 cM DNA segment, Chr 12, Massachusetts Institute of Technology 141 unknown 101365 Mm.442234 AW493563 - - - expressed sequence AW493563 protein-coding 102467360 n-TMcat17 n-Tm17 - 8 E1|8 nuclear encoded tRNA methionine 17 (anticodon CAT) tRNA 100039691 Mm.219358 NR_110430 ENSMUSG00000078952 Lncenc1 Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1 - 13 D1|13 long non-coding RNA, embryonic stem cells expressed 1 ncRNA 76394 1700012M20Rik - - 11|11 RIKEN cDNA 1700012M20 gene protein-coding 102639293 XR_375837 Gm35639 - - 3 F1|3 predicted gene, 35639 ncRNA 73579 Mm.233603 XR_867780 1700094M23Rik Gm43832 - 3|3 H3 RIKEN cDNA 1700094M23 gene ncRNA 100418206 Gm19074 - - 10|10 B5.3 TGF-beta activated kinase 1/MAP3K7 binding protein 2 pseudogene pseudo 110370 Tcrd-V5 - - - T cell receptor delta, variable 5 other 492887 Cd4ts6 - - 13 5.92 cM CD4 T cell subset 6 unknown 320387 D930030O05Rik - - 7|7 C RIKEN cDNA D930030O05 gene unknown 105246040 XR_875663 1700121M21Rik - - 15|15 F1 RIKEN cDNA 1700121M21 gene ncRNA 384091 Gm13092 - - 4|4 E2 predicted gene 13092 protein-coding 209192 U06147 Dtgn2 - 8 A2 cDNA sequence U06147 protein-coding 108167542 XR_001778612 Gm46047 - - 8 C3|8 predicted gene, 46047 ncRNA 108301 Mmv4 Mmv-4 - - MCF endogenous virus 4 other 14630 Mm.292676 NM_008129 ENSMUSG00000028124 Gclm AI649393|Gcmc|Glclr - 3 G1|3 52.94 cM glutamate-cysteine ligase, modifier subunit protein-coding 109573 Rw In(5)6H-d|In(5)6H-p|rump-white - - rump white, inversion unknown 625785 Mm.390996 NR_033619 Gm6623 EG625785 - 17|17 B1 akirin 1 pseudogene pseudo 72247 1700013K18Rik - - 9|9 RIKEN cDNA 1700013K18 gene protein-coding 27563 D5Buc28 388L8.T7 - 5 38.44 cM DNA segment, Chr 5, Bucan 28 unknown 105243196 XR_870470 Gm39183 - - 8 B3.1|8 predicted gene, 39183 ncRNA 108167554 XR_001778655 Gm46052 - - 8 E1|8 predicted gene, 46052 ncRNA 258249 Mm.377393 NM_207145 ENSMUSG00000061614 Olfr845 GA_x5J8B7W6RL5-13522154-13521822|MOR150-1|MOR150-1P|MOR150-2|Olfr1522-ps1 - 9|9 A2 olfactory receptor 845 protein-coding 70522 5730415C11Rik - - 2|2 RIKEN cDNA 5730415C11 gene protein-coding 53605 Mm.290407 NM_015781 ENSMUSG00000058799 Nap1l1 AA407126|AI256722|D10Ertd68e|NAP-1 - 10 D1|10 58.67 cM nucleosome assembly protein 1-like 1 protein-coding 62359 D6Mit334 - - 6 59.43 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 334 unknown 13510 Mm.37953 NM_010079 ENSMUSG00000069441 Dsg1a DG1|DGI|Dsg1|dsg1-alpha - 18 A2|18 11.29 cM desmoglein 1 alpha protein-coding 110259 Hnl - - - hypothalamic norepinephrine level unknown 105243343 XR_870544 Gm39291 - - 9 A1|9 predicted gene, 39291 ncRNA 22261 uns - - - unsteady unknown 108167372 XR_001781771 LOC108167372 - - 15 F1 uncharacterized LOC108167372 ncRNA 52495 D12Ertd208e - - 12 5.95 cM DNA segment, Chr 12, ERATO Doi 208, expressed unknown 111746 Igk-V14 Vk14 - - immunoglobulin kappa chain variable 14 (V14) other 56399 Mm.328945 NM_019774 ENSMUSG00000024045 Akap8 1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639 - 17|17 B1 A kinase (PRKA) anchor protein 8 protein-coding 15163 Mm.4091 NM_008225 ENSMUSG00000022831 Hcls1 AW213261|HS1 - 16|16 B3 hematopoietic cell specific Lyn substrate 1 protein-coding 56599 247d24Sp6 - - - DNA segment, 247d24Sp6 unknown 111873 Iap3rb3 - - - intracisternal A-type particle, U3 region, SINE repeat b-3 other 108167868 LOC108167868 - - 11 B4 60S ribosomal protein L35a pseudogene pseudo 11828 Mm.34043 NM_016689 ENSMUSG00000028435 Aqp3 AQP-2 - 4|4 A5 aquaporin 3 protein-coding 76671 Mm.109877 5330406M23Rik - - 6|6 RIKEN cDNA 5330406M23 gene protein-coding 666704 Mm.298091 NM_001081415 ENSMUSG00000079003 Samd1 AA589507 - 8|8 C2 sterile alpha motif domain containing 1 protein-coding 102640380 XR_384120 Gm36451 - - 15 D1|15 predicted gene, 36451 ncRNA 328580 Mm.380934 NM_001163319 ENSMUSG00000051786 Tubgcp6 AI843275|D430023H11|GCP-6|mKIAA1669 - 15|15 E3 tubulin, gamma complex associated protein 6 protein-coding 29809 Mm.25833 NM_013862 ENSMUSG00000026721 Rabgap1l 5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471 - 1|1 H2.1 RAB GTPase activating protein 1-like protein-coding 791294 Mm.30508 NR_045618 ENSMUSG00000054945 Gm9958 - - 5 E1|5 predicted gene 9958 ncRNA 493581 LOC493581 - - 9|9 uncharacterized LOC493581 unknown 235841 Obox4-ps23 Gm4897 - 7 A2|7 oocyte specific homeobox 4, pseudogene 23 pseudo 54325 Mm.282096 NM_019422 ENSMUSG00000006390 Elovl1 AA407424|BB151133|Ssc1 - 4|4 D2.1 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 protein-coding 100124354 Traj35 Gm16664 - 14|14 C2 T cell receptor alpha joining 35 other 100416264 Gm18007 - - 6|6 B2.3 ribosomal protein S2 pseudogene pseudo 108168361 XR_001782304 LOC108168361 - - 17 C uncharacterized LOC108168361 ncRNA 105246082 XR_875944 Gm41429 - - 16 A3|16 predicted gene, 41429 ncRNA 100035706 Psrs5 - - - psoriasis susceptibility 5 unknown 100043692 Gm15531 - - 6 D3|6 ribosomal protein S27 pseudogene pseudo 67323 Mm.45442 NM_001099295 ENSMUSG00000078593 1700042G07Rik - - 4|4 D1 RIKEN cDNA 1700042G07 gene protein-coding 102640859 XR_380322 Gm36827 - - 10 B4|10 predicted gene, 36827 ncRNA 72898 Mm.151745 NM_028386 ENSMUSG00000029348 Asphd2 2900006N09Rik|9230106G13Rik - 5|5 F aspartate beta-hydroxylase domain containing 2 protein-coding 19547 Rb(4.14)8H Rb8H - - Robertsonian translocation, Chr 4 and 14, Harwell 8 other 108167827 XM_017314187 Gm46238 - - 10 C2|10 predicted gene, 46238 protein-coding 380768 Mm.29367 NM_001008423 ENSMUSG00000062961 Ccdc177 Gm1568 - 12|12 C3 coiled-coil domain containing 177 protein-coding 108169023 XM_017321193 Gm46901 - - 5 A1|5 predicted gene, 46901 protein-coding 65098 Mm.209349 NM_022985 ENSMUSG00000030629 Zfand6 3110005P07Rik|Awp1|Za20d3 - 7|7 D3 zinc finger, AN1-type domain 6 protein-coding 100038677 Gm10588 - - 4 B3|4 predicted gene 10588 unknown 111380 Mtv6 Mls-3|Mls3|Mtv-6 - - mammary tumor virus locus 6 other 102465591 NR_105944 ENSMUSG00000099066 Mir6978 Gm27858|mmu-mir-6978 - 17|17 D microRNA 6978 ncRNA 102642038 XR_872124 Gm10741 - - 10|10 D2 predicted gene 10741 ncRNA 639787 Gm7278 EG639787 - 1 G2|1 ornithine decarboxylase, structural 1 pseudogene pseudo 50883 Mm.279308 NM_016681 ENSMUSG00000029521 Chek2 CHK2|Cds1|HUCDS1|Rad53 - 5|5 F checkpoint kinase 2 protein-coding 68441 Mm.31178 NM_178376 ENSMUSG00000070934 Rraga 1300010C19Rik|AI255374|FIP-1|RAGA - 4|4 C4 Ras-related GTP binding A protein-coding 330578 Mm.5796 NM_177895 ENSMUSG00000053528 A530021J07Rik - - 7|7 D3 Riken cDNA A530021J07 gene protein-coding 257943 Mm.309892 NM_001011778 ENSMUSG00000062037 Olfr285 MOR160-3 - 15|15 F1 olfactory receptor 285 protein-coding 16232 In(10)57Rk In57Rk - - inversion, Chr 10, Roderick 57 other 74132 Mm.26696 NM_028774 ENSMUSG00000029634 Rnf6 1200013I08Rik|5730419H05Rik|AA537053 - 5|5 G3 ring finger protein (C3H2C3 type) 6 protein-coding 76956 2900001A22Rik - - 7|7 RIKEN cDNA 2900001A22 gene protein-coding 12368 Mm.281379 NM_009811 ENSMUSG00000027997 Casp6 CASP-6|Mch2 - 3|3 G3 caspase 6 protein-coding 668459 Gm9182 EG668459 - 10|10 D3 predicted gene 9182 pseudo 387144 NR_029566 ENSMUSG00000065500 Mir10b Mirn10b|mir-10b|mmu-mir-10b - 2|2 C3 microRNA 10b ncRNA 13323 Del(8)50H Del50H - - deletion, Chr 8, Harwell 50 other 72305 Mm.383489 NR_131163 ENSMUSG00000114772 2210404E10Rik - - 19|19 A RIKEN cDNA 2210404E10 gene ncRNA 333050 Mm.437947 NM_001034873 ENSMUSG00000061578 Ksr2 - - 5|5 F kinase suppressor of ras 2 protein-coding 100124452 NR_030611 ENSMUSG00000076049 Mir598 Mirn598|mir-598|mmu-mir-598 - 14 D1|14 microRNA 598 ncRNA 78263 Mm.400650 4632411P08Rik AV311149 - 5|5 RIKEN cDNA 4632411P08 gene unknown 102636382 XR_380550 Gm33464 - - 10 B5.3|10 predicted gene, 33464 ncRNA 105247470 LOC105247470 - - - uncharacterized LOC105247470 ncRNA 100034809 Cia16 mCia16 - - collagen induced arthritis QTL 16 unknown 102632602 XR_378680 Gm16553 - - 8 A1.1|8 1.92 cM predicted gene 16553 ncRNA 85092 D5Mit178 - - 5 3.69 cM DNA segment, Chr 5, Massachusetts Institute of Technology 178 unknown 98580 Mm.394898 AU023525 - - - expressed sequence AU023525 unknown 20289 Mm.322821 NM_198885 ENSMUSG00000034161 Scx BB114693|Bhlha41|Scl - 15 D3|15 35.92 cM scleraxis protein-coding 105246253 XR_876733 Gm41561 - - 17 A3.3|17 predicted gene, 41561 ncRNA 624049 XM_011249643 Gm6468 EG624049 - 5|5 E3 predicted gene 6468 protein-coding 238831 Mm.98910 NM_172807 ENSMUSG00000021713 Ppwd1 4632422M10Rik|A330090G21Rik - 13|13 D1 peptidylprolyl isomerase domain and WD repeat containing 1 protein-coding 102633172 Gm31067 - - Y|Y tRNA methyltransferase 112 homolog pseudo 100035925 Rafar2 - - - retinoic acid induced forelimb autopod reduction 2 unknown 101055806 XM_011245278 Gm10378 - - 14 B predicted gene 10378 protein-coding 58523 Mm.25298 NM_021448 ENSMUSG00000024271 Elp2 AU023723|Epl2|StIP1|Statip1 - 18|18 A2 elongator acetyltransferase complex subunit 2 protein-coding 17882 Mm.422801 NM_144961 ENSMUSG00000033196 Myh2 MHC2A|MyHC-IIa|Myh2a|Myhs-f|Myhs-f1|Myhsf1 - 11 B3|11 40.59 cM myosin, heavy polypeptide 2, skeletal muscle, adult protein-coding 102631930 XR_870683 A030010E16Rik - - 9|9 A5.1 RIKEN cDNA A030010E16 gene ncRNA 227743 Mm.270866 NM_177345 ENSMUSG00000038696 Mapkap1 AI591529|D230039K05Rik|Sin1 - 2|2 B mitogen-activated protein kinase associated protein 1 protein-coding 102639304 XR_882336 ENSMUSG00000100715 Gm28074 CH36-488A23.5 - Y C2|Y predicted gene 28074 ncRNA 548633 D19Mgc5 - - - DNA segment, Chr 19, MRC UK Mouse Genome Centre 5 unknown 80283 Mm.166858 NM_030251 ENSMUSG00000030083 Abtb1 AI847549|BC003234|BPOZ|EF1ABP - 6|6 D1 ankyrin repeat and BTB (POZ) domain containing 1 protein-coding 257995 Olfr882-ps1 MOR162-10P - 9|9 A4 olfactory receptor 882, pseudogene 1 pseudo 78482 Mm.391486 NM_030107 ENSMUSG00000072878 1700123L14Rik - - 6|6 D3 nucleoporin 50 pseudogene pseudo 258301 Mm.377421 NM_146304 ENSMUSG00000070821 Olfr1340 MOR258-6 - 4|4 D2.1 olfactory receptor 1340 protein-coding 668997 Gm9439 EG668997 - X A2|X glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 80877 Mm.439825 NM_030695 ENSMUSG00000028080 Lrba C80285|D3Ertd775e|Lab300|Lba - 3|3 F1 LPS-responsive beige-like anchor protein-coding 100417901 Gm12961 - - 4|4 D1 predicted gene 12961 pseudo 102640593 Gm36621 - - 16|16 predicted gene, 36621 ncRNA 114715 Mm.245890 NM_033524 ENSMUSG00000027351 Spred1 5730461F13Rik|AL024345|AW047647 - 2|2 E5 sprouty protein with EVH-1 domain 1, related sequence protein-coding 105245241 XR_001779682 Gm15608 - - 10 C1|10 39.72 cM predicted gene 15608 ncRNA 102631755 XR_379325 Gm30015 - - 9 A5.1|9 predicted gene, 30015 ncRNA 108168688 XR_001782948 Gm46719 - - 4 D3|4 predicted gene, 46719 ncRNA 75164 Mm.351320 4930527J03Rik - - 1|1 H4 RIKEN cDNA 4930527J03 gene unknown 100418340 Gm13732 - - 2|2 D nudix (nucleoside diphosphate linked moiety X)-type motif 21 pseudogene pseudo 114809 Bwtq1 - - - body weight QTL 1 unknown 105245750 XR_001781253 Gm41149 - - 14 C1|14 predicted gene, 41149 ncRNA 102638469 XR_379648 ENSMUSG00000111363 Gm35024 - - 9 E1|9 predicted gene, 35024 ncRNA 100417495 Gm18646 - - 8|8 B3.3 adaptor protein complex AP-2, mu1 pseudogene pseudo 100885837 NR_049198 ENSMUSG00000093480 Mir5624 Gm25075|mir-5624|mmu-mir-5624 - 13|13 C3 microRNA 5624 ncRNA 105244459 XR_867342 Gm40064 - - 3 E1|3 predicted gene, 40064 ncRNA 17215 Mm.4502 NM_008563 ENSMUSG00000041859 Mcm3 AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m - 1|1 A4 minichromosome maintenance complex component 3 protein-coding 102634228 Gm31861 - - 6|6 predicted gene, 31861 pseudo 105245188 XR_871764 Gm40675 - - 10 B4|10 predicted gene, 40675 ncRNA 100862456 XM_006537451 LOC100862456 - - - DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein-coding 71311 4933428L12Rik - - 14|14 RIKEN cDNA 4933428L12 gene protein-coding 76438 Mm.41854 NM_181397 ENSMUSG00000039316 Rftn1 2310015N21Rik|AI853526 - 17|17 C raftlin lipid raft linker 1 protein-coding 78073 Mm.12411 NR_040306 6720468P15Rik - - 19|19 D2 RIKEN cDNA 6720468P15 gene ncRNA 66989 Mm.435 NM_025888 ENSMUSG00000005936 Kctd20 2410004N11Rik|AI451943|AW541186|D17Ertd562e - 17 A3.3|17 15.03 cM potassium channel tetramerisation domain containing 20 protein-coding 111551 Pmv38 Pmv-38 - - polytropic murine leukemia virus 38 other 70499 5730409L17Rik - - 6|6 RIKEN cDNA 5730409L17 gene protein-coding 102633202 XR_386408 Gm31089 - - 18 E3|18 predicted gene, 31089 ncRNA 102637955 Gm29531 - - Y|Y predicted gene 29531 protein-coding 109279886 LOC109279886 Mm18 - - VISTA enhancers mm18 and mm257 biological-region 66114 Mm.178012 NM_025362 ENSMUSG00000061118 Dnajc30 1300007M11Rik|Wbscr18 - 5|5 G2 DnaJ heat shock protein family (Hsp40) member C30 protein-coding 112205 Ity2 - - 11 105.28 cM immunity to S. typhimurium 2 unknown 665780 Mm.482067 NM_001185173 ENSMUSG00000095339 Zscan4b EG665780 - 7|7 A1 zinc finger and SCAN domain containing 4B protein-coding 70789 Mm.105278 NM_027552 ENSMUSG00000026866 Kynu 4432411A05Rik - 2|2 B kynureninase (L-kynurenine hydrolase) protein-coding 109757 Hya H-Y|Sdma - Y|Y histocompatibility Y protein-coding 327824 Mm.451987 NM_183200 5330438D12Rik - - 10|10 D2 RIKEN cDNA 5330438D12 gene unknown 102632693 XM_006512957 Gm30698 - - 10 A4|10 predicted gene, 30698 protein-coding 108168404 Gm46644 - - 19 C3|19 predicted gene, 46644 pseudo 22286 Mm.10205 NM_009482 ENSMUSG00000047751 Utf1 AI505934 - 7|7 F4 undifferentiated embryonic cell transcription factor 1 protein-coding 102634836 XR_387840 Gm32327 - - 8 C2|8 predicted gene, 32327 ncRNA 404344 Olfr185-ps1 GA_x5J8B7W8B52-298374-299143 - 16|16 C1.3 olfactory receptor 185, pseudogene 1 pseudo 16465 jg - - - jagged tail unknown 258416 Mm.271345 NM_146424 ENSMUSG00000095527 Olfr888 MOR162-4 - 9|9 A4 olfactory receptor 888 protein-coding 105245419 Gm40877 - - 12|12 predicted gene, 40877 ncRNA 27484 56T - - - DNA segment, 56T unknown 102638738 Gm35230 - - 4|4 predicted gene, 35230 ncRNA 110120382 LOC110120382 - - - VISTA enhancer mm996 biological-region 18475 Mm.200859 NM_008775 ENSMUSG00000003131 Pafah1b2 2610005M20Rik|AI747451|AU021353|Pafahb|mus[b] - 9|9 A5.2 platelet-activating factor acetylhydrolase, isoform 1b, subunit 2 protein-coding 14198 Mm.397619 NM_010210 ENSMUSG00000060579 Fhit AW045638|Fra14A2 - 14 A1|14 5.61 cM fragile histidine triad gene protein-coding 73376 Mm.73222 NM_028522 ENSMUSG00000062154 Tex33 1700061J05Rik|Ean57 - 15|15 E1 testis expressed 33 protein-coding 791276 A930039A15Rik - - - RIKEN cDNA A930039A15 gene unknown 229599 Mm.331218 NM_001033302 ENSMUSG00000038550 Ciart Chrono|Gm129 - 3|3 F2.1 circadian associated repressor of transcription protein-coding 328695 Mm.293308 NM_001033404 ENSMUSG00000075002 Gm813 Gm1781 - 16|16 C1.2 predicted gene 813 protein-coding 102635601 Gm32892 - - 17 A3.3|17 predicted gene, 32892 pseudo 271377 Mm.282814 NM_173026 ENSMUSG00000022601 Zbtb11 9230110G02Rik|ZNF-U69274 - 16|16 C1.1 zinc finger and BTB domain containing 11 protein-coding 104570 Mm.276386 NM_134034 ENSMUSG00000020463 Ppp4r3b AW011752|AW557776|Smek2|mKIAA1387 - 11|11 A3.3 protein phosphatase 4 regulatory subunit 3B protein-coding 100415920 Gm12304 - - 11|11 B3 ribosomal protein L31 pseudogene pseudo 258035 Mm.377334 NM_001011807 ENSMUSG00000094539 Olfr191 MOR183-5P - 16|16 C1.3 olfactory receptor 191 protein-coding 56550 Mm.180052 NM_019912 ENSMUSG00000091896 Ube2d2a 1500034D03Rik|Ubc2e|Ube2d2|ubc4 - 18|18 B2 ubiquitin-conjugating enzyme E2D 2A protein-coding 102639365 Mm.399129 XR_375419 Gm35695 - - 2 H4|2 predicted gene, 35695 ncRNA 105243451 XR_870906 Gm27188 - - 9 D|9 predicted gene 27188 ncRNA 24115 Mm.31577 NM_011913 ENSMUSG00000037418 Best1 Bmd|Vmd2|mBest1 - 19|19 A bestrophin 1 protein-coding 100039265 Mm.473947 Gm12703 - - 4|4 C5 predicted gene 12703 unknown 100313518 Mm.284246 Gm9868 - - 8 A4|8 predicted gene 9868 unknown 110052 Mm.131150 NM_025900 ENSMUSG00000021377 Dek 1810019E15Rik|D13H6S231E - 13 A5|13 24.5 cM DEK oncogene (DNA binding) protein-coding 432551 Hspd1-ps3 Gm12141|Hspd1-1p - 11|11 A5 heat shock protein 1 (chaperonin), pseudogene 3 pseudo 14309 Mm.57155 NM_013523 ENSMUSG00000032937 Fshr - - 17|17 E5 follicle stimulating hormone receptor protein-coding 108169048 XR_001784872 LOC108169048 - - 5 C3.2 uncharacterized LOC108169048 ncRNA 102633241 Gm31116 - - 2|2 predicted gene, 31116 ncRNA 100036541 Gm9744 - - - predicted gene 9744 protein-coding 16266 In(2)2H-p In(2)2H|In2H - - inversion, Chr 2, Harwell 2, proximal other 73302 Mm.272760 NR_015496 ENSMUSG00000099353 1700031M16Rik 4930413L20Rik - 15|15 F1 RIKEN cDNA 1700031M16 gene ncRNA 100417408 Gm18595 - - 5|5 F coiled-coil domain containing 77 pseudogene pseudo 18599 Mm.20854 NM_011059 ENSMUSG00000025329 Padi1 AV236283|Pdi1 - 4 D3|4 72.62 cM peptidyl arginine deiminase, type I protein-coding 105244315 Gm39949 - - 2|2 predicted gene, 39949 ncRNA 105377 Mm.209730 NM_134071 ENSMUSG00000021597 Slf1 2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik - 13|13 C1 SMC5-SMC6 complex localization factor 1 protein-coding 111677 Ms15-1 - - - minisatellite 15-1 detected by probe 33.15 other 62543 D11Mit188 - - 11 27.39 cM DNA segment, Chr 11, Massachusetts Institute of Technology 188 unknown 61780 D3Mit252 - - - DNA segment, Chr 3, Massachusetts Institute of Technology 252 unknown 272027 Mm.249594 NM_173033 ENSMUSG00000035495 Tstd2 3010020C06 - 4|4 B1 thiosulfate sulfurtransferase (rhodanese)-like domain containing 2 protein-coding 100035486 Bdln9 - - - body length 9 unknown 105246984 XR_880619 Gm42172 - - X A2|X predicted gene, 42172 ncRNA 52428 Mm.286600 NM_027897 ENSMUSG00000030494 Rhpn2 1300002E07Rik|AA536890|C85860|D7Ertd784e - 7 B2|7 21.36 cM rhophilin, Rho GTPase binding protein 2 protein-coding 102632313 XR_385878 Gm30421 - - 17 E4|17 predicted gene, 30421 ncRNA 320208 Mm.207484 NM_177102 ENSMUSG00000061702 Tmem91 A830041P22Rik|DSPC3|SynDIG3 - 7|7 A3 transmembrane protein 91 protein-coding 62629 D14Mit113 - - 14 31.51 cM DNA segment, Chr 14, Massachusetts Institute of Technology 113 unknown 14085 Mm.3798 NM_010176 ENSMUSG00000030630 Fah swst - 7 D3|7 48.36 cM fumarylacetoacetate hydrolase protein-coding 52715 Mm.277638 NM_025918 ENSMUSG00000020925 Ccdc43 2610001E01Rik|D11Ertd707e - 11 E1|11 66.48 cM coiled-coil domain containing 43 protein-coding 105245222 XR_871882 Gm40706 - - 17 B1|17 predicted gene, 40706 ncRNA 102638845 Gm35313 - - 5|5 predicted gene, 35313 ncRNA 100124569 Vmn2r-ps79 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 79 pseudo 100417526 Gm18665 - - Y|Y A1 ring finger and WD repeat domain 2 pseudogene pseudo 68875 Mm.273785 NM_178874 ENSMUSG00000042066 Tmcc2 1110063G11Rik - 1|1 E4 transmembrane and coiled-coil domains 2 protein-coding 62403 D4Mit1003 D17Mit163 - 4 38.4 cM DNA segment, Chr 4, Massachusetts Institute of Technology 1003 unknown 27948 D10Nds2 - - 10 55.13 cM DNA segment, Chr 10, Nuffield Department of Surgery 2 unknown 100124489 NR_030644 ENSMUSG00000076946 Mir582 Mirn582|mir-582|mmu-mir-582 - 13 D2.1|13 microRNA 582 ncRNA 102467640 n-TCgca3 n-Tc3 - 6 B2.3|6 nuclear encoded tRNA cysteine 3 (anticodon GCA) tRNA 68994 Mm.261028 NM_183277 ENSMUSG00000094732 1500015L24Rik - - 19|19 B RIKEN cDNA 1500015L24 gene ncRNA 493107 Hdlq17 - - 9 24.45 cM HDL QTL 17 unknown 62102 D11Mit90 - - 11 42.99 cM DNA segment, Chr 11, Massachusetts Institute of Technology 90 unknown 70536 Mm.293870 NM_027455 ENSMUSG00000024084 Qpct 5730422A13Rik - 17|17 E3 glutaminyl-peptide cyclotransferase (glutaminyl cyclase) protein-coding 100416920 Gm18322 - - 18|18 D3 modulator of apoptosis 1 pseudogene pseudo 102640923 Mm.367571 NR_028579 ENSMUSG00000074235 Gm10649 - - 8|8 C1 predicted gene 10649 ncRNA 102465608 NR_105973 ENSMUSG00000098824 Mir7006 Gm27398|mmu-mir-7006 - 2|2 H4 microRNA 7006 ncRNA 61850 D1Mit400 - - 1 74.66 cM DNA segment, Chr 1, Massachusetts Institute of Technology 400 unknown 102635147 Gm32559 - - 1|1 predicted gene, 32559 ncRNA 105244751 XR_868428 Gm40306 - - 5 C2|5 predicted gene, 40306 ncRNA 105244903 XR_872781 Gm40427 - - 12 C1|12 predicted gene, 40427 ncRNA 67671 Mm.238817 NM_023372 ENSMUSG00000057322 Rpl38 0610025G13Rik|Rbt|Ts|Tss - 11 79.82 cM|11 E2 ribosomal protein L38 protein-coding 102636160 XR_380547 4930423B08Rik - - 10|10 B5.3 RIKEN cDNA 4930423B08 gene ncRNA 105245860 LOC105245860 - - 14 E4 coiled-coil domain-containing protein 58 pseudogene pseudo 780927 Ighv8-3 - - 12|12 F2 immunoglobulin heavy variable V8-3 pseudo 73965 Mm.243823 NR_040696 ENSMUSG00000104870 4930448I18Rik - - 5|5 B3 RIKEN cDNA 4930448I18 gene ncRNA 100861986 Gm21378 - - 13 D2.3|13 predicted gene, 21378 pseudo 381371 Mm.330284 NM_201366 ENSMUSG00000064263 Platr26 Gm1631 - 2|2 C2 pluripotency associated transcript 26 ncRNA 629524 Mm.432076 NM_001011779 ENSMUSG00000059460 Olfr286 EG629524|MOR286-2 - 15|15 F1 olfactory receptor 286 protein-coding 101399 AW742329 - - - expressed sequence AW742329 unknown 112225 Wt10q3 - - - body weight, 10 weeks, QTL 3 unknown 11601 Mm.439874 NM_007426 ENSMUSG00000031465 Angpt2 Agpt2|Ang-2|Ang2 - 8 A1.3|8 10.3 cM angiopoietin 2 protein-coding 105244329 XR_866865 Gm14199 - - 2 H1|2 75.41 cM predicted gene 14199 ncRNA 19529 Rb(3.8)2Ei Rb2Ei - - Robertsonian translocation, Chr 3 and 8, Eicher 2 other 67397 Mm.154570 NM_026129 ENSMUSG00000029616 Erp29 1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db - 5|5 F endoplasmic reticulum protein 29 protein-coding 78323 Mm.25814 NM_175273 ENSMUSG00000032305 Fam219b 2310046O06Rik|AI594866 - 9|9 B family with sequence similarity 219, member B protein-coding 112163564 BB038229 - - - expressed sequence BB038229 protein-coding 723815 NR_029823 ENSMUSG00000065441 Mir128-2 Mirn128-2|Mirn128b|mir-128-2|mir-128b - 9|9 F3 microRNA 128-2 ncRNA 102638359 LOC102638359 - - 2 A3 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 57385 Mm.117118 NM_020621 ENSMUSG00000044359 P2ry4 P2Y4|P2Y4R - X|X C3 pyrimidinergic receptor P2Y, G-protein coupled, 4 protein-coding 320685 Mm.121549 NM_178788 ENSMUSG00000031562 Dctd 6030466N05Rik - 8|8 B1.1 dCMP deaminase protein-coding 22099 Mm.426637 NM_011650 ENSMUSG00000026374 Tsn 2610034C24Rik|AU040286|C3PO|TB-RBP - 1|1 E2.3 translin protein-coding 16571 Mm.383091 NM_008446 ENSMUSG00000034311 Kif4 AI323435|D330050K22Rik|Kns4 - X C3|X 43.72 cM kinesin family member 4 protein-coding 72656 Mm.246713 NM_178112 ENSMUSG00000040738 Ints8 2810013E07Rik|AV063769|D130008D20Rik - 4|4 A1 integrator complex subunit 8 protein-coding 105246005 XR_875516 Gm41372 - - 15 E1|15 predicted gene, 41372 ncRNA 100043239 Mm.475613 NM_001166641 ENSMUSG00000096744 Gm4307 - - 10 D1|10 predicted gene 4307 protein-coding 56347 Mm.22776 NM_146200 ENSMUSG00000030738 Eif3c 110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl - 7 69.14 cM|7 F3 eukaryotic translation initiation factor 3, subunit C protein-coding 78849 Mm.440930 NR_015457 ENSMUSG00000084960 B430010I23Rik - - 8|8 A4 RIKEN cDNA B430010I23 gene ncRNA 98999 Mm.297074 NM_001033196 ENSMUSG00000039501 Znfx1 AI481105|Astx3 - 2|2 H3 zinc finger, NFX1-type containing 1 protein-coding 102633325 Gm31177 - - 10|10 predicted gene, 31177 pseudo 105245651 XR_874012 LOC105245651 - - 13 C3 nucleoside diphosphate kinase B pseudogene pseudo 27854 D0Nds12 - - - DNA segment, Nuffield Department of Surgery 12 unknown 100042579 Trav4n-3 Gm10898 - 14|14 C2 T cell receptor alpha variable 4N-3 other 629845 Ighv6-3 Gm16930 - 12|12 F1 immunoglobulin heavy variable 6-3 other 259301 Mm.24283 NM_153069 ENSMUSG00000036216 Leap2 leap-2 - 11|11 B1.3 liver-expressed antimicrobial peptide 2 protein-coding 28199 Mm.11535 NM_133734 ENSMUSG00000022214 Dcaf11 0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23 - 14 C3|14 28.19 cM DDB1 and CUL4 associated factor 11 protein-coding 105246507 XR_877605 Gm41788 - - 18 E3|18 predicted gene, 41788 ncRNA 76062 Mm.380755 NR_038060 ENSMUSG00000113035 5830428M24Rik 100040862|Gm3007 - 12|12 C2 RIKEN cDNA 5830428M24 gene ncRNA 12036 Mm.24210 NM_009737 ENSMUSG00000030826 Bcat2 Bcat(m)|Bcat-2|Eca40 - 7 B3|7 29.36 cM branched chain aminotransferase 2, mitochondrial protein-coding 52545 Mm.428705 D12Ertd216e - - 12 26.71 cM DNA segment, Chr 12, ERATO Doi 216, expressed unknown 50788 Mm.334764 NM_015821 ENSMUSG00000033313 Fbxl8 FBL8 - 8|8 D3 F-box and leucine-rich repeat protein 8 protein-coding 100043106 Gm10247 - - 16|16 A1 ribosomal protein L35A pseudogene pseudo 67942 Mm.10314 NM_026468 ENSMUSG00000062683 Atp5g2 1810041M08Rik - 15|15 F3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) protein-coding 403350 F830003O12Rik - - 18|18 RIKEN cDNA F830003O12 gene unknown 102632212 XR_867384 Gm30352 - - 3 F1|3 predicted gene, 30352 ncRNA 102632932 XR_385069 Gm30881 - - 16 C4|16 predicted gene, 30881 ncRNA 18574 Mm.390792 NM_008800 ENSMUSG00000022489 Pde1b Pde1b1 - 15|15 F3 phosphodiesterase 1B, Ca2+-calmodulin dependent protein-coding 258528 Mm.377554 NM_146535 ENSMUSG00000042869 Olfr1370 MOR256-14 - 13|13 A2 olfactory receptor 1370 protein-coding 668146 Gm9002 EG668146 - 10|10 D2 ribosomal protein L18a pseudogene pseudo 100418434 Gm12399 - - 3|3 F2.2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 pseudogene pseudo 105245117 Gm40611 - - 10|10 predicted gene, 40611 protein-coding 100417337 Gm18540 - - 6|6 C1 sprouty homolog 2 pseudogene pseudo 73201 Mm.148779 3110073H01Rik AI606459 - 15|15 RIKEN cDNA 3110073H01 gene protein-coding 108180 Rnu3b-ps6 - - - U3B small nuclear RNA pseudogene 6 pseudo 258734 Mm.377664 NM_146739 ENSMUSG00000058014 Olfr502 MOR204-8 - 7|7 E3 olfactory receptor 502 protein-coding 100039786 XR_873139 Gm2423 - - 13|13 A1 predicted gene 2423 pseudo 102636417 LOC102636417 - - 12 D2 60S ribosomal protein L21-like pseudo 76156 Mm.234314 NM_029528 ENSMUSG00000029861 Fam131b 6330503C03Rik|6530406I18Rik|AV277466 - 6 B2.1|6 family with sequence similarity 131, member B protein-coding 102633195 XR_385639 Gm31083 - - 17 C|17 predicted gene, 31083 ncRNA 109129 Mm.29214 NM_133839 ENSMUSG00000026766 Mmadhc 2010311D03Rik|AI314967|CblD - 2|2 C1.1 methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria protein-coding 105245436 XM_011244235 Gm40892 - - 12 D3|12 predicted gene, 40892 protein-coding 108168654 XM_017318865 LOC108168654 - - Y E Y-linked testis-specific protein 1-like protein-coding 102638354 XR_384450 Gm34939 - - 15 F1|15 predicted gene, 34939 ncRNA 69473 Mm.158281 NM_023511 ENSMUSG00000047564 Krtap3-1 2310003K17Rik|KAP3.1|KRTAP3.1 - 11|11 D keratin associated protein 3-1 protein-coding 100035954 Fatpad1 - - - fat pad 1 unknown 675762 Gm9652 - - 7|7 A1 predicted gene 9652 pseudo 20042 Mm.371846 NM_011295 ENSMUSG00000061983 Rps12 - - 10|10 A4 ribosomal protein S12 protein-coding 74634 4930423D22Rik - - 12|12 RIKEN cDNA 4930423D22 gene protein-coding 327747 Mm.80407 NM_177793 ENSMUSG00000045555 Mettl24 9030224M15Rik - 10|10 B1 methyltransferase like 24 protein-coding 102636020 XR_385665 Gm33211 - - 17 D|17 predicted gene, 33211 ncRNA 75218 Mm.399310 4930535E02Rik - - 3|3 RIKEN cDNA 4930535E02 gene protein-coding 621603 Mm.34137 NM_001177438 ENSMUSG00000075296 Aldh3b2 AI848594|C130048D07Rik - 19|19 A aldehyde dehydrogenase 3 family, member B2 protein-coding 105242918 XR_881983 Gm38995 - - 7 B2|7 predicted gene, 38995 ncRNA 85198 D13Mit264 - - 13 5.61 cM DNA segment, Chr 13, Massachusetts Institute of Technology 264 unknown 76072 Mm.169565 NM_153504 ENSMUSG00000063851 Rnf183 5830442J12Rik - 4|4 B3 ring finger protein 183 protein-coding 620779 Mm.439625 NM_001081284 ENSMUSG00000078639 Gm12695 - - 4|4 C5 predicted gene 12695 protein-coding 104325 Lzm-s2 - - 10|10 M lysozyme structural 2 protein-coding 100418222 Gm19080 - - 3|3 H1 Parkinson disease (autosomal recessive, early onset) 7 pseudogene pseudo 70640 Mm.87629 NM_027490 ENSMUSG00000024472 Dcp2 2410015D23Rik|5730537H01Rik|AL118268 - 18|18 B3 decapping mRNA 2 protein-coding 101056205 XM_006500752 ENSMUSG00000108976 Gm29797 - - 2 H4|2 predicted gene, 29797 protein-coding 672572 Gm9568 - - 15 D3|15 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 257889 Mm.377287 NM_001005481 ENSMUSG00000067186 Olfr132 MOR256-49 - 17|17 B1 olfactory receptor 132 protein-coding 628697 Gm6906 EG628697 - 10|10 A4 ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog pseudogene pseudo 108169199 Gm43124 - - 6 F3|6 small nuclear ribonucleoprotein E pseudogene pseudo 75313 Mm.399359 4930551I15Rik - - 10|10 RIKEN cDNA 4930551I15 gene protein-coding 442845 Mm.244829 NM_001002795 F730035P03Rik - - 7|7 E2 RIKEN cDNA F730035P03 gene unknown 100502746 Gm15607 - - 5 G2|5 75.32 cM predicted gene 15607 pseudo 105245334 Gm40808 - - 10|10 predicted gene, 40808 ncRNA 108073 Mm.240881 NM_177328 ENSMUSG00000056755 Grm7 6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7 - 6|6 E3 glutamate receptor, metabotropic 7 protein-coding 100416244 Gm15549 - - 8|8 B3.3 ribosomal protein 10 pseudogene pseudo 102632333 XR_382655 Gm30432 - - 13 C1|13 predicted gene, 30432 ncRNA 100038720 Mm.248640 Gm10425 - - - predicted gene 10425 unknown 105246443 Gm41732 - - 18|18 predicted gene, 41732 ncRNA 52530 Mm.28203 NM_026631 ENSMUSG00000001056 Nhp2 2410130M07Rik|D11Ertd175e|Nola2 - 11 B1.3|11 31.14 cM NHP2 ribonucleoprotein protein-coding 116529 Hts Hyps - 9 26.85 cM hypothermia sensitivity unknown 102640084 XR_386934 Gm36239 - - X A6|X predicted gene, 36239 ncRNA 243659 Mm.20114 NM_172891 ENSMUSG00000032899 Styk1 9130025L13|AI326477|Nok - 6|6 F3 serine/threonine/tyrosine kinase 1 protein-coding 66388 Mm.20257 NM_025530 ENSMUSG00000025193 Cutc 2310039I18Rik|AI326282|CGI-32 - 19|19 C3 cutC copper transporter protein-coding 102466840 NR_106115 ENSMUSG00000099050 Mir7655 Gm27794|mmu-mir-7655 - 2|2 A3 microRNA 7655 ncRNA 102465561 NR_105895 ENSMUSG00000098774 Mir6930 Gm27436|mmu-mir-6930 - 11|11 D microRNA 6930 ncRNA 14708 Mm.222496 NM_010319 ENSMUSG00000048240 Gng7 AI840417 - 10 C1|10 39.72 cM guanine nucleotide binding protein (G protein), gamma 7 protein-coding 102632732 XR_374343 Gm30728 - - 2 B|2 predicted gene, 30728 ncRNA 102640570 XR_376479 Gm36604 - - 4 C6|4 predicted gene, 36604 ncRNA 382066 Mm.335039 NM_199315 ENSMUSG00000042496 Prdm10 Gm1112|tristanin - 9|9 A4 PR domain containing 10 protein-coding 102467560 n-TKctt1 n-Tk1 - - nuclear encoded tRNA lysine 1 (anticodon CTT) tRNA 22229 Mm.6254 NM_009464 ENSMUSG00000032942 Ucp3 AI645527|Slc25a9|UCP-3 - 7 E2|7 54.36 cM uncoupling protein 3 (mitochondrial, proton carrier) protein-coding 665731 Gm7761 EG665731 - 1|1 A5 predicted gene 7761 pseudo 193022 Mm.169508 NR_037977 Gm53 - - 11|11 D predicted gene 53 ncRNA 238722 Mm.461254 NM_001081680 ENSMUSG00000069184 Zfp72 Zfp74 - 13|13 C1 zinc finger protein 72 protein-coding 53114 EC185RR - - - DNA segment, EC185RR unknown 110098 Rasl2-5 - - - RAS-like, family 2, locus 5 protein-coding 330962 Mm.335247 NM_178933 ENSMUSG00000053862 Slc51b Ostb - 9|9 C solute carrier family 51, beta subunit protein-coding 100035122 Adip11 - - - adiposity 11 unknown 102467387 n-TTagt9 n-Tt9 - 7 B2|7 nuclear encoded tRNA threonine 9 (anticodon AGT) tRNA 100038496 Mm.350232 Gm10655 - - - predicted gene 10655 unknown 100041154 Rpl35a-ps7 Gm3167 - 6 B2.3|6 ribosomal protein L35A, pseudogene 7 pseudo 70594 Mm.491050 NR_045801 ENSMUSG00000062046 5730460C07Rik - - 3|3 H3 RIKEN cDNA 5730460C07 gene ncRNA 93916 D16Jhu54 147O9.SP6 - - DNA segment, Chr 16, Johns Hopkins University 54 unknown 61626 D8Mit262 - - 8 39.04 cM DNA segment, Chr 8, Massachusetts Institute of Technology 262 unknown 72991 Mm.483077 2900075N08Rik - - X|X RIKEN cDNA 2900075N08 gene protein-coding 320100 Mm.40336 NM_177073 ENSMUSG00000008318 Relt E430021K24Rik|Tnfrsf19l - 7|7 E2 RELT tumor necrosis factor receptor protein-coding 108167699 LOC108167699 - - 9 E3.3 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 100040299 Mm.486155 NM_001205009 ENSMUSG00000112600 Gm2696 - - 10 C1|10 predicted gene 2696 protein-coding 15234 Mm.267078 NM_010427 ENSMUSG00000028864 Hgf C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF - 5 A3|5 7.07 cM hepatocyte growth factor protein-coding 381485 Mm.35419 NM_001081281 ENSMUSG00000060913 Trim55 D830041C10Rik|Murf2|Rnf29 - 3|3 A2 tripartite motif-containing 55 protein-coding 319470 Mm.330649 C530025M09Rik - - 2|2 G3 RIKEN cDNA C530025M09 gene protein-coding 77482 C030041M11Rik - - 2|2 RIKEN cDNA C030041M11 gene protein-coding 100039741 Gm2396 - - 9 E3.1|9 predicted gene 2396 protein-coding 93837 Mm.79760 NM_033605 ENSMUSG00000025592 Dach2 9430028N04Rik - X E1|X 49.13 cM dachshund family transcription factor 2 protein-coding 74967 Mm.390704 NR_045712 ENSMUSG00000115001 4930474H20Rik - - 14|14 E2.1 RIKEN cDNA 4930474H20 gene ncRNA 61420 D5Mit204 - - 5 42.22 cM DNA segment, Chr 5, Massachusetts Institute of Technology 204 unknown 76630 Mm.130952 NM_029682 ENSMUSG00000024776 Stambpl1 1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP - 19|19 C1 STAM binding protein like 1 protein-coding 105244772 XR_868515 Gm40324 - - 5 G1.1|5 predicted gene, 40324 ncRNA 78243 Mm.117483 NM_030062 ENSMUSG00000021797 9230112D13Rik - - 14|14 B RIKEN cDNA 9230112D13 gene protein-coding 102634030 XM_006517498 Gm31714 - - 13 B3|13 predicted gene, 31714 protein-coding 434727 Mm.291786 NM_001085525 ENSMUSG00000060685 Fthl17c EG434727|Fthl17L2|Gm14511 - X A1.1|X ferritin, heavy polypeptide-like 17, member C protein-coding 58202 Mm.116418 NM_021393 ENSMUSG00000013465 Nelfb A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b - 2|2 A3 negative elongation factor complex member B protein-coding 100503725 Gm17508 - - 9|9 16.6 cM predicted gene, 17508 ncRNA 639116 Mrgprb11-ps EG639116|Gm7262|MrgB11|Mrgprb11 - 7 B4|7 MAS-related GPR, member B11, pseudogene pseudo 102633220 XR_387500 Gm31102 - - 1 G3|1 predicted gene, 31102 ncRNA 100416847 Gm18292 - - 9|9 E1 methyltransferase like 9 pseudogene pseudo 231691 Mm.28685 NM_145565 ENSMUSG00000029597 Sds 4432411H13Rik|SDH - 5|5 F serine dehydratase protein-coding 433637 Mm.331285 NR_045845 ENSMUSG00000104835 Gm5547 EG433637 - 3|3 F2.2 predicted gene 5547 ncRNA 100035986 Mskt4 - - - musculoskeletal traits 4 unknown 68221 Mm.142735 NM_183271 ENSMUSG00000051769 Wfdc15a 1700049M11Rik|Wfdcl1 - 2|2 H3 WAP four-disulfide core domain 15A protein-coding 110677 TelXqYq1 TelXqYq-1 - XY 76.0 cM telomeric sequence, Chr X, Chr Y, q arm 1 protein-coding 15931 Mm.233083 NM_010498 ENSMUSG00000035847 Ids AW214631 - X A7.2|X 36.01 cM iduronate 2-sulfatase protein-coding 492858 Sluc24 - - 15 1.84 cM susceptibility to lung cancer 24 unknown 107793 Tel8p - - - telomeric sequence, Chr 8, centromere end protein-coding 102466844 NR_106135 ENSMUSG00000099075 Mir7674 Gm27563|mmu-mir-7674 - 2|2 B microRNA 7674 ncRNA 66902 Mm.28500 NM_024433 ENSMUSG00000062937 Mtap 1300019I21Rik|MSAP - 4|4 C4 methylthioadenosine phosphorylase protein-coding 54683 Mm.279782 NM_012021 ENSMUSG00000024953 Prdx5 AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV - 19 A|19 5.08 cM peroxiredoxin 5 protein-coding 85071 D6Mit94 - - 6 29.56 cM DNA segment, Chr 6, Massachusetts Institute of Technology 94 unknown 114542 Bbaa7 Bb7 - 11 21.96 cM B.burgdorferi-associated arthritis 7 unknown 67445 Mm.258993 NM_026161 ENSMUSG00000040794 C1qtnf4 0710001E10Rik|9430004J15Rik|CTRP4 - 2|2 E1 C1q and tumor necrosis factor related protein 4 protein-coding 102635904 XR_378516 Gm33122 - - 7 F3|7 predicted gene, 33122 ncRNA 102636264 XM_011243615 Gm33378 - - 10 C1|10 predicted gene, 33378 protein-coding 102638102 XR_872744 Gm34745 - - 12 B3|12 predicted gene, 34745 ncRNA 100294583 Mm.399726 NM_001159743 ENSMUSG00000054204 Alkal2 6230419C23Rik|Fam150b - 12 A2|12 ALK and LTK ligand 2 protein-coding 641660 Rpl7a-ps11 EG641660|Gm7322 - X|X F5 ribosomal protein L7A, pseudogene 11 pseudo 217057 Mm.24868 NM_175004 ENSMUSG00000072582 Ptrh2 A230072I16Rik|Bit1|CGI-147 - 11|11 C peptidyl-tRNA hydrolase 2 protein-coding 21691 Tel-rs2 - - - telomere, related sequence 2 protein-coding 112184 Skts6 - - 9 50.18 cM skin tumor susceptibility 6 unknown 102465898 NR_106189 ENSMUSG00000098388 Mir8109 Gm27495|mmu-mir-8109 - 8|8 C3 microRNA 8109 ncRNA 53012 CA7.4 - - - DNA segment, CA7.4 unknown 625870 Gm6632 EG625870 - 5|5 C2 C1GALT1-specific chaperone 1 pseudogene pseudo 74482 Mm.484026 NM_028968 ENSMUSG00000065968 Ifitm7 4933438K12Rik|Mil4 - 16|16 A1 interferon induced transmembrane protein 7 protein-coding 77833 A930032L01Rik - - 13|13 RIKEN cDNA A930032L01 gene protein-coding 108169018 XR_001784582 Gm46899 - - 4 E2|4 predicted gene, 46899 ncRNA 100417793 Gm18830 - - 5|5 A3 neuroepithelial cell transforming gene 1 pseudogene pseudo 14112 Fau-ps3 - - - Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived), pseudogene 3 pseudo 52981 3f1 - - - DNA segment, 3f1 unknown 100042000 Gm3618 - - 14 A1|14 predicted gene 3618 protein-coding 99952 Mm.403822 BB187690 - - - expressed sequence BB187690 protein-coding 271300 Cyp2d41-ps EG271300|Gm5062 - 15|15 E1 cytochrome P450, family 2, subfamily d, member 41, pseudogene pseudo 73065 2900092O11Rik - - 1|1 RIKEN cDNA 2900092O11 gene protein-coding 665725 Mm.416993 NR_151543 Gm7759 EG665725 - 1|1 A5 predicted gene 7759 ncRNA 109065 Mm.107180 NM_027269 ENSMUSG00000020973 Dnaaf2 Ktu|TU54|kintoun|mknt - 12|12 C2 dynein, axonemal assembly factor 2 protein-coding 102636355 LOC102636355 - - - uncharacterized LOC102636355 ncRNA 102633107 XR_385638 Gm31015 - - 17 C|17 predicted gene, 31015 ncRNA 494218 Gm11359 EG494218 - 13|13 A3.1 prolactin pseudogene pseudo 105245353 Mm.438025 XM_011243805 Gm40824 - - 11 A3.1|11 predicted gene, 40824 protein-coding 239857 Mm.394300 NM_178721 ENSMUSG00000064115 Cadm2 2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2 - 16|16 C1.3-C2 cell adhesion molecule 2 protein-coding 666284 Gm8023 EG666284 - 1|1 H4 predicted gene 8023 pseudo 102635688 XR_391538 Gm32963 - - 7 C|7 predicted gene, 32963 ncRNA 15444 Mm.384452 NM_010471 ENSMUSG00000028785 Hpca - - 4|4 D2.2 hippocalcin protein-coding 111998 Hlq4 - - - heat loss QTL 4 unknown 74295 NM_183102 1700092C17Rik - - 2|2 A3 RIKEN cDNA 1700092C17 gene unknown 621146 Gm13803 - - 2|2 E1 corepressor interacting with RBPJ, 1 pseudogene pseudo 57253 Mm.377132 NM_020502 ENSMUSG00000037140 Tas2r108 T2R108|T2r8|Tas2r4|Tas2r8|mGR08|mt2r8 - 6|6 B1 taste receptor, type 2, member 108 protein-coding 53764 D7H19S19 D19S19h - - DNA segment, Chr 7, human D19S19 unknown 105247210 Gm42348 - - 4|4 predicted gene, 42348 ncRNA 16852 Mm.43831 NM_008495 ENSMUSG00000068220 Lgals1 AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1 - 15 E1|15 37.7 cM lectin, galactose binding, soluble 1 protein-coding 61502 D7Mit222 - - 7 59.13 cM DNA segment, Chr 7, Massachusetts Institute of Technology 222 unknown 109510 Sle6 - - 5 26.89 cM systemic lupus erythematosus susceptibility 6 unknown 107535 Bkm3 Bkm-3 - - banded krait minor satellite DNA 3 other 100041792 Gm14034 - - 2|2 C1.1 ribosomal protein S9 pseudogene pseudo 102640146 Gm36281 - - 2|2 predicted gene, 36281 ncRNA 72895 Mm.367159 NM_028385 ENSMUSG00000034269 Setd5 2900045N06Rik|C330007C20|C85544|mKIAA1757 - 6|6 E3 SET domain containing 5 protein-coding 102210 AU015696 - - - expressed sequence AU015696 unknown 18822 Mm.23951 NM_011122 ENSMUSG00000019055 Plod1 2410042F05Rik|AI854890|AV007929|Lh1|Plod - 4 E2|4 78.57 cM procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 protein-coding 66158 Mm.391252 NM_024170 ENSMUSG00000067925 Rtl8a 1110012O05Rik|Cxx1a|Mar8.2A/B|Mart8b - X|X A5 retrotransposon Gag like 8A protein-coding 100418178 Gm14898 - - X|X E1 guanosine diphosphate (GDP) dissociation inhibitor 2 pseudogene pseudo 353204 Mm.317892 NM_001199270 ENSMUSG00000059343 Aldoart1 4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2 - 4|4 C3 aldolase 1 A, retrogene 1 protein-coding 61789 D3Mit228 - - 3 30.08 cM DNA segment, Chr 3, Massachusetts Institute of Technology 228 unknown 53002 H9SP6 - - - DNA segment, H9SP6 unknown 68682 Mm.148425 NM_152808 ENSMUSG00000057193 Slc44a2 1110028E10Rik|CTL2 - 9|9 A3 solute carrier family 44, member 2 protein-coding 208943 Mm.41339 NM_001081322 ENSMUSG00000033590 Myo5c 9130003O20Rik|BB085560|C330029I24 - 9|9 D myosin VC protein-coding 233987 Mm.102799 NM_145591 ENSMUSG00000058748 Zfp958 - - 8|8 A1.1 zinc finger protein 958 protein-coding 75234 Mm.259672 NM_029219 ENSMUSG00000028793 Rnf19b 4930534K13Rik|4930555L03Rik|Ibrdc3 - 4|4 D2.2 ring finger protein 19B protein-coding 105243665 Mm.489395 XR_878071 Gm4203 100043063 - X|X A1.2 predicted gene 4203 ncRNA 100302593 NR_028274 ENSMUSG00000095118 Snord14d Gm23710 - 9 A5.1|9 small nucleolar RNA, C/D box 14D snoRNA 100417216 Gm18455 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 387348 Mm.377910 NM_207023 ENSMUSG00000059382 Tas2r120 T2R20|Tas2r20|mGR20|mt2r47 - 6 G1|6 64.03 cM taste receptor, type 2, member 120 protein-coding 108169133 Gm42573 - - 6 A3.1|6 60S ribosomal protein L21 pseudogene pseudo 62728 D19Mit104 - - 19 51.45 cM DNA segment, Chr 19, Massachusetts Institute of Technology 104 unknown 103096 AA522026 - - - expressed sequence AA522026 unknown 244958 Mm.335337 NM_001101482 ENSMUSG00000042761 Mrap2 BB633055 - 9|9 E3.1 melanocortin 2 receptor accessory protein 2 protein-coding 17304 Mm.1451 NM_008594 ENSMUSG00000030605 Mfge8 AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin - 7 D2|7 44.9 cM milk fat globule-EGF factor 8 protein protein-coding 385448 Gm5395 EG385448 - X|X F3 aldo-keto reductase family 1, member B3 pseudogene pseudo 85195 D18Mit110 - - 18 5.88 cM DNA segment, Chr 18, Massachusetts Institute of Technology 110 unknown 62815 D13Mit267 - - 13 21.8 cM DNA segment, Chr 13, Massachusetts Institute of Technology 267 unknown 102634166 Gm31817 - - 9|9 predicted gene, 31817 ncRNA 102641941 Gm38586 - - 4|4 predicted gene, 38586 ncRNA 110120547 LOC110120547 - - - VISTA enhancer mm1417 biological-region 100036503 Chlq9 - - 17 39.3 cM circulating hormone level QTL 9 unknown 13712 Mm.405823 NM_007922 ENSMUSG00000009406 Elk1 Elk-1 - X A1.3|X 16.45 cM ELK1, member of ETS oncogene family protein-coding 78589 Mm.439875 Gm9802 D730001C10Rik - 12|12 predicted gene 9802 unknown 100417957 Gm18920 - - X|X C1 family with sequence similarity 48, member A pseudogene pseudo 105243208 Gm39190 - - 8|8 predicted gene, 39190 ncRNA 94040 Mm.244078 NM_053155 ENSMUSG00000021097 Clmn 9330188N17Rik|AI428889|AI788815|mKIAA1188 - 12|12 E calmin protein-coding 102637070 XM_006523122 ENSMUSG00000068071 LOC102637070 - - 16 C3.3 keratin-associated protein 20-2-like protein-coding 111071 Odc-rs7 BRS-7|Odc-7 - - ornithine decarboxylase, related sequence 7 pseudo 23920 Mm.42041 NM_011832 ENSMUSG00000005640 Insrr Irr - 3 F1|3 38.7 cM insulin receptor-related receptor protein-coding 102632556 Gm28185 - - Y|Y predicted gene 28185 pseudo 100041007 Gm3091 - - 14|14 A1 predicted gene 3091 pseudo 100042782 Mm.388703 NM_001099326 ENSMUSG00000078206 Fthl17d Fthl17L3|Gm14458 - X A1.1|X ferritin, heavy polypeptide-like 17, member D protein-coding 19173 Mm.8911 NM_011186 ENSMUSG00000022193 Psmb5 - - 14 C2|14 27.86 cM proteasome (prosome, macropain) subunit, beta type 5 protein-coding 229589 Mm.14155 NM_173347 ENSMUSG00000015711 Prune1 9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1 - 3|3 F2.1 prune exopolyphosphatase protein-coding 432830 Mm.276361 Gm17747 - - 14|14 A3 predicted gene, 17747 ncRNA 102632352 XR_374336 Gm28643 - - 2 B|2 predicted gene 28643 ncRNA 105243113 XR_870106 Gm39124 - - 8 A1.1|8 predicted gene, 39124 ncRNA 69672 Mm.294457 NM_175150 ENSMUSG00000021497 Txndc15 2310047H23Rik|AI854086|C5orf14|UNQ335 - 13|13 B1 thioredoxin domain containing 15 protein-coding 69496 Mm.55734 NM_027094 ENSMUSG00000021790 Dydc1 1700029M23Rik - 14 B|14 DPY30 domain containing 1 protein-coding 100035400 Blct6 - - - blood cell traits 6 unknown 112369 Pabr1 Abrg1 - 6 53.05 cM plasma apolipoprotein B (human) regulator 1 unknown 102634679 XR_374901 Gm32210 - - 2 E5|2 predicted gene, 32210 ncRNA 100035181 Salpa4 - - - serum alkaline phosphatase activity 4 unknown 100039089 Mm.443549 NM_001134674 ENSMUSG00000089873 Mup13 Gm13513|Mup11 - 4 B3|4 major urinary protein 13 protein-coding 11428 Mm.331547 NM_007386 ENSMUSG00000028405 Aco1 Aco-1|Irebp|Irp1 - 4 A5|4 20.24 cM aconitase 1 protein-coding 61166 D15Mit10 - - 15 5.35 cM DNA segment, Chr 15, Massachusetts Institute of Technology 10 unknown 77267 9430018C23Rik - - 9|9 RIKEN cDNA 9430018C23 gene protein-coding 17144 Mm.196415 NM_020020 ENSMUSG00000079350 Magea8 Mage-a8 - X F3|X 72.38 cM melanoma antigen, family A, 8 protein-coding 20666 Mm.41702 NM_009234 ENSMUSG00000063632 Sox11 1110038H03Rik|6230403H02Rik|AI836553|end1 - 12|12 A2 SRY (sex determining region Y)-box 11 protein-coding 107733 Mm.23010 NM_001031808 ENSMUSG00000036850 Mrpl41 MRP-L27|Rpml27 - 2|2 A3 mitochondrial ribosomal protein L41 protein-coding 110850 Tarbp2-rs1 - - - TAR (HIV) RNA binding protein 2, related sequence 1 protein-coding 436059 Mm.491825 NM_001272045 ENSMUSG00000091813 Ces2h Ces2|EG436059|Gm5744 - 8|8 D3 carboxylesterase 2H protein-coding 102635425 Gm15553 - - 16 C3.1|16 43.36 cM predicted gene 15553 pseudo 104910 Mm.202653 NM_001012310 ENSMUSG00000048856 Slc25a47 AI132487|AI876593|HDMCP - 12|12 F1 solute carrier family 25, member 47 protein-coding 192185 Mm.28347 NM_138671 ENSMUSG00000029063 Nadk 4432404C02Rik|BC004012 - 4|4 E2 NAD kinase protein-coding 102634661 Mm.337881 NR_151614 ENSMUSG00000099878 Gm28178 - - 1 C1.1|1 predicted gene 28178 ncRNA 109880 Mm.245513 NM_139294 ENSMUSG00000002413 Braf 9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e - 6 B1|6 18.43 cM Braf transforming gene protein-coding 15563 Mm.4835 NM_008314 ENSMUSG00000039106 Htr5a Htr5 - 5 B1|5 13.24 cM 5-hydroxytryptamine (serotonin) receptor 5A protein-coding 102639129 XR_387599 Gm35515 - - 5 F|5 predicted gene, 35515 ncRNA 62035 D2Mit524 - - 2 40.88 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 524 unknown 111529 Tcra-V7 - - - T cell receptor alpha, variable 7 other 105245983 Gm41351 - - 15|15 predicted gene, 41351 ncRNA 100043932 Gm14352 - - X|X A1.1 RNA binding protein with multiple splicing 2 pseudogene pseudo 15962 Mm.57127 NM_010502 ENSMUSG00000095498 Ifna1 Ifa1 - 4 C4|4 42.04 cM interferon alpha 1 protein-coding 107755 Hv1 Hv-1 - - hepatitis virus (MHV-2) susceptibility unknown 12891 Mm.5249 NM_009947 ENSMUSG00000022212 Cpne6 AU067659|BB076446 - 14|14 C3 copine VI protein-coding 105244032 XR_865791 Gm39718 - - 1 H4|1 predicted gene, 39718 ncRNA 226098 Mm.61107 NM_172637 ENSMUSG00000041180 Hectd2 4921524L07|A630025O09Rik|AW212605 - 19|19 C2 HECT domain E3 ubiquitin protein ligase 2 protein-coding 100416148 Gm17942 - - 18|18 B1 SET translocation pseudogene pseudo 102634474 XR_870281 Gm32050 Gm45583 - 8 A2|8 predicted gene, 32050 ncRNA 105247090 XR_881076 Gm42250 - - 4 A1|4 predicted gene, 42250 ncRNA 105290 Mm.379269 AU021895 - - - expressed sequence AU021895 protein-coding 258750 Mm.377672 NM_146755 ENSMUSG00000073974 Olfr551 MOR29-1 - 7|7 E3 olfactory receptor 551 protein-coding 668106 Mm.379675 NM_001323251 Gm8978 EG668106 - 19|19 C1 predicted gene 8978 protein-coding 108168011 XR_001780636 Gm46360 - - 12 C3|12 predicted gene, 46360 ncRNA 100885845 NR_049206 ENSMUSG00000093441 Mir5710 Gm22872|mir-5710|mmu-mir-5710 - 9|9 A5.3 microRNA 5710 ncRNA 106052 Mm.234191 NM_134099 ENSMUSG00000022184 Fbxo4 1700096C12Rik|AI851261|AW494535|Fbx4 - 15|15 A1 F-box protein 4 protein-coding 383546 Gm5260 EG383546 - 1|1 E2.1 phosphatidylinositol transfer protein, cytoplasmic 1 pseudogene pseudo 17852 mut2 mut-2 - - mutator 2 unknown 20910 Mm.278865 NM_009295 ENSMUSG00000026797 Stxbp1 AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1 - 2 B|2 22.09 cM syntaxin binding protein 1 protein-coding 112255 Cia7 - - - collagen induced arthritis QTL 7 unknown 100417543 Gm18677 - - 8|8 C2 THO complex 6 homolog pseudogene pseudo 14205 Mm.297978 NM_010216 ENSMUSG00000031380 Vegfd AI325264|Figf|VEGF-D - X F5|X 76.35 cM vascular endothelial growth factor D protein-coding 19038 Mm.4587 NM_008908 ENSMUSG00000024538 Ppic CyP-20c - 18|18 D1 peptidylprolyl isomerase C protein-coding 236069 Mm.276881 NR_033612 ENSMUSG00000096233 Gm13238 - - 4|4 E1 carnitine deficiency-associated gene expressed in ventricle 3 pseudogene pseudo 100041694 Mm.259350 NR_028520 ENSMUSG00000073000 Gm10451 - - 12|12 C3 predicted gene 10451 ncRNA 102632467 Gm30531 - - 17 A3.2|17 predicted gene, 30531 pseudo 102631927 XR_378800 Gm30135 - - 8 A2|8 predicted gene, 30135 ncRNA 100504287 Ifi203-ps Gm16340 - 1 H3|1 80.65 cM interferon activated gene 203, pseudogene pseudo 18315 Mm.246524 NM_146563 ENSMUSG00000066896 Olfr18 MOR145-1|MTPCR34 - 9|9 A3 olfactory receptor 18 protein-coding 61374 D4Mit215 - - 4 26.59 cM DNA segment, Chr 4, Massachusetts Institute of Technology 215 unknown 280668 Mm.1453 NM_172126 ENSMUSG00000072647 Adam1a Adam1|Ftna - 5 F|5 61.84 cM a disintegrin and metallopeptidase domain 1a protein-coding 402751 C430019N01Rik - - 5|5 RIKEN cDNA C430019N01 gene protein-coding 58865 Mm.354229 NM_021480 ENSMUSG00000021953 Tdh - - 14|14 D1 L-threonine dehydrogenase protein-coding 74236 Mm.443274 NM_001167581 ENSMUSG00000062543 Gsdmcl1 1700022L20Rik|Gsdmdc2 - 15|15 D1 gasdermin C-like 1 pseudo 624512 Mm.469895 NM_001105065 ENSMUSG00000096691 Vmn2r33 - - 7|7 A1 vomeronasal 2, receptor 33 protein-coding 60505 Mm.157689 NM_021782 ENSMUSG00000027718 Il21 IL-21 - 3|3 B interleukin 21 protein-coding 109163 Mm.440359 NM_175404 3010003L21Rik - - 6|6 G3 RIKEN cDNA 3010003L21 gene ncRNA 101036 BB155983 - - - expressed sequence BB155983 unknown 668200 Mm.464782 NM_001244651 ENSMUSG00000095104 Esp15 EG668200|Esp16|Gm9041 - 17|17 B1 exocrine gland secreted peptide 15 protein-coding 100418000 Gm18940 - - 12|12 C2 family with sequence similarity 20, member B pseudogene pseudo 100042188 Gm3711 - - 16 A1|16 zinc finger, BED domain containing 4 pseudogene pseudo 100504195 Mm.291129 NM_027587 ENSMUSG00000030771 Micalcl 4921517J23Rik - 7|7 F1 MICAL C-terminal like protein-coding 66980 Mm.386789 NM_025883 ENSMUSG00000024982 Zdhhc6 2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6 - 19|19 D2 zinc finger, DHHC domain containing 6 protein-coding 111478 Loh1 - - - loss of heterozygosity, region 1 other 60808 D4Mit38 - - 4 24.82 cM DNA segment, Chr 4, Massachusetts Institute of Technology 38 unknown 100316834 NR_035475 ENSMUSG00000088980 Mir669m-2 mmu-mir-669m-2 - 2 A1|2 8.22 cM microRNA 669m-2 ncRNA 108169066 LOC108169066 - - 5 F 60S ribosomal protein L27a pseudogene pseudo 105242556 XR_868668 Gm38735 - - 5 G2|5 predicted gene, 38735 ncRNA 100503513 Gm19739 - - 3|3 39.79 cM predicted gene, 19739 pseudo 108167785 Gm46203 - - 10 D2|10 60S ribosomal protein L29 pseudogene pseudo 329159 Mm.98697 NR_045837 ENSMUSG00000099950 9130227L01Rik - - 1|1 C1.2 RIKEN cDNA 9130227L01 gene ncRNA 668611 Gm9267 EG668611 - 12|12 F2 predicted gene 9267 pseudo 100126777 Mm.471590 NM_001177583 ENSMUSG00000095540 Esp4 Gm20580 - 17 B2|17 19.54 cM exocrine gland secreted peptide 4 protein-coding 105243508 Gm39410 - - 9|9 predicted gene, 39410 ncRNA 109279902 LOC109279902 Mm85 - - VISTA enhancer mm85 biological-region 102634318 XR_379225 Gm31928 - - 9 A4|9 predicted gene, 31928 ncRNA 667692 Mm.441727 NM_001270900 ENSMUSG00000097878 Gm8764 EG667692 - 10|10 D1 predicted gene 8764 protein-coding 102639570 XR_387899 Gm35850 Gm45637 - 8 C4|8 predicted gene, 35850 ncRNA 110241 Is(In8B2-8B3.1;6C1)1Tshir Rim4 - - Insertion, Chr8 B2-B3.1 into Chr 6C1, Toshihiko Shiroishi 1 protein-coding 109592 Prt5 Prt-5|Smg-2 - - protease 5 protein-coding 100504230 Mm.200422 AU020206 - - 7|7 expressed sequence AU020206 unknown 102634817 Mm.208142 XR_384789 Gm32312 - - 16 B2|16 predicted gene, 32312 ncRNA 100862247 Mm.389537 NM_001270432 ENSMUSG00000095234 Gm21586 - - 4 A5|4 predicted gene, 21586 protein-coding 105734 Mm.275583 NM_178646 ENSMUSG00000103906 Tigd5 AA409802|AA409995|AI666797 - 15|15 D3 tigger transposable element derived 5 protein-coding 381204 Mm.359041 NM_001009546 ENSMUSG00000054999 Naaladl1 Gm964|Naaladasel - 19|19 A N-acetylated alpha-linked acidic dipeptidase-like 1 protein-coding 100041281 XM_006514351 ENSMUSG00000096481 Gm3250 - - 10 C1|10 predicted gene 3250 protein-coding 19194 Mm.29197 NM_008953 ENSMUSG00000042459 Bpifa2 Bpifa2e|Psp - 2 H1|2 76.15 cM BPI fold containing family A, member 2 protein-coding 258404 Mm.271334 NM_146409 ENSMUSG00000110912 Olfr1080 MOR192-1 - 2|2 D olfactory receptor 1080 protein-coding 320782 Mm.107370 NM_177260 ENSMUSG00000056498 Tmem154 9930117H01Rik - 3|3 F1 transmembrane protein 154 protein-coding 19823 Mm.28235 NM_011279 ENSMUSG00000051234 Rnf7 Rbx2|SAG - 9|9 E3.3 ring finger protein 7 protein-coding 102641859 Mm.211743 NR_154551 Rsf1os2 Gm15623 - 7|7 E2 remodeling and spacing factor 1, opposite strand 2 ncRNA 359976 DXMgc113 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 113 unknown 50913 Mm.37289 NM_016967 ENSMUSG00000039830 Olig2 AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19 - 16 C3.3|16 52.6 cM oligodendrocyte transcription factor 2 protein-coding 667246 Gm8538 EG667246 - 16|16 B3 RNA guanylyltransferase and 5'-phosphatase pseudogene pseudo 102639849 XR_385039 Gm36063 - - 16 C3.3|16 predicted gene, 36063 ncRNA 70449 Mm.286149 2610209C05Rik 4933406O22Rik - 6|6 RIKEN cDNA 2610209C05 gene unknown 239931 Mm.126860 NM_181490 ENSMUSG00000055811 Cldn17 - - 16|16 C3.3 claudin 17 protein-coding 18033 Mm.256765 NM_008689 ENSMUSG00000028163 Nfkb1 NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105 - 3 G3|3 62.82 cM nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 protein-coding 61393 D5Mit140 - - 5 65.34 cM DNA segment, Chr 5, Massachusetts Institute of Technology 140 unknown 271944 Mm.271006 NM_001136117 ENSMUSG00000091648 C2cd4d Gm659 - 3|3 F2.1 C2 calcium-dependent domain containing 4D protein-coding 723966 NR_029729 ENSMUSG00000065608 Mirlet7c-2 Mirnlet7c-2|let-7c-2 - 15|15 E2 microRNA let7c-2 ncRNA 11811 Mm.281793 NM_009694 ENSMUSG00000040694 Apobec2 Arp1 - 17 C|17 24.02 cM apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2 protein-coding 100039407 Gm2214 - - X|X F2 predicted gene 2214 pseudo 100503012 Gm19503 - - 1|1 64.18 cM cytochrome c oxidase subunit 7B, mitochondrial-like pseudo 75495 Mm.276332 NM_029309 ENSMUSG00000026894 Morn5 1700010A17Rik - 2|2 B MORN repeat containing 5 protein-coding 100043375 Gm14004 - - 2|2 F1 predicted gene 14004 protein-coding 269401 Mm.386888 NM_001164597 ENSMUSG00000000823 Zfp512b Gm632|Znf512b - 2|2 H4 zinc finger protein 512B protein-coding 100415898 Gm20945 - - 8 A2|8 antigenic determinant of rec-A protein pseudogene pseudo 22637 Mm.8038 NM_009539 ENSMUSG00000026117 Zap70 Srk|ZAP-70|mrtle|mur - 1 B|1 15.41 cM zeta-chain (TCR) associated protein kinase protein-coding 100503631 Gm19805 - - 13|13 13.47 cM predicted gene, 19805 ncRNA 665779 Gm7783 EG665779 - 6|6 B2.1 ribosomal protein L7A pseudogene pseudo 74434 Mm.25514 NM_028937 ENSMUSG00000027794 Sohlh2 4933406N12Rik|AI413378|Sosf2 - 3|3 C spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding 102637494 XM_017313190 Gm34287 - - 1 H5|1 predicted gene, 34287 pseudo 545662 Mm.331735 NM_001033790 ENSMUSG00000035201 B020004J07Rik - - 4|4 C6 RIKEN cDNA B020004J07 gene protein-coding 100035005 Orq2 - - - ovulation rate QTL 2 unknown 15370 Mm.119 NM_010444 ENSMUSG00000023034 Nr4a1 GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77 - 15|15 F1 nuclear receptor subfamily 4, group A, member 1 protein-coding 100504292 XM_003085299 Gm20153 - - X F3|X 68.46 cM predicted gene, 20153 protein-coding 80694 Del(7)Tyr-p 112K|Del(7)Tyr 112K-p|Del(7)Tyr112K-p - - deletion, Chr 7, Tyr c-112K, proximal other 24135 Mm.27575 NM_013844 ENSMUSG00000058291 Zfp68 KRAB3|KRAZ2|Zfp70|mszf22|mszf49 - 5 G2|5 77.1 cM zinc finger protein 68 protein-coding 61936 D5Mit375 - - 5 80.32 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 375 unknown 100503962 Mm.216842 NR_037988 ENSMUSG00000102548 Gm16701 - - 1 H2.3|1 74.35 cM predicted gene, 16701 ncRNA 102638831 XR_382159 Gm35302 - - 13 A3.2|13 predicted gene, 35302 ncRNA 105244860 XR_869342 Gm40393 - - 6 E1|6 predicted gene, 40393 ncRNA 22413 Mm.33653 NM_023653 ENSMUSG00000010797 Wnt2 2610510E18Rik|Int1l1|Irp|Mirp|Wnt-2|Wnt2a - 6 A2|6 8.08 cM wingless-type MMTV integration site family, member 2 protein-coding 100861495 NR_046148 ENSMUSG00000095749 n-R5s141 Rn5s24 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 141 rRNA 102636427 Gm33492 - - 13|13 predicted gene, 33492 ncRNA 97127 C76798 - - - expressed sequence C76798 protein-coding 114337 Adip1 - - 1 6.27 cM adiposity 1 unknown 402768 Mm.186281 B230209G03Rik - - 2|2 RIKEN cDNA B230209G03 gene protein-coding 105242833 XR_880088 Gm38934 - - 11 C|11 predicted gene, 38934 ncRNA 257924 Mm.261800 NR_033620 ENSMUSG00000111190 Olfr947-ps1 MOR171-43 - 9|9 A5.1 olfactory receptor 947, pseudogene 1 pseudo 109280064 LOC109280064 Mm628 - - VISTA enhancer mm628 biological-region 105246878 XR_880069 Gm42084 - - 11 B5|11 predicted gene, 42084 ncRNA 70981 Mm.314026 NM_027635 ENSMUSG00000026774 4931423N10Rik - - 2|2 A3 RIKEN cDNA 4931423N10 gene protein-coding 27402 Mm.315011 NM_175094 ENSMUSG00000010914 Pdhx AI481367|E3bp|Pdx1 - 2|2 E2 pyruvate dehydrogenase complex, component X protein-coding 382014 Mm.260360 NM_001164679 ENSMUSG00000034863 Ano8 BC053460|Tmem16h - 8|8 B3.3 anoctamin 8 protein-coding 100038583 Mm.220765 Gm10632 - - - predicted gene 10632 unknown 665385 Gm7613 EG665385 - 9 B|9 predicted gene 7613 pseudo 98064 C78888 - - - expressed sequence C78888 protein-coding 258704 Mm.451658 NM_146709 ENSMUSG00000054406 Olfr411 MOR255-3 - 11|11 B5 olfactory receptor 411 protein-coding 59010 Mm.28986 NM_021507 ENSMUSG00000005803 Sqor 0610039J17Rik|4930557M22Rik|Sqrdl - 2|2 E5 sulfide quinone oxidoreductase protein-coding 12266 Mm.19131 NM_009778 ENSMUSG00000024164 C3 AI255234|ASP|HSE-MSF|Plp - 17 D|17 29.72 cM complement component 3 protein-coding 73603 Mm.472883 NM_001271575 ENSMUSG00000017720 Trp53tg5 1700126L10Rik - 2|2 H3 transformation related protein 53 target 5 protein-coding 331493 Mm.249319 NM_001033541 ENSMUSG00000073010 Gm5127 B130007I08|EG331493 - X|X D predicted gene 5127 protein-coding 100502621 Gm19290 - - 14 A2|14 7.08 cM NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-like pseudo 105244734 XR_868382 Gm40291 - - 5 B3|5 predicted gene, 40291 ncRNA 112376 Sle1b - - 1 75.1 cM systematic lupus erythematosus susceptibility 1b unknown 545987 Gm5900 EG545987 - 7|7 E3 MAPK scaffold protein 1 pseudogene pseudo 71897 Mm.41381 NM_027990 ENSMUSG00000026765 Lypd6b 2310010M24Rik|AW049525 - 2|2 C1.1 LY6/PLAUR domain containing 6B protein-coding 100503855 Mm.482252 Gm19929 - - 12 E|12 49.94 cM predicted gene, 19929 unknown 16650 Mm.202358 NM_008468 ENSMUSG00000003731 Kpna6 IPOA7|Kpna5|NPI-2 - 4|4 D2.2 karyopherin (importin) alpha 6 protein-coding 108169168 XR_001785361 Gm46975 - - 6 F2|6 predicted gene, 46975 ncRNA 77704 Mm.159974 NM_029959 ENSMUSG00000023210 Lcn9 9230102I19Rik - 2|2 A3 lipocalin 9 protein-coding 53150 256f23-T7 - - - DNA segment, 256f23-T7 unknown 102639372 Gm35702 - - 5 A1|5 predicted gene, 35702 pseudo 320606 Mm.439072 NR_040281 ENSMUSG00000089759 3632454L22Rik - - X|X E3-F1 RIKEN cDNA 3632454L22 gene ncRNA 110120430 LOC110120430 - - - VISTA enhancer mm1064 biological-region 105246190 XR_876388 Gm41523 - - 17 A1|17 predicted gene, 41523 ncRNA 102640967 XR_385051 Gm36905 - - 16 C4|16 predicted gene, 36905 ncRNA 109279955 LOC109279955 Mm419 - - VISTA enhancer mm419 biological-region 76798 Mm.444322 NR_015595 ENSMUSG00000086219 Srrm4os 2410137F16Rik - 5|5 F serine/arginine repetitive matrix 4, opposite strand ncRNA 667788 Gm8813 EG667788 - 3 F1|3 high mobility group box 3 pseudogene pseudo 105246835 Gm42057 - - 19|19 predicted gene, 42057 ncRNA 60852 D5Mit75 - - 5 19.14 cM DNA segment, Chr 5, Massachusetts Institute of Technology 75 unknown 668156 Gm9009 EG668156 - X C3|X predicted pseudogene 9009 pseudo 100503166 Mm.443304 NR_045300 ENSMUSG00000085637 1700048M11Rik Gm15980 - 16|16 C4 RIKEN cDNA 1700048M11 gene ncRNA 102632399 Gm30483 - - 7|7 predicted gene, 30483 ncRNA 18365 Mm.377106 NM_013616 ENSMUSG00000110259 Olfr65 5'[b]3|5'beta3|MOR1-1|MOR1-2|ORL670|Olfr64 - 7|7 E3 olfactory receptor 65 protein-coding 16344 Eif3s6-ps3 Int6-ps3 - 17|17 A2 eukaryotic translation initiation factor 3, subunit 6, pseudogene 3 pseudo 105245121 XR_871526 Gm40615 - - 10 A4|10 predicted gene, 40615 ncRNA 330602 NM_183313 Gm5115 D930018N13|EG330602 - 7 E2|7 predicted gene 5115 protein-coding 110120506 LOC110120506 - - - VISTA enhancer mm1509 biological-region 108260 Gapdh-ps10 Gapd-ps10|domes18 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 10 pseudo 330369 Mm.38777 NM_001001160 ENSMUSG00000047013 Fbxo41 9630017H13|D6Ertd538e - 6 C3|6 37.48 cM F-box protein 41 protein-coding 105244696 XR_868179 ENSMUSG00000085961 Gm15904 - - 4 D2.2|4 62.5 cM predicted gene 15904 ncRNA 233544 Mm.234577 A630091E08Rik - - 7|7 E2 RIKEN cDNA A630091E08 gene unknown 105847 Mm.34511 NM_178919 ENSMUSG00000022614 Lmf2 AI451006|Tmem112b|Tmem153 - 15|15 E3 lipase maturation factor 2 protein-coding 100039225 Mm.404278 Gm10322 - - 10|10 B4 predicted gene 10322 unknown 12765 Mm.234466 NM_009909 ENSMUSG00000026180 Cxcr2 CD128|CDw128|Cmkar2|Gpcr16|IL-8Rh|IL-8rb|IL8RA|Il8rb|mIL-8RH - 1 C3|1 38.41 cM chemokine (C-X-C motif) receptor 2 protein-coding 102465210 NR_105818 ENSMUSG00000099030 Mir6394 Gm27929|mmu-mir-6394 - 7|7 E1 microRNA 6394 ncRNA 13716 Mm.271973 NM_007924 ENSMUSG00000070002 Ell Ell1|Men - 8|8 B3.3 elongation factor RNA polymerase II protein-coding 100043354 Gm4383 - - 15 F1|15 high mobility group box 2 pseudogene pseudo 102638508 XR_384452 Gm17057 - - 15 F1|15 56.13 cM predicted gene 17057 ncRNA 102640266 XR_382634 Gm36377 - - 13 C1|13 predicted gene, 36377 ncRNA 22222 Mm.389330 NM_009461 ENSMUSG00000027272 Ubr1 AI504731 - 2 E5|2 60.37 cM ubiquitin protein ligase E3 component n-recognin 1 protein-coding 61381 D5Mit102 - - 5 90.0 cM DNA segment, Chr 5, Massachusetts Institute of Technology 102 unknown 20445 Mm.436887 NM_011371 ENSMUSG00000009588 St6galnac1 Siat7a - 11|11 E2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding 74420 Mm.404497 4933406P04Rik - - 10|10 A3 RIKEN cDNA 4933406P04 gene unknown 105246240 Gm41552 - - 17|17 predicted gene, 41552 ncRNA 632126 Mm.484958 NM_030746 ENSMUSG00000058435 Btnl4 Btn3a3|EG632126|NG11 - 17 B1|17 18.06 cM butyrophilin-like 4 protein-coding 19221 Mm.24807 NM_011197 ENSMUSG00000027864 Ptgfrn 4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45 - 3|3 F2.2 prostaglandin F2 receptor negative regulator protein-coding 108557 Iapls3-25 - - - intracisternal A particle, lymphocyte specific 3-25 other 111715 Mpmv28 Mpmv-28 - - modified polytropic murine leukemia virus 28 other 78402 2900037B21Rik - - 7|7 RIKEN cDNA 2900037B21 gene protein-coding 96997 C80279 - - - expressed sequence C80279 protein-coding 225326 Mm.194127 NM_181414 ENSMUSG00000033628 Pik3c3 5330434F23Rik|Vps34 - 18|18 B1 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 102638602 Gm35128 - - 2|2 predicted gene, 35128 ncRNA 111069 Odc-rs5 BRS-5|Odc-5 - - ornithine decarboxylase, related sequence 5 pseudo 100038465 Gm10773 - - - predicted gene 10773 protein-coding 68923 Mm.122698 1190001L17Rik AI607394 - - RIKEN cDNA 1190001L17 gene protein-coding 102632075 XR_383076 Gm30244 - - 14 A1|14 predicted gene, 30244 ncRNA 100034889 Vmbic4 - - 7 17.4 cM ventral midbrain iron content 4 unknown 62066 D10Mit41 - - 10 48.79 cM DNA segment, Chr 10, Massachusetts Institute of Technology 41 unknown 102632491 Mm.406607 XR_377166 Gm30550 - - 5 G2|5 predicted gene, 30550 ncRNA 112138 Bgeq10 - - 11 82.96 cM body growth early QTL 10 unknown 217536 XR_001538 Gm1818 - - 12|12 B3 predicted gene 1818 unknown 76938 Mm.182769 NM_152824 ENSMUSG00000037197 Rbm17 2700027J02Rik - 2|2 A1 RNA binding motif protein 17 protein-coding 16305 In(8)16Rk-d In(8)16Rk|In16Rk - - inversion, Chr 8, Roderick 16, distal other 100462736 Gm19243 - - 3 G1|3 50.57 cM ribosomal protein S27 pseudogene pseudo 52587 D13Ertd476e - - 13 50.66 cM DNA segment, Chr 13, ERATO Doi 476, expressed unknown 61216 D1Mit194 - - 1 63.28 cM DNA segment, Chr 1, Massachusetts Institute of Technology 194 unknown 69917 Mm.46614 NM_027257 ENSMUSG00000025374 Nabp2 2610036N15Rik|Obfc2b|SSB1 - 10|10 D3 nucleic acid binding protein 2 protein-coding 75553 Mm.25549 NM_029334 ENSMUSG00000021012 Zc3h14 1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748 - 12|12 E zinc finger CCCH type containing 14 protein-coding 16114 Mm.333124 Igk-V28 AV061724|Igk-Ef1|Igk-Trp|Igk-VSer - 6 C1|6 immunoglobulin kappa chain variable 28 (V28) other 108607 Iap3rc16 - - - intracisternal A-type particle, U3 region, SINE repeat c-16 other 108168977 XR_001784437 Gm46869 - - 4 D2.2|4 predicted gene, 46869 ncRNA 102639925 XR_001779769 Gm36123 - - 10 B3|10 predicted gene, 36123 ncRNA 667638 Gm11231 - - 4|4 C2 predicted gene 11231 pseudo 102640243 XR_389333 Gm36357 - - 5 E2|5 predicted gene, 36357 ncRNA 78741 Mm.445822 9530086O07Rik - - 6|6 RIKEN cDNA 9530086O07 gene protein-coding 258683 Mm.377637 NM_146688 ENSMUSG00000067519 Olfr262 MOR214-1|MOR214-9 - 19|19 A olfactory receptor 262 protein-coding 105247251 Gm42381 - - 7 A1|7 predicted gene, 42381 pseudo 100034811 Lmr12 - - 16 30.45 cM leishmaniasis resistance 12 unknown 102636006 XR_377910 Gm33201 Gm44290 - 6 D3|6 predicted gene, 33201 ncRNA 93711 Mm.247203 NM_033586 ENSMUSG00000104346 Pcdhga3 - - 18|18 B3 protocadherin gamma subfamily A, 3 protein-coding 15081 Mm.18516 NM_008211 ENSMUSG00000016559 H3f3b 9430068D06Rik|H3.3B - 11|11 E2 H3 histone, family 3B protein-coding 13108 Mm.102312 NM_013809 ENSMUSG00000049685 Cyp2g1 - - 7|7 A3 cytochrome P450, family 2, subfamily g, polypeptide 1 protein-coding 97241 C79870 - - - expressed sequence C79870 unknown 100042597 Gm3919 - - 16|16 A1 MRT4, mRNA turnover 4 pseudogene pseudo 105245017 XR_870895 Gm40531 - - 9 D|9 predicted gene, 40531 ncRNA 104012 Axd - - - axial defects unknown 13859 Mm.288894 NM_007944 ENSMUSG00000006276 Eps15l1 9830147J04Rik|AI593686|Eps15-rs|Eps15R - 8|8 B3.3 epidermal growth factor receptor pathway substrate 15-like 1 protein-coding 102639781 XR_376471 Gm36012 - - 4 C6|4 predicted gene, 36012 ncRNA 71995 Mm.22 NM_028045 ENSMUSG00000037482 Erv3 1600014E20Rik|AA389086|AI426069|AI448024|D19349 - 2|2 F1 endogenous retroviral sequence 3 protein-coding 70380 Mm.491083 NM_027409 ENSMUSG00000023074 Mospd1 1810018L05Rik - X|X A5 motile sperm domain containing 1 protein-coding 60991 D1Mit242 - - 1 1.65 cM DNA segment, Chr 1, Massachusetts Institute of Technology 242 unknown 16001 Mm.275742 NM_010513 ENSMUSG00000005533 Igf1r A330103N21Rik|CD221|D930020L01|IGF-1R|hyft - 7 C|7 37.27 cM insulin-like growth factor I receptor protein-coding 12624 Mm.453061 Cet1 - - 16|16 cerebellum expressed transcript 1 unknown 14050 Mm.227733 NM_010166 ENSMUSG00000028886 Eya3 AI844637 - 4 D2.3|4 65.68 cM EYA transcriptional coactivator and phosphatase 3 protein-coding 100504221 Mm.246778 NM_177849 ENSMUSG00000044083 Efcab8 A630008I04|EG329541 - 2|2 H1 EF-hand calcium binding domain 8 ncRNA 667031 Vmn2r-ps5 EG667031|Vmn2-ps5 - 3 E1|3 vomeronasal 2, receptor, pseudogene 5 pseudo 216150 Mm.21981 NM_177613 ENSMUSG00000020307 Cdc34 AI327276|E2-CDC34|UBE2R1 - 10 C1|10 39.72 cM cell division cycle 34 protein-coding 108168549 XM_017318741 LOC108168549 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 110293 Aldh5 Ahd-6|Ahd6 - - aldehyde dehydrogenase 5, testis protein-coding 102631653 LOC102631653 - - 17 A3.3 40S ribosomal protein S13 pseudogene pseudo 22351 Mm.83817 NM_011700 ENSMUSG00000038775 Vill Villp - 9|9 F3 villin-like protein-coding 22668 Mm.256422 NM_011750 ENSMUSG00000024949 Sf1 BBP|MZFM|WBP4|Zfp162 - 19|19 A splicing factor 1 protein-coding 102635673 Gm26569 - - 16|16 predicted gene, 26569 ncRNA 71588 9130009M17Rik - - 19|19 RIKEN cDNA 9130009M17 gene protein-coding 666585 Gm8177 - - 3|3 D La ribonucleoprotein domain family, member 4 pseudogene pseudo 545276 Mm.447174 NM_001024717 ENSMUSG00000047658 Gal3st3 - - 19|19 A galactose-3-O-sulfotransferase 3 protein-coding 102636540 XR_382916 ENSMUSG00000086861 Gm15325 - - 13 D2.2|13 63.62 cM predicted gene 15325 ncRNA 100035233 Spnw4 - - - spleen weight 4 unknown 105242462 LOC105242462 - - - olfactory receptor 4F3/4F16/4F29 protein-coding 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 - 2|2 E1 leucine rich repeat containing 4C protein-coding 102632643 XR_384357 Gm30665 - - 15 E3|15 predicted gene, 30665 ncRNA 105243608 LOC105243608 - - Y A1 spermiogenesis specific transcript on the Y 1 pseudogene pseudo 15395 Mm.5 NM_008263 ENSMUSG00000000938 Hoxa10 Hox-1.8|Hoxa-10 - 6 B3|6 25.4 cM homeobox A10 protein-coding 100035433 Ctrq3 Ctrq-3 - - C. trachomatis resistance QTL 3 unknown 15352 Gm4739 EG15352 - 10|10 A4 high mobility group box 2 pseudogene pseudo 100039375 Gm15470 - - 7|7 B3 ornithine decarboxylase, structural 1 pseudogene pseudo 62635 D14Mit130 - - 14 25.63 cM DNA segment, Chr 14, Massachusetts Institute of Technology 130 unknown 98162 C85546 - - - expressed sequence C85546 protein-coding 667688 Rpl17-ps2 Gm8763 - 12|12 E ribosomal protein L17, pseudogene 2 pseudo 100042557 Gm10086 - - 5|5 F ribosomal protein L34 pseudogene pseudo 100504639 Mm.417233 Gm20325 - - 2|2 57.1 cM predicted gene, 20325 unknown 102638426 XR_383477 Gm34997 - - 14 D1|14 predicted gene, 34997 ncRNA 100041256 Mm.462976 NM_001160142 ENSMUSG00000096898 Gm20867 - - Y|Y D predicted gene, 20867 protein-coding 66446 Mm.41562 NM_001081188 ENSMUSG00000025785 Exosc7 2610002K22Rik|AV212732|mKIAA0116 - 9|9 F4 exosome component 7 protein-coding 106967 Mm.444419 4732423E21Rik AL024288 - - RIKEN cDNA 4732423E21 gene protein-coding 18753 Mm.2314 NM_011103 ENSMUSG00000021948 Prkcd AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd - 14 B|14 18.82 cM protein kinase C, delta protein-coding 666440 Gm8106 EG666440 - 9|9 A4 N(alpha)-acetyltransferase 20, NatB catalytic subunit pseudogene pseudo 102637520 XR_382522 ENSMUSG00000114208 Gm34307 - - 13 B1|13 predicted gene, 34307 ncRNA 667901 Gm8871 EG667901 - 5 A1|5 predicted pseudogene 8871 pseudo 100504643 Mm.411767 Gm20326 - - 9|9 62.46 cM predicted gene, 20326 unknown 105244131 Gm13428 - - 2|2 24.19 cM predicted gene 13428 pseudo 108167474 Gm45596 - - 7 A1|7 protein max pseudogene pseudo 102640880 XR_392571 ENSMUSG00000101961 Gm28220 CH36-344B19.5 - Y E|Y predicted gene 28220 ncRNA 667193 Mm.296327 Gm8505 EG667193 - 4|4 D2.2 predicted gene 8505 unknown 545124 XM_006521630 Tdg-ps EG545124|Gm5806 - 15|15 E1 thymine DNA glycosylase, pseudogene protein-coding 105244339 Gm39968 - - 2|2 predicted gene, 39968 ncRNA 105246392 XR_877287 Gm41684 - - 18 B1|18 predicted gene, 41684 ncRNA 102638465 Mm.410829 XR_880464 4930405H06Rik - - 5|5 E4 RIKEN cDNA 4930405H06 gene ncRNA 213783 Mm.150831 NM_001033253 ENSMUSG00000040624 Plekhg1 D10Ertd733e|Gm521|mKIAA1209 - 10|10 A1 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 protein-coding 109280022 LOC109280022 Mm173 - - VISTA enhancer mm173 biological-region 240121 Mm.270660 NM_183178 ENSMUSG00000011589 Fsd1 - - 17|17 D fibronectin type 3 and SPRY domain-containing protein protein-coding 101055735 Gm21815 - - Y|Y predicted gene, 21815 protein-coding 102634277 Gm31900 - - 3|3 predicted gene, 31900 ncRNA 100417341 Gm18544 - - 19|19 A crumbs homolog 1 pseudogene pseudo 102638320 XR_389314 Gm34912 - - 5 D|5 predicted gene, 34912 ncRNA 102631912 XR_872943 LOC102631912 - - 12 E uncharacterized LOC102631912 ncRNA 102632453 XR_387388 Gm29630 - - 1 E4|1 predicted gene 29630 ncRNA 546981 Mm.469835 NM_001102578 ENSMUSG00000090436 Vmn2r75 EG546981 - 7|7 D3 vomeronasal 2, receptor 75 protein-coding 100034767 Gvhd4 - - 11 42.51 cM graft-versus host disease 4 unknown 380753 Mm.41540 NM_028139 ENSMUSG00000020564 Atxn7l1 2810423G08Rik|Atxn7l4 - 12|12 A3 ataxin 7-like 1 protein-coding 102636590 Mm.45825 NR_155301 AV205837 - - 16|16 B2 expressed sequence AV205837 ncRNA 100503769 Gm13506 - - 2 B|2 24.49 cM NEDD4-binding protein 1-like pseudo 56088 Mm.396248 NM_019537 ENSMUSG00000022913 Psmg1 AW552102|Dscr2 - 16|16 C4 proteasome (prosome, macropain) assembly chaperone 1 protein-coding 666272 Mm.309128 NR_152173 ENSMUSG00000113050 Gm8016 EG666272 - 13|13 B3 predicted gene 8016 ncRNA 436522 Mm.443385 NM_001038996 ENSMUSG00000071521 Try10 - - 6|6 B1 trypsin 10 protein-coding 100217424 NR_028524 ENSMUSG00000065680 Snord38a MBII-329 - 4 D1|4 small nucleolar RNA, C/D box 38A snoRNA 272031 Mm.299460 NM_178756 ENSMUSG00000063446 Plppr1 E130309F12Rik|Lppr1|PRG-3|mKIAA4247 - 4|4 B1 phospholipid phosphatase related 1 protein-coding 100035278 Chlq8 - - 17 12.53 cM circulating hormone level QTL 8 unknown 625353 Mm.469824 NM_001105067 ENSMUSG00000096399 Vmn2r35 EG625353 - 7|7 A1 vomeronasal 2, receptor 35 protein-coding 105243601 XR_872827 Gm39473 - - 12 C3|12 predicted gene, 39473 ncRNA 105244062 XR_865890 Gm39742 - - 1 H6|1 predicted gene, 39742 ncRNA 16413 Mm.273333 NM_008403 ENSMUSG00000062352 Itgb1bp1 AI449260|AU019480|Icap1 - 12|12 A1.3 integrin beta 1 binding protein 1 protein-coding 665839 Gm7816 EG665839 - 5|5 B3 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene pseudo 16722 l17Wis4 l(17)-4Wis - - lethal, Chr 17, U Wisconsin 4 unknown 641385 Mm.417772 2810430I11Rik - - - RIKEN cDNA 2810430I11 gene protein-coding 677884 Mm.331630 NM_001304544 ENSMUSG00000089945 Pakap AF064781|Gm20459|Palm2-Akap2|Palm2Akap2|Palm2akap2 - 4 B3|4 paralemmin A kinase anchor protein protein-coding 109374 Bw1 - - - body weight QTL 1 unknown 384817 Mm.435499 4930448N21Rik - - 8|8 B1.1 RIKEN cDNA 4930448N21 gene protein-coding 61518 D8Mit148 - - 8 72.17 cM DNA segment, Chr 8, Massachusetts Institute of Technology 148 unknown 382471 Gm5181 EG382471 - 10|10 D3 predicted gene 5181 pseudo 76997 Mm.417840 1700123C12Rik - - 8|8 RIKEN cDNA 1700123C12 gene ncRNA 211666 Mm.24679 NM_174995 ENSMUSG00000074604 Mgst2 GST2|MGST-II - 3|3 C microsomal glutathione S-transferase 2 protein-coding 102634207 XR_379710 Gm31847 - - 9 E3.3|9 predicted gene, 31847 ncRNA 108168190 LOC108168190 - - 14 C1 non-secretory ribonuclease-like pseudo 70882 Mm.276696 NM_001081083 ENSMUSG00000037683 Armc3 4921513G22Rik - 2|2 A3 armadillo repeat containing 3 protein-coding 69544 Mm.37802 NM_027113 ENSMUSG00000034379 Wdr5b 2310009C03Rik|AI606931 - 16|16 B3 WD repeat domain 5B protein-coding 105244596 XR_867792 Gm40186 - - 3 H4|3 predicted gene, 40186 ncRNA 13812 eob - - - eyelids open at birth unknown 387168 NR_029560 ENSMUSG00000065495 Mir150 Mirn150|mir-150|mmu-mir-150 - 7|7 B3 microRNA 150 ncRNA 105244194 XR_866416 Gm39845 - - 2 C3|2 predicted gene, 39845 ncRNA 53789 D0Tu44 D17Tu44 - - DNA segment, Tubingen 44 unknown 100504728 Mm.413174 NR_126427 Gm13985 - - 2 E5|2 59.29 cM predicted gene 13985 ncRNA 18630 Mm.3086 NM_008821 ENSMUSG00000035395 Pet2 PC231|PC326|Pex3 - X|X C1 plasmacytoma expressed transcript 2 protein-coding 111739 Mpmv15 Mpmv-15 - - modified polytropic murine leukemia virus 15 other 494497 Mm.332472 NM_001305431 BC037156 FDC-SP - 5 E1|5 cDNA sequence BC037156 protein-coding 102637750 Mm.99741 XR_380284 Gm34481 - - 10 B2|10 predicted gene, 34481 ncRNA 492982 Kidq2 - - - kidney weight QTL 2 unknown 100418153 Gm19039 - - 6|6 E3 D-tyrosyl-tRNA deacylase 1 homolog pseudogene pseudo 16517 Mm.30176 NM_010604 ENSMUSG00000051497 Kcnj16 6430410F18Rik|AI132396|Kir5.1 - 11 E2|11 75.01 cM potassium inwardly-rectifying channel, subfamily J, member 16 protein-coding 13201 dds - - - dorsal dark stripe unknown 100503586 Gm11702 - - 11|11 80.91 cM predicted gene 11702 ncRNA 102634892 XR_375686 Gm32367 - - 3 D|3 predicted gene, 32367 ncRNA 100862105 Gm14601 - - X|X 30.06 cM predicted gene 14601 pseudo 492975 Hrtpq1 Htrpq1 - - heart weight percentage QTL 1 unknown 102465181 NR_105771 ENSMUSG00000098851 Mir6353 Gm27391|mmu-mir-6353 - 1|1 C5 microRNA 6353 ncRNA 493099 Lipq3 - - 15 41.96 cM lipoprotein QTL 3 unknown 17434 Mm.19027 NM_013826 ENSMUSG00000015536 Mocs2 AI415403 - 13|13 D2.2 molybdenum cofactor synthesis 2 protein-coding 61926 D5Mit354 - - 5 20.21 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 354 unknown 102631497 Gm29820 - - 11|11 predicted gene, 29820 ncRNA 71046 Mm.280888 NM_027655 ENSMUSG00000013158 4933405L10Rik - - 8 D3|8 RIKEN cDNA 4933405L10 gene protein-coding 102637867 Gm34569 - - 2|2 predicted gene, 34569 ncRNA 668011 Gm8924 EG668011 - 5 A1|5 anaphase-promoting complex subunit 5 pseudogene pseudo 67586 Mm.282029 NM_026257 ENSMUSG00000012126 Ubxn11 4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5 - 4 D3|4 66.5 cM UBX domain protein 11 protein-coding 100416805 Gm18266 - - 8|8 A2 testis expressed gene 24 pseudogene pseudo 78029 Mm.243858 XR_383411 ENSMUSG00000115719 4930538L07Rik - - 14|14 C1 RIKEN cDNA 4930538L07 gene ncRNA 665270 Mm.160067 NM_030072 ENSMUSG00000029134 Plb1 4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606 - 5|5 B1 phospholipase B1 protein-coding 19277 Mm.186361 NM_011216 ENSMUSG00000030223 Ptpro D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O - 6|6 G1 protein tyrosine phosphatase, receptor type, O protein-coding 56249 Mm.215110 NM_027493 ENSMUSG00000015971 Actr8 5730542K05Rik|ARP8 - 14|14 B ARP8 actin-related protein 8 protein-coding 77570 3930401B19Rik - - - RIKEN cDNA 3930401B19 gene protein-coding 108167592 XR_001778769 LOC108167592 - - 8 A3 uncharacterized LOC108167592 ncRNA 432798 Gm5453 EG432798 - 13|13 D1 predicted gene 5453 pseudo 21121 T(2;15)15Ad T15Ad - - reciprocal translocation, Chr 2 and 15, Adler 15 other 105242643 XR_869031 Gm38801 - - 6 B2.3|6 predicted gene, 38801 ncRNA 666672 Gm8228 EG666672 - 9|9 E3.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 pseudogene pseudo 100124548 Vmn2r-ps6 - - 3|3 E1 vomeronasal 2, receptor, pseudogene 6 pseudo 11643 Mm.1498 NM_009651 ENSMUSG00000050089 Akap4 AKAP-4|AKAP82|Fsc1|PRKA4|mAKAP82|p82 - X A1.1|X 3.17 cM A kinase (PRKA) anchor protein 4 protein-coding 75547 Mm.216107 NM_029332 ENSMUSG00000066406 Akap13 1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC - 7|7 D1 A kinase (PRKA) anchor protein 13 protein-coding 102466647 NR_105840 ENSMUSG00000098887 Mir6413 Gm27432|mmu-mir-6413 - 10|10 A3 microRNA 6413 ncRNA 111650 Igl-2 - - - immunoglobulin lambda chain, cluster 2 other 112060 Cliff - - 15 1.84 cM cliff drop aversion unknown 100504581 Gm17275 - - 1|1 84.46 cM predicted gene, 17275 ncRNA 114623 Mobq7 Mob7 - 2 38.54 cM multigenic obesity QTL 7 unknown 13451 Is(13;1)4H Dp(1)13H|Dp13H - - insertion, Chr 13 and 1, Harwell 4 other 404436 Olfr852-ps1 - - 9|9 A3 olfactory receptor 852, pseudogene 1 pseudo 51873 Mm.441738 D2Ertd127e D130071G01Rik - 2 57.02 cM DNA segment, Chr 2, ERATO Doi 127, expressed unknown 102637703 XR_378642 Gm34445 - - 7 F5|7 predicted gene, 34445 ncRNA 53726 DXHXS32 DXPas7|DXS32h - - DNA segment, Chr X, human DXS32 unknown 628185 Mm.390947 NM_001104575 ENSMUSG00000094921 Vmn2r112 EG628185|V2rp1 - 17|17 A3.3 vomeronasal 2, receptor 112 protein-coding 640234 Gm7289 EG640234 - 18|18 E4 nucleophosmin 1 pseudogene pseudo 108167462 XR_001778299 Gm46002 - - 7 F3|7 predicted gene, 46002 ncRNA 100036060 Scc13 - - 6 28.17 cM colon tumor susceptibility 13 unknown 102641037 XM_006536367 LOC102641037 - - - Y-linked testis-specific protein 1-like protein-coding 215384 Mm.292276 NM_175444 ENSMUSG00000047730 Fcgbp A430096B05Rik - 7|7 A3 Fc fragment of IgG binding protein protein-coding 329307 Mm.436476 NM_183218 ENSMUSG00000054135 A430110L20Rik - - 1|1 H4 RIKEN cDNA A430110L20 gene ncRNA 102633393 XR_001780271 Gm31228 - - 11 B5|11 predicted gene, 31228 ncRNA 102639100 Gm35494 - - 13|13 predicted gene, 35494 ncRNA 100862413 XM_003688743 LOC100862413 - - - zinc finger and SCAN domain containing protein 4F protein-coding 105245973 Mm.447617 Gm16308 - - 15|15 32.31 cM predicted gene 16308 ncRNA 106046 Mm.442436 AW413774 - - - expressed sequence AW413774 protein-coding 61019 D6Mit158 - - 6 11.91 cM DNA segment, Chr 6, Massachusetts Institute of Technology 158 unknown 73640 Mm.65506 1700113B19Rik - - 1|1 RIKEN cDNA 1700113B19 gene protein-coding 112002 Hlq3 - - - heat loss QTL 3 unknown 62708 D17Mit151 - - 17 34.32 cM DNA segment, Chr 17, Massachusetts Institute of Technology 151 unknown 68010 Mm.284863 NM_026505 ENSMUSG00000024232 Bambi 2610003H06Rik - 18|18 A1 BMP and activin membrane-bound inhibitor protein-coding 97703 Mm.218233 C78226 - - - expressed sequence C78226 unknown 100035599 W6q14 - - - weight 6 weeks QTL 14 unknown 62697 D17Mit123 - - 17 60.67 cM DNA segment, Chr 17, Massachusetts Institute of Technology 123 unknown 12723 Mm.386757 NM_013491 ENSMUSG00000029862 Clcn1 Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355 - 6 B2.1|6 20.57 cM chloride channel, voltage-sensitive 1 protein-coding 52281 D9Ertd382e - - - DNA segment, Chr 9, ERATO Doi 382, expressed unknown 100043299 Gm10054 - - 12 A1.1|12 predicted gene 10054 pseudo 105245246 XR_871908 Gm40725 - - 10 C1|10 predicted gene, 40725 ncRNA 100124362 Traj27 Gm16817 - 14|14 C2 T cell receptor alpha joining 27 other 544705 Gm5778 EG544705 - 10|10 B5.3 heterogeneous nuclear ribonucleoprotein A2/B1 pseudogene pseudo 666793 Gm8292 EG666793 - 1|1 C1.2 predicted gene 8292 pseudo 93848 D6Jor1 - - - DNA segment, Chr 6, Barbara Jordan 1 unknown 100043506 Gm11191 - - 11|11 B5 predicted gene 11191 pseudo 102631647 Mm.438083 XR_373197 Gm16041 - - 1 A1|1 1.82 cM predicted gene 16041 ncRNA 61001 D3Mit176 - - 3 7.58 cM DNA segment, Chr 3, Massachusetts Institute of Technology 176 unknown 75998 Mm.448658 5033425G24Rik - - 12|12 C3 RIKEN cDNA 5033425G24 gene protein-coding 107988026 Mid1-ps1 Gm21857 - Y E|Y midline 1, pseudogene 1 pseudo 61768 D3Mit282 - - 3 39.01 cM DNA segment, Chr 3, Massachusetts Institute of Technology 282 unknown 99100 Mm.330545 NM_001081091 ENSMUSG00000068394 Cep152 AI851464|mKIAA0912 - 2|2 F1 centrosomal protein 152 protein-coding 665768 Gm7778 EG665768 - 14|14 B predicted gene 7778 pseudo 723938 NR_030274 ENSMUSG00000076399 Mir450-2 Mirn450-2|mir-450a-2 - X|X A5 microRNA 450-2 ncRNA 16145 Mm.33902 NM_018738 ENSMUSG00000078853 Igtp AW558444|Irgm3 - 11 B1.3|11 36.01 cM interferon gamma induced GTPase protein-coding 102641916 LOC102641916 - - - protein-lysine methyltransferase METTL21D protein-coding 73247 Mm.426558 NM_028479 ENSMUSG00000027569 Mrgbp 1600027N09Rik|AW060503|C80444 - 2|2 H4 MRG/MORF4L binding protein protein-coding 108169186 Gm43979 - - 6 G1|6 cyclin-dependent kinase 4 pseudogene pseudo 60883 D7Mit64 - - 7 62.7 cM DNA segment, Chr 7, Massachusetts Institute of Technology 64 unknown 107581 Mm.41860 NM_028266 ENSMUSG00000040690 Col16a1 2700007F12Rik|A530052M23Rik|AI838662|CA1F - 4|4 D2.2 collagen, type XVI, alpha 1 protein-coding 103590 AA589486 - - - expressed sequence AA589486 unknown 667435 Igkv17-121 EG667435|Gm8632|bt20 - 6|6 C1 immunoglobulin kappa variable 17-121 other 110120447 LOC110120447 - - - VISTA enhancer mm1452 biological-region 108168020 Gm46369 - - 12 D1|12 40S ribosomal protein S25 pseudogene pseudo 100036331 Bmgr3 - - - bone marrow graft rejection 3 unknown 102636537 XR_387314 Gm33575 - - 1 E2.3|1 predicted gene, 33575 ncRNA 100418243 Gm19096 - - 8|8 A3 discs, large homolog-associated protein 5 pseudogene pseudo 16664 Mm.439898 NM_016958 ENSMUSG00000045545 Krt14 AI626930|CK-14|K14|Krt-1.14|Krt1-14 - 11 63.43 cM|11 D keratin 14 protein-coding 102637095 Gm33994 - - 1|1 predicted gene, 33994 ncRNA 109286558 LOC109286558 - - - enhancer eA upstream of Tbx3 biological-region 360077 D17Jcs10 - - - DNA segment, Chr 17, John C. Schimenti 10 unknown 102634330 Mm.402324 NR_136891 ENSMUSG00000112422 Gm31938 - - 12 A1.1|12 predicted gene, 31938 ncRNA 14681 Mm.251445 NM_010308 ENSMUSG00000031748 Gnao1 AW050213|Galphao|Gnao|alphaO - 8 C5|8 45.94 cM guanine nucleotide binding protein, alpha O protein-coding 545878 Mm.1967 Gm5884 EG545878 - 6|6 F3 target of myb1 homolog pseudogene pseudo 67723 Mm.116284 NR_015524 Cep83os 4932415G12Rik|Ccdc41os1 - 10|10 C2 centrosomal protein 83, opposite strand ncRNA 777687 Ighv5-3 - - 12|12 F1 immunoglobulin heavy variable V5-3 pseudo 102633871 XR_386807 Gm31595 - - 19 D2|19 predicted gene, 31595 ncRNA 61307 D3Mit119 - - 3 22.62 cM DNA segment, Chr 3, Massachusetts Institute of Technology 119 unknown 114618 Pheo - - 15 12.53 cM pheomelanin unknown 13223 Mm.424744 NM_001005418 Defa-rs4 CRS4C-1a|CRS4C1a|Defcr-rs4 - - defensin, alpha,, related sequence 4 protein-coding 17955 Mm.294625 NM_008672 ENSMUSG00000059119 Nap1l4 2810410H14Rik|AI316776|D7Wsu30e|Nap2 - 7 F5|7 88.24 cM nucleosome assembly protein 1-like 4 protein-coding 244713 Mm.67366 NM_172918 ENSMUSG00000057551 Zfp317 4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40 - 9 A3|9 7.35 cM zinc finger protein 317 protein-coding 100035742 Cd8mts2 - - 1 50.84 cM CD8 memory T cell subset 2 unknown 100034775 Tshp17 QTL-TSH16.1 - - tooth shape 17 unknown 100038947 Mm.330924 NM_001173459 ENSMUSG00000074677 LOC100038947 - - 3|3 A1 signal-regulatory protein beta 1-like protein-coding 105244762 XR_868470 Gm40315 - - 5 C3.1|5 predicted gene, 40315 ncRNA 26381 Mm.89989 NM_011935 ENSMUSG00000026610 Esrrg ERR3|Errg|NR3B3|mKIAA0832 - 1|1 H5-H6 estrogen-related receptor gamma protein-coding 628444 Mm.469901 NM_001105056 ENSMUSG00000092032 Vmn2r59 EG628444 - 7|7 B3 vomeronasal 2, receptor 59 protein-coding 19859 NR_027863 ENSMUSG00000098925 Rnu3b2 Rnu3b-2 - 11 C|11 52.11 cM U3B small nuclear RNA 2 snRNA 97796 C78024 - - - expressed sequence C78024 unknown 74504 Mm.294695 NM_178390 ENSMUSG00000037339 Fam53a 2410018C17Rik|5430419M09Rik|Dntnp - 5|5 B1 family with sequence similarity 53, member A protein-coding 67194 Mm.423733 NR_045040 ENSMUSG00000097180 2700038G22Rik - - 5|5 A3 RIKEN cDNA 2700038G22 gene ncRNA 13800 Mm.87759 NM_008680 ENSMUSG00000022995 Enah Mena|NDPP-1|Ndpp1|WBP8 - 1 H5|1 84.93 cM ENAH actin regulator protein-coding 328066 Mm.363856 XR_001780577 LOC328066 C920021A13 - 12|12 A1.3 uncharacterized LOC328066 ncRNA 110815 Stop1-p - - - t-specific sperm-oolemma penetration 1, proximal protein-coding 105245623 Gm22118 - - 13|13 predicted gene, 22118 ncRNA 102639413 XR_001785050 Gm35735 - - 5 G3|5 predicted gene, 35735 ncRNA 13983 Mm.2561 NM_010157 ENSMUSG00000021055 Esr2 ER[b]|ERbeta|Estrb - 12 C3|12 33.52 cM estrogen receptor 2 (beta) protein-coding 61816 D2Mit364 - - 2 14.54 cM DNA segment, Chr 2, Massachusetts Institute of Technology 364 unknown 102638095 XR_386036 Gm34740 - - 18 A1|18 predicted gene, 34740 ncRNA 732532 Gt(pU21)8Imeg Ayu21-8|GtAyu21-8 - - gene trap 8, Institute of Molecular Embryology and Genetics unknown 71229 Mm.258955 4933428P19Rik - - 10|10 B4 RIKEN cDNA 4933428P19 gene unknown 108221 Ifi56-ps2 - - - interferon inducible protein 56, pseudogene 2 pseudo 666853 Gm8325 EG666853 - 3|3 D ubiquitin-conjugating enzyme E2 variant 1 pseudogene pseudo 52992 B6T7 - - - DNA segment, B6T7 unknown 100034913 Trmq4 - - 15 3.82 cM T cell ratio modifier QTL 4 unknown 19880 rol - - - resistance to osmotic lysis unknown 102467611 n-TWcca6 n-Tw6 - 11 B3|11 nuclear encoded tRNA trytophan 6 (anticodon CCA) tRNA 74781 Mm.29432 NM_178398 ENSMUSG00000029578 Wipi2 1110018O08Rik|2510001I10Rik - 5|5 G2 WD repeat domain, phosphoinositide interacting 2 protein-coding 108168867 XR_001783821 Gm46802 - - 3 B|3 predicted gene, 46802 ncRNA 320965 Mm.32025 NR_030700 4831440E17Rik - - 5|5 B1 RIKEN cDNA 4831440E17 gene ncRNA 100312506 Vmn1r-ps60 - - 7|7 A1 vomeronasal 1 receptor, pseudogene 60 pseudo 107570 Anth - - - resistance to Bacillus anthracis protein-coding 16777 Mm.172674 NM_008482 ENSMUSG00000002900 Lamb1 C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1 - 12 A2|12 13.39 cM laminin B1 protein-coding 105243255 Gm39225 - - 8|8 predicted gene, 39225 ncRNA 434352 LOC434352 - - 8|8 E1 uncharacterized LOC434352 unknown 227485 Mm.322070 NM_001081386 ENSMUSG00000047216 Cdh19 - - 1|1 E2.1 cadherin 19, type 2 protein-coding 17970 Mm.270307 NM_010877 ENSMUSG00000026480 Ncf2 NOXA2|Ncf-2|p67phox - 1 G3|1 65.05 cM neutrophil cytosolic factor 2 protein-coding 17388 Mm.217116 NM_008609 ENSMUSG00000031790 Mmp15 AI503551|MT-MMP 2|MT2-MMP - 8 C5|8 47.12 cM matrix metallopeptidase 15 protein-coding 231630 Mm.21926 NM_001010825 ENSMUSG00000053334 Ficd D5Ertd40e|Hype - 5 F|5 55.55 cM FIC domain containing protein-coding 53304 412I12 - - - DNA segment, 412I12 Research Genetics unknown 108169153 XR_001785318 Gm46966 - - 6 D1|6 predicted gene, 46966 ncRNA 12161 Mm.385759 NM_007556 ENSMUSG00000039004 Bmp6 D13Wsu115e|Vgr1 - 13 A3.3|13 18.15 cM bone morphogenetic protein 6 protein-coding 170720 Mm.130832 NM_130886 ENSMUSG00000013483 Card14 Bimp2|CARMA2 - 11|11 E2 caspase recruitment domain family, member 14 protein-coding 791400 B430203G13Rik - - - RIKEN cDNA B430203G13 gene protein-coding 27895 D16Ium70 - - 16 44.61 cM DNA segment, Chr 16, Indiana University Medical 70 unknown 100124698 Trbv29 Gm16649|Tcrb|Tcrb-V7|Vbeta7 - 6 19.38 cM|6 B1 T cell receptor beta, variable 29 pseudo 104191 Sgp2 Sgp-2 - - serum gp70 production 2 protein-coding 100417906 Gm16027 - - 19|19 C3 heterogeneous nuclear ribonucleoprotein C pseudogene pseudo 627003 Gm6727 EG627003 - 7|7 A1 Crn, crooked neck-like 1 pseudogene pseudo 102640660 XR_383346 Gm36674 - - 14 B|14 predicted gene, 36674 ncRNA 107540 Rhv1 Rhv-1 - - resistance to hepatitis virus 1 protein-coding 105244769 XR_868506 Gm40321 - - 5 G1.1|5 predicted gene, 40321 ncRNA 102636244 Gm21912 - - Y|Y predicted gene, 21912 protein-coding 100862221 Gm21569 - - 12 D2|12 predicted gene, 21569 pseudo 70021 Mm.261681 NM_027289 ENSMUSG00000071547 Nt5dc2 2510015F01Rik - 14|14 B 5'-nucleotidase domain containing 2 protein-coding 668447 Gm13743 - - 2|2 D RWD domain containing 1 pseudogene pseudo 668124 Gm8986 EG668124 - 18|18 E2 ribosomal protein S11 pseudogene pseudo 28112 D15Wsu126e - - 15 20.52 cM DNA segment, Chr 15, Wayne State University 126, expressed unknown 328354 Mm.252404 NM_177813 ENSMUSG00000051729 Gm5087 C630025C03|EG328354 - 14 A1|14 predicted gene 5087 ncRNA 100036385 Fcs1 - - - fibroblast cell senescence 1 unknown 73667 Mm.159048 NM_001201332 ENSMUSG00000071398 2410004P03Rik - - 12|12 A1.1 RIKEN cDNA 2410004P03 gene protein-coding 105244381 XR_867042 Gm40000 - - 2 H3|2 predicted gene, 40000 ncRNA 109279967 LOC109279967 Mm577 - - VISTA enhancer mm577 biological-region 105245280 Gm40756 - - 10|10 predicted gene, 40756 ncRNA 96951 C76554 - - - expressed sequence C76554 unknown 85177 D14Mit35 - - 14 42.53 cM DNA segment, Chr 14, Massachusetts Institute of Technology 35 unknown 100504306 Gm20162 - - 18 B3|18 19.49 cM 39S ribosomal protein L15, mitochondrial-like pseudo 15404 Mm.294826 NM_010455 ENSMUSG00000038236 Hoxa7 AV118143|Hox-1.1|M6 - 6 B3|6 25.4 cM homeobox A7 protein-coding 666326 Gm8048 EG666326 - 5|5 E3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105247240 XM_011250749 Gm42372 - - 7 A2|7 predicted gene, 42372 protein-coding 100126206 Gm10551 - - - predicted gene 10551 unknown 226747 Mm.128165 NM_026375 ENSMUSG00000026491 Ahctf1 6230412P20Rik|AV011447|Elys - 1 H4|1 83.62 cM AT hook containing transcription factor 1 protein-coding 666739 Gm11662 - - 11|11 E1 ribosomal protein L3 pseudogene pseudo 102633060 XR_384251 Gm30977 - - 15 E1|15 predicted gene, 30977 ncRNA 78365 Mm.260345 NR_038057 ENSMUSG00000087211 Lhx1os 1500016L03Rik|Lhx1as - 11|11 C LIM homeobox 1, opposite strand ncRNA 28285 D10Jhu38 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 38 unknown 102633923 XR_387409 Gm31629 - - 1 E4|1 predicted gene, 31629 ncRNA 108611 Iap3rc23 - - - intracisternal A-type particle, U3 region, SINE repeat c-23 other 108168598 XM_017318804 LOC108168598 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 108168370 Gm46615 - - 18 E4|18 predicted gene, 46615 pseudo 62982 D17Mit231 - - 17 18.12 cM DNA Segment, Chr 17, Massachusetts Institute of Technology 231 unknown 414124 Mm.416164 NR_045174 ENSMUSG00000085298 F730035M05Rik - - 12 C2|12 RIKEN cDNA F730035M05 gene ncRNA 102634280 NR_154590 Gm48908 - - 2 C1.1|2 28.96 cM predicted gene 48908 ncRNA 30912 Mm.442611 AI317230 - - - EST AI317230 unknown 110839 Sycp1-rs3 Sycp-rs3 - - synaptonemal complex protein 1, related sequence 3 protein-coding 17083 Mm.196618 NM_010744 ENSMUSG00000032180 Tmed1 Il1rl1l|Ly84l|St2l - 9|9 A3 transmembrane p24 trafficking protein 1 protein-coding 12531 Mm.38444 NM_023117 ENSMUSG00000027330 Cdc25b AI604853 - 2 F1|2 63.29 cM cell division cycle 25B protein-coding 414089 Mm.123113 NM_001001496 ENSMUSG00000055691 Gja6 A530015O12Rik|Cnx33|Cx33|Gja-6 - X F4|X 73.95 cM gap junction protein, alpha 6 protein-coding 102637455 Gm16547 - - 1 H4|1 84.53 cM predicted gene 16547 pseudo 81904 Mm.214994 NM_133189 ENSMUSG00000069806 Cacng7 - - 7 A1|7 1.95 cM calcium channel, voltage-dependent, gamma subunit 7 protein-coding 112261 Orch4 - - 1 97.55 cM autoimmune orchitis resistance 4 unknown 102637733 XR_873843 Gm34469 - - 13 D1|13 predicted gene, 34469 ncRNA 102639835 XR_387517 Gm36055 - - 2 H4|2 predicted gene, 36055 ncRNA 100416051 Gm13719 - - 2|2 D dynamin 1-like pseudogene pseudo 14787 Mm.57052 NM_008164 ENSMUSG00000022580 Rhpn1 BB023497|Grbp|Rhophilin|mKIAA1929 - 15|15 D3 rhophilin, Rho GTPase binding protein 1 protein-coding 71033 Mm.159404 NR_015512 ENSMUSG00000085820 4933406K04Rik 4930426M03Rik|4930485I22Rik|4933427G14Rik - 12|12 F1 RIKEN cDNA 4933406K04 gene ncRNA 111482 Grr1 - - - growth and reproductive region 1 other 105243828 XR_866408 Gm39576 - - 2 C2|2 predicted gene, 39576 ncRNA 100043155 Gm4269 - - 19|19 C3 ribosomal protein S10 pseudogene pseudo 23914 Ifld3 - - - induced in fatty liver dystrophy 3 unknown 104038 Lop6 Lop-6 - - lens opacity 6 protein-coding 258200 Mm.419245 Olfr537-ps1 GA_x5J8B7TT8J8-398-3|MOR253-11P - 7|7 F4 olfactory receptor 537, pseudogene 1 pseudo 71934 Mm.158776 NM_024495 ENSMUSG00000027555 Car13 2310075C21Rik|Ca13 - 3|3 A1 carbonic anhydrase 13 protein-coding 227288 Mm.337035 NM_178241 ENSMUSG00000048480 Cxcr1 Il8ra - 1 C3|1 38.44 cM chemokine (C-X-C motif) receptor 1 protein-coding 105246579 XR_877863 Gm41850 - - 19 C3|19 predicted gene, 41850 ncRNA 96887 Mm.209265 C78997 - - - expressed sequence C78997 protein-coding 102639159 Gm21763 - - Y|Y predicted gene, 21763 protein-coding 668368 Gm9132 EG668368 - 7 F1|7 predicted gene 9132 pseudo 100040281 Gm10061 - - 16|16 C3.3 predicted gene 10061 protein-coding 66201 Mm.227983 NM_025418 ENSMUSG00000019868 Vta1 1110001D18Rik|1110059P08Rik|AU040813|C85340|LIP5|SBP1 - 10|10 A2 vesicle (multivesicular body) trafficking 1 protein-coding 71168 4933421H06Rik - - 9|9 RIKEN cDNA 4933421H06 gene protein-coding 105245565 XR_873693 Gm41007 - - 13 C1|13 predicted gene, 41007 ncRNA 102635413 XR_387846 Gm32760 - - 8 C2|8 predicted gene, 32760 ncRNA 12587 Mm.262447 NM_019394 ENSMUSG00000089661 Mia CD-RAP|Cdrap|Mia1 - 7 A3|7 15.84 cM melanoma inhibitory activity protein-coding 70203 2310061B05Rik - - - RIKEN cDNA 2310061B05 gene protein-coding 109411 Aliq3 Ali3 - 17 50.97 cM acute lung injury QTL 3 unknown 359853 DXMgc5 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 5 unknown 11945 Mm.154039 NM_009724 ENSMUSG00000031449 Atp4b AV080843 - 8 A1.1|8 5.89 cM ATPase, H+/K+ exchanging, beta polypeptide protein-coding 434034 Mm.424510 Igkv4-90 Gm16906|an4 - 6|6 C1 immunoglobulin kappa chain variable 4-90 other 330554 Mm.236510 NM_177893 ENSMUSG00000033458 Fan1 6030441H18Rik|Mtmr15|mFAN1 - 7|7 C FANCD2/FANCI-associated nuclease 1 protein-coding 100416801 Gm18262 - - 13|13 A1 R3H domain containing 2 pseudogene pseudo 105243018 XR_869851 Gm39062 - - 7 E2|7 predicted gene, 39062 ncRNA 68306 Mm.399193 NR_040476 ENSMUSG00000084834 4930565N06Rik 4930428L02Rik - 16|16 B3 RIKEN cDNA 4930565N06 gene ncRNA 66039 Mm.33344 NM_025311 ENSMUSG00000072676 Tmem254a 0610008K04Rik|0610010A22Rik|AA960404|D14Ertd449e|Tmem254 - 14 A3|14 15.19 cM transmembrane protein 254a protein-coding 102634149 XR_383100 Gm31804 - - 14 A2|14 predicted gene, 31804 ncRNA 105244198 XR_866423 Gm39848 - - 2 C3|2 predicted gene, 39848 ncRNA 102465552 NR_105881 ENSMUSG00000099292 Mir6916 Gm27721|mmu-mir-6916 - 10|10 D3 microRNA 6916 ncRNA 109825 Brm1 - - 9 31.63 cM brachyury modifier 1 protein-coding 100534376 LOC100534376 - - X|X A1.1 cell division cycle 6 homolog (S. cerevisiae) pseudogene pseudo 791267 Mm.127699 Gm16488 - - 2 E3|2 predicted gene 16488 unknown 100125404 Femwf11 - - - femur work to failure 11 unknown 67016 Mm.335347 NM_194334 ENSMUSG00000037410 Tbc1d2b 1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055 - 9|9 E3.1 TBC1 domain family, member 2B protein-coding 69878 Mm.259642 NM_027246 ENSMUSG00000020018 Snrpf 2010013O18Rik|SMF|sm-F|snRNP-F - 10|10 C2 small nuclear ribonucleoprotein polypeptide F protein-coding 102637068 Gm33972 - - 1|1 predicted gene, 33972 ncRNA 102639920 Gm36119 - - 9|9 predicted gene, 36119 ncRNA 72056 Mm.23780 NM_028077 ENSMUSG00000035372 1810055G02Rik AI256204 - 19|19 A RIKEN cDNA 1810055G02 gene protein-coding 21074 T(12;17)9Gso T9Gso - - reciprocal translocation, Chr 12 and 17, Generoso 9 other 58179 Mm.358684 NM_021378 ENSMUSG00000033027 Klrc3 Klrc2|Nkg2e - 6|6 F3 killer cell lectin-like receptor subfamily C, member 3 protein-coding 360124 D17Brg198 - - 17 2.16 cM DNA segment, Chr 17, David E. Bergstrom 198 unknown 100504700 Gm15390 - - 1|1 50.34 cM predicted gene 15390 pseudo 102637375 Gm34203 - - 1|1 predicted gene, 34203 ncRNA 108168151 Gm46450 - - 14 B|14 predicted gene, 46450 pseudo 71259 4933433M23Rik - - 15|15 RIKEN cDNA 4933433M23 gene protein-coding 102640512 XR_382830 Gm36553 - - 13 D1|13 predicted gene, 36553 ncRNA 71302 Mm.329396 NM_175164 ENSMUSG00000036452 Arhgap26 1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621 - 18|18 B3 Rho GTPase activating protein 26 protein-coding 26903 Mm.220982 NM_021469 ENSMUSG00000033788 Dysf 2310004N10Rik|AI604795|D6Pas3 - 6 C3|6 36.14 cM dysferlin protein-coding 114779 Actd4 - - 9 26.83 cM activity-distance traveled 4 unknown 62248 D18Mit24 - - 18 27.17 cM DNA segment, Chr 18, Massachusetts Institute of Technology 24 unknown 75533 Mm.275430 NM_080637 ENSMUSG00000035984 Nme5 1700019D05Rik|Nm23-M5 - 18|18 B1 NME/NM23 family member 5 protein-coding 72818 Mm.410846 NR_045906 ENSMUSG00000084966 2810471M01Rik - - 11|11 A3.3 RIKEN cDNA 2810471M01 gene ncRNA 74849 Mm.393851 XR_001778558 ENSMUSG00000110289 4930412F12Rik - - 8|8 B2 RIKEN cDNA 4930412F12 gene ncRNA 85043 D4Mit19 - - 4 5.58 cM DNA segment, Chr 4, Massachusetts Institute of Technology 19 unknown 667574 Mm.446617 Trav9d-4 Gm13907 - 14|14 C2 T cell receptor alpha variable 9D-4 other 18115 Mm.132584 NM_008710 ENSMUSG00000116207 Nnt 4930423F13Rik|AI323702|BB168308 - 13 D2.3|13 67.21 cM nicotinamide nucleotide transhydrogenase protein-coding 236790 Mm.474772 NM_172779 ENSMUSG00000035967 Ints6l 4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b - X|X A6 integrator complex subunit 6 like protein-coding 100043501 Gm4481 - - 14|14 E4 predicted gene 4481 pseudo 100503682 Gm19829 - - 14|14 E4 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 100504724 Gm13510 - - 2 C1.1|2 28.52 cM ubiquitin-conjugating enzyme E2 D4-like pseudo 100036075 Grwtj4 - - - growth trajectory 4 unknown 384719 Gm5341 EG384719 - 7|7 D3 basic transcription factor 3 pseudogene pseudo 224480 Mm.328756 NM_198958 ENSMUSG00000023802 Nox3 GP91-3|het|nmf250 - 17 A1|17 2.05 cM NADPH oxidase 3 protein-coding 101028 Mm.446165 BB070754 - - - expressed sequence BB070754 unknown 76609 Mm.396238 NR_045386 ENSMUSG00000100134 1700065O20Rik - - 18|18 D1 RIKEN cDNA 1700065O20 gene ncRNA 320129 Mm.285619 NM_177078 ENSMUSG00000042249 Grk3 4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2 - 5 F|5 55.29 cM G protein-coupled receptor kinase 3 protein-coding 74516 Mm.446088 NM_175209 ENSMUSG00000048636 A730049H05Rik 8430417A20Rik - 6|6 D1 RIKEN cDNA A730049H05 gene unknown 100034828 Sbmd1 - - 2 21.81 cM spinal bone mineral density 1 unknown 100047000 Gm13005 - - 4|4 D3 chromobox homolog 5 pseudogene pseudo 73644 Mm.369885 NR_044985 ENSMUSG00000113800 2210039B01Rik - - 12|12 C3 RIKEN cDNA 2210039B01 gene ncRNA 114753 Mors3 - - 14 31.51 cM modifier of obesity related sterility 3 unknown 668967 Gm14370 - - X|X A1.1 predicted gene 14370 pseudo 102634647 Gm29370 - - Y|Y predicted gene 29370 protein-coding 75721 Mm.65456 NM_183113 ENSMUSG00000079324 4932414N04Rik - - 2|2 C2 RIKEN cDNA 4932414N04 gene protein-coding 70926 4921523P09Rik - - 5|5 E4 RIKEN cDNA 4921523P09 gene protein-coding 66631 Mm.239196 NM_133680 ENSMUSG00000038212 Mfsd14b 5730414C17Rik|AU045608|AW539692|Hiatl1 - 13|13 B3 major facilitator superfamily domain containing 14B protein-coding 102633818 XR_384163 Gm31550 - - 15 D3|15 predicted gene, 31550 ncRNA 668210 Mm.420607 NM_001145360 ENSMUSG00000090685 Gm9047 EG668210 - 6|6 A3.3 predicted gene 9047 protein-coding 62777 D16Mit140 - - 16 40.3 cM DNA segment, Chr 16, Massachusetts Institute of Technology 140 unknown 66599 Mm.41449 NM_025654 ENSMUSG00000010362 Rdm1 2410008M22Rik|AW212028|Rad52b - 11|11 D RAD52 motif 1 protein-coding 242809 Gm4959 EG242809 - 5|5 A1 ribosomal protein L3 pseudogene pseudo 268970 Mm.9935 NM_172964 ENSMUSG00000024043 Arhgap28 AU044757|AW550892|E130310N06 - 17|17 E1.1-E1.2 Rho GTPase activating protein 28 protein-coding 102467492 n-TCgca13 n-Tc13 - 6 B2.3|6 nuclear encoded tRNA cysteine 13 (anticodon GCA) tRNA 100862091 Gm21469 - - Y|Y predicted gene, 21469 protein-coding 108167870 XR_001780136 Gm46263 - - 11 C|11 predicted gene, 46263 ncRNA 111225 Sycp1-ps2 - - - synaptonemal complex protein 1, pseudogene 2 pseudo 433630 Rpl21-ps11 EG433630|Gm10089 - 3|3 F2.1 ribosomal protein L21, pseudogene 11 pseudo 102465663 NR_106062 ENSMUSG00000105438 Mir7094-1 mmu-mir-7094-1 - 12|12 F2 microRNA 7094-1 ncRNA 623230 Mm.421179 NM_001201367 ENSMUSG00000070720 Tmem200b EG623230 - 4|4 D2.3 transmembrane protein 200B protein-coding 546331 Gm5937 EG546331 - X|X B predicted gene 5937 pseudo 102636597 XR_379814 Gm33616 - - 9 F1|9 predicted gene, 33616 ncRNA 319745 Mm.124328 D130067C23Rik - - 2|2 C3 RIKEN cDNA D130067C23 gene unknown 108167520 Gm45420 - - 8 A1.1|8 predicted gene 45420 pseudo 64243 Mm.423722 NR_002895 ENSMUSG00000096019 Snord116 MBII-85|Pwcr1 - 7 B5|7 29.0 cM small nucleolar RNA, C/D box 116 snoRNA 102465309 NR_105854 ENSMUSG00000098687 Mir7k Gm27814|Mirlet7k|mmu-let-7k - 5|5 G3 microRNA 7k ncRNA 791282 Mm.406769 NR_152179 ENSMUSG00000057802 Gm10030 - - 9 F2|9 predicted gene 10030 ncRNA 18537 Mm.258431 NM_008786 ENSMUSG00000019795 Pcmt1 C79501|PIMT - 10 A1|10 2.26 cM protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 protein-coding 66338 Mm.46166 NM_025496 ENSMUSG00000042200 Cdrt4 1700019I23Rik - 11|11 B3 CMT1A duplicated region transcript 4 protein-coding 170755 Mm.336410 NM_133220 ENSMUSG00000025915 Sgk3 2510015P22Rik|A330005P07Rik|Cisk|fy|fz - 1 A2|1 2.08 cM serum/glucocorticoid regulated kinase 3 protein-coding 102633545 XR_373512 Gm31344 - - 1 C3|1 predicted gene, 31344 ncRNA 17008 ltnr2 - - - lentinan responsive 2 unknown 258306 Mm.377426 NM_146309 ENSMUSG00000111159 Olfr1337 MOR259-10|Olfr219-ps1 - 4|4 D2.1 olfactory receptor 1337 protein-coding 545530 Gm5847 EG545530 - 3|3 E1 3-phosphoglycerate dehydrogenase pseudogene pseudo 108549 Iapls3-34 - - - intracisternal A particle, lymphocyte specific 3-34 other 330956 Mm.207985 NR_040767 ENSMUSG00000111290 Gm5122 A430102L10 - 9 B|9 predicted gene 5122 ncRNA 105244592 XR_867778 Gm40182 - - 3 H3|3 predicted gene, 40182 ncRNA 105245783 XR_874710 LOC105245783 - - 14 D1 60S ribosomal protein L35a pseudogene pseudo 109279839 LOC109279839 - - - Fgfr3 5' regulatory region biological-region 114645 Abmm - - 12 60.56 cM antibody mediated myocarditis unknown 69790 Mm.195562 NM_027212 ENSMUSG00000038622 Med30 1810038N03Rik|2510044J04Rik|TRAP25|Thrap6 - 15|15 C mediator complex subunit 30 protein-coding 320414 B930069K15Rik - - 11|11 RIKEN cDNA B930069K15 gene protein-coding 667961 XR_376764 ENSMUSG00000096732 Gm8897 - - 5 A1|5 predicted gene 8897 pseudo 77574 Mm.24652 NM_029930 ENSMUSG00000036667 Tcaf1 2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a - 6 B2.1|6 TRPM8 channel-associated factor 1 protein-coding 58181 Mm.103794 NM_021380 ENSMUSG00000026416 Il20 Zcyto10 - 1|1 E4 interleukin 20 protein-coding 112214172 LOC112214172 - - - spermatogenesis associated 2 pseudogene pseudo 105866 Mm.298210 NM_213728 ENSMUSG00000056605 Krt72 AI507495|K6irs2|Krt2-35|Krt72-ps - 15|15 F2 keratin 72 protein-coding 100038669 Plast4 - - - plasma plant sterol 4 unknown 108168982 XR_001784470 Gm46873 - - 4 D3|4 predicted gene, 46873 ncRNA 668765 Gm9342 - - 2|2 E3 doublecortin domain-containing protein 1 pseudogene pseudo 61140 D9Mit334 - - 9 29.12 cM DNA Segment, Chr 9 Massachusetts Institute of Technology 334 unknown 100417666 Gm14785 - - X|X C2 ornithine decarboxylase, structural 1 pseudogene pseudo 111787 Iapls1-17 - - - intracisternal A particle, lymphocyte specific 1-17 other 28045 D16Ium37e D16Ium37 - - DNA segment, Chr 16, Indiana University Medical 37, expressed unknown 109578 Dbf - - - doublefoot unknown 105246492 Gm41777 - - 18|18 predicted gene, 41777 ncRNA 70487 Mm.58958 NR_040378 ENSMUSG00000099170 5730403I07Rik - - 9|9 D RIKEN cDNA 5730403I07 gene ncRNA 100126471 Trav4-3 Gm17002|Trav4d-3 - 14|14 C2 T cell receptor alpha variable 4-3 other 100416944 Gm15586 - - 9|9 A2 sodium channel modifier 1 pseudogene pseudo 105242634 Mm.448175 Gm38793 - - 6|6 predicted gene, 38793 ncRNA 492959 Epfq1 - - - epididymal fat pad weight QTL 1 unknown 100035934 Plep - - 4 43.16 cM plasma lepin levels unknown 102639562 XR_381952 Gm35846 - - 12 F1|12 predicted gene, 35846 ncRNA 113858 Mm.436285 NM_053231 ENSMUSG00000115181 Vmn1r10 V1rc1 - 6|6 B3 vomeronasal 1 receptor 10 protein-coding 77481 Mm.294552 C030048H21Rik - - 2|2 A3 RIKEN cDNA C030048H21 gene protein-coding 20611 Mm.347498 NM_009220 ENSMUSG00000095267 Ssty1 Smy|Ssty - Y|Y A1 spermiogenesis specific transcript on the Y 1 protein-coding 70616 Mm.17665 NM_027481 ENSMUSG00000011306 Sugp1 5730496N02Rik|Sf4 - 8|8 B3.3 SURP and G patch domain containing 1 protein-coding 100048204 Gm17786 - - 8|8 E1 40S ribosomal protein S23-like pseudo 100416679 Gm18188 - - 10|10 A2 centrosomal protein 55 pseudogene pseudo 23815 B437A17S - - - DNA segment B437-A-17-S unknown 192344 NEWENTRY - - - Record to support submission of GeneRIFs for a gene not in Gene (Mus muscaris; house mouse; mice C57BL/6xCBA/CaJ hybrid; mouse). other 112150 Afw7 - - - abdominal fat weight QTL 7 unknown 68598 Mm.29685 NM_172400 ENSMUSG00000054405 Dnajc8 1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514 - 4|4 D2.3 DnaJ heat shock protein family (Hsp40) member C8 protein-coding 102637999 Gm34674 - - 13|13 predicted gene, 34674 ncRNA 106974 AU015858 - - - expressed sequence AU015858 protein-coding 236451 Mm.247736 NM_001164327 ENSMUSG00000091649 Phf11b EG236451|Gm4902 - 14|14 C3 PHD finger protein 11B protein-coding 654457 Mm.389363 NM_001039120 ENSMUSG00000074680 Defb26 EG654457 - 2|2 G3 defensin beta 26 protein-coding 111991 Cq1 Chol3 - 1 67.71 cM cholesterol QTL 1 unknown 62588 D13Mit103 - - 13 41.95 cM DNA segment, Chr 13, Massachusetts Institute of Technology 103 unknown 110229 Igh-Nbp - - - immunoglobulin heavy chain Nbp other 269784 Mm.321683 NM_173004 ENSMUSG00000064293 Cntn4 9630050B05|Axcam|BIG-2 - 6|6 E1 contactin 4 protein-coding 414758 Mm.100056 NM_001001737 ENSMUSG00000074733 Zfp950 5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84 - 19|19 D3 zinc finger protein 950 protein-coding 102633942 Mm.244634 XR_374226 ENSMUSG00000085275 Gm14487 - - 2 B|2 21.71 cM predicted gene 14487 ncRNA 231123 Mm.319286 NM_146159 ENSMUSG00000079555 Haus3 D4S43h|D5H4S43|D5H4S43E - 5 B2|5 17.84 cM HAUS augmin-like complex, subunit 3 protein-coding 100526498 NR_037271 ENSMUSG00000092832 Mir3088 mir-3088|mmu-mir-3088 - 2 A3|2 19.38 cM microRNA 3088 ncRNA 61284 D2Mit261 - - 2 74.73 cM DNA segment, Chr 2, Massachusetts Institute of Technology 261 unknown 67503 Mm.87069 NM_026204 ENSMUSG00000103746 1700001G17Rik - - 1|1 B RIKEN cDNA 1700001G17 gene ncRNA 213711 Gm4785 EG213711 - 1|1 B family with sequence similarity 192, member A pseudogene pseudo 77866 Mm.137053 NR_040708 ENSMUSG00000086782 E130102H24Rik - - 4|4 C6 RIKEN cDNA E130102H24 gene ncRNA 19470 Rb(11.13)4Bnr Rb4Bnr - - Robertsonian translocation, Chr 11 and 13, Universitat Bonn/Rhein 4 other 102638868 Gm35329 - - 4|4 predicted gene, 35329 ncRNA 331532 Mm.41605 NM_177919 ENSMUSG00000054034 Tceal5 6430401A05Rik - X|X F1 transcription elongation factor A (SII)-like 5 protein-coding 108112 Mm.24790 NM_201256 ENSMUSG00000090264 Eif4ebp3 4e-bp3 - 18|18 B2 eukaryotic translation initiation factor 4E binding protein 3 protein-coding 668943 Gm14276 - - 2|2 H1 ribosomal protein S2 pseudogene pseudo 100039707 Mm.347377 NM_001128601 ENSMUSG00000079427 Mthfsl Gm2382 - 9 E3.1|9 5, 10-methenyltetrahydrofolate synthetase-like protein-coding 100302588 Gm14621 - - X|X A5 methyl-CpG binding domain protein 3-like 2 pseudogene pseudo 102633086 LOC102633086 - - 1 G3 high mobility group protein B3 pseudogene pseudo 30824 DXChri4 - - - DNA segment, Chr X, Children's Hospital Research Institute 4 unknown 111795 Iapls3-17 - - - intracisternal A particle, lymphocyte specific 3-17 other 216440 Mm.295246 NM_177614 ENSMUSG00000040462 Os9 4632413K17Rik|AU022351 - 10|10 D3 amplified in osteosarcoma protein-coding 62781 D16Mit134 - - 16 23.45 cM DNA segment, Chr 16, Massachusetts Institute of Technology 134 unknown 102635752 XR_390869 Gm33011 - - 4 D3|4 predicted gene, 33011 ncRNA 71738 Mm.50841 NM_174857 ENSMUSG00000033207 Mamdc2 1200015L10Rik|AI591564|mamcan - 19|19 B MAM domain containing 2 protein-coding 15468 Mm.32020 NM_133182 ENSMUSG00000020230 Prmt2 AI504737|Hrmt1l1 - 10 C1|10 38.74 cM protein arginine N-methyltransferase 2 protein-coding 112135 Bglq16 - - 15 16.74 cM body growth late QTL 16 unknown 68323 Mm.49041 NM_026675 ENSMUSG00000037349 Nudt22 0610006K04Rik|AI851793|AW545547 - 19|19 A nudix (nucleoside diphosphate linked moiety X)-type motif 22 protein-coding 360059 D17Jcs99 - - - DNA segment, Chr 17, John C. Schimenti 99 unknown 102641346 Mm.404614 XR_869430 Gm38549 - - 6 F3|6 predicted gene, 38549 ncRNA 114326 Pas12 - - - pulmonary adenoma susceptibility 12 unknown 435962 Gm5731 EG435962 - 7|7 B1 predicted gene 5731 pseudo 105245981 XM_011245782 Gm41349 - - 15 D3|15 predicted gene, 41349 protein-coding 75378 4930597G05Rik - - 13|13 A3.1 RIKEN cDNA 4930597G05 gene protein-coding 100035295 Rbcq1 - - 1 50.78 cM red blood cell QTL 1 unknown 723867 NR_029953 ENSMUSG00000070133 Mir434 Mirn434|mir-434|mmu-mir-434 - 12|12 F1 microRNA 434 ncRNA 62941 D11Mit320 - - 11 43.21 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 320 unknown 102524 Mm.395526 AI451250 - - - expressed sequence AI451250 protein-coding 225655 Mm.221420 NM_144867 ENSMUSG00000024530 Prelid3a A230074A19Rik|BC019561|Slmo1 - 18|18 E1 PRELI domain containing 3A protein-coding 100034990 Grwtj3 - - - growth trajectory 3 unknown 100036436 Popoa - - 1 47.76 cM premature ovulation and primary oocyte arrest unknown 18312 Mm.377102 NM_008762 ENSMUSG00000059043 Olfr15 MOR256-17|OR3 - 16|16 A1 olfactory receptor 15 protein-coding 68038 Mm.245355 NM_026522 ENSMUSG00000025512 Chid1 3110023E09Rik|AI841869 - 7|7 F5 chitinase domain containing 1 protein-coding 61946 D6Mit325 - - 6 40.0 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 325 unknown 668463 Kpna2-ps EG668463|Gm9183 - 17|17 C Kpna2 retrotransposed pseudogene pseudo 97735 C81282 - - - expressed sequence C81282 unknown 111624 Xmv36 Xmv-36 - - xenotropic murine leukemia virus 36 other 105244422 XR_867146 Gm40031 - - 2 H4|2 predicted gene, 40031 ncRNA 319545 Mm.390543 NR_028421 ENSMUSG00000112980 D430020J02Rik - - 12|12 F2 RIKEN cDNA D430020J02 gene ncRNA 74717 Mm.250430 NM_028848 ENSMUSG00000026611 Spata17 1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11 - 1|1 H5 spermatogenesis associated 17 protein-coding 61660 D7Mit261 - - 7 47.52 cM DNA segment, Chr 7, Massachusetts Institute of Technology 261 unknown 14745 Mm.4772 NM_010336 ENSMUSG00000038668 Lpar1 AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1 - 4 B3|4 32.2 cM lysophosphatidic acid receptor 1 protein-coding 110709 Braf-rs1 Braf - - Braf transforming gene, related sequence 1 protein-coding 100043658 Gm4574 - - 7|7 A3 chromobox protein homolog 3 pseudogene pseudo 70696 Mm.54544 NM_027512 ENSMUSG00000031179 3830417A13Rik - - X|X A7.1 RIKEN cDNA 3830417A13 gene protein-coding 101202683 Mm.393309 NR_105051 Dreh - - 17 E1.1|17 down-regulated in hepatocellular carcinoma ncRNA 108168556 XM_017318754 LOC108168556 - - Y D Y-linked testis-specific protein 1-like protein-coding 380969 Mm.22915 NM_001001884 ENSMUSG00000023009 Nckap5l C230021P08Rik|Cep169 - 15|15 F1 NCK-associated protein 5-like protein-coding 102634302 XR_878744 ENSMUSG00000098649 Gm27199 - - 5 F|5 predicted gene 27199 ncRNA 110252 Lvis2 - - - lymphoid viral insertion site 2 protein-coding 105246475 XR_877505 Gm41760 - - 18 E1|18 predicted gene, 41760 ncRNA 13400 Mm.6529 NM_032418 ENSMUSG00000030409 Dmpk DM|DMK|Dm15|MDPK|MT-PK - 7 A3|7 9.46 cM dystrophia myotonica-protein kinase protein-coding 545242 Gm5819 EG545242 - 18|18 A1 predicted gene 5819 ncRNA 629059 Mm.291864 NM_001243857 ENSMUSG00000035184 Fam124a EG629059 - 14 D1|14 family with sequence similarity 124, member A protein-coding 268307 Mm.387036 4833431D13Rik - - 10|10 B5.3 RIKEN cDNA 4833431D13 gene unknown 102638690 Mm.378461 XR_376923 ENSMUSG00000107070 Gm35191 - - 5 B3|5 predicted gene, 35191 ncRNA 107585 Mm.154427 NM_172119 ENSMUSG00000075707 Dio3 - - 12|12 F1 deiodinase, iodothyronine type III protein-coding 11841 Mm.5061 NM_007477 ENSMUSG00000062421 Arf2 - - 11 E1|11 67.64 cM ADP-ribosylation factor 2 protein-coding 50905 Mm.269363 NM_019583 ENSMUSG00000015966 Il17rb Evi27|IL-17ER|IL-17Rh1|IL17RH1|Il17br - 14 B|14 18.39 cM interleukin 17 receptor B protein-coding 55940 D2Mit19 D2Mit25 - 2|2 65.43 cM DNA segment, Chr 2, Massachusetts Institute of Technology 19 unknown 102640359 Mm.440831 NR_132423 1700023D09Rik AV208457 - 19|19 A RIKEN cDNA 1700023D09 gene ncRNA 74334 Mm.4206 NM_145824 ENSMUSG00000037415 Ranbp10 4432417N03Rik - 8|8 D3 RAN binding protein 10 protein-coding 270893 Mm.341593 NM_023438 ENSMUSG00000020701 Tmem132e Gm644 - 11|11 C transmembrane protein 132E protein-coding 101403 Mm.395208 AW987477 - - - expressed sequence AW987477 unknown 100416915 Gm18318 - - 8|8 A1.1 high mobility group box 1 pseudogene pseudo 232077 Mm.297656 NM_001101464 ENSMUSG00000055874 Foxi3 - - 6|6 C1 forkhead box I3 protein-coding 240921 Gm4955 EG240921|Ifi206 - 1|1 H3 predicted gene 4955 protein-coding 668786 Gm9359 EG668786 - 12|12 A2 tripartite motif-containing 13 pseudogene pseudo 102637173 Gm28637 - - Y|Y predicted gene 28637 protein-coding 77042 Mm.66017 NM_029848 ENSMUSG00000029680 Hyal4 4632428M18Rik|CSHY - 6|6 A3.1 hyaluronoglucosaminidase 4 protein-coding 75369 Mm.389696 NR_040704 ENSMUSG00000105773 4930563F08Rik - - 5|5 G2 RIKEN cDNA 4930563F08 gene ncRNA 73130 Mm.363960 NM_028876 ENSMUSG00000063406 Tmed5 3110020O18Rik|4432412D15Rik|p24gamma2 - 5|5 F transmembrane p24 trafficking protein 5 protein-coding 77394 9530025H10Rik - - 18|18 RIKEN cDNA 9530025H10 gene protein-coding 98146 C78505 - - - expressed sequence C78505 unknown 259006 Mm.377785 NM_147004 ENSMUSG00000043692 Olfr399 MOR255-1 - 11|11 B4 olfactory receptor 399 protein-coding 100418274 Gm19112 - - 4|4 C7 protein phosphatase 1, catalytic subunit, gamma isoform pseudogene pseudo 53768 DXHXS178 C44E12R|DXPas15 - - DNA segment, Chr X, human DXS178 unknown 553090 Mm.61064 LOC553090 - - - uncharacterized LOC553090 unknown 30050 Mm.4465 NM_013890 ENSMUSG00000035949 Fbxw2 2700071L08Rik|FBW2|Fwd2|MD6 - 2|2 B F-box and WD-40 domain protein 2 protein-coding 112111 Bgeq2 - - - body growth early QTL 2 unknown 100415992 Gm14610 - - X|X A4 predicted gene 14610 pseudo 76871 Mm.460743 4930422N03Rik - - X|X RIKEN cDNA 4930422N03 gene protein-coding 51944 Mm.252695 NM_026412 ENSMUSG00000027331 Knstrn 1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1 - 2|2 E5 kinetochore-localized astrin/SPAG5 binding protein-coding 102639779 XR_375841 Gm36010 - - 3 F2.1|3 predicted gene, 36010 ncRNA 28091 DYzEms9 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 9 unknown 359890 DXMgc13 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 13 unknown 66659 Mm.101368 NM_019800 ENSMUSG00000028093 Acp6 5730559A09Rik|ACPL1|AU022842|mPACPL1 - 3|3 F2.1 acid phosphatase 6, lysophosphatidic protein-coding 102633053 XR_383819 Gm30971 - - 15 A1|15 predicted gene, 30971 ncRNA 67963 Mm.282556 NM_023409 ENSMUSG00000021242 Npc2 2700012J19Rik|AA408070|AU045843|HE1 - 12|12 D1 NPC intracellular cholesterol transporter 2 protein-coding 102638672 XR_386043 Gm35180 - - 18 A1|18 predicted gene, 35180 ncRNA 105247248 XR_881962 Gm42378 - - 7 B2|7 predicted gene, 42378 ncRNA 110682 Cd79bl Igbl|p8.6 - - CD79B antigen like complex other 12902 Mm.235387 NM_007758 ENSMUSG00000026616 Cr2 C3DR|CD21|CD35|Cr-1|Cr-2|Cr1 - 1 H6|1 98.44 cM complement receptor 2 protein-coding 636009 Gm14942 EG636009 - X|X E3 predicted gene 14942 protein-coding 78137 Mm.408171 4921540A03Rik - - 7|7 RIKEN cDNA 4921540A03 gene protein-coding 93761 Mm.229151 NM_053123 ENSMUSG00000031099 Smarca1 5730494M04Rik|Snf2l - X|X A4-A5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 13654 Mm.290421 NM_010118 ENSMUSG00000037868 Egr2 Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6 - 10 B5.1|10 34.96 cM early growth response 2 protein-coding 78724 D530031A16Rik - - 16|16 RIKEN cDNA D530031A16 gene protein-coding 554159 BB453382 - - - expressed sequence BB453382 protein-coding 102633685 XR_868245 Gm31449 - - 5 A1|5 predicted gene, 31449 ncRNA 51799 Mm.2560 NM_016759 ENSMUSG00000006575 Rundc3a RPIP-8|Rap2ip|Rpip8 - 11|11 D RUN domain containing 3A protein-coding 67602 Mm.288114 NM_026267 ENSMUSG00000030327 Necap1 1200016B17Rik|AI747569|mFLJ00061 - 6|6 F2 NECAP endocytosis associated 1 protein-coding 68250 Mm.27107 NM_026635 ENSMUSG00000032381 Fam96a 5730536A07Rik - 9|9 C family with sequence similarity 96, member A protein-coding 100310789 Gm17818 - - 4 A5|4 22.1 cM predicted gene, 17818 pseudo 105244513 XR_867504 Gm40107 - - 3 F2.2|3 predicted gene, 40107 ncRNA 665615 Mm.366701 NM_001110779 ENSMUSG00000090302 Gm7714 EG665615 - 5|5 E1 predicted gene 7714 protein-coding 100417114 Gm18404 - - 2|2 E1 AXL receptor tyrosine kinase pseudogene pseudo 100526462 NR_037210 ENSMUSG00000080331 Mir1298 mir-1298|mmu-mir-1298 - X F2|X 68.46 cM microRNA 1298 ncRNA 108168239 XR_001781647 Gm46514 - - 15 D2|15 predicted gene, 46514 ncRNA 100502928 Mm.482910 9430032J07Rik - - 9|9 RIKEN cDNA 9430032J07 gene unknown 399580 C130051G18Rik - - - RIKEN cDNA C130051G18 gene protein-coding 238988 Mm.318004 NM_177814 ENSMUSG00000040640 Erc2 6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha - 14 A3|14 16.51 cM ELKS/RAB6-interacting/CAST family member 2 protein-coding 26401 Mm.15918 NM_011945 ENSMUSG00000021754 Map3k1 MAPKKK1|MEKK1|Mekk - 13 D2.2|13 63.36 cM mitogen-activated protein kinase kinase kinase 1 protein-coding 100126464 Trav6-5 Gm13951 - 14|14 C2 T cell receptor alpha variable 6-5 other 21885 Mm.278444 NM_011599 ENSMUSG00000008305 Tle1 C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l - 4|4 C3 transducin-like enhancer of split 1 protein-coding 338368 Mm.444916 NM_177391 ENSMUSG00000049687 Fam109b C920005C14Rik|IPIP27B|Ses2 - 15|15 E1 family with sequence similarity 109, member B protein-coding 101056223 Gm29800 - - 14 D3|14 predicted gene, 29800 pseudo 102636036 Gm33220 - - 15|15 predicted gene, 33220 protein-coding 723839 NR_029757 ENSMUSG00000065617 Mir323 Mirn323|mir-323|mmu-mir-323 - 12 F1|12 microRNA 323 ncRNA 61036 D8Mit159 - - 8 10.35 cM DNA segment, Chr 8, Massachusetts Institute of Technology 159 unknown 12923 crhx crh - - cryptothrix unknown 74652 4930453J04Rik - - 17|17 RIKEN cDNA 4930453J04 gene protein-coding 71946 Mm.41423 NM_028013 ENSMUSG00000037419 Endod1 2210414F18Rik|2310067E08Rik|C85344 - 9|9 A1 endonuclease domain containing 1 protein-coding 108168722 LOC108168722 - - - creatine kinase B-type-like pseudo 75247 Mm.417813 NR_040567 4930553E22Rik - - 16|16 C3.3 RIKEN cDNA 4930553E22 gene ncRNA 116520 Obq7 - - 1 33.31 cM obesity QTL 7 unknown 76116 5830477G23Rik - - 17|17 A1 RIKEN cDNA 5830477G23 gene ncRNA 14115 Mm.249146 NM_007992 ENSMUSG00000064080 Fbln2 5730577E14Rik|FIBL-2 - 6 D1|6 40.42 cM fibulin 2 protein-coding 194788 Gm14644 - - X A5|X zinc finger domain containing pseudogene pseudo 100418401 Gm19185 - - 3|3 F3 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit pseudogene pseudo 100042253 Gm10043 - - 8|8 A2 LSM6 homolog, U6 small nuclear RNA associated pseudogene pseudo 385516 Gm14333 Gm1547|Gm654 - X|X A1.1 predicted gene 14333 pseudo 111043199 Gm46997 - - 12|12 predicted gene 46997 pseudo 492980 Im3 LCH8-30 - 8 34.43 cM immunoregulatory 3 unknown 239591 Mm.86807 NM_172818 ENSMUSG00000022388 Ttll8 1700019P01Rik|4933401B17 - 15|15 E3 tubulin tyrosine ligase-like family, member 8 protein-coding 72983 2900052O17Rik - - 10|10 RIKEN cDNA 2900052O17 gene protein-coding 102465647 NR_106036 ENSMUSG00000099079 Mir7068 Gm27570|mmu-mir-7068 - 8|8 B3.3 microRNA 7068 ncRNA 103931 U - - - umbrous unknown 676246 Gm9670 - - X|X D predicted gene 9670 pseudo 751532 NR_030498 ENSMUSG00000076050 Mir450b Mirn450b|mir-450b - X A5|X microRNA 450b ncRNA 102632495 Gm30553 - - 8|8 predicted gene, 30553 ncRNA 664610 Mm.381921 NM_001039695 ENSMUSG00000079633 Rhox4d Rhox4.4|Rhox4c - X|X A3.3 reproductive homeobox 4D protein-coding 271849 Mm.425101 NM_199022 ENSMUSG00000035109 Shc4 6230417E10Rik|9930029B02Rik|Gm685|RaLP - 2|2 F1 SHC (Src homology 2 domain containing) family, member 4 protein-coding 102638458 XR_875049 Gm35018 - - 15 A1|15 predicted gene, 35018 ncRNA 78871 B230117O15Rik - - - RIKEN cDNA B230117O15 gene protein-coding 329908 Mm.234544 NM_183225 ENSMUSG00000028514 Usp24 2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851 - 4|4 C7 ubiquitin specific peptidase 24 protein-coding 381715 Mm.382859 NR_073011 ENSMUSG00000069720 4930572O03Rik - - 5|5 A2 spermatogenesis associated glutamate (E)-rich protein pseudogene pseudo 100504235 Mm.84044 NR_038020 ENSMUSG00000101969 Gm20125 - - 10 A2|10 6.64 cM predicted gene, 20125 ncRNA 320742 Mm.391227 NR_027445 A230072C01Rik - - X|X A1.3 RIKEN cDNA A230072C01 gene ncRNA 100035109 Swrl1 - - 1 76.25 cM SWR lupus locus 1 unknown 102465565 NR_105901 ENSMUSG00000098282 Mir6936 Gm27574|mmu-mir-6936 - 11|11 E2 microRNA 6936 ncRNA 102635190 Mm.404766 XR_377901 Gm32592 - - 6 D3|6 predicted gene, 32592 ncRNA 100035090 W6q12 - - - weight 6 weeks QTL 12 unknown 61126 D5Mit389 - - 5 16.74 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 389 unknown 109986 Pat AJ-1 - - Pvt-associated transcript protein-coding 102632240 Mm.417237 NR_155447 ENSMUSG00000087214 Gm15555 - - 16 C3.1|16 43.44 cM predicted gene 15555 ncRNA 112365 Sle3 - - - systemic lupus erythmatosus susceptibility 3 unknown 74413 Mm.275939 NM_028924 ENSMUSG00000021187 Tc2n 4933406D09Rik|Mtac2d1|Tac2-N - 12|12 E tandem C2 domains, nuclear protein-coding 108169045 XM_017321208 Gm46913 - - 5 C3.1|5 predicted gene, 46913 protein-coding 102633743 XR_373996 Gm31496 - - 2 A1|2 predicted gene, 31496 ncRNA 109279936 LOC109279936 Mm282 - - VISTA enhancer mm282 biological-region 100503327 Gm19637 - - 1 C1.2|1 27.47 cM HMG domain-containing protein 4-like pseudo 319754 C530005L23Rik - - 16|16 RIKEN cDNA C530005L23 gene protein-coding 111858 Iapls1-48 - - - intracisternal A particle, lymphocyte specific 1-48 other 100035021 C7mlq - - 12 62.1 cM Cyp7a1 mRNA level QTL unknown 666170 Gm7964 EG666170 - 7|7 D3 heterogeneous nuclear ribonucleoprotein K pseudogene pseudo 100036304 Scpro9 - - 14 20.81 cM Stem cell proliferation 9 unknown 28022 D5Wsu152e - - 5 44.39 cM DNA segment, Chr 5, Wayne State University 152, expressed unknown 100628571 NR_039545 ENSMUSG00000092985 Mir378b mir-378b|mmu-mir-378b - 11 C|11 52.4 cM microRNA 378b ncRNA 18810 Mm.234912 NM_011117 ENSMUSG00000022565 Plec AA591047|AU042537|EBS1|PCN|PLTN|Plec1 - 15 D3|15 35.48 cM plectin protein-coding 384572 Mm.377900 NM_206872 ENSMUSG00000057513 Vmn1r177 V1rd12 - 7|7 A3 vomeronasal 1 receptor 177 protein-coding 384585 Mm.305164 NM_001256073 ENSMUSG00000095257 Scgb1b3 Abpa21|Abpa3|EG384585|Gm5325 - 7|7 B1 secretoglobin, family 1B, member 3 protein-coding 102467331 n-TLaag7 n-Tl7 - 13 A2|13 nuclear encoded tRNA leucine 7 (anticodon AAG) tRNA 100124550 Vmn2r-ps9 - - 3|3 E1 vomeronasal 2, receptor, pseudogene 9 pseudo 108169074 XR_001784988 Gm46924 - - 5 G2|5 predicted gene, 46924 ncRNA 105246787 XR_878761 Gm42025 - - 5 F|5 predicted gene, 42025 ncRNA 100043072 Mm.242832 NR_045897 A230070E04Rik Gm4210 - 14 D1|14 RIKEN cDNA A230070E04 gene ncRNA 384997 Mm.316644 NM_207263 ENSMUSG00000042250 Pglyrp4 Gm1478|Gm413 - 3|3 F1 peptidoglycan recognition protein 4 protein-coding 780930 Ighv1-51 - - 12|12 F2 immunoglobulin heavy variable V1-51 pseudo 100040537 Gm2828 - - 9|9 D predicted gene 2828 pseudo 100417550 Gm18683 - - 14|14 D3 coronin, actin binding protein 1B pseudogene pseudo 74989 Mm.388887 NM_029137 Csmd2os 4930465A12Rik - 4|4 D2.2 CUB and Sushi multiple domains 2, opposite strand protein-coding 96979 Mm.28048 NM_133783 ENSMUSG00000026820 Ptges2 0610038H10Rik|C79137|Gbf1|Mpges2|Pges2 - 2|2 B prostaglandin E synthase 2 protein-coding 100041631 XM_011251109 Gm20879 - - Y|Y E predicted gene, 20879 protein-coding 105247023 XR_001783806 Gm42205 Gm43207 - 3 A3|3 predicted gene, 42205 ncRNA 71621 4833404L02Rik - - 7|7 RIKEN cDNA 4833404L02 gene protein-coding 52919 D5Mnl25e D5Mnl25|D5Sc25 - - DNA segment, Chr 5, Massachusetts Neurogenetics Laboratory 25, expressed unknown 17059 Mm.480764 NM_008527 ENSMUSG00000030325 Klrb1c AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c - 6 F3|6 63.09 cM killer cell lectin-like receptor subfamily B member 1C protein-coding 102634907 XR_377897 Gm32380 - - 6 D3|6 predicted gene, 32380 ncRNA 100044748 Gm17766 100038974|Gm1991 - 8|8 A4 ribosomal protein L10A pseudogene pseudo 102642459 Gm14229 - - 2|2 62.05 cM predicted gene 14229 pseudo 442814 5031438A03Rik - - 8|8 E2 RIKEN cDNA 5031438A03 gene unknown 66646 Mm.240912 NM_025683 ENSMUSG00000026005 Rpe 2810429B02Rik|5730518J08Rik - 1|1 C3 ribulose-5-phosphate-3-epimerase protein-coding 112059 Vertcling - - 1 30.44 cM vertical clinging unknown 67443 Mm.28357 NM_026160 ENSMUSG00000031812 Map1lc3b 1010001C15Rik|Atg8|LC3b|Map1lc3 - 8|8 E1 microtubule-associated protein 1 light chain 3 beta protein-coding 19247 Mm.8681 NM_011202 ENSMUSG00000043733 Ptpn11 2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp - 5|5 F protein tyrosine phosphatase, non-receptor type 11 protein-coding 108167635 LOC108167635 - - 1 D UDP-glucuronosyltransferase 1-8 pseudogene pseudo 105246962 XR_001784928 LOC105246962 - - 5 F uncharacterized LOC105246962 ncRNA 20684 Mm.290906 NM_013673 ENSMUSG00000026222 Sp100 A430075G10Rik - 1 C5|1 43.6 cM nuclear antigen Sp100 protein-coding 108168386 XR_001782473 Gm44577 - - 18 B1|18 predicted gene 44577 ncRNA 100035963 Bwtn2 WTN1.1 - 1 54.7 cM body weight at necropsy 2 unknown 103094 AA516847 - - - expressed sequence AA516847 unknown 71721 Mm.477813 NM_024244 ENSMUSG00000043259 Fam13c 1200015N20Rik|C030038O19Rik|mKIAA1796 - 10|10 B5.3 family with sequence similarity 13, member C protein-coding 320211 Mm.442614 A130010C12Rik - - 8|8 E1 RIKEN cDNA A130010C12 gene protein-coding 260347 Mm.439173 Gm5037 EG260347|Frda-ps - 7|7 E1 frataxin pseudogene pseudo 50501 Mm.87365 NM_015768 ENSMUSG00000030069 Prok2 Bv8|PK2|Prok1 - 6 D3|6 46.29 cM prokineticin 2 protein-coding 14678 Mm.196464 NM_008138 ENSMUSG00000032562 Gnai2 C76432|Galphai2|Gia|Gnai-2 - 9 F1|9 58.43 cM guanine nucleotide binding protein (G protein), alpha inhibiting 2 protein-coding 101052 AA589573 - - - expressed sequence AA589573 unknown 19293 Mm.2766 NM_013645 ENSMUSG00000005716 Pvalb PV|Parv|Pva - 15 E1|15 36.93 cM parvalbumin protein-coding 16173 Mm.1410 NM_008360 ENSMUSG00000039217 Il18 Igif|Il-18 - 9 A5.3|9 27.75 cM interleukin 18 protein-coding 328788 Mm.99400 NM_001034871 ENSMUSG00000024224 Clpsl2 Gm749 - 17|17 A3.3 colipase-like 2 protein-coding 69479 Mm.158282 NM_001033148 ENSMUSG00000071103 1700029J07Rik - - 8|8 B1.1 RIKEN cDNA 1700029J07 gene protein-coding 53785 D0Tu13 D17Tu13 - - DNA segment, Tubingen 13 unknown 108168310 XR_001782009 Gm46570 - - 16 A3|16 predicted gene, 46570 ncRNA 226548 Mm.306954 NM_146104 ENSMUSG00000015750 Aph1a 6530402N02Rik|APH-1a - 3|3 F2.1 aph1 homolog A, gamma secretase subunit protein-coding 105244956 XR_872870 Gm40474 - - 12 D1|12 predicted gene, 40474 ncRNA 102638514 XM_006526402 ENSMUSG00000109238 Gm35060 - - 18 B1|18 predicted gene, 35060 protein-coding 105245839 XR_874888 Gm41228 - - 14 E2.1-E2.2|14 predicted gene, 41228 ncRNA 110954 Mm.100113 NM_052835 ENSMUSG00000008682 Rpl10 D0HXS648|DXHXS648|DXHXS648E|QM|QM16 - X A7.3|X 37.94 cM ribosomal protein L10 protein-coding 105242813 XR_880075 Gm38922 - - 11 C|11 predicted gene, 38922 ncRNA 21164 T(3;12)58H T58H - - reciprocal translocation, Chr 3 and 12, Harwell 58 other 320076 Mm.405557 C630001G18Rik - - 3|3 RIKEN cDNA C630001G18 gene protein-coding 100035479 Bmd32 Bmd25 - - bone mineral density 32 unknown 26914 Mm.283802 NM_012015 ENSMUSG00000015937 H2afy H2AF12M|mH2a1|macroH2A1 - 13|13 B1 H2A histone family, member Y protein-coding 245450 Mm.336081 NM_198863 ENSMUSG00000036790 Slitrk2 A930040J07 - X|X A7.1 SLIT and NTRK-like family, member 2 protein-coding 62521 D11Mit134 - - 11 18.51 cM DNA segment, Chr 11, Massachusetts Institute of Technology 134 unknown 102634562 Gm32111 - - 7 C|7 predicted gene, 32111 pseudo 102638224 XR_386906 Gm34836 - - X A1.1|X predicted gene, 34836 ncRNA 53057 I16SP6 - - - DNA segment, I16SP6 unknown 96984 C79313 - - - expressed sequence C79313 unknown 104147 Dmc - - - DMCM susceptibility unknown 110279 Mm.333722 NM_001081412 ENSMUSG00000009681 Bcr 5133400C09Rik|AI561783|AI853148|mKIAA3017 - 10 C1|10 38.49 cM breakpoint cluster region protein-coding 100384904 Gm20583 - - 8 A2|8 10.35 cM NSFL1 (p97) cofactor (p47) pseudogene pseudo 108168533 XM_017318720 ENSMUSG00000094647 LOC108168533 - - Y D X-linked lymphocyte-regulated protein PM1-like protein-coding 258178 Mm.489195 NM_001011662 ENSMUSG00000090629 Olfr180 MOR184-11P|MOR184-9|Olfr1563-ps1 - 16|16 C1.2 olfactory receptor 180 protein-coding 57748 Mm.100273 NM_021310 ENSMUSG00000021690 Jmy - - 13|13 C3 junction-mediating and regulatory protein protein-coding 62576 D12Mit156 - - 12 35.7 cM DNA segment, Chr 12, Massachusetts Institute of Technology 156 unknown 320016 D030016M11Rik - - 11|11 RIKEN cDNA D030016M11 gene protein-coding 227094 Mm.83541 NM_172654 ENSMUSG00000043015 Nemp2 5330401P04Rik|9830163O08|Tmem194b - 1|1 C1.1 nuclear envelope integral membrane protein 2 protein-coding 100038635 Mm.290447 Arih2os Gm10621 - 9 F2|9 ariadne RBR E3 ubiquitin protein ligase 2, opposite strand protein-coding 102633721 XR_391432 Gm31479 Gm45443 - 7 B3|7 predicted gene, 31479 ncRNA 102638275 XR_869834 Gm34877 - - 7 E2|7 predicted gene, 34877 ncRNA 21280 T(9;10)62H T62H - - reciprocal translocation, Chr 9 and 10, Harwell 62 other 112040 Bw16 - - - body weight QTL 16 unknown 111902 Xltr2 - - - xenotropic long terminal repeat-containing proviral locus 2 other 100036150 Scq1 SC1 - - spinal cord QTL 1 unknown 27467 78A11L - - - DNA segment, 78A11L unknown 100418468 Gm19230 - - 8|8 B3.1 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 pseudogene pseudo 210535 Mm.173153 NM_001163357 ENSMUSG00000078924 Gm12169 - - 11|11 B1.1 predicted gene 12169 protein-coding 383570 Gm5262 EG383570 - 1|1 F glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100415971 Gm14857 - - X|X D importin 5 pseudogene pseudo 386750 Mm.331076 NM_198864 ENSMUSG00000048304 Slitrk3 ST3 - 3|3 E3 SLIT and NTRK-like family, member 3 protein-coding 242987 Gm4962 EG242987 - 5|5 C1 adaptor protein complex AP-2, alpha 2 subunit pseudogene pseudo 100035333 Ctex - - 1 76.84 cM Ctla4 expression QTL unknown 216869 Mm.203747 NM_145429 ENSMUSG00000060216 Arrb2 AI326910|AW122872|Arr3 - 11 B3|11 42.99 cM arrestin, beta 2 protein-coding 493058 Heal10 - - 11 58.9 cM wound healing/regeneration 10 unknown 791320 Mm.440444 Gm9937 - - - predicted gene 9937 unknown 545747 Gm5865 EG545747 - 5|5 B3 predicted gene 5865 pseudo 668650 Gm9285 EG668650 - 12|12 A1.3 predicted gene 9285 pseudo 17965 Mm.9404 NM_008675 ENSMUSG00000041120 Nbl1 D4H1S1733E|DAN|Dana|NO3 - 4 70.57 cM|4 D3 neuroblastoma, suppression of tumorigenicity 1 protein-coding 69894 Mm.294126 NM_027251 ENSMUSG00000020083 Fam241b 2010107G23Rik|AA545165 - 10|10 B4 family with sequence similarity 241, member B protein-coding 103498 Mm.379673 AW743424 - - - expressed sequence AW743424 unknown 320983 Mm.124488 B130019D13Rik - - 14|14 RIKEN cDNA B130019D13 gene protein-coding 74610 Mm.283914 NM_029020 ENSMUSG00000028973 Abcb8 4833412N02Rik|AA409895 - 5|5 A3 ATP-binding cassette, sub-family B (MDR/TAP), member 8 protein-coding 234595 Mm.29267 NM_172758 ENSMUSG00000036534 Slc38a7 D430050E18 - 8|8 D1 solute carrier family 38, member 7 protein-coding 402773 Mm.210567 NM_001033483 ENSMUSG00000078925 D030018L15Rik - - 15|15 F1 nuclear receptor coactivator 2 pseudogene pseudo 227717 Mm.185027 NM_183424 ENSMUSG00000043102 Qrfp P518 - 2|2 B pyroglutamylated RFamide peptide protein-coding 243084 Mm.130801 NM_172880 ENSMUSG00000054537 Tmprss11e A030012E10|AY787860|DESC1|TTSP - 5|5 E1 transmembrane protease, serine 11e protein-coding 258926 Mm.357563 NM_146924 ENSMUSG00000095301 Olfr476 MOR204-3 - 7|7 E3 olfactory receptor 476 protein-coding 59002 Mm.46508 NM_021499 ENSMUSG00000029029 Wrap73 2610044M17Rik|5330425N03Rik|Dd57|Wdr8 - 4|4 E2 WD repeat containing, antisense to Trp73 protein-coding 97516 C77683 - - - expressed sequence C77683 protein-coding 258565 Mm.377570 NM_146572 ENSMUSG00000043226 Olfr1009 MOR175-3 - 2|2 D olfactory receptor 1009 protein-coding 170942 Mm.76062 NM_133362 ENSMUSG00000096768 Erdr1 edr - X F5 and Y E|Y erythroid differentiation regulator 1 protein-coding 12615 Mm.290563 NM_007681 ENSMUSG00000029177 Cenpa Cenp-A - 5 B1|5 16.76 cM centromere protein A protein-coding 100417296 Gm18512 - - 10|10 B3 crumbs homolog 1 pseudogene pseudo 108168772 XR_001783380 Gm46749 - - 2 C3|2 predicted gene, 46749 ncRNA 15290 Hmgb1-rs10 Hmg1-rs10 - - high mobility group box 1, related sequence 10 pseudo 68626 Mm.157711 NM_023479 ENSMUSG00000020549 Elac2 1110017O07Rik|D11Wsu80e|Hpc2 - 11 B3|11 40.42 cM elaC ribonuclease Z 2 protein-coding 66266 Mm.156440 NM_025456 ENSMUSG00000054302 Eapp 1810011O16Rik - 12|12 C1 E2F-associated phosphoprotein protein-coding 257928 Olfr844 MOR153-3 - 9|9 A2 olfactory receptor 844 protein-coding 12703 Mm.130 NM_009896 ENSMUSG00000038037 Socs1 Cish1|Cish7|JAB|SOCS-1|SSI-1 - 16 A1|16 5.81 cM suppressor of cytokine signaling 1 protein-coding 15018 Mm.431282 NM_010394 ENSMUSG00000060550 H2-Q7 H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7 - 17 B1|17 18.67 cM histocompatibility 2, Q region locus 7 protein-coding 105243128 XR_870160 Gm39134 - - 8 A1.1|8 predicted gene, 39134 ncRNA 62867 D11Mit287 - - 11 56.1 cM DNA segment, Chr 11, Massachusetts Institute of Technology 287 unknown 223920 Mm.358862 NM_146064 ENSMUSG00000023045 Soat2 ACAT2|D15Wsu97e - 15 F2|15 57.33 cM sterol O-acyltransferase 2 protein-coding 100039489 Hmgn2-ps1 Hmgn4 - 5 E1|5 high mobility group nucleosomal binding domain 2, pseudogene 1 pseudo 20758 Mm.87820 NM_011470 ENSMUSG00000042212 Sprr2d - - 3 F1|3 40.14 cM small proline-rich protein 2D protein-coding 75444 Mm.482900 NM_029290 ENSMUSG00000058925 1700011I03Rik 4930583I06Rik - 18|18 D3 RIKEN cDNA 1700011I03 gene protein-coding 102641642 XR_877866 Gm38568 - - 19 C3|19 predicted gene, 38568 ncRNA 27997 D4Wsu139e - - - DNA segment, Chr 4, Wayne State University 139, expressed unknown 102641625 XR_876074 Gm15802 - - 16 B4|16 26.87 cM predicted gene 15802 ncRNA 14284 Mm.24684 NM_008037 ENSMUSG00000029135 Fosl2 Fra-2 - 5 B1|5 17.33 cM fos-like antigen 2 protein-coding 100041979 Mm.445930 NM_001162910 ENSMUSG00000094942 Gm3604 - - 13 B3|13 predicted gene 3604 protein-coding 64113 Mm.291222 NM_022323 ENSMUSG00000096458 Moap1 AA987038|Map-1|Pnma4 - 12|12 E modulator of apoptosis 1 protein-coding 69400 1700025A08Rik - - 5|5 RIKEN cDNA 1700025A08 gene protein-coding 105245999 XR_875504 Gm41366 - - 15 E1|15 predicted gene, 41366 ncRNA 109404 Sbw2 - - 4 43.34 cM splenomegaly-NZB x NZW 2 unknown 100041065 Gm3121 - - 9|9 E4 ubiquitin-conjugating enzyme E2 variant 1 pseudogene pseudo 100113364 Mm.449738 NR_003681 ENSMUSG00000093413 Snora15 MBI-79 - 5 G1.3|5 small nucleolar RNA, H/ACA box 15 snoRNA 627987 Gm6820 EG627987 - 7|7 B3 predicted gene 6820 pseudo 545007 Mm.449725 NM_001029930 ENSMUSG00000096775 Gm5796 - - 14 A1|14 predicted gene 5796 protein-coding 102638247 Gm34856 - - 17|17 predicted gene, 34856 ncRNA 100035209 Lmrq3 - - - Leishmania major resistance QTL 3 unknown 105246395 XR_877294 Gm41687 - - 18 B1|18 predicted gene, 41687 ncRNA 61462 D6Mit199 - - 6 69.34 cM DNA segment, Chr 6, Massachusetts Institute of Technology 199 unknown 102634725 XR_382222 Gm32243 - - 13 A3.3|13 predicted gene, 32243 ncRNA 102633588 LOC102633588 - - 17 B1 non-histone chromosomal protein HMG-14-like pseudo 11858 Mm.378883 NM_009708 ENSMUSG00000001313 Rnd2 Arhn|Rohn|rho7 - 11|11 D Rho family GTPase 2 protein-coding 100124560 Vmn2r-ps64 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 64 pseudo 102634027 XR_382099 Gm31711 - - 13 A1|13 predicted gene, 31711 ncRNA 105245110 XR_871463 Gm40604 - - 10 A2|10 predicted gene, 40604 ncRNA 102638115 XR_383312 Gm34754 - - 14 A3|14 predicted gene, 34754 ncRNA 100035360 Skmw17 - - 11 32.13 cM skeletal muscle weight 17 unknown 102639929 XR_881804 Gm36127 - - 7 A1|7 predicted gene, 36127 ncRNA 105245314 Gm40789 - - 10|10 predicted gene, 40789 ncRNA 75871 Mm.180410 NM_029468 ENSMUSG00000031728 Zfp821 4930566A11Rik|Znf821 - 8|8 D3 zinc finger protein 821 protein-coding 94089 Mm.390335 NM_053166 ENSMUSG00000040350 Trim7 AI790312 - 11|11 B1.2 tripartite motif-containing 7 protein-coding 102632141 XR_376095 Gm30294 - - 3 G3|3 predicted gene, 30294 ncRNA 669306 Gm9450 - - 11 A4|11 mediator complex subunit 29 pseudogene pseudo 94353 Mm.244426 NM_026122 ENSMUSG00000066456 Hmgn3 1110002A15Rik|6330514M13Rik|BB071015|TRIP7 - 9|9 E2 high mobility group nucleosomal binding domain 3 protein-coding 26931 Mm.240396 NM_012023 ENSMUSG00000017843 Ppp2r5c 2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044 - 12 F1|12 60.56 cM protein phosphatase 2, regulatory subunit B', gamma protein-coding 112232 Bts1 - - 2 73.8 cM bladder tumor susceptibility 1 unknown 70178 Mm.23914 NM_133722 ENSMUSG00000038459 Abhd17c 2210412D01Rik|AL023007|Fam108c|Fam108c1 - 7|7 D3 abhydrolase domain containing 17C protein-coding 62647 D14Mit159 - - 14 35.98 cM DNA segment, Chr 14, Massachusetts Institute of Technology 159 unknown 258495 Mm.339498 NM_146502 ENSMUSG00000057654 Olfr328 MOR275-2 - 11|11 B1.3 olfactory receptor 328 protein-coding 14421 Mm.386762 NM_008080 ENSMUSG00000006731 B4galnt1 4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2 - 10 D3|10 74.5 cM beta-1,4-N-acetyl-galactosaminyl transferase 1 protein-coding 105245796 Gm41187 - - 14|14 predicted gene, 41187 ncRNA 100044319 LOC100044319 - - 3|3 LysM, putative peptidoglycan-binding, domain containing 1-like protein-coding 102640384 Mm.436784 Gm36455 - - 16|16 predicted gene, 36455 ncRNA 240334 Mm.234457 NM_172832 ENSMUSG00000024579 Pcyox1l BC060677|C630049M13 - 18|18 E1 prenylcysteine oxidase 1 like protein-coding 14232 Mm.141864 NM_010223 ENSMUSG00000019428 Fkbp8 38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38 - 8|8 B3.3 FK506 binding protein 8 protein-coding 116704 Lfp1 - - 19 51.76 cM long free running period 1 unknown 17739 TrnP - - - tRNA tRNA 53157 2c4d6HYACC - - - DNA segment, 2c4d6HYACC unknown 619677 Mm.396622 NR_033593 ENSMUSG00000086377 4930529C04Rik - - 3|3 F1 zinc finger, BED domain containing 4 pseudogene pseudo 77967 A930036I15Rik - - 3|3 RIKEN cDNA A930036I15 gene protein-coding 66165 Mm.389983 NM_025392 ENSMUSG00000030983 Bccip 1110013J05Rik|TOK-1 - 7|7 F3 BRCA2 and CDKN1A interacting protein protein-coding 68481 Mm.46438 NM_001001880 ENSMUSG00000026566 Mpzl1 1110007A10Rik|PZR - 1|1 H2.3 myelin protein zero-like 1 protein-coding 71831 Mm.443238 NM_027944 ENSMUSG00000031620 Iqcm 1700007B14Rik - 8|8 C1 IQ motif containing M protein-coding 27694 D13Rp4 - - - DNA segment, Chr 13, Roswell Park 4 unknown 192120 Mm.29808 NM_138653 ENSMUSG00000028392 Bspry - - 4|4 B3 B-box and SPRY domain containing protein-coding 668381 Mm.350857 NM_001310633 ENSMUSG00000101520 Scgb1b12 Abpa12|EG668381|Gm9140 - 7|7 B1 secretoglobin, family 1B, member 12 protein-coding 111055 Rrm2-ps3 - - - ribonucleotide reductase M2 pseudogene 3 pseudo 85229 D17Mit241 - - 17 45.98 cM DNA Segment, Chr 17, Massachusetts Institute of Technology 241 unknown 100035887 Zolw1 - - 11 25.18 cM zolpidem withdrawal 1 unknown 68980 Mm.159860 NM_026898 ENSMUSG00000022787 Wdr53 1500002B03Rik|AI848860 - 16|16 B2 WD repeat domain 53 protein-coding 105243530 XR_880255 Gm39424 - - 11 E1|11 predicted gene, 39424 ncRNA 231600 Mm.30264 NM_172717 ENSMUSG00000014668 Chfr 5730484M20Rik|C230082M18|RNF116 - 5|5 F checkpoint with forkhead and ring finger domains protein-coding 217151 Mm.277896 NM_207231 ENSMUSG00000038352 Arl5c Arl12|BC065791 - 11|11 D ADP-ribosylation factor-like 5C protein-coding 101685 Mm.155687 NM_175318 ENSMUSG00000049516 Spty2d1 5830435K17Rik|AI852426|P16H6 - 7|7 B3 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) protein-coding 100415951 Gm17834 - - 6|6 B2.3 septin 7 pseudogene pseudo 28017 Mm.3635 D7Wsu130e - - 7 F1|7 DNA segment, Chr 7, Wayne State University 130, expressed unknown 606512 Gm6049 EG606512|Hn1-ps4 - 13|13 A4 hematological and neurological expressed 1 pseudogene 4 pseudo 111065 Odc-rs1 BRS-1|Odc-1 - - ornithine decarboxylase, related sequence 1 pseudo 360116 D17Jcs117 - - - DNA segment, Chr 17, John C. Schimenti 117 unknown 100526554 NR_037265 ENSMUSG00000095222 Mir467a-9 mmu-mir-467a-9 - 2 A1|2 8.22 cM microRNA 467a-9 ncRNA 102637894 XR_383943 Gm34590 - - 15 B3.1|15 predicted gene, 34590 ncRNA 100036453 Tmc1m2 - - - Tmc1 modifier 2 unknown 27667 D11Moh20 - - - DNA segment, Chr 11, KL Mohlke 20 unknown 66770 Mm.136954 NR_033783 ENSMUSG00000115008 4933429O19Rik 1700031B11Rik - 14|14 C1 RIKEN cDNA 4933429O19 gene ncRNA 258803 Mm.223230 NM_146807 ENSMUSG00000096840 Olfr136 MOR256-7 - 17|17 B1 olfactory receptor 136 protein-coding 108167839 Gm46247 - - 1 H2.1|1 predicted gene, 46247 pseudo 100503674 Mm.488319 Gm19825 - - 18|18 45.8 cM predicted gene, 19825 unknown 14693 Mm.30141 NM_010312 ENSMUSG00000029713 Gnb2 Gnb-2 - 5 G2|5 76.54 cM guanine nucleotide binding protein (G protein), beta 2 protein-coding 100504002 Gm20008 - - 17|17 A3.3 zinc finger protein 945 pseudogene pseudo 100416227 Gm17983 - - 7|7 B3 ribosomal protein S8 pseudogene pseudo 111691 Iapt6 - - - intracisternal A particle, tumor specific 6 other 53679 DYByu4 D0Byu4 - - DNA segment, Chr Y, Brigham Young University 4 unknown 100038563 Mm.483446 Gm10295 - - - predicted gene 10295 unknown 53093 232b10F - - - DNA segment, 232b10F unknown 111450 Mtv38 Mtv-38 - - mammary tumor virus locus 38 other 492932 Tshp6 QTL-TSH4.2 - 4 61.67 cM tooth shape 6 unknown 100093657 Trnap-cgg - - - transfer RNA proline (anticodon CGG) tRNA 62466 D15Mit262 - - 15 41.61 cM DNA Segment, Chr 15 Massachusetts Institute of Technology 262 unknown 100418100 Gm19000 - - 16|16 C1.3 NSA2 ribosome biogenesis homolog pseudogene pseudo 100034789 Bwq6 - - 9 60.68 cM body weight, QTL 6 unknown 98011 C77872 - - - expressed sequence C77872 protein-coding 268980 Mm.311915 NM_011500 ENSMUSG00000024077 Strn AU022939|D130055P19 - 17|17 E3 striatin, calmodulin binding protein protein-coding 110599 Fdpsl10 - - - farnesyl diphosphate synthetase-like 10 protein-coding 108167656 LOC108167656 - - 9 B 60S ribosomal protein L37 pseudogene pseudo 100036356 Ntta1 - - 1 9.9 cM neurotensin transcript abundance 1 unknown 102634037 XR_383260 Gm31720 - - 14 A3|14 predicted gene, 31720 ncRNA 223433 Mm.266485 NM_198301 ENSMUSG00000056069 Fam105a 9830126M18 - 15|15 B1 family with sequence similarity 105, member A protein-coding 111549 Pmv33 Pmv-33 - - polytropic murine leukemia virus 33 other 223825 Mm.159281 NM_001166066 ENSMUSG00000022155 Mroh2b 4930455B06Rik|Heatr7b2|SPIF - 15|15 A1 maestro heat-like repeat family member 2B protein-coding 269859 Gm5052 EG269859 - 7 A1|7 protein tyrosine phosphatase 4a1 pseudogene pseudo 61852 D1Mit396 - - 1 65.26 cM DNA segment, Chr 1, Massachusetts Institute of Technology 396 unknown 665389 Mm.335214 NM_001101600 Gm7616 EG665389 - 9|9 B predicted gene 7616 protein-coding 21873 Mm.104744 NM_011597 ENSMUSG00000024812 Tjp2 ZO-2 - 19|19 B tight junction protein 2 protein-coding 111820 Iapls1-38 - - - intracisternal A particle, lymphocyte specific 1-38 other 66379 Mm.5265 NM_183256 ENSMUSG00000023020 Cox14 2310016M24Rik|AA959804 - 15|15 F1 cytochrome c oxidase assembly protein 14 protein-coding 100125273 Vmn2r-ps12 - - 3|3 E1 vomeronasal 2, receptor, pseudogene 12 pseudo 110376 Tpm3-rs3 - - 6 C1|6 30.56 cM tropomyosin 3, related sequence 3 pseudo 224823 Mm.45101 NM_144857 ENSMUSG00000023971 Rrp36 - - 17|17 C ribosomal RNA processing 36 homolog (S. cerevisiae) protein-coding 100502880 XM_017315679 Gm19428 - - 13 B3|13 34.48 cM predicted gene, 19428 protein-coding 102632094 XR_386174 Gm30259 - - 18 B3|18 predicted gene, 30259 ncRNA 102635003 XR_382256 Gm32448 - - 13 A3.3|13 predicted gene, 32448 ncRNA 100628599 NR_039592 ENSMUSG00000092901 Mir5130 mir-5130|mmu-mir-5130|mu-mir-5130 - 14 E2.3|14 51.55 cM microRNA 5130 ncRNA 21262 T(7;16)67H T67H - - reciprocal translocation, Chr 7 and 16, Harwell 67 other 102640492 XR_379561 Gm36538 - - 9 C|9 predicted gene, 36538 ncRNA 113869 Vmn1r-ps25 V1r-ps1 - 6|6 D1 vomeronasal 1 receptor, pseudogene 25 pseudo 100416743 Gm18222 - - 6|6 A1 zinc finger protein 384 pseudogene pseudo 101055867 Gm29736 - - 3 G1|3 predicted gene, 29736 pseudo 112163557 Mm.20866 AA413147 - - - expressed sequence AA413147 protein-coding 69433 Mm.23366 NR_038039 ENSMUSG00000100000 1700023F02Rik AV205046 - 10|10 B5.1 RIKEN cDNA 1700023F02 gene ncRNA 328825 XM_017317766 ENSMUSG00000091742 Gm5093 EG328825 - 17|17 C predicted gene 5093 protein-coding 52244 D5Ertd159e - - 5 65.34 cM DNA segment, Chr 5, ERATO Doi 159, expressed unknown 215854 Mm.377236 NM_001009574 ENSMUSG00000069706 Taar5 Gm227|taR-5 - 10|10 A4 trace amine-associated receptor 5 protein-coding 320195 Mm.482710 9630041I06Rik - - 18|18 RIKEN cDNA 9630041I06 gene protein-coding 105246097 XR_876007 Gm41440 - - 16 B2|16 predicted gene, 41440 ncRNA 102638724 XR_383581 Gm35218 - - 14 D2|14 predicted gene, 35218 ncRNA 102636966 Gm33891 - - 17|17 predicted gene, 33891 ncRNA 100034861 Rrodp1 - - 1 77.05 cM rotarod performance 1 unknown 20963 Mm.375031 NM_011518 ENSMUSG00000021457 Syk Sykb - 13 A5|13 27.41 cM spleen tyrosine kinase protein-coding 100039864 Mm.258912 NR_029468 ENSMUSG00000086290 Snhg12 2310005L22Rik - 4|4 D2.3 small nucleolar RNA host gene 12 ncRNA 235559 Mm.259893 NM_176979 ENSMUSG00000032555 Topbp1 1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259 - 9|9 F1 topoisomerase (DNA) II binding protein 1 protein-coding 102635997 LOC102635997 - - 4 D2.2 60S ribosomal protein L21 pseudogene pseudo 245511 Mm.391261 NM_001033880 ENSMUSG00000035387 4930415L06Rik Ppp4r3c|Ppp4r3cp|Smek3p - X|X C1 RIKEN cDNA 4930415L06 gene protein-coding 105245876 Mm.128197 NR_155428 Gm41259 - - 15 A1|15 predicted gene, 41259 ncRNA 93911 D16Jhu49 151A24.T7 - - DNA segment, Chr 16, Johns Hopkins University 49 unknown 433415 Mm.359309 XM_006498497 ENSMUSG00000079497 Gm13420 Dspd2 - 2|2 B predicted gene 13420 protein-coding 20706 Mm.45371 NM_011452 ENSMUSG00000021403 Serpinb9b 1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin - 13 A3.2|13 13.79 cM serine (or cysteine) peptidase inhibitor, clade B, member 9b protein-coding 16871 Mm.386765 NM_010711 ENSMUSG00000026934 Lhx3 Lim3|P-LIM|mLIM3|mLim-3 - 2 A3|2 18.44 cM LIM homeobox protein 3 protein-coding 244214 Gm4973 EG244214 - 7 F3|7 guanosine diphosphate (GDP) dissociation inhibitor 2 pseudogene pseudo 100038609 Mm.436926 Gm10441 - - - predicted gene 10441 protein-coding 105243213 XR_870505 Gm39194 - - 8 B3.3|8 predicted gene, 39194 ncRNA 102465542 NR_105865 ENSMUSG00000098288 Mir6900 Gm27708|mmu-mir-6900 - 1|1 D microRNA 6900 ncRNA 108445 Xmmv70 Xmmv-70|Xp-29 - - xenotropic-MCF leukemia virus 70 other 102631767 XR_391281 Gm38439 - - 7 B2|7 predicted gene, 38439 ncRNA 105244116 Gm39788 - - 2|2 predicted gene, 39788 ncRNA 75854 Mm.417810 NR_131033 ENSMUSG00000114895 4930579J19Rik - - 13|13 A3.3 RIKEN cDNA 4930579J19 gene ncRNA 62721 D18Mit138 - - 18 28.33 cM DNA segment, Chr 18, Massachusetts Institute of Technology 138 unknown 85217 D18Mit106 - - 18 52.29 cM DNA segment, Chr 18, Massachusetts Institute of Technology 106 unknown 100035764 Pltpq3 - - - phospholipid transfer protein activity QTL 3 unknown 18805 Mm.212039 NM_008875 ENSMUSG00000027695 Pld1 AA536939|C85393|Pld1a|Pld1b|mPLD1 - 3 A3|3 11.15 cM phospholipase D1 protein-coding 621835 Gm6264 - - 1 C5|1 predicted gene 6264 pseudo 67922 Mm.28327 NM_026455 ENSMUSG00000003039 Fam32a 2510049I19Rik|AW822030|OTAG-12|Otag12 - 8|8 B3.3 family with sequence similarity 32, member A protein-coding 72925 Mm.380457 NM_175188 ENSMUSG00000036469 March1 2900024D24Rik|BB085186 - 8|8 B3.1 membrane-associated ring finger (C3HC4) 1 protein-coding 216394 Gm4801 EG216394 - 10|10 D2 predicted gene 4801 protein-coding 74403 Mm.444291 NR_015540 4933400F21Rik 1700091C04Rik|4930565K10Rik - 1|1 D RIKEN cDNA 4933400F21 gene ncRNA 102631799 Gm30045 - - Y|Y predicted gene, 30045 ncRNA 102635295 XR_387689 Gm32672 - - 5 F|5 predicted gene, 32672 ncRNA 100303747 Mm.453534 NR_028480 ENSMUSG00000087342 Gm12238 Mbi-39 - 11|11 B1.3 predicted gene 12238 snoRNA 74688 Mm.159298 NR_073360 ENSMUSG00000109215 4930453L07Rik - - 8|8 A1.1 RIKEN cDNA 4930453L07 gene ncRNA 102467494 n-TCgca18 n-Tc18 - 11 D|11 nuclear encoded tRNA cysteine 18 (anticodon GCA) tRNA 67689 Mm.109341 NM_026316 ENSMUSG00000024885 Aldh3b1 1700001N19Rik|ALDH4|ALDH7 - 19|19 A aldehyde dehydrogenase 3 family, member B1 protein-coding 51800 Mm.3295 NM_016778 ENSMUSG00000026278 Bok matador|mtd - 1|1 D BCL2-related ovarian killer protein-coding 387356 Mm.377917 NM_207030 ENSMUSG00000057699 Tas2r131 T2R31|Tas2r31|mGR31|mt2r61 - 6 G1|6 64.03 cM taste receptor, type 2, member 131 protein-coding 78798 Mm.295565 NM_199466 ENSMUSG00000032624 Eml4 4930443C24Rik|AI644019 - 17|17 E4 echinoderm microtubule associated protein like 4 protein-coding 61950 D6Mit331 - - 6 59.15 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 331 unknown 15401 Mm.439647 NM_008265 ENSMUSG00000000942 Hoxa4 AV206827|Hox-1.4 - 6 B3|6 25.4 cM homeobox A4 protein-coding 108168753 XR_001783298 Gm46739 - - 2 C1.1|2 predicted gene, 46739 ncRNA 671842 Gm13754 - - 1|1 C2 predicted gene 13754 pseudo 210044 Mm.390617 NM_153534 ENSMUSG00000021536 Adcy2 mKIAA1060 - 13 B3|13 35.55 cM adenylate cyclase 2 protein-coding 227835 Mm.314312 NM_172662 ENSMUSG00000036890 Gtdc1 E330008O22Rik - 2|2 B glycosyltransferase-like domain containing 1 protein-coding 53778 D17Leh27 D17Tu27 - - DNA segment, Chr 17, Lehrach 27 unknown 76505 Mm.23023 NR_037697 ENSMUSG00000068099 1500009C09Rik - - 15|15 E1 RIKEN cDNA 1500009C09 gene ncRNA 665333 Gm7591 EG665333 - 14|14 A3 predicted gene 7591 pseudo 52692 D16Ertd803e - - - DNA segment, Chr 16, ERATO Doi 803, expressed unknown 14149 Mm.4719 NM_007997 ENSMUSG00000018861 Fdxr AR - 11|11 E2 ferredoxin reductase protein-coding 53859 Mm.158981 NM_016896 ENSMUSG00000020941 Map3k14 Nik|aly - 11 E1|11 66.8 cM mitogen-activated protein kinase kinase kinase 14 protein-coding 16364 Mm.4677 NM_013674 ENSMUSG00000021356 Irf4 AI385587|IRF-4|LSIRF|NF-EM5|Spip - 13|13 A3.2 interferon regulatory factor 4 protein-coding 433586 Mm.234972 NM_001004176 ENSMUSG00000061143 Maml3 AV234550|BC049812|Mam-2|mKIAA1816 - 3|3 C mastermind like transcriptional coactivator 3 protein-coding 102638038 Mm.360282 NR_132434 Gm15631 - - 6 E1|6 48.93 cM predicted gene 15631 ncRNA 111681 Iapt8 - - - intracisternal A particle, tumor specific 8 other 67186 Mm.380435 NM_026020 ENSMUSG00000025508 Rplp2 2700049I22Rik - 7|7 F5 ribosomal protein, large P2 protein-coding 109279894 LOC109279894 Mm67 - - VISTA enhancer mm67 biological-region 69162 Mm.18634 NM_026969 ENSMUSG00000035325 Sec31a 1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1 - 5|5 E4 Sec31 homolog A (S. cerevisiae) protein-coding 102632580 XR_380234 Gm30618 - - 10 A4|10 predicted gene, 30618 ncRNA 75476 Mm.491752 NR_040587 ENSMUSG00000100010 1700010I02Rik - - 3|3 A1 RIKEN cDNA 1700010I02 gene ncRNA 102635800 XR_388793 Gm33048 - - 11 B3|11 predicted gene, 33048 ncRNA 112242 Bhr4 - - - bronchial hyperresponsiveness 4 unknown 100417508 Gm18656 - - 9|9 A4 voltage-dependent anion channel 1 pseudogene pseudo 108423 Xmmv33 Env-33|Xmmv-33 - - xenotropic-MCF leukemia virus 33 other 13327 Del(8)74H Del74H - - deletion, Chr 8, Harwell 74 other 102639932 XR_376066 Gm36130 - - 3 G3|3 predicted gene, 36130 ncRNA 723922 NR_030150 ENSMUSG00000070099 Mir466 Mirn466|mmu-mir-466 - 2|2 A1 microRNA 466 ncRNA 110048 Kifc4b - - - kinesin family member C4B protein-coding 666168 Mm.482086 NM_201640 ENSMUSG00000028712 Cyp4a31 - - 4|4 D1 cytochrome P450, family 4, subfamily a, polypeptide 31 protein-coding 100502764 Mm.437219 NR_045728 ENSMUSG00000097633 Gm16617 - - 14 C2|14 26.75 cM predicted gene, 16617 ncRNA 100124574 Vmn2r-ps140 - - Y|Y A1 vomeronasal 2, receptor, pseudogene 140 pseudo 102638569 Gm35103 - - 19|19 predicted gene, 35103 pseudo 105243685 XR_878113 Gm39515 - - X A6|X predicted gene, 39515 ncRNA 61690 D6Mit245 - - 6 32.4 cM DNA segment, Chr 6, Massachusetts Institute of Technology 245 unknown 258918 Mm.377748 NM_146916 ENSMUSG00000054938 Olfr1346 MOR103-6 - 7|7 A1 olfactory receptor 1346 protein-coding 102638448 XR_877772 LOC102638448 - - 19 B 40S ribosomal protein S7 pseudogene pseudo 111420 Mtv29 Mtv-29 - - mammary tumor virus locus 29 other 102638827 Mm.487538 XR_882304 ENSMUSG00000087369 Gm14696 - - X A5|X 25.9 cM predicted gene 14696 ncRNA 671439 Gm9535 - - 10|10 A2 ribosomal protein L7A pseudogene pseudo 71234 Mm.158627 NR_045853 ENSMUSG00000033015 4933427E13Rik - - 11|11 A3.2 RIKEN cDNA 4933427E13 gene ncRNA 102636002 XR_382499 Gm33197 - - 13 B1|13 predicted gene, 33197 ncRNA 258056 Mm.376119 NM_001011815 ENSMUSG00000056883 Olfr533 MOR252-3P - 7|7 F4 olfactory receptor 533 protein-coding 74361 Mm.159169 NM_183104 ENSMUSG00000056617 4931429L15Rik - - 9|9 A5.2 RIKEN cDNA 4931429L15 gene protein-coding 666640 Gm13137 - - 4|4 E1 predicted gene 13137 pseudo 110120377 LOC110120377 - - - VISTA enhancer mm474 biological-region 111558 Pmv62 Pmv-62 - - polytropic murine leukemia virus 62 other 195018 Mm.272030 NM_001045536 ENSMUSG00000055670 Zzef1 8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399 - 11|11 B4 zinc finger, ZZ-type with EF hand domain 1 protein-coding 105243117 XR_870129 ENSMUSG00000109064 Gm39128 Gm44517 - 8 A1.1|8 predicted gene, 39128 ncRNA 111886 Iap5ra7 - - - intracisternal A-type particle, U5 region, SINE repeat a-7 other 433023 Mm.483302 NR_015373 ENSMUSG00000110573 Gm5485 EG433023 - 16|16 B5 predicted gene 5485 ncRNA 100861896 Gm21308 - - Y|Y predicted gene, 21308 protein-coding 383318 Gm5234 Cct7-2p|EG383318 - 18|18 E4 chaperonin containing Tcp1, subunit 7 (eta) pseudogene pseudo 102634162 XR_384779 ENSMUSG00000115869 Gm31814 - - 16 B1|16 predicted gene, 31814 ncRNA 70292 Mm.125167 NM_027373 ENSMUSG00000029094 Afap1 2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018 - 5|5 B3 actin filament associated protein 1 protein-coding 105246756 XR_878677 Gm41998 - - 3 A1|3 predicted gene, 41998 ncRNA 433332 Mm.122412 NM_001007586 Gm9991 EG433332 - 1 D|1 predicted gene 9991 unknown 102638939 XR_376457 Gm35379 - - 4 C6|4 predicted gene, 35379 ncRNA 239849 Mm.445045 NM_207244 ENSMUSG00000062082 Cd200r4 F630107N04Rik|MCD200RLa - 16|16 B4 CD200 receptor 4 protein-coding 791072 NR_030422 ENSMUSG00000076120 Mir551b Mirn551b|mir-551b - 3 A3|3 microRNA 551b ncRNA 102640992 Gm21838 - - Y|Y predicted gene, 21838 protein-coding 68971 Mm.24937 NM_026894 ENSMUSG00000030316 Tamm41 1500001M20Rik|TAM41 - 6|6 E3 TAM41 mitochondrial translocator assembly and maintenance homolog protein-coding 252972 Mm.114054 NM_145853 ENSMUSG00000032741 Tpcn1 5730403B01Rik|Tpc1|mKIAA1169 - 5|5 F two pore channel 1 protein-coding 100093687 Trnar-ucu - - - transfer RNA arginine (anticodon UCU) tRNA 100504199 Gm20108 - - 10|10 36.68 cM putative 60S ribosomal protein L39-like 5-like pseudo 102465217 NR_105830 ENSMUSG00000099321 Mir6404 Gm28014|mmu-mir-6404 - 7|7 F5 microRNA 6404 ncRNA 72635 Mm.289796 NM_152815 ENSMUSG00000053091 Lins1 2700083B01Rik|AW547219|Lins|Lins2|Wins2 - 7|7 C lines homolog 1 protein-coding 100416138 Gm17936 - - 5|5 A1 calponin 3, acidic pseudogene pseudo 100042944 Mm.380300 NM_001242953 ENSMUSG00000099443 H2al1h Gm14478 - X A1.1|X H2A histone family member L1H protein-coding 258434 Mm.377499 NM_146442 ENSMUSG00000057424 Olfr934 MOR224-6 - 9|9 A5.1 olfactory receptor 934 protein-coding 100534381 Gm21049 - - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide B36 pseudogene pseudo 105243006 XR_869814 Gm39055 - - 7 E1|7 predicted gene, 39055 ncRNA 100035834 Trglyd - - 1 80.33 cM triglycerides unknown 100526511 NR_037295 ENSMUSG00000093241 Mir3108 mir-3108|mmu-mir-3108 - 8 D3|8 56.19 cM microRNA 3108 ncRNA 100502967 Mm.425235 NM_001281511 ENSMUSG00000073208 Speer4c 4933431D05Rik|SPEER-4C - 5 A2|5 6.52 cM spermatogenesis associated glutamate (E)-rich protein 4C protein-coding 100499519 NR_037302 ENSMUSG00000093912 Mir3470b mmu-mir-3470b - 16 B4|16 28.44 cM microRNA 3470b ncRNA 102640749 Mm.182366 XR_374182 Gm13398 Dbhos - 2 A3|2 19.19 cM predicted gene 13398 ncRNA 102632017 XM_006541364 Gm30196 - - 7 B5|7 predicted gene, 30196 protein-coding 214084 Mm.268797 NM_172523 ENSMUSG00000025094 Slc18a2 1110037L13Rik|9330105E13|Vmat2 - 19 D3|19 54.64 cM solute carrier family 18 (vesicular monoamine), member 2 protein-coding 102632854 Mm.406645 XR_385543 Gm17115 - - 17 B1|17 17.96 cM predicted gene 17115 ncRNA 236749 Mm.296422 NM_001034864 ENSMUSG00000068113 Gm4907 EG236749 - X A2|X predicted gene 4907 protein-coding 258084 Olfr1103-ps1 MOR206-5P - 2|2 D olfactory receptor 1103, pseudogene 1 pseudo 100126089 Mtbcq3 - - - multiple trait body composition QTL 3 unknown 404290 Mm.377932 NM_207547 ENSMUSG00000096164 Vmn1r93 V1rd21 - 7|7 A3 vomeronasal 1 receptor 93 protein-coding 73783 4930422G07Rik - - 9|9 RIKEN cDNA 4930422G07 gene protein-coding 269523 Mm.245976 NM_009503 ENSMUSG00000028452 Vcp 3110001E05|CDC48|p97|p97/VCP - 4 A5|4 22.95 cM valosin containing protein protein-coding 105242446 Gm20474 100042923|Gm38711|Gm4109 - 12|12 predicted gene 20474 protein-coding 71773 Mm.26741 NM_152811 ENSMUSG00000035836 Ugt2b1 1300012D20Rik - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide B1 protein-coding 106794 Mm.12412 NM_198942 ENSMUSG00000035051 Dhx57 AW494914 - 17|17 E3 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 protein-coding 70620 Mm.235407 NM_023585 ENSMUSG00000022674 Ube2v2 1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2 - 16|16 A2 ubiquitin-conjugating enzyme E2 variant 2 protein-coding 100417394 Gm18588 - - 3|3 E1 oxysterol binding protein-like 9 pseudogene pseudo 72045 Mm.235981 NM_001163503 ENSMUSG00000039339 Mfsd4b2 2010001E11Rik|Naglt1b - 10|10 B1 major facilitator superfamily domain containing 4B2 protein-coding 18569 Mm.1605 NM_011050 ENSMUSG00000024975 Pdcd4 D19Ucla1|Ma3|Tis - 19 D2|19 48.73 cM programmed cell death 4 protein-coding 780827 Ighv15-1 - - 12|12 F1 immunoglobulin heavy variable V15-1 pseudo 108168786 XR_001783443 Gm46758 - - 2 E5|2 predicted gene, 46758 ncRNA 12649 Mm.16753 NM_007691 ENSMUSG00000032113 Chek1 C85740|Chk1|rad27 - 9|9 A4 checkpoint kinase 1 protein-coding 625931 XM_017321869 Gm6637 EG625931 - 6|6 F1 predicted gene 6637 protein-coding 18307 Mm.377101 NM_206822 ENSMUSG00000100923 Olfr10 GA_x6K02T2QP88-6117098-6116163|L45|MOR256-55 - 11|11 B1.2 olfactory receptor 10 protein-coding 62160 D14Mit56 - - 14 22.36 cM DNA segment, Chr 14, Massachusetts Institute of Technology 56 unknown 27809 565I03R - - - DNA segment, 565I03R (Research Genetics) unknown 16011 Mm.405761 NM_010518 ENSMUSG00000026185 Igfbp5 AI256729|AW208790|IGFBP-5|IGFBP-5P - 1 C3|1 36.94 cM insulin-like growth factor binding protein 5 protein-coding 11815 Mm.2082 NM_007470 ENSMUSG00000022548 Apod - - 16 B2|16 21.41 cM apolipoprotein D protein-coding 96961 C77609 - - - expressed sequence C77609 unknown 18729 Mm.326531 NM_008848 Pira6 12M1|Pira10|p91B - 7|7 A1 paired-Ig-like receptor A6 protein-coding 67467 Mm.260767 NM_026177 ENSMUSG00000022008 Gpalpp1 1200011I18Rik|Kiaa1704 - 14|14 D3 GPALPP motifs containing 1 protein-coding 271047 Mm.120265 NM_173024 ENSMUSG00000066364 Serpina3b 6A1|A030003A19Rik - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 3B protein-coding 102631563 Gm21851 - - Y|Y predicted gene, 21851 protein-coding 11449 Mm.2810 NM_009604 ENSMUSG00000026253 Chrng Achr-3|Acrg - 1 C5|1 44.07 cM cholinergic receptor, nicotinic, gamma polypeptide protein-coding 100416089 Gm17060 - - 6|6 B2.3 nucleophosmin 1 pseudogene pseudo 100040083 Gm20825 - - Y|Y predicted gene, 20825 protein-coding 100270 AU015581 - - - expressed sequence AU015581 unknown 102639441 Gm35755 - - 12 A3|12 predicted gene, 35755 pseudo 105242629 XR_868975 Gm38788 - - 6 B1|6 predicted gene, 38788 ncRNA 328234 Mm.40588 NM_183204 ENSMUSG00000044164 Rnf182 C630023L15Rik - 13|13 A4 ring finger protein 182 protein-coding 625132 Gm12599 - - 11|11 A1 TGF beta-inducible nuclear protein 1 pseudogene pseudo 102632505 XR_389117 Gm30562 - - 11 E2|11 predicted gene, 30562 ncRNA 108167357 LOC108167357 - - 2 E1 60S acidic ribosomal protein P1 pseudogene pseudo 102632023 Gm28603 - - Y|Y predicted gene 28603 protein-coding 108168411 XM_017318325 Gm46650 - - 19 D2|19 predicted gene, 46650 protein-coding 111294 Hmgn2-rs8 Hmg17-rs8 - - high mobility group nucleosomal binding domain 2, related sequence 8 pseudo 16765 Mm.378957 NM_019641 ENSMUSG00000028832 Stmn1 19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn - 4 D3|4 66.76 cM stathmin 1 protein-coding 19504 Rb(16.19)1Bu Rb1Bu - - Robertsonian translocation, Chr 16 and 19, Burdette 1 other 75588 2310074N15Rik - - 5|5 RIKEN cDNA 2310074N15 gene protein-coding 99169 Mm.404938 NM_001033197 AU015228 - - 2|2 F1 expressed sequence AU015228 protein-coding 105244649 XR_872448 LOC105244649 - - 12 A1.1 uncharacterized LOC105244649 ncRNA 69192 Mm.390986 NM_026987 ENSMUSG00000024422 Dhx16 2410006N22Rik|DBP2|Ddx16|mKIAA0577 - 17|17 B1 DEAH (Asp-Glu-Ala-His) box polypeptide 16 protein-coding 634386 Ftl1-ps1 EG665937|Gm10116 - 13 C1|13 ferritin light polypeptide 1, pseudogene 1 pseudo 258774 Mm.377685 NM_146778 ENSMUSG00000075114 Olfr1208 MOR225-4 - 2|2 E1 olfactory receptor 1208 protein-coding 387191 NR_029721 ENSMUSG00000065546 Mir196a-1 Mirn196|Mirn196a-1|miR-196|mir-196a-1 - 11|11 D microRNA 196a-1 ncRNA 100502841 Mm.297782 NM_001195633 ENSMUSG00000039840 Epg5 4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632 - 18|18 E3 ectopic P-granules autophagy protein 5 homolog (C. elegans) protein-coding 56501 Mm.36808 NM_019680 ENSMUSG00000031103 Elf4 AV314029|BC042423|Gm9907|Mef - X|X A5 E74-like factor 4 (ets domain transcription factor) protein-coding 76547 Mm.46529 NM_029649 ENSMUSG00000020921 Tmem101 2610511E22Rik - 11|11 D transmembrane protein 101 protein-coding 108168254 XR_001781731 Gm29666 - - 15 E2|15 predicted gene 29666 ncRNA 105247076 XR_880938 LOC105247076 - - - uncharacterized LOC105247076 ncRNA 100417477 Gm18634 - - 5|5 D heat shock protein 1 (chaperonin) pseudogene pseudo 105244624 Mm.415437 XR_867941 Gm12708 - - 4 C5|4 43.34 cM predicted gene 12708 ncRNA 259021 Mm.389305 NM_147019 ENSMUSG00000075190 Olfr1054 MOR188-2 - 2|2 D olfactory receptor 1054 protein-coding 258030 Olfr896-ps1 MOR170-10P - 9|9 A5.1 olfactory receptor 896, pseudogene 1 pseudo 100384881 Gm16071 - - 9 A4|9 16.62 cM ribosomal protein L7A pseudogene pseudo 100417412 Gm18598 - - 7|7 A3 coiled-coil domain containing 15 pseudogene pseudo 235283 Mm.138434 NM_172768 ENSMUSG00000040111 Gramd1b 3222402H23|A930008A22Rik|AI593249|mKIAA1201 - 9|9 A5.1 GRAM domain containing 1B protein-coding 102633156 XM_017319406 ENSMUSG00000078899 LOC102633156 - - 2 H4 zinc finger protein 431-like protein-coding 108168860 XR_001783795 LOC108168860 - - 3 A2-A3 uncharacterized LOC108168860 ncRNA 110754 Igkrs Igk-rs - - immunoglobulin kappa chain recombining segment other 100310872 Mm.381893 NM_001166629 ENSMUSG00000092074 Dynlt1a - - 17 A1|17 dynein light chain Tctex-type 1A protein-coding 102635798 XR_377540 Gm33046 - - 6 B1|6 predicted gene, 33046 ncRNA 208501 Mm.46699 NM_001110242 ENSMUSG00000078572 Ndufaf8 1810043H04Rik - 11|11 E2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8 protein-coding 100504159 Gm20093 - - 2|2 12.9 cM predicted gene, 20093 unknown 100036005 Dbsq2 - - - diabetes susceptibility QTL 2 unknown 102637782 XM_017317735 Gm34507 - - 17 A1|17 predicted gene, 34507 protein-coding 102633885 XR_388211 Gm31603 - - 8 E2|8 predicted gene, 31603 ncRNA 105245988 Gm41356 - - 15|15 predicted gene, 41356 ncRNA 12896 Mm.307620 NM_009949 ENSMUSG00000028607 Cpt2 AI323697|CPTII - 4 C7|4 50.18 cM carnitine palmitoyltransferase 2 protein-coding 68275 Mm.102574 NM_026653 ENSMUSG00000000751 Rpa1 5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa - 11 B5|11 45.79 cM replication protein A1 protein-coding 271786 Mm.330227 NM_173030 ENSMUSG00000060988 Galnt13 A230002A12|A230020F20|BB182356 - 2|2 C1.1 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 111351 Mmv15 Mmv-15 - - MCF endogenous virus 15 other 492827 Babr - - 16 54.31 cM Babesia resistance unknown 52205 D4Ertd179e - - 4 62.77 cM DNA segment, Chr 4, ERATO Doi 179, expressed unknown 100417741 Gm18797 - - Y|Y A1 ubiquitin-activating enzyme E1, Chr Y 1 pseudogene pseudo 110177 His2 His-2 - - hematopoietic insertion site 2 protein-coding 53109 EC100RL - - - DNA segment, EC100RL unknown 114257 Manz2 QTL-C3.1 - - mandible size 2 unknown 675987 Gm9661 - - 12|12 F1 ribosomal protein L3 pseudogene pseudo 100126874 Mm.438087 Gm9928 - - - predicted gene 9928 unknown 100038509 Mm.445169 Gm10544 - - - predicted gene 10544 unknown 52222 Mm.394012 XR_881941 D7Ertd128e Gm29440 - 7 B1|7 DNA segment, Chr 7, ERATO Doi 128, expressed unknown 100036287 Tailq1 Tlq1 - - tail length QTL 1 unknown 102639280 XR_389516 Gm35628 - - 5 F|5 predicted gene, 35628 ncRNA 12212 Mm.42223 NM_009767 ENSMUSG00000031327 Chic1 Brx|Gm10454 - X D|X 46.08 cM cysteine-rich hydrophobic domain 1 protein-coding 21956 Mm.247470 NM_011619 ENSMUSG00000026414 Tnnt2 Tnt|cTnT - 1 E4|1 59.32 cM troponin T2, cardiac protein-coding 100503495 Mm.410762 NR_073014 ENSMUSG00000040705 A930016O22Rik - - 7|7 A3 RIKEN cDNA A930016O22 gene ncRNA 108168913 XR_001784055 Gm46833 - - 3 A3|3 predicted gene, 46833 ncRNA 75638 1700008O09Rik - - 12|12 RIKEN cDNA 1700008O09 gene protein-coding 61669 D6Mit304 - - 6 78.22 cM DNA segment, Chr 6, Massachusetts Institute of Technology 304 unknown 74285 Mm.417843 1700080F18Rik - - 6|6 RIKEN cDNA 1700080F18 gene protein-coding 383770 Gm11449 - - 2|2 H2 predicted gene 11449 pseudo 244859 Mm.119994 NM_172922 ENSMUSG00000032257 Ankk1 9930020N01Rik - 9|9 A5.3 ankyrin repeat and kinase domain containing 1 protein-coding 100034921 Hrtq3 - - - heart weight QTL 3 unknown 14395 Mm.5304 NM_008066 ENSMUSG00000000560 Gabra2 C630048P16Rik|Gabra-2 - 5 C3.1|5 37.59 cM gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2 protein-coding 13112 Mm.332844 NM_007818 ENSMUSG00000056035 Cyp3a11 AI256190|Cyp3a|IIIAm1|Pcn - 5 G2|5 85.17 cM cytochrome P450, family 3, subfamily a, polypeptide 11 protein-coding 97313 C81537 - - - expressed sequence C81537 unknown 320575 Mm.1635 C230057H02Rik - - 3|3 F2.1 RIKEN cDNA C230057H02 gene protein-coding 224650 Mm.32556 NM_181413 ENSMUSG00000024219 Anks1 Anks1a|mKIAA0229 - 17|17 A3.3 ankyrin repeat and SAM domain containing 1 protein-coding 105244236 XR_866556 Gm39880 - - 2 E1|2 predicted gene, 39880 ncRNA 101055888 LOC101055888 - - X A7.3 protein phosphatase 1 regulatory subunit 14B pseudogene pseudo 109912 Ltp - - - liver transport protein protein-coding 102466762 NR_105873 ENSMUSG00000098279 Mir6908 Gm27827|mmu-mir-6908 - 10|10 C1 microRNA 6908 ncRNA 51971 D8Ggc2e - - - DNA segment, Chr 8, G. Consalez 2, expressed unknown 100417596 Gm20949 - - 7|7 A3 RELT tumor necrosis factor receptor pseudogene pseudo 104733 AA536658 - - - expressed sequence AA536658 unknown 102466152 NR_105775 ENSMUSG00000098721 Mir6357 Gm27333|mmu-mir-6357 - 18|18 E2 microRNA 6357 ncRNA 320896 Mm.404042 NR_151530 C330020E22Rik - - 4|4 D2.2 RIKEN cDNA C330020E22 gene ncRNA 102635273 LOC102635273 - - 17 E5 signal recognition particle 19 kDa protein pseudogene pseudo 14164 Mm.241282 NM_010197 ENSMUSG00000036585 Fgf1 Dffrx|Fam|Fgf-1|Fgfa - 18 B3|18 20.74 cM fibroblast growth factor 1 protein-coding 108213 Rbm6-ps2 - - 1|1 F RNA binding motif protein 6, pseudogene 2 pseudo 60361 Mm.33957 NM_021718 ENSMUSG00000056290 Ms4a4b AI463180|Chandra|Ly116 - 19|19 A membrane-spanning 4-domains, subfamily A, member 4B protein-coding 77717 Mm.391998 NR_033803 ENSMUSG00000075408 6030408B16Rik AI225877 - 15|15 F1-F2 RIKEN cDNA 6030408B16 gene ncRNA 258980 Mm.223370 NM_146978 ENSMUSG00000049149 Olfr1258 MOR232-3 - 2|2 E1 olfactory receptor 1258 protein-coding 105246247 XR_876714 Gm16196 - - 17 A3.3|17 15.03 cM predicted gene 16196 ncRNA 74213 Mm.474531 NM_134077 ENSMUSG00000022119 Rbm26 1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2 - 14|14 E2.3 RNA binding motif protein 26 protein-coding 62339 D19Mit86 - - 19 20.99 cM DNA segment, Chr 19, Massachusetts Institute of Technology 86 unknown 243312 Mm.237102 NM_175522 ENSMUSG00000048988 Elfn1 A930017N06Rik|AI197272|Ppp1r28 - 5|5 G2 leucine rich repeat and fibronectin type III, extracellular 1 protein-coding 78807 Mm.78900 4930544L04Rik - - 7|7 F3 RIKEN cDNA 4930544L04 gene unknown 105243719 Gm39533 - - X D|X swi5-dependent recombination DNA repair protein 1 homolog pseudo 108167925 XR_001780321 Gm46294 - - 11 D|11 predicted gene, 46294 protein-coding 23829 Mm.57154 NM_011795 ENSMUSG00000045532 C1ql1 C1qrf|CRF|CTRP14|gliacolin - 11|11 E1 complement component 1, q subcomponent-like 1 protein-coding 665298 Gm11942 - - 4|4 A5 ribosomal protein, large, P1 pseudogene pseudo 100035062 Lgaq4 - - - late growth adjusted QTL 4 unknown 435525 Gm5682 EG435525 - 17|17 B1 predicted gene 5682 pseudo 102631696 Mm.118143 NR_136895 ENSMUSG00000113813 Gm29968 - - 12 A2|12 predicted gene, 29968 ncRNA 100035425 Tbt1 - - - trabecular bone traits 1 unknown 108168875 Gm46808 - - 3 F1|3 eukaryotic translation initiation factor 1 pseudogene pseudo 105245330 XR_872184 Gm40804 - - 10 D3|10 predicted gene, 40804 ncRNA 66864 Mm.280563 NM_025809 ENSMUSG00000045930 Clec14a 1200003C23Rik|AI642649 - 12|12 C1 C-type lectin domain family 14, member a protein-coding 105243175 XR_870395 Gm39167 - - 8 A4|8 predicted gene, 39167 ncRNA 105244927 XR_869819 Gm40449 - - 7 E1|7 predicted gene, 40449 ncRNA 28268 D10Jhu37 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 37 unknown 105242624 XR_868957 Gm38785 - - 6 A3.3|6 predicted gene, 38785 ncRNA 319625 Mm.29098 NM_176963 ENSMUSG00000035473 Galm A530057M15Rik|AU015645|AU020959 - 17|17 E3 galactose mutarotase protein-coding 102634602 XR_386676 Gm32143 - - 19 C2|19 predicted gene, 32143 ncRNA 108584 Iap3rc5 - - - intracisternal A-type particle, U3 region, SINE repeat c-5 other 100036504 Nashs2 - - - nonalcoholic steatohepatitis susceptibility 2 unknown 70800 Mm.80580 XR_373911 4631405K08Rik - - 1|1 H6 RIKEN cDNA 4631405K08 gene unknown 68017 Mm.38894 NM_026510 ENSMUSG00000029557 Mrm2 2310037B18Rik|Ftsj2 - 5|5 G2 mitochondrial rRNA methyltransferase 2 protein-coding 97816 C80678 - - - expressed sequence C80678 unknown 100040259 NM_001111330 Mif-ps6 EG434371|Gm16379|Mif-ps2 - 9|9 A2 macrophage migration inhibitory factor, pseudogene 6 pseudo 18711 Mm.38370 NM_011086 ENSMUSG00000025949 Pikfyve 5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235 - 1|1 C2 phosphoinositide kinase, FYVE type zinc finger containing protein-coding 13280 Del(14)31H Del31H - - deletion, Chr 14, Harwell 31 other 76559 Mm.114362 NM_029654 ENSMUSG00000041341 Atg2b 2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067 - 12|12 E autophagy related 2B protein-coding 77055 Mm.195788 NM_001033177 ENSMUSG00000075402 Krt76 2310001L23Rik - 15|15 F2 keratin 76 protein-coding 12316 Mm.168523 NM_009791 ENSMUSG00000033952 Aspm Calmbp1|D330028K02Rik|MCPH5|Sha1 - 1|1 E4-F abnormal spindle microtubule assembly protein-coding 320910 Mm.217000 NM_177290 ENSMUSG00000025321 Itgb8 4832412O06Rik - 12|12 F2 integrin beta 8 protein-coding 116772 Cocia2 - - - cocaine induced activation 2 unknown 109279910 LOC109279910 Mm131 - - VISTA enhancer mm131 biological-region 102633020 Mm.421285 XR_382000 ENSMUSG00000103168 Gm30948 - - 12 F2|12 predicted gene, 30948 ncRNA 102634040 Gm31722 - - 6|6 predicted gene, 31722 ncRNA 102631893 LOC102631893 - - 1 A1 uncharacterized protein C9orf40 homolog pseudogene pseudo 100043341 Rpl35a-ps3 Gm10214 - 17|17 A3.3 ribosomal protein L35A, pseudogene 3 pseudo 108184 Rnu6-ps3 - - - U6 small nuclear RNA, pseudogene 3 pseudo 109537 Mnek1a - - - modifier of Nek1 (NIMA-related expressed kinase 1), kidney weight and hematocrit unknown 269589 Mm.25660 NM_031393 ENSMUSG00000028860 Sytl1 9030417L18|PSGL-1|Slp1 - 4|4 D2.3 synaptotagmin-like 1 protein-coding 433770 Gm12986 - - 4|4 D3 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 53809 D17Leh86t D17Leh86(t) - - DNA segment, Chr 17, Lehrach-86(t) unknown 665144 Gm7515 EG665144 - 12|12 C1 predicted gene 7515 pseudo 102637506 Mm.363130 XR_871988 Gm34297 - - 10 C3|10 predicted gene, 34297 ncRNA 654426 NR_002690 LOC654426 - - 14|14 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F pseudogene pseudo 100417005 Gm18356 - - 7|7 B4 MAS-related GPR, member B8 pseudogene pseudo 107358 Mm.246440 NM_133352 ENSMUSG00000025016 Tm9sf3 1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036 - 19|19 C3 transmembrane 9 superfamily member 3 protein-coding 320563 Mm.186499 NM_177193 ENSMUSG00000051243 Islr2 B930052A04Rik|Linx|Mbu-3|mKIAA1465 - 9|9 B immunoglobulin superfamily containing leucine-rich repeat 2 protein-coding 108167820 Gm46233 - - 10 B5.3|10 proteolipid protein 2 pseudogene pseudo 102636076 XR_378520 Gm33248 - - 7 F3|7 predicted gene, 33248 ncRNA 108167486 Gm46014 - - 7 E3|7 predicted gene, 46014 pseudo 102642954 Mm.222825 LOC102642954 - - - uncharacterized LOC102642954 ncRNA 100043041 Mm.395349 Gm4185 - - 14 C2|14 predicted gene 4185 protein-coding 109764 Pol26 Pol-26 - - viral polymerase 26 protein-coding 493092 Hrtfm6 - - 13 59.69 cM heart failure modifier 6 unknown 382209 Mm.357753 NM_194063 ENSMUSG00000071772 Rhox3a AY147207|Gm1138|Prx|Rhox3|Rhox3.1 - X|X A3.3 reproductive homeobox 3A protein-coding 15374 Mm.1775 NM_008258 ENSMUSG00000020737 Jpt1 Hn1 - 11 E2|11 80.84 cM Jupiter microtubule associated homolog 1 protein-coding 225160 Mm.219648 NM_153552 ENSMUSG00000024287 Thoc1 3110002N20Rik|AW107452|NMP-84 - 18|18 A1 THO complex 1 protein-coding 105243100 Gm39120 - - 7|7 predicted gene, 39120 protein-coding 117574 DXJti2 - - X 29.31 cM DNA segment, Chr X, Japan Tobacco Inc. 2 unknown 61741 D4Mit276 - - - DNA segment, Chr 4, Massachusetts Institute of Technology 276 unknown 65959 Ccl19-ps3 ELC|Scya19-ps3 - 4 A5|4 22.27 cM chemokine (C-C motif) ligand 19, pseudogene 3 pseudo 12833 Mm.2509 NM_009933 ENSMUSG00000001119 Col6a1 AI747156|Col6a-1 - 10 C1|10 39.71 cM collagen, type VI, alpha 1 protein-coding 68231 Mm.23887 NM_026627 ENSMUSG00000062651 H2al2a 1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1 - 2|2 A3 H2A histone family member L2A protein-coding 102631736 XR_381618 Gm30001 - - 12 C1|12 predicted gene, 30001 ncRNA 626358 Gm6669 EG626358 - 7|7 B1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 668802 XM_006500506 Gm13941 - - 2 E3|2 predicted gene 13941 protein-coding 625781 Hmgb1l HMG-L6|Hmgl6 - 6 F3|6 63.44 cM high mobility group box 1-like pseudo 492967 Hdlq16 - - 8 44.99 cM HDL QTL 16 unknown 384009 Mm.22213 NM_027450 ENSMUSG00000028480 Glipr2 5730414A08Rik|C77180|GAPR-1 - 4|4 B1 GLI pathogenesis-related 2 protein-coding 27472 51S - - - DNA segment, 51S unknown 62540 D11Mit181 - - 11 71.88 cM DNA segment, Chr 11, Massachusetts Institute of Technology 181 unknown 30853 Mm.29737 NM_145385 ENSMUSG00000030120 Mlf2 AI256856|AU018944|C77284 - 6|6 F2 myeloid leukemia factor 2 protein-coding 18999 Mm.17031 NM_013633 ENSMUSG00000024406 Pou5f1 NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4 - 17 B1|17 18.69 cM POU domain, class 5, transcription factor 1 protein-coding 26442 Mm.208883 NM_011967 ENSMUSG00000068749 Psma5 ZETA - 3|3 F2.3 proteasome (prosome, macropain) subunit, alpha type 5 protein-coding 28257 D10Jhu42 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 42 unknown 100041578 Mm.464400 NM_001243114 ENSMUSG00000095557 Gm3415 - - 5 G3|5 predicted gene 3415 protein-coding 56217 Mm.425777 NM_019579 ENSMUSG00000021112 Mpp5 3830420B02Rik|AI255216|AI644496|Pals1 - 12|12 C3 membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) protein-coding 16221 In(1)1Rk-p In(1)1Rk|In1Rk - - inversion, Chr 1, Roderick 1, proximal other 102633571 XR_376971 Gm31363 - - 5 C3.1|5 predicted gene, 31363 ncRNA 102634255 Gm21729 - - Y|Y predicted gene, 21729 pseudo 18809 ple Tg.ple|Tgple - - perinatal lethality unknown 777676 Ighd5-2 Gm17264 - 12|12 F1 immunoglobulin heavy diversity 5-2 pseudo 233274 Mm.44425 NM_178706 ENSMUSG00000051504 Siglech 6430529G09Rik|Siglec-H - 7|7 B5 sialic acid binding Ig-like lectin H protein-coding 112163560 Mm.440896 C85760 - - - expressed sequence C85760 protein-coding 102636304 XR_876671 Gm33409 - - 17 A3.3|17 predicted gene, 33409 ncRNA 116949 Naad9 - - - Neu associated allelic deletion 9 other 60890 D7Mit83 - - 7 32.84 cM DNA segment, Chr 7, Massachusetts Institute of Technology 83 unknown 258719 Mm.377653 NM_146724 ENSMUSG00000056946 Olfr512 MOR268-3 - 7|7 E3 olfactory receptor 512 protein-coding 108167558 XR_001778679 Gm46056 - - 8 E1|8 predicted gene, 46056 ncRNA 333564 Mm.298000 NM_001007580 ENSMUSG00000033737 Fndc3c1 Fndc3c|Gm784 - X|X D fibronectin type III domain containing 3C1 protein-coding 102633566 Gm29321 - - Y|Y predicted gene 29321 ncRNA 102467276 n-TCgca24 n-Tc24 - 6 B2.3|6 nuclear encoded tRNA cysteine 24 (anticodon GCA) tRNA 16681 Mm.358616 NM_010668 ENSMUSG00000064201 Krt2 BB005427|Krt2-17|Krt2-2|Krt2e - 15 F2|15 57.03 cM keratin 2 protein-coding 100503106 Mm.443215 NR_040368 ENSMUSG00000085845 Gm13944 - - 2 C3|2 45.94 cM predicted gene 13944 ncRNA 67028 Mm.37274 NM_025921 ENSMUSG00000031242 2610002M06Rik 8430408J07Rik|AI876413|Chmp1b2 - X|X D RIKEN cDNA 2610002M06 gene protein-coding 69984 1700025O08Rik - - 4|4 A3 RIKEN cDNA 1700025O08 gene protein-coding 229504 Mm.45744 NM_177663 ENSMUSG00000048039 Isg20l2 4930429N24|C80587 - 3|3 F1 interferon stimulated exonuclease gene 20-like 2 protein-coding 320069 Mm.406320 NR_126486 ENSMUSG00000101731 3830432H09Rik - - 1|1 E2.3 RIKEN cDNA 3830432H09 gene ncRNA 100043667 Mm.480298 NM_001166850 ENSMUSG00000095358 Vmn1r165 Gm4579 - 7 A3|7 vomeronasal 1 receptor 165 protein-coding 213054 Mm.224820 NM_029885 ENSMUSG00000038766 Gabpb2 1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1 - 3 F2.1|3 40.74 cM GA repeat binding protein, beta 2 protein-coding 100417355 Gm18555 - - 5|5 F dual specificity phosphatase 14 pseudogene pseudo 100038580 Mm.392039 6820445E23Rik 4930563B10Rik - - RIKEN cDNA 6820445E23 gene unknown 100124358 Traj31 Gm17008 - 14|14 C2 T cell receptor alpha joining 31 other 102633498 XM_017320503 Gm31309 - - 4 D2.2|4 predicted gene, 31309 protein-coding 666899 Mm.439801 NR_028101 Gm12191 - - 11|11 B1.2 ribosomal protein L30 pseudogene pseudo 100417732 Gm14128 - - 2|2 G3 ankyrin and armadillo repeat containing pseudogene pseudo 102633973 LOC102633973 - - 17 A3.3 nuclease-sensitive element-binding protein 1 pseudogene pseudo 258723 Mm.271534 NM_146728 ENSMUSG00000095138 Olfr781 MOR114-6 - 10|10 D3 olfactory receptor 781 protein-coding 668829 XR_379934 Gm9385 EG668829 - 9|9 F3 predicted pseudogene 9385 pseudo 102637752 Mm.417210 XR_374826 Gm34483 - - 2 E2|2 predicted gene, 34483 ncRNA 60706 D3Mit90 - - 3 3.01 cM DNA segment, Chr 3, Massachusetts Institute of Technology 90 unknown 667451 Gm11214 - - 4|4 C1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 19870 NR_004417 ENSMUSG00000064984 Snord73a Rnu73a|U73a - 3 F1|3 small nucleolar RNA, C/D box U73A snoRNA 68171 Mm.99495 NM_026593 ENSMUSG00000032108 D730048I06Rik Pate-C|Pate6|mANLP2 - 9|9 A4 RIKEN cDNA D730048I06 gene protein-coding 53307 235M8.Sp6 - - - DNA segment, 235M8.Sp6 (Roswell Park) unknown 70956 Mm.158506 NM_027622 ENSMUSG00000039337 Tex19.2 4921530G04Rik|Tex19b - 11|11 E2 testis expressed gene 19.2 protein-coding 218341 Mm.266515 NM_178916 ENSMUSG00000043190 Rfesd AI256775|D030068K09 - 13|13 C1 Rieske (Fe-S) domain containing protein-coding 104092 Ir3 Ir-3 - - immune response 3 unknown 100417329 Gm12852 - - 4|4 C6 ribosomal protein S4, X-linked pseudogene pseudo 213435 Mm.32804 NM_175441 ENSMUSG00000031698 Mylk3 D830007F02Rik|MLCK - 8|8 C3 myosin light chain kinase 3 protein-coding 56811 Mm.103593 NM_020265 ENSMUSG00000028031 Dkk2 - - 3|3 G3 dickkopf WNT signaling pathway inhibitor 2 protein-coding 74136 Mm.272312 NM_028777 ENSMUSG00000020823 Sec14l1 1200017E04Rik|2810012L19Rik|Naa-35 - 11|11 E2 SEC14-like lipid binding 1 protein-coding 102637352 XR_386895 Gm34187 - - X A1.1|X predicted gene, 34187 ncRNA 105242969 XR_882207 Gm39031 - - 7 C|7 predicted gene, 39031 ncRNA 102636519 Gm33561 - - 9|9 predicted gene, 33561 ncRNA 73274 Mm.57286 NM_028487 ENSMUSG00000032745 Gpbp1 1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP - 13|13 D2.2 GC-rich promoter binding protein 1 protein-coding 432479 Mm.440450 NM_001014836 ENSMUSG00000020234 4930404N11Rik 2210409H10Rik|5730551K18Rik|AI854616 - 10|10 C1 RIKEN cDNA 4930404N11 gene protein-coding 52440 Mm.389757 NM_025816 ENSMUSG00000004535 Tax1bp1 1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151 - 6 B3|6 25.7 cM Tax1 (human T cell leukemia virus type I) binding protein 1 protein-coding 18826 Mm.153911 NM_008879 ENSMUSG00000021998 Lcp1 AW536232|D14Ertd310e|LCP-1|Pls2|pp65 - 14 D3|14 39.63 cM lymphocyte cytosolic protein 1 protein-coding 54353 Mm.221479 NM_018773 ENSMUSG00000059182 Skap2 2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R - 6|6 B3 src family associated phosphoprotein 2 protein-coding 100861821 XM_011251072 Gm21245 - - Y C1|Y predicted gene, 21245 protein-coding 108167616 Gm46086 - - 1 A5|1 protein CEBPZOS pseudogene pseudo 101055656 Mm.445192 XR_381070 LOC101055656 - - 11 A3.1 uncharacterized LOC101055656 ncRNA 102638164 XR_388835 Gm34793 - - 11 B4|11 predicted gene, 34793 ncRNA 320379 Mm.446691 NM_177147 D630028G08Rik - - 10|10 B4 RIKEN cDNA D630028G08 gene unknown 102639557 Gm35842 - - 7|7 predicted gene, 35842 ncRNA 546747 Mm.380253 NM_207694 ENSMUSG00000066671 Olfr220 EG546747|MOR103-13P|MOR103-17|Olfr220-ps1|Olfr413-ps1 - 1|1 H3 olfactory receptor 220 protein-coding 626075 Gm6651 EG626075 - 1|1 E2.1 predicted gene 6651 pseudo 233806 Mm.257952 NM_145586 ENSMUSG00000030917 Tmem159 8430420C20Rik - 7|7 F2 transmembrane protein 159 protein-coding 105243466 XR_870945 Gm39381 - - 9 E1|9 predicted gene, 39381 ncRNA 102631686 XR_379324 ENSMUSG00000111400 Gm29961 - - 9 A5.1|9 predicted gene, 29961 ncRNA 73169 3110035G12Rik - - 6|6 RIKEN cDNA 3110035G12 gene protein-coding 100862389 XM_003688969 ENSMUSG00000094155 Btbd35f8 Gm21699 - X A3.2|X BTB domain containing 35, family member 8 protein-coding 666797 Rpl31-ps23 EG666797|Gm8294 - 8|8 A4 ribosomal protein L31, pseudogene 23 pseudo 359885 DXMgc32 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 32 unknown 64903 Rpl30-ps5 - - 2|2 H4 ribosomal protein L30, pseudogene 5 pseudo 109361 Mm.394656 NR_030675 D730005E14Rik - - 15|15 E1 RIKEN cDNA D730005E14 gene ncRNA 100040130 Gm2617 - - 19 A|19 predicted gene 2617 protein-coding 72341 Mm.374250 NM_001081381 ENSMUSG00000054836 Elp6 2610001P13Rik|2610002I17Rik|AV159994|Tmem103 - 9|9 F2 elongator acetyltransferase complex subunit 6 protein-coding 239338 Gm4940 EG239338 - 15|15 A1 NSA2 ribosome biogenesis homolog pseudogene pseudo 11808 Mm.4533 NM_007468 ENSMUSG00000032080 Apoa4 Apoa-4 - 9 A5.2|9 25.36 cM apolipoprotein A-IV protein-coding 320502 Mm.68163 NM_001081157 ENSMUSG00000044086 Lmod3 5430424A14Rik - 6|6 D3 leiomodin 3 (fetal) protein-coding 108168326 XR_001782160 Gm46583 - - 17 E1.1|17 predicted gene, 46583 ncRNA 258482 Mm.377527 NM_146489 ENSMUSG00000043529 Olfr266 MOR122-2 - 3|3 F2.3 olfactory receptor 266 protein-coding 100038618 Mm.441164 XR_383589 Gm10847 - - 14 D3|14 predicted gene 10847 unknown 105976 Mm.394885 NR_045719 AU022793 - - 15 B3.1|15 expressed sequence AU022793 ncRNA 233391 Kansl2-ps EG233391|Gm4885 - 7|7 D1 KAT8 regulatory NSL complex subunit 2, pseudogene pseudo 21135 T(2;4)1Go T1Go - - reciprocal translocation, Chr 2 and 4, Gottingen 1 other 100312517 Vmn1r-ps137 - - 16 A1|16 vomeronasal 1 receptor, pseudogene 137 pseudo 100042967 Gm4134 - - 17 B1|17 predicted gene 4134 protein-coding 100502912 Gm17315 - - 17|17 50.3 cM predicted gene, 17315 ncRNA 100286833 Gm17802 - - 19|19 A eukaryotic translation initiation factor 4A1 pseudogene pseudo 668830 Gm9386 EG668830 - 17|17 E3 predicted pseudogene 9386 protein-coding 100039938 Gm2505 - - 3|3 H1 crumbs homolog 1 pseudogene pseudo 493122 Char5 - - - P. chabaudi malaria resistance QTL 5 unknown 100502941 XM_017315662 Gm17353 - - 13 B3|13 34.5 cM predicted gene, 17353 protein-coding 215028 Mm.458451 NM_172155 ENSMUSG00000062737 Prl3d2 Ghd5|PL-Ib|Plib - 13|13 A3.1 prolactin family 3, subfamily d, member 1 protein-coding 105245136 Gm40629 - - 10|10 predicted gene, 40629 ncRNA 667809 Gm8827 EG667809 - 5|5 G2 predicted gene 8827 pseudo 100416010 Gm17869 - - 10|10 B2 annexin A2 pseudogene pseudo 102465603 NR_105963 ENSMUSG00000098453 Mir6997 Gm27310|mmu-mir-6997 - 2|2 B microRNA 6997 ncRNA 100043407 Mm.380770 XR_168485 Gm4419 - - 12 A1.3|12 predicted gene 4419 ncRNA 77476 C030046M01Rik - - 16|16 RIKEN cDNA C030046M01 gene protein-coding 791298 Mm.483802 Gm9956 - - - predicted gene 9956 unknown 50708 Mm.193539 NM_015786 ENSMUSG00000036181 Hist1h1c 0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a - 13|13 A3.1 histone cluster 1, H1c protein-coding 74854 Mm.159338 NM_001080709 ENSMUSG00000079421 4930402F06Rik - - 2|2 B RIKEN cDNA 4930402F06 gene protein-coding 100042377 Gm3810 Gm12076 - 11 A3.3|11 podoplanin pseudogene pseudo 102640378 Gm36450 - - 11|11 predicted gene, 36450 ncRNA 224024 Mm.194950 NM_153790 ENSMUSG00000012017 Scarf2 NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII - 16|16 A3 scavenger receptor class F, member 2 protein-coding 192650 Mm.207056 NM_138948 ENSMUSG00000009075 Cabp7 - - 11|11 A1 calcium binding protein 7 protein-coding 77816 A930013N22Rik - - 16|16 RIKEN cDNA A930013N22 gene protein-coding 108167438 XR_001778176 Gm45990 - - 7 C|7 predicted gene, 45990 ncRNA 100628594 NR_039587 ENSMUSG00000093290 Mir3572 mir-3572|mmu-mir-3572 - 7 A1|7 2.11 cM microRNA 3572 ncRNA 105245514 XR_873496 Gm40961 - - 13 B1|13 predicted gene, 40961 ncRNA 102638967 XR_385702 Gm35400 - - 17 E1.1|17 predicted gene, 35400 ncRNA 385298 Gm5378 - - X|X A3.2 predicted gene 5378 pseudo 320478 Mm.444063 NR_015580 ENSMUSG00000105265 Sox2ot B230215L15Rik - 3|3 A3 SOX2 overlapping transcript (non-protein coding) ncRNA 100039896 Vmn1r-ps6 Gm2480 - 6|6 A1 vomeronasal 1 receptor, pseudogene 6 pseudo 100503789 Gm19896 - - 6 D1|6 39.99 cM NADH dehydrogenase [ubiquinone] 1 subunit C2-like pseudo 320178 Mm.320413 NR_110484 ENSMUSG00000108060 4921529L05Rik 4930590G02Rik - 6|6 B3 RIKEN cDNA 4921529L05 gene ncRNA 623872 Gm6458 EG623872 - 8|8 B1.3 transmembrane protein 189 pseudogene pseudo 74184 Mm.162554 NR_038055 ENSMUSG00000087410 2310065F04Rik linc-Myh - 11|11 B3 RIKEN cDNA 2310065F04 gene ncRNA 319739 Mm.404725 B230303O12Rik - - 5|5 RIKEN cDNA B230303O12 gene unknown 243431 Mm.429458 Igkv9-124 EG243431|Gm4966 - 6|6 C1 immunoglobulin kappa chain variable 9-124 other 232314 Mm.27223 NM_182939 ENSMUSG00000052144 Ppp4r2 BE691708|C230060M08Rik - 6|6 D3 protein phosphatase 4, regulatory subunit 2 protein-coding 359897 DXMgc39 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 39 unknown 102633176 LOC102633176 - - 13 C1 60S ribosomal protein L36a-like pseudo 109455 Cia1 mCia1 - - collagen induced arthritis QTL 1 unknown 114234 Eae22 - - 11 62.92 cM experimental allergic encephalomyelitis susceptibility 22 unknown 77462 Mm.358781 NM_029912 ENSMUSG00000029452 Tmem116 4930406A18Rik|4930513P12Rik|C030022K24Rik - 5|5 F transmembrane protein 116 protein-coding 257939 Mm.377310 NM_001011776 ENSMUSG00000062782 Olfr527 MOR251-5 - 7|7 F4 olfactory receptor 527 protein-coding 100041146 XR_391123 ENSMUSG00000074419 Gm15448 - - 7|7 A1 predicted gene 15448 protein-coding 102636978 XR_376674 Gm33901 - - 4 D2.2|4 predicted gene, 33901 ncRNA 67885 Mm.27359 NM_175125 ENSMUSG00000051319 1500011K16Rik - - 2|2 F1 RIKEN cDNA 1500011K16 gene ncRNA 103172 Mm.333849 NM_175329 ENSMUSG00000049422 Chchd10 1620401E04Rik|AI267078|Ndg2 - 10|10 C1 coiled-coil-helix-coiled-coil-helix domain containing 10 protein-coding 108168617 XM_017318825 LOC108168617 - - Y D Y-linked testis-specific protein 1-like protein-coding 108168832 LOC108168832 - - 2 E5 60S ribosomal protein L27a pseudogene pseudo 61837 D2Mit296 - - 2 21.81 cM DNA segment, Chr 2, Massachusetts Institute of Technology 296 unknown 667194 Gm8506 EG667194 - Y|Y A1 predicted gene 8506 pseudo 100036152 Lgq4 - - - late growth QTL 4 unknown 77727 Mm.159981 NM_029964 ENSMUSG00000025573 6030468B19Rik Il-40 - 11|11 E2 RIKEN cDNA 6030468B19 gene protein-coding 107065 Mm.39900 NM_178005 ENSMUSG00000071862 Lrrtm2 AI851755|BB129880|C630011A14Rik|mKIAA0416 - 18|18 B1 leucine rich repeat transmembrane neuronal 2 protein-coding 78618 Mm.274646 NM_030138 ENSMUSG00000049076 Acap2 4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041 - 16|16 B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 13938 X83360 ESTM20 - - EST X83360 unknown 105242640 XR_869011 Gm38799 - - 6 B2.1|6 predicted gene, 38799 ncRNA 108217 Rps19X-ps1 pS19X - - ribosomal protein S19, X-linked pseudogene 1 pseudo 100042447 Gm3851 - - 1 E2.3|1 High mobility group protein 1 (HMG-1) (Amphoterin) (Heparin-binding protein p30) pseudo 100862388 XM_017321254 ENSMUSG00000096045 Gm21698 - - 5 B1|5 predicted gene, 21698 protein-coding 67441 Mm.41385 NM_026158 ENSMUSG00000052605 Isoc2b 0610042E07Rik|AI553388|Isoc2 - 7|7 A1 isochorismatase domain containing 2b protein-coding 17156 Mm.271617 NM_010763 ENSMUSG00000008763 Man1a2 AI428775|AI528764|AI854422|Man1b|PCR2 - 3|3 F2.2 mannosidase, alpha, class 1A, member 2 protein-coding 52995 K4T7 - - - DNA segment, K4T7 unknown 102467638 n-TRtct5 n-Tr20 - 1 H3|1 nuclear encoded tRNA arginine 5 (anticodon TCT) tRNA 61264 D2Mit172 - - 2 86.56 cM DNA segment, Chr 2, Massachusetts Institute of Technology 172 unknown 105244226 Gm39873 - - 2|2 predicted gene, 39873 ncRNA 227624 Mm.29600 NM_001024616 ENSMUSG00000015087 Rabl6 B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf - 2|2 A3 RAB, member RAS oncogene family-like 6 protein-coding 102633903 Gm13785 - - 2 E1|2 50.92 cM predicted gene 13785 pseudo 105245070 XR_872977 Gm40572 - - 12 F1|12 predicted gene, 40572 ncRNA 102636581 Mm.427333 XR_868536 4930548G05Rik - - 5|5 G1.2 RIKEN cDNA 4930548G05 gene ncRNA 67640 Mm.482903 NM_026289 4930465K10Rik - - 18|18 E3 RIKEN cDNA 4930465K10 gene ncRNA 105243567 Gm39455 - - 9|9 predicted gene, 39455 ncRNA 667862 Gm11245 - - 4|4 C3 developmentally regulated GTP binding protein 1 pseudogene pseudo 723847 NR_029774 ENSMUSG00000065481 Mir346 Mirn346|mir-346|mmu-mir-346 - 14|14 B microRNA 346 ncRNA 62998 D10Mit301 - - 10 43.61 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 301 unknown 214669 Mm.280768 NM_145993 ENSMUSG00000022394 L3mbtl2 4732493N06Rik|M4mbt - 15|15 E1 L3MBTL2 polycomb repressive complex 1 subunit protein-coding 100035718 Pbctlp1 - - - peripheral blood cytotoxic T lymphocyte percentage 1 unknown 319719 Mm.376151 NM_176987 ENSMUSG00000043183 Simc1 4732471D19Rik - 13|13 B1 SUMO-interacting motifs containing 1 protein-coding 320813 A630078A22Rik - - 4|4 RIKEN cDNA A630078A22 gene protein-coding 74667 Mm.159286 NR_046274 ENSMUSG00000115304 4930434J06Rik - - 14|14 D2 RIKEN cDNA 4930434J06 gene ncRNA 623688 XM_011247413 Gm6445 - - 19 A|19 predicted gene 6445 protein-coding 108167326 Mm.333879 NR_155436 Gm2788 100040465 - 7|7 B4 predicted gene 2788 ncRNA 102640645 Mm.341767 XR_381738 Gm36660 - - 12 C3|12 predicted gene, 36660 ncRNA 105245494 XR_873375 Gm40942 - - 13 A5|13 predicted gene, 40942 ncRNA 108207 Ppi-ps1 - - - peptidylprolyl isomerase, pseudogene 1 pseudo 100534272 LOC100534272 - - 1|1 H4 keratin 8 pseudogene pseudo 102466779 NR_105947 ENSMUSG00000098608 Mir6981 Gm27609|mmu-mir-6981 - 18|18 B3 microRNA 6981 ncRNA 70494 Mm.135815 NM_001033154 5730409K12Rik - - 19|19 A RIKEN cDNA 5730409K12 gene unknown 100040804 Gm2975 - - 8|8 B3.1 transformer 2 beta homolog pseudogene pseudo 76217 Mm.134602 NM_001163637 ENSMUSG00000024502 Jakmip2 6430702L21Rik|AI850334|D930046L20Rik - 18|18 B3 janus kinase and microtubule interacting protein 2 protein-coding 27674 D11Moh28 - - - DNA segment, Chr 11, KL Mohlke 28 unknown 258241 Mm.377387 NM_207140 ENSMUSG00000048226 Olfr1212 MOR233-17|MOR233-20 - 2|2 E1 olfactory receptor 1212 protein-coding 442838 Mm.417717 XM_017318024 A830021F12Rik - - 18 A1|18 RIKEN cDNA A830021F12 gene protein-coding 269109 Mm.417716 NM_199021 ENSMUSG00000036815 Dpp10 6430601K09Rik|DPP X|Dprp3 - 1|1 E2.3 dipeptidylpeptidase 10 protein-coding 21461 Mm.264651 NM_011553 ENSMUSG00000071322 Tcp10a D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a - 17 4.72 cM|17 A1 t-complex protein 10a protein-coding 224813 Mm.70999 NM_001111142 ENSMUSG00000071073 Lrrc73 Gm88 - 17|17 C leucine rich repeat containing 73 protein-coding 218630 Mm.25457 NM_001081062 ENSMUSG00000042417 Ccno C86987|Ccnu|E130318K11|UDG2|Ung2 - 13|13 D2.2 cyclin O protein-coding 100036067 Epfq3 - - - epididymal fat pad weight QTL 3 unknown 72720 Mm.212572 NM_028335 ENSMUSG00000030145 Zfp248 2810037F07Rik|E130106N01Rik - 6|6 F1 zinc finger protein 248 protein-coding 102631623 XR_391215 Gm29918 Gm45154 - 7 A3|7 predicted gene, 29918 ncRNA 20608 Mm.35324 NM_009219 ENSMUSG00000037014 Sstr4 Smstr4|sst4 - 2 G3|2 73.44 cM somatostatin receptor 4 protein-coding 140557 Mm.182737 NM_080470 ENSMUSG00000022432 Smc1b SMC-1B|SMC1beta|Smc1l2 - 15|15 E2 structural maintenance of chromosomes 1B protein-coding 102639328 Mm.123295 XR_391252 Gm35665 Gm45229 - 7 B2|7 predicted gene, 35665 ncRNA 102634885 XR_385564 Gm32362 - - 17 B1|17 predicted gene, 32362 ncRNA 102642196 XR_881442 Gm38599 - - 4 D2.2|4 predicted gene, 38599 ncRNA 102636802 XR_373430 Gm33774 - - 1 C2|1 predicted gene, 33774 ncRNA 105244789 XR_868578 Gm40339 - - 5 G2|5 predicted gene, 40339 ncRNA 75338 Mm.487222 NM_029256 ENSMUSG00000030617 Ccdc83 4930549K11Rik|4930554C01Rik|4932423M01Rik - 7|7 E1 coiled-coil domain containing 83 protein-coding 102637585 Gm34356 - - 5|5 predicted gene, 34356 ncRNA 100049711 NR_029642 ENSMUSG00000078041 Mir292 Mirn292|mir-292a|mmu-mir-292|mmu-mir-292a - 7 A1|7 microRNA 292 ncRNA 100035659 Ascla2 - - 10 7.94 cM atherosclerotic lesion area 2 unknown 385905 Gm5406 EG385905 - 16|16 B5 proteasome (prosome, macropain) subunit, alpha type 3 pseudogene pseudo 102631982 LOC102631982 - - 3 F2.2 catechol O-methyltransferase domain-containing protein 1 pseudogene pseudo 19213 Mm.69647 NM_018809 ENSMUSG00000026735 Ptf1a PTF1-p48|PTF1p48|bHLHa29 - 2|2 A3 pancreas specific transcription factor, 1a protein-coding 72271 Mm.249242 1700026N04Rik - - 13|13 A5 RIKEN cDNA 1700026N04 gene ncRNA 108229 Hmgb1-rs20 Hmg1-rs20 - - high mobility group box 1, related sequence 20 pseudo 105180381 D430042D18Rik - - - Riken cDNA D430042D18 gene protein-coding 436085 Aldoa-ps3 Gm5747 - 9 E1|9 aldolase A, pseudogene 3 pseudo 19124 Mm.3243 NM_011171 ENSMUSG00000027611 Procr AI325044|Ccca|Ccd41|Epcr - 2|2 H1 protein C receptor, endothelial protein-coding 70887 Mm.29672 NM_027591 ENSMUSG00000031323 Dmrtc1a 1700030H14Rik|4921520P21Rik|DMRTC1|Dmrt8.1 - X|X D DMRT-like family C1a protein-coding 16006 Mm.21300 NM_008341 ENSMUSG00000020429 Igfbp1 - - 11 A1|11 4.75 cM insulin-like growth factor binding protein 1 protein-coding 105243151 XR_870282 Gm39150 - - 8 A2|8 predicted gene, 39150 ncRNA 670464 Mm.473676 NM_001099311 ENSMUSG00000078261 Gm11596 - - 11 D|11 predicted gene 11596 protein-coding 102640072 XR_380204 Gm36228 - - 10 A4|10 predicted gene, 36228 ncRNA 625574 Tgif2-ps1 Gm12605 - 4|4 C4 TGFB-induced factor homeobox 2, pseudogene 1 pseudo 434128 Mm.483018 NM_001099636 ENSMUSG00000070802 Pnmal2 EG434128 - 7|7 A2 PNMA-like 2 protein-coding 109286561 LOC109286561 - - - Tbx4 lung enhancer biological-region 108169116 XR_001785047 Gm46942 - - 5 F|5 predicted gene, 46942 ncRNA 85066 D4Mit89 - - 4 24.66 cM DNA segment, Chr 4, Massachusetts Institute of Technology 89 unknown 17236 mct1 - - - modifier of curly tail 1 unknown 114236 Eae15 - - 10 9.78 cM experimental allergic encephalomyelitis susceptibility 15 unknown 18762 Mm.28561 NM_008860 ENSMUSG00000029053 Prkcz AI098070|C80388|Pkcz|R74924|aPKCzeta|nPKC-zeta|zetaPKC - 4 E2|4 86.17 cM protein kinase C, zeta protein-coding 100628623 NR_039549 ENSMUSG00000093096 Mir3968 mmu-mir-3968|mu-mir-3968 - 11 E2|11 80.84 cM microRNA 3968 ncRNA 19599 Rb(6.19)2Icg Rb2Icg - - Robertsonian translocation, Chr 6 and 19, Inst of Cytology and Genetics Novosibirsk 2 other 19583 Rb(6.10)13Tu Rb13Tu - - Robertsonian translocation, Chr 6 and 10, Tubingen 13 other 233020 Mm.429716 NM_001033315 ENSMUSG00000040424 Hipk4 Gm162 - 7|7 A3 homeodomain interacting protein kinase 4 protein-coding 732535 Gt(pU21)115Imeg Ayu21-115|GtAyu21-115 - - gene trap 115, Institute of Molecular Embryology and Genetics unknown 105246517 XR_877626 Gm41798 - - 18 E3|18 predicted gene, 41798 ncRNA 433481 Mm.330630 NR_136884 ENSMUSG00000074758 Gm5535 EG433481 - 2 G1|2 predicted gene 5535 ncRNA 100036341 Qbis3 - - 11 51.23 cM QTL for body weight independent of sex 3 unknown 171588 Mm.450554 NR_038065 ENSMUSG00000083674 Gm38402 - - 2 G1|2 zinc finger protein pseudogene pseudo 791118 9330160F10Rik - - 11 B3|11 RIKEN cDNA 9330160F10 gene unknown 111647 Ms19 MMS19 - - minisatellites detected by probe MMS19 other 666616 Gm8192 EG666616 - 11|11 A4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 652987 Gm12582 - - 3|3 B zinc finger, CCHC domain containing 17 pseudogene pseudo 105245144 Mm.121098 XR_871625 Gm40637 - - 10 B2|10 predicted gene, 40637 ncRNA 258108 Olfr1127-ps1 MOR211-5P - 2|2 D olfactory receptor 1127, pseudogene 1 pseudo 85141 D7Mit295 - - 7 33.44 cM DNA segment, Chr 7, Massachusetts Institute of Technology 295 unknown 101055979 LOC101055979 - - X A4 glyceraldehyde-3-phosphate dehydrogenase-like pseudo 102467522 n-TEctc12 n-Te12 - 3 F2.1|3 nuclear encoded tRNA glutamic acid 12 (anticodon CTC) tRNA 102631885 XR_382843 Gm30106 - - 13 D1|13 predicted gene, 30106 ncRNA 102635972 XR_874988 Gm33173 - - 14 E4|14 predicted gene, 33173 ncRNA 71041 Mm.35413 NM_027654 ENSMUSG00000025050 Pcgf6 4933407A11Rik|AI604840|MBLR|Rnf134 - 19|19 C3 polycomb group ring finger 6 protein-coding 223453 Mm.222867 NM_146057 ENSMUSG00000039168 Dap 4921531N22Rik|AI789753|AU040360 - 15|15 B2 death-associated protein protein-coding 102631649 XR_389543 Gm29935 - - 5 F|5 predicted gene, 29935 ncRNA 192657 Mm.21288 NM_138953 ENSMUSG00000001542 Ell2 - - 13|13 C1 elongation factor RNA polymerase II 2 protein-coding 241431 Mm.261043 NM_001024618 ENSMUSG00000027022 Xirp2 2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2 - 2|2 C1.3 xin actin-binding repeat containing 2 protein-coding 98558 Mm.26189 NM_175296 ENSMUSG00000040629 Mael 4933405K18Rik|AU019877 - 1|1 H2.3 maelstrom spermatogenic transposon silencer protein-coding 100862156 Gm21524 - - Y|Y predicted gene, 21524 protein-coding 16543 Mm.1314 NM_175088 ENSMUSG00000041390 Mdfic Kdt1|Mdfid - 6|6 A1 MyoD family inhibitor domain containing protein-coding 320982 Mm.27968 NM_177305 ENSMUSG00000049866 Arl4c A630084M22Rik|Arl7|LAK - 1|1 D ADP-ribosylation factor-like 4C protein-coding 328381 Mm.235694 NM_177816 ENSMUSG00000037833 Sh2d4b A430109M18Rik|D030001E08 - 14|14 B SH2 domain containing 4B protein-coding 74660 Mm.170672 NR_040747 ENSMUSG00000087609 4930442J19Rik 1700029E19Rik|Gm14152 - 2 G3|2 RIKEN cDNA 4930442J19 gene ncRNA 100417904 Gm18891 - - 9|9 A4 predicted gene, 18891 pseudo 102638357 Gm34942 - - 16|16 predicted gene, 34942 protein-coding 100036081 W10q3 - - - weight 10 weeks QTL 3 unknown 105245767 LOC105245767 - - 14 D1 eukaryotic translation initiation factor 1 pseudogene pseudo 238057 Mm.271308 NM_013527 ENSMUSG00000037660 Gdf7 BMP12 - 12|12 A1.1 growth differentiation factor 7 protein-coding 78197 Mm.444639 4930544I03Rik - - 12|12 D3 RIKEN cDNA 4930544I03 gene protein-coding 108168037 n-TEctc2 Trnae-cuc|n-Te2 - 12 B1|12 nuclear encoded tRNA glutamic acid 2 (anticodon CTC) tRNA 110307 Int41 Int-41 - - mammary tumor integration site 41 protein-coding 77849 Mm.374388 B430319H21Rik - - 11|11 B3 RIKEN cDNA B430319H21 gene unknown 19452 Rb(1.3)1Lub Rb1Lub - - Robertsonian translocation, Chr 1 and 3, Lubeck 1 other 101055669 Gm29708 - - 7 A1|7 zinc finger pseudogene pseudo 626858 XM_006514364 Gm6713 EG626858 - 10|10 C1 predicted gene 6713 protein-coding 100504278 Mm.380907 2810402E24Rik - - 14|14 RIKEN cDNA 2810402E24 gene unknown 100417810 Gm18842 - - 19|19 A predicted gene, 18842 pseudo 52531 D13Ertd224e - - 13 10.08 cM DNA segment, Chr 13, ERATO Doi 224, expressed unknown 102635820 Gm33065 - - 3|3 predicted gene, 33065 ncRNA 102636917 XR_001779321 Gm33858 - - 9 F4|9 predicted gene, 33858 ncRNA 100504650 Mm.208374 A730085E03Rik Gm752 - 18 E2|18 43.02 cM RIKEN cDNA A730085E03 gene ncRNA 66439 Mm.87163 NM_025563 ENSMUSG00000062376 Borcs7 2010012O05Rik|4930569L17Rik|AI413851|AI467257 - 19|19 C3 BLOC-1 related complex subunit 7 protein-coding 432534 NM_001005857 Gm5429 EG432534 - 11|11 A1 predicted gene 5429 unknown 78580 Mm.44991 XR_379940 D730003K21Rik - - 9|9 F3 RIKEN cDNA D730003K21 gene unknown 105243118 XR_870134 Gm39129 Gm45046 - 8 A1.1|8 predicted gene, 39129 ncRNA 319565 Mm.26652 NM_001005510 ENSMUSG00000063450 Syne2 6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011 - 12 C3|12 33.11 cM spectrin repeat containing, nuclear envelope 2 protein-coding 100503622 Mm.101433 NR_152250 ENSMUSG00000107875 Gm16630 - - 6 B2.3|6 23.1 cM predicted gene, 16630 ncRNA 101856 Mm.440647 AW488515 - - - expressed sequence AW488515 unknown 105247142 XR_881355 Gm42295 - - 4 C1|4 predicted gene, 42295 ncRNA 75094 Mm.399281 4930522N08Rik - - 5|5 E4 RIKEN cDNA 4930522N08 gene protein-coding 97222 C77691 - - - expressed sequence C77691 unknown 102632280 Mup-ps17 Gm12554 - 4|4 32.9 cM major urinary protein, pseudogene 17 ncRNA 108168380 XR_001782445 Gm46624 - - 18 E3|18 predicted gene, 46624 ncRNA 258954 Mm.377769 NM_146952 ENSMUSG00000051180 Olfr522 MOR103-5 - 7|7 F4 olfactory receptor 522 protein-coding 110296 Ifna10 Ifa10 - - interferon alpha 10 protein-coding 72345 Mm.182867 NM_175179 ENSMUSG00000050332 Amer1 2810002O09Rik|AW492303|Fam123b|Wtx - X|X C3 APC membrane recruitment 1 protein-coding 21328 T(X;7)6Rl T6Rl - - reciprocal translocation, Chr X and 7, Russell 6 other 66734 Mm.196239 NM_025735 ENSMUSG00000027602 Map1lc3a 1010001H21Rik|4922501H04Rik|LC3|LC3a - 2|2 H1 microtubule-associated protein 1 light chain 3 alpha protein-coding 105247254 Gm42383 - - 7|7 predicted gene, 42383 protein-coding 76658 Mm.73235 NM_029693 ENSMUSG00000029526 1700123K08Rik - - 5|5 G2 RIKEN cDNA 1700123K08 gene protein-coding 105245620 XR_873898 Gm41050 - - 13 D1|13 predicted gene, 41050 ncRNA 102639190 Gm35556 - - 12|12 predicted gene, 35556 ncRNA 110157 Mm.184163 NM_029780 ENSMUSG00000000441 Raf1 6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf - 6 E3|6 53.62 cM v-raf-leukemia viral oncogene 1 protein-coding 171470 D8Ertd28e - - 8|8 53.04 cM DNA segment, Chr 8, ERATO Doi 28, expressed unknown 100416965 Gm18340 - - 12|12 F2 high mobility group box 2 pseudogene pseudo 100113462 Secia2 - - - small effect CIA locus 2 unknown 61684 D6Mit273 - - 6 22.51 cM DNA segment, Chr 6, Massachusetts Institute of Technology 273 unknown 101056221 Crry-ps Crrx|Gm38435|Mcp-ps|mCRX - 8 35.31 cM|8 B3.3 complement receptor related protein, pseudogene pseudo 27568 D5Buc37 335K24.T7 - - DNA segment, Chr 5, Bucan 37 unknown 67752 Mm.25939 NM_133689 ENSMUSG00000035179 Ppp1r32 4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S - 19|19 A protein phosphatase 1, regulatory subunit 32 protein-coding 111115 Eif3s6-ps5 Int6-ps5 - - eukaryotic translation initiation factor 3, subunit 6, pseudogene 5 pseudo 74675 Mm.61213 NM_029049 ENSMUSG00000039198 Ptchd3 4930451E13Rik|4933440L20Rik|RNDEu-3 - 11|11 E2 patched domain containing 3 protein-coding 94065 Mm.29489 NM_053162 ENSMUSG00000034880 Mrpl34 0610007O17Rik|D8Bwg1484e - 8 B3.3|8 34.43 cM mitochondrial ribosomal protein L34 protein-coding 102631704 Gm29974 - - 19|19 predicted gene, 29974 ncRNA 85111 D16Mit10 - - 16 24.2 cM DNA segment, Chr 16, Massachusetts Institute of Technology 10 unknown 105245037 XR_872912 Gm40548 - - 12 D3|12 predicted gene, 40548 ncRNA 54612 Mm.470071 NM_018780 ENSMUSG00000018822 Sfrp5 AI605071|SARP3 - 19|19 C3 secreted frizzled-related sequence protein 5 protein-coding 432508 Mm.478881 NM_001013391 ENSMUSG00000055531 Cpsf6 4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7 - 10|10 D2 cleavage and polyadenylation specific factor 6 protein-coding 72399 Mm.153372 NM_028227 ENSMUSG00000029458 Brap 3010002G07Rik|BRAP2|IMP - 5|5 F BRCA1 associated protein protein-coding 330004 Mm.291863 NM_001033414 Gm833 - - 4|4 E2 predicted gene 833 ncRNA 100036505 Amdt2 - - - amphetamine distance traveled 2 unknown 27386 Mm.247044 NM_013780 ENSMUSG00000021010 Npas3 4930423H22Rik|bHLHe12 - 12|12 C1 neuronal PAS domain protein 3 protein-coding 108169156 Gm44803 - - 6 D1|6 40S ribosomal protein S29 pseudogene pseudo 102632991 XR_383249 Gm30926 - - 14 A3|14 predicted gene, 30926 ncRNA 100653 Mm.440932 AI449212 - - - expressed sequence AI449212 protein-coding 98528 AU018740 - - - expressed sequence AU018740 unknown 23947 Mm.131097 NM_011845 ENSMUSG00000000266 Mid2 FXY2|Trim1 - X F1|X 61.35 cM midline 2 protein-coding 11989 Mm.5140 NM_007515 ENSMUSG00000031297 Slc7a3 Atrc3|CAT-3|CAT3|SLC7A1|SLC7A2 - X|X D solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 protein-coding 102465980 NR_105902 ENSMUSG00000098579 Mir6937 Gm27448|mmu-mir-6937 - 12|12 A2 microRNA 6937 ncRNA 110629 Tel2p - - - telomeric sequence, Chr 2, centromere end protein-coding 105242647 XR_869051 Gm38803 - - 6 B2.3|6 predicted gene, 38803 ncRNA 27666 D11Moh31 - - - DNA segment, Chr 11, KL Mohlke 31 unknown 329942 Mm.421342 NM_001281955 ENSMUSG00000028804 Csmd2 Gm139 - 4|4 D2.2 CUB and Sushi multiple domains 2 protein-coding 23828 Mm.332793 NM_024285 ENSMUSG00000071317 Bves Pop1|Popdc1|mBVES - 10 B2|10 23.47 cM blood vessel epicardial substance protein-coding 105095 AA517650 - - - expressed sequence AA517650 protein-coding 60717 D8Mit60 - - 8 6.38 cM DNA segment, Chr 8, Massachusetts Institute of Technology 60 unknown 72083 Mm.22351 NM_029354 ENSMUSG00000022671 Mzt2 2410018G20Rik|2610001E06Rik|Fam128|Fam128b - 16|16 A2 mitotic spindle organizing protein 2 protein-coding 60456 Smt3h1-ps - - X|X F3 SMT3 suppressor of mif two 3 homolog 1, pseudogene (S. cerevisiae) pseudo 100035788 Splq9 - - - spleen weight QTL 9 unknown 74448 Mm.159203 NM_028947 ENSMUSG00000052549 Arl13a 4933422M21Rik|Arl13 - X|X E3 ADP-ribosylation factor-like 13A protein-coding 56291 Mm.202561 NM_019637 ENSMUSG00000053205 Styx 0610039A20Rik|hStyxb - 14|14 C1 serine/threonine/tyrosine interaction protein protein-coding 111537 Pmv12 Pmv-12 - - polytropic murine leukemia virus 12 other 109194138 LOC109194138 - - - Fgf18 promoter region biological-region 380660 Mm.336072 NM_198636 ENSMUSG00000035948 Acss3 8430416H19Rik|Gm874 - 10|10 D1 acyl-CoA synthetase short-chain family member 3 protein-coding 668346 Gm9117 EG668346 - 3 F2.1|3 TD and POZ domain containing 1 pseudogene pseudo 100418186 Gm12314 - - 11|11 B3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 pseudogene pseudo 548103 Mm.242728 LOC548103 - - - uncharacterized LOC548103 unknown 52194 D5Ertd102e - - 5 42.85 cM DNA segment, Chr 5, ERATO Doi 102, expressed unknown 105245906 XR_875100 Gm41286 - - 15 B2|15 predicted gene, 41286 ncRNA 17068 Mm.878 NM_010742 ENSMUSG00000034634 Ly6d Ly-61|Ly61|Thb - 15 D3|15 34.27 cM lymphocyte antigen 6 complex, locus D protein-coding 360126 D17Brg125 - - - DNA segment, Chr 17, David E. Bergstrom 125 unknown 100416888 Gm7496 EG665109 - 1|1 H2.1 cyclin-dependent kinase 7 pseudogene pseudo 108167960 Gm46318 - - 12 B3|12 putative 60S ribosomal protein L39-like 5 pseudo 22041 Mm.37214 NM_133977 ENSMUSG00000032554 Trf AI266983|Cd176|HP|Tf|Tfn|hpx - 9 F1|9 55.03 cM transferrin protein-coding 53786 D0Tu15 D17Tu15 - - DNA segment, Tubingen 15 unknown 53896 Mm.35567 NM_017394 ENSMUSG00000030495 Slc7a10 AL024237|Asc-1|D7Bwg0847e - 7 B2|7 21.13 cM solute carrier family 7 (cationic amino acid transporter, y+ system), member 10 protein-coding 791073 NR_030428 ENSMUSG00000076454 Mir762 Mirn762|mir-762|mmu-mir-762 - 7 F3|7 microRNA 762 ncRNA 100035277 Chlq7 - - 15 19.26 cM circulating hormone level QTL 7 unknown 100035965 Lbn4 LBN5.1 - 5 75.55 cM long bones 4 unknown 404504 Olfr1369-ps1 GA_x5J8B7W36P1-1107539-1107771|GA_x6K02T2QHY8-12126170-12125935|MOR256-31 - 13|13 A2 olfactory receptor 1369, pseudogene 1 pseudo 97775 Mm.220299 NM_175289 ENSMUSG00000052563 D930048N14Rik AI315703|R75254 - 11|11 B1.3 RIKEN cDNA D930048N14 gene ncRNA 243328 Mm.125942 NM_146257 ENSMUSG00000050822 Slc29a4 ENT4|mPMAT - 5|5 G2 solute carrier family 29 (nucleoside transporters), member 4 protein-coding 19407 Rare5 - - - retinoic acid response element 5 other 667837 Gm8838 EG667837 - 8|8 D3 ferritin light chain 1 pseudogene pseudo 100861483 NR_046130 ENSMUSG00000094956 n-R5s122 Rn5s13 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 122 rRNA 259103 Mm.377845 NM_147099 ENSMUSG00000047544 Olfr616 MOR19-1 - 7|7 E3 olfactory receptor 616 protein-coding 102635151 XR_875105 Gm32562 - - 15 B3.1|15 predicted gene, 32562 ncRNA 380920 Mm.297771 NM_001033440 ENSMUSG00000075512 Gm1587 - - 14|14 D3 predicted gene 1587 protein-coding 100503496 Mm.265874 NR_040680 Gm45916 - - 11 E1|11 predicted gene, 45916 ncRNA 17182 Mm.42226 NM_010770 ENSMUSG00000020583 Matn3 AV009181 - 12 A1.1|12 3.96 cM matrilin 3 protein-coding 100534363 Gm21043 - - 5|5 E1 pleckstrin and Sec7 domain containing 3 pseudogene pseudo 97526 C78591 - - - expressed sequence C78591 unknown 246256 Mm.251254 NM_144559 ENSMUSG00000059089 Fcgr4 4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3 - 1 H3|1 78.53 cM Fc receptor, IgG, low affinity IV protein-coding 100124626 NR_037256 ENSMUSG00000094159 Mir467a-5 Mirn467a-5|mmu-mir-467a-5 - 2 A1|2 microRNA 467a-5 ncRNA 12935 crn - - - cranioschisis unknown 102637714 Gm34454 - - 9|9 predicted gene, 34454 ncRNA 108167984 XR_001780565 Gm46337 - - 12 A1.2|12 predicted gene, 46337 ncRNA 100504215 Mm.483665 Gm20115 - - 7|7 43.46 cM predicted gene, 20115 unknown 67946 Mm.275526 NM_026470 ENSMUSG00000034401 Spata6 1700062C23Rik|AI790763|Hash|KRP|Mash - 4|4 D1 spermatogenesis associated 6 protein-coding 100040263 Gm20834 - - Y|Y predicted gene, 20834 protein-coding 14958 Mm.24350 NM_008197 ENSMUSG00000096210 H1f0 D130017D06Rik|H1(0)|H1fv - 15 E1|15 37.7 cM H1 histone family, member 0 protein-coding 102637565 XR_865817 Gm34342 - - 1 H5|1 predicted gene, 34342 ncRNA 387149 NR_029544 ENSMUSG00000065484 Mir130a Mirn130|Mirn130a|mir-130a - 2|2 D microRNA 130a ncRNA 57808 Mm.19355 NM_021338 ENSMUSG00000060636 Rpl35a 2810431L15Rik|Rpl35 - 16|16 B3 ribosomal protein L35A protein-coding 105244961 Gm40479 - - 8|8 predicted gene, 40479 ncRNA 107080640 Cns-2 - - 7 D3-E1 tyrosinase CNS-2 distal regulatory element biological-region 404517 Olfr1476-ps1 GA_x5J8B7W6KF8-5563315-5562883 - 19|19 A olfactory receptor 1476, pseudogene 1 pseudo 624433 Gm6503 EG624433 - 8|8 B2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 pseudogene pseudo 101055676 XM_017318898 LOC101055676 - - - protein FAM205A-like protein-coding 52898 Mm.29852 NM_173742 ENSMUSG00000093989 Rnasek 2310033H11Rik|AA571397|D11Bwg0434e - 11 B3|11 42.99 cM ribonuclease, RNase K protein-coding 20341 Mm.196558 NM_009150 ENSMUSG00000068874 Selenbp1 Lp56|Lpsb|MTO|SBP56 - 3 F2.1|3 40.74 cM selenium binding protein 1 protein-coding 75433 Mm.60907 NR_130158 ENSMUSG00000087170 1700001G01Rik - - 18|18 A1 RIKEN cDNA 1700001G01 gene ncRNA 258393 Mm.377477 NM_146398 ENSMUSG00000051706 Olfr1325 MOR102-1 - X|X A7.3 olfactory receptor 1325 protein-coding 100861491 NR_046144 ENSMUSG00000096037 n-R5s136 Rn5s20 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 136 rRNA 223921 Mm.352946 NM_153416 ENSMUSG00000036678 Aaas AAA|ADRACALA|D030041N15Rik|GL003 - 15|15 F3 achalasia, adrenocortical insufficiency, alacrimia protein-coding 75869 Mm.174068 NM_029466 ENSMUSG00000017418 Arl5b 4930587A11Rik|AW146430|Arl8 - 2|2 A2 ADP-ribosylation factor-like 5B protein-coding 102640785 XR_380321 Gm36769 - - 10 B4|10 predicted gene, 36769 ncRNA 105242578 XR_868723 Gm38752 - - 5 G3|5 predicted gene, 38752 ncRNA 62886 D11Mit225 - - 11 73.8 cM DNA segment, Chr 11, Massachusetts Institute of Technology 225 unknown 623453 Gm13669 - - 2|2 C3 predicted gene 13669 pseudo 100037260 Mm.442236 NR_015525 ENSMUSG00000100632 9430060I03Rik - - 1 D|1 RIKEN cDNA 9430060I03 gene ncRNA 102467539 n-THgtg6 n-Th6 - 3 F2.1|3 nuclear encoded tRNA histidine 6 (anticodon GTG) tRNA 105245976 XR_875406 Gm41345 - - 15 D3|15 predicted gene, 41345 ncRNA 105245379 Gm40845 - - 12|12 predicted gene, 40845 ncRNA 100125411 Cyp2d33-ps - - 15|15 E1 cytochrome P450, family 2, subfamily d, polypeptide 33, pseudogene pseudo 108255 Gapdh-ps7 Gapd-ps7|domes7 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 7 pseudo 56589 282h8Sp6 - - - DNA segment, 282h8Sp6 unknown 19066 pr - - - porcine tail unknown 111462 H2-Q H-2Q - - histocompatibility 2, Q region other 140709 Mm.295020 NM_024474 ENSMUSG00000004415 Col26a1 9430032K24Rik|BC002218|Col26a|Emid2|Emu2 - 5|5 G2 collagen, type XXVI, alpha 1 protein-coding 672495 Gm16464 EG667836 - 7|7 E3 cyclin Y-like 1 pseudogene pseudo 140477 Mm.213206 NM_130865 ENSMUSG00000028707 Dmbx1 Atx|Cdmx|Mbx|Otx3 - 4 D1|4 53.07 cM diencephalon/mesencephalon homeobox 1 protein-coding 100036352 Scgq5 Scg-5 - 13 14.44 cM spontaneous crescentic glomerulonephritis QTL 5 unknown 627035 XM_006514373 Gm6729 EG627035 - 10|10 C1 predicted gene 6729 protein-coding 71968 Mm.274226 NM_028026 ENSMUSG00000025722 Wdr73 1200011I23Rik|2410008B13Rik|AI848574|C85352 - 7|7 D3 WD repeat domain 73 protein-coding 751545 NR_030499 ENSMUSG00000070081 Mir505 Mirn505|mir-505|mmu-mir-505 - X A6|X microRNA 505 ncRNA 102632367 XM_006528380 LOC102632367 - - X D doublesex- and mab-3-related transcription factor C1-like protein-coding 259096 Mm.377839 NM_147092 ENSMUSG00000073966 Olfr561 MOR14-2 - 7|7 E3 olfactory receptor 561 protein-coding 17732 TrnH - - - tRNA tRNA 107392 Mm.29628 NM_134155 ENSMUSG00000080268 Brms1 AV003220|AW554636 - 19|19 A breast cancer metastasis-suppressor 1 protein-coding 117228 nelg - - - neuroendocrine lineage protein-coding 56490 Mm.136238 NM_019778 ENSMUSG00000022708 Zbtb20 1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288 - 16 B4|16 28.44 cM zinc finger and BTB domain containing 20 protein-coding 77979 Mm.122932 B230104C14Rik - - 2|2 RIKEN cDNA B230104C14 gene protein-coding 70968 4931407J08Rik - - 16|16 RIKEN cDNA 4931407J08 gene protein-coding 100041642 XM_001476944 Spin2-ps4 EG546323|Gm16388 - X|X A7.3 spindlin family, member 2, pseudogene 4 protein-coding 102635680 XR_374919 Gm32957 - - 2 E5|2 predicted gene, 32957 ncRNA 102639499 Gm35800 - - 15|15 predicted gene, 35800 ncRNA 105245135 Gm40628 - - 10|10 predicted gene, 40628 ncRNA 13640 Mm.7978 NM_010109 ENSMUSG00000048915 Efna5 AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS - 17 E1.1|17 32.57 cM ephrin A5 protein-coding 71475 8430413D17Rik - - 14|14 RIKEN cDNA 8430413D17 gene protein-coding 493020 Tlyr1 - - 19 21.34 cM thymic lymphoma resistance 1 unknown 666641 Gm8209 EG666641 - 7|7 A2 predicted gene 8209 pseudo 102632470 XM_006512956 Gm30534 - - 10 A4|10 predicted gene, 30534 protein-coding 111522 Pmv40 Pmv-40 - - polytropic murine leukemia virus 40 other 108168014 XR_001780646 Gm46363 - - 12 C3|12 predicted gene, 46363 ncRNA 63025 D11Mit260 - - 11 37.96 cM DNA segment, Chr 11, Massachusetts Institute of Technology 260 unknown 100035455 Vmmt2 - - - vertebral morphology and mechanical traits 2 unknown 105247213 XR_881580 Gm42351 - - 4 E2|4 predicted gene, 42351 ncRNA 62911 D10Mit200 - - 10 37.4 cM DNA segment, Chr 10, Massachusetts Institute of Technology 200 unknown 224807 Mm.157904 NM_198167 ENSMUSG00000036026 Tmem63b BC026370 - 17|17 B3 transmembrane protein 63b protein-coding 102632176 XR_375229 Gm30320 - - 2 H3|2 predicted gene, 30320 ncRNA 105246991 XR_880627 Gm42179 - - X A3.1|X predicted gene, 42179 ncRNA 102637155 Gm34039 - - 4|4 predicted gene, 34039 pseudo 223828 Mm.74208 NM_146062 ENSMUSG00000036167 Pphln1 CR|HSPC206|HSPC232 - 15|15 E3 periphilin 1 protein-coding 100417273 Gm18497 - - X|X B RAS guanyl releasing protein 4 pseudogene pseudo 102467436 n-TFgaa5 n-Tf5 - 14 E4|14 nuclear encoded tRNA pheylalanine 5 (anticodon GAA) tRNA 108168763 XR_001783320 Gm13594 1810047P18Rik - 2|2 C1.3 predicted gene 13594 ncRNA 100036319 Ses9 - - 3 63.04 cM salmonella enteritidis susceptibility 9 unknown 100418357 Gm12734 - - 11|11 B5 eukaryotic translation initiation factor 2, subunit 1 alpha pseudogene pseudo 52423 Mm.411676 D8Ertd620e - - 8 73.65 cM DNA segment, Chr 8, ERATO Doi 620, expressed unknown 19367 Mm.277629 NM_011237 ENSMUSG00000024824 Rad9a Rad9 - 19|19 A RAD9 checkpoint clamp component A protein-coding 61971 D8Mit311 - - 8 46.52 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 311 unknown 16857 Mm.210336 NM_010707 Lgals6 galectin-6 - 7 B1|7 lectin, galactose binding, soluble 6 protein-coding 108410 Xmmv14 Env-14|Xmmv-14 - - xenotropic-MCF leukemia virus 14 other 60722 D9Mit64 - - 9 14.35 cM DNA segment, Chr 9, Massachusetts Institute of Technology 64 unknown 18690 NM_008836 Phxr5 cp2.2 - 7|7 F1 per-hexamer repeat gene 5 other 100418171 Gm19053 - - 19|19 A ATG2 autophagy related 2 homolog A pseudogene pseudo 108168293 Mm.148033 XR_001781956 C030010L15Rik - - 16|16 C4 RIKEN cDNA C030010L15 gene ncRNA 667663 Mm.330033 NM_148413 ENSMUSG00000025716 Myo3a 9030416P08Rik - 2|2 A3 myosin IIIA protein-coding 108168774 XR_001783386 Gm46751 - - 2 C3|2 predicted gene, 46751 ncRNA 102640475 Gm29390 - - Y|Y predicted gene 29390 ncRNA 102634163 XR_373650 Gm31815 - - 1 H2.1|1 predicted gene, 31815 ncRNA 62534 D11Mit165 - - 11 51.56 cM DNA segment, Chr 11, Massachusetts Institute of Technology 165 unknown 20975 Mm.236068 NM_011523 ENSMUSG00000023805 Synj2 AI481647|SJ2|mKIAA0348 - 17 A1|17 3.59 cM synaptojanin 2 protein-coding 76410 Mm.57512 XR_376631 1700021L23Rik - - 4|4 D2.2 RIKEN cDNA 1700021L23 gene ncRNA 236893 Gm4912 EG236893 - X|X C2 melanoma antigen, family B, 2 pseudogene pseudo 629919 Ighv8-4 EG629919|Gm7017 - 12|12 F2 immunoglobulin heavy variable V8-4 other 108168697 LOC108168697 - - - aurora kinase C-like pseudo 62280 D19Mit41 - - 19 13.18 cM DNA segment, Chr 19, Massachusetts Institute of Technology 41 unknown 51898 D3Ertd452e - - - DNA segment, Chr 3, ERATO Doi 452, expressed unknown 62162 D14Mit60 - - 14 24.6 cM DNA segment, Chr 14, Massachusetts Institute of Technology 60 unknown 258753 Mm.377675 NM_146758 ENSMUSG00000073913 Olfr678 MOR32-5 - 7|7 E3 olfactory receptor 678 protein-coding 18230 Mm.27915 NM_008750 ENSMUSG00000020844 Nxn l11Jus13 - 11 B5|11 45.92 cM nucleoredoxin protein-coding 105243578 XR_871388 Gm39463 - - 9 F4|9 predicted gene, 39463 ncRNA 384220 Mm.469880 NM_001104627 ENSMUSG00000092080 Vmn2r16 EG384220 - 5|5 F vomeronasal 2, receptor 16 protein-coding 100503564 Gm19771 - - 16|16 33.65 cM cyclin-dependent kinases regulatory subunit 2-like pseudo 102635553 Mm.437918 XR_377786 Gm15624 - - 6 C3|6 35.94 cM predicted gene 15624 ncRNA 277899 XM_205592 Gm725 - - 6|6 A1 predicted gene 725 protein-coding 100042325 Gm3791 - - 12|12 D1 endothelin converting enzyme 2 pseudogene pseudo 229584 Mm.274787 NM_172683 ENSMUSG00000038902 Pogz 9530006B08Rik - 3|3 F2.1 pogo transposable element with ZNF domain protein-coding 258844 Mm.377717 NM_146847 ENSMUSG00000075172 Olfr1090 MOR188-4 - 2|2 D olfactory receptor 1090 protein-coding 98039 C87114 - - - expressed sequence C87114 protein-coding 102466881 NR_106167 ENSMUSG00000099118 Mir8092 Gm27407|mmu-mir-8092 - 19|19 C3 microRNA 8092 ncRNA 68926 Mm.41864 NM_026872 ENSMUSG00000028433 Ubap2 1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491 - 4|4 A5 ubiquitin-associated protein 2 protein-coding 107603 Raet8 - - - retinoic acid early transcript 8 unknown 102634237 XR_373651 Gm31869 - - 1 H2.1|1 predicted gene, 31869 ncRNA 75681 Mm.154604 2310041K03Rik - - 8|8 RIKEN cDNA 2310041K03 gene protein-coding 105244346 XR_866905 Gm39974 - - 2 H1|2 predicted gene, 39974 ncRNA 243780 Mm.333006 NM_175528 ENSMUSG00000037172 E330009J07Rik AI841796|Lchn|mKIAA1147 - 6|6 B1 RIKEN cDNA E330009J07 gene protein-coding 72507 Mm.221455 NM_028258 ENSMUSG00000037784 Dzip1l 2610524A10Rik|AI663976 - 9|9 E3.3 DAZ interacting protein 1-like protein-coding 111236 Hras1-ps1 Hras2 - - Harvey rat sarcoma virus oncogene, pseudogene 1 pseudo 69668 Mm.379170 NM_027159 ENSMUSG00000042111 Ccdc115 2310061I09Rik|Ccp1 - 1|1 B coiled-coil domain containing 115 protein-coding 104394 Mm.34554 NM_148952 ENSMUSG00000014859 E2f4 2010111M04Rik|AI427446 - 8|8 D3 E2F transcription factor 4 protein-coding 232536 Mm.46656 NM_145573 ENSMUSG00000040112 Mrps35 MDSO23|MRP-S28|MRPS28 - 6|6 G3 mitochondrial ribosomal protein S35 protein-coding 244608 Mm.248902 NM_172914 ENSMUSG00000036598 Ccdc113 4933409I22|BC060957 - 8|8 C5 coiled-coil domain containing 113 protein-coding 108168525 XM_017318715 ENSMUSG00000096016 LOC108168525 - - Y C3 X-linked lymphocyte-regulated protein PM1-like protein-coding 100042534 Gm3890 - - 16 A1|16 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105244758 XR_868459 Gm40311 - - 5 C3.1|5 predicted gene, 40311 ncRNA 102207 AU015590 - - - expressed sequence AU015590 unknown 100050 Mm.84664 AI197429 - - - expressed sequence AI197429 unknown 258463 Mm.377517 NM_146471 ENSMUSG00000059864 Olfr1393 MOR256-24 - 11|11 B1.2 olfactory receptor 1393 protein-coding 21841 Mm.333219 NM_011585 ENSMUSG00000071337 Tia1 2310050N03Rik|AI256674|TIA-1|mTIA-1 - 6|6 D1 cytotoxic granule-associated RNA binding protein 1 protein-coding 674324 Gm9619 - - 8|8 C5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100418428 Gm19207 - - 15|15 A2 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene pseudo 102636694 XR_389647 Gm33694 - - 3 A3|3 predicted gene, 33694 ncRNA 78911 Mm.108347 NM_030219 ENSMUSG00000032451 Trim42 4930486B16Rik - 9|9 E3.3 tripartite motif-containing 42 protein-coding 100126774 Mm.350534 NM_001244763 ENSMUSG00000094024 Esp18 Gm20579 - 17 B1|17 19.22 cM exocrine gland secreted peptide 18 protein-coding 105243607 XR_870893 Gm39476 - - 9 D|9 predicted gene, 39476 ncRNA 100418112 Gm19006 - - 10|10 D2 soc-2 (suppressor of clear) homolog pseudogene pseudo 102638806 Gm35283 - - 15|15 predicted gene, 35283 protein-coding 492997 Lvrq3 - - - liver weight QTL 3 unknown 56424 Mm.277599 NM_019719 ENSMUSG00000039615 Stub1 0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip - 17 A3.3|17 12.93 cM STIP1 homology and U-Box containing protein 1 protein-coding 62071 D10Mit53 - - 10 21.55 cM DNA segment, Chr 10, Massachusetts Institute of Technology 53 unknown 117147 Mm.427560 NM_054094 ENSMUSG00000033533 Acsm1 Acas3|Bucs1|Macs - 7|7 F2 acyl-CoA synthetase medium-chain family member 1 protein-coding 100417414 Gm8523 667222 - 7|7 E2 MYST histone acetyltransferase 1 pseudogene pseudo 108168189 XM_017316336 LOC108168189 - - 14 B disks large homolog 5-like protein-coding 98119 C81269 - - - expressed sequence C81269 unknown 100041596 Mm.417228 NM_001205249 ENSMUSG00000093805 Gal3st2b Gal3ST-2|Gal3st2|Gm9994 - 1 D|1 galactose-3-O-sulfotransferase 2B protein-coding 27522 268M14S - - - DNA segment, 268M14S unknown 13367 Mm.195916 NM_007858 ENSMUSG00000024456 Diaph1 D18Wsu154e|Dia1|Diap1|Drf1|p140mDia - 18 B3|18 19.71 cM diaphanous related formin 1 protein-coding 111864 Pltr6 - - - polytropic long terminal repeat containing proviral locus 6 other 387520 Tas2r142-ps5 Tas2r42 - 6|6 G1 taste receptor, type 2, member 142, pseudogene 5 pseudo 71743 Mm.182271 NM_027896 ENSMUSG00000001755 Coasy 1300003G02Rik|Dpck|Ppat|Ukr1 - 11|11 D Coenzyme A synthase protein-coding 320715 Mm.445757 C530043K16Rik - - 5|5 C3.1 RIKEN cDNA C530043K16 gene unknown 20276 Mm.144114 NM_011324 ENSMUSG00000030340 Scnn1a ENaC|SCNEA|Scnn1|mENaC - 6 F3|6 59.32 cM sodium channel, nonvoltage-gated 1 alpha protein-coding 100036228 Hbnr4 Hpnr4 - - Heligmosomoides bakeri nematode resistance 4 unknown 102465791 NR_106161 ENSMUSG00000098679 Mir7688 Gm27874|mmu-mir-7688 - 10|10 C2 microRNA 7688 ncRNA 320940 Mm.490394 NM_001001798 ENSMUSG00000062949 Atp11c A330005H02Rik|AI315324|Ig - X|X A6 ATPase, class VI, type 11C protein-coding 237781 Mm.339760 NM_001009927 ENSMUSG00000018599 Mief2 AI482195|Gm11|Smcr7 - 11|11 B2 mitochondrial elongation factor 2 protein-coding 26356 Mm.25709 NM_011919 ENSMUSG00000045969 Ing1 2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b - 8|8 A1.1 inhibitor of growth family, member 1 protein-coding 63013 D19Mit132 - - 19 22.39 cM DNA Segment, Chr 19, Massachusetts Institute of Technology 132 unknown 109363677 LOC109363677 - - - Bmp3 5' regulatory region biological-region 21386 Mm.219139 NM_011535 ENSMUSG00000018604 Tbx3 D5Ertd189e - 5 F|5 60.34 cM T-box 3 protein-coding 67273 Mm.248778 NM_024197 ENSMUSG00000026260 Ndufa10 2900053E13Rik - 1|1 D NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10 protein-coding 73377 Mm.452122 1700058P15Rik - - 7|7 RIKEN cDNA 1700058P15 gene protein-coding 66394 Mm.272139 NM_025533 ENSMUSG00000003421 Nosip 2310061K06Rik|CGI-25 - 7|7 B3 nitric oxide synthase interacting protein protein-coding 100040933 Gm16397 EG621098 - X|X E3 armadillo repeat containing, X-linked 6 pseudogene pseudo 100034887 Skmw5 - - - skeletal muscle weight 5 unknown 108168730 LOC108168730 - - 2 E3 60S ribosomal protein L13 pseudogene pseudo 112001 Hlq5 - - - heat loss QTL 5 unknown 67846 Mm.310476 NM_026407 ENSMUSG00000002845 Tmem39a 2610033C09Rik - 16|16 B4 transmembrane protein 39a protein-coding 114621 Mobq5 Mob5 - 2 38.54 cM multigenic obesity QTL 5 unknown 50928 Mm.20434 NM_016970 ENSMUSG00000030114 Klrg1 2F1-Ag|MAFA|MAFA-L - 6 F1|6 57.52 cM killer cell lectin-like receptor subfamily G, member 1 protein-coding 11864 Mm.38594 NM_007488 ENSMUSG00000015709 Arnt2 Hif-2b|bHLHe1|mKIAA0307 - 7 D3|7 48.35 cM aryl hydrocarbon receptor nuclear translocator 2 protein-coding 112163573 AA529465 - - - expressed sequence AA529465 protein-coding 73260 1700041M05Rik - - 4|4 RIKEN cDNA 1700041M05 gene protein-coding 105246801 Gm42026 - - 8|8 predicted gene, 42026 protein-coding 102642514 LOC102642514 - - - ribosome biogenesis protein NSA2 homolog protein-coding 100035852 W3q8 - - - weight 3 weeks QTL 8 unknown 545887 Tubb3-ps1 EG545887 - 6|6 G1 tubulin, beta 3 class III, pseudogene 1 pseudo 100502940 Mm.235705 NM_001195681 ENSMUSG00000079559 Colca2 Gm684 - 9|9 A5.3 COLCA2 homolog protein-coding 242736 Mm.275953 NM_172877 ENSMUSG00000046862 Pramef8 4732496O08Rik|AU023234 - 4|4 E1 PRAME family member 8 protein-coding 100049598 Fmtq17 - - - femur mechanical trait QTL 17 unknown 100043464 Gm4451 - - 7|7 B3 predicted gene 4451 pseudo 75717 Mm.218910 NM_027807 ENSMUSG00000032030 Cul5 4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1 - 9|9 A5.3 cullin 5 protein-coding 224088 Mm.8924 NM_001128094 ENSMUSG00000022533 Atp13a3 AU022875|Gm1745|Gm541|Gm542 - 16|16 B2 ATPase type 13A3 protein-coding 105243229 Gm39207 - - 8|8 predicted gene, 39207 ncRNA 665828 Mm.482151 NM_001357655 ENSMUSG00000074252 Gm10654 EG665828 - 8|8 B3.3 predicted gene 10654 protein-coding 665850 Gm7821 EG665850 - X|X E3 ribosomal protein, large, P0 pseudogene pseudo 100418033 Gm18957 - - 5|5 B1 acyl-CoA synthetase long-chain family member 6 pseudogene pseudo 93877 Mm.59009 NM_053131 ENSMUSG00000051678 Pcdhb6 Pcdhb5B|PcdhbF - 18|18 B3 protocadherin beta 6 protein-coding 102638018 Gm34686 - - 17|17 predicted gene, 34686 ncRNA 28297 D10Jhu34e - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 34 expressed unknown 77621 Mm.405788 C330008A17Rik - - 18|18 RIKEN cDNA C330008A17 gene protein-coding 77647 Mm.167298 NM_198297 ENSMUSG00000030775 Trat1 C030046M14Rik|Tcrim|Trim - 16|16 B5 T cell receptor associated transmembrane adaptor 1 protein-coding 100504331 Gm11679 - - 11|11 75.72 cM predicted gene 11679 pseudo 77992 D730042M07Rik - - - RIKEN cDNA D730042M07 gene protein-coding 102466885 NR_106186 ENSMUSG00000099275 Mir8107 Gm27455|mmu-mir-8107 - 9|9 F2 microRNA 8107 ncRNA 102632904 Gm30858 - - Y|Y predicted gene, 30858 protein-coding 245622 Mm.260106 NM_146261 ENSMUSG00000042595 Fam199x - - X|X F1 family with sequence similarity 199, X-linked protein-coding 53380 Mm.17640 NM_016883 ENSMUSG00000031429 Psmd10 AW554874 - X|X F1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 protein-coding 100415769 Gm15302 - - 8|8 A2 zinc finger, MYM-type 5 pseudogene pseudo 102637055 Gm33961 - - 8|8 predicted gene, 33961 ncRNA 623935 Gm6463 EG623935 - 8|8 B1.3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102639270 XR_377267 Gm35620 - - 5 G3|5 predicted gene, 35620 ncRNA 105245899 Mm.451676 LOC105245899 - - 15 B1 gem nuclear organelle associated protein 4 pseudogene pseudo 102871 Mm.26565 NM_175326 ENSMUSG00000042498 D330045A20Rik AI132325|Radx - X|X F1 RIKEN cDNA D330045A20 gene protein-coding 100502616 Gm12787 - - 4 C6|4 45.58 cM 60S ribosomal protein L32-like pseudo 384845 Umpk-ps EG384845|Gm5352 - 8 C1|8 uridine monophosphate kinase, pseudogene pseudo 67895 Mm.28897 NM_026438 ENSMUSG00000020089 Ppa1 2010317E03Rik|Pyp - 10 B4|10 32.25 cM pyrophosphatase (inorganic) 1 protein-coding 102639922 Gm10157 - - 9 F3|9 70.6 cM predicted gene 10157 pseudo 214685 Mm.393287 NM_001164320 ENSMUSG00000063765 Chadl AY100452|D930017K21Rik - 15|15 E1 chondroadherin-like protein-coding 624685 Mm.464392 Gm6521 EG624685 - 4|4 C4 predicted gene 6521 unknown 102640966 XR_373734 Gm36904 - - 1 H4|1 predicted gene, 36904 ncRNA 102631805 XM_006516992 LOC102631805 - - 13 A5 serine/threonine-protein kinase par-1-like protein-coding 19576 Rb(5.15)4Lub Rb4Lub - - Robertsonian translocation, Chr 5 and 15, Lubeck 4 other 100044633 XM_017320511 LOC100044633 - - 4|4 E1 trafficking protein particle complex subunit 2 protein-coding 104277 Glud-ps EG545999|Glud-2|Glud2|Gm5902 - 7 F3|7 glutamate dehydrogenase, pseudogene pseudo 100040944 NM_001346707 Gm3055 - - 10|10 C1 predicted gene 3055 protein-coding 100042940 Mm.387088 XR_382715 Gm4117 - - 13 C3|13 predicted gene 4117 ncRNA 108169058 LOC108169058 - - 5 E5 40S ribosomal protein S6 pseudogene pseudo 16322 Mm.1100 NM_010564 ENSMUSG00000032968 Inha AW555078 - 1 C4|1 39.16 cM inhibin alpha protein-coding 100035091 W3q14 - - - weight 3 weeks QTL 14 unknown 213417 Mm.39723 NM_144810 ENSMUSG00000042115 Klhdc8a A630065K24Rik - 1|1 E4 kelch domain containing 8A protein-coding 100039493 Gm2267 - - 15|15 B3.3 eukaryotic translation initiation factor 4B pseudogene pseudo 102467348 n-TKctt18 n-Tk18 - 9 E3.1|9 nuclear encoded tRNA lysine 18 (anticodon CTT) tRNA 73218 Mm.3285 NM_175195 ENSMUSG00000035206 Sppl2b 3110056O03Rik|AW550292|PSL1 - 10|10 C1 signal peptide peptidase like 2B protein-coding 319766 5330409N07Rik - - 12|12 RIKEN cDNA 5330409N07 gene protein-coding 73385 Mm.439875 NM_028527 ENSMUSG00000095595 Fam177a 1700047I17Rik|1700047I17Rik1|C14orf24|D730001C10Rik|Fam177a1 - 12|12 C1 family with sequence similarity 177, member A protein-coding 384639 Mm.261760 NM_001013781 Gm5334 EG384639 - 7 C|7 tetraspanin 7 pseudogene pseudo 218215 Mm.287609 NM_146042 ENSMUSG00000038068 Rnf144b BC025007|E130105P19Rik|Ibrdc2|Pir2 - 13|13 A5 ring finger protein 144B protein-coding 19345 Mm.29829 NM_024456 ENSMUSG00000019173 Rab5c AI326010|Rabl - 11 D|11 63.54 cM RAB5C, member RAS oncogene family protein-coding 17849 Murvy - - - murine repeated virus, Y-linked protein-coding 191577 cir - - 9|9 circling unknown 100862360 XM_003689113 Gm21672 - - Y C3|Y predicted gene, 21672 protein-coding 100416386 Siah1-ps2 Gm18091|Sinh-1D|Sinh1-ps2 - 15|15 B3.1 siah E3 ubiquitin protein ligase 1, pseudogene 2 pseudo 69441 Mm.380648 NM_027082 ENSMUSG00000020940 1700023F06Rik - - 11|11 E1 RIKEN cDNA 1700023F06 gene protein-coding 230775 Mm.262241 NM_173071 ENSMUSG00000028782 Adgrb2 Bai2 - 4|4 D2.2 adhesion G protein-coupled receptor B2 protein-coding 492938 Hypt - - 13 14.23 cM hypertension unknown 19712 Mm.28840 NM_011263 ENSMUSG00000029249 Rest 2610008J04Rik|AA407358|NRSF|REST4 - 5|5 C3.3 RE1-silencing transcription factor protein-coding 230145 Mm.132246 NM_172693 ENSMUSG00000039774 Galnt12 9130206E10|A630062B03Rik - 4|4 B1 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 62385 D14Mit138 - - 14 12.52 cM DNA segment, Chr 14, Massachusetts Institute of Technology 138 unknown 108168737 XR_001783223 Gm46729 - - 2 A1|2 predicted gene, 46729 ncRNA 102637742 LOC102637742 - - 1 C3 cell growth-regulating nucleolar protein pseudo 723821 NR_029810 ENSMUSG00000070126 Mir199a-2 Mirn199a-2|mir-199a-2 - 1|1 H2.1 microRNA 199a-2 ncRNA 259042 Mm.271575 NM_147040 ENSMUSG00000063216 Olfr1351 MOR139-4 - 10|10 C1 olfactory receptor 1351 protein-coding 14609 Mm.378921 NM_010288 ENSMUSG00000050953 Gja1 AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43 - 10 B4|10 28.64 cM gap junction protein, alpha 1 protein-coding 102633413 Mm.405675 Gm29530 - - 12|12 predicted gene 29530 ncRNA 383548 Mm.483991 NM_198680 ENSMUSG00000073602 Serpinb3b Scca2-rs|Scca2-rs1 - 1|1 E2.1 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3B protein-coding 75103 4930518I17Rik - - 15|15 RIKEN cDNA 4930518I17 gene protein-coding 100417571 Gm13217 - - 2|2 A1 solute carrier family 25, member 36 pseudogene pseudo 78055 4930569F06Rik - - 5|5 F RIKEN cDNA 4930569F06 gene ncRNA 108168577 XM_017318781 LOC108168577 - - Y E Y-linked testis-specific protein 1-like protein-coding 105242711 Gm38854 - - 6|6 predicted gene, 38854 ncRNA 108167751 XR_001779586 LOC108167751 - - 1 H5 uncharacterized LOC108167751 ncRNA 105247188 XR_881499 9130020K20Rik - - 4|4 D3 RIKEN cDNA 9130020K20 gene ncRNA 228850 Mm.398185 NM_177227 ENSMUSG00000027652 Ralgapb AI507211|B230339M05Rik|p170 - 2|2 H1 Ral GTPase activating protein, beta subunit (non-catalytic) protein-coding 780804 Ighv11-1 Gm16611 - 12|12 F1 immunoglobulin heavy variable 11-1 other 110120438 LOC110120438 - - - VISTA enhancer mm1515 biological-region 51997 D17Ertd165e - - 17 15.59 cM DNA segment, Chr 17, ERATO Doi 165, expressed unknown 105245225 XR_871853 Gm40709 - - 10 C1|10 predicted gene, 40709 ncRNA 100416669 Gm18180 - - 1|1 C5 zinc finger protein 617 pseudogene pseudo 667717 Gm8779 EG667717 - 13 A5|13 predicted gene 8779 pseudo 20448 Mm.27446 NM_011373 ENSMUSG00000079442 St6galnac4 SIAT7-D|ST6GalNAcIV|Siat7d - 2|2 B ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 protein-coding 492860 Sluc29 - - 10 3.04 cM susceptibility to lung cancer 29 unknown 100909391 I-ag7 - - - MHC class II molecule I-Ag7 protein-coding 100416286 Gm13665 - - 2|2 C3 ribosomal protein L17 pseudogene pseudo 105246686 XR_878444 Gm41934 - - 1 E2.3|1 predicted gene, 41934 ncRNA 100043945 Gm14491 - - X|X A1.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 676294 Gm9671 - - 14|14 B predicted gene 9671 pseudo 102636755 XR_382920 Gm15323 - - 13 D2.2|13 63.73 cM predicted gene 15323 ncRNA 112163556 C78840 - - - expressed sequence C78840 protein-coding 331046 Mm.195309 NM_177911 ENSMUSG00000025787 Tgm4 9530008N10Rik|Eapa1|TGP - 9|9 F4 transglutaminase 4 (prostate) protein-coding 100418395 Gm19183 - - 17|17 E1.3 budding uninhibited by benzimidazoles 3 homolog pseudogene pseudo 52908 D17Bwg1496e - - - DNA segment, Chr 17, Brigham & Women's Genetics 1496 expressed unknown 545647 Mm.380019 NM_001243165 ENSMUSG00000096582 Gm13289 - - 4 C4|4 predicted gene 13289 protein-coding 791415 Mm.374791 NM_001358018 ENSMUSG00000056411 Gm12500 - - 3 F2.3|3 predicted gene 12500 protein-coding 27640 D13Die24 - - 13 53.03 cM DNA segment, Chr 13, Dietrich 24 unknown 14289 Mm.378918 NM_008039 ENSMUSG00000052270 Fpr2 E330010I07Rik|Fpr-rs2 - 17|17 A3.2 formyl peptide receptor 2 protein-coding 104220 Ly26 Ly-26 - - lymphocyte antigen 26 protein-coding 546936 Gm5997 EG546936 - 7|7 A3 myotubularin related protein 2 pseudogene pseudo 108169069 XR_001784955 ENSMUSG00000085433 Gm16001 - - 5 F|5 63.39 cM predicted gene 16001 ncRNA 384039 Hspd1-ps4 Gm12725|Hspd1-2p - 4|4 C7 heat shock protein 1 (chaperonin), pseudogene 4 pseudo 100504342 Gm13413 - - 2 B|2 22.09 cM 60S ribosomal protein L15-like pseudo 102636480 Gm33535 - - 9 A4|9 predicted gene, 33535 pseudo 105244865 Gm40396 - - 6|6 predicted gene, 40396 ncRNA 102632867 XR_882138 Gm30829 - - 7 C|7 predicted gene, 30829 ncRNA 102638983 XR_382025 Gm35413 - - 13 A1|13 predicted gene, 35413 ncRNA 100043793 Mm.448053 NR_138098 Gm4651 - - 6 F1|6 predicted gene 4651 ncRNA 100416232 Gm17987 - - 7|7 B5 carbonic anhydrase 8 pseudogene pseudo 15957 Mm.439751 NM_008331 ENSMUSG00000034459 Ifit1 ISG56|Ifi56|P56 - 19|19 C1 interferon-induced protein with tetratricopeptide repeats 1 protein-coding 18212 Mm.130054 NM_008745 ENSMUSG00000055254 Ntrk2 GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB - 13 B1|13 31.2 cM neurotrophic tyrosine kinase, receptor, type 2 protein-coding 102635367 Gm21802 - - Y|Y predicted gene, 21802 protein-coding 105244693 XR_868171 Gm40255 - - 4 D2.2|4 predicted gene, 40255 ncRNA 112035 Szv3 Kasz8 - - seizure severity 3 unknown 493165 Synch2 - - 4 37.32 cM synechia 2 unknown 541610 Mm.378036 NM_001014398 ENSMUSG00000070298 Trcg1 - - 9|9 B taste receptor cell gene 1 protein-coding 624153 NM_001281530 ENSMUSG00000082482 H2afb2 EG624153|H2A.Bbd4|H2afb2-ps - X|X E1 H2A histone family, member B2 protein-coding 110578 Tcra-V12.1 - - - T cell receptor alpha, variable 12.1 other 100041289 Mm.393767 XR_876628 Gm3255 - - 17 A2|17 predicted gene 3255 unknown 100034906 Spha3 Spa3 - - sperm head anomaly 3 unknown 11819 Mm.158143 NM_009697 ENSMUSG00000030551 Nr2f2 2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2 - 7 C|7 38.66 cM nuclear receptor subfamily 2, group F, member 2 protein-coding 109562 Stpy - - - stripey protein-coding 77191 Mm.336625 A930005N03Rik - - 1|1 RIKEN cDNA A930005N03 gene unknown 100035405 Mpcp10 - - - myeloid progenitor cell proliferation 10 unknown 12031 NR_033762 Bc1-ps1 Bc1 - 7 E1|7 51.86 cM brain cytoplasmic RNA 1, pseudogene 1 pseudo 100416522 Gm18143 - - 14|14 E5 asparagine synthetase pseudogene pseudo 100504102 Mm.482973 Gm20064 - - 13 D1|13 49.26 cM predicted gene, 20064 unknown 102636156 LOC102636156 - - 17 B1 non-histone chromosomal protein HMG-14 pseudogene pseudo 102638230 Gm21908 - - Y|Y predicted gene, 21908 protein-coding 100502973 Mm.243907 XR_104879 Gm12996 - - 4 D1|4 53.35 cM predicted gene 12996 ncRNA 99459 Mm.487530 BB176314 - - - expressed sequence BB176314 unknown 328099 Mm.268180 NM_001037746 ENSMUSG00000079104 Prps1l3 AU021838|AW536152|Gm5081 - 12 C1|12 24.7 cM phosphoribosyl pyrophosphate synthetase 1-like 3 protein-coding 100048813 XR_141493 LOC100048813 - - - germ cell-less-like unknown 16009 Mm.29254 NM_008343 ENSMUSG00000020427 Igfbp3 AI649005|IGFBP-3|IGgfbp3 - 11 A1|11 4.75 cM insulin-like growth factor binding protein 3 protein-coding 100504266 Gm20140 - - 14|14 11.53 cM predicted gene, 20140 unknown 57738 Mm.281804 NM_021301 ENSMUSG00000022899 Slc15a2 8430408C16Rik|C78862|Pept2 - 16|16 B3 solute carrier family 15 (H+/peptide transporter), member 2 protein-coding 100418065 Gm18979 - - 15|15 E3 NADH dehydrogenase (ubiquinone) Fe-S protein 2 pseudogene pseudo 30823 DXChri3 - - - DNA segment, Chr X, Children's Hospital Research Institute 3 unknown 19614 Rb(8.12)5Bnr Rb5Bnr - - Robertsonian translocation, Chr 8 and 12, Universitat Bonn/Rhein 5 other 100042349 Gm10359 - - 5 E5|5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 12165 Mm.422844 NM_019506 ENSMUSG00000072625 Gdf2 Bmp9 - 14|14 B growth differentiation factor 2 protein-coding 70717 Mm.252139 NM_027519 ENSMUSG00000029659 Medag 6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3 - 5|5 G3 mesenteric estrogen dependent adipogenesis protein-coding 114142 Mm.332919 NM_053242 ENSMUSG00000029563 Foxp2 2810043D05Rik|AI449000|CAG-16|D0Kist7 - 6|6 A1 forkhead box P2 protein-coding 102640916 XR_387111 Gm36867 - - X F5|X predicted gene, 36867 ncRNA 19280 Mm.258771 NM_011218 ENSMUSG00000013236 Ptprs AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma - 17 D|17 29.32 cM protein tyrosine phosphatase, receptor type, S protein-coding 78568 Mm.403189 9630009A06Rik - - 15|15 B2 RIKEN cDNA 9630009A06 gene protein-coding 61332 D3Mit195 - - 3 65.3 cM DNA segment, Chr 3, Massachusetts Institute of Technology 195 unknown 107512 Sto2 Sto-2 - - 16 steroid alpha-hydroxylase 2 protein-coding 102638842 Gm35310 - - 7|7 predicted gene, 35310 ncRNA 112218 Faq10 - - 19 13.82 cM fluctuating asymmetry QTL 10 unknown 18027 Mm.31274 NM_010905 ENSMUSG00000028565 Nfia 1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A - 4 C6|4 45.52 cM nuclear factor I/A protein-coding 21807 Mm.153272 NM_009366 ENSMUSG00000022010 Tsc22d1 AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22 - 14 D3|14 40.44 cM TSC22 domain family, member 1 protein-coding 66905 Mm.311696 NM_025836 ENSMUSG00000024197 Plin3 1300012C15Rik|M6prbp1|Tip47 - 17|17 D perilipin 3 protein-coding 106059 Mm.442457 NR_045309 ENSMUSG00000116220 A430088P11Rik - - 15 E1|15 RIKEN cDNA A430088P11 gene ncRNA 105244883 XR_869517 Gm40411 - - 6 G1|6 predicted gene, 40411 ncRNA 100504725 Mm.477716 Gm20994 - - Y|Y predicted gene, 20994 protein-coding 107464 Cpl2 Cpl-2 - - plasma corticosterone level 2 protein-coding 100504382 Gm14551 - - X|X 23.19 cM predicted gene 14551 pseudo 56022 D5Buc47 - - - DNA segment, Chr 5, Bucan 47 unknown 105243791 XR_876405 Gm39565 - - 17 A1|17 predicted gene, 39565 ncRNA 78312 Mm.188743 NR_130999 ENSMUSG00000102112 1810041H14Rik - - 14|14 E5 RIKEN cDNA 1810041H14 gene ncRNA 14170 Mm.3904 NM_008003 ENSMUSG00000031073 Fgf15 FGF19 - 7|7 F5 fibroblast growth factor 15 protein-coding 105246307 XR_876929 LOC105246307 - - 17 E1.3 uncharacterized LOC105246307 ncRNA 11554 Mm.46797 NM_007419 ENSMUSG00000035283 Adrb1 Adrb-1|beta-AR - 19 D2|19 51.96 cM adrenergic receptor, beta 1 protein-coding 72477 Mm.259688 NM_028248 ENSMUSG00000014353 Tmem87b 2610301K12Rik|2810431I02Rik|AU014804 - 2|2 F1 transmembrane protein 87B protein-coding 100416129 Gm17931 - - 7|7 E2 SET translocation pseudogene pseudo 102633290 XR_386560 Gm31151 - - 19 A|19 predicted gene, 31151 ncRNA 100415953 Gm17836 - - 3|3 E3 predicted gene, 17836 pseudo 102637499 XR_374578 Gm34291 - - 2 C1.3|2 predicted gene, 34291 ncRNA 108480 Ms93 MMS93 - - minisatellites detected by probe MMS93 other 102631915 Mm.443279 XR_001780889 Gm30127 - - 13 A3.3|13 predicted gene, 30127 ncRNA 102633666 XR_375000 AV099323 - - 2|2 F2 expressed sequence AV099323 ncRNA 432959 Gm5473 EG432959 - 15|15 D1 high mobility group box 1 pseudogene pseudo 359877 DXMgc24 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 24 unknown 102635135 XR_380833 Gm32552 - - 10 D2|10 predicted gene, 32552 ncRNA 105246291 XR_876866 Gm41595 - - 17 C|17 predicted gene, 41595 ncRNA 790956 NR_003280 Rs5-8s1 - - - 5.8S ribosomal RNA rRNA 105244644 XR_867992 ENSMUSG00000087200 Lrp8os3 Gm12908 - 4 C7|4 50.18 cM low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 3 ncRNA 108167694 XM_017313739 LOC108167694 - - 9 F4 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit delta-like protein-coding 268859 Mm.370334 NM_021477 ENSMUSG00000008658 Rbfox1 A2bp|A2bp1|Hrnbp1|fox-1 - 16 A1|16 3.34 cM RNA binding protein, fox-1 homolog (C. elegans) 1 protein-coding 320029 C130013I19Rik - - 19|19 RIKEN cDNA C130013I19 gene protein-coding 102638658 XR_388844 Gm35169 - - 11 B5|11 predicted gene, 35169 ncRNA 76294 Mm.33171 NM_029569 ENSMUSG00000031519 Asb5 1110018D09Rik - 8|8 B1.3 ankyrin repeat and SOCs box-containing 5 protein-coding 74013 Mm.292050 NM_028713 ENSMUSG00000025978 Rftn2 2700010E02Rik|3222401M22Rik - 1|1 C1.2 raftlin family member 2 protein-coding 102640622 XR_383424 Gm36641 - - 14 C1|14 predicted gene, 36641 ncRNA 100418140 Gm19028 - - 1|1 A5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked pseudogene pseudo 385493 Mm.328014 NM_001033480 ENSMUSG00000081044 AU015836 - - X|X C3 expressed sequence AU015836 ncRNA 74869 Mm.107646 4930447G04Rik - - 6|6 RIKEN cDNA 4930447G04 gene protein-coding 105245012 Gm40526 - - 9|9 predicted gene, 40526 ncRNA 74498 Mm.104789 NM_028976 ENSMUSG00000032513 Gorasp1 5430411C10Rik|GOLPH5|GRASP65|P65 - 9|9 F3 golgi reassembly stacking protein 1 protein-coding 100505386 Mm.331064 NM_001113419 ENSMUSG00000102422 Gm21949 Iqcj-schip1|Schip-1-iqcj|Schip1 - 3 E1|3 predicted gene, 21949 protein-coding 105246391 XR_877286 Gm41683 - - 18 B1|18 predicted gene, 41683 ncRNA 320110 Mm.386898 XR_104601 B230369F24Rik - - 1|1 H4 RIKEN cDNA B230369F24 gene unknown 100035383 Mohg7 - - - modifier of hg 7 unknown 109279887 LOC109279887 Mm41 - - VISTA enhancer mm41 biological-region 60831 D4Mit79 - - 4 39.4 cM DNA segment, Chr 4, Massachusetts Institute of Technology 79 unknown 268420 Mm.262056 NM_172943 ENSMUSG00000042650 Alkbh5 AW050020|AW215868|Abh5|E130207K11|Ofoxd - 11|11 B2 alkB homolog 5, RNA demethylase protein-coding 100417519 Gm14667 - - X|X A7.1 DDB1 and CUL4 associated factor 13 pseudogene pseudo 100417873 Gm18871 - - 12|12 C1 non-SMC element 1 homolog pseudogene pseudo 105243669 XR_001782778 Gm39500 Znf157 - X A1.3|X predicted gene, 39500 protein-coding 77610 Mm.417916 XR_001782625 C330002G04Rik - - 19|19 B RIKEN cDNA C330002G04 gene ncRNA 671242 Gm9525 - - 16 B1|16 predicted gene 9525 pseudo 258536 Mm.223076 NM_146543 ENSMUSG00000108534 Olfr1360 MOR256-10|MOR256-35 - 13|13 A3.1 olfactory receptor 1360 protein-coding 54723 Mm.172947 NM_018783 ENSMUSG00000029345 Tfip11 2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39 - 5|5 F tuftelin interacting protein 11 protein-coding 100035164 Avptaq2 - - 12 13.0 cM Avp transcript abundance QTL 2 unknown 105244503 Gm40098 - - 3|3 predicted gene, 40098 ncRNA 100034988 Ssta5 - - 3 42.04 cM susceptibility to Salmonella typhimurium antigens 5 unknown 66163 Mm.427576 NM_023167 ENSMUSG00000003299 Mrpl4 1110017G11Rik - 9|9 A3 mitochondrial ribosomal protein L4 protein-coding 105242836 XR_001780282 Gm38935 - - 11 C|11 predicted gene, 38935 ncRNA 100316811 NR_035451 ENSMUSG00000089424 Mir1930 mir-1930|mmu-mir-1930 - 10 C1|10 39.72 cM microRNA 1930 ncRNA 408189 Gm14129 Cstap4 - 2H|2 predicted gene 14129 protein-coding 102640081 XR_381341 Gm36236 - - 12 A1.3|12 predicted gene, 36236 ncRNA 105244070 XR_865915 Gm39748 - - 1 H6|1 predicted gene, 39748 ncRNA 665141 Gm11908 - - 4|4 A4 predicted gene 11908 pseudo 228357 Mm.275149 NM_172668 ENSMUSG00000027253 Lrp4 6430526J12Rik|D230026E03|Megf7|mdig - 2 E1|2 50.63 cM low density lipoprotein receptor-related protein 4 protein-coding 21969 Mm.217233 NM_009408 ENSMUSG00000070544 Top1 AI467334|D130064I21Rik|Top-1 - 2 H2|2 80.96 cM topoisomerase (DNA) I protein-coding 623859 Rps2-ps11 EG623859|Gm6456 - 9|9 F2 ribosomal protein S2, pseudogene 11 pseudo 102639688 Gm38522 - - 17|17 predicted gene, 38522 protein-coding 320167 Mm.274816 A330042M18Rik - - 11|11 RIKEN cDNA A330042M18 gene protein-coding 215280 Mm.223504 NM_153138 ENSMUSG00000075284 Wipf1 AI115543|D2Ertd120e|WIP|Waspip - 2 C3|2 43.68 cM WAS/WASL interacting protein family, member 1 protein-coding 100416166 Gm17952 - - 3|3 E1 predicted gene, 17952 pseudo 105244091 Gm39765 - - 2|2 predicted gene, 39765 ncRNA 268812 Gm5046 EG268812 - 15 D1|15 PQ loop repeat containing pseudogene pseudo 108312 Mmv13 Mmv-13 - - MCF endogenous virus 13 other 380878 Mm.327311 NM_001001449 ENSMUSG00000094237 AF067063 - - 13 D2.3|13 cDNA sequence AF067063 protein-coding 23801 Mm.41989 NM_011786 ENSMUSG00000020892 Aloxe3 e-LOX-3|eLOX-3 - 11 B3|11 42.38 cM arachidonate lipoxygenase 3 protein-coding 72947 Mm.256875 NM_028398 ENSMUSG00000020359 Phykpl 2900006B13Rik|Agxt2l2 - 11|11 B1.3 5-phosphohydroxy-L-lysine phospholyase protein-coding 73639 Mm.48851 NR_040695 ENSMUSG00000107014 1700126H18Rik - - 5|5 C3.1 RIKEN cDNA 1700126H18 gene ncRNA 100416934 Gm3729 100042219 - 6|6 B3 phosphoglycerate mutase 1 pseudogene pseudo 102639607 Gm35879 - - 15|15 predicted gene, 35879 ncRNA 100302649 Gm17811 - - 11|11 B4 lymphocyte antigen 6 complex, locus E pseudogene pseudo 27392 Mm.268911 NM_013784 ENSMUSG00000056536 Pign Gm20308|PIG-N - 1|1 E2.1 phosphatidylinositol glycan anchor biosynthesis, class N protein-coding 14007 Mm.398543 NM_010160 ENSMUSG00000002107 Celf2 B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3 - 2|2 A1 CUGBP, Elav-like family member 2 protein-coding 100036748 Mlca5 - - - modifier of locomotor activity 5 unknown 60955 DXMit82 - - X 25.69 cM DNA segment, Chr X, Massachusetts Institute of Technology 82 unknown 319803 Mm.386896 NM_177004 ENSMUSG00000114213 A430090L17Rik - - 13|13 D2.2 RIKEN cDNA A430090L17 gene ncRNA 105246243 XR_876700 Gm41555 - - 17 A3.3|17 predicted gene, 41555 ncRNA 100417027 Gm18370 - - 14|14 E5 pericentriolar material 1 pseudogene pseudo 20652 Mm.28099 NM_009230 ENSMUSG00000026600 Soat1 8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid - 1 G3|1 67.71 cM sterol O-acyltransferase 1 protein-coding 435256 Rpl9-ps2 Gm12172 - 11|11 B1.1 ribosomal protein L9, pseudogene 2 pseudo 105245244 XR_871904 Gm40723 - - 10 C1|10 predicted gene, 40723 ncRNA 70393 Mm.386799 NR_045499 ENSMUSG00000018378 2210416O15Rik - - 11|11 C RIKEN cDNA 2210416O15 gene ncRNA 85069 D5Mit77 - - 5 20.61 cM DNA segment, Chr 5, Massachusetts Institute of Technology 77 unknown 76389 Mm.67300 NM_023816 ENSMUSG00000020481 Ankrd36 1700008J08Rik|1700012M14Rik|Ankrd48 - 11|11 A1 ankyrin repeat domain 36 protein-coding 359918 DXMgc51 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 51 unknown 666982 Gm8402 EG666982 - X F3|X lysyl-tRNA synthetase pseudogene pseudo 105246314 XR_876941 Gm41616 - - 17 E1.3|17 predicted gene, 41616 ncRNA 73314 Mm.52613 NM_028499 ENSMUSG00000023151 Lrrc69 1700034K16Rik - 4|4 A1 leucine rich repeat containing 69 protein-coding 14322 Fth-ps3 EG666960|Gm8382 - 8|8 C3 ferritin heavy chain, pseudogene 3 pseudo 109743 Hst5 - - - hybrid sterility 5 protein-coding 654810 Mm.209580 NR_028329 ENSMUSG00000085628 Appbp2os D630032N06Rik - 11|11 C amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand ncRNA 106763 Mm.297613 NM_175351 ENSMUSG00000015599 Ttbk1 AU017937|AW048023|C330008L01Rik - 17|17 C tau tubulin kinase 1 protein-coding 116702 Listr1 - - 5 41.45 cM listeriosis resistance 1 unknown 69149 Mm.25946 NM_026962 ENSMUSG00000025893 Kbtbd3 2200003A07Rik|Bklhd3 - 9|9 A1 kelch repeat and BTB (POZ) domain containing 3 protein-coding 102636049 Mm.190648 XR_877234 Gm33228 - - 18 A2|18 predicted gene, 33228 ncRNA 667129 Mm.480263 NM_001166737 ENSMUSG00000096663 Vmn1r103 EG667129|Gm8474 - 7|7 A3 vomeronasal 1 receptor 103 protein-coding 100043244 Gm4310 - - 10 D1|10 THO complex 4 pseudogene pseudo 108168324 XR_001782151 Gm46581 - - 17 E1.3|17 predicted gene, 46581 ncRNA 67312 1700040B14Rik - - 8|8 RIKEN cDNA 1700040B14 gene protein-coding 26372 Mm.89987 NM_011929 ENSMUSG00000029016 Clcn6 AI850629|Clc6 - 4 E2|4 78.67 cM chloride channel, voltage-sensitive 6 protein-coding 74702 Mm.410814 NR_040611 ENSMUSG00000085496 4930517E11Rik - - 2|2 F1 RIKEN cDNA 4930517E11 gene ncRNA 66874 Mm.41903 NM_025818 ENSMUSG00000020783 Ncbp3 1200014J11Rik|C130061O14Rik|C78393 - 11|11 B4 nuclear cap binding subunit 3 protein-coding 77573 Mm.41372 NM_029929 ENSMUSG00000029434 Vps33a 3830421M04Rik|AI503300|AW048546|AW554476|bf - 5 F|5 63.03 cM VPS33A CORVET/HOPS core subunit protein-coding 102632387 XR_385062 Gm30474 - - 16 C4|16 predicted gene, 30474 ncRNA 105245953 XR_875348 Gm41325 - - 15 D1|15 predicted gene, 41325 ncRNA 108168003 XM_017315325 Gm46353 - - 12 C2|12 predicted gene, 46353 protein-coding 210933 Mm.336569 NM_175642 ENSMUSG00000033569 Adgrb3 A830096D10Rik|Bai3 - 1|1 A5 adhesion G protein-coupled receptor B3 protein-coding 102632738 XR_001783550 Gm30733 - - 2 H3|2 predicted gene, 30733 protein-coding 112228 Bts2 - - 6 12.36 cM bladder tumor susceptibility 2 unknown 102640843 Mm.376621 XR_376947 Gm36814 - - 5 C1|5 predicted gene, 36814 ncRNA 236643 Mm.246606 NM_177704 ENSMUSG00000054453 Sytl5 slp5 - X|X A1.1 synaptotagmin-like 5 protein-coding 319756 Mm.207651 9330118A15Rik - - 4|4 RIKEN cDNA 9330118A15 gene protein-coding 75211 Mm.399337 NR_040566 4930542D17Rik - - 16|16 B5 RIKEN cDNA 4930542D17 gene ncRNA 110926 Hmgn1-rs19 Hmg14-rs19 - - high mobility group nucleosomal binding domain 1, related sequence 19 protein-coding 319972 A430110M15Rik - - 9|9 RIKEN cDNA A430110M15 gene protein-coding 100036126 Nhil2 - - 16 33.01 cM non-heme iron levels 2 unknown 102637862 XM_006523127 Gm34566 - - 16 C3.3|16 predicted gene, 34566 protein-coding 667501 Gm8670 EG667501 - 16|16 B5 TWIST neighbor pseudogene pseudo 100035919 Knyw6 - - - kidney weight 6 unknown 105246412 XR_877330 Gm41702 - - 18 B3|18 predicted gene, 41702 ncRNA 100416021 Gm17235 - - 11|11 B5 annexin A2 pseudogene pseudo 16391 Mm.2032 NM_008394 ENSMUSG00000002325 Irf9 Irf-9|Isgf3g|p48 - 14 C3|14 28.19 cM interferon regulatory factor 9 protein-coding 104130 Mm.30084 NM_019435 ENSMUSG00000031059 Ndufb11 CI-ESSS|D5Bwg0566e|D5Bwg0577e|NP15.6|Np15|p15.6 - X|X A1.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11 protein-coding 17034 Lx - - - luxate unknown 52749 D17Wsu196e - - - DNA segment, Chr 17, Wayne State University 196, expressed unknown 110763 Igkj5 Igk-J5 - 6 C1|6 32.04 cM immunoglobulin kappa joining 5 other 74257 Mm.32883 NM_028841 ENSMUSG00000025875 Tspan17 2210021G21Rik|AI047581|Fbxo23|Tm4sf17 - 13|13 B1 tetraspanin 17 protein-coding 18526 Mm.242644 NM_011043 ENSMUSG00000049100 Pcdh10 6430521D13Rik|6430703F07Rik|OL-pc|mKIAA1400 - 3|3 B protocadherin 10 protein-coding 105247106 XR_881171 Gm42264 - - 4 A3|4 predicted gene, 42264 ncRNA 74383 Mm.25610 NM_028475 ENSMUSG00000042520 Ubap2l 3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144 - 3 F1|3 ubiquitin-associated protein 2-like protein-coding 102640029 XR_385508 Gm36199 - - 17 A3.3|17 predicted gene, 36199 ncRNA 69597 Mm.426052 NM_027130 ENSMUSG00000024527 Afg3l2 2310036I02Rik|AW260507|Emv66|par - 18|18 E1 AFG3-like AAA ATPase 2 protein-coding 260400 Thypr1 - - 11 21.96 cM thymocyte proliferative response 1 unknown 668815 Gm9377 EG668815 - 7|7 B5 high mobility group box 2 pseudogene pseudo 108167599 Gm15183 - - 1 C4|1 39.16 cM 40S ribosomal protein S25 pseudogene pseudo 100043184 Gm11703 - - 11|11 E2 predicted gene 11703 protein-coding 360092 D17Jcs46 - - - DNA segment, Chr 17, John C. Schimenti 46 unknown 71685 Mm.271953 NM_027864 ENSMUSG00000024064 Galnt14 0610033M06Rik - 17|17 E2 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 226525 Mm.235028 NM_177644 ENSMUSG00000070565 Rasal2 6530401P13|A330066M24Rik - 1|1 G3-H1 RAS protein activator like 2 protein-coding 381678 Mm.332765 NM_001005426 ENSMUSG00000037108 Zcwpw1 Gm1053 - 5|5 G2 zinc finger, CW type with PWWP domain 1 protein-coding 442840 Mm.76725 A330017A19Rik - - 17|17 C RIKEN cDNA A330017A19 gene unknown 108169126 n-TDgtc1 Trnad-guc|n-Td1 - 5 E4|5 nuclear encoded tRNA aspartic acid 1 (anticodon GTC) tRNA 100042143 Mm.149463 NR_152198 Gm3693 - - 12 D1|12 predicted gene 3693 ncRNA 100039709 Gm2383 - - 1 A3|1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100125870 Gm20574 Cyp2ac1-ps - 17|17 B2 cytochrome P450, family 2, subfamily ac, polypeptide 1, pseudogene pseudo 116885 Pgia10 - - 16 48.23 cM proteoglycan induced arthritis 10 unknown 55951 Mm.288510 NM_018819 ENSMUSG00000023861 Mpc1 0610006G08Rik|3830411I18Rik|Brp44l - 17 A1|17 4.92 cM mitochondrial pyruvate carrier 1 protein-coding 102636029 Gm29293 - - 7|7 predicted gene 29293 pseudo 17906 Mm.1529 NM_010861 ENSMUSG00000013936 Myl2 MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc - 5|5 F myosin, light polypeptide 2, regulatory, cardiac, slow protein-coding 258162 Olfr500-ps1 MOR204-25P - 7|7 E3 olfactory receptor 500, pseudogene 1 pseudo 105244591 XR_867777 Gm40181 - - 3 H3|3 predicted gene, 40181 ncRNA 16969 Mm.20920 NM_010731 ENSMUSG00000035011 Zbtb7a 9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7 - 10|10 C1 zinc finger and BTB domain containing 7a protein-coding 384926 Tpi-rs4 EG384926|Tpi-4 - 9 A4|9 17.34 cM triosephosphate isomerase related sequence 4 pseudo 56194 Mm.257474 NM_018785 ENSMUSG00000061136 Prpf40a 2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3 - 2|2 C1.1 pre-mRNA processing factor 40A protein-coding 109279907 LOC109279907 Mm100 - - VISTA enhancer mm100 biological-region 62865 D11Mit289 - - 11 58.98 cM DNA segment, Chr 11, Massachusetts Institute of Technology 289 unknown 21526 Tcra-V2.2 - - - T cell receptor alpha, variable 2.2 other 102459 AI255207 - - - expressed sequence AI255207 protein-coding 100417338 Gm18541 - - 9|9 C ADP-ribosylation factor-like 1 pseudogene pseudo 108492 Ms94 MMS94 - - minisatellites detected by probe MMS94 other 15233 Mm.157442 NM_013547 ENSMUSG00000022821 Hgd Hgo|aku - 16 B3|16 26.4 cM homogentisate 1, 2-dioxygenase protein-coding 105243515 Gm39414 - - 11|11 predicted gene, 39414 ncRNA 629750 Mm.390396 NR_033523 Gm11517 - - 11|11 D ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene pseudo 102632 Mm.41274 NM_175324 ENSMUSG00000090150 Acad11 5730439E10Rik|AI987948 - 9|9 F1 acyl-Coenzyme A dehydrogenase family, member 11 protein-coding 665586 Gm7701 EG665586 - 18|18 A2 PRP19/PSO4 pre-mRNA processing factor 19 homolog pseudogene pseudo 102638704 XR_373705 Gm35200 - - 1 H3|1 predicted gene, 35200 ncRNA 333654 Mm.333640 NM_001010836 ENSMUSG00000040734 Ppp1r13l AV260376|IASPP|Nkip1|wa3 - 7 A3|7 9.62 cM protein phosphatase 1, regulatory (inhibitor) subunit 13 like protein-coding 433141 Rpsa-ps7 EG433141|Gm5498 - 17|17 E3 ribosomal protein SA, pseudogene 7 pseudo 102636025 XR_390873 Gm33214 - - 4 D3|4 predicted gene, 33214 ncRNA 61485 D7Mit155 - - 7 19.31 cM DNA segment, Chr 7, Massachusetts Institute of Technology 155 unknown 433386 Mm.338103 NM_001033547 ENSMUSG00000043429 Ccdc185 4922505E12Rik - 1|1 H5 coiled-coil domain containing 185 protein-coding 102634561 XR_001778120 Gm14377 - - 7 B3|7 30.71 cM predicted gene 14377 ncRNA 67788 Mm.181610 NM_026377 ENSMUSG00000025066 Sfr1 6330577E15Rik|Meir5 - 19 D1|19 SWI5 dependent recombination repair 1 protein-coding 109280038 LOC109280038 Mm291 - - VISTA enhancer mm291 biological-region 100503803 Gm17434 - - 5|5 10.28 cM predicted gene, 17434 protein-coding 268445 Mm.39296 NM_172945 ENSMUSG00000037907 Ankrd13b AW124583|B930093C12Rik - 11|11 B5 ankyrin repeat domain 13b protein-coding 100034940 Pfat4 - - 15 34.16 cM predicted fat percentage 4 unknown 105242750 XR_869394 Gm38882 - - 6 F1|6 predicted gene, 38882 ncRNA 100628591 NR_130342 ENSMUSG00000092990 Mir466q Mir446q|mmu-mir-466q|mu-mir-446q - 3 A3|3 12.19 cM microRNA 466q ncRNA 56280 Mm.29517 NM_025500 ENSMUSG00000028622 Mrpl37 2300004O14Rik|AI132596|MRP-L2|Rpml2 - 4|4 C7 mitochondrial ribosomal protein L37 protein-coding 61952 D6Mit339 - - 6 66.59 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 339 unknown 94184 Mm.171484 NM_053181 ENSMUSG00000022680 Pdxdc1 2210010A19Rik|AA415817|Kiaa0251-hp - 16|16 A1 pyridoxal-dependent decarboxylase domain containing 1 protein-coding 100035981 Smtw2 - - - small testis weight 2 unknown 195040 Mm.383431 NM_199199 ENSMUSG00000051232 Tmem199 AI316787|AI848469|R74819 - 11|11 B5 transmembrane protein 199 protein-coding 66694 Mm.181933 NM_025710 ENSMUSG00000038462 Uqcrfs1 4430402G14Rik|AI875505 - 13|13 A3.2 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 109279991 LOC109279991 Mm761 - - VISTA enhancer mm761 biological-region 242642 Mm.279897 NM_146256 ENSMUSG00000043155 Hpdl A830048M07Rik|BC034099|Gloxd1 - 4|4 D1 4-hydroxyphenylpyruvate dioxygenase-like protein-coding 668654 Gm9287 EG668654 - 14|14 E2.1 predicted gene 9287 pseudo 76646 Mm.358777 NM_029687 ENSMUSG00000035295 Wdr38 1700123D08Rik - 2|2 B WD repeat domain 38 protein-coding 258829 Mm.451665 NM_146832 ENSMUSG00000096009 Olfr134 MOR256-5 - 17|17 B1 olfactory receptor 134 protein-coding 235402 Mm.246605 NM_181074 ENSMUSG00000049556 Lingo1 4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201 - 9|9 B leucine rich repeat and Ig domain containing 1 protein-coding 69663 Mm.5267 NM_027156 ENSMUSG00000029504 Ddx51 2310061O04Rik|AA537002|C81583|R75505 - 5|5 F DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 protein-coding 238725 Mm.167172 NM_175495 ENSMUSG00000045509 Gpr150 C030001A19Rik|PGR11 - 13|13 C1 G protein-coupled receptor 150 protein-coding 100034899 Tchol1 Tcho-1 - 3 43.71 cM total cholesterol level 1 unknown 102631959 XR_389109 Gm30158 - - 11 E2|11 predicted gene, 30158 ncRNA 387227 NR_029716 ENSMUSG00000065490 Mir30c-1 Mirn30c|Mirn30c-1|mir-30c-1 - 4|4 D2.2 microRNA 30c-1 ncRNA 102640542 XR_868752 Gm36579 - - 5 G3|5 predicted gene, 36579 ncRNA 94282 Mm.121485 NM_178639 ENSMUSG00000033720 Sfxn5 C230001H08Rik - 6 C3|6 37.23 cM sideroflexin 5 protein-coding 17837 Mm.479223 NM_008646 ENSMUSG00000030131 Mug2 Cpamd8 - 6|6 F1 murinoglobulin 2 protein-coding 320727 Mm.260105 NM_001081113 ENSMUSG00000040029 Ipo8 6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8 - 6|6 G3 importin 8 protein-coding 102635293 XR_387420 Gm32670 - - 1 E4|1 predicted gene, 32670 ncRNA 21857 Mm.8245 NM_011593 ENSMUSG00000001131 Timp1 Clgi|EPA|TIMP-1|TPA-S1|Timp - X A1.3|X 16.38 cM tissue inhibitor of metalloproteinase 1 protein-coding 544905 Mm.313360 LOC544905 - - 12|12 F2 Ig heavy chain V region other 100047123 Mm.466711 NR_152205 Gm15743 - - 16|16 B2 predicted gene 15743 ncRNA 622737 Gm6350 EG622737 - 3|3 A1 heterogeneous nuclear ribonucleoprotein K pseudogene pseudo 102639267 Mm.421258 XR_001780995 Gm35618 - - 13 C1|13 predicted gene, 35618 ncRNA 13717 Mm.275320 NM_007925 ENSMUSG00000029675 Eln AI385707|AI480567|E030024M20Rik - 5 G2|5 74.76 cM elastin protein-coding 100034724 Rpl15-ps3 Gm15505 - 9 A3|9 ribosomal protein L15, pseudogene 3 pseudo 114747 Daq17 D2.1 - 2 34.9 cM directional asymmetry QTL 17 unknown 100416243 Stambp-ps1 Gm17998 - 8|8 B3.1 STAM binding protein, pseudogene 1 pseudo 76806 2700029L08Rik - - 5|5 RIKEN cDNA 2700029L08 gene protein-coding 109495 Alcp9 - - 5 26.02 cM alcohol preference locus 9, male specific unknown 100041795 Vmn2r-ps155 - - Y|Y E vomeronasal 2, receptor, pseudogene 155 pseudo 75482 Mm.46175 NM_029307 ENSMUSG00000017832 Hspb9 1700007H20Rik - 11|11 D heat shock protein, alpha-crystallin-related, B9 protein-coding 102638645 Gm35159 - - 13|13 predicted gene, 35159 ncRNA 99663 Mm.442050 NM_207208 ENSMUSG00000068547 Clca4a 9130020L07Rik|AI504701|Clca4|Clca6 - 3|3 H2 chloride channel accessory 4A protein-coding 110169 Npm1-rs - - - nucleophosmin 1, related sequence protein-coding 170654 Mm.196689 NM_130873 ENSMUSG00000043982 Krtap19-4 Krtap16-4 - 16|16 C3.3 keratin associated protein 19-4 protein-coding 108167683 XR_001779300 Gm46131 - - 9 F1|9 predicted gene, 46131 ncRNA 359968 DXMgc105 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 105 unknown 100415991 Gm17859 - - X|X A4 predicted gene, 17859 pseudo 442815 Mm.210048 A230065C20Rik - - 14|14 A1 RIKEN cDNA A230065C20 gene unknown 102641161 LOC102641161 - - - PRELI domain-containing protein 1, mitochondrial protein-coding 492958 Cocia9 - - 7 32.84 cM cocaine induced activation 9 unknown 100043720 Gm4605 - - 6|6 E2 translocase of inner mitochondrial membrane 23 homolog pseudogene pseudo 52104 D16Ggc1e - - - DNA segment, Chr 16, G. Consalez 1, expressed unknown 100418248 Gm19098 - - 14|14 D3 X-prolyl aminopeptidase (aminopeptidase P) 1, soluble pseudogene pseudo 15408 Mm.57221 NM_008267 ENSMUSG00000049604 Hoxb13 - - 11 D|11 59.63 cM homeobox B13 protein-coding 66381 Mm.24846 NM_025525 ENSMUSG00000098134 Rnf113a2 2310020H19Rik|AI426758|Rnf113a - 12|12 D1 ring finger protein 113A2 protein-coding 330064 Mm.205463 NM_177870 ENSMUSG00000006641 Slc5a6 E430023I20 - 5|5 B1 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 protein-coding 100503412 Gm6565 EG625221 - 6|6 D3 ubiquitin-conjugating enzyme E2 variant 2 pseudogene pseudo 225030 Mm.223506 NM_153512 ENSMUSG00000045053 Kcng3 KV6.3|Kv10.1a|Kv10.1b - 17|17 E4 potassium voltage-gated channel, subfamily G, member 3 protein-coding 27812 304D23F - - - DNA segment, 304D23F (Research Genetics) unknown 18484 Mm.5121 NM_013626 ENSMUSG00000026335 Pam PHM - 1 D|1 47.76 cM peptidylglycine alpha-amidating monooxygenase protein-coding 258354 Mm.377451 NM_146357 ENSMUSG00000061361 Olfr168 MOR271-1 - 16|16 A3 olfactory receptor 168 protein-coding 70605 Mm.36885 NM_027476 ENSMUSG00000006463 Zdhhc24 5730496N17Rik|Leng4 - 19|19 A zinc finger, DHHC domain containing 24 protein-coding 625068 Mm.359168 NM_001081448 ENSMUSG00000070601 Vmn2r84 EG625068 - 10|10 D3 vomeronasal 2, receptor 84 protein-coding 100034970 Hyplip2 - - - hyperlipidemia 2 unknown 102636570 XR_375037 Gm33599 - - 2 G1|2 predicted gene, 33599 ncRNA 72391 Mm.272394 NM_028222 ENSMUSG00000037628 Cdkn3 2410006H10Rik|KAP - 14|14 C1 cyclin-dependent kinase inhibitor 3 protein-coding 105245249 XR_871914 Gm40728 - - 10 C1|10 predicted gene, 40728 ncRNA 382407 Gad1-ps Gad-1ps - 10 D1|10 51.14 cM glutamate decarboxylase 1, pseudogene pseudo 547215 Gm6027 EG547215 - X C1|X NSA2 ribosome biogenesis homolog pseudogene pseudo 100312554 Vmn1r-ps125 Gm11323|Gm11332 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 125 pseudo 105245420 Gm40878 - - 12|12 predicted gene, 40878 protein-coding 111307 Hmgn1-rs13 Hmg14-rs13 - - high mobility group nucleosomal binding domain 1, related sequence 13 pseudo 27218 Mm.103648 NM_013730 ENSMUSG00000015316 Slamf1 4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam - 1 H3|1 79.54 cM signaling lymphocytic activation molecule family member 1 protein-coding 110809 Mm.391719 NM_173374 ENSMUSG00000018379 Srsf1 1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1 - 11 C|11 52.4 cM serine/arginine-rich splicing factor 1 protein-coding 61252 D2Mit125 - - 2 39.53 cM DNA segment, Chr 2, Massachusetts Institute of Technology 125 unknown 102633464 XR_383821 Gm31282 - - 15 A1|15 predicted gene, 31282 ncRNA 53723 D9H3S92 D3S92h - - DNA segment, Chr 9, human D3S92 unknown 70481 Mm.444348 NM_027438 ENSMUSG00000054383 Pnma1 5730402C15Rik - 12|12 D1 paraneoplastic antigen MA1 protein-coding 269723 Mm.441252 BC030343 - - 5|5 G2 cDNA sequence BC030343 protein-coding 100035832 Diobq - - - diet-induced obesity QTL unknown 100036185 Lptl2 - - - LPS-induced pulmonary TNF-alpha locus 2 unknown 100503104 Mm.442735 NR_045322 ENSMUSG00000097990 Gm19557 - - 19 C3|19 39.65 cM predicted gene, 19557 ncRNA 105244037 Gm39722 - - 1|1 predicted gene, 39722 protein-coding 102635073 Gm32501 - - 7|7 predicted gene, 32501 ncRNA 53680 DYByu5 D0Byu5 - - DNA segment, Chr Y, Brigham Young University 5 unknown 66788 5430414B12Rik - - 1|1 RIKEN cDNA 5430414B12 gene protein-coding 102637326 Gm28161 - - Y|Y predicted gene 28161 ncRNA 62183 D15Mit33 - - 15 39.43 cM DNA segment, Chr 15, Massachusetts Institute of Technology 33 unknown 68918 Mm.473736 NM_197988 ENSMUSG00000043687 1190005I06Rik - - 8|8 E1 RIKEN cDNA 1190005I06 gene protein-coding 85164 DXMit1001 D5Mit422 - X 43.72 cM DNA Segment, Chr X, Massachusetts Institute of Technology 1001 unknown 217038 Mm.280825 NM_145433 ENSMUSG00000018405 Mrm1 A530065E19Rik - 11|11 C mitochondrial rRNA methyltransferase 1 protein-coding 434396 Mm.118836 NM_001033783 ENSMUSG00000074448 Gm5615 EG434396|Pate-H|Pate9 - 9 A4|9 predicted gene 5615 protein-coding 102631660 XR_375431 Gm29943 - - 2 H4|2 predicted gene, 29943 ncRNA 16362 Mm.105218 NM_008390 ENSMUSG00000018899 Irf1 AU020929|Irf-1 - 11 B1.3|11 32.0 cM interferon regulatory factor 1 protein-coding 244631 Mm.27627 NM_173432 ENSMUSG00000048310 Pskh1 AW539964|E130013P03Rik|b2b1230Clo - 8|8 D3 protein serine kinase H1 protein-coding 102639503 Gm35804 - - 3|3 predicted gene, 35804 ncRNA 100382 Mm.461024 NR_030671 AW011738 - - 4|4 E2 expressed sequence AW011738 ncRNA 108168884 Mm.490259 XM_017319857 Gm37500 - - 3 F2.1|3 predicted gene, 37500 protein-coding 102640068 XR_384726 Gm36224 - - 16 B1|16 predicted gene, 36224 ncRNA 19531 Rb(3.8)2Rma Rb2Rma - - Robertsonian translocation, Chr 3 and 8, Universita di Roma 2 other 268448 Mm.274329 NM_174852 ENSMUSG00000037791 Phf12 2410142K10Rik|F630045O13|PF1|mKIAA1523 - 11|11 B5 PHD finger protein 12 protein-coding 100040745 Rpl17-ps3 Gm10164 - 12|12 C2 ribosomal protein L17, pseudogene 3 pseudo 100043523 Mm.482055 NM_001167151 ENSMUSG00000094757 Gm4498 Vmn1r97 - 7 A3|7 predicted gene 4498 protein-coding 100036414 Mfat8 - - - M-line adiposity tissue, general adiposity 8 unknown 100417975 Gm20952 - - 18|18 B1 chaperonin containing Tcp1, subunit 7 (eta) pseudogene pseudo 620562 Gm12152 - - 11|11 B1.1 predicted gene 12152 pseudo 101669761 Mm.454052 NR_103513 Gm15694 - - 16 B2|16 22.4 cM NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a), pseudogene pseudo 675507 Gm9644 - - 8 C1|8 predicted gene 9644 pseudo 622733 Olfr764-ps1 Gm6349|MOR115-6_p|Olfr227|Olfr227-ps1|Olfr764 - 10|10 D3 olfactory receptor 764, pseudogene 1 pseudo 100049079 Find1 - - - fat induced diabetes 1 unknown 105246468 XR_877482 Gm41753 - - 18 E1|18 predicted gene, 41753 ncRNA 50529 Mm.193040 NM_025305 ENSMUSG00000046756 Mrps7 MRP-S7|Rpms7|S7mt - 11|11 E2 mitchondrial ribosomal protein S7 protein-coding 228608 Mm.136586 NM_145533 ENSMUSG00000027333 Smox B130066H01Rik|PAO|PAOh1|SMO - 2|2 F1 spermine oxidase protein-coding 108169054 XM_017321219 Gm46915 - - 5 E2|5 predicted gene, 46915 protein-coding 100302529 NR_028091 Snord72 MBII-240 - 15|15 A1 small nucleolar RNA, C/D box 72 snoRNA 100504173 Gm15466 - - 3 A1|3 2.21 cM predicted gene 15466 pseudo 574528 Gm11507 Hr6bn - 11|11 C ubiquitin-conjugating enzyme MHR6BN pseudogene pseudo 666256 Zbed4-ps1 EG666256|Gm8007 - 7|7 A1 zinc finger, BED type containing 4, pseudogene 1 pseudo 15975 Mm.502 NM_010508 ENSMUSG00000022967 Ifnar1 Ifar|Ifnar|Ifrc|Infar - 16 C3.3|16 52.98 cM interferon (alpha and beta) receptor 1 protein-coding 619653 Gm6091 EG619653 - 8|8 E2 thymidine kinase 1 pseudogene pseudo 18604 Mm.29768 NM_133667 ENSMUSG00000038967 Pdk2 - - 11 D|11 59.01 cM pyruvate dehydrogenase kinase, isoenzyme 2 protein-coding 17218 Mm.5048 NM_008566 ENSMUSG00000005410 Mcm5 AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46 - 8|8 C1 minichromosome maintenance complex component 5 protein-coding 546642 Gm5960 - - 15|15 D3 predicted gene 5960 pseudo 102638836 XR_879071 Gm35305 - - 8 C3|8 predicted gene, 35305 ncRNA 102639228 XR_878144 Gm35587 - - X C3|X predicted gene, 35587 ncRNA 78226 Mm.109480 4930588D02Rik - - 15|15 RIKEN cDNA 4930588D02 gene protein-coding 100502590 Mm.449990 NM_001195189 ENSMUSG00000049160 Tex50 4930469G21Rik - 1|1 H2.1 testis expressed 50 protein-coding 19817 NR_030687 ENSMUSG00000065037 Rn7sk - - 9 E1|9 RNA, 7SK, nuclear snRNA 101772 Mm.26700 NM_178642 ENSMUSG00000031075 Ano1 Tmem16a - 7|7 F5 anoctamin 1, calcium activated chloride channel protein-coding 215641 Mm.327999 NM_173783 ENSMUSG00000067649 Mageb18 B430216B18Rik - X|X C2-C3 melanoma antigen family B, 18 protein-coding 27885 D9Mgc43 ET5 - 9 54.57 cM DNA segment, Chr 9, MRC UK Mouse Genome Centre 43 unknown 320174 Mm.393122 NR_045195 A830082K12Rik - - 13|13 C1 RIKEN cDNA A830082K12 gene ncRNA 100049609 Fmtq13 - - - femur mechanical trait QTL 13 unknown 102637934 XR_870452 ENSMUSG00000109966 Gm34623 Gm45648 - 8 B3.1|8 predicted gene, 34623 ncRNA 100040319 Gm2709 - - 1|1 A4 KH domain containing 1 pseudogene pseudo 102633059 Gm30976 - - 11|11 predicted gene, 30976 pseudo 102633709 XR_379585 Gm31469 - - 9 C|9 predicted gene, 31469 ncRNA 777682 Ighd5-1 Gm17483 - 12|12 F1 immunoglobulin heavy diversity 5-1 pseudo 109873 Tthy - - - thymocyte alloantigen protein-coding 20334 Mm.491137 NM_009147 ENSMUSG00000020986 Sec23a Msec23|Sec23r - 12|12 C1 SEC23 homolog A, COPII coat complex component protein-coding 61425 D5Mit224 - - 5 82.55 cM DNA segment, Chr 5, Massachusetts Institute of Technology 224 unknown 245038 Mm.26361 NM_172928 ENSMUSG00000032500 Dclk3 BC056929|C730036H08|Dcamkl3 - 9|9 F3 doublecortin-like kinase 3 protein-coding 70458 Mm.234165 NM_183287 ENSMUSG00000049916 2610318N02Rik AL033325 - 16|16 A3 RIKEN cDNA 2610318N02 gene protein-coding 20669 Mm.261595 NM_011440 ENSMUSG00000053747 Sox14 - - 9 E3.3|9 52.11 cM SRY (sex determining region Y)-box 14 protein-coding 241158 Mm.108280 NM_172850 ENSMUSG00000034212 Ankmy1 4930483I10Rik|ZMYND13 - 1|1 D ankyrin repeat and MYND domain containing 1 protein-coding 668923 Mm.393876 NM_001177550 ENSMUSG00000068130 Zfp442 ZIPO-II - 2 G3|2 zinc finger protein 442 protein-coding 404289 Mm.279185 NM_207546 ENSMUSG00000097425 Vmn1r181 V1rd20 - 7|7 A3 vomeronasal 1 receptor 181 protein-coding 112178 Afpq1 - - - abdominal fat percent QTL 1 unknown 433845 Mm.309092 Gm10481 - - 5 A1|5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 67590 Mm.60758 NM_026260 ENSMUSG00000025008 Tctn3 4930521E07Rik|AI197391|Tect3 - 19|19 C3 tectonic family member 3 protein-coding 109955 P5Ehs1 - - - protein, Chr 5, NIEHS 1 protein-coding 61828 D2Mit328 - - 2 42.89 cM DNA segment, Chr 2, Massachusetts Institute of Technology 328 unknown 72157 Mm.217764 NM_028132 ENSMUSG00000025791 Pgm2 2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1 - 4 C6|4 45.71 cM phosphoglucomutase 2 protein-coding 66146 Mm.99793 NM_025382 ENSMUSG00000028826 Tmem57 1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1 - 4 D3|4 67.11 cM transmembrane protein 57 protein-coding 108853 Mm.55082 NM_175374 ENSMUSG00000019774 Mtrf1l 9130004K12Rik - 10|10 A1 mitochondrial translational release factor 1-like protein-coding 269683 Mm.136946 NM_207252 ENSMUSG00000085271 E130006D01Rik Gm16018|Gm681 - 5|5 F RIKEN cDNA E130006D01 gene ncRNA 100534341 Gm21032 - - 7|7 B4 predicted gene, 21032 pseudo 665564 Gm7690 EG665564 - 1|1 A3 high mobility group box transcription factor 1 pseudogene pseudo 98386 Mm.4538 NM_133815 ENSMUSG00000004880 Lbr AI505894|ic - 1 H5|1 84.89 cM lamin B receptor protein-coding 75428 3100002H20Rik - - 15|15 RIKEN cDNA 3100002H20 gene protein-coding 211331 Mm.313452 Ighv1-54 EG211331|Gm4770|VH - 12|12 F2 immunoglobulin heavy variable V1-54 other 76971 Mm.290727 NM_175250 ENSMUSG00000030378 Sult2a8 2810007J24Rik|mL-STL - 7|7 A1 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8 protein-coding 319872 9430087C24Rik - - 8|8 RIKEN cDNA 9430087C24 gene protein-coding 102637462 XR_877010 Gm34265 - - 17 E3-E4|17 predicted gene, 34265 ncRNA 97877 C79741 - - - expressed sequence C79741 protein-coding 100416889 Gm18305 - - 10|10 B1 sperm specific antigen 2 pseudogene pseudo 12922 Mm.236081 NM_009953 ENSMUSG00000003476 Crhr2 CRF-R2|CRFR2alpha|CRFR2beta|Crfr2 - 6 B3|6 27.33 cM corticotropin releasing hormone receptor 2 protein-coding 624893 Gm6536 EG624893 - 14|14 C1 predicted gene 6536 pseudo 102633277 XR_373860 Gm38452 - - 1 H6|1 predicted gene, 38452 ncRNA 105243457 XR_870927 Gm39373 - - 9 D|9 predicted gene, 39373 ncRNA 102637515 XR_376437 LOC102637515 - - 4 C6 uncharacterized LOC102637515 ncRNA 102639980 XR_874703 Gm36165 - - 14 D1|14 predicted gene, 36165 ncRNA 71697 0710008F09Rik - - 9|9 RIKEN cDNA 0710008F09 gene protein-coding 232345 Mm.30151 NM_175628 ENSMUSG00000030111 A2m A2mp - 6 F1|6 57.49 cM alpha-2-macroglobulin protein-coding 105246712 XR_878552 Gm41956 - - 1 E4|1 predicted gene, 41956 ncRNA 109777 Act6 Act-6 - - actin related gene 6 protein-coding 16294 In(5)6H-d In(5)6H|In6H|Rw - - inversion, Chr 5, Harwell 6, distal other 16272 In(2)5Rk-d In(2)5Rk|In5Rk - - inversion, Chr 2, Roderick 5, distal other 664907 Gm7399 EG664907 - 10|10 B4 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 105245844 XR_874908 Gm41233 - - 14 E2.3|14 predicted gene, 41233 ncRNA 102632891 XR_374345 Gm30848 - - 2 B|2 predicted gene, 30848 ncRNA 100417203 Gm18447 - - 1|1 E2.1 crumbs homolog 1 pseudogene pseudo 100036479 Scc14 - - - colon tumor susceptibility 14 unknown 103629 Mm.268294 AI117581 - - - expressed sequence AI117581 unknown 110551 Fdpsl7 - - - farnesyl diphosphate synthetase-like 7 protein-coding 105242748 XR_869387 Gm38880 - - 6 E3|6 predicted gene, 38880 ncRNA 19510 Rb(2.17)4H Rb4H - - Robertsonian translocation, Chr 2 and 17, Harwell 4 other 674018 Mm.390518 Ighv1-61 Gm16900|Vh3 - 12|12 F2 immunoglobulin heavy variable 1-61 other 12355 Mm.486506 NM_009803 ENSMUSG00000005677 Nr1i3 AA209988|AI551208|CAR|CAR-beta|Care2|ESTM32|MB67 - 1 H3|1 79.21 cM nuclear receptor subfamily 1, group I, member 3 protein-coding 100042074 XM_006526420 Gm3650 - - 18 B3|18 predicted gene 3650 protein-coding 73744 Mm.30110 NM_028636 ENSMUSG00000032295 Man2c1 1110025H24Rik - 9|9 B mannosidase, alpha, class 2C, member 1 protein-coding 77200 5430403G16Rik - - - RIKEN cDNA 5430403G16 gene unknown 237222 Mm.247480 NM_177429 ENSMUSG00000040586 Ofd1 Cxorf5|DXGgc7e|ORF2 - X F5|X 77.28 cM OFD1, centriole and centriolar satellite protein protein-coding 64378 Mm.40025 NM_022427 ENSMUSG00000068696 Gpr88 AW061286|Strg - 3|3 G1 G-protein coupled receptor 88 protein-coding 71406 Mm.33063 NM_027789 ENSMUSG00000028475 Spaar 5430416O09Rik|AI481365|Spar - 4|4 B1 small regulatory polypeptide of amino acid response protein-coding 100036568 Mm.483651 XR_874095 Gm3373 100041501|Gm17143 - 14|14 A1 predicted gene 3373 unknown 76740 Mm.260647 NM_133766 ENSMUSG00000015002 Efr3a A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143 - 15|15 D1 EFR3 homolog A protein-coding 105245833 XR_874879 Gm41223 - - 14 E1|14 predicted gene, 41223 ncRNA 72242 Mm.326858 NM_027403 ENSMUSG00000070796 Psg21 1600019C01Rik|1600025N01Rik|1600026N13Rik|cea8 - 7|7 A3 pregnancy-specific glycoprotein 21 protein-coding 105246504 Gm41786 - - 18|18 predicted gene, 41786 ncRNA 69524 Mm.41751 NM_027102 ENSMUSG00000001946 Esam 2310008D05Rik|Esam1|W117m - 9|9 A4 endothelial cell-specific adhesion molecule protein-coding 75068 4930513N24Rik - - 8|8 RIKEN cDNA 4930513N24 gene protein-coding 12793 Mm.3261 NM_009919 ENSMUSG00000015759 Cnih1 0610007J15|CNIH-1|Cnih - 14|14 C1 cornichon family AMPA receptor auxiliary protein 1 protein-coding 108976 Mm.393455 4930551A22Rik AU015352 - 15|15 RIKEN cDNA 4930551A22 gene protein-coding 105244749 XR_868426 Gm40305 - - 5 C1|5 predicted gene, 40305 ncRNA 99939 Mm.446260 BB085087 - - 3 B|3 expressed sequence BB085087 unknown 100040688 Gm2907 - - 14|14 A1 ribosomal protein L3 pseudogene pseudo 108167545 Gm45910 - - 8 C5|8 predicted gene 45910 pseudo 219131 Mm.254918 NM_172603 ENSMUSG00000044703 Phf11a 4933417L10Rik|Phf11|Phf11l - 14|14 C3 PHD finger protein 11A protein-coding 72836 Mm.177073 NM_028370 ENSMUSG00000024174 Pot1b 2810458H16Rik - 17|17 C protection of telomeres 1B protein-coding 72190 Mm.131606 NM_001001881 ENSMUSG00000043391 2510009E07Rik AI194952 - 16|16 B1 RIKEN cDNA 2510009E07 gene protein-coding 13257 Del(10)12H Del12H - - deletion, Chr 10, Harwell 12 other 638411 Mm.425444 XR_001778106 ENSMUSG00000062073 Gm10109 EG638411 - 7|7 B3 predicted gene 10109 unknown 780926 Ighv1-17-1 - - 12|12 F2 immunoglobulin heavy variable V1-17-1 pseudo 226641 Mm.377046 NM_001081304 ENSMUSG00000026663 Atf6 9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49 - 1 H3|1 76.96 cM activating transcription factor 6 protein-coding 100504573 Gm15464 EG667053 - 1 C2|1 30.45 cM 40S ribosomal protein S23-like pseudo 414066 Mm.394461 NR_028266 BC037032 - - 15 A1|15 cDNA Sequence BC037032 ncRNA 100043731 Rpl27a-ps3 Gm4612 - 16 B4|16 ribosomal protein L27A, pseudogene 3 pseudo 93920 D16Jhu59 151B22.SP6 - - DNA segment, Chr 16, Johns Hopkins University 59 unknown 105247290 XR_882346 LOC105247290 - - - uncharacterized LOC105247290 ncRNA 208292 Mm.38813 NM_172458 ENSMUSG00000024298 Zfp871 4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006 - 17|17 B1 zinc finger protein 871 protein-coding 106629 Mm.440843 AI647874 - - - expressed sequence AI647874 protein-coding 100040700 Gm2915 - - 12|12 C2 GC-rich promoter binding protein 1-like 1 pseudogene pseudo 319319 Mm.461284 B230214O09Rik - - 6|6 RIKEN cDNA B230214O09 gene unknown 258281 Mm.377412 NM_146284 ENSMUSG00000049573 Olfr780 MOR114-12 - 10|10 D3 olfactory receptor 780 protein-coding 380998 Cyp2d36-ps Gm5143 - 15 E1|15 cytochrome P450, family 2, subfamily d, polypeptide 36, pseudogene pseudo 215928 Mm.31744 NM_001001489 ENSMUSG00000038528 Mfsd4b5 Naglt1c - 10|10 B1 major facilitator superfamily domain containing 4B5 protein-coding 359914 DXMgc86 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 86 unknown 105245432 Gm40888 - - 12|12 predicted gene, 40888 ncRNA 102636149 XR_388799 Gm16013 - - 11 B4|11 43.41 cM predicted gene 16013 ncRNA 791368 Mm.398965 Gm9996 - - - predicted gene 9996 unknown 100302566 LOC100302566 - - X|X F5 SUMO/sentrin specific peptidase 3 pseudogene pseudo 105245021 Gm40535 - - 9|9 predicted gene, 40535 ncRNA 671141 Pou2f3-rs1 EG666384|Gm16435|Otf11-rs1 - 1 E2.1|1 50.34 cM POU domain, class 2, transcription factor 3, related sequence 1 pseudo 100034766 Ssial2 - - - susceptibility to sialadenitis 2 unknown 74859 Mm.84041 NR_045968 ENSMUSG00000097898 4930455B14Rik 1700027C12Rik - 14|14 A1 RIKEN cDNA 4930455B14 gene ncRNA 102634405 NR_151634 Gm13133 - - 4 E2|4 84.69 cM predicted gene 13133 ncRNA 78266 Mm.389478 NM_030074 ENSMUSG00000019338 Zfp687 4931408L03Rik|Znf687|mKIAA1441 - 3|3 F2.1 zinc finger protein 687 protein-coding 108045 Clns1a-rs2 Clci-rs2|Clcni-rs2 - - chloride channel, nucleotide-sensitive, 1A, related sequence 2 protein-coding 100043322 Mm.304289 Trav12-2 - - 14 C2|14 27.44 cM T cell receptor alpha variable 12-2 other 264895 Mm.386885 NM_153807 ENSMUSG00000076435 Acsf2 - - 11|11 D acyl-CoA synthetase family member 2 protein-coding 100043083 Mm.484988 NM_001167166 ENSMUSG00000094532 Gm4216 Vmn1r162 - 7 A3|7 predicted gene 4216 protein-coding 74978 Mm.483817 NM_029134 ENSMUSG00000019892 Lrriq1 4930503E15Rik|Gm1557 - 10|10 D1 leucine-rich repeats and IQ motif containing 1 protein-coding 381352 Mm.289046 NM_001081199 ENSMUSG00000026941 Mamdc4 Gm995 - 2|2 A3 MAM domain containing 4 protein-coding 102634274 XR_378837 Gm31898 - - 8 A2|8 predicted gene, 31898 ncRNA 21401 Mm.112 NM_011542 ENSMUSG00000001604 Tcea3 S-II|SII-K1 - 4|4 D3 transcription elongation factor A (SII), 3 protein-coding 102465627 NR_106003 ENSMUSG00000098624 Mir7036 Gm27973|mmu-mir-7036|mmu-mir-7036a - 5|5 G2 microRNA 7036 ncRNA 102635610 XR_375907 Gm32900 - - 3 F2.2|3 predicted gene, 32900 ncRNA 215512 Mm.262113 NM_172543 ENSMUSG00000038893 Fam117a 5730593F17Rik|AW548096 - 11|11 D family with sequence similarity 117, member A protein-coding 668311 Mm.309 Gm9099 EG668311 - 19|19 C3 predicted gene 9099 unknown 105244497 XR_867462 Gm40094 - - 3 F2.1|3 predicted gene, 40094 ncRNA 100504464 Mm.341706 NR_036452 ENSMUSG00000051832 E230016K23Rik - - 11|11 C RIKEN cDNA E230016K23 gene ncRNA 27418 Mm.238038 NM_013791 ENSMUSG00000025609 Mkln1 A130067F06Rik|AU015903|BB154892 - 6|6 A3.3 muskelin 1, intracellular mediator containing kelch motifs protein-coding 105242387 Mm.483488 LOC105242387 - - - uncharacterized LOC105242387 ncRNA 100125402 Femwf8 - - - femur work to failure 8 unknown 107632 Zfp211 C2h2-25 - - zinc finger protein 211 protein-coding 668058 Gm12570 - - 11|11 B1.3 predicted gene 12570 pseudo 100416261 Gm18006 - - 6|6 A1 predicted gene, 18006 pseudo 51966 Mm.424504 D11Bhm181e - - 11 B5|11 46.74 cM ribosomal protein L10 pseudogene pseudo 100418043 Gm12492 - - 4|4 B1 cell division cycle 42 homolog pseudogene pseudo 21915 Mm.250332 NM_023136 ENSMUSG00000026281 Dtymk AU044245|CDC8|D10Ertd203e|TMPK|TYPK|Tmk|mtmk - 1 D|1 47.34 cM deoxythymidylate kinase protein-coding 73352 Mm.443310 1700051K13Rik - - 6|6 RIKEN cDNA 1700051K13 gene protein-coding 75567 Mm.426883 NR_040741 ENSMUSG00000098304 1700027I24Rik - - 9|9 A4 RIKEN cDNA 1700027I24 gene ncRNA 76393 Mm.86795 NR_130164 1700012H19Rik - - 11|11 E2 RIKEN cDNA 1700012H19 gene ncRNA 100042578 XM_006542137 ENSMUSG00000100045 Gm20929 - - Y|Y C1 predicted gene, 20929 protein-coding 100418057 Gm18971 - - 5|5 F general transcription factor IIH, polypeptide 3 pseudogene pseudo 108168532 XM_017318719 LOC108168532 - - Y D X-linked lymphocyte-regulated protein PM1-like protein-coding 100502628 Gm19295 - - 1|1 52.29 cM predicted gene, 19295 ncRNA 319556 Mm.386894 NR_045835 ENSMUSG00000087466 A330041J22Rik - - 9|9 E3.1 RIKEN cDNA A330041J22 gene ncRNA 55936 Mm.2065 NM_018737 ENSMUSG00000031360 Ctps2 A830031M15Rik|AI326475|Ctpsh - X|X F4 cytidine 5'-triphosphate synthase 2 protein-coding 11946 Mm.276137 NM_007505 ENSMUSG00000025428 Atp5a1 AI035633|AL022851|AL023067|Atp5f1a|Atpm|D18Ertd206e|Mom2 - 18 E3|18 52.38 cM ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 protein-coding 102636950 Gm33879 - - 14|14 predicted gene, 33879 protein-coding 100034997 Lprq4 - - - lipoprotein QTL 4 unknown 102639642 Gm15895 - - 8|8 57.73 cM predicted gene 15895 ncRNA 225876 Mm.31941 NM_001001984 ENSMUSG00000054611 Kdm2a 100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina - 19|19 A lysine (K)-specific demethylase 2A protein-coding 22264 Mm.439707 NM_009475 ENSMUSG00000025467 Prap1 Upa - 7|7 F4 proline-rich acidic protein 1 protein-coding 106529 Mm.352239 NM_027179 ENSMUSG00000031708 Tecr 2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2 - 8 C2|8 40.22 cM trans-2,3-enoyl-CoA reductase protein-coding 387175 NR_029529 ENSMUSG00000065580 Mir15b Mirn15b|mir-15b|mmu-mir-15b - 3|3 E1 microRNA 15b ncRNA 110467 Tcra-V8.5 - - - T cell receptor alpha, variable 8.5 other 229004 Mm.220423 NM_198169 ENSMUSG00000038705 Gmeb2 AI839884 - 2|2 H4 glucocorticoid modulatory element binding protein 2 protein-coding 105245435 Gm40891 - - 12|12 predicted gene, 40891 ncRNA 102634429 XR_384169 LOC102634429 - - 15 D3 uncharacterized LOC102634429 protein-coding 26379 Mm.386776 NM_007953 ENSMUSG00000024955 Esrra ERRalpha|Err1|Estrra|Nr3b1 - 19 A|19 5.08 cM estrogen related receptor, alpha protein-coding 111692 Iapt4 - - - intracisternal A particle, tumor specific 4 other 66784 Mm.483216 NM_025766 ENSMUSG00000075510 Fam187a 4933439F11Rik - 11|11 E1 family with sequence similarity 187, member A protein-coding 100125929 Mm.392411 NR_152207 0610009E02Rik - - 2 A3|2 RIKEN cDNA 0610009E02 gene ncRNA 236732 Mm.279194 NM_145627 ENSMUSG00000031060 Rbm10 E430039K10Rik - X|X A1.3 RNA binding motif protein 10 protein-coding 102634021 XR_390842 Gm13001 - - 4 D3|4 69.36 cM predicted gene 13001 ncRNA 108167342 XR_865551 LOC108167342 - - 1 C5 uncharacterized LOC108167342 ncRNA 100503724 XM_003084719 Dnajc19-ps Gm15118 - 7 E3|7 54.85 cM DnaJ heat shock protein family (Hsp40) member C19, pseudogene protein-coding 100035928 Sdtq4 E5 - - skull development traits QTL 4 unknown 21182 T(4;5)46H T46H - - reciprocal translocation, Chr 4 and 5, Harwell 46 other 105244910 Gm40433 - - 12|12 predicted gene, 40433 ncRNA 76669 Mm.491041 NM_029697 ENSMUSG00000031998 1700128F08Rik - - 9|9 A1 U1-snRNP binding protein homolog pseudogene pseudo 102631817 XR_388627 Gm30058 - - 11 B1.3|11 predicted gene, 30058 ncRNA 62153 D14Mit15 - - 14 20.65 cM DNA segment, Chr 14, Massachusetts Institute of Technology 15 unknown 433956 Mm.5547 NM_001081265 ENSMUSG00000025857 Dnaaf5 BC053401|C76907|Heatr2 - 5|5 G2 dynein, axonemal assembly factor 5 protein-coding 100862282 Gm21616 - - X|X predicted gene, 21616 protein-coding 105246602 XR_877940 Gm41871 - - 19 D2|19 predicted gene, 41871 ncRNA 382693 Mm.313447 LOC382693 - - 12|12 F2 immunoglobulin heavy chain-like other 20810 Mm.10 NM_009272 ENSMUSG00000006442 Srm AA407669|SpdST|SpdSy - 4|4 E2 spermidine synthase protein-coding 102634084 Mm.60886 XR_389767 ENSMUSG00000104718 Gm31752 Gm43030 - 5 A3|5 predicted gene, 31752 ncRNA 14033 exed - - - extraembryonic ectoderm development unknown 100416995 Gm18353 - - 7|7 B4 MAS-related GPR, member B3 pseudogene pseudo 62735 D18Mit184 - - 18 39.7 cM DNA segment, Chr 18, Massachusetts Institute of Technology 184 unknown 791382 Mm.483732 Gm9753 - - - predicted gene 9753 unknown 692165 Mm.423815 Igkv10-96 Gm16637 - 6|6 C1 immunoglobulin kappa variable 10-96 other 71345 Mm.235813 NM_178381 ENSMUSG00000054662 Ano9 5430425C04Rik|Tmem16j|Tp53i5|Trp53i5 - 7|7 F5 anoctamin 9 protein-coding 677682 Itpa-ps3 - - X A4|X inosine triphosphatase (nucleoside triphosphate pyrophosphatase) pseudogene 3 pseudo 100126454 Trav5n-2 - - 14|14 C2 T cell receptor alpha variable 5N-2 pseudo 66844 Mm.235562 NM_024180 ENSMUSG00000025353 Ormdl2 0610012C09Rik - 10|10 D3 ORM1-like 2 (S. cerevisiae) protein-coding 12718 ckrtgr - - - ckr transgene region unknown 102638079 Gm34728 - - 5|5 predicted gene, 34728 protein-coding 102635430 LOC102635430 - - 2 E1 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 pseudogene pseudo 632955 Gm7097 - - 10 B5.3|10 predicted gene 7097 protein-coding 109279925 LOC109279925 Mm190 - - VISTA enhancer mm190 biological-region 77980 Mm.35483 NM_030019 ENSMUSG00000036529 Sbf1 2610510A08Rik|B230113C15Rik|Mtmr5|mKIAA3020 - 15|15 E3 SET binding factor 1 protein-coding 329217 Mm.108566 NR_131964 Panct2 9530060I07|EG329217|Gm5101 - 1|1 D pluripotency-associated noncoding transcript 2 ncRNA 100124556 Vmn2r-ps58 - - 7|7 B3 vomeronasal 2, receptor, pseudogene 58 pseudo 27490 Mm.441418 D0Kist5 CAG-9 - - DNA segment, KIST 5 unknown 100316678 NR_035432 ENSMUSG00000084516 Mir1902 Mirn1902|mmu-mir-1902 - 2 E2|2 54.74 cM microRNA 1902 ncRNA 21362 Targ3 TA-4 - - transforming growth factor alpha regulated gene 3 protein-coding 108167872 LOC108167872 - - 11 E2 40S ribosomal protein S28 pseudogene pseudo 85038 D2Mit9 - - 2 38.54 cM DNA segment, Chr 2, Massachusetts Institute of Technology 9 unknown 72061 Mm.188105 NM_028079 ENSMUSG00000021458 2010111I01Rik 2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b - 13|13 B3 RIKEN cDNA 2010111I01 gene protein-coding 320210 Mm.126237 NR_040329 ENSMUSG00000100600 A230077H06Rik - - 7|7 B3 RIKEN cDNA A230077H06 gene ncRNA 73371 Mm.393323 1700052K07Rik - - 5|5 RIKEN cDNA 1700052K07 gene protein-coding 329178 Mm.44798 NM_175510 ENSMUSG00000055567 Unc80 C030018G13Rik|C230061B10Rik|UNC-80 - 1|1 C3 unc-80, NALCN activator protein-coding 100504014 Mm.490239 NM_001177471 ENSMUSG00000082976 Gm15056 Defb52 - 8|8 A2 predicted gene 15056 protein-coding 74080 Mm.294082 NM_144533 ENSMUSG00000032456 Nmnat3 4933408N02Rik|PNAT3 - 9|9 E3.3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 52942 A.seq - - - DNA segment, A unknown 54399 Mm.155696 NM_018742 ENSMUSG00000025484 Bet1l 2610021K23Rik|Gs15 - 7|7 F4 Bet1 golgi vesicular membrane trafficking protein like protein-coding 20112 Mm.268383 NM_011299 ENSMUSG00000023809 Rps6ka2 90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk - 17 A1|17 4.7 cM ribosomal protein S6 kinase, polypeptide 2 protein-coding 27713 D1Dau30 - - - DNA segment, Chr 1, DA Underhill 30 unknown 102637191 Mm.417076 NR_151520 ENSMUSG00000103305 Gm34068 - - 1 H5|1 predicted gene, 34068 ncRNA 402763 Mm.461820 A630073K07Rik - - 2|2 RIKEN cDNA A630073K07 gene protein-coding 100048972 Wtmq7 mQTL12b - - weight module QTL 7 unknown 102633845 XR_381875 Gm31573 - - 12 E|12 predicted gene, 31573 ncRNA 102467292 n-TQctg5 n-Tq5 - 3 F2.1|3 nuclear encoded tRNA glutamine 5 (anticodon CTG) tRNA 621407 Mm.292040 XM_017321255 Gm9970 - - 5 B1|5 predicted gene 9970 protein-coding 667404 Mm.484973 NM_001166747 ENSMUSG00000095064 Vmn1r135 EG667404|Gm8611 - 7|7 A3 vomeronasal 1 receptor 135 protein-coding 105244176 Gm39829 - - 11|11 predicted gene, 39829 ncRNA 668076 Gm8964 EG668076 - 1|1 G2 ribosomal protein L7A pseudogene pseudo 102632321 Gm15883 - - 7|7 15.83 cM predicted gene 15883 ncRNA 102636875 Gm33825 - - 14|14 predicted gene, 33825 protein-coding 106313 AU015734 - - - expressed sequence AU015734 unknown 73784 Mm.66947 NR_045186 ENSMUSG00000115474 4930430F21Rik - - 15|15 B2 RIKEN cDNA 4930430F21 gene ncRNA 11997 Mm.482073 NM_009731 ENSMUSG00000052131 Akr1b7 AR|Avdp|MVDP - 6 B1|6 14.95 cM aldo-keto reductase family 1, member B7 protein-coding 67638 Mm.390832 NM_026288 ENSMUSG00000047938 4930483J18Rik - - 15|15 E1 RIKEN cDNA 4930483J18 gene ncRNA 97757 C87286 - - - expressed sequence C87286 unknown 381524 Mm.23351 NM_001033454 ENSMUSG00000086712 AI427809 Gm1659 - 4|4 B2 expressed sequence AI427809 ncRNA 74245 Mm.45396 NM_028836 ENSMUSG00000028189 Ctbs 2210401K11Rik|CTB - 3|3 H2 chitobiase, di-N-acetyl- protein-coding 73577 1700102F20Rik - - 6|6 RIKEN cDNA 1700102F20 gene protein-coding 108168595 XM_017318801 LOC108168595 - - Y C3 X-linked lymphocyte-regulated protein PM1-like protein-coding 67935 Mm.65457 NM_001003951 ENSMUSG00000058019 Ces5a 1700081L16Rik|1700122C07Rik|BB081581|Ces7|Gm503|cauxin - 8|8 C5 carboxylesterase 5A protein-coding 53132 B19E(I) - - - DNA segment, B19E(I) unknown 69318 Mm.233840 NM_027037 ENSMUSG00000030858 Fam24b 1700007K09Rik - 7|7 F3 family with sequence similarity 24 member B protein-coding 668044 Gm8945 EG668044 - 6 A3.1|6 PRP18 pre-mRNA processing factor 18 homolog pseudogene pseudo 100504559 Gm20287 - - 7|7 A1 vomeronasal 2, receptor 37 pseudogene pseudo 101835 Mm.370336 NM_001033530 ENSMUSG00000074166 AW146154 AI451288 - 7|7 B3 expressed sequence AW146154 protein-coding 259014 Mm.377789 NM_147012 ENSMUSG00000075196 Olfr1047 MOR188-3 - 2|2 D olfactory receptor 1047 protein-coding 100035880 Lith17 - - 5 63.84 cM lithogenic gene 17 unknown 62088 D10Mit94 - - 10 43.7 cM DNA segment, Chr 10, Massachusetts Institute of Technology 94 unknown 78887 Mm.394071 NM_030207 ENSMUSG00000023764 Sfi1 - - 11|11 A1 Sfi1 homolog, spindle assembly associated (yeast) protein-coding 114307 Lprm1 - - 4 34.92 cM lymphoproliferation modifier 1 unknown 100316816 NR_035477 ENSMUSG00000088983 Mir1952 mmu-mir-1952 - 2 F3|2 68.52 cM microRNA 1952 ncRNA 100534315 LOC100534315 - - 10|10 C1 transcriptional adaptor 2B pseudogene pseudo 109279899 LOC109279899 Mm81 - - VISTA enhancer mm81 biological-region 108168214 Gm46497 - - 15 A1|15 predicted gene, 46497 pseudo 503845 Mm.484825 NM_001012766 Ear12 - - - eosinophil-associated, ribonuclease A family, member 12 protein-coding 100040271 Mm.421228 Gm15482 - - X|X A5 predicted gene 15482 unknown 109798 Ea9 Ea-430|Ea-9 - - erythrocyte antigen 9 protein-coding 668811 Gm9373 EG668811 - 7|7 B5 high mobility group box 2 pseudogene pseudo 102632994 Mm.29824 XR_880190 Gm11592 - - 11 D|11 60.95 cM predicted gene 11592 ncRNA 98299 Mm.442595 AI314140 - - - expressed sequence AI314140 unknown 66528 Mm.275740 NM_183259 ENSMUSG00000048442 Smim5 2210020M01Rik - 11|11 E2 small integral membrane protein 5 protein-coding 105243682 XR_882305 Gm39513 - - X A5|X predicted gene, 39513 ncRNA 14087 Mm.6536 NM_016925 ENSMUSG00000032815 Fanca AW208693|FACA - 8 E1|8 72.1 cM Fanconi anemia, complementation group A protein-coding 116618 D7Tem22 - - - DNA segment, Chr 7, Tempel 22 unknown 319620 C130045I22Rik - - 14|14 RIKEN cDNA C130045I22 gene protein-coding 100035869 Sle17 - - - systematic lupus erythematosus susceptibility 17 unknown 100417000 Obox3-ps7 Gm18355 - 7|7 A1 oocyte specific homeobox 3, pseudogene 7 pseudo 215210 Mm.11688 NM_172541 ENSMUSG00000039886 Tmem120a 2010310D06Rik|Tmpit - 5|5 G2 transmembrane protein 120A protein-coding 23836 Mm.103640 NM_011800 ENSMUSG00000050840 Cdh20 Cdh7 - 1 E2.1|1 49.42 cM cadherin 20 protein-coding 105247237 XR_881802 Gm42369 - - 7 A1|7 predicted gene, 42369 ncRNA 102467466 n-TRccg1 n-Tr7 - 11 E1|11 nuclear encoded tRNA arginine 1 (anticodon CCG) tRNA 109767 Tcp4 Tcp-4 - - t-complex protein 4 protein-coding 102636375 XR_379990 Gm33460 Gm45761 - 9 F3|9 predicted gene, 33460 ncRNA 60997 D2Mit215 - - 2 3.8 cM DNA segment, Chr 2, Massachusetts Institute of Technology 215 unknown 238049 Gm4927 - - 12|12 A1.1 vaccinia related kinase 3 pseudogene pseudo 116854 Rhs1 - - - resistance to herpes simplex virus 1 unknown 76820 Mm.440802 NM_029758 ENSMUSG00000020589 Fam49a 2410157M17Rik|9630047E15|D12Ertd553e - 12 A1.1|12 5.63 cM family with sequence similarity 49, member A protein-coding 102638004 XR_880129 Gm34677 - - 11 C|11 predicted gene, 34677 ncRNA 252904 Mm.222635 NM_145842 ENSMUSG00000091662 Vmn1r69 V1re9 - 7|7 A1 vomeronasal 1 receptor 69 protein-coding 100379611 Mm.488476 Gm11767 - - - predicted gene 11767 protein-coding 113875 4931413I07Rik - - 17|17 RIKEN cDNA 4931413I07 gene protein-coding 108167838 XR_001779877 Gm46246 - - 1 G3|1 predicted gene, 46246 ncRNA 226414 Mm.28693 NM_145507 ENSMUSG00000026356 Dars 5730439G15Rik - 1|1 E3 aspartyl-tRNA synthetase protein-coding 100043724 Gm4609 EG626807|Gm6707 - 3 G1|3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 319917 A630036G19Rik - - 16|16 RIKEN cDNA A630036G19 gene protein-coding 613123 Ugt1a8 A116 - 1|1 UDP glucuronosyltransferase 1 family, polypeptide A8 protein-coding 102641363 XR_876627 Gm38551 - - 17 A2|17 predicted gene, 38551 ncRNA 353321 D13Jde1 - - - DNA segment, Chr 13, Jan Deussing 1 unknown 19540 Rb(4.12)1Nam Rb1Nam - - Robertsonian translocation, Chr 4 and 12, Namur 1 other 237504 Mm.282672 NM_146240 ENSMUSG00000044921 Rassf9 AW322107|Pamci - 10|10 D1 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 protein-coding 110124 Tsu - - - T-suppressor cell alloantigen protein-coding 102632790 Gm30772 - - 12|12 predicted gene, 30772 ncRNA 62732 D18Mit189 - - - DNA segment, Chr 18, Massachusetts Institute of Technology 189 unknown 51920 D2Ertd616e - - 2 60.37 cM DNA segment, Chr 2, ERATO Doi 616, expressed unknown 117577 DXMgc47 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 47 unknown 17105 Mm.45436 NM_017372 ENSMUSG00000069516 Lyz2 AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp - 10 D2|10 65.34 cM lysozyme 2 protein-coding 19218 Mm.30424 NM_011196 ENSMUSG00000040016 Ptger3 EP3|Pgerep3|Ptgerep3 - 3 H4|3 81.32 cM prostaglandin E receptor 3 (subtype EP3) protein-coding 723916 NR_030252 ENSMUSG00000070074 Mir484 Mirn484|mir-484|mmu-mir-484 - 16|16 A1 microRNA 484 ncRNA 112132 Aaiq2 - - 4 61.67 cM aromatase activity QTL 2 unknown 791328 Mm.406518 D630011A20Rik - - - RIKEN cDNA D630011A20 gene unknown 639044 Gm7259 EG639044 - 13 A5|13 predicted gene 7259 pseudo 105245149 XR_871634 Gm40642 - - 10 B3|10 predicted gene, 40642 ncRNA 100041809 Gm3521 - - 5 C3.1|5 predicted gene 3521 ncRNA 60712 D6Mit86 - - 6 1.81 cM DNA segment, Chr 6, Massachusetts Institute of Technology 86 unknown 80720 Mm.210823 NM_001024954 ENSMUSG00000031860 Pbx4 2410015M21Rik|AI429113|AW045266 - 8|8 B3.3 pre B cell leukemia homeobox 4 protein-coding 110637 Mm.370291 NM_175481 ENSMUSG00000032017 Grik4 6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1 - 9 A5.1|9 23.8 cM glutamate receptor, ionotropic, kainate 4 protein-coding 100035113 Baa1 - - 9 26.83 cM BALB/c autoimmunity 1 unknown 100416364 Gm18072 - - 14|14 B predicted gene, 18072 pseudo 70897 Mm.56514 NM_027597 ENSMUSG00000056987 Fam71d 4921509E07Rik|4930516C23Rik|GARI-L2 - 12|12 C3 family with sequence similarity 71, member D protein-coding 67749 Mm.273339 NM_026358 ENSMUSG00000037161 Mgarp 4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap - 3|3 C mitochondria localized glutamic acid rich protein protein-coding 68236 Mm.33648 NM_026630 ENSMUSG00000070708 Gtsf1l 2410116G06Rik - 2|2 H2 gametocyte specific factor 1-like protein-coding 492885 Cd4ts4 - - 9 35.6 cM CD4 T cell subset 4 unknown 105246310 Gm41612 - - 17|17 predicted gene, 41612 ncRNA 215051 Mm.32648 NM_146000 ENSMUSG00000032077 Bud13 AV305342|D030060M11Rik - 9|9 A5.2 BUD13 homolog protein-coding 665454 Gm11271 - - 13|13 A3.1 predicted gene 11271 pseudo 216454 Mm.214923 NM_145424 ENSMUSG00000074639 Rdh16f2 CRAD-L - 10|10 D3 RDH16 family member 2 protein-coding 105244984 XR_870468 Gm40501 - - 8 B3.1|8 predicted gene, 40501 ncRNA 257912 Mm.377297 NM_001011756 ENSMUSG00000057349 Olfr948 MOR171-45|MOR171-51 - 9|9 A5.1 olfactory receptor 948 protein-coding 192895 Gm12180 Cct7-4p - 11 B1.2|11 chaperonin subunit 7 (eta) pseudogene pseudo 214384 Mm.32257 NM_145136 ENSMUSG00000020542 Myocd BSAC2A|Srfcp - 11|11 B3 myocardin protein-coding 102633930 XR_001780209 LOC102633930 - - 11 B1.3 uncharacterized LOC102633930 ncRNA 100312487 Vmn1r-ps16 - - 6 B3|6 vomeronasal 1 receptor, pseudogene 16 pseudo 108105 Mm.33935 NM_054052 ENSMUSG00000022686 B3gnt5 beta3GnT5 - 16|16 A3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 269951 Mm.246432 NM_173011 ENSMUSG00000030541 Idh2 E430004F23|IDPm|Idh-2 - 7 D2|7 45.43 cM isocitrate dehydrogenase 2 (NADP+), mitochondrial protein-coding 102466628 NR_105757 ENSMUSG00000098347 Mir6339 Gm27848|mmu-mir-6339 - 2|2 F1 microRNA 6339 ncRNA 105244742 XR_868408 Gm40298 - - 5 B3|5 predicted gene, 40298 ncRNA 105244019 LOC105244019 - - 1 H4 coiled-coil domain-containing protein 121-like pseudo 96956 C77267 - - - expressed sequence C77267 unknown 26427 Mm.10353 NM_011957 ENSMUSG00000027230 Creb3l1 Oasis - 2|2 E1 cAMP responsive element binding protein 3-like 1 protein-coding 209513 Mm.300612 NM_001008499 ENSMUSG00000069707 Taar4 Gm226|Ta2|taR-4 - 10|10 A4 trace amine-associated receptor 4 protein-coding 108167864 Gm12210 - - 11 B1.3|11 31.86 cM 40S ribosomal protein S28 pseudogene pseudo 105245822 XR_874826 Gm41212 - - 14 D3|14 predicted gene, 41212 ncRNA 16498 Mm.388924 NM_010598 ENSMUSG00000028931 Kcnab2 F5|I2rf5|Kcnb3|kv-beta-2 - 4 E2|4 83.08 cM potassium voltage-gated channel, shaker-related subfamily, beta member 2 protein-coding 100502679 Mm.446399 Gm15577 - - 3|3 80.84 cM predicted gene 15577 unknown 102640348 XR_389526 Gm36434 - - 5 F|5 predicted gene, 36434 ncRNA 217874 Mm.134213 NM_001127685 ENSMUSG00000091402 Rd3l A930011N13 - 12|12 F1 retinal degeneration 3-like protein-coding 51839 D2Ggc4e - - - DNA segment, Chr 2, G. Consalez 4, expressed unknown 102638152 XR_376449 Gm34784 - - 4 C6|4 predicted gene, 34784 ncRNA 11835 Mm.39005 NM_013476 ENSMUSG00000046532 Ar AW320017|Tfm - X C3|X 42.82 cM androgen receptor protein-coding 667530 Mm.484970 NM_001166753 ENSMUSG00000094905 Vmn1r155 EG667530|Gm8687 - 7|7 A3 vomeronasal 1 receptor 155 protein-coding 545192 Mm.328859 NM_001163270 ENSMUSG00000047507 Baiap3 Bap3|Gm937 - 17|17 A3.3 BAI1-associated protein 3 protein-coding 14885 Mm.10182 NM_010364 ENSMUSG00000001524 Gtf2h4 AW545633|BTF2 p52|p52 - 17|17 B1 general transcription factor II H, polypeptide 4 protein-coding 100040350 Gm2726 - - 13|13 D2.1 family with sequence similarity 60, member A pseudogene pseudo 100038411 Mm.438704 Gm15998 - - - predicted gene 15998 unknown 100034984 Vgot2 - - - vaginal opening timing 2 unknown 72088 Mm.119709 NM_023649 ENSMUSG00000030838 Ush1c 2010016F01Rik|harmonin - 7 B3|7 29.66 cM USH1 protein network component harmonin protein-coding 66932 Mm.1116 NM_025852 ENSMUSG00000047417 Rexo1 1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1 - 10|10 C1 REX1, RNA exonuclease 1 protein-coding 633522 Gm7115 EG633522 - 3|3 E3 ring finger protein 175 pseudogene pseudo 215714 Mm.472859 NM_175447 Gm4793 EG215714 - 1 E4|1 predicted gene 4793 ncRNA 492947 Alcdp1 - - 1 80.33 cM alcohol dependency 1 unknown 100126790 Wg2d - - - weight gain in high growth mice 2d unknown 100040394 Gm15267 - - X|X F3 predicted gene 15267 pseudo 105243066 XR_869985 Gm39097 - - 7 F3|7 predicted gene, 39097 ncRNA 101056081 Gm29774 - - 10 B5.1|10 predicted gene, 29774 pseudo 20901 Mm.22584 NM_011499 ENSMUSG00000030224 Strap AW557906|C78091|C79202|Unrip - 6|6 G1 serine/threonine kinase receptor associated protein protein-coding 73593 Mm.398309 XR_387693 1700112N08Rik - - 5|5 F RIKEN cDNA 1700112N08 gene ncRNA 15157 Hc8 Cen8 - - heterochromatin, Chr 8 other 108167708 XR_001779350 Gm46145 - - 1 E2.3|1 predicted gene, 46145 ncRNA 19462 Rb(10.12)5Lub Rb5Lub - - Robertsonian translocation, Chr 10 and 12, Lubeck 5 other 320349 6430543K15Rik - - 2|2 RIKEN cDNA 6430543K15 gene protein-coding 102633839 XR_381400 Gm31569 - - 12 A2|12 predicted gene, 31569 ncRNA 21084 T(14;18)12Ad T12Ad - - reciprocal translocation, Chr 14 and 18, Adler 12 other 105243339 Gm39288 - - 8 C1|8 predicted gene, 39288 pseudo 20710 Mm.379809 NM_011456 ENSMUSG00000062342 Serpinb9e AW540195|NK26|Spi14|ovalbumin - 13 A3.3|13 13.84 cM serine (or cysteine) peptidase inhibitor, clade B, member 9e protein-coding 12005 Mm.23684 NM_009733 ENSMUSG00000024182 Axin1 AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly - 17 A3.3|17 13.07 cM axin 1 protein-coding 665646 NR_002884 Gm7729 EG665646 - 18|18 A2 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 110940 Tmevd1 Tmevd-1 - 6 48.93 cM Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 1 unknown 100035373 Hemq4 - - 11 9.92 cM hematocrit QTL 4 unknown 56214 Mm.273170 NM_019575 ENSMUSG00000113949 Scamp4 2410022D05Rik|AI448940|AU022392|AW742369|Sc4 - 10|10 C1 secretory carrier membrane protein 4 protein-coding 208924 Mm.483611 A730045E13Rik Gm584 - 8|8 A2 RIKEN cDNA A730045E13 gene unknown 102467529 n-TGccc7 n-Tg7 - 17 A3.3|17 nuclear encoded tRNA glycine 7 (anticodon CCC) tRNA 382639 Mm.11350 NM_001100460 ENSMUSG00000037638 Zbtb42 EG382639|Gm5188|simiRP58 - 12|12 F1 zinc finger and BTB domain containing 42 protein-coding 100417269 Gm18494 - - 2|2 C3 fucosidase, alpha-L- 1, tissue pseudogene pseudo 71523 Mm.72795 NM_027820 ENSMUSG00000034587 8430429K09Rik - - 11|11 A1 RIKEN cDNA 8430429K09 gene ncRNA 108168154 Mm.491710 NM_028535 Gm9732 100041143|73415|Gm3161 - 14|14 C1 predicted gene 9732 ncRNA 104816 Mm.77133 NM_001081169 ENSMUSG00000037686 Aspg A530050D06Rik|AI429460|Gm690 - 12|12 F1 asparaginase protein-coding 14616 Mm.258183 NM_008123 ENSMUSG00000049908 Gja8 Aey5|Cnx50|Cx50|Lop10 - 3 F2.1|3 42.03 cM gap junction protein, alpha 8 protein-coding 109770 Tcp7 Tcp-7 - - t-complex protein 7 protein-coding 22596 Mm.246952 NM_009533 ENSMUSG00000026187 Xrcc5 AI314015|CTC85|CTCBF|Ku80|Ku86 - 1 C3|1 36.5 cM X-ray repair complementing defective repair in Chinese hamster cells 5 protein-coding 432950 Gm5471 EG432950 - 15|15 B3.3 predicted pseudogene 5471 pseudo 111441 Emv53 Emv-53 - - endogenous ecotropic MuLV 53 other 234700 Mm.133990 NM_175024 ENSMUSG00000044287 Nrn1l Cpg15-2|G630049C14Rik - 8|8 D3 neuritin 1-like protein-coding 21252 T(7;13)43Ad T43Ad - - reciprocal translocation, Chr 7 and 13, Adler 43 other 62473 D19Mit123 - - 19 45.06 cM DNA Segment, Chr 19 Massachusetts Institute of Technology 123 unknown 21767 Mm.22266 NM_011573 ENSMUSG00000040813 Tex264 TEG-264 - 9|9 F1 testis expressed gene 264 protein-coding 18004 Mm.486881 NM_175089 ENSMUSG00000031644 Nek1 D8Ertd790e|kat - 8 B3.1|8 30.91 cM NIMA (never in mitosis gene a)-related expressed kinase 1 protein-coding 320507 Mm.448214 NR_040621 ENSMUSG00000084781 D930015M05Rik - - 2|2 E1 RIKEN cDNA D930015M05 gene ncRNA 626123 Mm.381823 9130004C02Rik - - 9|9 A4 RIKEN cDNA 9130004C02 gene protein-coding 20540 Mm.142455 NM_011405 ENSMUSG00000000958 Slc7a7 AI790233|my+lat1 - 14|14 C2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 7 protein-coding 544896 Mm.438671 Ighv5-9 Gm16949|VH7183 - 12|12 F1 immunoglobulin heavy variable 5-9 other 19009 Mm.28825 NM_010127 ENSMUSG00000009739 Pou6f1 2310038G18Rik|C79593|Emb|cns-1 - 15 F1|15 56.35 cM POU domain, class 6, transcription factor 1 protein-coding 230751 Mm.38907 NM_172701 ENSMUSG00000042616 Oscp1 1810007P19Rik|5730415O04|6030436A01Rik - 4|4 D2.2 organic solute carrier partner 1 protein-coding 53054 F15SP6 - - - DNA segment, F15SP6 unknown 26900 Mm.302938 NM_012008 ENSMUSG00000069045 Ddx3y 8030469F12Rik|D1Pas1-rs1|Dby - Y|Y A1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked protein-coding 384605 XM_001480144 Wdr88 Gm1429|Pqwd - 7|7 B2 WD repeat domain 88 protein-coding 668845 Gm9397 EG668845 - 3 G3|3 makorin, ring finger protein, 1 pseudogene pseudo 100043058 Mm.484986 NM_001167160 ENSMUSG00000096871 Gm10665 Vmn1r150 - 7|7 A3 predicted gene 10665 protein-coding 14134 Mm.182935 NM_010190 ENSMUSG00000026835 Fcnb Fcn2 - 2|2 A3 ficolin B protein-coding 432754 Mm.118154 XR_382289 Gm29676 - - 13|13 A4 predicted gene, 29676 ncRNA 58187 Mm.390755 NM_021386 ENSMUSG00000022132 Cldn10 6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e - 14 E4|14 62.55 cM claudin 10 protein-coding 67043 Mm.44207 NM_025932 ENSMUSG00000031357 Syap1 2010110O17Rik|AW011796|BSTA - X|X F4 synapse associated protein 1 protein-coding 112136084 Gm45716 SMIM36 - - predicted gene 45716 protein-coding 67809 Mm.475909 NM_001033136 ENSMUSG00000070730 Rmdn3 1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3 - 2|2 E5 regulator of microtubule dynamics 3 protein-coding 666282 Gm13024 - - 4|4 E1 high mobility group box 2 pseudogene pseudo 100502713 Gm13541 - - 2|2 30.12 cM NEDD8-like pseudo 116824 Disso2 Disso-2 - 15 34.29 cM dissociation of activity 2 unknown 100038594 Gm10370 - - - predicted gene 10370 protein-coding 74737 Mm.288645 NM_029078 ENSMUSG00000041328 Pcf11 2500001H09Rik|5730417B17Rik|C77803 - 7|7 E1 PCF11 cleavage and polyadenylation factor subunit protein-coding 212448 Mm.132789 NM_001162537 ENSMUSG00000004360 9330159F19Rik - - 10|10 A4 RIKEN cDNA 9330159F19 gene protein-coding 100042957 Gm4128 - - 5 A1|5 predicted gene 4128 protein-coding 108701 1110037P09Rik - - 2|2 RIKEN cDNA 1110037P09 gene protein-coding 105242658 Mm.372521 NR_131181 ENSMUSG00000087658 Hotairm1 Gm15051|Hoxaas1 - 6 25.4 cM|6 B3 Hoxa transcript antisense RNA, myeloid-specific 1 ncRNA 105246871 Gm42077 - - 11|11 predicted gene, 42077 protein-coding 19731 Mm.245270 NM_016846 ENSMUSG00000026482 Rgl1 Rgl|mKIAA0959 - 1|1 G2-G3 ral guanine nucleotide dissociation stimulator,-like 1 protein-coding 18769 Mm.10091 NM_011106 ENSMUSG00000035268 Pkig PKIgamma - 2 H3|2 84.4 cM protein kinase inhibitor, gamma protein-coding 61363 D4Mit186 - - 4 42.36 cM DNA segment, Chr 4, Massachusetts Institute of Technology 186 unknown 112194 Scc5 - - 18 25.47 cM colon tumor susceptibility 5 unknown 110120456 LOC110120456 - - - VISTA enhancer mm1297 biological-region 105246629 XR_878088 Gm41894 - - X A2|X predicted gene, 41894 ncRNA 319496 6030432P03Rik - - 2|2 RIKEN cDNA 6030432P03 gene protein-coding 102637642 XR_375175 Gm34402 - - 2 H1|2 predicted gene, 34402 ncRNA 102634740 Gm32251 - - 16|16 predicted gene, 32251 ncRNA 12571 Mm.31672 NM_009873 ENSMUSG00000040274 Cdk6 AI504062|Crk2 - 5 A1|5 2.04 cM cyclin-dependent kinase 6 protein-coding 383783 Gm1335 - - 2|2 E1 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 pseudogene pseudo 668750 Gm9333 EG668750 - 7|7 F3 methionine aminopeptidase 2 pseudogene pseudo 103219 AI449547 - - - expressed sequence AI449547 protein-coding 633692 Gm7122 EG633692 - 14|14 C2 ATPase, H+ transporting, lysosomal accessory protein 2 pseudogene pseudo 100861705 Gm21152 - - 7 B3|7 zinc finger, MYND-type containing 8 pseudogene pseudo 667812 Gm8828 EG667812 - 6|6 C1 ornithine decarboxylase, structural 1 pseudogene pseudo 102633889 XR_383443 Gm31607 - - 14 C3|14 predicted gene, 31607 ncRNA 108167565 Gm17149 - - 8 A1.3|8 10.3 cM AP-3 complex subunit sigma-1 pseudogene pseudo 105244375 XR_879918 Zfp286os Gm12283 - 11 B2|11 38.68 cM zinc finger protein 286, opposite strand ncRNA 245670 Mm.190922 NM_001004154 ENSMUSG00000041658 Rragb - - X|X F3 Ras-related GTP binding B protein-coding 108168204 XR_001781477 Gm46488 - - 14 E5|14 predicted gene, 46488 ncRNA 667802 Gm8824 EG667802 - 16 B5|16 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100038627 Mm.387089 NR_033540 ENSMUSG00000114442 F630042J09Rik - - 13 B3|13 RIKEN cDNA F630042J09 gene ncRNA 100316846 Mm.415909 Gm10367 - - 11 C|11 54.34 cM predicted gene 10367 unknown 111066 Odc-rs2 BRS-2|Odc-2 - - ornithine decarboxylase, related sequence 2 pseudo 67313 Mm.36763 NM_028872 ENSMUSG00000041605 5730559C18Rik 1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54|Inava - 1 E4|1 RIKEN cDNA 5730559C18 gene protein-coding 69912 Mm.299887 NM_145706 ENSMUSG00000040034 Nup43 2610016K01Rik|2610529I12Rik|AA409950|p42 - 10|10 A1 nucleoporin 43 protein-coding 60701 D1Mit66 - - 1 4.12 cM DNA segment, Chr 1, Massachusetts Institute of Technology 66 unknown 100035357 Pregq4 - - 17 29.73 cM pregnancy QTL 4 unknown 109279871 LOC109279871 Mm72 - - VISTA enhancer mm72 biological-region 544973 Gm10257 EG544973|H3mm13 - 13|13 D1 H3 histone, family 3A pseudogene pseudo 74981 Mm.401966 4930480I08Rik - - 3|3 RIKEN cDNA 4930480I08 gene protein-coding 100035465 Bw28 Bw22 - - body weight QTL 28 unknown 102640117 Mm.183845 NR_153331 ENSMUSG00000086034 Gm15201 - - X F4|X 74.95 cM predicted gene 15201 ncRNA 100124341 Traj47 - - 14|14 C2 T cell receptor alpha joining 47 other 100038705 Gm10498 - - - predicted gene 10498 protein-coding 100416208 Gm17967 - - 1|1 H4 ribosomal protein L7 pseudogene pseudo 105246758 XR_878682 Gm42000 - - 3 A1|3 predicted gene, 42000 ncRNA 100862067 XM_003688961 ENSMUSG00000094391 Btbd35f29 Gm21447 - X A3.1|X BTB domain containing 35, family member 29 protein-coding 68763 Mm.28895 NR_015536 ENSMUSG00000092203 1110038B12Rik 0610009C20Rik|0910001G04Rik - 17|17 B1 RIKEN cDNA 1110038B12 gene ncRNA 666005 Gm7887 EG666005 - 6|6 B2.3 PEST proteolytic signal containing nuclear protein pseudogene pseudo 71832 Mm.483162 NM_027945 ENSMUSG00000046934 Csl 1700007H16Rik - 10|10 D1 citrate synthase like protein-coding 383940 LOC383940 - - 4|4 E1 zinc finger protein 501-like pseudo 16624 Mm.435488 NM_008457 ENSMUSG00000063089 Klk1b8 Klk8|Nrpn|TADG14|kallikrein|mGK-8 - 7 B3|7 28.43 cM kallikrein 1-related peptidase b8 protein-coding 105243832 Gm39577 - - 11|11 predicted gene, 39577 protein-coding 102632353 XM_006511600 Gm30447 - - 9 C|9 predicted gene, 30447 protein-coding 360081 D17Jcs16 - - - DNA segment, Chr 17, John C. Schimenti 16 unknown 108168140 Gm46442 - - 14 A2|14 60S ribosomal protein L23a pseudogene pseudo 665205 Mm.440737 NR_038101 Gm14327 - - 2|2 H4 predicted gene 14327 pseudo 69718 Mm.245867 NM_027184 ENSMUSG00000060733 Ipmk 2410017C19Rik|AA408208|Impk - 10|10 B5.3 inositol polyphosphate multikinase protein-coding 102631499 XR_373478 Gm29822 - - 1 C3|1 predicted gene, 29822 ncRNA 103140 Mm.5731 NM_133994 ENSMUSG00000001665 Gstt3 AI118089 - 10|10 C1 glutathione S-transferase, theta 3 protein-coding 100313512 Mm.281019 E330011M16Rik - - 1 C1.2|1 RIKEN cDNA E330011M16 gene unknown 258269 Mm.377403 NM_146272 ENSMUSG00000063221 Olfr930 MOR171-46 - 9|9 A5.1 olfactory receptor 930 protein-coding 102467587 n-TPcgg3 n-Tp9 - 11 B3|11 nuclear encoded tRNA proline 3 (anticodon CGG) tRNA 100169875 Gm11159 - - - predicted gene 11159 unknown 105246985 XR_880620 Gm42173 - - X A2|X predicted gene, 42173 ncRNA 545506 Gm5842 EG545506 - 3|3 A3 high mobility group box 1 pseudogene pseudo 108167365 XR_001779180 LOC108167365 - - 9 B uncharacterized LOC108167365 ncRNA 108289 Smt3h2-ps3 Smt3b-pg3 - 10|10 D3 SMT3 suppressor of mif two 3 homolog 2, pseudogene 3 (S. cerevisiae) pseudo 100313519 Mm.453538 NR_030762 ENSMUSG00000077714 Snord17 MBI-43 - 2 G1|2 small nucleolar RNA, C/D box 17 snoRNA 105245191 XR_871772 Gm40678 - - 10 B5.1|10 predicted gene, 40678 ncRNA 76034 5830434F19Rik - - 2|2 RIKEN cDNA 5830434F19 gene protein-coding 17635 Ms58 MMS58 - - minisatellites detected by probe MMS58 other 105244631 XR_867952 Gm40211 - - 4 C6|4 predicted gene, 40211 ncRNA 26895 Mm.12973 NM_172974 ENSMUSG00000026240 Cops7b D1Wsu66e|E130114M23 - 1 C5|1 43.97 cM COP9 signalosome subunit 7B protein-coding 114648 Mmtg2 - - - modifier of mammary tumor growth 2 unknown 112120 Bglq12 - - 18 50.7 cM body growth late QTL 12 unknown 101055703 LOC101055703 - - X E3 40S ribosomal protein S12 pseudogene pseudo 631784 Mm.424878 NM_001039240 ENSMUSG00000079583 Gm7073 - - X A6|X predicted gene 7073 protein-coding 15381 Mm.427321 NM_016884 ENSMUSG00000060373 Hnrnpc AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C - 14 C2|14 26.79 cM heterogeneous nuclear ribonucleoprotein C protein-coding 105242970 XR_882208 Gm39032 - - 7 C|7 predicted gene, 39032 ncRNA 319510 Mm.265834 D830013E24Rik - - 17|17 RIKEN cDNA D830013E24 gene protein-coding 102637100 Mm.372060 XR_377935 Gm26911 - - 6 D3|6 predicted gene, 26911 ncRNA 51792 Mm.294138 NM_016891 ENSMUSG00000007564 Ppp2r1a 6330556D22Rik|PP2A|PR65 - 17|17 A3.2 protein phosphatase 2, regulatory subunit A, alpha protein-coding 68753 Mm.75201 NM_026831 ENSMUSG00000068745 Mybphl 1110037P11Rik - 3|3 F3 myosin binding protein H-like protein-coding 625464 Mm.389676 NM_001177504 ENSMUSG00000072722 Gm6588 EG625464 - 5|5 F predicted gene 6588 protein-coding 100042671 Gm15335 - - 18|18 B3 predicted gene 15335 pseudo 228788 Mm.299979 NM_145536 ENSMUSG00000027474 Ccm2l - - 2|2 H1 cerebral cavernous malformation 2-like protein-coding 259124 Mm.159801 NM_147120 ENSMUSG00000094063 Olfr638 MOR5-1 - 7|7 E3 olfactory receptor 638 protein-coding 664965 Gm7428 EG664965 - 3 A2|3 ribosomal protein S2 pseudogene pseudo 102633623 XR_385080 Gm31407 - - 16 C4|16 predicted gene, 31407 ncRNA 102632541 XR_001782166 LOC102632541 - - 17 E4 uncharacterized LOC102632541 ncRNA 85191 D19Mit88 - - 19 32.23 cM DNA segment, Chr 19, Massachusetts Institute of Technology 88 unknown 102640742 Mm.253544 NR_155437 ENSMUSG00000116097 Gm36738 - - 15 E1|15 predicted gene, 36738 ncRNA 105247329 XR_882888 LOC105247329 - - 6 G3 uncharacterized LOC105247329 ncRNA 667739 Rps6-ps4 Gm13654 - 2|2 C3 ribosomal protein S6, pseudogene 4 protein-coding 545005 LOC545005 - - 14|14 A1 uncharacterized LOC545005 protein-coding 27404 Mm.341004 NM_013851 ENSMUSG00000020620 Abca8b Abca8 - 11 E1|11 72.88 cM ATP-binding cassette, sub-family A (ABC1), member 8b protein-coding 246703 Mm.205996 NM_144897 ENSMUSG00000028070 Naxe AA087124|AI-BP|AIBP|Apoa1bp|Apoa1ip|ESTM37 - 3|3 F1 NAD(P)HX epimerase protein-coding 670059 Vmn2r125 Gm20782 - 4 E2|4 vomeronasal 2, receptor 125 pseudo 108167531 XR_001778557 Gm46039 - - 8 B1.3|8 predicted gene, 46039 ncRNA 111544 Pmv26 Pmv-26 - - polytropic murine leukemia virus 26 other 13089 Mm.482696 NM_007813 ENSMUSG00000040583 Cyp2b13 - - 7 A3|7 14.11 cM cytochrome P450, family 2, subfamily b, polypeptide 13 protein-coding 105245694 XR_874397 Gm41106 - - 14 A3|14 predicted gene, 41106 ncRNA 331188 Mm.351497 NM_199062 ENSMUSG00000096718 Zfp781 A130081B01 - 10|10 C1 zinc finger protein 781 protein-coding 105244197 XR_866421 Gm39847 - - 2 C3|2 predicted gene, 39847 ncRNA 381452 Mm.331067 NM_001243000 ENSMUSG00000094763 Gm1647 - - 3|3 E1 predicted gene 1647 ncRNA 67158 Mm.31537 NM_026006 ENSMUSG00000044982 Sft2d3 2610206C24Rik|AI847965|AW046173 - 18|18 B1 SFT2 domain containing 3 protein-coding 258292 Mm.222992 NM_146295 ENSMUSG00000073111 Olfr446 MOR261-12 - 6|6 B2.1 olfactory receptor 446 protein-coding 106565 Mm.23633 NM_134120 ENSMUSG00000047428 Dlk2 AI413481|DLK-2|Egfl9 - 17|17 C delta like non-canonical Notch ligand 2 protein-coding 110816 Mm.103522 NM_029546 ENSMUSG00000032834 Pwp2 6530411D08Rik|Pwp2h|wdp103 - 10 C1|10 39.72 cM PWP2 periodic tryptophan protein homolog (yeast) protein-coding 71107 4933423L19Rik - - 7|7 RIKEN cDNA 4933423L19 gene protein-coding 71638 Mm.421244 XR_380295 ENSMUSG00000111494 4930431F10Rik - - 10|10 B2 RIKEN cDNA 4930431F10 gene ncRNA 102636969 XR_390575 Gm33893 - - 4 B2|4 predicted gene, 33893 ncRNA 105246512 XR_001782545 Gm41793 - - 18 E3|18 predicted gene, 41793 protein-coding 105246102 Gm41445 - - 16|16 predicted gene, 41445 ncRNA 239405 Mm.193274 NM_172815 ENSMUSG00000051920 Rspo2 2610028F08Rik|AA673245|D430027K22|ftls - 15 B3.1-B3.2|15 16.73 cM R-spondin 2 protein-coding 381272 Mm.239588 NM_001243090 ENSMUSG00000096094 A630095N17Rik Gm1624 - 1|1 C4 RIKEN cDNA A630095N17 gene protein-coding 620235 Mm.35607 NM_001101038 ENSMUSG00000091055 Siglec15 Cd33l3|EG620235|SIGLEC-I - 18|18 E3 sialic acid binding Ig-like lectin 15 protein-coding 108682 Mm.200423 NM_173866 ENSMUSG00000031700 Gpt2 4631422C05Rik|ALT2|AU014768|AU041193|C87201 - 8|8 C3 glutamic pyruvate transaminase (alanine aminotransferase) 2 protein-coding 319519 A430062P19Rik - - 13|13 RIKEN cDNA A430062P19 gene protein-coding 102637086 XR_376155 Gm33988 - - 3 H2|3 predicted gene, 33988 ncRNA 102637020 XM_011244833 Gm33933 - - 14 A1|14 predicted gene, 33933 protein-coding 105243471 XR_870964 Gm39385 - - 9 E2|9 predicted gene, 39385 ncRNA 114641 Mm.379302 NM_053257 ENSMUSG00000073702 Rpl31 Dts - 1|1 B ribosomal protein L31 protein-coding 622570 Gm6335 EG622570 - X|X E1 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene pseudo 100043626 Gm4558 - - 7|7 A3 chromobox protein homolog 3 pseudogene pseudo 100093690 Trnas-gcu - - - transfer RNA serine (anticodon GCU) tRNA 100416331 Api5-ps Gm18045 - 7|7 A3 apoptosis inhibitor 5, pseudogene pseudo 67187 Mm.296106 NM_026021 ENSMUSG00000026974 Zmynd19 2700064H14Rik|AA536891|AU014915|mizip - 2|2 A3 zinc finger, MYND domain containing 19 protein-coding 61812 D2Mit372 - - 2 24.19 cM DNA segment, Chr 2, Massachusetts Institute of Technology 372 unknown 108538 Ms13-31 Ms13-Hf15 - - minisatellite 13-31 detected by M13 phage probe other 78779 Mm.41459 NM_030176 ENSMUSG00000033594 Spata2l 2610039E05Rik|AI648233 - 8|8 E1 spermatogenesis associated 2-like protein-coding 102635902 Gm33121 - - 14|14 predicted gene, 33121 pseudo 22724 Mm.262184 NM_009565 ENSMUSG00000028042 Zbtb7b Thpok|Zfp67|c-Krox - 3 F1|3 39.09 cM zinc finger and BTB domain containing 7B protein-coding 85226 D10Mit196 - - 10 32.28 cM DNA segment, Chr 10, Massachusetts Institute of Technology 196 unknown 432552 Mm.443244 NM_001013783 ENSMUSG00000020401 Fam71b Gari-l3 - 11 B1.1|11 family with sequence similarity 71, member B protein-coding 102639311 XR_875548 Gm35652 - - 15 E3|15 predicted gene, 35652 ncRNA 108168116 n-TLtaa2 Trnal-uaa|n-Tl24 - 13 A3.1|13 nuclear encoded tRNA leucine 2 (anticodon TAA) tRNA 100012 Mm.28722 NM_201258 ENSMUSG00000050810 Oog3 AA617276|C86881 - 4|4 E1 oogenesin 3 protein-coding 102639088 XR_386931 Gm35487 - - X A5|X predicted gene, 35487 ncRNA 100417352 Gm18553 - - 1|1 E4 glutathione S-transferase, mu 5 pseudogene pseudo 102467446 n-TYgta7 n-Ty7 - 13 A3.1|13 nuclear encoded tRNA tyrosine 7 (anticodon GTA) tRNA 66847 Mm.46218 NM_025798 ENSMUSG00000019791 Hint3 0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4 - 10|10 A4 histidine triad nucleotide binding protein 3 protein-coding 100035330 Nilac4 - - 7 64.3 cM nicotine induced locomotor activity 4 unknown 108249 Gapdh-ps1 Gapd-ps1|domes1 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 1 pseudo 210293 Mm.133473 NM_175291 ENSMUSG00000038608 Dock10 9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694 - 1|1 C5 dedicator of cytokinesis 10 protein-coding 105246090 Gm41434 - - 16 B1|16 predicted gene, 41434 pseudo 77863 D730048M23Rik - - - RIKEN cDNA D730048M23 gene protein-coding 28148 Mm.1022 D4Ucla1 - - - DNA segment, Chr 4, University of California at Los Angeles 1 unknown 668468 B230354O11Rik EG668468 - 12|12 A1.3 RIKEN cDNA B230354O11 gene unknown 76522 Mm.275158 NM_133939 ENSMUSG00000044155 Lsm8 2010003I05Rik|AW214405|Naa38 - 6|6 A2 LSM8 homolog, U6 small nuclear RNA associated protein-coding 107460 Rdh2 all-trans - - retinol dehydrogenase 2 protein-coding 327978 Mm.42147 NM_183201 ENSMUSG00000054404 Slfn5 AI956840 - 11|11 C schlafen 5 protein-coding 100101433 Cia42 - - - collagen induced arthritis QTL 42 unknown 75406 Mm.28712 NM_029272 ENSMUSG00000020153 Ndufs7 1010001M04Rik - 10 C1|10 39.72 cM NADH dehydrogenase (ubiquinone) Fe-S protein 7 protein-coding 18673 Mm.263862 NM_008831 ENSMUSG00000038845 Phb Bap32 - 11 59.01 cM|11 D prohibitin protein-coding 666141 Gm7946 EG666141 - 6|6 E1 ribosomal protein L4 pseudogene pseudo 102640853 Gm36821 - - 8|8 predicted gene, 36821 ncRNA 100316667 NR_130324 ENSMUSG00000077038 Mir669f Mirn669f|mmu-mir-669f - 2 A1|2 8.22 cM microRNA 669f ncRNA 58248 Mm.197509 NM_021437 ENSMUSG00000040822 1700123O20Rik MNCb-2990 - 14|14 C2 RIKEN cDNA 1700123O20 gene protein-coding 13051 Mm.44065 NM_009987 ENSMUSG00000052336 Cx3cr1 - - 9|9 F4 chemokine (C-X3-C motif) receptor 1 protein-coding 56447 Mm.29473 NM_019817 ENSMUSG00000060992 Copz1 5930435A22Rik|AA407760|D4Ertd360e - 15 F3|15 58.74 cM coatomer protein complex, subunit zeta 1 protein-coding 493065 Lbm2 - - 2 55.14 cM lean body mass 2 unknown 27816 256O10R - - - DNA segment, 256O10R (Research Genetics) unknown 105244283 XR_866703 Gm39922 - - 2 F1|2 predicted gene, 39922 ncRNA 22319 Mm.273930 NM_009498 ENSMUSG00000028955 Vamp3 D130027G05Rik|VAMP-3|ceb - 4|4 E2 vesicle-associated membrane protein 3 protein-coding 226695 Mm.425061 NM_172648 ENSMUSG00000054203 Ifi205 D3|D3cDNA|Ifi205a - 1 H3|1 80.83 cM interferon activated gene 205 protein-coding 13263 Del(10)65H Del65H - - deletion, Chr 10, Harwell 65 other 53668 D7Hd1 D7Hd1.7 - - DNA segment, Chr 7, Heidelberg 1 unknown 61497 D7Mit207 - - 7 77.13 cM DNA segment, Chr 7, Massachusetts Institute of Technology 207 unknown 102634818 XR_865918 Gm32313 - - 1 H6|1 predicted gene, 32313 ncRNA 668908 Gm14101 - - 2|2 F2 predicted gene 14101 pseudo 100416930 Gm18325 - - 6|6 E3 transcriptional adaptor 1 pseudogene pseudo 269862 Mm.377869 NM_207136 ENSMUSG00000048067 Olfr1349 MOR232-8 - 7|7 A1 olfactory receptor 1349 protein-coding 102632452 XR_382341 Gm30520 - - 13 A5|13 predicted gene, 30520 ncRNA 21687 Mm.14313 NM_013690 ENSMUSG00000006386 Tek AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2 - 4 C5|4 43.34 cM TEK receptor tyrosine kinase protein-coding 100035120 Obq22 - - X 37.29 cM obesity QTL 22 unknown 780892 Ighv1-40 - - 12|12 F2 immunoglobulin heavy variable V1-40 pseudo 100035607 W6q16 - - - weight 6 weeks QTL 16 unknown 117572 DXMgc95 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 95 unknown 100417581 3110067C02Rik - - X|X F3 zinc finger CCCH type containing 14 pseudogene pseudo 75333 4930556A12Rik - - 17|17 RIKEN cDNA 4930556A12 gene protein-coding 100416616 Gm18165 - - 2|2 E1 olfactory receptor 1226 pseudogene pseudo 102639776 XR_381294 Gm36007 - - 12 A1.1|12 predicted gene, 36007 ncRNA 77469 Mm.256423 C030034E14Rik - - X|X RIKEN cDNA C030034E14 gene protein-coding 258910 Mm.389381 NM_146908 ENSMUSG00000109449 Olfr1280 MOR248-1 - 2|2 E3 olfactory receptor 1280 protein-coding 77627 Mm.196288 NM_029946 ENSMUSG00000022441 Efcab6 4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672 - 15|15 E1-E2 EF-hand calcium binding domain 6 protein-coding 108167360 XR_001784865 Gm43837 - - 5 C3.1|5 predicted gene 43837 ncRNA 100035840 Obsty1 - - - obesity 1 unknown 102635994 XR_001778128 Gm33190 - - 7 B4|7 predicted gene, 33190 ncRNA 67300 Mm.254588 NM_001003908 ENSMUSG00000047126 Cltc 3110065L21Rik|CHC|R74732 - 11|11 C clathrin, heavy polypeptide (Hc) protein-coding 320488 Mm.373807 D130039L10Rik - - 4|4 RIKEN cDNA D130039L10 gene ncRNA 102639397 XR_381144 Gm35723 - - 11 A4|11 predicted gene, 35723 ncRNA 102641009 LOC102641009 - - - proline-rich AKT1 substrate 1-like pseudo 20361 Mm.335187 NM_011352 ENSMUSG00000038264 Sema7a 2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal - 9|9 B sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A protein-coding 105244033 XR_865804 Gm39719 - - 1 H5|1 predicted gene, 39719 ncRNA 109737 Hst7 - - - hybrid sterility 7 protein-coding 171382 Mm.218753 NM_134252 ENSMUSG00000036251 Trpm8 CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8 - 1|1 D transient receptor potential cation channel, subfamily M, member 8 protein-coding 257900 Mm.377291 NM_001005230 ENSMUSG00000075206 Olfr1024 MOR197-1 - 2|2 D olfactory receptor 1024 protein-coding 102638524 Gm35067 - - 3|3 predicted gene, 35067 pseudo 258800 Mm.377697 NM_146804 ENSMUSG00000096794 Olfr905 MOR167-1 - 9|9 A5.1 olfactory receptor 905 protein-coding 114684 Dbsty3 - - 12 50.87 cM diabesity 3 unknown 108419 Xmmv26 Env-26|Xmmv-26 - - xenotropic-MCF leukemia virus 26 other 77925 A430102K17Rik - - - RIKEN cDNA A430102K17 gene protein-coding 105246610 XR_877967 Gm41877 - - 19 D2|19 predicted gene, 41877 ncRNA 108169174 XR_001785390 Gm44140 - - 6 G1|6 predicted gene, 44140 ncRNA 100417248 Gm18480 - - 4|4 D2.2 splicing factor 3a, subunit 2 pseudogene pseudo 105245099 XR_871427 Gm40597 - - 10 A1|10 predicted gene, 40597 ncRNA 102637201 XR_881539 Gm34074 - - 4 D3|4 predicted gene, 34074 ncRNA 328833 Mm.329104 NM_001033405 ENSMUSG00000071068 Treml2 AW049306|Gm750|Tlt2 - 17|17 C triggering receptor expressed on myeloid cells-like 2 protein-coding 105243943 XR_865479 Gm39652 - - 1 C2|1 predicted gene, 39652 ncRNA 100043404 Gm4416 - - 16 B5|16 predicted gene 4416 protein-coding 77782 Mm.259114 NM_029977 ENSMUSG00000034206 Polq A430110D14Rik - 16 B3|16 26.32 cM polymerase (DNA directed), theta protein-coding 102635585 Gm32879 - - 1|1 predicted gene, 32879 ncRNA 258944 Mm.377763 NM_146942 ENSMUSG00000075383 Olfr351 MOR127-2 - 2|2 B olfactory receptor 351 protein-coding 100035365 Ccmp4 - - 4 34.92 cM cerebellar cAMP 4 unknown 13215 Mm.41981 NM_010030 ENSMUSG00000006570 Defb2 BD-2 - 8 A2|8 10.45 cM defensin beta 2 protein-coding 105243412 XR_870775 Gm39342 - - 9 B|9 predicted gene, 39342 ncRNA 268816 Mm.440635 NM_001033365 ENSMUSG00000072487 Mroh5 Gm628 - 15|15 D3 maestro heat-like repeat family member 5 protein-coding 102634041 Gm31723 - - 14|14 predicted gene, 31723 ncRNA 245308 Mm.76859 NM_199309 ENSMUSG00000052363 Zdhhc19 Gm1744|Gm616 - 16|16 B3 zinc finger, DHHC domain containing 19 protein-coding 620559 Gm12366 - - 4|4 A5 ribosomal protein S2 pseudogene pseudo 69237 Mm.41800 NM_027000 ENSMUSG00000021149 Gtpbp4 2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1 - 13|13 A1 GTP binding protein 4 protein-coding 666508 Gm8141 EG666508 - 1 E2.1|1 heat shock protein 8 pseudogene pseudo 102634664 XR_384787 Gm32196 - - 16 B1|16 predicted gene, 32196 ncRNA 100034924 Scfq3 - - - subcutaneous fat pad weight QTL 3 unknown 60938 DXMit31 - - X 76.03 cM DNA segment, Chr X, Massachusetts Institute of Technology 31 unknown 102637129 LOC102637129 - - 4 D1 protein S100-A11 pseudogene pseudo 105246845 Gm42066 - - 19|19 predicted gene, 42066 ncRNA 666695 Gm8244 EG666695 - X|X A6 predicted gene 8244 pseudo 108168257 Gm46531 - - 15 D3|15 predicted gene, 46531 pseudo 231098 Mm.189696 NM_177677 ENSMUSG00000053856 Dnajc5g 4922503E23Rik - 5|5 B1 DnaJ heat shock protein family (Hsp40) member C5 gamma protein-coding 624966 Gm6541 EG624966 - 14|14 C1 predicted gene 6541 protein-coding 102636464 Gm33521 - - 8|8 predicted gene, 33521 ncRNA 102642637 LOC102642637 - - - signal recognition particle 14 kDa protein protein-coding 170738 Mm.242532 NM_133207 ENSMUSG00000059742 Kcnh7 9330137I11Rik|Kv11.3|erg3 - 2|2 C1.3 potassium voltage-gated channel, subfamily H (eag-related), member 7 protein-coding 381067 Mm.482723 NM_001164676 ENSMUSG00000061544 Zfp229 - - 17|17 A3.2 zinc finger protein 229 protein-coding 100418301 Gm19129 - - 14|14 B protein phosphatase 1, regulatory (inhibitor) subunit 3F pseudogene pseudo 71093 Mm.87449 NM_153778 ENSMUSG00000037621 Atoh8 4933425C05Rik|Hath6|Math6|bHLHa21|okadin - 6|6 C1 atonal bHLH transcription factor 8 protein-coding 102637427 XR_381251 Gm34237 - - 12 A1.1|12 predicted gene, 34237 ncRNA 61464 D6Mit201 - - 6 77.7 cM DNA segment, Chr 6, Massachusetts Institute of Technology 201 unknown 257794 Olfr962-ps1 EG257794|GA_x5J8B7W60AJ-4787-4010|Gm5015 - 9 A5.1|9 olfactory receptor 962, pseudogene 1 pseudo 108167540 Gm46045 - - 8 C2|8 predicted gene, 46045 pseudo 109881 Mott1 - - - Mott cell formation 1 protein-coding 102640049 Gm28770 - - Y|Y predicted gene 28770 protein-coding 12810 Mm.21325 NM_007728 ENSMUSG00000020953 Coch AW122937|Coch-5B2|D12H14S564E - 12 B3|12 22.11 cM cochlin protein-coding 666361 Vmn2r-ps74 EG666361 - 7|7 D3 vomeronasal 2, receptor, pseudogene 74 pseudo 432675 Gm5435 EG432675 - 12|12 D1 general transcription factor II A, 1 pseudogene pseudo 100529075 NR_037681 ENSMUSG00000080486 Snord100 MBII-429|Z51 - 10 11.1 cM|10 A4 small nucleolar RNA, C/D box 100 snoRNA 257979 Mm.377322 NM_001005568 ENSMUSG00000095156 Olfr1281 MOR248-14P|MOR248-18 - 2|2 E3 olfactory receptor 1281 protein-coding 17357 Mm.424974 NM_010807 ENSMUSG00000047945 Marcksl1 AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp - 4 D2.2|4 63.26 cM MARCKS-like 1 protein-coding 102639863 Gm21777 - - Y|Y predicted gene, 21777 protein-coding 102640316 Gm36413 - - 17|17 predicted gene, 36413 ncRNA 333563 Gm5133 EG333563 - X|X D fibronectin type III domain containing 3C2 pseudogene pseudo 100417461 Gm18623 - - 12|12 B3 3-phosphoglycerate dehydrogenase pseudogene pseudo 22165 Mm.3264 NM_013698 ENSMUSG00000054892 Txk A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk - 5 C3.2|5 38.44 cM TXK tyrosine kinase protein-coding 105245787 Gm41179 - - 14|14 predicted gene, 41179 ncRNA 20687 Mm.124328 NM_011450 ENSMUSG00000027109 Sp3 D130027J01Rik - 2|2 C3 trans-acting transcription factor 3 protein-coding 545463 Gm14046 Ppia-ps2_1620.1 - 2|2 F1 peptidylprolyl isomerase A (Ppia) pseudogene 2_1620.1 pseudo 20678 Mm.1752 NM_011444 ENSMUSG00000041540 Sox5 A730017D01Rik|AI528773 - 6 G3|6 76.14 cM SRY (sex determining region Y)-box 5 protein-coding 19933 Mm.316592 NM_019647 ENSMUSG00000041453 Rpl21 8430440E03Rik|L21 - 5|5 G3 ribosomal protein L21 protein-coding 19704 Mm.258280 NM_030680 ENSMUSG00000058301 Upf1 B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp - 8 B3.3|8 34.15 cM UPF1 regulator of nonsense transcripts homolog (yeast) protein-coding 436022 Mm.425359 NM_001033548 ENSMUSG00000055809 Dnaaf3 6030429G01Rik|b2b1739Clo - 7|7 A1 dynein, axonemal assembly factor 3 protein-coding 102636186 XR_389047 Dhx58os Gm11547 - 11 D|11 63.51 cM DEAH (Asp-Glu-Ala-His) box polypeptide 58, opposite strand ncRNA 433914 Gm5558 EG433914|Ppia-ps5_892.1 - 5|5 E2 peptidyl-prolyl cis-trans isomerase A pseudogene 5_892.1 pseudo 19604 Rb(7.13)1Oxf Rb1Oxf - - Robertsonian translocation, Chr 7 and 13, Oxford 1 other 28213 D6Wum10 79D7L - - DNA segment, Chr 6, Washington University School of Medicine 10 unknown 100035630 Avptaq1 - - 7 2.89 cM Avp transcript abundance QTL 1 unknown 12895 Mm.227738 NM_009948 ENSMUSG00000078937 Cpt1b Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti - 15 E3|15 44.89 cM carnitine palmitoyltransferase 1b, muscle protein-coding 103993 Bsp - - - black spleen unknown 100035799 Arti1 - - 9 64.02 cM age related thymic involution 1 unknown 20191 Mm.239871 NM_023868 ENSMUSG00000021313 Ryr2 9330127I20Rik|RYR-2 - 13 A1|13 4.38 cM ryanodine receptor 2, cardiac protein-coding 105245922 XR_875170 Gm41302 - - 15 B3.1|15 predicted gene, 41302 ncRNA 64818 Mm.347934 NM_001166157 ENSMUSG00000067615 Krt81 AA589625|Krt2-19 - 15 F2|15 56.9 cM keratin 81 protein-coding 62026 D1Mit512 - - 1 97.68 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 512 unknown 83557 Mm.302567 NM_145833 ENSMUSG00000050966 Lin28a AL024421|Gm10299|Lin-28|Lin28|Tex17|lin-28A - 4|4 D3 lin-28 homolog A (C. elegans) protein-coding 628627 Gm14519 EG628627 - X|X A1.1 predicted gene 14519 protein-coding 102636200 Mm.417280 XR_386228 Gm33335 - - 18 D1|18 predicted gene, 33335 ncRNA 100036410 Wg7 - - - weight gain in high growth mice 7 unknown 22270 Mm.46214 NM_023478 ENSMUSG00000022435 Upk3a 1110017C07Rik|UP3a|UPIII|Upk3 - 15|15 E2 uroplakin 3A protein-coding 214290 Mm.233082 NM_153538 ENSMUSG00000035248 Zcchc6 6030448M23Rik|AA420405 - 13|13 B2 zinc finger, CCHC domain containing 6 protein-coding 102643136 LOC102643136 - - - interferon-induced guanylate-binding protein 1 protein-coding 16672 Mm.289644 NM_027563 ENSMUSG00000043485 Krt34 4733401E01Rik|Ha2|K34|Krt1-4 - 11 D|11 63.38 cM keratin 34 protein-coding 667658 Gm8749 EG667658 - X B|X predicted gene 8749 pseudo 102635696 XR_388103 Gm32968 - - 8 E1|8 predicted gene, 32968 ncRNA 114229 Mm.191035 NM_053244 ENSMUSG00000035773 Kiss1r Gpr54|KiSS-1|kiSS-1R - 10|10 C1 KISS1 receptor protein-coding 624088 Gm13436 Rpl18p - 2|2 B ribosomal protein L18 pseudogene pseudo 67295 Mm.151600 NM_023852 ENSMUSG00000021700 Rab3c 2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886 - 13|13 D2.1 RAB3C, member RAS oncogene family protein-coding 227449 Mm.210188 NM_001122675 ENSMUSG00000038866 Zcchc2 9930114B20Rik|AW212015 - 1|1 E2.1 zinc finger, CCHC domain containing 2 protein-coding 14997 Mm.57004 NM_008205 ENSMUSG00000067201 H2-M9 M9 - 17 B1|17 19.16 cM histocompatibility 2, M region locus 9 protein-coding 277707 Ccdc50-ps EG277707|Gm12699 - 4|4 C6 Ccdc50 retrotransposed pseudogene pseudo 69064 Mm.41915 NM_026928 ENSMUSG00000025466 Fuom Fucu|Le51 - 7|7 F4 fucose mutarotase protein-coding 109279869 LOC109279869 Mm70 - - VISTA enhancer mm70 biological-region 12425 Mm.3521 NM_009827 ENSMUSG00000029193 Cckar AW106902 - 5 C1|5 29.52 cM cholecystokinin A receptor protein-coding 16404 Mm.179747 NM_008398 ENSMUSG00000025348 Itga7 [a]7|alpha7 - 10 D3|10 77.2 cM integrin alpha 7 protein-coding 100418239 Gm19092 - - 7|7 A3 RNA (guanine-9-) methyltransferase domain containing 2 pseudogene pseudo 108264 Uba1y-rs4 Ube1y1-rs4 - - ubiquitin-activating enzyme, Chr Y related sequence 4 pseudo 193053 Mm.377230 NM_207224 ENSMUSG00000060335 Olfr384 GA_x5J8B7U2A8F-1-327|GA_x6K02T2P1NL-3773152-3774090|MOR135-5|Olfr384-ps1|Olfr386 - 11|11 B4 olfactory receptor 384 protein-coding 105245716 Gm41124 - - 14|14 predicted gene, 41124 pseudo 100038914 NM_001024727 Gm16387 EG545952 - 7|7 B3 predicted gene 16387 pseudo 100316865 Mm.455078 XR_392652 Gm10931 - - 4|4 predicted gene 10931 ncRNA 102635860 Gm21724 - - Y|Y predicted gene, 21724 protein-coding 72502 Mm.276109 NM_001081077 ENSMUSG00000025200 Cwf19l1 - - 19|19 C3 CWF19-like 1, cell cycle control (S. pombe) protein-coding 108168174 XR_001781355 Gm46465 - - 14 A1|14 predicted gene, 46465 ncRNA 112061 Swq5 - - - spleen weight QTL 5 unknown 100035419 Wtlr2 - - - weight loss response 2 unknown 214321 Mm.444671 NM_001038995 ENSMUSG00000072974 Gm4787 Adam4b|EG214321 - 12 D1|12 predicted gene 4787 protein-coding 117566 MHAa97h7 - - - DNA segment, MHAa97h7 unknown 105247649 LOC105247649 - - - uncharacterized LOC105247649 ncRNA 105247230 XR_881641 Gm42364 - - 4 E2|4 predicted gene, 42364 ncRNA 100043201 Gm4291 - - 14 D3|14 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102631568 XR_383733 Gm29871 - - 14 E2.3|14 predicted gene, 29871 ncRNA 100534382 Gm21050 - - 16|16 C1.1 discs, large homolog-associated protein 5 pseudogene pseudo 60811 D4Mit42 - - 4 82.64 cM DNA segment, Chr 4, Massachusetts Institute of Technology 42 unknown 100502636 Mm.412607 NR_045748 ENSMUSG00000111556 Gm19299 - - 9 C|9 36.34 cM predicted gene, 19299 ncRNA 260409 Mm.140601 NM_026514 ENSMUSG00000036533 Cdc42ep3 3200001F04Rik|AA986861|Borg2|Cep3|UB1 - 17|17 E3 CDC42 effector protein (Rho GTPase binding) 3 protein-coding 100035135 Eamcd2 Eam2 - 6 77.7 cM experimental autoimmune myocarditis 2 unknown 16298 In(6)48Rk In48Rk - - inversion, Chr 6, Roderick 48 other 14179 Mm.4012 NM_010205 ENSMUSG00000025219 Fgf8 Aigf|Fgf-8 - 19 C3|19 38.75 cM fibroblast growth factor 8 protein-coding 102631749 LOC102631749 - - 8 A2 PDZ and LIM domain protein 5 pseudogene pseudo 100499518 NR_037301 ENSMUSG00000095323 Mir3470a mmu-mir-3470a - 6 C3|6 35.94 cM microRNA 3470a ncRNA 105245676 XR_874185 Gm26991 - - 14 A1|14 predicted gene, 26991 ncRNA 19258 Mm.458796 NM_019933 ENSMUSG00000026384 Ptpn4 PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG - 1 E2.3|1 52.39 cM protein tyrosine phosphatase, non-receptor type 4 protein-coding 62902 D10Mit220 - - 10 34.13 cM DNA segment, Chr 10, Massachusetts Institute of Technology 220 unknown 217294 Mm.297761 NM_146031 ENSMUSG00000041674 BC006965 - - 11|11 E2 cDNA sequence BC006965 ncRNA 108168807 XR_001783523 Gm46772 - - 2 H1|2 predicted gene, 46772 ncRNA 102639782 XR_376601 Gm36013 - - 4 D2.1|4 predicted gene, 36013 ncRNA 102634291 Mm.371204 XR_386812 Gm31912 - - 19 D2|19 predicted gene, 31912 ncRNA 63830 Mm.356096 NR_001461 ENSMUSG00000101609 Kcnq1ot1 Kvlqt1-as|Lit1|Tssc8 - 7 F5|7 88.15 cM KCNQ1 overlapping transcript 1 ncRNA 97730 Mm.410449 C530030P08Rik C80892|Gm10462 - - RIKEN cDNA C530030P08 gene unknown 102631552 XR_380474 Gm29861 - - 10 B4|10 predicted gene, 29861 ncRNA 102632961 XR_373636 Gm30903 - - 1 H1|1 predicted gene, 30903 ncRNA 13177 Mm.291743 NM_010023 ENSMUSG00000024132 Eci1 Dci|eci - 17|17 A3.3 enoyl-Coenzyme A delta isomerase 1 protein-coding 637277 NM_001324525 ENSMUSG00000038651 Sycp2l EG621792|Gm268|Gm40956 - 13|13 A3.3 synaptonemal complex protein 2-like protein-coding 328314 Mm.138047 NR_046157 ENSMUSG00000110235 Gm5086 B230311A21|EG328314 - 13|13 D1 predicted gene 5086 ncRNA 102636066 XR_377073 Gm33239 - - 5 G1.1|5 predicted gene, 33239 ncRNA 666989 Gm8408 EG666989|Hspd1-13p - 15|15 A2 heat shock protein 1 (chaperonin) pseudogene 13 pseudo 233335 Mm.60526 NM_183312 ENSMUSG00000030554 Synm 4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin - 7|7 C synemin, intermediate filament protein protein-coding 328594 Mm.135523 NR_045629 D630010B17Rik Gm811 - 15|15 E3 RIKEN cDNA D630010B17 gene ncRNA 100039543 Gm2302 - - 7|7 B4 predicted gene 2302 pseudo 74628 4930423C22Rik - - 12|12 RIKEN cDNA 4930423C22 gene protein-coding 94061 Mm.295499 NM_053158 ENSMUSG00000029486 Mrpl1 2410002L03Rik|5830418D04Rik|AI462572|L1mt - 5|5 E3 mitochondrial ribosomal protein L1 protein-coding 320376 Mm.210146 NM_178782 ENSMUSG00000036959 Bcorl1 6720425J07Rik|B930011H20Rik - X|X A5 BCL6 co-repressor-like 1 protein-coding 114692 Skull5 L4.1|QTL-S4.1 - - skull morphology 5 unknown 102636775 Gm33754 - - 4|4 predicted gene, 33754 ncRNA 100628596 NR_039589 ENSMUSG00000093036 Mir5127 mmu-mir-5127|mu-mir-5127 - 18 E3|18 55.64 cM microRNA 5127 ncRNA 61418 D5Mit195 - - 5 14.49 cM DNA segment, Chr 5, Massachusetts Institute of Technology 195 unknown 105244951 Gm40472 - - 12|12 predicted gene, 40472 ncRNA 75183 4930535F04Rik - - 19|19 D1 RIKEN cDNA 4930535F04 gene protein-coding 100316689 NR_035452 ENSMUSG00000089214 Mir1931 mir-1931|mmu-mir-1931 - 10 C2|10 47.89 cM microRNA 1931 ncRNA 105244126 XR_866153 Gm39794 - - 2 B|2 predicted gene, 39794 ncRNA 100416379 Gm18084 - - 18|18 A2 ribosomal protein S8 pseudogene pseudo 68708 Mm.23258 NM_026817 ENSMUSG00000022621 Rabl2 1110031N17Rik|AW549303|Rabl2a - 15|15 E3 RAB, member RAS oncogene family-like 2 protein-coding 105244235 XR_866546 Gm13816 - - 2 E1|2 51.29 cM predicted gene 13816 ncRNA 18717 Mm.24222 NM_008844 ENSMUSG00000034902 Pip5k1c AI115456|AI835305|Pip5kIgamma - 10|10 C1 phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma protein-coding 100483 Mm.403624 BB168181 - - - expressed sequence BB168181 unknown 72147 Mm.486504 NM_027656 ENSMUSG00000027583 Zbtb46 2610019F01Rik|4933406L05Rik|BZEL|Btbd4 - 2|2 H4 zinc finger and BTB domain containing 46 protein-coding 109447 Par2 - - 18 44.19 cM pulmonary adenoma resistance 2 unknown 69582 Mm.33220 NM_001033150 ENSMUSG00000028917 Plekhm2 2310034J19Rik|AI854247|mKIAA0842 - 4|4 E1 pleckstrin homology domain containing, family M (with RUN domain) member 2 protein-coding 74048 Mm.273584 NM_028732 ENSMUSG00000020101 Vsir 4632428N05Rik|Dies1|PD-1H|VISTA - 10|10 B4 V-set immunoregulatory receptor protein-coding 76792 Mm.103428 NM_001081236 ENSMUSG00000032840 2410131K14Rik - - 5|5 F RIKEN cDNA 2410131K14 gene protein-coding 104290 Pctr2 Pcts3 - - plasmacytoma resistance 2 unknown 105245856 Gm41245 - - 14|14 predicted gene, 41245 ncRNA 230676 Mm.415218 NM_198170 ENSMUSG00000033253 Szt2 6430407N22|TIGR - 4|4 D2.1 seizure threshold 2 protein-coding 780792 Ighv5-15 Gm16888 - 12|12 F1 immunoglobulin heavy variable 5-15 other 100041922 Gm20892 - - Y|Y predicted gene, 20892 protein-coding 97503 W91776 - - - expressed sequence W91776 protein-coding 100126786 Wg2c - - - weight gain in high growth mice 2c unknown 108122 Fabp3-rs2 Fabph-2|Fabph-rs2|Fabph2 - - fatty acid binding protein 3, muscle and heart, related sequence 2 protein-coding 732528 Gt(pU21)39Imeg Ayu21-39|GtAyu21-39 - - gene trap 39, Institute of Molecular Embryology and Genetics unknown 16386 Is(HSR;1)2Icg Is2Icg - - insertion, homogeneous staining region, Chr 1, Inst of Cytology and Genetics Novosibirsk 2 other 102632338 XR_377869 Gm30437 Gm44628 - 6 D1|6 predicted gene, 30437 ncRNA 51885 Mm.383499 NM_153387 ENSMUSG00000027263 Tubgcp4 4932441P04Rik|76p|D2Ertd435e|GCP-4 - 2 E5|2 60.37 cM tubulin, gamma complex associated protein 4 protein-coding 68723 Mm.208047 NM_133698 ENSMUSG00000041991 Hrnr 1110033K19Rik|A530063N20Rik|S100a18 - 3 F2.1|3 hornerin protein-coding 105246753 XR_878673 Gm41995 - - 3 A1|3 predicted gene, 41995 ncRNA 77134 Mm.490274 NM_029872 ENSMUSG00000007836 Hnrnpa0 1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0 - 13|13 B1 heterogeneous nuclear ribonucleoprotein A0 protein-coding 103575 AA516831 - - - expressed sequence AA516831 unknown 72754 Mm.29329 NM_172415 ENSMUSG00000040964 Arhgef10l 2810441C07Rik - 4|4 D3 Rho guanine nucleotide exchange factor (GEF) 10-like protein-coding 667244 Vmn2r-ps139 EG667244|Gm8536 - Y|Y A1 vomeronasal 2, receptor, pseudogene 139 pseudo 12215 Mm.726 NM_009768 ENSMUSG00000023175 Bsg AI115436|AI325119|CD147|EMMPRIN|HT-7 - 10 C1|10 39.72 cM basigin protein-coding 105246145 XR_876187 Gm41481 - - 16 C3.3|16 predicted gene, 41481 ncRNA 102641385 Mm.261753 XR_878766 Gm38554 Gm43277 - 5 F|5 predicted gene, 38554 ncRNA 102465208 NR_105815 ENSMUSG00000098433 Mir6391 Gm27914|mmu-mir-6391 - 14|14 E4 microRNA 6391 ncRNA 104601 Mm.84725 NM_170671 ENSMUSG00000039110 Mycbpap 4932408B01Rik|AMAP-1|AW125474 - 11|11 D MYCBP associated protein protein-coding 111014 Hsp86-ps3 86kDa - - heat shock protein 86, pseudogene 3 pseudo 100039661 Gm2360 - - 15 A1|15 UDP glycosyltransferases 3 family, polypeptide A1 pseudogene pseudo 61865 D1Mit363 - - 1 10.58 cM DNA segment, Chr 1, Massachusetts Institute of Technology 363 unknown 381530 Mm.460005 NM_001012323 ENSMUSG00000078672 Mup20 Gm12560|Mup24|darcin - 4|4 B3 major urinary protein 20 protein-coding 16121 Mm.291979 Igk-V4 1700129E19Rik - - immunoglobulin kappa chain variable 4 (V4) other 104265 Trg1 - - 3|3 glycine transfer RNA 1 tRNA 665344 Vmn2r-ps119 EG665344 - 17|17 A3.2 vomeronasal 2, receptor, pseudogene 119 pseudo 59310 Mm.5178 NM_021611 ENSMUSG00000005474 Myl10 1700027I08Rik|Mylc2pl|PLRLC - 5|5 G2 myosin, light chain 10, regulatory protein-coding 619304 Mm.391209 NM_001033808 I830134H01Rik - - 19|19 C2 RIKEN cDNA I830134H01 gene unknown 269132 Mm.23782 NM_177756 ENSMUSG00000032649 Colgalt2 AI427652|D730024P12|Glt25d2 - 1|1 G2 collagen beta(1-O)galactosyltransferase 2 protein-coding 28250 Mm.255586 NM_030687 ENSMUSG00000030237 Slco1a4 AI785519|Oatp1a4|Oatp2|Slc21a5 - 6|6 G2 solute carrier organic anion transporter family, member 1a4 protein-coding 112163567 Mm.27705 AA607152 - - - expressed sequence AA607152 protein-coding 100036373 Blct1 - - - blood cell traits 1 unknown 546524 Mm.425718 Gm5953 EG546524 - 12 A1.2|12 predicted gene 5953 unknown 70333 Mm.171370 NM_145822 ENSMUSG00000047649 Cd3eap 1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49 - 7|7 A3 CD3E antigen, epsilon polypeptide associated protein protein-coding 109280094 LOC109280094 Mm879 - - VISTA enhancer mm879 biological-region 67729 Mm.57648 NM_026345 ENSMUSG00000032718 Mansc1 9130403P13Rik - 6|6 G1 MANSC domain containing 1 protein-coding 492909 Mnif1 - - - macronutrient intake, fat 1 unknown 108167948 XR_001780518 Gm46308 - - 12 C1|12 predicted gene, 46308 ncRNA 74410 Mm.21591 NM_028921 ENSMUSG00000026885 Ttll11 4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e - 2 B|2 23.9 cM tubulin tyrosine ligase-like family, member 11 protein-coding 171258 Mm.377212 NM_134224 ENSMUSG00000094379 Vmn1r202 V1ri7 - 13|13 A3.1 vomeronasal 1 receptor 202 protein-coding 102633326 Gm31178 - - 4|4 predicted gene, 31178 ncRNA 492972 Hdlq24 - - 6 74.64 cM HDL QTL 24 unknown 319168 Mm.250564 NM_175659 ENSMUSG00000069302 Hist1h2ah - - 13|13 A3.1 histone cluster 1, H2ah protein-coding 232785 Mm.482185 NR_027963 ENSMUSG00000072653 Zfp783 A230106D06Rik|Gm20494 - 6|6 B2.3 zinc finger protein 783 ncRNA 19324 Mm.271944 NM_008996 ENSMUSG00000020149 Rab1a Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012 - 11 A3.1|11 12.92 cM RAB1A, member RAS oncogene family protein-coding 57905 Mm.241546 NM_133934 ENSMUSG00000030056 Isy1 5830446M03Rik|AI181014|AU020769 - 6|6 D1 ISY1 splicing factor homolog protein-coding 100034890 Vmbic7 - - 13 63.93 cM ventral midbrain iron content 7 unknown 18571 Mm.29816 NM_011052 ENSMUSG00000032504 Pdcd6ip AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375 - 9|9 F3 programmed cell death 6 interacting protein protein-coding 259108 Mm.377850 NM_147104 ENSMUSG00000073975 Olfr550 MOR16-1 - 7|7 E3 olfactory receptor 550 protein-coding 105244558 XR_867639 Gm40151 - - 3 G3|3 predicted gene, 40151 ncRNA 216285 Mm.19287 NM_172553 ENSMUSG00000036602 Alx1 AI314867|C130005I02|Cart1 - 10 D1|10 53.56 cM ALX homeobox 1 protein-coding 22293 Mm.138278 NM_053077 ENSMUSG00000022243 Slc45a2 Aim-1|Aim1|Dbr|Matp|Oca4|blanc-sale|bls|uw - 15 A1|15 5.4 cM solute carrier family 45, member 2 protein-coding 69044 1810017P11Rik - - - RIKEN cDNA 1810017P11 gene protein-coding 100504115 Gm20070 - - 15 D1|15 21.21 cM ubiquitin-conjugating enzyme E2 C-like pseudo 234796 Mm.86446 NM_146219 ENSMUSG00000031828 Klhl36 - - 8|8 E1 kelch-like 36 protein-coding 171405 Mm.326517 NM_134256 ENSMUSG00000067656 Slc22a27 OAT6-L|OAT6-S|Oat9 - 19|19 A solute carrier family 22, member 27 protein-coding 21132 T(2;4)1Ca T1Ca - - reciprocal translocation, Chr 2 and 4, Carter 1 other 19882 Mm.3901 NM_009074 ENSMUSG00000032584 Mst1r CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK - 9 59.07 cM|9 F1 macrophage stimulating 1 receptor (c-met-related tyrosine kinase) protein-coding 100416914 Gm18317 - - 13|13 C3 stomatin (Epb7.2)-like 2 pseudogene pseudo 105244388 XR_867057 Gm40007 - - 2 H3|2 predicted gene, 40007 ncRNA 19184 Mm.272361 NM_008950 ENSMUSG00000020708 Psmc5 mSUG1 - 11|11 E1 protease (prosome, macropain) 26S subunit, ATPase 5 protein-coding 100035560 Eae33 - - - experimental allergic encephalomyelitis susceptibility 33 unknown 546896 Mm.439626 NM_001081301 ENSMUSG00000071494 Olfr455 EG546896|MOR0-17_p|MOR0-2P|MORO-2|Olfr455-ps1 - 6|6 B2.1 olfactory receptor 455 protein-coding 67378 Mm.292107 NM_026116 ENSMUSG00000031755 Bbs2 2410125H22Rik|AI447581 - 8|8 C5 Bardet-Biedl syndrome 2 (human) protein-coding 104206 Lzp-r - - 10|10 P lysozyme regulator protein-coding 102747 Mm.269413 NM_145616 ENSMUSG00000047766 Lrrc49 AI430817|AW050057|D430025H09Rik|PGs4|p79 - 9|9 B leucine rich repeat containing 49 protein-coding 16246 In(14)22Rk-p In(14)22Rk|In22Rk - - inversion, Chr 14, Roderick 22, proximal other 53961 9530053J19Rik AA562270 - - RIKEN cDNA 9530053J19 gene protein-coding 100422786 Gm11242 - - 4|4 C3 component of oligomeric golgi complex 5 pseudogene pseudo 102641841 XR_001780997 Gm38580 - - 13 C1|13 predicted gene, 38580 ncRNA 100039213 Mm.441404 NM_001270506 ENSMUSG00000098463 Cphx2 Gm2104 - 14 A3|14 cytoplasmic polyadenylated homeobox 2 protein-coding 493074 Lmr10 - - - leishmaniasis resistance 10 unknown 384575 Gm5324 EG384575 - 7|7 A3 predicted gene 5324 pseudo 408067 Mm.315879 NM_001076791 ENSMUSG00000059839 Zfp874b 9630025I21Rik|Rslcan16 - 13|13 B3 zinc finger protein 874b protein-coding 674597 Gm9625 - - 13 B3|13 ribosomal protein, large, P0 pseudogene pseudo 102639230 Gm29399 - - Y|Y predicted gene 29399 ncRNA 108169019 n-THgtg10 Trnah-gug|n-Th10 - 4 C3|4 nuclear encoded tRNA histidine 10 (anticodon GTG) tRNA 102639866 XR_387461 Gm36077 - - 1 G1|1 predicted gene, 36077 ncRNA 102632448 XR_381627 Gm30518 - - 12 C1|12 predicted gene, 30518 ncRNA 258720 Mm.377654 NM_146725 ENSMUSG00000062434 Olfr516 MOR268-2 - 7|7 E3 olfactory receptor 516 protein-coding 100040133 Gm14608 - - X|X A4 LOC52392 pseudogene pseudo 105886299 Mm.28394 NM_001309799 ENSMUSG00000109350 Gm44805 Apoc4-apoc2 - 7 A3|7 predicted gene 44805 protein-coding 105245002 Gm40517 - - 9|9 predicted gene, 40517 ncRNA 668363 Gm9129 EG668363 - 10|10 B4 phosphoglucomutase 2 pseudogene pseudo 100041489 Mm.383855 Gm3367 - - 12 C3|12 predicted gene 3367 ncRNA 78123 4930448L02Rik - - 11|11 RIKEN cDNA 4930448L02 gene protein-coding 102633676 XR_375677 Gm31443 - - 3 C|3 predicted gene, 31443 ncRNA 100534350 Gm21039 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 102467491 n-TCgca10 n-Tc10 - 6 B2.3|6 nuclear encoded tRNA cysteine 10 (anticodon GCA) tRNA 97097 C85328 - - - expressed sequence C85328 protein-coding 631415 Gm20760 - - 4 E1|4 predicted gene, 20760 pseudo 27414 Mm.76659 NM_013789 ENSMUSG00000030839 Sergef DelGEF|Gef|Gnef|Gnefr - 7|7 B3 secretion regulating guanine nucleotide exchange factor protein-coding 111601 Pmv67 Pmv-67 - - polytropic murine leukemia virus 67 other 102640328 Mm.250777 NR_153318 LOC102640328 - - X C3 uncharacterized LOC102640328 ncRNA 670472 Mm.425705 NM_001099312 ENSMUSG00000078260 Gm11569 - - 11 D|11 predicted gene 11569 protein-coding 102639361 Mm.406831 XR_385600 Gm35692 - - 17 C|17 predicted gene, 35692 ncRNA 18745 pk - - - plucked unknown 19408 Rare6 - - - retinoic acid response element 6 other 666844 Gm8323 100040555|EG666844|Gm2838 - 14 A1|14 ribosomal protein L3 pseudogene pseudo 100416116 Gm11560 - - 11|11 D Y box protein 1 pseudogene pseudo 102465653 NR_106046 ENSMUSG00000098483 Mir7078 Gm27386|mmu-mir-7078 - 8|8 E1 microRNA 7078 ncRNA 14679 Mm.271703 NM_010306 ENSMUSG00000000001 Gnai3 AI158965|AW537698|Galphai3|Gnai-3 - 3 F2.3|3 46.83 cM guanine nucleotide binding protein (G protein), alpha inhibiting 3 protein-coding 102633421 Gm31252 - - 11 D|11 predicted gene, 31252 pseudo 102465635 NR_106017 ENSMUSG00000098783 Mir7050 Gm27578|mmu-mir-7050 - 7|7 B1 microRNA 7050 ncRNA 102467595 n-TSaga2 n-Ts11 - - nuclear encoded tRNA serine 2 (anticodon AGA) tRNA 100502649 Gm17396 - - 9|9 69.13 cM predicted gene, 17396 ncRNA 67324 Mm.201455 1700042D18Rik - - 13|13 RIKEN cDNA 1700042D18 gene protein-coding 664849 Mm.258466 NR_003376 Gm7367 EG664849 - 7 B5|7 1110014K08Rik pseudogene pseudo 68964 Mm.285785 NM_001013256 ENSMUSG00000020898 Ctc1 1500010J02Rik|AAF-132|AAF132 - 11|11 B3 CTS telomere maintenance complex component 1 protein-coding 192786 Mm.254404 NM_175258 ENSMUSG00000037533 Rapgef6 A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052 - 11|11 B1.3 Rap guanine nucleotide exchange factor (GEF) 6 protein-coding 100418476 Gm19234 - - 12|12 C3 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene pseudo 102639383 XR_389216 Gm35710 - - 11 E2|11 predicted gene, 35710 ncRNA 102634174 Mm.392213 NR_152732 ENSMUSG00000085327 Gm16104 - - 10 C1|10 39.72 cM predicted gene 16104 ncRNA 17919 Mm.260098 NM_008661 ENSMUSG00000025885 Myo5b AI661750|mKIAA1119 - 18 E2|18 50.7 cM myosin VB protein-coding 107587 Mm.46336 NM_054049 ENSMUSG00000022330 Osr2 5430409I15Rik|Osr2A|Osr2B - 15 B3.1|15 14.46 cM odd-skipped related 2 protein-coding 74525 Mm.34182 NM_028982 ENSMUSG00000030207 Fam234b 8430419L09Rik|mKIAA1467 - 6|6 G1 family with sequence similarity 234, member B protein-coding 71306 Mm.23242 NM_027756 ENSMUSG00000031647 Mfap3l 4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626 - 8|8 B3.1 microfibrillar-associated protein 3-like protein-coding 233977 Mm.490347 NM_001033319 ENSMUSG00000037519 Ppfia1 C030014K08Rik|C87158|LIP.1|LIP1 - 7|7 F5 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 protein-coding 226413 Mm.26930 NM_001081078 ENSMUSG00000026354 Lct Gm100|LAC|LPH|Lphl - 1 E3|1 55.8 cM lactase protein-coding 73272 Mm.116804 NR_015485 ENSMUSG00000101009 1700108F19Rik 1700020I02Rik|BB065030 - 14|14 D3 RIKEN cDNA 1700108F19 gene ncRNA 100504178 Mm.274329 NR_152257 ENSMUSG00000087050 Dhrs13os A030003K02Rik|AA682085 - 11|11 B5 dehydrogenase/reductase (SDR family) member 13, opposite strand ncRNA 102631794 Gm30040 - - 10|10 predicted gene, 30040 ncRNA 102638113 Mm.428123 XR_377576 Gm34752 - - 6 B2.1|6 predicted gene, 34752 ncRNA 96882 C78444 - - - expressed sequence C78444 protein-coding 102636092 XR_390683 Gm33260 - - 4 C3|4 predicted gene, 33260 ncRNA 17075 Mm.4259 NM_008532 ENSMUSG00000045394 Epcam CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40 - 17|17 E4 epithelial cell adhesion molecule protein-coding 383326 Gm5237 - - 18 C|18 predicted gene 5237 pseudo 14858 Mm.422778 NM_008182 ENSMUSG00000057933 Gsta2 Gst2-2|Gstc-2|Gstc2 - 9 E1|9 43.65 cM glutathione S-transferase, alpha 2 (Yc2) protein-coding 18101 Mm.487342 NM_008703 ENSMUSG00000019865 Nmbr BB182387 - 10|10 A2 neuromedin B receptor protein-coding 61550 D9Mit150 - - 9 67.94 cM DNA segment, Chr 9, Massachusetts Institute of Technology 150 unknown 112231 Pid2 - - 9 20.74 cM prion incubation determinant 2 unknown 100504719 Mm.483539 Gm20371 - - 6|6 35.1 cM predicted gene, 20371 unknown 666933 Gm8371 EG666933 - 13 C2|13 ribosomal protein L17 pseudogene pseudo 104356 Rnrb - - - ribosomal RNA, fragment B rRNA 102636516 XR_384807 Gm15742 - - 16 B2|16 21.34 cM predicted gene 15742 ncRNA 100041989 Gm3589 100041956|Gm3611 - 7|7 A1 zinc finger protein 772 pseudogene pseudo 97999 R75246 - - - expressed sequence R75246 unknown 100303741 Gm10308 - - 17|17 predicted gene 10308 unknown 100035478 Bmd27 Bmd20 - - bone mineral density 27 unknown 399583 Mm.382273 E330034L11Rik - - - RIKEN cDNA E330034L11 gene protein-coding 434555 Mm.379679 NR_033707 ENSMUSG00000110097 Zscan4a BQ559217 - 7|7 A1 zinc finger and SCAN domain containing 4A pseudo 108168244 XR_001781702 Gm46519 - - 15 D3|15 predicted gene, 46519 ncRNA 732531 Gt(pU21)B129Imeg Ayu21-B129 - - gene trap B129, Institute of Molecular Embryology and Genetics unknown 545178 Gm15310 - - 16 C4|16 developmental pluripotency associated 5 pseudogene pseudo 100035442 Brml1 - - - bone response to mechanical loading 1 unknown 100041479 Mm.393659 NR_126079 ENSMUSG00000092353 Gm3363 - - 2 A3|2 predicted gene 3363 ncRNA 100113413 Trav6-7-dv9 Gm13909|Trav6-7/dv9 - 14|14 C2 T cell receptor alpha variable 6-7-DV9 other 627352 Mm.395111 NM_001326287 Morf4l1b EG627352|Gm6747 - 19|19 C3 mortality factor 4 like 1B protein-coding 108159 Mm.29301 NM_178648 ENSMUSG00000052906 Ubxn8 D0H8S2298E|Rep-8|Rep8h|Ubxd6 - 8|8 A3 UBX domain protein 8 protein-coding 102635854 XR_386342 Gm33090 - - 18 E2|18 predicted gene, 33090 ncRNA 107580 Nr1d2-rs2 Rerbb-rs2 - - nuclear receptor subfamily 1, group D, member 2, related sequence 2 protein-coding 544944 Cbx3-ps5 EG544944|Gm5792 - 13|13 B3 chromobox 3, pseudogene 5 pseudo 631429 Gm7063 EG631429 - 1|1 C1.1 apurinic/apyrimidinic endonuclease 1 pseudogene pseudo 100041121 Gm10144 - - 9|9 C predicted pseudogene 10144 pseudo 102635671 Mm.405254 XR_389633 Gm32950 - - 3 A3|3 predicted gene, 32950 ncRNA 217473 Mm.130422 NM_146033 ENSMUSG00000036188 Ankmy2 AI035571|ZMYND20 - 12|12 A3 ankyrin repeat and MYND domain containing 2 protein-coding 80981 Mm.266840 NM_025404 ENSMUSG00000034936 Arl4d 1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5 - 11|11 D ADP-ribosylation factor-like 4D protein-coding 104422 Eem1 - - - extra-embryonic membrane 1 protein-coding 100041897 Gm20890 - - Y|Y predicted gene, 20890 protein-coding 114340 Wta3 - - 14 11.53 cM weight adult 3 unknown 72296 Mm.27687 NM_028188 ENSMUSG00000041263 Rusc1 2210403N08Rik|AA408288|NESCA - 3|3 F1 RUN and SH3 domain containing 1 protein-coding 62201 D15Mit75 - - 15 51.39 cM DNA segment, Chr 15, Massachusetts Institute of Technology 75 unknown 434234 Mm.38237 NM_028129 ENSMUSG00000030924 Rexo5 2610020H08Rik - 7|7 F2 RNA exonuclease 5 protein-coding 102632645 Mm.78329 XR_001783792 Gm30667 - - 3 A1|3 predicted gene, 30667 ncRNA 18730 Mm.482470 NM_011094 Pira7 16M2 - 7|7 paired-Ig-like receptor A7 protein-coding 105244137 XR_866182 Gm39804 - - 2 B|2 predicted gene, 39804 ncRNA 97078 C79860 - - - expressed sequence C79860 unknown 791373 B930078G14Rik - - - RIKEN cDNA B930078G14 gene protein-coding 104382 Mm.271593 NM_001005477 ENSMUSG00000034384 Barhl2 E130309B19Rik|MBH1 - 5|5 E5 BarH like homeobox 2 protein-coding 100035976 Ccmp7 - - - cerebellar cAMP 7 unknown 100286843 Mm.475299 NR_045949 ENSMUSG00000085810 Gm16325 - - 3 H2|3 predicted gene 16325 ncRNA 666654 Gm8215 EG666654 - X|X A6 galactose mutarotase pseudogene pseudo 327986 Gm11444 - - 11 C|11 predicted gene 11444 protein-coding 103795 Mm.384921 AI594671 - - - expressed sequence AI594671 protein-coding 637079 Mm.462671 XM_006509813 ENSMUSG00000110622 Gm16486 - - 8|8 B3.3 predicted gene 16486 protein-coding 380921 Mm.89591 NM_001081336 ENSMUSG00000034731 Dgkh 5930402B05Rik|D130015C16|DGK - 14|14 D3 diacylglycerol kinase, eta protein-coding 238693 Mm.478914 NM_001007575 ENSMUSG00000071291 Zfp58 A530094I17Rik|Mfg-1|Mfg1|Rslcan5|Zfp817 - 13|13 B3 zinc finger protein 58 protein-coding 102466791 NR_106001 ENSMUSG00000099197 Mir7034 Gm27372|mmu-mir-7034 - 5|5 G2 microRNA 7034 ncRNA 319469 Mm.437992 NR_045633 ENSMUSG00000021557 A230056J06Rik - - 13|13 B2 RIKEN cDNA A230056J06 gene ncRNA 111983 Bdln1 Bdln - - body length 1 unknown 61300 D3Mit103 - - 3 46.83 cM DNA segment, Chr 3, Massachusetts Institute of Technology 103 unknown 209753 Cyp2c52-ps EG209753|Gm4762 - 19 C3|19 cytochrome P450, family 2, subfamily c, polypeptide 52, pseudogene pseudo 100035957 Fatpad7 - - - fat pad 7 unknown 100503870 Gm19936 - - 9 B|9 30.51 cM developmental pluripotency-associated protein 2-like pseudo 666862 Gm8332 EG666862 - 12|12 D2 eukaryotic translation initiation factor 1A-like 2 pseudogene pseudo 100034933 Ethm4 - - 11 62.4 cM ethanol induced thermoregulation 4 unknown 102639681 XR_389324 Gm35936 - - 5 E1|5 predicted gene, 35936 ncRNA 68080 Mm.266328 NM_024216 ENSMUSG00000029464 Gpn3 A930018B01Rik|Atpbd1c|D5Ertd708e - 5 F|5 62.33 cM GPN-loop GTPase 3 protein-coding 100861691 XM_017318924 LOC100861691 - - - X-linked lymphocyte-regulated protein PM1-like protein-coding 62113 D12Mit76 - - 12 41.42 cM DNA segment, Chr 12, Massachusetts Institute of Technology 76 unknown 109280004 LOC109280004 Mm935 - - VISTA enhancer mm935 biological-region 110137 Tlag1 Tls-1|Tls1 - - T lymphoma attenuation gene 1 protein-coding 619328 Mm.325722 NR_045705 ENSMUSG00000110998 I730028E13Rik - - 9 B|9 RIKEN cDNA I730028E13 gene ncRNA 105247031 XR_880787 Gm42213 - - 3 B|3 predicted gene, 42213 ncRNA 110882 Ltrm2 Ltrm-2 - - LTR mink cell focus forming murine leukemia viral locus 2 protein-coding 108168125 n-TDgtc13 Trnad-guc|n-Td13 - 13 A3.1|13 nuclear encoded tRNA aspartic acid 13 (anticodon GTC) tRNA 66760 Mm.233631 NR_040519 ENSMUSG00000085785 Sox5os3 4933425H06Rik - 6|6 G3 SRY (sex determining region Y)-box 5, opposite strand 3 ncRNA 17345 Mm.4078 NM_001081117 ENSMUSG00000031004 Mki67 D630048A14Rik|Ki-67|Ki67 - 7|7 F3 antigen identified by monoclonal antibody Ki 67 protein-coding 17192 Mm.7142 NM_013595 ENSMUSG00000035478 Mbd3 AI181826|AU019209 - 10 C1|10 39.72 cM methyl-CpG binding domain protein 3 protein-coding 69366 1700013A02Rik - - 5|5 RIKEN cDNA 1700013A02 gene protein-coding 108168395 Mm.391131 NM_001362365 ENSMUSG00000110277 Gm45871 - - 18 E4|18 predicted gene 45871 protein-coding 20999 T(;16)129Dn T(?;16)129Dn|T129Dn - - reciprocal translocation, Chr and 16, Davisson 129 other 61821 D2Mit345 - - - DNA segment, Chr 2, Massachusetts Institute of Technology 345 unknown 73192 Mm.25042 NM_001081056 ENSMUSG00000034667 Xpot 1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T - 10|10 D2 exportin, tRNA (nuclear export receptor for tRNAs) protein-coding 71970 Mm.422716 NM_183088 ENSMUSG00000034173 Zbed5 2410018M08Rik|Scand3 - 5|5 G1.3 zinc finger, BED type containing 5 protein-coding 102638261 XR_375830 Gm34865 - - 3 F1|3 predicted gene, 34865 ncRNA 21187 T(4;7)1Rl TRl - - reciprocal translocation, Chr 4 and 7, Russell 1 other 52278 D1Ertd185e - - 1 62.56 cM DNA segment, Chr 1, ERATO Doi 185, expressed unknown 245347 Mm.327568 NM_001101484 Gm4984 AI428901|EG245347 - X|X A1.1 predicted pseudogene 4984 protein-coding 667849 Gm8843 EG667849 - 15|15 E3 actin related protein 2/3 complex, subunit 1A pseudogene pseudo 68394 Mm.425201 NM_026714 ENSMUSG00000028689 Ccdc163 0610037D15Rik|4933430J04Rik - 4|4 D1 coiled-coil domain containing 163 protein-coding 108626 Iap5rc13 - - - intracisternal A-type particle, U5 region, SINE repeat c-13 other 359891 DXMgc12 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 12 unknown 106080 AW742948 - - - expressed sequence AW742948 protein-coding 545546 2210017I01Rik - - 3|3 F1 RIKEN cDNA 2210017I01 gene protein-coding 621103 Gm6201 - - 14 E2.3|14 plastin 3 (T-isoform) pseudogene pseudo 100416828 Gm16030 - - 15|15 A1 FK506 binding protein 3 pseudogene pseudo 15171 Mm.10096 NM_010410 ENSMUSG00000045471 Hcrt PPOX - 11 D|11 63.6 cM hypocretin protein-coding 102632224 LOC102632224 - - 13 C1 60S ribosomal protein L17 pseudogene pseudo 105247016 XR_880730 Gm42199 - - 3 A3|3 predicted gene, 42199 ncRNA 78914 Mm.35104 NM_030221 ENSMUSG00000031090 Nadsyn1 9130012B15Rik - 7|7 F5 NAD synthetase 1 protein-coding 100038976 Gm12711 - - 11|11 A4 predicted gene 12711 protein-coding 432561 Mm.461289 NM_001004165 Gm9837 - - 11 B1.3|11 predicted gene 9837 unknown 666951 Gm8376 EG666951 - 17 A1|17 mRNA turnover 4 pseudogene pseudo 105244080 LOC105244080 - - 2 A1 thymosin beta-15A pseudogene pseudo 59022 Mm.29945 NM_021519 ENSMUSG00000015092 Edf1 0610008L11Rik|AA409425 - 2|2 A3 endothelial differentiation-related factor 1 protein-coding 53139 167c5-T7 - - - DNA segment, 167c5-T7 unknown 58206 Mm.116789 NM_021397 ENSMUSG00000006310 Zbtb32 4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp - 7|7 B1 zinc finger and BTB domain containing 32 protein-coding 108167915 XR_001780281 LOC108167915 - - 11 C uncharacterized LOC108167915 ncRNA 102638666 XR_379171 Gm35176 - - 9 A2|9 predicted gene, 35176 ncRNA 105243541 Gm39433 - - 9|9 predicted gene, 39433 ncRNA 83563 Mm.242827 NM_031388 ENSMUSG00000055780 Usp26 - - X|X A5 ubiquitin specific peptidase 26 protein-coding 68023 Mm.482335 NM_026513 ENSMUSG00000078931 Pdf 2610019N19Rik - 8|8 D3 peptide deformylase (mitochondrial) protein-coding 109806 H18 H-18 - - histocompatibility 18 protein-coding 102638972 Gm35405 - - 10 D3|10 signal recognition particle 19 pseudogene pseudo 77339 9430051O21Rik - - 4|4 RIKEN cDNA 9430051O21 gene protein-coding 243771 Mm.268462 NM_172893 ENSMUSG00000038507 Parp12 9930021O16|AA409132|AA536654|ARTD12|PARP-12|Zc3hdc1 - 6|6 B1 poly (ADP-ribose) polymerase family, member 12 protein-coding 102442 Mm.222473 NM_176935 ENSMUSG00000053641 Dennd4a AI115600|AI851943|F730015K02Rik - 9|9 C DENN/MADD domain containing 4A protein-coding 102645 B930001P03Rik AL024234 - 9|9 B RIKEN cDNA B930001P03 gene protein-coding 100035666 Hgbq1 - - 16 23.27 cM hemoglobin QTL 1 unknown 100041481 Gm3364 - - 5 B3|5 predicted gene 3364 protein-coding 68162 Mm.35159 NR_015488 A930003A15Rik AI853191 - 16|16 A3 RIKEN cDNA A930003A15 gene ncRNA 100416719 Gm18213 - - 17|17 B1 olfactory receptor 761 pseudogene pseudo 100042891 Mm.465205 NM_001105151 ENSMUSG00000094107 Vmn2r47 - - 7|7 A1 vomeronasal 2, receptor 47 protein-coding 102637738 XR_383941 Gm34472 - - 15 B3.1|15 predicted gene, 34472 ncRNA 102638427 XR_383579 Gm34998 - - 14 D2|14 predicted gene, 34998 ncRNA 102635008 XR_388313 Gm25432 - - 19 A|19 predicted gene, 25432 pseudo 66587 Mm.28123 NM_023229 ENSMUSG00000028959 Fastk 0610011K02Rik|610011K02Rik - 5|5 A3 Fas-activated serine/threonine kinase protein-coding 75445 1700008B15Rik - - 4|4 A5 RIKEN cDNA 1700008B15 gene protein-coding 70762 Mm.44490 NM_027539 ENSMUSG00000028078 Dclk2 6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2 - 3|3 F1 doublecortin-like kinase 2 protein-coding 226830 Mm.156895 NM_026796 ENSMUSG00000026603 Smyd2 1110020E07Rik|4930402C15|KMT3C|Zmynd14 - 1|1 H6 SET and MYND domain containing 2 protein-coding 102640824 XR_390422 Gm36801 - - 4 A2|4 predicted gene, 36801 ncRNA 69004 Mm.439868 NR_045821 ENSMUSG00000085227 6330418K02Rik - - 5|5 G2 RIKEN cDNA 6330418K02 gene ncRNA 51828 D15Abb1e - - - DNA segment, Chr 15, Abbott 1 expressed unknown 320309 Mm.76803 NM_177132 ENSMUSG00000043747 1520401A03Rik - - 17|17 A3.3 RIKEN cDNA 1520401A03 gene protein-coding 100038462 Mm.491177 Gm10641 - - - predicted gene 10641 ncRNA 100036022 Abfm2 - - - abdominal fat mass 2 unknown 100861899 XM_011251037 ENSMUSG00000095032 Gm21310 - - Y A1|Y predicted gene, 21310 protein-coding 68014 Mm.335237 NM_026507 ENSMUSG00000032400 Zwilch 2310031L18Rik - 9|9 C zwilch kinetochore protein protein-coding 629970 NM_001114530 Cd300ld2 Gm11709 - 11|11 E2 CD300 molecule like family member D2 unknown 102631727 Gm29995 - - 2|2 predicted gene, 29995 ncRNA 329509 Mm.120738 NM_198630 ENSMUSG00000044145 1810024B03Rik - - 2|2 F1 RIKEN cDNA 1810024B03 gene protein-coding 100417224 Gm18463 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 102636178 XR_377548 Gm33318 - - 6 B1|6 predicted gene, 33318 ncRNA 102632238 Mm.352690 XR_001782004 Gm30371 - - 16 A1|16 predicted gene, 30371 ncRNA 27508 B545C9T - - - DNA segment, B545C9T unknown 12288 Mm.41628 NM_009781 ENSMUSG00000051331 Cacna1c Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC - 6 F1|6 55.86 cM calcium channel, voltage-dependent, L type, alpha 1C subunit protein-coding 102633771 XR_387944 ENSMUSG00000110447 Gm31518 Gm45851 - 8 C5|8 predicted gene, 31518 ncRNA 434189 Gm5596 EG434189 - 7|7 B5 DEP domain containing 1a pseudogene pseudo 11426 Mm.402299 NM_009600 ENSMUSG00000028649 Macf1 ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465 - 4 D2.2|4 57.42 cM microtubule-actin crosslinking factor 1 protein-coding 111297 Hmgn1-rs1 Hmg14-rs1 - - high mobility group nulceosomal binding domain 1, related sequence 1 pseudo 214253 Mm.52111 NM_175443 ENSMUSG00000070644 Etnk2 4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1 - 1|1 E4 ethanolamine kinase 2 protein-coding 62942 D11Mit321 - - 11 45.92 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 321 unknown 62489 D10Mit121 - - 10 63.17 cM DNA segment, Chr 10, Massachusetts Institute of Technology 121 unknown 70274 Mm.250491 NM_027366 ENSMUSG00000013766 Ly6g6e 2310011I02Rik|G6e - 17|17 B1 lymphocyte antigen 6 complex, locus G6E protein-coding 105244353 XR_866926 Gm39979 - - 2 H3|2 predicted gene, 39979 ncRNA 319814 Mm.438111 E130106K03Rik - - 11|11 RIKEN cDNA E130106K03 gene protein-coding 622481 Gm15784 EG622481|Gm1838 - 6 G3|6 nucleus accumbens associated 1, BEN and BTB (POZ) domain containing pseudogene pseudo 100049562 Mm.441620 Gm10176 - - - predicted gene 10176 unknown 105244947 Mm.359054 Gm40469 - - 8|8 predicted gene, 40469 protein-coding 16423 Mm.31752 NM_010581 ENSMUSG00000055447 Cd47 9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp - 16|16 B5 CD47 antigen (Rh-related antigen, integrin-associated signal transducer) protein-coding 102636833 XR_384072 Gm33793 - - 15 B3.2|15 predicted gene, 33793 ncRNA 606736 Mm.387042 NR_015465 ENSMUSG00000097352 C920009B18Rik - - 10|10 A3 RIKEN cDNA C920009B18 gene ncRNA 19775 Mm.266215 NM_011273 ENSMUSG00000026469 Xpr1 Rmc-1|Rmc1|Sxv|Syg1|XR - 1 G3|1 66.49 cM xenotropic and polytropic retrovirus receptor 1 protein-coding 100526691 LOC100526691 - - 17 B1 olfactory receptor 96 pseudogene pseudo 109279986 LOC109279986 Mm717 - - VISTA enhancer mm717 biological-region 76281 Mm.371656 NM_029564 ENSMUSG00000040158 Tax1bp3 1300011C24Rik|TIP-1 - 11|11 B4 Tax1 (human T cell leukemia virus type I) binding protein 3 protein-coding 100504404 Mm.15680 NM_010381 H2-Ea-ps AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea - 17 B1|17 17.98 cM histocompatibility 2, class II antigen E alpha, pseudogene protein-coding 194744 Mm.336014 NM_001085497 ENSMUSG00000037636 Slc25a43 Gm8 - X|X A3.3 solute carrier family 25, member 43 protein-coding 65960 Mm.10153 NM_023053 ENSMUSG00000024098 Twsg1 1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg - 17 E1.1|17 35.26 cM twisted gastrulation BMP signaling modulator 1 protein-coding 402743 Mm.126961 C130063K03Rik - - 2|2 RIKEN cDNA C130063K03 gene protein-coding 80892 Mm.41522 NM_030708 ENSMUSG00000025255 Zfhx4 A930021B15|C130041O22Rik|Zfh-4|Zfh4 - 3|3 A1 zinc finger homeodomain 4 protein-coding 102103 Mm.149438 NM_001005863 ENSMUSG00000045636 Mtus1 AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288 - 8|8 A4 mitochondrial tumor suppressor 1 protein-coding 102633659 XR_384768 Gm31430 - - 16 B1|16 predicted gene, 31430 ncRNA 108167394 LOC108167394 - - - Ig heavy chain V region 5-84-like other 100039979 Rps18-ps1 Gm11230 - 4|4 C2 ribosomal protein S18, pseudogene 1 pseudo 100418414 Gm19195 - - 12|12 F1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4 pseudogene pseudo 102638529 Gm28454 - - Y|Y predicted gene 28454 ncRNA 66181 Mm.272346 NM_025403 ENSMUSG00000027133 Nop10 1110036B12Rik|NOP10P|Nola3 - 2|2 E3 NOP10 ribonucleoprotein protein-coding 654360 Gm13360 EG654360 - 2|2 A3 voltage-dependent anion channel 1 pseudogene pseudo 545344 Gm5832 EG545344 - 1|1 D karyopherin (importin) alpha 2 pseudogene pseudo 97976 C81268 - - - expressed sequence C81268 unknown 105247245 XR_881937 Gm42376 - - 7 B1|7 predicted gene, 42376 ncRNA 77207 8030425K09Rik - - 7|7 RIKEN cDNA 8030425K09 gene protein-coding 102637759 XR_381257 Gm34489 - - 12 A1.1|12 predicted gene, 34489 ncRNA 13732 Mm.20829 NM_010129 ENSMUSG00000040212 Emp3 H-4|H4|HNMP-1|MI-35|Ymp - 7 B3|7 29.6 cM epithelial membrane protein 3 protein-coding 229389 Mm.331071 NM_001018031 ENSMUSG00000027788 Otol1 Gm414 - 3|3 E2 otolin 1 protein-coding 27782 92N10F - - - DNA segment, 92N10F (Research Genetics) unknown 71726 Mm.254820 NM_027885 ENSMUSG00000036061 Smug1 1200013B09Rik|A930006H09Rik|C85220 - 15|15 F3 single-strand selective monofunctional uracil DNA glycosylase protein-coding 102632214 Gm30353 - - Y|Y predicted gene, 30353 ncRNA 96996 C80276 - - - expressed sequence C80276 unknown 100041099 Mm.426631 NR_152191 Gm3137 - - 10 C1|10 predicted gene, 3137 ncRNA 93902 D16Jhu37 573G21.SP6 - - DNA segment, Chr 16, Johns Hopkins University 37 unknown 110990 Rnu1-ps2 Rnu1-3 - - U1 small nuclear RNA pseudogene 2 pseudo 218138 Mm.247143 NM_146041 ENSMUSG00000038372 Gmds BC031788|C87208 - 13|13 A3.2 GDP-mannose 4, 6-dehydratase protein-coding 102634476 XR_378954 ENSMUSG00000110624 Gm32052 Gm45773 - 8 B1.1|8 predicted gene, 32052 ncRNA 102631545 Mm.127605 XR_373735 Gm29856 - - 1 H4|1 predicted gene, 29856 ncRNA 106707 Mm.24603 NM_028009 ENSMUSG00000041199 Rpusd1 2310051D06Rik|AU019540|Rlucl - 17|17 A3.3 RNA pseudouridylate synthase domain containing 1 protein-coding 100036270 Mhstq1 - - 17 14.59 cM male hybrid sterility QTL 1 unknown 100036478 Pcir3 - - 15 29.03 cM periosteal circumference 3 unknown 61248 D2Mit109 - - 2 71.17 cM DNA segment, Chr 2, Massachusetts Institute of Technology 109 unknown 72124 Mm.307315 NM_028112 ENSMUSG00000079614 Seh1l 2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1 - 18|18 E1 SEH1-like (S. cerevisiae protein-coding 665245 Gm12944 - - 4|4 D2.2 predicted gene 12944 pseudo 102467636 n-TAcgc6 n-Ta25 - X F1|X nuclear encoded tRNA alanine 6 (anticodon CGC) tRNA 194642 Slc39a1-ps Slc39a1p - 2|2 B solute carrier family 39 (zinc transporter), member 1, pseudogene pseudo 493102 Fdpref - - 8 76.09 cM food preference unknown 100861969 XM_006542759 ENSMUSG00000095456 LOC100861969 - - - interleukin-11 receptor subunit alpha-2-like protein-coding 100042964 Mm.484995 NM_001167158 ENSMUSG00000095745 Gm4133 Vmn1r98 - 7 A3|7 predicted gene 4133 protein-coding 545363 Mm.362817 NR_040304 ENSMUSG00000100459 Gm5833 - - 1 E4|1 predicted gene 5833 ncRNA 19489 Rb(15.17)64Lub Rb64Lub - - Robertsonian translocation, Chr 15 and 17, Lubeck 64 other 102638291 Gm34890 - - 10|10 predicted gene, 34890 protein-coding 102465698 NR_106071 ENSMUSG00000098719 Mir7212 Gm28027|mmu-mir-7212 - 15|15 B1 microRNA 7212 ncRNA 68556 Mm.232400 NM_026765 ENSMUSG00000089917 Uckl1 1110007H10Rik|Urkl1 - 2|2 H4 uridine-cytidine kinase 1-like 1 protein-coding 257951 Mm.389304 NM_001011785 ENSMUSG00000075223 Olfr987 GA_x5J8B7TRSBM-251-3|GA_x5J8B7W531T-1241080-1240524|MOR203-7P - 2|2 D olfactory receptor 987 protein-coding 101454 AA516940 - - - expressed sequence AA516940 unknown 56317 Mm.37341 NM_019805 ENSMUSG00000029466 Anapc7 APC7|AW545589 - 5|5 F anaphase promoting complex subunit 7 protein-coding 100035770 Pbwg7 - - X 30.84 cM postnatal body weight growth 7 unknown 75123 Mm.72666 NR_131020 ENSMUSG00000110310 4930518J21Rik - - 8|8 B2 RIKEN cDNA 4930518J21 gene ncRNA 102639474 XR_386266 Gm35778 - - 18 E1|18 predicted gene, 35778 ncRNA 666924 Gm8367 EG666924 - 1|1 C1.1 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 pseudogene pseudo 102634905 XR_377778 Gm32378 - - 6 C3|6 predicted gene, 32378 ncRNA 623380 Vmn2r-ps1 Feb06V2Rchr1-196.992|Gm6424 - 1|1 H6 vomeronasal 2, receptor, pseudogene 1 pseudo 258440 Mm.377503 NM_146448 ENSMUSG00000050776 Olfr1317 MOR245-4 - 2|2 E3 olfactory receptor 1317 protein-coding 668790 Gm13915 - - 2|2 E3 eukaryotic translation initiation factor 2, subunit 1 alpha pseudogene pseudo 102638362 XR_380019 Gm34945 - - 9 F4|9 predicted gene, 34945 ncRNA 638904 Mgam2-ps EG638904|Gm7254 - 6|6 B1 maltase-glucoamylase 2, pseudogene pseudo 109542 Rn Fkl - - roan unknown 105242558 XR_868671 Gm38736 - - 5 G2|5 predicted gene, 38736 ncRNA 105244842 LOC105244842 - - 6 C1 60S ribosomal protein L37 pseudogene pseudo 383440 Rpl29-ps6 Gm5245 - 19|19 B ribosomal protein L29, pseudogene 6 pseudo 102634107 XR_376632 Gm31769 - - 4 D2.2|4 predicted gene, 31769 ncRNA 105245086 Gm40585 - - 9|9 predicted gene, 40585 ncRNA 263803 Mm.233843 NM_153805 ENSMUSG00000026785 Pkn3 AW209115|BC034126 - 2|2 B protein kinase N3 protein-coding 68606 Mm.230296 NM_176833 ENSMUSG00000026181 Ppm1f 1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015 - 16|16 A3 protein phosphatase 1F (PP2C domain containing) protein-coding 102639924 XR_876839 Gm36122 - - 17 C|17 predicted gene, 36122 ncRNA 192103 Stheal6 - - 7 55.69 cM soft tissue heal 6 unknown 105245286 XR_872035 Gm40762 - - 10 D1|10 predicted gene, 40762 ncRNA 105246695 Gm41942 - - 1|1 predicted gene, 41942 ncRNA 108167624 XR_001778913 LOC108167624 - - 1 C1.1 uncharacterized LOC108167624 ncRNA 62773 D16Mit155 - - 16 53.37 cM DNA segment, Chr 16, Massachusetts Institute of Technology 155 unknown 108635 Igk-Vt - - - immunoglobulin kappa chain complex variable region, transposed other 111223 Tpi-rs11 - - 6 F3|6 61.95 cM triosephosphate isomerase related sequence 11 pseudo 17910 Mm.89960 NM_010862 ENSMUSG00000042678 Myo15 Myo15a|sh-2|sh2 - 11 B2|11 37.81 cM myosin XV protein-coding 105244728 XR_868359 Gm40286 - - 5 B3|5 predicted gene, 40286 ncRNA 102238523 LOC102238523 - - 11 D polymerase (RNA) II (DNA directed) polypeptide K pseudogene pseudo 12140 Mm.3644 NM_021272 ENSMUSG00000019874 Fabp7 B-FABP|BFABP|Blbp|MRG - 10|10 B4 fatty acid binding protein 7, brain protein-coding 111830 Iapls2-28 - - - intracisternal A particle, lymphocyte specific 2-28 other 237400 Mm.268389 NM_198615 ENSMUSG00000048696 Mex3d BC059858|Rkhd1 - 10|10 C1 mex3 RNA binding family member D protein-coding 111186 Mm.484753 NR_029430 Stmn1-rs1 Lag-rs1|Lap18-rs1 - 9 F3|9 67.74 cM stathmin 1, related sequence 1 pseudo 102635509 XR_380688 Gm32827 - - 10 C2|10 predicted gene, 32827 ncRNA 16261 In(17)4t In4 - - inversion, Chr 17 other 97065 C78441 - - - expressed sequence C78441 unknown 12372 Mm.12829 NM_009813 ENSMUSG00000007122 Casq1 CSQ|CSQ-1|CSQ1|sCSQ - 1 H3|1 79.54 cM calsequestrin 1 protein-coding 105244534 XR_867573 Gm40127 - - 3 G1|3 predicted gene, 40127 ncRNA 62245 D17Mit89 - - 17 32.82 cM DNA segment, Chr 17, Massachusetts Institute of Technology 89 unknown 111415 Mtv13 Mls|Mls-2|Mls2|Mtv-13 - - mammary tumor virus locus 13 other 258375 Mm.391446 NM_146378 ENSMUSG00000044293 Olfr794 MOR114-11 - 10|10 D3 olfactory receptor 794 protein-coding 791407 Mm.139928 Gm10032 - - 14 D1|14 predicted gene 10032 ncRNA 98819 Mm.441712 AA617406 - - - expressed sequence AA617406 protein-coding 105247117 Gm42275 - - 4 A5|4 Fam205 pseudogene pseudo 61941 D6Mit310 - - 6 14.75 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 310 unknown 105246679 XR_878433 Gm37053 - - 1 E2.1|1 predicted gene, 37053 ncRNA 13163 Mm.271809 NM_007829 ENSMUSG00000002307 Daxx - - 17 B1|17 17.98 cM Fas death domain-associated protein protein-coding 100035646 Bodw2 - - - body weight 2 unknown 110590 Tcra-V10.1 - - - T cell receptor alpha, variable 10.1 other 102636012 XR_384415 Gm33205 - - 15 F1|15 predicted gene, 33205 ncRNA 105244661 Gm40230 - - 4|4 predicted gene, 40230 ncRNA 105243352 XR_870559 Gm39299 - - 9 A3|9 predicted gene, 39299 ncRNA 633057 Mm.426097 NM_001177513 ENSMUSG00000094649 Gm7102 EG633057 - 19|19 D3 predicted gene 7102 protein-coding 402726 Mm.131398 A630028G03Rik - - 11|11 RIKEN cDNA A630028G03 gene protein-coding 30053 Mm.33691 NM_013893 ENSMUSG00000068341 Reg3d INGAP|Ingaprp - 6|6 C3 regenerating islet-derived 3 delta protein-coding 102635439 LOC102635439 - - 13 A3.1 sperm motility kinase X-like pseudo 102639741 Mm.381223 XR_374964 Gm14009 - - 2 F1|2 62.31 cM predicted gene 14009 ncRNA 104445 Mm.307488 NM_027219 ENSMUSG00000049521 Cdc42ep1 1810058K22Rik|AA980734|Borg5|CEP1|MSE55 - 15|15 E1 CDC42 effector protein (Rho GTPase binding) 1 protein-coding 101490 Mm.490344 NM_178641 ENSMUSG00000042105 Inpp5f 5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966 - 7|7 F3 inositol polyphosphate-5-phosphatase F protein-coding 22326 Mm.23801 NM_009501 ENSMUSG00000006270 Vax1 - - 19 D3|19 54.61 cM ventral anterior homeobox 1 protein-coding 72789 Mm.443526 NM_028357 ENSMUSG00000027831 Veph1 2810471M23Rik|Veph - 3|3 E1 ventricular zone expressed PH domain-containing 1 protein-coding 105244028 XR_865785 Gm39715 - - 1 H4|1 predicted gene, 39715 ncRNA 72987 Mm.443542 2900057C01Rik - - 8|8 RIKEN cDNA 2900057C01 gene protein-coding 105244657 XR_868019 LOC105244657 - - 4 D1 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 18567 Mm.323 NM_008799 ENSMUSG00000014771 Pdcd2 AI528543|Pcd2|RP-8 - 17 A2|17 8.95 cM programmed cell death 2 protein-coding 99413 AW555355 - - - expressed sequence AW555355 protein-coding 100041926 Gm15393 - - 1|1 E2.3 predicted gene 15393 protein-coding 105243391 XR_870692 Gm39326 - - 9 A5.2|9 predicted gene, 39326 ncRNA 75389 Mm.261421 NR_126460 ENSMUSG00000086501 4930597A21Rik - - 11|11 B1.1 RIKEN cDNA 4930597A21 gene ncRNA 100417805 Gm18838 - - 6|6 B3 protein phosphatase 6, catalytic subunit pseudogene pseudo 50772 Mm.480076 NM_015806 ENSMUSG00000042688 Mapk6 2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6 - 9 D|9 42.3 cM mitogen-activated protein kinase 6 protein-coding 67843 Mm.273350 NM_026404 ENSMUSG00000033272 Slc35a4 2610030J16Rik - 18|18 B2 solute carrier family 35, member A4 protein-coding 14252 Mm.130227 NM_008028 ENSMUSG00000061981 Flot2 AI573412|Esa|reggie-2 - 11 B5|11 46.74 cM flotillin 2 protein-coding 252838 Mm.435828 NM_145711 ENSMUSG00000041272 Tox 1700007F02Rik - 4|4 A1 thymocyte selection-associated high mobility group box protein-coding 14760 Mm.4787 NM_008157 ENSMUSG00000032641 Gpr19 - - 6|6 G1 G protein-coupled receptor 19 protein-coding 93936 D16Jhu76 454K24.T7 - - DNA segment, Chr 16, Johns Hopkins University 76 unknown 625457 Gm6587 EG625457 - 2|2 A2 Hmgb1 pseudogene pseudo 100042411 Mm.244431 Gm3831 - - 4 C5|4 predicted gene 3831 protein-coding 56874 Mm.87352 NM_021470 ENSMUSG00000029130 Rnf32 1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2 - 5 B1|5 14.78 cM ring finger protein 32 protein-coding 105243959 XR_865564 Gm39665 - - 1 C4|1 predicted gene, 39665 ncRNA 111627 Tcra-V12 - - - T cell receptor alpha, variable 12 other 434807 Gm5641 EG434807 - 3|3 C heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 102638781 Gm35263 - - 17|17 predicted gene, 35263 ncRNA 665472 Rpl19-ps2 EG665472|Gm7649 - 10 B5.3|10 ribosomal protein L19, pseudogene 2 pseudo 102638482 XR_872000 Gm35035 - - 10 D1|10 predicted gene, 35035 ncRNA 625476 Gm6591 EG625476 - X|X A5 predicted gene 6591 pseudo 625321 Mm.367236 NM_001037924 ENSMUSG00000073929 Trim30e-ps1 EG625321|Gm6577|Trim30-4 - 7 E3|7 tripartite motif-containing 30E, pseudogene 1 pseudo 102635262 XR_869797 Gm32647 Gm44905 - 7 E1|7 predicted gene, 32647 ncRNA 215798 Mm.440142 NM_001002268 ENSMUSG00000039116 Adgrg6 1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126 - 10|10 A2 adhesion G protein-coupled receptor G6 protein-coding 338365 Mm.67073 NM_177388 ENSMUSG00000034591 Slc41a2 A230035L05Rik|SLC41A1-L1 - 10|10 C1 solute carrier family 41, member 2 protein-coding 100034251 Mm.24097 NM_001081957 ENSMUSG00000069792 Wfdc17 Amwap|Gm11428 - 11 C|11 WAP four-disulfide core domain 17 protein-coding 668787 Gm9360 EG668787 - 17|17 E2 lactate dehydrogenase A pseudogene pseudo 27738 245A8.T7 - - - DNA segment, 245A8.T7 (Roswell Park) unknown 60818 D4Mit59 - - 4 86.17 cM DNA segment, Chr 4, Massachusetts Institute of Technology 59 unknown 100042793 Mm.443366 Gm15234 - - 3|3 F2.1 predicted gene 15234 unknown 112301 Tlsr3 - - - thymic lymphoma suppressor region 3 unknown 97487 Mm.29658 NM_153582 ENSMUSG00000096188 Cmtm4 Cklfsf4|D19397|Gm9853 - 8|8 D3 CKLF-like MARVEL transmembrane domain containing 4 protein-coding 435787 Rpl17-ps4 EG435787|Gm11215|Rpl17-ps|bN312B5.2 - 4|4 C1 ribosomal protein L17, pseudogene 4 pseudo 114534 Pgia17 - - - proteoglycan induced arthritis 17 unknown 102635735 XR_379062 Gm32997 - - 8 B3.3|8 predicted gene, 32997 ncRNA 108168509 XM_017318701 ENSMUSG00000101933 LOC108168509 - - Y B X-linked lymphocyte-regulated protein PM1-like protein-coding 12326 Mm.222329 NM_009793 ENSMUSG00000038128 Camk4 A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e - 18 B1|18 18.15 cM calcium/calmodulin-dependent protein kinase IV protein-coding 258644 Mm.451640 NM_146650 ENSMUSG00000101078 Olfr1166 MOR174-6 - 2|2 D olfactory receptor 1166 protein-coding 107292 AU021789 - - - expressed sequence AU021789 unknown 110166 Tpe1 Mtp-1|Mtp1 - - tear protein electrophoretic 1 protein-coding 62046 D9Mit357 - - 9 54.49 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 357 unknown 75950 4930594A02Rik - - - RIKEN cDNA 4930594A02 gene protein-coding 108167932 XR_001780347 Gm46297 - - 11 E1|11 predicted gene, 46297 ncRNA 107056 Mm.458279 AW742475 - - - expressed sequence AW742475 unknown 68774 Mm.290390 NM_026835 ENSMUSG00000024679 Ms4a6d 1110058E16Rik|AI447446|Ms4a11 - 19|19 A membrane-spanning 4-domains, subfamily A, member 6D protein-coding 100039317 Mm.233168 Gm2155 - - X A5|X predicted gene 2155 protein-coding 111515 Pmv3 Pmv-3 - - polytropic murine leukemia virus 3 other 100416787 Gm18250 - - 10|10 predicted gene, 18250 pseudo 102632125 Gm30279 - - 15|15 predicted gene, 30279 ncRNA 102633642 Gm28337 - - Y|Y predicted gene 28337 protein-coding 100503000 XR_001784310 Zfp993 Gm13248 - 4 E1|4 78.28 cM zinc finger protein 993 ncRNA 228812 Mm.5434 NM_001004721 ENSMUSG00000038383 Pigu 5430426F17Rik|BC028278|Cdc91l1 - 2|2 H1 phosphatidylinositol glycan anchor biosynthesis, class U protein-coding 105246017 XR_875571 Gm41381 - - 15 E3|15 predicted gene, 41381 ncRNA 72726 Mm.33780 NM_178385 ENSMUSG00000036430 Tbcc 2810055C19Rik - 17|17 C tubulin-specific chaperone C protein-coding 110097 Rasl2-4 - - - RAS-like, family 2, locus 4 protein-coding 51949 D19Bir8e - - - DNA segment, Chr 19, Birkenmeier 8, expressed unknown 62872 D11Mit271 - - 11 27.44 cM DNA segment, Chr 11, Massachusetts Institute of Technology 271 unknown 320106 Mm.227703 NM_177074 ENSMUSG00000061171 Slc38a11 9330158F14Rik - 2|2 C1.3 solute carrier family 38, member 11 protein-coding 59091 Mm.34459 NM_021566 ENSMUSG00000017817 Jph2 1110002E14Rik|JP-2|Jp2 - 2|2 H2-H3 junctophilin 2 protein-coding 62580 D12Mit167 - - 12 55.11 cM DNA segment, Chr 12, Massachusetts Institute of Technology 167 unknown 100416161 Gm17948 - - 17|17 B1 ets variant gene 5 pseudogene pseudo 12908 Mm.20396 NM_007760 ENSMUSG00000026853 Crat AW107812|CARAT - 2 B|2 21.69 cM carnitine acetyltransferase protein-coding 433202 XR_386338 Gm9925 - - 18 E2|18 predicted gene 9925 ncRNA 16572 Mm.30355 NM_008447 ENSMUSG00000074657 Kif5a D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086 - 10 D3|10 74.5 cM kinesin family member 5A protein-coding 108169095 Gm43028 - - 5 C3.1|5 60S ribosomal protein L21 pseudogene pseudo 108168839 XR_001783629 Gm46789 - - 2 E5|2 predicted gene, 46789 ncRNA 385346 Gm5386 EG385346 - X|X A4 thyroid hormone receptor associated protein 3 pseudogene pseudo 105602 AU022240 - - - expressed sequence AU022240 unknown 108169206 n-TVcac5 Trnav-cac|n-Tv13 - 6 A1|6 nuclear encoded tRNA valine 5 (anticodon CAC) tRNA 114729 Skull21 E14|L14|QTL-S14.1 - 14 31.49 cM skull morphology 21 unknown 72569 Mm.252136 NM_028284 ENSMUSG00000063145 Bbs5 1700049I01Rik|2700023J09Rik - 2|2 C2 Bardet-Biedl syndrome 5 (human) protein-coding 75277 Mm.391012 4930556A20Rik - - 17|17 C RIKEN cDNA 4930556A20 gene ncRNA 105243246 XR_879073 Gm39219 - - 8 C4|8 predicted gene, 39219 ncRNA 102640383 Gm36454 - - 16|16 predicted gene, 36454 ncRNA 21974 Mm.130362 NM_009409 ENSMUSG00000017485 Top2b D230016L12Rik|Top-2 - 14|14 A2 topoisomerase (DNA) II beta protein-coding 111439 Emv44 Emv-44 - - endogenous ecotropic MuLV 44 other 100416151 Gm12102 - - 11|11 A4 GPN-loop GTPase 1 pseudogene pseudo 16795 Mm.324371 NM_010687 ENSMUSG00000004383 Large1 BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd - 8 B3.3|8 35.08 cM LARGE xylosyl- and glucuronyltransferase 1 protein-coding 51868 D2Ertd168e - - - DNA segment, Chr 2, ERATO Doi 168, expressed unknown 94218 Mm.256323 NM_053186 ENSMUSG00000001138 Cnnm3 Acdp3|Clp3|mACDP3 - 1 B|1 15.3 cM cyclin M3 protein-coding 102638142 XR_871999 Gm34777 - - 10 D1|10 predicted gene, 34777 ncRNA 11746 Mm.259702 NM_013471 ENSMUSG00000029994 Anxa4 AI265406|AIV|AW106930|Anx4|Xanx-4 - 6 D1|6 37.75 cM annexin A4 protein-coding 52475 D13Ertd42e - - 13 21.69 cM DNA segment, Chr 13, ERATO Doi 42, expressed unknown 108760 Mm.308296 NM_134045 ENSMUSG00000021130 Galnt16 5730405L21Rik|AI415388|Galntl1|galNAc-T16|mpp-GalNAc-T16 - 12|12 C3 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 100043951 Gm4730 - - X|X A1.2 predicted gene 4730 pseudo 12945 Mm.4138 NM_007769 ENSMUSG00000047517 Dmbt1 CRP|CRP-[a]|CRP-[b]|Crpd|DBMT1|gp300|p80 - 7|7 F3 deleted in malignant brain tumors 1 protein-coding 19383 Mm.221440 NM_023130 ENSMUSG00000027593 Raly AI663842|Merc - 2 H1|2 76.83 cM hnRNP-associated with lethal yellow protein-coding 230883 Mm.457844 NM_001085503 ENSMUSG00000078507 Aadacl3 Gm435 - 4|4 E1 arylacetamide deacetylase like 3 protein-coding 399637 C130079B09Rik - - - RIKEN cDNA C130079B09 gene protein-coding 21070 T(11;19)42H T42H - - reciprocal translocation, Chr 11 and 19, Harwell 42 other 102632380 Gm30469 - - 7|7 predicted gene, 30469 ncRNA 105245669 XR_874137 Gm41090 - - 14 A1|14 predicted gene, 41090 ncRNA 267019 Mm.288212 NM_170669 ENSMUSG00000008683 Rps15a A630031B11Rik - 7|7 F1 ribosomal protein S15A protein-coding 102638046 Gm34707 - - 5|5 predicted gene, 34707 ncRNA 230866 Mm.394288 NM_146157 ENSMUSG00000078517 Emc1 2700016F22Rik - 4|4 D3 ER membrane protein complex subunit 1 protein-coding 622894 Mm.380053 NR_044992 ENSMUSG00000096742 Gm6367 EG622894 - 5|5 E3 predicted gene 6367 pseudo 105245984 XR_875443 Gm41352 - - 15 D3|15 predicted gene, 41352 ncRNA 15587 Mm.4834 NM_010489 ENSMUSG00000010047 Hyal2 AI256841|AU020858|AW555733 - 9 F1|9 58.12 cM hyaluronoglucosaminidase 2 protein-coding 102637651 Gm28753 - - Y|Y predicted gene 28753 ncRNA 113853 Mm.434332 NM_053226 ENSMUSG00000057697 Vmn1r53 V1rb3|VN5 - 6|6 D1 vomeronasal 1 receptor 53 protein-coding 105245460 LOC105245460 - - 13 A3.3 ATP synthase subunit g, mitochondrial pseudogene pseudo 105245709 Gm41117 - - 14|14 predicted gene, 41117 ncRNA 61736 D4Mit286 - - 4 23.0 cM DNA segment, Chr 4, Massachusetts Institute of Technology 286 unknown 66371 Mm.366147 NM_025519 ENSMUSG00000027536 Chmp4c 2010012P02Rik|2210015K02Rik|2310010I16Rik|Shax3|Snf7-3 - 3|3 A1 charged multivesicular body protein 4C protein-coding 16867 Mm.1644 NM_013582 ENSMUSG00000024107 Lhcgr Gpcr19-rs1|LH-R|Lhr - 17 E4|17 58.35 cM luteinizing hormone/choriogonadotropin receptor protein-coding 100042258 Gm3752 - - 14 A1|14 predicted gene 3752 pseudo 382620 Mm.374912 NM_001033475 ENSMUSG00000034111 Tmed8 6430595O10Rik|AI447224|Gm1184|Mem1 - 12|12 D2 transmembrane p24 trafficking protein 8 protein-coding 102636689 XR_384427 Gm33690 - - 15 F1|15 predicted gene, 33690 ncRNA 102632889 Astx4c Gm14955 - X|X 49.81 cM amplified spermatogenic transcripts X encoded 4C protein-coding 61539 D9Mit117 - - 9 68.04 cM DNA segment, Chr 9, Massachusetts Institute of Technology 117 unknown 108168179 XR_001781397 Gm46469 - - 14 A1|14 predicted gene, 46469 ncRNA 105246438 XR_877409 Gm41728 - - 18 D1|18 predicted gene, 41728 ncRNA 112112 Bgeq1 - - 1 67.71 cM body growth early QTL 1 unknown 102639049 XR_385836 Gm35457 - - 17 E4|17 predicted gene, 35457 ncRNA 192191 Mm.125288 NM_138675 ENSMUSG00000061650 Med9 BC019367|Med25 - 11|11 B1.3 mediator complex subunit 9 protein-coding 76939 2510042H12Rik - - - RIKEN cDNA 2510042H12 gene protein-coding 259007 Mm.425696 NM_147005 ENSMUSG00000062186 Olfr395 MOR135-10 - 11|11 B4 olfactory receptor 395 protein-coding 230779 Mm.45132 NM_172702 ENSMUSG00000023232 Serinc2 2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l - 4|4 D2.2 serine incorporator 2 protein-coding 68054 Mm.20286 NM_026535 ENSMUSG00000041567 Serpina12 4632419J12Rik - 12|12 E serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12 protein-coding 85232 D16Mit221 - - 16 33.65 cM DNA Segment, Chr 16, Massachusetts Institute of Technology 221 unknown 320863 Mm.207552 A630083H20Rik - - 1|1 RIKEN cDNA A630083H20 gene protein-coding 232237 Mm.295740 NM_172731 ENSMUSG00000034037 Fgd5 C330025N11Rik|ZFYVE23|mFLJ00274 - 6|6 D1 FYVE, RhoGEF and PH domain containing 5 protein-coding 545867 Gm5881 - - 6 D3|6 calmodulin 2 pseudogene pseudo 100504259 Gm20136 - - 18 B1|18 18.04 cM developmental pluripotency-associated protein 2-like pseudo 100035188 Htas9 - - - hypothermia due to alcohol sensitivity 9 unknown 102633500 Gm31311 - - 5|5 predicted gene, 31311 ncRNA 102633044 XR_387006 Gm14808 - - X C3|X 43.37 cM predicted gene 14808 ncRNA 105246271 XR_876779 LOC105246271 - - 17 B1 uncharacterized LOC105246271 ncRNA 73141 3110031N09Rik - - 5|5 RIKEN cDNA 3110031N09 gene protein-coding 75340 Mm.108491 4930554G22Rik - - 3|3 RIKEN cDNA 4930554G22 gene protein-coding 100040007 Gm2551 - - 7|7 E1 predicted gene 2551 pseudo 62660 D15Mit109 - - 15 8.23 cM DNA segment, Chr 15, Massachusetts Institute of Technology 109 unknown 105246898 Gm42099 - - X|X predicted gene, 42099 ncRNA 62494 D10Mit137 - - 10 16.84 cM DNA segment, Chr 10, Massachusetts Institute of Technology 137 unknown 449562 NR_046302 ENSMUSG00000088294 AF357425 MBII-48 - 12 F1|12 60.5 cM snoRNA AF357425 snoRNA 70349 Mm.277024 NM_033370 ENSMUSG00000030754 Copb1 2610019B04Rik - 7 F1|7 59.31 cM coatomer protein complex, subunit beta 1 protein-coding 111145 Zfp73-rs2 - - - zinc finger protein 73, related sequence 2 pseudo 102641529 Mm.415555 XR_868471 Gm38562 Gm43477 - 5 C3.2|5 predicted gene, 38562 ncRNA 108164 Klk1b23-ps Gk23|Klk-ps9|Klk1b23|mGk-23 - 7 B3|7 28.63 cM kallikrein 1-related peptidase b23, pseudogene pseudo 112352 Nq1 Pnef - - non-esterified fatty acids QTL 1 unknown 52505 D13Ertd463e - - - DNA segment, Chr 13, ERATO Doi 463, expressed unknown 108168198 XR_001781424 Gm46482 - - 14 D1|14 predicted gene, 46482 ncRNA 105242760 Gm38890 - - 6|6 predicted gene, 38890 ncRNA 105245561 XR_873674 Gm41004 - - 13 C1|13 predicted gene, 41004 ncRNA 102637479 Gm34277 - - 1|1 predicted gene, 34277 ncRNA 433623 Gm5541 EG433623 - 3|3 F2.1 TD and POZ domain containing 4 pseudogene pseudo 105243537 XR_871276 Gm39429 - - 9 F2|9 predicted gene, 39429 ncRNA 19600 Rb(6.19)2Icg Rb2Icg - - Robertsonian translocation, Chr 6 and 19, Inst of Cytology and Genetics Novosibirsk 2 other 70153 Mm.296610 NM_027335 ENSMUSG00000021550 2210016F16Rik - - 13|13 B1 RIKEN cDNA 2210016F16 gene protein-coding 69904 Mm.158306 XR_387323 2610027F03Rik - - 1|1 E2.3 RIKEN cDNA 2610027F03 gene unknown 105245215 XR_871838 Gm40699 - - 10 C1|10 predicted gene, 40699 ncRNA 102639723 XR_001781402 Gm35966 - - 14 D3|14 predicted gene, 35966 ncRNA 233552 Mm.286317 NM_201352 ENSMUSG00000035314 Gdpd5 BC024955|Gde2 - 7|7 E1 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 114579 Myaa2 - - 17 22.9 cM modifier of Yaa 2 unknown 493059 Heal11 - - 16 3.43 cM wound healing/regeneration 11 unknown 326622 Mm.31102 NM_001081132 ENSMUSG00000043241 Upf2 - - 2|2 A1 UPF2 regulator of nonsense transcripts homolog (yeast) protein-coding 19419 Mm.42150 NM_011246 ENSMUSG00000027347 Rasgrp1 Rasgrp|calDAG-GEFII - 2 E5|2 59.19 cM RAS guanyl releasing protein 1 protein-coding 674360 Vmn2r-ps89 - - 8|8 A1.1 vomeronasal 2, receptor, pseudogene 89 pseudo 79204 363K16-SP6 - - - DNA segment, 363K16-SP6 unknown 78218 Mm.452750 4930573I07Rik - - 5|5 RIKEN cDNA 4930573I07 gene protein-coding 105247155 XR_881382 Gm42306 - - 4 C3|4 predicted gene, 42306 ncRNA 72912 2900016D18Rik - - - RIKEN cDNA 2900016D18 gene protein-coding 319673 Mm.149040 NR_037982 ENSMUSG00000097177 9330159M07Rik 1700096K11Rik|mU50hg-a - 9|9 E3.1 RIKEN cDNA 9330159M07 gene ncRNA 382601 Gm5184 EG382601 - 12 C1|12 Mybbp1a pseudogene pseudo 100041786 Gm3511 - - 5 F|5 40S ribosomal protein S28 pseudogene pseudo 666928 Vmn1r-ps20 EG666928|Gm8370 - 6|6 B3 vomeronasal 1 receptor, pseudogene 20 pseudo 666660 XR_874570 Gm8220 EG666660 - 14|14 C1 predicted gene 8220 protein-coding 217371 Mm.281639 NM_139147 ENSMUSG00000025170 Rab40b SEC4L|rar - 11|11 E2 Rab40B, member RAS oncogene family protein-coding 624910 Mm.389199 NM_001290269 ENSMUSG00000098509 Rgs21 EG624910 - 1|1 F regulator of G-protein signalling 21 protein-coding 67133 Mm.46403 NM_025989 ENSMUSG00000030954 Gp2 2310037I18Rik|AV060639 - 7 F2|7 63.88 cM glycoprotein 2 (zymogen granule membrane) protein-coding 110856 Clns1a-rs1 Clci-rs1|Clcni-rs1 - - chloride channel, nucleotide-sensitive, 1A, related sequence 1 protein-coding 75083 Mm.389373 NM_029163 ENSMUSG00000027364 Usp50 1700086G18Rik|4930511O11Rik - 2|2 F1 ubiquitin specific peptidase 50 protein-coding 229722 Mm.316890 NM_001033304 ENSMUSG00000040412 5330417C22Rik BB183350 - 3|3 F3 RIKEN cDNA 5330417C22 gene protein-coding 102640524 Gm36564 - - 10|10 predicted gene, 36564 ncRNA 269693 Mm.10946 NM_177759 ENSMUSG00000043913 Ccdc60 AU018954|C130098D09 - 5|5 F coiled-coil domain containing 60 protein-coding 15553 Htr1da - - - 5-hydroxytryptamine (serotonin) receptor 1D alpha protein-coding 353499 Mm.360398 NM_181820 ENSMUSG00000019734 Tmc4 - - 7|7 A1 transmembrane channel-like gene family 4 protein-coding 74548 Mm.273185 NM_028992 ENSMUSG00000055748 Gsdmc4 9030605I04Rik - 15|15 D1 gasdermin C4 protein-coding 78903 Mm.286680 NM_030215 ENSMUSG00000021400 Wrnip1 4833444L21Rik|WHIP|Wrnip - 13|13 A3.2 Werner helicase interacting protein 1 protein-coding 100036314 Mord3 - - - modifier of retinal degeneration 3 unknown 104800 AI414330 - - - expressed sequence AI414330 unknown 108168161 LOC108168161 - - 14 C1 60S ribosomal protein L24 pseudogene pseudo 102640691 Gm28678 - - Y|Y predicted gene 28678 protein-coding 51987 D12Sut2e - - - DNA segment, Chr 12, Sutcliffe 2, expressed unknown 545646 Mm.380019 NM_001243155 ENSMUSG00000094271 Gm13290 - - 4 C4|4 predicted gene 13290 protein-coding 102640891 XR_378577 Gm36849 Gm45383 - 7 F3|7 predicted gene, 36849 ncRNA 382111 Mm.376140 NM_001101510 ENSMUSG00000086596 Susd5 Gm1126 - 9|9 F3 sushi domain containing 5 protein-coding 546488 NM_001305430 ENSMUSG00000111732 Olfr785 EG546488|Gm44444|MOR111-8P|Olfr785-ps1 - 10|10 D3 olfactory receptor 785 protein-coding 102639051 XR_386045 Gm35458 - - 18 A1|18 predicted gene, 35458 ncRNA 67201 Mm.482113 NM_026029 ENSMUSG00000017286 Glod4 1700082G03Rik|2700085E05Rik|C81254 - 11|11 B5 glyoxalase domain containing 4 protein-coding 100416779 Gm18246 - - 12|12 B1 zinc finger protein 511 pseudogene pseudo 223645 NM_001282443 ENSMUSG00000098678 Mroh6 Gm19570 - 15|15 D3 maestro heat-like repeat family member 6 protein-coding 19483 Rb(12.14)8Rma Rb8Rma - - Robertsonian translocation, Chr 12 and 14, Universita di Roma 8 other 110575 Tcra-V15.1 - - - T cell receptor alpha, variable 15.1 other 100035047 Obsty2 - - - obesity 2 unknown 56495 Mm.41475 NM_019652 ENSMUSG00000052456 Asna1 1810048H22Rik|ArsA - 8|8 C3 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) protein-coding 20308 Mm.416125 NM_011338 ENSMUSG00000019122 Ccl9 CCF18|MRP-2|Scya10|Scya9 - 11 C|11 50.81 cM chemokine (C-C motif) ligand 9 protein-coding 102641335 XR_867589 Gm38548 - - 3 G1|3 predicted gene, 38548 ncRNA 100384905 Gm20584 - - 8 A2|8 10.35 cM NSFL1 (p97) cofactor (p47) pseudogene pseudo 69932 Mm.484036 2810004I08Rik D10Wsu1e - 10|10 RIKEN cDNA 2810004I08 gene protein-coding 100637 Mm.279932 NM_133898 ENSMUSG00000041132 N4bp2l1 2410024N18Rik|AI428195|B230342M21Rik - 5|5 G3 NEDD4 binding protein 2-like 1 protein-coding 258773 Mm.451663 NM_146777 ENSMUSG00000058071 Olfr818 MOR110-2 - 10|10 D3 olfactory receptor 818 protein-coding 546143 Mm.260946 NM_001198789 ENSMUSG00000086158 Ccpg1os EG546143|Gm5918 - 9|9 D cell cycle progression 1, opposite strand protein-coding 116705 Lfp2 - - 19 29.79 cM long free running period 2 unknown 77639 C030041B07Rik - - 6|6 RIKEN cDNA C030041B07 gene protein-coding 105244625 XR_867942 Gm40206 - - 4 C5|4 predicted gene, 40206 ncRNA 53858 Mm.162406 NM_016924 ENSMUSG00000041079 Rwdd2b ORF5 - 16|16 C3.3 RWD domain containing 2B protein-coding 116450 Etia - - 16 45.89 cM ethanol induced activation unknown 208426 Mm.246568 NM_177585 ENSMUSG00000051777 Iqcj D230050A05|EG208426 - 3 E1|3 IQ motif containing J protein-coding 19231 Mm.19187 NM_008972 ENSMUSG00000026238 Ptma Thym - 1|1 C5 prothymosin alpha protein-coding 105247270 XR_882249 Gm42398 - - 7 D2|7 predicted gene, 42398 ncRNA 330660 Mm.271550 NM_001081038 ENSMUSG00000040298 Btbd16 E330040A16Rik - 7|7 F3 BTB (POZ) domain containing 16 protein-coding 21006 T(1;13)70H T70H - - reciprocal translocation, Chr 1 and 13, Harwell 70 other 100416228 Gm17984 - - 7|7 B5 predicted gene, 17984 pseudo 77552 Mm.41407 NM_175259 ENSMUSG00000041889 Shisa4 9330132O05Rik|Tmem58|mShisa4 - 1|1 E4 shisa family member 4 protein-coding 100503105 Gm13325 - - 2 A3|2 12.32 cM developmental pluripotency-associated protein 2-like pseudo 101055711 XM_017321223 Gm29716 - - 5 E5|5 predicted gene, 29716 protein-coding 105243357 XR_870576 Gm39304 - - 9 A3|9 predicted gene, 39304 ncRNA 359971 DXMgc108 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 108 unknown 102634696 Gm28302 - - Y|Y predicted gene 28302 protein-coding 382872 Gm5204 EG382872 - 14|14 B predicted gene 5204 pseudo 74744 Mm.117802 NR_155282 5830408C22Rik 2700026D01Rik - 8|8 RIKEN cDNA 5830408C22 gene ncRNA 100504206 Mm.407272 Gm16055 - - 6|6 3.6 cM predicted gene 16055 unknown 109279940 LOC109279940 Mm318 - - VISTA enhancer mm318 biological-region 100418329 Gm14048 - - 2|2 F1 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 pseudogene pseudo 16514 Mm.333863 NM_010602 ENSMUSG00000096146 Kcnj11 Kir6.2|mBIR - 7 B3|7 29.66 cM potassium inwardly rectifying channel, subfamily J, member 11 protein-coding 76311 Mm.367129 NR_045995 ENSMUSG00000097616 1110019D14Rik - - 6|6 A1 RIKEN cDNA 1110019D14 gene ncRNA 53690 D0Rp5 RP5 - - DNA segment, Roswell Park 5 unknown 100035074 Egq12 - - - early growth QTL 12 unknown 71128 Mm.66849 4933417C20Rik AA536659 - - RIKEN cDNA 4933417C20 gene protein-coding 387190 NR_029581 ENSMUSG00000065411 Mir195a Mir195|Mirn195|mir-195a|mmu-mir-195|mmu-mir-195a - 11|11 B3 microRNA 195a ncRNA 102633590 XR_380246 Gm31378 - - 10 B1|10 predicted gene, 31378 ncRNA 112163641 Gm49399 - - - upstream binding transcription factor, RNA polymerase I pseudogene pseudo 62307 D1Mit210 - - 1 97.55 cM DNA segment, Chr 1, Massachusetts Institute of Technology 210 unknown 102633559 XR_386664 Gm31355 - - 19 C1|19 predicted gene, 31355 ncRNA 11555 Mm.5598 NM_007420 ENSMUSG00000045730 Adrb2 Adrb-2|Badm|Gpcr7 - 18 E1|18 35.1 cM adrenergic receptor, beta 2 protein-coding 100041530 Mm.444311 NR_033121 ENSMUSG00000096488 Gm10409 EG666890|Gm8348 - 14|14 A1 predicted pseudogene 8348 pseudo 26458 Mm.290044 NM_011978 ENSMUSG00000027359 Slc27a2 ACSVL1|FATP2|VLCS|Vlac|Vlacs - 2|2 F1 solute carrier family 27 (fatty acid transporter), member 2 protein-coding 69034 Mm.211372 NM_026916 ENSMUSG00000095789 Nupr1l 1810010E01Rik|4930579G22Rik|Nupr2 - 5 G1.3|5 nuclear protein transcriptional regulator 1 like protein-coding 100036165 Ltxs3 - - 11 46.74 cM lethal factor toxin susceptibility 3 unknown 66048 Mm.73608 NM_025318 ENSMUSG00000047260 Emc6 0610009E20Rik|0610025L18Rik|Tmem93 - 11|11 B4 ER membrane protein complex subunit 6 protein-coding 328906 Mm.136064 NR_045399 ENSMUSG00000086095 Gm15328 D830029L11 - 18|18 A1 predicted gene 15328 ncRNA 100039695 Rpl19-ps1 Gm15424 - 1|1 C5 ribosomal protein L19, pseudogene 1 pseudo 19578 Rb(5.17)7Rma Rb7Rma - - Robertsonian translocation, Chr 5 and 17, Universita di Roma 7 other 102634312 LOC102634312 - - 15 D3 cytochrome b-c1 complex subunit 6, mitochondrial pseudogene pseudo 72603 Mm.261124 2700033N17Rik - - 2|2 E5 RIKEN cDNA 2700033N17 gene unknown 75718 Mm.251530 NM_029401 ENSMUSG00000028753 Vwa5b1 4931403E03Rik - 4|4 D3 von Willebrand factor A domain containing 5B1 protein-coding 66391 Mm.472722 NM_133677 ENSMUSG00000102101 Zbtb11os1 2310061J03Rik - 16|16 C1.1 zinc finger and BTB domain containing 11, opposite strand 1 ncRNA 102639974 LOC102639974 - - X A6 40S ribosomal protein S23 pseudogene pseudo 74098 Mm.274853 NM_028754 ENSMUSG00000028608 0610037L13Rik 1110008H16Rik - 4|4 C7 RIKEN cDNA 0610037L13 gene protein-coding 105244814 XR_868828 Gm40358 - - 6 A3.3|6 predicted gene, 40358 ncRNA 102637516 Gm29413 - - Y|Y predicted gene 29413 protein-coding 15441 Mm.348429 NM_010470 ENSMUSG00000028759 Hp1bp3 Hp1bp74 - 4|4 D3 heterochromatin protein 1, binding protein 3 protein-coding 100041433 Mm.441741 NM_001243138 ENSMUSG00000056300 Zfp981 Gm13247 - 4 E1|4 zinc finger protein 981 protein-coding 100035676 Bod4 BOD7.1 - 7 43.46 cM bone length and organs 4 unknown 16981 Mm.404786 NM_010733 ENSMUSG00000036295 Lrrn3 NLRR-3 - 12|12 B1 leucine rich repeat protein 3, neuronal protein-coding 117011 Tabw - - 7 35.91 cM TallyHo associated body weight unknown 105243965 XR_865590 Gm39669 - - 1 C5|1 predicted gene, 39669 ncRNA 171277 Mm.377228 NM_134243 ENSMUSG00000063998 Vmn1r211 V1rh20 - 13|13 A3.1 vomeronasal 1 receptor 211 protein-coding 402774 Mm.209170 NR_045704 ENSMUSG00000105816 D030025E07Rik - - 3|3 G2 RIKEN cDNA D030025E07 gene ncRNA 668936 Rpl5-ps2 Gm14217 - 2|2 H1 ribisomal protein L5, pseudogene 2 pseudo 105245341 Gm40813 - - 11|11 predicted gene, 40813 ncRNA 108168249 Gm46524 - - 15 E1|15 60S ribosomal protein L36 pseudogene pseudo 70240 Mm.124666 NM_027356 ENSMUSG00000051502 Ufsp1 2700038N03Rik|D5Ertd655e - 5 G2|5 76.33 cM UFM1-specific peptidase 1 protein-coding 263876 Mm.34342 NM_170756 ENSMUSG00000047030 Spata2 AI504642|mKIAA0757 - 2|2 H3 spermatogenesis associated 2 protein-coding 106972 AU015601 - - - expressed sequence AU015601 protein-coding 28156 D16Ium6e D16Ium6 - - DNA segment, Chr 16, Indiana University Medical 6, expressed unknown 100035394 Mskt9 - - - musculoskeletal traits 9 unknown 100039083 Gm2040 - - 5|5 C3.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, pseudogene pseudo 108371 C58v3 C58v-3 - - C58 endogenous ecotropic virus 3 other 100418141 Gm19029 - - 1|1 E1.1 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 109816 H49 H(a) - - histocompatibility 49 protein-coding 100503323 Mm.491516 XR_873035 A230087F16Rik - - 12|12 F1 RIKEN cDNA A230087F16 gene ncRNA 76861 4832441B07Rik - - 4|4 RIKEN cDNA 4832441B07 gene protein-coding 16286 In(4)32Rk-p In(4)32Rk|In32Rk - - inversion, Chr 4, Roderick 32, proximal other 102467550 n-TLaag5 n-Tl5 - 13 A2|13 nuclear encoded tRNA leucine 5 (anticodon AAG) tRNA 102637786 Gm34511 - - 17|17 predicted gene, 34511 ncRNA 552906 Mm.445726 LOC552906 - - - uncharacterized LOC552906 unknown 13434 Mm.6979 NM_010067 ENSMUSG00000026723 Trdmt1 Dnmt2|Rnmt2 - 2|2 A1 tRNA aspartic acid methyltransferase 1 protein-coding 102639881 XR_379898 Gm36088 - - 9 F3|9 predicted gene, 36088 ncRNA 22609 Ybx1-ps1 YMSY-2|Ybx1-ps - - Y box protein 1, pseudogene 1 pseudo 108168266 LOC108168266 - - 15 F1 60S ribosomal protein L37 pseudogene pseudo 105689 Mm.6478 NM_207215 ENSMUSG00000033004 Mycbp2 AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243 - 14 E2.3|14 51.79 cM MYC binding protein 2 protein-coding 102640135 XR_389523 Gm36274 - - 5 F|5 predicted gene, 36274 ncRNA 102638731 XR_379172 Gm35225 - - 9 A2|9 predicted gene, 35225 ncRNA 77739 Mm.331690 NM_029967 ENSMUSG00000066113 Adamtsl1 5930437A14Rik|6720426B09Rik|ADAMTSL-1 - 4|4 C4 ADAMTS-like 1 protein-coding 61520 D8Mit152 - - 8 58.7 cM DNA segment, Chr 8, Massachusetts Institute of Technology 152 unknown 12300 Mm.277338 NM_007583 ENSMUSG00000019146 Cacng2 AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler - 15 E1|15 36.92 cM calcium channel, voltage-dependent, gamma subunit 2 protein-coding 61439 D6Mit109 - - 6 55.86 cM DNA segment, Chr 6, Massachusetts Institute of Technology 109 unknown 108168357 XR_001782269 Gm46607 - - 17 C|17 predicted gene, 46607 ncRNA 214425 Mm.138455 NM_173385 ENSMUSG00000042254 Cilp 9830114D16|C130036G17Rik - 9|9 C cartilage intermediate layer protein, nucleotide pyrophosphohydrolase protein-coding 387154 NR_029550 ENSMUSG00000104858 Mir136 Mirn136|mir-136|mmu-mir-136 - 12|12 F1 microRNA 136 ncRNA 258568 Mm.329750 NM_146575 ENSMUSG00000061637 Olfr1457 MOR202-20 - 19|19 A olfactory receptor 1457 protein-coding 100417147 Gm18422 - - 6|6 D3 RNA binding motif protein 17 pseudogene pseudo 433099 Mm.328993 NM_001163192 ENSMUSG00000034923 Ly6g6f CJ068215 - 17|17 B1 lymphocyte antigen 6 complex, locus G6F protein-coding 100217459 NR_028554 Snord70 MBII-234|snoRNA234 - 1 C2|1 small nucleolar RNA, C/D box 70 snoRNA 62411 D16Mit130 - - 16 2.65 cM DNA segment, Chr 16, Massachusetts Institute of Technology 130 unknown 13594 ebo - - - ebouriffe unknown 75256 Mm.389205 XR_373637 ENSMUSG00000104014 4930562F17Rik - - 1|1 H1 RIKEN cDNA 4930562F17 gene unknown 105243073 Mm.446009 LOC105243073 - - - uncharacterized LOC105243073 ncRNA 109536 Mnek1c - - - modifier of Nek1 (NIMA-related expressed kinase 1, kidney weight unknown 71280 Mm.26017 4933429H19Rik - - 3|3 RIKEN cDNA 4933429H19 gene unknown 100417206 Gm18450 - - 1|1 H2.1 crumbs homolog 1 pseudogene pseudo 171561 Murrs2 - - - murine retrovirus related DNA sequences 2 other 67391 Mm.126404 NM_026126 ENSMUSG00000031198 Fundc2 4833415N24Rik|DC44|HCBP6 - X|X A7.3 FUN14 domain containing 2 protein-coding 170660 Tmevp1 - - - Theiler's murine encephalomyelitis virus persistence 1 protein-coding 319154 Mm.383293 NM_178215 ENSMUSG00000074403 Hist2h3b H3-615|H3-616 - 3|3 F2.1 histone cluster 2, H3b protein-coding 100504333 Mm.391908 NR_108021 ENSMUSG00000097077 Gm16712 - - 17 D|17 29.08 cM predicted gene, 16712 ncRNA 102638752 Gm35241 - - 4 D2.2|4 predicted gene, 35241 pseudo 208228 Mm.49309 NM_172457 ENSMUSG00000003348 Mob3a 5330417K06Rik|A630029F06|AV218468|Mobkl2a - 10|10 C1 MOB kinase activator 3A protein-coding 100416442 Gm15636 - - 12|12 F1 bridging integrator 3 pseudogene pseudo 100861744 Gm21181 - - 13 D2.3|13 predicted gene, 21181 pseudo 102632421 Gm30496 - - 19|19 predicted gene, 30496 ncRNA 622589 Mm.378999 Gm6336 EG622589 - 10|10 D3 ribosomal protein L12 pseudogene pseudo 17392 Mm.4993 NM_010809 ENSMUSG00000043613 Mmp3 EMS-2|MMP-3|SL-1|SLN-1|SLN1|STR-1|Stmy1|Str1 - 9 A1|9 2.46 cM matrix metallopeptidase 3 protein-coding 62299 D19Mit76 - - 19 56.28 cM DNA segment, Chr 19, Massachusetts Institute of Technology 76 unknown 404741 Iglj3p EG404741|Gm5411|Igl-J3p - 16|16 A3 immunoglobulin lambda joining 3 pseudogene pseudo 102637052 XR_382291 Gm33958 - - 13 A4|13 predicted gene, 33958 ncRNA 108167738 XR_001779501 Gm46166 - - 1 G3|1 predicted gene, 46166 ncRNA 100042192 Mm.429322 Gm3715 5033421C21Rik - 14 A1|14 predicted gene 3715 ncRNA 100041265 NM_001111343 Gm9755 - - 8|8 B3.2 Tu translation elongation factor pseudogene pseudo 12857 Mm.386758 NM_009941 ENSMUSG00000031818 Cox4i1 AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1 - 8 E1|8 69.99 cM cytochrome c oxidase subunit 4I1 protein-coding 12395 Mm.4909 NM_009822 ENSMUSG00000006586 Runx1t1 Cbfa2t1h|ETO|MTG8 - 4 A1|4 5.88 cM runt-related transcription factor 1; translocated to, 1 (cyclin D-related) protein-coding 100043771 XM_001480984 Gm10651 - - 7|7 A3 predicted pseudogene 10651 protein-coding 62511 D11Mit108 - - 11 21.96 cM DNA segment, Chr 11, Massachusetts Institute of Technology 108 unknown 11922 Mm.5106 NM_009717 ENSMUSG00000037984 Neurod6 Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2 - 6 B3|6 27.53 cM neurogenic differentiation 6 protein-coding 67530 Mm.379136 NM_026219 ENSMUSG00000021520 Uqcrb 2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC - 13|13 B3 ubiquinol-cytochrome c reductase binding protein protein-coding 245126 Mm.245747 NM_177363 ENSMUSG00000053338 Tarm1 9930022N03Rik|Gm9904|OLT-2 - 7|7 A1 T cell-interacting, activating receptor on myeloid cells 1 protein-coding 100503812 Mm.442580 XR_381830 3300002A11Rik 2700016B18Rik - 12|12 E RIKEN cDNA 3300002A11 gene unknown 27775 sWSS86 - - - DNA segment, sWSS86 (Research Genetics) unknown 19141 Mm.17185 NM_011175 ENSMUSG00000021190 Lgmn AEP|AI746452|AU022324|Prsc1 - 12|12 E legumain protein-coding 71877 Mm.29178 NM_027974 ENSMUSG00000041809 Efhc1 1700029F22Rik|mRib72-1|myoclonin1 - 1|1 A4 EF-hand domain (C-terminal) containing 1 protein-coding 666167 Gm7962 EG666167 - 15|15 A1 Ewing sarcoma breakpoint region 1 pseudogene pseudo 65948 DXCch1 - - - DNA segment, Chr X, Celltech Chiroscience 1 unknown 102640717 XM_011247098 Gm36718 - - 18 E3|18 predicted gene, 36718 protein-coding 75504 Mm.271255 NM_029314 ENSMUSG00000027886 1700013F07Rik - - 3|3 F3 RIKEN cDNA 1700013F07 gene protein-coding 52164 D4Ertd117e D4Ertd41e - 4 82.82 cM DNA segment, Chr 4, ERATO Doi 117, expressed unknown 545062 Gm5802 EG545062 - 14|14 D1 predicted gene 5802 pseudo 105246637 XR_878185 Gm41898 - - X C3|X predicted gene, 41898 ncRNA 53777 D17Leh26 D17Tu26 - - DNA segment, Chr 17, Lehrach 26 unknown 108395 Xmv40 Xmv-40 - - xenotropic murine leukemia virus 40 other 319299 Mm.157648 A630075K04Rik - - 16|16 A1 RIKEN cDNA A630075K04 gene protein-coding 72151 Mm.27997 NM_028128 ENSMUSG00000029363 Rfc5 2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5 - 5|5 F replication factor C (activator 1) 5 protein-coding 625405 Gm13015 - - 4|4 D1 polymerase (RNA) II (DNA directed) polypeptide L pseudogene pseudo 97101 C85504 - - - expressed sequence C85504 unknown 108168433 Gm46670 - - X A5|X multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 61148 DXMit221 - - - DNA Segment, Chr X Massachusetts Institute of Technology 221 unknown 60889 D7Mit80 - - 7 26.29 cM DNA segment, Chr 7, Massachusetts Institute of Technology 80 unknown 18424 Mm.134516 NM_144841 ENSMUSG00000021848 Otx2 E130306E05Rik - 14 C1|14 25.36 cM orthodenticle homeobox 2 protein-coding 101056088 Gm28649 - - Y A1|Y predicted gene 28649 pseudo 105247054 Gm15589 - - 5|5 11.05 cM predicted gene 15589 ncRNA 14617 Mm.389394 NM_010290 ENSMUSG00000068615 Gjd2 Gja9|connexin36|cx36 - 2|2 E4 gap junction protein, delta 2 protein-coding 271424 Mm.209679 NM_173027 ENSMUSG00000024210 Ip6k3 D830007E07Rik|Ihpk3 - 17|17 A3.3 inositol hexaphosphate kinase 3 protein-coding 654494 Mm.475331 NM_001039193 ENSMUSG00000067156 Gm7337 EG654494 - 5 E1|5 DAZ interacting protein 1 pseudogene pseudo 102466641 NR_105811 ENSMUSG00000099218 Mir5124b Gm27681|mmu-mir-5124b - 14|14 A1 microRNA 5124b ncRNA 100042357 Gm20911 - - Y|Y predicted gene, 20911 protein-coding 105244333 XR_866878 9030607L20Rik - - 2|2 H1 RIKEN cDNA 9030607L20 gene ncRNA 78639 Mm.160109 NR_131005 ENSMUSG00000092276 1700116B05Rik - - 16|16 B5 RIKEN cDNA 1700116B05 gene ncRNA 245290 Gm4982 EG245290 - 3|3 F2.1 TD and POZ domain containing 3 pseudogene pseudo 17756 Mm.256966 NM_008632 ENSMUSG00000015222 Map2 G1-397-34|MAP-2|Mtap-2|Mtap2|repro4 - 1 C3|1 33.49 cM microtubule-associated protein 2 protein-coding 105246732 XR_878611 Gm41974 - - 1 G3|1 predicted gene, 41974 ncRNA 102633917 XR_382011 Gm31626 - - 12 F2|12 predicted gene, 31626 ncRNA 109279895 LOC109279895 Mm68 - - VISTA enhancer mm68 biological-region 666244 Mm.381904 NM_001081983 ENSMUSG00000089768 Tmsb15b1 Tm15b - X F1|X thymosin beta 15b1 protein-coding 102639576 XR_389688 Gm35856 - - 3 B|3 predicted gene, 35856 ncRNA 100038372 Gm10763 - - - predicted gene 10763 unknown 674277 XR_386781 Gm9618 - - 19|19 D2 predicted gene 9618 ncRNA 108705 Mm.28853 NM_145925 ENSMUSG00000009291 Pttg1ip 1810010L20Rik|AI314311|AU018448|C79540|PBF - 10|10 C1 pituitary tumor-transforming 1 interacting protein protein-coding 102635493 XR_378508 Gm32816 Gm45019 - 7 F3|7 predicted gene, 32816 ncRNA 105242753 XR_869400 Gm38885 - - 6 F1|6 predicted gene, 38885 ncRNA 21942 Mm.244187 NM_011612 ENSMUSG00000028965 Tnfrsf9 4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63 - 4 E2|4 81.52 cM tumor necrosis factor receptor superfamily, member 9 protein-coding 112407 Mm.133037 NM_028133 ENSMUSG00000035105 Egln3 2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20 - 12|12 C1 egl-9 family hypoxia-inducible factor 3 protein-coding 78544 C030001C17Rik - - X|X RIKEN cDNA C030001C17 gene protein-coding 100036377 Mpcp11 - - - myeloid progenitor cell proliferation 11 unknown 108167582 Gm45405 - - 8 B3.1|8 predicted gene 45405 pseudo 320718 Mm.482704 NM_177243 ENSMUSG00000042268 Slc26a9 E030002L01Rik - 1|1 E4 solute carrier family 26, member 9 protein-coding 665305 Gm7579 EG665305 - 7|7 F5 predicted gene 7579 protein-coding 26549 Mm.46232 NM_013712 ENSMUSG00000031312 Itgb1bp2 Chordc3 - X|X D integrin beta 1 binding protein 2 protein-coding 68800 Mm.336041 NM_026841 ENSMUSG00000037086 Prr32 1110059M19Rik - X|X A4 proline rich 32 protein-coding 100038684 Mm.425467 Gm10618 - - - predicted gene 10618 unknown 70845 Mm.158461 NR_045802 ENSMUSG00000027345 4921508D12Rik - - 2|2 F2 RIKEN cDNA 4921508D12 gene ncRNA 668097 Gm8976 EG668097 - 1 G3|1 ribosomal protein S2 pseudogene pseudo 108168227 XR_001781596 Gm46505 - - 15 B3.1|15 predicted gene, 46505 ncRNA 69871 Mm.276058 NM_027242 ENSMUSG00000029725 Ppp1r35 2010007H12Rik|2010011D20Rik|AL024004 - 5|5 G2 protein phosphatase 1, regulatory subunit 35 protein-coding 105242922 XR_882044 Gm38996 - - 7 B3|7 predicted gene, 38996 ncRNA 100417175 Gm14722 - - X|X A7.2 melanoma antigen, family A, 4 pseudogene pseudo 93928 D16Jhu67 497N4.SP6 - - DNA segment, Chr 16, Johns Hopkins University 67 unknown 100035154 Bntq13 - - - bone traits QTL 13 unknown 257896 Olfr1171-ps1 MOR174-17P - 2|2 D olfactory receptor 1171, pseudogene 1 pseudo 75129 Mm.487077 4930524J08Rik - - 5|5 E4 RIKEN cDNA 4930524J08 gene protein-coding 107576 Tcrg-C4 TRGC4 - 13 A2|13 T cell receptor gamma, constant 4 other 320254 Mm.417653 A630084N20Rik - - 17|17 RIKEN cDNA A630084N20 gene protein-coding 54006 Mm.28392 NM_016874 ENSMUSG00000058886 Deaf1 AU042387|C230009B13Rik|NUDR - 7|7 F5 DEAF1, transcription factor protein-coding 21874 tk - - - tail-kinks unknown 380755 Mm.390463 NM_001033437 ENSMUSG00000071342 Lsmem1 Gm889 - 12|12 B1 leucine-rich single-pass membrane protein 1 protein-coding 102633854 XR_373284 Gm31581 - - 1 A5|1 predicted gene, 31581 ncRNA 257817 Olfr277-ps1 EG257817|GA_x5J8B7W4W3R-189177-188236|Gm5022 - 14 E5|14 olfactory receptor 277, pseudogene 1 pseudo 668228 Gm12269 - - 11|11 B2 predicted gene 12269 pseudo 723944 NR_029792 ENSMUSG00000065462 Mir200c Mirn200c|mir-200c - 6|6 F2 microRNA 200c ncRNA 100041254 Gm3235 Gm1703 - 8 C5|8 predicted gene 3235 protein-coding 100041163 Rpl23a-ps3 Gm3174 - 14 B|14 ribosomal protein L23A, pseudogene 3 pseudo 108510656 Alas2r1 - - X F3 Alas2R1 erythroid cis-regulatory module biological-region 22037 Mm.1297 NM_011635 ENSMUSG00000051257 Trap1a Tra-P1A - X F1|X 61.35 cM tumor rejection antigen P1A protein-coding 102640417 XR_384846 Gm36482 - - 16 B4|16 predicted gene, 36482 ncRNA 108168308 XR_001782000 Smim34 Gm46568 - 16 C4|16 small integral membrane protein 34 protein-coding 102633418 XR_383252 Gm31250 - - 14 A3|14 predicted gene, 31250 ncRNA 110120498 LOC110120498 - - - VISTA enhancer mm1567 biological-region 102636823 XR_387231 Gm28888 - - 1 D|1 predicted gene 28888 ncRNA 73557 NR_131165 1700096P03Rik - - 8|8 C3 RIKEN cDNA 1700096P03 gene ncRNA 102635485 XR_868518 Gm32811 - - 5 G1.1|5 predicted gene, 32811 ncRNA 66658 Mm.128227 NM_025689 ENSMUSG00000025645 Ccdc51 5730568A12Rik|AI551049 - 9|9 F2 coiled-coil domain containing 51 protein-coding 56072 Mm.298242 NM_019516 ENSMUSG00000024972 Lgals12 Grip1|gal-12 - 19|19 A lectin, galactose binding, soluble 12 protein-coding 98778 Mm.441358 AA409087 - - - expressed sequence AA409087 unknown 100040176 Gm2645 - - 13|13 A5 ubiquitin-conjugating enzyme E2H pseudogene pseudo 102638809 Gm20428 - - 1|1 18.23 cM predicted gene 20428 pseudo 12285 cac cat - - recessive cataract unknown 72535 Mm.331583 NM_028270 ENSMUSG00000035561 Aldh1b1 2700007F14Rik - 4|4 B1 aldehyde dehydrogenase 1 family, member B1 protein-coding 100416324 Gm18040 - - 10|10 D1 predicted gene, 18040 pseudo 102640873 XR_376483 Gm36835 - - 4 C6|4 predicted gene, 36835 ncRNA 102634191 XR_382215 Gm31834 - - 13 A3.3|13 predicted gene, 31834 ncRNA 102637566 LOC102637566 - - 2 A3 guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 pseudogene pseudo 258327 Mm.377436 NM_146330 ENSMUSG00000050853 Olfr958 MOR224-9 - 9|9 A5.1 olfactory receptor 958 protein-coding 667556 Gm8701 EG667556 - 10|10 D1 THO complex 4 pseudogene pseudo 434304 Gm5609 EG434304 - 8|8 A4 copine VIII pseudogene pseudo 103711 Mm.254704 NM_134021 ENSMUSG00000018659 Pnpo AI415282 - 11|11 D pyridoxine 5'-phosphate oxidase protein-coding 100416439 Gm15061 - - X|X F2 ring finger protein 13 pseudogene pseudo 71465 8430413B15Rik - - 6|6 RIKEN cDNA 8430413B15 gene protein-coding 668544 Ighv1-62-1 EG668544|Gm9232 - 12 F2|12 immunoglobulin heavy variable 1-62-1 other 17671 Ms9 MMS9 - - minisatellites detected by probe MMS9 other 73826 Mm.23758 NM_178627 ENSMUSG00000041815 Poldip3 1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649 - 15|15 E1 polymerase (DNA-directed), delta interacting protein 3 protein-coding 18976 Mm.277996 NM_008895 ENSMUSG00000020660 Pomc ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH - 12 A1.1|12 1.99 cM pro-opiomelanocortin-alpha protein-coding 61358 D4Mit160 - - 4 77.98 cM DNA segment, Chr 4, Massachusetts Institute of Technology 160 unknown 20604 Mm.2453 NM_009215 ENSMUSG00000004366 Sst SOM|SRIF|SS|Smst - 16 B1|16 15.0 cM somatostatin protein-coding 268566 Mm.341742 NM_145965 ENSMUSG00000047454 Gphn 5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph - 12|12 C3 gephyrin protein-coding 654839 Traj5 - - 14|14 C2 T cell receptor alpha joining 5 other 654468 Gm7335 EG654468|Gm10202|Scocp - 17|17 B1 Scoc pseudogene pseudo 100503043 Mm.31961 NM_001202500 ENSMUSG00000049804 Armcx4 AI448196|Gm195 - X|X E3 armadillo repeat containing, X-linked 4 protein-coding 171237 Mm.377193 NM_134203 ENSMUSG00000051687 Vmn1r73 V1rg2 - 7|7 A1 vomeronasal 1 receptor 73 protein-coding 432777 Mm.415319 NR_045293 ENSMUSG00000113346 Eprn AU019512|D630045M09Rik - 13|13 C1 ephemeron, early developmental lncRNA ncRNA 100503519 Mm.483250 XR_379026 Gm19744 - - 8 B1.2|8 27.24 cM predicted gene, 19744 unknown 102640906 Mm.95526 XR_001783034 Gm13049 - - 4|4 81.5 cM predicted gene 13049 ncRNA 105242869 XM_011249375 Gm38958 - - 11 D|11 predicted gene, 38958 protein-coding 192162 Pcdha@ - - 18|18 B2-B3 protocadherin alpha cluster other 436146 Gm13104 - - 4|4 E1 zinc finger, MYND domain containing 11 pseudogene pseudo 192678 Mm.41265 NM_138956 ENSMUSG00000025795 Rassf3 AW212023|AW322379 - 10|10 D2 Ras association (RalGDS/AF-6) domain family member 3 protein-coding 108168874 XR_001783857 Gm46807 - - 3 E1|3 predicted gene, 46807 ncRNA 100035593 Arigm5 - - - anti-RBC IgM antibodies 5 unknown 102634732 XR_879496 Gm32245 - - 19 A|19 predicted gene, 32245 ncRNA 98221 Mm.379278 NM_145380 ENSMUSG00000027170 Eif3m Ga17|Pcid1|Tango7 - 2 E2|2 55.06 cM eukaryotic translation initiation factor 3, subunit M protein-coding 102631542 XR_384637 Gm29854 - - 16 A1|16 predicted gene, 29854 ncRNA 102640256 XR_877479 Gm36368 Gm45787 - 18 E1|18 predicted gene, 36368 ncRNA 53793 D16H21S52 D21S52h - - DNA segment, Chr 16, human D21S52 unknown 624430 Gm12444 - - 4|4 B1 predicted gene 12444 pseudo 445261 Dnmt3a-ps1 - - 3|3 E3 DNA methyltransferase 3A, pseudogene 1 pseudo 545600 Gm12372 - - 4|4 A5 predicted gene 12372 protein-coding 53783 D15Byu21 D0Byu21 - - DNA segment, Chr 15, Brigham Young University 21 unknown 54634 Mm.67912 NM_018832 ENSMUSG00000031147 Magix Pdzx|Sfc18 - X A1.1|X 3.46 cM MAGI family member, X-linked protein-coding 108167595 LOC108167595 - - 1 A1 XK-related protein 4-like pseudo 353236 Mm.308500 NM_001003671 ENSMUSG00000103255 Pcdhac1 CNRc1 - 18|18 B2-B3 protocadherin alpha subfamily C, 1 protein-coding 102638001 XR_377711 Gm34676 - - 6 B3|6 predicted gene, 34676 ncRNA 61446 D6Mit125 - - 6 30.15 cM DNA segment, Chr 6, Massachusetts Institute of Technology 125 unknown 99571 Mm.16422 NM_133862 ENSMUSG00000033860 Fgg 3010002H13Rik|AI256424 - 3 E3|3 36.94 cM fibrinogen gamma chain protein-coding 62274 D19Mit28 - - 19 10.85 cM DNA segment, Chr 19, Massachusetts Institute of Technology 28 unknown 100862361 Gm21673 - - 7|7 predicted gene, 21673 protein-coding 668712 Gm9314 EG668712 - 3|3 F3 karyopherin (importin) alpha 2 pseudogene pseudo 102639389 Mm.447721 XR_871277 Gm35715 Gm42762 - 9 F2|9 predicted gene, 35715 ncRNA 70871 Mm.399566 4921517O11Rik - - 18|18 A2 RIKEN cDNA 4921517O11 gene protein-coding 102635878 Gm14033 - - 2|2 31.65 cM predicted gene 14033 ncRNA 108168961 Gm46861 - - 4 E1|4 predicted gene, 46861 pseudo 232974 XM_006540481 ENSMUSG00000108367 Gm4881 EG232974 - 7|7 A3 predicted gene 4881 protein-coding 97402 Mm.22314 NR_015609 ENSMUSG00000110001 C86187 - - 7|7 B3 expressed sequence C86187 ncRNA 12928 Mm.280125 NM_133656 ENSMUSG00000017776 Crk Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38 - 11 B5|11 45.92 cM v-crk avian sarcoma virus CT10 oncogene homolog protein-coding 70062 Mm.45791 NM_027302 ENSMUSG00000031181 Ctag2 1700030B21Rik - X|X A7.1 cancer/testis antigen 2 protein-coding 102635203 XR_375283 Gm32600 - - 2 H3|2 predicted gene, 32600 ncRNA 399510 Mm.291936 NM_201519 ENSMUSG00000034761 Map4k5 4432415E19Rik|GCKR|KHS|MAPKKKK5 - 12|12 C2 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 14732 Mm.210196 NM_008149 ENSMUSG00000024978 Gpam GPAT|GPAT-1|GPAT1|P90 - 19 D2|19 50.81 cM glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 70133 2210406H18Rik - - 7|7 RIKEN cDNA 2210406H18 gene protein-coding 27479 11S - - - DNA segment, 11S unknown 102639353 XR_373717 Gm35686 - - 1 H3|1 predicted gene, 35686 ncRNA 61007 D4Mit172 - - 4 16.7 cM DNA segment, Chr 4, Massachusetts Institute of Technology 172 unknown 107708 Prdx2-rs6 - - - peroxiredoxin 2, related sequence 6 protein-coding 100272219 Mm.382103 NR_027448 ENSMUSG00000097345 AA543186 - - 2 A3|2 expressed sequence AA543186 ncRNA 12443 Mm.273049 NM_007631 ENSMUSG00000070348 Ccnd1 AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1 - 7 F5|7 88.92 cM cyclin D1 protein-coding 102637160 XR_380716 Gm34044 - - 10 C3|10 predicted gene, 34044 ncRNA 74231 1700017H01Rik - - 18|18 RIKEN cDNA 1700017H01 gene protein-coding 105247249 XR_881965 Gm42379 - - 7 B2|7 predicted gene, 42379 ncRNA 60916 D8Mit98 - - 8 26.44 cM DNA segment, Chr 8, Massachusetts Institute of Technology 98 unknown 171189 Mm.377169 NM_134171 ENSMUSG00000115644 Vmn1r17 V1rc16 - 6|6 B3 vomeronasal 1 receptor 17 protein-coding 246257 Mm.41496 NM_027136 ENSMUSG00000038268 Ovca2 9030414M07Rik - 11|11 B5 candidate tumor suppressor in ovarian cancer 2 protein-coding 105246921 XR_880436 Gm42116 - - 5 E2|5 predicted gene, 42116 ncRNA 492872 Aod4 - - 2 82.95 cM autoimmune ovarian dysgenesis 4 unknown 668209 Gm9046 EG668209 - 10|10 D2 predicted gene 9046 pseudo 100503706 Gm19847 - - 17|17 19.64 cM small subunit of serine palmitoyltransferase A-like pseudo 105732 Mm.267178 NM_134087 ENSMUSG00000046761 Fam83h AA409316 - 15|15 D3 family with sequence similarity 83, member H protein-coding 68646 Mm.244226 NM_001040395 ENSMUSG00000022253 Nadk2 MNADK|Nadkd1 - 15|15 A1 NAD kinase 2, mitochondrial protein-coding 102633959 XR_376872 Gm31656 - - 5 B2|5 predicted gene, 31656 ncRNA 107463 Cpl1 Cpl-1 - - plasma corticosterone level 1 protein-coding 102631606 XR_378475 Gm29903 - - 7 F2|7 predicted gene, 29903 ncRNA 108168026 XR_001780681 Gm46374 - - 12 E|12 predicted gene, 46374 ncRNA 52202 Mm.28199 NM_172762 ENSMUSG00000033931 Rbm34 4930547K05Rik|6330444B11|D8Ertd233e - 8 E2|8 74.64 cM RNA binding motif protein 34 protein-coding 51991 Mm.350239 D8Ertd67e - - 8 5.73 cM DNA segment, Chr 8, ERATO Doi 67, expressed unknown 105243067 XR_869991 Gm39098 - - 7 F3|7 predicted gene, 39098 ncRNA 15209 Mm.4802 NM_010420 ENSMUSG00000040726 Hesx1 HES-1|Rpx - 14|14 A3 homeobox gene expressed in ES cells protein-coding 100048983 Gm14453 - - 2|2 predicted gene 14453 unknown 110106 Ht6.9 - - - T cell clone BDC-6.9 antigen protein-coding 100124682 Trbv18 - - 6|6 B1 T cell receptor beta variable 18 pseudo 102633123 XR_391904 ENSMUSG00000101745 Gm28764 - - Y A2|Y predicted gene 28764 ncRNA 270711 Mm.303077 NM_001081165 ENSMUSG00000039508 Fam26d 4732454E20Rik|AI586164|Calhm4|Gm643 - 10|10 B1 family with sequence similarity 26, member D protein-coding 100035327 Bpq13 - - - blood pressure QTL 13 unknown 66330 Mm.44800 NM_025492 ENSMUSG00000035085 1700020L24Rik - - 11|11 C RIKEN cDNA 1700020L24 gene protein-coding 74319 Mm.429312 NM_028865 ENSMUSG00000090266 Mettl23 1110005A03Rik|1500035B17Rik|4933424L15Rik - 11|11 E2 methyltransferase like 23 protein-coding 665499 Gm7663 - - 5|5 E3 predicted gene 7663 pseudo 102640829 XR_390815 Gm13257 - - 4 D2.3|4 66.25 cM predicted gene 13257 ncRNA 105244064 XR_865891 ENSMUSG00000097416 Gm26670 WI1-2736D10.2 - 1 H6|1 predicted gene, 26670 ncRNA 21063 T(11A2;16B3)238Dn T(11;16)238Dn|T238Dn - - reciprocal translocation, Chr 11, cytogenetic band A2; and Chr 16, cytogenetic band B3, Davisson 238 other 62324 D6Mit121 - - 6 29.77 cM DNA segment, Chr 6, Massachusetts Institute of Technology 121 unknown 100504740 Mm.383522 XR_105061 ENSMUSG00000107412 Gm20383 - - 6 C3|6 35.81 cM predicted gene, 20383 ncRNA 12995 Mm.23692 NM_007788 ENSMUSG00000074698 Csnk2a1 CK2|Csnk2a1-rs4 - 2|2 G3 casein kinase 2, alpha 1 polypeptide protein-coding 94062 Mm.29746 NM_053159 ENSMUSG00000032563 Mrpl3 2010320L16Rik|5930422H18Rik|AA407889 - 9|9 F1 mitochondrial ribosomal protein L3 protein-coding 16744 l1Rk2 l(1)-2Rk - - lethal, Chr 1, Roderick 2 unknown 100035056 Egq1 - - - early growth QTL 1 unknown 62609 D13Mit149 - - 13 59.67 cM DNA segment, Chr 13, Massachusetts Institute of Technology 149 unknown 667159 Gm8488 EG667159 - 5|5 F ARP1 actin-related protein 1A, centractin alpha pseudogene pseudo 12352 Mm.116761 NM_007608 ENSMUSG00000025317 Car5a CAV|Ca5a|Car5 - 8 E1|8 70.81 cM carbonic anhydrase 5a, mitochondrial protein-coding 69260 Mm.430733 NM_023503 ENSMUSG00000063049 Ing2 2810011M06Rik|Ing1l|Ing2b|P33ING2 - 8|8 B1.1 inhibitor of growth family, member 2 protein-coding 102467269 n-TCgca7 n-Tc7 - 6 B2.3|6 nuclear encoded tRNA cysteine 7 (anticodon GCA) tRNA 105243465 XR_870942 Gm39380 - - 9 E1|9 predicted gene, 39380 ncRNA 14175 Mm.4956 NM_010202 ENSMUSG00000050917 Fgf4 Fgf-4|Fgfk|HBGF-4|Hst1|Hstf-1|KS3|hst|hst-1|kFGF - 7 F5|7 88.88 cM fibroblast growth factor 4 protein-coding 62614 D13Mit163 - - 13 11.11 cM DNA segment, Chr 13, Massachusetts Institute of Technology 163 unknown 259053 Mm.377810 NM_147051 ENSMUSG00000075377 Olfr362 MOR158-1 - 2|2 B olfactory receptor 362 protein-coding 492830 Bmd12 - - 12 2.94 cM bone mineral density 12 unknown 102632818 XR_385887 Gm30794 - - 17 E4|17 predicted gene, 30794 ncRNA 75954 Mm.258937 NR_040413 ENSMUSG00000106352 5033403H07Rik - - 5|5 C1 RIKEN cDNA 5033403H07 gene ncRNA 100416624 LOC100416624 - - 2|2 zinc finger protein 277 pseudogene pseudo 75705 Mm.290022 NM_145625 ENSMUSG00000058655 Eif4b 2310046H11Rik|AL024095|C85189|Eif4a2 - 15|15 F2 eukaryotic translation initiation factor 4B protein-coding 105246356 LOC105246356 - - 17 C non-histone chromosomal protein HMG-17 pseudogene pseudo 108489981 LOC108489981 - - - Nr5a1 5' regulatory region biological-region 107537 Ihe1 Ihe-1 - - intestinal helminth expulsion 1 protein-coding 53745 D0Tu8 D17Tu8 - - DNA segment, Tubingen 8 unknown 75429 Mm.296819 NM_029283 ENSMUSG00000049154 Fam183b 3100002J23Rik|Theg6 - 11|11 B1.3 family with sequence similarity 183, member B protein-coding 672490 Gm9563 - - 19|19 C1 cytokine induced apoptosis inhibitor 1 pseudogene pseudo 100042386 Gm3816 - - 7|7 A1 predicted gene 3816 pseudo 227800 Mm.383192 NM_146121 ENSMUSG00000035437 Rabgap1 Gapcena|mKIAA4104 - 2|2 B RAB GTPase activating protein 1 protein-coding 258951 Mm.377766 NM_146949 ENSMUSG00000094464 Olfr339 MOR136-3 - 2|2 B olfactory receptor 339 protein-coding 105243230 XR_878961 Gm39208 - - 8 C2|8 predicted gene, 39208 ncRNA 16991 Lt1 - - 6 C1|6 lurcher transcript 1 pseudo 18073 Mm.4691 NM_010917 ENSMUSG00000005397 Nid1 A630025O17|Nid|entactin|entactin-1|nidogen-1 - 13 A1|13 5.26 cM nidogen 1 protein-coding 102467431 n-TIaat9 n-Ti9 - 13 A3.1|13 nuclear encoded tRNA isoleucine 9 (anticodon AAT) tRNA 14154 Mm.290813 NM_010192 ENSMUSG00000043683 Fem1a AW611390|Fem1aa - 17 D|17 29.24 cM feminization 1 homolog a (C. elegans) protein-coding 62994 D12Mit279 - - 12 59.46 cM DNA segment, Chr 12, Massachusetts Institute of Technology 279 unknown 111390 Emv17 Emv-17 - - endogenous ecotropic MuLV 17 other 105246704 XR_878511 Gm41951 - - 1 E4|1 predicted gene, 41951 ncRNA 98417 Mm.38229 NM_030131 ENSMUSG00000062169 Cnih4 AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163 - 1|1 H4 cornichon family AMPA receptor auxiliary protein 4 protein-coding 100126251 Bpq23 Bpq12 - - blood pressure QTL 23 unknown 100417347 Gm18549 - - 16|16 C3.1 signal recognition particle 72 pseudogene pseudo 18643 Mm.2647 NM_011072 ENSMUSG00000018293 Pfn1 Pfn - 11 B3|11 43.21 cM profilin 1 protein-coding 100418183 Gm19060 - - 5|5 C3.3 predicted gene, 19060 pseudo 192976 Mm.339972 NM_198861 ENSMUSG00000046417 Lrrc75a Fam211a - 11|11 B2 leucine rich repeat containing 75A protein-coding 18479 Mm.260227 NM_011035 ENSMUSG00000030774 Pak1 AW045634|PAK-1|Paka - 7 E1|7 53.57 cM p21 (RAC1) activated kinase 1 protein-coding 231002 Mm.423124 NM_001008233 ENSMUSG00000078485 Plekhn1 BC025458 - 4|4 E2 pleckstrin homology domain containing, family N member 1 protein-coding 102631902 XR_877196 Gm30119 - - 18 A1|18 predicted gene, 30119 ncRNA 328945 Mm.447509 B930099G20 - - 18|18 B3 uncharacterized protein B930099G20 protein-coding 22682 Mm.292405 NM_009551 ENSMUSG00000024750 Zfand5 2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216 - 19 B|19 14.32 cM zinc finger, AN1-type domain 5 protein-coding 100035128 Aaj3 - - - anxiety in A/J 3 unknown 102635803 XR_389343 Gm33050 - - 5 E3|5 predicted gene, 33050 ncRNA 14396 Mm.102286 NM_008067 ENSMUSG00000031343 Gabra3 Gabra-3 - X A7.3|X 37.24 cM gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3 protein-coding 100312531 Vmn1r-ps38 - - 6 E1|6 vomeronasal 1 receptor, pseudogene 38 pseudo 102632916 Gm30868 - - 13|13 predicted gene, 30868 ncRNA 85104 D1Mit499 - - 1 62.56 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 499 unknown 21756 Mm.14418 NM_009356 ENSMUSG00000037529 Prss40 Tesp2 - 1|1 B protease, serine 40 protein-coding 78800 Mm.410772 NR_045463 ENSMUSG00000090160 4930480K15Rik - - 17|17 E5 RIKEN cDNA 4930480K15 gene ncRNA 402733 Mm.184971 A930009L07Rik - - 15|15 RIKEN cDNA A930009L07 gene protein-coding 667199 Mm.480261 NM_001166739 ENSMUSG00000095758 Vmn1r128 EG667199|Gm8509 - 7|7 A3 vomeronasal 1 receptor 128 protein-coding 62154 D14Mit31 - - 14 33.34 cM DNA segment, Chr 14, Massachusetts Institute of Technology 31 unknown 108168734 Mm.440000 NR_151490 2900093K20Rik - - 2|2 H3 RIKEN cDNA 2900093K20 gene ncRNA 102635333 XR_387214 Gm32700 - - 1 C5|1 predicted gene, 32700 ncRNA 102632716 XR_388061 Gm30712 - - 8 E1|8 predicted gene, 30712 ncRNA 100035883 Bntq1 - - - bone traits QTL 1 unknown 105242720 XR_869273 Gm38862 - - 6 D1|6 predicted gene, 38862 ncRNA 434825 Mm.447373 NR_040285 ENSMUSG00000085568 Gm14858 - - X|X D predicted gene 14858 ncRNA 100041264 XM_001476548 ENSMUSG00000096066 Gm10424 - - 5|5 E3 predicted gene 10424 protein-coding 67580 Mm.46115 NM_026253 ENSMUSG00000041673 Lrrc18 4930442L21Rik|MTLR1 - 14|14 B leucine rich repeat containing 18 protein-coding 104367 Mm.250030 NR_002898 ENSMUSG00000065124 Snora65 MBII-351|Rnu65 - 2|2 B small nucleolar RNA, H/ACA box 65 snoRNA 54352 Mm.101153 NM_018826 ENSMUSG00000031737 Irx5 - - 8 C5|8 44.93 cM Iroquois homeobox 5 protein-coding 102632652 XM_011243104 Gm30674 - - 10 A1|10 predicted gene, 30674 pseudo 101056195 Gm28461 - - Y|Y predicted gene 28461 protein-coding 20014 Mm.22130 NM_019642 ENSMUSG00000027642 Rpn2 1300012C06Rik|AV261018|Rpn-2 - 2 H1|2 78.2 cM ribophorin II protein-coding 105246825 Mm.27943 Gm42049 - - 8|8 predicted gene, 42049 protein-coding 108167924 XR_001780315 Gm11613 - - 11 D|11 61.04 cM predicted gene 11613 ncRNA 108167859 LOC108167859 - - 11 B5 40S ribosomal protein SA-like pseudo 108169121 XR_001785053 Gm46945 - - 5 C3.1|5 predicted gene, 46945 ncRNA 67741 Mm.383221 NM_001163385 ENSMUSG00000012042 4930579F01Rik - - 3|3 G3 RIKEN cDNA 4930579F01 gene protein-coding 243612 Mm.122653 NM_175525 ENSMUSG00000034387 Ssu2 D630042P16Rik|Fls485|Ssuh2 - 6|6 E3 ssu-2 homolog (C. elegans) protein-coding 623731 Gm6447 EG623731 - X|X F2 ribosomal RNA processing 15 homolog pseudogene pseudo 100504133 Gm20079 - - 12|12 52.29 cM cytochrome c oxidase subunit 7C, mitochondrial-like pseudo 17259 Mm.432505 NM_008578 ENSMUSG00000079033 Mef2b AI451606 - 8 B3.3|8 34.15 cM myocyte enhancer factor 2B protein-coding 237313 Mm.234667 NM_172786 ENSMUSG00000020007 Il20ra E230031K19 - 10|10 A3 interleukin 20 receptor, alpha protein-coding 108167841 XR_001779881 LOC108167841 - - 1 H4 uncharacterized LOC108167841 ncRNA 103117 AA591064 - - - expressed sequence AA591064 unknown 17200 Mm.426053 NM_008560 ENSMUSG00000045569 Mc2r ACTH-R|ACTHR|MC2-R - 18 E2|18 41.89 cM melanocortin 2 receptor protein-coding 61208 D1Mit168 - - 1 5.1 cM DNA segment, Chr 1, Massachusetts Institute of Technology 168 unknown 69776 Mm.120470 NR_040484 ENSMUSG00000086899 1600002D24Rik - - 16|16 C4 RIKEN cDNA 1600002D24 gene ncRNA 102634086 XR_373910 Gm31753 - - 1 H6|1 predicted gene, 31753 ncRNA 100384873 Gm11760 - - 4 C3|4 36.06 cM ribosomal protein L7A pseudogene pseudo 109498 Alcp11 - - - alcohol preference locus 11, male specific unknown 111196 Gm20551 Rpl36a-rs8 - 11 A1|11 6.16 cM ribosomal protein L36a, related sequence 8 pseudo 359852 DXMgc2 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 2 unknown 102635032 XR_375895 Gm32471 - - 3 F2.2|3 predicted gene, 32471 ncRNA 319423 D930031A20Rik - - 7|7 F3 RIKEN cDNA D930031A20 gene unknown 22141 Mm.439722 NM_021885 ENSMUSG00000031028 Tub rd5|tub - 7 E3|7 57.21 cM tubby bipartite transcription factor protein-coding 319264 Mm.249752 A130006I12Rik - - 2|2 A3 RIKEN cDNA A130006I12 gene unknown 100502734 Mm.306018 NR_040441 ENSMUSG00000086682 Gm16023 - - 4 E2|4 86.65 cM predicted gene 16023 ncRNA 102638570 XR_381274 Gm35104 - - 12 A1.1|12 predicted gene, 35104 ncRNA 217601 Mm.488987 NR_131112 BC042761 - - 12|12 C1 cDNA sequence BC042761 ncRNA 791076 NR_030434 ENSMUSG00000076448 Mir763 Mirn763|mir-763|mmu-mir-763 - 10 D2|10 microRNA 763 ncRNA 407813 Mm.23240 BC059841 - - - cDNA sequence BC059841 protein-coding 107448 Mm.23573 NM_153131 ENSMUSG00000025876 Unc5a Unc5h1|mKIAA1976 - 13|13 B1 unc-5 netrin receptor A protein-coding 93960 Mm.30219 NM_027280 ENSMUSG00000031661 Nkd1 2810434J10Rik|9030215G15Rik|Nkd - 8|8 C3 naked cuticle 1 protein-coding 100093667 Trnay-gua - - - transfer RNA tyrosine (anticodon GUA) tRNA 102467318 n-TGtcc7 n-Tg26 - 3 F2.1|3 nuclear encoded tRNA glycine 7 (anticodon TCC) tRNA 113849 Mm.435482 NM_053222 ENSMUSG00000060816 Vmn1r52 V1ra7|VN3 - 6|6 D1 vomeronasal 1 receptor 52 protein-coding 80384 Mm.78551 NM_019784 ENSMUSG00000021056 Tex21 4931406F04Rik|4931412D23Rik|4931421K24Rik|tsec-2 - 12|12 C3 testis expressed gene 21 protein-coding 223843 Mm.152937 NM_207533 ENSMUSG00000045608 Dbx2 9430056A22Rik|9630005K15|AI846217|Gm1229 - 15 E3|15 50.47 cM developing brain homeobox 2 protein-coding 108167415 XM_017312419 Gm45978 - - 7 B1|7 predicted gene, 45978 protein-coding 667596 Trav13d-3 - - 14|14 C2 T cell receptor alpha variable 13D-3 other 66691 Mm.156452 NM_025709 ENSMUSG00000026867 Gapvd1 2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521 - 2|2 B GTPase activating protein and VPS9 domains 1 protein-coding 105964 AU019754 - - - expressed sequence AU019754 protein-coding 12832 Mm.10299 NM_007737 ENSMUSG00000026042 Col5a2 1110014L14Rik - 1|1 C1.1 collagen, type V, alpha 2 protein-coding 245631 Mm.131001 NM_175541 ENSMUSG00000042515 Mum1l1 9430086K21Rik - X|X F1 melanoma associated antigen (mutated) 1-like 1 protein-coding 109717 Pol6 Pol-6 - - viral polymerase 6 protein-coding 105245378 Gm40844 - - 13|13 predicted gene, 40844 ncRNA 106309 AU015336 - - - expressed sequence AU015336 protein-coding 102467345 n-TKctt11 n-Tk11 - 13 A3.1|13 nuclear encoded tRNA lysine 11 (anticodon CTT) tRNA 66197 Mm.222228 NM_025415 ENSMUSG00000062248 Cks2 1110038L14Rik|CKSHS2 - 13|13 A5 CDC28 protein kinase regulatory subunit 2 protein-coding 104105 Ath7 - - 12|12 atherosclerosis 7 protein-coding 67865 Mm.18635 NM_026418 ENSMUSG00000030844 Rgs10 2310010N19Rik - 7|7 F3 regulator of G-protein signalling 10 protein-coding 62210 D16Mit38 - - 16 28.16 cM DNA segment, Chr 16, Massachusetts Institute of Technology 38 unknown 100862114 XM_017318711 Gm21489 - - Y C2|Y predicted gene, 21489 protein-coding 13249 Del(1)3H Del3H|Pax3|Sp-3H - - deletion, Chr 1, Harwell 3 other 83762 Mm.244502 NM_031875 ENSMUSG00000062372 Otof - - 5|5 B1 otoferlin protein-coding 17628 Ms5 MMS5 - - minisatellites detected by probe MMS5 other 75789 Mm.159571 NR_045660 ENSMUSG00000097172 4930444M15Rik - - 14|14 D3 RIKEN cDNA 4930444M15 gene ncRNA 102638701 XR_378743 Gm16350 - - 8 A1.1|8 7.59 cM predicted gene 16350 ncRNA 102639704 Gm35955 - - Y|Y predicted gene, 35955 ncRNA 102639281 Gm35629 - - 8 A4|8 predicted gene, 35629 pseudo 113870 Vmn1r-ps26 V1r-ps2 - 6|6 D1 vomeronasal 1 receptor, pseudogene 26 pseudo 105247294 XR_882356 LOC105247294 - - - uncharacterized LOC105247294 ncRNA 26394 Mm.34302 NM_011942 ENSMUSG00000028670 Lypla2 LysoII - 4|4 D3 lysophospholipase 2 protein-coding 109454 Hpic4 - - - haloperidol induced catalepsy 4 unknown 102640006 XR_387277 Gm36184 - - 1 D|1 predicted gene, 36184 ncRNA 100043189 Mm.426329 NR_045294 Gm4285 - - 14 D3|14 predicted gene 4285 ncRNA 102635642 XM_011239913 Gm32929 - - 2 E5|2 predicted gene, 32929 protein-coding 18506 Mm.8026 NM_011038 ENSMUSG00000029706 Pax4 Pax-4 - 6 A3.3|6 11.99 cM paired box 4 protein-coding 20757 Sprr2c-ps Sprr2c - 3 F1|3 40.14 cM small proline-rich protein 2C, pseudogene pseudo 26970 Mm.296007 NM_012044 ENSMUSG00000028751 Pla2g2e - - 4|4 D3 phospholipase A2, group IIE protein-coding 114668 Mm.379303 NR_033600 ENSMUSG00000102185 5033404E19Rik - - 1|1 H5 NSA2 ribosome biogenesis homolog pseudogene pseudo 102405 AA511254 - - - expressed sequence AA511254 protein-coding 68142 Mm.330496 NM_026574 ENSMUSG00000034154 Ino80 2310079N15Rik|4632409L19Rik|Inoc1 - 2|2 E5 INO80 complex subunit protein-coding 78010 Mm.243830 4930465I24Rik - - 8|8 RIKEN cDNA 4930465I24 gene protein-coding 71883 Mm.260661 NM_027978 ENSMUSG00000029319 Coq2 2310002F18Rik|PHB:PPT - 5|5 E4 coenzyme Q2 4-hydroxybenzoate polyprenyltransferase protein-coding 252908 NM_145846 Vmn1r190-ps V1ri8|Vmn1r190 - 13|13 A3.1 vomeronasal 1 receptor 190, pseudogene pseudo 105246977 Gm42165 - - 5|5 predicted gene, 42165 protein-coding 69499 Mm.8142 NM_175146 ENSMUSG00000025264 Tsr2 2310007F12Rik - X|X F3 TSR2 20S rRNA accumulation protein-coding 100041966 Gm20894 - - Y|Y predicted gene, 20894 protein-coding 111340 Ms15-8 - - - minisatellite 15-8 other 27600 D0Dcr7 - - - DNA segment, Derry C. Roopenian 7 unknown 62090 D10Mit97 - - 10 50.4 cM DNA segment, Chr 10, Massachusetts Institute of Technology 97 unknown 69773 Mm.39704 NM_178619 ENSMUSG00000048429 Timm29 1810026J23Rik|TIM29 - 9|9 A3 translocase of inner mitochondrial membrane 29 protein-coding 100036247 Vtbt14 - - 12 60.56 cM vertebral trabecular bone trait 14 unknown 243867 Mm.230830 NM_175530 ENSMUSG00000050428 Fbxo46 20D7-FC4|4932704E22Rik|Fbxo34l - 7|7 A3 F-box protein 46 protein-coding 628480 Gm6884 EG628480 - 10|10 A4 proteasome (prosome, macropain) subunit, beta type 3 pseudogene pseudo 102633633 XR_380505 Gm31416 - - 10 B5.1|10 predicted gene, 31416 ncRNA 105243003 XR_869806 Gm39053 - - 7 E1|7 predicted gene, 39053 ncRNA 435599 Gm5693 EG435599 - 19|19 C3 predicted gene 5693 pseudo 15192 Mm.7411 NM_008232 ENSMUSG00000045835 Hdgfl1 4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1 - 13|13 A3.1 hepatoma derived growth factor-like 1 protein-coding 97870 C78810 - - - expressed sequence C78810 unknown 105243491 XR_880236 Gm39396 - - 11 E1|11 predicted gene, 39396 ncRNA 13854 Mm.3091 NM_010147 ENSMUSG00000035203 Epn1 AA269831|Ibp1 - 7|7 A1 epsin 1 protein-coding 100417232 Gm18471 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 102467421 n-TRcct3 n-Tr12 - 11 E2|11 nuclear encoded tRNA arginine 3 (anticodon CCT) tRNA 67715 Mm.45323 NM_026333 ENSMUSG00000025528 2010106E10Rik - - X|X E1 RIKEN cDNA 2010106E10 gene protein-coding 114170 Etohcta4 - - - ethanol conditioned taste aversion 4 unknown 11480 Mm.314338 NM_007396 ENSMUSG00000052155 Acvr2a ActrIIa|Acvr2|TactrII - 2 C1.1|2 28.38 cM activin receptor IIA protein-coding 100416230 Gm17986 - - 7|7 F2 ribosomal protein S9 pseudogene pseudo 102636483 XR_385789 Gm33538 - - 17 E3|17 predicted gene, 33538 ncRNA 320512 D930014O13Rik - - 6|6 RIKEN cDNA D930014O13 gene protein-coding 102637507 XM_006514426 Gm34298 - - 10 D1|10 predicted gene, 34298 protein-coding 433390 Mm.331295 NR_151624 ENSMUSG00000103644 Gm29678 - - 1|1 H6 predicted gene, 29678 ncRNA 102635596 Gm32887 - - 3|3 predicted gene, 32887 ncRNA 68276 Mm.30534 NM_026654 ENSMUSG00000028688 Toe1 4930584N22Rik|4933424D16Rik|AI413517 - 4|4 D1 target of EGR1, member 1 (nuclear) protein-coding 667915 Gm8878 EG667915 - 17|17 B1 armadillo repeat containing, X-linked 5 pseudogene pseudo 665434 XR_001778784 Gm7634 EG665434 - 1|1 A3 predicted gene 7634 unknown 258764 Mm.377680 NM_146768 ENSMUSG00000075168 Olfr1099 MOR206-3 - 2|2 D olfactory receptor 1099 protein-coding 102639275 XR_388607 Gm35624 - - 11 B1.1|11 predicted gene, 35624 ncRNA 105244698 XR_868199 1700108I11Rik - - 4|4 D2.2 RIKEN cDNA 1700108I11 gene ncRNA 244682 Mm.187021 NM_001033359 ENSMUSG00000039488 Cntn5 6720426O10Rik|A830025P08Rik|Gm507|NB-2 - 9|9 A1 contactin 5 protein-coding 628681 Gm6903 - - 16|16 B5 TNF receptor associated factor 4 pseudogene pseudo 75990 Mm.410963 XR_872469 5033421B08Rik - - 12|12 A1.1 RIKEN cDNA 5033421B08 gene ncRNA 100416173 Gm13406 - - 2|2 B ribosomal protein S7 pseudogene pseudo 171268 Mm.377220 NM_134234 ENSMUSG00000058132 Vmn1r82 V1rg12 - 7|7 A1 vomeronasal 1 receptor 82 protein-coding 360046 D17Jcs97 - - - DNA segment, Chr 17, John C. Schimenti 97 unknown 100040507 Mm.415120 XR_378711 Gm2814 Gm45043 - 8 A1.1|8 predicted gene 2814 protein-coding 257950 Mm.377312 NM_001011784 ENSMUSG00000075204 Olfr1039 MOR185-5|MOR185-9P|Olfr1517 - 2|2 D olfactory receptor 1039 protein-coding 70733 Mm.404138 6330411E07Rik - - 18|18 RIKEN cDNA 6330411E07 gene protein-coding 114479 Mm.172923 NM_053248 ENSMUSG00000000792 Slc5a5 NIS - 8|8 B3.3 solute carrier family 5 (sodium iodide symporter), member 5 protein-coding 111929 Iap3rb18 - - - intracisternal A-type particle, U3 region, SINE repeat b-18 other 108169165 Gm44173 - - 6 F1|6 thymosin beta-10 pseudogene pseudo 17233 Mcptl MMCP-L - 14 C2|14 mast cell protease-like protein-coding 112163574 AA387440 - - - expressed sequence AA387440 protein-coding 100039174 Gm10273 - - 10|10 B4 translocase of inner mitochondrial membrane 23 homolog pseudogene pseudo 52419 D7Ertd783e - - 7 44.84 cM DNA segment, Chr 7, ERATO Doi 783, expressed unknown 668238 Gm9060 EG668238 - X|X C3 NSA2 ribosome biogenesis homolog pseudogene pseudo 75497 Mm.47052 NM_029310 ENSMUSG00000027530 Fabp12 1700008G05Rik - 3|3 A1 fatty acid binding protein 12 protein-coding 69028 Mm.63984 NM_026913 ENSMUSG00000026088 Mitd1 1500032H18Rik - 1|1 B MIT, microtubule interacting and transport, domain containing 1 protein-coding 62506 D10Mit175 - - 10 39.72 cM DNA segment, Chr 10, Massachusetts Institute of Technology 175 unknown 102634333 Mm.45669 XM_006502554 ENSMUSG00000090066 1110002E22Rik 100039528|AI415341|Gm2292 - 3|3 G3 RIKEN cDNA 1110002E22 gene protein-coding 14165 Mm.317323 NM_008002 ENSMUSG00000021732 Fgf10 AEY17|BB213776|Fgf-10|Gsfaey17 - 13 D2.3|13 67.14 cM fibroblast growth factor 10 protein-coding 100503715 Gm19853 - - 17|17 61.26 cM signal recognition particle 19 kDa protein-like pseudo 102633126 Gm31032 - - 5|5 predicted gene, 31032 ncRNA 102640642 Astx3 Gm14961 - X|X 49.81 cM amplified spermatogenic transcripts X encoded 3 protein-coding 101055972 Gm29754 - - 7 A3|7 predicted gene, 29754 pseudo 109419 Mol1 - - - modifier of LPS-response 1 unknown 76022 Mm.126870 NM_027389 ENSMUSG00000054199 Gon4l 1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005 - 3|3 F1 gon-4-like (C.elegans) protein-coding 105243127 XR_870159 LOC105243127 - - 8 A1.1 uncharacterized LOC105243127 ncRNA 102638673 XR_375190 Gm35181 - - 2 H2|2 predicted gene, 35181 ncRNA 102633792 XR_881358 Gm31533 - - 4 C1|4 predicted gene, 31533 ncRNA 114347 Adip6 - - 12 44.05 cM adiposity 6 unknown 97613 Mm.436984 C85181 - - - expressed sequence C85181 unknown 60794 D3Mit66 - - 3 25.43 cM DNA segment, Chr 3, Massachusetts Institute of Technology 66 unknown 258782 Mm.390144 NM_146786 ENSMUSG00000047050 Olfr914 MOR165-7 - 9|9 A5.1 olfactory receptor 914 protein-coding 21041 T(10;13)3Ad T3Ad - - reciprocal translocation, Chr 10 and 13, Adler 3 other 20273 Mm.385012 NM_011323 ENSMUSG00000023033 Scn8a AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal - 15 56.39 cM|15 F1 sodium channel, voltage-gated, type VIII, alpha protein-coding 68466 Mm.442571 1110003F02Rik - - 5|5 RIKEN cDNA 1110003F02 gene protein-coding 15414 Mm.215 NM_008269 ENSMUSG00000000690 Hoxb6 Hox-2.2 - 11 D|11 59.82 cM homeobox B6 protein-coding 70797 Mm.130148 NM_001003909 ENSMUSG00000040351 Ankib1 2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386 - 5|5 A1 ankyrin repeat and IBR domain containing 1 protein-coding 319450 Mm.246688 F830010H11Rik - - 6|6 RIKEN cDNA F830010H11 gene protein-coding 103975 Rn7s10 Rn7s-4b|Rn7s4b - - 7S RNA 10 scRNA 434423 Mm.139314 NM_025274 ENSMUSG00000060461 Dppa5a AA536857|Dppa5|Esg1|ecat2 - 9|9 E1 developmental pluripotency associated 5A protein-coding 100503252 Gm19612 - - 10|10 C1 transcriptional adaptor 2B pseudogene pseudo 258506 Mm.377542 NM_146513 ENSMUSG00000049561 Olfr95 MOR263-6 - 17|17 B1 olfactory receptor 95 protein-coding 105244203 XR_866454 Gm39853 - - 2 C3|2 predicted gene, 39853 ncRNA 98007 C76493 - - - expressed sequence C76493 unknown 622719 XM_011249641 Gm6346 EG622719 - 5|5 E3 predicted gene 6346 protein-coding 674419 Rpl7a-ps5 EG433128|Gm16375 - 17|17 D ribosomal protein L7A, pseudogene 5 pseudo 258519 Mm.491770 NM_146526 ENSMUSG00000095448 Olfr859 MOR146-3 - 9|9 A3 olfactory receptor 859 protein-coding 83885 Mm.193029 NM_001159275 ENSMUSG00000050304 Slc25a2 Ornt2 - 18 B3|18 solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2 protein-coding 100043218 Mm.333502 Trav12n-1 Gm11046 - 14|14 C2 T cell receptor alpha variable 12N-1 other 100417974 Gm18928 - - 18|18 A1 integrin beta 1 (fibronectin receptor beta) pseudogene pseudo 14873 Mm.378931 NM_010362 ENSMUSG00000025068 Gsto1 AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28 - 19|19 D1 glutathione S-transferase omega 1 protein-coding 84704 Mm.274995 NM_033174 ENSMUSG00000102627 Snurf 2410045I01Rik - 7|7 B5 SNRPN upstream reading frame protein-coding 97719 C79646 - - - expressed sequence C79646 unknown 17872 Mm.4048 NM_008654 ENSMUSG00000040435 Ppp1r15a 9630030H21|Gadd34|Myd116 - 7|7 B3 protein phosphatase 1, regulatory (inhibitor) subunit 15A protein-coding 269336 Mm.292465 NM_199310 ENSMUSG00000039983 Ccdc32 Gm631 - 2|2 E5 coiled-coil domain containing 32 protein-coding 105243816 LOC105243816 - - 13 D2.3 PHD finger-like domain-containing protein 5A pseudogene pseudo 666056 Gm7910 EG666056 - 1|1 B voltage-dependent anion channel 1 pseudogene pseudo 26359 Mm.42179 NM_011922 ENSMUSG00000031635 Anxa10 - - 8 B3.1|8 31.55 cM annexin A10 protein-coding 62954 D12Mit256 - - 12 39.81 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 256 unknown 26565 Mm.4214 NM_011987 ENSMUSG00000022683 Pla2g10 GX sPLA2|PLA2GX|sPLA2-X - 16 A1|16 9.5 cM phospholipase A2, group X protein-coding 105245771 XR_874677 Gm41167 - - 14 D1|14 predicted gene, 41167 ncRNA 100418059 Gm18973 - - 7|7 A1 hematological and neurological expressed 1-like pseudogene pseudo 100861968 Gm21362 - - 1 H6|1 predicted gene, 21362 pseudo 109402 Bmd2 - - 5 30.56 cM bone mineral density 2 unknown 385568 Gm20739 - - Y|Y A1 predicted gene, 20739 pseudo 27695 D13Rp3 - - - DNA segment, Chr 13, Roswell Park 3 unknown 102636691 XR_378865 ENSMUSG00000100605 Gm29243 - - 8 A4|8 predicted gene 29243 ncRNA 74335 Mm.19082 NM_028875 ENSMUSG00000021287 Xrcc3 - - 12|12 F1 X-ray repair complementing defective repair in Chinese hamster cells 3 protein-coding 105246606 XR_877961 Gm41874 - - 19 D2|19 predicted gene, 41874 ncRNA 217786 Gm4808 EG217786 - 12|12 D3 predicted gene 4808 pseudo 100035432 Hfem4 - - - Hfe modifier 4 unknown 77302 9430078K10Rik - - 18|18 RIKEN cDNA 9430078K10 gene protein-coding 78297 0610008J02Rik - - - RIKEN cDNA 0610008J02 gene protein-coding 75402 0610042B23Rik - - 8|8 RIKEN cDNA 0610042B23 gene protein-coding 71334 Mm.461516 5430416G10Rik - - 18|18 RIKEN cDNA 5430416G10 gene protein-coding 319485 D930043O14Rik - - 14|14 RIKEN cDNA D930043O14 gene protein-coding 102633068 XR_877094 Gm30984 - - 17 E4|17 predicted gene, 30984 ncRNA 259091 Mm.377835 NM_147087 ENSMUSG00000078080 Olfr585 MOR14-4 - 7|7 E3 olfactory receptor 585 protein-coding 666457 Mm.387988 XR_001779575 G370120E05Rik EG666457 - 1|1 H4 RIKEN cDNA G370120E05 gene ncRNA 493080 Pcyts2 - - 4 20.0 cM plasmacytoma susceptibility 2 unknown 100417886 Gm18881 - - 13|13 A3.1 lysophosphatidylcholine acyltransferase 4 pseudogene pseudo 66143 Mm.490319 NM_025380 ENSMUSG00000001707 Eef1e1 1110003A02Rik - 13|13 A3.3 eukaryotic translation elongation factor 1 epsilon 1 protein-coding 93734 Mm.76554 NM_033564 ENSMUSG00000022679 Mpv17l M-LP - 16|16 A1 Mpv17 transgene, kidney disease mutant-like protein-coding 319551 Mm.210401 XR_105173 ENSMUSG00000109898 6330420H09Rik - - 7|7 F3 RIKEN cDNA 6330420H09 gene ncRNA 100504458 Gm12367 - - 4|4 17.17 cM predicted gene 12367 protein-coding 54197 Mm.274542 NM_019403 ENSMUSG00000015478 Rnf5 2410131O05Rik|AA407576|NG2 - 17 B1|17 18.18 cM ring finger protein 5 protein-coding 105245552 XR_873649 Gm40996 - - 13 C1|13 predicted gene, 40996 ncRNA 62520 D11Mit132 - - 11 62.92 cM DNA segment, Chr 11, Massachusetts Institute of Technology 132 unknown 18080 Mm.244047 NM_008697 ENSMUSG00000021068 Nin 3110068G20Rik|AI385615|AU024711|mKIAA1565 - 12|12 C2 ninein protein-coding 246084 Mm.219547 NM_139224 ENSMUSG00000058052 Defb35 BD-35 - 8|8 A2 defensin beta 35 protein-coding 383490 Gm5250 EG383490|Gm16393 - 1|1 A3 developmental pluripotency associated 5A pseudogene pseudo 780823 Ighv12-1 - - 12|12 F1 immunoglobulin heavy variable V12-1 pseudo 116837 Mm.60061 NM_053270 ENSMUSG00000041670 Rims1 C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1 - 1|1 A5 regulating synaptic membrane exocytosis 1 protein-coding 111141 Zfp82-rs2 - - - zinc finger protein 82, related sequence 2 pseudo 243979 Mm.83689 NM_175531 ENSMUSG00000050425 Mrgprb2 4833406I20Rik|Mgrg14 - 7|7 B4 MAS-related GPR, member B2 protein-coding 170461 Mm.83623 NM_029019 ENSMUSG00000079608 Stard6 1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424 - 18 E2|18 44.44 cM StAR-related lipid transfer (START) domain containing 6 protein-coding 61600 D9Mit270 - - 9 42.48 cM DNA segment, Chr 9, Massachusetts Institute of Technology 270 unknown 170651 Mm.196827 NM_130870 ENSMUSG00000057650 Krtap19-2 Krtap16-1 - 16|16 C3.3 keratin associated protein 19-2 protein-coding 240755 Mm.67133 NM_173771 ENSMUSG00000050526 4933406M09Rik - - 1|1 E4 RIKEN cDNA 4933406M09 gene protein-coding 639390 BC094435 - - 1|18 cDNA sequence BC094435 other 16031 Igh-Ia Igh2 - 12|12 immunoglobulin heavy chain Ia other 85178 D14Mit77 - - 14 64.72 cM DNA segment, Chr 14, Massachusetts Institute of Technology 77 unknown 100504598 Gm20305 - - 1|1 84.46 cM predicted gene, 20305 protein-coding 110368 Tcrd-V3 - - - T cell receptor delta, variable 3 other 61287 D2Mit275 - - 2 57.82 cM DNA segment, Chr 2, Massachusetts Institute of Technology 275 unknown 74863 4930447C11Rik Gm44047 - 6|6 RIKEN cDNA 4930447C11 gene protein-coding 50524 Mm.39487 NM_015772 ENSMUSG00000049532 Sall2 AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2) - 14|14 C2 spalt like transcription factor 2 protein-coding 21320 T(X;7)2Rl T2Rl - - reciprocal translocation, Chr X and 7, Russell 2 other 71872 Mm.244525 NM_023631 ENSMUSG00000038242 Aox4 2310003G12Rik|Aoh2 - 1 C1.3|1 28.97 cM aldehyde oxidase 4 protein-coding 75117 Mm.429393 NR_130984 4930517M08Rik - - 17 A1|17 RIKEN cDNA 4930517M08 gene ncRNA 240752 Mm.387308 NM_001099276 ENSMUSG00000026447 Pik3c2b C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta - 1|1 E4 phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta protein-coding 100035503 Fatmq2 Fatq2 - - total fat pad mass QTL 2 unknown 102636408 XR_386708 Gm33482 - - 19 C3|19 predicted gene, 33482 ncRNA 61191 D1Mit108 - - 1 71.57 cM DNA segment, Chr 1, Massachusetts Institute of Technology 108 unknown 100093641 Trnal-cag - - - transfer RNA leucine (anticodon CAG) tRNA 114325 Pas13 - - 19 39.37 cM pulmonary adenoma susceptibility 13 unknown 243085 Mm.312095 NM_172881 ENSMUSG00000035811 Ugt2b35 C730031G17 - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide B35 protein-coding 102635453 XR_378623 Gm32786 Gm45377 - 7 F5|7 predicted gene, 32786 ncRNA 105244453 XR_867326 Gm40059 - - 3 D|3 predicted gene, 40059 ncRNA 100312528 Vmn1r-ps98 - - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 98 pseudo 100035892 Pbmd4 - - 11 33.29 cM peak bone mineral density 4 unknown 100379095 Mm.213599 XR_389623 A830092H15Rik - - 3 A3|3 10.73 cM RIKEN cDNA A830092H15 gene unknown 100861806 Gm21232 - - 13|13 predicted gene, 21232 pseudo 100302648 Mm.458664 NR_045708 ENSMUSG00000084941 Gm11944 - - 11|11 A1 predicted gene 11944 ncRNA 61127 D5Mit391 - - 5 24.24 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 391 unknown 170646 Noa - - - Naruto Otsuka atrichia unknown 22715 Mm.305561 NM_009559 ENSMUSG00000036036 Zfp57 G19|Zfp-57 - 17 B1|17 zinc finger protein 57 protein-coding 67407 Mm.426142 NM_026134 ENSMUSG00000073001 Cylc1 4930401M13Rik - X|X E1 cylicin, basic protein of sperm head cytoskeleton 1 protein-coding 102639033 XR_377335 Gm35446 - - 6 A1|6 predicted gene, 35446 ncRNA 381157 Mm.261535 NM_001083628 ENSMUSG00000042942 Greb1l mKIAA4095 - 18|18 A1 growth regulation by estrogen in breast cancer-like protein-coding 81913 Mm.122640 NR_027919 Bambi-ps1 - - 2|2 E5 BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis) pseudo 108031 Cor - - - distribution of corticosterone in adrenal cortex cells unknown 12805 Mm.4911 NM_007727 ENSMUSG00000055022 Cntn1 AW495098|CNTN|F3cam|usl - 15 E3|15 46.39 cM contactin 1 protein-coding 632302 Cyp21a2-ps 21OHB|Cyp21-ps1|Cyp21B|Cyp21a2-ps1|Cyp21a2ps|EG632302|Oh21-2 - 17 B1|17 cytochrome P450, family 21, subfamily a, polypeptide 2 pseudogene pseudo 76371 Mm.440905 XR_001780978 2810408B13Rik - - 13 B3|13 RIKEN cDNA 2810408B13 gene unknown 52431 D9Ertd815e - - 9 32.01 cM DNA segment, Chr 9, ERATO Doi 815, expressed unknown 97440 Mm.489600 NM_178879 ENSMUSG00000069920 B3gnt9 3-Gn-T9|B3gnt9-ps|BGnT-9|C76565|C76566|beta-1|beta3Gn-T9 - 8|8 D3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 protein-coding 11842 Mm.221298 NM_007478 ENSMUSG00000051853 Arf3 5430400P17Rik|AI854770 - 15|15 F1 ADP-ribosylation factor 3 protein-coding 19248 Mm.319117 NM_011203 ENSMUSG00000028771 Ptpn12 P19-PTP|PTP-P19|PTP-PEST|PTPG1 - 5|5 A3 protein tyrosine phosphatase, non-receptor type 12 protein-coding 113859 Mm.377156 NM_053232 ENSMUSG00000091734 Vmn1r29 V1rc2 - 6|6 B3 vomeronasal 1 receptor 29 protein-coding 100499521 NR_037304 ENSMUSG00000092880 Mir3471-1 mmu-mir-3471-1 - 4 A1|4 4.83 cM microRNA 3471-1 ncRNA 13924 Mm.4450 NM_007955 Ptprv Esp|OST|OST-PTP - 1|1 E4 protein tyrosine phosphatase, receptor type, V protein-coding 243634 Mm.333398 NM_153589 ENSMUSG00000038115 Ano2 BC033409|Tmem16b - 6|6 F3 anoctamin 2 protein-coding 61673 D6Mit295 - - 6 77.7 cM DNA segment, Chr 6, Massachusetts Institute of Technology 295 unknown 241391 Mm.484118 NM_172855 ENSMUSG00000026828 Galnt5 4832424J23 - 2|2 C1.1 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 100416237 Gm17992 - - 7|7 E3 selenocysteine lyase pseudogene pseudo 13831 Mm.312133 NM_007935 ENSMUSG00000024240 Epc1 2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893 - 18|18 A1 enhancer of polycomb homolog 1 protein-coding 100035541 Cfld4 - - 7 63.78 cM cystic fibrosis lung disease 4 unknown 192197 Mm.209989 NM_138681 ENSMUSG00000059439 Bcas3 1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira - 11|11 C breast carcinoma amplified sequence 3 protein-coding 66235 Mm.294623 NM_025437 ENSMUSG00000067194 Eif1ax 1500010B24Rik|AI426898|Eif1ay|eIF-4C - X|X F4 eukaryotic translation initiation factor 1A, X-linked protein-coding 102631956 Gm30155 - - 13 C3|13 predicted gene, 30155 pseudo 28092 DYzEms8 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 8 unknown 100038390 Mm.22776 G730046D07Rik - - - RIKEN cDNA G730046D07 gene protein-coding 234129 Mm.450553 NM_181851 ENSMUSG00000031481 Tpte Pten2 - 8|8 A2 transmembrane phosphatase with tensin homology protein-coding 100379214 Gm16533 - - 1 A4|1 6.64 cM KH domain containing 1 pseudogene pseudo 51835 D2Ggc3e - - - DNA segment, Chr 2, G. Consalez 3, expressed unknown 112036 Lwq5 - - - liver weight QTL 5 unknown 105246584 Gm41855 - - 19|19 predicted gene, 41855 ncRNA 234734 Mm.24174 NM_146217 ENSMUSG00000031960 Aars AI316495|C76919|sti - 8|8 E1 alanyl-tRNA synthetase protein-coding 100043734 Gm16409 EG629575 - 14|14 D3 ribosomal protein S6 pseudogene pseudo 100316679 NR_035433 ENSMUSG00000104797 Mir1897 Mirn1897|mmu-mir-1897 - 3 A3|3 16.93 cM microRNA 1897 ncRNA 100418339 Gm19149 - - 3|3 H4 succinate dehydrogenase complex, subunit B, iron sulfur (Ip) pseudogene pseudo 53683 DYByu8 D0Byu8 - - DNA segment, Chr Y, Brigham Young University 8 unknown 77896 6720475M21Rik - - 5|5 C3.3 RIKEN cDNA 6720475M21 gene protein-coding 102636501 Gm28961 - - Y|Y predicted gene 28961 protein-coding 104253 Ad - - - adult obesity and diabetes unknown 27461 63G5L - - - DNA segment, 63G5L unknown 102633661 XR_379351 Gm31432 - - 9 A5.2-A5.3|9 predicted gene, 31432 ncRNA 100035578 Hrq4 - - - heart rate QTL 4 unknown 74517 Mm.390001 NR_046272 ENSMUSG00000109915 7420700N18Rik - - 8|8 A3 RIKEN cDNA 7420700N18 gene ncRNA 100502923 Mm.44078 XR_104764 ENSMUSG00000097514 Gm17619 - - 2 H3|2 90.42 cM predicted gene, 17619 ncRNA 107484 Av2 Av-2 - - Abelson virus susceptibility 2 unknown 108168639 XM_017318847 LOC108168639 - - Y C1 X-linked lymphocyte-regulated protein PM1-like protein-coding 69214 2610021J01Rik - - - RIKEN cDNA 2610021J01 gene protein-coding 52004 Mm.29609 NM_026373 ENSMUSG00000024856 Cdk2ap2 5830466O21Rik|D19Ertd144e|Doc-1r - 19|19 A CDK2-associated protein 2 protein-coding 19289 Mm.41529 NM_008988 ENSMUSG00000032394 Igdcc3 2810401C09Rik|AI851425|Punc|WI-14920 - 9 C|9 35.13 cM immunoglobulin superfamily, DCC subclass, member 3 protein-coding 111254 Icam1-rs1 - - - intercellular adhesion molecule 1, related sequence 1 pseudo 12489 Mm.140157 NM_021293 ENSMUSG00000004609 Cd33 Siglec-3|gp67 - 7 B3|7 28.25 cM CD33 antigen protein-coding 53105 Y95m5e3 - - - DNA segment, Y95m5e3 unknown 53046 CA7.10 - - - DNA segment, CA7.10 unknown 213320 Gm4782 EG213320 - 6|6 B2.3 Crn, crooked neck-like 1 pseudogene pseudo 328059 Mm.46326 NM_177802 ENSMUSG00000020600 Slc7a15 Arpat - 12|12 A1.1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 15 protein-coding 100416050 Gm38395 - - 3|3 F3 predicted pseudogene 38395 pseudo 102639419 XR_384210 Gm35739 - - 15 D3|15 predicted gene, 35739 ncRNA 100417264 Gm18490 - - 19|19 C3 DBF4 homolog pseudogene pseudo 493132 Hpcr1 Hcr1 - 4 50.04 cM hepatocarcinogen resistance 1 unknown 105243858 XR_865178 Gm39589 - - 1 A1|1 predicted gene, 39589 ncRNA 102637593 XM_006519909 Gm34362 - - 14 C1|14 predicted gene, 34362 protein-coding 110140 Rn18s-rs7 - - - 18s RNA, related sequence 7 rRNA 545545 Gm5851 EG545545 - 3|3 F1 ribosomal protein L3 pseudogene pseudo 100416317 Gm15843 - - 1|1 C3 ribosomal protein L17 pseudogene pseudo 102639668 Gm29169 - - Y|Y predicted gene 29169 ncRNA 105243932 XR_865449 Gm29018 - - 1 C1.3|1 predicted gene 29018 ncRNA 67049 Mm.425574 NM_023292 ENSMUSG00000032103 Pus3 2610020J05Rik|5730412F04Rik - 9|9 A4 pseudouridine synthase 3 protein-coding 102637144 Gm34028 - - 1|1 predicted gene, 34028 ncRNA 100038997 XM_011249648 Gm2003 - - X A2|X predicted pseudogene 2003 protein-coding 100125854 Sh2 - - - sperm hammerhead 2 unknown 110120532 LOC110120532 - - - VISTA enhancer mm1565 biological-region 111954 Iap3rc13 - - - intracisternal A-type particle, U3 region, SINE repeat c-13 other 73001 Mm.428647 NR_045177 ENSMUSG00000071860 2900055J20Rik - - 18|18 B3 RIKEN cDNA 2900055J20 gene ncRNA 102636596 Gm33615 - - 9|9 predicted gene, 33615 protein-coding 105245727 XR_874521 Gm41131 - - 14 B|14 predicted gene, 41131 ncRNA 62776 D16Mit143 - - 16 11.23 cM DNA segment, Chr 16, Massachusetts Institute of Technology 143 unknown 102637283 Mm.444675 XR_386616 Pip5k1bos 4930418C01Rik - 19|19 B phosphatidylinositol-4-phosphate 5-kinase, type 1 beta, opposite strand ncRNA 665294 Gm7573 EG665294|Oas1i - 5|5 F 2'-5' oligoadenylate synthetase 1 pseudogene pseudo 245440 Mm.379440 XM_006528355 Gm4988 EG245440 - X|X A6 predicted gene 4988 protein-coding 62967 D14Mit238 - - 14 39.45 cM DNA Segment, Chr 14, Massachusetts Institute of Technology 238 unknown 102466776 NR_105932 ENSMUSG00000098329 Mir6966 Gm27272|mmu-mir-6966 - 17|17 A3.3 microRNA 6966 ncRNA 102639748 Gm35987 - - 3|3 predicted gene, 35987 pseudo 108167352 XR_001779086 Gm45957 - - 9 A1|9 predicted gene, 45957 ncRNA 102993 AU022951 - - - expressed sequence AU022951 unknown 21665 Mm.284252 NM_011561 ENSMUSG00000034674 Tdg E130317C12Rik|JZA-3|Jza1 - 10 C1|10 39.72 cM thymine DNA glycosylase protein-coding 26558 Mm.388127 NM_011984 ENSMUSG00000003573 Homer3 AW146114 - 8|8 B3.3 homer scaffolding protein 3 protein-coding 18605 Mm.27254 NM_008813 ENSMUSG00000037370 Enpp1 4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy - 10 A4|10 12.26 cM ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 258043 Olfr326-ps1 MOR275-7P|MOR275-8_p - 11|11 B1.3 olfactory receptor 326, pseudogene 1 pseudo 70977 Mm.272787 NM_027631 ENSMUSG00000007907 Cabs1 4931407G18Rik|AI428159|Clph - 5|5 E1 calcium binding protein, spermatid specific 1 protein-coding 621699 Mm.384201 XR_001587 Gm6252 EG621699 - 19|19 A predicted gene 6252 unknown 242681 Mm.331927 NM_001081651 ENSMUSG00000089687 Rab42 9530096D07Rik|Rab42-ps - 4|4 D2.3 RAB42, member RAS oncogene family protein-coding 328861 Mm.45514 D430006K04 - - 17|17 E3 uncharacterized protein D430006K04 protein-coding 100036326 Imraq3 - - 16 36.36 cM immune response to AAV2 QTL 3 unknown 109420 Mol2 - - - modifier of LPS-response 2 unknown 78491 Mm.243766 NR_040588 ENSMUSG00000086745 Tspan2os 2410057H14Rik - 3|3 F2.2 tetraspanin 2, opposite strand ncRNA 666325 Gm12585 - - 4|4 B1 predicted gene 12585 pseudo 108167686 XR_001779309 Gm46133 - - 9 F3|9 predicted gene, 46133 ncRNA 246160 L1Md-Gf43 GF43 - - L1 repeat, Gf subfamily, member 43 other 105245022 XR_870960 Gm40536 - - 9 E2|9 predicted gene, 40536 ncRNA 13312 Del(5)25H Del25H - - deletion, Chr 5, Harwell 25 other 228998 Mm.33765 NM_145760 ENSMUSG00000027575 Arfgap1 AI115377|Arf1gap - 2 H4|2 103.53 cM ADP-ribosylation factor GTPase activating protein 1 protein-coding 100039940 Gm12715 - - 4|4 C6 actin, gamma, cytoplasmic 1 pseudogene pseudo 359932 DXMgc46 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 46 unknown 231014 Mm.130063 NM_172706 ENSMUSG00000056004 9330182L06Rik Eig121l - 5|5 A1 RIKEN cDNA 9330182L06 gene protein-coding 56354 Mm.402409 NM_019795 ENSMUSG00000014195 Dnajc7 2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2 - 11 D|11 63.47 cM DnaJ heat shock protein family (Hsp40) member C7 protein-coding 100861769 Gm21201 - - Y|Y predicted gene, 21201 protein-coding 97209 Mm.486611 XR_001784834 A230098N10Rik 100039369|C76950|Gm2188|Gm42806 - 5 B1|5 RIKEN cDNA A230098N10 gene unknown 75761 Mm.232636 NM_029419 ENSMUSG00000010601 Apol7a 9130022K13Rik|Apol3 - 15|15 D3 apolipoprotein L 7a protein-coding 108971 4930544C05Rik - - X|X RIKEN cDNA 4930544C05 gene protein-coding 105242468 LOC105242468 - - - Werner syndrome ATP-dependent helicase homolog protein-coding 667003 Gm11675 - - 11|11 E2 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) pseudogene pseudo 100503866 Mm.436763 XR_384655 Gm15558 - - 16 A1|16 5.74 cM predicted gene 15558 ncRNA 67384 Mm.118400 NM_026121 ENSMUSG00000037316 Bag4 2410112I15Rik|SODD - 8|8 A2 BCL2-associated athanogene 4 protein-coding 77215 Mm.462993 NM_023860 ENSMUSG00000046248 Krtap5-3 A030007E19Rik - 7|7 F5 keratin associated protein 5-3 protein-coding 546294 Mm.379498 NM_001145406 ENSMUSG00000080933 Rhox3g Rhox3.7|Rhox3f|Rhox3g-ps - X|X A3.3 reproductive homeobox 3G protein-coding 60837 D4Mit93 - - 4 16.05 cM DNA segment, Chr 4, Massachusetts Institute of Technology 93 unknown 627312 Gm11759 - - 2|2 G1 predicted gene 11759 pseudo 257883 Mm.278379 NM_001011737 ENSMUSG00000071185 Olfr1357 MOR128-3|MOR128-4 - 10|10 C1 olfactory receptor 1357 protein-coding 110599589 Mm.285783 NM_001353501 Asdurf ASNSD1-SEP - 1 C1.1 Asnsd1 upstream reading frame protein-coding 78081 Mm.319913 NM_030033 ENSMUSG00000025774 Crisp4 9230112K08Rik - 1|1 A3 cysteine-rich secretory protein 4 protein-coding 258400 Mm.357298 NM_146405 ENSMUSG00000111772 Olfr228 GA_x6K02T0101M-139-669|MOR189-3|Olfr228-ps1 - 2|2 D olfactory receptor 228 protein-coding 102465646 NR_106033 ENSMUSG00000099042 Mir7066 Gm27290|mmu-mir-7066 - 8|8 B3.3 microRNA 7066 ncRNA 66200 Mm.250474 NM_001033132 ENSMUSG00000075486 Commd6 1110059J08Rik|1700063H17Rik - 14|14 E2.3 COMM domain containing 6 protein-coding 229862 Mm.246591 NM_177665 ENSMUSG00000055138 Gm4861 9230109N16|EG229862 - 3 G3|3 predicted gene 4861 protein-coding 16628 Mm.445916 NM_008459 ENSMUSG00000072718 Klra10 Ly49J|Ly49i2 - 6 F3|6 63.44 cM killer cell lectin-like receptor subfamily A, member 10 protein-coding 102638258 Gm12103 - - 11 A4|11 18.16 cM predicted gene 12103 pseudo 11499 Mm.143889 NM_007401 ENSMUSG00000031554 Adam5 tMDC II|tMDCII - 8 A2|8 13.26 cM a disintegrin and metallopeptidase domain 5 protein-coding 63959 Mm.29744 NM_022880 ENSMUSG00000023942 Slc29a1 1200014D21Rik|AA407560|ENT1 - 17|17 B3 solute carrier family 29 (nucleoside transporters), member 1 protein-coding 620393 Mm.388992 NM_001195732 ENSMUSG00000087247 Alkal1 EG620393|Fam150a - 1|1 A1 ALK and LTK ligand 1 protein-coding 68519 Mm.236645 NM_001043335 ENSMUSG00000058070 Eml1 1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco - 12 F1|12 59.46 cM echinoderm microtubule associated protein like 1 protein-coding 14807 Mm.40896 NM_001081097 ENSMUSG00000001985 Grik3 9630027E11|GluK3|GluR7-3|Glur-7|Glur7 - 4 D2.2|4 58.91 cM glutamate receptor, ionotropic, kainate 3 protein-coding 51963 D6Ggc1e - - - DNA segment, Chr 6, G. Consalez 1, expressed unknown 105246378 XR_877202 Gm41674 - - 18 A1|18 predicted gene, 41674 ncRNA 408192 Mm.485769 NM_001199956 Gm9839 Senp15 - 1 B|1 predicted gene 9839 protein-coding 100503311 Mm.386825 NM_029604 ENSMUSG00000010136 Pifo 1700027A23Rik - 3|3 F2.2 primary cilia formation protein-coding 13097 Mm.42100 NM_010002 ENSMUSG00000032808 Cyp2c38 - - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 38 protein-coding 102638311 XR_377577 Gm34905 - - 6 B2.1|6 predicted gene, 34905 ncRNA 110120479 LOC110120479 - - - VISTA enhancer mm1597 biological-region 62600 D13Mit129 - - 13 63.03 cM DNA segment, Chr 13, Massachusetts Institute of Technology 129 unknown 623031 Gm13910 - - 2|2 E3 hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit pseudogene pseudo 637881 Vmn2r-ps87 EG637881 - 7|7 D3 vomeronasal 2, receptor, pseudogene 87 pseudo 382282 Mm.219322 NM_001025083 ENSMUSG00000071766 Rhox12 Gm1148 - X|X A3.3 reproductive homeobox 12 protein-coding 234094 Mm.240298 NM_172751 ENSMUSG00000071176 Arhgef10 6430549H08Rik|mKIAA0294 - 8|8 A1.1 Rho guanine nucleotide exchange factor (GEF) 10 protein-coding 664938 Gm13416 - - 2|2 A3 WW domain containing E3 ubiquitin protein ligase 1 pseudogene pseudo 109443 Rapop1 - - 16 22.4 cM radiation-induced apoptosis 1 unknown 20419 Mm.37801 NM_011369 ENSMUSG00000022322 Shcbp1 mPAL - 8|8 A1.1 Shc SH2-domain binding protein 1 protein-coding 545403 LOC545403 - - 2|2 A1 uncharacterized LOC545403 unknown 101056307 Gm28851 - - Y|Y predicted gene 28851 protein-coding 104070 Gdr1 Gdr-1 - - G6PD regulator 1 protein-coding 102635373 Gm32730 - - 11|11 predicted gene, 32730 ncRNA 239618 Mm.309826 NM_001164593 ENSMUSG00000036218 Pdzrn4 1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027 - 15|15 E3 PDZ domain containing RING finger 4 protein-coding 56314 Mm.19274 NM_019747 ENSMUSG00000037007 Zfp113 4732456B05Rik|mKIAA4229 - 5|5 G2 zinc finger protein 113 protein-coding 111323 Hmgn2-rs13 Hmg17-rs13 - - high mobility group nucleosomal binding domain 2, related sequence 13 pseudo 116627 Cafq2 - - 4 51.53 cM caffeine metabolism QTL 2 unknown 233637 XM_006508381 Gm4887 EG233637|Twf1 - 7|7 E3 predicted gene 4887 protein-coding 78883 Mm.410764 NR_131111 ENSMUSG00000086359 9630013K17Rik - - 11|11 B3 RIKEN cDNA 9630013K17 gene ncRNA 83494 Phgdh-ps1 D7Ssb1 - 7|7 D3 3-phosphoglycerate dehydrogenase, pseudogene 1 pseudo 108168423 XR_001782711 Gm46662 - - 19 D3|19 predicted gene, 46662 ncRNA 102636369 Gm33455 - - 1|1 predicted gene, 33455 ncRNA 22040 Mm.439964 NM_011637 ENSMUSG00000049734 Trex1 AU041952 - 9|9 F2 three prime repair exonuclease 1 protein-coding 100415958 Ywhaq-ps1 Gm17839|Ywhaq-ps - 7|7 E1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 1 pseudo 102467606 n-TTcgt4 n-Tt13 - 13 A3.1|13 nuclear encoded tRNA threonine 4 (anticodon CGT) tRNA 106699569 Cd8_cii E8V|L2a - - Cd8 alpha DNase I hypersensitive cluster CII biological-region 100503361 Mm.340490 NM_001195710 ENSMUSG00000094845 Tmem95 432576 - 11|11 B3 transmembrane protein 95 protein-coding 606535 Gm6066 EG606535|Ppia-ps14_696.1 - 14|14 D1 peptidylprolyl isomerase A pseudogene 14_696.1 pseudo 15218 Mm.4496 NM_008238 ENSMUSG00000002057 Foxn1 D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude - 11 B5|11 46.74 cM forkhead box N1 protein-coding 102639870 XR_388026 Gm38523 - - 8 E1|8 predicted gene, 38523 protein-coding 105244156 XR_879818 Gm39817 - - 11 B1.1|11 predicted gene, 39817 ncRNA 102465705 NR_106082 ENSMUSG00000098989 Mir7223 Gm28009|mmu-mir-7223 - 11|11 E1 microRNA 7223 ncRNA 108168773 XR_001783385 Gm46750 - - 2 C3|2 predicted gene, 46750 ncRNA 56384 Mm.260538 NM_019694 ENSMUSG00000005299 Letm1 - - 5|5 B2 leucine zipper-EF-hand containing transmembrane protein 1 protein-coding 622159 Gm6292 EG622159 - X|X D spermine synthase pseudogene pseudo 231583 Mm.440571 NM_174870 ENSMUSG00000046959 Slc26a1 Sat1 - 5|5 F solute carrier family 26 (sulfate transporter), member 1 protein-coding 233081 Mm.425422 NM_194057 ENSMUSG00000044453 Ffar1 Gpr40 - 7|7 B1 free fatty acid receptor 1 protein-coding 102637801 XR_391669 Gm34522 - - X A3.3|X predicted gene, 34522 ncRNA 97507 C76669 - - - expressed sequence C76669 unknown 16607 Klk1b15-ps Gk15|Klk-ps5|mGK-15 - 7 B3|7 28.59 cM kallikrein 1-related peptidase b15, pseudogene pseudo 102631526 Gm29842 - - 13|13 predicted gene, 29842 ncRNA 75522 Mm.54259 NR_126476 ENSMUSG00000113825 1700024I08Rik - - 13|13 B3 RIKEN cDNA 1700024I08 gene ncRNA 665685 Ppp1r2-ps2 EG665685|Gm7749 - 6 D1|6 protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 2 pseudo 108168934 XR_001784261 Gm46848 - - 4 A3|4 predicted gene, 46848 ncRNA 100504662 Gm20338 - - 13|13 39.71 cM predicted gene, 20338 ncRNA 102636224 XR_384061 Gm33353 - - 15 B3.1|15 predicted gene, 33353 ncRNA 16199 Mm.384 NM_008374 ENSMUSG00000020279 Il9r - - 11|11 A4 interleukin 9 receptor protein-coding 320302 Mm.482978 NM_177130 ENSMUSG00000031286 Glt28d2 4732486J07Rik|Glt28d1l - 3|3 F1 glycosyltransferase 28 domain containing 2 protein-coding 15507 Mm.13849 NM_013560 ENSMUSG00000004951 Hspb1 27kDa|Hsp25 - 5 G2|5 75.51 cM heat shock protein 1 protein-coding 105244168 Mm.393841 Gm12227 - - 11|11 32.13 cM predicted gene 12227 ncRNA 100036497 Qbis4 - - 15 37.58 cM QTL for body weight independent of sex 4 unknown 100043010 Rpl10-ps6 Gm4167 - 19 C2|19 ribosomal protein L10, pseudogene 6 pseudo 100125873 Cyp3a60-ps Gm20576 - 5|5 G3 cytochrome P450, family 3, subfamily a, member 60, pseudogene pseudo 102465581 NR_105929 ENSMUSG00000105138 Mir6964 mmu-mir-6964 - 16|16 C4 microRNA 6964 ncRNA 21283 T(9;11)9Ad T9Ad - - reciprocal translocation, Chr 9 and 11, Adler 9 other 628277 Mm.3746 Gm6863 EG628277 - 12|12 E nascent polypeptide-associated complex alpha polypeptide pseudogene pseudo 62481 D10Mit105 - - 10 13.59 cM DNA segment, Chr 10, Massachusetts Institute of Technology 105 unknown 70661 Mm.219459 NM_027498 ENSMUSG00000034135 Sik3 5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999 - 9|9 A5.2 SIK family kinase 3 protein-coding 18405 Mm.4777 NM_008768 ENSMUSG00000039196 Orm1 Agp-1|Agp-2|Orm-1 - 4 B3|4 33.96 cM orosomucoid 1 protein-coding 83395 Mm.156282 NM_031183 ENSMUSG00000038560 Sp6 1110025J03Rik|AA591031|AI592962|Epfn|Klf14 - 11|11 D trans-acting transcription factor 6 protein-coding 108168180 Gm46470 - - 14 D3|14 predicted gene, 46470 pseudo 111779 Igk-V15 - - - immunoglobulin kappa chain variable 15 (V15 family) other 16552 Mm.216057 NM_010616 ENSMUSG00000028357 Kif12 - - 4|4 B3 kinesin family member 12 protein-coding 56201 T(12;16)1Cje Ts108Cje|Ts1Cje - - reciprocal translocation, Chr 12 and 16, Epstein 1 other 257774 Olfr673-ps1 EG257774|GA_x5J8B7W6B6J-189947-189022|Gm5003 - 7 E3|7 olfactory receptor 673, pseudogene 1 pseudo 100038575 Mm.367838 NR_045336 ENSMUSG00000111765 Gm10635 - - 9 E1|9 predicted gene 10635 ncRNA 61530 D8Mit189 - - 8 21.07 cM DNA segment, Chr 8, Massachusetts Institute of Technology 189 unknown 100039725 Gm2390 - - 18|18 E4 WD repeat domain 53 pseudogene pseudo 102632876 XR_377380 Gm30838 - - 6 A3.3|6 predicted gene, 30838 ncRNA 229534 Mm.65906 NM_146131 ENSMUSG00000042613 Pbxip1 4732463H20Rik - 3|3 F1 pre B cell leukemia transcription factor interacting protein 1 protein-coding 78787 Mm.301173 NM_030180 ENSMUSG00000034235 Usp54 4930429G18Rik|AI115571|C030002J06Rik - 14|14 A3 ubiquitin specific peptidase 54 protein-coding 109279904 LOC109279904 Mm89 - - VISTA enhancer mm89 biological-region 15450 Mm.390187 NM_008280 ENSMUSG00000032207 Lipc AI256194|HL|Hpl - 9 D|9 39.57 cM lipase, hepatic protein-coding 102636941 Gm33874 - - 3|3 predicted gene, 33874 ncRNA 102640485 XR_869506 Gm36533 - - 6 G1|6 predicted gene, 36533 ncRNA 102638280 XR_373442 Gm34881 - - 1 C2|1 predicted gene, 34881 ncRNA 102634132 XM_017320491 B230208B08Rik - - 4|4 C3 RIKEN cDNA B230208B08 gene protein-coding 54126 Mm.244068 NM_017402 ENSMUSG00000031511 Arhgef7 Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR - 8|8 A1.1 Rho guanine nucleotide exchange factor (GEF7) protein-coding 75771 Mm.216107 LOC75771 - - 7|7 uncharacterized LOC75771 unknown 76483 Mm.12787 NM_029624 ENSMUSG00000002279 Lmf1 2400010G15Rik|AW822050|Tmem112|cld - 17 A3.3|17 12.7 cM lipase maturation factor 1 protein-coding 93873 Mm.197508 NM_053127 ENSMUSG00000051599 Pcdhb2 PcdhbB - 18|18 B3 protocadherin beta 2 protein-coding 100416403 Gm18097 - - 4|4 D3 predicted gene, 18097 pseudo 102634377 XR_387292 Gm31973 - - 1 E1.1|1 predicted gene, 31973 ncRNA 105245528 Gm40973 - - 13|13 predicted gene, 40973 ncRNA 75870 Mm.159608 NM_029467 ENSMUSG00000020712 Tcam1 4930570F09Rik|AI429105 - 11 E1|11 68.89 cM testicular cell adhesion molecule 1 protein-coding 21384 Mm.88761 NM_009323 ENSMUSG00000027868 Tbx15 Tbx14|Tbx8|de - 3 F2.2|3 43.03 cM T-box 15 protein-coding 102636641 XR_878012 Gm26618 - - X A1.1|X predicted gene, 26618 ncRNA 666079 Gm7920 EG666079 - 14|14 B pleckstrin homology domain containing, family F (with FYVE domain) member 2 pseudogene pseudo 100042703 Gm3978 - - 7 A1|7 vomeronasal 2, receptor 31 pseudogene pseudo 111933 Iap3rc27 - - - intracisternal A-type particle, U3 region, SINE repeat c-27 other 100417364 Gm18563 - - 13|13 C1 jagunal homolog 1 pseudogene pseudo 676992 Gm17761 - - 13|13 A5 predicted gene, 17761 pseudo 13404 Mm.2524 NM_010059 ENSMUSG00000022429 Dmc1 Dmc1h|Lim15|Mei11|sgdp - 15 E1|15 37.79 cM DNA meiotic recombinase 1 protein-coding 63016 D1Mit273S - - - DNA Segment, Chr 1, Massachusetts Institute of Technology-273S unknown 67694 Mm.240619 NM_026319 ENSMUSG00000028576 Ift74 1700029H06Rik|Ccdc2|Cmg1|b2b796Clo - 4|4 C5 intraflagellar transport 74 protein-coding 62449 D11Mit353 - - 11 46.74 cM DNA Segment, Chr 11 Massachusetts Institute of Technology 353 unknown 78611 Mm.446227 NM_001033187 Btbd19 9530048O09Rik|BB115071 - 4|4 D1 BTB (POZ) domain containing 19 ncRNA 27103 Mm.217616 NM_013719 ENSMUSG00000005102 Eif2ak4 2610011M03|GCN2|MGCN2 - 2|2 E5 eukaryotic translation initiation factor 2 alpha kinase 4 protein-coding 100038977 NM_001102677 ENSMUSG00000073267 Gm1993 - - X A2|X predicted gene 1993 protein-coding 102633752 XR_386418 Gm31503 - - 18 E3|18 predicted gene, 31503 ncRNA 11839 Mm.8039 NM_009704 ENSMUSG00000029378 Areg AR|Mcub|Sdgf - 5 E1|5 44.78 cM amphiregulin protein-coding 111805 Iapls3-30 - - - intracisternal A particle, lymphocyte specific 3-30 other 61766 D3Mit286 - - 3 48.13 cM DNA segment, Chr 3, Massachusetts Institute of Technology 286 unknown 225055 Mm.386857 NM_001081034 ENSMUSG00000005371 Fbxo11 C80048|Jf - 17 E4|17 57.87 cM F-box protein 11 protein-coding 665516 Gm7669 EG665516 - 8|8 A1.1 3-phosphoglycerate dehydrogenase pseudogene pseudo 100040822 Mm.429271 XR_105825 Gm1604a - - 17|17 A1 predicted gene 1604A unknown 102632435 XR_877091 Gm30510 - - 17 E4|17 predicted gene, 30510 ncRNA 16227 In(1)49Rk In49Rk - - inversion, Chr 1, Roderick 49 other 102638887 XM_006523136 Gm35342 - - 16 C3.3|16 predicted gene, 35342 protein-coding 245492 Mm.109633 NM_173435 ENSMUSG00000060673 4930595M18Rik - - X|X B RIKEN cDNA 4930595M18 gene protein-coding 109612 Es28 Es-28 - - esterase 28 protein-coding 320794 Mm.291312 C130034I24Rik - - 2|2 RIKEN cDNA C130034I24 gene protein-coding 100503868 Mm.442076 XR_106151 ENSMUSG00000110332 Gm19935 Gm45396 - 8 C4|8 44.24 cM predicted gene, 19935 ncRNA 62070 D10Mit47 - - 10 64.73 cM DNA segment, Chr 10, Massachusetts Institute of Technology 47 unknown 100040357 XR_882341 Gm20837 - - Y|Y E predicted gene, 20837 ncRNA 11695 Mm.389389 NM_007442 ENSMUSG00000040310 Alx4 lst - 2 E1|2 51.62 cM aristaless-like homeobox 4 protein-coding 677010 Gm9703 - - 17 A3.3|17 predicted gene 9703 pseudo 102637917 Gm34610 - - 11|11 predicted gene, 34610 ncRNA 12561 Mm.184711 NM_009867 ENSMUSG00000000305 Cdh4 AW120700|R-CAD|R-Cadh|Rcad - 2 H4|2 101.86 cM cadherin 4 protein-coding 102637855 XR_880231 Gm34560 - - 11 E1|11 predicted gene, 34560 ncRNA 105246403 XR_877311 Gm41695 - - 18 B2|18 predicted gene, 41695 ncRNA 105247008 XR_880703 Gm42192 - - 3 A3|3 predicted gene, 42192 ncRNA 383752 Gm14108 - - 2|2 G3 cofilin 1, non-muscle pseudogene pseudo 79198 Ihit1 - - - Igf2-H-19 interval transcript 1 protein-coding 100124483 NR_030555 ENSMUSG00000076976 Mir297c Mirn297c - 2 A1|2 microRNA 297c ncRNA 60821 D4Mit63 - - 4 81.53 cM DNA segment, Chr 4, Massachusetts Institute of Technology 63 unknown 16081 Mm.304143 Igk-V1 - - - immunoglobulin kappa chain variable 1 (V1) other 630579 Mm.440905 NM_001039239 ENSMUSG00000074867 Zfp808 EG630579|Gm7036 - 13 B3|13 zinc finger protein 808 protein-coding 105244941 XR_870171 Gm40463 - - 8 A1.3|8 predicted gene, 40463 ncRNA 320168 9630050E16Rik - - 14|14 RIKEN cDNA 9630050E16 gene protein-coding 100416121 Gm15950 - - 16|16 A1 laminin, gamma 1 pseudogene pseudo 102058 Mm.347360 NM_198103 ENSMUSG00000074030 Exoc8 AI414418|EXO84|Exo84p|R74783|SEC84 - 8|8 E2 exocyst complex component 8 protein-coding 100036421 Pcd4ts3 - - - p-glycoprotein positive CD4 T cell subset 3 unknown 101056159 Mm.425931 XR_874549 ENSMUSG00000096446 LOC101056159 - - 14 B uncharacterized LOC101056159 protein-coding 102638237 XR_387879 Gm34846 - - 8 C3|8 predicted gene, 34846 ncRNA 20671 Mm.279103 NM_011441 ENSMUSG00000025902 Sox17 - - 1 A1|1 1.65 cM SRY (sex determining region Y)-box 17 protein-coding 68895 Mm.266978 NM_026864 ENSMUSG00000029641 Rasl11a 1110065D03Rik|AI852031 - 5|5 G3 RAS-like, family 11, member A protein-coding 100038356 Mm.442704 NR_045880 ENSMUSG00000085828 Gm15612 - - 6 D1|6 predicted gene 15612 ncRNA 236848 Mm.24569 NM_001033328 ENSMUSG00000073139 Tmem185a ee3 - X|X A7.2 transmembrane protein 185A protein-coding 102637208 XR_381684 Gm34080 - - 12 C3|12 predicted gene, 34080 ncRNA 15547 Mm.271798 NM_008307 ENSMUSG00000022721 Trmt2a Htf9c - 16 A3|16 11.31 cM TRM2 tRNA methyltransferase 2A protein-coding 116956 Trbv4c2 - - 6 1.81 cM T cell receptor beta variable 4, control 2 unknown 100038525 Mm.440596 NR_040532 ENSMUSG00000075025 Gm10804 - - 2 E1|2 predicted gene 10804 ncRNA 100503072 Mm.446661 NR_045788 ENSMUSG00000087695 Gm16291 - - 15 B3.1|15 15.55 cM predicted gene 16291 ncRNA 102638257 XR_881549 Gm34863 - - 4 E1|4 predicted gene, 34863 ncRNA 105245499 XR_873393 Gm40947 - - 13 A5|13 predicted gene, 40947 ncRNA 622102 Gm6286 EG622102 - 1|1 H2.3 ribosomal protein L7A pseudogene pseudo 102632685 Gm29155 - - 1|1 predicted gene 29155 ncRNA 105244071 XR_865917 Gm39749 - - 1 H6|1 predicted gene, 39749 ncRNA 654318 Mm.255685 NR_029450 ENSMUSG00000085408 C530005A16Rik D930044c15rik - 4|4 D1 RIKEN cDNA C530005A16 gene ncRNA 12778 Mm.6522 NM_007722 ENSMUSG00000044337 Ackr3 AW541270|CXC-R7|CXCR-7|Cmkor1|Cxcr7|RDC-1|Rdc1 - 1 D|1 45.28 cM atypical chemokine receptor 3 protein-coding 61481 D7Mit147 - - 7 43.46 cM DNA segment, Chr 7, Massachusetts Institute of Technology 147 unknown 72595 2700054A04Rik - - 14|14 RIKEN cDNA 2700054A04 gene protein-coding 102637987 XR_391571 ENSMUSG00000109407 Gm34664 Gm44994 - 7 C|7 predicted gene, 34664 ncRNA 108511951 Gata2r5 - - 6 D1 Gata2R5 erythroid cis-regulatory module biological-region 26930 Mm.439757 NM_012022 Ppnr mp41 - 19|19 D2 per-pentamer repeat gene unknown 338320 Mm.213215 NM_146034 ENSMUSG00000021000 Mia2 Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6 - 12 26.0 cM|12 C1 melanoma inhibitory activity 2 protein-coding 101931 AA407881 - - - expressed sequence AA407881 protein-coding 112058 Livq1 - - - percent liver QTL 1 unknown 53287 201E9 - - - DNA segment, 201E9 Research Genetics unknown 233799 Mm.268448 NM_146197 ENSMUSG00000030945 Acsm2 AI315615|BC031140 - 7|7 F2 acyl-CoA synthetase medium-chain family member 2 protein-coding 108167638 XR_001779091 Gm46102 - - 9 A1|9 predicted gene, 46102 ncRNA 100040543 Gm2830 Gm16247 - 13 B1|13 predicted gene 2830 pseudo 102636798 XR_378356 Gm33770 - - 7 E1|7 predicted gene, 33770 ncRNA 258140 Olfr567-ps1 MOR30-4P - 7|7 E3 olfactory receptor 567, pseudogene 1 pseudo 78127 Mm.376175 NR_130992 ENSMUSG00000112497 4930525C09Rik - - 10|10 C3 RIKEN cDNA 4930525C09 gene ncRNA 226154 Mm.28204 NM_145503 ENSMUSG00000035342 Lzts2 BC014695|LAPSER1|mKIAA1813 - 19|19 C3 leucine zipper, putative tumor suppressor 2 protein-coding 665341 Gm7593 EG665341 - 1|1 A3 signal recognition particle receptor ('docking protein') pseudogene pseudo 19053 Mm.29301 NM_017374 ENSMUSG00000009630 Ppp2cb AI115466|D8Ertd766e|PP2Ac - 8 A3|8 20.63 cM protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform protein-coding 214162 Mm.2389 NM_001081049 ENSMUSG00000002028 Kmt2a 6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050 - 9 A5.2|9 24.84 cM lysine (K)-specific methyltransferase 2A protein-coding 624931 XM_006536387 LOC624931 - - 5|5 PRAME family member 8-like protein-coding 102641740 Mm.404959 Gm38572 - - 8|8 predicted gene, 38572 ncRNA 258283 Mm.377413 NM_146286 ENSMUSG00000046678 Olfr981 MOR223-8 - 9|9 A5.1 olfactory receptor 981 protein-coding 102641663 Mm.22700 LOC102641663 - - - general transcription factor IIH subunit 1-like protein-coding 102640467 XR_386937 Gm36522 - - X A6|X predicted gene, 36522 ncRNA 106007494 Hbb-3'hs1 3'HS1 - 7 E2 beta-globin 3' hypersensitive site 1 biological-region 667956 Gm8896 EG667956 - 5 A1|5 anaphase-promoting complex subunit 5 pseudogene pseudo 100504039 NR_102724 LOC100504039 - - X A5 uncharacterized LOC100504039 ncRNA 105245625 XR_873938 Gm41054 - - 13 D2.1|13 predicted gene, 41054 ncRNA 100126085 Mtbcq7 - - - multiple trait body composition QTL 7 unknown 19982 Mm.286408 NM_019865 ENSMUSG00000079435 Rpl36a L44L|Rpl44 - X|X E3 ribosomal protein L36A protein-coding 11545 Mm.277779 NM_007415 ENSMUSG00000026496 Parp1 5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|msPARP|parp-1|sPARP-1 - 1 H4|1 84.44 cM poly (ADP-ribose) polymerase family, member 1 protein-coding 493085 Susp Idd28 - 3 30.51 cM suppressor of superoxide production unknown 723887 NR_030147 ENSMUSG00000070078 Mir463 Mirn463|mir-463|mmu-mir-463 - X A7.1|X microRNA 463 ncRNA 27373 Mm.30199 NM_013767 ENSMUSG00000022433 Csnk1e AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau - 15|15 E1 casein kinase 1, epsilon protein-coding 17721 ND5 - - - NADH dehydrogenase subunit 5 protein-coding 104731 AA517849 - - - expressed sequence AA517849 unknown 224116 Mm.153301 NM_146071 ENSMUSG00000035638 Muc20 BC026367 - 16|16 B3 mucin 20 protein-coding 434109 Gm5583 EG434109 - 7|7 A1 predicted gene 5583 protein-coding 723873 NR_030153 ENSMUSG00000070073 Mir470 Mirn470|mir-470|mmu-mir-470 - X A7.1|X microRNA 470 ncRNA 61878 D1Mit330 - - 1 35.18 cM DNA segment, Chr 1, Massachusetts Institute of Technology 330 unknown 606729 Gm6081 EG606729|Ppia-ps13_297.1 - 13|13 A3.1 peptidylprolyl isomerase A pseudogene 13_297.1 pseudo 100043525 Gm12571 - - 11|11 B5 U6 small nuclear RNA associated LSM6 pseudogene pseudo 100035941 Hdlq41 - - - HDL QTL 41 unknown 110120424 LOC110120424 - - - VISTA enhancer mm1416 biological-region 240038 Mm.227945 NM_001205095 ENSMUSG00000096433 Zfp994 EG240038|Gm4944 - 17|17 A3.3 zinc finger protein 994 protein-coding 62391 D16Mit29 - - 16 12.38 cM DNA segment, Chr 16, Massachusetts Institute of Technology 29 unknown 227671 Mm.484270 NM_139197 ENSMUSG00000026829 Gbgt1 Fgs|Fs - 2|2 A3 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 protein-coding 239188 Mm.441158 NM_172813 ENSMUSG00000022012 Enox1 B230207J08|D230005D02Rik - 14|14 D3 ecto-NOX disulfide-thiol exchanger 1 protein-coding 100036177 Vmmt5 - - - vertebral morphology and mechanical traits 5 unknown 100037411 Dbmc2 Dmc2 - - diabetes mRNA cluster 2 unknown 666157 Gm7955 EG666157 - 17|17 A3.3 predicted gene 7955 pseudo 668168 Gm9017 EG668168 - 16|16 C1.3 predicted gene 9017 protein-coding 110755 Spe1r Msp-1|Msp1|Spe1-r|Ssp - - salivary protein electrophoretic 1, regulator unknown 105247022 XR_880751 Gm42204 - - 3 A3|3 predicted gene, 42204 ncRNA 77366 9530002O20Rik - - 16|16 RIKEN cDNA 9530002O20 gene protein-coding 140918 Mm.215250 NM_080852 ENSMUSG00000039710 Slc7a12 Asc-2|XAT1 - 3|3 A1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 12 protein-coding 232286 Mm.30893 NM_001081111 ENSMUSG00000030059 Tmf1 7030402D04Rik|Gm153|Tmf1` - 6|6 D3 TATA element modulatory factor 1 protein-coding 108168885 XR_001783926 Gm46815 - - 3 F2.1|3 predicted gene, 46815 ncRNA 228839 Mm.315625 NM_173396 ENSMUSG00000062175 Tgif2 4921501K24|5730599O09Rik|C80753|C81206 - 2|2 H1 TGFB-induced factor homeobox 2 protein-coding 102637346 XR_375047 Gm34181 - - 2 G1|2 predicted gene, 34181 ncRNA 110350 Mm.237596 NM_029851 ENSMUSG00000047193 Dync2h1 4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|b2b414Clo|mKIAA1997 - 9 A1|9 2.46 cM dynein cytoplasmic 2 heavy chain 1 protein-coding 15929 Mm.14825 NM_008323 ENSMUSG00000002010 Idh3g - - X A7.3|X 37.41 cM isocitrate dehydrogenase 3 (NAD+), gamma protein-coding 100504307 Gm20163 - - 8|8 53.04 cM predicted gene, 20163 ncRNA 65964 Mm.304143 NM_023057 ENSMUSG00000004085 Map3k20 AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak - 2|2 C3 mitogen-activated protein kinase kinase kinase 20 protein-coding 100217466 NR_028560 Scarna17 MBII-119 - 18 E2|18 small Cajal body-specific RNA 17 ncRNA 546118 Mm.380138 NM_001033793 ENSMUSG00000074502 Ubtfl1 B020006M18Rik|Hmgpi - 9|9 A2 upstream binding transcription factor, RNA polymerase I-like 1 protein-coding 100039958 Gm11843 - - 4|4 A1 predicted gene 11843 pseudo 258177 Mm.377369 NM_001011860 ENSMUSG00000075101 Olfr1222 MOR233-14 - 2|2 E1 olfactory receptor 1222 protein-coding 105243080 XR_870032 Gm39108 - - 7 F3|7 predicted gene, 39108 ncRNA 666611 Gm8188 EG666611 - 10|10 C1 mitogen-activated protein kinase kinase kinase 7 pseudogene pseudo 408071 D6Wum42 - - - DNA segment, Chr 6, Washington University School of Medicine 42 unknown 105245532 Gm40977 - - 13 B3|13 predicted gene, 40977 pseudo 387237 NR_029567 ENSMUSG00000065469 Mir129-1 Mirn129-1|Mirn129b|miR-129b|mir-129-1 - 6|6 A3.3 microRNA 129-1 ncRNA 208518 Mm.105652 NM_198019 ENSMUSG00000041491 Cep78 5730599I05Rik|D030027P05 - 19|19 A centrosomal protein 78 protein-coding 102639893 XR_375959 Gm36097 - - 3 F2.3|3 predicted gene, 36097 ncRNA 385527 Gm14585 EG385527 - X|X A5 ribosomal protein L13 pseudogene pseudo 100042679 Mm.484007 NR_030709 Gm16386 EG545191|Gm21017 - 17|17 A3.3 zinc finger protein 946 pseudogene pseudo 320891 C130070B15Rik - - 7|7 A2 RIKEN cDNA C130070B15 gene unknown 102637406 XR_874471 Gm34223 - - 14 A3|14 predicted gene, 34223 ncRNA 102641700 Gm38570 - - 6|6 predicted gene, 38570 ncRNA 105245912 XR_875133 Gm41292 - - 15 B3.1|15 predicted gene, 41292 ncRNA 108143 Mm.301148 NM_027139 ENSMUSG00000052293 Taf9 2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g - 13|13 D1 TATA-box binding protein associated factor 9 protein-coding 12467 Mm.4126 NM_009839 ENSMUSG00000020698 Cct6b CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2 - 11|11 C chaperonin containing Tcp1, subunit 6b (zeta) protein-coding 170765 Mm.42604 NM_133229 ENSMUSG00000022941 Ripply3 Dscr6 - 16|16 C4 ripply transcriptional repressor 3 protein-coding 70166 Mm.75602 NM_027340 ENSMUSG00000024770 Lipn 2210418G03Rik|Lipl4 - 19|19 C1 lipase, family member N protein-coding 100417507 Gm18655 - - 9|9 F1 cytoskeleton associated protein 5 pseudogene pseudo 108168526 Gm29452 - - Y C3|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 381970 Mm.333771 NM_207262 ENSMUSG00000036521 Scgb2b2 Abpbg2|Abpe|lacrimal - 7|7 B1 secretoglobin, family 2B, member 2 protein-coding 105244051 Gm39733 - - 1|1 predicted gene, 39733 ncRNA 633639 Gm7119 EG633639 - 12 D3|12 predicted gene 7119 pseudo 102635138 XR_386960 Gm38474 - - X A7.3|X predicted gene, 38474 ncRNA 252844 Nlk-ps1 - - 2|2 D nemo like kinase, pseudogene 1 pseudo 12042 Mm.239141 NM_009740 ENSMUSG00000028191 Bcl10 AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10 - 3|3 H2 B cell leukemia/lymphoma 10 protein-coding 108387 Xmmv4 Env-4|Xmmv-4 - - xenotropic-MCF leukemia virus 4 other 270058 Mm.248559 NM_173013 ENSMUSG00000019261 Map1s 6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1 - 8|8 B3.3 microtubule-associated protein 1S protein-coding 100035819 Bmch2 - - 4 24.28 cM bone mechanical trait 2 unknown 319476 Mm.95780 NM_176920 ENSMUSG00000045776 Lrtm1 A930016D02Rik - 14|14 A3 leucine-rich repeats and transmembrane domains 1 protein-coding 102639957 Gm12280 - - 11|11 38.47 cM predicted gene 12280 ncRNA 102632917 Gm30869 - - 14|14 predicted gene, 30869 ncRNA 108254674 LOC108254674 - - - Pax5 enhancer in intron 5 biological-region 111977 El1 El|El-1 - - epilepsy 1 unknown 112273 Orch1 Orch-1 - - autoimmune orchitis resistance 1 unknown 102631898 XR_384964 Gm30116 - - 16 C3.1|16 predicted gene, 30116 ncRNA 140797 Sluc3 Pas1b - 6 54.79 cM susceptibility to lung cancer 3 unknown 108499 Dgcr5 Dgcr5l - - DiGeorge syndrome critical region gene 5 other 109690 Ir9 IR-H-Y - - immune response 9 unknown 192775 Mm.343850 NM_001037712 ENSMUSG00000001901 Kcnh6 m-erg2 - 11|11 E1 potassium voltage-gated channel, subfamily H (eag-related), member 6 protein-coding 112292 Tlsr1 - - 4 44.8 cM thymic lymphoma suppressor region 1 unknown 100416383 Gm18088 - - 18|18 D3 ribosomal protein S2 pseudogene pseudo 105242537 Gm38723 - - 5|5 predicted gene, 38723 ncRNA 102638502 Mm.416454 Gm10612 - - 8|8 71.95 cM predicted gene 10612 ncRNA 72776 Mm.440836 NM_028349 ENSMUSG00000027959 Sass6 2810453L12Rik - 3|3 G1 SAS-6 centriolar assembly protein protein-coding 104329 Blai2 Bla2 - - proviral insertion Bla 2 protein-coding 75794 4930444K16Rik - - 10|10 RIKEN cDNA 4930444K16 gene protein-coding 100035803 Alcrsp5 - - - alcohol response 5 unknown 100502959 Mm.395400 NR_040442 AV051173 - - 4 D1|4 expressed sequence AV051173 ncRNA 105246344 XR_877076 Gm41645 - - 17 E4|17 predicted gene, 41645 ncRNA 319983 Mm.343027 NR_015587 ENSMUSG00000097098 9330111N05Rik - - 13|13 C3 RIKEN cDNA 9330111N05 gene ncRNA 408056 Mm.34256 BC038331 - - - cDNA sequence BC038331 protein-coding 436231 Gm5761 EG436231 - X|X F1 translin-associated factor X pseudogene pseudo 97228 C78157 - - - expressed sequence C78157 unknown 270599 Mm.424438 NM_001033372 ENSMUSG00000064016 Gm648 - - X|X A6 predicted gene 648 protein-coding 102635191 NR_153784 Gm16573 - - 14 C3|14 28.33 cM predicted gene 16573 ncRNA 21096 T(15;19)6Gso T6Gso - - reciprocal translocation, Chr 15 and 19, Generoso 6 other 259081 Mm.347669 NM_147077 ENSMUSG00000090219 Olfr643 MOR13-2 - 7|7 E3 olfactory receptor 643 protein-coding 100038812 Slt2 - - - susceptibility to spontaneously occurring lung cancer 2 unknown 104293 Tsp7 - - - tumor suppressor region 7 protein-coding 102465671 NR_130343 ENSMUSG00000104854 Mir7116 mmu-mir-7116 - 11|11 D microRNA 7116 ncRNA 76411 Mm.292345 NM_029601 ENSMUSG00000007867 Ift43 1700019E19Rik|R75064 - 12|12 D2 intraflagellar transport 43 protein-coding 102372 AA407434 - - - expressed sequence AA407434 unknown 51927 Mm.26114 D3Ertd711e - - - DNA segment, Chr 3, ERATO Doi 711, expressed unknown 791316 Gm9891 - - - predicted gene 9891 protein-coding 20692 Mm.291442 NM_009242 ENSMUSG00000018593 Sparc BM-40|ON - 11 B1.3|11 33.04 cM secreted acidic cysteine rich glycoprotein protein-coding 259078 Mm.377826 NM_147075 ENSMUSG00000073924 Olfr656 MOR27-1 - 7|7 E3 olfactory receptor 656 protein-coding 627821 Mm.99441 NM_001177416 ENSMUSG00000053367 Epp13 EG627821|Eddm13|Gm6792 - 7|7 A1 epididymal protein 13 protein-coding 12011 ba - - - bare unknown 675966 Gm9659 - - 15|15 E1 ribosomal protein L27a-like pseudogene pseudo 50916 Mm.103784 NM_018885 ENSMUSG00000021604 Irx4 - - 13|13 C1 Iroquois homeobox 4 protein-coding 11852 Mm.687 NM_007483 ENSMUSG00000054364 Rhob AA017882|Arh6|Arhb - 12|12 A1.1 ras homolog family member B protein-coding 100417854 Gm18865 - - 3|3 B heterogeneous nuclear ribonucleoprotein H1 pseudogene pseudo 102635809 XR_385784 Gm33055 - - 17 E3|17 predicted gene, 33055 ncRNA 140858 Mm.28265 NM_080848 ENSMUSG00000026917 Wdr5 2410008O07Rik|AA408785|AA960360|Big|Big-3 - 2|2 A3 WD repeat domain 5 protein-coding 102640606 XR_386939 Gm36631 - - X A6|X predicted gene, 36631 ncRNA 72953 2900042K21Rik - - 1|1 RIKEN cDNA 2900042K21 gene protein-coding 170826 Mm.415302 NM_133249 ENSMUSG00000033871 Ppargc1b 4631412G21Rik|Perc - 18|18 E1 peroxisome proliferative activated receptor, gamma, coactivator 1 beta protein-coding 76082 5830468F06Rik - - 8|8 A1.1 RIKEN cDNA 5830468F06 gene unknown 101996 Mm.394948 AI121036 - - - expressed sequence AI121036 unknown 107954 Pim1-rs1 Pim-1rs1 - - proviral integration site 1 related sequence 1 protein-coding 105245392 XR_872548 Gm40856 - - 12 A1.3|12 predicted gene, 40856 ncRNA 100862097 Gm38432 - - 18 A1|18 predicted gene, 38432 pseudo 16381 Is(7;InX)1Neu Is1Neu - - insertion, Chr 7 piece into inverted Chr X, Neuhauser-Klaus 1 other 258131 Olfr409-ps1 MOR133-2 - 11|11 B5 olfactory receptor 409, pseudogene 1 pseudo 434391 Mm.487734 LOC434391 - - 9|9 A4 uncharacterized LOC434391 unknown 105246263 Gm41571 - - 17|17 predicted gene, 41571 ncRNA 15254 Mm.425 NM_008248 ENSMUSG00000020267 Hint1 AA673479|Hint|Ipk1|PKCI-1|PRKCNH1 - 11|11 B1.3 histidine triad nucleotide binding protein 1 protein-coding 79455 Mm.143764 NM_023508 ENSMUSG00000029235 Pdcl2 1700010B22Rik|1700016K07Rik|Mgcphlp|Tphlp - 5|5 C3.3 phosducin-like 2 protein-coding 668302 Gm9095 EG668302 - X|X D ribosomal protein SA pseudogene pseudo 77720 6720454L20Rik - - 5|5 RIKEN cDNA 6720454L20 gene protein-coding 102641516 XR_878297 Gm38561 - - X F5|X predicted gene, 38561 ncRNA 105244287 XR_866717 Gm39926 - - 2 F1|2 predicted gene, 39926 ncRNA 69384 Mm.158271 NM_027066 ENSMUSG00000025652 Tmem89 1700024B07Rik - 9|9 F2 transmembrane protein 89 protein-coding 111430 Mtv54 Mtv-54 - - mammary tumor virus locus 54 other 112163553 Mm.277906 AA163583 - - - expressed sequence AA163583 protein-coding 102636108 Gm29383 - - 1|1 predicted gene 29383 pseudo 16326 Mm.3510 NM_008382 ENSMUSG00000047492 Inhbe - - 10 D3|10 74.5 cM inhibin beta-E protein-coding 73530 1700074I03Rik - - 15|15 B3.1 RIKEN cDNA 1700074I03 gene protein-coding 666824 Gm8310 EG666824 - X|X A7.1 alkaline phosphatase, liver/bone/kidney pseudogene pseudo 100217428 NR_028528 ENSMUSG00000065272 Snord57 MBII-434 - 2 F1|2 small nucleolar RNA, C/D box 57 snoRNA 105243396 XR_870714 Gm39330 - - 9 A5.3|9 predicted gene, 39330 ncRNA 22225 Mm.3571 NM_013700 ENSMUSG00000038429 Usp5 AA407472|ISOT|ISOT-1|Ucht - 6 F2|6 59.17 cM ubiquitin specific peptidase 5 (isopeptidase T) protein-coding 223706 Mm.436843 NM_145474 ENSMUSG00000094559 Cyp2d34 - - 15|15 E1 cytochrome P450, family 2, subfamily d, polypeptide 34 protein-coding 116952 Bulb1 Bulb4a - 4 42.36 cM bulb size 1 unknown 100009614 Mm.35821 NM_001081452 ENSMUSG00000094012 Gm10024 - - 10|10 C1 predicted gene 10024 protein-coding 102641552 XR_875374 Gm38563 - - 15 D1|15 predicted gene, 38563 ncRNA 15051 Mm.195061 NM_010399 H2-T9 H-2T9 - 17 B1|17 histocompatibility 2, T region locus 9 protein-coding 382036 Mm.132367 NR_151739 A530010L16Rik BC032935|Gm1908|Gm45801 - 8|8 E1 RIKEN cDNA A530010L16 gene ncRNA 116859 Bdt5 - - 15 1.84 cM bone density traits 5 unknown 213311 Mm.233904 NM_178674 ENSMUSG00000035509 Fbxl21 D630045D17Rik|FBL3B|FBXL3B|Psttm - 13|13 B1 F-box and leucine-rich repeat protein 21 protein-coding 23912 Mm.253876 NM_175092 ENSMUSG00000029449 Rhof AI845056|AV026554|Arhf|Ifld1|Rif - 5 F|5 62.77 cM ras homolog family member F (in filopodia) protein-coding 102634153 Gm31808 - - 7|7 predicted gene, 31808 ncRNA 105244059 Mm.484139 XR_001779638 LOC105244059 - - 1 H6 uncharacterized LOC105244059 ncRNA 60922 D9Mit46 - - 9 26.9 cM DNA segment, Chr 9, Massachusetts Institute of Technology 46 unknown 100038591 Mm.441071 NR_045715 ENSMUSG00000097331 F420014N23Rik - - 10 D3|10 RIKEN cDNA F420014N23 gene ncRNA 105243028 XR_869867 Gm39069 - - 7 E3|7 predicted gene, 39069 ncRNA 100504181 Gm20102 - - 12|12 28.71 cM protein kish-A-like pseudo 108114 Mm.387538 NM_144856 ENSMUSG00000067144 Slc22a7 NLT|OAT2 - 17|17 C solute carrier family 22 (organic anion transporter), member 7 protein-coding 105243281 Gm39245 - - 8|8 predicted gene, 39245 ncRNA 100035214 Tmc1m1 - - - Tmc1 modifier 1 unknown 27920 D16Ium45 - - 16 51.26 cM DNA segment, Chr 16, Indiana University Medical 45 unknown 100417421 Gm18603 - - 8|8 C4 abhydrolase domain containing 10 pseudogene pseudo 71854 Mm.173395 NM_027960 ENSMUSG00000031898 Dpep3 1700018F16Rik|AI507039|MBD-3|MLZ-136 - 8|8 D3 dipeptidase 3 protein-coding 433941 Gm5561 - - 1|1 H4 ribosomal protein L29 pseudogene pseudo 67722 Mm.390222 NM_026338 ENSMUSG00000066368 Actl11 4921517D21Rik - 9|9 F1 actin-like 11 protein-coding 381045 Mm.310434 NM_198645 ENSMUSG00000075229 Ccdc58 A930007B11Rik|AI413631 - 16|16 B3 coiled-coil domain containing 58 protein-coding 103943 Es24 Es-24 - - esterase 24 protein-coding 100503506 Gm19733 - - 7|7 10.27 cM predicted gene, 19733 ncRNA 71827 Mm.45373 NM_027941 ENSMUSG00000027702 Lrrc34 1700007J06Rik|SPATA34 - 3|3 A3 leucine rich repeat containing 34 protein-coding 359975 DXMgc112 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 112 unknown 320693 Mm.438134 C130021H21Rik - - - RIKEN cDNA C130021H21 gene protein-coding 85103 D1Mit493 - - 1 50.73 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 493 unknown 67544 Mm.35039 NM_024203 ENSMUSG00000014763 Fam120b 4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838 - 17|17 A2 family with sequence similarity 120, member B protein-coding 102639550 XR_871846 Gm35837 - - 10 C1|10 predicted gene, 35837 ncRNA 387513 Mm.377920 NM_001001451 ENSMUSG00000058250 Tas2r138 T2R138|Tas2r38|mt2r31 - 6|6 B1 taste receptor, type 2, member 138 protein-coding 546325 Mm.436644 NM_001081670 ENSMUSG00000079531 Gm5936 EG546325 - X|X A7.3 predicted gene 5936 protein-coding 102294 Mm.245297 NM_133969 ENSMUSG00000079057 Cyp4v3 AU043077|AW111961|Cyp4v2 - 8|8 B1.1 cytochrome P450, family 4, subfamily v, polypeptide 3 protein-coding 102637081 XR_380993 Gm33983 - - 11 A1|11 predicted gene, 33983 ncRNA 16814 Mm.116815 NM_010691 ENSMUSG00000025216 Lbx1 Lbx1h - 19|19 C3 ladybird homeobox 1 protein-coding 102632858 XR_386313 Gm30821 - - 18 E2|18 predicted gene, 30821 ncRNA 12507 Mm.779 NM_007650 ENSMUSG00000024669 Cd5 Ly-1|Ly-12|Ly-A|Lyt-1 - 19 A|19 7.16 cM CD5 antigen protein-coding 100040373 Gm11523 Gm665 - 11|11 D predicted gene 11523 protein-coding 100043401 Scgb1b22-ps Abpa22-ps|Gm12772 - 7|7 B1 secretoglobin, family 1B, member 22, pseudogene pseudo 12180 Mm.234274 NM_009762 ENSMUSG00000055027 Smyd1 4632404M21Rik|Bop|C78565|Zmynd18 - 6 C1|6 32.14 cM SET and MYND domain containing 1 protein-coding 69860 Mm.299167 NM_027236 ENSMUSG00000024841 Eif1ad 2010003J03Rik|AI131644 - 19|19 A eukaryotic translation initiation factor 1A domain containing protein-coding 69135 2200001K16Rik - - - RIKEN cDNA 2200001K16 gene protein-coding 381838 Mm.247383 NM_198961 ENSMUSG00000053720 Vmn2r43 EC2-V2R|Gm1961 - 7|7 A1 vomeronasal 2, receptor 43 protein-coding 109279865 LOC109279865 Mm55 - - VISTA enhancer mm55 biological-region 52072 Mm.36863 D5Ertd77e - - 5 33.99 cM DNA segment, Chr 5, ERATO Doi 77, expressed protein-coding 71512 9030419F21Rik - - 15|15 RIKEN cDNA 9030419F21 gene protein-coding 270906 Mm.132381 NM_175563 ENSMUSG00000020493 Prr11 B930067F20Rik - 11|11 C proline rich 11 protein-coding 100126547 Gm14735 - - X|X A7.3 coiled-coil domain containing 99 pseudogene pseudo 432708 Ighv1-59 EG432708|Gm5439 - 12|12 F2 immunoglobulin heavy variable V1-59 other 85099 D5Mit250 - - 5 8.97 cM DNA segment, Chr 5, Massachusetts Institute of Technology 250 unknown 110811 Tblvi1 Tblvi-1 - - thymotropic type B leukemogenic virus integration protein-coding 100042781 Mm.469893 NM_001105072 ENSMUSG00000090864 Vmn2r40 - - 7|7 A1 vomeronasal 2, receptor 40 protein-coding 381626 Mm.304075 NM_028234 ENSMUSG00000048271 Rbm33 3200001K10Rik|6430512A10Rik|AA386890|Prr8 - 5|5 B1 RNA binding motif protein 33 protein-coding 81500 Mm.291482 NM_030749 ENSMUSG00000024357 Sil1 1810057E01Rik|AI042831|wz - 18|18 B1-B2 endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae) protein-coding 258627 Mm.453527 NM_146634 ENSMUSG00000059105 Olfr1504 MOR212-2 - 19|19 A olfactory receptor 1504 protein-coding 101563 Mm.33776 AI426330 - - - expressed sequence AI426330 protein-coding 100418324 LOC100418324 - - 11|11 A1 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 13293 Del(17)11H Del11H - - deletion, Chr 17, Harwell 11 other 627792 Gm6789 EG627792 - 18|18 E1 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 14623 Mm.25652 NM_008128 ENSMUSG00000040055 Gjb6 AA958971|Cx30|D14Bwg0506e - 14 C3|14 30.1 cM gap junction protein, beta 6 protein-coding 108201 Ass-ps1 - - - argininosuccinate synthetase pseudogene 1 pseudo 234664 Mm.237670 NM_144931 ENSMUSG00000031878 Nae1 59kDa|Appbp1 - 8|8 D3 NEDD8 activating enzyme E1 subunit 1 protein-coding 105243976 XR_872347 Gm39676 - - 11 A4|11 predicted gene, 39676 ncRNA 105245699 XR_874421 Gm41110 - - 14 A3|14 predicted gene, 41110 ncRNA 62318 D2Mit200 - - 2 102.29 cM DNA segment, Chr 2, Massachusetts Institute of Technology 200 unknown 102467532 n-TGgcc8 n-Tg29 - 2 C1.1|2 nuclear encoded tRNA glycine 8 (anticodon GCC) tRNA 102640410 XR_382828 Gm36475 - - 13 D1|13 predicted gene, 36475 ncRNA 102636964 XR_385401 Gm33889 - - 17 A2|17 predicted gene, 33889 ncRNA 50540 Mm.84043 NM_015777 ENSMUSG00000046717 Igbp1b alpha4-b - 6|6 G1 immunoglobulin (CD79A) binding protein 1b protein-coding 108169182 XM_017321876 Gm46982 - - 6 E3|6 predicted gene, 46982 protein-coding 12062 Mm.390475 NM_009747 ENSMUSG00000021070 Bdkrb2 B(2)|B2|B2R|BK-2|BK2|BK2R|BKR2|BRB2 - 12 E|12 55.76 cM bradykinin receptor, beta 2 protein-coding 29875 Mm.207619 NM_016721 ENSMUSG00000030536 Iqgap1 AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051 - 7 D3|7 45.68 cM IQ motif containing GTPase activating protein 1 protein-coding 110120510 LOC110120510 - - - VISTA enhancer mm1003 biological-region 102636938 Gm21796 - - Y|Y predicted gene, 21796 protein-coding 102640956 XR_378076 Gm36897 - - 6 G1|6 predicted gene, 36897 ncRNA 78200 Mm.455965 XR_872319 ENSMUSG00000085516 4930538E20Rik - - 11|11 A3.2 RIKEN cDNA 4930538E20 gene unknown 70464 2610312I10Rik - - 13|13 RIKEN cDNA 2610312I10 gene protein-coding 100134986 Mm.35000 Gm15498 - - 5 G2|5 predicted gene 15498 protein-coding 100048977 Wtmq6 mQTL12a - - weight module QTL 6 unknown 102639187 LOC102639187 - - X A1.2 myeloma-overexpressed gene 2 protein homolog pseudogene pseudo 171259 Mm.432535 NM_134225 ENSMUSG00000046932 Vmn1r193 V1ri9 - 13|13 A3.1 vomeronasal 1 receptor 193 protein-coding 102636426 XR_377080 Gm33491 - - 5 G1.2|5 predicted gene, 33491 ncRNA 105245720 Gm17210 - - 14|14 19.4 cM predicted gene 17210 ncRNA 105244902 XR_872774 Gm40426 - - 12 C1|12 predicted gene, 40426 ncRNA 106660634 LOC106660634 - - 16 B3-B4 adiponectin enhancer region biological-region 102638028 XR_001782683 ENSMUSG00000092250 Gm20467 - - 19 C3|19 36.67 cM predicted gene 20467 ncRNA 73550 Mm.398290 1700105G05Rik - - 12|12 RIKEN cDNA 1700105G05 gene protein-coding 100035103 Manln14 - - 13 42.19 cM mandible length 14 unknown 100416535 Gm18154 - - 15|15 D1 MIS12 homolog pseudogene pseudo 112341 Lore5 - - - loss of righting induced by ethanol 5 unknown 105245255 XR_871932 Gm40733 - - 10 C1|10 predicted gene, 40733 ncRNA 667817 Gm14427 - - 2|2 C3 ribosomal protein S8 pseudogene pseudo 102634267 XR_377515 Gm31894 - - 6 A3.3|6 predicted gene, 31894 ncRNA 105243158 XR_870303 Gm39155 - - 8 A3|8 predicted gene, 39155 ncRNA 620140 Ighv1-83 EG620140|Gm6131 - 12|12 F2 immunoglobulin heavy variable 1-83 other 83380 Mm.333439 NM_031499 ENSMUSG00000058295 Prp2 MP14 - 6|6 G1 proline rich protein 2 protein-coding 57081 D5Kng2 - - - DNA segment, Chr 5, Kingsley 2 unknown 93722 Mm.247203 NM_033593 ENSMUSG00000102222 Pcdhga10 - - 18|18 B3 protocadherin gamma subfamily A, 10 protein-coding 102640288 XR_381158 Gm36395 - - 11 A4|11 predicted gene, 36395 ncRNA 105245122 XR_871527 Gm40616 - - 10 A4|10 predicted gene, 40616 ncRNA 105243557 XR_880291 Gm39446 - - 11 E2|11 predicted gene, 39446 ncRNA 268795 Rpl7a-ps3 EG268795|Gm5044 - 15|15 B3.1 ribosomal protein L7A, pseudogene 3 pseudo 100039704 Mm.427534 Gm2379 - - 13 D1|13 predicted gene 2379 ncRNA 68151 Mm.6766 NM_026582 ENSMUSG00000028173 Wls 5031439A09Rik|AI173978|AI987742|EVI|Gpr177 - 3|3 H4 wntless WNT ligand secretion mediator protein-coding 100036500 Nilac1 - - 11 15.63 cM nicotine induced locomotor activity 1 unknown 105246039 Gm41400 - - 15|15 predicted gene, 41400 ncRNA 108167833 XR_001779855 Gm46242 - - 1 D|1 predicted gene, 46242 ncRNA 241035 Mm.249253 NM_153179 ENSMUSG00000043760 Pkhd1 AI118496|AI182499|FPC|Tigm1 - 1|1 A3-A4 polycystic kidney and hepatic disease 1 protein-coding 71676 Mm.443330 0610012D04Rik - - 17|17 RIKEN cDNA 0610012D04 gene protein-coding 27676 D11Moh33 - - 11 59.01 cM DNA segment, Chr 11, KL Mohlke 33 unknown 628161 Gm6851 EG628161 - 7|7 B3 predicted pseudogene 6851 protein-coding 319407 D630033L23Rik - - 11|11 RIKEN cDNA D630033L23 gene protein-coding 16407 Mm.96 NM_008399 ENSMUSG00000005947 Itgae A530055J10|CD103|aM290|alpha-E1|alpha-M290 - 11 B4|11 45.22 cM integrin alpha E, epithelial-associated protein-coding 97064 Mm.405029 NM_133784 ENSMUSG00000027803 Wwtr1 2310058J06Rik|2610021I22Rik|C78399|Taz - 3|3 D WW domain containing transcription regulator 1 protein-coding 258913 Mm.451670 NM_146911 ENSMUSG00000061952 Olfr1377 MOR129-1 - 11|11 B1.3 olfactory receptor 1377 protein-coding 107754 Dipl1 - - - diploid oocytes, metaphase I arrested protein-coding 100163 Mm.22116 NM_133880 ENSMUSG00000037366 Pafah2 2310074E22Rik|AI507170 - 4|4 D3 platelet-activating factor acetylhydrolase 2 protein-coding 100861683 Gm21133 - - Y A1|Y predicted gene, 21133 pseudo 102633093 XR_383742 Gm31003 - - 14 E4|14 predicted gene, 31003 ncRNA 625941 Gm6638 - - 6|6 D2 prefoldin 4 pseudogene pseudo 77226 9330169L03Rik - - - RIKEN cDNA 9330169L03 gene unknown 100861660 Gm21112 - - 8|8 predicted gene, 21112 pseudo 66401 Mm.28574 NM_025539 ENSMUSG00000028443 Nudt2 2310051L06Rik|AA939917|APAH1 - 4|4 A5 nudix (nucleoside diphosphate linked moiety X)-type motif 2 protein-coding 105242774 XR_869462 Gm38900 - - 6 F3|6 predicted gene, 38900 ncRNA 105244725 XR_868347 Gm40283 - - 5 B2|5 predicted gene, 40283 ncRNA 105244567 XR_867685 Gm40160 - - 3 H1|3 predicted gene, 40160 ncRNA 108167822 XR_001779816 Gm46235 - - 1 B|1 predicted gene, 46235 ncRNA 777665 Ighd5-5 Gm17700 - 12|12 F1 immunoglobulin heavy diversity 5-5 pseudo 108168299 XR_001781978 Gm46560 - - 16 B2|16 predicted gene, 46560 ncRNA 236892 Gm4911 EG236892 - X|X C2 melanoma antigen, family B, 5 pseudogene pseudo 73991 Mm.474462 NM_178628 ENSMUSG00000021066 Atl1 4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a - 12|12 C2 atlastin GTPase 1 protein-coding 102638661 XR_389386 Gm35172 Gm43253 - 5 E4|5 predicted gene, 35172 ncRNA 105243944 XM_011238638 ENSMUSG00000115378 Gm39653 - - 1 C2|1 predicted gene, 39653 protein-coding 12864 Mm.548 NM_053071 ENSMUSG00000014313 Cox6c - - 15|15 B3.1 cytochrome c oxidase subunit VIc protein-coding 19502 Rb(16.17)8Lub Rb8Lub - - Robertsonian translocation, Chr 16 and 17, Lubeck 8 other 61548 D9Mit143 - - 9 33.15 cM DNA segment, Chr 9, Massachusetts Institute of Technology 143 unknown 102631498 XR_378797 Gm29821 - - 8 A2|8 predicted gene, 29821 ncRNA 76797 Mm.159787 NM_029747 ENSMUSG00000064308 2410137M14Rik - - 17|17 B1 RIKEN cDNA 2410137M14 gene protein-coding 667370 Mm.271850 NM_001005858 ENSMUSG00000062488 Ifit3b I830012O16Rik - 19|19 C1 interferon-induced protein with tetratricopeptide repeats 3B protein-coding 18314 Mm.103814 NM_020598 ENSMUSG00000073897 Olfr17 MOR263-5|P2 - 7|7 E3 olfactory receptor 17 protein-coding 244556 Mm.334682 NM_001037745 ENSMUSG00000074194 Zfp791 EG244556 - 8 C3|8 zinc finger protein 791 protein-coding 102638106 Gm34747 - - 13|13 predicted gene, 34747 protein-coding 108167748 XR_001779565 Gm46174 - - 1 H4|1 predicted gene, 46174 ncRNA 67746 Mm.441177 NR_073429 ENSMUSG00000087440 4930577N17Rik - - 3|3 C RIKEN cDNA 4930577N17 gene ncRNA 100418164 Gm19046 - - 12|12 A3 non-POU-domain-containing, octamer binding protein pseudogene pseudo 100862274 XM_003688963 ENSMUSG00000095637 Btbd35f25 Gm21608 - X A3.1|X BTB domain containing 35, family member 25 protein-coding 100503457 Mm.484244 Gm19703 - - 14|14 22.36 cM predicted gene, 19703 unknown 59008 Mm.332667 NM_021505 ENSMUSG00000029472 Anapc5 2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5 - 5|5 F anaphase-promoting complex subunit 5 protein-coding 100034977 Depmq1 - - 1 44.69 cM dependence on morphine QTL 1 unknown 100503466 Gm19709 - - 9 A5.1|9 20.9 cM RNA-binding protein MEX3C-like pseudo 102465961 NR_105759 ENSMUSG00000098555 Mir6341 Gm27262|mmu-mir-6341 - 1|1 A3 microRNA 6341 ncRNA 102634945 XR_384173 Gm32405 - - 15 D3|15 predicted gene, 32405 ncRNA 666909 Gm8357 EG666909 - 1|1 C1.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100035460 Vmmt17 - - - vertebral morphology and mechanical traits 17 unknown 21274 T(8A4;12D1)69Dn T(8;12)69Dn|T69Dn - - reciprocal translocation, Chr 8, cytogenetic band A4; and Chr 12, cytogenetic band D1, Davisson 69 other 105245130 XR_871580 Gm40624 - - 10 B1|10 predicted gene, 40624 ncRNA 52508 D14Ertd574e - - 14 16.09 cM DNA segment, Chr 14, ERATO Doi 574, expressed unknown 67832 Mm.28057 NM_026396 ENSMUSG00000022247 Brix1 1110064N10Rik|Bxdc2|C76935 - 15|15 A1 BRX1, biogenesis of ribosomes protein-coding 108167752 XM_017314110 Gm46175 - - 1 H5|1 predicted gene, 46175 protein-coding 108168548 XM_017318738 ENSMUSG00000100892 LOC108168548 - - Y B X-linked lymphocyte-regulated protein PM1-like protein-coding 102640145 XR_390613 Gm21286 - - 4 B3|4 predicted gene, 21286 ncRNA 666543 Gm8157 EG666543 - 19|19 A predicted gene 8157 pseudo 108251800 LOC108251800 - - - Pax4 5' regulatory region biological-region 241052 Mm.463312 C230030N03Rik - - 1|1 B RIKEN cDNA C230030N03 gene unknown 100041166 Gm3176 - - 5 E3|5 predicted gene 3176 pseudo 100306952 Mm.484806 NR_028515 ENSMUSG00000089255 Snora78 ACA64 - 17|17 A3.3 small nucleolar RNA, H/ACA box 7 snoRNA 16748 l1Rk7 l(1)-7Rk - - lethal, Chr 1, Roderick 7 unknown 105245573 XR_873715 Gm41013 - - 13 C3|13 predicted gene, 41013 ncRNA 111560 Xmv10 Xmv-10 - - xenotropic murine leukemia virus 10 other 100417848 Gm11911 - - 4|4 A3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo 545655 Mm.380020 NM_001161610 ENSMUSG00000094648 Gm13287 - - 4 C4|4 predicted gene 13287 protein-coding 69585 Mm.171314 NM_027126 ENSMUSG00000038403 Hfe2 2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin - 3|3 F2.1 hemochromatosis type 2 (juvenile) protein-coding 102631786 XR_380224 Gm30034 - - 10 A4|10 predicted gene, 30034 ncRNA 102238520 LOC102238520 - - 17 C polymerase (RNA) II (DNA directed) polypeptide K pseudogene pseudo 18423 Mm.129663 NM_011023 ENSMUSG00000005917 Otx1 A730044F23Rik|jv - 11 A3.2|11 14.1 cM orthodenticle homeobox 1 protein-coding 108168481 XR_001782836 LOC108168481 - - X D uncharacterized LOC108168481 ncRNA 27901 D16Ium64 - - 16 36.12 cM DNA segment, Chr 16, Indiana University Medical 64 unknown 100126789 Wg2b - - - weight gain in high growth mice 2b unknown 108167432 XR_001778160 LOC108167432 - - 7 C uncharacterized LOC108167432 ncRNA 61185 D19Mit52 - - 19 11.02 cM DNA segment, Chr 19, Massachusetts Institute of Technology 52 unknown 69487 Mm.287921 NM_027093 ENSMUSG00000027384 Ndufaf5 2310003L22Rik - 2|2 F3 NADH dehydrogenase (ubiquinone) complex I, assembly factor 5 protein-coding 21186 T(4;7)1Rl TRl - - reciprocal translocation, Chr 4 and 7, Russell 1 other 623529 Gm11255 - - 4|4 C3 casein kinase 2, alpha 1 polypeptide pseudogene pseudo 665975 Gm7873 EG665975 - 16|16 A3 predicted gene 7873 protein-coding 14547 Mm.279228 NM_010269 ENSMUSG00000027865 Gdap2 C77050|D3Ertd801e - 3|3 F2.2 ganglioside-induced differentiation-associated-protein 2 protein-coding 62592 D13Mit110 - - - DNA segment, Chr 13, Massachusetts Institute of Technology 110 unknown 108167951 XM_017315283 Gm46310 - - 12 A1.3|12 predicted gene, 46310 protein-coding 385474 Gm5398 EG385474 - X|X A7.3 cathepsin H pseudogene pseudo 623257 Gm11400 - - 11 A1|11 predicted gene 11400 pseudo 319269 NR_002860 A130040M12Rik CA782090|H3053C11|VL30 - 11 C|11 RIKEN cDNA A130040M12 gene other 664960 Gm7426 EG664960 - 13|13 A1 embryonic H3 histone pseudo 100034826 Ltq1 Ltq - 8 28.85 cM lung tumor QTL 1 unknown 110120495 LOC110120495 - - - VISTA enhancer mm1464 biological-region 235327 Mm.246604 NM_177701 ENSMUSG00000054156 Gm4894 A430041E03|EG235327 - 9 A5.3|9 predicted gene 4894 protein-coding 629337 Gm6963 EG629337 - 10|10 B1 predicted gene 6963 pseudo 73703 Mm.27857 NM_028615 ENSMUSG00000072419 Dppa2 2410088E07Rik|C80932|D19Mgi18|ECAT15-2 - 16|16 B5 developmental pluripotency associated 2 protein-coding 61268 D2Mit212 - - 2 70.27 cM DNA segment, Chr 2, Massachusetts Institute of Technology 212 unknown 102638 AL022900 - - - expressed sequence AL022900 unknown 171463 Mm.206726 NM_027265 ENSMUSG00000040717 Il17rd 2810004A10Rik|AI428510|Sef|Sef-S - 14|14 A3 interleukin 17 receptor D protein-coding 102636882 XR_389296 Gm33832 - - 5 C3.3|5 predicted gene, 33832 ncRNA 226180 Mm.276251 NM_146100 ENSMUSG00000034336 Ina AV028420|NF-66|NF66 - 19|19 C3 internexin neuronal intermediate filament protein, alpha protein-coding 102635227 Gm32619 - - 7|7 predicted gene, 32619 pseudo 19493 Rb(16.17)54Lub Rb54Lub - - Robertsonian translocation, Chr 16 and 17, Lubeck 54 other 233876 Mm.363427 NM_172746 ENSMUSG00000042606 Hirip3 B130036O03|C86302 - 7|7 F3 HIRA interacting protein 3 protein-coding 102637906 XR_001779590 Gm34602 - - 1 H5|1 predicted gene, 34602 ncRNA 105247602 Mm.401970 XR_001784244 Gm11840 - - 4 A1|4 5.52 cM predicted gene 11840 ncRNA 78373 Mm.423186 NM_030094 ENSMUSG00000028100 Nudt17 2410015C20Rik - 3|3 F2.1 nudix (nucleoside diphosphate linked moiety X)-type motif 17 protein-coding 62784 D15Mit218 - - 15 52.91 cM DNA segment, Chr 15, Massachusetts Institute of Technology 218 unknown 17709 COX2 - - - cytochrome c oxidase subunit II protein-coding 100041973 Gm20895 - - Y|Y predicted gene, 20895 protein-coding 257875 Mm.424863 NM_001011734 ENSMUSG00000070855 Olfr1116 MOR264-21P|MOR264-8P|Olfr1116-ps|Olfr1521-ps1 - 2|2 D olfactory receptor 1116 protein-coding 100534387 LOC100534387 - - 4|4 E1 protein phosphatase 2, regulatory subunit B (B56), alpha isoform pseudogene pseudo 108198 Krt31-ps Krt1-ps - - keratin 31, pseudogene pseudo 100861978 Mm.6660 NM_001267702 ENSMUSG00000095247 LOC100861978 - - - c-C motif chemokine 27-like protein-coding 19734 Mm.181709 NM_011267 ENSMUSG00000026475 Rgs16 Rgs14|Rgsr - 1 G3|1 65.43 cM regulator of G-protein signaling 16 protein-coding 20410 Mm.5068 NM_011366 ENSMUSG00000022091 Sorbs3 SCAM-1|SH3P3|Sh3d4|vinexin-g - 14 D2|14 36.27 cM sorbin and SH3 domain containing 3 protein-coding 232086 Mm.491165 NM_144916 ENSMUSG00000055912 Tmem150a BC014685|Tmem150 - 6|6 C1 transmembrane protein 150A protein-coding 16589 Mm.209150 NM_010633 ENSMUSG00000026667 Uhmk1 4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|P-CIP2 - 1|1 H3 U2AF homology motif (UHM) kinase 1 protein-coding 70574 Mm.339332 NM_027468 ENSMUSG00000020183 Cpm 1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik - 10|10 D2 carboxypeptidase M protein-coding 105246953 XR_880522 Gm42146 - - 5 E5|5 predicted gene, 42146 ncRNA 112046 Start1 - - - startle response 1 unknown 102632377 XR_387640 Gm30466 - - 5 F|5 predicted gene, 30466 ncRNA 19174 Psmb5-ps - - 11 E1|11 66.48 cM proteasome (prosome, macropain) subunit, beta type 5, pseudogene pseudo 111371 Emv1 C3v|Cv-1|Emv-1|Inc-1|Rjv-2 - - endogenous ecotropic MuLV 1 other 100418318 Gm19136 - - 1|1 G1 heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene pseudo 61595 D9Mit278 - - 9 58.48 cM DNA segment, Chr 9, Massachusetts Institute of Technology 278 unknown 23928 Mm.69566 NM_011836 ENSMUSG00000026840 Lamc3 1110064A23Rik|AI562206|AW240805 - 2|2 B laminin gamma 3 protein-coding 14423 Mm.30249 NM_013814 ENSMUSG00000000420 Galnt1 - - 18|18 A2 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 620246 Mm.478780 NM_001146330 Gpr52 EG620246 - 1|1 H2.1 G protein-coupled receptor 52 protein-coding 100043607 Gm4548 - - 7|7 A3 chromobox protein homolog 3 pseudogene pseudo 624424 Gm12612 - - 11|11 B2 poly(A) binding protein, cytoplasmic 4 pseudogene pseudo 105242542 XR_868640 Gm38726 - - 5 G2|5 predicted gene, 38726 ncRNA 665281 Rps12-ps22 EG665281|Gm7567 - X|X E3 ribosomal protein S12, pseudogene 22 pseudo 665956 Mm.484981 NM_001177526 ENSMUSG00000079113 Gm7861 EG665956 - 8|8 A2 predicted gene 7861 protein-coding 100041356 Mm.387254 Gm3287 100041364|100041371|Gm3291|Gm3296 - 14 C1|14 predicted gene 3287 ncRNA 102467516 n-TQttg5 n-Tq15 - 13 A3.1|13 nuclear encoded tRNA glutamine 5 (anticodon TTG) tRNA 100047282 Gm20568 - - 3|3 predicted gene, 20568 pseudo 66419 Mm.28494 NM_025553 ENSMUSG00000024902 Mrpl11 2410001P07Rik|L11mt - 19|19 A mitochondrial ribosomal protein L11 protein-coding 74249 Mm.307615 NM_028838 ENSMUSG00000032495 Lrrc2 2400002D05Rik|4933431K03Rik - 9 60.79 cM|9 F2 leucine rich repeat containing 2 protein-coding 110120507 LOC110120507 - - - VISTA enhancer mm1518 biological-region 21803 Mm.248380 NM_011577 ENSMUSG00000002603 Tgfb1 TGF-beta1|TGFbeta1|Tgfb|Tgfb-1 - 7 A3|7 13.98 cM transforming growth factor, beta 1 protein-coding 17532 Mm.2045 NM_008624 ENSMUSG00000032470 Mras 2900078C09Rik|AI326250 - 9|9 E3.3 muscle and microspikes RAS protein-coding 258532 Mm.377557 NM_146539 ENSMUSG00000061561 Olfr373 MOR282-2 - 8|8 B3.3 olfactory receptor 373 protein-coding 102465643 NR_106029 ENSMUSG00000099092 Mir7062 Gm27339|mmu-mir-7062 - 7|7 F4 microRNA 7062 ncRNA 60951 DXMit65 - - X 47.86 cM DNA segment, Chr X, Massachusetts Institute of Technology 65 unknown 68956 1500006G06Rik - - 4|4 RIKEN cDNA 1500006G06 gene protein-coding 277414 Mm.41033 NM_001025246 ENSMUSG00000068735 Trp53i11 Tp53i11 - 2|2 E1 transformation related protein 53 inducible protein 11 protein-coding 102634093 XR_385767 Gm31759 - - 17 E2|17 predicted gene, 31759 ncRNA 65970 Mm.33207 NM_023063 ENSMUSG00000023022 Lima1 Eplin - 15 F1|15 56.13 cM LIM domain and actin binding 1 protein-coding 110989 Rnu1-ps1 Rnu1-1 - - U1 small nuclear RNA pseudogene 1 pseudo 102634382 Gm31978 - - 19|19 predicted gene, 31978 ncRNA 100036465 Advh1 - - - adenovirus induced hyperthyroidism 1 unknown 102633142 Gm31044 - - 15|15 predicted gene, 31044 ncRNA 100042925 Gm4111 - - 16|16 A1 COX11 homolog, cytochrome c oxidase assembly protein pseudogene pseudo 108168081 XR_001780934 LOC108168081 - - 13 A5 uncharacterized LOC108168081 ncRNA 61619 D8Mit280 - - 8 74.66 cM DNA segment, Chr 8, Massachusetts Institute of Technology 280 unknown 544800 Gm12346 EG544800 - 11|11 B5 heat shock protein 1, alpha pseudogene pseudo 108167642 Gm46106 - - 9 A4|9 protein CEBPZOS pseudogene pseudo 102638998 Gm35423 - - 1|1 predicted gene, 35423 ncRNA 492985 Kidq5 - - - kidney weight QTL 5 unknown 69556 Mm.34183 NM_001024919 ENSMUSG00000044502 Bod1 2310022M17Rik|BOD2.1|Fam44b - 11 A4|11 18.55 cM biorientation of chromosomes in cell division 1 protein-coding 72614 Mm.147232 NM_028300 ENSMUSG00000000167 Pih1d2 2700059L22Rik - 9|9 A5.3 PIH1 domain containing 2 protein-coding 75693 Mm.287381 NR_045451 ENSMUSG00000084885 3010001F23Rik - - X|X F3 RIKEN cDNA 3010001F23 gene ncRNA 102635589 Gm11020 - - 8|8 53.04 cM predicted gene 11020 ncRNA 170735 Mm.95518 NM_133205 ENSMUSG00000060890 Arr3 Arr4|Car|Carfl|Carr - X|X C3 arrestin 3, retinal protein-coding 67850 Mm.416968 NR_040538 ENSMUSG00000100666 1700007F19Rik - - 3|3 D RIKEN cDNA 1700007F19 gene ncRNA 102636508 XR_377919 Gm33554 - - 6 D3|6 predicted gene, 33554 ncRNA 74059 Mm.292321 NR_046037 ENSMUSG00000086025 4933406G16Rik - - 11|11 A3.1 RIKEN cDNA 4933406G16 gene ncRNA 102465558 NR_105891 ENSMUSG00000098317 Mir6926 Gm27949|mmu-mir-6926 - 11|11 B5 microRNA 6926 ncRNA 67138 Mm.297393 NM_025992 ENSMUSG00000029798 Herc6 1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5 - 6 B3|6 hect domain and RLD 6 protein-coding 258986 Olfr4 K20|MOR227-2|ORL112 - 2 E1|2 olfactory receptor 4 complex other 381073 Mm.291772 NM_001099664 ENSMUSG00000071230 Npw Gm935 - 17|17 A3.3 neuropeptide W protein-coding 434402 Mm.386950 NM_001004191 ENSMUSG00000042293 Gm5617 EG434402 - 9|9 A5.3 predicted gene 5617 protein-coding 224405 Mm.213203 NM_144853 ENSMUSG00000041134 Cyyr1 - - 16 C3.3|16 47.45 cM cysteine and tyrosine-rich protein 1 protein-coding 113872 Vmn1r-ps28 V1RB3|V1r-ps4 - 6|6 D1 vomeronasal 1 receptor, pseudogene 28 pseudo 27944 D9Nds2 - - 9 43.68 cM DNA segment, Chr 9, Nuffield Department of Surgery 2 unknown 100041307 Gm15387 - - 15|15 D3 high mobility group protein 1 pseudogene pseudo 102639157 XR_386932 Gm35536 - - X A5|X predicted gene, 35536 ncRNA 104246 Msg - - - metastic suppressing gene protein-coding 667214 Mm.441306 NM_001114679 ENSMUSG00000069893 9930111J21Rik1 9930111J21Rik|Iigp - 11|11 B1.2 RIKEN cDNA 9930111J21 gene 1 protein-coding 621442 Gm14414 - - 2|2 H4 ribosomal protein S8 pseudogene pseudo 101055641 Gm29704 - - 3 F1|3 predicted gene, 29704 pseudo 102635309 XR_379792 Gm32682 - - 9 F1|9 predicted gene, 32682 ncRNA 102634801 Gm28837 - - Y|Y predicted gene 28837 pseudo 52634 D11Ertd506e - - 11 19.21 cM DNA segment, Chr 11, ERATO Doi 506, expressed unknown 100042961 Gm13877 - - 2|2 E2 predicted gene 13877 pseudo 105246428 XR_877373 Gm41718 - - 18 C|18 predicted gene, 41718 ncRNA 102640225 Gm36345 - - Y|Y predicted gene, 36345 ncRNA 171245 Mm.377201 NM_134211 Vmn1r-ps103 V1rh1 - 13|13 A3.1 vomeronasal 1 receptor, pseudogene 103 protein-coding 102631691 LOC102631691 - - 2 D protein transport protein Sec61 subunit gamma pseudogene pseudo 434113 Mm.469891 NM_001105074 ENSMUSG00000094098 Vmn2r44 EG434113 - 7|7 A1 vomeronasal 2, receptor 44 protein-coding 100416132 Gm11873 - - 4|4 A3 tubulin, alpha 4A pseudogene pseudo 105244024 XR_001779570 Gm39712 - - 1 H4|1 predicted gene, 39712 ncRNA 100036010 Brml6 - - - bone response to mechanical loading 6 unknown 100417833 Gm18854 - - 7|7 A1 zinc finger and SCAN domain containing 4C pseudogene pseudo 735283 NR_030483 ENSMUSG00000076240 Mir702 Mirn702|mir-702|mmu-mir-702 - 5 G2|5 microRNA 702 ncRNA 102633543 XR_384160 Gm31342 - - 15 D2|15 predicted gene, 31342 ncRNA 12769 Mm.440604 NM_009913 ENSMUSG00000029530 Ccr9 A130091K22Rik|Cmkbr10|GPR-9-6 - 9 F4|9 74.33 cM chemokine (C-C motif) receptor 9 protein-coding 102635315 XM_006514359 ENSMUSG00000112640 Gm32687 - - 10 C1|10 predicted gene, 32687 protein-coding 667178 Gm8497 EG667178 - 17|17 B1 predicted gene 8497 pseudo 108168583 XM_017318787 LOC108168583 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 258238 Mm.377274 NM_207137 ENSMUSG00000066672 Olfr417 GA_x5J8B7W3B3M-312879-313274|GA_x6K02T2P20D-20787051-20786119|MOR267-11 - 1|1 H3 olfactory receptor 417 protein-coding 723913 NR_029917 ENSMUSG00000065570 Mir412 Mirn412|mir-412|mmu-mir-412 - 12 F1|12 microRNA 412 ncRNA 68549 Mm.32800 NM_199007 ENSMUSG00000026039 Sgo2a 1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin - 1 C1.3|1 28.86 cM shugoshin 2A protein-coding 100034812 Lbm7 - - - lean body mass 7 unknown 100042903 Gm4101 - - 12|12 A1.3 predicted gene 4101 pseudo 71893 Mm.390971 NM_027988 ENSMUSG00000019320 Noxo1 2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt - 17 A3.3|17 12.49 cM NADPH oxidase organizer 1 protein-coding 319648 4732468M13Rik - - X|X RIKEN cDNA 4732468M13 gene protein-coding 231659 Mm.153014 NM_172719 ENSMUSG00000041638 Gcn1l1 4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219 - 5|5 F GCN1 general control of amino-acid synthesis 1-like 1 (yeast) protein-coding 105247193 XR_881522 Gm42332 - - 4 D3|4 predicted gene, 42332 ncRNA 105246980 XR_880612 Gm42168 - - X A2|X predicted gene, 42168 ncRNA 68369 Mm.441136 NR_045760 ENSMUSG00000099146 0610031O16Rik - - 3|3 G3 RIKEN cDNA 0610031O16 gene ncRNA 110434 Evi19 - - - ecotropic viral integration site 19 protein-coding 102636331 XR_377551 Gm33429 - - 6 B1|6 predicted gene, 33429 ncRNA 72017 Mm.280230 NM_028057 ENSMUSG00000026456 Cyb5r1 1500005G05Rik|B5R.1|C80155|Nqo3a2 - 1|1 E4 cytochrome b5 reductase 1 protein-coding 61136 D9Mit325 - - 9 18.24 cM DNA Segment, Chr 9 Massachusetts Institute of Technology 325 unknown 100416792 Gm18254 - - 7|7 B2 SCAN domain containing 3 pseudogene pseudo 97218 C77576 - - - expressed sequence C77576 unknown 60933 D9Mit88 - - 9 16.12 cM DNA segment, Chr 9, Massachusetts Institute of Technology 88 unknown 78045 Mm.444566 4930564I24Rik - - 2|2 RIKEN cDNA 4930564I24 gene protein-coding 66349 Mm.159956 NM_025504 ENSMUSG00000057229 Dmac2 2310004L02Rik|Atp5sl|C030044E10Rik - 7|7 A3 distal membrane arm assembly complex 2 protein-coding 100035521 Pbrbc3 - - - peripheral blood RBC 3 unknown 109280005 LOC109280005 Mm938 - - VISTA enhancer mm938 biological-region 105245016 Gm40530 - - 9|9 predicted gene, 40530 ncRNA 225392 Mm.233516 NM_153793 ENSMUSG00000044024 Rell2 4631403P03Rik|ependolin - 18|18 B3 RELT-like 2 protein-coding 108168935 XR_001784262 Gm46849 - - 4 A5|4 predicted gene, 46849 ncRNA 435302 Gm5653 - - 12|12 C1 catenin (cadherin associated protein), alpha 2 pseudogene pseudo 15267 Mm.5220 NM_013549 ENSMUSG00000064220 Hist2h2aa1 AI448581|H2a-614|H2a-615|Hist2 - 3 F2.1|3 41.69 cM histone cluster 2, H2aa1 protein-coding 71782 Mm.288442 NM_027922 ENSMUSG00000029501 Ankle2 1110001J12Rik|AI661024|D5Ertd585e - 5 F|5 53.4 cM ankyrin repeat and LEM domain containing 2 protein-coding 102637647 XR_386854 Gm34406 - - 19 D3|19 predicted gene, 34406 ncRNA 107652 Mm.27969 NM_133806 ENSMUSG00000026670 Uap1 AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2 - 1|1 H3 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 102640585 Mm.412560 Gm36615 - - 11|11 predicted gene, 36615 ncRNA 244548 Mm.38762 NM_178736 ENSMUSG00000035151 Elmod2 9830169G11Rik - 8|8 C2 ELMO/CED-12 domain containing 2 protein-coding 673535 Gm9598 - - 17|17 E1.3 NSA2 ribosome biogenesis homolog pseudogene pseudo 100036218 Fcsa1 - - 6 39.71 cM femoral cross-sectional area 1 unknown 61868 D1Mit352 - - - DNA segment, Chr 1, Massachusetts Institute of Technology 352 unknown 668674 Gm12494 - - 3|3 F2.3 predicted gene 12494 pseudo 102641038 LOC102641038 - - - Y-linked testis-specific protein 1-like pseudo 67948 Mm.30737 NM_175127 ENSMUSG00000047539 Fbxo28 4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483 - 1 H5|1 84.93 cM F-box protein 28 protein-coding 207146 Bbaa22 Bb22 - - B.burgdorferi-associated arthritis 22 unknown 735253 NR_030441 ENSMUSG00000070103 Mir488 Mirn488|mir-488|mmu-mir-488 - 1 H1|1 microRNA 488 ncRNA 100503175 Mm.426422 NR_136921 ENSMUSG00000101942 Gm19582 - - 1 D|1 44.44 cM predicted gene, 19582 ncRNA 53170 6d12h11-1092 - - - DNA segment, 6d12h11-1092 unknown 637939 Mark1-ps2 EG637939|Gm7225 - 17|17 C MAP/microtubule affinity-regulating kinase 1, pseudogene 2 protein-coding 320158 Mm.121274 NM_177086 ENSMUSG00000037492 Zmat4 9630048M01Rik - 8|8 A2 zinc finger, matrin type 4 protein-coding 100036403 Rfpw2 Rf2 - - retroperitoneal fat pad weight 2 unknown 100416653 Gm14576 - - X|X A4 zinc finger protein 259 pseudogene pseudo 93878 Mm.44755 NM_053132 ENSMUSG00000045062 Pcdhb7 Pcdhb4B|PcdhbG - 18|18 B3 protocadherin beta 7 protein-coding 100036281 W6q2 - - - weight 6 weeks QTL 2 unknown 100038543 Gm10832 - - 16 A1-A2|16 predicted gene 10832 ncRNA 26384 Mm.22374 NM_011937 ENSMUSG00000052102 Gnpda1 GNPDA|Gnp1|Gnpi|oscillin - 18|18 B3 glucosamine-6-phosphate deaminase 1 protein-coding 12912 Mm.422634 NM_009952 ENSMUSG00000025958 Creb1 2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1 - 1 C2|1 32.74 cM cAMP responsive element binding protein 1 protein-coding 671621 Gm9537 - - 14|14 C2 enolase 1, alpha non-neuron pseudogene pseudo 28097 DYzEms3 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 3 unknown 244416 Mm.247126 NM_177741 ENSMUSG00000046794 Ppp1r3b 6430576E21|AW821953|GL|PTG - 8|8 A4 protein phosphatase 1, regulatory (inhibitor) subunit 3B protein-coding 102633963 Gm31660 - - 6|6 predicted gene, 31660 ncRNA 67231 Mm.288733 NM_024196 ENSMUSG00000027465 Tbc1d20 1110028I04Rik|2810442O16Rik|AI414693|bs - 2|2 G3 TBC1 domain family, member 20 protein-coding 27140 Mm.25362 NM_019916 ENSMUSG00000040610 Tlx3 Hox11l2|Rnx|Tlx1l2 - 11|11 A4 T cell leukemia, homeobox 3 protein-coding 667247 Gm13310 - - 2|2 A1 karyopherin (importin) alpha 2 pseudogene pseudo 108167456 XR_001778260 Gm45998 - - 7 F1|7 predicted gene, 45998 ncRNA 20383 Mm.6787 NM_013663 ENSMUSG00000071172 Srsf3 AL024116|Sfrs3|X16 - 17 A3.3|17 15.03 cM serine/arginine-rich splicing factor 3 protein-coding 100035507 Mfat1 - - - M-line adipose tissue, general adiposity 1 unknown 111465 L1Md-A1 L1Md-9(Hbb)|L1Md9-1 - - L1 repeat, A subfamily, member 1 other 105244716 Gm40274 - - 5|5 predicted gene, 40274 ncRNA 258014 Olfr941-ps1 MOR171-35P - 9|9 A5.1 olfactory receptor 941, pseudogene 1 pseudo 100312521 Vmn1r-ps89 - - 7|7 vomeronasal 1 receptor Vmn1r-ps89 pseudogene pseudo 100039114 Mm.363436 Gm11497 - - 11|11 C predicted gene 11497 unknown 102634962 XR_391527 Gm27252 - - 7 C|7 predicted gene 27252 ncRNA 18170 nr - - - nervous unknown 105242421 XR_875919 Gm45919 - - 16 A1|16 predicted gene, 45919 ncRNA 106391 Mm.442577 AW107722 - - - expressed sequence AW107722 unknown 107925 Gdcr1 Gdcr-1 - - glycerolphosphate dehydrogenase regulator 1 protein-coding 100040690 Gm13263 Gm2909 - 2|2 A1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 pseudogene pseudo 383435 XM_006527510 ENSMUSG00000099398 Ms4a14 Gm1276|SP3111 - 19|19 A membrane-spanning 4-domains, subfamily A, member 14 protein-coding 17831 Mm.2041 NM_023566 Muc2 2010015E03Rik|MCM|wnn - 7 F5|7 87.1 cM mucin 2 protein-coding 100416376 Gm18081 - - 14|14 D3 predicted gene, 18081 pseudo 258615 Mm.271468 NM_146622 ENSMUSG00000083361 Olfr360 MOR159-1 - 2|2 B olfactory receptor 360 protein-coding 319181 Mm.261673 NM_178196 ENSMUSG00000058385 Hist1h2bg - - 13|13 A3.1 histone cluster 1, H2bg protein-coding 62217 D16Mit59 - - 16 26.86 cM DNA segment, Chr 16, Massachusetts Institute of Technology 59 unknown 30921 A730014G21Rik AI225819 - - RIKEN cDNA A730014G21 gene protein-coding 13982 Mm.9213 NM_007956 ENSMUSG00000019768 Esr1 ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1 - 10 A1|10 2.03 cM estrogen receptor 1 (alpha) protein-coding 56358 Mm.22144 NM_019877 ENSMUSG00000018672 Copz2 1110012D12Rik|zeta2-COP - 11|11 D coatomer protein complex, subunit zeta 2 protein-coding 61886 D1Mit306 - - 1 47.76 cM DNA segment, Chr 1, Massachusetts Institute of Technology 306 unknown 105242798 Mm.398227 NR_151454 1700055D16Rik - - 6|6 G1 RIKEN cDNA 1700055D16 gene ncRNA 105242982 Gm39042 - - 7|7 predicted gene, 39042 ncRNA 231801 Mm.260869 NM_145566 ENSMUSG00000029722 Agfg2 A630095P14Rik|Hrbl|RAB-R|RABR - 5|5 G2 ArfGAP with FG repeats 2 protein-coding 67801 Mm.279977 NM_026385 ENSMUSG00000031775 Pllp 0610010I06Rik|AV001002|Plapi|Tm4sf11 - 8|8 C5 plasma membrane proteolipid protein-coding 66899 Mm.272468 NM_024183 ENSMUSG00000029227 Fip1l1 1300019H17Rik|Rje - 5|5 C3.3 FIP1 like 1 (S. cerevisiae) protein-coding 319653 Mm.146262 NM_178766 ENSMUSG00000054099 Slc25a40 B230315F11Rik - 5|5 A1 solute carrier family 25, member 40 protein-coding 105247015 XR_880729 Gm42198 - - 3 A3|3 predicted gene, 42198 ncRNA 108167816 XR_001779790 Gm46229 - - 10 B5.1|10 predicted gene, 46229 ncRNA 11433 Mm.46354 NM_007388 ENSMUSG00000001348 Acp5 TRACP|TRAP - 9 A3|9 8.38 cM acid phosphatase 5, tartrate resistant protein-coding 110505 Tcra-V1.1 - - - T cell receptor alpha, variable 1.1 other 320247 Mm.447372 NR_033502 C030023E24Rik - - X|X A6 RIKEN cDNA C030023E24 gene ncRNA 102639203 XR_377595 Gm35565 - - 6 B2.3|6 predicted gene, 35565 ncRNA 69543 Mm.440514 NM_027112 ENSMUSG00000078144 Capns2 2310005G05Rik|30K-2 - 8|8 C5 calpain, small subunit 2 protein-coding 100040500 XM_017317770 Gm2808 - - 17 A1|17 predicted gene 2808 protein-coding 100462662 Gm14226 - - - predicted gene 14226 protein-coding 66618 Mm.182650 NM_025665 ENSMUSG00000001158 Snrnp27 2610209M04Rik|AI449063|AU022368|Ry1 - 6|6 D1 small nuclear ribonucleoprotein 27 (U4/U6.U5) protein-coding 545739 NM_001281525 ENSMUSG00000067700 Gm5862 EG545739 - 5|5 B1 predicted gene 5862 protein-coding 110476 Tcra-V5.6 - - - T cell receptor alpha, variable 5.6 other 104300 Prt3 Prt-3 - - pancreatic proteinase 3 protein-coding 109935 Dmp2 2PP - - dentin matrix protein 2 protein-coding 50766 Mm.311912 NM_015800 ENSMUSG00000024074 Crim1 AU015004 - 17|17 E2 cysteine rich transmembrane BMP regulator 1 (chordin like) protein-coding 108167996 XR_001780595 Gm46346 - - 12 A2|12 predicted gene, 46346 ncRNA 105243688 XR_878118 Gm39518 - - X A6|X predicted gene, 39518 ncRNA 640627 Mm.55711 NM_001357999 ENSMUSG00000044227 Gm9789 - - 16 C3.3|16 predicted gene 9789 protein-coding 102638087 XM_006523129 Gm34733 - - 16 C3.3|16 predicted gene, 34733 protein-coding 100042771 Obox4-ps33 Gm4023 - 7 A2|7 oocyte specific homeobox 4, pseudogene 33 pseudo 105243874 XR_872259 Gm28401 - - 11 A3.1|11 predicted gene 28401 ncRNA 258546 Mm.377562 NM_146553 ENSMUSG00000071065 Olfr806 MOR110-12|MOR110-5 - 10|10 D3 olfactory receptor 806 protein-coding 102638005 XR_389187 Gm11734 - - 11 E2|11 82.96 cM predicted gene 11734 ncRNA 110621 H2-T11-ps H-2T11|H2-T11|T10c|T11 - - histocompatibility 2, T region locus 11, pseudogene pseudo 102638147 Gm34781 - - 3|3 predicted gene, 34781 protein-coding 105245888 Gm41270 - - 15|15 predicted gene, 41270 ncRNA 240549 Mm.302458 NM_001013762 ENSMUSG00000071633 Gm4952 EG240549 - 19 A|19 predicted gene 4952 protein-coding 319737 Mm.303351 D130051D11Rik - - 15|15 E2 RIKEN cDNA D130051D11 gene protein-coding 108398 Srev11 Srev-11 - - SWR/J-RF/J ecotropic provirus 11 other 100416078 Gm17909 - - 7|7 C Y box protein 1 pseudogene pseudo 492844 Nctm1 - - 3 42.04 cM Nakano cataract modifier 1 unknown 406221 Mm.422372 NM_001039666 ENSMUSG00000059169 Krt40 CK-40|K40 - 11 D|11 keratin 40 protein-coding 69816 Mm.27252 NM_027222 ENSMUSG00000024353 Mzb1 2010001M09Rik|AV064572|PACAP|pERp1 - 18|18 B2 marginal zone B and B1 cell-specific protein 1 protein-coding 108167359 XR_001785400 Gm45959 - - 6 G2|6 predicted gene, 45959 ncRNA 61612 D9Mit230 - - 9 28.4 cM DNA segment, Chr 9, Massachusetts Institute of Technology 230 unknown 61794 D2Mit420 - - - DNA segment, Chr 2, Massachusetts Institute of Technology 420 unknown 102633948 XR_386197 Gm31647 - - 18 B3|18 predicted gene, 31647 ncRNA 100038513 Mm.370388 XM_017319405 Gm14149 - - 2 G3|2 predicted gene 14149 protein-coding 385383 Xlr5d-ps EG385383|Xlr5d - X|X A7.3 X-linked lymphocyte-regulated 5D, pseudogene pseudo 399575 D930021H04Rik - - - RIKEN cDNA D930021H04 gene protein-coding 105243561 XR_871330 Gm39450 - - 9 F3|9 predicted gene, 39450 ncRNA 110171 Tsri - - - T cell subset ratio influence protein-coding 408083 Psl4 - - 19|19 promotion susceptibility QTL 4 unknown 244229 Gm4974 EG244229 - 7|7 F4 ribosomal protein S2 pseudogene pseudo 108168277 Gm46544 - - 16 B1|16 60S ribosomal protein L17 pseudogene pseudo 14131 Mm.22119 NM_010188 ENSMUSG00000059498 Fcgr3 CD16 - 1 H3|1 78.8 cM Fc receptor, IgG, low affinity III protein-coding 667106 Gm13620 - - 2|2 C1.1 predicted gene 13620 protein-coding 77619 Mm.30649 NM_029942 ENSMUSG00000056671 Prelid2 1700003A01Rik|C330008K14Rik - 18|18 B3 PRELI domain containing 2 protein-coding 76651 Mm.76918 NM_029689 ENSMUSG00000094928 1700122O11Rik - - 17|17 C RIKEN cDNA 1700122O11 gene protein-coding 100043921 XM_006536377 LOC100043921 - - - C-C motif chemokine 19-like protein-coding 62431 D12Mit241 - - 12 6.84 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 241 unknown 23831 Mm.489647 NM_011797 ENSMUSG00000038526 Car14 AW536446|CA-XIV|Ca14 - 3|3 F2.1 carbonic anhydrase 14 protein-coding 69694 Mm.383230 NM_175151 ENSMUSG00000050891 Tatdn1 2310079P03Rik|CDA11 - 15|15 D1 TatD DNase domain containing 1 protein-coding 108168645 XR_001782923 LOC108168645 - - Y E uncharacterized LOC108168645 ncRNA 102632730 NR_155449 Gm30726 - - 16 C3.1|16 predicted gene, 30726 ncRNA 112209 Rapop2 - - - radiation-induced apoptosis 2 unknown 114076 Axtofa1 - - - anxiety-open field activity 1 unknown 22230 Mm.237594 NM_011672 ENSMUSG00000005262 Ufd1 Ufd1l - 16 A3|16 11.65 cM ubiquitin recognition factor in ER-associated degradation 1 protein-coding 140554 Usf2-ps1 - - 7|7 B1 upstream transcription factor 2, pseudogene 1 pseudo 668385 Gm9141 EG668385 - 3 F2.1|3 TD and POZ domain containing 2 pseudogene pseudo 103425 Mm.302791 NM_134009 ENSMUSG00000020238 Ncln 3100002P13Rik|AW120537 - 10|10 C1 nicalin protein-coding 225609 Mm.296917 NM_001013754 ENSMUSG00000054589 Gm9949 EG225609 - 18 E1|18 predicted gene 9949 protein-coding 109582 Es7 Es-7 - - esterase 7 protein-coding 207596 Mm.28791 NM_172444 ENSMUSG00000032289 Thsd4 ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik - 9|9 B thrombospondin, type I, domain containing 4 protein-coding 223186 Gm4822 EG223186 - 14|14 E4 U1 small nuclear ribonucleoprotein 1C pseudogene pseudo 53881 Mm.217354 NM_017391 ENSMUSG00000089774 Slc5a3 AA623876|BF642829|Smit1 - 16|16 C4 solute carrier family 5 (inositol transporters), member 3 protein-coding 77984 B230112I24Rik - - 6|6 RIKEN cDNA B230112I24 gene protein-coding 13278 Del(14)29H Del29H - - deletion, Chr 14, Harwell 29 other 76308 Mm.182563 NM_029576 ENSMUSG00000024870 Rab1b 1110011F09Rik - 19|19 A RAB1B, member RAS oncogene family protein-coding 103850 Mm.41761 NM_134029 ENSMUSG00000032615 Nt5m 2010013E09Rik|AI846937|dNT-2 - 11|11 B1.3 5',3'-nucleotidase, mitochondrial protein-coding 102633657 XR_379089 Gm31429 - - 9 A1|9 predicted gene, 31429 ncRNA 73333 Mm.78691 NM_178386 ENSMUSG00000069041 Slc25a31 1700034J06Rik|Ant4|Sfec - 3|3 B solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 protein-coding 102635549 XR_387694 Gm32853 - - 5 F|5 predicted gene, 32853 ncRNA 11936 Mm.22742 NM_007503 ENSMUSG00000059412 Fxyd2 Atp1g1 - 9|9 A5.2 FXYD domain-containing ion transport regulator 2 protein-coding 105243424 XR_870817 Gm39350 - - 9 B|9 predicted gene, 39350 ncRNA 317758 Mm.116971 NM_174960 ENSMUSG00000051124 Gimap9 A630002K24|BB145400 - 6|6 B2.3 GTPase, IMAP family member 9 protein-coding 78391 2610524J22Rik - - - RIKEN cDNA 2610524J22 gene protein-coding 544878 Gm5787 - - 8|8 A4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102465883 NR_106165 ENSMUSG00000099069 Mir8090 Gm27862|mmu-mir-8090 - 19|19 D1 microRNA 8090 ncRNA 629863 Ighv1-14 Gm16857 - 12|12 F2 immunoglobulin heavy variable 1-14 other 100416415 Gm18104 - - 19|19 C3 ribosomal protein S2 pseudogene pseudo 100526496 NR_037268 ENSMUSG00000105783 Mir669a-12 mmu-mir-669a-12 - 2 A1|2 8.22 cM microRNA 669a-12 ncRNA 108168414 XR_001782674 Gm46653 - - 19 D2|19 predicted gene, 46653 ncRNA 100041137 Gm15930 - - 7 A1|7 predicted gene 15930 pseudo 102634475 XR_389452 ENSMUSG00000106438 Gm32051 Gm42749 - 5 E5|5 predicted gene, 32051 ncRNA 108169179 LOC108169179 - - 6 G3 60S ribosomal protein L27 pseudogene pseudo 230576 Mm.41945 NM_177667 ENSMUSG00000034919 Ttc22 4732467L16Rik - 4|4 C7 tetratricopeptide repeat domain 22 protein-coding 171170 Mm.295324 NM_134163 ENSMUSG00000036109 Mbnl3 A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL - X|X A5 muscleblind like splicing factor 3 protein-coding 110740338 Hs-e1 - - 7 E2 beta-globin HS-E1 embryonic enhancer biological-region 100502664 Gm19309 - - 12|12 22.11 cM cytochrome c oxidase subunit 7C, mitochondrial-like pseudo 61640 D8Mit231 - - 8 30.79 cM DNA segment, Chr 8, Massachusetts Institute of Technology 231 unknown 52173 D9Ertd133e - - 9 43.36 cM DNA segment, Chr 9, ERATO Doi 133, expressed unknown 102638219 Gm34832 - - 4|4 predicted gene, 34832 ncRNA 102634286 XR_386200 Gm31907 - - 18 B3|18 predicted gene, 31907 ncRNA 102465612 NR_105979 ENSMUSG00000099199 Mir7012 Gm27370|mmu-mir-7012 - 3|3 F1 microRNA 7012 ncRNA 105242660 Gm38813 - - 6|6 predicted gene, 38813 ncRNA 108168390 XR_001782489 Gm46632 - - 18 E1|18 predicted gene, 46632 ncRNA 62354 D1Mit458 - - 1 84.93 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 458 unknown 666001 Rpl15-ps2 EG666001|Gm7885 - 9|9 D ribosomal protein L15, pseudogene 2 pseudo 269846 Trbv31 Gm16809|Tcrb-V14 - 6 19.71 cM|6 B1 T cell receptor beta, variable 31 other 102635542 XR_391536 Gm20670 - - 7 C|7 34.6 cM predicted gene 20670 ncRNA 102635264 XR_388667 Gm32649 - - 11 B1.3|11 predicted gene, 32649 ncRNA 61122 D3Mit348 - - 3 56.07 cM DNA Segment, Chr 3 Massachusetts Institute of Technology 348 unknown 60871 D6Mit71 - - 6 32.4 cM DNA segment, Chr 6, Massachusetts Institute of Technology 71 unknown 442804 Mm.335053 NM_001002772 Kirrel3os A130066N16Rik - 9|9 A4 kirre like nephrin family adhesion molecule 3, opposite strand unknown 103752557 B130002B16Rik - - - Riken cDNA B130002B16 gene protein-coding 102635621 XR_382495 Gm32910 - - 13 B1|13 predicted gene, 32910 ncRNA 102465902 NR_106195 ENSMUSG00000099324 Mir8115 Gm28012|mmu-mir-8115 - 5|5 F microRNA 8115 ncRNA 492834 Bmd5 - - 1 37.02 cM bone mineral density 5 unknown 69415 1700025N21Rik - - 10|10 RIKEN cDNA 1700025N21 gene protein-coding 27007 Mm.8217 NM_033078 ENSMUSG00000030149 Klrk1 D6H12S2489E|NKG2-D|Nkg2d - 6 F3|6 63.44 cM killer cell lectin-like receptor subfamily K, member 1 protein-coding 100036751 Fbtq4 - - - femoral bone trait QTL 4 unknown 102640067 LOC102640067 - - 3 B 28S ribosomal protein S33, mitochondrial pseudogene pseudo 62477 D10Mit100 - - 10 63.51 cM DNA segment, Chr 10, Massachusetts Institute of Technology 100 unknown 101719 AL024128 - - - expressed sequence AL024128 unknown 105246749 XR_878664 Gm41991 - - 3 A1|3 predicted gene, 41991 ncRNA 233016 Mm.24021 NM_144923 ENSMUSG00000040466 Blvrb - - 7|7 A3 biliverdin reductase B (flavin reductase (NADPH)) protein-coding 100043684 Mm.275426 NM_001160150 ENSMUSG00000096770 Amy2a4 mAmy2-3 - 3 F3|3 amylase 2a4 protein-coding 100416971 Gm18342 - - 1|1 C5 Sp140 nuclear body protein pseudogene pseudo 102634102 XR_380623 Gm31764 - - 10 C1|10 predicted gene, 31764 ncRNA 109334 Mm.470046 XR_001783923 B230398E01Rik 6720476P12Rik - 3|3 F2.1 RIKEN cDNA B230398E01 gene unknown 112304 Pas5a Par1 - 11 62.4 cM pulmonary adenoma susceptibility 5a unknown 554292 Mm.268451 NM_001024672 ENSMUSG00000093789 Methig1 Mettl7a2-Higd1c|Mettl7a2Higd1c|Mettl7a2higd1c|UbiE-YGHL1 - 15|15 F1 methyltransferase hypoxia inducible domain containing 1 protein-coding 218103 Mm.24030 NM_144836 ENSMUSG00000036110 Slc17a2 C730032N17Rik|NPT3 - 13|13 A3.1 solute carrier family 17 (sodium phosphate), member 2 protein-coding 100049612 Vms3 - - 4 37.89 cM viral myocarditis susceptibility locus 3 unknown 102632162 Gm30309 - - 8|8 predicted gene, 30309 pseudo 102635539 XR_375695 Gm32847 - - 3 D|3 predicted gene, 32847 ncRNA 108168053 XR_001780838 ENSMUSG00000114491 Gm46393 - - 13 A3.3|13 predicted gene, 46393 ncRNA 102238526 LOC102238526 - - 18 D3 polymerase (RNA) II (DNA directed) polypeptide K pseudogene pseudo 194738 Mm.233621 NM_198598 ENSMUSG00000051038 Rhox11 BC049711|Gm39 - X|X A3.3 reproductive homeobox 11 protein-coding 62719 D18Mit124 - - 18 32.15 cM DNA segment, Chr 18, Massachusetts Institute of Technology 124 unknown 107768 Birc5l TIAP2 - - baculoviral IAP repeat-containing 5-like protein-coding 116873 Mm.265985 NM_054083 ENSMUSG00000039156 Stim2 - - 5 C1|5 29.69 cM stromal interaction molecule 2 protein-coding 93931 D16Jhu70 497N4.T7 - - DNA segment, Chr 16, Johns Hopkins University 70 unknown 62926 D10Mit263 - - 10 44.02 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 263 unknown 105245085 XR_873063 Gm40584 - - 12 F1|12 predicted gene, 40584 ncRNA 636766 Gm7190 EG636766 - X A4|X fumarate hydratase pseudogene pseudo 723897 NR_029804 ENSMUSG00000065465 Mir33 Mirn33|mir-33|mmu-mir-33 - 15|15 E1 microRNA 33 ncRNA 100286840 Gm17806 - - 3|3 A1 stromal cell derived factor 2 pseudogene pseudo 102636253 XR_385026 Gm33372 - - 16 C3.3|16 predicted gene, 33372 ncRNA 414072 Mm.483602 NR_033221 BC031361 - - 16 B3|16 cDNA sequence BC031361 ncRNA 110587 Tcra-V10.4 - - - T cell receptor alpha, variable 10.4 other 52527 D6Mm4e - - - DNA segment, Chr 6, Miriam Meisler 4, expressed unknown 80297 Mm.459123 NM_032610 ENSMUSG00000011751 Sptbn4 1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv - 7 A3|7 15.88 cM spectrin beta, non-erythrocytic 4 protein-coding 100036136 Skts13 - - - skin tumor sucseptibility 13 unknown 223267 Mm.379358 NM_145466 ENSMUSG00000041625 Ggact A2ld1 - 14|14 E5 gamma-glutamylamine cyclotransferase protein-coding 100416214 Gm17971 - - 1|1 C1.2 ribosomal protein S2 pseudogene pseudo 18701 Mm.219685 NM_008838 ENSMUSG00000024145 Pigf - - 17 E4|17 56.9 cM phosphatidylinositol glycan anchor biosynthesis, class F protein-coding 73622 Mm.398317 XR_877098 1700116H05Rik - - 17|17 E4 RIKEN cDNA 1700116H05 gene ncRNA 75409 Mm.235097 NM_029273 ENSMUSG00000033214 Slitrk5 2610019D03Rik - 14|14 E4 SLIT and NTRK-like family, member 5 protein-coding 100526524 NR_037269 ENSMUSG00000077991 Mir466n mmu-mir-466n - 2 A1|2 8.22 cM microRNA 466n ncRNA 232223 Mm.229332 NM_153162 ENSMUSG00000000811 Txnrd3 AI196535|TGR|TR2 - 6|6 D1 thioredoxin reductase 3 protein-coding 244646 Mm.436810 NM_181544 ENSMUSG00000048827 Pkd1l3 - - 8|8 D3 polycystic kidney disease 1 like 3 protein-coding 100036417 Fembrs4 - - 17 17.25 cM femur breaking strength 4 unknown 100040902 Mm.235745 XR_389426 Gm3032 - - 5 E4|5 predicted gene 3032 ncRNA 259075 Mm.377825 NM_147072 ENSMUSG00000073932 Olfr641 MOR13-3 - 7|7 E3 olfactory receptor 641 protein-coding 18727 Mm.482470 NM_011091 Pira4 6M7 - 7|7 A1 paired-Ig-like receptor A4 protein-coding 60510 Mm.302793 NM_021889 ENSMUSG00000062542 Syt9 - - 7|7 E3 synaptotagmin IX protein-coding 108687 Mm.273706 NM_145537 ENSMUSG00000038312 Edem2 9530090G24Rik|AI327354 - 2|2 H1 ER degradation enhancer, mannosidase alpha-like 2 protein-coding 259110 Mm.377852 NM_147106 ENSMUSG00000060254 Olfr980 MOR223-2 - 9|9 A5.1 olfactory receptor 980 protein-coding 111943 Iap5rc16 - - - intracisternal A-type particle, U5 region, SINE repeat c-16 other 102639847 XM_006509529 LOC102639847 - - 8 B1.1 uncharacterized LOC102639847 protein-coding 28113 Mm.29346 NM_145705 ENSMUSG00000007589 Tinf2 AW552114|D14Wsu146e|Tin2 - 14 C3|14 28.19 cM Terf1 (TRF1)-interacting nuclear factor 2 protein-coding 105242670 XR_869136 Gm38822 - - 6 B3|6 predicted gene, 38822 ncRNA 102639568 Mm.131653 XR_387606 A930005G22Rik - - 5|5 F RIKEN cDNA A930005G22 gene ncRNA 105243642 XR_880348 Gm39483 - - 11 E2|11 predicted gene, 39483 ncRNA 105245312 XR_872127 Gm40787 - - 10 D2|10 predicted gene, 40787 ncRNA 212398 Mm.222723 NM_177603 ENSMUSG00000047604 Frat2 - - 19 C3|19 35.33 cM frequently rearranged in advanced T cell lymphomas 2 protein-coding 215654 Mm.300909 NM_001008420 ENSMUSG00000040452 Cdh12 Cdhb - 15 A2|15 8.25 cM cadherin 12 protein-coding 666831 Gm8314 EG666831 - 7 A3|7 myotubularin related protein 2 pseudogene pseudo 100042001 Gm14750 - - X B|X odorant binding protein I f-like pseudogene pseudo 606514 Gm6050 Ppia-ps1-1625 - 1 H2.2|1 peptidylprolyl isomerase A pseudogene 1_1625.1 pseudo 102634229 XR_389019 Gm31862 - - 11 D|11 predicted gene, 31862 ncRNA 75302 Mm.120475 NM_172421 ENSMUSG00000037486 Asxl2 4930556B16Rik|mKIAA1685 - 12|12 A1.1 additional sex combs like 2, transcriptional regulator protein-coding 104236 Aal - - - active avoidance learning unknown 62378 D13Mit134 - - 13 4.45 cM DNA segment, Chr 13, Massachusetts Institute of Technology 134 unknown 28209 D0Nrs2 Q14 - - DNA segment, National Institute of Radiological Sciences, Japan-2 unknown 223745 Gm4825 EG223745 - 15|15 E2 ribosomal protein L27 pseudogene pseudo 232854 Mm.184857 NM_146179 ENSMUSG00000034538 Zfp418 A230102I05Rik - 7|7 A1 zinc finger protein 418 protein-coding 27532 D0Mnp6 MUS235-4 - - DNA segment, Montpellier 6 unknown 112199 Wt6q2 - - - body weight, 6 weeks, QTL 2 unknown 320616 Mm.428140 NM_177209 ENSMUSG00000075596 B130006D01Rik - - 11|11 D RIKEN cDNA B130006D01 gene ncRNA 100039775 Gm2420 - - 5|5 B1 predicted gene 2420 pseudo 434016 Mm.480245 NM_001166710 ENSMUSG00000093696 Vmn1r7 EG434016|Gm5568|V1rc31 - 6|6 B3 vomeronasal 1 receptor 7 protein-coding 52830 Mm.29159 NM_026383 ENSMUSG00000028675 Pnrc2 0610011E17Rik|D4Bwg0593e - 4 D3|4 68.01 cM proline-rich nuclear receptor coactivator 2 protein-coding 103677 Mm.288460 NM_001002764 ENSMUSG00000038290 Smg6 AI317223|AU041178 - 11|11 B5 Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans) protein-coding 66242 Mm.23747 NM_025440 ENSMUSG00000049960 Mrps16 1500011E11Rik|Mprs16|S16mt - 14|14 A3 mitochondrial ribosomal protein S16 protein-coding 102642819 LOC102642819 - - - transcription elongation factor B polypeptide 1 protein-coding 102636030 Gm29467 - - Y|Y predicted gene 29467 ncRNA 100417284 Gm18502 - - 12|12 A2 crumbs homolog 1 pseudogene pseudo 234730 Mm.102591 NM_172283 ENSMUSG00000033703 Fuk 1110046B12Rik|AI303278 - 8|8 E1 fucokinase protein-coding 105245490 XR_873361 Gm40938 - - 13 A5|13 predicted gene, 40938 ncRNA 102640379 Mm.439956 XR_389090 Gm11716 - - 11 E1|11 70.26 cM predicted gene 11716 ncRNA 80903 Mm.154768 NM_030614 ENSMUSG00000031230 Fgf16 - - X|X D fibroblast growth factor 16 protein-coding 56469 Mm.431253 NM_019663 ENSMUSG00000032405 Pias1 2900068C24Rik|Ddxbp1|GBP - 9|9 B protein inhibitor of activated STAT 1 protein-coding 102639385 Mm.383464 XR_384459 Gm671 - - 15|15 F2 predicted gene 671 ncRNA 105243544 XR_871299 LOC105243544 - - 9 F3 uncharacterized LOC105243544 ncRNA 102640245 XR_384625 Gm36359 - - 16 A1|16 predicted gene, 36359 ncRNA 105243408 XR_870736 Gm39338 - - 9 A5.3|9 predicted gene, 39338 ncRNA 56619 Mm.248327 NM_019948 ENSMUSG00000030142 Clec4e C86253|Clecsf9|Mincle - 6 F2|6 58.35 cM C-type lectin domain family 4, member e protein-coding 78110 Mm.211406 NR_130991 ENSMUSG00000107073 4930428D20Rik Gm43265 - 16|16 C2 RIKEN cDNA 4930428D20 gene ncRNA 105245365 LOC105245365 - - 13 A3.1 60S ribosomal protein L39 pseudogene pseudo 102632249 Gm11466 - - 2|2 86.44 cM predicted gene 11466 ncRNA 353187 Mm.26587 NM_011584 ENSMUSG00000021775 Nr1d2 RVR|Rev-erb - 14|14 A2 nuclear receptor subfamily 1, group D, member 2 protein-coding 433374 Mm.251149 NR_040303 ENSMUSG00000104117 Gm20743 - - 1|1 H2.2 predicted gene, 20743 ncRNA 111319 Hmgn2-rs20 Hmg17-rs20 - - high mobility group nucleosomal binding domain 2, related sequence 20 pseudo 102640327 LOC102640327 - - 3 F2.3 ubiquitin-conjugating enzyme E2 variant 1 pseudogene pseudo 54601 Mm.240299 NM_018789 ENSMUSG00000042903 Foxo4 Afxh|Mllt7|afx - X D|X 43.89 cM forkhead box O4 protein-coding 102638773 Gm38511 - - 1|1 predicted gene, 38511 ncRNA 16461 jd - - - juvenile depilation unknown 278304 Mm.274734 NM_177790 ENSMUSG00000014198 Zfp385c A930006D11Rik|Znf385c - 11|11 D zinc finger protein 385C protein-coding 13298 Del(18)20H Del20H - - deletion, Chr 18, Harwell 20 other 61696 D6Mit229 - - 6 40.21 cM DNA segment, Chr 6, Massachusetts Institute of Technology 229 unknown 546164 Gm5921 EG546164 - 9|9 F3 ribosomal protein S2 pseudogene pseudo 670507 Mm.404686 NR_152178 Gm14317 - - 2|2 H3 predicted gene 14317 ncRNA 71545 Mm.488094 NR_110446 9030625G05Rik - - 18|18 E2 RIKEN cDNA 9030625G05 gene ncRNA 100861621 Gm21083 - - 5|5 predicted gene, 21083 protein-coding 110120484 LOC110120484 - - - VISTA enhancer mm1497 biological-region 12724 Mm.177761 NM_009900 ENSMUSG00000022843 Clcn2 AL118368|ClC-2|Clc2|nmf240 - 16 B1|16 12.5 cM chloride channel, voltage-sensitive 2 protein-coding 269954 Mm.276780 NM_177765 ENSMUSG00000045467 Ttll13 1700111A04Rik|4921538O11|BC024578 - 7|7 D2 tubulin tyrosine ligase-like family, member 13 protein-coding 112355 Alcp4 - - - alcohol preference locus 4, female specific unknown 14934 Mm.13123 NM_010369 ENSMUSG00000051839 Gypa AI853584|CD235a|GPA - 8 C2|8 38.27 cM glycophorin A protein-coding 104759 Mm.203915 NM_178911 ENSMUSG00000052160 Pld4 AI132321|thss - 12|12 F1 phospholipase D family, member 4 protein-coding 668139 Mm.300542 XR_001778251 Gm8995 A630026L20|EG668139 - 7|7 E3 predicted gene 8995 unknown 105243063 XR_869976 Gm39094 Gm44868 - 7 F3|7 predicted gene, 39094 ncRNA 105247011 XR_880708 Gm42195 - - 3 A3|3 predicted gene, 42195 ncRNA 100504468 Gm20241 - - 14 A1|14 4.96 cM 39S ribosomal protein L30, mitochondrial-like pseudo 246105 Aggr2 - - - aggression 2 unknown 102640590 XR_384341 Gm36618 - - 15 E3|15 predicted gene, 36618 ncRNA 61052 D8Mit257 - - 8 11.22 cM DNA segment, Chr 8, Massachusetts Institute of Technology 257 unknown 665453 Gm7639 EG665453 - 8|8 B3.2 FGFR1 oncogene partner 2 pseudogene pseudo 100417924 Gm20587 Cct7-3p - 1|1 A4 chaperonin containing Tcp1, subunit 7 (eta) pseudogene pseudo 116602 D7Tem2 - - - DNA segment, Chr 7, Tempel 2 unknown 105245212 LOC105245212 - - 10 C1 ubiquinol-cytochrome c reductase binding protein pseudogene pseudo 100036021 Ftm1 - - - total body fat tissue mass 1 unknown 105246016 Mm.473580 NM_176900 C730034F03Rik - - 15|15 E3 RIKEN cDNA C730034F03 gene ncRNA 100043167 Gm9788 - - 19|19 C3 developmental pluripotency associated 2 pseudogene pseudo 100047529 Gm17780 - - 7|7 A3 predicted gene, 17780 pseudo 12369 Mm.35687 NM_007611 ENSMUSG00000025076 Casp7 AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7 - 19 D2|19 51.84 cM caspase 7 protein-coding 19595 Rb(6.16)24Lub Rb24Lub - - Robertsonian translocation, Chr 6 and 16, Lubeck 24 other 28134 D9Mgc45e CD3 - - DNA segment, Chr 9, MRC UK Mouse Genome Centre 45 expressed unknown 258811 Mm.377701 NM_146815 ENSMUSG00000064333 Olfr926 MOR171-8 - 9|9 A5.1 olfactory receptor 926 protein-coding 20868 Mm.8235 NM_009288 ENSMUSG00000020272 Stk10 Gek1|Lok|mKIAA4026 - 11 18.97 cM|11 A4 serine/threonine kinase 10 protein-coding 192658 Mm.28764 NM_138954 ENSMUSG00000035191 Rfpl4 D7Ertd486e|Rfpl4a - 7 A1|7 2.96 cM ret finger protein-like 4 protein-coding 100037278 Mm.482159 NM_001166213 ENSMUSG00000043243 Fam129c Bcnp1 - 8|8 B3.3 family with sequence similarity 129, member C protein-coding 100217456 NR_028551 ENSMUSG00000092887 Snord53 MBII-35 - 17 E1.3|17 small nucleolar RNA, C/D box 53 snoRNA 100036406 Bmc9 - - - bone mineral content 9 unknown 50909 Mm.333375 NM_023143 ENSMUSG00000055172 C1ra AI132558|C1r|mC1rA - 6|6 F2 complement component 1, r subcomponent A protein-coding 11845 Mm.27308 NM_007481 ENSMUSG00000044147 Arf6 AI788669|AW496366 - 12|12 C2 ADP-ribosylation factor 6 protein-coding 102642880 XR_871360 Gm38642 - - 9 F4|9 predicted gene, 38642 ncRNA 111313 Hmgn2-rs12 Hmg17-rs12 - - high mobility group nucleosomal binding domain 2, related sequence 12 pseudo 258184 Olfr839-ps1 MOR152-4P - 9|9 A2 olfactory receptor 839, pseudogene 1 pseudo 53732 D15Nds2 D1Nds3 - - DNA segment, Chr 15, Nuffield Department of Surgery 2 unknown 53322 Mm.9901 NM_016773 ENSMUSG00000030659 Nucb2 AI607786|Calnuc|Nefa|Nesfatin-1 - 7|7 F1 nucleobindin 2 protein-coding 12035 Mm.4606 NM_007532 ENSMUSG00000030268 Bcat1 BCATc|Eca39 - 6 G3|6 77.27 cM branched chain aminotransferase 1, cytosolic protein-coding 102636396 XR_383467 Gm33472 - - 14 C3|14 predicted gene, 33472 ncRNA 71949 Mm.390821 NM_028015 ENSMUSG00000023021 Cers5 2310081H14Rik|AU045339|AW544927|Lass5|Trh4 - 15|15 F1 ceramide synthase 5 protein-coding 22417 Mm.20355 NM_009523 ENSMUSG00000036856 Wnt4 Wnt-4 - 4|4 D3 wingless-type MMTV integration site family, member 4 protein-coding 100503767 Mm.385044 Gm17473 - - 15|15 16.73 cM predicted gene, 17473 ncRNA 100035738 Cia18 mCia18 - - collagen induced arthritis QTL 18 unknown 30942 Mm.330897 NM_013920 ENSMUSG00000017688 Hnf4g NR2A2 - 3|3 A1 hepatocyte nuclear factor 4, gamma protein-coding 102631553 XR_380917 Gm29862 - - 10 D3|10 predicted gene, 29862 ncRNA 100861937 Gm21340 - - Y|Y predicted gene, 21340 protein-coding 60985 D18Mit8 - - 18 50.7 cM DNA segment, Chr 18, Massachusetts Institute of Technology 8 unknown 100294714 Gm15983 - - - predicted gene 15983 protein-coding 52155 D18Ggc1e - - - DNA segment, Chr 18, G. Consalez 1, expressed unknown 268396 Mm.227616 NM_177364 ENSMUSG00000040711 Sh3pxd2b G431001E03Rik|TSK4|fad49 - 11|11 A4 SH3 and PX domains 2B protein-coding 102633836 XR_391010 Gm31566 - - 4 E2|4 predicted gene, 31566 ncRNA 100093654 Trnap-agg - - - transfer RNA proline (anticodon AGG) tRNA 105244681 XR_868131 Gm40243 - - 4 D2.2|4 predicted gene, 40243 ncRNA 100859929 Krtap3 Gm11939 - 11 D keratin associated protein 3 protein-coding 109246 Mm.21814 NM_175414 ENSMUSG00000030352 Tspan9 6720474K14Rik|9430079M16Rik|AU018597|Tspan-9 - 6|6 F3 tetraspanin 9 protein-coding 665750 Gm7768 EG665750 - 13|13 B3 high mobility group box 3 pseudogene pseudo 620325 Rpl13-ps4 EG620325|Gm6143 - 3|3 F1 ribosomal protein L13, pseudogene 4 pseudo 100041056 Gm3116 - - 1|1 E1.1 contactin associated protein-like 5A pseudogene pseudo 70749 6330408M09Rik - - 16|16 RIKEN cDNA 6330408M09 gene protein-coding 15118 Mm.56986 NM_008217 ENSMUSG00000031910 Has3 - - 8 D3|8 53.28 cM hyaluronan synthase 3 protein-coding 14579 Mm.247486 NM_010276 ENSMUSG00000028214 Gem AV020497 - 4 A1|4 5.34 cM GTP binding protein (gene overexpressed in skeletal muscle) protein-coding 60713 D7Mit21 - - 7 1.91 cM DNA segment, Chr 7, Massachusetts Institute of Technology 21 unknown 13333 Del(Y)1Ct-p Del(Y)1H - - deletion, Chr Y, 1 Cattanach, proximal breakpoint other 29805 Mm.2310 NM_013859 ENSMUSG00000075227 Znhit2 C11orf5|Fon|ORF6|Znhit2-ps - 19|19 A zinc finger, HIT domain containing 2 protein-coding 100036106 Cmn1 - - - cardiac modifier of nmd 1 unknown 258121 Mm.377353 NM_001011841 ENSMUSG00000062199 Olfr1465 MOR202-28 - 19|19 A olfactory receptor 1465 protein-coding 667423 Mm.383716 NR_136918 ENSMUSG00000083705 Gm8624 EG667423|EyeLinc11 - 11 E2|11 ribosomal protein S23 pseudogene pseudo 100217430 NR_028530 Snord66 MBII-142|snoRNA142 - 16 B1|16 small nucleolar RNA, C/D box 66 snoRNA 111968 Mltr9 - - - modified polytropic long terminal repeat containing proviral locus 9 other 102634308 Gm31923 - - 7|7 predicted gene, 31923 pseudo 108168926 XR_001784227 Gm46842 - - 4 A1|4 predicted gene, 46842 ncRNA 78514 Mm.165974 NM_030113 ENSMUSG00000037148 Arhgap10 A930033B01Rik|PSGAP-m|PSGAP-s - 8|8 C1 Rho GTPase activating protein 10 protein-coding 100862311 Gm21634 - - Y|Y predicted gene, 21634 protein-coding 668784 Gm9358 EG668784 - 7 F4|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 320720 Mm.289566 NM_177244 ENSMUSG00000027086 Fastkd1 5330408N05Rik|mKIAA1800 - 2|2 C2 FAST kinase domains 1 protein-coding 100041187 Mm.482068 NM_001190381 ENSMUSG00000073953 Olfr596 Gm15117|Olfr596-ps1 - 7|7 E3 olfactory receptor 596 protein-coding 735279 NR_030524 ENSMUSG00000070075 Mir490 Mirn490|mir-490|mmu-mir-490 - 6 B1|6 microRNA 490 ncRNA 22368 Mm.288064 NM_011706 ENSMUSG00000018507 Trpv2 GRC|OTRPC2|VRL-1|Vrl1 - 11|11 B2 transient receptor potential cation channel, subfamily V, member 2 protein-coding 102641173 LOC102641173 - - 1 G1 40S ribosomal protein S8 pseudogene pseudo 666470 Gm12099 - - 11|11 A4 ribosomal protein L7-like 1 pseudogene pseudo 102639826 XR_381723 Gm36048 - - 12 C3|12 predicted gene, 36048 ncRNA 108169092 Gm42580 - - 5 A1|5 40S ribosomal protein SA pseudogene pseudo 74714 Mm.399250 4930511J24Rik - - 12|12 F1 RIKEN cDNA 4930511J24 gene protein-coding 110487 Tcra-V4.4 - - - T cell receptor alpha, variable 4.4 other 104383 Mm.283859 NM_054048 ENSMUSG00000024968 Rcor2 1A13|AW122124|CoREST|Rcor|Rcor1 - 19|19 A REST corepressor 2 protein-coding 101400 AW742418 - - - expressed sequence AW742418 unknown 14271 Fnld - - - faint-lined unknown 399601 D830039D19Rik - - - RIKEN cDNA D830039D19 gene protein-coding 112039 Bw15 - - - body weight QTL 15 unknown 102639656 Gm35915 - - 9|9 predicted gene, 35915 protein-coding 258383 Mm.425365 NM_146385 ENSMUSG00000034583 Olfr1347 MOR103-11 - 7|7 A1 olfactory receptor 1347 protein-coding 75015 Mm.250432 NM_029144 ENSMUSG00000048652 4930503B20Rik 1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13 - 3|3 H2 RIKEN cDNA 4930503B20 gene protein-coding 77048 Mm.296971 NM_029852 ENSMUSG00000020024 Cep83 2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41 - 10|10 C2 centrosomal protein 83 protein-coding 21937 Mm.1258 NM_011609 ENSMUSG00000030341 Tnfrsf1a CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R - 6 F3|6 59.32 cM tumor necrosis factor receptor superfamily, member 1a protein-coding 19049 Mm.45372 NM_144828 ENSMUSG00000061718 Ppp1r1b AU040756|DARPP-32|Darpp32 - 11|11 D protein phosphatase 1, regulatory (inhibitor) subunit 1B protein-coding 319832 Mm.127446 NM_177013 ENSMUSG00000048022 Tmem229a 6332401O19Rik - 6|6 A3.1 transmembrane protein 229A protein-coding 100041913 Gm20891 - - Y|Y predicted gene, 20891 protein-coding 102636577 XR_376147 Gm33604 - - 3 H1|3 predicted gene, 33604 ncRNA 63833 D15Mit15 - - 15 58.06 cM DNA segment, Chr 15, Massachusetts Institute of Technology 15 unknown 105245199 XR_871809 Gm40685 - - 10 B5.3|10 predicted gene, 40685 ncRNA 73008 2900073C16Rik - - 4|4 RIKEN cDNA 2900073C16 gene protein-coding 114912 Cosz3 Scis3 - 15 53.01 cM cocaine seizure 3 unknown 108167603 XM_017313134 Gm46080 - - 1 E2.3|1 predicted gene, 46080 protein-coding 101056032 XR_867295 Gm9831 - - 3|3 C predicted gene 9831 protein-coding 72729 Mm.29476 NM_178626 ENSMUSG00000052298 Cdc42se2 2810404F18Rik|AA408783|AA536669|SPEC2 - 11|11 B1.3 CDC42 small effector 2 protein-coding 15131 Hbb-bh0 Gm16324|beta-HO - 7|7 54.85 cM hemoglobin, beta, pseudogene bh0 pseudo 620126 Igkv8-34 - - 6|6 C1 immunoglobulin kappa variable 8-34 other 66773 Mm.368256 NM_182957 ENSMUSG00000091897 Gm17019 - - 5|5 A2 predicted gene 17019 protein-coding 232201 Mm.119564 NM_175476 ENSMUSG00000030047 Arhgap25 A130039I20Rik - 6|6 D1 Rho GTPase activating protein 25 protein-coding 100038646 Gm10576 - - - predicted gene 10576 protein-coding 102633424 Mm.462727 Gm31255 - - 5|5 predicted gene, 31255 protein-coding 73515 Mm.437440 NR_045928 ENSMUSG00000085265 Nell1os 1700081H22Rik - 7|7 B4 NEL-like 1, opposite strand ncRNA 100417606 Gm18711 - - 14|14 C2 solute carrier family 45, member 4 pseudogene pseudo 107691 Tcrg-V1.2 - - - T cell receptor gamma, variable 1.2 other 232664 Mm.251303 NM_145574 ENSMUSG00000029769 Ccdc136 4921511K06Rik|BC006583 - 6|6 A3.3 coiled-coil domain containing 136 protein-coding 27519 B308D2T - - - DNA segment, B308D2T unknown 100036741 Fbtq2 - - - femoral bone trait QTL 2 unknown 100041787 Mm.437206 NM_001177487 ENSMUSG00000074441 Gm15292 - - 8 A2|8 predicted gene 15292 protein-coding 102634750 XR_386819 Gm32257 - - 19 D2|19 predicted gene, 32257 ncRNA 108167756 XR_001779642 Gm46179 - - 10 D2|10 predicted gene, 46179 ncRNA 74078 Mm.381586 4933412L11Rik - - 6|6 RIKEN cDNA 4933412L11 gene protein-coding 21250 T(7;12)19Ad T19Ad - - reciprocal translocation, Chr 7 and 12, Adler 19 other 76059 5830442K09Rik - - - RIKEN cDNA 5830442K09 gene protein-coding 62094 D11Mit22 - - - DNA segment, Chr 11, Massachusetts Institute of Technology 22 unknown 71357 Mm.389719 XR_868755 5430435K18Rik Gm42904 - 5|5 G3 RIKEN cDNA 5430435K18 gene ncRNA 107453 Rasl2-6 - - - RAS-like, family 2, locus 6 protein-coding 277562 Mm.377872 NM_207254 ENSMUSG00000096703 Olfr1286 GA_x5J8B7TU5VU-1563-1372|GA_x6K02T2Q125-72472405-72471488|MOR248-21 - 2|2 E3 olfactory receptor 1286 protein-coding 434858 Mm.391346 NR_002883 Gm5643 EG434858 - X F2|X heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 224903 Mm.255066 NM_001163300 ENSMUSG00000071054 Safb 3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1 - 17|17 D scaffold attachment factor B protein-coding 666571 Gm8170 EG666571 - 10|10 C1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102635181 XM_017321201 Gm32584 - - 5 B3|5 predicted gene, 32584 protein-coding 27819 391O16R - - - DNA segment, 391O16R (Research Genetics) unknown 105246567 Gm41840 - - 19|19 predicted gene, 41840 ncRNA 104140 H55 H(lt) - - histocompatibility 55 protein-coding 621203 Gm6205 - - 5 E3|5 predicted gene 6205 pseudo 209776 Mm.300632 NM_001024138 ENSMUSG00000066197 Gpr139 GPRg1|Gm495|PGR3 - 7|7 F2 G protein-coupled receptor 139 protein-coding 246133 Mm.156736 NM_134110 ENSMUSG00000039672 Kcne2 2200002I16Rik|AW048273|MiRP1 - 16|16 C4 potassium voltage-gated channel, Isk-related subfamily, gene 2 protein-coding 433031 Mm.377953 NM_001005524 ENSMUSG00000063020 Olfr194 MOR182-13|MOR182-7P - 16|16 C1.3 olfactory receptor 194 protein-coding 108273 Eif4a-ps7 - - - eukaryotic translation initiation factor 4A, pseudogene 7 pseudo 16864 lgr - - - London grey unknown 75727 4933415A04Rik - - 11|11 B1.1 RIKEN cDNA 4933415A04 gene ncRNA 75775 Mm.50374 NM_001270700 ENSMUSG00000045797 4930402K13Rik - - X|X A1.1 RIKEN cDNA 4930402K13 gene protein-coding 100125247 Trbd2 Gm16803|Tcrb-D2 - 6 19.7 cM|6 B1 T cell receptor beta, D region 2 other 320497 Mm.487574 A630065K11Rik - - 15|15 RIKEN cDNA A630065K11 gene protein-coding 60838 D5Mit10 - - 5 50.64 cM DNA segment, Chr 5, Massachusetts Institute of Technology 10 unknown 258524 Mm.271437 NM_146531 ENSMUSG00000061342 Olfr1168 MOR174-13 - 2|2 D olfactory receptor 1168 protein-coding 100416004 Gm17864 - - X|X A3.1 predicted gene, 17864 pseudo 102467590 n-TPtgg6 n-Tp16 - 17 A3.3|17 nuclear encoded tRNA proline 6 (anticodon TGG) tRNA 52576 D13Ertd376e - - 13 29.8 cM DNA segment, Chr 13, ERATO Doi 376, expressed unknown 78179 4930520K02Rik - - 10|10 RIKEN cDNA 4930520K02 gene ncRNA 102631588 XR_386772 Gm16068 - - 19 D1|19 39.89 cM predicted gene 16068 ncRNA 100041633 Gm3443 - - 19 B|19 predicted gene 3443 protein-coding 62063 D10Mit33 - - 10 63.51 cM DNA segment, Chr 10, Massachusetts Institute of Technology 33 unknown 100526464 NR_037214 ENSMUSG00000093142 Mir3106 mir-3106|mmu-mir-3106 - 8 A1.2|8 8.38 cM microRNA 3106 ncRNA 17993 Mm.253142 NM_010887 ENSMUSG00000021764 Ndufs4 6720411N02Rik|C1-18k - 13|13 D2.2 NADH dehydrogenase (ubiquinone) Fe-S protein 4 protein-coding 224876 XM_011246773 Mark1-ps1 Gm324 - 17|17 C MAP/microtubule affinity regulating kinase 1, pseudogene 1 protein-coding 68742 Mm.248646 NM_026827 ENSMUSG00000060538 Tmem219 1110032O16Rik|2900045G02Rik|IGFBP-3R - 7|7 F3 transmembrane protein 219 protein-coding 245536 Mm.212463 NM_001033362 ENSMUSG00000090141 Gm614 - - X|X D predicted gene 614 protein-coding 100526507 NR_037287 ENSMUSG00000092850 Mir344g mir-344g|mmu-mir-344g - 7 C|7 34.31 cM microRNA 344g ncRNA 69802 Mm.151940 NM_199008 ENSMUSG00000020544 Cox11 2010004I09Rik - 11|11 D cytochrome c oxidase assembly protein 11 protein-coding 213027 Mm.437106 NM_153536 ENSMUSG00000011832 Evi5l 1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik - 8|8 A1.1 ecotropic viral integration site 5 like protein-coding 232493 Mm.275975 NM_145572 ENSMUSG00000030244 Gys2 BC021322|LGS - 6|6 G2 glycogen synthase 2 protein-coding 112319 Mwq3 - - - molecular weight of quadriceps QTL 3 unknown 102635445 Gm32781 - - 13|13 predicted gene, 32781 ncRNA 258793 Mm.377694 NM_146797 ENSMUSG00000056858 Olfr1502 MOR211-1 - 19|19 A olfactory receptor 1502 protein-coding 110223 Igh-Ars - - - immunoglobulin heavy chain Ars other 217127 Mm.90213 NM_177619 ENSMUSG00000038909 Kat7 Hbo1|Hboa|Myst2 - 11|11 D K(lysine) acetyltransferase 7 protein-coding 105243870 Gm28340 - - 1|1 predicted gene 28340 ncRNA 13235 Mm.425522 Defa16 Defcr16 - 8|8 defensin, alpha, 16 protein-coding 66799 Mm.122430 NM_025773 ENSMUSG00000025939 Ube2w 6130401J04Rik - 1|1 A3 ubiquitin-conjugating enzyme E2W (putative) protein-coding 102636171 Gm28253 - - Y|Y predicted gene 28253 ncRNA 668430 Gm9166 EG668430 - X|X D ribosomal protein S2 pseudogene pseudo 20473 Mm.370208 NM_011381 ENSMUSG00000038805 Six3 E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta - 17 E4|17 55.42 cM sine oculis-related homeobox 3 protein-coding 14882 Gtayu5 - - - gene trap AYU 5 unknown 17141 Mm.448572 NM_020018 ENSMUSG00000079349 Magea5 Mage-a5 - X F3|X 72.38 cM melanoma antigen, family A, 5 protein-coding 104326 Mdmg1 Mdmg-1 - - mandibular morphogenesis 1 protein-coding 100124451 NR_030577 ENSMUSG00000077042 Mir574 Mirn574|mir-574|mmu-mir-574 - 5 C3.1|5 microRNA 574 ncRNA 102641270 XR_001784432 Gm38545 - - 4 D2.2|4 predicted gene, 38545 ncRNA 105245403 XR_872562 Gm40865 - - 12 A1.3|12 predicted gene, 40865 ncRNA 110120449 LOC110120449 - - - VISTA enhancer mm1537 biological-region 628705 Mm.479244 NM_001164289 ENSMUSG00000091144 Phf11c EG628705|Gm6907|Phf11 - 14|14 C3 PHD finger protein 11C protein-coding 100312498 Vmn1r-ps51 - - 7 A1|7 6.56 cM vomeronasal 1 receptor, pseudogene 51 pseudo 636070 Gm7172 EG636070 - 12|12 B3 tubulin, alpha 1B pseudogene pseudo 17000 Mm.3122 NM_010736 ENSMUSG00000030339 Ltbr AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3 - 6 F3|6 59.32 cM lymphotoxin B receptor protein-coding 16233 In(10)6Rk-d In(10)6Rk|In6Rk - - inversion, Chr 10, Roderick 6, distal other 105246620 Gm41886 - - 19|19 predicted gene, 41886 pseudo 359980 DXMgc117 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 117 unknown 109789 Act2 Act-2 - - actin related gene 2 protein-coding 666417 Gm8091 EG666417 - 5|5 E4 stearoyl-CoA desaturase 5 pseudogene pseudo 61435 D5Mit247 - - 5 79.35 cM DNA segment, Chr 5, Massachusetts Institute of Technology 247 unknown 105243487 XR_880227 Gm11586 - - 11 D|11 65.48 cM predicted gene 11586 ncRNA 18148 Mm.485384 NM_008722 ENSMUSG00000057113 Npm1 B23|NO38|Npm - 11|11 A4 nucleophosmin 1 protein-coding 100628610 NR_039560 ENSMUSG00000092922 Mir5101 mmu-mir-5101|mu-mir-5101 - 12 C3|12 33.27 cM microRNA 5101 ncRNA 102640214 Gm36336 - - 2|2 predicted gene, 36336 ncRNA 66911 Mm.428698 NM_025839 ENSMUSG00000022516 Nudt16l1 1110001K21Rik|5330437I08Rik|Sdos - 16 A1|16 2.48 cM nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1 protein-coding 108168859 XR_001783794 Gm46797 - - 3 A2|3 predicted gene, 46797 ncRNA 620883 Gm12696 - - 4|4 C6 predicted gene 12696 pseudo 72326 Mm.400102 NR_040318 ENSMUSG00000073236 2500004C02Rik - - 2|2 H1 RIKEN cDNA 2500004C02 gene ncRNA 668634 Gm12340 - - 11|11 B5 ribosomal protein pseudogene pseudo 100039924 Rps13-ps2 Gm10159 - 7|7 D3 ribosomal protein S13, pseudogene 2 pseudo 100504735 Gm20379 - - 13|13 47.63 cM predicted gene, 20379 pseudo 100504689 Mm.464262 NM_001195693 ENSMUSG00000095654 Plscr5 331000 - 9|9 E3.3 phospholipid scramblase family, member 5 protein-coding 17974 Mm.389903 NM_010879 ENSMUSG00000066877 Nck2 4833426I10Rik|Grb4|NCKbeta|Nck-2 - 1|1 C1.1 non-catalytic region of tyrosine kinase adaptor protein 2 protein-coding 100502820 Mm.55827 NR_038015 ENSMUSG00000112709 Gm19395 - - 10 B3|10 27.08 cM predicted gene, 19395 ncRNA 102640330 Gm36422 - - 4|4 predicted gene, 36422 ncRNA 504186 Mm.334074 NM_001081424 ENSMUSG00000066279 Chrna10 - - 7|7 E2 cholinergic receptor, nicotinic, alpha polypeptide 10 protein-coding 73293 Mm.67659 NM_028492 ENSMUSG00000020930 Ccdc103 1700039D13Rik - 11|11 E1 coiled-coil domain containing 103 protein-coding 211323 Mm.153432 NM_178591 ENSMUSG00000062991 Nrg1 6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF - 8|8 A3 neuregulin 1 protein-coding 102638923 XR_389319 Gm35367 - - 5 E1|5 predicted gene, 35367 ncRNA 19262 Mm.224246 NM_008980 ENSMUSG00000027303 Ptpra Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha - 2 F1|2 63.23 cM protein tyrosine phosphatase, receptor type, A protein-coding 75827 Mm.156095 XR_389449 4930542N06Rik - - 5|5 E5 RIKEN cDNA 4930542N06 gene ncRNA 100271928 Mm.484123 NM_001177534 Gm15881 - - 8|8 B2 predicted gene 15881 protein-coding 227695 Mm.4449 NM_172660 ENSMUSG00000039660 Spout1 9930028P05|AL033358|CENP-32|D2Wsu81e - 2 B|2 21.29 cM SPOUT domain containing methyltransferase 1 protein-coding 67719 Mm.440480 NM_026336 ENSMUSG00000015519 2310057J18Rik 2210414P04Rik|Leg1 - 10|10 A4 RIKEN cDNA 2310057J18 gene protein-coding 238455 Mm.31376 NM_001163136 ENSMUSG00000041886 Macc1 4732474O15Rik|Gm267 - 12|12 F2 metastasis associated in colon cancer 1 protein-coding 319238 9330123L03Rik - - 1|1 C2-C3 RIKEN cDNA 9330123L03 gene ncRNA 105244463 LOC105244463 - - 3 E1 40S ribosomal protein S27-like pseudogene pseudo 23885 Mm.321452 NM_011818 ENSMUSG00000001157 Gmcl1 2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1 - 6 D1|6 37.75 cM germ cell-less, spermatogenesis associated 1 protein-coding 100041115 XM_001476310 ENSMUSG00000095503 Gm3147 - - 5 E3|5 predicted gene 3147 protein-coding 100503859 Mm.75172 NR_045272 ENSMUSG00000098659 1110015O18Rik - - 3|3 A1 RIKEN cDNA 1110015O18 gene ncRNA 402722 Mm.440461 E030016H06Rik - - 2|2 RIKEN cDNA E030016H06 gene protein-coding 493075 Lmr11 - - - leishmaniasis resistance 11 unknown 100416382 Gm18087 - - 18|18 D3 ribosomal protein S3 pseudogene pseudo 105755 AA589642 - - - expressed sequence AA589642 protein-coding 111273 Pou5f1-rs2 Otf3-rs2|Otf3b - - POU domain, class 5, transcription factor 1, related sequence 2 pseudo 15023 H2-T1 H-2T1 - - histocompatibility 2, T region locus 1 protein-coding 100417763 Gm3170 100041158|Gm17144 - 14|14 A1 esterase D/formylglutathione hydrolase pseudogene pseudo 667174 Gm8495 EG667174 - 9|9 E3.3 ubiquitin domain containing 2 pseudogene pseudo 102639716 XR_387900 ENSMUSG00000110212 Gm35963 Gm45642 - 8 C4|8 predicted gene, 35963 ncRNA 100043105 Gm4234 - - X D|X predicted pseudogene 4234 protein-coding 75062 Mm.25779 NM_029157 ENSMUSG00000028902 Sf3a3 4930512K19Rik|60kDa - 4|4 D2.2 splicing factor 3a, subunit 3 protein-coding 105244047 Gm39730 - - 1|1 predicted gene, 39730 ncRNA 72415 Mm.153202 NM_028232 ENSMUSG00000023940 Sgo1 3300001M08Rik|C81037|Sgol1 - 17|17 C shugoshin 1 protein-coding 257983 Olfr783-ps1 MOR114-10P - 10|10 D3 olfactory receptor 783, pseudogene 1 pseudo 100503011 Gm11410 - - 4|4 37.89 cM cytochrome b-like pseudo 385109 Mm.305352 Igkv4-72 Gm1499|am4 - 6|6 C1 immunoglobulin kappa chain variable 4-72 other 629826 Mm.425779 Ighv14-4 Gm16841|VH-D-J - 12|12 F1 immunoglobulin heavy variable 14-4 other 20624 Mm.873 NM_011431 ENSMUSG00000020929 Eftud2 116kDa|Snrp116|U5-116kD - 11|11 E1 elongation factor Tu GTP binding domain containing 2 protein-coding 554161 AA438147 - - - expressed sequence AA438147 protein-coding 56320 Mm.19016 NM_019813 ENSMUSG00000034675 Dbn1 - - 13 B1|13 30.06 cM drebrin 1 protein-coding 69476 Mm.67177 XR_865702 1700029M03Rik - - 1|1 H2.2 RIKEN cDNA 1700029M03 gene unknown 98366 Mm.329963 NM_028534 ENSMUSG00000026155 Smap1 1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175 - 1|1 A5 small ArfGAP 1 protein-coding 110283620 LOC110283620 - - - Spp1 5' regulatory region biological-region 73856 Mm.399156 NR_040730 4930428G15Rik - - 9|9 F3 RIKEN cDNA 4930428G15 gene ncRNA 102636872 XR_388123 Gm33823 - - 8 E1|8 predicted gene, 33823 ncRNA 100034987 Skmw10 - - - skeletal muscle weight 10 unknown 102467615 n-TYgta8 n-Ty8 - 13 A3.1|13 nuclear encoded tRNA tyrosine 8 (anticodon GTA) tRNA 62743 D17Mit218 - - 17 43.76 cM DNA segment, Chr 17, Massachusetts Institute of Technology 218 unknown 381820 Mm.291762 NM_001163445 ENSMUSG00000072704 Smim10l1 2700089E24Rik|AI662692 - 6|6 G1 small integral membrane protein 10 like 1 protein-coding 14773 Mm.279400 NM_018869 ENSMUSG00000003228 Grk5 Gprk5 - 19 D3|19 56.52 cM G protein-coupled receptor kinase 5 protein-coding 61776 D3Mit261 - - 3 72.28 cM DNA segment, Chr 3, Massachusetts Institute of Technology 261 unknown 664779 Mm.290924 NM_001039718 ENSMUSG00000024695 Gm44505 Zfp91-Cntf|Zfp91Cntf - 19 A|19 predicted readthrough transcript (NMD candidate), 44505 ncRNA 18472 Mm.397111 NM_013625 ENSMUSG00000020745 Pafah1b1 LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha - 11 B5|11 45.76 cM platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 protein-coding 98795 AA511243 - - - expressed sequence AA511243 unknown 102637489 XR_378534 Gm34283 - - 7 F3|7 predicted gene, 34283 ncRNA 268595 Mm.2388 NM_001252508 ENSMUSG00000094910 D430019H16Rik AI852661 - 12|12 E RIKEN cDNA D430019H16 gene protein-coding 140483 Mm.33120 NM_080462 ENSMUSG00000026986 Hnmt 1500031F01Rik|AI788969 - 2|2 A3 histamine N-methyltransferase protein-coding 16265 In(2)2H-d In(2)2H|In2H - - inversion, Chr 2, Harwell 2, distal other 383032 Gm5215 EG383032 - 15|15 D1 predicted gene 5215 pseudo 111747 Iapt19 - - - intracisternal A particle, tumor specific 19 other 102637480 Zar1ps - - 5 C3.2 zygote arrest 1 pseudogene pseudo 100113371 Ciaaq1 Ciaa1 - 7 31.44 cM collagen induced arthritis autoantibody QTL 1 unknown 19437 Rb(1.11)2Mpl Rb2Mpl - - Robertsonian translocation, Chr 1 and 11, Montpellier 2 other 99561 Mm.441412 AI181833 - - - expressed sequence AI181833 unknown 100417448 Gm14935 Hspd1-10p - X|X C3 heat shock protein 1 (chaperonin) pseudogene 10 pseudo 102635462 Gm32794 - - 8|8 predicted gene, 32794 ncRNA 102639401 XR_391681 Gm35727 - - X A5|X predicted gene, 35727 ncRNA 27510 B546P1T - - - DNA segment, B546P1T unknown 668145 Gm9001 EG668145 - 6|6 C2 phosphatidylinositol glycan anchor biosynthesis, class P pseudogene pseudo 102637025 XR_388942 Gm33937 - - 11 C|11 predicted gene, 33937 ncRNA 108167382 XR_001785378 Gm45969 - - 6 F3|6 predicted gene, 45969 ncRNA 68395 Mm.486287 LOC68395 - - 17|17 histocompatibility 2, Q region locus 6-like protein-coding 109232 Mm.136458 NM_178653 ENSMUSG00000038936 Sccpdh AW214504|C330023F11Rik - 1|1 H4 saccharopine dehydrogenase (putative) protein-coding 110053 Dsi1 Dsi-1 - - David Steffen integration 1 protein-coding 72039 Mm.249016 NM_023644 ENSMUSG00000027709 Mccc1 1810045E08Rik|2310058B18Rik|MCCalpha|Mcca|R75106 - 3|3 B methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) protein-coding 100416560 Gm18159 - - 6|6 G2 sorbitol dehydrogenase pseudogene pseudo 242662 Mm.192502 NM_182929 ENSMUSG00000032890 Rims3 A730060M23Rik|Nim3|Rim3|mKIAA0237 - 4|4 D2.2 regulating synaptic membrane exocytosis 3 protein-coding 404475 Olfr1091-ps1 GA_x5J8B7W3Y5M-121303-120726 - 2|2 D olfactory receptor 1091, pseudogene 1 pseudo 27995 D16Ium7e D16Ium16|D16Ium16e|D16Ium7 - - DNA segment, Chr 16, Indiana University Medical 7, expressed unknown 100416823 Gm18281 - - 18|18 E1 zinc finger protein 592 pseudogene pseudo 70007 Mm.439151 1700029J08Rik - - 12|12 RIKEN cDNA 1700029J08 gene protein-coding 75178 Mm.52592 NM_029197 ENSMUSG00000024155 Meiob 4930528F23Rik|MLZ-675 - 17|17 A3.3 meiosis specific with OB domains protein-coding 73035 2900073N21Rik - - 2|2 RIKEN cDNA 2900073N21 gene protein-coding 639025 Mm.386535 NM_001167586 ENSMUSG00000023093 Gm7257 EG639025|Pate-q|Pate12 - 9|9 A4 predicted gene 7257 protein-coding 100040597 Gm2860 - - 3|3 H3 predicted gene 2860 pseudo 101286 AU020745 - - - expressed sequence AU020745 unknown 103921 Fers Fer - - ferris unknown 112098 Bglq2 - - 2 74.83 cM body growth late QTL 2 unknown 71331 Mm.87185 5430411C19Rik - - 17|17 E1.1 RIKEN cDNA 5430411C19 gene unknown 102638366 XR_374833 Gm34948 - - 2 E2|2 predicted gene, 34948 ncRNA 105247398 Mm.417685 LOC105247398 - - - uncharacterized LOC105247398 ncRNA 216848 Mm.178246 NM_146019 ENSMUSG00000018474 Chd3 2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1 - 11|11 B3 chromodomain helicase DNA binding protein 3 protein-coding 21643 tct2 tct|tct-2 - - t complex tail interaction 2 unknown 116769 Cocrb16 - - - cocaine related behavior 16 unknown 100417200 Gm16332 - - 1|1 F predicted gene 16332 pseudo 622924 Mm.389722 NM_001243110 ENSMUSG00000096527 Gm6370 - - 5 G3|5 predicted gene 6370 protein-coding 100416680 Gm18189 - - 10|10 A4 Braf transforming gene pseudogene pseudo 12831 Mm.7281 NM_015734 ENSMUSG00000026837 Col5a1 AI413331 - 2 A3|2 19.38 cM collagen, type V, alpha 1 protein-coding 102638880 XR_388848 Gm35337 - - 11 B5|11 predicted gene, 35337 ncRNA 195576 Gm13229 - - 4|4 E1 predicted gene 13229 protein-coding 237361 Rpl27a-ps1 EG237361|Gm4923 - 10|10 B4 ribosomal protein L27A, pseudogene 1 pseudo 111484 Gsta GSTs|Gst-2 - - glutathione S-transferase cluster other 54217 Mm.11376 NM_018730 ENSMUSG00000057863 Rpl36 - - 17|17 D ribosomal protein L36 protein-coding 628551 Igkv12-67 EG628551|Gm6895|fg12 - 6|6 C1 immunoglobulin kappa chain variable 12-67 pseudo 102636698 Gm33698 - - 9|9 predicted gene, 33698 protein-coding 77506 8030497O21Rik - - - RIKEN cDNA 8030497O21 gene protein-coding 105604 AU022395 - - - expressed sequence AU022395 unknown 493016 Smdq1 - - 5 55.72 cM segregation of mitochondrial DNA QTL 1 unknown 100042792 Gm4034 - - 1 G1|1 predicted gene 4034 pseudo 665524 Tubb2a-ps1 EG665524 - 13 B3|13 tubulin, beta 2a, pseudogene 1 pseudo 442796 Mm.483541 NM_001002766 ENSMUSG00000020887 A230052G05Rik - - 8|8 B3.3 RIKEN cDNA A230052G05 gene ncRNA 71130 Mm.128597 XM_355785 ENSMUSG00000052631 Sh2d6 - - 6|6 C1 SH2 domain containing 6 protein-coding 100041813 Gm20889 - - Y|Y predicted gene, 20889 protein-coding 228792 Mm.422655 Dnmt3bos 7530422B04Rik|Gm563 - 2|2 H1 DNA methyltransferase 3B, opposite strand protein-coding 102641406 Gm38556 - - 10|10 predicted gene, 38556 ncRNA 60766 D2Mit69 - - 2 14.8 cM DNA segment, Chr 2, Massachusetts Institute of Technology 69 unknown 320315 Mm.185120 NR_045162 ENSMUSG00000097326 A330048O09Rik - - 13|13 A5 RIKEN cDNA A330048O09 gene ncRNA 666025 Gm7895 EG666025|Gm1832 - 1|1 D protein phosphatase 1B, magnesium dependent, beta isoform pseudogene pseudo 12570 Mm.153833 NM_009872 ENSMUSG00000090071 Cdk5r2 B230310J22Rik|p39 - 1|1 C4 cyclin-dependent kinase 5, regulatory subunit 2 (p39) protein-coding 101020 Mm.33085 AW985879 - - - expressed sequence AW985879 unknown 102636279 XR_001778757 Gm33391 - - 8 C3|8 predicted gene, 33391 ncRNA 97630 C76736 - - - expressed sequence C76736 unknown 242083 Mm.40577 NM_178726 ENSMUSG00000027784 Ppm1l 3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175 - 3|3 E1 protein phosphatase 1 (formerly 2C)-like protein-coding 100043702 Gm4596 - - 3 G1|3 ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) pseudogene pseudo 77524 Mm.188961 C030017B01Rik - - 18|18 RIKEN cDNA C030017B01 gene protein-coding 625328 XM_889893 H3f3c Gm14384|H3mm11 - 2|2 E5 H3 histone, family 3C protein-coding 19412 ras asr - - resistance to audiogenic seizures unknown 61529 D8Mit188 - - 8 67.66 cM DNA segment, Chr 8, Massachusetts Institute of Technology 188 unknown 75853 Mm.420737 NR_033307 4930592I03Rik - - 18|18 E3 RIKEN cDNA 4930592I03 gene ncRNA 100042758 Obox4-ps29 Gm4014 - 7|7 A2 oocyte specific homeobox 4, pseudogene 29 pseudo 675278 Rpl21-ps15 Gm15150 - X|X F3 ribosomal protein L21, pseudogene 15 pseudo 100316756 NR_035480 ENSMUSG00000088639 Mir1955 mir-1955|mmu-mir-1955 - 2 E1|2 50.81 cM microRNA 1955 ncRNA 108167770 Gm46189 - - 10 B3|10 leukocyte immunoglobulin-like receptor subfamily A member 6 pseudogene pseudo 100316688 NR_035450 ENSMUSG00000089260 Mir1929 mir-1929|mmu-mir-1929 - 10 B2|10 23.24 cM microRNA 1929 ncRNA 67610 Mm.109074 NM_026274 ENSMUSG00000050079 Rspry1 4930470D19Rik|AI608258 - 8|8 C5 ring finger and SPRY domain containing 1 protein-coding 359924 DXMgc66 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 66 unknown 320580 A930025A13Rik - - 17|17 D RIKEN cDNA A930025A13 gene unknown 11979 Mm.87854 NM_007511 ENSMUSG00000006567 Atp7b Atp7a|WND|tx - 8 A2|8 10.78 cM ATPase, Cu++ transporting, beta polypeptide protein-coding 78238 Mm.243903 NR_130998 ENSMUSG00000085217 6030471H07Rik - - 4|4 C4 RIKEN cDNA 6030471H07 gene ncRNA 105245948 XR_875335 Gm41320 - - 15 C|15 predicted gene, 41320 ncRNA 102465715 NR_106098 ENSMUSG00000099331 Mir7239 Gm27504|mmu-mir-7239 - 11|11 B1.1 microRNA 7239 ncRNA 665503 Gm7664 EG665503 - 13|13 B3 predicted gene 7664 pseudo 111970 Mm.4543 NR_002854 Dlx1as Dix1as|Dlx1os - 2 C2|2 42.58 cM distal-less homeobox 1, antisense ncRNA 102634837 XR_377521 Gm13853 - - 6 A3.3|6 14.75 cM predicted gene 13853 ncRNA 240514 Mm.329657 NM_198616 ENSMUSG00000095098 Ccdc85b AI842788|BB115872 - 19|19 A coiled-coil domain containing 85B protein-coding 628155 LOC628155 - - 2|2 H4 zinc finger protein 709-like protein-coding 100416174 Gm13495 - - 2|2 C1.1 predicted gene 13495 pseudo 101056219 Mm.394919 NR_155295 Urml mach-1 - 13|13 B3 up-regulated in Myc liver ncRNA 328949 Mm.312511 NM_001033406 ENSMUSG00000071856 Mcc D18Ertd451e|E330037C19 - 18 B3|18 23.74 cM mutated in colorectal cancers protein-coding 97358 C77645 - - - expressed sequence C77645 unknown 78737 9530053I22Rik - - 11|11 RIKEN cDNA 9530053I22 gene protein-coding 108751 2700088P18Rik - - 2|2 RIKEN cDNA 2700088P18 gene protein-coding 352945 BC005685 - - 4|4 cDNA sequence BC005685 protein-coding 100415982 Gm17853 - - 9|9 B annexin A7 pseudogene pseudo 102632884 Gm30844 - - 11|11 predicted gene, 30844 ncRNA 100534352 Gm38430 - - 7|7 A1 Ewing sarcoma breakpoint region 1 pseudogene pseudo 100035587 Xydsq - - - X/Y dissociation QTL unknown 100043024 Tnxa - - 17|17 B1 tenascin XA (pseudogene) pseudo 56758 Mm.255723 NM_020007 ENSMUSG00000027763 Mbnl1 Mbnl|mKIAA0428 - 3|3 D muscleblind like splicing factor 1 protein-coding 102640637 XR_381034 Gm36653 - - 11 A1|11 predicted gene, 36653 ncRNA 100124344 Traj44 Gm16926 - 14|14 C2 T cell receptor alpha joining 44 other 76066 5830435N17Rik - - 11|11 RIKEN cDNA 5830435N17 gene protein-coding 327857 Mm.453020 A330087I24 - - 10|10 D3 uncharacterized protein A330087I24 protein-coding 242259 Mm.239962 NM_001081263 ENSMUSG00000028360 Slc44a5 AA117069|Gm422 - 3|3 H3-H4 solute carrier family 44, member 5 protein-coding 320846 Mm.441458 NR_028423 ENSMUSG00000087694 A530058N18Rik - - 2|2 E4 RIKEN cDNA A530058N18 gene ncRNA 14857 Mm.467426 NM_008181 ENSMUSG00000074183 Gsta1 Gst2-1 - 9 E1|9 43.65 cM glutathione S-transferase, alpha 1 (Ya) protein-coding 94051 Ms10l MMS10-L - 19|19 minisatellite 10l detected by probe MMS10 other 320094 Mm.474528 B930019K04Rik - - 14|14 A3 RIKEN cDNA B930019K04 gene protein-coding 619312 Mm.427671 NR_040379 G730013B05Rik linc-Cblb|linc1610 - 16 B5|16 RIKEN cDNA G730013B05 gene ncRNA 105246923 XR_880439 Gm42118 - - 5 E3|5 predicted gene, 42118 ncRNA 319220 Mm.73723 5430427N15Rik 4930471E07Rik - 5|5 RIKEN cDNA 5430427N15 gene protein-coding 67840 Mm.319530 NM_026401 ENSMUSG00000021967 Mrpl57 2610025P17Rik|AV005697|Mrp63 - 14|14 C3 mitochondrial ribosomal protein L57 protein-coding 100039095 Mm.412326 Gm2044 - - 7 F4|7 predicted gene 2044 unknown 102634641 XR_375684 Gm32177 - - 3 C|3 predicted gene, 32177 ncRNA 56517 Mm.154284 NM_019723 ENSMUSG00000063652 Slc22a21 Octn3|Slc22a9 - 11|11 B1.3 solute carrier family 22 (organic cation transporter), member 21 protein-coding 100861748 Gm21184 - - Y|Y predicted gene, 21184 protein-coding 105243550 XR_880277 Gm39441 - - 11 E1|11 predicted gene, 39441 ncRNA 56585 236m20T7 - - - DNA segment, 236m20T7 unknown 105244357 XR_866948 1810021M19Rik - - 2|2 H3 RIKEN cDNA 1810021M19 gene ncRNA 105246368 XR_877179 Gm41666 - - 18 A1|18 predicted gene, 41666 ncRNA 16311 In(9)39Rk In39Rk - - inversion, Chr 9, Roderick 39 other 383927 Gm17743 - - 3|3 H2 nuclear receptor subfamily 5, group A, member 2 pseudogene pseudo 62956 D12Mit258 - - 12 40.9 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 258 unknown 63017 D17Mit274 - - 17 27.85 cM DNA segment, Chr 17, Massachusetts Institute of Technology 274 unknown 404317 Mm.377359 NM_207556 ENSMUSG00000073956 Olfr592 MOR0-3P|MOR32-13|Olfr1525-ps1 - 7|7 E3 olfactory receptor 592 protein-coding 60734 D1Mit24 - - 1 38.54 cM DNA segment, Chr 1, Massachusetts Institute of Technology 24 unknown 108617 Iap5rb15 - - - intracisternal A-type particle, U5 region, SINE repeat b-15 other 102637210 Gm21898 - - Y|Y predicted gene, 21898 protein-coding 102637827 XR_380012 Gm38502 - - 9 F4|9 predicted gene, 38502 ncRNA 105245116 XR_871506 Gm40610 - - 10 A3|10 predicted gene, 40610 ncRNA 100043000 Mm.396243 Rpl3-ps1 EG668219|Gm16468 - X|X A1.1 ribosomal protein L3, pseudogene 1 pseudo 75809 Mm.443272 NM_029449 4930488L21Rik 4930452J22Rik - 8|8 C5 RIKEN cDNA 4930488L21 gene ncRNA 102633201 LOC102633201 - - 4 E1 60S acidic ribosomal protein P1 pseudogene pseudo 102640971 XR_877072 CJ186046Rik Six2as - 17 E4|17 Riken cDNA CJ186046 gene ncRNA 73449 Mm.379225 NM_001033168 ENSMUSG00000073598 1700066B19Rik SMIM33 - 18|18 B2 RIKEN cDNA 1700066B19 gene protein-coding 108168620 XM_017318828 LOC108168620 - - Y E Y-linked testis-specific protein 1-like protein-coding 102636722 Gm33715 - - 8 D3|8 predicted gene, 33715 pseudo 61370 D4Mit204 - - 4 66.25 cM DNA segment, Chr 4, Massachusetts Institute of Technology 204 unknown 100134856 Gm17795 - - 10|10 B1 fragile X mental retardation gene 1, autosomal homolog pseudogene pseudo 105247279 XR_882283 Gm42406 - - X A3.3|X predicted gene, 42406 ncRNA 102465225 NR_105842 ENSMUSG00000098264 Mir6414 Gm27518|mmu-mir-6414 - 5|5 B3 microRNA 6414 ncRNA 111689 Ms15-7 - - - minisatellite 15-7 detected by probe 33.15 other 105242934 XR_882064 Gm39006 - - 7 B3|7 predicted gene, 39006 ncRNA 11690 Mm.19844 NM_009663 ENSMUSG00000060063 Alox5ap Flap - 5|5 G3 arachidonate 5-lipoxygenase activating protein protein-coding 105245449 XM_011244248 Gm40902 - - 12 D3|12 predicted gene, 40902 protein-coding 70231 Mm.271950 NM_027352 ENSMUSG00000014959 Gorasp2 0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59 - 2|2 C2 golgi reassembly stacking protein 2 protein-coding 108168010 XR_001780631 Gm46359 - - 12 C3|12 predicted gene, 46359 ncRNA 102633242 XR_375249 Gm31117 - - 2 H3|2 predicted gene, 31117 ncRNA 140492 Mm.411614 NM_080465 ENSMUSG00000054477 Kcnn2 KCa2.2|SK2|SKCA2|bc|fri - 18|18 B3-C potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 protein-coding 105332 Mm.10034 AW011956 W51672 - - expressed sequence AW011956 protein-coding 16351 Mm.1350 NM_008389 ENSMUSG00000028696 Ipp D4Jhu8|Mipp - 4 D1|4 53.2 cM IAP promoted placental gene protein-coding 212772 Mm.381231 NM_173750 ENSMUSG00000027122 Arl14ep 2700007P21Rik|4930448O08Rik|ARF7EP - 2|2 E3 ADP-ribosylation factor-like 14 effector protein protein-coding 22377 Mm.1109 NM_016757 ENSMUSG00000030035 Wbp1 AI255152 - 6|6 C3 WW domain binding protein 1 protein-coding 622657 Gm6340 EG622657 - 14|14 B predicted pseudogene 6340 protein-coding 109621 Ccua - - - curlicue a protein-coding 677321 Gm9712 - - 7 B3|7 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene pseudo 667772 Mm.301387 NM_001166210 ENSMUSG00000092009 Myh15 EG667772 - 16|16 B5 myosin, heavy chain 15 protein-coding 433619 Mm.28359 NM_028629 ENSMUSG00000059832 Kprp 1110001M24Rik|AA589586 - 3|3 F1 keratinocyte expressed, proline-rich protein-coding 67666 Mm.178759 NM_178255 ENSMUSG00000030606 Hapln3 4930554N11Rik|Lpr3 - 7|7 D2 hyaluronan and proteoglycan link protein 3 protein-coding 497105 Ear-ps7 - - 14 C1|14 eosinophil-associated, ribonuclease A family, pseudogene 7 pseudo 109823 Aldr3 Ahr-3|Ahr3 - - aldehyde reductase 3 protein-coding 56079 Mm.445312 NM_019514 ENSMUSG00000028373 Astn2 1d8|Astnl|bM452J22.1 - 4|4 C1 astrotactin 2 protein-coding 108168158 XR_001781252 Gm46452 - - 14 C1|14 predicted gene, 46452 ncRNA 110138 Ccs1 - - - colon cancer susceptibility 1 protein-coding 320634 Mm.210343 NM_177215 ENSMUSG00000001173 Ocrl 9530014D17Rik|BB143339|OCRL1 - X|X A5 OCRL, inositol polyphosphate-5-phosphatase protein-coding 19687 Mm.148877 NM_011258 ENSMUSG00000029191 Rfc1 140kDa|Alp145|RFC140|Recc1 - 5 C3.1|5 33.61 cM replication factor C (activator 1) 1 protein-coding 102632733 XR_385541 Gm30729 - - 17 B1|17 predicted gene, 30729 ncRNA 102638767 XR_373451 Gm35252 - - 1 C2|1 predicted gene, 35252 ncRNA 116981 Pbw3 - - 11 15.63 cM pentobarbital withdrawal QTL 3 unknown 100038953 Gm1980 - - 2 H4|2 predicted gene 1980 pseudo 108294 Nzv2 Nxv-2|Nxv2|Nzv-2 - - NZB virus 2 other 100035511 Chldq2 - - - cholesterol and HDL QTL 2 unknown 62451 D11Mit358 - - 11 58.83 cM DNA Segment, Chr 11 Massachusetts Institute of Technology 358 unknown 378472 Mm.482379 NR_027885 Vaultrc5 Gm22653|Mvg1 - 18 B2|18 vault RNA component 5 ncRNA 109280107 LOC109280107 Mm1321 - - VISTA enhancer mm1321 biological-region 104981 Mm.60626 AV259865 - - - expressed sequence AV259865 unknown 53118 M-06942 - - - DNA segment, M-06942 unknown 12663 Mm.440490 NM_021350 ENSMUSG00000078185 Chml AI450814|E030003F13Rik|REP-2|Rep2 - 1 H3|1 81.7 cM choroideremia-like protein-coding 75597 Mm.276040 NM_001127346 ENSMUSG00000068184 Ndufaf2 1810058I14Rik|C86051|Ndufa12l|mimitin - 13|13 D2.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2 protein-coding 26405 Mm.211762 NM_011946 ENSMUSG00000024383 Map3k2 9630061B06Rik|AI585793|Mekk2|Mekk2b - 18|18 B1 mitogen-activated protein kinase kinase kinase 2 protein-coding 109729085 Mm.210048 NM_001348727 Htd2 - - 14 A1|14 hydroxyacyl-thioester dehydratase type 2 protein-coding 102638249 XR_001782202 Gm34858 - - 17 E1.1|17 predicted gene, 34858 ncRNA 235392 Gm4895 EG235392|Ube2q2l - 10|10 A3 predicted gene 4895 pseudo 100040792 Mm.277966 NR_040286 ENSMUSG00000078640 Gm11627 - - 11|11 E1 predicted gene 11627 ncRNA 15108 Mm.6994 NM_016763 ENSMUSG00000025260 Hsd17b10 17bHSD10|Ads9|ERAB|Hadh2 - X|X F3 hydroxysteroid (17-beta) dehydrogenase 10 protein-coding 241794 Mm.425102 NM_001081134 ENSMUSG00000074575 Kcng1 AW536275 - 2|2 H3 potassium voltage-gated channel, subfamily G, member 1 protein-coding 331391 XM_285437 Gm5123 EG331391 - X|X A1.2 predicted pseudogene 5123 protein-coding 271981 Mm.257864 NM_173032 ENSMUSG00000028030 Tbck 1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl - 3|3 G3 TBC1 domain containing kinase protein-coding 20998 t btm - - t-complex unknown 102639636 XR_868401 Gm35900 - - 5 B3|5 predicted gene, 35900 ncRNA 240442 Mm.26594 NM_175028 ENSMUSG00000053950 Adnp2 8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863 - 18|18 E3 ADNP homeobox 2 protein-coding 102640127 XR_869251 Gm36268 - - 6 D1|6 predicted gene, 36268 ncRNA 100418296 Gm19124 - - 1|1 C1.1 predicted gene, 19124 pseudo 111602 Xmv13 Xmv-13 - - xenotropic murine leukemia virus 13 other 100628586 NR_039572 ENSMUSG00000092638 Mir5112 mmu-mir-5112|mu-mir-5112 - 18 E3|18 56.71 cM microRNA 5112 ncRNA 105244350 Gm39976 - - 2|2 predicted gene, 39976 ncRNA 628116 Gm6841 EG628116 - 12|12 D3 NSA2 ribosome biogenesis homolog pseudogene pseudo 20226 Mm.28688 NM_011319 ENSMUSG00000068739 Sars Sars1|Strs|serRS - 3 F3|3 47.08 cM seryl-aminoacyl-tRNA synthetase protein-coding 62671 D15Mit144 - - 15 29.44 cM DNA segment, Chr 15, Massachusetts Institute of Technology 144 unknown 27207 Mm.196538 NM_013725 ENSMUSG00000003429 Rps11 - - 7|7 B3 ribosomal protein S11 protein-coding 16043 Igh-Sa1 - - - immunoglobulin heavy chain Sa1 other 102635670 Mm.400645 XR_373419 Gm32949 - - 1 C1.2|1 predicted gene, 32949 ncRNA 53375 Mm.292613 NM_016804 ENSMUSG00000027099 Mtx2 1500012G02Rik - 2|2 C3 metaxin 2 protein-coding 258591 Mm.223117 NM_146598 ENSMUSG00000108948 Olfr695 MOR283-6 - 7|7 E3 olfactory receptor 695 protein-coding 100043115 Gm4240 - - 14|14 D2 ribosomal protein L17 pseudogene pseudo 100503010 Gm19502 - - X|X 56.22 cM lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma-like pseudo 51849 D3Ggc4e - - - DNA segment, Chr 3, G. Consalez 4, expressed unknown 319334 Mm.447533 C030017G13Rik - - 5|5 RIKEN cDNA C030017G13 gene protein-coding 100035207 Mpdk6 - - - modifier of polycystic kidney disease 6 unknown 62446 D10Mit296 - - 10 65.33 cM DNA Segment, Chr 10 Massachusetts Institute of Technology 296 unknown 104708 Mm.440693 BB217526 - - - expressed sequence BB217526 unknown 70394 Mm.41101 NM_133727 ENSMUSG00000006021 Kptn 2310042D10Rik|2E4|C030013F01Rik - 7 A2|7 8.75 cM kaptin protein-coding 100042755 Gm4012 - - 12|12 A1.2 predicted gene 4012 pseudo 229011 Mm.205422 NM_172676 ENSMUSG00000038605 Samd10 D930033N23Rik|E130318E08 - 2|2 H4 sterile alpha motif domain containing 10 protein-coding 242443 Mm.440095 NM_001033351 ENSMUSG00000039579 Grin3a 6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973 - 4|4 B1 glutamate receptor ionotropic, NMDA3A protein-coding 60956 DXMit83 - - X 27.99 cM DNA segment, Chr X, Massachusetts Institute of Technology 83 unknown 246107 Lifespan1 - - 9 48.27 cM life span 1 unknown 100042408 Mm.406339 Gm3830 - - 8 D3|8 predicted gene 3830 protein-coding 12794 Mm.299737 NM_009920 ENSMUSG00000024873 Cnih2 CNIH-2|Cnil - 19|19 A cornichon family AMPA receptor auxiliary protein 2 protein-coding 640050 XR_140756 Gm7285 EG640050 - 5 G2|5 predicted gene 7285 pseudo 102637709 XR_373588 Gm34450 - - 1 C5|1 predicted gene, 34450 ncRNA 111295 Slc11a1-rs1 Nramp-rs1 - - solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1, related sequence 1 pseudo 100035828 Hdl39 - - 11 41.87 cM HDL level 39 unknown 73951 Mm.389936 NR_045614 4930413G21Rik - - 7|7 F2 RIKEN cDNA 4930413G21 gene ncRNA 102639271 XR_377339 Gm35621 - - 6 A1|6 predicted gene, 35621 ncRNA 100036306 Bntq16 - - - bone traits QTL 16 unknown 258422 Mm.377491 NM_146430 ENSMUSG00000068431 Olfr742 MOR106-6 - 14|14 C1 olfactory receptor 742 protein-coding 100124359 Traj30 Gm16672 - 14|14 C2 T cell receptor alpha joining 30 other 66282 Mm.294985 NM_025465 ENSMUSG00000025591 Tma16 1810029B16Rik - 8|8 B3.1 translation machinery associated 16 protein-coding 21268 T(7;19)10Gso T10Gso - - reciprocal translocation, Chr 7 and 19, Generoso 10 other 100035194 Pbwg15 - - - postnatal body weight growth 15 unknown 20731 Mm.25246 NM_011463 ENSMUSG00000028415 Spink4 MPGC60 - 4|4 A5 serine peptidase inhibitor, Kazal type 4 protein-coding 100036096 Cplaq10 - - 12 15.9 cM circadian period of locomotor activity 10 unknown 108911 Mm.253 NM_173867 ENSMUSG00000040945 Rcc2 2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470 - 4|4 D3 regulator of chromosome condensation 2 protein-coding 664840 Gm12643 - - 4|4 C5 predicted gene 12643 pseudo 71362 Mm.410781 NR_045859 ENSMUSG00000115548 5430440P10Rik - - 14|14 E2.3 RIKEN cDNA 5430440P10 gene ncRNA 109280058 LOC109280058 Mm466 - - VISTA enhancer mm466 biological-region 104353 Rec2 Rec-2 - - ecotropic MuLV M813 receptor protein-coding 105246407 XR_877320 Gm41699 - - 18 B2|18 predicted gene, 41699 ncRNA 72462 Mm.102761 NM_028244 ENSMUSG00000058392 Rrp1b 2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179 - 17|17 B1 ribosomal RNA processing 1 homolog B (S. cerevisiae) protein-coding 170823 Mm.41417 NM_133248 ENSMUSG00000029276 Glmn 9330160J16Rik|AW227515|Fap48|Fap68 - 5|5 E5 glomulin, FKBP associated protein protein-coding 236784 Mm.377255 NM_207240 ENSMUSG00000071764 Olfr1320 GA_x6K02T2Q64A-11736563-11737522|MOR122-3 - X|X A5 olfactory receptor 1320 protein-coding 78378 1700006P03Rik - - 1|1 RIKEN cDNA 1700006P03 gene protein-coding 68692 Mm.416843 NR_045470 ENSMUSG00000099139 1110028F18Rik - - 8|8 D3 RIKEN cDNA 1110028F18 gene ncRNA 665793 Gm7786 EG665793 - 7|7 A1 predicted gene 7786 pseudo 67495 Mm.32615 NM_026198 ENSMUSG00000068732 Tmem167b 2010200O16Rik - 3|3 F3 transmembrane protein 167B protein-coding 105244186 XR_866370 Gm39839 - - 2 C1.3|2 predicted gene, 39839 ncRNA 104506 AU022194 - - - expressed sequence AU022194 unknown 102640634 XR_386287 Gm36651 - - 18 E1|18 predicted gene, 36651 ncRNA 11549 Mm.57064 NM_013461 ENSMUSG00000045875 Adra1a Adra1c - 14|14 D1 adrenergic receptor, alpha 1a protein-coding 270210 Mm.473702 NM_001166644 ENSMUSG00000013419 Zfp651 4732420M22Rik|BC030045|R74626 - 9|9 F4 zinc finger protein 651 protein-coding 545947 Mm.485759 NM_001199336 ENSMUSG00000096467 Scgb2b19 Abpbg19|Gm5894 - 7|7 B1 secretoglobin, family 2B, member 19 protein-coding 211914 Mm.358946 NM_001004364 ENSMUSG00000052632 Asap2 6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP - 12|12 A1.2-A1.3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 100417462 Gm18624 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 102632520 XR_376235 Gm30575 - - 3 H3|3 predicted gene, 30575 ncRNA 105242667 XR_869126 Gm38820 - - 6 B3|6 predicted gene, 38820 ncRNA 381531 Mm.472122 NM_001009550 ENSMUSG00000066153 Mup21 Gm11208|Mup|Mup26|bM64F17.1|bM64F17.4 - 4 B3|4 major urinary protein 21 protein-coding 105244621 XR_867906 Gm40204 - - 4 C5|4 predicted gene, 40204 ncRNA 83922 Mm.65389 NM_031998 ENSMUSG00000029790 Cep41 1700017E11Rik|2810431D15Rik|Tsga14 - 6|6 A3.3 centrosomal protein 41 protein-coding 17988 Mm.30837 NM_008681 ENSMUSG00000005125 Ndrg1 CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5 - 15|15 D2 N-myc downstream regulated gene 1 protein-coding 666553 Gm15528 EG666553 - 13 C1|13 WD repeat domain 77 pseudogene pseudo 107503 Mm.389890 NM_030693 ENSMUSG00000038539 Atf5 AFTA|Atf7|Atfx|ODA-10 - 7|7 B3 activating transcription factor 5 protein-coding 100504390 Gm15366 - - 8 A1.3|8 10.35 cM UPF0492 protein C20orf94 homolog pseudo 102637997 XR_382532 Gm34672 - - 13 B2|13 predicted gene, 34672 ncRNA 100035170 Agnm1 - - 4 24.66 cM autoimmune glomerulonephritis in MRL 1 unknown 102635774 XR_388676 Gm33026 - - 11 B1.3|11 predicted gene, 33026 ncRNA 100036175 Hfem1 - - - Hfe modifier 1 unknown 236844 Gm4910 EG236844 - X|X A7.1 ribosomal protein L22 like 1 pseudogene pseudo 319684 Mm.399746 NR_015558 5031425F14Rik - - 2|2 H3 RIKEN cDNA 5031425F14 gene ncRNA 100418032 Gm18956 - - 1|1 A1 coenzyme Q2 homolog, prenyltransferase pseudogene pseudo 102589 Mm.443571 AI835735 - - - expressed sequence AI835735 unknown 12991 Mm.268737 NM_009972 ENSMUSG00000063157 Csn2 Csnb - 5 E1|5 43.56 cM casein beta protein-coding 108168655 XM_017318866 LOC108168655 - - Y D Y-linked testis-specific protein 1-like protein-coding 627985 Trmt112-ps2 Gm13072 - 4|4 E2 tRNA methyltransferase 11-2, pseudogene 2 pseudo 102633876 Gm29098 - - Y|Y predicted gene 29098 ncRNA 21181 T(4;19)1Ad T1Ad - - reciprocal translocation, Chr 4 and 19, Adler 1 other 16434 Mm.21399 NM_025922 ENSMUSG00000074797 Itpa 2010016I08Rik|AU020102|ITPase|Itp|NTPase - 2 F1|2 63.24 cM inosine triphosphatase (nucleoside triphosphate pyrophosphatase) protein-coding 223254 Mm.223980 NM_134082 ENSMUSG00000025555 Farp1 AW228844|BC030329|Cdep - 14|14 E5 FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived) protein-coding 50793 Mm.399624 NM_015824 ENSMUSG00000040044 Orc3 Orc3l - 4|4 A5 origin recognition complex, subunit 3 protein-coding 108168937 XR_001784271 Gm46850 - - 4 A5|4 predicted gene, 46850 ncRNA 62572 D12Mit148 - - 12 18.06 cM DNA segment, Chr 12, Massachusetts Institute of Technology 148 unknown 102638226 Gm14769 - - X C1|X 38.75 cM predicted gene 14769 pseudo 623412 Gm6427 EG623412 - X|X E1 replication factor C (activator 1) 4 pseudogene pseudo 100418132 Gm19023 - - 19|19 C1 ATPase, H+ transporting, lysosomal V1 subunit E1 pseudogene pseudo 105244306 XR_866761 Gm39941 - - 2 F3|2 predicted gene, 39941 ncRNA 100417518 Gm18663 - - 16|16 C3.1 SUMO/sentrin specific peptidase 5 pseudogene pseudo 100043759 Gm14335 EG624617 - 6 E3|6 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene pseudo 102632036 Mm.333124 XR_869160 Gm30211 Gm43291 - 6 C1|6 predicted gene, 30211 ncRNA 235527 Mm.55289 NM_178711 ENSMUSG00000032377 Plscr4 AV245873 - 9|9 E3.3 phospholipid scramblase 4 protein-coding 102634169 NR_151693 Gm11917 - - 4 A4|4 12.75 cM predicted gene 11917 ncRNA 104479 Mm.210403 NM_134033 ENSMUSG00000020482 Ccdc117 1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601 - 11|11 A1 coiled-coil domain containing 117 protein-coding 442797 Mm.490811 NM_001002767 6330444E15Rik - - 7|7 B1 RIKEN cDNA 6330444E15 gene unknown 100628614 NR_039584 ENSMUSG00000096377 Mir5123 mmu-mir-5123|mu-mir-5123 - 4 A5|4 20.53 cM microRNA 5123 ncRNA 667217 Gm8521 EG667217 - Y|Y A1 predicted gene 8521 pseudo 75820 Mm.50361 NM_029453 ENSMUSG00000026523 Wdr64 4930415O10Rik|4930511H01Rik - 1|1 H3 WD repeat domain 64 protein-coding 108169191 Gm44083 - - 6 C1|6 predicted gene, 44083 pseudo 107522 Mm.263319 NM_139293 ENSMUSG00000022842 Ece2 1810009K13Rik|6330509A19Rik|9630025D12Rik|BB127715|Ece-2|Eef1akmt4-Ece2 - 16|16 B1 endothelin converting enzyme 2 protein-coding 100504047 Gm20032 - - 4|4 5.74 cM predicted gene, 20032 pseudo 102632439 Snrpert Gm14284 - 2 F1|2 63.32 cM small nuclear ribonucleoprotein E, pseudogene pseudo 102632689 Mm.127723 XR_385066 Gm30695 - - 16 C4|16 predicted gene, 30695 ncRNA 108169200 XR_001785444 Gm46987 - - 6 G1|6 predicted gene, 46987 ncRNA 66875 Mm.290905 NM_025819 ENSMUSG00000052748 Swt1 1200016B10Rik|C1orf26 - 1|1 G1 SWT1 RNA endoribonuclease homolog (S. cerevisiae) protein-coding 102632247 XR_881223 Gm30377 - - 4 B1|4 predicted gene, 30377 ncRNA 102635957 XR_375914 Gm33162 - - 3 F2.2|3 predicted gene, 33162 ncRNA 105245042 Gm40553 - - 9|9 predicted gene, 40553 ncRNA 108168775 XR_001783390 Gm46752 - - 2 E1|2 predicted gene, 46752 ncRNA 61408 D5Mit173 - - 5 64.09 cM DNA segment, Chr 5, Massachusetts Institute of Technology 173 unknown 207157 Mm.57632 NM_177579 ENSMUSG00000052236 Gm9871 0610005I04|EG207157 - 6 D3|6 predicted gene 9871 ncRNA 625662 Mm.297584 XM_006517797 ENSMUSG00000109561 Ankrd31 - - 13|13 D1 ankyrin repeat domain 31 protein-coding 111925 Iap3rb11 - - - intracisternal A-type particle, U3 region, SINE repeat b-11 other 234729 Mm.274894 NM_146216 ENSMUSG00000010936 Vac14 AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls - 8 D3-E1|8 57.59 cM Vac14 homolog (S. cerevisiae) protein-coding 320790 Mm.138792 NM_001033395 ENSMUSG00000041235 Chd7 A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis - 4 A1|4 3.68 cM chromodomain helicase DNA binding protein 7 protein-coding 73855 Mm.399165 XR_379819 4930429P21Rik - - 9|9 F1 RIKEN cDNA 4930429P21 gene ncRNA 71653 Mm.37338 NM_175172 ENSMUSG00000041362 Shtn1 4930506M07Rik|Shootin1|mKIAA1598 - 19|19 D2-D3 shootin 1 protein-coding 100416256 Gm12370 - - 4|4 A5 predicted gene 12370 pseudo 102631793 XR_380595 Gm30039 - - 10 C1|10 predicted gene, 30039 ncRNA 71321 Mm.410785 NR_045344 ENSMUSG00000097082 4933440J02Rik - - 10|10 D1 RIKEN cDNA 4933440J02 gene ncRNA 19346 Mm.28650 NM_024287 ENSMUSG00000030704 Rab6a 2610028L11Rik|AA419671|Rab6 - 7|7 E2 RAB6A, member RAS oncogene family protein-coding 108168742 Mm.416860 NR_153862 Gm13427 - - 2 21.86 cM|2 B predicted gene 13427 ncRNA 100040835 Gm2991 - - 15 D1|15 C protein (AA 1-159) pseudo 102465650 NR_106041 ENSMUSG00000106145 Mir7073 mmu-mir-7073 - 8|8 D1 microRNA 7073 ncRNA 100418451 Gm19219 - - 9|9 C protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform pseudogene pseudo 57349 Mm.293614 NM_023785 ENSMUSG00000029372 Ppbp 2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG - 5|5 E1 pro-platelet basic protein protein-coding 102465540 NR_105862 ENSMUSG00000098752 Mir6897 Gm27652|mmu-mir-6897 - 1|1 B microRNA 6897 ncRNA 61038 D9Mit161 - - 9 2.54 cM DNA segment, Chr 9, Massachusetts Institute of Technology 161 unknown 21983 Mm.20864 NM_011627 ENSMUSG00000035274 Tpbg 5T4|AW495680|WAIF1 - 9|9 E3.1 trophoblast glycoprotein protein-coding 106251 D230034L24Rik AI664004 - 16|16 C3.1 RIKEN cDNA D230034L24 gene protein-coding 67923 Mm.289248 NM_026456 ENSMUSG00000079658 Eloc 2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1 - 1|1 A3 elongin C protein-coding 26754 Mm.402384 NM_013715 ENSMUSG00000025917 Cops5 AI303502|CSN5|Jab1|Mov34|Sgn5 - 1 A2|1 2.29 cM COP9 signalosome subunit 5 protein-coding 545701 Gm13226 - - 4|4 E1 predicted gene 13226 pseudo 111480 Xmmv67 Xmmv-67|Xp-26 - - xenotropic-MCF leukemia virus 67 other 622266 Gm15007 EG622266 - X|X F1 predicted gene 15007 protein-coding 751561 NR_030464 ENSMUSG00000104758 Mir691 Mirn691|mir-691|mmu-mir-691 - 16 C3.1|16 microRNA 691 ncRNA 231327 Mm.202337 NM_172146 ENSMUSG00000029246 Ppat 5730454C12Rik|AA408689|AA675351|AI507113|C79945 - 5|5 C3.3 phosphoribosyl pyrophosphate amidotransferase protein-coding 104036 Lop3 Lop-3 - - lens opacity 3 protein-coding 229277 Mm.222810 NM_153156 ENSMUSG00000027744 Stoml3 Epb7.2l|SLP3|sro - 3|3 C stomatin (Epb7.2)-like 3 protein-coding 20947 Mm.334144 NM_009302 ENSMUSG00000031015 Swap70 70kDa|AV235546 - 7 E3|7 57.7 cM SWA-70 protein protein-coding 13684 Mm.3941 NM_007917 ENSMUSG00000028156 Eif4e EG668879|Eif4e-ps|If4e|eIF-4E - 3 G3|3 64.3 cM eukaryotic translation initiation factor 4E protein-coding 102467463 n-TAtgc10 n-Ta39 - 5 G1.1|5 nuclear encoded tRNA alanine 10 (anticodon TGC) tRNA 74484 Mm.359538 NM_028970 ENSMUSG00000095365 Rbm31y 4933434H11Rik - Y|Y A1 RNA binding motif 31, Y-linked protein-coding 105245409 XR_872572 Gm40870 - - 12 A1.3|12 predicted gene, 40870 ncRNA 70233 Mm.28050 NM_027353 ENSMUSG00000042502 Cd2bp2 1500011B02Rik|2410024K20Rik|AW048183 - 7|7 F3 CD2 antigen (cytoplasmic tail) binding protein 2 protein-coding 329909 Mm.32000 XM_006503496 Tmem61 4732441L20Rik - 4|4 C7 transmembrane protein 61 protein-coding 102637066 XR_373577 Gm33970 - - 1 C4|1 predicted gene, 33970 ncRNA 102410 AA517548 - - - expressed sequence AA517548 unknown 78609 Mm.160102 NM_030135 ENSMUSG00000027444 8030411F24Rik Cst14 - 2|2 G3 RIKEN cDNA 8030411F24 gene protein-coding 105242769 XR_869427 Gm24175 - - 6 F2|6 predicted gene, 24175 ncRNA 669222 Gm9445 - - 7|7 C perilipin 3 pseudogene pseudo 15581 hy1 hy-1 - - hydrocephalus 1 unknown 110134 Rmv3 Rmv-3 - - resistance to Moloney virus 3 protein-coding 319377 Mm.483805 NM_176903 D130012P04Rik - - 11|11 B5 RIKEN cDNA D130012P04 gene unknown 114748 Daq18 D2.2 - 2 62.89 cM directional asymmetry QTL 18 unknown 17913 Mm.234502 NM_008659 ENSMUSG00000017774 Myo1c C80397|MMIb|MYO1E|NMI|mm1beta|myr2 - 11 B5|11 45.92 cM myosin IC protein-coding 257973 Mm.377319 NM_001011792 Olfr207 MOR182-9 - 16|16 C1.3 olfactory receptor 207 protein-coding 111974 Mkrn3os Zfp127as - - makorin, ring finger protein 3, opposite strand ncRNA 109738 Cat4 Anc|Apc-1|Apcat-1|Apcat1|Apyc|Pcs-2|anisocoria - - dominant cataract 4 protein-coding 105243349 XR_870555 Gm39296 - - 9 A2|9 predicted gene, 39296 ncRNA 102635447 Mm.415364 Ccdc142os Gm15605 - 6|6 35.94 cM coiled-coil domain containing 142, opposite strand ncRNA 105243192 XR_870434 Gm39181 - - 8 B1.3|8 predicted gene, 39181 ncRNA 101973 AA682107 - - - expressed sequence AA682107 unknown 380967 Mm.196630 NM_201359 ENSMUSG00000052369 Tmem106c AI046681|BC046621|D15Ertd405e - 15 F1|15 53.96 cM transmembrane protein 106C protein-coding 100503288 Gm13778 - - 2|2 50.44 cM predicted gene 13778 ncRNA 61588 D9Mit290 - - 9 47.24 cM DNA segment, Chr 9, Massachusetts Institute of Technology 290 unknown 243339 Mm.126793 NM_177735 ENSMUSG00000043388 Tmem130 BC067004|C130036G08 - 5|5 G2 transmembrane protein 130 protein-coding 102467397 n-TYgta6 n-Ty6 - 13 A3.1|13 nuclear encoded tRNA tyrosine 6 (anticodon GTA) tRNA 620480 Gm6155 EG620480 - 7|7 D3 predicted pseudogene 6155 pseudo 224753 Mm.246581 NM_177634 ENSMUSG00000048231 H2-M10.4 15H - 17 B1|17 19.09 cM histocompatibility 2, M region locus 10.4 protein-coding 102639946 XR_387462 Gm36139 - - 1 G1|1 predicted gene, 36139 ncRNA 105244519 XR_867536 Gm40113 - - 3 F2.2|3 predicted gene, 40113 ncRNA 71720 Mm.44153 NM_027881 ENSMUSG00000029822 Osbpl3 1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3 - 6|6 B2.3 oxysterol binding protein-like 3 protein-coding 20821 Mm.321227 NM_009277 ENSMUSG00000030966 Trim21 Ro52|Ssa1 - 7|7 E3 tripartite motif-containing 21 protein-coding 113856 Mm.377153 NM_053229 ENSMUSG00000061653 Vmn1r46 V1rb8 - 6|6 D1 vomeronasal 1 receptor 46 protein-coding 319169 Mm.370338 NM_178183 ENSMUSG00000063021 Hist1h2ak - - 13|13 A3.1 histone cluster 1, H2ak protein-coding 102636795 XR_378045 LOC102636795 - - 6 F3 uncharacterized LOC102636795 ncRNA 56741 Mm.209041 NM_020043 ENSMUSG00000032816 Igdcc4 DDM36|Nope - 9|9 C immunoglobulin superfamily, DCC subclass, member 4 protein-coding 16171 Mm.5419 NM_010552 ENSMUSG00000025929 Il17a Ctla-8|Ctla8|IL-17|IL-17A|Il17 - 1|1 A4 interleukin 17A protein-coding 619734 Gm6096 EG619734 - 7|7 B1 predicted gene 6096 protein-coding 23991 Mm.30217 NM_011870 ENSMUSG00000030538 Cib1 Cibkip|Kip|Prkdcip - 7|7 D2 calcium and integrin binding 1 (calmyrin) protein-coding 111633 Ms3 MMS3 - - minisatellites detected by probe MMS3 other 100035683 Ccmp9 - - - cerebellar cAMP 9 unknown 100416216 Gm17973 - - 1|1 E2.3 predicted gene, 17973 pseudo 105245265 XR_871960 Gm40743 - - 10 C2|10 predicted gene, 40743 ncRNA 112106 Bgeq7 - - 8 32.3 cM body growth early QTL 7 unknown 102640447 XR_388617 Gm36507 - - 11 B1.2|11 predicted gene, 36507 ncRNA 53022 M6SP6 - - - DNA segment, M6SP6 unknown 111559 Pmv65 Pmv-65 - - polytropic murine leukemia virus 65 other 112313 Char1 - - 9 51.41 cM P. chabaudi malaria resistance QTL 1 unknown 109512 Alcp13 - - - alcohol preference locus 13, female specific unknown 259159 Mm.377843 NM_147097 ENSMUSG00000096516 Olfr628 MOR22-1|MOR22-4P|Olfr1526-ps1 - 7|7 E3 olfactory receptor 628 protein-coding 664861 Gm7375 EG664861 - X A2|X predicted pseudogene 7375 pseudo 18639 Mm.249131 NM_008824 ENSMUSG00000025271 Pfkfb1 PFK/FBPase 1 - X|X F3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 protein-coding 359926 DXMgc64 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 64 unknown 100040476 Gm14464 - - 2|2 C3 predicted gene 14464 pseudo 102640033 XR_866725 Gm36203 - - 2 F1|2 predicted gene, 36203 ncRNA 100417717 Gm18779 - - 7|7 D3 zinc finger, CCHC domain containing 14 pseudogene pseudo 245573 Gm4991 EG245573 - X|X D karyopherin (importin) alpha 2 pseudogene pseudo 102467314 n-TGgcc12 n-Tg17 - 1 H3|1 nuclear encoded tRNA glycine 12 (anticodon GCC) tRNA 100217450 Mm.442313 NR_034043 ENSMUSG00000088108 Snora47 MBI-115 - 13 D1|13 small nucleolar RNA, H/ACA box 47 snoRNA 100035918 Knyw2 - - - kidney weight 2 unknown 72315 Mm.297777 NM_001166164 ENSMUSG00000041617 Ccdc74a 2310015A05Rik - 16|16 A3 coiled-coil domain containing 74A protein-coding 105274305 LOC105274305 - - 11 A2 ubiquitin-like domain containing CTD phosphatase 1 pseudogene pseudo 14255 Mm.194 NM_010229 ENSMUSG00000042817 Flt3 B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl - 5 86.88 cM|5 G3 FMS-like tyrosine kinase 3 protein-coding 105247312 XR_882603 LOC105247312 - - - uncharacterized LOC105247312 ncRNA 100034859 Pgia27 - - 4 40.86 cM proteoglycan induced arthritis 27 unknown 100035422 Slcs1 - - - silicosis susceptibility 1 unknown 102466209 NR_105912 ENSMUSG00000104926 Mir6947 mmu-mir-6947 - 14|14 B microRNA 6947 ncRNA 100113414 Trav4-4-dv10 Gm13908|Trav4-4/dv10 - 14|14 C2 T cell receptor alpha variable 4-4-DV10 other 492984 Kidq4 - - - kidney weight QTL 4 unknown 100418088 Gm18993 - - 18|18 C cyclin-dependent kinase 9 (CDC2-related kinase) pseudogene pseudo 99779 AU015247 - - - expressed sequence AU015247 protein-coding 100038636 Mm.450138 NR_152190 B230344G16Rik - - 11 E2|11 RIKEN cDNA B230344G16 gene ncRNA 61857 D1Mit381a D1Mit381 - 1 35.24 cM DNA segment, Chr 1, Massachusetts Institute of Technology 381a unknown 100502657 Gm19308 - - 13|13 47.64 cM 60S ribosomal protein L32-like pseudo 108812 Mm.442063 NM_175370 ENSMUSG00000047528 Als2cr12 4933405P16Rik|4933425F06Rik - 1|1 C1.3 amyotrophic lateral sclerosis 2 chromosome region 12 protein-coding 619750 Mif-ps3 EG619750|Gm6097 - 3|3 F1 macrophage migration inhibitory factor, pseudogene 3 pseudo 667239 Mup-ps10 Gm13512 - 4|4 B3 major urinary protein, pseudogene 10 pseudo 668360 Gm9126 EG668360 - X|X D DMRT-like family C1b pseudogene pseudo 102637919 XR_381456 Gm34611 - - 12 A3|12 predicted gene, 34611 ncRNA 347712 Mm.6018 NM_178250 ENSMUSG00000025839 Pramel7 AA675346|C81180 - 2|2 D preferentially expressed antigen in melanoma like 7 protein-coding 621880 Gm12387 - - 4|4 A5 PDZ binding kinase pseudogene pseudo 102467592 n-TSaga4 n-Ts4 - 11 B3|11 nuclear encoded tRNA serine 4 (anticodon AGA) tRNA 27636 D0Dcr13 - - - DNA segment, Derry C. Roopenian 13 unknown 100126465 Trav6-6 Gm16981 - 14|14 C2 T cell receptor alpha variable 6-6 other 102465207 NR_105814 ENSMUSG00000098780 Mir6390 Gm27562|mmu-mir-6390 - 14|14 E2.3 microRNA 6390 ncRNA 330819 Gm5118 A330085E11|EG330819 - 8|8 C3 predicted gene 5118 ncRNA 100042171 Gm10161 - - 7|7 D1 ribosomal protein S28 pseudogene pseudo 107371 Mm.24865 NM_175353 ENSMUSG00000053799 Exoc6 4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15 - 19 C2|19 32.32 cM exocyst complex component 6 protein-coding 102634640 Gm28806 - - 12|12 predicted gene 28806 protein-coding 52592 Mm.24761 NM_027867 ENSMUSG00000012076 Brms1l 0710008O11Rik|AI159718|BRMS1|D12Ertd407e - 12 C1|12 24.18 cM breast cancer metastasis-suppressor 1-like protein-coding 78068 Mm.261511 NR_108091 ENSMUSG00000053545 6430503K07Rik - - 2|2 G2 RIKEN cDNA 6430503K07 gene ncRNA 62668 D15Mit135 - - 15 9.87 cM DNA segment, Chr 15, Massachusetts Institute of Technology 135 unknown 260412 Desp2 Tst-1 - 11 27.44 cM despair 2 unknown 105244930 XR_869883 Gm40452 - - 7 F1|7 predicted gene, 40452 ncRNA 432396 Mm.426849 NR_045780 ENSMUSG00000086191 Zfp652os 1110035M17Rik - 11 D|11 zinc finger protein 652, opposite strand ncRNA 21136 T(2;4)1Sn T1Sn - - reciprocal translocation, Chr 2 and 4, Snell 1 other 72302 1810057I12Rik - - 17|17 RIKEN cDNA 1810057I12 gene protein-coding 102641539 XR_866391 Gm13596 - - 2 C1.3|2 39.53 cM predicted gene 13596 ncRNA 100041689 Gm3473 - - 10 B3|10 predicted gene 3473 pseudo 83485 Mm.21175 NM_031375 ENSMUSG00000047084 Ngrn AW552001 - 7|7 D2 neugrin, neurite outgrowth associated protein-coding 111781 Iapls1-11 - - - intracisternal A particle, lymphocyte specific 1-11 other 654455 Mm.424927 NR_002880 Gm21944 Defb48-ps - 8 A2|8 defensin beta 48 pseudogene pseudo 102635088 XR_385917 Gm32512 - - 17 E5|17 predicted gene, 32512 ncRNA 100418194 Gm19067 - - 3|3 A1 transforming, acidic coiled-coil containing protein 3 pseudogene pseudo 83602 Mm.275728 NM_031391 ENSMUSG00000020962 Gtf2a1 6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1 - 12 D3|12 general transcription factor II A, 1 protein-coding 674699 Gm9626 - - 13|13 B3 predicted gene 9626 pseudo 102638677 XR_386733 Gm35183 - - 19 C3|19 predicted gene, 35183 ncRNA 622222 Mm.480269 NM_001166727 ENSMUSG00000095632 Vmn1r175 EG622222|Gm6299 - 7|7 A3 vomeronasal 1 receptor 175 protein-coding 105245682 XM_011244853 Gm41099 - - 14 A2|14 predicted gene, 41099 protein-coding 56787 Mm.29275 NM_020051 ENSMUSG00000035951 Ascl3 Sgn1|bHLHa42 - 7 E3|7 57.46 cM achaete-scute family bHLH transcription factor 3 protein-coding 668001 Gm8920 EG668001 - 5 A1|5 anaphase-promoting complex subunit 5 pseudogene pseudo 105244104 XR_866074 Gm39777 - - 2 A3|2 predicted gene, 39777 ncRNA 668763 Gm9340 EG668763 - 7|7 F5 predicted gene 9340 protein-coding 100036415 Sox10m5 Agln4|Sox10m|Sox10m6 - - Sox10Dom modifier 5 unknown 102465782 NR_106147 ENSMUSG00000099172 Mir3620 Gm27984|mmu-mir-3620 - X|X F3 microRNA 3620 ncRNA 102640856 XR_384635 Gm36824 - - 16 A1|16 predicted gene, 36824 ncRNA 14811 Mm.2953 NM_008170 ENSMUSG00000059003 Grin2a GluN2A|GluRepsilon1|NMDAR2A|NR2A - 16 A1|16 5.28 cM glutamate receptor, ionotropic, NMDA2A (epsilon 1) protein-coding 53954 Mm.1248 W77162 - - - EST W77162 protein-coding 72421 Mm.275109 NM_028235 ENSMUSG00000075273 Ttc30b 2510042P03Rik|Tcc30b - 2|2 C3 tetratricopeptide repeat domain 30B protein-coding 100039078 XM_006535349 Gm2036 - - X A2|X predicted gene 2036 protein-coding 102632942 XR_390832 Gm30888 - - 4 D3|4 predicted gene, 30888 ncRNA 50933 Mm.275970 NM_016723 ENSMUSG00000022111 Uchl3 - - 14 E2.3|14 50.9 cM ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) protein-coding 77887 6720454L07Rik - - 11|11 RIKEN cDNA 6720454L07 gene protein-coding 665331 Rhox7-ps1 EG665331|Gm7590|Rhox7-ps - X|X A3.3 reproductive homeobox 7, pseudogene 1 pseudo 52756 D9Ucl1e - - - DNA segment, Chr 9, University College London 1, expressed unknown 21273 T(8;10)8Ad T8Ad - - reciprocal translocation, Chr 8 and 10, Adler 8 other 102640203 XM_017321859 Gm36327 - - 6 B2.3|6 predicted gene, 36327 protein-coding 105243880 XR_872281 Gm39605 - - 11 A3.1|11 predicted gene, 39605 ncRNA 109415 Imm1 - - - IgM serum level modifier 1 unknown 105246018 XR_875572 LOC105246018 - - 15 E3 uncharacterized LOC105246018 ncRNA 76455 Mm.443352 XR_881379 2310067E19Rik - - 4|4 C3 RIKEN cDNA 2310067E19 gene unknown 100035390 Mskt2 - - - musculoskeletal traits 2 unknown 61727 D5Mit274 - - 5 44.32 cM DNA segment, Chr 5, Massachusetts Institute of Technology 274 unknown 102216269 NR_104334 Gm38436 Cistr|Cistr-act - 15 F3|15 predicted gene, 38436 ncRNA 546336 Mm.211712 NM_027322 ENSMUSG00000047996 Prrg1 2010007L08Rik - X|X B proline rich Gla (G-carboxyglutamic acid) 1 protein-coding 780959 Ighv1-68 - - 12|12 F2 immunoglobulin heavy variable V1-68 pseudo 546719 Gm5971 EG546719 - 18|18 E4 SNW domain containing 1 pseudogene pseudo 61424 D5Mit223 - - 5 86.57 cM DNA segment, Chr 5, Massachusetts Institute of Technology 223 unknown 224318 Mm.212743 NM_173069 ENSMUSG00000063163 Speer2 SPEER-2 - 16|16 C2 spermatogenesis associated glutamate (E)-rich protein 2 protein-coding 16642 Mm.347927 NM_010653 ENSMUSG00000052736 Klrc2 NKG2C - 6|6 F3 killer cell lectin-like receptor subfamily C, member 2 protein-coding 105246890 XR_880286 Gm42093 - - 11 E1|11 predicted gene, 42093 ncRNA 66052 Mm.198138 NM_025321 ENSMUSG00000058076 Sdhc 0610010E03Rik|AI316496|AU019277 - 1|1 H3 succinate dehydrogenase complex, subunit C, integral membrane protein protein-coding 61334 D3Mit197 - - 3 68.71 cM DNA segment, Chr 3, Massachusetts Institute of Technology 197 unknown 105242567 Gm38743 - - 5|5 predicted gene, 38743 protein-coding 110056 Tks - - - radiation induced tail kinks unknown 117211 kkt - - - kyphoscoliosis kinked tail unknown 102467277 n-TCgca25 n-Tc25 - 6 B2.3|6 nuclear encoded tRNA cysteine 25 (anticodon GCA) tRNA 245886 Mm.272620 NM_145633 ENSMUSG00000034867 Ankrd27 AA408090|BC016493|D330003H11Rik|Varp - 7|7 B2 ankyrin repeat domain 27 (VPS9 domain) protein-coding 109910 Mm.290924 NM_053009 ENSMUSG00000024695 Zfp91 9130014I08Rik|A530054C17Rik|AL024263|AW545902|Pzf|Zfp-91 - 19 A|19 8.73 cM zinc finger protein 91 protein-coding 433873 Mm.240488 NM_001004179 ENSMUSG00000097271 Gm9903 EG433873 - 5 B1|5 predicted gene 9903 unknown 103979 Alph1 Aph-1|Aph1 - - alphaprotein 1 protein-coding 100526483 NR_037251 ENSMUSG00000104734 Mir669a-5 mmu-mir-669a-5 - 2 A1|2 8.22 cM microRNA 669a-5 ncRNA 791397 Mm.484181 Gm9972 - - - predicted gene 9972 unknown 102633133 XR_388069 Gm31037 - - 8 E1|8 predicted gene, 31037 ncRNA 102638117 XR_378057 Gm34755 - - 6 F3|6 predicted gene, 34755 ncRNA 100503082 Mm.33719 XR_001782407 2010110K18Rik - - 18|18 B1 RIKEN cDNA 2010110K18 gene unknown 100038449 Mm.491801 Gm10755 - - 19 D2|19 predicted gene 10755 unknown 28175 D16Ium36e D16Ium36 - - DNA segment, Chr 16, Indiana University Medical 36, expressed unknown 76220 Mm.330108 NR_029460 ENSMUSG00000079499 6530402F18Rik mKIAA1857 - 2|2 B RIKEN cDNA 6530402F18 gene ncRNA 114723 Skull15 E11.1|QTL-S11.1 - 11 5.78 cM skull morphology 15 unknown 84036 Mm.32074 NM_032397 ENSMUSG00000002908 Kcnn1 AI854248|KCa2.1|SK1 - 8|8 B3.3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1 protein-coding 102632272 XR_384137 Gm20717 - - 15 D1|15 28.57 cM predicted gene 20717 ncRNA 61759 D4Mit236 - - 4 20.0 cM DNA segment, Chr 4, Massachusetts Institute of Technology 236 unknown 258788 Mm.377692 NM_146792 ENSMUSG00000111715 Olfr1246 MOR2319 - 2|2 E1 olfactory receptor 1246 protein-coding 105246555 XR_877802 Gm41829 - - 19 C1|19 predicted gene, 41829 ncRNA 244667 Mm.233504 NM_170596 ENSMUSG00000043051 Disc1 - - 8 E2|8 73.26 cM disrupted in schizophrenia 1 protein-coding 102635028 XR_380679 Gm32468 - - 10 C2|10 predicted gene, 32468 ncRNA 105243304 XR_879258 Gm39264 - - 8 E1|8 predicted gene, 39264 ncRNA 75064 Mm.159414 NM_029158 ENSMUSG00000031330 Zcchc13 4930513O09Rik|Cnbp2 - X D|X 46.26 cM zinc finger, CCHC domain containing 13 protein-coding 68629 Mm.396278 1110013I04Rik - - 8|8 RIKEN cDNA 1110013I04 gene protein-coding 66354 Mm.271174 NM_025507 ENSMUSG00000021039 Snw1 2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip - 12|12 D2 SNW domain containing 1 protein-coding 18811 Mm.88796 NM_031191 ENSMUSG00000079092 Prl2c2 Ghd2|MRP-1|PLF-1|Plf|Plf1 - 13 A1|13 5.18 cM prolactin family 2, subfamily c, member 2 protein-coding 108021847 LOC108021847 - - - Sox9 enhancer E250 biological-region 100503766 Gm19883 - - 15 B1|15 10.71 cM 40S ribosomal protein S10-like pseudo 79234 Lamr1-ps1 67kDa - 2|2 F2 laminin receptor 1 (ribosomal protein SA), pseudogene 1 pseudo 211577 Mm.215151 NM_145379 ENSMUSG00000031070 Mrgprf BC019711|Mgrc|MrgF - 7|7 F5 MAS-related GPR, member F protein-coding 27281 Mm.103650 NM_013751 ENSMUSG00000022525 Hrasls 2810012B06Rik|A-C1|HRSL1|Hrasrs - 16|16 B2 HRAS-like suppressor protein-coding 28289 D10Jhu65 - - - DNA segment, Chr 10, Johns Hopkins University 65 unknown 105245020 Gm40534 - - 9|9 predicted gene, 40534 ncRNA 109006 Mm.27582 NM_134141 ENSMUSG00000031781 Ciapin1 2810413N20Rik|AA617265|AU021794|anamorsin - 8|8 C5 cytokine induced apoptosis inhibitor 1 protein-coding 75732 Mm.425285 NM_029408 ENSMUSG00000029601 Iqcd 4933433C09Rik|AI662646 - 5|5 F IQ motif containing D protein-coding 105245155 XR_871645 Gm40647 - - 10 B3|10 predicted gene, 40647 ncRNA 70920 Mm.158494 NM_027603 ENSMUSG00000040514 Tex47 4921511H03Rik - 5|5 A1 testis expressed 47 protein-coding 76635 1700110C23Rik - - 1|1 RIKEN cDNA 1700110C23 gene protein-coding 102636839 XM_006523120 Gm33798 - - 16 C3.3|16 predicted gene, 33798 protein-coding 102467403 n-TVcac2 n-Tv10 - 13 A3.1|13 nuclear encoded tRNA valine 2 (anticodon CAC) tRNA 237221 Mm.209490 NM_146238 ENSMUSG00000040621 Gemin8 B130034M20Rik|B930082C09Rik|BC023488|gemin-8 - X|X F5 gem nuclear organelle associated protein 8 protein-coding 442806 Mm.447164 E330033J05Rik - - 18|18 E4 RIKEN cDNA E330033J05 gene unknown 102640241 Mm.379214 XR_383496 4921532D01Rik - - 14|14 D1 RIKEN cDNA 4921532D01 gene ncRNA 109279916 LOC109279916 Mm149 - - VISTA enhancer mm149 biological-region 76009 5830415G21Rik - - 3|3 RIKEN cDNA 5830415G21 gene protein-coding 102639727 XR_378559 Gm35970 - - 7 F3|7 predicted gene, 35970 ncRNA 109788 Egm1 - - - egg modifier locus 1 protein-coding 105245061 XR_872958 Gm40565 - - 12 E|12 predicted gene, 40565 ncRNA 666323 Gm8047 EG666323 - 15|15 A1 predicted gene 8047 pseudo 108958 Mm.254974 NM_175392 ENSMUSG00000026858 Miga2 5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766 - 2|2 B mitoguardin 2 protein-coding 100169880 5830419E12Rik - - - RIKEN cDNA 5830419E12 gene protein-coding 85142 D6Mit299 - - 6 30.07 cM DNA segment, Chr 6, Massachusetts Institute of Technology 299 unknown 100415968 Gm17843 - - 3|3 H4 calponin 2 pseudogene pseudo 20860 Mm.89655 NM_023135 ENSMUSG00000029272 Sult1e1 EST|ST1E1|Ste - 5 E1|5 43.56 cM sulfotransferase family 1E, member 1 protein-coding 102636183 Mm.446701 NR_154466 Parvaos A230071N21Rik - 7|7 F1 parvin, alpha, opposite strand ncRNA 21947 Mm.4861 NM_011616 ENSMUSG00000031132 Cd40lg CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39 - X A6|X 31.21 cM CD40 ligand protein-coding 108254676 LOC108254676 - - - Pax5 mhb enhancer biological-region 102635128 XR_375010 Gm32546 - - 2 F3|2 predicted gene, 32546 ncRNA 102640148 Mm.336104 NR_155870 ENSMUSG00000112532 Gm36283 - - 10 D1|10 predicted gene, 36283 ncRNA 11947 Mm.238973 NM_016774 ENSMUSG00000025393 Atp5b Atp5f1b - 10|10 D3 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit protein-coding 110417 Mm.268317 NM_029988 ENSMUSG00000021120 Pigh 2210416H01Rik|A930028P05Rik - 12 C3|12 35.51 cM phosphatidylinositol glycan anchor biosynthesis, class H protein-coding 319835 A930104B17Rik - - 13|13 RIKEN cDNA A930104B17 gene protein-coding 102632571 XR_384356 Gm30609 - - 15 E3|15 predicted gene, 30609 ncRNA 225028 Mm.311948 NM_001081357 ENSMUSG00000024242 Map4k3 4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 - 17|17 E3 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 665315 Gm13397 - - 2|2 A3 ribosomal protein L6 pseudogene pseudo 74137 Mm.100666 NM_028778 ENSMUSG00000009772 Nuak2 1200013B22Rik|Omphk2|Snark|mKIAA0537 - 1|1 E4 NUAK family, SNF1-like kinase, 2 protein-coding 100846986 NR_144489 Pou5f1-rs1 Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a - 1 H1|1 POU domain, class 5, transcription factor 1, related sequence 1 pseudo 15120 hb - - - head bobber unknown 52478 Mm.394015 D6Ertd131e - - 6 64.64 cM DNA segment, Chr 6, ERATO Doi 131, expressed unknown 78319 Mm.384872 2700001H16Rik - - 10|10 RIKEN cDNA 2700001H16 gene protein-coding 18167 Mm.1433 NM_008731 ENSMUSG00000028004 Npy2r NPY2-R - 3 E3|3 36.49 cM neuropeptide Y receptor Y2 protein-coding 68925 Mm.30496 NM_177294 ENSMUSG00000034032 Rpap1 1190005L06Rik|A730023M06Rik|AU041788|AW107702|mKIAA1403 - 2|2 E5 RNA polymerase II associated protein 1 protein-coding 108287 Psma3-rs1 Lmpc8-rs1 - - proteasome (prosome, macropain) subunit, alpha type 3, related sequence 1 pseudo 110437 Evi22 - - - ecotropic viral integration site 22 protein-coding 111874 Iap3rb5 - - - intracisternal A-type particle, U3 region, SINE repeat b-5 other 108167887 XR_001780166 Gm46273 - - 11 A3.1|11 predicted gene, 46273 ncRNA 100038369 Mm.243323 F630201L12Rik - - - RIKEN cDNA F630201L12 gene unknown 100417420 Gm18602 - - 8|8 C3 abhydrolase domain containing 10 pseudogene pseudo 105245311 Gm40786 - - 10|10 predicted gene, 40786 ncRNA 110369 Tcrd-V4 - - - T cell receptor delta, variable 4 other 100041151 Mm.396155 NM_001309401 ENSMUSG00000091754 Gm3636 100042043 - 14 A1|14 predicted gene 3636 protein-coding 338359 Mm.235898 NM_181423 ENSMUSG00000020079 Supv3l1 6330443E10Rik - 10|10 B4 suppressor of var1, 3-like 1 (S. cerevisiae) protein-coding 102631818 XR_378476 Gm30059 - - 7 F2|7 predicted gene, 30059 ncRNA 100316675 NR_130329 ENSMUSG00000080409 Mir467h Mirn467h|mmu-mir-467h - 9 F3|9 67.82 cM microRNA 467h ncRNA 668027 Gm13700 - - 2|2 C3 WD repeat domain 55 pseudogene pseudo 21153 T(2;8)36Ad T36Ad - - reciprocal translocation, Chr 2 and 8, Adler 36 other 80906 Mm.213204 NM_030716 ENSMUSG00000025221 Kcnip2 KChIP2 - 19 C3|19 38.75 cM Kv channel-interacting protein 2 protein-coding 218989 Mm.85211 NM_172600 ENSMUSG00000036339 Tmem260 5930435P15|6720456H20Rik - 14|14 C1 transmembrane protein 260 protein-coding 102638940 XR_381943 LOC102638940 - - 12 F1 uncharacterized LOC102638940 ncRNA 16866 Mm.57061 NM_008497 ENSMUSG00000100916 Lhb Gm29035|LH|LH-B|LSH-B|LSH-beta - 7 B3|7 29.3 cM luteinizing hormone beta protein-coding 102632612 Gm30640 - - 2|2 predicted gene, 30640 ncRNA 102640235 XR_377349 Gm36352 - - 6 A1|6 predicted gene, 36352 ncRNA 100035866 Swrl3 - - - SWR lupus locus 3 unknown 100125846 Tbqt5 - - - tibia bone quality traits 5 unknown 21530 Tcra-V2.6 - - - T cell receptor alpha, variable 2.6 other 13326 Del(8)72H Del72H - - deletion, Chr 8, Harwell 72 other 76775 Mm.334631 NM_029736 ENSMUSG00000031684 Slc10a7 2410193C02Rik|P7 - 8|8 C1 solute carrier family 10 (sodium/bile acid cotransporter family), member 7 protein-coding 26563 Mm.57252 NM_013845 ENSMUSG00000035305 Ror1 2810404D04Rik|Ntrkr1 - 4 C6|4 45.71 cM receptor tyrosine kinase-like orphan receptor 1 protein-coding 100418075 Gm18983 - - 12|12 D2 RNA exonuclease 1 homolog pseudogene pseudo 67099 Mm.46394 NM_025964 ENSMUSG00000025956 Mettl21a 2310038H17Rik|AI464204|Fam119a - 1|1 C2 methyltransferase like 21A protein-coding 16363 Mm.1149 NM_008391 ENSMUSG00000031627 Irf2 9830146E22Rik|AI646973|Irf-2 - 8|8 B1.1 interferon regulatory factor 2 protein-coding 668271 Gm9078 EG668271 - X|X C3 predicted gene 9078 pseudo 62649 D14Mit163 - - 14 50.9 cM DNA segment, Chr 14, Massachusetts Institute of Technology 163 unknown 21209 T(5;14)2Gso T2Gso - - reciprocal translocation, Chr 5 and 14, Generoso 2 other 18979 Mm.237657 NM_011134 ENSMUSG00000002588 Pon1 Pon - 6 A1|6 1.99 cM paraoxonase 1 protein-coding 270097 Mm.334825 NM_173016 ENSMUSG00000046844 Vat1l 9430073I07|AI427515|mKIAA1576 - 8|8 E1 vesicle amine transport protein 1 like protein-coding 105246439 XR_877410 Gm41729 - - 18 D2|18 predicted gene, 41729 ncRNA 67790 Mm.45148 NM_175122 ENSMUSG00000031202 Rab39b 6330580M05Rik - X 38.26 cM|X A7.3 RAB39B, member RAS oncogene family protein-coding 102639991 XR_380203 ENSMUSG00000112758 Gm36172 - - 10 A4|10 predicted gene, 36172 ncRNA 75095 Mm.332354 NR_045416 ENSMUSG00000106741 4930513D17Rik - - 5|5 B3 RIKEN cDNA 4930513D17 gene ncRNA 105244790 XR_868579 Gm40340 - - 5 G2|5 predicted gene, 40340 ncRNA 20882 stm - - - stumpy unknown 100043903 Gm4718 - - 17 E4|17 predicted gene 4718 protein-coding 100125249 Trbj1-2 Gm16645 - 6 19.69 cM|6 B1 T cell receptor beta joining 1-2 other 213684 Igkv4-79 Gm194|IgVkae4 - 6|6 C1 immunoglobulin kappa variable 4-79 other 105246987 XR_880623 Gm42175 - - X A3.1|X predicted gene, 42175 ncRNA 667152 Gm8483 EG667152 - 14|14 A1 enolase 1, alpha non-neuron pseudogene pseudo 108168677 XR_001782938 Gm2172 100039344 - 4|4 protein FAM205A-like pseudo 52710 Mm.28597 NM_029643 ENSMUSG00000022560 Slc52a2 2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1 - 15 D3|15 36.04 cM solute carrier protein 52, member 2 protein-coding 14722 gp - - - gaping lids unknown 667669 Gm8752 EG667669 - 17|17 B1 archain 1 pseudogene pseudo 102634480 XR_385646 Gm32055 - - 17 C|17 predicted gene, 32055 ncRNA 77097 Mm.22501 NM_175492 ENSMUSG00000053580 Tanc2 3526402J09Rik|5730590C14Rik - 11|11 E1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 78772 Mm.29003 NM_030175 ENSMUSG00000053461 Hhipl2 4930507C10Rik|AW208802|Hhip3 - 1|1 H5 hedgehog interacting protein-like 2 protein-coding 100417808 Gm18841 - - 9|9 E3.3 alpha- and gamma-adaptin binding protein pseudogene pseudo 111230 Hmgb1-ps9 EG619937|Gm6115|Hmg-1RV-B|Hmg1-rs3|Hmgb1-rs3 - - high mobility group box 1, pseudogene 9 pseudo 66322 Mm.158111 NM_025487 ENSMUSG00000063971 Krt88 1700011A15Rik - 15|15 F2 keratin 88 protein-coding 442816 Mm.484429 NM_001002780 F830005K03Rik - - 16|16 A1 RIKEN cDNA F830005K03 gene ncRNA 57251 Mm.377130 NM_146904 ENSMUSG00000066899 Olfr870 MOR141-1|Olfr72 - 9|9 A3 olfactory receptor 870 protein-coding 626474 Gm6679 EG626474 - 1|1 E2.1 cylindromatosis (turban tumor syndrome) pseudogene pseudo 382427 Mm.339322 NM_001007583 ENSMUSG00000020169 Best3 Vmd2l3|mBest4 - 10|10 D2 bestrophin 3 protein-coding 102640498 XR_380209 Gm36543 - - 10 A4|10 predicted gene, 36543 ncRNA 432582 Mm.274369 NM_001013784 ENSMUSG00000069814 Ccdc92b E130309D14Rik - 11|11 B5 coiled-coil domain containing 92B protein-coding 676984 Gm9701 - - 3 E1|3 predicted gene 9701 pseudo 61172 D16Mit73 - - 16 8.31 cM DNA segment, Chr 16, Massachusetts Institute of Technology 73 unknown 100417035 Gm18375 - - 6|6 F2 predicted gene, 18375 pseudo 100417559 Gm12647 - - 4|4 C5 ring finger and WD repeat domain 2 pseudogene pseudo 69813 Mm.243754 2010001M07Rik - - 9|9 RIKEN cDNA 2010001M07 gene ncRNA 110997 Adh1-ps2 Adh1-ps1 - - alcohol dehydrogenase 1 (class I), pseudogene 2 pseudo 28283 D10Jhu53 - - - DNA segment, Chr 10, Johns Hopkins University 53 unknown 16297 In(6)47Rk In47Rk - - inversion, Chr 6, Roderick 47 other 666382 Vmn2r-ps80 EG666382|Gm8073 - 7|7 D3 vomeronasal 2, receptor, pseudogene 80 pseudo 105246279 Gm41583 - - 17|17 predicted gene, 41583 ncRNA 239546 Mm.183650 NM_172817 ENSMUSG00000054967 Zfp647 6030449J21|Es492|Znf250 - 15|15 D3 zinc finger protein 647 protein-coding 100416207 Gm17966 - - 1|1 H4 ribosomal protein S2 pseudogene pseudo 21661 tda1 Tda-1 - - testis-determining autosomal 1 unknown 19281 Mm.235807 NM_021464 ENSMUSG00000053141 Ptprt R-PTP-T|RPTP-rfo|RPTP-rho|RPTPmam4|RPTPrho|mKIAA0283|mRPTPrho - 2 H2|2 81.91 cM protein tyrosine phosphatase, receptor type, T protein-coding 111564 Xmv21 Xmv-21 - - xenotropic murine leukemia virus 21 other 77549 Mm.102211 9330109K16Rik - - 8|8 RIKEN cDNA 9330109K16 gene protein-coding 98120 C81452 - - - expressed sequence C81452 unknown 100316683 NR_035442 ENSMUSG00000084651 Mir1904 Mirn1904|mmu-mir-1904 - 13 D2.1|13 60.84 cM microRNA 1904 ncRNA 16846 Mm.277072 NM_008493 ENSMUSG00000059201 Lep ob|obese - 6 A3.3|6 12.3 cM leptin protein-coding 102633389 XR_387938 Gm31224 Gm45811 - 8 C5|8 predicted gene, 31224 ncRNA 102638487 XR_375721 Gm35039 - - 3 E1|3 predicted gene, 35039 ncRNA 93752 Hspe1-ps5 Cpn10-rs6 - 2|2 C3 heat shock protein 1 (chaperonin 10), pseudogene 5 pseudo 622404 Mm.289109 NM_001037913 ENSMUSG00000028461 Ccdc107 - - 4|4 A5 coiled-coil domain containing 107 protein-coding 20965 Mm.441431 NM_013681 ENSMUSG00000009394 Syn2 2900074L19Rik|AI836018|AI841723 - 6 E3|6 53.2 cM synapsin II protein-coding 104209 Ink76 in76 - - intestinal kinase 76 unknown 98403 Mm.289103 NM_133817 ENSMUSG00000042197 Zfp451 4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702 - 1 B|1 12.81 cM zinc finger protein 451 protein-coding 399566 Mm.440140 NM_201646 ENSMUSG00000002803 Btbd6 - - 12|12 F1 BTB (POZ) domain containing 6 protein-coding 59038 Mm.24673 NM_021534 ENSMUSG00000000876 Pxmp4 3010018P03Rik|Pmp24 - 2|2 H1 peroxisomal membrane protein 4 protein-coding 100124360 Traj29 Gm16819 - 14|14 C2 T cell receptor alpha joining 29 other 97977 C81508 - - - expressed sequence C81508 unknown 257813 Olfr1005-ps1 GA_x5J8B7W531T-1577060-1577325 - 2|2 D olfactory receptor 1005, pseudogene 1 pseudo 100885843 NR_049204 ENSMUSG00000095154 Mir344i Gm26031|mir-344i|mmu-mir-344i - 7|7 C microRNA 344i ncRNA 84544 Mm.29204 NM_032465 ENSMUSG00000022657 Cd96 1700109I12Rik|Tactile - 16|16 B5 CD96 antigen protein-coding 433224 Mm.153111 NR_002891 ENSMUSG00000112693 Gm5512 EG433224 - 19 A|19 required for meiotic nuclear division 1 pseudogene pseudo 665094 Gm7488 EG665094 - 3 A3|3 nudix (nucleoside diphosphate linked moiety X)-type motif 21 pseudogene pseudo 67765 Mm.445272 NR_015548 ENSMUSG00000097471 5830432E09Rik - - 7|7 F3 RIKEN cDNA 5830432E09 gene ncRNA 217218 Mm.390381 NM_001098836 ENSMUSG00000059995 Atxn7l3 E030022H21Rik - 11|11 D ataxin 7-like 3 protein-coding 80290 Mm.270003 NM_030258 ENSMUSG00000044197 Gpr146 BC003323|D830046C22Rik|PGR8 - 5|5 G2 G protein-coupled receptor 146 protein-coding 110900 Atp1b3-rs - - - ATPase, Na+/K+ transporting, beta 3 polypeptide, related sequence protein-coding 228960 Mm.277977 NM_172675 ENSMUSG00000027522 Stx16 4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16 - 2|2 H4 syntaxin 16 protein-coding 791340 Mm.483610 Gm10006 - - - predicted gene 10006 unknown 328482 Trav9d-2 EG328482|Gm5090 - 14 C2|14 T cell receptor alpha variable 9D-2 other 258068 Mm.363074 NM_001011821 ENSMUSG00000095401 Olfr804 MOR110-7 - 10|10 D3 olfactory receptor 804 protein-coding 100217365 E130208F15Rik - - - RIKEN cDNA E130208F15 gene protein-coding 12925 Mm.272368 NM_007763 ENSMUSG00000006360 Crip1 CRHP|CRP1|Crip - 12 F1|12 61.59 cM cysteine-rich protein 1 (intestinal) protein-coding 100035843 Splwt1 - - - spleen weight 1 unknown 27645 D0Hgu11 - - - DNA segment, Human Genetics Unit 11 unknown 259072 Mm.377823 NM_147069 ENSMUSG00000048425 Olfr686 MOR35-1 - 7|7 E3 olfactory receptor 686 protein-coding 105245722 Gm41128 - - 14|14 predicted gene, 41128 ncRNA 12297 Mm.3544 NM_007581 ENSMUSG00000003352 Cacnb3 Beta3|CAB3|Ca(v)beta3|Cchb3 - 15 F1|15 54.64 cM calcium channel, voltage-dependent, beta 3 subunit protein-coding 100041117 Gm20860 - - Y|Y predicted gene, 20860 protein-coding 14573 Mm.4679 NM_010275 ENSMUSG00000022144 Gdnf AI385739|ATF - 15|15 A1 glial cell line derived neurotrophic factor protein-coding 61219 D1Mit212 - - 1 18.55 cM DNA segment, Chr 1, Massachusetts Institute of Technology 212 unknown 100504462 Mm.444287 1700007J24Rik - - 2|2 RIKEN cDNA 1700007J24 gene unknown 100820711 Mm.425630 D430050E20Rik - - 10|10 RIKEN cDNA D430050E20 gene unknown 213053 Mm.270647 NM_144808 ENSMUSG00000022094 Slc39a14 FAD-123|ZIP-14|Zip14|fad123 - 14|14 D2 solute carrier family 39 (zinc transporter), member 14 protein-coding 17274 Mm.162811 NM_023126 ENSMUSG00000003037 Rab8a AA409338|Mel - 8 B3.3|8 34.84 cM RAB8A, member RAS oncogene family protein-coding 780932 Ighv1-55 Gm16792 - 12|12 F2 immunoglobulin heavy variable 1-55 other 101055721 LOC101055721 - - 11 B1.1 40S ribosomal protein S2 pseudogene pseudo 676191 Gm11434 - - 11|11 C COMM domain containing 9 pseudogene pseudo 492931 Tshp5 QTL-TSH4.1 - 4 33.96 cM tooth shape 5 unknown 72203 Mm.339566 NR_037964 2610507I01Rik 5033414D05Rik - 11|11 B1.3 RIKEN cDNA 2610507I01 gene ncRNA 102638141 XR_380570 Gm34776 - - 10 B5.3|10 predicted gene, 34776 ncRNA 404243 Mrgpra10 MrgA10 - - MAS-related GPR, member A10 protein-coding 217328 Mm.308940 XR_001780366 ENSMUSG00000034427 Myo15b E330039G21Rik|Gm688|Gm886|mKIAA1783 - 11|11 E2 myosin XVB pseudo 100303734 Mm.471748 Gm9817 - - 13|13 predicted gene 9817 unknown 102639645 Mm.483775 NM_001013752 Gm534 - - 14|14 C1 predicted gene 534 unknown 105245781 XR_874706 Gm41175 - - 14 D1|14 predicted gene, 41175 ncRNA 21379 Mm.247761 NM_134011 ENSMUSG00000000384 Tbrg4 2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948 - 11|11 A1 transforming growth factor beta regulated gene 4 protein-coding 100041691 Gm15442 - - 3 E3|3 zinc finger protein 114 pseudogene pseudo 100417792 Gm18829 - - 1|1 C2 arginyl-tRNA synthetase 2, mitochondrial pseudogene pseudo 21632 Mm.210785 Tcrg-V1 Gm16602|TRGV1 - 13 A2|13 T cell receptor gamma, variable 1 other 100042071 Gm15432 EG620985 - X|X A3.1 uncharacterized protein C4orf3 homolog pseudogene pseudo 102636505 XR_377195 Gm33552 - - 5 G2|5 predicted gene, 33552 ncRNA 102640950 Gm28890 - - Y|Y predicted gene 28890 protein-coding 78085 Mm.243832 4930471C06Rik - - 4|4 RIKEN cDNA 4930471C06 gene protein-coding 102632768 Gm30756 - - 1 A5|1 predicted gene, 30756 pseudo 102635302 XR_384401 Gm32677 - - 15 F1|15 predicted gene, 32677 ncRNA 52409 D5Ertd798e - - 5 25.38 cM DNA segment, Chr 5, ERATO Doi 798, expressed unknown 320472 Mm.341988 NM_177167 ENSMUSG00000046442 Ppm1e AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072 - 11|11 C protein phosphatase 1E (PP2C domain containing) protein-coding 102636563 Mm.458645 XR_871346 LOC102636563 - - 9 F3 uncharacterized LOC102636563 ncRNA 105245830 XR_874874 Gm41220 - - 14 E1|14 predicted gene, 41220 ncRNA 13460 Dp(16)8H Dp8H - - duplication, Chr 16, Harwell 8 other 12323 Mm.439733 NM_007595 ENSMUSG00000057897 Camk2b CaMKII - 11 A1|11 3.89 cM calcium/calmodulin-dependent protein kinase II, beta protein-coding 102634534 XR_869186 Gm32091 - - 6 C3|6 predicted gene, 32091 ncRNA 72580 Mm.248081 NM_028287 ENSMUSG00000039531 Zufsp 2700019D07Rik - 10|10 B1 zinc finger with UFM1-specific peptidase domain protein-coding 111900 Pltr4 - - - polytropic long terminal repeat containing proviral locus 4 other 61599 D9Mit271 - - 9 46.78 cM DNA segment, Chr 9, Massachusetts Institute of Technology 271 unknown 108367 Mtv49 Mtv-45|Mtv-49 - - mammary tumor virus locus 49 other 100504377 Mm.446631 NR_045640 Gm20199 - - 9 B|9 32.02 cM predicted gene, 20199 ncRNA 68420 Mm.275554 NM_026718 ENSMUSG00000041870 Ankrd13a 1100001D10Rik|ANKRD13|AU046136 - 5|5 F ankyrin repeat domain 13a protein-coding 17255 mea - - - meander tail unknown 105242967 XR_882198 Gm39029 - - 7 C|7 predicted gene, 39029 ncRNA 257941 Mm.376116 NM_001011777 ENSMUSG00000075202 Olfr1042 MOR185-10 - 2|2 D olfactory receptor 1042 protein-coding 71303 Mm.12654 4933437G19Rik - - 5|5 RIKEN cDNA 4933437G19 gene protein-coding 100041144 Gm13105 - - 4|4 E1 predicted gene 13105 protein-coding 102633398 XR_379779 Gm31233 - - 9 F1|9 predicted gene, 31233 ncRNA 100038419 Mm.166919 E330027M22Rik - - - RIKEN cDNA gene, E330027M22Rik unknown 102636302 XR_379627 Gm33407 - - 9 D|9 predicted gene, 33407 ncRNA 108167307 LOC108167307 - - 9 F3 Tgfbr2 Hedgehog-responsive enhancer biological-region 102465589 NR_105941 ENSMUSG00000098499 Mir6975 Gm27693|mmu-mir-6975 - 17|17 B1 microRNA 6975 ncRNA 22143 Mm.392113 NM_011654 ENSMUSG00000023004 Tuba1b Tuba2 - 15|15 F1 tubulin, alpha 1B protein-coding 668548 XR_869917 Gm9234 EG668548 - 7|7 F2 predicted pseudogene 9234 pseudo 100043515 Mm.184028 XR_874650 Gm4491 - - 14 C3|14 predicted gene 4491 protein-coding 100035358 Skmw13 - - 5 50.64 cM skeletal muscle weight 13 unknown 105245141 XR_871618 Gm40634 - - 10 B2|10 predicted gene, 40634 ncRNA 99899 Mm.30756 NM_133871 ENSMUSG00000028037 Ifi44 A430056A10Rik|AW261460|MTAP44|p44 - 3|3 H3 interferon-induced protein 44 protein-coding 100038804 Mm.451550 NM_001122657 Itpr3os 1700062I23Rik|Gm16173 - 17 A3.3|17 inositol 1,4,5-triphosphate receptor 3, opposite strand unknown 105246281 XR_876838 Gm41585 - - 17 C|17 predicted gene, 41585 ncRNA 228778 Mm.70959 NM_177656 ENSMUSG00000032680 6820408C15Rik - - 2|2 G3 RIKEN cDNA 6820408C15 gene protein-coding 100035673 Nilac6 - - - nicotine induced locomotor activity 6 unknown 108168442 XR_001782765 Gm46675 - - X A1.1|X predicted gene, 46675 ncRNA 85046 D6Mit85 - - 6 9.73 cM DNA segment, Chr 6, Massachusetts Institute of Technology 85 unknown 108168415 Gm46654 - - 19 C1|19 predicted gene, 46654 pseudo 319724 B230327D02Rik - - 12|12 RIKEN cDNA B230327D02 gene protein-coding 434035 Mm.305094 LOC434035 - - 6|6 C1 immunoglobulin kappa-chain VK-1 other 105245351 XR_872351 Gm40823 - - 11 A4|11 predicted gene, 40823 ncRNA 17523 Mm.4668 NM_010824 ENSMUSG00000009350 Mpo mKIAA4033 - 11 52.22 cM|11 C myeloperoxidase protein-coding 433408 Mm.386941 NR_033225 Gm13375 - - 2|2 A3 predicted gene 13375 ncRNA 12537 Mm.267410 NM_007661 ENSMUSG00000029062 Cdk11b AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58 - 4 E2|4 86.73 cM cyclin-dependent kinase 11B protein-coding 668089 Gm8970 EG668089 - 8|8 D3 La ribonucleoprotein domain family, member 1B pseudogene pseudo 51791 Mm.1426 NM_016758 ENSMUSG00000052087 Rgs14 RPIP1 - 13 B1|13 29.8 cM regulator of G-protein signaling 14 protein-coding 66497 Mm.425976 NM_025599 ENSMUSG00000022748 Cmss1 1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629 - 16|16 C1.1 cms small ribosomal subunit 1 protein-coding 669120 Gm14986 - - X|X E3 desmoglein 1 alpha pseudogene pseudo 100417903 Gm12393 - - 4|4 A3 predicted gene 12393 pseudo 72920 2900021C02Rik - - 12|12 RIKEN cDNA 2900021C02 gene protein-coding 102634589 XR_379366 Gm32131 - - 9 A5.3|9 predicted gene, 32131 ncRNA 666048 Mm.331779 NM_001085549 ENSMUSG00000070867 Trabd2b Gm12824|Hkat - 4 D1|4 TraB domain containing 2B protein-coding 109377 Lbw4 - - - lupus NZB x NZW 4 unknown 105246676 XR_878430 Gm41927 - - 1 E2.1|1 predicted gene, 41927 ncRNA 108167856 Gm46256 - - 11 B1.1|11 predicted gene, 46256 pseudo 105246516 XR_877624 Gm41797 - - 18 E3|18 predicted gene, 41797 ncRNA 244239 Gm498 - - 7|7 F5 predicted gene 498 protein-coding 74273 Mm.261201 1700064E03Rik - - 11|11 uncharacterized LOC74273 unknown 17191 Mm.322 NM_010773 ENSMUSG00000024513 Mbd2 MBD2a - 18 E2|18 44.54 cM methyl-CpG binding domain protein 2 protein-coding 110416 Tcrd-V5T - - - T cell receptor delta, variable 5T other 100124393 Traj9 Gm16653 - 14|14 C2 T cell receptor alpha joining 9 other 53293 433B7T7 - - - DNA segment, 433B7T7 (Roswell Park) unknown 170952 Mm.217019 NM_133364 ENSMUSG00000041669 Prima1 B230212M13Rik|BB120497|PRiMA - 12|12 E proline rich membrane anchor 1 protein-coding 209032 Mm.101389 NM_172467 ENSMUSG00000047749 Zc3hav1l B130055L09Rik|E430016P22Rik - 6|6 B1 zinc finger CCCH-type, antiviral 1-like protein-coding 29866 Mm.46268 NM_013878 ENSMUSG00000024857 Cabp2 - - 19|19 A calcium binding protein 2 protein-coding 100039532 Gm10029 - - 13|13 A1 predicted pseudogene 10029 pseudo 100034684 Mm.383561 NM_001082546 ENSMUSG00000071561 BC100530 - - 16|16 B3 cDNA sequence BC100530 protein-coding 100579148 Gm17409 - - 2 33.05 cM predicted gene, 17409 protein-coding 207592 Mm.205263 NM_172443 ENSMUSG00000039976 Tbc1d16 B930087K01|BC026530|Tcd1d16 - 11|11 E2 TBC1 domain family, member 16 protein-coding 101402 AW743318 - - - expressed sequence AW743318 unknown 108351 Emv9 Emv-9 - - endogenous ecotropic MuLV 9 other 102635762 Gm28377 - - Y|Y predicted gene 28377 protein-coding 12420 cby - - - chubby unknown 104242 Mch - - - modifier of chinchilla unknown 102238518 LOC102238518 - - 5 F polymerase (RNA) II (DNA directed) polypeptide K pseudogene pseudo 67109 Mm.3254 NM_001013012 ENSMUSG00000046792 Zfp787 2210018M03Rik|Znf787 - 7|7 A1 zinc finger protein 787 protein-coding 320316 Mm.229180 9330164J24Rik - - 17|17 RIKEN cDNA 9330164J24 gene protein-coding 99996 Mm.429535 AA416453 - - - expressed sequence AA416453 unknown 100034923 Tesq3 - - - testis weight QTL 3 unknown 100034772 Tshp10 QTL-TSH11.2 - 11 42.94 cM tooth shape 10 unknown 102642162 Mm.115515 XR_867333 ENSMUSG00000103587 Gm38326 - - 3 D|3 predicted gene, 38326 ncRNA 107966128 Rer - - 6 E3 rhodopsin enhancer region biological-region 96922 C86010 - - - expressed sequence C86010 unknown 404555 AL118333 - - - expressed sequence AL118333 unknown 18845 Mm.2251 NM_008882 ENSMUSG00000026640 Plxna2 2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463 - 1|1 H6 plexin A2 protein-coding 242726 Mm.271661 NM_153106 ENSMUSG00000040935 Padi6 Pad6|Padi5|ePAD - 4 D3|4 72.26 cM peptidyl arginine deiminase, type VI protein-coding 668526 Mm.326965 NM_001281524 ENSMUSG00000098094 Scgb2b17 Abpbg17|EG668526|Gm9223 - 7|7 B1 secretoglobin, family 2B, member 17 protein-coding 105242659 Gm38812 - - 6|6 predicted gene, 38812 ncRNA 108169140 XR_001785236 Gm44764 - - 6 B2.3|6 predicted gene 44764 ncRNA 606539 Gm6702 EG626732|Ppia-ps5_1584.1 - 7 E3|7 57.21 cM peptidylprolyl isomerase A pseudogene 5_1584.1 pseudo 666259 Gm15573 EG666259 - 6 B3|6 predicted gene 15573 pseudo 271521 Gm1859 - - 18|18 D1 Rac GTPase-activating protein 1 pseudogene pseudo 20713 Mm.41560 NM_009250 ENSMUSG00000027834 Serpini1 AI837402|Ns|PI-12|PI12|Spi17 - 3|3 E3 serine (or cysteine) peptidase inhibitor, clade I, member 1 protein-coding 546546 Mm.390522 NM_001034870 Serpina3h 6C28|Spi2 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 3H pseudo 102640809 XM_017316282 Gm36789 - - 14 C3|14 predicted gene, 36789 protein-coding 105243948 XR_865492 Gm39656 - - 1 C3|1 predicted gene, 39656 ncRNA 97431 T25611 - - - expressed sequence T25611 unknown 72107 Mm.486550 NM_183089 ENSMUSG00000022422 Dscc1 2010006I05Rik|2600005O03Rik|Dcc1 - 15|15 D1 DNA replication and sister chromatid cohesion 1 protein-coding 102635693 XR_873498 Gm32965 - - 13 B1|13 predicted gene, 32965 ncRNA 320495 Mm.331674 NM_001033391 ENSMUSG00000064065 Ipcef1 A130090K04Rik - 10|10 A1 interaction protein for cytohesin exchange factors 1 protein-coding 73259 Mm.443299 NM_028483 ENSMUSG00000053194 Cib4 1700041E20Rik - 5|5 B1 calcium and integrin binding family member 4 protein-coding 108168322 XR_001782147 Gm46579 - - 17 C|17 predicted gene, 46579 ncRNA 108168831 LOC108168831 - - 2 C3 60S ribosomal protein L36a-like pseudo 105971 AU021833 - - - expressed sequence AU021833 protein-coding 107197955 LOC107197955 - - - origin of replication near adenosine deaminase biological-region 29837 Del(11)16Brd - - - deletion, Chr 11, Bradley 16 other 102639205 XR_383323 Gm35566 - - 14 B|14 predicted gene, 35566 ncRNA 193452 Mm.187446 NM_183014 ENSMUSG00000006720 Zfp184 4930500C15Rik - 13|13 A3.1 zinc finger protein 184 (Kruppel-like) protein-coding 404253 Mrgprb9-ps MrgB9 - 7|7 B4 MAS-related GPR, member B9, pseudogene pseudo 16136 Mm.184441 NM_001190325 ENSMUSG00000075370 Igll1 BB139905|Igl-5|Igll|Lambda5 - 16 A3|16 10.45 cM immunoglobulin lambda-like polypeptide 1 protein-coding 102636019 XR_379386 Gm33210 - - 9 A5.3|9 predicted gene, 33210 ncRNA 102638104 NR_151608 Gm34746 - - 4 D2.1|4 predicted gene, 34746 ncRNA 22690 Mm.127014 NM_175247 ENSMUSG00000062861 Zfp28 2810438M17Rik|Zfp-28|mkr-5 - 7|7 A1 zinc finger protein 28 protein-coding 66457 Mm.402557 NR_027831 2810002D19Rik - - 2|2 E1 RIKEN cDNA 2810002D19 gene ncRNA 404464 Olfr1067-ps1 GA_x5J8B7TSKU6-615-137|GA_x5J8B7W4CQV-140710-140907|GA_x6K02T2Q125-47934343-47933862 - 2|2 olfactory receptor 1067, pseudogene 1 pseudo 11666 Mm.365 NM_007435 ENSMUSG00000031378 Abcd1 ALDP|Ald|Aldgh - X A7.3|X 37.39 cM ATP-binding cassette, sub-family D (ALD), member 1 protein-coding 85150 D1Mit393 - - 1 55.8 cM DNA segment, Chr 1, Massachusetts Institute of Technology 393 unknown 100509 Mm.118846 AA409244 - - - expressed sequence AA409244 unknown 320365 Mm.216590 NM_172887 ENSMUSG00000056602 Fry 13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143 - 5 G3|5 89.36 cM FRY microtubule binding protein protein-coding 101148 Mm.354863 NM_175312 ENSMUSG00000042742 Bmt2 AI666701|B630005N14Rik - 6|6 A1 base methyltransferase of 25S rRNA 2 protein-coding 102637485 XR_378365 Gm34280 - - 7 E1|7 predicted gene, 34280 protein-coding 61655 D7Mit281 - - 7 58.74 cM DNA segment, Chr 7, Massachusetts Institute of Technology 281 unknown 387180 NR_029571 ENSMUSG00000065464 Mir185 Mirn185|mir-185|mmu-mir-185 - 16|16 A3 microRNA 185 ncRNA 71054 Mm.444807 NR_045505 ENSMUSG00000087487 Ppp2r2cos 4933401P06Rik - 5|5 B3 protein phosphatase 2, regulatory subunit B, gamma, opposite strand ncRNA 628027 Mm.333124 Igkv1-133 EG628027|Gm6827|Igk-Vk2(70/1) - 6|6 C1 immunoglobulin kappa variable 1-133 other 629678 Mm.390721 NM_001037935 ENSMUSG00000067973 Gm6994 EG629678 - 14 D3|14 predicted gene 6994 ncRNA 100503318 Gm15853 - - 1|1 73.74 cM predicted gene 15853 ncRNA 52482 D10Ggc3e - - - DNA segment, Chr 10, G. Consalez 3, expressed unknown 102466635 NR_105787 ENSMUSG00000099158 Mir6368 Gm27800|mmu-mir-6368 - 13|13 A3.1 microRNA 6368 ncRNA 630994 Mm.455176 NM_001270426 ENSMUSG00000043472 Lce3d Gm9782 - 3|3 F1 late cornified envelope 3D protein-coding 15277 Mm.255848 NM_013820 ENSMUSG00000000628 Hk2 AI642394|HKII - 6 C3|6 35.94 cM hexokinase 2 protein-coding 108167364 XR_001778633 Gm45708 - - 8 C5|8 predicted gene 45708 ncRNA 105246578 XR_877862 Gm41849 - - 19 C3|19 predicted gene, 41849 ncRNA 70957 Mm.399049 NR_038162 ENSMUSG00000086657 Stamos 4921530L18Rik - 2|2 A1 signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand ncRNA 675960 Gm9658 - - 15 B3.2|15 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100417446 Gm15172 - - X|X F4 aldolase B, fructose-bisphosphate pseudogene pseudo 102465785 NR_106152 ENSMUSG00000106400 Mir216c mmu-mir-216c - 11|11 A3.3 microRNA 216c ncRNA 13498 Mm.333380 NM_007881 ENSMUSG00000004263 Atn1 Atr1|Drpla|atrophin-1 - 6 F2|6 59.17 cM atrophin 1 protein-coding 100035658 Cmn2 - - 10 39.72 cM cardiac modifier of nmd 2 unknown 622082 Gm6284 EG622082 - 8|8 A4 bromodomain adjacent to zinc finger domain, 2A pseudogene pseudo 94219 Mm.306903 NM_033569 ENSMUSG00000064105 Cnnm2 AU015877|AW048635|Acdp2|Clp2 - 19 C3|19 38.97 cM cyclin M2 protein-coding 97783 C76336 - - - expressed sequence C76336 protein-coding 625823 Mm.479992 NM_001166728 ENSMUSG00000091013 Vmn1r1 EG625823|Gm6628 - 1|1 H5 vomeronasal 1 receptor 1 protein-coding 100885829 NR_049190 ENSMUSG00000093408 Mir5617 Gm25192|mir-5617|mmu-mir-5617 - X|X A1.3 microRNA 5617 ncRNA 269346 Mm.29510 NM_172980 ENSMUSG00000027219 Slc28a2 2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT - 2|2 E5 solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 protein-coding 272396 Mm.35127 NM_172310 ENSMUSG00000030515 Tarsl2 A530046H20Rik - 7|7 C threonyl-tRNA synthetase-like 2 protein-coding 226791 Mm.257116 NM_146106 ENSMUSG00000039246 Lyplal1 BC027340|Q96AVO - 1|1 H5 lysophospholipase-like 1 protein-coding 382747 Gm5195 EG382747 - 13|13 A3.3 methyltransferase like 11A pseudogene pseudo 105244417 XR_879948 Gm40027 - - 11 B3|11 predicted gene, 40027 ncRNA 320506 Mm.259886 NM_177178 ENSMUSG00000039704 Lmbrd2 9930036E21Rik - 15|15 A1 LMBR1 domain containing 2 protein-coding 545486 Mm.45285 NM_001080971 ENSMUSG00000016255 Tubb1 2810484G07Rik|M(beta)1 - 2|2 H4 tubulin, beta 1 class VI protein-coding 105246916 XR_880429 Gm42112 - - 5 E2|5 predicted gene, 42112 ncRNA 97743 C85143 - - - expressed sequence C85143 protein-coding 100504146 Gm14390 - - 2|2 H4 zinc finger protein 937 pseudogene pseudo 102633448 XR_391865 ENSMUSG00000101560 Gm28127 - - Y A2|Y predicted gene 28127 ncRNA 107861 Shbdp1 s2 - - src homology 3 binding domain protein 1 protein-coding 105242784 XR_001785375 Gm38905 - - 6 F3|6 predicted gene, 38905 ncRNA 52721 D18Ertd734e - - 18 18.56 cM DNA segment, Chr 18, ERATO Doi 734, expressed unknown 100043377 Gm16476 EG668621 - 12|12 A1.2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 pseudogene pseudo 104859 Mm.35583 NM_175336 ENSMUSG00000021275 Tecpr2 4930573I19Rik|AI604920|mKIAA0297 - 12|12 F1 tectonin beta-propeller repeat containing 2 protein-coding 65086 Mm.155520 NM_022983 ENSMUSG00000036832 Lpar3 Edg7|lpA3 - 3 H2|3 71.03 cM lysophosphatidic acid receptor 3 protein-coding 100417046 Gm18384 - - 3|3 G1 ribonucleotide reductase M2 pseudogene pseudo 74927 Mm.87326 NM_183108 ENSMUSG00000049761 Pmis2 1700071L20Rik|4930479M11Rik - 7|7 B1 Pmis2, sperm specific protein ncRNA 109605 Es13 Es-13|Es-21|Es21 - - esterase 13 protein-coding 64246 Snord116l3 Gm24742|Pwcr1l3 - - small nucleolar RNA, C/D box 116-like 3 snoRNA 19039 Mm.3152 NM_011150 ENSMUSG00000033880 Lgals3bp 90K|CyCAP|MAC-2BP|Ppicap|Tango10b - 11|11 E2 lectin, galactoside-binding, soluble, 3 binding protein protein-coding 665302 Gm7577 EG665302 - 15|15 D1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 56410 Mm.97163 NM_019820 ENSMUSG00000040380 Cbln3 - - 14 C3|14 28.19 cM cerebellin 3 precursor protein protein-coding 100035625 Bntq5 - - - bone traits QTL 5 unknown 101602 Mm.490357 NM_178901 ENSMUSG00000045165 AI467606 - - 7|7 F3 expressed sequence AI467606 protein-coding 624096 Gm6470 EG624096 - X|X F2 predicted gene 6470 pseudo 100036200 Paam1 - - - progression of autoimmune arthritis in MRL mice 1 unknown 110825 Gpcr19-rs2 - - - G-protein coupled receptor 19, related sequence 2 protein-coding 74898 4930456K20Rik - - 10|10 RIKEN cDNA 4930456K20 gene protein-coding 114166 Cons6 - - - consumption-saccharin intake 6 unknown 68159 Mm.386793 NM_026588 ENSMUSG00000047854 Stx19 A030009B12Rik - 16|16 C1.3 syntaxin 19 protein-coding 113845 Mm.425336 NM_053218 ENSMUSG00000057592 Vmn1r48 V1ra3 - 6|6 D1 vomeronasal 1 receptor 48 protein-coding 61197 D1Mit123 - - 1 17.67 cM DNA segment, Chr 1, Massachusetts Institute of Technology 123 unknown 102636246 XR_387544 Gm33365 - - 3 A1|3 predicted gene, 33365 ncRNA 66365 Mm.21173 NM_025515 ENSMUSG00000030613 Ccdc90b 2310015N07Rik|C86558 - 7|7 E1 coiled-coil domain containing 90B protein-coding 102465778 NR_106141 ENSMUSG00000105379 Mir1191b mmu-mir-1191b - 10|10 C1 microRNA 1191b ncRNA 14862 Mm.37199 NM_010358 ENSMUSG00000058135 Gstm1 Gstb-1|Gstb1 - 3|3 F2.3 glutathione S-transferase, mu 1 protein-coding 433912 Rpl7-ps7 EG433912|Gm5557 - 5|5 E1 ribosomal protein L7, pseudogene 7 pseudo 100038503 Gm10484 - - - predicted gene 10484 protein-coding 77810 Mm.483143 NR_015618 A930015D03Rik - - 17 B1|17 RIKEN cDNA A930015D03 gene ncRNA 102638965 XR_380024 Gm35398 - - 9 F4|9 predicted gene, 35398 ncRNA 60980 D17Mit2 - - 17 50.97 cM DNA segment, Chr 17, Massachusetts Institute of Technology 2 unknown 108284 Ppp1cc-ps1 - - - protein phosphatase 1, catalytic subunit, gamma isoform, pseudogene 1 pseudo 100041863 Gm3551 - - 1|1 E2.3 predicted gene 3551 pseudo 19769 Mm.4009 NM_009069 ENSMUSG00000028057 Rit1 RIBB|ROC1|Rit - 3|3 F1 Ras-like without CAAX 1 protein-coding 111883 Iap5ra2 - - - intracisternal A-type particle, U5 region, SINE repeat a-2 other 70720 Mm.445696 NR_028126 6330407A03Rik - - 4|4 A1 RIKEN cDNA 6330407A03 gene ncRNA 62272 D19Mit25 - - 19 45.05 cM DNA segment, Chr 19, Massachusetts Institute of Technology 25 unknown 667881 Mm.426557 Igkv6-14 Igk-V19-14 - 6|6 C1 immunoglobulin kappa variable 6-14 other 17972 Mm.2068 NM_008677 ENSMUSG00000071715 Ncf4 AI451400|p40phox - 15 E1|15 37.1 cM neutrophil cytosolic factor 4 protein-coding 111463 H2-T H-2T - - histocompatibility 2, T region other 102635633 Mm.383511 NR_136913 ENSMUSG00000105508 Gm32921 - - 5 E5|5 predicted gene, 32921 ncRNA 24074 Mm.236009 NM_175770 ENSMUSG00000051316 Taf7 55kDa|AI607308|BB007175|TAFII55|Taf2f - 18|18 B3 TATA-box binding protein associated factor 7 protein-coding 239463 Mm.221241 NM_173862 ENSMUSG00000051225 Fam83a - - 15|15 D1 family with sequence similarity 83, member A protein-coding 102467426 n-TCgca48 n-Tc48 - 6 B2.3|6 nuclear encoded tRNA cysteine 48 (anticodon GCA) tRNA 544990 Mm.360540 NM_001270806 ENSMUSG00000079409 Gm5795 - - 14 A1|14 predicted gene 5795 protein-coding 12550 Mm.35605 NM_009864 ENSMUSG00000000303 Cdh1 AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um - 8 D3|8 53.18 cM cadherin 1 protein-coding 62860 D11Mit297 - - 11 41.13 cM DNA segment, Chr 11, Massachusetts Institute of Technology 297 unknown 74464 Mm.218946 NM_001029912 ENSMUSG00000033948 Zswim5 4933426E21Rik|AI503093|mKIAA1511 - 4|4 D1 zinc finger SWIM-type containing 5 protein-coding 100042031 Gm3633 - - 14 B|14 predicted gene 3633 protein-coding 71947 Mm.23168 NM_028014 ENSMUSG00000020747 Tmem94 2310067B10Rik|Kiaa0195|mKIAA0195 - 11|11 E2 transmembrane protein 94 protein-coding 22275 Mm.46484 NM_009478 ENSMUSG00000028684 Urod AI323803|UPD|Uro-d - 4 D1|4 53.41 cM uroporphyrinogen decarboxylase protein-coding 102640659 XR_377620 Gm36673 - - 6 B2.3|6 predicted gene, 36673 ncRNA 105244001 XR_865718 Gm39696 - - 1 H2.3|1 predicted gene, 39696 ncRNA 73391 Mm.482207 1700060J05Rik - - 4|4 RIKEN cDNA 1700060J05 gene ncRNA 140476 Mm.467475 NM_080459 ENSMUSG00000033498 Strc DFNB16 - 2|2 E5 stereocilin protein-coding 62283 D19Mit47 - - 19 22.62 cM DNA segment, Chr 19, Massachusetts Institute of Technology 47 unknown 74409 Mm.87331 NM_028920 ENSMUSG00000029679 Hyal6 4932701A20Rik|Hyal-ps1|Hyalp1 - 6|6 A3.1 hyaluronoglucosaminidase 6 protein-coding 112394 Eae11 - - 16 40.3 cM experimental allergic encephalomyelitis susceptibility 11 unknown 102635283 XR_872079 Gm32663 - - 10 D2|10 predicted gene, 32663 ncRNA 330222 Mm.151931 NM_177879 ENSMUSG00000039683 Sdk1 5330440E10|6720466O15Rik - 5|5 G2 sidekick cell adhesion molecule 1 protein-coding 100125410 Cyp2d32-ps - - 15|15 E1 cytochrome P450, family 2, subfamily d, polypeptide 32, pseudogene pseudo 624224 Mm.475609 NM_001163317 ENSMUSG00000049530 Clrn2 EG624224 - 5|5 B3 clarin 2 protein-coding 76830 2900022B07Rik - - 2|2 RIKEN cDNA 2900022B07 gene protein-coding 68842 Mm.449307 NM_054040 ENSMUSG00000034377 Tulp4 1110057P05Rik|2210038L17Rik|Tusp - 17 A1|17 3.72 cM tubby like protein 4 protein-coding 71817 Mm.88349 NM_027935 ENSMUSG00000028822 Tmem50a 3200001F09Rik|CAM|Smp1 - 4 D3|4 67.14 cM transmembrane protein 50A protein-coding 100504262 Mm.438066 NR_040287 A730020E08Rik - - 6|6 B3 RIKEN cDNA A730020E08 gene ncRNA 665469 Gm7647 - - 5|5 E3 predicted gene 7647 protein-coding 100035335 Elcs2 - - - ENU induced lung carcinoma susceptibility 2 unknown 74199 Mm.292983 NM_028813 ENSMUSG00000024076 Vit 1700052E02Rik|1700110E08Rik|2810429K11Rik|AKH|akhirin - 17|17 E3 vitrin protein-coding 66701 Mm.29694 NM_025716 ENSMUSG00000051346 Spryd4 4633402N23Rik|AA114801 - 10|10 D3 SPRY domain containing 4 protein-coding 192656 Mm.112765 NM_138952 ENSMUSG00000041135 Ripk2 2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2 - 4 A2|4 6.7 cM receptor (TNFRSF)-interacting serine-threonine kinase 2 protein-coding 111386 Rnr4 - - - ribosomal RNA, Chr 4 cluster other 245663 Gm4996 EG245663 - X|X F2 prohibitin pseudogene pseudo 60998 D2Mit267 - - 2 12.34 cM DNA segment, Chr 2, Massachusetts Institute of Technology 267 unknown 232813 Mm.44666 NM_172737 ENSMUSG00000053550 Shisa7 ckamp59 - 7|7 A1 shisa family member 7 protein-coding 53673 D6Nds1 D0Nds4 - - DNA segment, Chr 6, Nuffield Department of Surgery 1 unknown 100416763 Gm18235 - - 16|16 B4 zinc finger protein 777 pseudogene pseudo 320889 Mm.447275 C230079E05Rik - - 15|15 RIKEN cDNA C230079E05 gene protein-coding 100038607 Mm.365888 NR_033542 ENSMUSG00000105602 Gm10636 - - 3 H2|3 predicted gene 10636 ncRNA 97616 C86400 - - - expressed sequence C86400 protein-coding 21248 T(7;11)65H T65H - - reciprocal translocation, Chr 7 and 11, Harwell 65 other 207134 Bbaa12 Bb12 - - B.burgdorferi-associated arthritis 12 unknown 102637687 Mm.452477 Gm34433 - - 7|7 predicted gene, 34433 ncRNA 270109 Mm.145535 NM_175561 ENSMUSG00000060212 Pcnx2 A830048P05|AU067631|E330039K12Rik|Pcnxl2|mKIAA0435 - 8|8 E2 pecanex homolog 2 protein-coding 68545 Mm.329362 NM_001033141 ENSMUSG00000073599 Ecscr 1110006O17Rik|ARIA - 18|18 B2 endothelial cell surface expressed chemotaxis and apoptosis regulator protein-coding 19739 Mm.38548 NM_011268 ENSMUSG00000020599 Rgs9 RGS9-1|Rgs9-2 - 11 E1|11 71.86 cM regulator of G-protein signaling 9 protein-coding 80721 Mm.261542 NM_030556 ENSMUSG00000038496 Slc19a3 A230084E24Rik|AI788884|ThTr2 - 1 C5|1 42.65 cM solute carrier family 19, member 3 protein-coding 100040617 Mm.171720 NR_033533 ENSMUSG00000085183 Wincr1 Gm12603 - 4|4 C4 WNT induced non-coding RNA 1 ncRNA 109146451 NR_144621 Mascrna - - - Malat1-associated small cytoplasmic RNA scRNA 234258 Mm.281749 NM_146208 ENSMUSG00000039396 Neil3 AI449477|BC034753|C85903 - 8|8 B1.3 nei like 3 (E. coli) protein-coding 665287 Gm12990 - - 4|4 D3 predicted gene 12990 pseudo 102631532 XR_387790 Gm29845 - - 8 C1|8 predicted gene, 29845 ncRNA 105243173 XR_870369 Gm39165 - - 8 A4|8 predicted gene, 39165 ncRNA 76657 Mm.417839 NR_040548 ENSMUSG00000097584 1700125G22Rik - - 3|3 A3 RIKEN cDNA 1700125G22 gene ncRNA 780831 Ighv3-8 EG633674|Gm16414 - 12|12 F1 immunoglobulin heavy variable V3-8 other 546828 Gm11829 - - 4|4 A1 SMT3 suppressor of mif two 3 homolog 2 pseudogene pseudo 100039643 Gm2352 - - 1 A2|1 mitochondrial ribosomal protein S36 pseudogene pseudo 102631692 Gm29965 - - 2|2 predicted gene, 29965 ncRNA 72193 Mm.324474 NM_028148 ENSMUSG00000033228 Scaf11 1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013 - 15|15 F1 SR-related CTD-associated factor 11 protein-coding 209540 Mm.297608 NM_001040434 ENSMUSG00000085584 Rtl9 Gm385|Mar9|Mart9|Rgag1 - X|X F2 retrotransposon Gag like 9 protein-coding 100042374 Gm15504 - - 7 D3|7 predicted gene 15504 pseudo 100041359 NM_001112661 Gm15190 - - X|X F4 hepatitis B virus x interacting protein pseudogene pseudo 102636648 XR_376669 Gm33656 - - 4 D2.2|4 predicted gene, 33656 ncRNA 110893 Mm.443748 NM_080440 ENSMUSG00000079055 Slc8a3 AW742262|Ncx3 - 12 D1|12 37.44 cM solute carrier family 8 (sodium/calcium exchanger), member 3 protein-coding 74449 Mm.436652 4933408M05Rik - - 5|5 RIKEN cDNA 4933408M05 gene protein-coding 619307 Mm.31941 NM_001033811 9430078G10Rik - - 19|19 A RIKEN cDNA 9430078G10 gene unknown 27720 D1Dau31 - - - DNA segment, Chr 1, DA Underhill 31 unknown 102632841 XR_388997 Gm30809 - - 11 D|11 predicted gene, 30809 ncRNA 14699 Mm.95398 NM_010314 ENSMUSG00000029663 Gngt1 G(y)1|Gng1 - 6|6 A1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 protein-coding 382207 Mm.281517 NM_199317 ENSMUSG00000037315 Jade3 5730598B06|AI851988|AW544806|Phf16|mKIAA0215 - X|X A1.3 jade family PHD finger 3 protein-coding 102633975 NR_151548 Gm12911 - - 4 C1|4 34.92 cM predicted gene 12911 ncRNA 60704 D2Mit76 - - 2 2.98 cM DNA segment, Chr 2, Massachusetts Institute of Technology 76 unknown 11732 Mm.265264 NM_020332 ENSMUSG00000022265 Ank Ankh|D15Ertd221e|ank|mKIAA1581 - 15 B1|15 10.23 cM progressive ankylosis protein-coding 102635524 XR_382684 Gm32836 - - 13 C3|13 predicted gene, 32836 ncRNA 75934 Mm.9712 4930579D07Rik C86980 - - RIKEN cDNA 4930579D07 gene unknown 71453 Mm.51510 NM_027800 ENSMUSG00000060756 Krtap2-4 5530401P19Rik|KAP2.4|KRTAP2.4 - 11|11 D keratin associated protein 2-4 protein-coding 78928 Mm.28228 NM_133779 ENSMUSG00000017721 Pigt 2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7 - 2|2 H3 phosphatidylinositol glycan anchor biosynthesis, class T protein-coding 99815 AU022733 - - - expressed sequence AU022733 unknown 105244572 Gm40165 - - 3|3 predicted gene, 40165 ncRNA 547023 Gm6014 EG547023 - 8|8 E1 predicted gene 6014 pseudo 102465568 NR_105907 ENSMUSG00000098790 Mir6942 Gm27287|mmu-mir-6942 - 13|13 A3.1 microRNA 6942 ncRNA 100416703 Gm12773 - - 7|7 B1 zinc finger protein 329 pseudogene pseudo 14151 Mm.1070 NM_007998 ENSMUSG00000024588 Fech AI894116|Fcl|fch - 18 E1|18 37.43 cM ferrochelatase protein-coding 102636194 Gm33329 - - 16 A1|16 predicted gene, 33329 pseudo 110631418 LOC110631418 - - - Cyp21a1 5' regulatory region biological-region 110082 Mm.248464 NM_133365 ENSMUSG00000022262 Dnah5 AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603 - 15 B1|15 10.9 cM dynein, axonemal, heavy chain 5 protein-coding 27845 D7Cwr3D D7Cwr3|D7Tm3a - - DNA segment, Chr 7, Case Western Reserve 3D unknown 102633252 Gm31123 - - Y|Y predicted gene, 31123 ncRNA 632166 Gm7082 EG632166 - 8 A4|8 ribosomal protein L3 pseudogene pseudo 19874 NR_024202 ENSMUSG00000064945 Rny3 - - 6 B2.3|6 22.94 cM RNA, Y3 small cytoplasmic (associated with Ro protein) ncRNA 27387 Mm.9593 NM_013781 ENSMUSG00000059013 Sh2d3c Chat|Nsp3|Shep1 - 2|2 B SH2 domain containing 3C protein-coding 102632233 XR_388875 Gm30367 - - 11 B5|11 predicted gene, 30367 ncRNA 109292 Mm.411035 4631423B10Rik - - 6|6 E3 RIKEN cDNA 4631423B10 gene unknown 102631806 Mm.437399 XR_387481 Gm38440 - - 1 G3|1 predicted gene, 38440 ncRNA 105243121 XR_870148 Gm39132 Gm45419 - 8 A1.1|8 predicted gene, 39132 ncRNA 112125 Aliq1 Ali1 - 11 54.6 cM acute lung injury QTL 1 unknown 382770 NM_198676 Vmn2r-ps105 C330014B19Rik - 13|13 B3 vomeronasal 2, receptor, pseudogene 105 pseudo 60800 D3Mit95 - - 3 20.68 cM DNA segment, Chr 3, Massachusetts Institute of Technology 95 unknown 239845 Mm.228018 NM_153394 ENSMUSG00000046961 Gpr156 Gababl - 16|16 B3 G protein-coupled receptor 156 protein-coding 19494 Rb(16.17)54Lub Rb54Lub - - Robertsonian translocation, Chr 16 and 17, Lubeck 54 other 102636774 XR_374565 Gm33753 - - 2 C1.3|2 predicted gene, 33753 ncRNA 76889 Mm.124728 NM_133770 ENSMUSG00000003762 Coq8b 0610012P18Rik|Adck4 - 7|7 A3 coenzyme Q8B protein-coding 21002 T(1;12)52H T52H - - reciprocal translocation, Chr 1 and 12, Harwell 52 other 100417720 Gm18782 - - 7|7 D3 karyopherin alpha 7 (importin alpha 8) pseudogene pseudo 108168994 XR_001784527 Gm46882 - - 4 A5|4 predicted gene, 46882 ncRNA 11629 Mm.10747 NM_019467 ENSMUSG00000024397 Aif1 AI607846|AIF-1|D17H6S50E|G1|Iba1 - 17 B1|17 18.59 cM allograft inflammatory factor 1 protein-coding 100417384 Gm15381 - - 15|15 E3 tripartite motif-containing 59 pseudogene pseudo 100530 AA522022 - - - expressed sequence AA522022 unknown 72350 Mm.158810 NM_172414 ENSMUSG00000045064 Zc2hc1c 2810002I04Rik|AV046379|Fam164c - 12|12 D1 zinc finger, C2HC-type containing 1C protein-coding 445007 Mm.4379 NM_001002929 ENSMUSG00000020739 Nup85 Pcnt1|frount - 11|11 E2 nucleoporin 85 protein-coding 622301 Mm.350896 NM_001100465 ENSMUSG00000079627 Rhox2h Rhox2.8|Rhox2g - X A3.3|X reproductive homeobox 2H protein-coding 61875 D1Mit333 - - 1 39.21 cM DNA segment, Chr 1, Massachusetts Institute of Technology 333 unknown 319404 D430032J08Rik - - 8|8 A3 RIKEN cDNA D430032J08 gene protein-coding 360013 Mm.341248 NM_011586 ENSMUSG00000000631 Myo18a MAJN|MyoPDZ|MysPDZ|SP-R210 - 11|11 B5 myosin XVIIIA protein-coding 108168925 XM_017320472 Gm46841 - - 4 A1|4 predicted gene, 46841 protein-coding 75859 Mm.159604 NM_029463 ENSMUSG00000026882 4930568D16Rik Ggta1l1 - 2|2 B RIKEN cDNA 4930568D16 gene protein-coding 574438 Mm.435653 NM_001045539 ENSMUSG00000058328 Xlr5a Xlr5d - X|X A7.3 X-linked lymphocyte-regulated 5A protein-coding 100503490 Mm.72499 NR_153658 Gm19723 - - 16 B5|16 31.23 cM predicted gene, 19723 ncRNA 100862046 Gm21428 - - Y|Y predicted gene, 21428 protein-coding 102632829 XR_882329 Gm21256 - - Y C1|Y predicted gene, 21256 ncRNA 68721 Mm.171374 NM_023483 ENSMUSG00000037971 1110032A03Rik 4930500N06Rik|c11orf1 - 9|9 A5.3 RIKEN cDNA 1110032A03 gene protein-coding 100862460 XM_017318983 LOC100862460 - - - zinc finger protein OZF-like protein-coding 218793 Mm.23551 NM_144839 ENSMUSG00000058317 Ube2e2 BC016265 - 14|14 A2 ubiquitin-conjugating enzyme E2E 2 protein-coding 108168054 XR_001780840 Gm46394 - - 13 A3.3|13 predicted gene, 46394 ncRNA 78572 D730004N08Rik - - 2|2 RIKEN cDNA D730004N08 gene protein-coding 52543 D18Ertd169e - - - DNA segment, Chr 18, ERATO Doi 169, expressed unknown 546475 Gm5949 EG546475 - 10|10 B2 preferentially expressed antigen in melanoma like 7 pseudogene pseudo 245905 Dilp3 - - - dilated pupils 3 unknown 112414 Mm.391498 4930540M05Rik - - 6|6 RIKEN cDNA 4930540M05 gene ncRNA 102638518 XR_872122 Gm35062 - - 10 D2|10 predicted gene, 35062 ncRNA 170771 Mm.336594 NM_133235 ENSMUSG00000026058 Khdrbs2 6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1 - 1|1 B KH domain containing, RNA binding, signal transduction associated 2 protein-coding 62357 D1Mit462 - - 1 96.27 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 462 unknown 258407 Mm.271337 NM_146412 ENSMUSG00000060787 Olfr464 MOR240-2 - 11|11 C olfactory receptor 464 protein-coding 67789 Mm.458081 NM_026378 ENSMUSG00000019039 Dalrd3 6330580J24Rik|C77829|mir-425 - 9|9 F2 DALR anticodon binding domain containing 3 protein-coding 102640325 XR_391131 LOC102640325 - - 7 A1 uncharacterized LOC102640325 ncRNA 75683 2310035P21Rik - - 19|19 RIKEN cDNA 2310035P21 gene protein-coding 226604 Mm.330032 NM_001164312 ENSMUSG00000051081 Gm4847 EG226604|Fmo12 - 1|1 H2.3 predicted gene 4847 protein-coding 108168616 XM_017318823 LOC108168616 - - Y D Y-linked testis-specific protein 1-like protein-coding 74338 Mm.271635 NM_028878 ENSMUSG00000021565 Slc6a19 4632401C08Rik|B<0>AT1 - 13|13 C1 solute carrier family 6 (neurotransmitter transporter), member 19 protein-coding 546321 Gm15365 EG546321 - X|X A7.3 predicted gene 15365 protein-coding 111865 Pltr9 - - - polytropic long terminal repeat containing proviral locus 9 other 101055693 XR_385205 Gm29711 - - 17 A1|17 predicted gene, 29711 ncRNA 545267 Gm5823 EG545267 - 18|18 E3 predicted gene 5823 pseudo 102634617 Gm29486 - - 1|1 predicted gene 29486 pseudo 73817 4930404F17Rik - - 5|5 RIKEN cDNA 4930404F17 gene protein-coding 54713 Mm.34644 NM_080433 ENSMUSG00000021743 Fezf2 AI451466|AI852056|Fez|Fezl|Zfp312 - 14|14 A1 Fez family zinc finger 2 protein-coding 100548 D130004A15Rik AA673478 - - RIKEN cDNA D130004A15 gene protein-coding 19451 Rb(1.3)1Lub Rb1Lub - - Robertsonian translocation, Chr 1 and 3, Lubeck 1 other 110120376 LOC110120376 - - - VISTA enhancer mm561 biological-region 27671 D11Moh25 - - - DNA segment, Chr 11, KL Mohlke 25 unknown 625591 XM_006528427 ENSMUSG00000095474 Cldn34c2 EG625591|Gm6604 - X|X E3 claudin 34C2 protein-coding 105245465 XR_001780899 Gm40914 - - 13 A3.3|13 predicted gene, 40914 ncRNA 22138 Mm.373672 NM_011652 ENSMUSG00000051747 Ttn 1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru - 2 C3|2 45.13 cM titin protein-coding 14659 Mm.5187 NM_008132 ENSMUSG00000062310 Glrp1 GRP-1 - 1|1 D glutamine repeat protein 1 protein-coding 111811 Iapls1-24 - - - intracisternal A particle, lymphocyte specific 1-24 other 671222 Gm9523 - - 5 A3|5 methionine adenosyltransferase II, alpha pseudogene pseudo 13086 Mm.154643 NM_009997 ENSMUSG00000074254 Cyp2a4 AI893559|Cyp15a1|D7Ucla4 - 7 A3|7 14.39 cM cytochrome P450, family 2, subfamily a, polypeptide 4 protein-coding 435420 Gm5671 EG435420 - 14|14 E2.3 PRP38 pre-mRNA processing factor 38 domain containing A pseudogene pseudo 102635426 XR_379492 Gm32768 - - 9 B|9 predicted gene, 32768 ncRNA 102634042 XR_865201 LOC102634042 - - 1 A3 uncharacterized LOC102634042 ncRNA 102632474 Gm16225 - - 4|4 67.19 cM predicted gene 16225 ncRNA 108168762 XR_001783315 LOC108168762 - - 2 C1.2 uncharacterized LOC108168762 ncRNA 110120470 LOC110120470 - - - VISTA enhancer mm1569 biological-region 171284 Mm.234654 NM_134249 ENSMUSG00000040413 Timd2 AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2 - 11|11 B1.1 T cell immunoglobulin and mucin domain containing 2 protein-coding 105243212 XR_870504 Gm39193 - - 8 B3.3|8 predicted gene, 39193 ncRNA 51982 D1Ggc3e - - - DNA segment, Chr 1, G. Consalez 3, expressed unknown 50868 Mm.248266 NM_016679 ENSMUSG00000003308 Keap1 INRF2|mKIAA0132 - 9|9 A3 kelch-like ECH-associated protein 1 protein-coding 13870 Mm.280913 NM_007948 ENSMUSG00000003549 Ercc1 Ercc-1 - 7 A3|7 9.6 cM excision repair cross-complementing rodent repair deficiency, complementation group 1 protein-coding 723933 NR_030272 ENSMUSG00000065561 Mir369 Mirn369|mir-369|mmu-mir-369 - 12 F1|12 microRNA 369 ncRNA 67358 Mm.87328 NM_026105 ENSMUSG00000020286 1700093K21Rik b2b3025Clo - 11|11 A3.2 RIKEN cDNA 1700093K21 gene protein-coding 100416751 Gm18229 - - 9|9 F4 zinc finger protein 606 pseudogene pseudo 101056149 Mm.421309 NR_105041 ENSMUSG00000086786 Gm15908 - - 13 A3.3|13 14.16 cM predicted gene 15908 ncRNA 102634505 Gm32071 - - 15|15 predicted gene, 32071 pseudo 96967 C78344 - - - expressed sequence C78344 protein-coding 628048 Vmn2r-ps35 EG628048 - 7|7 A1 vomeronasal 2, receptor, pseudogene 35 pseudo 72042 Mm.393405 NM_028071 ENSMUSG00000031827 Cotl1 1810074P22Rik|2010004C08Rik|Clp - 8|8 E1 coactosin-like 1 (Dictyostelium) protein-coding 258540 Mm.223077 NM_146547 ENSMUSG00000061367 Olfr771 MOR114-8 - 10|10 D3 olfactory receptor 771 protein-coding 66712 Mm.263615 NM_025721 ENSMUSG00000046846 Spesp1 4921508E09Rik|AI428149 - 9|9 B sperm equatorial segment protein 1 protein-coding 72784 2810452K05Rik - - 4|4 RIKEN cDNA 2810452K05 gene protein-coding 108168252 XR_001781727 Gm46527 - - 15 E2|15 predicted gene, 46527 protein-coding 18947 Mm.212333 NM_011128 ENSMUSG00000025091 Pnliprp2 PLRP2 - 19|19 D2 pancreatic lipase-related protein 2 protein-coding 105243000 XR_869802 Gm39050 - - 7 E1|7 predicted gene, 39050 ncRNA 57275 Mm.482283 NM_020517 ENSMUSG00000078173 Lenep AU018355|Lep503 - 3 F1|3 39.1 cM lens epithelial protein protein-coding 67136 Mm.330394 NM_025991 ENSMUSG00000005505 Kbtbd4 2510026C23Rik - 2|2 E1 kelch repeat and BTB (POZ) domain containing 4 protein-coding 105243596 XR_880306 Gm39471 - - 11 E2|11 predicted gene, 39471 ncRNA 55925 Mm.213002 NM_018802 ENSMUSG00000031098 Syt8 - - 7|7 F5 synaptotagmin VIII protein-coding 100861686 XM_003688834 Gm21136 - - 7 B3|7 predicted gene, 21136 protein-coding 68955 Mm.146779 NM_026886 ENSMUSG00000063919 Srrm4 1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100 - 5|5 F serine/arginine repetitive matrix 4 protein-coding 12455 Mm.29941 NM_009833 ENSMUSG00000011960 Ccnt1 2810478G24Rik|AI115585|CycT1 - 15|15 F1 cyclin T1 protein-coding 110120451 LOC110120451 - - - VISTA enhancer mm1549 biological-region 107758 Ril1 Ril-1 - - radiation-induced leukemia sensitivity 1 protein-coding 654811 Mm.397791 4930404A12Rik - - 5|5 G1.1 RIKEN cDNA 4930404A12 gene unknown 637043 Mm.425610 Gm7198 - - 10|10 A2 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 50764 Mm.28369 NM_015798 ENSMUSG00000034391 Fbxo15 AU019763|Fbx15|ecat3 - 18|18 E4 F-box protein 15 protein-coding 12894 Mm.18522 NM_013495 ENSMUSG00000024900 Cpt1a C730027G07|CPTI|Cpt1 - 19 A|19 3.08 cM carnitine palmitoyltransferase 1a, liver protein-coding 14994 H2-M6-ps H-2M6|H2-M6 - 17 B1|17 19.16 cM histocompatibility 2, M region locus 6, pseudogene pseudo 632498 Gm7089 EG632498 - 14|14 A2 Crn, crooked neck-like 1 pseudogene pseudo 100503333 Gm14007 - - 2|2 62.63 cM predicted gene 14007 protein-coding 258968 Mm.330384 NM_146966 ENSMUSG00000075081 Olfr1247 MOR231-6 - 2|2 E1 olfactory receptor 1247 protein-coding 18097 Nlf1 - - - neonatal lethal factor 1 unknown 259032 Mm.223415 NM_147030 ENSMUSG00000111747 Olfr1134 MOR176-1 - 2|2 D olfactory receptor 1134 protein-coding 102634366 XR_391645 Gm31966 - - 7 D2|7 predicted gene, 31966 ncRNA 16401 Mm.31903 NM_010576 ENSMUSG00000027009 Itga4 CD49D|Itga4B - 2 C3|2 47.38 cM integrin alpha 4 protein-coding 100417031 Gm18373 - - 11|11 B5 breakpoint cluster region pseudogene pseudo 100042337 XM_017318767 Gm20910 - - Y|Y A2 predicted gene, 20910 protein-coding 102643131 LOC102643131 - - - protein tyrosine phosphatase type IVA 1 protein-coding 66343 Mm.49942 NM_175106 ENSMUSG00000036975 Tmem177 2300008B03Rik - 1|1 E2.3 transmembrane protein 177 protein-coding 52350 D5Ertd521e - - 5 19.14 cM DNA segment, Chr 5, ERATO Doi 521, expressed unknown 100036439 Cmcs - - 17 17.98 cM cerebral malaria susceptibility in CBA/N unknown 100036447 Scpro7 - - 5 18.4 cM Stem cell proliferation 7 unknown 102638756 XR_387453 Gm35244 - - 1 F|1 predicted gene, 35244 ncRNA 108167750 XR_001779569 LOC108167750 - - 1 H4 uncharacterized LOC108167750 ncRNA 112259 C10bw6 - - X 30.84 cM castaneus 10 week body weight 6 unknown 105244190 XR_866405 Gm39842 - - 2 C2|2 predicted gene, 39842 ncRNA 331021 Mm.482480 9630017O17 - - 9|9 F1 uncharacterized protein 9630017O17 protein-coding 66456 Mm.124828 NR_033780 ENSMUSG00000087497 2810001G20Rik AW045514 - 11|11 B3 RIKEN cDNA 2810001G20 gene ncRNA 105246223 Mm.35117 Gm26873 - - 17|17 predicted gene, 26873 ncRNA 100503147 Mm.91961 NR_040369 ENSMUSG00000086006 Gm13293 - - 2 A1|2 8.59 cM predicted gene 13293 ncRNA 108168622 XM_017318830 LOC108168622 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 330053 Mm.490188 XR_001784823 4933427G23Rik - - 5|5 A3 RIKEN cDNA 4933427G23 gene unknown 100113452 Brml13 - - - bone response to mechanical loading 13 unknown 105242610 XR_868825 Gm38778 - - 6 A3.1|6 predicted gene, 38778 ncRNA 13178 Mm.298892 NM_007832 ENSMUSG00000029366 Dck - - 5|5 E1 deoxycytidine kinase protein-coding 225791 Mm.147052 NM_146090 ENSMUSG00000049090 Zadh2 C530046K17Rik|PTGR-3|Pthr3 - 18|18 E4 zinc binding alcohol dehydrogenase, domain containing 2 protein-coding 78937 Mm.105343 NM_030235 ENSMUSG00000029787 Avl9 5830411G16Rik|D730049P16Rik|mKIAA0241 - 6|6 B3 AVL9 cell migration associated protein-coding 258678 Mm.377635 NM_146683 ENSMUSG00000050815 Olfr1441 MOR215-2 - 19|19 A olfactory receptor 1441 protein-coding 102637978 XR_374734 Gm34657 - - 2 C3|2 predicted gene, 34657 ncRNA 105243610 XR_874008 Gm39477 - - 13 D2.3|13 predicted gene, 39477 ncRNA 102637813 XR_383942 Gm34529 - - 15 B3.1|15 predicted gene, 34529 ncRNA 101228 AU014678 - - - expressed sequence AU014678 unknown 67205 Mm.259121 NM_026031 ENSMUSG00000028907 Utp11 2700082D03Rik|CGI-94|Cgi94|Utp11l - 4|4 D2.2 UTP11 small subunit processome component protein-coding 100035412 Hmtb3 - - - hemostasis and thrombosis 3 unknown 319208 Mm.436798 XR_872389 ENSMUSG00000087122 4930403D09Rik - - 11|11 A4 RIKEN cDNA 4930403D09 gene ncRNA 30910 C230037E05Rik AI256357 - - RIKEN cDNA C230037E05 gene protein-coding 105244841 XR_872666 Gm40376 - - 12 A3|12 predicted gene, 40376 ncRNA 112091 Bglq4 - - 4 33.96 cM body growth late QTL 4 unknown 110120439 LOC110120439 - - - VISTA enhancer mm1561 biological-region 105243152 XR_870285 Gm39151 - - 8 A2|8 predicted gene, 39151 ncRNA 83490 Mm.222266 NM_031376 ENSMUSG00000025017 Pik3ap1 1810044J04Rik|BCAP - 19|19 C3 phosphoinositide-3-kinase adaptor protein 1 protein-coding 98103 C76454 - - - expressed sequence C76454 unknown 102467378 n-TSgct3 n-Ts17 - 11 B3|11 nuclear encoded tRNA serine 3 (anticodon GCT) tRNA 100316739 NR_035407 ENSMUSG00000080669 Mir1224 Mirn1224|mir-1224|mmu-mir-1224 - 16 B1|16 12.48 cM microRNA 1224 ncRNA 102639459 XR_383414 Gm35766 - - 14 C1|14 predicted gene, 35766 ncRNA 258333 Mm.223026 NM_146336 ENSMUSG00000093901 Olfr893 MOR170-11 - 9|9 A5.1 olfactory receptor 893 protein-coding 627716 Gm12020 - - 11|11 A3.1 nucleolin pseudogene pseudo 100035300 Srilp Srilp1 - - sleep response to influenza, light phase unknown 108167570 Gm45445 - - 8 B3.1|8 40S ribosomal protein S27-like pseudogene pseudo 100042403 Gm3828 - - 10|10 C1 predicted gene 3828 pseudo 102640820 XR_876420 Gm36798 - - 17 A1|17 predicted gene, 36798 ncRNA 102639511 Mm.383549 XR_379669 Gm2065 100039144|Gm38398 - 9|9 E2 predicted gene 2065 ncRNA 245857 Mm.248388 NM_198113 ENSMUSG00000034616 Ssh3 SSH-3|SSH-3L - 19|19 A slingshot protein phosphatase 3 protein-coding 12182 Mm.246332 NM_009763 ENSMUSG00000029082 Bst1 114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65 - 5 B3|5 23.84 cM bone marrow stromal cell antigen 1 protein-coding 105734728 Gm45926 - - 17 B2|17 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 pseudogene pseudo 105243016 XR_869849 Gm39061 - - 7 E2|7 predicted gene, 39061 ncRNA 100035378 Spmd1 - - - spermatogenesis defect 1 unknown 15925 Mm.28366 NM_031156 ENSMUSG00000056999 Ide 1300012G03Rik|4833415K22Rik|AA675336|AI507533 - 19 C2|19 32.24 cM insulin degrading enzyme protein-coding 77110 Mm.41715 NM_029868 ENSMUSG00000034042 Gpbp1l1 5330440M15Rik|BC002292 - 4|4 D1 GC-rich promoter binding protein 1-like 1 protein-coding 102637896 Gm34592 - - 11|11 predicted gene, 34592 ncRNA 100417896 Gm18889 - - 15|15 B3.1 heterogeneous nuclear ribonucleoprotein C pseudogene pseudo 667260 Mm.470166 Gm8543 EG667260 - 9|9 A5.1 actin, gamma, cytoplasmic 1 pseudogene pseudo 628211 Gm6855 EG628211 - 7 A1|7 ribosomal protein L7A pseudogene pseudo 101522 Mm.442596 AI314338 - - - expressed sequence AI314338 unknown 100416343 Gm18055 - - 7|7 A3 sepiapterin reductase pseudogene pseudo 545205 Mm.383371 NM_001005485 ENSMUSG00000090675 Olfr111 - - 17|17 B1 olfactory receptor 111 protein-coding 105245774 Gm41170 - - 14|14 predicted gene, 41170 ncRNA 396184 Mm.386930 NM_201411 ENSMUSG00000047787 Flrt1 AW742165|D630040I23Rik - 19|19 A fibronectin leucine rich transmembrane protein 1 protein-coding 97139 C77664 - - - expressed sequence C77664 protein-coding 112083 Swq2 - - - spleen weight QTL 2 unknown 108079 Mm.48638 NM_178143 ENSMUSG00000028518 Prkaa2 2310008I11Rik|A830082D05|AMPKalpha2 - 4|4 C6 protein kinase, AMP-activated, alpha 2 catalytic subunit protein-coding 94049 Ms10h MMS10-H - 6|6 minisatellite 10h detected by probe MMS10 other 100038380 Mm.364197 Gm10837 - - 14 E5|14 predicted gene 10837 unknown 240633 Mm.58924 NM_172837 ENSMUSG00000024771 Lipk 9930115F20|BC055815|Lipl2 - 19|19 C1 lipase, family member K protein-coding 105242737 XR_869357 Gm38873 - - 6 E3|6 predicted gene, 38873 ncRNA 108416 Xmmv20 Env-20|Xmmv-20 - - xenotropic-MCF leukemia virus 20 other 100417097 Gm18396 - - 17|17 A3.3 vomeronasal 2, receptor 10 pseudogene pseudo 102638134 XR_379520 Gm34770 - - 9 B|9 predicted gene, 34770 ncRNA 105245679 XR_874219 Gm41096 - - 14 A1|14 predicted gene, 41096 ncRNA 102639182 XR_374846 Gm38515 - - 2 E2|2 predicted gene, 38515 ncRNA 104120 H52 H(go)|H(pi)|H56 - - histocompatibility 52 protein-coding 111249 H2-M10-ps2 5.4H - - histocompatibility 2, M region locus, pseudogene 2 pseudo 105242939 XR_882073 Gm39011 - - 7 B3|7 predicted gene, 39011 ncRNA 53959 Mm.300210 AA914427 - - - EST AA914427 protein-coding 231863 Mm.89753 NM_001033312 ENSMUSG00000066640 Fbxl18 AI427077|B130019G13Rik|C330021B20Rik - 5 G2|5 F-box and leucine-rich repeat protein 18 protein-coding 112163555 Mm.440701 AI035346 - - - expressed sequence AI035346 protein-coding 102635971 Mm.378568 XR_382906 Gm33172 - - 13 D2.2|13 predicted gene, 33172 ncRNA 56371 Mm.24202 NM_019757 ENSMUSG00000020235 Fzr1 AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1 - 10|10 C1 fizzy and cell division cycle 20 related 1 protein-coding 224055 Mm.39248 NM_001008230 ENSMUSG00000047531 Rtp2 Gm605 - 16|16 B1 receptor transporter protein 2 protein-coding 626571 Gm6685 EG626571 - 11 A3.3|11 cytochrome b5 domain containing 1 pseudogene pseudo 108167741 XR_001779523 Gm46167 - - 1 H2.2|1 predicted gene, 46167 ncRNA 100035763 Scc11 - - 4 57.41 cM colon tumor susceptibility 11 unknown 102638598 XR_385829 Gm35125 - - 17 E4|17 predicted gene, 35125 ncRNA 52559 D15Ertd244e - - - DNA segment, Chr 15, ERATO Doi 244, expressed unknown 677156 Mm.484117 NM_001100187 ENSMUSG00000062464 Cyp4f37 Gm9705 - 17 B1|17 cytochrome P450, family 4, subfamily f, polypeptide 37 protein-coding 269997 Mm.221270 NM_175560 ENSMUSG00000054381 Zfp747 6430604K15Rik - 7|7 F3 zinc finger protein 747 protein-coding 104221 Ly30 Ly-30 - - lymphocyte antigen 30 protein-coding 101759 AU021169 - - - expressed sequence AU021169 protein-coding 105242778 XR_869455 Gm38902 - - 6 F3|6 predicted gene, 38902 ncRNA 359981 DXMgc118 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 118 unknown 404455 Olfr991-ps1 GA_x5J8B7W531T-1305505-1304608 - 2|2 D olfactory receptor 991, pseudogene 1 pseudo 238395 Mm.436975 NM_001101472 ENSMUSG00000079013 Serpina3j AI506554|EG238395|Gm4931 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J protein-coding 241688 Mm.442156 NM_172859 ENSMUSG00000037259 Dzank1 2810039F03Rik|6330439K17Rik|Ankrd64 - 2|2 G1 double zinc ribbon and ankyrin repeat domains 1 protein-coding 233865 Mm.274389 NM_001081022 ENSMUSG00000032743 D430042O09Rik Kiaa0556 - 7|7 F3 RIKEN cDNA D430042O09 gene protein-coding 16493 Mm.222831 NM_145983 ENSMUSG00000045534 Kcna5 Kv1.5 - 6 F3|6 61.35 cM potassium voltage-gated channel, shaker-related subfamily, member 5 protein-coding 100418372 Gm17076 - - 2|2 E1 ribosomal RNA processing 8, methyltransferase, homolog pseudogene pseudo 381816 Mm.46114 NM_199034 ENSMUSG00000047720 4922502D21Rik Clec2m|Gm1074|SPATA78 - 6|6 F3 RIKEN cDNA 4922502D21 gene protein-coding 100504549 Mm.440349 NR_046044 ENSMUSG00000112388 AI463170 - - 12|12 C3 expressed sequence AI463170 ncRNA 112163572 AV320309 - - - expressed sequence AV320309 protein-coding 621837 Gm6265 EG621837 - 12|12 C1 predicted pseudogene 6265 protein-coding 105941 AL022815 - - - expressed sequence AL022815 unknown 102640741 XR_378576 Gm36737 - - 7 F3|7 predicted gene, 36737 ncRNA 13599 Mm.140765 NM_021306 ENSMUSG00000026247 Ecel1 DINE|xce - 1|1 C5 endothelin converting enzyme-like 1 protein-coding 384087 Gm13146 - - 4|4 E1 carnitine deficiency-associated gene expressed in ventricle 3 pseudogene pseudo 109989 Ri2 Ri-2 - - recognition of identity 2 unknown 21399 Mm.207263 NM_011541 ENSMUSG00000033813 Tcea1 S-II - 1|1 A1 transcription elongation factor A (SII) 1 protein-coding 102636376 XR_385671 Gm33461 - - 17 D|17 predicted gene, 33461 ncRNA 60912 D8Mit91 - - 8 72.73 cM DNA segment, Chr 8, Massachusetts Institute of Technology 91 unknown 100126030 Mm.470901 BC037039 - - - cDNA sequence BC037039 unknown 105243353 XR_870563 Gm39300 - - 9 A3|9 predicted gene, 39300 ncRNA 112222 Skts12 - - 6 77.7 cM skin tumor susceptibility 12 unknown 493159 Splq3 - - - spleen weight QTL 3 unknown 105243941 Gm39651 - - 1|1 predicted gene, 39651 ncRNA 67003 Mm.334206 NM_025899 ENSMUSG00000030884 Uqcrc2 1500004O06Rik - 7|7 F2 ubiquinol cytochrome c reductase core protein 2 protein-coding 53797 D2H11S411 D11S411h - - DNA segment, Chr 2, human D11S411 unknown 102640758 XR_871757 Gm36750 - - 10 B4|10 predicted gene, 36750 ncRNA 61811 D2Mit374 - - 2 28.49 cM DNA segment, Chr 2, Massachusetts Institute of Technology 374 unknown 19359 Mm.196846 NM_009011 ENSMUSG00000028426 Rad23b 0610007D13Rik|AV001138|HR23B|mHR23B|p58 - 4|4 B3 RAD23 homolog B, nucleotide excision repair protein protein-coding 493064 Lbm1 - - 2 22.5 cM lean body mass 1 unknown 20366 Gm4748 Serf2-ps - 4 A5|4 small EDRK-rich factor 2 pseudogene pseudo 105245941 XR_875323 Gm41313 - - 15 B3.1|15 predicted gene, 41313 ncRNA 102632911 XR_382204 Gm30863 - - 13 A3.3|13 predicted gene, 30863 ncRNA 70377 Mm.275878 NM_024440 ENSMUSG00000009092 Derl3 1810006I20Rik|1810063P04Rik|IZP6|derlin-3 - 10|10 C1 Der1-like domain family, member 3 protein-coding 111545 Pmv28 Pmv-28 - - polytropic murine leukemia virus 28 other 11893 Asp1 Ias|asp-1 - - audiogenic seizure prone 1 unknown 105247134 XR_881286 Gm42289 - - 4 B2|4 predicted gene, 42289 ncRNA 234848 Rpl13-ps1 Gm11441 - 11|11 C ribosomal protein L13, pseudogene 1 pseudo 666798 Gm8295 EG666798 - 18|18 C predicted gene 8295 pseudo 330890 Mm.334969 NM_177905 ENSMUSG00000036912 Piwil4 9230101H05Rik|Miwi2 - 9|9 A2 piwi-like RNA-mediated gene silencing 4 protein-coding 102640494 XR_379908 Gm36540 - - 9 F3|9 predicted gene, 36540 ncRNA 102637083 Gm33985 - - 12|12 predicted gene, 33985 protein-coding 76161 Mm.41638 NM_029530 ENSMUSG00000027270 Lamp5 3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5 - 2|2 F3 lysosomal-associated membrane protein family, member 5 protein-coding 246707 Mm.23462 NM_145158 ENSMUSG00000024053 Emilin2 FOAP-10 - 17|17 E1.3 elastin microfibril interfacer 2 protein-coding 241197 Mm.123919 NM_198028 ENSMUSG00000092572 Serpinb10 9830131G07|BB233602|Serpinb10-ps - 1|1 E2.1 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10 protein-coding 102640954 XR_388184 Gm36896 - - 8 E2|8 predicted gene, 36896 ncRNA 108168188 Gm46474 - - 14 B|14 predicted gene, 46474 pseudo 78796 Mm.266886 NM_030185 ENSMUSG00000029179 Zcchc4 4930449I23Rik - 5|5 C1 zinc finger, CCHC domain containing 4 protein-coding 258445 Mm.377507 NM_146453 ENSMUSG00000051680 Olfr693 MOR283-8 - 7|7 E3 olfactory receptor 693 protein-coding 84092 Mm.272629 NM_019729 ENSMUSG00000027363 Usp8 AI574262|AW557536|Ubpy|mKIAA0055 - 2|2 F1 ubiquitin specific peptidase 8 protein-coding 18220 Mm.258923 NM_008749 ENSMUSG00000030824 Nucb1 B230337F23Rik|C77483|Calnuc|MTEST82|Nucb - 7|7 B3 nucleobindin 1 protein-coding 674152 Lgals1-ps1 Gm9612 - 17|17 B1 lectin, galactose binding, soluble 1, pseudogene 1 pseudo 213498 Mm.287267 NM_001003912 ENSMUSG00000041977 Arhgef11 PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380 - 3|3 F1 Rho guanine nucleotide exchange factor (GEF) 11 protein-coding 100039062 Mm.490648 NR_045113 Gm2027 - - 12 B2|12 nuclear assembly factor 1 homolog pseudogene pseudo 102640282 XR_385514 Gm26885 - - 17 A3.3|17 predicted gene, 26885 ncRNA 69389 Mm.302721 NM_027067 ENSMUSG00000048155 H2bfm 1700014N06Rik|H2bfw|H2bl2 - X|X F1 H2B histone family, member M protein-coding 50927 Mm.257181 NM_016777 ENSMUSG00000028693 Nasp 5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T - 4 D1|4 53.24 cM nuclear autoantigenic sperm protein (histone-binding) protein-coding 11863 Mm.250265 NM_009709 ENSMUSG00000015522 Arnt D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051 - 3 F2.1|3 40.74 cM aryl hydrocarbon receptor nuclear translocator protein-coding 73812 Mm.159068 4930402C16Rik - - 2|2 RIKEN cDNA 4930402C16 gene protein-coding 210757 Mm.123021 NM_178666 ENSMUSG00000049109 Themis E430004N04Rik|Gasp|Spot|Tsepa|thylex - 10|10 A4 thymocyte selection associated protein-coding 258563 Mm.223092 NM_146570 ENSMUSG00000075211 Olfr1006 MOR213-4 - 2|2 D olfactory receptor 1006 protein-coding 100035997 Elorr2 - - 3 66.69 cM ethanol induced loss of righting response 2 unknown 105246260 XR_876749 Gm41568 - - 17 B1|17 predicted gene, 41568 ncRNA 15228 Mm.4704 NM_008241 ENSMUSG00000020950 Foxg1 2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1 - 12 B3|12 21.78 cM forkhead box G1 protein-coding 106660621 LOC106660621 SRR1 - 3 A2-B Sox2 5' regulatory region biological-region 102639921 XR_379672 Gm36120 - - 9 E2|9 predicted gene, 36120 ncRNA 329324 Mm.76710 NM_181546 ENSMUSG00000016200 Syt14 B230320I09Rik|sytXIV - 1|1 H6 synaptotagmin XIV protein-coding 621852 Mm.490237 NM_001040089 ENSMUSG00000095510 Rhox3f Rhox3.6|Rhox3e - X|X A3.3 reproductive homeobox 3F protein-coding 71484 Mm.444372 XR_001785268 8430415O14Rik - - 6|6 B3 RIKEN cDNA 8430415O14 gene ncRNA 100101417 Pbwg1.1 - - - postnatal body weight growth 1.1 unknown 72883 2900035I09Rik - - 7|7 RIKEN cDNA 2900035I09 gene unknown 17150 Mm.7386 NM_008546 ENSMUSG00000060572 Mfap2 AI893631|Magp|Magp1 - 4|4 D3 microfibrillar-associated protein 2 protein-coding 70986 Mm.460738 NM_175161 4931422A03Rik - - 2|2 E2 RIKEN cDNA 4931422A03 gene protein-coding 381347 Mm.441450 NR_024257 4930412O13Rik Gm10853 - 2|2 A1 RIKEN cDNA 4930412O13 gene ncRNA 71325 Mm.68064 NM_027762 ENSMUSG00000027908 Tchhl1 5430400H23Rik|AA589420|S100a17|Thhl1 - 3|3 F2.1 trichohyalin-like 1 protein-coding 105246059 NR_153801 Gm41410 - - 16 A1|16 predicted gene, 41410 ncRNA 105886298 Mm.16366 NM_010839 ENSMUSG00000090110 Cmc4 Mtcp1nb|p8MTCP1 - X A7.3|X C-x(9)-C motif containing 4 protein-coding 620641 Vmn2r-ps66 EG620641 - 7|7 D3 vomeronasal 2, receptor, pseudogene 66 pseudo 16191 Mm.4461 NM_010558 ENSMUSG00000036117 Il5 Il-5 - 11 B1.3|11 31.99 cM interleukin 5 protein-coding 102635113 XR_377527 Gm32533 - - 6 A3.3|6 predicted gene, 32533 ncRNA 20409 Mm.172222 NM_017375 ENSMUSG00000024725 Ostf1 C78236|SH3P2|Sh3d3 - 19 B|19 13.17 cM osteoclast stimulating factor 1 protein-coding 108168855 LOC108168855 - - 3 F3 40S ribosomal protein S23 pseudogene pseudo 404321 Mm.355212 NM_207559 ENSMUSG00000095483 Olfr776 MOR111-12 - 10|10 D3 olfactory receptor 776 protein-coding 20239 Mm.260900 NM_009125 ENSMUSG00000042605 Atxn2 9630045M23Rik|ATX2|AW544490|Sca2 - 5|5 F ataxin 2 protein-coding 100093694 Trnag-ccc - - - transfer RNA glycine (anticodon CCC) tRNA 102635474 XR_375904 Gm32803 - - 3 F2.2|3 predicted gene, 32803 ncRNA 102636126 XR_379624 ENSMUSG00000098875 Gm27211 - - 9 D|9 predicted gene 27211 ncRNA 77772 Mm.164013 NM_029974 ENSMUSG00000042672 Dcst1 A330106H01Rik - 3|3 F1 DC-STAMP domain containing 1 protein-coding 110746 Psp-rs1 Psp-2|Psp2 - - parotid secretory protein related sequence 1 protein-coding 54563 Mm.28162 NM_018815 ENSMUSG00000030091 Nup210 9830001L10|AI836801|Pom210|gp190|gp210 - 6 D1|6 40.3 cM nucleoporin 210 protein-coding 69987 Mm.239376 NM_027283 ENSMUSG00000026809 Spaca9 1700026L06Rik|MAST - 2|2 A3 sperm acrosome associated 9 protein-coding 383282 Gm5231 EG383282 - 17|17 E4 developmentally regulated GTP binding protein 2 pseudogene pseudo 102636026 LOC102636026 - - 7 A1 zinc finger protein 419-like pseudo 105244407 Gm40020 - - 2 D|2 predicted gene, 40020 pseudo 104355 Rnrc - - - ribosomal RNA, fragment C rRNA 102637701 XR_383839 Gm34444 - - 15 A1|15 predicted gene, 34444 ncRNA 100126434 Trgj4 Gm16673 - 13|13 A2 T cell receptor gamma joining 4 other 245967 T(6F3;10B2)40Dn - - - reciprocal translocation, Chr 6, cytogenetic band F3; and Chr 10, cytogenetic band B2, Davisson 40 other 319571 B230219N15Rik - - 10|10 RIKEN cDNA B230219N15 gene protein-coding 624159 Gm6476 EG624159 - 17|17 E2 ribosomal protein S6 pseudogene pseudo 61512 D8Mit126 - - 8 26.7 cM DNA segment, Chr 8, Massachusetts Institute of Technology 126 unknown 102639680 XR_373355 Gm35935 - - 1 B|1 predicted gene, 35935 ncRNA 100034909 Hdlq27 - - 15 38.02 cM HDL QTL 27 unknown 109468 Itbq1 - - 3 22.62 cM inspiratory timing at baseline QTL 1 unknown 109279942 LOC109279942 Mm389 - - VISTA enhancer mm389 biological-region 269587 Mm.30038 NM_183428 ENSMUSG00000028906 Epb41 4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056 - 4 D2.3|4 64.54 cM erythrocyte membrane protein band 4.1 protein-coding 102633738 Gm31491 - - 7 E1|7 predicted gene, 31491 pseudo 100043296 Gm4342 - - 8 E2|8 predicted gene 4342 pseudo 16639 Mm.439698 NM_010650 ENSMUSG00000089727 Klra8 Cmv-1|Cmv1|Ly49h|Ly49u<129> - 6 F3|6 63.44 cM killer cell lectin-like receptor, subfamily A, member 8 protein-coding 493045 Cia15 mCia15 - 1 2.08 cM collagen induced arthritis QTL 15 unknown 320024 Mm.24576 NM_178772 ENSMUSG00000027698 Nceh1 Aadacl1|B230106I24Rik|CPO-BP|Nceh - 3|3 A3 neutral cholesterol ester hydrolase 1 protein-coding 493011 Pbwg11 - - 2 77.36 cM postnatal body weight growth 11 unknown 100093679 Trnae-cuc - - - transfer RNA glutamic acid (anticodon CUC) tRNA 227613 Mm.227260 NM_146116 ENSMUSG00000036752 Tubb4b 4930542G03Rik|Tubb2c|Tubb2c1 - 2|2 A3 tubulin, beta 4B class IVB protein-coding 102633688 XR_387406 ENSMUSG00000100830 Gm28441 - - 1 E4|1 predicted gene 28441 ncRNA 233405 Mm.322870 NM_178070 ENSMUSG00000030534 Vps33b - - 7|7 D2 vacuolar protein sorting 33B protein-coding 112283 Sluc14 - - 18 21.09 cM susceptibility to lung cancer 14 unknown 381085 Mm.328934 NM_198647 ENSMUSG00000042203 Tbc1d22b BC045600 - 17|17 A3.3 TBC1 domain family, member 22B protein-coding 102635625 XR_383674 ENSMUSG00000115664 Gm32913 - - 14 E1|14 predicted gene, 32913 ncRNA 105246819 XR_879166 Gm42043 - - 8 D3|8 predicted gene, 42043 ncRNA 60779 D3Mit19 - - - DNA segment, Chr 3, Massachusetts Institute of Technology 19 unknown 629822 Mm.359198 Ighv7-3 Gm16842|IgVH|Igh-VS107|S107-VH11|V(11)-acg|V(11)-b|V(11)-djn|V(11)-f - 12|12 F1 immunoglobulin heavy variable 7-3 pseudo 100038546 Mm.484517 Gm10743 - - - predicted gene 10743 unknown 102633431 XR_379474 Gm31261 - - 9 B|9 predicted gene, 31261 ncRNA 73909 Mm.410842 4833419O12Rik - - 16|16 RIKEN cDNA 4833419O12 gene protein-coding 100417434 NR_102273 ENSMUSG00000092125 AA543401 Mycs-like - 9|9 F1 myc-like oncogene, s-myc protein pseudogene pseudo 61312 D3Mit146 - - 3 63.37 cM DNA segment, Chr 3, Massachusetts Institute of Technology 146 unknown 102632339 XR_874734 Gm30438 - - 14 D1|14 predicted gene, 30438 ncRNA 105245534 XR_873574 Gm40979 - - 13 B3|13 predicted gene, 40979 ncRNA 105243119 XR_870135 Gm39130 - - 8 A1.1|8 predicted gene, 39130 ncRNA 68559 Mm.12746 NM_178939 ENSMUSG00000027472 Pdrg1 1110004D19Rik|AU020945|AV006589|Pdrg - 2|2 H1 p53 and DNA damage regulated 1 protein-coding 70004 Mm.158317 NR_029436 ENSMUSG00000038782 1700028J19Rik - - 7|7 B3 RIKEN cDNA 1700028J19 gene ncRNA 109702 Knsl2b Tctex-7|Tctex-7B|Tctex7|Tctex7b - - kinesin-like 2b protein-coding 76188 Mm.93388 6330571C24Rik - - 11|11 RIKEN cDNA 6330571C24 gene protein-coding 100042794 Mm.123156 XR_382201 Gm4035 - - 13 A3.3|13 predicted gene 4035 unknown 72469 Mm.264743 NM_152813 ENSMUSG00000020937 Plcd3 2610205J15Rik|mKIAA1964 - 11 E1|11 66.71 cM phospholipase C, delta 3 protein-coding 83945 Mm.248337 NM_023646 ENSMUSG00000004069 Dnaja3 1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l - 16 A1|16 2.46 cM DnaJ heat shock protein family (Hsp40) member A3 protein-coding 230810 Mm.358876 NM_001039677 ENSMUSG00000028836 Slc30a2 ZnT-2|Znt2 - 4 D3|4 66.61 cM solute carrier family 30 (zinc transporter), member 2 protein-coding 102632959 Gm30901 - - 1|1 predicted gene, 30901 ncRNA 100035348 Bwtn3 WTN11.1 - 11 42.94 cM body weight at necropsy 3 unknown 382640 Gm5189 EG382640 - 12|12 F1 transmembrane protein 11 pseudogene pseudo 21380 Mm.295194 NM_011532 ENSMUSG00000009097 Tbx1 - - 16 A3|16 11.51 cM T-box 1 protein-coding 384275 Gm5297 EG384275 - 5|5 C3.2 predicted gene 5297 pseudo 102636632 XR_374261 Gm33642 - - 2 B|2 predicted gene, 33642 ncRNA 668986 Gm9432 EG668986 - X|X A1.1 predicted gene 9432 pseudo 107260 Mm.203921 NM_134150 ENSMUSG00000024767 Otub1 AI850305 - 19|19 A OTU domain, ubiquitin aldehyde binding 1 protein-coding 234797 Mm.101958 NM_172286 ENSMUSG00000031824 6430548M08Rik AW049007|Kiaa0513|mKIAA0513 - 8|8 E1 RIKEN cDNA 6430548M08 gene protein-coding 110120503 LOC110120503 - - - VISTA enhancer mm1475 biological-region 112030 Lwq6 - - - liver weight QTL 6 unknown 102632734 Gm30730 - - 10|10 predicted gene, 30730 ncRNA 53309 332I15.Sp6 - - - DNA segment, 332I15.Sp6 (Roswell Park) unknown 493032 Lith14 - - 16 41.08 cM lithogenic gene 14 unknown 100125251 Trbj1-4 Gm16643 - 6 19.69 cM|6 B1 T cell receptor beta joining 1-4 other 76138 Mm.211744 NM_001162956 ENSMUSG00000038010 Ccdc138 6230424H07Rik|BC042726 - 10|10 B4 coiled-coil domain containing 138 protein-coding 57913 Mm.334321 NM_022654 ENSMUSG00000025507 Pidd1 1200011D09Rik|AU042446|Lrdd|Pidd - 7|7 F5 p53 induced death domain protein 1 protein-coding 12965 Mm.440053 NM_144761 ENSMUSG00000073658 Crygb Cryg-3|DGcry-3|Nop - 1 C2|1 32.82 cM crystallin, gamma B protein-coding 11984 Mm.30155 NM_009729 ENSMUSG00000024121 Atp6v0c Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3 - 17|17 A3.3 ATPase, H+ transporting, lysosomal V0 subunit C protein-coding 17938 Mm.3746 NM_013608 ENSMUSG00000061315 Naca AL022831|AL024382|Gm1878|mKIAA0363|skNAC - 10|10 D3 nascent polypeptide-associated complex alpha polypeptide protein-coding 666617 Gm12452 - - 4|4 B1 predicted gene 12452 pseudo 13318 Del(7)Tyr Del(7)25H|Del(7)c-25H|Del25H|Tyr - - deletion, Chr 7, albino Harwell 25 other 53867 Mm.334994 NM_016919 ENSMUSG00000004098 Col5a3 - - 9|9 A3 collagen, type V, alpha 3 protein-coding 100043120 Gm4242 - - 19 D3|19 predicted gene 4242 other 100418342 Gm19150 - - 16|16 A1 nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene pseudo 105244473 XR_867379 Gm40075 - - 3 E3|3 predicted gene, 40075 ncRNA 105247105 XR_881169 Gm42263 - - 4 A3|4 predicted gene, 42263 ncRNA 102638652 XR_377952 Gm35165 - - 6 E1|6 predicted gene, 35165 ncRNA 77835 Mm.348412 NR_130167 ENSMUSG00000086262 A930031H19Rik A930004I12Rik - 4|4 D2.2 RIKEN cDNA A930031H19 gene ncRNA 171270 Mm.377222 NM_134236 ENSMUSG00000069289 Vmn1r203 V1rh11 - 13|13 A3.1 vomeronasal 1 receptor 203 protein-coding 233871 Mm.231450 NM_183020 ENSMUSG00000032637 Atxn2l A2D|A2LG|A2RP|A2lp|Atxnl2 - 7|7 F3 ataxin 2-like protein-coding 21120 T(2;15)15Ad T15Ad - - reciprocal translocation, Chr 2 and 15, Adler 15 other 56369 Mm.24772 NM_019735 ENSMUSG00000010911 Apip APIP2|CGI-29|Mmrp19 - 2|2 E2 APAF1 interacting protein protein-coding 102633026 Gm13717 - - 6 A3.3|6 12.36 cM predicted gene 13717 pseudo 102640310 XR_869256 Gm36409 - - 6 D1|6 predicted gene, 36409 ncRNA 100503552 Gm19765 - - 7|7 54.6 cM predicted gene, 19765 ncRNA 21145 T(2;6)7Ca T7Ca - - reciprocal translocation, Chr 2 and 6, Carter 7 other 20018 Mm.317557 NM_009087 ENSMUSG00000029642 Polr1d 1110003G10Rik|AC19|RPA16|Rpo1-3 - 5|5 G3 polymerase (RNA) I polypeptide D protein-coding 16269 In(2)40Rk In40Rk - - inversion, Chr 2, Roderick 40 other 102639024 Gm28489 - - Y|Y predicted gene 28489 protein-coding 62744 D17Mit216 - - 17 25.86 cM DNA segment, Chr 17, Massachusetts Institute of Technology 216 unknown 434490 Gm5626 - - 13 C1|13 stomatin (Epb7.2)-like 2 pseudogene pseudo 102636148 XR_383788 Gm33299 - - 14 E5|14 predicted gene, 33299 ncRNA 20677 Mm.240627 NM_009238 ENSMUSG00000076431 Sox4 AA682046|Sox-4 - 13 A3.1|13 12.87 cM SRY (sex determining region Y)-box 4 protein-coding 53289 630D9T7 - - - DNA segment, 630D9T7 (Roswell Park) unknown 102465174 NR_105760 ENSMUSG00000099257 Mir6342 Gm27268|mmu-mir-6342 - 1|1 A5 microRNA 6342 ncRNA 103080 Mm.346842 NM_001024910 ENSMUSG00000019917 Sept10 4921515A04Rik|9430099J10Rik|AA408298|AI874685 - 10|10 B4 septin 10 protein-coding 207911 Mm.323523 NM_145132 ENSMUSG00000050164 Mchr1 AW049955|Gpr24|Mch1r - 15|15 E1 melanin-concentrating hormone receptor 1 protein-coding 105247211 Gm42349 - - 4|4 predicted gene, 42349 ncRNA 108277 Igk-V8-22ps - - - immunoglobulin kappa chain variable 8 (V8)-22, pseudogene pseudo 212670 Mm.384318 NM_153075 ENSMUSG00000033486 Catsper2 - - 2|2 E5 cation channel, sperm associated 2 protein-coding 12175 Mm.159777 NM_016787 ENSMUSG00000011958 Bnip2 5730523P12Rik|BNIP2beta|Nip21 - 9|9 D BCL2/adenovirus E1B interacting protein 2 protein-coding 72231 Mm.443265 XR_378049 ENSMUSG00000107368 1700018A23Rik Gm42574 - 6|6 F3 RIKEN cDNA 1700018A23 gene ncRNA 23812 B292G21T - - - DNA segment B292-G-21-T unknown 667077 Gm8445 EG667077 - 8 A4|8 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene pseudo 75590 Mm.16479 NM_029352 ENSMUSG00000031383 Dusp9 Dusp4|Mpk4|Pyst3 - X|X A7.3 dual specificity phosphatase 9 protein-coding 320596 Mm.246990 A830039H05Rik - - 19|19 RIKEN cDNA A830039H05 gene protein-coding 56748 Mm.23809 NM_020045 ENSMUSG00000029993 Nfu1 0610006G17Rik|CGI-33|Hirip5 - 6|6 D1 NFU1 iron-sulfur cluster scaffold protein-coding 52552 Mm.274466 NM_027272 ENSMUSG00000021725 Parp8 2810430O08Rik|ARTD16|D13Ertd275e - 13 D2.3|13 65.32 cM poly (ADP-ribose) polymerase family, member 8 protein-coding 53112 ER87F16 - - - DNA segment, ER87F16 unknown 50786 Mm.252561 NM_015819 ENSMUSG00000062184 Hs6st2 6OST2 - X|X A5 heparan sulfate 6-O-sulfotransferase 2 protein-coding 72388 Mm.35290 NM_023663 ENSMUSG00000005251 Ripk4 2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4 - 16|16 C4 receptor-interacting serine-threonine kinase 4 protein-coding 104159 Epa1 Epa-1 - - epidermal antigen 1 protein-coding 58799 Mm.290085 NM_021449 ENSMUSG00000005362 Crbn 2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL - 6|6 E1 cereblon protein-coding 73575 Mm.179463 NR_045045 ENSMUSG00000102096 1700101O22Rik - - 12|12 A1.1 RIKEN cDNA 1700101O22 gene ncRNA 237096 Gm4918 EG237096 - X|X F2 actin, beta pseudogene pseudo 108167561 XR_001778718 Gm46059 - - 8 E2|8 predicted gene, 46059 ncRNA 78148 Mm.243918 NR_130994 8430430B14Rik - - 17|17 E4 RIKEN cDNA 8430430B14 gene ncRNA 102634031 XR_382872 Gm31715 - - 13 D2.1|13 predicted gene, 31715 ncRNA 258484 Mm.377528 NM_146491 ENSMUSG00000063583 Olfr1410 MOR208-2 - 1|1 D olfactory receptor 1410 protein-coding 105243453 XR_870917 LOC105243453 - - 9 D 60S ribosomal protein L38 pseudogene pseudo 102637451 Gm16139 - - 16|16 10.26 cM predicted gene 16139 pseudo 12942 Mm.308500 NM_009960 ENSMUSG00000102206 Pcdha11 A830022B16Rik|Cnr7|Crnr7 - 18|18 B2-B3 protocadherin alpha 11 protein-coding 225887 Mm.44227 NM_144870 ENSMUSG00000059734 Ndufs8 BC021616|CI-23kD|TYKY - 19|19 A NADH dehydrogenase (ubiquinone) Fe-S protein 8 protein-coding 12511 Mm.290897 NM_009852 ENSMUSG00000024670 Cd6 - - 19 A|19 7.16 cM CD6 antigen protein-coding 234740 Mm.87513 NM_001033321 ENSMUSG00000031951 Tmem231 4932417I16Rik|Gm178 - 8|8 E1 transmembrane protein 231 protein-coding 26889 Mm.254027 NM_012000 ENSMUSG00000026317 Cln8 mnd - 8 A1.1|8 7.59 cM ceroid-lipofuscinosis, neuronal 8 protein-coding 62331 DXMit146a DXMit146 - X 37.29 cM DNA segment, Chr X, Massachusetts Institute of Technology 146a protein-coding 17775 Mm.30071 NM_008640 ENSMUSG00000020585 Laptm4a AA286466|LAPTM4|MTP|Mtrp|mKIAA0108 - 12|12 A1.1 lysosomal-associated protein transmembrane 4A protein-coding 12796 Mm.3834 NM_009921 ENSMUSG00000038357 Camp CAP18|Cnlp|Cramp|FALL39|MCLP - 9 F2|9 59.8 cM cathelicidin antimicrobial peptide protein-coding 112237 Gct3 - - 15 29.03 cM granulosa cell tumorigenesis 3 unknown 102902673 Mm.426069 NM_001290127 ENSMUSG00000096370 Gm21992 Rbm14-rbm4 - 19 A|19 predicted gene 21992 protein-coding 100384879 Gm17826 - - 7 A2|7 9.15 cM ribosomal protein L7A pseudogene pseudo 12816 Mm.3819 NM_007730 ENSMUSG00000032332 Col12a1 - - 9 E1|9 43.82 cM collagen, type XII, alpha 1 protein-coding 231655 Mm.95479 NM_145209 ENSMUSG00000041827 Oasl1 7530414C13Rik|oasl9 - 5|5 F 2'-5' oligoadenylate synthetase-like 1 protein-coding 102640212 Gm16214 - - 9|9 23.56 cM predicted gene 16214 ncRNA 100036311 Crhr1taq3 - - - Crhr1 transcript abundance QTL 3 unknown 102637854 XR_388949 LOC102637854 - - 11 C uncharacterized LOC102637854 ncRNA 21968 Mm.1967 NM_011622 ENSMUSG00000042870 Tom1 - - 8|8 C1 target of myb1 trafficking protein protein-coding 102640460 Gm36516 - - 17|17 predicted gene, 36516 pseudo 103724 Mm.28140 NM_134023 ENSMUSG00000034412 Tbc1d10a AI447804|EPI64|Tbc1d10|mFLJ00288 - 11|11 A1 TBC1 domain family, member 10a protein-coding 70147 Mm.17618 NR_038157 ENSMUSG00000092570 Plut 2210019I11Rik - 5|5 G3 PDX1 associated lncRNA, upregulator of transcription ncRNA 258450 Mm.271378 NM_146458 ENSMUSG00000089892 Olfr1199 MOR230-8 - 2|2 E1 olfactory receptor 1199 protein-coding 100035485 Bmc3 - - - bone mineral content 3 unknown 100036035 Ftm4 - - - total body fat tissue mass 4 unknown 111956 Iap3rc18 - - - intracisternal A-type particle, U3 region, SINE repeat c-18 other 67070 Mm.276503 NM_025948 ENSMUSG00000066568 Lsm14a 2700023B17Rik|AA407828|AU017544|Tral|mRAP55A - 7|7 B1 LSM14A mRNA processing body assembly factor protein-coding 170767 Mm.185735 NM_133231 ENSMUSG00000036615 Rfxap 5730495K23Rik - 3|3 C regulatory factor X-associated protein protein-coding 12287 Mm.4424 NM_007579 ENSMUSG00000004113 Cacna1b AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B) - 2 A3|2 16.58 cM calcium channel, voltage-dependent, N type, alpha 1B subunit protein-coding 100504070 Mm.402459 XR_105531 ENSMUSG00000113410 Gm20043 - - 13 A1|13 5.39 cM predicted gene, 20043 ncRNA 18970 Mm.123211 NM_011130 ENSMUSG00000031536 Polb A430088C08Rik - 8 A2|8 11.42 cM polymerase (DNA directed), beta protein-coding 100417109 Gm18401 - - 6|6 B1 vomeronasal 2, receptor 121 pseudogene pseudo 666725 Gm8257 EG666725 - 14|14 C1 AY358078 pseudogene pseudo 102631869 XR_386171 Gm30093 - - 18 B3|18 predicted gene, 30093 ncRNA 100043355 Scgb1b10 Abpa10|Gm4384 - 7 B1|7 secretoglobin, family 1B, member 10 protein-coding 404417 Olfr712-ps1 GA_x5J8B7W6B6J-1784824-1783474 - 7|7 E3 olfactory receptor 712, pseudogene 1 pseudo 102640831 XR_390210 Gm36806 - - 4 E2|4 predicted gene, 36806 ncRNA 62898 D10Mit230 - - 10 45.28 cM DNA segment, Chr 10, Massachusetts Institute of Technology 230 unknown 70646 Mm.275688 NM_027492 ENSMUSG00000036282 Naa30 4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12 - 14|14 C1 N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 100034850 Pcir4 - - 17 17.25 cM periosteal circumference 4 unknown 19546 Rb(4.14)11Tu Rb11Tu - - Robertsonian translocation, Chr 4 and 14, Tubingen 11 other 100503484 Gm19719 - - 5|5 89.18 cM predicted gene, 19719 ncRNA 105244610 XR_001780262 Gm40198 - - 11 B5|11 predicted gene, 40198 ncRNA 17143 Mm.377099 NM_020281 Magea7-ps Mage-a7|Magea7 - X A7.3|X 38.3 cM melanoma antigen, family A, 7, pseudogene pseudo 102636737 Mm.384127 NR_155500 Gm33727 - - 17 A3.3|17 predicted gene, 33727 ncRNA 67311 Mm.480682 NM_026086 ENSMUSG00000053916 Nanp 1600031M04Rik|Hdhd4 - 2|2 G3 N-acetylneuraminic acid phosphatase protein-coding 20714 Mm.291569 NM_011458 ENSMUSG00000058207 Serpina3k 1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin - 12 E|12 53.99 cM serine (or cysteine) peptidase inhibitor, clade A, member 3K protein-coding 227648 Mm.206371 NM_153125 ENSMUSG00000026924 Sec16a AU024582|C230052J16Rik - 2|2 A3 SEC16 homolog A, endoplasmic reticulum export factor protein-coding 216011 Mm.136116 NM_153542 ENSMUSG00000037151 Lrrc20 BC036304 - 10|10 B4 leucine rich repeat containing 20 protein-coding 102632304 Gm30415 - - 8|8 predicted gene, 30415 ncRNA 320308 Mm.31274 A130013F12Rik - - 4|4 RIKEN cDNA A130013F12 gene protein-coding 108167977 LOC108167977 - - 12 A1.1 60S ribosomal protein L36a-like pseudo 269643 Mm.41694 NM_172994 ENSMUSG00000029120 Ppp2r2c 6330548O06Rik|IMYPNO|IMYPNO1|PR52 - 5|5 B3 protein phosphatase 2, regulatory subunit B, gamma protein-coding 75633 1700007A02Rik - - - RIKEN cDNA 1700007A02 gene protein-coding 386626 Mm.425832 Zfp640 Mzf6d - 13 B3|13 zinc finger protein 640 protein-coding 102637469 LOC102637469 - - X C1 mitochondrial import receptor subunit TOM20 homolog pseudogene pseudo 102633622 XR_865902 Gm31406 - - 1 H6|1 predicted gene, 31406 ncRNA 100417362 Gm18561 - - 7|7 F3 TAR (HIV) RNA binding protein 2 pseudogene pseudo 102640082 XR_375844 Gm36237 - - 3 F2.1|3 predicted gene, 36237 ncRNA 258263 Mm.377399 NM_207155 ENSMUSG00000095286 Olfr117 MOR256-33 - 17|17 B1 olfactory receptor 117 protein-coding 105244872 XR_872695 Gm40403 - - 12 B1|12 predicted gene, 40403 ncRNA 111706 Mpmv13 Mpmv-13 - - modified polytropic murine leukemia virus 13 other 68083 Mm.24789 NM_026550 ENSMUSG00000038683 Pak1ip1 5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1 - 13|13 A3.3 PAK1 interacting protein 1 protein-coding 100502777 XM_003084522 Gm38422 - - 2 H3|2 predicted gene, 38422 protein-coding 102637889 Mm.421257 XR_382710 ENSMUSG00000114273 Gm34585 - - 13 C3|13 predicted gene, 34585 ncRNA 108479 Ms87 MMS87 - - minisatellites detected by probe MMS87 other 665149 Sox5os5 EG665149|Gm7518 - 6|6 G3 SRY (sex determining region Y)-box 5, opposite strand 5 protein-coding 68272 Mm.40802 NM_026650 ENSMUSG00000029701 Rbm28 2810480G15Rik|AI503051 - 6|6 A3.3 RNA binding motif protein 28 protein-coding 27951 D14Nds5 - - - DNA segment, Chr 14, Nuffield Department of Surgery 5 unknown 732534 Gt(pU21)77Imeg Ayu21-77|GtAyu21-77 - - gene trap 77, Institute of Molecular Embryology and Genetics unknown 102637215 Mm.445946 Gm20647 - - 5|5 38.44 cM predicted gene 20647 ncRNA 140495 Mopkd1 MOP1 - 4 28.7 cM modifier of polycystic kidney disease progression 1 unknown 666809 Gm8302 EG666809 - 18|18 B3 ribosomal protein S2 pseudogene pseudo 102632179 XR_386556 Gm28347 - - 19 A|19 predicted gene 28347 ncRNA 99774 Mm.445092 AL023079 - - - expressed sequence AL023079 protein-coding 105247265 Gm42393 - - 7|7 predicted gene, 42393 ncRNA 104385 Asc1 Asc-1 - - anterior suture cataract 1 unknown 62100 D11Mit84 - - 11 19.82 cM DNA segment, Chr 11, Massachusetts Institute of Technology 84 unknown 73100 Mm.467885 NR_027891 2900092D14Rik - - 1|1 B RIKEN cDNA 2900092D14 gene ncRNA 75261 Mm.417814 4930551L18Rik - - 4|4 RIKEN cDNA 4930551L18 gene protein-coding 108537 Ms13-33 Ms13-Hf17 - - minisatellite 13-33 detected by M13 phage probe other 57737 Mm.327419 NM_021300 ENSMUSG00000071771 Rhox4b 5430432L21Rik|Ehox|Rhox4.2|Rhox4a - X|X A3.3 reproductive homeobox 4B protein-coding 620551 XM_011251129 ENSMUSG00000094172 LOC620551 - - 5|5 C3.3 PRAME family member 8-like protein-coding 102632430 Mm.474375 NR_110508 Gm30505 - - 16 B1|16 predicted gene, 30505 ncRNA 57895 Mm.32416 NM_175098 ENSMUSG00000050786 Ccdc126 6330407D12Rik|AA675040|AI465320|AL022711 - 6|6 B2.3 coiled-coil domain containing 126 protein-coding 78283 Mm.160079 NM_001081124 ENSMUSG00000041020 Map7d2 1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2 - X|X F4 MAP7 domain containing 2 protein-coding 69427 Mm.213298 1700016B15Rik - - 7|7 RIKEN cDNA 1700016B15 gene protein-coding 102632765 Gm30753 - - 15|15 predicted gene, 30753 ncRNA 62670 D15Mit143 - - 15 19.62 cM DNA segment, Chr 15, Massachusetts Institute of Technology 143 unknown 67102 Mm.37332 NM_025967 ENSMUSG00000022864 D16Ertd472e 1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl - 16 C3.1|16 45.36 cM DNA segment, Chr 16, ERATO Doi 472, expressed protein-coding 258589 Mm.377581 NM_146596 ENSMUSG00000073901 Olfr703 MOR283-7 - 7|7 E3 olfactory receptor 703 protein-coding 102635268 XR_384685 Gm15738 - - 16 A1|16 9.27 cM predicted gene 15738 ncRNA 100416758 Gm14103 - - 2|2 F2 formin binding protein 4 pseudogene pseudo 66960 Mm.34059 NM_024185 ENSMUSG00000026767 Mindy3 1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a - 2|2 A1 MINDY lysine 48 deubiquitinase 3 protein-coding 111760 Iapls1-9 - - - intracisternal A particle, lymphocyte specific 1-9 other 100417533 Gm15136 - - 10|10 A4 trace amine-associated receptor 6 pseudogene pseudo 16649 Mm.30601 NM_008467 ENSMUSG00000027782 Kpna4 1110058D08Rik|IPOA3 - 3|3 E1 karyopherin (importin) alpha 4 protein-coding 102467554 n-TLcag3 n-Tl15 - 1 H3|1 nuclear encoded tRNA leucine 3 (anticodon CAG) tRNA 62802 D14Mit215 - - 14 30.51 cM DNA segment, Chr 14, Massachusetts Institute of Technology 215 unknown 105426 AA517841 - - - expressed sequence AA517841 unknown 102636419 Gm28553 - - Y|Y predicted gene 28553 protein-coding 14879 Gtayu1 - - - gene trap AYU 1 unknown 102634835 Mm.345093 XR_382885 ENSMUSG00000114627 LOC102634835 - - 13 D2.1 uncharacterized LOC102634835 ncRNA 102467609 n-TWcca2 n-Tw2 - 10 C2|10 nuclear encoded tRNA trytophan 2 (anticodon CCA) tRNA 112277 Bis4 - - 7 19.37 cM beta-carboline induced seizures 4 unknown 110039 H59 - - - histocompatibility 59 (2E2) protein-coding 384831 Gm5350 EG384831 - 8|8 B3.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100417804 Gm12419 - - 4|4 C4 predicted gene 12419 pseudo 102465229 NR_105849 ENSMUSG00000106425 Mir873b mmu-mir-873b - 4|4 A5 microRNA 873b ncRNA 78749 Mm.328360 NM_001040397 ENSMUSG00000043336 Filip1l 4631422O05Rik|Doc1 - 16|16 C1.1 filamin A interacting protein 1-like protein-coding 105243566 XR_871345 Gm39454 - - 9 F3|9 predicted gene, 39454 ncRNA 108168093 XR_001780983 Gm46423 - - 13 B3|13 predicted gene, 46423 ncRNA 210562 Gm4766 EG210562 - 17|17 B3 coiled-coil domain containing 94 pseudogene pseudo 664957 Gm7425 EG664957 - 9|9 A1 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 105246121 XR_876115 Gm41462 - - 16 C1.1|16 predicted gene, 41462 ncRNA 107412 Mm.483510 BB143722 - - - expressed sequence BB143722 unknown 16592 Mm.741 NM_010634 ENSMUSG00000027533 Fabp5 E-FABP|Fabpe|Klbp|PA-FABP|mal1 - 3|3 A1 fatty acid binding protein 5, epidermal protein-coding 100042202 Mm.491432 XR_001780121 Gm3718 - - 11 A3.2|11 predicted gene 3718 unknown 73808 Mm.159067 NM_028654 ENSMUSG00000030976 Tex36 4930404H21Rik - 7|7 F3 testis expressed 36 protein-coding 65099 Mm.41415 NM_022986 ENSMUSG00000032251 Irak1bp1 4921528N06Rik|AI851240|Aabp3|Aip70|Simpl - 9|9 E2 interleukin-1 receptor-associated kinase 1 binding protein 1 protein-coding 666766 Gm12955 - - 4|4 D2.1 cyclin H pseudogene pseudo 15183 Mm.20521 NM_010411 ENSMUSG00000024454 Hdac3 AW537363 - 18 19.81 cM|18 B3 histone deacetylase 3 protein-coding 100093715 Mm.417602 Gm10404 - - - predicted gene 10404 unknown 105246779 XR_878736 Gm42017 - - 5 F|5 predicted gene, 42017 ncRNA 100040029 Gm10232 - - 17|17 A1 predicted pseudogene 10232 pseudo 100124338 Traj50 Gm17007 - 14|14 C2 T cell receptor alpha joining 50 other 269629 Mm.371712 NM_029990 ENSMUSG00000106379 Lhfpl3 A930031L14Rik - 5|5 A3 lipoma HMGIC fusion partner-like 3 protein-coding 109280113 LOC109280113 Mm1337 - - VISTA enhancer mm1337 biological-region 231986 Mm.386865 NM_173406 ENSMUSG00000063568 Jazf1 AI591476|C820002C15|Jaz1|Tip27 - 6 B3|6 25.74 cM JAZF zinc finger 1 protein-coding 497109 Ear-ps8 - - 14 C1|14 eosinophil-associated, ribonuclease A family, pseudogene 8 pseudo 105245994 XR_875489 Gm41361 - - 15 E1|15 predicted gene, 41361 ncRNA 111459 Rnr13 - - - rRNA, Chr 13 cluster other 105246302 Gm41606 - - 17|17 predicted gene, 41606 ncRNA 108439 Xmmv60 Xmmv-60|Xp-19 - - xenotropic-MCF leukemia virus 60 other 102632864 Gm29492 - - 7|7 predicted gene 29492 pseudo 56089 Mm.39884 NM_019511 ENSMUSG00000041046 Ramp3 AI850306 - 11 A1|11 4.61 cM receptor (calcitonin) activity modifying protein 3 protein-coding 109837 H43 H-43 - - histocompatibility 43 protein-coding 359863 DXMgc80 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 80 unknown 105244189 XR_866401 Gm39841 - - 2 C2|2 predicted gene, 39841 ncRNA 77688 Mm.260210 9230104K21Rik - - 4|4 RIKEN cDNA 9230104K21 gene protein-coding 100312477 Mm.480246 NM_001167540 ENSMUSG00000046130 Vmn1r184 - - 7|7 A3 vomeronasal 1 receptor, 184 protein-coding 66296 Mm.221900 NM_025475 ENSMUSG00000027285 Haus2 1700101G24Rik|2410007P03Rik|AU020217|Cep27 - 2|2 E5 HAUS augmin-like complex, subunit 2 protein-coding 108625 Iap5rb23 - - - intracisternal A-type particle, U5 region, SINE repeat b-23 other 213454 Gm378 - - X|X D predicted pseudogene 378 pseudo 22628 Mm.233813 NM_018871 ENSMUSG00000051391 Ywhag 14-3-3gamma|D7Bwg1348e - 5|5 G2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide protein-coding 102635438 Gm32777 - - 12|12 predicted gene, 32777 pseudo 20811 Mm.4752 NM_011481 ENSMUSG00000027579 Srms A230069J08Rik|srm - 2 H4|2 103.62 cM src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites protein-coding 73873 Mm.252406 NM_028672 ENSMUSG00000049811 Fam161a 4930430E16Rik - 11|11 A3.2 family with sequence similarity 161, member A protein-coding 11656 Mm.302724 NM_009653 ENSMUSG00000025270 Alas2 ALAS|ALAS-E|ALASE|Alas-2 - X F3|X 68.46 cM aminolevulinic acid synthase 2, erythroid protein-coding 546818 Gm5983 EG546818 - 3|3 H4 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1 pseudogene pseudo 23888 Mm.440025 NM_011821 ENSMUSG00000058571 Gpc6 - - 14|14 E4 glypican 6 protein-coding 100035708 Imab4 - - - intermale aggressive behavior 4 unknown 723892 NR_029790 ENSMUSG00000093011 Mir100 Mirn100|mir-100|mmu-mir-100 - 9|9 A5.1 microRNA 100 ncRNA 100504638 Gm13341 - - 2|2 15.15 cM cytochrome c oxidase subunit 2-like pseudo 102637902 XR_880411 Gm34598 - - 5 C3.3|5 predicted gene, 34598 ncRNA 62770 D16Mit165 - - 16 9.66 cM DNA segment, Chr 16, Massachusetts Institute of Technology 165 unknown 102633508 XR_389133 Gm31318 - - 11 E2|11 predicted gene, 31318 ncRNA 76004 5033430J17Rik - - 15|15 RIKEN cDNA 5033430J17 gene protein-coding 66461 Mm.23926 NM_025576 Ptpmt1 1110001D10Rik|2810004N20Rik|PLIP - 2|2 E1 protein tyrosine phosphatase, mitochondrial 1 protein-coding 100503805 Gm19905 - - 13|13 28.81 cM predicted gene, 19905 ncRNA 67934 Mm.126190 NR_105027 ENSMUSG00000099354 1700124L16Rik - - 6|6 C3 RIKEN cDNA 1700124L16 gene ncRNA 100861471 NR_046118 ENSMUSG00000094720 n-R5s100 Rn5s2 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 100 rRNA 12053 Mm.347398 NM_009744 ENSMUSG00000022508 Bcl6 Bcl5 - 16 B1|16 15.26 cM B cell leukemia/lymphoma 6 protein-coding 78398 Mm.452739 2900002H24Rik - - 1|1 RIKEN cDNA 2900002H24 gene protein-coding 18341 Mm.246536 NM_010984 ENSMUSG00000071522 Olfr263 GA_x5J8B7TTCWC-858-415|IA3|MOR256-31|MOR256-37P|MOR256-61|Olfr263-ps1|Olfr42 - 13|13 A2 olfactory receptor 263 protein-coding 108194 Rpl30-ps4 RpL30-5 - - ribosomal protein L30, pseudogene 4 pseudo 231603 Mm.22836 NM_173766 ENSMUSG00000048215 A630023P12Rik - - 5|5 F RIKEN cDNA A630023P12 gene ncRNA 100048884 Mm.335875 NM_001199333 ENSMUSG00000078674 Mup18 100039228|Gm12561|Mup16|Mup6|Mup9 - 4|4 B3 major urinary protein 18 protein-coding 53999 D16Jhu24 66B19.SP6 - 16 54.38 cM DNA segment, Chr 16, Johns Hopkins University 24 unknown 258432 Mm.377498 NM_146440 ENSMUSG00000056961 Olfr919 MOR171-23 - 9|9 A5.1 olfactory receptor 919 protein-coding 102633984 XR_375777 Gm31677 - - 3 F1|3 predicted gene, 31677 ncRNA 110582 Tcra-V11.3 AV11S3|Va11.3|Va11.3b - - T cell receptor alpha, variable 11.3 other 110473 Tcra-V7.2 - - - T cell receptor alpha, variable 7.2 other 735262 NR_030477 ENSMUSG00000070102 Mir455 Mirn455|mir-455|mmu-mir-455 - 4 B3|4 microRNA 455 ncRNA 16529 Mm.68998 NM_021542 ENSMUSG00000023243 Kcnk5 KCNK5b|TASK-2 - 14|14 A3 potassium channel, subfamily K, member 5 protein-coding 108167892 Gm12095 - - 11 A3.3|11 17.23 cM predicted gene 12095 pseudo 13957 X83313 ESTM4 - - EST X83313 unknown 72727 Mm.259 NM_024256 ENSMUSG00000071649 B3gat3 2810405M13Rik - 19|19 A beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) protein-coding 108168375 XR_001782431 Gm46619 - - 18 B1|18 predicted gene, 46619 ncRNA 68832 Mm.25608 NM_172401 ENSMUSG00000037669 Ldah 1110057K04Rik|mLDAH - 12|12 A1.1 lipid droplet associated hydrolase protein-coding 102639307 Gm35648 - - 5 G3|5 predicted gene, 35648 pseudo 13018 Mm.269474 NM_181322 ENSMUSG00000005698 Ctcf AW108038 - 8|8 D3 CCCTC-binding factor protein-coding 670773 Gm9501 - - 15|15 B3.1 lactate dehydrogenase A pseudogene pseudo 329780 Mm.119000 NR_040553 ENSMUSG00000104553 9330178D15Rik 9330178D15 - 3|3 H4 RIKEN cDNA 9330178D15 gene ncRNA 216853 Mm.31586 NM_144824 ENSMUSG00000041346 Wrap53 BC021790|Wdr79 - 11|11 B3 WD repeat containing, antisense to Trp53 protein-coding 102638256 Gm34862 - - 2|2 predicted gene, 34862 protein-coding 258082 Olfr1027-ps1 MOR198-2P|MOR198-5_p - 2|2 D olfactory receptor 1027, pseudogene 1 pseudo 100036114 Org1 ORG2.1 - 2 74.83 cM organ weight 1 unknown 629747 Mm.234248 NM_001177401 ENSMUSG00000074596 Spint3 Gm14315 - 2 H3|2 serine peptidase inhibitor, Kunitz type, 3 protein-coding 333670 Mm.291320 NM_001037714 ENSMUSG00000050157 Gm867 Gm736 - 10|10 C1 predicted gene 867 protein-coding 105247001 XR_880674 Gm42186 - - 3 A1|3 predicted gene, 42186 ncRNA 102633380 XR_001784864 Gm31216 - - 5 C3.1|5 predicted gene, 31216 ncRNA 105246511 XR_877611 Gm41792 - - 18 E3|18 predicted gene, 41792 ncRNA 102638259 Mm.399133 XR_001782658 ENSMUSG00000093628 Gm20616 - - 19 C1|19 21.18 cM predicted gene 20616 ncRNA 98009 C77534 - - - expressed sequence C77534 protein-coding 100503124 Gm14861 - - X D|X 46.17 cM predicted gene 14861 pseudo 76673 Mm.402126 5330411O13Rik - - 7|7 RIKEN cDNA 5330411O13 gene protein-coding 109656 Lop4 Lop-4 - - lens opacity 4 protein-coding 19541 Rb(4.12)1Tu Rb1Tu - - Robertsonian translocation, Chr 4 and 12, Tubingen 1 other 100041514 Gm3382 - - 6|6 B3 ribosomal protein L7A pseudogene pseudo 66845 Mm.120763 NM_025796 ENSMUSG00000106918 Mrpl33 0610009M10Rik|L33mt|MRP-L33 - 5|5 B1 mitochondrial ribosomal protein L33 protein-coding 108167374 XR_001782015 Gm45968 - - 16 C1.1|16 predicted gene, 45968 ncRNA 102238522 Gm29817 - - 8 D1|8 polymerase (RNA) II (DNA directed) polypeptide K pseudogene pseudo 29807 Mm.320979 NM_013861 ENSMUSG00000029735 Tpk1 - - 6|6 B2.1 thiamine pyrophosphokinase protein-coding 61553 D9Mit154 - - 9 26.42 cM DNA segment, Chr 9, Massachusetts Institute of Technology 154 unknown 102635926 Gm33139 - - 1|1 predicted gene, 33139 ncRNA 105242694 XR_869191 Gm38842 - - 6 C3|6 predicted gene, 38842 ncRNA 105245240 LOC105245240 - - 10 C1 mitochondrial pyruvate carrier 2 pseudogene pseudo 19047 Mm.280784 NM_013636 ENSMUSG00000004455 Ppp1cc PP-1G|PP1|dis2m1 - 5|5 F protein phosphatase 1, catalytic subunit, gamma isoform protein-coding 78354 Mm.58038 NM_144544 ENSMUSG00000037145 2210407C18Rik Ep1 - 11|11 B1.3 RIKEN cDNA 2210407C18 gene protein-coding 320299 Mm.222934 NM_177128 ENSMUSG00000022837 Iqcb1 6820449I09Rik|AV128382|NPHP5 - 16|16 B3 IQ calmodulin-binding motif containing 1 protein-coding 21270 T(7;19)145H T145H - - reciprocal translocation, Chr 7 and 19, Harwell 145 other 791090 Ighv2-6-8 Gm16887 - 12|12 F1 immunoglobulin heavy variable 2-6-8 other 67897 Mm.27544 NM_026440 ENSMUSG00000009535 Rnmt 2610002P10Rik|AI848273|Rg7mt1|mKIAA0398 - 18|18 E2 RNA (guanine-7-) methyltransferase protein-coding 668519 Gm9220 EG668519 - 7|7 B3 predicted gene 9220 pseudo 100502619 Mm.393851 NR_040698 AW046200 - - 8|8 B2 expressed sequence AW046200 ncRNA 68477 Mm.28474 NM_024288 ENSMUSG00000002222 Rmnd5a 1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090 - 6|6 C1 required for meiotic nuclear division 5 homolog A protein-coding 414103 Mm.446579 NR_153817 E230032D23Rik - - - RIKEN cDNA E230032D23 gene ncRNA 780829 Mm.303767 Ighv3-6 Gm16932 - 12|12 F1 immunoglobulin heavy variable 3-6 other 100417604 Gm18709 - - 8|8 E1 mitochondrial ribosomal protein L30 pseudogene pseudo 664936 Gm7413 EG664936 - 10|10 B4 predicted gene 7413 pseudo 102465622 NR_105995 ENSMUSG00000098656 Mir7028 Gm27674|mmu-mir-7028 - 5|5 F microRNA 7028 ncRNA 110181 Xlr1 Xlr-1 - - X-linked lymphocyte-regulated 1 protein-coding 233899 Mm.25220 NM_001033040 ENSMUSG00000057176 Ccdc189 Gm166 - 7|7 F3 coiled-coil domain containing 189 protein-coding 111916 Iapls3-43 - - - intracisternal A particle, lymphocyte specific, probe 3-43 other 109279928 LOC109279928 Mm210 - - VISTA enhancer mm210 biological-region 108167546 Mm.403939 NR_154559 Gm30606 - - 8|8 C5 predicted gene, 30606 ncRNA 62504 D10Mit169 - - 10 9.29 cM DNA segment, Chr 10, Massachusetts Institute of Technology 169 unknown 26411 Mm.148278 NM_008279 ENSMUSG00000037337 Map4k1 Hpk1|mHPK1 - 7|7 B1 mitogen-activated protein kinase kinase kinase kinase 1 protein-coding 791311 Mm.483652 XR_381874 Gm10000 DIGIT|Gm1000 - 12 E|12 predicted gene 10000 ncRNA 381426 Mm.295963 XR_001783618 A430048G15Rik Gm1640 - 2|2 F2 RIKEN cDNA A430048G15 gene unknown 433111 Mm.213441 NR_152153 ENSMUSG00000097727 F630040K05Rik - - 17|17 B3-C RIKEN cDNA F630040K05 gene ncRNA 68528 Mm.441893 NM_001162998 ENSMUSG00000075420 Smim6 1110017F19Rik|Eln - 11|11 E2 small integral membrane protein 6 protein-coding 102634548 Gm32102 - - 5 A3|5 predicted gene, 32102 pseudo 102638073 Gm34723 - - 8|8 predicted gene, 34723 ncRNA 108167376 XR_001782436 LOC108167376 - - 18 B3 uncharacterized LOC108167376 ncRNA 100124367 Traj22 Gm16822 - 14|14 C2 T cell receptor alpha joining 22 other 258504 Mm.377541 NM_146511 ENSMUSG00000063188 Olfr107 MOR156-3 - 17|17 B1 olfactory receptor 107 protein-coding 102633829 XR_385557 Gm31560 - - 17 B1|17 predicted gene, 31560 ncRNA 105246342 Gm41643 - - 17|17 predicted gene, 41643 ncRNA 61916 D4Mit299 - - 4 39.4 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 299 unknown 105242391 XR_868679 Gm38675 - - 5 G2|5 predicted gene, 38675 ncRNA 209100 Gm14380 Gm361|Rpl23a-ps - X|X A1.1 ribosomal protein L23a pseudogene pseudo 102636256 XR_385785 Gm33373 - - 17 E3|17 predicted gene, 33373 ncRNA 98319 Mm.436744 AI326426 - - - expressed sequence AI326426 protein-coding 57750 Mm.281079 NM_021312 ENSMUSG00000026019 Wdr12 4933402C23Rik|Ytm1|Ytm1p - 1|1 C2 WD repeat domain 12 protein-coding 404499 Olfr1327-ps1 - - X|X A7.3 olfactory receptor 1327, pseudogene 1 pseudo 100885839 NR_049200 ENSMUSG00000093763 Mir5626 Gm25590|mir-5626|mmu-mir-5626 - 9|9 D microRNA 5626 ncRNA 100417953 Gm18918 - - 16|16 C3.1 crystallin, zeta (quinone reductase)-like 1 pseudogene pseudo 59090 Mm.143813 NM_021565 ENSMUSG00000035621 Midn 3000003C15Rik - 10|10 C1 midnolin protein-coding 384179 Gm5292 EG384179 - 5|5 B3 ribosomal protein L15 pseudogene pseudo 111346 Cm - - - coloboma deletion region other 108167329 XR_869839 ENSMUSG00000110239 Gm45620 - - 7 E2|7 predicted gene 45620 ncRNA 108168636 Gm38185 - - Y A1|Y predicted gene, 38185 pseudo 637571 Gm7210 EG637571 - 7|7 A1 aurora kinase C pseudogene pseudo 100035573 Hdlq33 - - - HDL QTL 33 unknown 319283 Mm.450403 A430042F24Rik - - 7|7 RIKEN cDNA A430042F24 gene protein-coding 100040297 Gm2695 - - 12 E|12 predicted gene 2695 ncRNA 100316769 NR_130322 ENSMUSG00000078060 Mir466l Mirn466l|mmu-mir-466l - 2 A1|2 8.22 cM microRNA 466l ncRNA 105245431 XR_001780625 Gm40887 - - 12 C3|12 predicted gene, 40887 ncRNA 11305 Mm.2210 NM_007379 ENSMUSG00000026944 Abca2 AI413825|Abc2|D2H0S1474E|mKIAA1062 - 2 A3|2 17.25 cM ATP-binding cassette, sub-family A (ABC1), member 2 protein-coding 217039 Mm.356653 NM_153144 ENSMUSG00000020530 Ggnbp2 AI451896|C75939|D330017P12Rik|DIF-3|Zfp403 - 11|11 C gametogenetin binding protein 2 protein-coding 12828 Mm.389135 NM_007734 ENSMUSG00000079465 Col4a3 [a]3(IV)|alpha3(IV) - 1|1 C5 collagen, type IV, alpha 3 protein-coding 404357 Olfr241-ps1 GA_x5J8B7TWUYY-328-3|GA_x6K02T2KWWJ-24776-25690|MOR179-8_p - 12|12 F2 olfactory receptor 241, pseudogene 1 pseudo 108168883 Mm.39256 XR_001783925 4930481B07Rik - - 3|3 F2.1 RIKEN cDNA 4930481B07 gene ncRNA 329584 Mm.386906 NR_045164 ENSMUSG00000085028 Slc2a4rg-ps C430010C01|Gm14462 - 2|2 H4 Slc2a4 regulator, pseudogene pseudo 108168987 Mm.393596 NR_154553 Gm13205 AA408865 - 4 78.87 cM|4 E2 predicted gene 13205 ncRNA 58184 Mm.291708 NM_021383 ENSMUSG00000026174 Cnot9 2610007F23Rik|AI593551|Fl10|Rqcd1 - 1|1 C3 CCR4-NOT transcription complex, subunit 9 protein-coding 100035525 Ses5 - - - salmonella enteritidis susceptibility 5 unknown 100040851 Mm.478630 NR_028030 ENSMUSG00000039098 Gm9767 - - 10|10 A4 predicted gene 9767 ncRNA 13229 Mm.436573 Defa10 Defcr10 - 8|8 defensin, alpha, 10 protein-coding 97608 C81412 - - - expressed sequence C81412 unknown 100034729 Mm.422946 NM_001082966 ENSMUSG00000079395 Gm15114 Ott-like - X F2|X predicted gene 15114 protein-coding 109909 Zfp55 Zfp-55|zfec23 - - zinc finger protein 55 protein-coding 100042543 Gm3895 - - 14|14 A1 predicted gene 3895 pseudo 170805 Cdcs4 - - - cytokine deficiency colitis susceptibility 4 unknown 319613 Mm.207715 NM_176998 ENSMUSG00000022340 Sybu Golsyn - 15|15 B3.2 syntabulin (syntaxin-interacting) protein-coding 61211 D1Mit178 - - 1 34.26 cM DNA segment, Chr 1, Massachusetts Institute of Technology 178 unknown 19326 Mm.387587 NM_008997 ENSMUSG00000077450 Rab11b A730055L17Rik - 17 B1|17 17.98 cM RAB11B, member RAS oncogene family protein-coding 100418228 Gm17031 - - 12|12 F1 eukaryotic translation initiation factor 3, subunit D pseudogene pseudo 102635137 XR_001784010 Gm32553 - - 3 G3|3 predicted gene, 32553 ncRNA 71692 0710005I21Rik - - - RIKEN cDNA 0710005I21 gene protein-coding 108167341 XR_385899 Gm45950 - - 17 E4|17 predicted gene, 45950 ncRNA 74975 Mm.50498 4930502C17Rik - - 3|3 RIKEN cDNA 4930502C17 gene protein-coding 102632873 XR_376720 Gm30835 Gm42950 - 5 A1|5 predicted gene, 30835 ncRNA 239554 Mm.295605 NM_001017983 ENSMUSG00000016552 Foxred2 A430097D04Rik|D15Bwg0759e|Gm304 - 15 E1|15 36.92 cM FAD-dependent oxidoreductase domain containing 2 protein-coding 56094 Mm.342861 NM_019541 ENSMUSG00000057446 Cts8 CTS2|Epcs68|Epcs70 - 13|13 B2 cathepsin 8 protein-coding 668577 Ighv1-73 EG668577|Gm9253 - 12 F2|12 immunoglobulin heavy variable 1-73 other 102632381 XR_388877 Gm30470 - - 11 B5|11 predicted gene, 30470 ncRNA 547348 Mm.426002 XR_390124 H2-T3-like - - 17|17 MHC class I antigen unknown 258246 Mm.377390 NM_207143 ENSMUSG00000073954 Olfr594 MOR32-10 - 7|7 E3 olfactory receptor 594 protein-coding 108004 Igkv3-1 IgK21-1|Igk-V21-1 - 6|6 C1 immunoglobulin kappa variable 3-1 other 432743 Mm.425797 NM_001013788 Gm5447 EG432743 - 13 A3.2|13 predicted gene 5447 unknown 66488 Mm.422972 NM_025591 ENSMUSG00000057497 Fam136a 2010309E21Rik|AW124904|Hyccin - 6|6 D1 family with sequence similarity 136, member A protein-coding 55935 Mm.489638 NM_018828 ENSMUSG00000008200 Fnbp4 FBP30|Fnbp30|mKIAA1014 - 2|2 E1 formin binding protein 4 protein-coding 329795 Mm.475125 NM_177861 ENSMUSG00000049488 Tmem67 5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo - 4|4 A1 transmembrane protein 67 protein-coding 102632507 XR_384142 Gm30563 - - 15 D1|15 predicted gene, 30563 ncRNA 404331 Mm.377275 NM_207568 ENSMUSG00000110819 Olfr1252 GA_x5J8B7W62NC-992588-991951 - 2|2 E1 olfactory receptor 1252 protein-coding 106096 Mm.279009 BB157357 - - - expressed sequence BB157357 unknown 105246270 XR_876776 Gm41577 - - 17 B1|17 predicted gene, 41577 ncRNA 100417799 Gm18835 - - 14|14 C3 aldo-keto reductase family 1, member B8 pseudogene pseudo 627004 Gm12770 - - 7|7 B1 predicted gene 12770 protein-coding 17386 Mm.5022 NM_008607 ENSMUSG00000050578 Mmp13 Clg|MMP-13|Mmp1 - 9|9 A1 matrix metallopeptidase 13 protein-coding 74613 Mm.472811 4833412C15Rik - - 15|15 RIKEN cDNA 4833412C15 gene protein-coding 78499 Mm.398304 1700109O10Rik - - - RIKEN cDNA 1700109O10 gene protein-coding 114068 Heal4 - - 15 48.65 cM wound healing/regeneration 4 unknown 61090 D7Mit342 - - 7 9.15 cM DNA segment, Chr 7, Massachusetts Institute of Technology 342 unknown 100035695 Bczr3 - - - brain copper/zinc regulation 3 unknown 105247276 Gm42404 - - X|X predicted gene, 42404 ncRNA 62409 D16Mit160 - - 16 3.33 cM DNA segment, Chr 16, Massachusetts Institute of Technology 160 unknown 100035464 Bw26 Bw20 - - body weight QTL 26 unknown 319354 Mm.256058 C530034L13Rik - - 14|14 RIKEN cDNA C530034L13 gene protein-coding 104192 Meng - - - metastic enhancing gene protein-coding 100503708 Gm19849 B020017C02Rik - 3|3 C REX1, RNA exonuclease 1 homolog pseudogene pseudo 66958 Mm.371621 NM_025868 ENSMUSG00000050043 Tmx2 2310042M24Rik|AA589631|Txndc14 - 2|2 D thioredoxin-related transmembrane protein 2 protein-coding 671652 Trav7-1 EG667457|Gm16452 - 14|14 C2 T cell receptor alpha variable 7-1 other 100316703 NR_035476 ENSMUSG00000088606 Mir1951 mir-1951|mmu-mir-1951 - 2 E4|2 58.2 cM microRNA 1951 ncRNA 14240 Mm.7971 NM_008023 ENSMUSG00000056829 Foxb2 Fkh4 - 19 B|19 12.26 cM forkhead box B2 protein-coding 73754 Mm.383241 NM_199042 ENSMUSG00000037214 Thap1 4833431A01Rik|AW490810 - 8|8 A2 THAP domain containing, apoptosis associated protein 1 protein-coding 77090 Mm.440170 NM_029865 ENSMUSG00000002396 Ocel1 9430098E02Rik|AI326022|AI593544 - 8|8 B3.3 occludin/ELL domain containing 1 protein-coding 77210 8030448I15Rik - - 1|1 RIKEN cDNA 8030448I15 gene protein-coding 258679 Mm.271520 NM_146684 ENSMUSG00000046650 Olfr1440 MOR215-1 - 19|19 A olfactory receptor 1440 protein-coding 102637571 XR_386718 Gm34347 - - 19 C3|19 predicted gene, 34347 ncRNA 108168429 XR_001782727 Gm46666 - - 19 C3|19 predicted gene, 46666 ncRNA 117244 Exen1 - - - exencephaly 1 unknown 110253 Mm.123714 NM_138579 ENSMUSG00000033088 Triobp AI428493|EST478828|Tara|mKIAA1662 - 15 E1|15 37.7 cM TRIO and F-actin binding protein protein-coding 69652 Mm.96357 NR_040520 ENSMUSG00000100291 2310069B03Rik - - 6|6 C3 RIKEN cDNA 2310069B03 gene ncRNA 74670 Mm.26540 NM_001025373 ENSMUSG00000053347 Zfp943 4930432O21Rik - 17|17 A3.3 zinc finger prtoein 943 protein-coding 14470 Mm.22473 NM_010261 ENSMUSG00000003380 Rabac1 2310040I06Rik|Gbpap1|PRA1|prenylin - 7|7 A3 Rab acceptor 1 (prenylated) protein-coding 110120386 LOC110120386 - - - VISTA enhancer mm594 biological-region 103336 AU015603 - - - expressed sequence AU015603 protein-coding 55992 Mm.29290 NM_018880 ENSMUSG00000036989 Trim3 BERP1|HAC1|Rnf22 - 7|7 E3 tripartite motif-containing 3 protein-coding 102635030 Gm16016 - - 3|3 27.82 cM predicted gene 16016 pseudo 112140 Bgeq15 - - 16 13.8 cM body growth early QTL 15 unknown 671031 Gm9515 - - 3|3 F2.3 predicted gene 9515 pseudo 260300 Mm.424029 NM_153113 Gm1549 - - X|X A1.1 predicted gene 1549 unknown 237930 Mm.249912 NM_172799 ENSMUSG00000038756 Ttll6 4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59 - 11 D|11 59.48 cM tubulin tyrosine ligase-like family, member 6 protein-coding 235406 Mm.191459 NM_175483 ENSMUSG00000032733 Snx33 E130307J07Rik|Sh3px3 - 9|9 B sorting nexin 33 protein-coding 105242597 XR_868798 Gm38765 - - 6 A1|6 predicted gene, 38765 ncRNA 102640949 XR_381978 Gm36894 - - 12 F1|12 predicted gene, 36894 ncRNA 100503242 Mm.389876 XM_003084678 Scgb2b6 Abpbg6|Gm19607 - 7 B1|7 19.33 cM secretoglobin, family 2B, member 6 protein-coding 16201 Mm.440026 NM_010561 ENSMUSG00000032178 Ilf3 MBII-26|MPHOSPH4|NF90|NFAR - 9 A3|9 7.78 cM interleukin enhancer binding factor 3 protein-coding 66629 Mm.157655 NM_025673 ENSMUSG00000022200 Golph3 4733401N08Rik|5730410D03Rik|AW413496 - 15|15 A1 golgi phosphoprotein 3 protein-coding 320400 Mm.417608 NR_033564 ENSMUSG00000097325 Gm16897 C030002c11rik - 1|1 H6 predicted gene, 16897 ncRNA 105246505 XR_877597 Gm41787 - - 18 E3|18 predicted gene, 41787 ncRNA 100042166 Mm.443286 NR_131166 ENSMUSG00000097321 Gm3704 - - 5 G3|5 predicted gene 3704 ncRNA 105247296 LOC105247296 - - - 40S ribosomal protein S9 pseudogene pseudo 102637443 XR_377701 Gm34249 - - 6 B3|6 predicted gene, 34249 ncRNA 62595 D13Mit117 - - 13 16.81 cM DNA segment, Chr 13, Massachusetts Institute of Technology 117 unknown 78294 Mm.180003 NM_024277 ENSMUSG00000020460 Rps27a 0610006J14Rik|Uba52|Ubb|Ubc - 11|11 A3.3 ribosomal protein S27A protein-coding 56045 Mm.248478 NM_018851 ENSMUSG00000027639 Samhd1 E330031J07Rik|Mg11 - 2|2 H1 SAM domain and HD domain, 1 protein-coding 665762 Mm.469828 Gm7775 EG665762 - 10|10 C1 spermidine synthase pseudogene pseudo 110120411 LOC110120411 - - - VISTA enhancers mm113 and mm769 biological-region 320800 Mm.345095 NM_177264 9230112E08Rik - - 2|2 H4 RIKEN cDNA 9230112E08 gene unknown 102639000 XR_379022 Gm35424 - - 8 B3.1|8 predicted gene, 35424 ncRNA 110287 Ldr1 Ldr-1 - - lactate dehydrogenase regulator 1 protein-coding 67330 Mm.331019 NR_015458 ENSMUSG00000100147 1700047M11Rik - - 1|1 H5 RIKEN cDNA 1700047M11 gene ncRNA 76377 Mm.446627 NM_175239 Gm9734 - - 11|11 E2 predicted gene 9734 unknown 71278 Mm.399564 4933430A20Rik - - 8|8 RIKEN cDNA 4933430A20 gene protein-coding 100418044 Gm12604 - - 4|4 C4 poly(A) binding protein interacting protein 2B pseudogene pseudo 100418463 Gm19228 - - 9|9 E1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide pseudogene pseudo 624862 Gm6532 EG624862 - 14|14 C1 BCL2/adenovirus E1B interacting protein 1, NIP3 pseudogene pseudo 110071 Pad5 - - - MMTV LTR integration site 5 protein-coding 112240 Bhr3 - - 17 2.11 cM bronchial hyperresponsiveness 3 unknown 100312488 Vmn1r-ps21 - - 6|6 B3 vomeronasal 1 receptor, pseudogene 21 pseudo 16021 Igh-8 - - - immunoglobulin heavy chain 8 (heavy chain of IgG3) other 79362 Mm.154529 NM_024469 ENSMUSG00000030256 Bhlhe41 6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1 - 6 G3|6 77.7 cM basic helix-loop-helix family, member e41 protein-coding 70457 2610303G11Rik - - 9|9 E3.3 RIKEN cDNA 2610303G11 gene protein-coding 102637958 XR_387340 Gm34641 - - 1 E2.3|1 predicted gene, 34641 ncRNA 77083 Mm.243789 3010023C09Rik - - 2|2 RIKEN cDNA 3010023C09 gene protein-coding 16525 Mm.10800 NM_008430 ENSMUSG00000033998 Kcnk1 AI788889|TWIK-1 - 8|8 E2 potassium channel, subfamily K, member 1 protein-coding 74320 Mm.277705 NM_028866 ENSMUSG00000024400 Wdr33 1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146 - 18|18 B1 WD repeat domain 33 protein-coding 102632126 Gm30280 - - 1 H6|1 predicted gene, 30280 pseudo 93896 Mm.118883 NM_175681 ENSMUSG00000049928 Glp2r 9530092J08Rik|GLP-2 - 11|11 B3 glucagon-like peptide 2 receptor protein-coding 606528 Gm6060 EG606528|Ppia-ps1_109.1 - 1|1 A3 peptidylprolyl isomerase A pseudogene 1_109.1 pseudo 108169205 XR_001785462 LOC108169205 - - 6 F1 uncharacterized LOC108169205 ncRNA 629057 Gm6944 EG629057 - 18|18 D3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 259172 Mm.227110 NM_147126 ENSMUSG00000034739 Mfrp rd6 - 9 A5.1|9 24.6 cM membrane frizzled-related protein protein-coding 414118 Mm.364383 XR_383294 Zmiz1os1 C130026E14|D930049A15Rik|Zmiz1as1 - 14 A3|14 Zmiz1 opposite strand 1 unknown 108167680 XR_001779272 Gm46129 - - 9 F1|9 predicted gene, 46129 ncRNA 105246971 XR_880595 Gm42160 - - 5 F|5 predicted gene, 42160 ncRNA 387231 NR_029600 ENSMUSG00000065402 Mir122 Mir122a|Mirn122a|mir-122|mmu-mir-122 - 18|18 E1 microRNA 122 ncRNA 665672 Gm7743 EG665672 - X|X A5 calmodulin 2 pseudogene pseudo 18451 Mm.2212 NM_011030 ENSMUSG00000019916 P4ha1 AL022634|P4ha - 10|10 B4 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide protein-coding 19210 Mm.281464 NM_008959 ENSMUSG00000021518 Ptdss1 AU044268|AW539008|PSS-1|mKIAA0024 - 13 B3|13 34.54 cM phosphatidylserine synthase 1 protein-coding 665766 Gm7776 EG665766 - 1|1 D proteasome (prosome, macropain) 28 subunit, alpha pseudogene pseudo 102633367 Gm31209 - - 12|12 predicted gene, 31209 ncRNA 102634441 XR_386331 Gm32022 - - 18 E2|18 predicted gene, 32022 ncRNA 257814 Olfr1003-ps1 GA_x5J8B7W531T-1558688-1559570 - 2|2 D olfactory receptor 1003, pseudogene 1 pseudo 319515 A030011A13Rik - - 10|10 RIKEN cDNA A030011A13 gene protein-coding 667221 Mup-ps3 Gm12810 - 4|4 B3 major urinary protein, pseudogene 3 pseudo 77365 9430083B18Rik - - 1|1 RIKEN cDNA 9430083B18 gene protein-coding 53758 D0H2S3 D2S3h - - DNA segment, human D2S3 protein-coding 102631905 XR_380597 ENSMUSG00000112433 Gm30122 - - 10 C1|10 predicted gene, 30122 ncRNA 71236 Mm.414817 NM_027730 ENSMUSG00000009070 Rsph14 4933431K05Rik|Rtdr1 - 10 B5.3-C1|10 radial spoke head homolog 14 (Chlamydomonas) protein-coding 76432 Mm.261738 NR_040265 ENSMUSG00000097354 2310001H17Rik AI646108 - 6|6 F3 RIKEN cDNA 2310001H17 gene ncRNA 111884 Iap5ra4 - - - intracisternal A-type particle, U5 region, SINE repeat a-4 other 61685 D6Mit271 - - 6 20.52 cM DNA segment, Chr 6, Massachusetts Institute of Technology 271 unknown 210992 Mm.284649 NM_145376 ENSMUSG00000021608 Lpcat1 2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11 - 13|13 C1 lysophosphatidylcholine acyltransferase 1 protein-coding 100039542 Mm.411979 XR_387659 Tbx3os1 Gm2301|Gm38692 - 5 F|5 T-box 3, opposite strand 1 unknown 100417123 Gm18408 - - 1|1 H3 lines homolog 2 pseudogene pseudo 102634408 Gm31996 - - 12|12 predicted gene, 31996 ncRNA 665271 Mm.425514 XR_105188 ENSMUSG00000109623 Gm7562 EG665271|Gm45421 - 8|8 A1.1 predicted gene 7562 ncRNA 666914 XM_986980 Gm8359 EG666914 - 4|4 D2.2 predicted gene 8359 protein-coding 436545 Trav15-2-dv6-2 Gm13926|Trav15-2/dv6-2 - 14 C2|14 T cell receptor alpha variable 15-2-DV6-2 other 102636589 Gm15807 - - 16 A1|16 9.67 cM predicted gene 15807 pseudo 102633463 XR_383536 Gm31281 - - 14 D1|14 predicted gene, 31281 ncRNA 102633473 XR_373745 Gm31289 - - 1 H4|1 predicted gene, 31289 ncRNA 112327 Wg3 - - - weight gain in high growth mice 3 unknown 257662 Mm.484725 NM_146262 ENSMUSG00000095809 Olfr1290 MOR248-9 - 2|2 E3 olfactory receptor 1290 protein-coding 68117 Mm.161014 NM_026565 ENSMUSG00000025525 Apool 6720473G16Rik|9430083G14Rik|E130106L15Rik - X|X E1 apolipoprotein O-like protein-coding 108168468 XM_017318673 ENSMUSG00000095659 LOC108168468 - - X A3.2 spindlin-2A-like protein-coding 102467467 n-TRccg3 n-Tr9 - 13 A2|13 nuclear encoded tRNA arginine 3 (anticodon CCG) tRNA 102636550 Mm.155746 XR_378431 Gm33586 Gm45404 - 7 F1|7 predicted gene, 33586 ncRNA 56404 Mm.208379 NM_019797 ENSMUSG00000032386 Trip4 4930558E03Rik|ASC-1|Asc1|BB191711 - 9|9 C thyroid hormone receptor interactor 4 protein-coding 12959 Mm.40324 NM_021351 ENSMUSG00000066975 Cryba4 - - 5|5 F crystallin, beta A4 protein-coding 100416385 Gm18090 - - 18|18 E3 USP6 N-terminal like pseudogene pseudo 100417013 Gm18361 - - 13|13 D2.3 phospholipid scramblase 3 pseudogene pseudo 19404 Rare2 - - - retinoic acid response element 2 other 319734 Mm.440773 NM_001033382 ENSMUSG00000041460 Cacna2d4 5730412N02Rik|BE686333 - 6|6 F1 calcium channel, voltage-dependent, alpha 2/delta subunit 4 protein-coding 76687 Mm.86437 NM_029701 ENSMUSG00000054408 Spcs3 1810011E08Rik|SPC22/23 - 8|8 B1.3 signal peptidase complex subunit 3 homolog (S. cerevisiae) protein-coding 100039191 Mm.430746 Gm2090 - - 12 D2-D3|12 predicted gene 2090 unknown 108167798 XR_001779732 Gm46215 - - 10 A3|10 predicted gene, 46215 ncRNA 16497 Mm.316402 NM_010597 ENSMUSG00000027827 Kcnab1 Akr8a8|Kvbeta1.1|mKv(beta)1 - 3 E1|3 30.15 cM potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein-coding 108167406 XR_001778038 LOC108167406 - - 7 A1 uncharacterized LOC108167406 ncRNA 116923 D13Jde10 - - - DNA segment, Chr 13, Jan Deussing 10 unknown 53787 D0Tu17 D17Tu17 - - DNA segment, Tubingen 17 unknown 98511 Mm.25871 AU014756 - - - expressed sequence AU014756 protein-coding 100035111 Nba4 - - - New Zealand Black autoimmunity 4 unknown 170725 Mm.189201 NM_130890 ENSMUSG00000038599 Capn8 nCL-2|nCL-2' - 1|1 H5 calpain 8 protein-coding 546397 XM_017318682 Gm5947 EG546397 - X|X F3 predicted pseudogene 5947 protein-coding 100034996 Bdmsq - - - body mass QTL unknown 17223 Mm.437339 NR_028284 ENSMUSG00000115592 Mcpt-ps1 MMCP-(Y)1|Mmcpy1 - 14 C3|14 mast cell protease, pseudogene 1 pseudo 53875 Ear9 mR9 - - eosinophil-associated, ribonuclease A family, member 9 protein-coding 239789 Mm.326909 NM_001013761 ENSMUSG00000068428 Gmnc Gemc1|Gm1778|Gm606 - 16|16 B2 geminin coiled-coil domain containing protein-coding 433125 Rpl21-ps6 EG433125|Gm5495 - 17|17 D ribosomal protein L21, pseudogene 6 pseudo 112352684 LOC112352684 - - - mitochondrial ribosomal protein S16 pseudogene pseudo 668405 Rpl26-ps3 EG668405|Gm9152 - 12|12 F1 ribosomal protein L26, pseudogene 3 pseudo 319978 Mm.446587 A130099P19Rik - - 10|10 RIKEN cDNA A130099P19 gene protein-coding 109950 Apk - - - acid phosphatase, kidney protein-coding 105242609 XR_868822 Gm38777 - - 6 A3.1|6 predicted gene, 38777 ncRNA 52917 Mm.482175 D17Ph5e - - - DNA segment, Chr 17, Institute for Molecular Genetics, Praha-5 expressed unknown 102634688 XR_375986 Gm32216 - - 3 G1|3 predicted gene, 32216 ncRNA 436008 XM_017312477 Gm5737 EG436008 - 7|7 F2 predicted gene 5737 protein-coding 624395 Gm6501 EG624395 - 19|19 A NS1-associated protein 1 pseudogene pseudo 108816 Mm.440578 NM_178649 4933409K07Rik AV071682|b1402 - 4|4 A5 RIKEN cDNA 4933409K07 gene pseudo 28164 DYzEms21 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 21 unknown 102633042 Mm.215416 NR_155765 Gm30963 - - 10 C2|10 predicted gene, 30963 ncRNA 74293 Mm.381252 NR_152110 ENSMUSG00000085407 1700095J03Rik - - 7|7 E3 RIKEN cDNA 1700095J03 gene ncRNA 258931 Mm.223330 NM_146929 ENSMUSG00000050478 Olfr807 MOR117-1 - 10|10 D3 olfactory receptor 807 protein-coding 100041250 XM_006514353 ENSMUSG00000094120 Gm3233 - - 10 C1|10 predicted gene 3233 protein-coding 102638025 XR_390904 Gm34693 - - 4 D3|4 predicted gene, 34693 ncRNA 67170 Mm.119489 NR_028298 ENSMUSG00000100164 2610306M01Rik - - 6|6 D1 RIKEN cDNA 2610306M01 gene ncRNA 100042819 Mm.389054 Gm4047 - - 5 A1|5 predicted gene 4047 ncRNA 100417457 Gm18619 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 665239 Mm.26856 NR_033689 Gm7550 EG665239|Gm666 - 12|12 C1 predicted gene 7550 ncRNA 100417645 Gm18734 - - 17|17 B1 vacuolar protein sorting 52 pseudogene pseudo 105513 Mm.159637 NM_134078 ENSMUSG00000034190 Chmp7 4930596K11Rik|6330407G04Rik|AI450338|AW550775 - 14|14 D2 charged multivesicular body protein 7 protein-coding 68147 Mm.24873 NM_026578 ENSMUSG00000028010 Gar1 AA409823|AI326794|C430047J18Rik|Nola1 - 3|3 G3 GAR1 ribonucleoprotein protein-coding 100852392 Gm21056 - - 12 E|12 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 2 pseudo 18132 Mm.173813 NM_010929 ENSMUSG00000015468 Notch4 Int-3|Int3|N4 - 17 B1|17 18.15 cM notch 4 protein-coding 75982 5033415L01Rik - - 7|7 RIKEN cDNA 5033415L01 gene protein-coding 20586 Mm.286593 NM_011417 ENSMUSG00000032187 Smarca4 BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo - 9 A3|9 7.84 cM SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding 102639711 Mm.32052 XR_376934 Gm35959 - - 5 B3|5 predicted gene, 35959 ncRNA 70593 Mm.158412 NR_038163 ENSMUSG00000086126 Evx1os 5730457N03Rik|Evx1as - 6|6 B3 even skipped homeotic gene 1, opposite strand ncRNA 105245975 XR_875404 Gm41344 - - 15 D3|15 predicted gene, 41344 ncRNA 75479 Mm.381620 NR_015573 ENSMUSG00000110424 1700012D14Rik - - 7|7 E3 RIKEN cDNA 1700012D14 gene ncRNA 432800 XR_873890 Gm5454 EG432800 - 13|13 D1 predicted gene 5454 pseudo 380702 Mm.351764 NM_001034874 ENSMUSG00000053930 Shisa6 Gm879|ckamp52 - 11|11 B3 shisa family member 6 protein-coding 102636055 XR_386597 Gm38486 - - 19 B|19 predicted gene, 38486 ncRNA 100534342 Gm21033 - - 7|7 B4 predicted gene, 21033 pseudo 102638537 XR_387597 Hnf1aos1 Gm13824 - 5 F|5 55.99 cM HNF1 homeobox A, opposite strand 1 ncRNA 62068 D10Mit45 - - 10 19.42 cM DNA segment, Chr 10, Massachusetts Institute of Technology 45 unknown 108169189 XR_001785432 Gm46984 - - 6 B2.1|6 predicted gene, 46984 ncRNA 735309 NR_030452 ENSMUSG00000076146 Mir449c Mirn449b|Mirn449c|mir-449c - 13 D2.2|13 microRNA 449c ncRNA 100463512 Mm.461086 NM_001190732 ENSMUSG00000096887 Gm20594 Mtrnr2l - 6 C3|6 35.01 cM predicted gene, 20594 protein-coding 102638386 XR_384311 Gm34965 - - 15 E2|15 predicted gene, 34965 ncRNA 105243045 XR_869916 Gm15774 - - 7 F2|7 64.97 cM predicted gene 15774 ncRNA 108168758 Mm.260754 XR_001783306 LOC108168758 - - 2 C1.1 uncharacterized LOC108168758 ncRNA 208258 Mm.152952 NM_144790 ENSMUSG00000047034 Ankrd33 A930021G21Rik|Panky|Panky-a - 15|15 F1 ankyrin repeat domain 33 protein-coding 105243405 XR_870729 ENSMUSG00000111359 Gm39336 - - 9 A5.3|9 predicted gene, 39336 ncRNA 320348 C130051F05Rik - - 13|13 RIKEN cDNA C130051F05 gene protein-coding 237411 NM_172789 ENSMUSG00000062931 Zfp938 B230315N10Rik - 10 C1|10 zinc finger protein 938 protein-coding 66359 Mm.489720 NM_025511 ENSMUSG00000026500 Cox20 2310005N03Rik|Fam36a - 1|1 H4 COX20 Cox2 chaperone protein-coding 110740343 Hs-3'beta2 - - 7 E3 beta2-globin 3' enhancer biological-region 544927 LOC544927 - - 13|13 A4 uncharacterized LOC544927 protein-coding 15158 Hc9 Cen9 - - heterochromatin, Chr 9 other 110120441 LOC110120441 - - - VISTA enhancer mm1599 biological-region 16998 Mm.182396 NM_008520 ENSMUSG00000024940 Ltbp3 Ltbp2|mFLJ00070 - 19 A|19 4.34 cM latent transforming growth factor beta binding protein 3 protein-coding 667460 Gm8644 EG667460 - X|X F4 predicted gene 8644 pseudo 102633924 XR_382749 Gm31630 - - 13 C3|13 predicted gene, 31630 ncRNA 105246564 Gm41837 - - 19|19 predicted gene, 41837 ncRNA 67013 Mm.30021 NM_025909 ENSMUSG00000035069 Oma1 2010001O09Rik|MPRP-1|ZMPOMA1 - 4|4 C6 OMA1 zinc metallopeptidase protein-coding 19519 Rb(3.12)4Mpl Rb4Mpl - - Robertsonian translocation, Chr 3 and 12, Montpellier 4 other 319566 D030034A15Rik - - 10|10 RIKEN cDNA D030034A15 gene protein-coding 100048966 Gofm1 - - - gonadal fat mass 1 unknown 627503 Gm6764 EG627503 - 17|17 E5 PWP1 homolog pseudogene pseudo 56436 Mm.316654 NM_019822 ENSMUSG00000039041 Adrm1 1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13 - 2|2 H4 adhesion regulating molecule 1 protein-coding 100048007 Gm20942 - - 16|16 C1.2 predicted gene, 20942 pseudo 100653392 Gm4149 100042986 - 13|13 C1 ribosomal protein L37a pseudogene pseudo 272347 Mm.169059 NM_027477 ENSMUSG00000062519 Zfp398 5730513I23Rik - 6|6 B2.3 zinc finger protein 398 protein-coding 108613 Iap3rc26 - - - intracisternal A-type particle, U3 region, SINE repeat c-26 other 52474 D14Ertd16e - - - DNA segment, Chr 14, ERATO Doi 16, expressed unknown 27714 D1Dau22 - - - DNA segment, Chr 1, DA Underhill 22 unknown 492886 Cd4ts5 - - 12 9.04 cM CD4 T cell subset 5 unknown 102640561 XR_374752 Gm36596 - - 2 D|2 predicted gene, 36596 ncRNA 105244021 Gm39711 - - 11|11 predicted gene, 39711 pseudo 107831 Mm.43133 NM_174991 ENSMUSG00000034730 Adgrb1 B830018M07Rik|Bai1|R75078|mKIAA4089 - 15|15 D3 adhesion G protein-coupled receptor B1 protein-coding 26423 Mm.31387 NM_139051 ENSMUSG00000026751 Nr5a1 Ad4BP|ELP|ELP-3|Ftz-F1|Ftzf1|SF-1|SF1|STF-1 - 2 B|2 24.42 cM nuclear receptor subfamily 5, group A, member 1 protein-coding 228545 Mm.294761 NM_172269 ENSMUSG00000034216 Vps18 9930024E13Rik - 2|2 E5 VPS18 CORVET/HOPS core subunit protein-coding 360090 D17Jcs44 - - - DNA segment, Chr 17, John C. Schimenti 44 unknown 108169155 XR_001785326 Gm46967 - - 6 D1|6 predicted gene, 46967 ncRNA 62611 D13Mit159 - - 13 47.63 cM DNA segment, Chr 13, Massachusetts Institute of Technology 159 unknown 105246947 Gm42140 - - 5|5 predicted gene, 42140 ncRNA 627022 Gm6728 EG627022 - 6|6 G1 coenzyme Q2 homolog, prenyltransferase pseudogene pseudo 102642841 Gm38638 - - 9 B|9 predicted gene, 38638 pseudo 330491 Cyp2a21-ps EG330491 - 7|7 A3 cytochrome P450, family 2, subfamily a, polypeptide 21, pseudogene pseudo 111067 Odc-rs3 BRS-3|Odc-3 - - ornithine decarboxylase, related sequence 3 pseudo 624698 Gm6523 - - 5 E3|5 predicted gene 6523 protein-coding 20324 Mm.398690 NM_138741 ENSMUSG00000045954 Cavin2 Sdpr - 1|1 C1.1 caveolae associated 2 protein-coding 16280 In(4)1By In1By - - inversion, Chr 4, Bailey 1 other 233489 Mm.235175 NM_146194 ENSMUSG00000039361 Picalm CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114 - 7 D3-E1|7 50.47 cM phosphatidylinositol binding clathrin assembly protein protein-coding 100036128 Eac5 - - - ethyl alcohol consumption QTL 4 unknown 235674 Mm.379402 NM_146230 ENSMUSG00000010651 Acaa1b - - 9|9 F3 acetyl-Coenzyme A acyltransferase 1B protein-coding 17613 Ms35 MMS35 - - minisatellites detected by probe MMS35 other 111814 Iapls1-16 - - - intracisternal A particle, lymphocyte specific 1-16 other 171180 Mm.262270 NM_134164 ENSMUSG00000049303 Syt12 - - 19|19 A synaptotagmin XII protein-coding 414085 Mm.256223 NR_033222 ENSMUSG00000097061 9330151L19Rik - - 12|12 C2 RIKEN cDNA 9330151L19 gene ncRNA 53691 D0Rp6 RP6 - - DNA segment, Roswell Park 6 unknown 116606 D7Tem4 - - - DNA segment, Chr 7, Tempel 4 unknown 100093674 Trnak-uuu - - - transfer RNA lysine (anticodon UUU) tRNA 105247098 XR_881139 Gm42257 - - 4 A2|4 predicted gene, 42257 ncRNA 97791 C77734 - - - expressed sequence C77734 unknown 622552 Mm.375036 NR_046022 ENSMUSG00000110016 Gm20751 - - 13|13 A4 predicted gene, 20751 ncRNA 102631663 XR_386660 Gm29946 - - 19 C1|19 predicted gene, 29946 ncRNA 229543 Mm.268564 NM_145540 ENSMUSG00000027933 Ints3 C77668 - 3|3 F1 integrator complex subunit 3 protein-coding 100379660 Gm9806 - - - predicted gene 9806 unknown 108187 Rpl7-ps4 - - - ribosomal protein L7, pseudogene 4 pseudo 105243189 XR_870427 Gm39178 - - 8 B1.2|8 predicted gene, 39178 ncRNA 68228 Mm.69399 1700095K22Rik - - - RIKEN cDNA 1700095K22 gene protein-coding 140887 Mm.272203 NM_080795 ENSMUSG00000016520 Lnx2 9630046H24|AW209022 - 5|5 G3 ligand of numb-protein X 2 protein-coding 102632993 XR_378490 Gm30928 Gm45142 - 7 F3|7 predicted gene, 30928 ncRNA 100503380 Mm.482118 NR_038073 ENSMUSG00000097769 Snhg4 Gm17457 - 18 B2|18 19.14 cM small nucleolar RNA host gene 4 ncRNA 382740 Gm11307 - - 13|13 A3.1 predicted gene 11307 pseudo 100417782 Gm18822 - - 3|3 A1 predicted gene, 18822 pseudo 69424 Mm.396179 1700016F12Rik - - 5|5 RIKEN cDNA 1700016F12 gene protein-coding 61079 D2Mit426 - - 2 2.74 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 426 unknown 100124684 Trbv19 Gm16780|Tcrb-V6 - 6 19.27 cM|6 B1 T cell receptor beta, variable 19 other 102638944 XR_387263 Gm35381 - - 1 D|1 predicted gene, 35381 ncRNA 100040643 Gm12443 - - 4|4 B1 predicted gene 12443 pseudo 11636 Mm.29189 NM_021515 ENSMUSG00000026817 Ak1 Ak-1|B430205N08Rik - 2 B|2 22.09 cM adenylate kinase 1 protein-coding 19598 Rb(6.18)2Dn Rb2Dn - - Robertsonian translocation, Chr 6 and 18, Davisson 2 other 208628 Mm.441089 NM_001042421 ENSMUSG00000029414 Kntc1 D330012D13|jgl - 5|5 F kinetochore associated 1 protein-coding 100041420 XM_011244594 Gm3325 AU016916 - 13 B3|13 predicted gene 3325 protein-coding 777661 Ighd4-1 Gm16877 - 12|12 F1 immunoglobulin heavy diversity 4-1 other 108167852 XR_001780102 LOC108167852 - - 11 B5 uncharacterized LOC108167852 ncRNA 381546 Mm.440118 NM_001034876 ENSMUSG00000078588 Ccdc24 Gm1028 - 4|4 D2.1 coiled-coil domain containing 24 protein-coding 492847 Pbbcp1 - - 1 51.5 cM peripheral blood B cell percentage 1 unknown 19063 Mm.277719 NM_008917 ENSMUSG00000028657 Ppt1 9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT - 4 D2.2|4 57.27 cM palmitoyl-protein thioesterase 1 protein-coding 229550 Mm.98335 NM_001101461 ENSMUSG00000091175 9130204L05Rik Gm127 - 3|3 F1 RIKEN cDNA 9130204L05 gene protein-coding 492839 Cdcs10 - - 5 47.29 cM cytokine deficiency colitis susceptibility 10 unknown 56527 Mm.154614 NM_019945 ENSMUSG00000053693 Mast1 9430008B02Rik|SAST|SAST170 - 8 C3|8 41.32 cM microtubule associated serine/threonine kinase 1 protein-coding 110854 Mm.275393 NM_138748 ENSMUSG00000039515 Ptpa 2610042B21Rik|C77440|N28142|PR53|Ppp2r4 - 2 B|2 21.71 cM protein phosphatase 2 protein activator protein-coding 22353 Mm.98916 NM_011702 ENSMUSG00000019772 Vip - - 10|10 A1 vasoactive intestinal polypeptide protein-coding 11744 Mm.294083 NM_013469 ENSMUSG00000021866 Anxa11 A830099O17Rik|Anx11 - 14 A3|14 15.06 cM annexin A11 protein-coding 21887 Mm.24255 NM_009389 ENSMUSG00000032280 Tle3 2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547 - 9|9 B transducin-like enhancer of split 3 protein-coding 70009 Mm.458581 NM_023546 ENSMUSG00000095302 Ssty2 1700029H17Rik|pc11 - Y|Y C3 spermiogenesis specific transcript on the Y 2 protein-coding 665974 Vmn2r-ps103 EG665974|Gm7872 - 13 B3|13 vomeronasal 2, receptor, pseudogene 103 pseudo 60751 D2Mit22 - - 2 74.83 cM DNA segment, Chr 2, Massachusetts Institute of Technology 22 unknown 110480 Tcra-V5.2 - - - T cell receptor alpha, variable 5.2 other 102638009 XR_384715 Gm34679 - - 16 A3|16 predicted gene, 34679 ncRNA 621001 Rpl19-ps6 EG621001|Gm6196|Rpl19-ps - 15|15 A1 ribosomal protein L19, pseudogene 6 pseudo 100035590 Hdl38 - - 7 22.44 cM HDL level 38 unknown 102634325 XR_386360 Gm31933 - - 18 E3|18 predicted gene, 31933 ncRNA 101055670 XM_006516452 Heatr4 Gm17673 - 12 D1|12 38.98 cM HEAT repeat containing 4 protein-coding 62336 D19Mit98 - - 19 23.13 cM DNA segment, Chr 19, Massachusetts Institute of Technology 98 unknown 52728 Mm.453140 D17Zt10e - - - DNA segment, Chr 17, Zdenek Trachtulec 10 expressed unknown 319650 Mm.397875 XR_106226 ENSMUSG00000086851 A430108G06Rik - - 11|11 B1.3 RIKEN cDNA A430108G06 gene ncRNA 108168106 XR_001781017 Gm46434 - - 13 C3|13 predicted gene, 46434 ncRNA 100043629 XM_011242029 Gm10013 - - 7|7 F5 predicted gene 10013 protein-coding 28260 D10Jhu52 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 52 unknown 100041266 Gm11372 - - 13|13 A3.2 predicted gene 11372 pseudo 100417541 Gm18675 - - 8|8 A2 mitochondrial ribosomal protein L4 pseudogene pseudo 103806 Mm.51116 NM_175334 ENSMUSG00000050567 Maml1 AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200 - 11|11 B1.3 mastermind like transcriptional coactivator 1 protein-coding 100035288 Bnszq2 - - - bone size QTL 2 unknown 100093680 Trnac-aca - - - transfer RNA cysteine (anticodon ACA) tRNA 100039955 Gm2517 - - 9|9 A2 ATPase, H+ transporting, lysosomal V1 subunit G1 pseudogene pseudo 100503325 Gm19635 - - X|X C3 eukaryotic translation initiation factor 4B pseudogene pseudo 105244292 XR_866728 Gm39931 - - 2 F1|2 predicted gene, 39931 ncRNA 19691 Mm.27407 NM_023042 ENSMUSG00000030243 Recql RecQ1 - 6 G2|6 73.91 cM RecQ protein-like protein-coding 99045 Mm.30057 NM_207207 ENSMUSG00000037740 Mrps26 AI648866|GI008|MRP-S13|MRP-S26|Rpms13 - 2|2 F1 mitochondrial ribosomal protein S26 protein-coding 140795 Mm.439021 NM_133200 ENSMUSG00000036381 P2ry14 A330108O13Rik|Gpr105|P2Y14 - 3 D|3 28.96 cM purinergic receptor P2Y, G-protein coupled, 14 protein-coding 111679 Ms15-5 - - - minisatellite 15-5 detected by probe 33.15 other 28278 D10Jhu78 - - - DNA segment, Chr 10, Johns Hopkins University 78 unknown 19921 Mm.10247 NM_009078 ENSMUSG00000017404 Rpl19 - - 11|11 D ribosomal protein L19 protein-coding 209707 Mm.71498 NM_172153 ENSMUSG00000015882 Lcorl Mlr1 - 5|5 B3 ligand dependent nuclear receptor corepressor-like protein-coding 12715 Mm.2375 NM_007710 ENSMUSG00000030399 Ckm CPK-M|Ckmm|M-CK|MCK - 7 A3|7 9.67 cM creatine kinase, muscle protein-coding 333424 Mm.297753 NM_001077424 ENSMUSG00000037953 A4gnt AV080780|Alpha4gnt|Gm798 - 9|9 E3.3 alpha-1,4-N-acetylglucosaminyltransferase protein-coding 67528 Mm.27889 NM_024437 ENSMUSG00000031767 Nudt7 1300007B24Rik|2210404C19Rik - 8|8 E1 nudix (nucleoside diphosphate linked moiety X)-type motif 7 protein-coding 112100 Bmd1 - - 1 67.71 cM bone mineral density 1 unknown 61081 D2Mit428 - - - DNA Segment, Chr 2, Massachusetts Institute of Technology 428 unknown 621486 Rpl31-ps2 Gm6231 - 13|13 C1 ribosomal protein L31, pseudogene 2 pseudo 100036302 Tcdel2 - - - T cell clonal deletion 2 unknown 27657 D1Dau2 - - - DNA segment, Chr 1, DA Underhill 2 unknown 258547 Mm.377563 NM_146554 ENSMUSG00000046041 Olfr803 MOR111-3 - 10|10 D3 olfactory receptor 803 protein-coding 622434 Mm.153974 NM_001081295 ENSMUSG00000036885 Arhgef26 4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF - 3|3 E1 Rho guanine nucleotide exchange factor (GEF) 26 protein-coding 78586 Mm.146236 NM_030133 ENSMUSG00000024135 Srbd1 AI461933|C85414|D530025C17Rik - 17|17 E4 S1 RNA binding domain 1 protein-coding 113874 Vmn1r-ps10 V1r-ps6 - 6|6 B3 vomeronasal 1 receptor, pseudogene 10 pseudo 67277 Mm.450397 XR_868680 2900089D17Rik - - 5|5 G2 RIKEN cDNA 2900089D17 gene ncRNA 105243285 XR_001778651 Gm39248 - - 8 D3|8 predicted gene, 39248 ncRNA 100035740 Giq1 - - - glucose intolerance QTL 1 unknown 102634283 XR_390660 Gm31905 - - 4 C1|4 predicted gene, 31905 ncRNA 102636060 LOC102636060 - - 4 D1 deoxynucleotidyltransferase terminal-interacting protein 1 pseudogene pseudo 108167769 LOC108167769 - - 10 A3 high mobility group protein B1 pseudogene pseudo 66440 Mm.109930 NM_139291 ENSMUSG00000066149 Cdc26 2010012C09Rik - 4|4 B3 cell division cycle 26 protein-coding 102638197 Mm.115721 NR_151522 ENSMUSG00000102661 Gm34816 - - 1 E4|1 predicted gene, 34816 ncRNA 74246 Mm.247946 NM_178389 ENSMUSG00000028671 Gale 2310002A12Rik|AI323962 - 4|4 D3 galactose-4-epimerase, UDP protein-coding 67760 Mm.46754 NM_175121 ENSMUSG00000022462 Slc38a2 5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382 - 15|15 F1 solute carrier family 38, member 2 protein-coding 52415 D4Ertd639e - - - DNA segment, Chr 4, ERATO Doi 639, expressed unknown 75625 Mm.6890 NM_023788 ENSMUSG00000047238 Mageh1 2010107K23Rik|APR-1|APR1 - X|X F3 melanoma antigen, family H, 1 protein-coding 102632999 XR_373854 Gm30932 - - 1 H6|1 predicted gene, 30932 ncRNA 73322 Mm.250457 NR_045315 ENSMUSG00000092369 1700039E22Rik - - 19|19 C3 RIKEN cDNA 1700039E22 gene ncRNA 102637749 LOC102637749 - - 17 B3 40S ribosomal protein S2 pseudogene pseudo 667838 Naip3 Birc1c|EG667838|Mitf|Naip-rs5|pORF1|pORF2 - 13 D1|13 53.13 cM NLR family, apoptosis inhibitory protein 3 pseudo 51897 Mm.28492 NM_145528 ENSMUSG00000027244 Atg13 1110053A20Rik|D2Ertd391e|Harbi1 - 2|2 E1 autophagy related 13 protein-coding 665054 Mm.279568 XR_001782476 D330025C20Rik - - 18|18 E3 RIKEN cDNA D330025C20 gene ncRNA 72104 Mm.443401 NR_045435 ENSMUSG00000100738 2010106C02Rik - - 17|17 E4 RIKEN cDNA 2010106C02 gene ncRNA 76174 6330526H18Rik - - 2|2 RIKEN cDNA 6330526H18 gene protein-coding 102636497 XM_006541326 Gm29258 - - 7 B3|7 predicted gene 29258 protein-coding 105242948 XR_882096 Gm39019 - - 7 B5|7 predicted gene, 39019 ncRNA 100862106 LOC100862106 - - X E3 40S ribosomal protein S12 pseudogene pseudo 241989 Mm.119234 NM_001101479 ENSMUSG00000090919 Pabpc4l C330050A14Rik|EG241989 - 3|3 B poly(A) binding protein, cytoplasmic 4-like protein-coding 330657 Mm.425491 NM_001081268 ENSMUSG00000044139 Prss53 Pol3s|mFLJ00289 - 7|7 F3 protease, serine 53 protein-coding 102640229 Mm.411884 XR_873366 Gm36346 - - 13 A5|13 predicted gene, 36346 ncRNA 432951 Gm5472 EG432951 - 15|15 B3.3 pescadillo homolog 1, containing BRCT domain pseudogene pseudo 102637609 Gm34374 - - 2|2 predicted gene, 34374 ncRNA 108167472 Gm47692 - - 7 A1|7 predicted gene, 47692 pseudo 16874 Mm.12881 NM_008500 ENSMUSG00000026890 Lhx6 Lhx6.1 - 2|2 B LIM homeobox protein 6 protein-coding 100042327 Mm.420743 Gm3793 - - 6 B3|6 predicted gene 3793 unknown 67880 Mm.231091 NM_026428 ENSMUSG00000039450 Dcxr 0610038K04Rik|1810027P18Rik|XR - 11|11 E2 dicarbonyl L-xylulose reductase protein-coding 675416 Gm14506 - - X|X A1.1 predicted gene 14506 pseudo 52259 D9Ertd334e - - 9 24.82 cM DNA segment, Chr 9, ERATO Doi 334, expressed unknown 100043202 Trav3d-3 Gm10892 - 14|14 C2 T cell receptor alpha variable 3D-3 other 105242642 XR_001785226 Gm38800 - - 6 B2.1|6 predicted gene, 38800 ncRNA 68718 Mm.34356 NM_001033142 ENSMUSG00000014470 Rnf166 1110031E24Rik|AW555115|Zfp313l - 8|8 E1 ring finger protein 166 protein-coding 67040 Mm.29644 NM_152806 ENSMUSG00000055065 Ddx17 2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72 - 15|15 E1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 protein-coding 109077 Mm.290474 NM_176843 ENSMUSG00000071652 Ints5 1110055N21Rik|mKIAA1698 - 19|19 A integrator complex subunit 5 protein-coding 320706 Mm.79466 NM_001164663 ENSMUSG00000055485 Soga1 9830001H06Rik|AI426038|D430036N24Rik|Soga - 2|2 H1 suppressor of glucose, autophagy associated 1 protein-coding 240354 Mm.132613 NM_172833 ENSMUSG00000032688 Malt1 A630046N12|D430033E09Rik|Pcasp1 - 18|18 E1 MALT1 paracaspase protein-coding 102467288 n-TCgca52 n-Tc52 - 17 E1.3|17 nuclear encoded tRNA cysteine 52 (anticodon GCA) tRNA 105246081 XR_875943 Gm41428 - - 16 A3|16 predicted gene, 41428 ncRNA 100041429 Gm3332 - - 1|1 E2.1 transmembrane protein 64 pseudogene pseudo 52510 D15Ertd529e - - 15 8.71 cM DNA segment, Chr 15, ERATO Doi 529, expressed unknown 20218 Mm.8256 NM_011317 ENSMUSG00000028790 Khdrbs1 Sam68|p62|p68 - 4|4 D2.2 KH domain containing, RNA binding, signal transduction associated 1 protein-coding 100418399 Gm19184 - - 3|3 H1 alveolar soft part sarcoma chromosome region, candidate 1 pseudogene pseudo 71874 Mm.158766 NM_172411 ENSMUSG00000034159 2310007B03Rik - - 1|1 D RIKEN cDNA 2310007B03 gene protein-coding 65113 Mm.102496 NM_022996 ENSMUSG00000024425 Ndfip1 0610010M22Rik|N4wbp5 - 18|18 B3 Nedd4 family interacting protein 1 protein-coding 258417 Mm.377488 NM_146425 ENSMUSG00000109542 Olfr470 MOR204-22 - 7|7 E3 olfactory receptor 470 protein-coding 493095 Chol11 Cq5 - 9 26.83 cM cholesterol 11 unknown 110507 Ltp-rs - - - liver transport protein, related sequence protein-coding 62072 D10Mit54 - - 10 23.02 cM DNA segment, Chr 10, Massachusetts Institute of Technology 54 unknown 100043787 Rpl36a-ps1 Gm10077 - 14|14 E2.2 ribosomal protein L36A, pseudogene 1 pseudo 111527 Tcra-V5 - - - T cell receptor alpha, variable 5 other 384221 Mm.469879 NM_001104628 ENSMUSG00000091879 Vmn2r17 EG384221 - 5|5 F vomeronasal 2, receptor 17 protein-coding 619323 Mm.425617 NM_001033817 F730021E23Rik - - 10|10 A3 RIKEN cDNA F730021E23 gene unknown 102631624 XR_391279 Gm29919 - - 7 B2|7 predicted gene, 29919 ncRNA 66881 Mm.30849 NM_025823 ENSMUSG00000029998 Pcyox1 1200015P13Rik|AI115532|AI448340|PCL1|Pcly - 6|6 D1 prenylcysteine oxidase 1 protein-coding 105245901 XR_875093 Gm41281 - - 15 B1|15 predicted gene, 41281 ncRNA 671878 XM_001473434 Sms-ps Gm14680 - X A6|X spermine synthase, pseudogene pseudo 94230 Mm.45141 NM_053193 ENSMUSG00000034022 Cpsf1 CPSF160 - 15|15 D3 cleavage and polyadenylation specific factor 1 protein-coding 19123 Mm.2786 NM_008934 ENSMUSG00000024386 Proc PC - 18|18 B1 protein C protein-coding 666599 Gm13216 - - 2|2 A1 ribosomal protein L19 pseudogene pseudo 58860 Mm.36742 NM_021475 ENSMUSG00000022057 Adamdec1 2210414L24Rik|AI574231|Dcsn - 14|14 D1 ADAM-like, decysin 1 protein-coding 21454 Mm.229342 NM_013686 ENSMUSG00000068039 Tcp1 AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63 - 17 A1|17 8.72 cM t-complex protein 1 protein-coding 78461 1700062A02Rik - - 4|4 RIKEN cDNA 1700062A02 gene protein-coding 216705 Mm.169673 NM_001045520 ENSMUSG00000006169 Clint1 AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171 - 11|11 B1.1 clathrin interactor 1 protein-coding 432767 Eif1-ps2 EG432767|Gm5450 - 13|13 B3 eukaryotic translation initiation factor 1, pseudogene 2 pseudo 667552 XM_006516998 Gm8700 Gm190 - 13 A5|13 predicted gene 8700 protein-coding 239368 Mm.211977 NM_173421 ENSMUSG00000044726 Erich5 - - 15|15 B3.1 glutamate rich 5 protein-coding 102467646 n-TGgcc10 n-Tg15 - 8 D3|8 nuclear encoded tRNA glycine 10 (anticodon GCC) tRNA 16061 Mm.246497 Igh-VJ558 AI893585 - 12 F2|12 immunoglobulin heavy chain (J558 family) other 76729 2310001K20Rik - - 7|7 RIKEN cDNA 2310001K20 gene protein-coding 78650 Mm.243767 NR_040493 ENSMUSG00000097398 Platr5 2410088K16Rik - 1|1 D pluripotency associated transcript 5 ncRNA 12487 Mm.255003 NM_007642 ENSMUSG00000026012 Cd28 - - 1 C2|1 30.52 cM CD28 antigen protein-coding 621573 Gm12700 - - 4|4 C6 predicted gene 12700 pseudo 105246325 XR_876986 Gm41626 - - 17 E3|17 predicted gene, 41626 ncRNA 217302 Mm.269127 NM_181749 ENSMUSG00000034677 Gpr142 PGR2 - 11|11 E2 G protein-coupled receptor 142 protein-coding 100035121 Adip10 - - 2 2.23 cM adiposity 10 unknown 105245327 XR_872173 Gm40802 - - 10 D3|10 predicted gene, 40802 ncRNA 105243218 Gm39197 Gm45749 - 8 B3.3|8 predicted gene, 39197 pseudo 105245517 Gm40963 - - 13|13 predicted gene, 40963 ncRNA 71050 Mm.427351 4933404I11Rik - - 7|7 RIKEN cDNA 4933404I11 gene protein-coding 58249 Mm.329656 NM_021438 ENSMUSG00000024911 Fibp 2010004G08Rik|2010005N21Rik|3010027N18Rik - 19|19 A fibroblast growth factor (acidic) intracellular binding protein protein-coding 105243260 Gm39229 - - 8|8 predicted gene, 39229 ncRNA 62903 D10Mit216 - - 10 23.25 cM DNA segment, Chr 10, Massachusetts Institute of Technology 216 unknown 28077 Mm.52583 NM_138596 ENSMUSG00000021598 Med10 AA959813|AI385605|C78613|D13Wsu50e - 13 C1|13 35.55 cM mediator complex subunit 10 protein-coding 15203 Mm.277092 NM_010417 ENSMUSG00000031209 Heph C130006F04Rik|Cpl|mKIAA0698|sla - X C3|X 42.69 cM hephaestin protein-coding 207839 Mm.22969 NM_172451 ENSMUSG00000037280 Galnt6 4632410F13|AW047994|GalNAc-T6 - 15|15 F1 polypeptide N-acetylgalactosaminyltransferase 6 protein-coding 100417215 Gm38420 - - 7|7 A1 crumbs homolog 1 pseudogene pseudo 105244218 XR_866505 Gm39866 - - 2 C3|2 predicted gene, 39866 ncRNA 545487 Gm14439 - - 2|2 H4 predicted gene 14439 protein-coding 110796 Mm.102136 NM_001081300 ENSMUSG00000046982 Tshz1 5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1 - 18 E4|18 57.53 cM teashirt zinc finger family member 1 protein-coding 667914 Igkv3-12 IgK21-12|Igk-V21-12 - 6|6 C1 immunoglobulin kappa variable 3-12 other 100039494 Gm11799 - - 4|4 A1 predicted gene 11799 pseudo 105246927 XR_880449 Gm42122 - - 5 E3|5 predicted gene, 42122 ncRNA 18417 Mm.4425 NM_008770 ENSMUSG00000037625 Cldn11 Claudin-11|Claudin11|Osp|Otm - 3 A3|3 15.14 cM claudin 11 protein-coding 106557447 Mm.484668 NR_132734 LOC106557447 - - 4 C4 uncharacterized LOC106557447 ncRNA 102634937 Gm29166 - - Y|Y predicted gene 29166 ncRNA 98733 Mm.236454 NM_178884 ENSMUSG00000026211 Obsl1 AW822216 - 1|1 C4 obscurin-like 1 protein-coding 79561 BC002245 - - - cDNA sequence BC002245 protein-coding 436219 Gm5760 - - X|X C3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 108169004 LOC108169004 - - 4 C6 60S ribosomal protein L15 pseudogene pseudo 102640322 Gm11973 - - 11|11 4.19 cM predicted gene 11973 ncRNA 101693 Mm.427022 AI854308 - - - expressed sequence AI854308 protein-coding 72495 Mm.382914 NR_038175 ENSMUSG00000085236 2610206C17Rik - - 7|7 D3 RIKEN cDNA 2610206C17 gene ncRNA 100038732 Mm.65345 NR_126070 ENSMUSG00000075437 Gm11681 - - 11 E2|11 predicted gene 11681 ncRNA 27601 D0Dcr6 - - - DNA segment, Derry C. Roopenian 6 unknown 668859 Gm13983 - - 2|2 E5 aldo-keto reductase family 1, member B3 pseudogene pseudo 100418179 Gm19056 - - 12|12 A3 meteorin, glial cell differentiation regulator-like pseudogene pseudo 100861498 NR_046151 ENSMUSG00000096765 n-R5s144 Rn5s27 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 144 rRNA 102636845 XR_385480 Gm33801 - - 17 A3.3|17 predicted gene, 33801 ncRNA 61930 D5Mit366 - - 5 54.9 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 366 unknown 72886 Mm.22796 NM_028381 ENSMUSG00000003208 Ccdc94 2900016D05Rik|AI413813 - 17|17 D coiled-coil domain containing 94 protein-coding 101055725 Gm29718 - - 1 E4|1 hydroxymethylbilane synthase pseudogene pseudo 492935 Vent1 Vent8a - - ventricular size 1 unknown 100035003 Lfq1 - - - live fetuses QTL 1 unknown 100502579 Gm19261 - - 19|19 8.44 cM predicted gene, 19261 ncRNA 16164 Mm.24208 NM_133990 ENSMUSG00000017057 Il13ra1 AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4 - X A3.3|X 20.49 cM interleukin 13 receptor, alpha 1 protein-coding 117109 Mm.24636 NM_026398 ENSMUSG00000060152 Pop5 1500019J17Rik|2700077E03Rik|AW049989|Rnasep3 - 5|5 F processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae) protein-coding 100043864 Scgb1b26-ps Abpa26-ps|Gm12759 - 7|7 B1 secretoglobin, family 1B, member 26, pseudogene protein-coding 105246829 Gm42053 - - 8|8 predicted gene, 42053 ncRNA 81535 Mm.280199 NM_030750 ENSMUSG00000021054 Sgpp1 AI463453|SPP|SPP1|Spph1 - 12|12 C3 sphingosine-1-phosphate phosphatase 1 protein-coding 105247050 XM_011249800 Gm42226 - - 5 A3|5 predicted gene, 42226 protein-coding 97136 C77438 - - - expressed sequence C77438 protein-coding 100039801 Mm.471595 NM_001111318 ENSMUSG00000061974 Cldn24 Gm10107 - 8|8 B1.1 claudin 24 protein-coding 93834 Mm.296457 NM_033602 ENSMUSG00000021846 Peli2 AW047589|BB129927 - 14 C1|14 24.6 cM pellino 2 protein-coding 387517 Tas2r111-ps2 T2R11|mps2 - 6|6 G1 taste receptor, type 2, member 111, pseudogene 2 pseudo 102640295 XR_387100 LOC102640295 - - X F4 uncharacterized LOC102640295 ncRNA 61395 D5Mit143 - - 5 89.8 cM DNA segment, Chr 5, Massachusetts Institute of Technology 143 unknown 85199 D13Mit235 - - 13 2.36 cM DNA segment, Chr 13, Massachusetts Institute of Technology 235 unknown 668918 Gm14111 - - 2|2 G1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 21177 T(4;16)31Ad T31Ad - - reciprocal translocation, Chr 4 and 16, Adler 31 other 19458 Rb(10.11)8Bnr Rb8Bnr - - Robertsonian translocation, Chr 10 and 11, Universitat Bonn/Rhein 8 other 100035640 Tsiq1 Tsi1 - 7 64.3 cM T cell secretion of IL4 QTL 1 unknown 108167354 XR_001778963 Gm45958 - - 1 C3|1 predicted gene, 45958 ncRNA 19800 Rn4.5s-ps1 - - 1 E2.1|1 4.5s RNA, pseudogene 1 pseudo 75975 5033424D13Rik - - 12|12 RIKEN cDNA 5033424D13 gene protein-coding 100038589 Mm.363099 Gm10744 - - 10 D2|10 predicted gene 10744 unknown 102636754 XR_377087 Gm33738 - - 5 G1.3|5 predicted gene, 33738 ncRNA 100628627 NR_039570 ENSMUSG00000093278 Mir5110 mmu-mir-5110 - 11 C|11 51.34 cM microRNA 5110 ncRNA 100417189 Gm18440 - - X|X A7.1 crumbs homolog 1 pseudogene pseudo 211147 Mm.54257 NM_177597 ENSMUSG00000022269 March11 9630025C22 - 15|15 B1 membrane-associated ring finger (C3HC4) 11 protein-coding 102634658 Mm.402070 XR_383769 Gm27198 - - 14 E4|14 predicted gene 27198 ncRNA 619846 Igkv5-48 Gm10881 - 6|6 C1 immunoglobulin kappa variable 5-48 other 108167588 LOC108167588 - - 8 A2 40S ribosomal protein S7 pseudogene pseudo 99686 Mm.38082 NR_040387 ENSMUSG00000093738 AI606473 - - 3 H4|3 expressed sequence AI606473 ncRNA 105246994 XR_880631 Gm42182 - - X A3.1|X predicted gene, 42182 ncRNA 107854 Tel10p - - - telomeric sequence, Chr 10, centromere end protein-coding 664987 NM_001085546 ENSMUSG00000078905 Gm14393 - - 2|2 H4 predicted gene 14393 protein-coding 100036141 Cocia14 - - 18 45.63 cM cocaine induced activation 14 unknown 105242390 Gm38674 - - 2|2 predicted gene, 38674 ncRNA 108169119 XR_001785051 Gm46944 - - 5 B1|5 predicted gene, 46944 ncRNA 16000 Mm.268521 NM_010512 ENSMUSG00000020053 Igf1 C730016P09Rik|Igf-1|Igf-I - 10 C1|10 43.7 cM insulin-like growth factor 1 protein-coding 100040962 Mm.428601 Gm3065 - - 15 B3.1|15 predicted gene 3065 protein-coding 214305 Mm.36423 NM_001044380 ENSMUSG00000021260 Hhipl1 1600002O04Rik|AK129450|mKIAA1822 - 12|12 F1 hedgehog interacting protein-like 1 protein-coding 62398 D18Mit116 - - 18 9.88 cM DNA segment, Chr 18, Massachusetts Institute of Technology 116 unknown 56491 Mm.260456 NM_019806 ENSMUSG00000054455 Vapb AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b - 2 H4|2 97.37 cM vesicle-associated membrane protein, associated protein B and C protein-coding 80696 Del(7)Tyr-p 3YPSd - - deletion, Chr 7, Tyr c-3YPSd, proximal other 330086 Mm.254449 NM_177871 ENSMUSG00000105912 Gm10440 D130065D13 - 5 C1|5 predicted gene 10440 ncRNA 102640791 XR_386654 Gm36774 - - 19 C1|19 predicted gene, 36774 ncRNA 18260 Mm.4807 NM_008756 ENSMUSG00000021638 Ocln AI503564|Ocl - 13 D1|13 53.23 cM occludin protein-coding 66592 Mm.331565 NM_023231 ENSMUSG00000028455 Stoml2 0610038F01Rik|MSLP2|SLP-2 - 4|4 A5 stomatin (Epb7.2)-like 2 protein-coding 723865 NR_029958 ENSMUSG00000065427 Mir429 Mirn429|mir-429|mmu-mir-429 - 4|4 E2 microRNA 429 ncRNA 69881 XR_877329 2010320O07Rik - - 18|18 B3 RIKEN cDNA 2010320O07 gene ncRNA 111550 Pmv37 Pmv-37 - - polytropic murine leukemia virus 37 other 276809 Gm11624 - - 11|11 E1 microtubule-associated protein pseudogene pseudo 99890 Mm.36115 NM_178891 ENSMUSG00000049300 Prmt6 AW124876|BB233495|Hrmt1l6 - 3|3 F3 protein arginine N-methyltransferase 6 protein-coding 545198 Mm.405776 LOC545198 - - 17|17 B1 uncharacterized LOC545198 protein-coding 67139 Mm.28227 NM_025993 ENSMUSG00000040599 Mis12 2510025F08Rik|AU044651|Misc12 - 11|11 B4 MIS12 kinetochore complex component protein-coding 100504653 Mm.233461 XR_106426 ENSMUSG00000106157 4930555A03Rik 2210404B08Rik - 3|3 H3 RIKEN cDNA 4930555A03 gene unknown 105243156 XR_870298 Gm39154 Gm45491 - 8 A3|8 predicted gene, 39154 ncRNA 75965 Mm.29044 NM_029492 ENSMUSG00000021969 Zdhhc20 4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11 - 14|14 C3 zinc finger, DHHC domain containing 20 protein-coding 100036474 Pbrbc2 - - - peripheral blood RBC 2 unknown 100042567 Gm3905 - - 1|1 E4 predicted gene 3905 pseudo 102635218 Gm21869 - - Y|Y predicted gene, 21869 protein-coding 100042831 Gm14868 - - X|X D predicted gene 14868 protein-coding 105244579 XR_867726 Gm40172 - - 3 H2|3 predicted gene, 40172 ncRNA 102465892 NR_106179 ENSMUSG00000098863 Mir8101 Gm27705|mmu-mir-8101 - 11|11 D microRNA 8101 ncRNA 100041077 Mm.482724 NM_001085419 ENSMUSG00000073723 Gm13102 - - 4|4 E1 predicted gene 13102 protein-coding 104245 Mm.207053 NM_148931 ENSMUSG00000039728 Slc6a5 Glyt2|prestin - 7|7 B4 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 protein-coding 102635562 XR_389036 ENSMUSG00000087581 Gm11571 - - 11 D|11 63.39 cM predicted gene 11571 ncRNA 108169137 XR_001785216 Gm46956 - - 6 A3.3|6 predicted gene, 46956 ncRNA 21180 T(4;19)1Ad T1Ad - - reciprocal translocation, Chr 4 and 19, Adler 1 other 69826 Mm.273404 NM_023529 ENSMUSG00000024731 Ms4a10 2010001N17Rik - 19|19 A membrane-spanning 4-domains, subfamily A, member 10 protein-coding 60835 D4Mit90 - - 4 23.17 cM DNA segment, Chr 4, Massachusetts Institute of Technology 90 unknown 77733 Mm.291906 NM_029965 ENSMUSG00000013878 Rnf170 6720407G21Rik|AI481227 - 8|8 A2 ring finger protein 170 protein-coding 71597 Mm.158735 NM_027837 ENSMUSG00000031621 Isx 9130012O13Rik|Pix-1 - 8|8 C1 intestine specific homeobox protein-coding 108321 Hrs1 Hrs-1 - - mouse minor satellite DNA 1 other 71860 Mm.441823 NM_027963 ENSMUSG00000020904 Cfap52 1700019F09Rik|4933417B11Rik|WDRPUH|Wdr16 - 11|11 B3 cilia and flagella associated protein 52 protein-coding 52193 Mm.352759 D15Ertd50e - - 15 7.78 cM DNA segment, Chr 15, ERATO Doi 50, expressed unknown 105242717 XR_869266 Gm38860 - - 6 D1|6 predicted gene, 38860 ncRNA 100417945 Gm20951 - - 6|6 G1 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene pseudo 75239 Mm.381688 NR_045978 ENSMUSG00000110009 4930543E12Rik 4930545H14Rik - 7|7 F1 RIKEN cDNA 4930543E12 gene ncRNA 102634234 Gm31866 - - 8|8 predicted gene, 31866 protein-coding 100035836 Arigg7 - - - anti-RBC IgG antibodies 7 unknown 11682 Mm.311854 NM_007439 ENSMUSG00000055471 Alk CD246|Tcrz - 17 E1.3|17 43.77 cM anaplastic lymphoma kinase protein-coding 105246351 XR_877103 Gm41651 - - 17 E4|17 predicted gene, 41651 ncRNA 102632427 Gm30502 - - 8 A1.1|8 predicted gene, 30502 pseudo 606532 Gm6063 EG606532|Ppia-ps6_731.1 - 6|6 C1 peptidylprolyl isomerase A pseudogene 6_731.1 pseudo 665140 Gm7513 EG665140 - 17 A3.2|17 farnesyl diphosphate synthetase pseudogene pseudo 102632658 Mm.135723 LOC102632658 - - - uncharacterized LOC102632658 ncRNA 110158 Si-r Suc-1 - - sucrase isomaltase, regulatory protein-coding 52771 D4Wsu188e - - - DNA segment, Chr 4, Wayne State University 188, expressed unknown 623270 Gm15130 - - 2|2 E3 predicted gene 15130 protein-coding 108168746 Mm.402605 XR_001783283 Gm10829 - - 2|2 B predicted gene 10829 ncRNA 100832 AU022537 - - - expressed sequence AU022537 protein-coding 108168736 XR_001783222 Gm46728 - - 2 A1|2 predicted gene, 46728 ncRNA 68929 Mm.41355 NM_030037 ENSMUSG00000037221 Mospd3 1190005J19Rik|5133401H10Rik|Gtig2|R124 - 5 G2|5 76.59 cM motile sperm domain containing 3 protein-coding 654836 Trav12-3 EG667790|Gm14498 - 14 27.44 cM|14 C2 T cell receptor alpha variable 12-3 other 73547 Mm.159027 NM_028568 ENSMUSG00000025043 Dusp21 1700094E07Rik|DSP21 - X|X A1.2 dual specificity phosphatase 21 protein-coding 108169026 XR_001784794 Gm43132 - - 5 A1|5 predicted gene 43132 ncRNA 71931 Mm.443434 Ift88os 2310043D23Rik - 14|14 intraflagellar transport 88, opposite strand protein-coding 62537 D11Mit174 - - 11 25.18 cM DNA segment, Chr 11, Massachusetts Institute of Technology 174 unknown 359979 DXMgc116 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 116 unknown 52572 D11Ertd379e - - - DNA segment, Chr 11, ERATO Doi 379, expressed unknown 100418095 Gm18995 - - 6|6 F3 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 105245078 XR_871281 Gm40580 - - 9 F3|9 predicted gene, 40580 ncRNA 62306 D1Mit208 - - 1 89.54 cM DNA segment, Chr 1, Massachusetts Institute of Technology 208 unknown 21936 Mm.3180 NM_009400 ENSMUSG00000041954 Tnfrsf18 AITR|Gitr - 4|4 E2 tumor necrosis factor receptor superfamily, member 18 protein-coding 545843 Gm5876 EG545843|Ppia-ps6_651.1 - 6|6 C1 peptidyl-prolyl cis-trans isomerase A pseudogene 6_651.1 pseudo 100417630 Gm14994 - - X|X F1 presenilin associated, rhomboid-like pseudogene pseudo 62203 D15Mit81 - - 15 7.78 cM DNA segment, Chr 15, Massachusetts Institute of Technology 81 unknown 244653 Mm.444803 NM_172916 ENSMUSG00000059854 Hydin 1700034M11Rik|4930545D19Rik|4932703P14|672398|A830061H17|AC069308.21gm4|Gm9558|hy-3|hy3|hyrh - 8 D3|8 57.5 cM HYDIN, axonemal central pair apparatus protein protein-coding 110817 Tstap198-13 D13Crc1|P198-13|P198r - - tissue specific transplantation antigen P198-13 protein-coding 360212 Mm.271558 NM_183036 ENSMUSG00000053790 Defb38 BD-38 - 8|8 A1.3 defensin beta 38 protein-coding 74536 9030409C19Rik - - 17|17 E1.1 RIKEN cDNA 9030409C19 gene protein-coding 100038387 Gm10473 - - - predicted gene 10473 unknown 112183 Skts8 - - 1 65.12 cM skin tumor susceptibility 8 unknown 108169055 LOC108169055 - - 5 E2 activated RNA polymerase II transcriptional coactivator p15 pseudogene pseudo 100416952 Hmgb1-ps6 Gm15695|Hmg-1RI-A|Hmg-F|Hmg1-rs7|Hmgb1-rs7 - 16|16 B2 high mobility group box 1, pseudogene 6 pseudo 27521 272I21T - - - DNA segment, 272I21T unknown 668668 NM_001081036 Gm9294 EG668668 - 7|7 B3 ribosomal protein S4, X-linked pseudogene pseudo 70135 2310043P16Rik - - 7|7 RIKEN cDNA 2310043P16 gene protein-coding 61784 D3Mit241 - - 3 30.51 cM DNA segment, Chr 3, Massachusetts Institute of Technology 241 unknown 258225 Mm.335071 NM_001011523 ENSMUSG00000059189 Olfr913 MOR165-10|MOR165-9P - 9|9 A5.1 olfactory receptor 913 protein-coding 257819 Olfr1291-ps1 GA_x5J8B7W4T2P-95628-96096|Olfr1291 - 2|2 E3 olfactory receptor 1291, pseudogene 1 pseudo 100040558 BE691133 - - 4 D3|4 expressed sequence BE691133 unknown 68437 1200009P19Rik - - - RIKEN cDNA 1200009P19 gene protein-coding 100035980 Advh4 - - - adenovirus induced hyperthyroidism 4 unknown 102632113 XM_011244863 ENSMUSG00000096183 LOC102632113 - - 14 A1 uncharacterized LOC102632113 protein-coding 637748 Rpl21-ps8 EG637748|Gm7218 - 18|18 E3 ribosomal protein L21, pseudogene 8 pseudo 108168547 XM_017318737 ENSMUSG00000101158 LOC108168547 - - Y A2 X-linked lymphocyte-regulated protein PM1-like protein-coding 57780 Mm.41770 NM_022007 ENSMUSG00000036578 Fxyd7 1110035I01Rik - 7|7 B1 FXYD domain-containing ion transport regulator 7 protein-coding 20133 Mm.197486 NM_009103 ENSMUSG00000030978 Rrm1 RnrM1 - 7 E3|7 54.72 cM ribonucleotide reductase M1 protein-coding 56150 Mm.489653 NM_019499 ENSMUSG00000029910 Mad2l1 AA673185|MAD2 - 6 C1|6 30.56 cM MAD2 mitotic arrest deficient-like 1 protein-coding 100036167 Chcmq2 - - 9 26.83 cM mean cell hemoglobin concentration QTL 2 unknown 68393 Mm.41325 NM_026713 ENSMUSG00000012187 Mogat1 0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2 - 1|1 C4 monoacylglycerol O-acyltransferase 1 protein-coding 14199 Mm.3126 NM_010211 ENSMUSG00000023092 Fhl1 FHL-1|KyoT|RAM14-1|SLIM|SLIM-1 - X|X A6 four and a half LIM domains 1 protein-coding 16387 Is(In;5)1H Is(In?;5)1H|Is1H - - insertion, Chr and 5, Harwell 1 other 102631659 XR_390816 Gm29942 - - 4 D2.3|4 predicted gene, 29942 ncRNA 109565 Sig - - - sightless unknown 407789 Mm.436576 NM_001033485 BC048644 - - 8|8 E1 cDNA sequence BC048644 protein-coding 102633554 XR_374884 Gm31351 - - 2 E4|2 predicted gene, 31351 ncRNA 208820 Mm.12057 NM_173746 ENSMUSG00000055963 Triqk C130086A10|Gm11818 - 4 A1|4 triple QxxK/R motif containing protein-coding 100035292 Asdq2 - - - atrial septal defect QTL 2 unknown 105243737 Mm.421372 XR_878288 Gm15169 - - X F4|X 72.71 cM predicted gene 15169 ncRNA 107536 Bkm5 Bkm-5 - - banded krait minor satellite DNA 5 other 626288 Gm13140 - - 4|4 E1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene pseudo 667147 Rpl7a-ps12 EG667147|Gm8481 - X|X F3 ribosomal protein L7A, pseudogene 12 pseudo 53711 D16Mc1 D16McC1 - - DNA segment, Chr 16, McClelland 1 unknown 104121 Lar - - - low antibody response unknown 106321 AU017796 - - - expressed sequence AU017796 unknown 100126785 Wg2a - - - weight gain in high growth mice 2a unknown 74742 Mm.449771 NM_029082 5830411J07Rik - - 2|2 C2 RIKEN cDNA 5830411J07 gene unknown 54199 Mm.7336 NM_017466 ENSMUSG00000043953 Ccrl2 1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR - 9 F2|9 60.92 cM chemokine (C-C motif) receptor-like 2 protein-coding 53671 D0J8 D2J2 - - DNA segment, Jackson Laboratory 8 unknown 382064 Mm.335028 NM_001177509 ENSMUSG00000079644 Gm1110 - - 9|9 A4 predicted gene 1110 protein-coding 73707 Mm.489987 NM_001081076 ENSMUSG00000055523 Gucy2g 2410077I05Rik|GC-G - 19 D2|19 51.18 cM guanylate cyclase 2g protein-coding 245650 Mm.208511 NM_001007576 ENSMUSG00000042282 Gucy2f A930002I06|GC-F|GC2 - X F2|X 62.85 cM guanylate cyclase 2f protein-coding 100418170 Mm.329278 Gm19052 - - 18|18 A1 dyskeratosis congenita 1, dyskerin homolog pseudogene pseudo 320547 D630023O14Rik - - 1|1 RIKEN cDNA D630023O14 gene protein-coding 62579 D12Mit160 - - 12 39.09 cM DNA segment, Chr 12, Massachusetts Institute of Technology 160 unknown 668456 Gm9179 EG668456 - 7|7 F2 predicted gene 9179 pseudo 76880 Mm.490311 NR_002848 6430411K18Rik PEG11as - 12|12 F1 RIKEN cDNA 6430411K18 gen ncRNA 105244213 XR_866495 Gm39861 - - 2 C3|2 predicted gene, 39861 ncRNA 59040 Mm.489674 NM_021536 ENSMUSG00000017686 Rhot1 2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1 - 11 B5|11 47.62 cM ras homolog family member T1 protein-coding 19206 Mm.228798 NM_008957 ENSMUSG00000021466 Ptch1 A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig - 13 B3|13 32.8 cM patched 1 protein-coding 102639862 Gm21734 - - Y|Y predicted gene, 21734 protein-coding 111291 Hmgn2-rs3 Hmg17-rs3 - - high mobility group nucleosomal binding domain 2, related sequence 3 pseudo 432467 Mm.274784 NM_001079824 ENSMUSG00000020069 Hnrnph3 AA693301|AI666703|Hnrph3 - 10|10 B4 heterogeneous nuclear ribonucleoprotein H3 protein-coding 14802 Mm.209263 NM_019691 ENSMUSG00000025892 Gria4 GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1 - 9 A1|9 2.46 cM glutamate receptor, ionotropic, AMPA4 (alpha 4) protein-coding 11287 Mm.260144 NM_007376 ENSMUSG00000030359 Pzp A1m|A2m|AI893533|MAM - 6 F3|6 63.02 cM PZP, alpha-2-macroglobulin like protein-coding 52695 D13Ertd666e - - - DNA segment, Chr 13, ERATO Doi 666, expressed protein-coding 17202 Mm.229447 NM_016977 ENSMUSG00000047259 Mc4r Mc4-r|Pkcp - 18|18 E1 melanocortin 4 receptor protein-coding 378776 Mm.381216 NR_040354 ENSMUSG00000086171 Pcsk2os1 C630020P19Rik - 2|2 G1 proprotein convertase subtilisin/kexin type 2, opposite strand 1 ncRNA 403180 Mm.220754 NM_207280 ENSMUSG00000050625 Ccdc121 6530421E24Rik|Gm755 - 1|1 H4 coiled-coil domain containing 121 protein-coding 109508 Alcp8 - - 4 16.7 cM alcohol preference locus 8, female specific unknown 102467650 n-TKctt8 n-Tk8 - 5 E3|5 nuclear encoded tRNA lysine 8 (anticodon CTT) tRNA 71125 Mm.399516 NR_045841 4933407G14Rik - - 10|10 C1 RIKEN cDNA 4933407G14 gene ncRNA 108385 Srev9 Srev-9 - - SWR/J-RF/J ecotropic provirus 9 other 22301 Mm.482572 NM_009486 ENSMUSG00000070448 Vmn2r89 V2r10|V2r11 - 14|14 C1 vomeronasal 2, receptor 89 protein-coding 100042069 XR_879129 ENSMUSG00000071041 Impdh2-ps Gm15210 - 8 D1|8 inosine monophosphate dehydrogenase 2, pseudogene pseudo 627110 Mm.194735 NR_003964 Tubb2a-ps2 C79445 - 12|12 A1.1 tubulin, beta 2a, pseudogene 2 pseudo 272350 Mm.268707 NM_001013768 ENSMUSG00000048398 Gm5065 EG272350 - 7 A1|7 predicted gene 5065 pseudo 59028 Mm.28630 NM_021525 ENSMUSG00000024785 Rcl1 2310040A02Rik|AI789745|C76567|RPCL1|Rnac - 19|19 C1 RNA terminal phosphate cyclase-like 1 protein-coding 216742 Mm.34087 NM_173753 ENSMUSG00000035992 Fnip1 A730024A03Rik|AI838773|AW557298 - 11|11 B1.3 folliculin interacting protein 1 protein-coding 12917 crf - - - cream fur unknown 102638918 XM_006508433 Gm35364 - - 7 F3|7 predicted gene, 35364 protein-coding 102643137 LOC102643137 - - - uncharacterized LOC102643137 ncRNA 102635780 XR_001778310 Gm33031 - - 7 F4|7 predicted gene, 33031 ncRNA 665928 Gm7850 EG665928 - 8|8 B3.3 predicted gene 7850 pseudo 11350 Mm.1318 NM_009594 ENSMUSG00000026842 Abl1 AI325092|Abl|E430008G22Rik|c-Abl - 2 21.86 cM|2 B c-abl oncogene 1, non-receptor tyrosine kinase protein-coding 73798 Mm.25252 4930402I19Rik - - 10|10 RIKEN cDNA 4930402I19 gene protein-coding 15562 Mm.20440 NM_008313 ENSMUSG00000026322 Htr4 5-HT-4|5-HT4|5-HT<4L>|5HTR4 - 18|18 E1 5 hydroxytryptamine (serotonin) receptor 4 protein-coding 85097 DXMit137 - - X 10.84 cM DNA segment, Chr X, Massachusetts Institute of Technology 137 unknown 100035136 Gstml - - 2 77.36 cM gestational survival modifier locus unknown 102639398 XR_391253 Gm35724 - - 7 B2|7 predicted gene, 35724 ncRNA 14049 Mm.282719 NM_010165 ENSMUSG00000017897 Eya2 Eab1 - 2 H3|2 85.83 cM EYA transcriptional coactivator and phosphatase 2 protein-coding 102467447 n-TAagc1 n-Ta1 - - nuclear encoded tRNA alanine 1 (anticodon AGC) tRNA 100093650 Trnas-aga - - - transfer RNA serine (anticodon AGA) tRNA 105245344 XR_872305 Gm40816 - - 11 A3.2|11 predicted gene, 40816 ncRNA 492988 Lmblgq3 - - 7 54.85 cM limb length QTL 3 unknown 100035760 Marif3 - - 19 13.9 cM macrophage-associated risk inflammatory factor 3 unknown 72208 Mm.396181 NR_040460 ENSMUSG00000101483 1700016L21Rik CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan - 1|1 C5 RIKEN cDNA 1700016L21 gene ncRNA 100124640 NR_130321 ENSMUSG00000104933 Mir466e Mir466e-2|Mirn466e-2|mmu-mir-466e - 2 A1|2 microRNA 466e ncRNA 100503096 Gm19553 - - 17|17 18.69 cM predicted gene, 19553 ncRNA 105244645 Gm40220 - - 4|4 predicted gene, 40220 ncRNA 30843 Mm.24608 NM_013911 ENSMUSG00000066892 Fbxl12 3110048D16Rik|Fbl12 - 9|9 A3 F-box and leucine-rich repeat protein 12 protein-coding 106677018 LOC106677018 - - - Mpo proximal enhancer and promoter region biological-region 71349 Mm.442093 NR_045858 ENSMUSG00000085004 5430427M07Rik - - 12|12 D3 RIKEN cDNA 5430427M07 gene ncRNA 110636 Bmfr1 Bmfr-1 - - B cell maturation factor responsiveness 1 protein-coding 668653 Gm9286 EG668653 - 12|12 A1.3 predicted gene 9286 pseudo 102636926 XR_381444 Gm33864 - - 12 A3|12 predicted gene, 33864 ncRNA 102465559 NR_105892 ENSMUSG00000098881 Mir6927 Gm27662|mmu-mir-6927 - 11|11 D microRNA 6927 ncRNA 105244276 XR_866673 Gm39916 - - 2 E5|2 predicted gene, 39916 ncRNA 383491 Mm.309380 NM_001081209 ENSMUSG00000042414 Prdm14 - - 1|1 A3 PR domain containing 14 protein-coding 70485 5730409N24Rik - - 19|19 RIKEN cDNA 5730409N24 gene protein-coding 110227 Igh-Inu - - - immunoglobulin heavy chain Inu other 19844 NR_004412 ENSMUSG00000095580 Rnu1b1 Rnu1b-1 - 3 F2.1|3 41.78 cM U1b1 small nuclear RNA snRNA 66336 Mm.440323 NM_025495 ENSMUSG00000021391 Cenpp 1700022C02Rik|4921518G09Rik - 13|13 A5 centromere protein P protein-coding 66255 Mm.272341 NM_001136181 ENSMUSG00000078963 Hsbp1l1 1810005K13Rik - 18|18 E3 heat shock factor binding protein 1-like 1 protein-coding 102637797 Mm.446731 NR_126080 ENSMUSG00000104093 A330015K06Rik - - 3|3 E1 RIKEN cDNA A330015K06 gene ncRNA 619605 Mm.297196 NM_153160 ENSMUSG00000028772 Zcchc17 2810055E05Rik|HSPC251|LDC4|pNO40|pS1D - 4|4 D2.2 zinc finger, CCHC domain containing 17 protein-coding 665213 Gm7542 EG665213 - 6|6 C3 prohibitin pseudogene pseudo 320496 Mm.247838 C230076A16Rik - - 3|3 RIKEN cDNA C230076A16 gene protein-coding 83564 Mm.247765 NM_031389 ENSMUSG00000034690 Nlrp4c Nalp-alpha|Nalp4c|Rnh2 - 7|7 A1 NLR family, pyrin domain containing 4C protein-coding 102635641 XR_375290 Gm32928 - - 2 H3|2 predicted gene, 32928 ncRNA 114650 Pkcal - - - protein kinase C activity in lungs unknown 105245819 XR_874819 Gm41209 - - 14 D3|14 predicted gene, 41209 ncRNA 105245547 XM_017315686 Gm40991 - - 13 B3|13 predicted gene, 40991 protein-coding 105247121 XR_881219 Gm42278 - - 4 A5|4 predicted gene, 42278 ncRNA 111142 Odc-rs14 Odc-14 - - ornithine decarboxylase, related sequence 14 pseudo 112113 Tlf2 - - 9 27.07 cM T lymphocyte fraction 2 unknown 100417192 Gm14971 - - X|X E3 crumbs homolog 1 pseudogene pseudo 100541 AA589521 - - - expressed sequence AA589521 unknown 780956 Ighv1-63 Gm9741 - 12|12 F2 immunoglobulin heavy variable V1-63 other 19485 Rb(13.15)10Mpl Rb10Mpl - - Robertsonian translocation, Chr 13 and 15, Montpellier 10 other 53738 DXPas23 DXPas16|DXPas17 - - DNA segment, Chr X, Pasteur Institute 23 unknown 14814 Mm.322594 NM_008172 ENSMUSG00000002771 Grin2d GluN2D|NMDAR2D|NR2D - 7 B3|7 29.54 cM glutamate receptor, ionotropic, NMDA2D (epsilon 4) protein-coding 258308 NM_146311 ENSMUSG00000096209 Olfr510 GA_x6K02T2PBJ9-10997715-10998659|MOR204-34 - 7|7 E3 olfactory receptor 510 protein-coding 16979 Mm.428543 NM_008516 ENSMUSG00000034648 Lrrn1 2810047E21Rik|NLRR-1 - 6|6 E1 leucine rich repeat protein 1, neuronal protein-coding 105050 AW742725 - - - expressed sequence AW742725 unknown 109218 Mm.480678 NM_175408 ENSMUSG00000071506 Tmem139 A930027H06Rik - 6|6 B2.1 transmembrane protein 139 protein-coding 434860 Gm5644 EG434860 - X F2|X prefoldin 5 pseudogene pseudo 111043194 NR_148917 Gm46993 - - 12|12 predicted gene 46993 pseudo 18088 Mm.330639 NM_010919 ENSMUSG00000027434 Nkx2-2 Nkx-2.2|Nkx2.2|tinman - 2 G2|2 72.63 cM NK2 homeobox 2 protein-coding 209091 Mm.448624 NM_183015 ENSMUSG00000051592 Ccnb3 - - X|X A1.1 cyclin B3 protein-coding 60532 Mm.275521 NM_175394 ENSMUSG00000060475 Wtap 2810408K05Rik|9430038B09Rik - 17|17 A1 Wilms tumour 1-associating protein protein-coding 102640459 Gm36515 - - 17|17 predicted gene, 36515 pseudo 102636887 Gm33837 - - 1|1 predicted gene, 33837 ncRNA 234736 Mm.334816 NM_146218 ENSMUSG00000033596 Rfwd3 BC027246 - 8|8 E1 ring finger and WD repeat domain 3 protein-coding 359964 DXMgc101 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 101 unknown 544945 Gm10770 - - 2|2 G3 predicted gene 10770 pseudo 107767 Mm.201455 NM_029153 ENSMUSG00000021687 Scamp1 4930505M11Rik|AI415563|AW122395 - 13|13 C3 secretory carrier membrane protein 1 protein-coding 108168770 LOC108168770 - - 2 C3 60S ribosomal protein L21 pseudogene pseudo 17354 Mm.209175 NM_010804 ENSMUSG00000026743 Mllt10 Af10|B130021D15Rik|D630001B22Rik|mKIAA4140 - 2|2 A3 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 protein-coding 105246865 XR_879809 Gm42073 - - 11 B1.1|11 predicted gene, 42073 ncRNA 77358 Mm.402759 NM_001256161 ENSMUSG00000094447 9430069I07Rik - - 15|15 B3.1 RIKEN cDNA 9430069I07 gene protein-coding 105245605 XR_873861 Gm41036 - - 13 D1|13 predicted gene, 41036 ncRNA 62764 D16Mit188 - - 16 44.37 cM DNA segment, Chr 16, Massachusetts Institute of Technology 188 unknown 71190 4933425M03Rik - - 3|3 RIKEN cDNA 4933425M03 gene protein-coding 62943 D11Mit322 - - 11 45.92 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 322 unknown 208982 Mm.82306 NM_173731 ENSMUSG00000007908 Hmgcll1 BC037381 - 9|9 D 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 protein-coding 268395 Mm.263161 NM_010822 ENSMUSG00000020287 Mpg 9830006D05|AI326268|APNG|Aag|Mid1 - 11 A4|11 18.83 cM N-methylpurine-DNA glycosylase protein-coding 239510 Mm.267473 NM_178718 ENSMUSG00000072501 Phf20l1 CGI-72|E130113K22Rik - 15|15 D2 PHD finger protein 20-like 1 protein-coding 100861478 NR_046125 ENSMUSG00000094097 n-R5s111 Rn5s8 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 111 rRNA 72373 Mm.46395 NM_028216 ENSMUSG00000022598 Psca 2210408B04Rik - 15|15 D3 prostate stem cell antigen protein-coding 102632842 Gm12322 - - 11 B4|11 43.21 cM predicted gene 12322 pseudo 21354 Mm.482076 NM_013683 ENSMUSG00000037321 Tap1 ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3 - 17 B1|17 17.98 cM transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) protein-coding 109279988 LOC109279988 Mm720 - - VISTA enhancer mm720 biological-region 70802 Mm.397449 NM_027557 ENSMUSG00000044950 Pwwp2a 4631424J17Rik|AI891583|AU024105|D930040F23Rik - 11|11 B1.1 PWWP domain containing 2A protein-coding 102633564 Gm28919 - - Y|Y predicted gene 28919 ncRNA 93677 Mm.332941 NM_053098 ENSMUSG00000029683 Lmod2 C-Lmod - 6|6 A3.1 leiomodin 2 (cardiac) protein-coding 102631708 XR_378583 Gm29978 - - 7 F3|7 predicted gene, 29978 ncRNA 67973 Mm.26973 NM_026483 ENSMUSG00000030521 Mphosph10 2810453H10Rik|5730405D16Rik|AI326008 - 7|7 C M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) protein-coding 100416946 Gm15968 - - 19|19 A zinc finger protein 280B pseudogene pseudo 443553 D6Rp3 - - - DNA segment, Chr 6, Roswell Park 3 unknown 100093644 Trnai-uau - - - transfer RNA isoleucine (anticodon UAU) tRNA 114323 Yaa4 Bxs3 - 1 81.63 cM Y-linked autoimmune acceleration QTL 4 unknown 667040 Gm8432 EG667040 - 7 A3|7 predicted gene 8432 pseudo 236312 Mm.447 NM_175026 ENSMUSG00000043263 Ifi209 4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1 - 1|1 H3 interferon activated gene 209 protein-coding 75367 Mm.159510 NR_040661 ENSMUSG00000089717 4930552N02Rik - - 4|4 B2 RIKEN cDNA 4930552N02 gene ncRNA 258728 Mm.349555 NM_146733 ENSMUSG00000059031 Olfr482 MOR204-14 - 7|7 E3 olfactory receptor 482 protein-coding 108167790 XR_001779707 Gm46207 - - 10 D2|10 predicted gene, 46207 ncRNA 74693 Mm.292227 NR_040547 ENSMUSG00000102362 4930509J09Rik - - 3|3 E3 RIKEN cDNA 4930509J09 gene ncRNA 102467396 n-TYgta4 n-Ty4 - 13 A3.1|13 nuclear encoded tRNA tyrosine 4 (anticodon GTA) tRNA 106029237 NM_001310632 ENSMUSG00000096175 Gm21761 - - 13 D2.3|13 predicted gene, 21761 protein-coding 100039876 Gm20818 - - Y|Y predicted gene, 20818 protein-coding 108167809 XM_017314178 Gm46223 - - 10 B3|10 predicted gene, 46223 protein-coding 239706 Mm.214953 NM_146247 ENSMUSG00000039345 Mettl22 - - 16|16 A1 methyltransferase like 22 protein-coding 100503818 Gm19911 - - 11|11 32.13 cM predicted gene, 19911 ncRNA 77062 5330422M15Rik - - 4|4 RIKEN cDNA 5330422M15 gene protein-coding 102631828 XR_866176 Gm30067 - - 2 B|2 predicted gene, 30067 ncRNA 73467 Mm.263673 NM_028546 ENSMUSG00000038323 1700066M21Rik AI428479 - 1|1 C1.3 RIKEN cDNA 1700066M21 gene protein-coding 326623 Mm.208152 NM_177371 ENSMUSG00000050395 Tnfsf15 Tl1|Tl1a|Tnlg1b|Vegi - 4|4 C1 tumor necrosis factor (ligand) superfamily, member 15 protein-coding 664841 Gm7363 EG664841 - 7|7 A1 predicted gene 7363 pseudo 111426 Mtv40 Mtv-40 - - mammary tumor virus locus 40 other 228366 Mm.31158 NM_172670 ENSMUSG00000040434 Large2 5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105 - 2|2 E1 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 102639724 XR_383731 Gm35967 - - 14 E2.3|14 predicted gene, 35967 ncRNA 108168818 XR_001783567 Gm46778 - - 2 H3|2 predicted gene, 46778 ncRNA 103343 AU018587 - - - expressed sequence AU018587 unknown 320108 Mm.443339 1110019B24Rik - - 9|9 RIKEN cDNA 1110019B24 gene protein-coding 109363673 Bmp2-h-er - - - Bmp2 homolog-enhancer region biological-region 258577 Mm.377575 NM_146584 ENSMUSG00000042863 Olfr1026 MOR196-4 - 2|2 D olfactory receptor 1026 protein-coding 105243933 Gm39647 - - 1|1 predicted gene, 39647 ncRNA 667360 Gm8594 EG667360 - 18|18 D2 high mobility group box 2 pseudogene pseudo 102637024 XR_383926 Gm33936 - - 15 B3.1|15 predicted gene, 33936 ncRNA 319757 Mm.29279 NM_176996 ENSMUSG00000001761 Smo E130215L21Rik|Smoh|bnb|smoothened - 6 A3.3|6 12.36 cM smoothened, frizzled class receptor protein-coding 638102 Mm.469849 NM_001104579 ENSMUSG00000091076 Vmn2r115 EG638102|V2Rp4 - 17|17 A3.3 vomeronasal 2, receptor 115 protein-coding 105245692 XR_874391 Gm41104 - - 14 A3|14 predicted gene, 41104 ncRNA 62241 D17Mit71 - - 17 38.8 cM DNA segment, Chr 17, Massachusetts Institute of Technology 71 unknown 23881 Mm.290530 NM_011816 ENSMUSG00000029405 G3bp2 AA409541|E430034L04Rik|G3BP|mKIAA0660 - 5|5 E2 GTPase activating protein (SH3 domain) binding protein 2 protein-coding 668074 Gm8963 EG668074 - 14|14 C3 aldolase A, fructose-bisphosphate pseudogene pseudo 101055837 XM_006500526 Gm38434 - - 2 H1|2 predicted gene, 38434 protein-coding 104771 Mm.258935 NM_024205 ENSMUSG00000005078 Jkamp 1200003C05Rik|2310047L11Rik|Jamp - 12|12 C3 JNK1/MAPK8-associated membrane protein protein-coding 102465183 NR_105774 ENSMUSG00000099300 Mir6356 Gm27461|mmu-mir-6356 - 18|18 E2 microRNA 6356 ncRNA 68298 Mm.257590 NM_146171 ENSMUSG00000038252 Ncapd2 2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159 - 6|6 F2 non-SMC condensin I complex, subunit D2 protein-coding 637157 Gm7201 EG637157 - 13|13 A3.3 oogenesin 2 pseudogene pseudo 381174 Mm.391100 A330084C13Rik Gm956 - 18|18 E1 RIKEN cDNA A330084C13 gene ncRNA 56480 Mm.34580 NM_019786 ENSMUSG00000020115 Tbk1 1200008B05Rik|AI462036|AW048562 - 10|10 D2 TANK-binding kinase 1 protein-coding 102640470 XR_376478 Gm36523 - - 4 C6|4 predicted gene, 36523 ncRNA 100046078 XM_003085302 Gm15266 - - X|X F3 predicted gene 15266 protein-coding 102640313 XR_389089 Gm11713 - - 11 E1|11 70.29 cM predicted gene 11713 ncRNA 102636637 XR_374563 Gm33647 - - 2 C1.2|2 predicted gene, 33647 ncRNA 435775 Gm12385 - - 4|4 A5 ribosomal protein L7A pseudogene pseudo 114663 Mm.34079 NM_053261 ENSMUSG00000024525 Impa2 2210415D20Rik|AI326924|AW259601 - 18|18 E1 inositol (myo)-1(or 4)-monophosphatase 2 protein-coding 94222 Mm.156946 NM_053008 ENSMUSG00000045591 Olig3 Bhlhb7|bHLHe20|oligo3 - 10|10 A3 oligodendrocyte transcription factor 3 protein-coding 100502740 Mm.287977 4930423K06Rik - - 15|15 F1 RIKEN cDNA 4930423K06 gene unknown 108124 Mm.104540 NM_025898 ENSMUSG00000006024 Napa 1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh - 7 A2|7 8.74 cM N-ethylmaleimide sensitive fusion protein attachment protein alpha protein-coding 102633834 XR_386324 Gm31564 - - 18 E2|18 predicted gene, 31564 ncRNA 21001 T(1;10)11Ad T11Ad - - reciprocal translocation, Chr 1 and 10, Adler 11 other 102633055 Gm30972 - - 7|7 predicted gene, 30972 ncRNA 106050033 Mfcs3 - - - mammal fish conserved sequence 3 biological-region 102633303 Gm31162 - - 6|6 predicted gene, 31162 ncRNA 668822 Olfr1296-ps1 MOR248-13P - 2|2 E3 olfactory receptor 1296, pseudogene 1 pseudo 545963 Mm.483301 NM_001033792 Gm5897 - - 7 B4|7 predicted gene 5897 ncRNA 105246677 XR_878431 Gm26509 - - 1 E2.1|1 predicted gene, 26509 ncRNA 105242972 XR_882212 Gm39034 - - 7 C|7 predicted gene, 39034 ncRNA 102634092 XR_385461 Gm31758 - - 17 A3.3|17 predicted gene, 31758 ncRNA 381065 Gm5145 EG381065 - 17|17 A3.2 small nuclear ribonucleoprotein polypeptide A pseudogene pseudo 102634855 XR_001782501 Gm32339 - - 18 C|18 predicted gene, 32339 ncRNA 71703 Mm.67949 NM_027870 ENSMUSG00000049047 Armcx3 1200004E24Rik|AI450003|ALEX3 - X|X E3 armadillo repeat containing, X-linked 3 protein-coding 100043132 Mm.399336 NR_046075 ENSMUSG00000115139 Gm4251 - - 14 D2|14 predicted gene 4251 ncRNA 100417989 Gm18937 - - 3|3 A1 actin related protein 2/3 complex, subunit 1A pseudogene pseudo 225457 Gm4839 EG225457 - 18|18 B3 DnaJ (Hsp40) homolog, subfamily C, member 30 pseudogene pseudo 279882 NM_001024621 Trav9n-4 A130082M07Rik - 14|14 C2 T cell receptor alpha variable 9N-4 other 620934 Ube2nl EG620934 - 7|7 C ubiquitin-conjugating enzyme E2N-like pseudo 12402 Mm.266871 NM_007619 ENSMUSG00000034342 Cbl 4732447J05Rik|Cbl-2|c-Cbl|cbl - 9 A5.1-A5.2|9 24.72 cM Casitas B-lineage lymphoma protein-coding 20510 Mm.246670 NM_009199 ENSMUSG00000024935 Slc1a1 D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1 - 19|19 C1 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 protein-coding 672682 Mm.454025 NM_001244654 ENSMUSG00000090588 Gm9573 Muc21 - 17 B1|17 predicted gene 9573 protein-coding 219026 Mm.297297 NM_203508 ENSMUSG00000072575 Eddm3b Fam12|Gm75 - 14|14 C1 epididymal protein 3B protein-coding 71062 Mm.23534 NM_027660 ENSMUSG00000042189 Tekt3 4933407G07Rik - 11|11 B3 tektin 3 protein-coding 102638069 XR_376919 Gm34720 - - 5 B3|5 predicted gene, 34720 ncRNA 62011 D6Mit372 - - 6 78.49 cM DNA segment, Chr 6, Massachusetts Institute of Technology 372 unknown 69774 Mm.436639 NM_027209 ENSMUSG00000024677 Ms4a6b 1810027D10Rik - 19|19 A membrane-spanning 4-domains, subfamily A, member 6B protein-coding 101056198 Gm29794 - - 10 B3|10 UPF0183 protein C16orf70 homolog pseudo 68400 Mm.272098 NR_040640 ENSMUSG00000087361 0610043K17Rik - - 4|4 C6 RIKEN cDNA 0610043K17 gene ncRNA 407785 Mm.29897 NM_010888 ENSMUSG00000021606 Ndufs6 BC059730|IP13 - 13|13 C1 NADH dehydrogenase (ubiquinone) Fe-S protein 6 protein-coding 22109 Mm.10106 NR_027507 ENSMUSG00000091749 Tspy-ps - - Y|Y A1 testis specific protein-Y encoded, pseudogene pseudo 69861 Mm.282978 NM_027237 ENSMUSG00000042041 2010003K11Rik - - 19|19 A RIKEN cDNA 2010003K11 gene protein-coding 13169 Mm.256925 NM_013810 ENSMUSG00000020476 Dbnl Abp1|SH3P7|mAbp1 - 11 A1|11 3.87 cM drebrin-like protein-coding 102632536 Gm30587 - - 15|15 predicted gene, 30587 ncRNA 108228203 LOC108228203 Xe1 - - Pax1 enhancer Xe1 biological-region 108713 Mm.296240 2610028H08Rik - - 15|15 RIKEN cDNA 2610028H08 gene protein-coding 109050 Mm.212591 NM_175398 ENSMUSG00000048458 Fam212b 6530418L21Rik|inka2 - 3|3 F2.2 family with sequence similarity 212, member B protein-coding 102641341 LOC102641341 - - - U6 snRNA-associated Sm-like protein LSm5 protein-coding 100043020 Gm11680 - - 11|11 E2 predicted gene 11680 protein-coding 14106 Mm.42011 NM_007989 ENSMUSG00000033837 Foxh1 Fast1|Fast2|fast-1|fast-2 - 15|15 D3 forkhead box H1 protein-coding 226744 Mm.87662 NM_146105 ENSMUSG00000038949 Cnst 9630058J23Rik - 1|1 H4 consortin, connexin sorting protein protein-coding 13308 Del(3)76H Del76H - - deletion, Chr 8, Harwell 76 other 259018 Mm.223405 NM_147016 ENSMUSG00000075194 Olfr1049 MOR187-1 - 2|2 D olfactory receptor 1049 protein-coding 102633801 Gm28130 - - Y|Y predicted gene 28130 ncRNA 102635778 XR_378716 Gm33029 - - 8 A1.1|8 predicted gene, 33029 ncRNA 100417120 Gm18406 - - 1|1 E2.1 REV1 homolog pseudogene pseudo 80890 Mm.44876 NM_030706 ENSMUSG00000027993 Trim2 mKIAA0517|narf - 3|3 F1 tripartite motif-containing 2 protein-coding 102640244 XR_373470 Gm36358 - - 1 C2|1 predicted gene, 36358 ncRNA 102634262 XR_868447 Gm31889 - - 5 C3.1|5 predicted gene, 31889 ncRNA 56538 Mm.154276 NM_019974 ENSMUSG00000067616 Klk11 2310015I08Rik|Prss20|TLSP - 7|7 B3 kallikrein related-peptidase 11 protein-coding 100417973 NR_144493 Pou5f1-rs6 Gm18927|Oct4P3|Otf3-rs6|Otf3f - 14|14 A2 POU domain, class 5, transcription factor 1, related sequence 6 pseudo 100125248 Trbj1-1 Gm16646 - 6 19.69 cM|6 B1 T cell receptor beta joining 1-1 other 15979 Mm.549 NM_010511 ENSMUSG00000020009 Ifngr1 CD119|IFN-gammaR|Ifgr|Ifngr|Nktar - 10 A3|10 8.49 cM interferon gamma receptor 1 protein-coding 100417481 Gm18638 - - 7|7 A1 Ewing sarcoma breakpoint region 1 pseudogene pseudo 112163577 Mm.396815 C86626 - - - expressed sequence C86626 protein-coding 100036383 Msts3 - - - modifier of Salmonella typhimurium susceptibility 3 unknown 102640064 Mm.416865 NR_155423 Gm36221 - - 15 E3|15 predicted gene, 36221 ncRNA 14698 gnd - - - generalized neuroaxonal dystrophy unknown 207607 Mm.189885 NM_175430 ENSMUSG00000039963 Ccdc40 B930008I02Rik - 11|11 E2 coiled-coil domain containing 40 protein-coding 114053 Lrnx9 - - 16 20.26 cM learning-contextual 9 unknown 102467236 n-TAcgc3 n-Ta22 - 4 D2.3|4 nuclear encoded tRNA alanine 3 (anticodon CGC) tRNA 74276 Mm.159153 NM_028849 ENSMUSG00000038973 Cldnd2 1700071E18Rik - 7|7 B3 claudin domain containing 2 protein-coding 319180 NM_178195 ENSMUSG00000069268 Hist1h2bf - - 13|13 A3.1 histone cluster 1, H2bf protein-coding 667385 Gm8604 EG667385 - 3|3 E2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102639792 Gm36022 - - 14|14 predicted gene, 36022 ncRNA 677440 XM_006506842 Clec2j Clrh|EG667622|Gm16457 - 6|6 F3 C-type lectin domain family 2, member J protein-coding 100526488 NR_130337 ENSMUSG00000096113 Mir466b-5 mmu-mir-466b-5 - 2 A1|2 8.22 cM microRNA 466b-5 ncRNA 111389 Emv16 Emv-16 - - endogenous ecotropic MuLV 16 other 69050 Mm.486938 NR_045427 ENSMUSG00000002250 1810013A23Rik - - 17|17 A3.3 RIKEN cDNA 1810013A23 gene ncRNA 102640553 XR_876419 Gm36589 - - 17 A1|17 predicted gene, 36589 ncRNA 100124670 Trbv10 Gm17526 - 6|6 B1 T cell receptor beta variable 10 pseudo 102640938 XR_380915 Gm36884 - - 10 D3|10 predicted gene, 36884 ncRNA 105243953 XR_001778956 Gm39660 - - 1 C3|1 predicted gene, 39660 ncRNA 436194 Gm5754 EG436194 - X|X A1.1 protein phosphatase 1, catalytic subunit, gamma isoform pseudogene pseudo 102637665 XR_378879 Gm34419 Gm45376 - 8 A4|8 predicted gene, 34419 ncRNA 239336 Mm.209312 NM_178717 ENSMUSG00000060735 Rxfp3 BC053073|GPCR135|Rln3r1|Salpr - 15|15 A1 relaxin family peptide receptor 3 protein-coding 16865 Mm.276294 NM_010709 ENSMUSG00000026427 Eif2d D1Ertd5e|Lgtn - 1 E4|1 56.9 cM eukaryotic translation initiation factor 2D protein-coding 72931 Mm.27344 NM_175190 ENSMUSG00000044627 Swi5 1500019F05Rik|2900010J23Rik|AI046671 - 2|2 B SWI5 recombination repair homolog (yeast) protein-coding 110120486 LOC110120486 - - - VISTA enhancer mm1534 biological-region 100093635 Trnaf-gaa - - - transfer RNA phenylalanine (anticodon GAA) tRNA 246110 Naq1 - - 5 65.34 cM nurturing ability QTL 1 unknown 70163 Mm.24119 NM_027339 ENSMUSG00000013643 Lypd8 2210415F13Rik - 11|11 B1.3 LY6/PLAUR domain containing 8 protein-coding 269016 Mm.45472 NM_172966 ENSMUSG00000057719 Sh3rf2 2310046K19|9130023G24Rik|AI452083|Ppp1r39|RNF158 - 18|18 B3 SH3 domain containing ring finger 2 protein-coding 111487 Xmmv27 Env-27|Xmmv-27 - - xenotropic-MCF leukemia virus 27 other 53045 CA7.11 - - - DNA segment, CA7.11 unknown 12512 Mm.371552 NM_007653 ENSMUSG00000025351 Cd63 C75951|ME491|Tspan30 - 10 D3|10 77.19 cM CD63 antigen protein-coding 258500 Mm.271417 NM_146507 ENSMUSG00000096555 Olfr944 MOR171-19 - 9|9 A5.1 olfactory receptor 944 protein-coding 18530 Mm.390715 NM_021543 ENSMUSG00000036422 Pcdh8 1700080P15Rik|Papc - 14 D3|14 42.76 cM protocadherin 8 protein-coding 319287 A430073I11Rik - - - RIKEN cDNA A430073I11 gene protein-coding 353155 Mm.453253 NM_178596 ENSMUSG00000047197 Gjd3 Gja11|Gjc1|cx30.2 - 11|11 D gap junction protein, delta 3 protein-coding 100043424 Mm.297222 NR_028589 Gm14005 - - 2|2 F1 predicted gene 14005 ncRNA 102636599 Gm33618 - - 17|17 predicted gene, 33618 ncRNA 108167900 XR_001780208 LOC108167900 - - 11 B1.3 uncharacterized LOC108167900 ncRNA 102632665 XR_375444 Gm14344 - - 2 H4|2 103.42 cM predicted gene 14344 ncRNA 100043689 Gm11445 - - 2|2 H2 mitochondrial ribosomal protein L11 pseudogene pseudo 383640 Gm5268 EG383640|Hspd1-12p - 1|1 C1.1 heat shock protein 1 (chaperonin) pseudogene 12 pseudo 100416236 Gm17991 - - 7|7 E3 ribosomal protein S2 pseudogene pseudo 100040020 XM_011247884 Gm15143 - - X F3|X predicted gene 15143 protein-coding 65971 Mm.30227 NM_023064 ENSMUSG00000020096 Tbata 1700021K02Rik|AI428928|Spatial|Titest - 10|10 B4 thymus, brain and testes associated protein-coding 110966 Rnu1-2 - - - U1 small nuclear RNA 2 pseudo 100418268 Gm19109 - - 14|14 C1 ATPase, H+ transporting, lysosomal accessory protein 1 pseudogene pseudo 105246694 XR_878486 Gm41941 - - 1 E2.3|1 predicted gene, 41941 ncRNA 107527 Mm.155583 NM_133193 ENSMUSG00000070942 Il1rl2 AI481289|AW551444|IL-1Rrp2 - 1|1 B interleukin 1 receptor-like 2 protein-coding 635136 Gm7150 EG635136 - X F3|X glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102637592 XR_874904 Gm34361 - - 14 E2.3|14 predicted gene, 34361 ncRNA 102639416 Gm35738 - - 8|8 predicted gene, 35738 ncRNA 102644 Mm.246479 NM_178644 ENSMUSG00000032014 Oaf AL024221|D130038B21Rik|D9Ucla1 - 9 A5.1|9 24.24 cM out at first homolog protein-coding 61641 D8Mit230 - - 8 29.06 cM DNA segment, Chr 8, Massachusetts Institute of Technology 230 unknown 99944 BB131052 - - - expressed sequence BB131052 unknown 100135427 Hmgb1-ps2 Gm15059|Hmg-B - X|X F2 high mobility group box 1, pseudogene 2 pseudo 664905 Gm7397 EG664905 - 8|8 A1.1 CD209c antigen pseudogene pseudo 75535 Mm.69328 1700016D02Rik - - 14|14 B RIKEN cDNA 1700016D02 gene protein-coding 665007 Gm7445 EG665007 - 1 A1|1 predicted gene 7445 pseudo 102634649 XR_376883 Gm32183 - - 5 B3|5 predicted gene, 32183 ncRNA 102632202 Gm30342 - - 16|16 predicted gene, 30342 protein-coding 102634749 Gm32256 - - 19 B|19 predicted gene, 32256 pseudo 28208 D6Wum20 392D6L2 - 6 63.77 cM DNA segment, Chr 6, Washington University School of Medicine 20 unknown 58801 Mm.271878 NM_021451 ENSMUSG00000024521 Pmaip1 Noxa - 18|18 E1 phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 94212 Mm.23897 NM_053182 ENSMUSG00000027508 Pag1 Cbp|F730007C19Rik|Pag - 3|3 A1 phosphoprotein associated with glycosphingolipid microdomains 1 protein-coding 108168101 XR_001781006 Gm46430 - - 13 C1|13 predicted gene, 46430 protein-coding 102638978 Gm35410 - - 3|3 predicted gene, 35410 protein-coding 20193 Mm.24662 NM_011309 ENSMUSG00000044080 S100a1 AI266795|S100|S100a - 3 F1|3 39.24 cM S100 calcium binding protein A1 protein-coding 100041240 Gm3226 - - 13|13 D2.2 tubulin, alpha 1B pseudogene pseudo 108168236 XR_001781625 Gm46512 - - 15 D1|15 predicted gene, 46512 ncRNA 216136 Mm.2644 NM_173751 ENSMUSG00000032763 Ilvbl 5830463I21|AI415009 - 10 C1|10 39.72 cM ilvB (bacterial acetolactate synthase)-like protein-coding 17085 Mm.560 NM_008534 ENSMUSG00000004707 Ly9 AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100 - 1 H3|1 79.54 cM lymphocyte antigen 9 protein-coding 208666 Mm.44995 NM_145217 ENSMUSG00000043670 Diras1 Di-Ras1|Gbts1|RIG - 10|10 C1 DIRAS family, GTP-binding RAS-like 1 protein-coding 67161 Mm.331001 NM_001081411 ENSMUSG00000059834 Sclt1 2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla - 3|3 B sodium channel and clathrin linker 1 protein-coding 110592 Ptma-rs6 - - - prothymosin alpha, related sequence 6 protein-coding 52637 Mm.254114 NM_134007 ENSMUSG00000037710 Cisd1 AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET - 10 B5.3|10 36.88 cM CDGSH iron sulfur domain 1 protein-coding 442801 Mm.376147 NM_177566 ENSMUSG00000052921 Arhgef15 D130071N09|D530030K12Rik|E5 - 11|11 B3 Rho guanine nucleotide exchange factor (GEF) 15 protein-coding 100502936 Mm.21182 NM_001201390 ENSMUSG00000045291 E330021D16Rik C85549 - 6 G1|6 66.59 cM RIKEN cDNA E330021D16 gene protein-coding 234407 Mm.240885 NM_146211 ENSMUSG00000034807 Colgalt1 2810024B22Rik|Glt25d1 - 8|8 B3.3 collagen beta(1-O)galactosyltransferase 1 protein-coding 19944 Mm.288696 NM_009082 ENSMUSG00000048758 Rpl29 Rpl43 - 9|9 F1 ribosomal protein L29 protein-coding 258816 Mm.377705 NM_146819 ENSMUSG00000049806 Olfr466 MOR209-1 - 13|13 B3 olfactory receptor 466 protein-coding 100417990 Gm20588 Cct8-1p - 2|2 C1.1 chaperonin containing Tcp1, subunit 8 (theta) pseudogene pseudo 625210 Mm.477978 NM_001220498 Gm14625 - - X A5|X predicted gene 14625 protein-coding 110112 Acf1 Acf-1 - - albumin conformation factor 1 protein-coding 102637535 XR_389503 Gm34319 - - 5 F|5 predicted gene, 34319 ncRNA 53682 DYByu7 D0Byu7 - - DNA segment, Chr Y, Brigham Young University 7 unknown 100036271 Fmgty9 - - 11 16.31 cM femur geometry 9 unknown 100036408 Bmd37 Bmd30 - - bone mineral density 37 unknown 111940 Iap5rb24 - - - intracisternal A-type particle, U5 region, SINE repeat b-24 other 85179 D14Mit92 - - 14 45.31 cM DNA segment, Chr 14, Massachusetts Institute of Technology 92 unknown 226412 Mm.221041 NM_181750 ENSMUSG00000056211 R3hdm1 R3hdm - 1|1 E3 R3H domain containing 1 protein-coding 240873 Mm.276823 NM_183391 ENSMUSG00000066755 Tnfsf18 Gitrl|Tnlg2a - 1 H2.1|1 69.75 cM tumor necrosis factor (ligand) superfamily, member 18 protein-coding 17082 Mm.289824 NM_010743 ENSMUSG00000026069 Il1rl1 DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2 - 1 B|1 19.19 cM interleukin 1 receptor-like 1 protein-coding 100417641 Zbed4-ps3 Gm18731 - 7|7 A1 zinc finger, BED type containing 4, pseudogene 3 pseudo 386454 Mm.105324 NM_001099632 ENSMUSG00000036492 Rnf39 BC038661|Gm1786|Gm1787|Gm320|LIRF - 17|17 B1 ring finger protein 39 protein-coding 104384 Mm.156958 NM_023894 ENSMUSG00000068048 Rhox9 1600026O01Rik|Gpbox|Psx2 - X|X A3.3 reproductive homeobox 9 protein-coding 62599 D13Mit128 - - 13 50.66 cM DNA segment, Chr 13, Massachusetts Institute of Technology 128 unknown 433221 Gm5511 - - 19 A|19 heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene pseudo 100039116 Mm.458441 NM_001199999 ENSMUSG00000073830 Mup14 Gm13514|Mup12 - 4|4 B3 major urinary protein 14 protein-coding 100503840 Mm.491560 Gm19920 - - 12 E|12 49.96 cM predicted gene, 19920 unknown 71718 Mm.288702 NM_027880 ENSMUSG00000024170 Telo2 1200003M09Rik|AI415602|Tel2|mKIAA0683 - 17|17 A3.3 telomere maintenance 2 protein-coding 63008 D18Mit238 - - 18 31.32 cM DNA Segment, Chr 18, Massachusetts Institute of Technology 238 unknown 319839 Mm.393669 XR_867597 A530020G20Rik - - 3|3 G1 RIKEN cDNA A530020G20 gene unknown 68090 Mm.44202 NM_026553 ENSMUSG00000024875 Yif1a 5330422J23Rik|54TM|Yif1|Yif1p - 19|19 A Yip1 interacting factor homolog A (S. cerevisiae) protein-coding 62642 D14Mit153 - - 14 29.36 cM DNA segment, Chr 14, Massachusetts Institute of Technology 153 unknown 52232 D3Ertd207e - - 3 34.91 cM DNA segment, Chr 3, ERATO Doi 207, expressed unknown 100620 Mm.22973 AI413194 - - - expressed sequence AI413194 protein-coding 112323 Tir3b - - 1 56.25 cM trypanosome infection response 3b unknown 100417226 Gm18465 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 78016 Mm.67455 NM_030025 ENSMUSG00000025983 Ccdc150 4930511H11Rik - 1|1 C1.1 coiled-coil domain containing 150 protein-coding 665654 Gm7732 EG665654 - 17|17 A3.2 sperm motility kinase Y pseudogene pseudo 100035784 Lmblgq2 - - - limb length QTL 2 unknown 11911 Mm.641 NM_009716 ENSMUSG00000042406 Atf4 Atf-4|C/ATF|CREB2|TAXREB67 - 15 E1|15 37.85 cM activating transcription factor 4 protein-coding 109280055 LOC109280055 Mm457 - - VISTA enhancer mm457 biological-region 791322 Mm.20440 Gm9876 - - 18 D3|18 predicted gene 9876 unknown 11875 Mm.2816 NM_007491 ENSMUSG00000070424 Art5 ARTC5|Yac-2 - 7 E2|7 54.71 cM ADP-ribosyltransferase 5 protein-coding 100042427 Gm3839 - - 14 A1|14 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 382606 Gm5185 EG382606 - 12|12 C1 lactate dehydrogenase A pseudogene pseudo 85119 D1Mit235 - - 1 23.83 cM DNA segment, Chr 1, Massachusetts Institute of Technology 235 unknown 60977 D16Mit3 - - 16 19.88 cM DNA segment, Chr 16, Massachusetts Institute of Technology 3 unknown 97075 C79743 - - - expressed sequence C79743 unknown 104795665 NR_128563 ENSMUSG00000092765 Gm23363 Mir3154|mir-3154|mmu-mir-3154 - 2|2 B predicted gene, 23363 ncRNA 17950 Naip4 Birc1d|Naip-rs2 - - NLR family, apoptosis inhibitory protein 4 protein-coding 19611 Rb(8.12)22Lub Rb22Lub - - Robertsonian translocation, Chr 8 and 12, Lubeck 22 other 269105 Gm5048 EG269105 - 1|1 A3 predicted gene 5048 pseudo 238799 Mm.173286 NM_178716 ENSMUSG00000009470 Tnpo1 AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN - 13 D1|13 52.24 cM transportin 1 protein-coding 100416830 Mm.490788 NR_045613 ENSMUSG00000098528 Zfp572 4930472F24Rik - 15|15 D1 zinc finger protein 572 pseudo 93904 D16Jhu40 190J24.SP6 - - DNA segment, Chr 16, Johns Hopkins University 40 unknown 103012 Mm.482523 NR_015505 ENSMUSG00000085396 Firre 5830467J12Rik|6720401G13Rik|AW048145 - X|X A5 functional intergenic repeating RNA element ncRNA 100416461 Gm18124 - - 7|7 A1 zinc finger protein 68 pseudogene pseudo 110998 Ppia-ps1 Cyc|Ppia-ps - - peptidylprolyl isomerase A, pseudogene 1 pseudo 102637405 XR_377810 Gm34222 - - 6 D1|6 predicted gene, 34222 ncRNA 108168914 XR_001784056 Gm46834 - - 3 B|3 predicted gene, 46834 ncRNA 93757 Mm.363813 NM_053122 ENSMUSG00000056899 Immp2l AI853880|IMP2|Tg(HLA-A/H2-D)2Enge - 12|12 B1 IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) protein-coding 18104 Mm.252 NM_008706 ENSMUSG00000003849 Nqo1 AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1 - 8 D3|8 54.08 cM NAD(P)H dehydrogenase, quinone 1 protein-coding 100038875 NM_001100608 Rps23-ps1 Gm15450|Rps23-ps - 3|3 B ribosomal protein S23, pseudogene 1 pseudo 62934 D11Mit308 - - 11 25.1 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 308 unknown 402771 C130090I23Rik - - 17|17 RIKEN cDNA C130090I23 gene protein-coding 62957 D12Mit259 - - 12 45.02 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 259 unknown 269003 Mm.194538 NM_172965 ENSMUSG00000024260 Sap130 2610304F09Rik|6720406D06 - 18|18 B1 Sin3A associated protein protein-coding 73472 Mm.87067 NM_178387 ENSMUSG00000029155 Spata18 1700067I02Rik - 5|5 C3.3 spermatogenesis associated 18 protein-coding 104080 Mm.437200 NM_183297 ENSMUSG00000040258 Nxph4 1110036M10Rik|AI851051 - 10|10 D3 neurexophilin 4 protein-coding 66094 Mm.379101 NM_025349 ENSMUSG00000035215 Lsm7 0910001B06Rik|1110033F18Rik - 10|10 C1 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 84111 Mm.60267 NM_032399 ENSMUSG00000051431 Gpr87 - - 3|3 D G protein-coupled receptor 87 protein-coding 234138 Mm.349800 NM_144927 ENSMUSG00000031577 Tti2 - - 8|8 A3 TELO2 interacting protein 2 protein-coding 101056065 Mm.403855 XR_001784027 Gm29771 - - 3 H2|3 predicted gene, 29771 ncRNA 100418472 Gm19232 - - 8|8 D1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 pseudogene pseudo 105245510 Gm40957 - - 13|13 predicted gene, 40957 ncRNA 16226 In(1)46Rk In46Rk - - inversion, Chr 1, Roderick 46 other 107676 Air1 - - - activator of immune response gene Ir1 protein-coding 68318 Mm.284229 NM_026674 ENSMUSG00000053040 Aph1c 0610008A10Rik|APH-1b|Aph1b - 9|9 C aph1 homolog C, gamma secretase subunit protein-coding 72504 Mm.312233 NM_001100449 ENSMUSG00000054321 Taf4b 105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2 - 18|18 A1 TATA-box binding protein associated factor 4b protein-coding 107227 Mm.439977 NM_134147 ENSMUSG00000036278 Macrod1 AI604841|AW743046|D930010J01Rik|Lrp16 - 19|19 A MACRO domain containing 1 protein-coding 51827 D17Sut1e - - - DNA segment, Chr 17, Sutcliffe 1 expressed unknown 20672 Mm.264904 NM_009236 ENSMUSG00000046470 Sox18 AI385749|Ra|Ragl - 2 H4|2 103.71 cM SRY (sex determining region Y)-box 18 protein-coding 723881 NR_030261 ENSMUSG00000076241 Mir543 Mirn543|mir-543|mmu-mir-543 - 12 F1|12 microRNA 543 ncRNA 100124484 NR_030559 ENSMUSG00000077925 Mir453 Mirn453|mmu-mir-453 - 12 F1|12 microRNA 453 ncRNA 73229 Mm.296733 NM_001166497 ENSMUSG00000035868 Zfp983 3110052M02Rik|mszf57|mszf71 - 17|17 A3.2 zinc finger protein 983 protein-coding 71170 4933423N03Rik - - 17|17 RIKEN cDNA 4933423N03 gene protein-coding 620382 Mm.132336 Gm6146 EG620382 - 3|3 A1 predicted gene 6146 unknown 102640887 XR_383609 Gm36845 - - 14 D3|14 predicted gene, 36845 ncRNA 100417358 Gm18558 - - 7|7 B2 stress-induced phosphoprotein 1 pseudogene pseudo 74844 XR_876673 4833447I15Rik - - 17|17 A3.3 RIKEN cDNA 4833447I15 gene ncRNA 77407 Mm.27553 NM_198163 ENSMUSG00000029518 Rab35 9530019H02Rik|AU040256|H-ray|RAB1C|RAY - 5|5 F RAB35, member RAS oncogene family protein-coding 70933 Mm.444742 NR_040608 4931402G19Rik - - 2|2 E5 RIKEN cDNA 4931402G19 gene ncRNA 68089 Mm.289306 NM_026552 ENSMUSG00000079426 Arpc4 20kDa|5330419I20Rik|AI327076|p20-Arc - 6|6 E3 actin related protein 2/3 complex, subunit 4 protein-coding 665264 Gm14314 - - 2|2 H4 transcriptional adaptor 3 pseudogene pseudo 109280149 LOC109280149 Mm1352 - - VISTA enhancer mm1352 biological-region 492906 Mbis1 Babs2|Bana3 - 1 69.95 cM Mycobacterium bovis-induced systemic lupus erythematosus 1 unknown 108168765 XR_001783328 Gm46744 - - 2 C2|2 predicted gene, 46744 ncRNA 102635912 Mm.440627 NR_155293 C030005K06Rik - - 18|18 D1 RIKEN cDNA C030005K06 gene ncRNA 654821 Mm.389337 NM_001039560 ENSMUSG00000074569 Gcnt7 A330041C17Rik|gnt - 2|2 H3 glucosaminyl (N-acetyl) transferase family member 7 protein-coding 243376 Mm.244112 NM_001029987 ENSMUSG00000068536 Doxl2 - - 6|6 B2.3 diamine oxidase-like protein 2 protein-coding 675294 XM_006514416 ENSMUSG00000096131 Gm9639 - - 10 C1|10 predicted gene 9639 protein-coding 108578 Iap3ra6 - - - intracisternal A-type particle, U3 region, SINE repeat a-6 other 16175 Mm.15534 NM_010554 ENSMUSG00000027399 Il1a Il-1a - 2 F1|2 62.9 cM interleukin 1 alpha protein-coding 15292 Hmgb1-rs12 Hmg1-rs12 - - high mobility group box 1, related sequence 12 pseudo 102465784 NR_106151 ENSMUSG00000098316 Mir7683 Gm27950|mmu-mir-7683 - 1|1 H3 microRNA 7683 ncRNA 97231 C78278 - - - expressed sequence C78278 protein-coding 100504176 Gm20101 - - 1|1 79.54 cM predicted gene, 20101 ncRNA 102633679 XR_001778145 Gm31445 - - 7 C|7 predicted gene, 31445 protein-coding 102638627 XR_388958 Gm35148 - - 11 D|11 predicted gene, 35148 ncRNA 73482 1700074A21Rik - - 1|1 RIKEN cDNA 1700074A21 gene protein-coding 100416917 Gm18320 - - 8|8 B1.3 methyltransferase like 13 pseudogene pseudo 75296 Mm.227250 NM_201230 ENSMUSG00000069135 Fgfr1op 4930553O10Rik|FOP - 17|17 A1 Fgfr1 oncogene partner protein-coding 399574 D630050G16Rik - - - RIKEN cDNA D630050G16 gene protein-coding 213980 Mm.482259 NM_001033669 ENSMUSG00000090173 Fbxw10 Fbw10|HREP|SM25H2|SM2SH2 - 11|11 B2 F-box and WD-40 domain protein 10 protein-coding 66758 Mm.251599 NM_025749 ENSMUSG00000046886 Zfp474 4933409D10Rik|Znf474 - 18|18 D1 zinc finger protein 474 protein-coding 66121 Mm.246996 NM_025366 ENSMUSG00000063787 Chchd1 1110001O19Rik|2400010G13Rik|MRP-S37 - 14|14 A3 coiled-coil-helix-coiled-coil-helix domain containing 1 protein-coding 116810 Mm.17709 NM_148935 ENSMUSG00000042002 Foxn4 - - 5|5 F forkhead box N4 protein-coding 207565 Mm.289237 NM_145358 ENSMUSG00000029471 Camkk2 6330570N16Rik|AW061083|mKIAA0787 - 5|5 F calcium/calmodulin-dependent protein kinase kinase 2, beta protein-coding 76386 Mm.443249 NM_029590 1700010D01Rik - - X|X C3 RIKEN cDNA 1700010D01 gene protein-coding 100417680 Gm18760 - - 14|14 B corepressor interacting with RBPJ, 1 pseudogene pseudo 100418218 Gm13899 - - 6|6 A2 metal response element binding transcription factor 2 pseudogene pseudo 77532 Mm.459434 NM_001033181 ENSMUSG00000079083 Jrkl C030035D04Rik|HHMJG - 9|9 A1 Jrk-like protein-coding 111605 Xmv20 Xmv-20 - - xenotropic murine leukemia virus 20 other 66167 Mm.2395 NM_183250 ENSMUSG00000091537 Tma7 1110017O22Rik|Ccdc72 - 9|9 F2 translational machinery associated 7 protein-coding 110654 Idd2 Idd-2 - 9 52.24 cM insulin dependent diabetes susceptibility 2 protein-coding 359906 DXMgc71 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 71 unknown 100034785 Bmd16 - - 18 19.41 cM bone mineral density 16 unknown 628205 Mm.429780 LOC628205 - - 17|17 A3.2 uncharacterized LOC628205 unknown 667721 Gm8782 EG667721 - 13|13 A1 ribosomal protein S2 pseudogene pseudo 52408 Mm.437041 D7Ertd807e - - 7 69.29 cM DNA segment, Chr 7, ERATO Doi 807, expressed unknown 72310 Mm.34613 NM_024253 ENSMUSG00000004612 Nkg7 2500004F03Rik - 7|7 B3 natural killer cell group 7 sequence protein-coding 637050 Ighv1-10 - - 12|12 F2 immunoglobulin heavy variable V1-10 pseudo 102634424 XR_377891 Gm32009 - - 6 D2|6 predicted gene, 32009 ncRNA 102642281 XR_873494 Gm38602 - - 13 B1|13 predicted gene, 38602 ncRNA 105242962 Gm39025 - - 7|7 predicted gene, 39025 ncRNA 100036025 Gf1 - - - gonadal fat pad weight 1 unknown 102638029 XR_872480 Gm34696 - - 12 A1.1|12 predicted gene, 34696 ncRNA 110351 Mm.180763 NM_029563 ENSMUSG00000041351 Rap1gap 1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1 - 4 D3|4 70.02 cM Rap1 GTPase-activating protein protein-coding 209815 Mm.122963 NM_172478 ENSMUSG00000039201 Tbc1d25 6330576A08Rik|DXHXS7927e|Oatl1 - X A1.1|X 3.69 cM TBC1 domain family, member 25 protein-coding 258209 Mm.424498 Olfr22-ps1 MOR135-18|MTPCR35|Olfr22 - 11|11 B4 olfactory receptor 22, pseudogene 1 pseudo 16602 Klk1b2-ps Klk-ps1|mGK-2 - 7 B3|7 28.44 cM kallikrein 1-related peptidase b2, pseudogene pseudo 270110 Mm.334918 NM_001164598 ENSMUSG00000051495 Irf2bp2 E130305N23Rik|IRF-2BP2 - 8|8 E2 interferon regulatory factor 2 binding protein 2 protein-coding 13685 Mm.6700 NM_007918 ENSMUSG00000031490 Eif4ebp1 4e-bp1|AA959816|PHAS-I - 8 A2|8 15.95 cM eukaryotic translation initiation factor 4E binding protein 1 protein-coding 100034930 Char7 - - 17 28.8 cM P. chabaudi malaria resistance QTL 7 unknown 56199 Mm.274243 NM_019552 ENSMUSG00000031974 Abcb10 Abc-me|Abcb12 - 8|8 E2 ATP-binding cassette, sub-family B (MDR/TAP), member 10 protein-coding 387565 Mm.351450 NM_199225 ENSMUSG00000058728 Cd300c Clm6 - 11|11 E2 CD300C molecule protein-coding 100303739 Mm.449812 Gm10844 - - 11|11 predicted gene 10844 unknown 101055958 Gm28216 - - Y|Y predicted gene 28216 protein-coding 100038480 Mm.4558 Gm10461 - - - predicted gene 10461 unknown 66965 Mm.482288 NM_153775 ENSMUSG00000049482 Ctu2 2310061F22Rik|C16orf84|Ncs2 - 8|8 E1 cytosolic thiouridylase subunit 2 protein-coding 105244445 XR_867299 Gm40052 - - 3 C|3 predicted gene, 40052 ncRNA 21637 Mm.364155 Tcrg-V3 TCRGV5S3|TRGV3|vgamma3 - 13 A2|13 T cell receptor gamma, variable 3 other 105244386 XR_867055 Gm40005 - - 2 H3|2 predicted gene, 40005 ncRNA 12807 Mm.291533 NM_080634 ENSMUSG00000027615 Hps3 coa - 3 A2|3 6.12 cM HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 protein-coding 100036147 Lprq3 - - 1 76.73 cM lipoprotein QTL 3 unknown 622675 Mm.48724 NM_178267 ENSMUSG00000071064 Zfp827 2810449M09Rik|D630040G17Rik|Znf827 - 8|8 C1 zinc finger protein 827 protein-coding 76915 Mm.274829 NM_029797 ENSMUSG00000033752 Mnd1 2610034E18Rik|AI591601|Gaj - 3|3 F1 meiotic nuclear divisions 1 protein-coding 328505 Mm.226771 NM_177818 ENSMUSG00000049214 Skint7 C130057D23Rik - 4|4 D1 selection and upkeep of intraepithelial T cells 7 protein-coding 109747 Rasl3 - - - RAS-like, family 3 protein-coding 100038395 Mm.215259 1700061E17Rik - - - RIKEN cDNA 1700061E17 gene unknown 664922 Gm7407 EG664922 - 8|8 A1.1 cell division cycle 42 homolog pseudogene pseudo 97683 Mm.351861 C76332 - - - expressed sequence C76332 unknown 11546 Mm.281482 NM_009632 ENSMUSG00000036023 Parp2 ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2 - 14 26.25 cM|14 C1 poly (ADP-ribose) polymerase family, member 2 protein-coding 15154 Hc5 Cen5 - - heterochromatin, Chr 5 other 777659 Ighd2-1 - - 12|12 F2 Immunoglobulin heavy diversity 2-1 other 100041197 Gm12495 - - 4|4 B2 predicted gene 12495 pseudo 100048926 Mm.23895 Gm12945 - - - predicted gene 12945 unknown 359892 DXMgc11 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 11 unknown 667823 Mm.482375 NM_001310602 ENSMUSG00000060441 Trim5 EG667823|Gm8833 - 7|7 E3 tripartite motif-containing 5 protein-coding 277939 Mm.276374 NM_001017985 ENSMUSG00000047248 C2cd3 AU020772 - 7|7 E2 C2 calcium-dependent domain containing 3 protein-coding 102465714 NR_106097 ENSMUSG00000104958 Mir7238 mmu-mir-7238 - 8|8 A1.1 microRNA 7238 ncRNA 102631839 XR_380660 Gm30073 - - 10 C1|10 predicted gene, 30073 ncRNA 71650 Mm.158744 NR_045887 ENSMUSG00000078618 4930456L15Rik - - 4|4 C6 RIKEN cDNA 4930456L15 gene ncRNA 78441 Mm.33337 A930033M14Rik - - 10|10 RIKEN cDNA A930033M14 gene protein-coding 107710 Aem1 Aem-1 - - antierythrocyte autoantibody modifier 1 protein-coding 102632236 XR_378675 Gm30369 - - 8 A1.1|8 predicted gene, 30369 ncRNA 100039602 Gm20808 - - Y|Y predicted gene, 20808 protein-coding 66408 Mm.430710 NM_025545 ENSMUSG00000028411 Aptx 2410016G21Rik|AA388047|FHA-HIT - 4|4 A5 aprataxin protein-coding 227393 Gm1833 - - 1|1 D abhydrolase domain containing 6 pseudogene pseudo 73522 1700084M22Rik - - 16|16 RIKEN cDNA 1700084M22 gene protein-coding 114743 Scpro1 Scp1 - - stem cell proliferation 1 unknown 102635322 XR_387031 LOC102635322 - - X D uncharacterized LOC102635322 ncRNA 105244046 XR_001779598 Gm39729 - - 1 H5|1 predicted gene, 39729 ncRNA 70918 Mm.23166 NM_027602 ENSMUSG00000029206 Nsun7 4921525L17Rik - 5|5 C3.1 NOL1/NOP2/Sun domain family, member 7 protein-coding 109279897 LOC109279897 Mm74 - - VISTA enhancer mm74 biological-region 102639684 XM_011246073 Gm35938 - - 16 B5|16 predicted gene, 35938 pseudo 75840 Mm.246010 4930558N01Rik - - 7|7 RIKEN cDNA 4930558N01 gene protein-coding 667732 Gm8785 EG667732 - 12|12 E cofilin 1, non-muscle pseudogene pseudo 108376 Xmv2 Xmv-2 - - xenotropic murine leukemia virus 2 other 13282 Del(14)38H Del38H - - deletion, Chr 14, Harwell 38 other 100035447 Pstc5 - - - periosteal circumference 5 unknown 111772 Iapls1-8 - - - intracisternal A particle, lymphocyte specific 1-8 other 628050 Gm6831 EG628050 - 8|8 D3 carboxylesterase 2 pseudogene pseudo 100034726 Mm.3229 NR_003373 ENSMUSG00000062353 Gm15772 - - 5|5 A1 ribosomal protein L26 pseudogene pseudo 338366 Mm.41152 NM_177389 Mia3 9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango - 1|1 H5 melanoma inhibitory activity 3 protein-coding 100526542 NR_130340 ENSMUSG00000093219 Mir3113 mmu-mir-3113 - X F3|X 68.46 cM microRNA 3113 ncRNA 100861704 Gm21151 - - Y|Y predicted gene, 21151 protein-coding 12830 Mm.286892 NM_007736 ENSMUSG00000031274 Col4a5 - - X F2|X 62.16 cM collagen, type IV, alpha 5 protein-coding 111754 Iapls2-2 - - - intracisternal A particle, lymphocyte specific 2-2 other 100316695 NR_035464 ENSMUSG00000088901 Mir1943 mir-1943|mmu-mir-1943 - 15 E1|15 37.7 cM microRNA 1943 ncRNA 102640326 XR_391264 Gm36420 - - 7 B2|7 predicted gene, 36420 ncRNA 20937 Mm.9244 NM_011514 ENSMUSG00000039231 Suv39h1 AI852103|AL022883|DXHXS7466e|H3-K9-HMTase 1|KMT1A|mIS6 - X A1.1|X 3.64 cM suppressor of variegation 3-9 1 protein-coding 100035971 Fecq3 - - 1 3.67 cM fecundity QTL 3 unknown 102465634 NR_106014 ENSMUSG00000099258 Mir7047 Gm27270|mmu-mir-7047 - 7|7 A3 microRNA 7047 ncRNA 76768 Mm.58068 NM_001081082 ENSMUSG00000079440 Alpi 2010001C14Rik|Akp6|gIAP - 1|1 C5 alkaline phosphatase, intestinal protein-coding 60781 D3Mit32 - - 3 76.22 cM DNA segment, Chr 3, Massachusetts Institute of Technology 32 unknown 100504125 Gm20075 - - 13 D1|13 50.49 cM basic transcription factor 3-like 4 pseudogene pseudo 12168 Mm.7106 NM_007561 ENSMUSG00000067336 Bmpr2 2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272 - 1|1 C2 bone morphogenetic protein receptor, type II (serine/threonine kinase) protein-coding 258901 Mm.377742 NM_146899 ENSMUSG00000075104 Olfr1219 MOR233-6 - 2|2 E1 olfactory receptor 1219 protein-coding 493044 Cfld3 - - 17 7.65 cM cystic fibrosis lung disease 3 unknown 62740 D18Mit171 - - 18 10.35 cM DNA segment, Chr 18, Massachusetts Institute of Technology 171 unknown 100035155 Bntq17 - - - bone traits QTL 17 unknown 72489 Mm.244671 2610301H18Rik - - 2|2 RIKEN cDNA 2610301H18 gene protein-coding 100036433 Brmth9 - - 14 20.88 cM behavioral response to methamphetamines 9 unknown 207854 Mm.284945 NM_174993 ENSMUSG00000062170 Fmr1nb 3830422N12Rik|NY-SAR-35|NYSAR35 - X|X A7.1 fragile X mental retardation 1 neighbor protein-coding 21094 T(15;18)22Ad T22Ad - - reciprocal translocation, Chr 15 and 18, Adler 22 other 626359 Mm.387216 NM_001037927 ENSMUSG00000039099 Wdr93 EG626359 - 7 D2|7 WD repeat domain 93 protein-coding 102634058 Mm.491476 XR_381404 LOC102634058 - - 12 A2 uncharacterized LOC102634058 ncRNA 666955 Mm.450961 Gm8378 EG666955 - 12|12 D3 predicted gene 8378 unknown 620928 Mm.469906 NM_001105186 ENSMUSG00000070458 Vmn2r73 EG620928 - 7|7 D3 vomeronasal 2, receptor 73 protein-coding 74715 Mm.484032 NR_152169 ENSMUSG00000091676 4930521O11Rik - - 14 A1|14 RIKEN cDNA 4930521O11 gene ncRNA 13433 Mm.128580 NM_010066 ENSMUSG00000004099 Dnmt1 Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI - 9 A3|9 7.66 cM DNA methyltransferase (cytosine-5) 1 protein-coding 102639530 XR_388022 Gm26832 - - 8 D3|8 predicted gene, 26832 ncRNA 17448 Mm.297096 NM_008617 ENSMUSG00000019179 Mdh2 MDH|Mdh-2|Mor-1|Mor1 - 5 G2|5 75.4 cM malate dehydrogenase 2, NAD (mitochondrial) protein-coding 102465779 NR_106142 ENSMUSG00000098826 Mir7677 Gm27400|mmu-mir-7677 - 17|17 A3.3 microRNA 7677 ncRNA 100417299 Gm18515 - - 10|10 C3 CWC15 homolog pseudogene pseudo 100503310 LOC100503310 - - - mucosal pentraxin-like protein-coding 414069 Mm.379069 NM_001243888 ENSMUSG00000078786 BC024978 - - 7|7 A3 cDNA sequence BC024978 protein-coding 105246818 XR_001778650 Gm42042 - - 8 D3|8 predicted gene, 42042 ncRNA 75098 Mm.152544 4930515G13Rik - - 17|17 A3.3 RIKEN cDNA 4930515G13 gene unknown 320403 Mm.483508 9930017N22Rik - - 15|15 RIKEN cDNA 9930017N22 gene protein-coding 208266 Mm.152371 NM_199322 ENSMUSG00000061589 Dot1l A630076O07|AW907654|Dot1|KMT4|mDot1 - 10|10 C1 DOT1-like, histone H3 methyltransferase (S. cerevisiae) protein-coding 381091 Mm.139204 NM_001033978 ENSMUSG00000067341 H2-Eb2 A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2 - 17 B1|17 17.98 cM histocompatibility 2, class II antigen E beta2 protein-coding 102632242 XR_374333 Gm30374 - - 2 B|2 predicted gene, 30374 ncRNA 61804 D2Mit395 - - 2 59.97 cM DNA segment, Chr 2, Massachusetts Institute of Technology 395 unknown 18143 Mm.2380 NM_008719 ENSMUSG00000026077 Npas2 MOP4|bHLHe9 - 1 B|1 17.98 cM neuronal PAS domain protein 2 protein-coding 77247 9430006E15Rik - - 9|9 RIKEN cDNA 9430006E15 gene protein-coding 110929 Sui1-rs4 - - - suppressor of initiator codon mutations, related sequence 4 (S. cerevisiae) protein-coding 27397 Mm.44225 NM_025301 ENSMUSG00000030879 Mrpl17 MRP-L26|Rpml26 - 7|7 E3 mitochondrial ribosomal protein L17 protein-coding 74253 Mm.121859 NM_001033171 ENSMUSG00000071537 Klrg2 2310020F24Rik - 6|6 B1 killer cell lectin-like receptor subfamily G, member 2 protein-coding 105298 Mm.275054 NM_134065 ENSMUSG00000002808 Epdr1 AU040950|AV006210|Epdm2|Epdr2|MERP-1|MERP-2|MERP2|Ucc1 - 13|13 A2 ependymin related protein 1 (zebrafish) protein-coding 546886 Mm.464847 NM_001195094 ENSMUSG00000094282 Cfap73 Ccdc42b|Gm5988 - 5 F|5 cilia and flagella associated protein 73 protein-coding 13013 Mm.21005 NM_009979 ENSMUSG00000027445 Cst9 M12|cresp|testatin - 2|2 G3 cystatin 9 protein-coding 100035893 Igan2 - - 1 67.97 cM IgA nephropathy 2 unknown 100038565 Mm.34118 Gm10871 - - - predicted gene 10871 unknown 62713 D18Mit103 - - 18 44.19 cM DNA segment, Chr 18, Massachusetts Institute of Technology 103 unknown 56334 Mm.325307 NM_019770 ENSMUSG00000029390 Tmed2 1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1 - 5|5 F transmembrane p24 trafficking protein 2 protein-coding 667062 Gm13545 - - 2|2 C1.1 predicted gene 13545 pseudo 105243716 Gm39532 - - X|X recQ-mediated genome instability protein 2 pseudogene pseudo 545691 Mm.332015 NR_040672 ENSMUSG00000085424 Fhad1os1 Gm13037 - 4|4 E1 forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1 ncRNA 13396 Mm.439763 NM_010057 ENSMUSG00000029754 Dlx6 - - 6 A1|6 2.83 cM distal-less homeobox 6 protein-coding 78411 3110033O22Rik - - 10|10 RIKEN cDNA 3110033O22 gene protein-coding 102631729 XR_380920 Gm29997 - - 10 D3|10 predicted gene, 29997 ncRNA 208643 Mm.260256 NM_145941 ENSMUSG00000045983 Eif4g1 E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI - 16|16 B1 eukaryotic translation initiation factor 4, gamma 1 protein-coding 383753 Gm1330 Cstap5 - 2|2 G3 predicted gene 1330 protein-coding 99143 Mm.445091 AL022964 - - - expressed sequence AL022964 unknown 62119 D17Mit1007 D12Mit93 - 17 46.62 cM DNA segment, Chr 17, Massachusetts Institute of Technology 1007 unknown 667329 Gm13365 - - 2|2 A2 lactate dehydrogenase A pseudogene pseudo 110120393 LOC110120393 - - - VISTA enhancer mm323 biological-region 105289 AU021877 - - - expressed sequence AU021877 unknown 105247072 XR_880916 Gm42245 - - 5 B1|5 predicted gene, 42245 ncRNA 102465706 NR_106083 ENSMUSG00000098299 Mir7224 Gm27971|mmu-mir-7224 - 2|2 C1.3 microRNA 7224 ncRNA 211429 Mm.41467 NM_145378 ENSMUSG00000098488 Pla2g4b A030011C02Rik|Gm1013|cPLA2-beta - 2|2 E5 phospholipase A2, group IVB (cytosolic) protein-coding 102632684 XR_001778529 Gm30692 Gm44619 - 8 A2|8 predicted gene, 30692 ncRNA 29856 Mm.188516 NM_013870 ENSMUSG00000020439 Smtn smsmo - 11|11 A1 smoothelin protein-coding 100035030 Etan1 - - 7 43.46 cM ether anesthesia 1 unknown 14426 Mm.314 NM_015737 ENSMUSG00000090035 Galnt4 AV011803 - 10|10 C3 polypeptide N-acetylgalactosaminyltransferase 4 protein-coding 105246456 Gm41743 - - 18|18 predicted gene, 41743 ncRNA 102634974 Gm32426 - - 6|6 predicted gene, 32426 ncRNA 102465544 NR_105867 ENSMUSG00000106302 Mir6902 mmu-mir-6902 - 1|1 D microRNA 6902 ncRNA 272667 Mm.444718 NR_030763 ENSMUSG00000079711 Smok4a 4930513D10Rik|Smok2c - 17|17 A1 sperm motility kinase 4A pseudo 399587 6430502G17Rik - - - RIKEN cDNA 6430502G17 gene protein-coding 667619 Gm8731 EG667619 - 18|18 E1 predicted gene 8731 pseudo 105244641 Mm.404914 NR_151521 Gm12724 - - 4 C7|4 49.41 cM predicted gene 12724 ncRNA 329790 Mm.355655 XR_001784239 A630034I12Rik - - 4|4 A1 RIKEN cDNA A630034I12 gene ncRNA 114777 Actd2 - - 5 10.06 cM activity-distance traveled 2 unknown 102636733 Mm.399573 XR_373687 Gm2453 100039844 - 1|1 H2.3 predicted gene 2453 ncRNA 75823 Mm.444732 NM_029455 ENSMUSG00000027209 Fam227b 4930525F21Rik - 2|2 F1 family with sequence similarity 227, member B protein-coding 110120364 LOC110120364 - - - VISTA enhancer mm76 biological-region 105243511 Gm37249 - - 9|9 predicted gene, 37249 ncRNA 620191 Igkv6-29 19-29|Gm16692 - 6|6 C1 immunoglobulin kappa chain variable 6-29 other 108169072 LOC108169072 - - 5 G1.3 40S ribosomal protein S2 pseudogene pseudo 112052 Mobq1 Mob1 - 7 66.7 cM multigenic obesity QTL 1 unknown 102467584 n-TPagg1 n-Tp1 - - nuclear encoded tRNA proline 1 (anticodon AGG) tRNA 102633776 XR_001779753 Gm31523 - - 1 A3|1 predicted gene, 31523 ncRNA 77411 Mm.183003 NM_176838 ENSMUSG00000084128 Esrp2 9530027K23Rik|Rbm35b - 8|8 D3 epithelial splicing regulatory protein 2 protein-coding 666842 Mm.422933 NM_001163195 ENSMUSG00000079577 Gm14692 - - X A7.1|X predicted gene 14692 protein-coding 100417938 Gm18910 - - 18|18 E3 nucleolar and spindle associated protein 1 pseudogene pseudo 74075 Mm.46102 NM_001143765 ENSMUSG00000025480 Syce1 4933406J07Rik - 7 F4|7 synaptonemal complex central element protein 1 protein-coding 636260 Mm.453038 Ighv9-4 EG636260|Gm7175|MRP5 - 12|12 F1 immunoglobulin heavy variable 9-4 other 100035961 Nilac12 - - 17 55.48 cM nicotine induced locomotor activity 12 unknown 258859 Mm.377723 NM_146860 ENSMUSG00000051003 Olfr161 MOR131-1|OR912-47M6 - 16|16 A1 olfactory receptor 161 protein-coding 102639263 Gm28990 - - Y|Y predicted gene 28990 ncRNA 27633 D0Dcr12 - - - DNA segment, Derry C. Roopenian 12 unknown 102635658 Mm.80989 XR_387696 1700040P09Rik - - 5|5 F RIKEN cDNA 1700040P09 gene ncRNA 12950 Mm.266790 NM_013500 ENSMUSG00000021613 Hapln1 BB099155|CLP|Crtl1|Crtl1l|LP|LP-1 - 13 C3|13 45.5 cM hyaluronan and proteoglycan link protein 1 protein-coding 100041622 Gm3436 - - 9 D|9 ribosomal RNA processing 7 homolog A pseudogene pseudo 217944 Mm.227642 NM_175930 ENSMUSG00000041992 Rapgef5 4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef - 12|12 F2 Rap guanine nucleotide exchange factor (GEF) 5 protein-coding 319486 Mm.390671 NM_176925 ENSMUSG00000090564 A430057M04Rik - - 14|14 A3 RIKEN cDNA A430057M04 gene protein-coding 100124552 Vmn2r-ps48 - - 7|7 A1 vomeronasal 2, receptor, pseudogene 48 pseudo 235509 Aldoa-ps4 EG235509|Gm4896 - 9|9 E1 aldolase A, pseudogene 4 pseudo 105242897 XR_880197 Gm38981 - - 11 D|11 predicted gene, 38981 ncRNA 110046 Kifc4a - - - kinesin family member C4A protein-coding 71843 Mm.27738 NM_001146012 ENSMUSG00000034194 R3hcc1 1700020M16Rik|AA407796 - 14 D2|14 36.08 cM R3H domain and coiled-coil containing 1 protein-coding 100418060 Gm18974 - - 13|13 B1 patatin-like phospholipase domain containing 8 pseudogene pseudo 72633 Mm.32874 2810019C22Rik AI451161 - 9|9 RIKEN cDNA 2810019C22 gene protein-coding 625060 XM_889601 Gm6551 EG625060 - 16|16 B1 predicted gene 6551 protein-coding 70294 Mm.466670 NM_144528 ENSMUSG00000035890 Rnf126 2610010O19Rik - 10|10 C1 ring finger protein 126 protein-coding 258717 Mm.377652 NM_146722 ENSMUSG00000049528 Olfr429 MOR105-1 - 1|1 H3 olfactory receptor 429 protein-coding 381917 Mm.490012 XM_006508416 ENSMUSG00000052273 Dnah3 BC051401|Dnahc3 - 7|7 F2 dynein, axonemal, heavy chain 3 protein-coding 100036230 Tb2r1 Lskcn - - TGF-beta2 responsiveness 1 unknown 625098 Mm.32075 NM_001037717 ENSMUSG00000044712 Slc38a6 AW322671|EG625098 - 12|12 C3 solute carrier family 38, member 6 protein-coding 15983 Mm.215335 NM_025903 ENSMUSG00000010048 Ifrd2 1810034A24Rik|AA470234|AI838527|SKMc15 - 9 F1|9 58.24 cM interferon-related developmental regulator 2 protein-coding 22590 Mm.247036 NM_011728 ENSMUSG00000028329 Xpa AI573865|Xpac - 4 B1|4 24.49 cM xeroderma pigmentosum, complementation group A protein-coding 108168527 XM_017318716 ENSMUSG00000094616 LOC108168527 - - Y C3 X-linked lymphocyte-regulated protein PM1-like protein-coding 102635063 Gm28944 - - Y|Y predicted gene 28944 ncRNA 102640631 XR_374180 Gm36649 - - 2 A3|2 predicted gene, 36649 ncRNA 105247033 XR_880796 Gm42215 - - 3 B|3 predicted gene, 42215 ncRNA 105246367 XR_877178 Gm41665 - - 18 A1|18 predicted gene, 41665 ncRNA 106007487 Hobbit1 - - - Hoxb4-Hoxb5 intergenic transcript 1 ncRNA 403205 Mm.190508 NM_207531 ENSMUSG00000036231 Agr3 BCMP11|E030025L21Rik|Gm888 - 12|12 A3 anterior gradient 3 protein-coding 15508 Hsp25-ps1 25kDa - 13|13 A5 heat shock protein 25, pseudogene 1 pseudo 105244120 XR_866135 Gm39789 - - 2 B|2 predicted gene, 39789 ncRNA 208347 Gm4753 EG208347 - 1|1 D predicted gene 4753 pseudo 100038662 Mm.483760 D130046C19Rik - - - RIKEN cDNA D130046C19 gene unknown 404740 Iglj3 Igl-J3 - 16|16 A3 immunoglobulin lambda joining 3 other 668173 Mm.133114 NM_001042407 ENSMUSG00000029047 Pex10 AV128229|Gm142 - 4|4 E2 peroxisomal biogenesis factor 10 protein-coding 114687 Corn2 - - - corneal disease 2 unknown 67337 Mm.26944 NM_024199 ENSMUSG00000027498 Cstf1 1700057K18Rik|AI788832 - 2 H3|2 94.84 cM cleavage stimulation factor, 3' pre-RNA, subunit 1 protein-coding 100417290 Gm18507 - - 10|10 A4 slowmo homolog 2 pseudogene pseudo 102639738 Mm.442383 XR_380030 ENSMUSG00000091661 Gm17021 - - 9 F4|9 74.49 cM predicted gene 17021 ncRNA 64945 Mm.40132 NM_022890 ENSMUSG00000046798 Cldn12 - - 5|5 A1 claudin 12 protein-coding 19570 Rb(5.15)12Tu Rb12Tu - - Robertsonian translocation, Chr 5 and 15, Tubingen 12 other 102639908 XR_879820 Gm36109 - - 11 B1.2|11 predicted gene, 36109 ncRNA 56373 Mm.24242 NM_019775 ENSMUSG00000021999 Cpb2 1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI - 14|14 D3 carboxypeptidase B2 (plasma) protein-coding 24079 Tcra-V22.2 - - - T cell receptor alpha, variable 22.2 other 100042814 Mm.405775 NR_040308 ENSMUSG00000073652 Apol7d Gm15456 - 1|1 C3 apolipoprotein L 7d ncRNA 319440 Mm.458549 E430002N23Rik - - 18|18 RIKEN cDNA E430002N23 gene unknown 61756 D4Mit241 - - 4 30.48 cM DNA segment, Chr 4, Massachusetts Institute of Technology 241 unknown 140501 Gm20552 Scnn1d - 4 E2|4 87.66 cM sodium channel, nonvoltage-gated 1, delta pseudo 14991 Mm.14437 NM_013819 ENSMUSG00000016206 H2-M3 H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2 - 17 B1|17 19.16 cM histocompatibility 2, M region locus 3 protein-coding 100417668 Gm18749 - - 12|12 D3 Down syndrome critical region gene 3 pseudogene pseudo 108168141 Gm46443 - - 14 A3|14 40S ribosomal protein S25 pseudogene pseudo 328417 Mm.379357 NM_001145978 ENSMUSG00000054509 Parp4 Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193 - 14|14 C3 poly (ADP-ribose) polymerase family, member 4 protein-coding 102638133 XR_374147 Gm34769 - - 2 A3|2 predicted gene, 34769 ncRNA 60910 D8Mit86 - - 8 56.18 cM DNA segment, Chr 8, Massachusetts Institute of Technology 86 unknown 100043989 Vh7183.a34psi.56 IGHV5-7-3 - 12|12 immunoglobulin variable segment pseudogene pseudo 70078 Mm.439927 NM_023554 ENSMUSG00000063200 Nol7 2210008F15Rik|5730556I21Rik|NOP27|RARG-1 - 13|13 A4 nucleolar protein 7 protein-coding 26466 Mm.195092 NM_011981 ENSMUSG00000049421 Zfp260 AI480997|Ozrf1|PEX1|Zfp63|Znf260 - 7 B1|7 17.26 cM zinc finger protein 260 protein-coding 692170 Igkv2-105 hd24 - 6|6 C1 immunoglobulin kappa chain variable 2-105 pseudo 75680 2310007H06Rik - - - RIKEN cDNA 2310007H06 gene protein-coding 105246952 XR_001784911 Gm42145 - - 5 E5|5 predicted gene, 42145 ncRNA 67498 Mm.300079 NM_026200 ENSMUSG00000022342 Kcnv1 2700023A03Rik|vibe - 15|15 B3.3 potassium channel, subfamily V, member 1 protein-coding 108167875 XR_001780142 Gm11399 - - 11 A1|11 2.2 cM predicted gene 11399 ncRNA 71863 Mm.179627 NM_027966 ENSMUSG00000036574 Tex44 1700019O17Rik - 1|1 C5 testis expressed 44 protein-coding 19110 Mm.18607 NM_011165 ENSMUSG00000005891 Prl4a1 AA409771|Ghd23|PLP-A|Prlpa - 13 A3.1|13 12.66 cM prolactin family 4, subfamily a, member 1 protein-coding 245391 Gm4986 EG245391 - X|X A4 ribosomal protein L17 pseudogene pseudo 777678 Ighd6-2 Gm17486 - 12|12 F1 immunoglobulin heavy diversity 6-2 pseudo 102632547 Gm12984 - - 4|4 67.3 cM predicted gene 12984 ncRNA 102634564 XR_387073 Gm32113 - - X F1|X predicted gene, 32113 ncRNA 664835 Gm13422 - - 2|2 A3 predicted gene 13422 pseudo 252974 Mm.221237 NM_145855 ENSMUSG00000069581 Tspear C330046G03Rik|ORF65|TSP-EAR|Tnep1 - 10|10 C1 thrombospondin type laminin G domain and EAR repeats protein-coding 102637105 Gm34001 - - 5|5 predicted gene, 34001 ncRNA 102637430 Mm.209619 NR_153189 ENSMUSG00000104336 Gm34240 - - 3 E1|3 predicted gene, 34240 ncRNA 546387 Mm.328394 XR_387091 Gm5946 EG546387 - X|X F3 predicted gene 5946 unknown 106336 AU022167 - - - expressed sequence AU022167 protein-coding 78287 Mm.290734 NM_030081 ENSMUSG00000014550 Rbsn 5330426D11Rik|Zfyve20 - 6|6 D1 rabenosyn, RAB effector protein-coding 100101435 Cia36 - - - collagen induced arthritis QTL 36 unknown 105246759 Gm42001 - - 3|3 predicted gene, 42001 protein-coding 100503071 XM_006517005 Gm19536 - - 13 A5|13 25.71 cM predicted gene, 19536 protein-coding 98711 Mm.274376 NM_133832 ENSMUSG00000025921 Rdh10 3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp - 1 A3|1 4.94 cM retinol dehydrogenase 10 (all-trans) protein-coding 75018 Mm.487200 4930473M17Rik - - - RIKEN cDNA 4930473M17 gene protein-coding 665405 Gm7624 EG665405 - 8|8 B3.1 predicted gene 7624 pseudo 105243109 Mm.277982 XR_870092 Gm39121 Gm45230 - 8 A1.1|8 predicted gene, 39121 ncRNA 110628 Rip - - - regulation of phenobarbitol-inducible P450 unknown 109866 Ly34 Ly-34 - - lymphocyte antigen 34 protein-coding 100502673 Gm19316 - - 16|16 22.67 cM predicted gene, 19316 ncRNA 52915 Mm.1144 NM_028601 ENSMUSG00000041164 Zmiz2 Zimp7 - 11 A1|11 3.95 cM zinc finger, MIZ-type containing 2 protein-coding 12286 Mm.334658 NM_007578 ENSMUSG00000034656 Cacna1a APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg - 8 C2|8 40.95 cM calcium channel, voltage-dependent, P/Q type, alpha 1A subunit protein-coding 52427 D4Ertd111e - - - DNA segment, Chr 4, ERATO Doi 111, expressed unknown 320124 B930095M22Rik - - 10|10 RIKEN cDNA B930095M22 gene protein-coding 232962 Mm.377249 NM_206869 ENSMUSG00000092473 Vmn1r180 Gm475|V1rd16 - 7|7 A3 vomeronasal 1 receptor 180 protein-coding 116758 Drb5 - - - dopamine receptor binding 5 unknown 105246129 Mm.450819 Gm15597 - - 17|17 14.61 cM predicted gene 15597 ncRNA 100034796 Nctm2 - - - Nakano cataract modifier 2 unknown 105245254 Gm16271 - - 10|10 43.33 cM predicted gene 16271 ncRNA 100042384 Trav4-1 Gm3814|Trav4-1p - 14|14 C2 T cell receptor alpha variable 4-1 pseudo 27648 D0Hgu14 - - - DNA segment, Human Genetics Unit 14 unknown 434065 Mm.333241 NM_001033491 ENSMUSG00000090254 Gm1965 AU018164|AU021089|AU023851|C86079 - 6|6 D1 predicted gene 1965 ncRNA 110342 Tel14q - - - telomeric sequence, Chr 14, q arm protein-coding 625599 Mm.390785 NM_001177524 ENSMUSG00000068349 Gml EG625599|HemT - 15|15 D3 glycosylphosphatidylinositol anchored molecule like protein-coding 100124462 NR_030541 ENSMUSG00000078017 Mir883a Mirn883a|mir-883a - X A7.1|X microRNA 883a ncRNA 105244225 XR_866520 Gm39872 - - 2 E1|2 predicted gene, 39872 ncRNA 11465 Mm.196173 NM_009609 ENSMUSG00000062825 Actg1 AL023024|Actg|Actl|E51 - 11|11 E2 actin, gamma, cytoplasmic 1 protein-coding 70510 Mm.261818 NM_027445 ENSMUSG00000040746 Rnf167 0610010G05Rik|5730408C10Rik|AU019305|AV328608 - 11|11 B3 ring finger protein 167 protein-coding 57914 Mm.35771 NM_016715 ENSMUSG00000033467 Crlf2 CRLM2|Ly114|Tpte2|Tslpr - 5|5 F cytokine receptor-like factor 2 protein-coding 102467319 n-THgtg4 n-Th4 - 2 E5|2 nuclear encoded tRNA histidine 4 (anticodon GTG) tRNA 102635862 XR_382122 Gm33094 - - 13 A3.1|13 predicted gene, 33094 ncRNA 53799 DXHXS144E DXPas6|DXS144Eh - - DNA segment, Chr X, human DXS144E unknown 51952 D17Ertd29e - - 17 17.98 cM DNA segment, Chr 17, ERATO Doi 29, expressed unknown 14590 Mm.20461 NM_010281 ENSMUSG00000073987 Ggh gamma-GH - 4|4 A3 gamma-glutamyl hydrolase protein-coding 52317 D7Ertd388e - - 7 67.42 cM DNA segment, Chr 7, ERATO Doi 388, expressed unknown 209645 Mm.149539 NM_178663 ENSMUSG00000048186 Bend7 1110017O21Rik|E130319B15Rik - 2|2 A1 BEN domain containing 7 protein-coding 668558 Gm9241 EG668558 - 12|12 A1.2 predicted gene 9241 protein-coding 20565 sll1 sll-1 - - sex linked lethal 1 unknown 100503493 Gm19726 - - 6|6 46.95 cM UPF0197 transmembrane protein C11orf10 homolog pseudo 666697 Gm8245 EG666697 - 13|13 A3.3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 76793 Mm.22548 NM_175246 ENSMUSG00000050213 Snip1 2410133M08Rik - 4|4 D2.2 Smad nuclear interacting protein 1 protein-coding 105244546 XR_001783973 Gm40139 - - 3 G1|3 predicted gene, 40139 ncRNA 112397 Tmevd5 - - 11 54.6 cM Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 unknown 61990 D9Mit311 - - 9 68.74 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 311 unknown 171216 Alcw4 Aw1 - 2 38.54 cM alcohol withdrawal 4 unknown 78209 4930556H05Rik - - - RIKEN cDNA 4930556H05 gene protein-coding 105245050 XR_872946 Gm40559 - - 12 E|12 predicted gene, 40559 ncRNA 102631747 Gm30010 - - 11|11 predicted gene, 30010 ncRNA 102639891 Gm36095 - - X|X predicted gene, 36095 ncRNA 234683 Mm.237966 NM_172760 ENSMUSG00000014791 Elmo3 9930107J06|BC058752|CED-12|Ced12 - 8|8 D3 engulfment and cell motility 3 protein-coding 105244249 Gm39892 - - 2|2 predicted gene, 39892 ncRNA 100035119 Obq21 - - 18 57.53 cM obesity QTL 21 unknown 258004 Olfr1435-ps1 MOR133-4P - 19|19 A olfactory receptor 1435, pseudogene 1 pseudo 18208 Mm.39095 NM_008744 ENSMUSG00000020902 Ntn1 AI561871|BC019633|Netrin-1 - 11|11 B3 netrin 1 protein-coding 99167 Mm.200783 NM_138744 ENSMUSG00000036825 Ssx2ip AU014939|AU042321|Adip - 3|3 H2 synovial sarcoma, X 2 interacting protein protein-coding 19330 Mm.132802 NM_181070 ENSMUSG00000073639 Rab18 AA959686 - 18 A1|18 4.53 cM RAB18, member RAS oncogene family protein-coding 399582 C730045M19Rik - - - RIKEN cDNA C730045M19 gene protein-coding 100417629 Gm14997 - - X|X F1 presenilin associated, rhomboid-like pseudogene pseudo 111292 Hmgn2-rs6 Hmg17-rs6 - - high mobility group nucleosomal binding domain 2, related sequence 6 pseudo 233168 Mm.379390 NM_183167 ENSMUSG00000056383 AI987944 - - 7|7 B3 expressed sequence AI987944 protein-coding 100035267 Bw24 Bmq2 - - body weight QTL 24 unknown 100417473 Gm17101 Hspd1-17p - 1|1 A1 heat shock protein 1 (chaperonin) pseudogene 17 pseudo 112128 Bgeq12 - - - body growth early QTL 12 unknown 100035319 Orgwt6 - - - organ weight 6 unknown 105242863 XR_881873 Gm38954 - - 7 A3|7 predicted gene, 38954 ncRNA 100384883 Gm16166 - - 10 D2|10 68.89 cM ribosomal protein L7A pseudogene pseudo 108168709 XR_001783010 LOC108168709 - - - uncharacterized LOC108168709 ncRNA 52486 D19Rp19e D19Rp19 - - DNA segment, Chr 19, Roswell Park 19, expressed unknown 105246249 XR_876719 Gm41557 - - 17 A3.3|17 predicted gene, 41557 ncRNA 735290 NR_030487 ENSMUSG00000076217 Mir706 Mirn706|mir-706|mmu-mir-706 - 6 F1|6 microRNA 706 ncRNA 100312515 Vmn1r-ps86 - - 7 A3|7 14.24 cM vomeronasal 1 receptor, pseudogene 86 pseudo 116612 D7Tem14 - - - DNA segment, Chr 7, Tempel 14 unknown 52305 Mm.334107 D1Ertd259e - - 1 18.42 cM DNA segment, Chr 1, ERATO Doi 259, expressed unknown 492934 Tshp8 QTL-TSH7.2 - - tooth shape 8 unknown 106064 Mm.21299 NM_145930 ENSMUSG00000041935 AW549877 AI195826 - 15|15 A1 expressed sequence AW549877 protein-coding 432721 Rpl29-ps2 EG432721|Gm5443 - 13|13 A1 ribosomal protein L29, pseudogene 2 pseudo 18350 Mm.246540 NM_146946 ENSMUSG00000111021 Olfr50 ID3|MOR136-6 - 2|2 B olfactory receptor 50 protein-coding 108168801 XR_001783494 Gm46768 - - 2 G1|2 predicted gene, 46768 ncRNA 85220 D16Mit171 - - 16 33.97 cM DNA segment, Chr 16, Massachusetts Institute of Technology 171 unknown 102093 Mm.237296 NM_199446 ENSMUSG00000036879 Phkb AI463271 - 8 C3|8 41.61 cM phosphorylase kinase beta protein-coding 109082 Mm.18638 NM_175401 ENSMUSG00000037816 Fbxw17 1110064L07Rik|C85886 - 13|13 A5 F-box and WD-40 domain protein 17 protein-coding 72536 Mm.119680 NM_145968 ENSMUSG00000033450 Tagap 2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1 - 17|17 A1 T cell activation Rho GTPase activating protein protein-coding 105245879 XR_001781710 Gm41262 - - 15 A1|15 predicted gene, 41262 ncRNA 109808 H21 H-21 - - histocompatibility 21 protein-coding 100040695 Vmn2r-ps143 - - Y|Y B vomeronasal 2, receptor, pseudogene 143 pseudo 668888 Amd-ps7 EG668888 - 17|17 E5 S-adenosylmethionine decarboxylase, pseudogene 7 pseudo 780890 Ighv1-38 - - 12|12 F2 immunoglobulin heavy variable V1-38 pseudo 667712 XM_017315670 Gm8777 EG667712 - 13|13 A5 predicted gene 8777 protein-coding 76718 Mm.69030 NM_029714 ENSMUSG00000049123 Catsperg2 1700067C01Rik|CATSPERG - 7|7 B1 cation channel sperm associated auxiliary subunit gamma 2 protein-coding 62961 D13Mit278 - - 13 25.45 cM DNA Segment, Chr 13, Massachusetts Institute of Technology 278 unknown 100038371 Mm.133328 NR_026798 Zfp389 - - 13 A3.1|13 zinc finger protein 389 pseudo 102465615 NR_105983 ENSMUSG00000098422 Mir7016 Gm27994|mmu-mir-7016 - 4|4 D2.2 microRNA 7016 ncRNA 723910 NR_029776 ENSMUSG00000065503 Mir351 Mirn351|mmu-mir-351 - X|X A5 microRNA 351 ncRNA 105246187 Gm41520 - - 17|17 predicted gene, 41520 ncRNA 100418130 Gm19021 - - 6|6 E3 Yip1 interacting factor homolog A pseudogene pseudo 102635014 Gm32456 - - 11|11 predicted gene, 32456 pseudo 74568 Mm.207971 NM_029005 ENSMUSG00000012519 Mlkl 9130019I15Rik - 8|8 E1 mixed lineage kinase domain-like protein-coding 100041140 Gm3160 - - 8 A1.1|8 high mobility group protein 1 pseudogene pseudo 105246969 XR_880593 Gm42158 - - 5 F|5 predicted gene, 42158 ncRNA 102638723 XR_383318 ENSMUSG00000114577 Gm35217 - - 14 A3|14 predicted gene, 35217 ncRNA 218975 Mm.212297 NM_178684 ENSMUSG00000021840 Mapk1ip1l 9130202B12|C130032J12Rik - 14|14 C1 mitogen-activated protein kinase 1 interacting protein 1-like protein-coding 171388 Mm.331209 NM_134253 ENSMUSG00000028115 Bnipl 1700128A13Rik|BNIP-S|BNIPL1|BNIPL2|PP73|PP753 - 3|3 F2.1 BCL2/adenovirus E1B 19kD interacting protein like protein-coding 108266 Uba1y-rs2 Ube1y1-rs2 - - ubiquitin-activating enzyme, Chr Y related sequence 2 pseudo 73261 Mm.486226 NM_028484 ENSMUSG00000005983 1700037C18Rik 2810022L20Rik - 16|16 A1 RIKEN cDNA 1700037C18 gene protein-coding 102637699 XR_383567 Gm34442 - - 14 D2|14 predicted gene, 34442 ncRNA 381867 Mm.483986 NM_001289817 ENSMUSG00000100512 Ovol3 Gm1903|movo3 - 7|7 B1 ovo like zinc finger 3 protein-coding 105243141 Gm39142 - - 8|8 predicted gene, 39142 ncRNA 112077 Mop3 - - - morphine preference 3 unknown 723902 NR_029825 ENSMUSG00000065434 Mir7-1 Mir7a1|Mirn7-1|miR-7a1|mir-7a-1|mmu-miR-7a1|mmu-mir-7-1 - 13|13 B1 microRNA 7-1 ncRNA 108168418 XR_001782684 Gm46657 - - 19 D2|19 predicted gene, 46657 ncRNA 67131 Mm.390367 NM_025988 ENSMUSG00000056938 Acbd4 2010009P05Rik|2010015A21Rik|AI849317 - 11|11 E1 acyl-Coenzyme A binding domain containing 4 protein-coding 100049606 Fmtq4 - - - femur mechanical trait QTL 4 unknown 105245266 XR_871964 Gm40744 - - 10 C2|10 predicted gene, 40744 ncRNA 269473 Mm.34855 NM_001025067 ENSMUSG00000032913 Lrig2 4632419I10Rik|BB096938|LIG-2 - 3|3 F2.2 leucine-rich repeats and immunoglobulin-like domains 2 protein-coding 100316673 NR_035424 ENSMUSG00000080411 Mir1193 Mirn1193|mir-1193|mmu-mir-1193 - 12 F1|12 60.56 cM microRNA 1193 ncRNA 320141 Mm.446268 9330156P08Rik - - 1|1 RIKEN cDNA 9330156P08 gene protein-coding 100035796 Lptl1 - - - LPS-induced pulmonary TNF-alpha locus 1 unknown 628586 Mm.285351 NM_001039235 Gm6899 EG628586 - 11 A3.3|11 predicted gene 6899 unknown 14204 Mm.2565 NM_010215 ENSMUSG00000074141 Il4i1 Fig1|Fig1-ps|LAAO|LAO - 7 B3|7 28.93 cM interleukin 4 induced 1 protein-coding 677501 Gm9719 - - 9 D|9 predicted gene 9719 pseudo 382099 Gm5161 EG382099 - 9|9 E4 predicted pseudogene 5161 pseudo 22158 Mm.291783 NM_011657 ENSMUSG00000001521 Tulp3 2310022L06Rik|AI316887 - 6 F3|6 62.96 cM tubby-like protein 3 protein-coding 81840 Mm.34113 NM_030889 ENSMUSG00000029093 Sorcs2 N28137|mKIAA1329 - 5|5 B3 sortilin-related VPS10 domain containing receptor 2 protein-coding 329369 Mm.90790 XR_374175 Snhg7os 5730588L14Rik - 2|2 A3 small nucleolar RNA host gene 7, opposite strand unknown 102631618 XR_386385 Gm29913 - - 18 E3|18 predicted gene, 29913 ncRNA 96915 Mm.442000 C85403 - - - expressed sequence C85403 unknown 100035688 Clas2 - - - carcinogen-induced lung adenoma susceptibility 2 unknown 668466 Gm12312 - - 11|11 B3 FGFR1 oncogene partner 2 pseudogene pseudo 15033 Mm.426002 XR_390287 H2-T18 H-2T18|MumuTL|TLAg|Tla - - histocompatibility 2, T region locus 18 protein-coding 545257 Gm5821 EG545257 - 18 D3|18 high mobility group box 2 pseudogene pseudo 258338 Mm.354180 NM_146341 ENSMUSG00000068806 Olfr1259 MOR232-9 - 2|2 E1 olfactory receptor 1259 protein-coding 381813 Mm.39750 NM_201371 ENSMUSG00000030350 Prmt8 Hrmt1l3|Hrmt1l4 - 6|6 F3 protein arginine N-methyltransferase 8 protein-coding 102635023 XR_385566 Gm32463 - - 17 B1|17 predicted gene, 32463 ncRNA 102632498 XR_383350 Gm30556 - - 14 B|14 predicted gene, 30556 ncRNA 12847 Mm.30041 NM_009938 ENSMUSG00000026553 Copa AU040324|xenin - 1 H3|1 79.54 cM coatomer protein complex subunit alpha protein-coding 319744 E230020D15Rik - - 8|8 RIKEN cDNA E230020D15 gene protein-coding 102638348 XR_383476 Gm34935 - - 14 D1|14 predicted gene, 34935 ncRNA 85219 D17Mit197 - - 17 11.4 cM DNA segment, Chr 17, Massachusetts Institute of Technology 197 unknown 102640707 Gm15793 - - 1 C3|1 33.65 cM predicted gene 15793 pseudo 100417207 Gm18451 - - 5|5 C1 crumbs homolog 1 pseudogene pseudo 102635894 XR_376901 Gm33114 - - 5 B3|5 predicted gene, 33114 ncRNA 105245131 Mm.208111 XR_871581 Gm40625 - - 10 B1|10 predicted gene, 40625 ncRNA 100418053 Gm18968 - - 12|12 D3 MOCO sulphurase C-terminal domain containing 2 pseudogene pseudo 101055879 LOC101055879 - - X A2 X-linked lymphocyte-regulated protein PM1-like pseudo 108168148 XM_017316250 ENSMUSG00000094925 LOC108168148 - - 14 B uncharacterized LOC108168148 protein-coding 17423 Mm.4084 NM_010811 ENSMUSG00000039308 Ndst2 Mndns|NDST-2 - 14|14 A3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 protein-coding 77803 Mm.159995 NM_029984 ENSMUSG00000042655 Fam159b A930021C24Rik|Shisal2b - 13|13 D1 family with sequence similarity 159, member B protein-coding 668353 Gm9121 EG668353 - 3|3 F2.1 TD and POZ domain containing pseudogene pseudo 102632560 XR_387390 Gm38446 - - 1 E4|1 predicted gene, 38446 ncRNA 57837 Mm.21096 NM_022313 ENSMUSG00000020832 Eral1 2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W - 11|11 B5 Era (G-protein)-like 1 (E. coli) protein-coding 257810 Olfr269-ps1 GA_x5J8B7W5BNN-892919-892147 - 4|4 B1 olfactory receptor 269, pseudogene 1 pseudo 442819 F830031D20Rik - - 15|15 E1 RIKEN cDNA F830031D20 gene protein-coding 100418076 Gm18984 - - 1|1 A1 general transcription factor IIIC, polypeptide 3 pseudogene pseudo 320787 9130221L21Rik - - 13|13 RIKEN cDNA 9130221L21 gene protein-coding 105245321 XR_872155 Gm40796 - - 10 D3|10 predicted gene, 40796 ncRNA 102632135 Mm.458814 Gm30289 - - 3|3 predicted gene, 30289 protein-coding 100042588 Mm.74650 Gm3916 - - 19 C1|19 predicted gene 3916 unknown 100418161 Gm19044 - - X|X C1 phosphoenolpyruvate carboxykinase 2 (mitochondrial) pseudogene pseudo 545032 LOC545032 - - 14|14 B uncharacterized LOC545032 protein-coding 102641621 XR_872580 2900060N12Rik - - 12|12 A1.3 RIKEN cDNA 2900060N12 gene ncRNA 13095 Mm.20764 NM_007815 ENSMUSG00000003053 Cyp2c29 AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C - 19 C3|19 33.91 cM cytochrome P450, family 2, subfamily c, polypeptide 29 protein-coding 68724 Mm.174998 NM_026823 ENSMUSG00000026426 Arl8a 1110033P22Rik|Arl10b|gie2 - 1|1 E4 ADP-ribosylation factor-like 8A protein-coding 21802 Mm.137222 NM_031199 ENSMUSG00000029999 Tgfa wa-1|wa1 - 6 D1|6 37.62 cM transforming growth factor alpha protein-coding 12048 Mm.238213 NM_009743 ENSMUSG00000007659 Bcl2l1 Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1 - 2 75.41 cM|2 H1 BCL2-like 1 protein-coding 80861 Mm.271830 NM_030150 ENSMUSG00000017830 Dhx58 B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3 - 11 D|11 63.52 cM DEXH (Asp-Glu-X-His) box polypeptide 58 protein-coding 102637543 XR_374936 Gm34325 - - 2 E5|2 predicted gene, 34325 ncRNA 105242686 XR_869183 Gm38835 - - 6 C2|6 predicted gene, 38835 ncRNA 75735 Mm.24742 NM_023792 ENSMUSG00000033610 Pank1 Pank|Pank1b - 19 C1|19 pantothenate kinase 1 protein-coding 625193 Gm6563 EG625193 - 19|19 B SAP domain containing ribonucleoprotein pseudogene pseudo 327957 Mm.164325 NM_001045526 ENSMUSG00000057135 Scimp A430084P05Rik - 11|11 B3 SLP adaptor and CSK interacting membrane protein protein-coding 100416282 Gm18018 - - 3|3 C ribosomal protein L17 pseudogene pseudo 102636184 XR_378522 Gm33323 - - 7 F3|7 predicted gene, 33323 ncRNA 320162 Mm.30524 NM_177088 ENSMUSG00000018372 Cep95 4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik - 11|11 E1 centrosomal protein 95 protein-coding 244551 Mm.216740 NM_194059 ENSMUSG00000056155 Nanos3 nos3 - 8|8 C2 nanos C2HC-type zinc finger 3 protein-coding 654493 Mm.446168 8030494B02Rik - - 4 D3|4 Riken cDNA 8030494B02 gene ncRNA 100502985 Mm.465338 NR_045783 ENSMUSG00000097404 Gm10814 - - 19|19 A predicted gene 10814 ncRNA 111978 El2 El-2 - - epilepsy 2 unknown 108168797 XR_001783485 Gm46767 - - 2 F3|2 predicted gene, 46767 ncRNA 66042 Mm.43375 NM_025312 ENSMUSG00000036169 Sostdc1 0610006G05Rik|Sostl|USAG-1|Wise|ectodin - 12|12 A3 sclerostin domain containing 1 protein-coding 73748 Mm.485018 NM_028638 ENSMUSG00000056880 Gadl1 1110027M19Rik|ADC|CSADC - 9|9 F3 glutamate decarboxylase-like 1 protein-coding 107549 Mlvi3 Mlvi-3 - - Moloney-MuLV integration site 3 protein-coding 100502853 Gm14002 - - 2|2 61.29 cM predicted gene 14002 ncRNA 109543 Li - - - lined unknown 102635802 XM_006521646 Gm33049 - - 15 E3|15 predicted gene, 33049 protein-coding 100043043 Mm.482053 NM_001167159 ENSMUSG00000093871 Gm4187 Vmn1r146 - 7 A3|7 predicted gene 4187 protein-coding 12582 cdm - - - cadmium resistance unknown 71250 4933428C20Rik - - 7|7 E3 RIKEN cDNA 4933428C20 gene protein-coding 100113457 Secia7 - - - small effect CIA locus 7 unknown 20922 Mm.622 NM_009296 ENSMUSG00000020485 Supt4a AL022777|Supt4h|Supt4h1|Supt4h1a - 11 C|11 52.2 cM suppressor of Ty 4A protein-coding 108167608 Gm46081 - - 1 H5|1 predicted gene, 46081 pseudo 102641657 LOC102641657 - - - H-2 class I histocompatibility antigen, D-B alpha chain-like protein-coding 72167 Mm.273257 NM_028138 ENSMUSG00000024246 Thumpd2 2810025A12Rik - 17|17 E3 THUMP domain containing 2 protein-coding 111542 Pmv24 Pmv-24 - - polytropic murine leukemia virus 24 other 668974 Psmb6-ps EG668974|Sfc1 - X A1.1|X 3.59 cM proteasome (prosome, macropain) subunit, beta type 6, pseudogene pseudo 235106 Mm.283138 NM_172290 ENSMUSG00000059974 Ntm 6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390 - 9|9 A4 neurotrimin protein-coding 330677 Mm.265130 NR_002452 ENSMUSG00000087090 Nctc1 9530074L01|Rhit1 - 7 F5|7 87.96 cM non-coding transcript 1 ncRNA 102636332 XR_383466 Gm33430 - - 14 C3|14 predicted gene, 33430 ncRNA 102633100 XM_017321257 ENSMUSG00000074011 Gm7682 665551|Gm31009 - 5 E3|5 predicted gene 7682 protein-coding 18986 Mm.245261 NM_011137 ENSMUSG00000026565 Pou2f1 2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1 - 1 H2.3|1 73.21 cM POU domain, class 2, transcription factor 1 protein-coding 102637188 XR_880324 Gm34065 - - 11 E2|11 predicted gene, 34065 ncRNA 20481 Mm.28520 NM_011385 ENSMUSG00000029050 Ski 2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088 - 4 E2|4 86.17 cM ski sarcoma viral oncogene homolog (avian) protein-coding 102636371 Gm33456 - - 9 A4|9 predicted gene, 33456 pseudo 100035055 Lgaq3 - - - late growth adjusted QTL 3 unknown 100416271 Gm15766 - - 6|6 G3 ribosomal protein L5 pseudogene pseudo 27781 57K16R - - - DNA segment, 57K16R (Research Genetics) unknown 62908 D10Mit204 - - 10 67.79 cM DNA segment, Chr 10, Massachusetts Institute of Technology 204 unknown 105247012 XR_880709 Gm42196 Gm45681 - 3 A3|3 predicted gene, 42196 ncRNA 108286 Psma3-rs2 Lmpc8-rs2 - - proteasome (prosome, macropain) subunit, alpha type 3, related sequence 2 pseudo 100035882 Ossc2 - - 14 45.31 cM osteosarcoma susceptibility 2 unknown 56219 Mm.30978 NM_019578 ENSMUSG00000028838 Extl1 D430033M16Rik - 4 D3|4 66.63 cM exostoses (multiple)-like 1 protein-coding 77271 Mm.129691 9430024F10Rik B930059L03Rik - 12|12 F1 RIKEN cDNA 9430024F10 gene unknown 108167987 LOC108167987 - - 12 A1.3 zinc finger protein 709-like pseudo 110205 Igk-Ef2 - - - immunoglobulin kappa chain Ef2 other 102631547 LOC102631547 - - 2 G3 methyltransferase-like protein 23 pseudo 100503815 Rpl39-ps Gm15430 - 15 F3|15 57.75 cM ribosomal protein L39, pseudogene pseudo 434676 NM_001281526 ENSMUSG00000095232 Scgb1b19 Abpa19|EG434676|Gm5632 - 7|7 B1 secretoglobin, family 1B, member 19 protein-coding 102467457 n-TAcgc7 n-Ta26 - X F1|X nuclear encoded tRNA alanine 7 (anticodon CGC) tRNA 619210 Rmcf2 - - - resistance to MCF virus 2 other 19290 Mm.231802 NM_008989 ENSMUSG00000043991 Pura CAGER-1|Pur-alpha|ssCRE-BP - 18|18 B2 purine rich element binding protein A protein-coding 72565 Mm.68819 NM_028283 ENSMUSG00000034485 Uaca 2700059D02Rik|nucling - 9|9 B uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 227696 Mm.297949 NM_172267 ENSMUSG00000079484 Phyhd1 - - 2|2 B phytanoyl-CoA dioxygenase domain containing 1 protein-coding 100036013 Dshv2 - - - dorsal hippocampal volume 2 unknown 100503339 Gm19642 - - 1|1 58.45 cM myeloma-overexpressed gene 2 protein homolog pseudo 102635948 Mm.389985 XR_389973 ENSMUSG00000086742 LOC102635948 - - 7 F4 uncharacterized LOC102635948 ncRNA 100416670 Gm18181 - - 1|1 E2.2 survival motor neuron 1 pseudogene pseudo 20187 Mm.335391 NM_013649 ENSMUSG00000032547 Ryk AW536699|ERK-3|Vik - 9 F1|9 54.72 cM receptor-like tyrosine kinase protein-coding 14174 Mm.4947 NM_008007 ENSMUSG00000031074 Fgf3 Fgf-3|Int-2|Int-P - 7 F5|7 88.85 cM fibroblast growth factor 3 protein-coding 232816 Mm.27442 NM_170759 ENSMUSG00000074406 Zfp628 Zec|Znf628 - 7|7 A1 zinc finger protein 628 protein-coding 102638555 XR_001779041 Gm38510 - - 1 C5|1 predicted gene, 38510 protein-coding 245866 Mm.34034 NM_172150 ENSMUSG00000017858 Ift52 BC037708|NGD5 - 2|2 H2 intraflagellar transport 52 protein-coding 12396 Mm.29914 NM_009823 ENSMUSG00000038533 Cbfa2t2 A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1 - 2|2 H1 core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human) protein-coding 320176 Mm.406716 NR_045330 ENSMUSG00000097735 D930032P07Rik - - 19|19 C1 RIKEN cDNA D930032P07 gene ncRNA 78615 Mm.427886 XR_376578 9530034E10Rik - - 4|4 D2.1 RIKEN cDNA 9530034E10 gene unknown 100125599 Cyp2j14-ps Gm12659 - 4|4 C5 cytochrome P450, family 2, subfamily j, member 14, pseudogene pseudo 19087 Mm.253102 NM_008924 ENSMUSG00000032601 Prkar2a 1110061A24Rik|AI317181|AI836829|RII(alpha) - 9|9 F2 protein kinase, cAMP dependent regulatory, type II alpha protein-coding 15221 Mm.4758 NM_010425 ENSMUSG00000067261 Foxd3 CWH3|Genesis|Hfh2 - 4 C6|4 45.71 cM forkhead box D3 protein-coding 62360 D10Mit279 - - 10 3.01 cM DNA Segment, Chr 10 Massachusetts Institute of Technology 279 unknown 621629 Gm6245 EG621629 - 13|13 A3.3 UBX domain protein 2A pseudogene pseudo 17702 Mm.1763 NM_013601 ENSMUSG00000021469 Msx2 BB122635|Hox-8|Hox8|Hox8.1 - 13 B1|13 27.84 cM msh homeobox 2 protein-coding 18126 Mm.2893 NM_010927 ENSMUSG00000020826 Nos2 MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS - 11 B5|11 46.74 cM nitric oxide synthase 2, inducible protein-coding 62870 D11Mit279 - - 11 43.59 cM DNA segment, Chr 11, Massachusetts Institute of Technology 279 unknown 20523 Mm.34953 NM_011398 ENSMUSG00000031105 Slc25a14 BMCP1|UCP5|UCP5L|UCP5S - X A5|X 25.69 cM solute carrier family 25 (mitochondrial carrier, brain), member 14 protein-coding 13081 Mm.6575 NM_009996 ENSMUSG00000038567 Cyp24a1 24-OHase|CP24|Cyp24 - 2 H3|2 91.91 cM cytochrome P450, family 24, subfamily a, polypeptide 1 protein-coding 73598 Mm.34166 NM_198000 ENSMUSG00000044320 1700001O22Rik 1700113K14Rik|4930549G18Rik - 2|2 B RIKEN cDNA 1700001O22 gene protein-coding 320509 Mm.253957 NM_177179 9930022D16Rik - - 11|11 E1 RIKEN cDNA 9930022D16 gene unknown 75677 Mm.390033 NM_029383 ENSMUSG00000038064 Cldn22 2210404A22Rik|5330431C14Rik|9530051B05Rik - 8|8 B1.1 claudin 22 protein-coding 28012 D2Wsu107e - - 2 75.41 cM DNA segment, Chr 2, Wayne State University 107, expressed unknown 224792 Mm.23478 NM_001081178 ENSMUSG00000056492 Adgrf5 8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758 - 17|17 B3 adhesion G protein-coupled receptor F5 protein-coding 67838 Mm.37516 NM_026400 ENSMUSG00000004460 Dnajb11 1810031F23Rik|ABBP-2|AL024055|Dj9|ERdj3|ERj3p - 16|16 B1 DnaJ heat shock protein family (Hsp40) member B11 protein-coding 53857 Mm.32884 NM_017379 ENSMUSG00000030137 Tuba8 - - 6|6 F1 tubulin, alpha 8 protein-coding 383690 Gm13469 - - 2|2 B predicted gene 13469 pseudo 68173 Mm.444727 NM_026595 Ppifos 4930520F12Rik|Ppifs - 14|14 A3 peptidylprolyl isomerase F, opposite strand ncRNA 15969 Mm.377090 NM_206871 ENSMUSG00000101252 Ifna6 IFNa8/6|Ifa6|Ifa8|Ifna8 - 4 C4|4 42.03 cM interferon alpha 6 protein-coding 69002 Mm.293947 NR_130956 ENSMUSG00000097383 1500026H17Rik - - 10|10 C2 RIKEN cDNA 1500026H17 gene ncRNA 100035391 Mskt3 - - - musculoskeletal traits 3 unknown 27934 D2Nds1 - - 2 51.62 cM DNA segment, Chr 2, Nuffield Department of Surgery 1 unknown 15399 Mm.131 NM_010451 ENSMUSG00000014704 Hoxa2 AI324701|HOX1.11|Hox-1.11 - 6 B3|6 25.4 cM homeobox A2 protein-coding 100035468 Bdln7 - - - body length 7 unknown 100035638 Pbwg21 - - - postnatal body weight growth 21 unknown 385024 XM_006509824 Gm5373 - - 8 B3.3|8 predicted gene 5373 protein-coding 20266 Mm.1418 NM_011322 ENSMUSG00000019194 Scn1b - - 7 B1|7 19.3 cM sodium channel, voltage-gated, type I, beta protein-coding 18041 Mm.283604 NM_010911 ENSMUSG00000027618 Nfs1 AA987187|m-Nfs1|m-Nfsl - 2|2 H1 nitrogen fixation gene 1 (S. cerevisiae) protein-coding 109299 Mm.389259 NM_001256521 Tmem250-ps AI551216|C330006A16Rik - 2|2 A3 transmembrane protein 250, pseudogene protein-coding 442848 Mm.406906 E230014E18Rik - - - RIKEN cDNA E230014E18 gene protein-coding 105242409 XR_001784797 Gm43131 - - 5 A1|5 predicted gene 43131 ncRNA 108168716 LOC108168716 - - - non-histone chromosomal protein HMG-14 pseudogene pseudo 108167998 XR_001780604 Gm46348 - - 12 B1|12 predicted gene, 46348 ncRNA 100503954 Gm12462 - - 4|4 23.56 cM predicted gene 12462 ncRNA 109270 Mm.291372 NM_146061 ENSMUSG00000036106 Prr5 AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1 - 15|15 E2 proline rich 5 (renal) protein-coding 331063 Mm.273185 NM_177912 ENSMUSG00000056293 Gsdmc2 9130023H10|AI987692 - 15|15 D1 gasdermin C2 protein-coding 74893 4930453C13Rik - - 13|13 RIKEN cDNA 4930453C13 gene protein-coding 100035355 Fecq4 - - 9 25.91 cM fecundity QTL 4 unknown 105246284 XR_876844 Gm41588 - - 17 C|17 predicted gene, 41588 ncRNA 73240 3110056K14Rik - - X|X RIKEN cDNA 3110056K14 gene protein-coding 102635232 XR_379052 Gm32623 - - 8 B3.2|8 predicted gene, 32623 ncRNA 777648 Ighj1 Gm16878 - 12|12 F1 immunoglobulin heavy joining 1 other 192897 Mm.213873 NM_133663 ENSMUSG00000020758 Itgb4 AA407042|C230078O20|CD104 - 11 E2|11 80.91 cM integrin beta 4 protein-coding 100034957 Apsic4 - - - apomorphine stress induced climbing 4 unknown 234549 Mm.36291 NM_172757 ENSMUSG00000031657 Heatr3 C030036P15Rik - 8|8 C3 HEAT repeat containing 3 protein-coding 102631901 XR_374976 Gm14041 - - 2 F1|2 63.19 cM predicted gene 14041 ncRNA 67745 Mm.483404 NM_183267 ENSMUSG00000055159 4930583K01Rik - - 7|7 F1 RIKEN cDNA 4930583K01 gene ncRNA 102634061 Mm.372720 Gm31739 - - 3|3 predicted gene, 31739 ncRNA 100418284 Gm19117 - - 13|13 B3 upstream binding transcription factor, RNA polymerase I pseudogene pseudo 102633159 XR_380613 Gm31057 - - 10 C1|10 predicted gene, 31057 ncRNA 62980 D16Mit202 - - 16 41.34 cM DNA Segment, Chr 16, Massachusetts Institute of Technology 202 unknown 16906 Mm.4105 NM_010721 ENSMUSG00000024590 Lmnb1 - - 18 D3|18 30.84 cM lamin B1 protein-coding 105246220 XR_876632 Gm41533 - - 17 A2|17 predicted gene, 41533 ncRNA 104113 Act3 Act-3 - - actin related gene 3 protein-coding 102640905 XR_001783591 Gm36859 - - 2 H3|2 predicted gene, 36859 ncRNA 111417 Mtv17 Mtv-15|Mtv-17|Mtv-20 - - mammary tumor virus locus 17 other 105244136 XR_866178 Gm39803 - - 2 B|2 predicted gene, 39803 ncRNA 111447 Mtv11 Mtv-11|Mtv-12|Mtv-7a - - mammary tumor virus locus 11 other 100862020 XM_017318709 Gm21405 - - Y C2|Y predicted gene, 21405 protein-coding 73558 Mm.398307 NR_040728 1700110K17Rik - - 9|9 A5.1 RIKEN cDNA 1700110K17 gene ncRNA 102633841 Gm16017 - - 7 D2|7 45.02 cM predicted gene 16017 pseudo 192163 Mm.308500 NM_138662 ENSMUSG00000102312 Pcdha3 mKIAA0345 - 18|18 B2-B3 protocadherin alpha 3 protein-coding 12936 Mm.308500 NM_007766 ENSMUSG00000104252 Pcdha4 Cnr1|Crnr1|R75250 - 18|18 B2-B3 protocadherin alpha 4 protein-coding 85035 D2Mit4 - - 2 6.9 cM DNA segment, Chr 2, Massachusetts Institute of Technology 4 unknown 102636873 XR_874573 LOC102636873 - - 14 C1 uncharacterized LOC102636873 ncRNA 77319 C030007D22Rik - - 4|4 RIKEN cDNA C030007D22 gene protein-coding 69920 Mm.440028 NM_027259 ENSMUSG00000019738 Polr2i 2810002B19Rik - 7|7 B1 polymerase (RNA) II (DNA directed) polypeptide I protein-coding 77899 6720470G18Rik - - 13|13 RIKEN cDNA 6720470G18 gene protein-coding 192734 Mm.259320 NM_198860 ENSMUSG00000046807 Lrrc75b AI646023|Fam211b - 10|10 C1 leucine rich repeat containing 75B protein-coding 77625 C530007A02Rik - - 4|4 RIKEN cDNA C530007A02 gene protein-coding 105245113 XR_871478 Gm40607 - - 10 A3|10 predicted gene, 40607 ncRNA 665127 Gm7506 EG665127 - 8 A1.1|8 voltage-dependent anion channel 1 pseudogene pseudo 107727 Tcrg-V - - - T cell receptor gamma, variable region other 105242801 Gm38912 - - 11|11 predicted gene, 38912 ncRNA 387510 Mm.386929 NM_199157 ENSMUSG00000042993 Ifnk - - 4|4 A5 interferon kappa protein-coding 100503922 Gm19967 - - 11|11 43.21 cM predicted gene, 19967 ncRNA 111909 Pltr7 - - - polytropic long terminal repeat containing proviral locus 7 other 101056142 Gm29787 - - 13 A5|13 predicted gene, 29787 pseudo 108167596 Gm28341 - - 1 A3|1 60S ribosomal protein L17 pseudogene pseudo 258051 Mm.233576 NM_001011813 ENSMUSG00000091601 Olfr93 MOR256-39P - 17|17 B1 olfactory receptor 93 protein-coding 104371 Acc - - - anterior capsular cataract unknown 70884 Mm.252823 NM_001162979 ENSMUSG00000039391 Ccdc81 4921513D09Rik - 7 D3|7 50.38 cM coiled-coil domain containing 81 protein-coding 232993 Cyp2b28-ps EG232993|Gm10990|Gm4882 - 7 A3|7 cytochrome P450, family 2, subfamily b, polypeptide 28, pseudogene pseudo 108167422 XR_001778112 LOC108167422 - - 7 B3 uncharacterized LOC108167422 ncRNA 114232 Eae21 - - 2 38.54 cM experimental allergic encephalomyelitis susceptibility 21 unknown 13251 Del(1)55H Del55H - - deletion, Chr 1, Harwell 55 other 100416106 Gm17918 - - 7|7 C predicted gene, 17918 pseudo 105244975 XR_870371 Gm40493 Gm45653 - 8 A4|8 predicted gene, 40493 ncRNA 21071 T(11;19)42H T42H - - reciprocal translocation, Chr 11 and 19, Harwell 42 other 110910 Pcca-rs - - - propionyl-Coenzyme A carboxylase, alpha polypeptide, related sequence protein-coding 73041 2900060K15Rik - - 2|2 RIKEN cDNA 2900060K15 gene protein-coding 100416012 Gm17870 - - 10|10 D1 keratin 18 pseudogene pseudo 109389 Twq1 - - 13 7.31 cM testis weight QTL 1 unknown 102635347 XR_001779092 Gm32710 - - 9 A1|9 predicted gene, 32710 ncRNA 53601 Mm.12862 NM_017378 ENSMUSG00000024440 Pcdh12 Pcdh14|VE-cad-2 - 18|18 B3 protocadherin 12 protein-coding 622561 Gm9771 - - 3|3 F2.2 RNA binding motif protein, X chromosome pseudogene pseudo 116825 Amp2 Amp-2 - - amplitude of circadian rhythm 2 unknown 102633022 Gm29320 - - Y|Y predicted gene 29320 ncRNA 100191011 Gm17383 - - 18|18 E3 tubulin, alpha 1B pseudogene pseudo 102638762 XR_001781638 Gm35248 - - 15 B3.1|15 predicted gene, 35248 ncRNA 59053 Mm.133202 NM_021555 ENSMUSG00000022554 Hgh1 Brp16|D15Ertd741e|Fam203a|MNCb-5873 - 15 D3|15 35.78 cM HGH1 homolog protein-coding 102635455 XR_384278 Gm32788 - - 15 E1|15 predicted gene, 32788 ncRNA 105242654 XR_869079 Gm38809 - - 6 B3|6 predicted gene, 38809 ncRNA 105246322 XR_876983 Gm41623 - - 17 E3|17 predicted gene, 41623 ncRNA 98766 Mm.247824 NM_133835 ENSMUSG00000036352 Ubac1 1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1 - 2|2 A3 ubiquitin associated domain containing 1 protein-coding 545551 Mm.440979 NR_033629 BC021767 - - 3|3 F2.1 cingulin pseudogene pseudo 105246197 Gm41529 - - 17|17 predicted gene, 41529 ncRNA 207137 Bbaa16 Bb16 - - B.burgdorferi-associated arthritis 16 unknown 102639344 XR_383485 Gm35678 - - 14 D1|14 predicted gene, 35678 ncRNA 102633337 Gm31186 - - Y|Y predicted gene, 31186 protein-coding 105243307 XR_879262 Gm39267 - - 8 E1|8 predicted gene, 39267 ncRNA 12319 Mm.119320 NM_007592 ENSMUSG00000041261 Car8 AW546993|Ca8|Cals|Cals1|Carp|wdl - 4 A1|4 3.53 cM carbonic anhydrase 8 protein-coding 105243092 XR_870062 Gm39116 - - 7 F5|7 predicted gene, 39116 ncRNA 629549 Gm6979 - - 15|15 F1 predicted gene 6979 pseudo 170729 Mm.218747 NM_130893 ENSMUSG00000048385 Scrt1 - - 15|15 D3 scratch family zinc finger 1 protein-coding 69690 Mm.32643 2310057B04Rik - - 13|13 RIKEN cDNA 2310057B04 gene unknown 108169172 XR_001785387 Gm46978 - - 6 G1|6 predicted gene, 46978 ncRNA 114255 Mm.203949 NM_053246 ENSMUSG00000040631 Dok4 - - 8|8 C5 docking protein 4 protein-coding 100036280 Ceat1 - - 17 8.51 cM chronic experimental autoimmune thyroiditis 1 unknown 102466630 NR_105763 ENSMUSG00000098689 Mir6345 Gm27819|mmu-mir-6345 - 1|1 D microRNA 6345 ncRNA 100043168 Gm14292 - - 2|2 H4 Wilms' tumour 1-associating protein pseudogene pseudo 102635550 Mm.393768 XR_387847 Gm32854 - - 8 C2|8 predicted gene, 32854 ncRNA 102636665 XR_373758 Gm33669 - - 1 H5|1 predicted gene, 33669 ncRNA 102637349 Mm.402869 NR_152790 ENSMUSG00000111049 Gm34184 - - 10 C1|10 predicted gene, 34184 ncRNA 30952 Mm.445778 NM_013927 ENSMUSG00000056494 Cngb3 CCNC2|CNG6|Cngbeta2 - 4|4 A3 cyclic nucleotide gated channel beta 3 protein-coding 15115 Mm.10528 NM_008214 ENSMUSG00000001380 Hars MMHRS - 18|18 B2 histidyl-tRNA synthetase protein-coding 237048 Gm4917 EG237048 - X|X F1 TGF-beta activated kinase 1/MAP3K7 binding protein 2 pseudogene pseudo 73915 Mm.482777 NR_040328 4833419F23Rik - - 18|18 A1 RIKEN cDNA 4833419F23 gene ncRNA 102638962 LOC102638962 - - 2 A3 cytochrome c oxidase subunit 7A2, mitochondrial pseudogene pseudo 246791 Mm.425362 NM_145707 ENSMUSG00000066772 Obox3 Ohx - 7|7 A2 oocyte specific homeobox 3 protein-coding 320573 C130024J02Rik - - 18|18 RIKEN cDNA C130024J02 gene protein-coding 102465655 NR_106048 ENSMUSG00000098582 Mir7080 Gm27911|mmu-mir-7080 - 8|8 E1 microRNA 7080 ncRNA 70861 Mm.18725 NM_027582 ENSMUSG00000025955 Akr1cl 4921521F21Rik|AI451536|AI503553 - 1|1 C2 aldo-keto reductase family 1, member C-like protein-coding 102633978 XR_391011 Gm31672 - - 4 E2|4 predicted gene, 31672 ncRNA 15552 Mm.40573 NM_008309 ENSMUSG00000070687 Htr1d 5-HT-1D|5-HT1D|AI853647|Gpcr14|Htr1db - 4 D3|4 68.74 cM 5-hydroxytryptamine (serotonin) receptor 1D protein-coding 108167759 XR_001779645 Gm46182 - - 10 D2|10 predicted gene, 46182 ncRNA 110175 Mm.294708 NM_026637 ENSMUSG00000002797 Ggct A030007L17Rik|AA673177|Gctg|Ggc - 6 B3|6 27.26 cM gamma-glutamyl cyclotransferase protein-coding 107294 AU022848 - - - expressed sequence AU022848 unknown 22431 Mm.389339 NM_144783 ENSMUSG00000016458 Wt1 D630046I19Rik|Wt-1 - 2 E2-E3|2 55.06 cM Wilms tumor 1 homolog protein-coding 100043914 XM_017319409 ENSMUSG00000078898 Zfp968 Gm4723 - 2 H4|2 zinc finger protein 968 protein-coding 20465 Mm.4775 NM_011377 ENSMUSG00000062713 Sim2 bHLHe15 - 16 C4|16 55.05 cM single-minded family bHLH transcription factor 2 protein-coding 17258 Mm.132788 NM_001033713 ENSMUSG00000030557 Mef2a A430079H05Rik - 7 C|7 36.72 cM myocyte enhancer factor 2A protein-coding 112345 Feml2 - - - femur length in high growth mice 2 unknown 100503428 Mm.332138 NM_001122663 C030017K20Rik Gm1670 - 4|4 E2 RIKEN cDNA C030017K20 gene protein-coding 102634943 XR_001785435 Gm32403 - - 6 B3|6 predicted gene, 32403 ncRNA 258810 Mm.377700 NM_146814 ENSMUSG00000073917 Olfr665 MOR34-7 - 7|7 E3 olfactory receptor 665 protein-coding 102637646 XR_386719 LOC102637646 - - 19 C3 uncharacterized LOC102637646 ncRNA 105243327 XR_879351 Gm39280 - - 8 E2|8 predicted gene, 39280 ncRNA 105242771 XR_869435 Gm38898 - - 6 F3|6 predicted gene, 38898 ncRNA 16253 In(15)2Rl In2Rl - - inversion, Chr 15, Russell 2 other 258049 Olfr755-ps1 MOR121-3P - 17|17 B1 olfactory receptor 755, pseudogene 1 pseudo 102632915 XR_382661 Gm30867 - - 13 C1|13 predicted gene, 30867 ncRNA 233575 Mm.302013 NM_145583 ENSMUSG00000030990 Pgap2 1810006G21Rik|C76649|Frag1 - 7|7 E2 post-GPI attachment to proteins 2 protein-coding 547170 Gm14564 EG547170 - X|X A3.3 predicted gene 14564 protein-coding 102631560 XR_872768 Gm26973 - - 12 C1|12 predicted gene, 26973 ncRNA 328274 Mm.222470 NM_177811 ENSMUSG00000055560 Zfp459 9930025G17Rik|Rslcan-14 - 13 B3|13 34.54 cM zinc finger protein 459 protein-coding 100036252 Heal12 - - - wound healing/regeneration 12 unknown 271209 Mm.300655 NM_146246 ENSMUSG00000046049 Rp1l1 BC031365|BE983540|Dcdc4|Rp1hl1 - 14|14 D1 retinitis pigmentosa 1 homolog like 1 protein-coding 77789 Mm.441638 A930007D18Rik - - 4|4 RIKEN cDNA A930007D18 gene protein-coding 102637681 XR_374938 Gm34430 - - 2 E5|2 predicted gene, 34430 ncRNA 328779 Mm.328848 NM_001012402 ENSMUSG00000039628 Hs3st6 3-OST-6 - 17|17 A3.3 heparan sulfate (glucosamine) 3-O-sulfotransferase 6 protein-coding 257792 Olfr931-ps1 EG257792|GA_x5J8B7W60AJ-666029-666595|Gm5013 - 9 A5.1|9 olfactory receptor 931, pseudogene 1 pseudo 67317 Mm.478018 NM_026088 ENSMUSG00000028451 1700022I11Rik - - 4 A5|4 RIKEN cDNA 1700022I11 gene protein-coding 102634339 XR_376878 Gm31945 - - 5 B3|5 predicted gene, 31945 ncRNA 102466154 NR_105791 ENSMUSG00000099015 Mir6372 Gm27358|mmu-mir-6372 - 11|11 A3.3 microRNA 6372 ncRNA 109280117 LOC109280117 Mm1347 - - VISTA enhancer mm1347 biological-region 108167923 XR_001780299 Gm46293 - - 11 D|11 predicted gene, 46293 ncRNA 108328 Mtv4 Mtv-4 - - mammary tumor virus locus 4 other 16290 In(5)30Rk-d In(5)30Rk|In30Rk - - inversion, Chr 5, Roderick 30, distal other 72383 Mm.34382 NM_028219 ENSMUSG00000063651 Cnfn 2210418J09Rik - 7|7 A3 cornifelin protein-coding 75692 Mm.161167 NM_001025586 ENSMUSG00000071078 Nr2c2ap 2310073E15Rik - 8|8 B3.3 nuclear receptor 2C2-associated protein protein-coding 105247680 LOC105247680 - - - uncharacterized LOC105247680 ncRNA 61440 D6Mit113 - - 6 75.9 cM DNA segment, Chr 6, Massachusetts Institute of Technology 113 unknown 84094 Mm.260768 NM_032398 ENSMUSG00000034845 Plvap MECA32|Pv1 - 8 B3.3|8 34.43 cM plasmalemma vesicle associated protein protein-coding 60887 D7Mit72 - - 7 16.93 cM DNA segment, Chr 7, Massachusetts Institute of Technology 72 unknown 329739 Mm.69013 NM_001163567 ENSMUSG00000040339 Fam102b 1600010D10Rik|B430201A12Rik - 3|3 F3 family with sequence similarity 102, member B protein-coding 112069 Melm3 - - - melanoma modifier 3 unknown 100043490 Gm10355 - - 3|3 F2.2 RAN guanine nucleotide release factor pseudogene pseudo 630461 Trav9-4 Gm13907 - 14 27.47 cM|14 C2 T cell receptor alpha variable 9-4 other 105243671 XR_001782767 Gm39502 - - X A3.3|X predicted gene, 39502 ncRNA 102640756 XR_375215 Gm36748 - - 2 H3|2 predicted gene, 36748 ncRNA 100303729 E130009M23Rik - - 19|19 RIKEN cDNA E130009M23 gene unknown 492969 Hdlq20 - - 1 88.97 cM HDL QTL 20 unknown 320817 Mm.210966 NM_001099628 ENSMUSG00000052812 Atad2b 1110014E10Rik|BC032887|C79189|D530031C13Rik - 12|12 A1.1 ATPase family, AAA domain containing 2B protein-coding 668270 Gm9077 EG668270 - 12|12 A1.1 RNA binding motif protein 16 pseudogene pseudo 62549 D11Mit205 - - 11 19.21 cM DNA segment, Chr 11, Massachusetts Institute of Technology 205 unknown 13216 Mm.425522 NM_010031 Defa1 Defcr|Defcr1 - 8 A2|8 defensin, alpha 1 protein-coding 102640970 XR_876646 Gm36907 - - 17 A3.2|17 predicted gene, 36907 ncRNA 100035129 Wbcq1 - - - white blood cell QTL 1 unknown 102642952 Gm38645 - - 3|3 predicted gene, 38645 ncRNA 100035238 Cfmq1 - - 1 76.73 cM cystic fibrosis modifier QTL 1 unknown 102632153 XR_382654 Gm30303 - - 13 C1|13 predicted gene, 30303 ncRNA 622956 Gm6373 EG622956 - X|X F2 predicted gene 6373 pseudo 108168088 XR_001780975 Gm46419 - - 13 B2|13 predicted gene, 46419 ncRNA 102465169 NR_105751 ENSMUSG00000098437 Mir195b Gm27491|mmu-mir-195b - 2|2 C1.1 microRNA 195b ncRNA 626309 Gm6663 EG626309 - 18|18 B3 mortality factor 4 like 1 pseudogene pseudo 67868 Mm.297477 NM_026419 ENSMUSG00000023433 Cela3b 0910001F22Rik|2310074F01Rik|AI504000|Ela3|Ela3b - 4 D3|4 69.9 cM chymotrypsin-like elastase family, member 3B protein-coding 245386 Mm.72979 NM_172930 ENSMUSG00000036502 Tmem255a 4933417N17|6430550H21Rik|Fam70a - X|X A3.3 transmembrane protein 255A protein-coding 101056120 LOC101056120 - - 12 A1.3 zinc finger protein 120-like pseudo 105246095 Mm.416914 XR_876003 Gm26562 - - 16 B2|16 predicted gene, 26562 ncRNA 102637832 XR_375322 Gm34542 - - 2 H3|2 predicted gene, 34542 ncRNA 319885 Mm.331576 NM_138590 ENSMUSG00000035649 Zcchc7 4930572I07Rik|D4Wsu132e - 4 B1|4 23.57 cM zinc finger, CCHC domain containing 7 protein-coding 791074 NR_030429 ENSMUSG00000076457 Mir802 Mirn802|mir-802|mmu-mir-802 - 16 C4|16 microRNA 802 ncRNA 78891 Mm.276063 NM_023912 ENSMUSG00000024941 Scyl1 2810011O19Rik|C85140|Ntkl|mdf|mfd|p105 - 19 A|19 4.34 cM SCY1-like 1 (S. cerevisiae) protein-coding 100040938 Gm3052 - - 1 B|1 predicted gene 3052 unknown 257908 Mm.482845 NM_001011753 ENSMUSG00000092413 Olfr115 MOR218-11P - 17|17 B1 olfactory receptor 115 protein-coding 102636900 LOC102636900 - - 12 C3 cytochrome c oxidase subunit 7A2, mitochondrial pseudogene pseudo 100035620 Cmv3 - - 6 63.1 cM cytomegalovirus resistance 3 unknown 102640228 Gm28978 - - Y|Y predicted gene 28978 ncRNA 224897 Mm.205535 NM_172624 ENSMUSG00000001229 Dpp9 6430584G11Rik|A330078I11|DPP IX|DPRP2 - 17|17 D dipeptidylpeptidase 9 protein-coding 100040400 Gm20840 - - Y|Y predicted gene, 20840 protein-coding 52940 B.seq - - - DNA segment, B unknown 60816 D4Mit54 - - 4 70.02 cM DNA segment, Chr 4, Massachusetts Institute of Technology 54 unknown 100034802 Obq16 - - 8 44.99 cM obesity QTL 16 unknown 100038431 Mm.363054 Gm10568 - - - predicted gene 10568 unknown 114640 Mm.207078 NM_053256 ENSMUSG00000038300 Pth2 Tifp39|Tip39 - 7|7 B3 parathyroid hormone 2 protein-coding 102640913 XR_882054 ENSMUSG00000108622 Gm36864 - - 7 B3|7 predicted gene, 36864 protein-coding 723863 NR_029914 ENSMUSG00000065497 Mir410 Mirn410|mmu-mir-410 - 12 F1|12 microRNA 410 ncRNA 100628605 NR_039598 ENSMUSG00000093314 Mir5136 mmu-mir-5136|mu-mir-5136 - 19 A|19 5.93 cM microRNA 5136 ncRNA 20455 Sif1 - - - serum induced transcript 1 protein-coding 102634189 XR_001780864 Gm31832 - - 13 A2|13 predicted gene, 31832 ncRNA 105246169 Gm41503 - - 16|16 predicted gene, 41503 protein-coding 20534 Mm.352407 NM_009206 ENSMUSG00000029141 Slc4a1ap kanadaptin - 5|5 B1 solute carrier family 4 (anion exchanger), member 1, adaptor protein protein-coding 108582 Iap3rb7 - - - intracisternal A-type particle, U3 region, SINE repeat b-7 other 242584 Mm.374877 NM_146254 ENSMUSG00000035126 Wdr78 BC028975 - 4|4 C6 WD repeat domain 78 protein-coding 109304 XR_882296 B230118I11Rik - - X|X A4 RIKEN cDNA B230118I11 gene ncRNA 546368 XM_006528440 Gm5945 EG546368 - X|X E3 predicted gene 5945 protein-coding 666233 XM_017316254 ENSMUSG00000094157 Gm7995 100041950|Gm3586 - 14 B|14 predicted gene 7995 protein-coding 61722 D5Mit287 - - 5 89.18 cM DNA segment, Chr 5, Massachusetts Institute of Technology 287 unknown 359887 DXMgc28 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 28 unknown 100042871 Gm4083 - - 7|7 F2 predicted gene 4083 pseudo 108168873 XR_001783856 Gm46806 - - 3 D|3 predicted gene, 46806 ncRNA 69077 Mm.260539 NM_178616 ENSMUSG00000017428 Psmd11 1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9 - 11|11 B5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 protein-coding 62591 D13Mit108 - - 13 49.22 cM DNA segment, Chr 13, Massachusetts Institute of Technology 108 unknown 99501 AA516838 - - - expressed sequence AA516838 protein-coding 102465191 NR_105788 ENSMUSG00000098258 Mir6369 Gm27615|mmu-mir-6369 - 13|13 B1 microRNA 6369 ncRNA 668379 Mm.380094 NM_001281508 ENSMUSG00000097982 Scgb2b12 Abpbg12|EG668379|Gm9138 - 7|7 B1 secretoglobin, family 2B, member 12 protein-coding 17188 Mm.378964 NM_010772 ENSMUSG00000030678 Maz MAZI|PUR1|Pur-1|SAF-1|SAF-2 - 7|7 F3 MYC-associated zinc finger protein (purine-binding transcription factor) protein-coding 105242976 XR_001778346 Gm39037 - - 7 D1|7 predicted gene, 39037 ncRNA 243655 Mm.30968 NM_153590 ENSMUSG00000050241 Klre1 Klre-1|NKG2I - 6|6 F3 killer cell lectin-like receptor family E member 1 protein-coding 100503643 Gm19811 - - 15|15 34.0 cM cytochrome b-c1 complex subunit 6, mitochondrial-like pseudo 105243345 XR_870549 Gm39293 - - 9 A2|9 predicted gene, 39293 ncRNA 105243367 XR_870600 Gm39313 - - 9 A4|9 predicted gene, 39313 ncRNA 237030 Mm.472680 XM_003085289 Gm4916 EG237030|Rbm31x - X|X E3 predicted gene 4916 protein-coding 100417887 Gm18882 - - 13|13 B3 RAB geranylgeranyl transferase, b subunit pseudogene pseudo 100861851 NR_102375 Gm21269 - - 7 D1|7 predicted gene, 21269 ncRNA 493583 Mm.247426 NM_001007552 Itlnb Itln1b|Itln2 - 1|1 H3 intelectin b protein-coding 100040703 Gm13297 - - 2|2 A1 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 100417270 Gm14020 - - 2|2 E5 ribosomal protein S4, X-linked pseudogene pseudo 218921 Mm.212464 NM_175008 ENSMUSG00000096405 4930474N05Rik - - 14|14 B RIKEN cDNA 4930474N05 gene protein-coding 433354 Mm.207930 LOC433354 - - 1|1 E4 uncharacterized LOC433354 unknown 100035684 Hemq2 - - 2 89.27 cM hematocrit QTL 2 unknown 258346 Mm.377445 NM_146349 ENSMUSG00000075156 Olfr1128 MOR176-3 - 2|2 D olfactory receptor 1128 protein-coding 208158 Mm.326383 NM_198599 ENSMUSG00000041205 Map6d1 A330066I15Rik - 16|16 A3 MAP6 domain containing 1 protein-coding 677008 Mm.2299 LOC677008 - - 1|1 natural killer cell receptor 2B4-like protein-coding 105243545 XR_871304 Gm39436 - - 9 F3|9 predicted gene, 39436 ncRNA 66848 Mm.26625 NM_025799 ENSMUSG00000019810 Fuca2 0610025O11Rik|5530401P20Rik - 10|10 A2 fucosidase, alpha-L- 2, plasma protein-coding 105244665 Gm12826 - - 4|4 53.46 cM predicted gene 12826 ncRNA 77375 9430085L16Rik - - 14|14 RIKEN cDNA 9430085L16 gene protein-coding 108167534 XR_001778578 LOC108167534 - - 8 B3.3 uncharacterized LOC108167534 ncRNA 100038364 Mm.395039 Gm10836 - - - predicted gene 10836 unknown 100504101 Mm.235026 NR_045049 ENSMUSG00000113429 Gm20063 - - 12 C1|12 26.43 cM predicted gene, 20063 ncRNA 77753 Mm.54202 XR_001780841 A230103O09Rik - - 13|13 A3.3 RIKEN cDNA A230103O09 gene unknown 545475 Mm.389378 NM_001037502 ENSMUSG00000074679 Defb28 Gm1635 - 2 G3|2 defensin beta 28 protein-coding 62018 D4Mit338 - - 4 58.58 cM DNA segment, Chr 4, Massachusetts Institute of Technology 338 unknown 105246219 XR_876630 Gm41532 - - 17 A2|17 predicted gene, 41532 ncRNA 225266 Mm.436836 NM_001081403 ENSMUSG00000042514 Klhl14 6330403N15Rik|AI785250|printor - 18|18 A2 kelch-like 14 protein-coding 105245434 XR_872828 Gm40890 - - 12 C3|12 predicted gene, 40890 ncRNA 102632276 XR_378922 Gm30397 - - 8 B1.1|8 predicted gene, 30397 ncRNA 102636850 XR_386132 Gm33805 - - 18 A2|18 predicted gene, 33805 ncRNA 27682 D11Moh19 - - - DNA segment, Chr 11, KL Mohlke 19 unknown 100038713 Mm.470751 NR_045741 ENSMUSG00000113679 Gm10432 - - 12 E|12 predicted gene 10432 ncRNA 100312541 Vmn1r-ps112 Gm11311 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 112 pseudo 72121 Mm.14816 NM_028110 ENSMUSG00000027901 Dennd2d 2010308M01Rik|AI451421 - 3|3 F2.3 DENN/MADD domain containing 2D protein-coding 75774 4930403L11Rik - - 10|10 RIKEN cDNA 4930403L11 gene protein-coding 102635889 Gm33112 - - Y|Y predicted gene, 33112 pseudo 228911 Mm.315789 NM_080455 ENSMUSG00000047907 Tshz2 2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2 - 2 H3|2 89.47 cM teashirt zinc finger family member 2 protein-coding 104022 Ie - - - eye-ear reduction unknown 105244996 Gm40511 - - 9|9 predicted gene, 40511 ncRNA 208285 Mm.311422 NM_001101445 ENSMUSG00000091586 Cyp4f17 EG208285 - 17|17 B1 cytochrome P450, family 4, subfamily f, polypeptide 17 protein-coding 21141 T(2C1-2;4D)41Dn T(2;4)41Dn|T41Dn - - reciprocal translocation, Chr 2, cytogenetic band C1-2; and Chr 4, cytogenetic band D, Davisson 41 other 61697 D6Mit224 - - 6 22.63 cM DNA segment, Chr 6, Massachusetts Institute of Technology 224 unknown 100417220 Gm18459 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 109279929 LOC109279929 Mm241 - - VISTA enhancer mm241 biological-region 15244 Hhex-rs3 - - - hematopoietically expressed homeobox, related sequence 3 protein-coding 57319 Mm.2379 NM_020561 ENSMUSG00000019872 Smpdl3a 0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A - 10|10 B4 sphingomyelin phosphodiesterase, acid-like 3A protein-coding 320225 Mm.349382 NM_001039721 ENSMUSG00000049676 Catsperg1 A230107C01Rik|Catsperg - 7|7 B1 cation channel sperm associated auxiliary subunit gamma 1 protein-coding 102639626 XR_375614 Gm35891 - - 3 C|3 predicted gene, 35891 ncRNA 74445 Mm.290183 4933412A08Rik - - 19|19 D3 RIKEN cDNA 4933412A08 gene protein-coding 105242554 XR_868665 Gm38733 - - 5 G2|5 predicted gene, 38733 ncRNA 60984 D18Mit4 - - 18 57.53 cM DNA segment, Chr 18, Massachusetts Institute of Technology 4 unknown 100503811 Gm19908 - - 6 D1|6 43.07 cM predicted gene, 19908 pseudo 102467242 n-TAtgc7 n-Ta36 - X F1|X nuclear encoded tRNA alanine 7 (anticodon TGC) tRNA 433456 Mm.235231 NM_001002794 ENSMUSG00000075027 4631405J19Rik - - 2|2 E1 RIKEN cDNA 4631405J19 gene ncRNA 665582 Vmn2r-ps46 EG665582|Gm7699 - 7 A1|7 vomeronasal 2, receptor, pseudogene 46 pseudo 69274 Mm.439928 NM_133710 ENSMUSG00000047409 Ctdspl 2810418J22Rik|AI426263|HYA22|SCP3 - 9|9 F3 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like protein-coding 116607 D7Tem9 - - - DNA segment, Chr 7, Tempel 9 unknown 114075 Axtofa7 - - - anxiety-open field activity 7 unknown 621322 XM_017318665 Pramel EG621322 - X|X F1 preferentially expressed antigen in melanoma-like protein-coding 777680 Ighd6-1 Gm17620 - 12|12 F1 immunoglobulin heavy diversity 6-1 pseudo 73350 Mm.6660 1700045I11Rik - - 4|4 A5 RIKEN cDNA 1700045I11 gene unknown 61459 D6Mit186 - - 6 32.4 cM DNA segment, Chr 6, Massachusetts Institute of Technology 186 unknown 102637159 XR_380636 Gm34043 - - 10 C1|10 predicted gene, 34043 ncRNA 56390 Mm.455818 NM_020491 ENSMUSG00000079478 Sssca1 1500016H19Rik|C184L - 19|19 A Sjogren syndrome/scleroderma autoantigen 1 protein-coding 28132 D9Mgc42e ET3 - - DNA segment, Chr 9, MRC UK Mouse Genome Centre 42 expressed unknown 75384 Mm.445955 NR_040740 ENSMUSG00000084995 Lyzl4os 4930589B17Rik|4930596M17Rik - 9|9 F4 lysozyme-like 4, opposite strand ncRNA 100035855 Lgq1 - - - late growth QTL 1 unknown 106200 Mm.291015 NM_029582 ENSMUSG00000022498 Txndc11 2810408E11Rik|AI427833|EFP1|Txdc11 - 16|16 A1 thioredoxin domain containing 11 protein-coding 57320 Mm.277349 NM_020569 ENSMUSG00000028964 Park7 DJ-1|Dj1 - 4|4 E2 Parkinson disease (autosomal recessive, early onset) 7 protein-coding 105243888 XR_872316 Gm12061 - - 11 A3.2|11 14.38 cM predicted gene 12061 ncRNA 665362 Gm12791 - - 4|4 C6 growth factor receptor bound protein 2 pseudogene pseudo 112305 Tlsr6 - - 12 59.46 cM thymic lymphoma suppressor region 6 unknown 19549 Rb(4.15)1Rk Rb1Rk - - Robertsonian translocation, Chr 4 and 15, Roderick 1 other 17544 Ms10f MMS10-F - - minisatellite 10f detected by probe MMS10 other 105163 Mm.440108 AI429388 - - - expressed sequence AI429388 unknown 109280150 LOC109280150 Mm1359 - - VISTA enhancer mm1359 biological-region 21787 Mm.425970 NM_019678 ENSMUSG00000022757 Tfg AI173908 - 16|16 C1.1 Trk-fused gene protein-coding 74694 Mm.233833 NM_029057 ENSMUSG00000052302 Tbc1d30 4930505D03Rik|9530013E20Rik - 10|10 D2 TBC1 domain family, member 30 protein-coding 73781 4930432H08Rik - - 5|5 RIKEN cDNA 4930432H08 gene protein-coding 100039338 Gm11779 - - 4|4 A1 predicted gene 11779 pseudo 102640271 Gm36382 - - 14 C2|14 predicted gene, 36382 pseudo 667369 Gm8595 EG667369 - X|X F3 predicted gene 8595 pseudo 108169087 Gm46930 - - 5 E5|5 predicted gene, 46930 pseudo 14632 Mm.391450 NM_010296 ENSMUSG00000025407 Gli1 AV235269|Zfp-5|Zfp5 - 10 D3|10 74.5 cM GLI-Kruppel family member GLI1 protein-coding 320797 Mm.452170 F830005D05Rik - - 1|1 RIKEN cDNA F830005D05 gene protein-coding 102633008 XR_390438 Gm38450 - - 4 A3|4 predicted gene, 38450 ncRNA 102637930 XR_390040 Gm34619 - - 11|11 predicted gene, 34619 ncRNA 102635376 XR_384402 Gm32733 - - 15 F1|15 predicted gene, 32733 ncRNA 75416 Mm.40292 NM_029278 ENSMUSG00000036693 Nop14 2610033H07Rik|Nol14 - 5|5 B2 NOP14 nucleolar protein protein-coding 104349 Mm.460659 NM_144546 ENSMUSG00000057835 Zfp119a AL024077|Mzf13|Zfp119 - 17|17 D zinc finger protein 119a protein-coding 668740 Mettl4-ps1 - - 17|17 E1.3 methyltransferase like 4, pseudogene 1 pseudo 100040140 Gm12411 - - 4|4 B1 predicted gene 12411 pseudo 11495 Mm.422850 NM_009618 ENSMUSG00000022039 Adam2 AI323749|Ftnb|Ph30-beta - 14 D1|14 34.36 cM a disintegrin and metallopeptidase domain 2 protein-coding 111497 Xmmv73 Xmmv-73 - - xenotropic-MCF leukemia virus 73 other 218461 Mm.100167 NM_172263 ENSMUSG00000021684 Pde8b B230331L10Rik|C030047E14Rik - 13|13 D1 phosphodiesterase 8B protein-coding 624979 Gm6542 EG624979 - 18|18 B2 proteasome (prosome, macropain) subunit, alpha type 4 pseudogene pseudo 111579 Xmv62 Xmv-62 - - xenotropic murine leukemia virus 62 other 69520 Mm.439968 NM_001018079 ENSMUSG00000068885 Lce3f 2310002A05Rik - 3|3 F1 late cornified envelope 3F protein-coding 109390 Cbm3 Cbs14a - - cerebellum weight 3 unknown 279185 Mm.441604 NM_001126324 ENSMUSG00000066688 Gm13083 - - 4|4 E1 predicted gene 13083 protein-coding 93926 D16Jhu65 553H14.T7 - - DNA segment, Chr 16, Johns Hopkins University 65 unknown 93945 D16Jhu31e 186P4.T7 - - DNA segment, Chr 16, Johns Hopkins University 31, expressed protein-coding 100418349 Gm19154 - - 13|13 A2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 pseudogene pseudo 100273 Mm.366315 NM_133885 ENSMUSG00000028559 Osbpl9 2600011I06Rik|AU015843|Orp-9 - 4|4 C7 oxysterol binding protein-like 9 protein-coding 102639892 Gm36096 - - 12 A1.1|12 transmembrane O-methyltransferase pseudogene pseudo 70450 Mm.259460 NM_001009573 ENSMUSG00000057948 Unc13d 2610108D09Rik|Jinx|Munc13-4|mFLJ00067 - 11|11 E2 unc-13 homolog D (C. elegans) protein-coding 75564 Mm.17993 NM_029338 ENSMUSG00000023966 Rsph9 1700027N10Rik - 17|17 C radial spoke head 9 homolog (Chlamydomonas) protein-coding 72661 Mm.320384 NM_001160326 ENSMUSG00000052584 Serp2 2810032E02Rik - 14|14 D3 stress-associated endoplasmic reticulum protein family member 2 protein-coding 100042714 Obox4-ps15 Gm3984 - 7 A1|7 oocyte specific homeobox 4, pseudogene 15 pseudo 257997 Olfr737-ps1 MOR0-11P - 14|14 C1 olfactory receptor 737, pseudogene 1 pseudo 105244877 XR_869501 Gm40407 - - 6 G1|6 predicted gene, 40407 ncRNA 100036750 Sle19 - - - systematic lupus erythematosus susceptibility 19 unknown 105246128 Gm41468 - - 16|16 predicted gene, 41468 protein-coding 70767 Mm.279872 NM_027541 ENSMUSG00000015748 Prpf3 3632413F13Rik - 3|3 F2.1 pre-mRNA processing factor 3 protein-coding 18214 Mm.229249 NM_022563 ENSMUSG00000026674 Ddr2 AW495251|Ntrkr3|tyro10 - 1 H3|1 76.84 cM discoidin domain receptor family, member 2 protein-coding 22757 Mm.332842 NM_016683 ENSMUSG00000055991 Zkscan5 AI132486|AI326970|Zfp95|hKraba1 - 5|5 G2 zinc finger with KRAB and SCAN domains 5 protein-coding 105245025 XR_870979 Gm26567 - - 9 E3.1|9 predicted gene, 26567 ncRNA 101055841 Tmem167-ps1 Gm28601 - 7 A1|7 transmembrane protein 167, pseudogene 1 pseudo 105247282 XM_011251036 ENSMUSG00000101928 LOC105247282 - - Y A1 X-linked lymphocyte-regulated protein PM1-like protein-coding 100526525 NR_037275 ENSMUSG00000092695 Mir3092 mir-3092|mmu-mir-3092 - 3 A3|3 10.98 cM microRNA 3092 ncRNA 66328 Mm.45377 NM_025490 ENSMUSG00000027431 Scp2d1 1700010M22Rik - 2|2 G1 SCP2 sterol-binding domain containing 1 protein-coding 108167685 XR_001779307 Gm46132 - - 9 F1|9 predicted gene, 46132 ncRNA 105244933 XR_869914 Gm40455 - - 7 F2|7 predicted gene, 40455 ncRNA 634834 XR_390709 Gm11821 - - 4|4 A1 predicted gene 11821 unknown 108493 Ms90 MMS90 - - minisatellites detected by probe MMS90 other 493035 Pgia29 - - 14 45.31 cM proteoglycan induced arthritis 29 unknown 100036391 Bmd26 - - - bone mineral density 26 unknown 665883 Gm7837 EG665883 - 1|1 D predicted gene 7837 pseudo 111434 Emv28 Emv-28 - - endogenous ecotropic MuLV 28 other 105244030 XR_865789 Gm39716 - - 1 H4|1 predicted gene, 39716 ncRNA 27357 Mm.6375 NM_013755 ENSMUSG00000019528 Gyg AU017667|GN1|Gyg1 - 3 A2|3 6.19 cM glycogenin protein-coding 109280131 LOC109280131 Mm1406 - - VISTA enhancer mm1406 biological-region 108168497 LOC108168497 - - X A3.3 proline-rich extensin-like protein EPR1 pseudo 102634322 Gm31931 - - 10 B4|10 predicted gene, 31931 pseudo 667299 Gm16531 - - 10|10 A3 UL16 binding protein 1 pseudogene pseudo 382106 Mm.441401 NM_001013776 ENSMUSG00000062275 Fbxw24 EG382106|Gm5162 - 9 F2|9 F-box and WD-40 domain protein 24 protein-coding 60942 DXMit38 - - X 57.4 cM DNA segment, Chr X, Massachusetts Institute of Technology 38 unknown 102639326 XR_380584 Gm35664 - - 10 C1|10 predicted gene, 35664 ncRNA 22589 Mm.10141 NM_009530 ENSMUSG00000031229 Atrx 4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX - X D|X 47.26 cM ATRX, chromatin remodeler protein-coding 100042681 Gm3962 100042790|Gm4033 - 7 A1|7 vomeronasal 2, receptor 31 pseudogene pseudo 18968 Mm.1923 NM_008892 ENSMUSG00000006678 Pola1 AW321876|Pola - X C3|X 41.06 cM polymerase (DNA directed), alpha 1 protein-coding 66383 Mm.29497 NM_025526 ENSMUSG00000025825 Iscu 2310020H20Rik|AA407971|Nifu|Nifun - 5|5 F iron-sulfur cluster assembly enzyme protein-coding 102633900 XR_385902 Gm31615 - - 17 E4|17 predicted gene, 31615 ncRNA 52471 D13Ertd37e - - 13 53.23 cM DNA segment, Chr 13, ERATO Doi 37, expressed unknown 68409 Mm.486890 0710007G10Rik - - 5|5 RIKEN cDNA 0710007G10 gene protein-coding 383075 Mm.297626 NM_001163189 ENSMUSG00000050439 Enthd1 Gm1242|Gm86 - 15|15 E1 ENTH domain containing 1 protein-coding 15582 hy2 hy-2 - - hydrocephalus 2 unknown 20663 Mm.3770 NM_001135559 ENSMUSG00000034801 Sos2 SOS-2|mSOS-2 - 12 C2|12 28.93 cM SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 108167697 LOC108167697 - - 9 F2 tropomyosin beta chain pseudogene pseudo 107557 Scfr2 - - - stem cell frequency regulator 2 protein-coding 75528 Mm.440342 NM_029326 ENSMUSG00000031512 Tex29 1700018L24Rik - 8|8 A1.1 testis expressed 29 protein-coding 69621 Mm.489856 2310031A07Rik AV087459 - 11|11 B1.2 RIKEN cDNA 2310031A07 gene unknown 100503266 Gm19620 - - 5 E4|5 48.49 cM predicted gene, 19620 pseudo 100036543 Mm.436827 Gm9983 - - - predicted gene 9983 protein-coding 666152 Gm7951 EG666152 - 14|14 B predicted gene 7951 protein-coding 664620 NM_001039662 4933427I04Rik - - - Riken cDNA 4933427I04 gene unknown 60507 Mm.436579 NM_021888 ENSMUSG00000002825 Qtrt1 2610028E17Rik|Tgt - 9|9 A3 queuine tRNA-ribosyltransferase catalytic subunit 1 protein-coding 27277 Mm.273370 NM_013747 ENSMUSG00000021192 Golga5 Ret-II - 12|12 E golgi autoantigen, golgin subfamily a, 5 protein-coding 210321 Mm.99511 NM_183143 ENSMUSG00000061877 BC048679 - - 7|7 D3 cDNA sequence BC048679 protein-coding 18321 Mm.246529 NM_010970 ENSMUSG00000069816 Olfr23 MOR135-27|MTPCR50 - 11|11 B4 olfactory receptor 23 protein-coding 74164 Mm.247456 NM_023739 ENSMUSG00000028423 Nfx1 1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42 - 4 A5|4 20.72 cM nuclear transcription factor, X-box binding 1 protein-coding 113871 Vmn1r-ps27 V1r-ps3 - 6|6 D1 vomeronasal 1 receptor, pseudogene 27 pseudo 75573 Mm.159539 NM_029345 ENSMUSG00000009210 Prr29 2310007L24Rik - 11|11 E1 proline rich 29 protein-coding 70247 Mm.280013 NM_027357 ENSMUSG00000026229 Psmd1 2410026J11Rik|P112|S1 - 1|1 C5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 protein-coding 100504312 Mm.384036 NR_155271 ENSMUSG00000097613 Gm17597 - - 15 E1|15 38.25 cM predicted gene, 17597 ncRNA 102638393 Gm34970 - - 17|17 predicted gene, 34970 ncRNA 61667 D7Mit227 - - 7 22.44 cM DNA segment, Chr 7, Massachusetts Institute of Technology 227 unknown 100503433 Mm.424019 XM_003084455 Gm15433 - - 1 C5|1 43.44 cM predicted pseudogene 15433 protein-coding 105246782 Mm.396151 XR_878747 Gm42020 - - 5 F|5 predicted gene, 42020 ncRNA 215929 Mm.55513 NM_144821 ENSMUSG00000038522 Mfsd4b1 AI317395|AI482555|Naglt1a - 10|10 B1 major facilitator superfamily domain containing 4B1 protein-coding 13036 Mm.2277 NM_007801 ENSMUSG00000032359 Ctsh AL022844 - 9 E3.1|9 47.4 cM cathepsin H protein-coding 111694 Iapt1 - - - intracisternal A particle, tumor specific 1 other 171217 Pcpila2 - - - PCP induced locomotor activity 2 unknown 76757 Mm.338508 NM_029726 ENSMUSG00000019787 Trdn 2310045H21Rik|EG432451|TDN - 10|10 A4 triadin protein-coding 108454 Pmv69 Pmv-69 - - polytropic murine leukemia virus 69 other 102632346 Mm.335174 XR_373384 Gm29040 - - 1 C1.1|1 predicted gene 29040 ncRNA 100101413 Pbwg1.8 - - - postnatal body weight growth 1.8 unknown 75704 Mm.480920 XM_006531545 ENSMUSG00000074156 Ces1h 2310039D24Rik - 8|8 C5 carboxylesterase 1H protein-coding 554327 Mm.460196 NM_001309398 ENSMUSG00000079388 2610042L04Rik Tksn|takusan - 14|14 A1 RIKEN cDNA 2610042L04 gene protein-coding 105244427 XR_879962 Gm40036 - - 11 B3|11 predicted gene, 40036 ncRNA 104681 Mm.265874 NM_134038 ENSMUSG00000041920 Slc16a6 AW743111|ESTM12|MCT 6|MCT 7|MCT6 - 11|11 E1 solute carrier family 16 (monocarboxylic acid transporters), member 6 protein-coding 109245081 LOC109245081 - - - Fgf15 upstream enhancer biological-region 102465707 NR_106086 ENSMUSG00000104566 Mir7227 mmu-mir-7227 - 4|4 D2.3 microRNA 7227 ncRNA 102467505 n-TCgca45 n-Tc45 - 6 B2.3|6 nuclear encoded tRNA cysteine 45 (anticodon GCA) tRNA 75639 1700018H16Rik - - 11|11 C RIKEN cDNA 1700018H16 gene protein-coding 100036494 Htas7 - - - hypothermia due to alcohol sensitivity 7 unknown 29806 Mm.10987 NM_013860 ENSMUSG00000025239 Limd1 AW822033|D9Ertd192e - 9 F4|9 74.0 cM LIM domains containing 1 protein-coding 105244605 XR_879994 Gm40194 - - 11 B4|11 predicted gene, 40194 ncRNA 215160 Mm.295438 NM_031398 ENSMUSG00000039917 Rhbdd2 0610011L13Rik|AI480532|Rhbdl7|Usmg1 - 5|5 G2 rhomboid domain containing 2 protein-coding 780929 Ighv1-50 Gm16829 - 12|12 F2 immunoglobulin heavy variable 1-50 other 100046535 LOC100046535 - - - TRAV13-1-like protein-coding 259040 Mm.377804 NM_147038 ENSMUSG00000067064 Olfr1416 MOR103-3 - 1|1 D olfactory receptor 1416 protein-coding 100035388 Azdm2 - - - Alzheimer's disease modifier 2 unknown 100504179 Gm11930 - - 4 A5|4 14.72 cM cytochrome c oxidase subunit 7C, mitochondrial-like pseudo 171532 AF180010 375-21-89b - - DNA sequence AF180010 unknown 227331 Mm.23065 NM_146112 ENSMUSG00000048000 Gigyf2 2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642 - 1|1 C5-D GRB10 interacting GYF protein 2 protein-coding 61112 D2Mit485 - - 2 60.69 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 485 unknown 665451 Gm12716 - - 4|4 C6 NADH dehydrogenase (ubiquinone) Fe-S protein 2 pseudogene pseudo 61639 D8Mit232 - - 8 32.3 cM DNA segment, Chr 8, Massachusetts Institute of Technology 232 unknown 75488 Mm.395491 1700012O15Rik - - 2|2 F1 RIKEN cDNA 1700012O15 gene protein-coding 74972 Mm.403634 XR_385855 4930500A05Rik - - 17|17 E4 RIKEN cDNA 4930500A05 gene ncRNA 320642 Mm.398806 NR_030698 A630066F11Rik - - 10|10 A1 RIKEN cDNA A630066F11 gene ncRNA 13385 Mm.27256 NM_007864 ENSMUSG00000020886 Dlg4 Dlgh4|PSD-95|PSD95|SAP90|SAP90A - 11|11 B3 discs large MAGUK scaffold protein 4 protein-coding 108168472 LOC108168472 - - X A7.3 60S ribosomal protein L36 pseudogene pseudo 13803 Mm.241073 NM_007930 ENSMUSG00000041773 Enc1 Nrpb|PIG10 - 13|13 D1 ectodermal-neural cortex 1 protein-coding 72472 Mm.186778 NM_028247 ENSMUSG00000019838 Slc16a10 2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1 - 10|10 B1 solute carrier family 16 (monocarboxylic acid transporters), member 10 protein-coding 665620 Gm20776 - - Y|Y predicted gene, 20776 pseudo 71884 Mm.328268 NM_027979 ENSMUSG00000026450 Chit1 2300002L19Rik - 1|1 E4 chitinase 1 (chitotriosidase) protein-coding 73072 Mm.477379 NM_207203 ENSMUSG00000064125 Prr36 - - 8|8 A1.1 proline rich 36 protein-coding 62584 D12Mit177a D12Mit177 - 12 38.49 cM DNA segment, Chr 12, Massachusetts Institute of Technology 177a protein-coding 61251 D2Mit124 - - 2 37.06 cM DNA segment, Chr 2, Massachusetts Institute of Technology 124 unknown 30943 Mm.142568 NM_013921 ENSMUSG00000024124 Prss30 2010015P21Rik|Disp|Disp1|Tmprss8 - 17 12.17 cM|17 A3.3 protease, serine 30 protein-coding 100043016 Mm.484991 NM_001166839 ENSMUSG00000093941 Vmn1r131 Gm4172 - 7 A3|7 vomeronasal 1 receptor 131 protein-coding 668960 NM_001085552 ENSMUSG00000095716 Btbd35f10 Gm14351 - X|X A1.1 BTB domain containing 35, family member 10 protein-coding 22021 Mm.332720 NM_013837 ENSMUSG00000034118 Tpst1 R75054|Tango13a - 5|5 G1.3 protein-tyrosine sulfotransferase 1 protein-coding 723855 NR_029877 ENSMUSG00000105178 Mir376a Mirn376a|mir-376a - 12 F1|12 microRNA 376a ncRNA 105245248 XR_871912 Gm40727 - - 10 C1|10 predicted gene, 40727 ncRNA 19860 NR_004416 ENSMUSG00000104856 Rnu3b3 Rnu3b-3 - 11|11 C U3B small nuclear RNA 3 snRNA 13272 Del(14)14H Del14H - - deletion, Chr 14, Harwell 14 other 105246561 XR_877817 Gm41835 - - 19 C1|19 predicted gene, 41835 ncRNA 56846 Mm.143748 NM_021546 ENSMUSG00000027489 Necab3 2900010M17Rik|AI853434|Apba2bp|Nip1|XB51 - 2|2 H1 N-terminal EF-hand calcium binding protein 3 protein-coding 20278 Mm.35247 NM_011326 ENSMUSG00000000216 Scnn1g SCNEG - 7 F2|7 65.07 cM sodium channel, nonvoltage-gated 1 gamma protein-coding 108347 Emv5 Emv-5 - - endogenous ecotropic MuLV 5 other 57028 Mm.263169 NM_020271 ENSMUSG00000116165 Pdxp 1600027H05Rik|AB041662|PLPP - 15|15 E1 pyridoxal (pyridoxine, vitamin B6) phosphatase protein-coding 102632604 XR_373386 Gm30634 - - 1 C1.1|1 predicted gene, 30634 ncRNA 207214 Mm.28811 NM_001024526 ENSMUSG00000023025 Larp4 DXErtd793|DXErtd793e - 15|15 F1 La ribonucleoprotein domain family, member 4 protein-coding 74114 Mm.28197 NM_023733 ENSMUSG00000003623 Crot 1200003H03Rik - 5|5 A1 carnitine O-octanoyltransferase protein-coding 78446 Mm.244082 NR_046196 ENSMUSG00000113082 D730050B12Rik - - 13|13 C1 RIKEN cDNA D730050B12 gene ncRNA 60695 D6Mit9 - - 6 37.96 cM DNA segment, Chr 6, Massachusetts Institute of Technology 9 unknown 110120464 LOC110120464 - - - VISTA enhancer mm1165 biological-region 665443 LOC665443 EG665443 - 8|8 B3.1 RNA binding motif protein 7 pseudogene pseudo 268449 Mm.22723 NM_207523 ENSMUSG00000058546 Rpl23a BC029892|MDA20 - 11|11 B5 ribosomal protein L23A protein-coding 69538 Mm.232525 NM_054041 ENSMUSG00000033420 Antxr1 2310008J16Rik|2810405N18Rik|Antrx1|Tem8 - 6|6 D1 anthrax toxin receptor 1 protein-coding 100124440 NR_030561 ENSMUSG00000096504 Mir465b-2 Mirn465b-2 - X A7.1|X microRNA 465b-2 ncRNA 432589 Mm.342314 NM_001007584 ENSMUSG00000056008 Gm11541 - - 11 D|11 predicted gene 11541 protein-coding 100312555 Vmn1r-ps126 Gm11327 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 126 pseudo 105243525 XR_871146 Gm39421 - - 9 F1|9 predicted gene, 39421 ncRNA 105242831 XR_880087 Gm38933 - - 11 C|11 predicted gene, 38933 ncRNA 19719 Mm.871 NM_009053 ENSMUSG00000025158 Rfng - - 11 E2|11 84.53 cM RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 102642616 XR_875918 Gm38619 - - 16 A1|16 predicted gene, 38619 ncRNA 239134 Mm.236557 NM_172810 ENSMUSG00000021933 Gucy1b2 B930025B03|GC-SB2 - 14|14 D1 guanylate cyclase 1, soluble, beta 2 protein-coding 102631847 XR_391936 ENSMUSG00000099799 Gm28260 - - Y B|Y predicted gene 28260 ncRNA 103920 Sic - - - sickly unknown 109651 Tl - - - brachyury-like unknown 77998 Mm.160040 NM_030022 ENSMUSG00000036586 Grifin E130101O17Rik - 5|5 G2 galectin-related inter-fiber protein protein-coding 286942 Mm.308713 NM_001102615 ENSMUSG00000010021 Kif19a Kif19 - 11|11 E2 kinesin family member 19A protein-coding 102465789 NR_106158 ENSMUSG00000106340 Mir290b mmu-mir-290b - 7|7 A1 microRNA 290b ncRNA 100039665 Gm10320 - - 13|13 D1 predicted pseudogene 10320 protein-coding 214597 Mm.379345 NM_172257 ENSMUSG00000034908 Sidt2 B930096O19|BC023957|CGI-40 - 9|9 A5.2 SID1 transmembrane family, member 2 protein-coding 70791 Mm.282700 NM_080636 ENSMUSG00000019143 Hars2 4631412B19Rik|HARSR|HO3|Harsl - 18|18 B2 histidyl-tRNA synthetase 2 protein-coding 102638418 Gm21813 - - Y|Y predicted gene, 21813 protein-coding 108100 Mm.197534 NM_130862 ENSMUSG00000025372 Baiap2 IRSp53|R75030 - 11|11 E2 brain-specific angiogenesis inhibitor 1-associated protein 2 protein-coding 100503023 Gm12843 - - 4|4 53.44 cM predicted gene 12843 ncRNA 105244150 XM_017319363 LOC105244150 - - 2 C1.1 collagen alpha-1(III) chain-like protein-coding 56409 Mm.144699 NM_019837 ENSMUSG00000024213 Nudt3 1110011B09Rik|AA960325|Dipp|Dipp1 - 17|17 A3.3 nudix (nucleotide diphosphate linked moiety X)-type motif 3 protein-coding 105246445 XR_877440 Gm41734 - - 18 D3|18 predicted gene, 41734 ncRNA 14701 Mm.234342 NM_025278 ENSMUSG00000036402 Gng12 2010305F15Rik|AA536815|AI115529|AI314170|AI842738 - 6 C1|6 30.68 cM guanine nucleotide binding protein (G protein), gamma 12 protein-coding 73139 Mm.390409 NM_028448 ENSMUSG00000018509 Cenpv 3110013H01Rik|AA671303|Prr6 - 11|11 B2 centromere protein V protein-coding 546058 Mm.453351 AA386476 - - 8|8 B1.1 expressed sequence AA386476 protein-coding 665743 Gm7765 EG665743 - 16|16 A2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105245502 XR_873402 Gm40950 - - 13 B1|13 predicted gene, 40950 ncRNA 74489 Mm.256468 NR_040352 ENSMUSG00000110140 5430421F17Rik - - 8|8 A2 RIKEN cDNA 5430421F17 gene ncRNA 102467562 n-TKctt5 n-Tk5 - 11 B5|11 nuclear encoded tRNA lysine 5 (anticodon CTT) tRNA 100043127 Gm4246 - - 17|17 B1 predicted gene 4246 pseudo 102634605 Gm32146 - - 7|7 predicted gene, 32146 pseudo 109487 Cplaq3 - - - circadian period of locomotor activity 3 unknown 100039436 Mm.483818 NM_001111315 Mageb16-ps1 EG623523|Gm15072|Mageb16 - X|X F2 melanoma antigen family B, 16, pseudogene 1 pseudo 114577 Hdl4 - - - high density lipoprotein (HDL) level 4 unknown 100417687 Gm12846 - - 4|4 C6 ornithine decarboxylase, structural 1 pseudogene pseudo 18521 Mm.236513 NM_011042 ENSMUSG00000056851 Pcbp2 AW412548|Hnrpx|alphaCP-2 - 15 F3|15 57.61 cM poly(rC) binding protein 2 protein-coding 668144 Rps3a3 EG668144|Gm9000 - 13|13 D2.1 ribosomal protein S3A3 pseudo 74643 Mm.428751 4930422I22Rik - - 10|10 RIKEN cDNA 4930422I22 gene protein-coding 74782 Mm.191281 NM_029102 ENSMUSG00000020251 Glt8d2 1110021D20Rik - 10|10 C1 glycosyltransferase 8 domain containing 2 protein-coding 99311 Mm.294478 NM_133850 ENSMUSG00000056941 Commd7 2310010I22Rik|AW060956|mU3 - 2|2 H1 COMM domain containing 7 protein-coding 73588 Mm.65475 NR_045366 ENSMUSG00000086128 St8sia3os 1700091E21Rik - 18|18 E1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand ncRNA 75793 Mm.23397 NR_102286 4933432K03Rik 1700001C18Rik|4930433G11Rik|AI428127 - 7|7 F2 RIKEN cDNA 4933432K03 gene ncRNA 105245911 XM_011245387 Gm41291 - - 15 B3.1|15 predicted gene, 41291 protein-coding 320872 Mm.445023 NR_040622 ENSMUSG00000085089 Arhgap15os A430092G05Rik - 2|2 B Rho GTPase activating protein 15, opposite strand ncRNA 20623 Mm.257989 NM_133741 ENSMUSG00000038145 Snrk 2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096 - 9|9 F4 SNF related kinase protein-coding 19438 Rb(1.11)2Mpl Rb2Mpl - - Robertsonian translocation, Chr 1 and 11, Montpellier 2 other 106079 AW742793 - - - expressed sequence AW742793 unknown 108167983 LOC108167983 - - 12 A1.2 hippocalcin-like protein 1 pseudo 406209 4930524O07Rik 1700037B06Rik - 9|9 F1 RIKEN cDNA 4930524O07 gene protein-coding 13849 Mm.9075 NM_010145 ENSMUSG00000038776 Ephx1 EH|Eph-1|Eph1|Epxh1|mEH - 1 H4|1 84.48 cM epoxide hydrolase 1, microsomal protein-coding 102640912 XR_376083 Gm36863 - - 3 G3|3 predicted gene, 36863 ncRNA 56381 Mm.299906 NM_019763 ENSMUSG00000040761 Spen Mint|mKIAA0929 - 4|4 D3 spen family transcription repressor protein-coding 668478 Ighv1-9 Gm16697|Igg2a - 12|12 F2 immunoglobulin heavy variable V1-9 other 100416045 Gm17890 - - 13|13 A2 choroidermia pseudogene pseudo 110120389 LOC110120389 - - - VISTA enhancer mm567 biological-region 667587 Gm8717 EG667587 - 19|19 C3 adaptor protein complex AP-2, mu1 pseudogene pseudo 110120448 LOC110120448 - - - VISTA enhancer mm1505 biological-region 105245364 XR_873169 Gm40832 - - 13 A3.1|13 predicted gene, 40832 ncRNA 100534300 Gm20679 - - 7|7 A1 vomeronasal 2, receptor 37 pseudogene pseudo 100417786 Gm15806 - - 16|16 A1 aldo-keto reductase family 1, member B8 pseudogene pseudo 102639105 XM_006496590 Gm35498 - - 1 C5|1 predicted gene, 35498 protein-coding 100422782 Gm14607 - - X A5|X 29.26 cM ribosomal protein L9 pseudogene pseudo 321021 NM_177317 ENSMUSG00000071276 Fpr-rs7 - - 17|17 A3.2 formyl peptide receptor, related sequence 7 unknown 52782 D16Bwg1168e - - - DNA segment, Chr 16, Brigham & Women's Genetics 1168 expressed unknown 105246290 XR_876865 Gm41594 - - 17 C|17 predicted gene, 41594 ncRNA 102634946 XR_384395 Gm32406 - - 15 F1|15 predicted gene, 32406 ncRNA 73582 Mm.260753 NM_028576 ENSMUSG00000071037 Camkmt 1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT - 17|17 E4 calmodulin-lysine N-methyltransferase protein-coding 111819 Iapls1-46 - - - intracisternal A particle, lymphocyte specific 1-46 other 62126 D13Mit18 - - 13 14.44 cM DNA segment, Chr 13, Massachusetts Institute of Technology 18 unknown 23872 Mm.290207 NM_011809 ENSMUSG00000022895 Ets2 AU022856|Ets-2 - 16 C4|16 56.64 cM E26 avian leukemia oncogene 2, 3' domain protein-coding 105244406 XR_879924 Gm40019 - - 11 B3|11 predicted gene, 40019 ncRNA 108663992 LOC108663992 - - 6 G3 ES cell cis-regulatory motif 1b biological-region 112318 Mwq2 - - - molecular weight of quadriceps QTL 2 unknown 102631757 Mm.373036 NR_110502 ENSMUSG00000086010 LOC102631757 - - 17 A3.3 uncharacterized LOC102631757 ncRNA 347740 Mm.324242 NR_024329 ENSMUSG00000102869 2900097C17Rik 1810005K14Rik|4930563C06Rik - 2|2 H1 RIKEN cDNA 2900097C17 gene ncRNA 13236 Mm.376982 NM_007849 ENSMUSG00000094687 Defa25 Defcr-2|Defcr2|Defcr25 - 8 A2|8 defensin, alpha, 25 protein-coding 27551 D5Buc8 344L2.T7 - 5 37.42 cM DNA segment, Chr 5, Bucan 8 unknown 102637728 Gm34465 - - 12 F2|12 predicted gene, 34465 pseudo 210463 Mm.26555 NM_172378 ENSMUSG00000022366 Slc22a22 oat-pg - 15|15 D1 solute carrier family 22 (organic cation transporter), member 22 protein-coding 103052 AW822039 - - - expressed sequence AW822039 unknown 109810 H24 H-24 - - histocompatibility 24 protein-coding 791369 Mm.370758 Gm9889 - - - predicted gene 9889 unknown 70386 2210017G18Rik - - 6|6 RIKEN cDNA 2210017G18 gene protein-coding 19886 Mm.236163 NM_011282 ENSMUSG00000019893 Ros1 Ros-1|c-ros - 10 B3|10 26.18 cM Ros1 proto-oncogene protein-coding 97229 C78200 - - - expressed sequence C78200 protein-coding 493084 Ses2 - - 7 48.36 cM salmonella enteritidis susceptibility 2 unknown 54170 Mm.220922 NM_017475 ENSMUSG00000028646 Rragc AU041672|Gtr2|RAGC|TIB929|YGR163W - 4|4 D2.2 Ras-related GTP binding C protein-coding 100041882 Gm13094 - - 4|4 E2 predicted gene 13094 pseudo 623341 Gm6418 EG623341 - X|X E1 ubinuclein 2 pseudogene pseudo 245537 Mm.121508 NM_172932 ENSMUSG00000031302 Nlgn3 A230085M13Rik|HNL3|NL3|NLG3 - X|X D neuroligin 3 protein-coding 385500 Gm5402 EG385500 - X|X C3 SUMO/sentrin specific peptidase pseudogene pseudo 105244522 XR_867543 Gm40116 - - 3 F2.2|3 predicted gene, 40116 ncRNA 432591 Mm.370372 NM_001205037 Gm11544 - - 11|11 D predicted gene 11544 protein-coding 108167664 XR_001779226 Gm46120 - - 9 D|9 predicted gene, 46120 ncRNA 20315 Mm.303231 NM_013655 ENSMUSG00000061353 Cxcl12 Pbsf|Scyb12|Sdf1|Tlsf|Tpar1 - 6 54.81 cM|6 F1 chemokine (C-X-C motif) ligand 12 protein-coding 101055915 XR_001783219 LOC101055915 - - 2 H4 40S ribosomal protein S8 pseudogene pseudo 85168 DXMit233 - - X 57.35 cM DNA Segment, Chr X, Massachusetts Institute of Technology 233 unknown 15731 Iap8-1 Iap(Agt) - - intracisternal A particles, Agt linked other 55984 Mm.9998 NM_018883 ENSMUSG00000020785 Camkk1 AI846603|CaMKKalpha|Camkk - 11|11 B4 calcium/calmodulin-dependent protein kinase kinase 1, alpha protein-coding 112141 Afw4 - - - abdominal fat weight QTL 4 unknown 320102 A730008I21Rik - - 2|2 RIKEN cDNA A730008I21 gene protein-coding 633740 Trav5-1 Gm7124 - 14|14 C2 T cell receptor alpha variable 5-1 other 386655 Mm.258201 NM_198425 ENSMUSG00000046058 Eid2 Cri2|EID-2 - 7|7 A3 EP300 interacting inhibitor of differentiation 2 protein-coding 105246004 Gm41371 - - 15|15 predicted gene, 41371 ncRNA 100034868 Sgp3 - - - serum gp70 production 3 unknown 100038674 Mm.484523 Gm10764 - - - predicted gene 10764 unknown 100043224 Mm.478257 NM_001166637 ENSMUSG00000094314 Gm4301 - - 10 D1|10 predicted gene 4301 protein-coding 85090 D1Mit17 Tgfbkm2|Tgfbm2 - 1 95.03 cM DNA segment, Chr 1, Massachusetts Institute of Technology 17 unknown 102639234 Gm21879 - - Y|Y predicted gene, 21879 protein-coding 667525 Rps19-ps2 EG667525|Gm8683 - 14|14 C2 ribosomal protein S19, pseudogene 2 pseudo 102637243 XR_374573 Gm34110 - - 2 C1.3|2 predicted gene, 34110 ncRNA 102466775 NR_105928 ENSMUSG00000098419 Mir6963 Gm27724|mmu-mir-6963 - 15|15 F3 microRNA 6963 ncRNA 102634994 XR_381420 Gm32443 - - 12 A2|12 predicted gene, 32443 ncRNA 108168667 XM_017318878 LOC108168667 - - Y E Y-linked testis-specific protein 1-like protein-coding 70639 Mm.181624 5730521K06Rik - - 15|15 RIKEN cDNA 5730521K06 gene protein-coding 53729 D17Zt3 D17Mia3 - - DNA segment, Chr 17, Zdenek Trachtulec 3 unknown 666122 Mm.336333 NM_001359702 Gm14595 - - X A5|X predicted gene 14595 protein-coding 260315 Mm.225050 NM_177797 ENSMUSG00000020181 Nav3 4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3 - 10|10 D1 neuron navigator 3 protein-coding 74749 Mm.482846 5830405M20Rik - - 1|1 H4-H5 RIKEN cDNA 5830405M20 gene ncRNA 100039444 Gm20804 - - Y|Y predicted gene, 20804 protein-coding 69123 Mm.482475 NM_026947 ENSMUSG00000021416 Eci3 1810022C23Rik|Kseg2 - 13|13 A3.3 enoyl-Coenzyme A delta isomerase 3 protein-coding 319555 Mm.390076 NM_176940 ENSMUSG00000048148 Nwd1 A230063L24Rik - 8|8 B3.3 NACHT and WD repeat domain containing 1 protein-coding 100503482 Gm649 - - X C1|X 39.95 cM melanoma antigen family A pseudogene pseudo 100043037 Mm.484998 NM_001167573 ENSMUSG00000096348 Gm10666 Vmn1r141 - 7|7 A3 predicted gene 10666 protein-coding 51836 DXGgc3e - - - DNA segment, Chr X, G. Consalez 3, expressed unknown 93701 Mm.247203 NM_033576 ENSMUSG00000103585 Pcdhgb4 - - 18|18 B3 protocadherin gamma subfamily B, 4 protein-coding 219038 Mm.296425 NM_001128634 ENSMUSG00000008813 Tppp2 Gm1790|Gm77 - 14|14 C1 tubulin polymerization-promoting protein family member 2 protein-coding 100041374 Gm3298 - - 14 A1|14 predicted gene 3298 protein-coding 100861594 Gm21061 - - X A3.1|X predicted gene, 21061 pseudo 109280120 LOC109280120 Mm1369 - - VISTA enhancer mm1369 biological-region 547043 Gm6018 EG547043 - 9|9 D MAD1 mitotic arrest deficient 1-like 1 pseudogene pseudo 100042471 Gm3861 - - 15|15 E3 predicted gene 3861 pseudo 105242947 Gm39018 - - 7|7 predicted gene, 39018 ncRNA 105244502 XR_867473 Gm26654 - - 3 F2.1|3 predicted gene, 26654 ncRNA 108720146 LOC108720146 - - 5 F ES cell cis-regulatory motif 10b biological-region 381483 NM_001033772 Gm5149 EG381483|Gm42649 - 3 H3|3 predicted gene 5149 unknown 12466 Mm.153159 NM_009838 Cct6a CCT-zeta|CCT-zeta-1|Cct6|Cctz-1|TCP-1-zeta - 5|5 G1.3 chaperonin containing Tcp1, subunit 6a (zeta) protein-coding 668659 Gm9290 EG668659 - 14 E2.1|14 high mobility group box 2 pseudogene pseudo 72090 Mm.33403 NM_028093 ENSMUSG00000036813 Entpd8 - - 2|2 A3 ectonucleoside triphosphate diphosphohydrolase 8 protein-coding 100035748 Vent3 Vent7c - 7 2.02 cM ventricular size 3 unknown 62749 D17Mit206 - - 17 45.2 cM DNA segment, Chr 17, Massachusetts Institute of Technology 206 unknown 102632680 Gm30689 - - 14|14 predicted gene, 30689 ncRNA 102640468 XR_001782861 LOC102640468 - - X C3 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 pseudogene pseudo 105710 Mm.388034 BB086117 - - - expressed sequence BB086117 unknown 399101 Mm.486919 NR_002904 ENSMUSG00000085241 Snhg3 Rnu17d|U17HG - 4|4 D2.3 small nucleolar RNA host gene 3 ncRNA 319322 Mm.196532 NM_030109 ENSMUSG00000024853 Sf3b2 145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150 - 19|19 A splicing factor 3b, subunit 2 protein-coding 100043686 Mm.275426 NM_001160151 ENSMUSG00000093931 Amy2a3 mAmy2-4 - 3 F3|3 amylase 2a3 protein-coding 102633607 XR_377766 Gm31391 - - 6 C1|6 predicted gene, 31391 ncRNA 100217461 NR_028555 ENSMUSG00000077704 Snord89 MBII-289 - 1 B|1 small nucleolar RNA, C/D box 89 snoRNA 319237 9330112F22Rik - - 17|17 RIKEN cDNA 9330112F22 gene protein-coding 20202 Mm.2128 NM_009114 ENSMUSG00000056071 S100a9 60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14 - 3 F1|3 39.91 cM S100 calcium binding protein A9 (calgranulin B) protein-coding 100036140 Moo1 Mobe1 - 2 38.54 cM modifier of obesity 1 unknown 245839 Mm.207063 NM_153052 ENSMUSG00000015443 Gzmn GrN - 14 C3|14 28.19 cM granzyme N protein-coding 106931 Mm.329299 NM_134112 ENSMUSG00000036225 Kctd1 4933402K10Rik|AI661543|AW553000 - 18|18 A1 potassium channel tetramerisation domain containing 1 protein-coding 102632972 Gm30913 - - 12|12 predicted gene, 30913 ncRNA 78719 D530034E23Rik - - 4|4 RIKEN cDNA D530034E23 gene protein-coding 109507 Alcp6 - - 2 103.43 cM alcohol preference locus 6, female specific unknown 102631621 XR_380784 Gm29916 - - 10 D1|10 predicted gene, 29916 ncRNA 78079 9130219B18Rik - - 13|13 RIKEN cDNA 9130219B18 gene protein-coding 102633200 XR_386316 Gm31088 - - 18 E2|18 predicted gene, 31088 ncRNA 74530 Mm.415375 NM_172419 ENSMUSG00000045008 9030612E09Rik - - 10|10 B2 RIKEN cDNA 9030612E09 gene ncRNA 238662 Mm.295939 NM_001167593 ENSMUSG00000091311 Spata31d1b EG238662|Fam75d1b|Gm4934 - 13|13 B2 spermatogenesis associated 31 subfamily D, member 1B protein-coding 258023 Mm.377331 NM_001011803 ENSMUSG00000096566 Olfr1306 MOR245-15 - 2|2 E3 olfactory receptor 1306 protein-coding 381356 Mm.150270 NM_029862 ENSMUSG00000015488 Cacfd1 5930434B04Rik|mFwe - 2|2 A3 calcium channel flower domain containing 1 protein-coding 73973 Mm.399173 XR_878373 4930434B07Rik - - 1|1 D RIKEN cDNA 4930434B07 gene ncRNA 75624 Mm.26833 NM_175224 ENSMUSG00000005813 Metap1 1700029C17Rik|AW047992|mKIAA0094 - 3|3 G3 methionyl aminopeptidase 1 protein-coding 104045 Gtl8 - - - gene trap locus 8 unknown 106335 Mm.442327 AU021884 - - - expressed sequence AU021884 unknown 110920 Mm.26704 NM_030201 ENSMUSG00000032932 Hspa13 1600002I10Rik|AV006182|B230217N24Rik|Stch - 16 C3.1|16 43.36 cM heat shock protein 70 family, member 13 protein-coding 105260 Mm.448243 D930043N17Rik AU015682 - - RIKEN cDNA D930043N17 gene protein-coding 107511 Sto1 Sto-1 - - 16 steroid alpha-hydroxylase 1 protein-coding 53019 I16T7 - - - DNA segment, I16T7 unknown 225884 Mm.440201 NM_144869 ENSMUSG00000058216 Gstp3 - - 19|19 A glutathione S-transferase pi 3 protein-coding 102634838 XR_377663 Gm32328 - - 6 B3|6 predicted gene, 32328 ncRNA 62302 D1Mit153 - - 1 94.73 cM DNA segment, Chr 1, Massachusetts Institute of Technology 153 unknown 626549 Gm6684 EG626549 - 19|19 B glutathione S-transferase kappa 1 pseudo 100124624 NR_037249 ENSMUSG00000096027 Mir467a-2 Mirn467a-2|mmu-mir-467a-2 - 2 A1|2 microRNA 467a-2 ncRNA 69506 In(10)17Rk-p In(10)17Rk|In17Rk - 10 A2|10 inversion, Chr 10, Roderick 17, proximal other 100036223 Ofca4 - - - open field activity and conditioned avoidance 4 unknown 69740 Mm.5915 NM_027193 ENSMUSG00000033554 Dph5 2410012M04Rik|AU045680|C80186 - 3|3 G1 diphthamide biosynthesis 5 protein-coding 13255 Del(1)6H Del6H - - deletion, Chr 1, Harwell 6 other 100418009 Gm18944 - - 7|7 E3 serine/threonine/tyrosine interaction protein pseudogene pseudo 74177 Mm.491232 2310007O11Rik - - 18|18 RIKEN cDNA 2310007O11 gene protein-coding 100043528 Gm4501 - - 7|7 A3 chromobox protein homolog 3 pseudogene pseudo 100043782 Gm4644 - - 9|9 F2 predicted gene 4644 pseudo 320626 Mm.446091 NR_040626 ENSMUSG00000090191 9230105E05Rik - - 10|10 D2 RIKEN cDNA 9230105E05 gene ncRNA 102639038 XR_383586 Gm35450 - - 14 D3|14 predicted gene, 35450 ncRNA 102636223 Gm33352 - - 11|11 predicted gene, 33352 ncRNA 116861 Prdt1 - - 2 65.13 cM prion disease incubation time 1 unknown 104406 Exz1 Exz-1 - - adrenal X zone degeneration 1 protein-coding 102640828 Gm36804 - - 18 E1|18 predicted gene, 36804 pseudo 320184 Mm.390882 NM_177093 ENSMUSG00000034158 Lrrc58 1810012N18Rik|C330018J07Rik - 16|16 B3 leucine rich repeat containing 58 protein-coding 100861747 Gm5385 EG385344 - X A4|X 23.19 cM 3-phosphoglycerate dehydrogenase pseudogene pseudo 545756 Gm5867 EG545756 - 5|5 C3.1 predicted gene 5867 pseudo 667156 Gm8486 667311|EG667156|Gm8567 - 7|7 A3 NLR family, pyrin domain containing 4E pseudogene pseudo 70575 Mm.40954 NM_027469 ENSMUSG00000013150 Gfod2 5730466C23Rik - 8|8 D3 glucose-fructose oxidoreductase domain containing 2 protein-coding 12968 Mm.258170 NM_007777 ENSMUSG00000070870 Cryge Cryg-2|Cryg-6|DGcry-2|Elo - 1 C2|1 32.8 cM crystallin, gamma E protein-coding 666681 Gm12460 - - 4|4 B1 predicted gene 12460 pseudo 100043079 Mm.482051 NM_001167164 ENSMUSG00000092297 Gm4214 Vmn1r161 - 7 A3|7 predicted gene 4214 protein-coding 102640925 Gm36872 - - 6|6 predicted gene, 36872 ncRNA 105246414 XR_877332 Gm41704 - - 18 B3|18 predicted gene, 41704 ncRNA 100035482 Gf4 - - - gonadal fat pad weight 4 unknown 100042659 Gm3952 - - 8 E2|8 predicted gene 3952 protein-coding 16353 Mm.491385 NR_015351 ENSMUSG00000100826 Ipw - - 7 B5|7 34.0 cM imprinted gene in the Prader-Willi syndrome region ncRNA 72234 1700020B03Rik - - 16|16 RIKEN cDNA 1700020B03 gene protein-coding 65102 Mm.340248 NM_022988 ENSMUSG00000026036 Nif3l1 1110030G24Rik - 1|1 C1.3 Ngg1 interacting factor 3-like 1 (S. pombe) protein-coding 16467 Mm.127681 NM_178662 ENSMUSG00000034958 Atcay 3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji - 10 C1|10 39.72 cM ataxia, cerebellar, Cayman type protein-coding 60733 D1Mit19 - - 1 38.01 cM DNA segment, Chr 1, Massachusetts Institute of Technology 19 unknown 76412 Mm.69337 XR_379144 1700019J19Rik - - 9|9 A1 RIKEN cDNA 1700019J19 gene unknown 319807 Mm.319487 NM_028470 ENSMUSG00000090061 Nwd2 3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239 - 5|5 C3.1 NACHT and WD repeat domain containing 2 protein-coding 665538 Gm14489 - - 2|2 H4 neuropeptides B/W receptor 2 pseudogene pseudo 106068 Mm.212813 NM_001033219 ENSMUSG00000079020 Slc45a4 9330175B01Rik|AW552276 - 15|15 D3 solute carrier family 45, member 4 protein-coding 552882 LOC552882 - - - uncharacterized LOC552882 unknown 62426 D12Mit182 - - 12 5.52 cM DNA segment, Chr 12, Massachusetts Institute of Technology 182 unknown 78535 C430004N12Rik - - X|X RIKEN cDNA C430004N12 gene protein-coding 61891 D1Mit432 - - 1 10.02 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 432 unknown 62664 D15Mit119 - - 15 37.7 cM DNA segment, Chr 15, Massachusetts Institute of Technology 119 unknown 110716 Idd13 - - - insulin dependent diabetes susceptibility 13 protein-coding 670110 Vmn2r-ps13 - - 3|3 E1 vomeronasal 2, receptor, pseudogene 13 pseudo 78918 4930455M05Rik - - 13|13 RIKEN cDNA 4930455M05 gene protein-coding 79264 Mm.32368 NM_030675 ENSMUSG00000000600 Krit1 2010007K12Rik|A630036P20Rik|AA432855|AI450393|AI643869|BB155247|BB235701|Ccm1 - 5 A1|5 2.26 cM KRIT1, ankyrin repeat containing protein-coding 21304 T(X;4)1Rl T1Rl - - reciprocal translocation, Chr X and 4, Russell 1 other 368202 Mm.253822 NM_001001650 ENSMUSG00000049013 Prss48 Esspl|Gm1019 - 3|3 F1 protease, serine 48 protein-coding 667100 Rpl18-ps1 Gm11580|Rpl18-rs8 - 1 C2|1 30.58 cM ribosomal protein L18, pseudogene 1 pseudo 70909 Mm.158488 NM_027600 ENSMUSG00000026734 4921504E06Rik 4921522E24Rik - 2 A3|2 RIKEN cDNA 4921504E06 gene protein-coding 360085 D17Jcs50 - - - DNA segment, Chr 17, John C. Schimenti 50 unknown 108168038 XR_001780831 LOC108168038 - - 13 D2.1 uncharacterized LOC108168038 ncRNA 320008 A330078L11Rik - - 3|3 RIKEN cDNA A330078L11 gene protein-coding 64214 Mm.253927 NM_022881 ENSMUSG00000026357 Rgs18 - - 1 F|1 62.99 cM regulator of G-protein signaling 18 protein-coding 258104 Olfr1150-ps1 MOR264-11 - 2|2 D olfactory receptor 1150, pseudogene 1 pseudo 100302374 Cyslter - - - leukotriene E4 receptor protein-coding 102635130 Mm.404427 XR_386334 Gm32548 - - 18 E2|18 predicted gene, 32548 ncRNA 53062 EC79RR - - - DNA segment, EC79RR unknown 14083 Mm.254494 NM_007982 ENSMUSG00000022607 Ptk2 FADK 1|FAK|FRNK|Fadk|p125FAK - 15 D3|15 33.94 cM PTK2 protein tyrosine kinase 2 protein-coding 237611 Mm.32087 NM_177707 ENSMUSG00000040287 Stac3 9830125E18 - 10|10 D3 SH3 and cysteine rich domain 3 protein-coding 111320 Hmgn1-rs17 Hmg14-rs17 - - high mobility group nucleosomal binding domain 1, related sequence 17 pseudo 66191 Mm.28593 NM_025409 ENSMUSG00000090000 Ier3ip1 1110057H19Rik|AI644142|AL022842|AL022863|AV026606 - 18|18 E3 immediate early response 3 interacting protein 1 protein-coding 111705 Igh-V3609 - - - immunoglobulin heavy chain (V3609 family) other 100039263 Gm14428 - - 2|2 H4 predicted gene 14428 pseudo 237008 Gm4914 EG237008 - X E1|X methylthioadenosine phosphorylase pseudogene pseudo 53087 M-02922 - - - DNA segment, M-02922 unknown 102633243 XR_391001 Gm31118 - - 4 E2|4 predicted gene, 31118 ncRNA 81000 Mm.246689 NM_030730 ENSMUSG00000040661 Rad54l2 Arip4|D130058C05|G630026H09Rik|Srisnf2l - 9|9 F1 RAD54 like 2 (S. cerevisiae) protein-coding 100039884 Gm11256 - - 4|4 C3 ribosomal protein L7A pseudogene pseudo 75830 4930544L18Rik - - 14|14 RIKEN cDNA 4930544L18 gene protein-coding 102637970 XM_006523128 Gm34650 - - 16 C3.3|16 predicted gene, 34650 protein-coding 66214 Mm.29811 NM_025427 ENSMUSG00000022018 Rgcc 1190002H23Rik|Rgc-32|Rgc32 - 14|14 D3 regulator of cell cycle protein-coding 269120 Mm.59985 NM_054076 ENSMUSG00000010311 Optc - - 1 E4|1 58.02 cM opticin protein-coding 100503066 Gm14966 - - 19|19 4.47 cM predicted gene 14966 ncRNA 241053 Rpl12-ps1 EG241053|Gm4957 - 1|1 B ribosomal protein L12, pseudogene 1 pseudo 110192 Tam1 Tam-1 - - tosyl arginine methylesterase 1 protein-coding 69185 Mm.29019 NM_026981 ENSMUSG00000023330 Dtwd1 1810033A06Rik - 2|2 F1 DTW domain containing 1 protein-coding 102638110 LOC102638110 - - 14 A1 uncharacterized LOC102638110 pseudo 100302498 Mm.453536 NR_028078 ENSMUSG00000064901 Snora21 MBI-3 - 11|11 D small nucleolar RNA, H/ACA box 21 snoRNA 384783 Mm.407207 NM_001081212 ENSMUSG00000038894 Irs2 Irs-2 - 8 A1.1|8 5.35 cM insulin receptor substrate 2 protein-coding 257890 Mm.337259 NM_206896 ENSMUSG00000061616 Olfr12 MOR208-5 - 1 D|1 46.53 cM olfactory receptor 12 protein-coding 56485 Mm.260220 NM_019741 ENSMUSG00000028976 Slc2a5 AI526984|Glut5|Slc5a - 4|4 E2 solute carrier family 2 (facilitated glucose transporter), member 5 protein-coding 666834 Gm8317 EG666834 - 14|14 C1 predicted gene 8317 pseudo 102639601 XR_388157 Gm35874 - - 8 E1|8 predicted gene, 35874 ncRNA 70645 Mm.246412 NM_001042653 ENSMUSG00000072980 Oip5 5730547N13Rik|Lint-25|Ms18b - 2|2 E5 Opa interacting protein 5 protein-coding 105245224 XR_871852 Gm40708 - - 10 C1|10 predicted gene, 40708 ncRNA 100040027 Gm2559 - - 15 A1|15 predicted gene 2559 pseudo 68128 Mm.426304 NR_015601 Fam120aos C030044B11Rik - 13|13 A5 family with sequence similarity 120A, opposite strand ncRNA 100035991 Mpcp3 - - - myeloid progenitor cell proliferation 3 unknown 56594 177i23Sp6 - - - DNA segment, 177i23Sp6 unknown 62756 D17Mit188 - - 17 51.8 cM DNA segment, Chr 17, Massachusetts Institute of Technology 188 unknown 67842 Mm.180338 NM_026403 ENSMUSG00000019297 Nop9 2610027L16Rik - 14|14 C3 NOP9 nucleolar protein protein-coding 111840 Iapls2-11 - - - intracisternal A particle, lymphocyte specific 2-11 other 665945 Gm7859 EG665945 - 15 D2|15 NFU1 iron-sulfur cluster scaffold homolog pseudogene pseudo 70277 Mm.155620 2310026G15Rik - - 15|15 RIKEN cDNA 2310026G15 gene protein-coding 432867 Mm.99387 NM_001037751 ENSMUSG00000075574 Defb48 Defb42|EG432867 - 14 D1|14 defensin beta 48 protein-coding 102635349 Mm.50828 XR_385015 Gm38477 - - 16 C3.3|16 predicted gene, 38477 ncRNA 73628 Mm.398337 NR_040651 ENSMUSG00000085263 1700125G02Rik - - 4|4 D2.2 RIKEN cDNA 1700125G02 gene ncRNA 66229 Mm.218533 NM_025433 ENSMUSG00000063888 Rpl7l1 1500016H10Rik - 17|17 C ribosomal protein L7-like 1 protein-coding 215494 Mm.402151 NM_153540 ENSMUSG00000066235 Pomgnt2 Ago61|C85492|Gtdc2 - 9|9 F4 protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2 protein-coding 654358 Gm7331 EG654358 - X F4|X ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene pseudo 666482 Gm13169 - - 4|4 E1 predicted gene 13169 pseudo 100113481 Trav23 - - 14|14 C2 T cell receptor alpha variable 23 pseudo 20234 Mm.390958 NM_011321 ENSMUSG00000024128 Sbp AV082137|AV082259|p25 - 17|17 A3.3 spermine binding protein protein-coding 100040766 Mm.386915 NM_001177364 ENSMUSG00000079429 Mroh2a Heatr7b1 - 1 D|1 maestro heat-like repeat family member 2A protein-coding 101055903 Gm29741 - - 3 C|3 predicted gene, 29741 pseudo 102635397 XR_001782704 Gm32750 - - 19 B|19 predicted gene, 32750 ncRNA 17654 Ms6hm2 - - - minisatellite 6 hypermutable 2 other 22427 Mm.228805 NM_011721 ENSMUSG00000031583 Wrn AI846146 - 8 A3|8 20.3 cM Werner syndrome RecQ like helicase protein-coding 24059 Mm.207106 NM_033314 ENSMUSG00000032548 Slco2a1 2310021C19Rik|Pgt|Slc21a2|mPgt - 9 F1|9 54.72 cM solute carrier organic anion transporter family, member 2a1 protein-coding 102635094 XR_381086 Gm32517 - - 11 A3.2|11 predicted gene, 32517 ncRNA 22256 Mm.1393 NM_011677 ENSMUSG00000029591 Ung UNG1|UNG2 - 5|5 F uracil DNA glycosylase protein-coding 100038993 Mm.458019 NM_001100596 ENSMUSG00000095623 Gm2002 - - 4 A5|4 predicted gene 2002 protein-coding 102637347 XR_386138 Gm34182 - - 18 B1|18 predicted gene, 34182 ncRNA 667469 Mm.484971 NM_001166750 ENSMUSG00000096071 Vmn1r143 EG667469|Gm8650 - 7|7 A3 vomeronasal 1 receptor 143 protein-coding 100040863 Gm3008 - - 14 B|14 predicted gene 3008 pseudo 320136 4932442A14Rik - - 15|15 RIKEN cDNA 4932442A14 gene protein-coding 72915 2900017F05Rik - - 19|19 RIKEN cDNA 2900017F05 gene protein-coding 108168309 XR_001782003 Gm46569 - - 16 C3.3|16 predicted gene, 46569 ncRNA 414104 Mm.335706 NR_153315 ENSMUSG00000085060 E330016L19Rik 100042115|Gm3677 - X|X A3.1 RIKEN cDNA E330016L19 gene ncRNA 100040322 Mm.133867 NR_015471 ENSMUSG00000071181 3830408C21Rik - - 13|13 D2.1 RIKEN cDNA 3830408C21 gene ncRNA 102634201 XR_388656 Gm31842 - - 11 B1.3|11 predicted gene, 31842 ncRNA 100041095 Vstm1 - - 7 A1|7 V-set and transmembrane domain containing 1 protein-coding 105243280 Mm.404124 XR_879162 Gm39244 Gm45529 - 8 D3|8 predicted gene, 39244 ncRNA 100038467 Mm.450628 XR_381847 A630072L19Rik - - 12 E|12 RIKEN cDNA A630072L19 gene ncRNA 102640054 Gm28741 - - Y|Y predicted gene 28741 ncRNA 667281 Mm.484254 NM_001177775 ENSMUSG00000075297 H60b EG667281 - 10|10 A3 histocompatibility 60b protein-coding 19821 Mm.474038 NM_011277 ENSMUSG00000026484 Rnf2 AI326319|AI450156|AU019207|Ring1B|dinG - 1|1 G1 ring finger protein 2 protein-coding 98262 Mm.130344 B230337E12Rik AI115432 - - RIKEN cDNA B230337E12 gene protein-coding 100043373 Gm4398 - - 7 B1|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 108167761 XR_001779660 Gm46183 - - 10 D2|10 predicted gene, 46183 ncRNA 100042947 Gm14816 - - X C3|X predicted gene 14816 protein-coding 100628609 NR_039554 ENSMUSG00000093298 Mir3473b mmu-mir-3473b - 10 B2|10 22.64 cM microRNA 3473b ncRNA 27622 D11Moh8 - - - DNA segment, Chr 11, KL Mohlke 8 unknown 216033 Mm.444692 NM_177612 ENSMUSG00000060843 Ctnna3 4930429L08Rik|4933408A16|Catna3|Vr22 - 10|10 B4-B5.1 catenin (cadherin associated protein), alpha 3 protein-coding 100503980 Gm11483 - - 4|4 34.02 cM predicted gene 11483 ncRNA 625409 Gm6581 EG625409 - 9 A3|9 predicted gene 6581 pseudo 21104 T(16;19)239Dn T239Dn - - reciprocal translocation, Chr 16 and 19, Davisson 239 other 667503 XM_006516991 Gm8672 EG667503 - 13|13 A5 predicted gene 8672 protein-coding 62661 D15Mit110 - - 15 9.17 cM DNA segment, Chr 15, Massachusetts Institute of Technology 110 unknown 78818 5830407P18Rik 5430437C10Rik - 14|14 RIKEN cDNA 5830407P18 gene protein-coding 100418396 Gm12220 - - 11|11 B1.3 solute carrier family 22 (organic cation transporter), member 4 pseudogene pseudo 108168029 XR_001780685 Gm46377 - - 12 E|12 predicted gene, 46377 ncRNA 99213 AU022092 - - - expressed sequence AU022092 unknown 100417142 Gm12047 - - 11|11 A3.1 myc induced nuclear antigen pseudogene pseudo 16670 Mm.4161 NM_010665 ENSMUSG00000046095 Krt32 Ha3|Hka2|K32|Krt1-2|Krtha2 - 11 D|11 63.4 cM keratin 32 protein-coding 58230 Mm.305994 NM_021419 ENSMUSG00000090083 Rnf8 3830404E21Rik|AIP37|laXp180 - 17|17 A3.3 ring finger protein 8 protein-coding 24050 Mm.309707 NM_011889 ENSMUSG00000022456 Sept3 3110018K01Rik|AV154067|B530002E20Rik|Sep3 - 15|15 E1 septin 3 protein-coding 108168463 Gm46682 - - X A1.1|X predicted gene, 46682 pseudo 102633419 Mm.444665 XR_874634 Gm31251 - - 14 C3|14 predicted gene, 31251 ncRNA 54710 Mm.274426 NM_018805 ENSMUSG00000070407 Hs3st3b1 3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B - 11 B3|11 39.47 cM heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 protein-coding 258544 Mm.377560 NM_146551 ENSMUSG00000049217 Olfr788 MOR111-4 - 10|10 D3 olfactory receptor 788 protein-coding 545660 Mm.331722 NM_001033982 ENSMUSG00000073794 I0C0044D17Rik - - 4|4 C6 RIKEN cDNA I0C0044D17 gene ncRNA 100041879 Mm.394304 XR_001782441 Gm3561 - - 18 B1|18 predicted gene 3561 protein-coding 106906 Mm.388060 AI450241 - - - expressed sequence AI450241 unknown 61594 D9Mit279 - - 9 69.87 cM DNA segment, Chr 9, Massachusetts Institute of Technology 279 unknown 105247173 XR_881448 Gm42318 - - 4 D2.3|4 predicted gene, 42318 ncRNA 76763 Mm.291758 NM_029730 ENSMUSG00000061778 Mospd2 2410013I23Rik - X|X F5 motile sperm domain containing 2 protein-coding 100124435 NR_030552 ENSMUSG00000077954 Mir297a-4 Mirn297a-4 - 2 A1|2 microRNA 297a-4 ncRNA 12914 Mm.132238 NM_001025432 ENSMUSG00000022521 Crebbp AW558298|CBP|CBP/p300|KAT3A|p300/CBP - 16 A1|16 2.4 cM CREB binding protein protein-coding 13796 Mm.391473 NM_010131 ENSMUSG00000033726 Emx1 - - 6 C3|6 37.21 cM empty spiracles homeobox 1 protein-coding 676954 Gm9699 - - 13|13 A5 predicted gene 9699 pseudo 102633395 Gm31230 - - 5 E1|5 predicted gene, 31230 pseudo 108167399 LOC108167399 - - - Ig heavy chain V region 6.96-like other 239122 Mm.205022 NM_001081024 ENSMUSG00000071350 Setdb2 Clld8|Gm293|KMT1F - 14|14 C3 SET domain, bifurcated 2 protein-coding 110344 Tel17q - - - telomeric sequence, Chr 17, q arm protein-coding 102640718 XR_380911 Gm36719 - - 10 D3|10 predicted gene, 36719 ncRNA 20693 spc - - - sparse coat unknown 77642 C330001P17Rik - - 7|7 RIKEN cDNA C330001P17 gene protein-coding 383717 Gm14460 - - 2|2 C3 ribosomal protein 10 pseudogene pseudo 278679 Mm.440965 NM_001024848 ENSMUSG00000068252 Apol7b - - 15|15 D3 apolipoprotein L 7b protein-coding 105244732 XR_868373 Gm40290 - - 5 B3|5 predicted gene, 40290 ncRNA 17885 Mm.340163 NM_177369 ENSMUSG00000055775 Myh8 4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp - 11 B3|11 40.59 cM myosin, heavy polypeptide 8, skeletal muscle, perinatal protein-coding 100042294 Mm.83642 XR_877751 Gm3775 - - 19 B|19 predicted gene 3775 ncRNA 66910 Mm.33964 NM_025838 ENSMUSG00000020895 Tmem107 1110004B13Rik|2810049P21Rik - 11|11 B3 transmembrane protein 107 protein-coding 76942 Mm.261468 NM_029806 ENSMUSG00000030484 Lypd5 2210003I03Rik|2310011E23Rik - 7|7 A3 Ly6/Plaur domain containing 5 protein-coding 100034763 Mnif3 - - - macronutrient intake, fat 3 unknown 105246636 XR_878179 LOC105246636 - - X C3 uncharacterized LOC105246636 ncRNA 14411 Mm.274506 NM_133661 ENSMUSG00000030109 Slc6a12 BGT1|GAT-2|GAT2|Gabt2 - 6|6 F1 solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12 protein-coding 100418029 Gm18954 - - 12|12 B1 heat shock protein 90, beta (Grp94), member 1 pseudogene pseudo 100504654 Gm10736 - - 13|13 63.35 cM predicted gene 10736 ncRNA 102635155 XR_384399 Gm32564 - - 15 F1|15 predicted gene, 32564 ncRNA 100418387 Gm11896 - - 4|4 A3 KRR1, small subunit (SSU) processome component, homolog pseudogene pseudo 14635 Mm.2820 NM_016905 ENSMUSG00000020766 Galk1 AA409894|GALK|Gk|Glk|Glk1 - 11 E2|11 80.91 cM galactokinase 1 protein-coding 18367 Mm.445781 NM_013618 ENSMUSG00000058200 Olfr66 5'[b]1|5'beta1|MOR1-3|ORL532 - 7|7 E3 olfactory receptor 66 protein-coding 434608 LOC434608 - - - 3'-5' exoribonuclease 1-like pseudo 110857 Snrpd-rs2 - - - small nuclear ribonucleoprotein D related sequence 2 protein-coding 100417948 Pou5f1-rs9 Gm18915|Oct4-rs9|Otf3-rs9 - 9|9 A5.2 POU domain, class 5, transcription factor 1, related sequence 9 pseudo 73300 Mm.158984 NM_028496 ENSMUSG00000032894 1700031F05Rik - - X|X D RIKEN cDNA 1700031F05 gene protein-coding 105243992 XR_865682 Gm39688 - - 1 H2.1|1 predicted gene, 39688 ncRNA 100036206 Tapr - - - T cell and airway phenotype regulator unknown 102636866 XR_387551 Gm33819 - - 3 A1|3 predicted gene, 33819 ncRNA 213449 Mm.444635 NM_001163104 ENSMUSG00000073007 Fam46d Gm377 - X|X D family with sequence similarity 46, member D protein-coding 72973 Mm.245939 NM_001081435 ENSMUSG00000070336 Fbxo47 2900052P03Rik|Gm1562 - 11|11 D F-box protein 47 protein-coding 102639875 XR_389327 Gm36084 - - 5 E1|5 predicted gene, 36084 ncRNA 102632601 XR_384144 Gm30632 - - 15 D1|15 predicted gene, 30632 ncRNA 108168979 XR_001784447 LOC108168979 - - 4 D2.2 uncharacterized LOC108168979 ncRNA 116875 Hipp2 Hipp5a - 5 18.4 cM hippocampal weight 2 unknown 67120 Mm.275710 NM_025978 ENSMUSG00000027677 Ttc14 2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980 - 3|3 A3 tetratricopeptide repeat domain 14 protein-coding 620205 Mm.389506 XR_376099 Gm6135 EG620205 - 3|3 G3 prediticted gene 6135 ncRNA 252866 Mm.383288 NM_145745 ENSMUSG00000079058 Adam34 - - 8|8 A4 a disintegrin and metallopeptidase domain 34 protein-coding 108167344 XM_017315674 ENSMUSG00000074863 Gm45951 - - 13 B3|13 predicted gene, 45951 protein-coding 627743 Mm.379363 NM_001104567 ENSMUSG00000091670 Vmn2r105 EG627743 - 17|17 A3.2 vomeronasal 2, receptor 105 protein-coding 100416663 Gm18176 - - X|X predicted gene, 18176 pseudo 27899 D16Ium66 - - 16 36.8 cM DNA segment, Chr 16, Indiana University Medical 66 unknown 71783 Maskbp3 1110004O12Rik|Ankhd1-Eif4ebp3 - 18|18 B2 multiple ankyrin repeats single KH domain binding protein 3 protein-coding 67453 Mm.23896 NM_026165 ENSMUSG00000024259 Slc25a46 1200007B05Rik|AI325987 - 18|18 B1 solute carrier family 25, member 46 protein-coding 242705 Mm.307932 NM_177733 ENSMUSG00000018983 E2f2 E2F-2 - 4|4 D3 E2F transcription factor 2 protein-coding 100034908 Hdlq23 - - 6 23.7 cM HDL QTL 23 unknown 73529 Mm.490924 NR_040727 ENSMUSG00000100487 1700072B07Rik - - 9|9 B RIKEN cDNA 1700072B07 gene ncRNA 319153 Mm.390558 NM_178207 ENSMUSG00000101972 Hist1h3i H3-H - 13|13 A3.1 histone cluster 1, H3i protein-coding 108602 Iap3ra16 - - - intracisternal A-type particle, U3 region, SINE repeat a-16 other 382096 Gm5160 EG382096 - 18|18 A1 peptidylprolyl isomerase A pseudogene chr18_148.1 pseudo 100124590 Vmn2r-ps154 - - Y|Y E vomeronasal 2, receptor, pseudogene 154 pseudo 13267 Del(12)75H Del75H - - deletion, Chr 12, Harwell 75 other 107402 AW742986 - - - expressed sequence AW742986 unknown 100416388 Gm15383 - - 15|15 E3 olfactomedin-like 2A pseudogene pseudo 380993 Mm.309526 NM_198644 ENSMUSG00000022335 Zfat Gm922|Zfat1|Zfp406 - 15|15 D2 zinc finger and AT hook domain containing protein-coding 105242700 Gm38846 - - 6|6 predicted gene, 38846 ncRNA 667148 Gm8482 EG667148 - 12|12 E predicted pseudogene 8482 pseudo 100035000 Espq2 - - - embryo survival preimplantation QTL 2 unknown 74502 5430404G13Rik - - 16|16 RIKEN cDNA 5430404G13 gene protein-coding 110120504 LOC110120504 - - - VISTA enhancer mm1486 biological-region 12418 Mm.268070 NM_007625 ENSMUSG00000039989 Cbx4 MPc2|PC2 - 11 E2|11 83.34 cM chromobox 4 protein-coding 102640264 Gm21895 - - Y|Y predicted gene, 21895 protein-coding 102631787 Gm30035 - - 10|10 predicted gene, 30035 pseudo 102639191 XR_882317 LOC102639191 - - Y A2 uncharacterized LOC102639191 ncRNA 435864 Mm.387745 NM_001104621 ENSMUSG00000091624 Vmn2r9 EG435864 - 5|5 F vomeronasal 2, receptor 9 protein-coding 674190 LOC674190 - - 12|12 Ig heavy chain V region IR2 precursor-like other 674926 Gm9633 - - 13|13 D2.3 ribosomal protein S8 pseudogene pseudo 100040712 XM_006542486 ENSMUSG00000100902 Gm20850 - - Y|Y D predicted gene, 20850 protein-coding 51908 D3Ertd568e - - - DNA segment, Chr 3, ERATO Doi 568, expressed unknown 107368 Mm.27250 NM_001033222 ENSMUSG00000074746 Pdzd8 A630041P07Rik|AV329468|AW228944|Pdzk8 - 19|19 D3 PDZ domain containing 8 protein-coding 105242752 XR_869398 Gm38884 - - 6 F1|6 predicted gene, 38884 ncRNA 109279957 LOC109279957 Mm422 - - VISTA enhancer mm422 biological-region 102640301 Gm38526 - - 2|2 predicted gene, 38526 ncRNA 105243314 XR_879308 Gm39271 Gm45744 - 8 E1|8 predicted gene, 39271 ncRNA 12163 Mm.439749 NM_007558 ENSMUSG00000032726 Bmp8a Bmp7r1|OP-2|OP2 - 4 D2.2|4 57.42 cM bone morphogenetic protein 8a protein-coding 105246701 Gm41948 - - 1|1 predicted gene, 41948 ncRNA 107772 Mclr - - - methylcholanthrene lymphoma resistance protein-coding 105246581 Gm41852 - - 19|19 predicted gene, 41852 ncRNA 240185 Mm.33179 NM_001081963 ENSMUSG00000033960 Jcad 1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462 - 18|18 A1 junctional cadherin 5 associated protein-coding 194854 Mm.296429 NM_001033234 ENSMUSG00000073243 Gm9 - - X|X A3.3 predicted gene 9 protein-coding 108168670 XM_017318881 LOC108168670 - - Y D Y-linked testis-specific protein 1-like protein-coding 69539 Mm.151594 NM_001081156 ENSMUSG00000056596 Trnp1 2300002D11Rik|Trnp - 4|4 D2.3 TMF1-regulated nuclear protein 1 protein-coding 100043447 Gm12337 - - 11|11 B5 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 pseudogene pseudo 109280097 LOC109280097 Mm917 - - VISTA enhancer mm917 biological-region 109242 Mm.370288 NM_024241 ENSMUSG00000028438 Kif24 4933425J19Rik|9430029L23Rik - 4|4 A5 kinesin family member 24 protein-coding 102465775 NR_106136 ENSMUSG00000098879 Mir7675 Gm27965|mmu-mir-7675 - 12|12 A1.1 microRNA 7675 ncRNA 12733 Mm.167900 NM_024412 ENSMUSG00000033770 Clcnka C75963|CLC-K1|Clcnk1 - 4|4 D3 chloride channel, voltage-sensitive Ka protein-coding 100417707 9530050K03Rik - - 12|12 E malate dehydrogenase 1, NAD (soluble) pseudogene pseudo 21338 Mm.103810 NM_021382 ENSMUSG00000028172 Tacr3 Nk3r|Nkr|Tac3r - 3|3 G3 tachykinin receptor 3 protein-coding 112033 Bw17 - - - body weight QTL 17 unknown 100417798 Gm18834 - - 14|14 B predicted gene, 18834 pseudo 62726 D19Mit106 - - 19 20.18 cM DNA segment, Chr 19, Massachusetts Institute of Technology 106 unknown 103609 AA939960 - - - expressed sequence AA939960 unknown 234395 Mm.34874 NM_181418 ENSMUSG00000034911 Ushbp1 2210404N08Rik|9430064H24|AIEBP|MCC2 - 8|8 B3.3 USH1 protein network component harmonin binding protein 1 protein-coding 71982 Mm.294166 NM_028035 ENSMUSG00000038301 Snx10 2410004M09Rik - 6|6 B3 sorting nexin 10 protein-coding 432842 Mm.352566 NR_131973 LOC432842 - - 14|14 B uncharacterized LOC432842 ncRNA 665856 Gm7825 EG665856 - 6|6 D1 ubiquitin-conjugating enzyme E2 variant 1 pseudogene pseudo 666823 Gm8309 EG666823 - 7|7 E1 fusion, derived from t(12;16) malignant liposarcoma pseudogene pseudo 69215 Mm.340410 NM_026991 ENSMUSG00000069835 Sat2 2610016A03Rik|SSAT-2|SSAT2 - 11|11 B3 spermidine/spermine N1-acetyl transferase 2 protein-coding 61238 D1Mit276 - - 1 6.37 cM DNA segment, Chr 1, Massachusetts Institute of Technology 276 unknown 102467486 n-TDgtc15 n-Td15 - 5 G1.1|5 nuclear encoded tRNA aspartic acid 15 (anticodon GTC) tRNA 105449 AA986715 - - - expressed sequence AA986715 protein-coding 320372 A430057L12Rik - - 7|7 RIKEN cDNA A430057L12 gene protein-coding 102637322 LOC102637322 - - 12 D2 eukaryotic translation initiation factor 1A-like pseudo 102636819 XR_381680 Gm33785 - - 12 C3|12 predicted gene, 33785 ncRNA 69829 Mm.390587 2010001K21Rik - - 13|13 A5 RIKEN cDNA 2010001K21 gene unknown 100504618 Gm11579 - - 1|1 30.54 cM predicted gene 11579 ncRNA 100862366 XM_011249882 Gm21678 - - Y A1|Y predicted gene, 21678 protein-coding 102632205 XR_001783606 Gm30345 - - 2 H4|2 predicted gene, 30345 ncRNA 102632129 XR_385626 Gm30283 - - 17 C|17 predicted gene, 30283 ncRNA 102633707 Gm31467 - - 1|1 predicted gene, 31467 protein-coding 108168482 XR_001782840 Gm46687 - - X A1.1|X predicted gene, 46687 ncRNA 27526 B432H10T - - - DNA segment, B432H10T unknown 102639290 XR_381021 Gm11963 - - 11 A1|11 3.6 cM predicted gene 11963 ncRNA 102634362 XR_380517 Gm31962 - - 10 B5.1|10 predicted gene, 31962 ncRNA 107533 Mageb9 mMage-b9 - - melanoma antigen, family B, 9 protein-coding 170707 Mm.218478 NM_130879 ENSMUSG00000043411 Usp48 2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31 - 4|4 D3 ubiquitin specific peptidase 48 protein-coding 102466172 NR_105858 ENSMUSG00000098300 Mir6540 Gm27780|mir-6540|mmu-mir-6540 - 16|16 B4 microRNA 6540 ncRNA 18975 Mm.3616 NM_017462 ENSMUSG00000039176 Polg AA409516|PolgA - 7|7 D2 polymerase (DNA directed), gamma protein-coding 11550 Mm.389380 NM_013460 ENSMUSG00000027335 Adra1d Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR - 2 F1|2 63.5 cM adrenergic receptor, alpha 1d protein-coding 102637563 XR_384709 Gm34340 - - 16 A3|16 predicted gene, 34340 ncRNA 11717 Mm.3238 NM_009667 ENSMUSG00000005686 Ampd3 - - 7 E3|7 57.85 cM adenosine monophosphate deaminase 3 protein-coding 105243384 Gm39320 - - 9|9 predicted gene, 39320 ncRNA 105246591 XR_877902 Gm41861 - - 19 D2|19 predicted gene, 41861 ncRNA 213781 XR_001782298 Gm4786 EG213781 - 17|17 A3.1 predicted gene 4786 pseudo 109280036 LOC109280036 Mm269 - - VISTA enhancer mm269 biological-region 14159 Mm.48757 NM_010194 ENSMUSG00000053158 Fes AI586313|BB137047|FPS|c-fes - 7 D2|7 45.65 cM feline sarcoma oncogene protein-coding 73505 Mm.416867 NR_045733 1700072O05Rik - - 6|6 F1 RIKEN cDNA 1700072O05 gene ncRNA 105246154 XR_876226 Gm41489 - - 16 C3.3|16 predicted gene, 41489 ncRNA 257785 Olfr1236-ps1 EG257785|GA_x5J8B7W62NC-668773-668438|Gm5009 - 2 E1|2 olfactory receptor 1236, pseudogene 1 pseudo 105244694 XR_868173 Gm40256 - - 4 D2.2|4 predicted gene, 40256 ncRNA 23927 Mm.3502 NM_013707 ENSMUSG00000074928 Krtap14 AA589630|Pmg1|mKAP13 - 16|16 C3.3 keratin associated protein 14 protein-coding 14473 Mm.196595 NM_008096 ENSMUSG00000035540 Gc DBP|VDB - 5 E1|5 44.32 cM vitamin D binding protein protein-coding 102637383 Gm34210 - - 9 D|9 predicted gene, 34210 pseudo 237465 Mm.477086 NM_175488 ENSMUSG00000036168 Ccdc38 4933417K05Rik - 10|10 C2 coiled-coil domain containing 38 protein-coding 108167583 XR_001778760 Gm46070 - - 8 D1|8 predicted gene, 46070 ncRNA 23985 Mm.100187 NM_011867 ENSMUSG00000020651 Slc26a4 Pds|pendrin - 12|12 A2 solute carrier family 26, member 4 protein-coding 19175 Mm.98 NM_008946 ENSMUSG00000018286 Psmb6 Lmp19|Mpnd - 11 B3|11 42.99 cM proteasome (prosome, macropain) subunit, beta type 6 protein-coding 100042163 Gm3702 - - 7|7 A1 zinc finger protein 772 pseudogene pseudo 97607 C81369 - - - expressed sequence C81369 unknown 73825 Mm.271817 NM_028658 ENSMUSG00000034709 Ppp1r21 1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1 - 17|17 E4 protein phosphatase 1, regulatory subunit 21 protein-coding 100036501 Skmw18 C57BL/6J and DBA/2JSkmw18 - 13 63.2 cM skeletal muscle weight 18 unknown 102634826 XR_381417 Gm32320 - - 12 A2|12 predicted gene, 32320 ncRNA 19852 Rnu3b-ps1 - - 19|19 3.78 cM U3B small nuclear RNA pseudogene 1 pseudo 69670 2310061D13Rik - - 12|12 RIKEN cDNA 2310061D13 gene protein-coding 72365 Mm.396373 XR_387342 2210011K15Rik - - 1|1 E2.3 RIKEN cDNA 2210011K15 gene ncRNA 14029 Mm.25365 NM_007967 ENSMUSG00000001815 Evx2 Evx-2 - 2 C3|2 44.13 cM even-skipped homeobox 2 protein-coding 259080 Mm.377827 NM_147076 ENSMUSG00000073944 Olfr619 MOR31-5 - 7|7 E3 olfactory receptor 619 protein-coding 67589 4930518J20Rik AV209277 - 1|1 RIKEN cDNA 4930518J20 gene protein-coding 60785 D3Mit42 - - 3 52.94 cM DNA segment, Chr 3, Massachusetts Institute of Technology 42 unknown 15436 Mm.482194 NM_010469 ENSMUSG00000115956 Hoxd4 6030436D05Rik|Hox-4.2|Hox-5.1 - 2 C3|2 44.13 cM homeobox D4 protein-coding 100036325 Mpdk7 - - - modifier of polycystic kidney disease 7 unknown 100036036 Bmc6 - - - bone mineral content 6 unknown 105180387 B230210A14Rik - - - Riken cDNA B230210A14 gene protein-coding 18541 Mm.251794 NM_008787 ENSMUSG00000001151 Pcnt AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp - 10|10 C1 pericentrin (kendrin) protein-coding 60741 D1Mit70 - - 1 12.43 cM DNA segment, Chr 1, Massachusetts Institute of Technology 70 unknown 100113463 Secia5 - - - small effect CIA locus 5 unknown 102636294 Gm33402 - - 1|1 predicted gene, 33402 ncRNA 69259 Mm.28171 NM_027008 ENSMUSG00000016946 Kctd5 2610030N08Rik|mKIAA0176 - 17|17 A3.3 potassium channel tetramerisation domain containing 5 protein-coding 668487 Gm9198 EG668487 - 14|14 D3 ring finger protein 26 pseudogene pseudo 102631609 XR_865498 Gm29906 - - 1 C3|1 predicted gene, 29906 ncRNA 102637075 XR_375165 Gm33977 - - 2 H1|2 predicted gene, 33977 ncRNA 68373 Mm.375116 Gssos1 0610038P03Rik|Gm14256|Gssos2 - 2|2 glutathione synthase, opposite strand 1 protein-coding 384033 Gm12792 - - 4|4 C6 mitogen-activated protein kinase kinase 3 pseudogene pseudo 20132 Mm.278758 NM_009102 ENSMUSG00000028012 Rrh - - 3 G3|3 59.09 cM retinal pigment epithelium derived rhodopsin homolog protein-coding 622901 Gm6368 EG622901 - X|X F2 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 78415 Mm.297760 1700052M18Rik - - 11|11 RIKEN cDNA 1700052M18 gene protein-coding 102642675 Gm38624 - - 18|18 predicted gene, 38624 ncRNA 108169029 XR_001784805 LOC108169029 - - 5 A3 uncharacterized LOC108169029 ncRNA 69602 Mm.101844 NM_027132 ENSMUSG00000018862 Otop3 2310011E08Rik - 11|11 E2 otopetrin 3 protein-coding 21475 Tcra-J - - - T cell receptor alpha, joining region other 105245189 Gm40676 - - 10|10 predicted gene, 40676 ncRNA 192157 Mm.34339 NM_138657 ENSMUSG00000038485 Socs7 2310063P06Rik|C85125|Nap4 - 11|11 D suppressor of cytokine signaling 7 protein-coding 105853 Mm.410994 NM_178920 ENSMUSG00000024479 Mal2 AI461653 - 15|15 D1 mal, T cell differentiation protein 2 protein-coding 73244 Mm.215193 NM_028477 ENSMUSG00000019756 Prl8a1 1600017L04Rik|3830403L08Rik|Ghd16|PLP-Cd|Plpcd|Prlpc4 - 13|13 A3.1 prolactin family 8, subfamily a, member 1 protein-coding 101055744 XM_003945355 Gm29720 - - 2 F2|2 predicted gene, 29720 protein-coding 100416027 Gm17878 - - 13|13 B1 predicted gene, 17878 pseudo 629300 Mm.247258 NR_131148 ENSMUSG00000115699 Gm6961 EG629300 - 15|15 E3 predicted gene 6961 ncRNA 102636350 XR_391550 Gm33442 - - 7 C|7 predicted gene, 33442 ncRNA 105242528 XR_881916 Gm38720 - - 7 A3|7 predicted gene, 38720 ncRNA 16382 Is(7;InX)1Neu Is1Neu - - insertion, Chr 7 piece into inverted Chr X, Neuhauser-Klaus 1 other 12301 Mm.10702 NM_009786 ENSMUSG00000014226 Cacybp SIP - 1|1 H2.1 calcyclin binding protein protein-coding 100043547 Gm4510 - - 10 D3|10 predicted gene 4510 pseudo 111758 Iapls1-4 - - - intracisternal A particle, lymphocyte specific 1-4 other 13026 Mm.98775 NM_009981 ENSMUSG00000005615 Pcyt1a CTalpha|Cctalpha|Ctpct|Cttalpha - 16 B3|16 22.69 cM phosphate cytidylyltransferase 1, choline, alpha isoform protein-coding 258752 Mm.377674 NM_146757 ENSMUSG00000073960 Olfr583 MOR14-6 - 7|7 E3 olfactory receptor 583 protein-coding 100042661 Gm13478 - - 2|2 B ribosomal protein L28 pseudogene pseudo 69091 Mm.218717 NM_178027 ENSMUSG00000031988 Vps26b 1810012I05Rik|2310075A12Rik|AI848392 - 9|9 A4 VPS26 retromer complex component B protein-coding 320764 9930032E11Rik - - 2|2 RIKEN cDNA 9930032E11 gene protein-coding 110787 Iglc3 Igl-C3 - 16 A3|16 11.81 cM immunoglobulin lambda constant 3 other 102632599 LOC102632599 - - 1 A2 RING-box protein 2 pseudogene pseudo 170797 Sez2 - - - seizure related gene 2 protein-coding 330260 Mm.126984 NM_183308 ENSMUSG00000032667 Pon2 6330405I24Rik|AI481612 - 6 A1|6 1.99 cM paraoxonase 2 protein-coding 102636907 XR_869987 LOC102636907 - - 7 F3 putative uncharacterized protein ZNRD1-AS1 homolog protein-coding 66171 Mm.282284 NM_025396 ENSMUSG00000031807 Pgls 1110030K05Rik|AI447866|Plgs - 8 B3.3|8 6-phosphogluconolactonase protein-coding 21023 T(1;7)40H T40H - - reciprocal translocation, Chr 1 and 7, Harwell 40 other 102635170 XR_386685 Gm32574 - - 19 C3|19 predicted gene, 32574 ncRNA 102637130 XM_017318704 Gm21241 - - Y B|Y predicted gene, 21241 protein-coding 100035183 Ath26 - - - atherosclerosis 26 unknown 21744 Mm.8122 NM_009350 ENSMUSG00000027719 Adad1 Tenr - 3|3 B adenosine deaminase domain containing 1 (testis specific) protein-coding 28276 D10Jhu40 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 40 unknown 100416782 Gm18248 - - 1|1 D predicted gene, 18248 pseudo 77445 Mm.461482 9530015I06Rik - - - RIKEN cDNA 9530015I06 gene protein-coding 19621 Rb(8.17)6Sic Rb6Sic - - Robertsonian translocation, Chr 8 and 17, Sicily 6 other 100038927 Mm.426552 NM_001177485 ENSMUSG00000074444 Defa30 Gm15284 - 8 A2|8 defensin, alpha, 30 protein-coding 230579 Mm.222956 NM_146149 ENSMUSG00000034871 Fam151a 2010309H15Rik - 4|4 C7 family with sequence simliarity 151, member A protein-coding 102632197 XR_389113 Gm30337 - - 11 E2|11 predicted gene, 30337 ncRNA 104697 BB122250 - - - expressed sequence BB122250 unknown 114582 Arvm2 - - 4 57.92 cM autoimmune renal vasculitis 2 unknown 20329 sea - - - sepia unknown 102640584 XR_388726 Gm36614 - - 11 B3|11 predicted gene, 36614 ncRNA 27883 Mm.265990 NM_138583 ENSMUSG00000013539 Tango2 D16H22S680E|T10 - 16 A3|16 11.34 cM transport and golgi organization 2 protein-coding 236891 Mageb17-ps EG236891|Mageb17 - X|X C2 melanoma antigen family B, 17, pseudogene protein-coding 436240 Mm.373353 NM_001034894 ENSMUSG00000071665 Foxr2 EG436240|Foxn6 - X|X F3 forkhead box R2 protein-coding 60315 Mm.251638 NM_021713 ENSMUSG00000001285 Myg1 0610023A07Rik|2810433J21Rik|5830429P19Rik|AI325965|Gamm1 - 15|15 F3 melanocyte proliferating gene 1 protein-coding 100861497 NR_046150 ENSMUSG00000095645 n-R5s143 Rn5s26 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 143 rRNA 215819 Mm.297971 NM_173390 ENSMUSG00000039835 Nhsl1 5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357 - 10 A3|10 7.65 cM NHS-like 1 protein-coding 100862449 LOC100862449 - - - H-2 class I histocompatibility antigen, Q10 alpha chain-like pseudo 630424 Gm7033 - - 5|5 G2 predicted gene 7033 pseudo 62512 D11Mit109 - - 11 23.57 cM DNA segment, Chr 11, Massachusetts Institute of Technology 109 unknown 105243657 XR_880372 Gm11775 - - 11 E2|11 84.84 cM predicted gene 11775 ncRNA 21357 Mm.291485 NM_009319 ENSMUSG00000023051 Tarbp2 Prbp|TRBP - 15 F3|15 57.65 cM TARBP2, RISC loading complex RNA binding subunit protein-coding 18317 Mm.246525 NM_010983 ENSMUSG00000070417 Olfr2 I7|MOR103-15|Olfr41 - 7|7 E3 olfactory receptor 2 protein-coding 108168222 Gm28023 - - 15 E1|15 predicted gene, 28023 pseudo 54196 Mm.7723 NM_019402 ENSMUSG00000022194 Pabpn1 PAB2|Pabp3|mPABII - 14 C2|14 27.98 cM poly(A) binding protein, nuclear 1 protein-coding 624549 Mm.116344 NR_131144 ENSMUSG00000109097 Gm29683 Gm44536 - 7|7 C predicted gene, 29683 ncRNA 61014 D5Mit194 - - 5 6.98 cM DNA segment, Chr 5, Massachusetts Institute of Technology 194 unknown 100040073 Gm12193 - - 11|11 B1.2 predicted gene 12193 pseudo 102632106 XR_376496 Gm30266 - - 4 C7|4 predicted gene, 30266 ncRNA 11512 Mm.157091 NM_007405 ENSMUSG00000022994 Adcy6 AC6|mKIAA0422 - 15|15 F1 adenylate cyclase 6 protein-coding 231642 Mm.332593 NM_175016 ENSMUSG00000044339 Alkbh2 9530023G02|AU016977|Abh2|mABH2 - 5|5 F alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase protein-coding 102465899 NR_106190 ENSMUSG00000099078 Mir8110 Gm27571|mmu-mir-8110 - 8|8 C3 microRNA 8110 ncRNA 217695 Mm.59257 NM_183154 ENSMUSG00000042628 Zfyve1 DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589 - 12|12 D1 zinc finger, FYVE domain containing 1 protein-coding 665378 Mm.440912 NM_001081746 Gm7609 EG665378 - 1|1 C5 predicted pseudogene 7609 protein-coding 18422 Mm.420007 NM_011022 ENSMUSG00000094885 Ott AV272316 - X F3|X 68.46 cM ovary testis transcribed protein-coding 108382 Srev6 Srev-6 - - SWR/J-RF/J ecotropic provirus 6 other 258255 Mm.389300 NM_207149 ENSMUSG00000110879 Olfr1010 MOR213-1|MOR213-1_p|MOR213-7P|Olfr1011|Olfr1011-ps1 - 2|2 D olfactory receptor 1010 protein-coding 102467430 n-TGtcc5 n-Tg24 - 1 H3|1 nuclear encoded tRNA glycine 5 (anticodon TCC) tRNA 68818 Mm.32646 NM_026846 ENSMUSG00000026197 Zfand2b 1110060O18Rik|C81256 - 1|1 C4 zinc finger, AN1 type domain 2B protein-coding 102635206 XR_390951 Gm32603 - - 4 E2|4 predicted gene, 32603 ncRNA 108168823 XR_001783595 Gm46781 - - 2 H4|2 predicted gene, 46781 ncRNA 338372 Mm.35284 NM_177395 ENSMUSG00000042724 Map3k9 E130314H24Rik|Mlk1|Prke1 - 12|12 D1 mitogen-activated protein kinase kinase kinase 9 protein-coding 666614 Gm8190 EG666614 - 5|5 F predicted gene 8190 pseudo 100416185 Gm13378 - - 2|2 A3 PHD finger protein 3 pseudogene pseudo 257975 Mm.377320 NM_001011793 ENSMUSG00000073951 Olfr598 MOR23-4P|MOR23-5 - 7|7 E3 olfactory receptor 598 protein-coding 66942 Mm.44219 NM_025860 ENSMUSG00000001674 Ddx18 2310005B10Rik - 1|1 E2.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 protein-coding 207278 Mm.263041 NM_199012 ENSMUSG00000030691 Fchsd2 BC034086|R74866|Sh3md3|mKIAA0769 - 7|7 E2 FCH and double SH3 domains 2 protein-coding 100502610 Mm.483527 Gm19281 - - 13 A5-B|13 26.25 cM predicted gene, 19281 unknown 545826 Gm5873 EG545826 - 6|6 A1 farnesyl diphosphate synthetase pseudogene pseudo 76662 Mm.398319 1700120C18Rik - - 8|8 RIKEN cDNA 1700120C18 gene protein-coding 76014 Mm.241489 NM_001029993 ENSMUSG00000017478 Zc3h18 1190001B23Rik|5830416A07Rik|Nhn1 - 8|8 E1 zinc finger CCCH-type containing 18 protein-coding 105292 AU022746 - - - expressed sequence AU022746 unknown 105244895 XR_872748 Gm40423 - - 12 C1|12 predicted gene, 40423 ncRNA 108298 Mmv1 Mmv-1 - - MCF endogenous virus 1 other 106952 Mm.247642 NM_139206 ENSMUSG00000024451 Arap3 Centd3|Drag1|E030006K04Rik|cnt-d3 - 18|18 B3 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 102633542 Gm11699 - - 11 E2|11 80.55 cM predicted gene 11699 pseudo 76241 Mm.410777 6530401F13Rik - - 12|12 RIKEN cDNA 6530401F13 gene ncRNA 62056 D3Mit370 - - 3 54.68 cM DNA segment, Chr 3, Massachusetts Institute of Technology 370 unknown 100503545 Mm.297364 NM_001195674 ENSMUSG00000061356 Nuggc Gm600|SLIP-GC - 14|14 D1 nuclear GTPase, germinal center associated protein-coding 102636482 XR_390086 Gm33537 - - 17|17 predicted gene, 33537 ncRNA 108150744 LOC108150744 - - - Gm30660 region Hedgehog-responsive enhancer biological-region 26433 Mm.251003 NM_011962 ENSMUSG00000004846 Plod3 AI414586|LH3 - 5 G2|5 76.09 cM procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 protein-coding 624710 Mm.482623 NR_028307 ENSMUSG00000110177 Gm6524 EG624710 - 8|8 A1.1 katanin p60 (ATPase-containing) subunit A1 pseudogene pseudo 100312573 Vmn1r-ps148 - - 17 A3.2|17 vomeronasal 1 receptor, pseudogene 148 pseudo 449000 Mm.483718 NM_001005358 ENSMUSG00000096696 Zfp960 - - 17|17 A3.1 zinc finger protein 960 protein-coding 619864 Vmn2r-ps94 - - 13|13 A3.3 vomeronasal 2, receptor, pseudogene 94 pseudo 19556 Rb(4.18)3H Rb3H - - Robertsonian translocation, Chr 4 and 18, Harwell 3 other 102636416 Gm28090 - - Y|Y predicted gene 28090 pseudo 108167980 XR_001780547 Gm46334 - - 12 A1.1|12 predicted gene, 46334 ncRNA 17622 Ms44 MMS44 - - minisatellites detected by probe MMS44 other 102639772 XR_386272 Gm36003 - - 18 E1|18 predicted gene, 36003 ncRNA 27832 D0Bac2 - - - DNA segment, Bulgarian Academy of Science 2 unknown 492993 Lvic1 - - - liver iron content 1 unknown 100502804 Gm15744 - - 7 D3|7 50.33 cM 40S ribosomal protein S8-like pseudo 100502906 Gm19446 - - 5|5 17.21 cM predicted gene, 19446 ncRNA 85112 D17Mit48 - - 17 5.25 cM DNA segment, Chr 17, Massachusetts Institute of Technology 48 unknown 402766 7030407A21Rik - - 7|7 RIKEN cDNA 7030407A21 gene protein-coding 98156 C81363 - - - expressed sequence C81363 unknown 320665 Mm.446525 D430030G11Rik BB218251 - 19|19 RIKEN cDNA D430030G11 gene unknown 69808 Mm.437203 NR_138594 Rap1gapos 1810058N05Rik - 4|4 D3 RAP1 GTPase activating protein, opposite strand ncRNA 102636910 XR_384073 Gm33852 - - 15 B3.2|15 predicted gene, 33852 ncRNA 383495 Gm5251 EG383495 - 1|1 A3 translation machinery associated 16 pseudogene pseudo 17181 Mm.396856 NM_016762 ENSMUSG00000022324 Matn2 Crtm2|matrilin-2 - 15|15 B3.1 matrilin 2 protein-coding 66513 Mm.288245 NM_025609 ENSMUSG00000022414 Tab1 2310012M03Rik|Map3k7ip1|b2b449Clo - 15|15 E1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 protein-coding 22678 Mm.259230 NM_009550 ENSMUSG00000049321 Zfp2 9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87 - 11 B1.3|11 30.94 cM zinc finger protein 2 protein-coding 13476 Mm.280075 NM_007874 ENSMUSG00000005873 Reep5 AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1 - 18|18 B1 receptor accessory protein 5 protein-coding 492836 Bmd7 - - 4 42.13 cM bone mineral density 7 unknown 14782 Mm.283573 NM_010344 ENSMUSG00000031584 Gsr AI325518|D8Ertd238e|Gr-1|Gr1 - 8 A3|8 20.69 cM glutathione reductase protein-coding 76093 Mm.193688 5830469G19Rik - - 4|4 RIKEN cDNA 5830469G19 gene protein-coding 100035572 Alcdp2 - - - alcohol dependency 2 unknown 103927 Ht - - - hightail unknown 108168947 LOC108168947 - - 4 A5 endogenous retrovirus group K member 25 Pol protein-like pseudo 104362 Mm.2688 NM_008579 ENSMUSG00000026650 Meig1 MLZ-278|Meg1 - 2|2 A1 meiosis expressed gene 1 protein-coding 102633313 Gm11533 - - 11 D|11 60.66 cM predicted gene 11533 pseudo 225852 Mm.301487 NM_001362427 Gm550 - - 19|19 A predicted gene 550 protein-coding 545306 Gm5828 EG545306 - 1|1 A3 TOX high mobility group box family member 4 pseudogene pseudo 108167386 LOC108167386 - - - killer cell lectin-like receptor 3 pseudo 100416955 Gm14887 - - X|X A6 synaptophysin-like protein pseudogene pseudo 102631889 Mm.417728 XR_869756 Gm16638 - - 7 D3|7 47.43 cM predicted gene, 16638 ncRNA 108168049 Mm.426724 XM_017315657 Gm46390 - - 13 D2.3|13 predicted gene, 46390 protein-coding 330963 Mm.379561 XR_870872 ENSMUSG00000066510 Ankdd1a A730067D02|A730067D02Rik|EG330963|Gm1473 - 9|9 C ankyrin repeat and death domain containing 1A protein-coding 61357 D4Mit158 Lynf1 - 4 70.02 cM DNA segment, Chr 4, Massachusetts Institute of Technology 158 unknown 232943 Mm.213403 NM_146182 ENSMUSG00000040714 Klc3 BC017147|Klct - 7 A3|7 9.62 cM kinesin light chain 3 protein-coding 382075 Mm.335177 NM_198673 ENSMUSG00000045620 Odf3l1 BC049697|Gm1116 - 9|9 B outer dense fiber of sperm tails 3-like 1 protein-coding 404447 Olfr939-ps1 - - 9|9 A5.1 olfactory receptor 939, pseudogene 1 pseudo 100503971 Gm3468 - - - predicted gene 3468 protein-coding 258411 Mm.271340 NM_146416 ENSMUSG00000116179 Olfr290 MOR254-1 - 7|7 D3 olfactory receptor 290 protein-coding 100316717 NR_035501 ENSMUSG00000104618 Mir1839 mir-1839|mmu-mir-1839 - 7 D3|7 45.71 cM microRNA 1839 ncRNA 245526 Mm.336164 NM_001033361 ENSMUSG00000031212 Pgr15l - - X|X C3 G protein-coupled receptor 15-like protein-coding 667213 Mm.454429 NR_027964 ENSMUSG00000105044 Gm10416 EG667213 - 5|5 F zinc finger protein pseudogene pseudo 665466 Mm.406980 Gm7644 EG665466 - 14|14 B predicted gene 7644 unknown 105243907 XR_001778883 Gm39627 - - 1 B|1 predicted gene, 39627 ncRNA 76421 Mm.67037 NM_175241 ENSMUSG00000089798 1700028K03Rik - - 5|5 E5 RIKEN cDNA 1700028K03 gene protein-coding 61343 D3Mit219 - - 3 79.45 cM DNA segment, Chr 3, Massachusetts Institute of Technology 219 unknown 100035508 Mfat4 - - - M-line adipose tissue, abdoominal and gonadal fat 4 unknown 102632785 Mm.417726 XR_380668 Gm30769 - - 10 C1|10 predicted gene, 30769 ncRNA 442820 Mm.490725 NR_040657 ENSMUSG00000112707 D830005E20Rik - - 10|10 A4 RIKEN cDNA D830005E20 gene ncRNA 69357 Mm.443312 NM_183280 ENSMUSG00000096153 BC061195 - - X|X C3 cDNA sequence BC061195 pseudo 69554 Mm.234368 NM_027117 ENSMUSG00000020978 Klhdc2 2310022K15Rik|D12Ertd522e|HCLP-1|LCP - 12 C2|12 28.77 cM kelch domain containing 2 protein-coding 100040668 Defa-ps16 Gm15301 - 8 A2|8 defensin, alpha, pseudogene 16 pseudo 546005 Gm5903 EG546005 - 7 F3|7 ring finger and WD repeat domain 3 pseudogene pseudo 71227 Mm.256482 NM_027725 ENSMUSG00000053161 Daw1 4930563E19Rik|4933429D11Rik|Wdr69|b2b1116Clo|b2b1584Clo - 1|1 C5 dynein assembly factor with WDR repeat domains 1 protein-coding 108168383 XR_001782453 Gm46627 - - 18 E1|18 predicted gene, 46627 ncRNA 60826 D4Mit71 - - 4 66.32 cM DNA segment, Chr 4, Massachusetts Institute of Technology 71 unknown 327826 Mm.135965 NM_177798 ENSMUSG00000020170 Frs2 4732458E18|C330018A15Rik|Frs2alpha|SNT1 - 10|10 D2 fibroblast growth factor receptor substrate 2 protein-coding 338355 Mm.357792 NM_001045528 ENSMUSG00000066151 Fkbp15 BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674 - 4|4 B3 FK506 binding protein 15 protein-coding 100040413 Gm10075 - - 1 A3|1 predicted gene 10075 pseudo 20926 Mm.20755 NM_009297 ENSMUSG00000002052 Supt6 5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162 - 11 B5|11 46.74 cM suppressor of Ty 6 protein-coding 404564 AL118389 - - - expressed sequence AL118389 unknown 545762 Mm.425309 NM_001031622 ENSMUSG00000096550 Gm16367 - - - predicted gene 16367 protein-coding 320343 Mm.130607 NM_177139 ENSMUSG00000050447 Lypd6 E130115E03Rik - 2|2 C1.1 LY6/PLAUR domain containing 6 protein-coding 69308 Mm.490882 NR_040554 ENSMUSG00000089730 1700007P06Rik - - 1|1 H5 RIKEN cDNA 1700007P06 gene ncRNA 665578 XR_870489 ENSMUSG00000106824 Gm7697 EG665578 - 8|8 B3.3 predicted gene 7697 protein-coding 19442 Rb(1.18)10Rma Rb10Rma - - Robertsonian translocation, Chr 1 and 18, Universita di Roma 10 other 62989 D18Mit210 - - 18 51.12 cM DNA Segment, Chr 18, Massachusetts Institute of Technology 210 unknown 62706 D17Mit145 - - 17 15.14 cM DNA segment, Chr 17, Massachusetts Institute of Technology 145 unknown 320967 Mm.438112 B930046M08Rik - - 10|10 RIKEN cDNA B930046M08 gene ncRNA 641088 LOC641088 - - - Ig heavy chain V region RF precursor-like other 100046119 Mcg1038069 - - 12|12 ubiquitin-conjugating enzyme E2 N-like protein-coding 62695 D17Mit119 - - 17 38.15 cM DNA segment, Chr 17, Massachusetts Institute of Technology 119 unknown 102638072 XR_387590 Gm34722 - - 5 F|5 predicted gene, 34722 ncRNA 27981 Mm.331964 NM_023665 ENSMUSG00000037266 Rsrp1 2700043I21Rik|D4Ucla2|D4Wsu53e - 4 D3|4 67.15 cM arginine/serine rich protein 1 protein-coding 102638805 XR_388600 Gm35282 - - 11 B1.1|11 predicted gene, 35282 ncRNA 193587 Trav8-2 Gm14031|Gm1799|Gm27 - 14 C2|14 T-cell receptor alpha variable 8-2 other 105243075 Gm39104 - - 7|7 predicted gene, 39104 ncRNA 69339 Mm.422869 NM_027046 ENSMUSG00000050685 Ccdc54 1700007N18Rik|AI644412|BB013989|NYD-SP17 - 16|16 B5 coiled-coil domain containing 54 protein-coding 74318 Mm.181852 NM_175606 ENSMUSG00000059325 Hopx 1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto - 5|5 C3.3 HOP homeobox protein-coding 67864 Mm.41891 NM_026417 ENSMUSG00000024072 Yipf4 2310034L04Rik - 17|17 E2 Yip1 domain family, member 4 protein-coding 493126 Dmyaq2 - - 1 38.01 cM darker modification of yellow agouti QTL 2 unknown 109641 Ps - - - polysyndactyly unknown 100416188 Gm13818 - - 2|2 E1 ribosomal protein S2 pseudogene pseudo 108167629 XR_001779009 ENSMUSG00000100562 LOC108167629 - - 1 C4 uncharacterized LOC108167629 ncRNA 11998 Mm.6190 NM_009732 ENSMUSG00000037727 Avp Vp|Vsp - 2 F1|2 63.24 cM arginine vasopressin protein-coding 102636633 XR_379504 Gm33643 - - 9 B|9 predicted gene, 33643 ncRNA 270014 Stk29 - - 7|7 F5 serine/threonine kinase 29 protein-coding 105245633 XR_873961 Gm41061 - - 13 D2.2|13 predicted gene, 41061 ncRNA 433424 Mm.441408 NR_110571 ENSMUSG00000052248 Zeb2os Gm13476|Zeb2nat - 2|2 B zinc finger E-box binding homeobox 2, opposite strand ncRNA 380780 Mm.201338 NM_199314 ENSMUSG00000063232 Serpina11 Gm895 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11 protein-coding 105242716 XR_869249 Gm38859 - - 6 D1|6 predicted gene, 38859 ncRNA 114167 Etohcta1 - - - ethanol conditioned taste aversion 1 unknown 100124 Mm.399624 AI448984 - - - expressed sequence AI448984 protein-coding 105243050 XR_869925 Gm39084 - - 7 F2|7 predicted gene, 39084 ncRNA 56292 Mm.246654 NM_019870 ENSMUSG00000031388 Naa10 2310039H09Rik|Ard1|Ard1a|Te2 - X|X A7.3 N(alpha)-acetyltransferase 10, NatA catalytic subunit protein-coding 102636586 Gm33608 - - 15|15 predicted gene, 33608 ncRNA 100038549 Gm10779 - - - predicted gene 10779 protein-coding 100042740 Rpl31-ps9 Gm10191 - 1|1 E4 ribosomal protein L31, pseudogene 9 pseudo 170722 Mm.103373 NM_130888 ENSMUSG00000031410 Nxf7 Nx7|Nxf6|nfx-a1|nxf-a|nxf-a2 - X F1|X 57.25 cM nuclear RNA export factor 7 protein-coding 13399 dm - - - diminutive unknown 100270707 Mm.117112 NR_026741 ENSMUSG00000087252 Gm14379 - - X|X A1.1 predicted gene 14379 ncRNA 140580 Mm.342392 NM_080288 ENSMUSG00000041112 Elmo1 6330578D22Rik|C230095H21Rik|CED-12 - 13|13 A2 engulfment and cell motility 1 protein-coding 61761 D4Mit229 - - 4 26.0 cM DNA segment, Chr 4, Massachusetts Institute of Technology 229 unknown 108511956 Hebp1r2 - - 6 G1 Hebp1R2 erythroid cis-regulatory module biological-region 665000 Gm7441 EG665000 - 13|13 A1 predicted gene 7441 pseudo 227526 Mm.211455 NM_177647 ENSMUSG00000039496 Cdnf 9330140G23|Armetl1 - 2|2 A1 cerebral dopamine neurotrophic factor protein-coding 102636530 XM_006516435 LOC102636530 - - 12 D2 ubiquitin-like protein 5 protein-coding 28160 DYzEms14 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 14 unknown 670074 Gm14773 - - X|X C1 predicted gene 14773 protein-coding 66399 Mm.29900 NM_025537 ENSMUSG00000040521 Tsfm 2310050B20Rik|9430024O13Rik|EF-TS|EF-Tsmt - 10|10 D3 Ts translation elongation factor, mitochondrial protein-coding 108444576 LOC108444576 - - - Nr0b1 5' regulatory region biological-region 98823 Mm.365561 AA763515 - - - expressed sequence AA763515 protein-coding 493002 Nidd7k - - - Nidd7 on KK-A unknown 100034999 Pltct2 - - 11 51.88 cM platelet count 2 unknown 171265 Mm.377217 NM_134231 ENSMUSG00000091924 Vmn1r185 V1re12 - 7|7 A3 vomeronasal 1 receptor 185 protein-coding 493097 Lipq1 - - 6 77.7 cM lipoprotein QTL 1 unknown 574519 Mm.487605 NR_002871 ENSMUSG00000085794 Vax2os Vas2os|Vax2os1|Vax2os2 - 6|6 C3 ventral anterior homeobox 2, opposite strand ncRNA 100040807 XR_001781342 Gm2977 - - 14 A1|14 predicted gene 2977 protein-coding 111896 Iap5rc5 - - - intracisternal A-type particle, U5 region, SINE repeat c-5 other 100124486 NR_030566 ENSMUSG00000077972 Mir466f-1 Mirn466f-1 - 2 A1|2 microRNA 466f-1 ncRNA 102641028 Mm.30921 XM_006523195 LOC102641028 - - - uncharacterized LOC102641028 protein-coding 676077 Gm14613 - - X|X A4 predicted gene 14613 pseudo 56226 Mm.264215 NM_019585 ENSMUSG00000028943 Espn je - 4 E2|4 82.9 cM espin protein-coding 100502689 Gm11218 - - 4 C1|4 34.06 cM alpha-enolase-like pseudo 227358 Mm.389157 NM_173395 ENSMUSG00000047443 Erfe 4832406C22|Fam132b|myonectin - 1|1 D erythroferrone protein-coding 667859 Igkv8-18 Igk-V8-18 - 6|6 C1 immunoglobulin kappa variable 8-18 other 100862371 XM_017318837 Gm21683 - - Y D|Y predicted gene, 21683 protein-coding 18291 Mm.17715 NM_130869 ENSMUSG00000029736 Nobox OG2|Og2x - 6 B2.1|6 21.17 cM NOBOX oogenesis homeobox protein-coding 97307 C80581 - - - expressed sequence C80581 unknown 665431 Gm7633 EG665431 - 14 A3|14 ribosomal protein S7 pseudogene pseudo 102631495 Gm16326 - - 7 F2|7 65.47 cM predicted gene 16326 pseudo 216439 Mm.336761 NM_001033263 ENSMUSG00000025422 Agap2 AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167 - 10|10 D3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 protein-coding 104438 Cfp3 - - - cerebellar folial pattern 3 protein-coding 751541 NR_030459 ENSMUSG00000076121 Mir687 Mirn687|mir-687|mmu-mir-687 - 14 D3|14 microRNA 687 ncRNA 102632637 Gm30661 - - 6|6 predicted gene, 30661 ncRNA 544716 Ap3m1-ps D10Ertd567e|EG544716 - 10 C1|10 39.72 cM adaptor-related protein complex 3, mu 1 subunit, pseudogene pseudo 100101634 Moen3 - - - modifier of engrailed QTL 3 unknown 100459 Mm.272098 AW743301 - - - expressed sequence AW743301 unknown 114807 Bwtq3 - - - body weight QTL 3 unknown 53972 Mm.435439 NM_019867 ENSMUSG00000026259 Ngef Tims2|ephexin - 1 D|1 44.42 cM neuronal guanine nucleotide exchange factor protein-coding 105243606 Gm39475 - - 11|11 predicted gene, 39475 ncRNA 105518 Mm.246608 NM_001251843 ENSMUSG00000095493 A630023A22Rik AI461879 - 14 B|14 RIKEN cDNA A630023A22 gene protein-coding 102637456 XR_385135 Gm34259 - - 17 A1|17 predicted gene, 34259 ncRNA 93739 Mm.371666 NM_026693 ENSMUSG00000031950 Gabarapl2 0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2 - 8|8 E1 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2 protein-coding 385291 Igkv4-54 Gm1530|ar4|ko4 - 6|6 C1 immunoglobulin kappa chain variable 4-54 other 105244538 XR_867588 Gm40131 - - 3 G1|3 predicted gene, 40131 ncRNA 75927 Mm.410803 NR_045369 ENSMUSG00000090220 Pitpnm2os1 4930568K20Rik - 5|5 F phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 1 ncRNA 102639010 XR_374742 Gm35431 - - 2 C3|2 predicted gene, 35431 ncRNA 257630 Mm.222807 NM_145856 ENSMUSG00000041872 Il17f C87042|IL-17F - 1|1 A4 interleukin 17F protein-coding 102639766 XR_389325 Gm35999 - - 5 E1|5 predicted gene, 35999 ncRNA 12708 Ck-ps3 Ck4 - 16|16 B4 creatine kinase pseudogene 3 pseudo 62760 D17Mit181 - - 17 29.74 cM DNA segment, Chr 17, Massachusetts Institute of Technology 181 unknown 102631908 Gm15030 - - X A2|X 17.0 cM predicted gene 15030 pseudo 61713 D5Mit312 - - 5 47.29 cM DNA segment, Chr 5, Massachusetts Institute of Technology 312 unknown 102638997 XR_384321 Gm35422 - - 15 E3|15 predicted gene, 35422 ncRNA 69785 Mm.46086 NM_027210 ENSMUSG00000057195 Ceacam13 1600012K03Rik|1600025J19Rik - 7|7 A2 carcinoembryonic antigen-related cell adhesion molecule 13 protein-coding 280635 Mm.330747 NM_182840 ENSMUSG00000050700 Emilin3 1110013O17Rik|EMILIN-3|EMILIN-5|EMILIN-T|Emilin5 - 2|2 H2 elastin microfibril interfacer 3 protein-coding 70945 Mm.389770 NM_027613 ENSMUSG00000054641 Mmrn1 4921530G03Rik|Emilin4|Mmrn - 6 B3|6 29.22 cM multimerin 1 protein-coding 106969 AU014988 - - - expressed sequence AU014988 unknown 100504641 Mm.398286 NR_045270 ENSMUSG00000097675 1700101I11Rik - - 6|6 F3 RIKEN cDNA 1700101I11 gene ncRNA 102638873 XR_387262 Gm35332 - - 1 D|1 predicted gene, 35332 ncRNA 56697 Mm.274404 NM_019921 ENSMUSG00000047804 Akap10 1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10 - 11|11 B2 A kinase (PRKA) anchor protein 10 protein-coding 105246673 XR_878425 Gm41925 - - 1 E2.1|1 predicted gene, 41925 ncRNA 667088 Gm8449 EG667088 - 9|9 E3.3 RNA (guanine-9-) methyltransferase domain containing 2 pseudogene pseudo 105980075 Mm.201322 NR_132310 Gm20716 Dpm1-adnp - 2 H3|2 88.41 cM predicted gene 20716 ncRNA 11889 Mm.6559 NM_009714 ENSMUSG00000020884 Asgr1 ASGPR1|Asgr|Asgr-1|HL-1 - 11 B3|11 42.98 cM asialoglycoprotein receptor 1 protein-coding 381967 Mm.261763 NR_103487 ENSMUSG00000097015 Gm26705 - - 7|7 E1 predicted gene, 26705 ncRNA 108168183 XR_001781407 Gm46473 - - 14 D3|14 predicted gene, 46473 ncRNA 12990 Mm.427467 NM_007784 ENSMUSG00000070702 Csn1s1 AA959832|AW212882|Csna - 5 E1|5 43.56 cM casein alpha s1 protein-coding 100306935 Gm14676 - - X|X A7.1 lactate dehydrogenase A pseudogene pseudo 110025 Rrsv Rrs - - resistance to Rous sarcoma protein-coding 100502782 Gm19368 - - 12|12 8.16 cM predicted gene, 19368 pseudo 113862 Mm.431976 NM_053235 ENSMUSG00000064259 Vmn1r13 V1rc5 - 6|6 B3 vomeronasal 1 receptor 13 protein-coding 492914 Nidd4k - - - Nidd4 on KK-A unknown 100977 D5Mgi13 AW537030 - - DNA Segment, Chr 5, Mouse Genome Informatics 13 unknown 492842 Hrec - - 2 65.46 cM hemotopoietic response to early cytokines unknown 224613 Mm.328835 NM_153791 ENSMUSG00000040097 Flywch1 E030034P13Rik|mKIAA1552 - 17|17 A3.3 FLYWCH-type zinc finger 1 protein-coding 102640614 Gm29212 - - Y|Y predicted gene 29212 ncRNA 111597 Pmv55 Pmv-55 - - polytropic murine leukemia virus 55 other 259113 Mm.377854 NM_147109 ENSMUSG00000043354 Olfr577 MOR7-2 - 7|7 E3 olfactory receptor 577 protein-coding 11641 Mm.467752 NM_009649 ENSMUSG00000038729 Akap2 AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2 - 4|4 B3 A kinase (PRKA) anchor protein 2 protein-coding 666279 Mm.319832 NM_010080 ENSMUSG00000053268 Dspp Dmp2|Dmp3|Dpp|Dsp - 5 E5|5 50.59 cM dentin sialophosphoprotein protein-coding 108167879 XR_001780154 Gm46266 - - 11 A1|11 predicted gene, 46266 ncRNA 100035459 Vmmt15 - - - vertebral morphology and mechanical traits 15 unknown 66272 Mm.439970 NM_025461 ENSMUSG00000091803 Cox16 1810020G14Rik|1810055I05Rik|BB388670 - 12|12 D1 cytochrome c oxidase assembly protein 16 protein-coding 66269 Mm.23032 NM_025458 ENSMUSG00000031919 Tmed6 1810015P03Rik|1810018I24Rik - 8|8 D3 transmembrane p24 trafficking protein 6 protein-coding 102634756 XR_878203 Gm32262 - - X D|X predicted gene, 32262 ncRNA 102637586 Gm34357 - - 6|6 predicted gene, 34357 ncRNA 230979 Mm.215147 NM_178931 ENSMUSG00000042333 Tnfrsf14 Atar|HveA|Hvem|Tnfrs14 - 4|4 E2 tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator) protein-coding 102637957 XR_873433 Gm34640 - - 13 B1|13 predicted gene, 34640 ncRNA 114606 Mm.206764 NM_053254 ENSMUSG00000034758 Tle6 1810057E06Rik|Grg6 - 10|10 C1 transducin-like enhancer of split 6 protein-coding 68673 Mm.351893 NM_026807 ENSMUSG00000044649 Krtap4-2 1110033F04Rik|AI604442 - 11|11 D keratin associated protein 4-2 protein-coding 319919 A230006I23Rik - - 4|4 RIKEN cDNA A230006I23 gene protein-coding 71803 Mm.425340 NM_001081048 ENSMUSG00000004902 Slc25a18 1500015I14Rik|AW125787 - 6 F1|6 57.0 cM solute carrier family 25 (mitochondrial carrier), member 18 protein-coding 102634623 XR_383545 Gm32162 - - 14 D2|14 predicted gene, 32162 ncRNA 62883 D11Mit231 - - 11 21.92 cM DNA segment, Chr 11, Massachusetts Institute of Technology 231 unknown 69737 Mm.33909 NM_027192 ENSMUSG00000027394 Ttl 2410003M22Rik|2700049H19Rik|AI848570 - 2|2 F1 tubulin tyrosine ligase protein-coding 105245903 XR_875095 Gm41283 - - 15 B2|15 predicted gene, 41283 ncRNA 21059 T(11;13)56H T56H - - reciprocal translocation, Chr 11 and 13, Harwell 56 other 105242841 Gm38938 - - 11|11 predicted gene, 38938 ncRNA 62919 D10Mit250 - - 10 14.07 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 250 unknown 11906 Mm.416972 NM_007496 ENSMUSG00000038872 Zfhx3 A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228 - 8|8 D3 zinc finger homeobox 3 protein-coding 319922 Mm.337851 NM_177033 ENSMUSG00000050830 Vwc2 A930041G11Rik|G11|PSST739|UNQ739|cradin - 11|11 A1 von Willebrand factor C domain containing 2 protein-coding 65115 Mm.41849 NM_001141922 ENSMUSG00000031872 Bean1 Bean - 8 D3|8 brain expressed, associated with Nedd4, 1 protein-coding 258173 NM_001011542 ENSMUSG00000073899 Olfr1532-ps1 GA_x6K02T2PBJ9-9297671-9298594|MOR260-6P|MOR260-9P|Olfr708 - 7|7 E3 olfactory receptor 1532, pseudogene 1 protein-coding 319508 Mm.228006 NM_176931 ENSMUSG00000041479 Syt15 CHR10SYT|E230025K04Rik|sytXV - 14|14 B synaptotagmin XV protein-coding 622236 Rpl27-ps1 EG622236|Gm6301 - 1|1 H3 ribosomal protein L27, pseudogene 1 pseudo 12442 Mm.22592 NM_007630 ENSMUSG00000032218 Ccnb2 CycB2 - 9|9 D cyclin B2 protein-coding 105244550 XR_867619 Gm40143 - - 3 G1|3 predicted gene, 40143 ncRNA 62069 D10Mit46 - - 10 64.71 cM DNA segment, Chr 10, Massachusetts Institute of Technology 46 unknown 105245414 XR_872634 Gm40873 - - 12 A2|12 predicted gene, 40873 ncRNA 70086 Mm.158324 NM_133720 ENSMUSG00000033470 Cysltr2 2300001H05Rik|CYSLT2R|Cltr2|Cyslt2 - 14|14 D3 cysteinyl leukotriene receptor 2 protein-coding 16784 Mm.486 NM_010685 ENSMUSG00000016534 Lamp2 CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3 - X A3.3|X 22.67 cM lysosomal-associated membrane protein 2 protein-coding 22217 Mm.167971 NM_011669 ENSMUSG00000029640 Usp12 Ubh1 - 5|5 G3 ubiquitin specific peptidase 12 protein-coding 100046305 Gm17772 - - 14|14 C2 developmental pluripotency-associated protein 5A-like pseudo 102638154 Gm21856 - - Y|Y predicted gene, 21856 protein-coding 102635826 XR_381902 Gm16086 - - 12 F1|12 57.81 cM predicted gene 16086 ncRNA 672977 Gm9587 - - 14|14 C1 predicted gene 9587 pseudo 18476 Mm.597 NM_008776 ENSMUSG00000005447 Pafah1b3 Pafahg|mus[g] - 7|7 A3 platelet-activating factor acetylhydrolase, isoform 1b, subunit 3 protein-coding 102632771 Gm30758 - - 5|5 predicted gene, 30758 ncRNA 105243376 XR_870628 Gm39318 - - 9 A4|9 predicted gene, 39318 ncRNA 16724 l17Wis6 l(17)-6Wis - - lethal, Chr 17, U Wisconsin 6 unknown 229330 Gm4856 EG229330 - 3|3 D predicted gene 4856 pseudo 100503450 Gm13720 - - 2|2 49.68 cM predicted gene 13720 pseudo 257917 Mm.377302 NM_001011760 ENSMUSG00000059504 Olfr314 MOR278-2 - 11|11 B1.3 olfactory receptor 314 protein-coding 112208 Ity3 - - 1 56.92 cM immunity to S. typhimurium 3 unknown 244810 Mm.208855 NM_178737 ENSMUSG00000038112 AW551984 3222402N16 - 9|9 A5.1 expressed sequence AW551984 protein-coding 105245895 XR_875051 ENSMUSG00000115614 Gm41276 - - 15 A1|15 predicted gene, 41276 ncRNA 258985 Mm.223374 NM_146983 ENSMUSG00000075073 Olfr1256 MOR231-1 - 2|2 E1 olfactory receptor 1256 protein-coding 100504601 Mm.365131 NR_045795 ENSMUSG00000097796 Gm16702 AU016609 - 17 A1|17 4.92 cM predicted gene, 16702 ncRNA 74023 Mm.274393 NM_023727 ENSMUSG00000049353 Rd3 3322402L07Rik|rd-3|rd3 - 1 H6|1 97.09 cM retinal degeneration 3 protein-coding 102638006 Gm14372 - - 7|7 88.78 cM predicted gene 14372 ncRNA 207136 Bbaa15 Bb15 - - B.burgdorferi-associated arthritis 15 unknown 102634265 XR_387951 Gm31892 - - 8 D1|8 predicted gene, 31892 ncRNA 100039277 Gm14904 - - X E1|X predicted gene 14904 pseudo 69747 Mm.141150 NM_027198 ENSMUSG00000014243 Zswim7 2410012H22Rik - 11|11 B2 zinc finger SWIM-type containing 7 protein-coding 102636930 Gm33868 - - 7|7 predicted gene, 33868 ncRNA 102639409 Gm15461 - - 5|5 16.9 cM predicted gene 15461 ncRNA 100417399 Pex13-ps Gm13638 - 2|2 C3 peroxisomal biogenesis factor 13, pseudogene pseudo 114646 Pkccl - - 11 71.83 cM protein kinase C content in lungs unknown 100417819 Gm14612 - - X|X A5 sprouty-related, EVH1 domain containing 2 pseudogene pseudo 110478 Tcra-V5.4 - - - T cell receptor alpha, variable 5.4 other 257933 Mm.376114 NM_001011771 ENSMUSG00000111711 Olfr1089 MOR193-1 - 2|2 D olfactory receptor 1089 protein-coding 100042966 Mm.431911 NR_030707 Vmn1r-ps79 Gm652 - 7|7 A3 vomeronasal 1 receptor, pseudogene 79 pseudo 15159 Mm.284033 NM_008222 ENSMUSG00000031352 Hccs - - X|X F5 holocytochrome c synthetase protein-coding 100417890 Gm18884 - - 14|14 B BRCA1/BRCA2-containing complex, subunit 3 pseudogene pseudo 62907 D10Mit207 - - 10 39.72 cM DNA segment, Chr 10, Massachusetts Institute of Technology 207 unknown 19272 Mm.332303 NM_008983 ENSMUSG00000019889 Ptprk AI853699|PTPk|RPTPkappa - 10 A4|10 15.06 cM protein tyrosine phosphatase, receptor type, K protein-coding 100526539 NR_037267 ENSMUSG00000096894 Mir467a-10 mmu-mir-467a-10 - 2 A1|2 8.22 cM microRNA 467a-10 ncRNA 102632788 Gm12040 - - 11 A3.1|11 13.88 cM predicted gene 12040 pseudo 102633442 Gm31266 - - 3|3 predicted gene, 31266 ncRNA 622568 Gm6334 EG622568 - 8|8 A1.1 protein kinase inhibitor, gamma pseudogene pseudo 208922 Mm.391176 NM_198300 ENSMUSG00000039652 Cpeb3 4831444O18Rik|CPE-BP3|mKIAA0940 - 19|19 C2 cytoplasmic polyadenylation element binding protein 3 protein-coding 102633597 Gm31383 - - 7|7 predicted gene, 31383 ncRNA 75347 Mm.207324 NR_126454 ENSMUSG00000107656 4930563H07Rik - - 6|6 B2.3 RIKEN cDNA 4930563H07 gene ncRNA 77465 Mm.288698 C030027H14Rik AI836126 - 10|10 RIKEN cDNA C030027H14 gene protein-coding 111308 Hmgn1-rs10 Hmg14-rs10 - - high mobility group nucleosomal binding domain 1, related sequence 10 pseudo 260298 Mm.150496 NM_153111 ENSMUSG00000055197 Fev Pet-1|Pet1|mPet-1 - 1|1 C4 FEV (ETS oncogene family) protein-coding 327885 Mm.30811 C030046G05 - - 11|11 A3.2 uncharacterized protein C030046G05 protein-coding 102639452 LOC102639452 - - 1 G1 heat shock 70 kDa protein 14-like pseudo 102638149 Gm34783 - - 7 C|7 predicted gene, 34783 pseudo 100417867 Gm14774 - - X|X C1 predicted gene 14774 pseudo 102631644 XR_378582 Gm29931 - - 7 F3|7 predicted gene, 29931 ncRNA 723814 NR_029801 ENSMUSG00000076066 Mir223 Mirn223|miR-223|mmu-mir-223 - X|X C3 microRNA 223 ncRNA 100462960 Mrps36-ps3 Gm19255|Mrps36-ps - 7 A1|7 8.18 cM mitochondrial ribosomal protein S36, pseudogene 3 pseudo 232867 Gm17737 - - 7|7 A1 zinc finger and SCAN domain containing 4, pseudogene 2 pseudogene pseudo 235493 Mm.208955 NM_153584 ENSMUSG00000034858 Fam214a 6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370 - 9|9 D family with sequence similarity 214, member A protein-coding 52414 D2Ertd742e - - 2 14.54 cM DNA segment, Chr 2, ERATO Doi 742, expressed unknown 103199 Mm.277242 NM_133999 ENSMUSG00000038417 Fig4 A530089I17Rik|AI326867|Sac3 - 10|10 B1 FIG4 phosphoinositide 5-phosphatase protein-coding 71924 Mm.297956 NM_028006 ENSMUSG00000019845 Tube1 2310061K05Rik|AI551343|Tube - 10|10 B1 epsilon-tubulin 1 protein-coding 100417242 Gm18478 - - 11|11 A1 ribosomal protein, large, P0 pseudogene pseudo 105245166 XR_873105 Gm40657 - - 13 A1|13 predicted gene, 40657 ncRNA 105245992 XR_875481 Gm41359 - - 15 E1|15 predicted gene, 41359 ncRNA 18709 Mm.12945 NM_008841 ENSMUSG00000031834 Pik3r2 p85beta - 8 B3.3|8 34.15 cM phosphoinositide-3-kinase regulatory subunit 2 protein-coding 102635237 XR_374796 Gm32627 - - 2 E1|2 predicted gene, 32627 ncRNA 102633160 XR_380807 Gm31058 - - 10 D2|10 predicted gene, 31058 ncRNA 105243095 XR_870064 Gm15579 - - 7 F5|7 88.26 cM predicted gene 15579 ncRNA 22095 Mm.173847 NM_011648 ENSMUSG00000020963 Tshr AI481368|hypothroid|hyt|pet - 12 D3|12 44.51 cM thyroid stimulating hormone receptor protein-coding 492829 Bmd11 - - 11 39.47 cM bone mineral density 11 unknown 20217 sal - - - satin-like unknown 109279892 LOC109279892 Mm62 - - VISTA enhancer mm62 biological-region 102632909 Gm28843 - - Y|Y predicted gene 28843 protein-coding 81879 Mm.24621 NM_023755 ENSMUSG00000026380 Tfcp2l1 1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1 - 1|1 E2.3 transcription factor CP2-like 1 protein-coding 98231 Mm.385460 AA675035 - - - expressed sequence AA675035 unknown 100124665 Trbv9 - - 6|6 B1 T cell receptor beta variable 9 pseudo 107424 Ylr - - - Y-linked B cell surface antigen protein-coding 100043665 Mm.335671 NM_001201364 ENSMUSG00000095683 Gm10662 - - 7|7 A3 predicted gene 10662 protein-coding 723878 NR_030269 ENSMUSG00000070141 Mir494 Mirn494|mir-494|mmu-mir-494 - 12 F1|12 microRNA 494 ncRNA 16051 Mm.259174 Igh-V11 - - 12 F1|12 immunoglobulin heavy chain (V11 family) other 102636569 Mm.389377 XR_374816 Gm13794 - - 2 E1|2 52.02 cM predicted gene 13794 ncRNA 111759 Iapls1-7 - - - intracisternal A particle, lymphocyte specific 1-7 other 100040678 Gm15309 - - 8|8 A2 ribosomal protein L21 pseudogene pseudo 62278 D19Mit38 - - - DNA segment, Chr 19, Massachusetts Institute of Technology 38 unknown 214917 Mm.26783 NM_145410 ENSMUSG00000057411 Fam173a - - 17|17 A3.3 family with sequence similarity 173, member A protein-coding 102633178 Gm31070 - - 19 A|19 predicted gene, 31070 pseudo 100043569 Mm.480299 NM_001166847 ENSMUSG00000094284 Vmn1r112 EG667283|Gm16444 - 7|7 A3 vomeronasal 1 receptor 112 protein-coding 108167824 XR_001779823 Gm46237 - - 10 C1|10 predicted gene, 46237 ncRNA 110504 Tcra-V1.2 - - - T cell receptor alpha, variable 1.2 other 20872 Mm.1155 NM_011494 ENSMUSG00000026201 Stk16 EDPK|Krct|MPSK|PKL12|TSF-1 - 1|1 C4 serine/threonine kinase 16 protein-coding 70025 Mm.296191 NM_133348 ENSMUSG00000028937 Acot7 2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1 - 4|4 E2 acyl-CoA thioesterase 7 protein-coding 12469 Mm.328673 NM_009840 ENSMUSG00000025613 Cct8 AI132397|Cctq|Tcpq - 16|16 C3.3 chaperonin containing Tcp1, subunit 8 (theta) protein-coding 170806 Cdcs5 - - - cytokine deficiency colitis susceptibility 5 unknown 258267 Mm.377401 NM_146270 ENSMUSG00000047286 Olfr370 MOR267-16|MOR26716 - 8|8 C2 olfactory receptor 370 protein-coding 105243684 XR_878112 Gm39514 - - X A6|X predicted gene, 39514 ncRNA 664909 Gm7400 EG664909 - 18|18 A1 carbohydrate sulfotransferase 10 pseudogene pseudo 108560 Iapls2-17 - - - intracisternal A particle, lymphocyte specific 2-17 other 105243037 XR_869891 Gm39074 - - 7 F1|7 predicted gene, 39074 ncRNA 11931 Mm.4550 NM_009721 ENSMUSG00000026576 Atp1b1 Atp4b|Atpb|Atpb-1|NKbeta1 - 1 H2.2|1 71.75 cM ATPase, Na+/K+ transporting, beta 1 polypeptide protein-coding 230863 Mm.482408 NM_001099631 ENSMUSG00000045349 Sh2d5 BC036961 - 4|4 D3 SH2 domain containing 5 protein-coding 105246697 Gm41944 - - 1|1 predicted gene, 41944 ncRNA 100035428 Brwt1 - - - brain weight 1 unknown 100035889 Nsila8 - - 11 79.65 cM novelty/stress induced locomotor activation 8 unknown 100862381 Mm.472987 Gm21691 - - 16|16 predicted gene, 21691 ncRNA 105244141 Gm39808 - - 2|2 predicted gene, 39808 ncRNA 108167563 XR_001778720 Gm46061 - - 8 E2|8 predicted gene, 46061 ncRNA 102632355 Gm30449 - - 10|10 predicted gene, 30449 ncRNA 109666 Skn2 Sk-2|Skn-2 - - skin antigen 2 protein-coding 102636815 LOC102636815 - - 11 A1 elongation factor 2 pseudogene pseudo 54609 Mm.430772 NM_018798 ENSMUSG00000050148 Ubqln2 Chap1|Dsk2|HRIHFB2157|Plic-2|Plic2 - X|X F3 ubiquilin 2 protein-coding 75442 Mm.417853 1700008N11Rik - - 8|8 RIKEN cDNA 1700008N11 gene protein-coding 100579137 NR_102372 ENSMUSG00000104600 Dmrt1i Dmr - 5 G2|5 Dmrt1 interacting ncRNA ncRNA 111064 Msh6-rs Gtmbp-rs - - mutS homolog 6 (E. coli), related sequence pseudo 102640119 XR_382038 Gm36264 - - 13 A1|13 predicted gene, 36264 ncRNA 69716 Mm.275095 NM_027182 ENSMUSG00000021569 Trip13 2410002G23Rik|D13Ertd328e - 13 C1|13 40.15 cM thyroid hormone receptor interactor 13 protein-coding 22234 Mm.198803 NM_011673 ENSMUSG00000028381 Ugcg AU043821|C80537|Epcs21|GlcT-1|Ugcgl - 4 32.44 cM|4 B3 UDP-glucose ceramide glucosyltransferase protein-coding 105243697 XR_878131 Gm14707 - - X A7.3|X 38.3 cM predicted gene 14707 ncRNA 384419 Mm.333124 Igkv8-30 Gm10883 - 6|6 C1 immunoglobulin kappa chain variable 8-30 other 107404 AW743299 - - - expressed sequence AW743299 unknown 547049 Mm.141451 Iqcf2 EG547049 - 9|9 F1 IQ motif containing F2 protein-coding 102633573 XR_377182 Gm31365 - - 5 G2|5 predicted gene, 31365 ncRNA 71290 Mm.298855 4933436I20Rik 4930545H10Rik - 1|1 RIKEN cDNA 4933436I20 gene unknown 13506 Mm.280547 NM_013505 ENSMUSG00000024331 Dsc2 AW228162 - 18 A2|18 11.14 cM desmocollin 2 protein-coding 320672 C230073O14Rik - - 3|3 RIKEN cDNA C230073O14 gene protein-coding 100315693 Mm.261764 D630036H23Rik - - - RIKEN cDNA D630036H23 gene unknown 668832 Rpl31-ps25 EG668832|Gm9388|Rpl36-ps5 - 17 E3|17 ribosomal protein L31. pseudogene 25 pseudo 68074 Mm.463136 NR_027886 A930013F10Rik - - 8|8 A2 RIKEN cDNA A930013F10 gene ncRNA 100312559 Vmn1r-ps131 - - 13 A3.1|13 9.55 cM vomeronasal 1 receptor, pseudogene 131 pseudo 18133 Mm.5167 NM_010930 ENSMUSG00000037362 Nov C130088N23Rik|CCN3 - 15 D1|15 21.49 cM nephroblastoma overexpressed gene protein-coding 606544 Gm6071 EG606544|Ppia-psx_207.1 - X|X A2 peptidylprolyl isomerase A pseudogene x_207.1 pseudo 101055912 XR_376736 ENSMUSG00000095710 LOC101055912 - - 5 A1 uncharacterized LOC101055912 pseudo 61783 D3Mit244 - - 3 35.01 cM DNA segment, Chr 3, Massachusetts Institute of Technology 244 unknown 17652 Ms69 MMS69 - - minisatellites detected by probe MMS69 other 212483 Mm.35661 NM_145382 ENSMUSG00000021495 Fam193b IRIZIO|Kiaa1931 - 13|13 B1 family with sequence similarity 193, member B protein-coding 279028 Mm.330084 NM_001001322 ENSMUSG00000014852 Adamts13 ADAM-TS13|ADAMTS-13|Gm710|vWF-CP - 2|2 A3 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 protein-coding 105242810 XR_869567 Gm38919 - - 6 G2|6 predicted gene, 38919 ncRNA 102636604 XR_867024 Gm33622 - - 2 H3|2 predicted gene, 33622 ncRNA 20466 Mm.15755 NM_011378 ENSMUSG00000042557 Sin3a AW553200|Sin3|mKIAA4126|mSin3A - 9 B|9 30.89 cM transcriptional regulator, SIN3A (yeast) protein-coding 67037 Mm.36715 NM_025928 ENSMUSG00000028066 Pmf1 2600009M07Rik|AL033286|AW060657 - 3|3 F1 polyamine-modulated factor 1 protein-coding 78049 Mm.243883 NR_040620 4930573O16Rik - - 2|2 C1.1 RIKEN cDNA 4930573O16 gene ncRNA 100504140 Mm.72458 NM_177098 4930412M03Rik - - 11|11 B1.3 RIKEN cDNA 4930412M03 gene unknown 101401 Mm.158235 NM_175314 ENSMUSG00000030022 Adamts9 1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik - 6|6 D1 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9 protein-coding 100040557 Mm.383510 NR_151513 ENSMUSG00000085980 Gm12408 - - 4|4 B1 predicted gene 12408 ncRNA 102466914 NR_106056 ENSMUSG00000098787 Mir7088 Gm27577|mmu-mir-7088 - 9|9 F1 microRNA 7088 ncRNA 105245302 XR_872090 Gm40777 - - 10 D2|10 predicted gene, 40777 ncRNA 100042189 Gm3712 - - X|X C3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4 pseudogene pseudo 100041057 XM_006535864 ENSMUSG00000079190 LOC100041057 - - 1|1 sp110 nuclear body protein-like protein-coding 102634380 XR_878742 Gm31976 - - 5 F|5 predicted gene, 31976 ncRNA 226265 Mm.103154 NM_178689 ENSMUSG00000048029 Eno4 6430537H07Rik - 19|19 D2 enolase 4 protein-coding 97732 C81184 - - - expressed sequence C81184 protein-coding 105244410 Gm40023 - - 2|2 predicted gene, 40023 protein-coding 11743 anx - - - anorexia unknown 100036157 Lith22 - - 7 81.85 cM lithogenic gene 22 unknown 102634850 XR_877116 Gm32337 - - 17 E5|17 predicted gene, 32337 ncRNA 331578 Mm.483375 NR_110489 ENSMUSG00000085998 AW822252 C230063B02 - X|X A5 expressed sequence AW822252 ncRNA 78042 Mm.445940 Lrrc75aos1 4930557C09Rik|Fam211aos1 - 11|11 leucine rich repeat containing 75A, opposite strand 1 ncRNA 732526 Gt(pU21)27Imeg Ayu21-27|GtAyu21-27 - - gene trap 27, Institute of Molecular Embryology and Genetics unknown 102634810 Gm32308 - - 6 D3|6 predicted gene, 32308 pseudo 27861 D0Nds21 - - - DNA segment, Nuffield Department of Surgery 21 unknown 100036059 T2dm1sa Nfbg - - type 2 diabetes mellitus 1 in SMXA RI mice unknown 100043173 Mm.304207 XM_006508432 BB114814 - - 7|7 F3 expressed sequence BB114814 protein-coding 105242632 XR_868981 Gm38791 - - 6 B1|6 predicted gene, 38791 ncRNA 105243064 XR_869978 Gm39095 - - 7 F3|7 predicted gene, 39095 ncRNA 214585 Mm.222303 NM_145531 ENSMUSG00000033396 Spg11 6030465E24Rik|A330015I11|C530005A01Rik - 2|2 E5 SPG11, spatacsin vesicle trafficking associated protein-coding 108168844 XR_001783634 Gm46792 - - 2 H4|2 predicted gene, 46792 ncRNA 360105 D17Brg23 - - - DNA segment, Chr 17, David E. Bergstrom 23 unknown 105242949 XR_882098 Gm39020 - - 7 B5|7 predicted gene, 39020 ncRNA 108359 Emv40 Emv-40 - - endogenous ecotropic MuLV 40 other 106704 AU018902 - - - expressed sequence AU018902 unknown 229700 Mm.27966 NM_001045807 ENSMUSG00000048109 Rbm15 C230088J01Rik|mKIAA1438 - 3|3 F2.3 RNA binding motif protein 15 protein-coding 71210 4933434C23Rik - - X|X E1 RIKEN cDNA 4933434C23 gene protein-coding 56273 Mm.184172 NM_019781 ENSMUSG00000028975 Pex14 Pex14p|R75137 - 4|4 E2 peroxisomal biogenesis factor 14 protein-coding 319179 Mm.440391 NM_178194 ENSMUSG00000047246 Hist1h2be - - 13|13 A3.1 histone cluster 1, H2be protein-coding 64934 Mm.28659 NM_022889 ENSMUSG00000020430 Pes1 - - 11|11 A1 pescadillo ribosomal biogenesis factor 1 protein-coding 12155 Mm.42160 NM_009757 ENSMUSG00000023279 Bmp15 AU015375|AU018861|AU021453|Bmp-15|C86824|C87336|GDF-9B - X A1.1|X 2.81 cM bone morphogenetic protein 15 protein-coding 100504283 Mm.417760 XR_871480 Gm20149 - - 10 A3|10 9.75 cM predicted gene, 20149 protein-coding 102634715 XM_011243251 Gm32234 - - 10 B1|10 predicted gene, 32234 protein-coding 16181 Mm.882 NM_031167 ENSMUSG00000026981 Il1rn F630041P17Rik|IL-1ra - 2 A3|2 16.36 cM interleukin 1 receptor antagonist protein-coding 212070 Mm.39721 NM_178669 ENSMUSG00000050866 Clrn3 AI649392|Tmem12 - 7|7 F3 clarin 3 protein-coding 100035337 Lbn1 LBN1.1 - 1 38.55 cM long bones 1 unknown 330143 Mm.447255 LOC330143 A830049A06 - 5|5 E5 uncharacterized LOC330143 ncRNA 218613 Mm.31012 NM_172593 ENSMUSG00000032727 Mier3 5730509D14|AU015422|D130064H19Rik - 13|13 D2.2 MIER family member 3 protein-coding 111917 Iapls3-69 - - - intracisternal A particle, lymphocyte specific, probe 3-69 other 360091 D17Jcs45 - - - DNA segment, Chr 17, John C. Schimenti 45 unknown 100034814 Lbm9 - - - lean body mass 9 unknown 667175 Gm15727 EG667175 - 5 F|5 predicted gene 15727 pseudo 100042673 Gm3956 - - 7 A1|7 vomeronasal 2, receptor 37 pseudogene pseudo 382217 Mm.422933 NM_001126317 ENSMUSG00000079578 Gm1140 - - X|X A7.1 predicted gene 1140 protein-coding 230249 Mm.234801 NM_172381 ENSMUSG00000050812 AI314180 AW558785|BB181316|Ecpas|mKIAA0368 - 4|4 B3 expressed sequence AI314180 protein-coding 100217426 NR_028526 ENSMUSG00000064437 Snord49b MBII-252|MBII-366 - 11 B2|11 small nucleolar RNA, C/D box 49B snoRNA 100036510 Trmq5 - - 3 38.19 cM T cell ratio modifier QTL 5 unknown 102639151 XR_390923 Gm35531 - - 4 E1|4 predicted gene, 35531 ncRNA 105242548 XR_868652 Gm38730 - - 5 G2|5 predicted gene, 38730 ncRNA 230678 Mm.23639 NM_172383 ENSMUSG00000050854 Tmem125 6330530A05Rik|AV223516 - 4|4 D2.1 transmembrane protein 125 protein-coding 110188 Fvis1 Fis-1|Fis1 - - Friend virus integration site 1 protein-coding 16383 Is(7;InX)1Neu Is1Neu - - insertion, Chr 7 piece into inverted Chr X, Neuhauser-Klaus 1 other 233744 Mm.334160 NM_145584 ENSMUSG00000038156 Spon1 AI666765|AW455831|BC020531|D330035F22Rik|FSP - 7|7 F1 spondin 1, (f-spondin) extracellular matrix protein protein-coding 100417614 Gm13240 - - 4|4 E1 tousled-like kinase 2 pseudogene pseudo 100188958 Gm15824 - - 5|5 C3.1 predicted gene 15824 pseudo 105123 AI256346 - - - expressed sequence AI256346 unknown 102632112 XR_377371 Gm30270 Gm42582 - 6 A3.1|6 predicted gene, 30270 ncRNA 622978 Gm6378 EG622978 - 18|18 A2 ribosomal protein L27A pseudogene pseudo 102632837 XM_006519865 ENSMUSG00000112858 Rnf212b Gm10332|Gm30805 - 14|14 C2 ring finger protein 212B protein-coding 102639400 XR_867631 Gm35726 - - 3 G3|3 predicted gene, 35726 ncRNA 102639017 Gm35436 - - 10|10 predicted gene, 35436 ncRNA 12585 Mm.1640 NM_007672 ENSMUSG00000030878 Cdr2 AA617262 - 7 F2|7 65.04 cM cerebellar degeneration-related 2 protein-coding 102632375 XR_868422 Gm30464 - - 5 C1|5 predicted gene, 30464 ncRNA 628438 Hspe1-rs1 Cpn10-rs1|EG628438|EPF - 18|18 C heat shock protein 1 (chaperonin 10), related sequence 1 pseudo 171255 Mm.377209 NM_134221 ENSMUSG00000094898 Vmn1r201 V1ri4 - 13|13 A3.1 vomeronasal 1 receptor 201 protein-coding 105243044 XR_869910 Gm39080 - - 7 F2|7 predicted gene, 39080 ncRNA 102637196 XR_385803 Gm34070 - - 17 E3|17 predicted gene, 34070 ncRNA 100312482 Vmn1r-ps44 - - 7|7 A1 vomeronasal 1 receptor, pseudogene 44 pseudo 72136 Mm.486238 NM_028117 ENSMUSG00000074916 Chst14 2600016L03Rik|D4ST-1|D4st1 - 2|2 E5 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 protein-coding 105246426 XR_877371 Gm41716 - - 18 B3|18 predicted gene, 41716 ncRNA 111040 Rrm2-ps1 - - - ribonucleotide reductase M2 pseudogene 1 pseudo 100042651 Tubb4b-ps1 Tubb2c-ps1|Tubb2c2 - 5|5 A1 tubulin, beta 4B class IVB, pseudogene 1 pseudo 102632815 XR_379206 Gm30791 - - 9 A4|9 predicted gene, 30791 ncRNA 636680 Gm7183 - - 9 F3|9 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105246955 Gm42148 - - 5|5 predicted gene, 42148 protein-coding 665356 Gm7599 EG665356 - 18|18 A1 NSA2 ribosome biogenesis homolog pseudogene pseudo 67226 Mm.29647 NM_133683 ENSMUSG00000069520 Tmem19 2810428F02Rik|AW125171 - 10|10 D2 transmembrane protein 19 protein-coding 27474 51T - - - DNA segment, 51T unknown 62256 D18Mit47 - - 18 52.38 cM DNA segment, Chr 18, Massachusetts Institute of Technology 47 unknown 60813 D4Mit46 - - 4 48.18 cM DNA segment, Chr 4, Massachusetts Institute of Technology 46 unknown 223413 Mm.117475 9230109A22Rik - - 15|15 B1 RIKEN cDNA 9230109A22 gene unknown 76206 Mm.256065 NM_029536 ENSMUSG00000031210 Gpr165 6530406P05Rik - X C3|X G protein-coupled receptor 165 protein-coding 97302 C79845 - - - expressed sequence C79845 unknown 116857 Bdt3 - - 6 63.63 cM bone density traits 3 unknown 105246740 XR_878645 Gm41982 - - 2 H4|2 predicted gene, 41982 ncRNA 272538 Mm.87151 NM_173037 ENSMUSG00000041949 Tango6 AW413431|E330010G16|Tmco7 - 8|8 D3 transport and golgi organization 6 protein-coding 108167484 XM_017312473 Gm46013 - - 7 D3|7 predicted gene, 46013 protein-coding 75470 Mm.63799 NM_029300 ENSMUSG00000066382 Iqcf5 1700007L12Rik - 9|9 F1 IQ motif containing F5 protein-coding 208428 Rpl19-ps12 Gm14449 - X|X A1.1 ribosomal protein L19, pseudogene 12 pseudo 667532 Gm8689 EG667532 - 10|10 D1 THO complex 4 pseudogene pseudo 102637419 XR_379747 4930540E01Rik - - 9|9 E3.3 RIKEN cDNA 4930540E01 gene ncRNA 216456 Mm.30102 NM_001033264 ENSMUSG00000044005 Gls2 A330074B06Rik|AI195532|GA|GLS|Lga - 10|10 D3 glutaminase 2 (liver, mitochondrial) protein-coding 632352 Gm7085 EG632352 - 16 A2|16 predicted gene 7085 pseudo 100503684 Gm15125 - - X|X 68.46 cM predicted gene 15125 pseudo 102639797 XR_378180 Gm15767 - - 6 G3|6 78.1 cM predicted gene 15767 ncRNA 100416843 Gm18290 - - 6|6 C3 syndecan binding protein pseudogene pseudo 105245744 XR_874578 Gm41143 - - 14 C1|14 predicted gene, 41143 ncRNA 100035035 Arigg2 - - - anti-RBC IgG antibodies 2 unknown 105244370 Mm.256916 XR_867022 Gm14261 - - 2 H3|2 88.99 cM predicted gene 14261 ncRNA 105245828 XR_874847 Gm41218 - - 14 D3|14 predicted gene, 41218 ncRNA 70868 4921515L22Rik - - 10|10 RIKEN cDNA 4921515L22 gene protein-coding 434041 Igkv8-27 Gm16944 - 6|6 C1 immunoglobulin kappa chain variable 8-27 other 66866 Mm.46346 NM_025811 ENSMUSG00000025078 Nhlrc2 1200003G01Rik|AI835049|AV002846|AW496455 - 19|19 D2 NHL repeat containing 2 protein-coding 100124466 NR_030573 ENSMUSG00000077025 Mir493 Mirn493|mmu-mir-493 - 12 F1|12 microRNA 493 ncRNA 212943 Mm.74610 NM_001160378 ENSMUSG00000032265 Fam46a BAP014|D930050G01Rik - 9|9 E3.1 family with sequence similarity 46, member A protein-coding 100125931 Mm.400392 NR_030676 ENSMUSG00000089998 Phtf1os A130049A11Rik - 3 F2.2|3 putative homeodomain transcription factor 1, opposite strand ncRNA 238428 Mm.460983 Ighv1-2 Gm17000 - 12|12 F2 immunoglobulin heavy variable 1-2 pseudo 668436 Gm9169 EG668436 - 3|3 F2.1 predicted gene 9169 pseudo 53874 Ear8 R8|mR8 - - eosinophil-associated, ribonuclease A family, member 8 protein-coding 72386 Mm.266961 NR_015556 ENSMUSG00000087259 2610035D17Rik - - 11|11 E2 RIKEN cDNA 2610035D17 gene ncRNA 101056238 Gm29807 - - 10 C1|10 predicted gene, 29807 pseudo 624362 Gm6497 EG624362 - 2|2 D predicted gene 6497 unknown 735289 NR_030485 ENSMUSG00000076060 Mir704 Mirn704|mir-704|mmu-mir-704 - 6 B2.3|6 microRNA 704 ncRNA 105243322 XR_879321 Gm39278 - - 8 E1|8 predicted gene, 39278 ncRNA 75489 Mm.443252 NR_126464 ENSMUSG00000105023 1700012D16Rik - - 3|3 H3 RIKEN cDNA 1700012D16 gene ncRNA 100039218 Gm2106 - - 19|19 A zinc finger protein 384 pseudogene pseudo 14780 Mm.1332 NM_010343 ENSMUSG00000004344 Gpx5 AV379049|Arep - 13 A3.1|13 7.73 cM glutathione peroxidase 5 protein-coding 668443 Gm9171 EG668443 - 14|14 D2 predicted gene 9171 pseudo 19654 Mm.139926 NM_011251 ENSMUSG00000032582 Rbm6 4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015 - 9|9 F1 RNA binding motif protein 6 protein-coding 102853 Mm.368339 AA517446 - - - expressed sequence AA517446 unknown 102633341 Gm31189 - - 5|5 predicted gene, 31189 ncRNA 100306970 Gm17816 - - 12|12 A1.1 ubiquitin associated protein 2-like pseudogene pseudo 100036449 Gnf4 - - 2 62.49 cM growth and fatness 4 unknown 624574 Rap1a-ps2 Gm13984|Rap1a-rs2 - 2 E5|2 59.14 cM RAS related protein 1a, pseudogene 2 pseudo 105244986 Gm40503 - - 8|8 predicted gene, 40503 ncRNA 100124399 Traj3 Gm16916 - 14|14 C2 T cell receptor alpha joining 3 other 52916 D15Uci1e - - - DNA segment, Chr 15, University of California, Irvine 1, expressed unknown 266692 Mm.27660 NM_170588 ENSMUSG00000074643 Cpne1 1810028N16Rik|mKIAA4108 - 2|2 H1 copine I protein-coding 102636662 XR_373428 Gm33667 - - 1 C1.3|1 predicted gene, 33667 ncRNA 622509 Gm6327 EG622509 - 16|16 A1 predicted gene 6327 protein-coding 100504153 Gm20089 - - 3|3 22.87 cM predicted gene, 20089 ncRNA 67302 Mm.74704 NM_026083 ENSMUSG00000022000 Zc3h13 2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618 - 14|14 D3 zinc finger CCCH type containing 13 protein-coding 100503192 Gm19587 - - 1|1 23.49 cM ADP-ribosylation factor 1-like pseudo 102635519 Mm.435427 XR_882331 Gm28326 CH36-142O22.1 - Y C2|Y predicted gene 28326 ncRNA 257910 Mm.377296 NM_001011755 ENSMUSG00000094531 Olfr671 MOR32-12 - 7|7 E3 olfactory receptor 671 protein-coding 78181 Mm.439146 4930517L18Rik - - - RIKEN cDNA 4930517L18 gene protein-coding 101055790 LOC101055790 - - - PRAME family member 8-like pseudo 62730 D19Mit101 - - 19 32.35 cM DNA segment, Chr 19, Massachusetts Institute of Technology 101 unknown 353165 Mm.377889 NM_181276 ENSMUSG00000053217 Tas2r136 Tas2r36|mt2r52 - 6 G1|6 64.03 cM taste receptor, type 2, member 136 protein-coding 102640521 XR_373831 Gm36561 - - 1 H6|1 predicted gene, 36561 ncRNA 207819 Mm.248931 NM_172450 ENSMUSG00000048905 4930539E08Rik 9130014G02 - 17|17 A3.3 RIKEN cDNA 4930539E08 gene protein-coding 66460 Mm.44218 NM_025575 ENSMUSG00000045503 Sys1 2610042O14Rik|AI266964|C87389 - 2|2 H3 SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) protein-coding 105247067 LOC105247067 - - 5 B1 nucleoside diphosphate kinase B pseudogene pseudo 387200 NR_029591 ENSMUSG00000065507 Mir204 Mirn204|mir-204|mmu-mir-204 - 19|19 B microRNA 204 ncRNA 108169188 XR_001785427 Gm46983 - - 6 A1|6 predicted gene, 46983 ncRNA 72621 Mm.291607 NM_028303 ENSMUSG00000015668 Pdzd11 1810012H22Rik|2310079D11Rik|2700099C19Rik|AI854765|Pdzk11 - X|X C3 PDZ domain containing 11 protein-coding 52207 D1Ertd309e - - - DNA segment, Chr 1, ERATO Doi 309, expressed unknown 62703 D17Mit139 - - 17 27.4 cM DNA segment, Chr 17, Massachusetts Institute of Technology 139 unknown 100503549 Mm.491086 NM_001281514 ENSMUSG00000072188 Gm10354 - - 5 A2|5 6.48 cM predicted gene 10354 protein-coding 105246471 XR_877488 Gm41756 - - 18 E1|18 predicted gene, 41756 ncRNA 674098 Trav8-1 Gm13950 - 14|14 C2 T cell receptor alpha variable 8-1 other 108361 Mtv24 Mtv-24 - - mammary tumor virus locus 24 other 667468 Gm8649 EG667468 - 6 A1|6 predicted gene 8649 pseudo 102637649 XR_872688 Gm34408 - - 12 A3|12 predicted gene, 34408 ncRNA 628822 Gm6919 EG628822 - 17|17 C predicted gene 6919 protein-coding 382723 Rpl10a-ps2 EG382723|Gm5192 - 13|13 A1 ribosomal protein L10A, pseudogene 2 pseudo 108511958 Hebp1r1 - - 6 G1 Hebp1R1 erythroid cis-regulatory module biological-region 102637863 LOC102637863 - - 9 A2 cyclin-dependent kinases regulatory subunit 2 pseudogene pseudo 61884 D1Mit318 - - 1 12.82 cM DNA segment, Chr 1, Massachusetts Institute of Technology 318 unknown 104370 NR_002901 Snora68 MBI-30|Rnu68 - 8|8 B3.3 small nucleolar RNA, H/ACA box 68 snoRNA 382807 Gm5200 EG382807 - 13|13 D2.3 keratin 18 pseudogene pseudo 68153 Mm.286104 NM_026584 ENSMUSG00000031585 Gtf2e2 34kDa|AI462509|C330006J08Rik - 8|8 A3-A4 general transcription factor II E, polypeptide 2 (beta subunit) protein-coding 102637711 LOC102637711 - - 17 A1 E3 ubiquitin-protein ligase TRIP12-like pseudo 102636909 XR_001780335 Gm33851 - - 11 D|11 predicted gene, 33851 ncRNA 231201 Mm.423959 NM_153093 ENSMUSG00000057116 AF366264 Susp4 - 8|8 A1.1 cDNA sequence AF366264 protein-coding 51978 D2Ggc1e - - - DNA segment, Chr 2, G. Consalez 1, expressed unknown 105243706 XR_878180 Gm39527 - - X C3|X predicted gene, 39527 ncRNA 111920 Iapls3-47 - - - intracisternal A particle, lymphocyte specific, probe 3-47 other 20558 Mm.38192 NM_011410 ENSMUSG00000000204 Slfn4 AI450778 - 11|11 C schlafen 4 protein-coding 268885 Mm.187847 NM_173869 ENSMUSG00000059657 Stfa2l1 - - 16|16 B3 stefin A2 like 1 protein-coding 20305 Mm.137 NM_009139 ENSMUSG00000018927 Ccl6 MRP-1|Scya6|c10 - 11 C|11 50.85 cM chemokine (C-C motif) ligand 6 protein-coding 329002 Mm.34438 NM_177832 ENSMUSG00000041258 Zfp236 AI447957|Gm335 - 18 E3|18 56.26 cM zinc finger protein 236 protein-coding 100036366 Etax9 - - - ethanol induced ataxia 9 unknown 78284 Mm.299952 NM_030080 ENSMUSG00000027938 Creb3l4 1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1 - 3|3 F1 cAMP responsive element binding protein 3-like 4 protein-coding 209003 Mm.32561 NM_173376 ENSMUSG00000031107 Rbmx2 2700089A17Rik|2810411A03Rik|CGI-79 - X|X A5 RNA binding motif protein, X-linked 2 protein-coding 21162 T(3;12)30Rk T30Rk - - reciprocal translocation, Chr 3 and 12, Roderick 30 other 72040 Mm.29080 NM_028069 ENSMUSG00000025497 Cdhr5 1810074H01Rik|AI481143|Mucdhl|Mupcdh - 7|7 F5 cadherin-related family member 5 protein-coding 217071 Mm.342127 NM_001033266 ENSMUSG00000072553 Gm525 - - 11|11 C predicted gene 525 protein-coding 102633837 Gm31567 - - 2|2 predicted gene, 31567 protein-coding 66373 Mm.25642 NM_025520 ENSMUSG00000091625 Lsm5 2010208O10Rik|2310034K10Rik - 6|6 B3 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 105245820 XR_874820 Gm41210 - - 14 D3|14 predicted gene, 41210 ncRNA 19500 Rb(16.17)7Bnr Rb7Bnr - - Robertsonian translocation, Chr 16 and 17, Universitat Bonn/Rhein 7 other 223278 Gm4823 EG223278 - 15|15 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 107372314 LOC107372314 - - 2 H3 adenosine deaminase intronic regulatory elements biological-region 14828 Mm.330160 NM_022310 ENSMUSG00000026864 Hspa5 AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP - 2 B|2 22.94 cM heat shock protein 5 protein-coding 628919 Mm.426038 Gm6934 EG628919 - 17|17 C predicted gene 6934 protein-coding 105243435 XR_870861 Gm39360 - - 9 C|9 predicted gene, 39360 ncRNA 78172 Mm.243835 NR_046191 ENSMUSG00000106932 4930487D11Rik - - 5|5 B3 RIKEN cDNA 4930487D11 gene ncRNA 112168 Faq7 - - - fluctuating asymmetry QTL 7 unknown 100504338 Gm12163 - - 11 B1.1|11 27.43 cM ATP synthase subunit g, mitochondrial-like pseudo 102632561 XR_387491 Gm30602 - - 1 G3|1 predicted gene, 30602 ncRNA 102631730 Mm.159430 NM_001305143 ENSMUSG00000062511 4930512M02Rik - - 11|11 A1 RIKEN cDNA 4930512M02 gene protein-coding 15902 Mm.34871 NM_010496 ENSMUSG00000020644 Id2 AI255428|C78922|Idb2|bHLHb26 - 12 A1.3|12 8.57 cM inhibitor of DNA binding 2 protein-coding 105244041 XR_865814 Gm39725 - - 1 H5|1 predicted gene, 39725 ncRNA 212986 Mm.134147 NM_178672 ENSMUSG00000062110 Scfd2 E430013M20Rik|STXBP1L1 - 5|5 C3.3 Sec1 family domain containing 2 protein-coding 723856 NR_030270 ENSMUSG00000076006 Mir376c Mirn376c|mir-376c - 12 F1|12 microRNA 376c ncRNA 108461 Ms64 MMS64 - - minisatellites detected by probe MMS64 other 52704 D11Ertd717e - - 11 64.12 cM DNA segment, Chr 11, ERATO Doi 717, expressed protein-coding 100035623 Lith18 - - 8 44.99 cM lithogenic gene 18 unknown 108167395 LOC108167395 - - - Ig heavy chain V region 7-39-like other 111268 Acadm-ps1 - - - acyl-Coenzyme A dehydrogenase, medium chain, pseudogene 1 pseudo 666858 Rps11-ps5 EG666858|Gm8329 - 7|7 E1 ribosomal protein S11, pseudogene 5 pseudo 105244958 XR_872873 Gm40476 - - 12 D1|12 predicted gene, 40476 ncRNA 61999 D8Mit346 - - 8 39.59 cM DNA segment, Chr 8, Massachusetts Institute of Technology 346 unknown 100040990 Mm.491539 Gm3081 - - 9 E4|9 predicted gene 3081 unknown 105246459 XR_877468 Gm41745 - - 18 E1|18 predicted gene, 41745 ncRNA 112136086 LOC112136086 - - - uncharacterized LOC112136086 pseudo 13116 Mm.41911 NM_010010 ENSMUSG00000021259 Cyp46a1 CH24H|Cyp46 - 12|12 F1 cytochrome P450, family 46, subfamily a, polypeptide 1 protein-coding 723882 NR_030259 ENSMUSG00000072837 Mir546 Mirn546|mmu-mir-546 - 10|10 D3 microRNA 546 ncRNA 102632336 XR_377639 Gm30435 - - 6 B2.3|6 predicted gene, 30435 ncRNA 15565 Mm.291096 NM_021358 ENSMUSG00000028747 Htr6 5-HT6 - 4 D3|4 70.57 cM 5-hydroxytryptamine (serotonin) receptor 6 protein-coding 100529077 NR_037683 Snord42b MBII-287|U42B - 11 B5|11 46.74 cM small nucleolar RNA, C/D box 42B snoRNA 100417034 LOC100417034 - - 6|6 F2 vomeronasal 2, receptor 26 pseudogene pseudo 72630 Mm.277465 NM_028306 ENSMUSG00000074793 Hspa12b 2700081N06Rik - 2|2 F1 heat shock protein 12B protein-coding 102635456 XR_384403 Gm32789 - - 15 F1|15 predicted gene, 32789 ncRNA 245566 Mm.250428 NM_173436 ENSMUSG00000090132 Cypt2 Ckt1|Cypt2-ps - X|X D cysteine-rich perinuclear theca 2 protein-coding 102632970 XR_391294 Gm30912 - - 7 B3|7 predicted gene, 30912 ncRNA 20535 Mm.4580 NM_009207 ENSMUSG00000028962 Slc4a2 Ae2|B3RP - 5 A3|5 11.74 cM solute carrier family 4 (anion exchanger), member 2 protein-coding 387195 NR_029715 ENSMUSG00000065473 Mir19b-2 Mirn19b|Mirn19b-2|miR-19b|mir-19b-2 - X A5|X microRNA 19b-2 ncRNA 435273 NM_001085526 ENSMUSG00000078131 Krtap1-3 - - 11|11 D keratin associated protein 1-3 protein-coding 102639399 Mm.122052 NR_136761 ENSMUSG00000113666 Gm35725 - - 12 A1.1|12 predicted gene, 35725 ncRNA 71091 Mm.132325 NM_183294 ENSMUSG00000020990 Cdkl1 4933411O17Rik - 12|12 C2 cyclin-dependent kinase-like 1 (CDC2-related kinase) protein-coding 78036 4930551I20Rik - - 14|14 RIKEN cDNA 4930551I20 gene protein-coding 208439 Mm.388281 NM_001164493 ENSMUSG00000020627 Klhl29 A230106N14Rik|Gm68|Kbtbd9|mKIAA1921 - 12|12 A1.1 kelch-like 29 protein-coding 102636579 Gm10298 - - 7|7 28.25 cM predicted gene 10298 protein-coding 105246619 Scgb2a2 - - - secretoglobin, family 2A, member 2 protein-coding 62008 D7Mit343 - - 7 18.56 cM DNA segment, Chr 7, Massachusetts Institute of Technology 343 unknown 102632348 XR_875887 Gm30444 - - 16 A1|16 predicted gene, 30444 ncRNA 73771 Mm.452748 4930421P05Rik - - 2|2 H4 RIKEN cDNA 4930421P05 gene protein-coding 102465672 NR_106066 ENSMUSG00000106328 Mir7118 mmu-mir-7118 - 15|15 E3 microRNA 7118 ncRNA 60928 D9Mit67 - - 9 20.71 cM DNA segment, Chr 9, Massachusetts Institute of Technology 67 unknown 102639318 XR_870836 Gm35658 - - 9 B|9 predicted gene, 35658 ncRNA 21302 T(X;2)14Rl T14Rl - - reciprocal translocation, Chr X and 2, Russell 14 other 60531 Mm.157158 NM_021892 ENSMUSG00000029831 Npvf Rfrp - 6|6 B2.3 neuropeptide VF precursor protein-coding 100503797 Mm.483561 Gm11738 - - 11|11 82.96 cM predicted gene 11738 unknown 105245870 XR_874998 Gm41254 - - 15 A1|15 predicted gene, 41254 ncRNA 72145 Mm.332522 NM_172882 ENSMUSG00000043940 Wdfy3 2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993 - 5 E4-E5|5 48.95 cM WD repeat and FYVE domain containing 3 protein-coding 100534380 LOC100534380 - - 9|9 E3.3 adaptor-related protein complex 2, beta 1 subunit pseudogene pseudo 100861499 NR_046152 ENSMUSG00000096300 Gm25212 Rn5s28 - 8 E1|8 predicted gene, 25212 rRNA 381802 Mm.291208 NM_199033 ENSMUSG00000042389 Tsen2 AU067695 - 6|6 E3 tRNA splicing endonuclease subunit 2 protein-coding 627537 Mm.469858 NM_001104562 ENSMUSG00000091859 Vmn2r100 EG627537 - 17|17 A3.2 vomeronasal 2, receptor 100 protein-coding 18776 Mm.37203 NM_008865 ENSMUSG00000038891 Prl3b1 Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII - 13 A3.1|13 12.35 cM prolactin family 3, subfamily b, member 1 protein-coding 100417923 Gm18900 - - 1|1 H2.3 predicted gene, 18900 pseudo 78460 Mm.452060 NR_040774 1700057H15Rik - - 4|4 D2.2 RIKEN cDNA 1700057H15 gene ncRNA 100861679 XM_006540507 Gm21129 - - 7 B3|7 predicted gene, 21129 protein-coding 102636777 XR_381111 LOC102636777 - - 11 A3.2 uncharacterized LOC102636777 ncRNA 102634484 XR_375135 Gm32057 - - 2 H1|2 predicted gene, 32057 ncRNA 665757 Gm7773 EG665757 - 17|17 A3.3 ribosomal protein L36 pseudogene pseudo 100504183 Mm.426560 NM_001256057 ENSMUSG00000078253 Krtap16-1 Gm11570 - 11|11 D keratin associated protein 16-1 protein-coding 100504036 Gm20026 - - 17 A3.3|17 13.08 cM transcription elongation factor B polypeptide 1-like pseudo 630757 Gm7042 EG630757 - 13|13 A1 predicted gene 7042 pseudo 105246028 Gm41390 - - 15 F1|15 nuclear receptor coactivator 2 pseudogene pseudo 102465656 NR_106050 ENSMUSG00000098907 Mir7082 Gm27933|mmu-mir-7082 - 9|9 A3 microRNA 7082 ncRNA 66647 Mm.19944 NM_023239 ENSMUSG00000070520 Nsmce3 5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1 - 7|7 C NSE3 homolog, SMC5-SMC6 complex component protein-coding 668482 Gm9195 - - 14 D2|14 predicted gene 9195 protein-coding 102637217 XR_873828 Gm34087 - - 13 D1|13 predicted gene, 34087 ncRNA 51878 D4Ertd298e - - - DNA segment, Chr 4, ERATO Doi 298, expressed unknown 72824 Mm.214454 2810457G06Rik - - 14|14 RIKEN cDNA 2810457G06 gene unknown 629182 Gm6954 EG629182 - X|X B anaphase promoting complex subunit 13 pseudogene pseudo 108156 Mm.29584 NM_138745 ENSMUSG00000021048 Mthfd1 Dcs|E430024A07Rik|Mthfd - 12|12 C3 methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase protein-coding 105352 Mm.289646 NM_134068 ENSMUSG00000069255 Dusp22 JKAP|JSP1|LMW-DSP2|MKPX - 13|13 A3.2 dual specificity phosphatase 22 protein-coding 18229 nv - - - Nijmegen waltzer unknown 100628612 NR_039573 ENSMUSG00000092868 Mir5113 mir-5113|mmu-mir-5113|mu-mir-5113 - 15 E1|15 37.94 cM microRNA 5113 ncRNA 102643033 LOC102643033 - - - zinc finger protein OZF protein-coding 105246751 XR_878669 Gm41993 - - 3 A1|3 predicted gene, 41993 ncRNA 668387 Gm9143 EG668387 - X|X D predicted gene 9143 pseudo 104133 H17 H-17 - - histocompatibility 17 protein-coding 102634970 XR_387683 Gm32422 - - 5 F|5 predicted gene, 32422 ncRNA 71232 Mm.50944 NR_045307 4933429K18Rik - - 19|19 C3 RIKEN cDNA 4933429K18 gene ncRNA 64452 Mm.154797 NM_133184 ENSMUSG00000020229 Slc5a4a SGLT3-a - 10|10 C1 solute carrier family 5, member 4a protein-coding 53608 Mm.36640 NM_016693 ENSMUSG00000028862 Map3k6 Ask2|MAPKKK6|MEKK6 - 4|4 D2.3 mitogen-activated protein kinase kinase kinase 6 protein-coding 668140 Gm8996 EG668140 - 14|14 C3 40S ribosomal protein S17 pseudogene pseudo 73611 Mm.389030 XR_389634 1700112D23Rik - - 3|3 A3 RIKEN cDNA 1700112D23 gene unknown 271171 Tpi-rs9 EG271171|Gm5061|Tpi-9 - 14 A2|14 7.08 cM triosephosphate isomerase related sequence 9 pseudo 69584 2310035O12Rik - - - RIKEN cDNA 2310035O12 gene protein-coding 100044740 LOC100044740 - - 2|2 ribosomal protein S28-like protein-coding 50995 Mm.27560 NM_016682 ENSMUSG00000052997 Uba2 AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b - 7|7 B1 ubiquitin-like modifier activating enzyme 2 protein-coding 619715 Mm.390575 NR_131140 ENSMUSG00000112963 Gm6093 EG619715 - 13|13 A3.3 predicted gene 6093 ncRNA 319893 Mm.490625 NR_015533 A230057D06Rik - - 7|7 C RIKEN cDNA A230057D06 gene ncRNA 105244237 XR_866559 1700055L01Rik - - 2|2 E1 RIKEN cDNA 1700055L01 gene ncRNA 18205 Mm.267570 NM_008742 ENSMUSG00000049107 Ntf3 AI316846|AI835689|HDNF|NGF-2|Nt3|Ntf-3 - 6 F3|6 60.45 cM neurotrophin 3 protein-coding 108168250 Gm46525 - - 15 E1|15 60S ribosomal protein L36 pseudogene pseudo 108474 Ms89 MMS89 - - minisatellites detected by probe MMS89 other 69062 Mm.443375 1810008B01Rik - - 8|8 RIKEN cDNA 1810008B01 gene unknown 666872 Gm13501 - - 2|2 C1.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102632393 XR_375103 Gm30478 - - 2 G3|2 predicted gene, 30478 ncRNA 75786 Mm.168478 NM_029437 ENSMUSG00000040549 Ckap5 3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097 - 2|2 E1 cytoskeleton associated protein 5 protein-coding 497071 Mm.378602 NM_001011687 ENSMUSG00000068392 Rnase13 - - 14|14 C1 ribonuclease, RNase A family, 13 (non-active) protein-coding 619876 Gm6108 - - 7|7 F3 predicted gene 6108 pseudo 667922 Gm11263 - - 4|4 C3 ribosomal protein S6 pseudogene pseudo 110212 Xic Cg|Xce - X|X X chromosome inactivation center other 77923 A330107A15Rik - - 4|4 RIKEN cDNA A330107A15 gene protein-coding 100036064 Cocia13 - - 17 23.97 cM cocaine induced activation 13 unknown 53155 FBLA2-1092 - - - DNA segment, FBLA2-1092 unknown 53096 FBLA2-2 - - - DNA segment, FBLA2-2 unknown 108384 Srev8 Srev-8 - - SWR/J-RF/J ecotropic provirus 8 other 665071 Gm7476 EG665071 - 12|12 B3 60S ribosomal protein L10 (QM protein homolog) pseudo 100418369 Gm19165 - - 6|6 B3 TPX2, microtubule-associated protein homolog pseudogene pseudo 666545 Gm15616 EG666545 - 5 C3.2|5 60S ribosomal protein L5 pseudogene pseudo 668457 Rps10-ps1 EG668457|Gm9180 - 3|3 F2.1 ribosomal protein S10, pseudogene 1 pseudo 102642752 LOC102642752 - - - 40S ribosomal protein S24 protein-coding 53774 D1Fcr2 D1Bh149|D1Fcr149 - - DNA segment, Chr 1, Frederick Cancer Research unknown 101056047 Gm28455 - - 7 B3|7 predicted gene 28455 pseudo 723866 NR_029951 ENSMUSG00000070080 Mir431 Mirn431|mir-431|mmu-mir-431 - 12|12 F1 microRNA 431 ncRNA 433468 Gm14058 EG433468 - 2|2 E5 predicted gene 14058 pseudo 232748 Mm.279659 NM_146174 ENSMUSG00000029851 Tcaf2 Fam115c - 6|6 B2.1 TRPM8 channel-associated factor 2 protein-coding 12373 Mm.15343 NM_009814 ENSMUSG00000027861 Casq2 AA033488|AW146219|Csq2|ESTM52|cCSQ - 3|3 F2.2 calsequestrin 2 protein-coding 492962 Grv GrV6a - 6 21.63 cM granule cell layer volume unknown 114470 Sle7 Bxs1 - 1 32.31 cM systematic lupus erythematosus susceptibility 7 unknown 381112 Mm.360004 NM_001145452 ENSMUSG00000054901 Arhgef33 Gm941 - 17|17 E3 Rho guanine nucleotide exchange factor (GEF) 33 protein-coding 65957 Ccl19-ps1 ELC|Scya19-ps1 - 4 A5|4 22.13 cM chemokine (C-C motif) ligand 19, pseudogene 1 pseudo 30873 C77614 - - - EST C77614 protein-coding 258809 Mm.223236 NM_146813 ENSMUSG00000073928 Olfr651 MOR31-11 - 7|7 E3 olfactory receptor 651 protein-coding 102634903 XR_387841 Gm32377 - - 8 C2|8 predicted gene, 32377 ncRNA 17123 Mm.391556 NM_013591 ENSMUSG00000020310 Madcam1 AV211525|MAdCAM-1 - 10 C1|10 39.72 cM mucosal vascular addressin cell adhesion molecule 1 protein-coding 102632672 XR_381631 Gm30687 - - 12 C1|12 predicted gene, 30687 ncRNA 105247239 Gm42371 - - 7|7 predicted gene, 42371 ncRNA 74528 Mm.386817 NM_028984 ENSMUSG00000027424 Mgme1 8430406I07Rik|AI426476 - 2|2 G1 mitochondrial genome maintenance exonuclease 1 protein-coding 319627 A630035D09Rik - - 2|2 RIKEN cDNA A630035D09 gene protein-coding 105242483 LOC105242483 - - - C-C motif chemokine 8 protein-coding 212108 Mm.261583 NM_173184 ENSMUSG00000045232 Rln3 M3|insl7 - 8|8 C2 relaxin 3 protein-coding 22755 Mm.383535 NM_009567 ENSMUSG00000055305 Zfp93 Znf235 - 7 A3|7 10.27 cM zinc finger protein 93 protein-coding 69008 Mm.179091 NM_026908 ENSMUSG00000021981 Cab39l 1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L - 14|14 C3 calcium binding protein 39-like protein-coding 12741 Mm.22768 NM_013805 ENSMUSG00000041378 Cldn5 AI854493|MBEC1|Tmvcf - 16 A3|16 11.63 cM claudin 5 protein-coding 102639665 XR_386750 Gm35923 - - 19 C3|19 predicted gene, 35923 ncRNA 14664 Mm.244549 NM_008135 ENSMUSG00000028542 Slc6a9 Glyt-1|Glyt1 - 4 D2.1|4 53.62 cM solute carrier family 6 (neurotransmitter transporter, glycine), member 9 protein-coding 102639731 LOC102639731 - - 8 A4 dynein light chain 1, cytoplasmic-like pseudo 105243220 XR_878937 Gm39199 - - 8 C1|8 predicted gene, 39199 ncRNA 100039060 Mm.289463 NM_001177543 ENSMUSG00000078886 0610010B08Rik Gm2026 - 2|2 H4 RIKEN cDNA 0610010B08 gene protein-coding 100036451 Pbwg22 - - - postnatal body weight growth 22 unknown 21072 T(12;17)4Rk T4Rk - - reciprocal translocation, Chr 12 and 17, Roderick 4 other 211329 Mm.297903 NM_172495 ENSMUSG00000039697 Ncoa7 9030406N13Rik - 10|10 A4 nuclear receptor coactivator 7 protein-coding 68755 Mm.343809 NM_026832 ENSMUSG00000055128 Cgrrf1 1110038G02Rik|1810009H17Rik|CGR19 - 14|14 C1 cell growth regulator with ring finger domain 1 protein-coding 12399 Mm.378894 NM_019732 ENSMUSG00000070691 Runx3 AML2|Cbfa3|Pebp2a3 - 4 D3|4 67.19 cM runt related transcription factor 3 protein-coding 230119 Mm.44222 NM_173399 ENSMUSG00000049657 Zbtb5 5930421I10|9430083K24Rik|AI646847|mKIAA0354 - 4|4 B1 zinc finger and BTB domain containing 5 protein-coding 105244201 XR_866446 Gm39851 - - 2 C3|2 predicted gene, 39851 ncRNA 69076 Mm.27951 NM_026933 ENSMUSG00000029535 Triap1 1810015M01Rik|AU020874|AU043831|P53csv|Wf-1 - 5|5 F TP53 regulated inhibitor of apoptosis 1 protein-coding 13261 Del(10)2H Del2H - - deletion, Chr 10, Harwell 2 other 16264 In(2)19Rk-p In(2)19Rk|In19Rk - - inversion, Chr 2, Roderick 19, proximal other 436576 M-01983 - - - DNA segment, M-01983 unknown 100861631 Gm21089 - - 9 A1|9 predicted gene, 21089 pseudo 73187 XM_017319868 3110067G11Rik - - 3 H3|3 RIKEN cDNA 3110067G11 gene protein-coding 664846 Gm7366 EG664846 - 16|16 C1.3 high mobility group box 1-like pseudogene pseudo 116813 Angle5 Angle-5 - - angle of entrainment 5 unknown 105244056 XR_865874 Gm39738 - - 1 H6|1 predicted gene, 39738 ncRNA 105247280 XR_882307 Gm42407 - - X A5|X predicted gene, 42407 ncRNA 102637501 XR_375173 Gm34293 - - 2 H1|2 predicted gene, 34293 ncRNA 105244524 XR_867545 Gm40118 - - 3 F2.2|3 predicted gene, 40118 ncRNA 497113 Mm.379741 NM_001011877 ENSMUSG00000059648 Rnase11 Raj1 - 14|14 C1 ribonuclease, RNase A family, 11 (non-active) protein-coding 723928 NR_030405 ENSMUSG00000065447 Mir302d Mirn302d|mir-302d - 3|3 G2 microRNA 302d ncRNA 546840 Mm.331755 NM_001081272 ENSMUSG00000070877 Ldlrad1 - - 4|4 C7 low density lipoprotein receptor class A domain containing 1 protein-coding 20256 Mm.20428 NM_009131 ENSMUSG00000004473 Clec11a AW457320|Clecsf3|Scgf - 7|7 B3 C-type lectin domain family 11, member a protein-coding 100416275 Gm18016 - - 9|9 E3.1 ribosomal protein L5 pseudogene pseudo 73665 2210037E17Rik AV077453 - - RIKEN cDNA 2210037E17 gene protein-coding 231991 Mm.227444 NM_172728 ENSMUSG00000053007 Creb5 9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik - 6 B3|6 25.9 cM cAMP responsive element binding protein 5 protein-coding 100417214 Gm15116 - - 7|7 E3 crumbs homolog 1 pseudogene pseudo 100039357 Gm20802 - - Y|Y predicted gene, 20802 pseudo 100043767 Mm.134086 XR_384886 Gm4633 - - 16 B5|16 predicted gene 4633 unknown 20869 Mm.44231 NM_011492 ENSMUSG00000003068 Stk11 AA408040|Lkb1|Par-4|R75140 - 10|10 C1 serine/threonine kinase 11 protein-coding 61504 D8Mit106 - - 8 39.59 cM DNA segment, Chr 8, Massachusetts Institute of Technology 106 unknown 99462 Mm.403750 BB182164 - - - expressed sequence BB182164 protein-coding 102633937 XR_379093 Gm31639 - - 9 A1|9 predicted gene, 31639 ncRNA 102467239 n-TAcgc10 n-Ta29 - 13 A3.1|13 nuclear encoded tRNA alanine 10 (anticodon CGC) tRNA 102635342 LOC102635342 - - - uncharacterized LOC102635342 ncRNA 231051 Mm.332268 NM_001081383 ENSMUSG00000038056 Kmt2c E330008K23Rik|HALR|Mll3|mKIAA1506 - 5|5 A3-B1 lysine (K)-specific methyltransferase 2C protein-coding 13495 Mm.41803 NM_021354 ENSMUSG00000020537 Drg2 AI255295|AI461605|DRG-2 - 11 B2|11 37.81 cM developmentally regulated GTP binding protein 2 protein-coding 100303649 Gm11025 - - 12|12 C1 serum/glucocorticoid regulated kinase 1 pseudogene pseudo 106719 AU022490 AU022493 - - expressed sequence AU022490 protein-coding 105245055 Gm40563 - - 12|12 predicted gene, 40563 ncRNA 320595 Mm.17156 NM_177201 ENSMUSG00000041229 Phf8 9830141C09Rik|mKIAA1111 - X|X F3 PHD finger protein 8 protein-coding 258453 Mm.271380 NM_146461 ENSMUSG00000075113 Olfr1209 MOR230-7 - 2|2 E1 olfactory receptor 1209 protein-coding 320350 8030450B20Rik - - 12|12 RIKEN cDNA 8030450B20 gene protein-coding 102638478 Mm.329276 Gm35031 - - 18|18 predicted gene, 35031 ncRNA 100416769 Gm14665 - - X|X A6 NudC domain containing 2 pseudogene pseudo 105246860 XR_879796 Gm42071 - - 11 A4|11 predicted gene, 42071 ncRNA 227634 Mm.36834 NM_001115076 ENSMUSG00000026933 Camsap1 9530003A05Rik|C77823|PRO2405 - 2|2 A3 calmodulin regulated spectrin-associated protein 1 protein-coding 105244800 XR_868595 Gm40347 - - 5 G2|5 predicted gene, 40347 ncRNA 105244365 XR_879914 Gm39988 - - 11 B2|11 predicted gene, 39988 ncRNA 74220 Mm.490521 NR_046040 ENSMUSG00000101404 1700009C05Rik - - 6|6 C3 RIKEN cDNA 1700009C05 gene ncRNA 13090 Mm.14098 NM_007814 ENSMUSG00000066704 Cyp2b19 CYPIIB19 - 7 A3|7 15.44 cM cytochrome P450, family 2, subfamily b, polypeptide 19 protein-coding 258339 Mm.377440 NM_146342 ENSMUSG00000084336 Olfr1269 MOR228-3 - 2|2 E1 olfactory receptor 1269 protein-coding 18807 Mm.6483 NM_011116 ENSMUSG00000003363 Pld3 Sam-9 - 7|7 A3 phospholipase D family, member 3 protein-coding 330010 Mm.440232 NM_029264 ENSMUSG00000029074 Ttll10 4833412E22Rik|4930595O22Rik|AU022799|BC042775|Ttll5 - 4|4 E2 tubulin tyrosine ligase-like family, member 10 protein-coding 224893 Mm.294853 NM_145490 ENSMUSG00000003198 Zfp959 - - 17|17 D zinc finger protein 959 protein-coding 105245000 XR_870673 Gm40515 - - 9 A5.1|9 predicted gene, 40515 ncRNA 723952 NR_029540 ENSMUSG00000065472 Mir125b-2 Mirn125b-2|mir-125b-2 - 16|16 C3.1 microRNA 125b-2 ncRNA 105247053 Gm42229 - - 5|5 predicted gene, 42229 ncRNA 102637422 XR_390698 Gm34232 - - 4 C4|4 predicted gene, 34232 ncRNA 70055 Mm.261063 NR_040592 ENSMUSG00000099508 1700030L20Rik - - 3|3 G3 RIKEN cDNA 1700030L20 gene ncRNA 101565 Mm.23279 NM_182995 ENSMUSG00000033904 Ccp110 6330503K22Rik|AA415922|AI427129|AW557948|CP110|cep110 - 7|7 F2 centriolar coiled coil protein 110 protein-coding 20017 Mm.259078 NM_009086 ENSMUSG00000027395 Polr1b 128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2 - 2|2 F1 polymerase (RNA) I polypeptide B protein-coding 102638606 Gm35132 - - 19|19 predicted gene, 35132 ncRNA 70858 Mm.410838 NR_045829 ENSMUSG00000114136 4921511I17Rik - - 12|12 A1.1 RIKEN cDNA 4921511I17 gene ncRNA 100040714 XM_011249880 Gm20851 - - Y|Y A1 predicted gene, 20851 protein-coding 105246194 Mm.149315 Gm28505 - - 17|17 predicted gene 28505 ncRNA 14453 Mm.207360 NM_008087 ENSMUSG00000030498 Gas2 Gas-2 - 7 B4|7 32.87 cM growth arrest specific 2 protein-coding 110120541 LOC110120541 - - - VISTA enhancer mm1502 biological-region 99522 Mm.27975 AA672641 - - - expressed sequence AA672641 protein-coding 100416804 Gm18265 - - 13|13 C3 PDZ domain containing 1 pseudogene pseudo 246189 L1Md-Gf13 GF13 - - L1 repeat, Gf subfamily, member 13 other 320238 A830054O07Rik - - 1|1 RIKEN cDNA A830054O07 gene protein-coding 62714 D18Mit104 - - 18 22.08 cM DNA segment, Chr 18, Massachusetts Institute of Technology 104 unknown 170484 Mm.289099 NM_130456 ENSMUSG00000026602 Nphs2 PDCN|SRN1 - 1|1 G3 nephrosis 2, podocin protein-coding 108167907 LOC108167907 - - 11 B3 40S ribosomal protein S15a pseudogene pseudo 108169145 XR_001785257 Gm44026 - - 6 B3|6 predicted gene, 44026 ncRNA 108168794 XR_001783473 Gm46765 - - 2 F1|2 predicted gene, 46765 ncRNA 102635534 Mm.65435 XR_379795 ENSMUSG00000099722 Gm29154 - - 9 F1|9 predicted gene 29154 ncRNA 226442 Mm.62521 NM_177643 ENSMUSG00000041483 Zfp281 Znf281 - 1|1 E4 zinc finger protein 281 protein-coding 258778 Mm.223209 NM_146782 ENSMUSG00000049926 Olfr921 MOR165-8 - 9|9 A5.1 olfactory receptor 921 protein-coding 67463 Mm.86472 NM_026173 ENSMUSG00000021671 Poc5 1200014M14Rik|AV144706 - 13|13 D1 POC5 centriolar protein protein-coding 60936 DXMit28 - - X 73.67 cM DNA segment, Chr X, Massachusetts Institute of Technology 28 unknown 102633541 LOC102633541 - - 11 B5 39S ribosomal protein L27, mitochondrial pseudogene pseudo 102632635 Mm.375195 XR_001778628 Gm26843 - - 8 C5|8 predicted gene, 26843 protein-coding 100502625 Gm19293 - - 18 A1|18 6.15 cM Friend of PRMT1 protein-like pseudo 432480 Mm.280394 NM_001255990 ENSMUSG00000094186 Gm1553 Lcrn - 10|10 C1 predicted gene 1553 protein-coding 102636230 Gm33358 - - 17|17 predicted gene, 33358 protein-coding 61931 D5Mit367 - - 5 60.43 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 367 unknown 619991 Mm.483167 NM_001114754 ENSMUSG00000080725 Gm6121 - - X A2|X predicted gene 6121 protein-coding 74424 Mm.11068 NM_028930 ENSMUSG00000030650 Tmc5 4932443L08Rik|AU016085 - 7|7 F2 transmembrane channel-like gene family 5 protein-coding 105243590 Mm.390491 LOC105243590 IgH|Igg1 - - Ig heavy chain Mem5-like protein-coding 258854 Mm.377722 NM_146855 ENSMUSG00000049073 Olfr985 MOR171-4 - 9|9 A5.1 olfactory receptor 985 protein-coding 545911 Gm5888 EG545911 - 7|7 A1 ring finger protein 127 pseudogene pseudo 100417234 Gm18473 - - 13|13 B1 ribosomal protein, large, P0 pseudogene pseudo 62169 D14Mit67 - - 14 38.82 cM DNA segment, Chr 14, Massachusetts Institute of Technology 67 unknown 192187 Mm.220821 NM_138672 ENSMUSG00000042286 Stab1 FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246 - 14|14 B stabilin 1 protein-coding 402724 A330106F07Rik - - 2|2 RIKEN cDNA A330106F07 gene protein-coding 102634442 XR_380518 Gm32023 - - 10 B5.1|10 predicted gene, 32023 ncRNA 100417771 Gm18815 - - 15|15 E3 predicted gene, 18815 pseudo 105243934 XR_865454 Gm39648 - - 1 C2|1 predicted gene, 39648 ncRNA 69807 Mm.22786 NM_053084 ENSMUSG00000051675 Trim32 1810045E12Rik|3f3|BBS11|Zfp117 - 4 C1|4 34.43 cM tripartite motif-containing 32 protein-coding 114319 Taste11 - - 9 42.65 cM taste bitterness sensitivity 11 unknown 224904 Mm.34002 NM_153152 ENSMUSG00000049760 2410015M20Rik Mic13|QIL1|sr104 - 17|17 D RIKEN cDNA 2410015M20 gene protein-coding 670495 Gm9488 - - X|X A3.3 predicted gene 9488 pseudo 105243179 XR_870416 Gm39170 - - 8 B1.1|8 predicted gene, 39170 ncRNA 407788 Mm.73205 NM_001001177 ENSMUSG00000057246 BC051142 NG8|TSBP|Tesb|Tesbp - 17 18.0 cM|17 B1 cDNA sequence BC051142 protein-coding 102634013 XR_379791 Gm31701 - - 9 F1|9 predicted gene, 31701 ncRNA 545955 Gm5896 EG545955 - 7|7 B3 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 100502762 Gm12217 - - 11|11 32.02 cM cell division protein kinase 4-like pseudo 105245610 XR_873869 Gm41040 - - 13 D1|13 predicted gene, 41040 ncRNA 67551 Mm.71906 4933409L14Rik - - 7|7 RIKEN cDNA 4933409L14 gene protein-coding 21116 T(2;14)1Gso T1Gso - - reciprocal translocation, Chr 2 and 14, Generoso 1 other 114350 Skl2 - - - skeletal size (tail length) 2 unknown 100417437 Gm2988 100040829 - 3|3 H4 voltage-dependent anion channel 1 pseudogene pseudo 14843 Mm.218752 NM_133256 ENSMUSG00000035946 Gsx2 Gsh-2|Gsh2 - 5 C3.3|5 39.55 cM GS homeobox 2 protein-coding 319581 Mm.111354 NM_176951 ENSMUSG00000039814 Xkr5 5430438H03Rik|XRG5 - 8|8 A1.3 X-linked Kx blood group related 5 protein-coding 108167836 XR_001779863 Gm46244 - - 1 E2.2|1 predicted gene, 46244 ncRNA 666430 Gm8100 EG666430 - 8|8 A2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 20379 Mm.42095 NM_016687 ENSMUSG00000021319 Sfrp4 - - 13 A2|13 6.99 cM secreted frizzled-related protein 4 protein-coding 98498 C130098C10Rik AL024091 - - RIKEN cDNA C130098C10 gene protein-coding 69534 Mm.30060 NM_027106 ENSMUSG00000018821 Avpi1 2310008N12Rik|AA410041|VIT32|esu|mVIT32 - 19|19 C3 arginine vasopressin-induced 1 protein-coding 66225 Mm.291755 NM_025431 ENSMUSG00000020224 Llph 1190005P17Rik - 10|10 D2 LLP homolog, long-term synaptic facilitation (Aplysia) protein-coding 106549 Mm.435678 AI317158 - - - expressed sequence AI317158 protein-coding 75822 Mm.410813 NR_045661 ENSMUSG00000115320 4930524C18Rik - - 14|14 E4 RIKEN cDNA 4930524C18 gene ncRNA 78592 Mm.448880 A330106M24Rik - - 17|17 RIKEN cDNA A330106M24 gene protein-coding 102640697 XR_382833 Gm36703 - - 13 D1|13 predicted gene, 36703 ncRNA 102635783 Mm.41666 NR_137202 Gm11266 - - 4|4 C3 predicted gene 11266 ncRNA 330738 Mm.128075 NR_151736 ENSMUSG00000109704 Gm38414 A230084N10|Gm45568 - 8|8 A4 predicted gene, 38414 ncRNA 102633299 Gm28815 - - Y|Y predicted gene 28815 ncRNA 11652 Mm.177194 NM_007434 ENSMUSG00000004056 Akt2 2410016A19Rik|AW554154|PKB|PKBbeta - 7 A3|7 15.94 cM thymoma viral proto-oncogene 2 protein-coding 213788 Mm.297624 NM_205783 ENSMUSG00000074939 Chrm5 AChR-M5|M5R|m5 - 2 E3|2 57.02 cM cholinergic receptor, muscarinic 5 protein-coding 107980435 L1Md-A101 pORF1|pORF2 - - L1 element, subfamily A, member 101 other 56046 Mm.158827 NM_018888 ENSMUSG00000005882 Uqcc1 2310079L17Rik|2410003P15Rik|3110038N19Rik|Bfzb|Bfzp|Cbp3|Uqcc - 2|2 H1 ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 11640 Mm.2969 NM_009648 ENSMUSG00000018428 Akap1 AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84 - 11|11 C A kinase (PRKA) anchor protein 1 protein-coding 21315 T(X;7)1Neu T1Neu - - reciprocal translocation, Chr X and 7, Neuhauser-Klaus 1 other 27902 D16Ium63 - - 16 39.09 cM DNA segment, Chr 16, Indiana University Medical 63 unknown 547330 Trav14-3 Gm13933 - 14|14 C2 T cell receptor alpha variable 14-3 other 360084 D17Jcs37 - - - DNA segment, Chr 17, John C. Schimenti 37 unknown 668181 Ncf2-rs EG668181|Gm1820|Gm9025|Ncf-2rs - 13 D2.2|13 neutrophil cytosolic factor 2 related sequence pseudo 75244 4930553I04Rik - - 5|5 RIKEN cDNA 4930553I04 gene protein-coding 100039766 Gm16510 - - 2|2 C2 predicted pseudogene 16510 protein-coding 359909 DXMgc50 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 50 unknown 212442 Mm.89572 NM_145381 ENSMUSG00000025937 Lactb2 Cgi-83|E430032H21Rik - 1|1 A3 lactamase, beta 2 protein-coding 227289 Mm.246587 NM_174985 ENSMUSG00000064272 Gpbar1 BG37|GPCR|GPR131|M-BAR|TGR5 - 1 C3|1 38.53 cM G protein-coupled bile acid receptor 1 protein-coding 258517 Mm.377548 NM_146524 ENSMUSG00000043087 Olfr855 MOR148-1 - 9|9 A3 olfactory receptor 855 protein-coding 100502910 Gm19449 - - 13|13 50.13 cM predicted gene, 19449 pseudo 109280046 LOC109280046 Mm384 - - VISTA enhancer mm384 biological-region 62897 D10Mit231 - - 10 45.48 cM DNA segment, Chr 10, Massachusetts Institute of Technology 231 unknown 19682 Mm.439856 NM_134006 ENSMUSG00000025350 Rdh5 9-cis|AI987873|RDH4|cRDH - 10 D3|10 77.19 cM retinol dehydrogenase 5 protein-coding 109430 Gvhd2 - - 4 82.64 cM graft-versus-host disease 2 unknown 226075 Mm.223508 NM_175459 ENSMUSG00000052942 Glis3 4833409N03Rik|E330013K21Rik - 19|19 C1 GLIS family zinc finger 3 protein-coding 103919 Ty - - - trembly unknown 667743 Gm8789 EG667743 - 19|19 B heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 105243909 Gm39629 - - 1|1 predicted gene, 39629 ncRNA 69134 Mm.27156 NM_183278 ENSMUSG00000043681 Fam25c 2200001I15Rik|Fam25 - 14|14 B family with sequence similarity 25, member C protein-coding 67278 Mm.345385 NM_030240 ENSMUSG00000107068 Pagr1a 2900092E17Rik|C77040|PA1|PAGR1 - 7|7 F3 PAXIP1 associated glutamate rich protein 1A protein-coding 70843 Mm.180256 NM_027574 ENSMUSG00000055937 Krt28 4733401L19Rik|Krt25d - 11|11 D keratin 28 protein-coding 664945 Gm7416 EG664945 - X E1|X methionine aminopeptidase 2 pseudogene pseudo 97576 R75110 - - - expressed sequence R75110 unknown 100113458 Secia8 - - - small effect CIA locus 8 unknown 666114 XR_001782409 Gm7936 EG666114 - 18|18 B1 predicted pseudogene 7936 unknown 17725 mt-Rnr2 - - - 16S ribosomal RNA rRNA 105246362 Gm41661 - - 18|18 predicted gene, 41661 ncRNA 100124488 NR_030609 ENSMUSG00000077897 Mir511 Mirn511|mir-511|mmu-mir-511 - 2 A2|2 microRNA 511 ncRNA 102635398 LOC102635398 - - 7 B1 60S ribosomal protein L23a pseudogene pseudo 102638949 XR_377334 Gm35384 - - 6 A1|6 predicted gene, 35384 ncRNA 66195 Mm.158107 NM_025413 ENSMUSG00000027919 Lce1g 1110058A15Rik|AI604448 - 3|3 F1 late cornified envelope 1G protein-coding 67635 Mm.402052 4930458B22Rik - - 7|7 RIKEN cDNA 4930458B22 gene protein-coding 228019 Mm.490343 NM_145524 ENSMUSG00000041975 Mettl8 BC004636|Tip - 2|2 C2 methyltransferase like 8 protein-coding 100039133 NM_001170345 Gm2058 EyeLinc15 - 7|7 B3 ubiquitin-conjugating enzyme E2H pseudogene pseudo 102638956 XR_388849 Gm35391 - - 11 B5|11 predicted gene, 35391 ncRNA 102637050 Gm33957 - - 4|4 predicted gene, 33957 ncRNA 17960 Mm.14125 NM_008673 ENSMUSG00000025588 Nat1 Nat-1 - 8 B3.2|8 33.38 cM N-acetyl transferase 1 protein-coding 93944 D16Jhu83e 186E16.T7 - - DNA segment, Chr 16, Johns Hopkins University 83, expressed protein-coding 109809 H23 H-23 - - histocompatibility 23 protein-coding 665660 Gm12011 - - 11|11 A2 predicted gene 12011 pseudo 258526 Mm.377553 NM_146533 ENSMUSG00000045508 Olfr1367 MOR256-16|MOR256-65 - 13|13 A3.1 olfactory receptor 1367 protein-coding 111263 Snrp1a-rs4 - - - U1 small nuclear ribonucleoprotein 1A, related sequence 4 pseudo 28180 D16Ium29e D16Ium29|D16Ium4|D16Ium4e - - DNA segment, Chr 16, Indiana University Medical 29, expressed unknown 100035585 Espq3 - - - embryo survival preimplantation QTL 3 unknown 111992 Cq3 Chol5 - 3 44.3 cM cholesterol QTL 3 unknown 108168275 LOC108168275 - - 16 C3.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100040234 Gm2676 - - 8 A1.1|8 high mobility group protein 1 pseudogene pseudo 108168768 XR_001783333 Gm46747 - - 2 C3|2 predicted gene, 46747 ncRNA 93671 Mm.37426 NM_053094 ENSMUSG00000008845 Cd163 CD163v2|CD163v3 - 6|6 F2 CD163 antigen protein-coding 102631777 XR_878711 Gm30028 - - 5 F|5 predicted gene, 30028 ncRNA 320307 B230217J21Rik - - 12|12 RIKEN cDNA B230217J21 gene protein-coding 100035176 Cia40 - - 11 32.13 cM collagen induced arthritis QTL 40 unknown 100039257 Mm.33344 NM_001270495 ENSMUSG00000021867 Tmem254b Gm9746 - 14 A3|14 transmembrane protein 254b protein-coding 209692 Mm.222517 NM_001081131 ENSMUSG00000025815 Dhtkd1 C330018I04Rik - 2|2 A1 dehydrogenase E1 and transketolase domain containing 1 protein-coding 76443 Mm.58131 XR_865459 2310016D23Rik - - 1|1 C2 RIKEN cDNA 2310016D23 gene ncRNA 100043123 NM_001101656 ENSMUSG00000069609 Cd300ld4 Gm11710 - 11|11 E2 CD300 molecule like family member D4 protein-coding 105244082 XR_865973 Gm39759 - - 2 A1|2 predicted gene, 39759 ncRNA 102640211 Gm36334 - - 2|2 predicted gene, 36334 ncRNA 320908 Mm.311655 E430014B02Rik - - 17|17 RIKEN cDNA E430014B02 gene protein-coding 52770 D9Wsu191e - - - DNA segment, Chr 9, Wayne State University 191, expressed unknown 195434 Mm.276016 NM_001001981 ENSMUSG00000079470 Utp14b 4932411L21Rik|jsd - 1 C4|1 40.84 cM UTP14B small subunit processome component protein-coding 100462931 Gm13588 - - 2 B|2 24.4 cM thymosin, beta 10 pseudogene pseudo 100502921 Mm.486156 NM_001205035 ENSMUSG00000094146 Gm10142 - - 10 C1|10 39.72 cM predicted gene 10142 protein-coding 493098 Lipq2 - - 13 39.64 cM lipoprotein QTL 2 unknown 53418 Mm.123843 NM_017377 ENSMUSG00000028541 B4galt2 Ggtb2 - 4|4 D2.1 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 protein-coding 110319 Tcrb-V8 - - - T cell receptor beta, variable 8 other 100861850 Gm21268 - - Y|Y predicted gene, 21268 protein-coding 628042 Rpl18a-ps3 EG628042|Gm6830 - 6 C1|6 ribosomal protein L18A, pseudogene 3 pseudo 52392 Mm.12309 NM_133825 ENSMUSG00000044768 D1Ertd622e AI987691|AW047450 - 1 D|1 47.76 cM DNA segment, Chr 1, ERATO Doi 622, expressed protein-coding 66585 Mm.423019 NM_025645 ENSMUSG00000074088 Snrnp40 0610009C03Rik|Prp8bp|Wdr57 - 4|4 D2.2 small nuclear ribonucleoprotein 40 (U5) protein-coding 108500 Mpmv10 Mpmv-10 - - modified polytropic murine leukemia virus 10 other 219151 Mm.344095 NM_172604 ENSMUSG00000034463 Scara3 APC7|C130058N24Rik|CSR|CSR1|MSLR1|MSRL1 - 14|14 D1 scavenger receptor class A, member 3 protein-coding 102465762 NR_106114 ENSMUSG00000098917 Mir7654 Gm27748|mmu-mir-7654 - 8|8 A1.1 microRNA 7654 ncRNA 76660 Mm.76914 1700121L03Rik - - 1|1 RIKEN cDNA 1700121L03 gene protein-coding 105245415 XR_001780886 LOC105245415 - - 13 A3.2 uncharacterized LOC105245415 ncRNA 12797 Mm.4356 NM_009922 ENSMUSG00000001349 Cnn1 CN|CnnI - 9|9 A3 calponin 1 protein-coding 66335 Mm.276618 NM_025494 ENSMUSG00000022295 Atp6v1c1 1700025B18Rik|U13839 - 15|15 B3.1 ATPase, H+ transporting, lysosomal V1 subunit C1 protein-coding 622268 Gm6304 EG622268 - 18|18 A1 mitochondrial ribosomal protein L27 pseudogene pseudo 102635040 Gm15637 - - 5|5 62.13 cM predicted gene 15637 ncRNA 102636312 XR_390965 Gm33415 - - 4 E2|4 predicted gene, 33415 ncRNA 72667 Mm.274089 NM_028316 ENSMUSG00000044876 Zfp444 2810031J10Rik|6230401O10Rik|mFLJ00134 - 7|7 A1 zinc finger protein 444 protein-coding 70511 Mm.45780 NM_027446 ENSMUSG00000022544 Eef2kmt 5730409G15Rik|Fam86|Fam86a|eEF2-KMT - 16 A1|16 2.51 cM eukaryotic elongation factor 2 lysine methyltransferase protein-coding 27083 Mm.104764 NM_021365 ENSMUSG00000067768 Xlr4b Xlr4 - X A7.3|X 37.29 cM X-linked lymphocyte-regulated 4B protein-coding 102638974 XR_381280 Gm24208 - - 12 A1.1|12 predicted gene, 24208 ncRNA 110132 Rmv1 Rmv-1 - - resistance to Moloney virus 1 protein-coding 16615 Mm.440887 NM_008454 ENSMUSG00000038968 Klk1b16 Klk16|mGk-16 - 7 B3|7 28.64 cM kallikrein 1-related peptidase b16 protein-coding 112276 Sluc11 - - 9 52.24 cM susceptibility to lung cancer 11 unknown 100041237 Nudc-ps1 AL022907|Gm3223 - 8 A2|8 nuclear distribution gene C homolog (Aspergillus), pseudogene 1 pseudo 51822 D17Tu42 - - - DNA segment, Chr 17, Tubingen 42 unknown 102639841 Mm.381587 XR_377838 Gm26588 - - 6 D1|6 predicted gene, 26588 ncRNA 105244279 XR_866692 Gm39919 - - 2 E5|2 predicted gene, 39919 ncRNA 108167605 LOC108167605 - - 1 G1 ribosomal protein L22 like 1 pseudogene pseudo 85135 DXMit155 - - X 67.49 cM DNA segment, Chr X, Massachusetts Institute of Technology 155 unknown 62931 D10Mit269 - - 10 77.2 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 269 unknown 14314 Mm.182434 NM_008047 ENSMUSG00000022816 Fstl1 AI316791|AW107808|Fstl|TSC-36 - 16 B3|16 26.48 cM follistatin-like 1 protein-coding 19646 Mm.12145 NM_009030 ENSMUSG00000057236 Rbbp4 RBAP48|mRbAp48 - 4|4 D2.2 retinoblastoma binding protein 4, chromatin remodeling factor protein-coding 112342 Cara2 - - - carcass ash in high growth mice 2 unknown 102640580 XR_001785437 Gm36610 - - 6 C1|6 predicted gene, 36610 ncRNA 62527 D11Mit151 - - 11 15.29 cM DNA segment, Chr 11, Massachusetts Institute of Technology 151 unknown 381651 Mm.332494 NM_001177577 ENSMUSG00000096035 Odaph Gm1045|Gm1045-a|Gm1045-b - 5|5 E2 odontogenesis associated phosphoprotein protein-coding 111894 Iap5rc3 - - - intracisternal A-type particle, U5 region, SINE repeat c-3 other 102636262 Mm.421168 NR_155535 Gm20544 - - 18 E3|18 51.06 cM predicted gene 20544 ncRNA 104083 Bfo - - - bell flash ovulation unknown 619314 Mm.145928 NR_045946 ENSMUSG00000110909 B020014A21Rik - - 10 A1|10 RIKEN cDNA B020014A21 gene ncRNA 544960 Mm.316393 Gm29680 - - 13|13 C3 predicted gene, 29680 ncRNA 258169 Olfr625-ps1 MOR31-15P - 7|7 E3 olfactory receptor 625, pseudogene 1 pseudo 669207 Gm12109 - - 11|11 A4 predicted gene 12109 pseudo 102467256 n-TNgtt5 n-Tn5 - 3 F2.1|3 nuclear encoded tRNA asparagine 5 (anticodon GTT) tRNA 102637888 XR_387339 Gm34584 - - 1 E2.3|1 predicted gene, 34584 ncRNA 666607 Gm8185 EG666607 - 13 C1|13 chromatin modifying protein 2A pseudogene pseudo 625305 Gm6574 EG625305 - 7|7 E3 predicted gene 6574 pseudo 62165 D14Mit63 - - 14 28.19 cM DNA segment, Chr 14, Massachusetts Institute of Technology 63 unknown 102633638 XR_867405 Gm31419 - - 3 F1|3 predicted gene, 31419 ncRNA 102636476 XR_373319 Gm33533 - - 1 B|1 predicted gene, 33533 ncRNA 102640990 XR_392164 ENSMUSG00000100167 Gm28207 CH36-337P22.1 - Y C2|Y predicted gene 28207 ncRNA 102636846 XR_385579 Gm33802 - - 17 B1|17 predicted gene, 33802 ncRNA 210530 Mm.326869 NM_173379 ENSMUSG00000038168 P3h2 4832416N06|AW553532|Leprel1|Mlat4 - 16|16 B1 prolyl 3-hydroxylase 2 protein-coding 102636173 Gm21880 - - Y|Y predicted gene, 21880 protein-coding 104180 Zfp56 Zfp-56|zfec4 - - zinc finger protein 56 protein-coding 100526466 NR_037220 ENSMUSG00000093080 Mir3060 mir-3060|mmu-mir-3060 - 11 A1|11 2.9 cM microRNA 3060 ncRNA 622708 Mm.389210 NR_151590 ENSMUSG00000096964 Gm6345 EG622708 - 1|1 H3 predicted gene 6345 pseudo 97238 C79491 - - - expressed sequence C79491 protein-coding 102632319 LOC102632319 - - 11 A1 prothymosin alpha-like pseudo 777654 Ighj2 Gm16879 - 12|12 F1 immunoglobulin heavy joining 2 other 12321 Mm.392075 NM_007594 ENSMUSG00000029767 Calu 9530075H20Rik - 6|6 A3.3 calumenin protein-coding 102634726 XR_387294 Gm29012 - - 1 E2.1|1 predicted gene 29012 ncRNA 100035410 Chlq15 - - - circulating hormone level QTL 15 unknown 111808 Iapls1-32 - - - intracisternal A particle, lymphocyte specific 1-32 other 100041013 Gm3096 - - 9|9 E4 brain expressed X-linked 2 pseudogene pseudo 75237 Mm.417816 XR_387867 4930535O05Rik - - 8|8 C3 RIKEN cDNA 4930535O05 gene ncRNA 78088 Mm.245085 NM_175270 ENSMUSG00000045314 Sowahb 5730467H21Rik|Ankrd56 - 5|5 E2 sosondowah ankyrin repeat domain family member B protein-coding 102634992 Mm.398326 XR_386823 Gm32441 - - 19 D2|19 predicted gene, 32441 ncRNA 108405 Srev18 Srev-18 - - SWR/J-RF/J ecotropic provirus 18 other 100039319 Mm.469831 NM_001102665 ENSMUSG00000067441 H2afb1 Gm14920|Gm1539|H2A.B.3|H2A.Bbd1|H2A.Lap1 - X|X E1 H2A histone family member B1 protein-coding 665630 Gm12390 - - 4|4 A5 predicted gene 12390 pseudo 19896 Mm.336955 NM_011287 ENSMUSG00000037805 Rpl10a CsA-19|Nedd6 - 17|17 A3.3 ribosomal protein L10A protein-coding 381933 Mm.440431 NM_001033465 ENSMUSG00000073795 6430531B16Rik Gm1093 - 7|7 F4 RIKEN cDNA 6430531B16 gene protein-coding 620155 Mm.391139 Gm6133 EG620155 - 18|18 E3 60S ribosomal protein L17 pseudogene pseudo 100416077 Gm17908 - - 7|7 C sorting nexin 4 pseudogene pseudo 641178 Ighv5-9-1 Gm16886 - 12|12 F1 immunoglobulin heavy variable 5-9-1 other 234404 Mm.213208 NM_145598 ENSMUSG00000034829 Nxnl1 A930031O08Rik|RdCVF|Txnl6 - 8|8 B3.3 nucleoredoxin-like 1 protein-coding 102641383 Mm.421274 LOC102641383 - - - uncharacterized LOC102641383 ncRNA 242707 Mm.448979 NM_001243262 ENSMUSG00000070683 Lactbl1 - - 4|4 D3 lactamase, beta-like 1 protein-coding 14676 Mm.1546 NM_010304 ENSMUSG00000034792 Gna15 G[a]15|Galpha15 - 10 C1|10 39.72 cM guanine nucleotide binding protein, alpha 15 protein-coding 104158 Mm.292803 NM_053200 ENSMUSG00000056973 Ces1d Ces3|TGH - 8|8 C5 carboxylesterase 1D protein-coding 223626 Mm.268603 NM_198607 ENSMUSG00000056665 Them6 4930572J05Rik - 15|15 D3 thioesterase superfamily member 6 protein-coding 12865 Mm.423030 NM_009944 ENSMUSG00000074218 Cox7a1 COX7A|COX7AH|COX7AM - 7 B1|7 17.31 cM cytochrome c oxidase subunit VIIa 1 protein-coding 621458 Rpl23a-ps6 Gm12373 - 4|4 A5 ribosomal protein 23A, pseudogene 6 pseudo 751534 NR_030525 ENSMUSG00000076398 Mir676 Mirn676|mir-676|mmu-mir-676 - X C3|X microRNA 676 ncRNA 57741 Mm.423051 NM_021303 ENSMUSG00000095567 Noc2l AA410003|AF155546|NIR - 4|4 E2 NOC2 like nucleolar associated transcriptional repressor protein-coding 17299 Mm.251593 NM_010792 ENSMUSG00000006732 Mettl1 2810012D02Rik - 10|10 D3 methyltransferase like 1 protein-coding 100035499 Kwq13 Kwq7 - - kidney weight QTL 13 unknown 112158 Faq3 - - - fluctuating asymmetry QTL 3 unknown 269615 Mm.379458 NM_175556 ENSMUSG00000029055 Plch2 A930027K05Rik|PLCeta2|Plc-eta2|Plcl4 - 4|4 E2 phospholipase C, eta 2 protein-coding 67288 Mm.125465 NM_026075 ENSMUSG00000021716 Srek1ip1 3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1 - 13|13 D1 splicing regulatory glutamine/lysine-rich protein 1interacting protein 1 protein-coding 546482 Gm5951 EG546482 - 10|10 C1 protein tyrosine phosphatase 4a1 pseudogene pseudo 105247097 Mm.483072 XR_881132 Gm42256 - - 4 A1|4 predicted gene, 42256 ncRNA 108168246 XR_001781722 Gm46521 - - 15 E1|15 predicted gene, 46521 ncRNA 386551 Mm.485316 NM_001003664 Gm5409 EG386551|Try10l - 6 B1|6 predicted pseudogene 5409 protein-coding 230099 Mm.283682 NM_139305 ENSMUSG00000028463 Car9 CAIX|Ca9|MN/CA9 - 4|4 A5 carbonic anhydrase 9 protein-coding 432554 Gm12183 - - 11|11 B1.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 pseudogene pseudo 668137 Mm.417085 NM_001142734 ENSMUSG00000094973 Gm8994 B020013A22Rik|EG668137 - 6 G1|6 predicted gene 8994 protein-coding 105242740 Gm38874 - - 6|6 predicted gene, 38874 ncRNA 77040 Mm.272972 NM_029846 ENSMUSG00000026289 Atg16l1 1500009K01Rik|Apg16l|Atg16l|WDR30 - 1|1 D autophagy related 16-like 1 (S. cerevisiae) protein-coding 108660 Mm.249986 NM_022423 ENSMUSG00000020496 Rnf187 2410016F01Rik|AB030190|RACO-1 - 11|11 B1.3 ring finger protein 187 protein-coding 107505 Neurod5 Atoh6 - - neurogenic differentiation 5 protein-coding 111600 Pmv58 Pmv-58 - - polytropic murine leukemia virus 58 other 260348 Gm12222 Dbi-ps - 11|11 B1.3 acyl-CoA-binding protein ACBP pseudogene pseudo 723959 NR_029781 ENSMUSG00000106348 Mir1a-2 Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2 - 18|18 A1 microRNA 1a-2 ncRNA 102635001 Gm29181 - - Y|Y predicted gene 29181 pseudo 53767 DXHXS120 DXS120h - - DNA segment, Chr X, human DXS120 unknown 75600 Mm.440576 NM_138304 ENSMUSG00000032246 Calml4 2010002G05Rik - 9|9 B calmodulin-like 4 protein-coding 16330 Mm.296202 NM_008385 ENSMUSG00000028894 Inpp5b 5PTase|AW260155|INPP5P - 4 D2.2|4 57.89 cM inositol polyphosphate-5-phosphatase B protein-coding 100463513 Gm19260 - - 17 E4|17 54.85 cM chaperonin containing Tcp1, subunit 7 (eta) pseudogene pseudo 102633521 Gm31329 - - 10|10 predicted gene, 31329 ncRNA 258485 Mm.271405 NM_146492 ENSMUSG00000096254 Olfr724 MOR247-2 - 14|14 C1 olfactory receptor 724 protein-coding 100038750 Mm.421516 4921514A10Rik - - - RIKEN cDNA 4921514A10 gene protein-coding 102465633 NR_106013 ENSMUSG00000098802 Mir7046 Gm27469|mmu-mir-7046 - 7|7 A3 microRNA 7046 ncRNA 110312 Mm.391436 NM_029971 ENSMUSG00000035383 Pmch A230109K23Rik - 10 C1|10 43.7 cM pro-melanin-concentrating hormone protein-coding 100422784 Gm12752 - - 4 A5|4 16.69 cM SET translocation pseudogene pseudo 108168233 XR_001781614 ENSMUSG00000085442 LOC108168233 - - 15 B3.1 60S ribosomal protein L23a pseudogene pseudo 16244 In(13)50Rk In50Rk - - inversion, Chr 13, Roderick 50 other 104197 Ea7 Ea-7 - - erythrocyte antigen 7 protein-coding 102637027 Gm33939 - - 16|16 predicted gene, 33939 ncRNA 107022 Mm.24356 NM_026240 ENSMUSG00000001700 Gramd3 9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2 - 18|18 D3 GRAM domain containing 3 protein-coding 214895 Mm.287854 NM_001013374 ENSMUSG00000001143 Lman2l A630028F14Rik|VIP36-like|VIPL - 1|1 B lectin, mannose-binding 2-like protein-coding 692177 Igkv9-119 bp9 - 6|6 C1 immunoglobulin kappa chain variable 9-119 pseudo 62127 D13Mit32 - - 13 64.06 cM DNA segment, Chr 13, Massachusetts Institute of Technology 32 unknown 434624 Ftl1-ps2 Ftl-ps|Gm20746 - 10 D3|10 ferritin light polypeptide, pseudogene 2 pseudo 102636925 Scgb2b31-ps Abpbg31-ps - 7 B1|7 secretoglobin, family 2B, member 31, pseudogene pseudo 52730 D17Zt12e - - - DNA segment, Chr 17, Zdenek Trachtulec 12 expressed unknown 664830 Gm7357 EG664830 - 1|1 A1 Moloney leukemia virus 10 pseudogene pseudo 100039280 Mm.441404 NM_001310463 ENSMUSG00000094817 Cphx3 Gm2135 - 14 A3|14 cytoplasmic polyadenylated homeobox 3 protein-coding 102636205 XR_391664 Gm33339 - - X A3.3|X predicted gene, 33339 ncRNA 404473 Mm.330366 NM_207674 ENSMUSG00000111689 Olfr1082 GA_x5J8B7W4CQV-18360-18784|MOR192-4_p|Olfr1082-ps1 - 2|2 D olfactory receptor 1082 protein-coding 258597 Mm.371710 NM_146604 ENSMUSG00000073896 Olfr716 MOR260-2 - 7|7 E3 olfactory receptor 716 protein-coding 100042856 Mm.425473 NM_001243039 ENSMUSG00000078606 Gm4070 VLIG-1 - 7 E3|7 predicted gene 4070 protein-coding 102637474 Gm21745 - - Y|Y predicted gene, 21745 protein-coding 266781 Mm.6118 NM_153680 ENSMUSG00000029146 Snx17 5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064 - 5|5 B1 sorting nexin 17 protein-coding 68469 Mm.435492 NR_152104 Sox6os 1110006G14Rik - 7|7 F1 SRY (sex determining region Y)-box 6, opposite strand ncRNA 109279937 LOC109279937 Mm303 - - VISTA enhancer mm303 biological-region 75841 Mm.4537 NM_175226 ENSMUSG00000037075 Rnf139 4930555P18Rik - 15|15 D1 ring finger protein 139 protein-coding 22240 Mm.8180 NM_009468 ENSMUSG00000024501 Dpysl3 CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1 - 18|18 B3 dihydropyrimidinase-like 3 protein-coding 554160 Mm.82577 BB283564 - - - expressed sequence BB283564 protein-coding 19157 Mm.86413 NM_011180 ENSMUSG00000017132 Cyth1 CLM1|CTH-1|CYTIP|Pscd1 - 11|11 E2 cytohesin 1 protein-coding 102638064 XR_381697 Gm34717 - - 12 C3|12 predicted gene, 34717 ncRNA 383998 Gm11889 - - 4|4 A3 LUC7-like 2 pseudogene pseudo 102638091 XR_385492 Gm34736 - - 17 A3.3|17 predicted gene, 34736 ncRNA 102639997 Gm36178 - - 19|19 predicted gene, 36178 ncRNA 258206 Mm.377377 NM_021368 ENSMUSG00000075069 Olfr1264 MOR236-1|Mor16|Ors16 - 2|2 E1 olfactory receptor 1264 protein-coding 233651 Mm.334108 NM_001162943 ENSMUSG00000036862 Dchs1 3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16 - 7|7 E3 dachsous cadherin related 1 protein-coding 97510 C77010 - - - expressed sequence C77010 protein-coding 102467598 n-TSgct7 n-Ts21 - 2 E5|2 nuclear encoded tRNA serine 7 (anticodon GCT) tRNA 77878 Mm.293198 NR_036598 ENSMUSG00000113056 6030440G07Rik - - 12|12 F1 RIKEN cDNA 6030440G07 gene ncRNA 108684028 LOC108684028 - - 19 C3 ES cell cis-regulatory motif 2c biological-region 71781 Mm.158754 NM_027921 ENSMUSG00000026220 Slc16a14 1110004H10Rik - 1|1 C5 solute carrier family 16 (monocarboxylic acid transporters), member 14 protein-coding 64340 Mm.23705 NM_178380 ENSMUSG00000037993 Dhx38 5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16 - 8|8 D3 DEAH (Asp-Glu-Ala-His) box polypeptide 38 protein-coding 98376 Mm.32901 NM_178883 ENSMUSG00000040124 Gorab NTKL-BP1|SCYL1-BP1|Scyl1bp1 - 1|1 H2.1 golgin, RAB6-interacting protein-coding 102636136 XR_391466 Gm33290 - - 7 B4|7 predicted gene, 33290 ncRNA 105245407 Gm40868 - - 12|12 predicted gene, 40868 protein-coding 319468 Mm.489703 NM_176919 ENSMUSG00000034613 Ppm1h A430075L18Rik|ARHCL1|C030002B11Rik - 10|10 D2 protein phosphatase 1H (PP2C domain containing) protein-coding 105244139 XR_866184 Gm39806 - - 2 B|2 predicted gene, 39806 ncRNA 16202 Mm.274846 NM_010562 ENSMUSG00000030890 Ilk AA511515|ESTM24 - 7|7 E3 integrin linked kinase protein-coding 108281112 LOC108281112 - - - CNS+2 enhancer downstream of Pax9 biological-region 623810 Gm9750 - - 19|19 A predicted gene 9750 protein-coding 101120 Mm.442997 AI506767 - - - expressed sequence AI506767 protein-coding 102631823 XR_389709 Gm30063 - - 3 B|3 predicted gene, 30063 ncRNA 666351 Gm13232 - - 4|4 E1 predicted gene 13232 pseudo 117570 DXMgc93 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 93 unknown 12054 Mm.405834 NM_009745 ENSMUSG00000029681 Bcl7b - - 5|5 G2 B cell CLL/lymphoma 7B protein-coding 102641098 XR_389255 LOC102641098 - - - uncharacterized LOC102641098 ncRNA 16428 Mm.339927 NM_010583 ENSMUSG00000020395 Itk Emt|Tcsk|Tsk - 11 B1.1|11 27.75 cM IL2 inducible T cell kinase protein-coding 667098 Gm8454 EG667098 - 5|5 G2 predicted gene 8454 pseudo 546263 Mm.475615 NM_001126491 ENSMUSG00000079704 Gm14459 - - X|X A1.1 predicted gene 14459 protein-coding 111581 Pmv13 Pmv-13 - - polytropic murine leukemia virus 13 other 100093676 Trnad-auc - - - transfer RNA aspartic acid (anticodon AUC) tRNA 102635400 Gm38478 - - X|X predicted gene, 38478 ncRNA 108168172 XR_001781348 Gm46463 - - 14 A1|14 predicted gene, 46463 ncRNA 100125339 Mm.472263 NR_027298 ENSMUSG00000097845 A230020J21Rik - - 1 H6|1 RIKEN cDNA A230020J21 gene ncRNA 102641018 XR_389586 LOC102641018 - - - uncharacterized LOC102641018 ncRNA 606497 Mm.165199 NR_029384 ENSMUSG00000098682 Otx2os1 - - 14 C1|14 orthodenticle homeobox 2 opposite strand 1 ncRNA 102633802 Gm31539 - - 5|5 predicted gene, 31539 ncRNA 432615 Mm.126359 NR_130966 ENSMUSG00000069588 Gm11733 - - 11 E2|11 predicted gene 11733 ncRNA 102635852 XR_385661 Gm33089 - - 17 D|17 predicted gene, 33089 ncRNA 102638085 XM_006535835 LOC102638085 - - 5 B1 uncharacterized protein C2orf16-like protein-coding 665611 Rps12-ps14 EG665611|Gm7711 - X|X E3 ribosomal protein S12, pseudogene 14 pseudo 114737 Iba1 - - 2 49.45 cM induction of brown adipocytes 1 unknown 272428 Mm.185183 NM_178758 ENSMUSG00000030972 Acsm5 C730019D22|C730027J19Rik - 7|7 F2 acyl-CoA synthetase medium-chain family member 5 protein-coding 69439 Mm.263708 NM_001177437 ENSMUSG00000022603 Mroh4 1700016M24Rik - 15|15 D3 maestro heat-like repeat family member 4 protein-coding 22348 Mm.143404 NM_009508 ENSMUSG00000037771 Slc32a1 R75019|VGAT|Viaat - 2|2 H1 solute carrier family 32 (GABA vesicular transporter), member 1 protein-coding 109821 Mm.33326 NM_028066 ENSMUSG00000031645 F11 1600027G01Rik|AI503996|Cf11|FXI|PTA - 8 B1.1|8 25.14 cM coagulation factor XI protein-coding 269704 Mm.138617 NM_001081750 ENSMUSG00000079215 Zfp664 AW060232|D930038J03Rik|ZFOC1|Znf664 - 5|5 F zinc finger protein 664 protein-coding 77630 Mm.332511 NM_029947 ENSMUSG00000035456 Prdm8 4930565F05Rik|PFM5 - 5|5 E3 PR domain containing 8 protein-coding 225681 Gm4842 EG225681 - 18 E2|18 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 22177 Mm.46301 NM_011662 ENSMUSG00000030579 Tyrobp DAP12|KARAP|Ly83 - 7 B1|7 17.45 cM TYRO protein tyrosine kinase binding protein protein-coding 102636111 XR_382693 Gm33274 - - 13 C3|13 predicted gene, 33274 ncRNA 108373 Xmmv62 Xmmv-62|Xp-21 - - xenotropic-MCF leukemia virus 62 other 109840 Ly11 Ly-11 - - lymphocyte antigen 11 protein-coding 100416119 Gm17926 - - 19|19 C2 peroxiredoxin 3 pseudogene pseudo 93895 NR_027920 Msx1os Msx1as - 5 B3|5 20.21 cM msh homeobox 1 opposite strand ncRNA 21242 T(6;8)2Ad T2Ad - - reciprocal translocation, Chr 6 and 8, Adler 2 other 98022 Mm.394059 C80993 - - - expressed sequence C80993 unknown 69303 Mm.352258 NR_038077 ENSMUSG00000085984 1700001G11Rik - - 14|14 D1 RIKEN cDNA 1700001G11 gene ncRNA 75137 Mm.196275 NM_028328 ENSMUSG00000028106 Rprd2 2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460 - 3|3 F2.1 regulation of nuclear pre-mRNA domain containing 2 protein-coding 100503002 Mm.444534 XR_868330 Gm38424 - - 5 B1|5 predicted gene, 38424 ncRNA 100416793 Gm18255 - - 7|7 E3 methyltransferase like 6 pseudogene pseudo 65255 Mm.51340 NM_023048 ENSMUSG00000042607 Asb4 8430401O13Rik|AV117194|AW060255 - 6 A1|6 1.99 cM ankyrin repeat and SOCS box-containing 4 protein-coding 69217 Mm.274158 NM_148927 ENSMUSG00000040428 Plekha4 2410005C22Rik|C88169|Pepp1 - 7|7 B3 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4 protein-coding 105247194 XR_881524 Gm42333 - - 4 D3|4 predicted gene, 42333 ncRNA 258058 Olfr858-ps1 MOR146-6P - 9|9 A3 olfactory receptor 858, pseudogene 1 pseudo 100417523 Gm14854 - - X|X D predicted gene 14854 pseudo 105271 Mm.342935 AU017674 - - - expressed sequence AU017674 protein-coding 27736 D1Ncl2 - - 1 26.88 cM DNA segment, Chr 1, Nicolas C. Levy 2 unknown 13604 Ecs - - 14 20.88 cM epistatic circling SWR/J unknown 52149 DXErtd770e - - X 13.5 cM DNA segment, Chr X, ERATO Doi 770, expressed unknown 546015 Gm5905 EG546015 - 7|7 F5 ribosomal protein S9 pseudogene pseudo 70532 5730433K22Rik - - 6|6 RIKEN cDNA 5730433K22 gene protein-coding 675514 Gm15191 - - X F3|X glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102633898 XR_384991 Gm31613 - - 16 C3.1|16 predicted gene, 31613 ncRNA 112434 Lrnpcs1 - - - learning-preconditioned stimulus 1 unknown 108168554 XM_017318751 ENSMUSG00000094294 LOC108168554 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 60849 D5Mit67 - - 5 82.1 cM DNA segment, Chr 5, Massachusetts Institute of Technology 67 unknown 232386 Mm.257367 NR_073373 ENSMUSG00000107153 Gm38404 D130058E03 - 6|6 F3 predicted gene, 38404 ncRNA 257829 Gm5023 EG257829|GA_x5J8B7W4CQV-104617-103730 - 2 D|2 olfactory receptor GA_x5J8B7W4CQV-104617-103730 pseudo 338535 Mm.483275 NR_040353 ENSMUSG00000086843 E030013I19Rik - - 2 A1|2 RIKEN cDNA E030013I19 gene ncRNA 105247048 LOC105247048 - - 5 A3 ubiquitin-conjugating enzyme E2 L3 pseudogene pseudo 433809 Mm.156205 NM_001033489 ENSMUSG00000058498 Rnf207 D330010C22Rik|Gm143 - 4|4 E2 ring finger protein 207 protein-coding 671695 Vmn2r-ps22 - - 5|5 F vomeronasal 2, receptor, pseudogene 22 pseudo 102635733 XR_389342 Gm32995 - - 5 E3|5 predicted gene, 32995 ncRNA 108167526 Gm46035 - - 8 A2|8 non-histone chromosomal protein HMG-14 pseudogene pseudo 105171 Mm.423137 NM_001042591 ENSMUSG00000074794 Arrdc3 AI450344|mKIAA1376 - 13|13 C2 arrestin domain containing 3 protein-coding 26456 Mm.34404 NM_011976 ENSMUSG00000025207 Sema4g AI507908|AW554132 - 19|19 C3 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G protein-coding 239555 Mm.307163 NM_178719 ENSMUSG00000022412 Mief1 A230016E22|AI452372|Smcr7l - 15|15 E1 mitochondrial elongation factor 1 protein-coding 622202 Rpl30-ps9 EG622202|Gm6295 - X D|X ribosomal protein L30, pseudogene 9 pseudo 665329 Gm7588 EG665329 - 9|9 A1 peptidylprolyl isomerase B pseudogene pseudo 102640020 XR_001778943 Gm29152 - - 1 C2|1 predicted gene 29152 ncRNA 67230 Mm.333574 NM_026046 ENSMUSG00000057894 Zfp329 2810439M05Rik|4632409L22Rik|ZNF329 - 7|7 A1 zinc finger protein 329 protein-coding 106493 AA415437 - - - expressed sequence AA415437 unknown 105246565 XR_877830 Gm41838 - - 19 C2|19 predicted gene, 41838 ncRNA 102638201 Mm.406863 XR_383404 E130120K24Rik - - 14|14 C1 RIKEN cDNA E130120K24 gene ncRNA 232934 Mm.440069 NM_145579 ENSMUSG00000048481 Mypop Myodysa|P42pop - 7|7 A3 Myb-related transcription factor, partner of profilin protein-coding 380839 Mm.250802 NM_173051 ENSMUSG00000079049 Serpinb1c EIC|ovalbumin - 13 A3.2|13 13.76 cM serine (or cysteine) peptidase inhibitor, clade B, member 1c protein-coding 102633996 XR_377658 Gm31686 - - 6 B3|6 predicted gene, 31686 ncRNA 72276 Mm.271215 NR_040687 ENSMUSG00000100175 1700025M24Rik - - 5|5 C3.2 RIKEN cDNA 1700025M24 gene ncRNA 19353 Mm.292510 NM_009007 ENSMUSG00000001847 Rac1 AL023026|D5Ertd559e - 5 G2|5 82.22 cM Rac family small GTPase 1 protein-coding 62518 D11Mit128 - - 11 79.52 cM DNA segment, Chr 11, Massachusetts Institute of Technology 128 unknown 11419 Mm.440107 NM_009597 ENSMUSG00000023017 Asic1 AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2 - 15|15 F1 acid-sensing (proton-gated) ion channel 1 protein-coding 100040482 Mm.479861 NM_001168334 ENSMUSG00000096194 Btbd35f2 Gm2799 - X A3.1|X BTB domain containing 35, family member 2 protein-coding 633752 Gm7125 EG633752 - 15|15 D3 high mobility group nucleosomal binding domain 2 pseudogene pseudo 61415 D5Mit187 - - 5 56.1 cM DNA segment, Chr 5, Massachusetts Institute of Technology 187 unknown 100035089 W10q15 - - - weight 10 weeks QTL 15 unknown 628002 Gm6823 EG628002 - X|X A7.2 YTH domain family 2 pseudogene pseudo 69368 Mm.293273 NM_027057 ENSMUSG00000073643 Wdfy1 1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435 - 1|1 C4 WD repeat and FYVE domain containing 1 protein-coding 105246908 XR_880410 Chaer1 Gm42105|Gm42757 - 5 C3.3|5 cardiac hypertrophy associated epigenetic regulator 1 ncRNA 105243634 XR_880343 Gm39482 - - 11 E2|11 predicted gene, 39482 ncRNA 19211 Mm.245395 NM_008960 ENSMUSG00000013663 Pten 2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1 - 19 C1|19 28.14 cM phosphatase and tensin homolog protein-coding 108168316 Gm46574 - - 17 C|17 60S ribosomal protein L26 pseudogene pseudo 50799 Mm.24513 NM_015829 ENSMUSG00000015112 Slc25a13 AI785475|Ctrn - 6|6 A1 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13 protein-coding 69571 Mm.396412 NR_040679 ENSMUSG00000100157 2310034O05Rik - - 5|5 E4 RIKEN cDNA 2310034O05 gene ncRNA 19325 Mm.378993 NM_016676 ENSMUSG00000020671 Rab10 AW107754 - 12 A1.1|12 1.71 cM RAB10, member RAS oncogene family protein-coding 15293 Hmgb1-rs13 Hmg1-rs13 - - high mobility group box 1, related sequence 13 pseudo 15467 Mm.389709 NM_013557 ENSMUSG00000029613 Eif2ak1 HCR|Hri - 5|5 G2 eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 433944 Mm.491053 NR_040416 ENSMUSG00000086847 Tbx3os2 Gm16065 - 5|5 F T-box 3, opposite strand 2 ncRNA 27570 D5Buc25 388L8.SP6 - 5 38.44 cM DNA segment, Chr 5, Bucan 25 unknown 108168837 LOC108168837 - - 2 H3 28S ribosomal protein S18c, mitochondrial pseudogene pseudo 73205 Mm.331544 NM_001081343 ENSMUSG00000028300 3110043O21Rik AI840585|C9orf72 - 4|4 A5 RIKEN cDNA 3110043O21 gene protein-coding 73872 Mm.427301 NR_038183 ENSMUSG00000086066 4930423M02Rik - - 4|4 A1 RIKEN cDNA 4930423M02 gene ncRNA 62468 D16Mit217 - - 16 44.58 cM DNA Segment, Chr 16 Massachusetts Institute of Technology 217 unknown 667210 Gm8518 EG667210 - 14|14 C1 predicted gene 8518 pseudo 381827 Mm.179075 NM_001001987 1700073E17Rik - - 6|6 G3 ribosomal protein L7 pseudogene pseudo 77987 Mm.222497 NM_198007 ENSMUSG00000038774 Ascc3 ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH - 10|10 B3 activating signal cointegrator 1 complex subunit 3 protein-coding 226982 Mm.260943 NM_198303 ENSMUSG00000026083 Eif5b A030003E17Rik|BC018347|IF2 - 1|1 B eukaryotic translation initiation factor 5B protein-coding 100042816 Gm4045 - - 6 C1|6 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene pseudo 238271 Mm.44465 NM_172805 ENSMUSG00000034402 Kcnh5 Eag2 - 12|12 C3 potassium voltage-gated channel, subfamily H (eag-related), member 5 protein-coding 109971 Rua - - - raffinose acetate tasting unknown 432989 Mm.383979 NR_045743 ENSMUSG00000097003 D930007P13Rik - - 15|15 F3 Riken cDNA D930007P13 gene ncRNA 329844 Mm.128934 NR_040668 ENSMUSG00000085515 C630028M04Rik - - 4|4 B2 RIKEN cDNA C630028M04 gene ncRNA 493036 Ahl2 - - 5 42.22 cM age related hearing loss 2 unknown 75576 Mm.443235 XR_381601 1700030L22Rik - - 12|12 C1 RIKEN cDNA 1700030L22 gene ncRNA 326620 Mm.261642 NM_178193 ENSMUSG00000069266 Hist1h4b - - 13|13 A3.1 histone cluster 1, H4b protein-coding 20515 Mm.272675 NM_015747 ENSMUSG00000027397 Slc20a1 AI607883|Glvr-1|Glvr1 - 2 F1|2 62.79 cM solute carrier family 20, member 1 protein-coding 85230 D17Mit244 - - 17 60.34 cM DNA Segment, Chr 17, Massachusetts Institute of Technology 244 unknown 100036323 Marq3 - - 11 80.84 cM methamphetamine response QTL 3 unknown 102638129 Mm.412562 Gm11587 - - 1|1 30.64 cM predicted gene 11587 ncRNA 102638933 Mm.332013 XR_390918 Fhad1os2 Gm13643 - 4 E1|4 74.75 cM forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 2 ncRNA 109613 Es29 Es-29 - - esterase 29 protein-coding 55991 Mm.142253 NM_019482 ENSMUSG00000031934 Panx1 AI847747 - 9|9 A2 pannexin 1 protein-coding 100526485 NR_037253 ENSMUSG00000105330 Mir669a-6 mmu-mir-669a-6 - 2 A1|2 8.22 cM microRNA 669a-6 ncRNA 102641500 Mm.460673 LOC102641500 - - - uncharacterized LOC102641500 ncRNA 102637175 Gm28368 - - Y|Y predicted gene 28368 protein-coding 332309 Mm.240520 NM_001033426 ENSMUSG00000073574 Grxcr2 Gm851 - 18|18 B3 glutaredoxin, cysteine rich 2 protein-coding 102638298 XR_381584 Gm34894 - - 12 B3|12 predicted gene, 34894 ncRNA 435965 Mm.333783 NM_001024707 ENSMUSG00000001802 Lrp3 - - 7|7 B2 low density lipoprotein receptor-related protein 3 protein-coding 105244151 XR_879805 LOC105244151 - - 11 A5 uncharacterized LOC105244151 ncRNA 64136 Mm.30222 NM_022324 ENSMUSG00000022769 Sdf2l1 - - 16|16 A3 stromal cell-derived factor 2-like 1 protein-coding 109642 Tsz1 Tsz-1 - - thymus size 1 protein-coding 108167768 LOC108167768 - - 1 H6 40S ribosomal protein S11-like pseudo 102640053 Gm28700 - - Y|Y predicted gene 28700 protein-coding 108167517 XR_001778492 Gm46029 - - 8 A1.1|8 predicted gene, 46029 ncRNA 100417392 Gm15625 - - 9|9 B serpine1 mRNA binding protein 1 pseudogene pseudo 105242762 Gm38892 - - 6|6 predicted gene, 38892 ncRNA 170658 Mm.375824 NR_002445 BC002163 - - 16|16 B4 NADH dehydrogenase Fe-S protein 5 pseudogene pseudo 100036018 Vmmt13 - - - vertebral morphology and mechanical traits 13 unknown 667056 Mm.311395 Gm8437 EG667056 - 17|17 A3.3 predicted gene 8437 unknown 53317 Mm.286349 NM_016784 ENSMUSG00000027998 Plrg1 AA958940|C80566|Tango4 - 3|3 E3 pleiotropic regulator 1 protein-coding 70361 Mm.290857 NM_027400 ENSMUSG00000041891 Lman1 2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58 - 18|18 E1 lectin, mannose-binding, 1 protein-coding 100038995 XM_006542784 ENSMUSG00000095523 LOC100038995 - - 5|5 PRAME family member 8-like protein-coding 17626 Ms48 MMS48 - - minisatellites detected by probe MMS48 other 110196 Mm.39472 NM_134469 ENSMUSG00000059743 Fdps 6030492I17Rik|AI256750|Fdpsl1|mKIAA1293 - 3 F1|3 39.01 cM farnesyl diphosphate synthetase protein-coding 93758 Mthfr-rs1 - - - 5,10-methylenetetrahydrofolate reductase, related sequence 1 protein-coding 61100 D1Mit494 - - 1 55.04 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 494 unknown 69767 1600017G08Rik - - - RIKEN cDNA 1600017G08 gene protein-coding 100698 Mm.21926 AI562086 - - - expressed sequence AI562086 unknown 21172 T(3;6)37Ad T37Ad - - reciprocal translocation, Chr 3 and 6, Adler 37 other 74025 Mm.479273 NM_028721 ENSMUSG00000032558 Nphp3 3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy - 9 F1|9 56.11 cM nephronophthisis 3 (adolescent) protein-coding 73339 Mm.231975 NR_040447 ENSMUSG00000099349 1700047G03Rik - - 15|15 A1 RIKEN cDNA 1700047G03 gene ncRNA 100043812 Mm.437523 XR_379922 Gm4665 - - 9 F3|9 predicted gene 4665 unknown 667006 Gm8417 EG667006 - 14|14 C1 predicted gene 8417 pseudo 110120440 LOC110120440 - - - VISTA enhancer mm1564 biological-region 111721 Mpmv36 Mpmv-36 - - modified polytropic murine leukemia virus 36 other 85202 D13Mit1004 D18Mit223 - - DNA segment, Chr 13, Massachusetts Institute of Technology 1004 unknown 624311 Gm6493 EG624311 - 16|16 B1 transportin 1 pseudogene pseudo 105246729 Gm41971 - - 1|1 predicted gene, 41971 ncRNA 117587 Apoca Apoc - - anterior polar cataract protein-coding 112379 Igfbp3q1 - - - insulin-like growth factor binding protein 3 QTL 1 unknown 102639969 XR_380458 Gm36158 - - 10 B4|10 predicted gene, 36158 ncRNA 116953 Bulb2 Bulb6a - 6 66.78 cM bulb size 2 unknown 212627 Mm.27703 NM_144806 ENSMUSG00000020528 Prpsap2 A230054F23Rik - 11|11 B2 phosphoribosyl pyrophosphate synthetase-associated protein 2 protein-coding 102643083 Mm.436788 XR_001783423 LOC102643083 - - 2 E2 uncharacterized LOC102643083 ncRNA 52403 D4Ertd628e - - 4 16.86 cM DNA segment, Chr 4, ERATO Doi 628, expressed unknown 26390 Mm.330501 NM_011941 ENSMUSG00000033902 Mapkbp1 2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596 - 2|2 E5 mitogen-activated protein kinase binding protein 1 protein-coding 545508 Gm5844 EG545508 - 3|3 A1 heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene pseudo 105243913 Gm39632 - - 1|1 predicted gene, 39632 ncRNA 75545 Mm.391270 NR_045442 ENSMUSG00000085757 Tslrn1 1700019B21Rik - X|X A6 testis specific long noncoding RNA 1 ncRNA 628854 Mm.451981 NR_152170 Gm15517 - - 7 B3|7 predicted gene 15517 ncRNA 105243398 XR_870716 Gm39332 - - 9 A5.3|9 predicted gene, 39332 ncRNA 76676 Mm.110038 NR_040510 ENSMUSG00000087455 5330411J11Rik - - 2|2 C1.1 RIKEN cDNA 5330411J11 gene ncRNA 100042514 Mm.6853 NM_001309382 ENSMUSG00000074445 Sprr2a3 - - 3 F1|3 small proline-rich protein 2A3 protein-coding 72347 Mm.166813 2210011G09Rik - - 2|2 RIKEN cDNA 2210011G09 gene protein-coding 108612 Iap3rc25 - - - intracisternal A-type particle, U3 region, SINE repeat c-25 other 85175 D13Mit82 - - 13 12.91 cM DNA segment, Chr 13, Massachusetts Institute of Technology 82 unknown 402745 E430022E14Rik - - 8|8 RIKEN cDNA E430022E14 gene protein-coding 77834 Mm.376315 A930041H05Rik - - 13|13 RIKEN cDNA A930041H05 gene protein-coding 637053 Mm.425135 NM_001104615 ENSMUSG00000092049 Vmn2r4 AW742767|EG637053 - 3|3 E1 vomeronasal 2, receptor 4 protein-coding 668412 Gm9157 EG668412 - X|X D estrogen receptor-binding fragment-associated gene 9 pseudogene pseudo 100502926 Gm19457 - - 5 B1|5 17.27 cM predicted gene, 19457 pseudo 100040870 XR_001781339 Gm3005 100040859 - 14 A1|14 predicted gene 3005 protein-coding 319336 Mm.389155 NR_015507 ENSMUSG00000073627 C130036L24Rik - - 1|1 C5 RIKEN cDNA C130036L24 gene ncRNA 404400 Olfr528-ps1 GA_x5J8B7W72BC-152913-152037|MOR252-5_p - 7|7 F4 olfactory receptor 528, pseudogene 1 pseudo 71421 Mm.79700 NM_027793 ENSMUSG00000029282 Amtn 5430427O21Rik - 5|5 E1 amelotin protein-coding 111176 pwk - - - patchwork unknown 105245024 XR_872905 ENSMUSG00000113001 Gm40538 - - 12 D3|12 predicted gene, 40538 ncRNA 102634519 XR_381074 Gm32080 - - 11 A3.1|11 predicted gene, 32080 ncRNA 102637271 XR_385804 Gm34131 - - 17 E3|17 predicted gene, 34131 ncRNA 666517 Gm8144 EG666517 - X|X A6 predicted gene 8144 pseudo 102467634 n-TSgct1 n-Ts15 - 1 H5|1 nuclear encoded tRNA serine 1 (anticodon GCT) tRNA 237116 Gm4919 EG237116 - X|X F3 ferritin light chain 2 pseudogene pseudo 16562 Mm.99996 NM_153103 ENSMUSG00000020821 Kif1c B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3 - 11|11 B3 kinesin family member 1C protein-coding 104348 Mm.485851 NM_023266 ENSMUSG00000068134 Zfp120 AI315103|E030042N05Rik|F80|MZF31|Zfp844 - 2|2 G3 zinc finger protein 120 protein-coding 100124456 NR_030604 ENSMUSG00000077921 Mir872 Mirn872|mmu-mir-872 - 4 C5|4 microRNA 872 ncRNA 11847 Mm.3506 NM_009705 ENSMUSG00000021125 Arg2 AII|AU022422 - 12|12 C3 arginase type II protein-coding 74392 Mm.27716 NM_153406 ENSMUSG00000033444 Specc1l 4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376 - 10|10 C1 sperm antigen with calponin homology and coiled-coil domains 1-like protein-coding 56324 Mm.263639 NM_019667 ENSMUSG00000055371 Stam2 1200004O12Rik|5730456G07Rik|BB145015|Hbp - 2|2 C1.1 signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 protein-coding 105246138 XM_011246162 Gm41476 - - 16 C3.1|16 predicted gene, 41476 protein-coding 85091 D2Mit231 - - 2 2.26 cM DNA segment, Chr 2, Massachusetts Institute of Technology 231 unknown 26407 Mm.28587 NM_011948 ENSMUSG00000014426 Map3k4 D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213 - 17 8.42 cM|17 A1 mitogen-activated protein kinase kinase kinase 4 protein-coding 78603 Mm.442597 NR_037993 ENSMUSG00000089706 B230216N24Rik - - 1|1 D RIKEN cDNA B230216N24 gene ncRNA 66309 Mm.256185 NM_025480 ENSMUSG00000067365 Tmem128 2810021O14Rik - 5|5 B3 transmembrane protein 128 protein-coding 217779 Mm.341945 NM_153121 ENSMUSG00000053769 Lysmd1 2610022K04Rik|AI415311 - 3|3 F2.1 LysM, putative peptidoglycan-binding, domain containing 1 protein-coding 102637874 XR_380728 Gm34574 - - 10 D1|10 predicted gene, 34574 ncRNA 100043225 NM_001100618 Gm16378 EG434356 - 8|8 E1 eukaryotic translation initiation factor 1 pseudogene pseudo 105244336 XR_866885 Gm39966 - - 2 H1|2 predicted gene, 39966 ncRNA 112248 Sluc5 - - 1 76.25 cM susceptibility to lung cancer 5 unknown 246195 Ltnr6 - - - lentinan responsive 6 protein-coding 241062 Mm.103539 NM_175508 ENSMUSG00000073678 Pgap1 5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto - 1|1 C1.1-C1.2 post-GPI attachment to proteins 1 protein-coding 215446 Mm.76648 NM_178676 ENSMUSG00000041608 Entpd3 Cd39l3|HB6|NTPDase-3 - 9|9 F4 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 399635 D230044B12Rik - - - RIKEN cDNA D230044B12 gene protein-coding 74458 Mm.390708 NR_046460 ENSMUSG00000115665 4933425B07Rik - - 14|14 C1 RIKEN cDNA 4933425B07 gene ncRNA 102467249 n-TRcct4 n-Tr13 - X E1|X nuclear encoded tRNA arginine 4 (anticodon CCT) tRNA 216881 Mm.48648 NM_177618 ENSMUSG00000020811 Wscd1 mKIAA0523 - 11|11 B4 WSC domain containing 1 protein-coding 104211 Aldr2 Ahr-2|Ahr2 - - aldehyde reductase 2 protein-coding 13074 Mm.1262 NM_007809 ENSMUSG00000003555 Cyp17a1 Cyp17|p450c17 - 19 C3|19 38.97 cM cytochrome P450, family 17, subfamily a, polypeptide 1 protein-coding 217212 Mm.46248 NM_145435 ENSMUSG00000017311 Pyy - - 11|11 D peptide YY protein-coding 630857 Gm7045 - - 13|13 B3 calcium binding and coiled-coil domain 2 pseudogene pseudo 110332 Mm.444633 NM_173449 ENSMUSG00000044957 Pp2d1 4921523A10Rik - 17|17 C protein phosphatase 2C-like domain containing 1 protein-coding 666454 Gm8114 EG666454 - 14|14 C1 predicted gene 8114 pseudo 110934 Mrg2-rs1 - - - Mrg2, myeloid ecotropic viral integration site related gene 2, related sequence 1 protein-coding 61552 D9Mit152 - - 9 72.64 cM DNA segment, Chr 9, Massachusetts Institute of Technology 152 unknown 110581 Tcra-V11.4 - - - T cell receptor alpha, variable 11.4 other 628056 Igkv1-131 EG628056|Gm6832|bh2 - 6|6 C1 immunoglobulin kappa variable 1-131 other 23887 Mm.257927 NM_011820 ENSMUSG00000006344 Ggt5 AI551243|GGL|GGT-REL|Ggtla1 - 10|10 C1 gamma-glutamyltransferase 5 protein-coding 212528 Mm.275720 NM_198020 ENSMUSG00000001909 Trmt1 6720406L13Rik|6720477L24|D8Ertd812e - 8 C2|8 41.02 cM tRNA methyltransferase 1 protein-coding 77792 A930003K04Rik - - 17|17 RIKEN cDNA A930003K04 gene protein-coding 105244613 XR_880020 Gm40199 - - 11 B5|11 predicted gene, 40199 ncRNA 74735 Mm.240252 NM_029077 ENSMUSG00000039853 Trim14 5830400N10Rik|pub - 4|4 B1 tripartite motif-containing 14 protein-coding 613254 Mm.383758 NR_028363 ENSMUSG00000093483 AA465934 - - 11 C|11 expressed sequence AA465934 ncRNA 105245428 XR_872764 Gm40884 - - 12 C1|12 predicted gene, 40884 ncRNA 381305 Mm.329667 NM_001024952 ENSMUSG00000040423 Rc3h1 5730557L09Rik|Gm551|N28103|mKIAA2025 - 1|1 H2.1 RING CCCH (C3H) domains 1 protein-coding 66898 Mm.18814 NM_025833 ENSMUSG00000038859 Baiap2l1 1300006M19Rik|AI585895|IRTKS - 5|5 G2 BAI1-associated protein 2-like 1 protein-coding 226252 Mm.358870 NM_145505 ENSMUSG00000033478 Fam160b1 AI450540|mKIAA1600 - 19|19 D2 family with sequence similarity 160, member B1 protein-coding 111775 Iapls3-3 - - - intracisternal A particle, lymphocyte specific 3-3 other 107528 Mm.24341 NM_053201 ENSMUSG00000031227 Magee1 AI847422|DAMAGE|mMage-e1 - X|X D melanoma antigen, family E, 1 protein-coding 16797 Mm.10280 NM_010689 ENSMUSG00000030742 Lat p36-38|pp36 - 7|7 F3 linker for activation of T cells protein-coding 67979 Mm.27123 NM_026487 ENSMUSG00000013662 Atad1 4921525H23Rik|AW107648|Thorase - 19|19 C1 ATPase family, AAA domain containing 1 protein-coding 214137 Mm.229287 NM_172525 ENSMUSG00000039831 Arhgap29 6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1 - 3|3 G1 Rho GTPase activating protein 29 protein-coding 67326 Mm.27711 NM_026091 ENSMUSG00000027327 1700037H04Rik - - 2|2 F1 RIKEN cDNA 1700037H04 gene protein-coding 78332 2510010K19Rik - - 11|11 RIKEN cDNA 2510010K19 gene protein-coding 209212 Mm.46455 NM_145950 ENSMUSG00000041153 Osgin2 BC010311|C230027H09Rik - 4|4 A2 oxidative stress induced growth inhibitor family member 2 protein-coding 667201 Gm8510 EG667201 - Y|Y A1 predicted gene 8510 pseudo 270499 Gm5058 EG270499 - 7|7 B1 predicted gene 5058 pseudo 20717 Mm.395085 NM_009253 ENSMUSG00000079012 Serpina3m 3e46|AI195004|MMCM7|MMSPi2.4|Spi-2l|Spi-2rs1|Spi2-rs1|Spi2.4|spi2 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 3M protein-coding 277353 Mm.473700 NM_178254 ENSMUSG00000038932 Tcfl5 Figlb|Sosf1 - 2|2 H4 transcription factor-like 5 (basic helix-loop-helix) protein-coding 666576 Gm8171 EG666576 - 9 A4|9 predicted gene 8171 pseudo 111945 Pltr14 - - - polytropic long terminal repeat containing proviral locus 14 other 102639638 Gm35902 - - 1|1 predicted gene, 35902 protein-coding 668469 Ighv1-5 EG668469|Gm9185 - 12 F2|12 immunoglobulin heavy variable V1-5 other 102636107 XR_001782921 Gm33272 - - Y E|Y predicted gene, 33272 ncRNA 100039553 Gm2307 - - X|X F2 predicted gene 2307 pseudo 112171 Daq5 - - 10 25.66 cM directional asymmetry QTL 5 unknown 103104 AA545197 - - - expressed sequence AA545197 unknown 105244099 NM_001359164 Gm39773 LCN16 - 2 A3|2 predicted gene, 39773 protein-coding 319770 B930093H17Rik - - 8|8 RIKEN cDNA B930093H17 gene protein-coding 51789 Mm.251115 NM_016788 ENSMUSG00000022791 Tnk2 Ack|Ack-1|Ack1|Cdgip|Pyk1 - 16|16 B3 tyrosine kinase, non-receptor, 2 protein-coding 116877 Pgia2 - - 2 69.8 cM proteoglycan induced arthritis 2 unknown 102633968 XR_384165 Gm31665 - - 15 D3|15 predicted gene, 31665 ncRNA 72560 Mm.474510 NM_028279 ENSMUSG00000043943 Naalad2 2700022G20Rik|D9Ertd285e|Folh1b|GCP3|GCPIII|NAADALASE2|NAALADASE2 - 9 A2|9 7.02 cM N-acetylated alpha-linked acidic dipeptidase 2 protein-coding 102467508 n-TCgca53 n-Tc53 - 9 F1|9 nuclear encoded tRNA cysteine 53 (anticodon GCA) tRNA 100417285 Gm18503 - - 12|12 B3 zyg-11 homolog A pseudogene pseudo 243529 Mm.33796 NM_198622 ENSMUSG00000044927 H1fx Gm461|H1.10|H1X - 6|6 D1 H1 histone family, member X protein-coding 102635260 XR_377902 Gm32646 - - 6 D3|6 predicted gene, 32646 ncRNA 105247060 XR_880895 Gm42235 - - 5 B1|5 predicted gene, 42235 ncRNA 67210 Mm.178424 NM_026033 ENSMUSG00000007415 Gatad1 2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag - 5|5 A1 GATA zinc finger domain containing 1 protein-coding 666495 Gm13181 - - 2|2 A1 presenilin associated, rhomboid-like pseudogene pseudo 102638775 Gm21836 - - 9|9 predicted gene, 21836 protein-coding 100417357 Gm18557 - - 10|10 A2 cornichon homolog pseudogene pseudo 71145 Mm.83840 NM_028903 ENSMUSG00000022032 Scara5 4932433F15Rik|4933425F03Rik|AV278087|Tesr - 14|14 D1 scavenger receptor class A, member 5 protein-coding 100526548 NR_037240 ENSMUSG00000093169 Mir3079 mmu-mir-3079 - 15 D3|15 35.66 cM microRNA 3079 ncRNA 434017 Mm.473685 NM_001101533 ENSMUSG00000115253 Vmn1r20 EG434017|Gm5569 - 6|6 B3 vomeronasal 1 receptor 20 protein-coding 320926 Mm.372587 C730029A08Rik - - 9|9 RIKEN cDNA C730029A08 gene protein-coding 209195 Mm.44747 NM_172469 ENSMUSG00000022949 Clic6 5730466J16Rik|AL022908|AW045520|CLIC1L - 16|16 C4 chloride intracellular channel 6 protein-coding 102635416 XR_383367 Gm32762 - - 14 B|14 predicted gene, 32762 ncRNA 12549 Mm.370848 NM_020260 ENSMUSG00000022799 Arhgap31 5830477L08Rik|AU041750|Cdgap|D330026I07Rik - 16|16 B4 Rho GTPase activating protein 31 protein-coding 72054 Mm.160020 NM_024444 ENSMUSG00000003484 Cyp4f18 1810054N16Rik|Cyp4f3|Cypf18 - 8|8 B3.3 cytochrome P450, family 4, subfamily f, polypeptide 18 protein-coding 110256 Tir2 - - 5 42.62 cM trypanosome infection response 2 unknown 360038 D17Jcs8 - - - DNA segment, Chr 17, John C. Schimenti 8 unknown 105246180 XR_876315 Gm41514 - - 16 C4|16 predicted gene, 41514 ncRNA 74689 Mm.399187 NR_040473 ENSMUSG00000100518 4930440C22Rik - - 1|1 D RIKEN cDNA 4930440C22 gene ncRNA 105243542 Gm39434 - - 9|9 predicted gene, 39434 ncRNA 72938 Mm.21787 NM_028394 ENSMUSG00000063172 Hspb11 2900042B11Rik|IFT25|PP25 - 4|4 C7 heat shock protein family B (small), member 11 protein-coding 102633264 XR_383357 Gm31131 - - 14 B|14 predicted gene, 31131 ncRNA 435314 Gm5655 EG435314 - 12|12 D2 ubiquitin specific peptidase 1 pseudogene pseudo 628351 Gm6869 EG628351 - 12|12 E predicted gene 6869 pseudo 102633136 Gm31040 - - 6|6 predicted gene, 31040 ncRNA 212862 Mm.288897 NM_144807 ENSMUSG00000060002 Chpt1 - - 10|10 C1 choline phosphotransferase 1 protein-coding 100036338 Wght5 - - - weight 5 unknown 16398 Mm.5007 NM_008396 ENSMUSG00000015533 Itga2 CD49B|DX5|GPIa - 13 D2.2|13 64.61 cM integrin alpha 2 protein-coding 20167 Mm.24142 NM_013648 ENSMUSG00000030401 Rtn2 MMS10-P|Ms10p|NSPLI|Nspl1 - 7 A3|7 9.54 cM reticulon 2 (Z-band associated protein) protein-coding 114732 Skull24 QTL-S17.1 - 17 12.53 cM skull morphology 24 unknown 105246706 XR_878520 Gm41952 - - 1 E4|1 predicted gene, 41952 ncRNA 270148 Gm5055 EG270148 - 9|9 A5.1 ribosomal protein S7 pseudogene pseudo 53622 Mm.347934 NM_016879 Krt85 AA589597|BB007925|Hb5|Krt2-18 - - keratin 85 protein-coding 28178 D16Ium32e D16Ium32 - - DNA segment, Chr 16, Indiana University Medical 32, expressed unknown 102637262 Gm34125 - - 6|6 predicted gene, 34125 ncRNA 22064 Mm.292904 NM_001109897 ENSMUSG00000100254 Trpc2 3010009O07Rik|AI115608|TRPC2a|TRPC2b|Trrp2|mTrp2|smTRPC2|trp2 - 7 E2|7 54.71 cM transient receptor potential cation channel, subfamily C, member 2 protein-coding 111460 Gln3-2 - - - GLN retrotransposon family 3-2 other 109648313 LOC109648313 - - - enhancer in intron 5 of Runx1 biological-region 22004 Mm.646 NM_009416 ENSMUSG00000028464 Tpm2 Tpm-2|Trop-2 - 4|4 A5 tropomyosin 2, beta protein-coding 407815 Mm.415343 BC049987 - - - cDNA sequence BC049987 protein-coding 12478 Mm.4360 NM_009844 ENSMUSG00000030724 Cd19 AW495831 - 7 F3|7 69.01 cM CD19 antigen protein-coding 12757 Mm.298875 NM_016760 ENSMUSG00000028478 Clta AV026556|Lca - 4|4 B1 clathrin, light polypeptide (Lca) protein-coding 102638160 Gm34789 - - 13|13 predicted gene, 34789 ncRNA 110298 Ftl1-rs7 - - - ferritin light chain 1, related sequence 7 protein-coding 100043880 Gm14248 - - 2|2 H1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 pseudogene pseudo 71285 Mm.76818 NR_045855 ENSMUSG00000109106 4933430H16Rik - - 7|7 D3 RIKEN cDNA 4933430H16 gene ncRNA 75860 Mm.159605 NM_029464 ENSMUSG00000029660 Tex26 4930588N13Rik - 5|5 G3 testis expressed 26 protein-coding 109534 Tanidd2 - - 13 59.69 cM TallyHo associated non-insulin dependent diabetes mellitus 2 unknown 110155 Igk-Pc - - - immunoglobulin kappa chain Pc other 108167446 XR_001778209 Gm45993 - - 7 D3|7 predicted gene, 45993 ncRNA 170441 Mm.34147 NM_130451 ENSMUSG00000027661 Slc2a10 AA450473|Glut10 - 2 H3|2 85.66 cM solute carrier family 2 (facilitated glucose transporter), member 10 protein-coding 638345 Mm.46428 NM_001077421 ENSMUSG00000024125 Sbpl 2310068J22Rik - 17|17 A3.3 spermine binding protein-like protein-coding 102634420 XR_387954 Gm32005 Gm45905 - 8 D1|8 predicted gene, 32005 ncRNA 102465704 NR_106081 ENSMUSG00000098406 Mir7222 Gm27413|mmu-mir-7222 - 2|2 E1 microRNA 7222 ncRNA 100042565 XM_011251047 Gm20928 - - Y|Y A1 predicted gene, 20928 protein-coding 100041774 Mm.360540 NM_029288 ENSMUSG00000095533 Gm10413 100038846|1700001E04Rik|Gm1973 - 14|14 A1 predicted gene 10413 protein-coding 105243672 XR_882286 Gm39503 - - X A3.3|X predicted gene, 39503 ncRNA 75996 Mm.399754 NR_131041 ENSMUSG00000097910 5033428I22Rik - - 8|8 B2 RIKEN cDNA 5033428I22 gene ncRNA 71268 Mm.302287 NM_027742 ENSMUSG00000032497 Lrrfip2 5133400F20Rik|AI850587 - 9|9 F3 leucine rich repeat (in FLII) interacting protein 2 protein-coding 19288 Mm.276776 NM_008987 ENSMUSG00000027832 Ptx3 AI607804|TSG-14 - 3 E1|3 30.25 cM pentraxin related gene protein-coding 360047 D17Jcs98 - - - DNA segment, Chr 17, John C. Schimenti 98 unknown 102639090 XR_381712 Gm35488 - - 12 C3|12 predicted gene, 35488 ncRNA 382255 Mm.336320 NR_046015 ENSMUSG00000086860 Gm1720 - - X|X F5 predicted gene 1720 ncRNA 102635 Mm.445090 AL022780 - - - expressed sequence AL022780 unknown 61356 D4Mit157 - - 4 67.76 cM DNA segment, Chr 4, Massachusetts Institute of Technology 157 unknown 780883 Ighv1-22 Gm16860 - 12|12 F2 immunoglobulin heavy variable 1-22 other 102640640 XR_391270 Gm36656 - - 7 B2|7 predicted gene, 36656 ncRNA 102465987 NR_106074 ENSMUSG00000105329 Mir7215 mmu-mir-7215 - 10|10 B4 microRNA 7215 ncRNA 102639192 XR_381949 Gm35558 - - 12 F1|12 predicted gene, 35558 ncRNA 16205 Mm.252599 NM_008376 ENSMUSG00000090019 Gimap1 IAP38|Imap38|imap - 6|6 B2.3 GTPase, IMAP family member 1 protein-coding 102638415 Gm28464 - - Y|Y predicted gene 28464 ncRNA 790913 Mm.406752 NR_045450 ENSMUSG00000086321 Gm11413 - - 4 C3|4 predicted gene 11413 ncRNA 104163 Lyx2 Lyx-2 - - lymphocyte antigen X 2 protein-coding 102467252 n-TRtcg5 n-Tr19 - 7 D2|7 nuclear encoded tRNA arginine 5 (anticodon TCG) tRNA 100042610 Gm3928 - - X|X D tubulin, alpha 4A pseudogene pseudo 634881 Gm7146 EG634881 - X|X E1 predicted pseudogene 7146 protein-coding 64697 Mm.218561 NM_029550 ENSMUSG00000024694 Keg1 0610008P16Rik|AI316519|GS4059 - 19|19 A kidney expressed gene 1 protein-coding 12331 Mm.8687 NM_007598 ENSMUSG00000028656 Cap1 - - 4|4 D2.2 CAP, adenylate cyclase-associated protein 1 (yeast) protein-coding 108168136 n-TSaga6 Trnas-aga|n-Ts6 - 13 A3.1|13 nuclear encoded tRNA serine 6 (anticodon AGA) tRNA 234723 Mm.37667 NM_175646 ENSMUSG00000031723 Txnl4b AI595343|D530025J19Rik|DLP|Dim2 - 8|8 D3 thioredoxin-like 4B protein-coding 223838 Mm.214132 NM_177431 ENSMUSG00000022449 Adamts20 Adamst20|bt - 15 E3|15 48.2 cM a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20 protein-coding 74066 Mm.61161 NM_028739 ENSMUSG00000116096 4933404G15Rik 4933401J20Rik - 16|16 A3 RIKEN cDNA 4933404G15 gene ncRNA 22144 Mm.270295 NM_009446 ENSMUSG00000067702 Tuba3a AI528779|M[a]3|Tuba3 - 6|6 F3 tubulin, alpha 3A protein-coding 100038860 Mm.377394 NM_207175 ENSMUSG00000093884 Olfr239 MOR267-10 - 17|17 B1 olfactory receptor 239 protein-coding 74480 Mm.214454 NM_028966 ENSMUSG00000021838 Samd4 1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk - 14|14 C1 sterile alpha motif domain containing 4 protein-coding 22648 Mm.135067 NM_172462 ENSMUSG00000051034 Zfp11 6720465D24|Krox-6|Zfp-11 - 5|5 G1.3 zinc finger protein 11 protein-coding 100418024 Gm11446 - - 2|2 H2 sodium channel, voltage-gated, type VII, alpha pseudogene pseudo 61665 D7Mit230 - - 7 31.44 cM DNA segment, Chr 7, Massachusetts Institute of Technology 230 unknown 102640662 XR_388859 Gm12343 Gm36676 - 11 B5|11 predicted gene 12343 ncRNA 78012 4930473D10Rik - - 10|10 D2 RIKEN cDNA 4930473D10 gene protein-coding 269870 Mm.62083 NM_175558 ENSMUSG00000033961 Zfp446 A630035I11Rik|A930031C22|AA120513|AV306632 - 7|7 A1 zinc finger protein 446 protein-coding 330350 Mm.246787 NR_046180 ENSMUSG00000108356 9130221F21Rik 9130221F21 - 6|6 C1 RIKEN cDNA 9130221F21 gene ncRNA 100417132 Gm18414 - - 8|8 A4 tryptophanyl-tRNA synthetase pseudogene pseudo 100861493 NR_046146 ENSMUSG00000094760 n-R5s139 Rn5s22 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 139 rRNA 67475 Mm.358706 NM_026184 ENSMUSG00000057069 Ero1lb 1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta - 13|13 A1 ERO1-like beta (S. cerevisiae) protein-coding 72199 Mm.218940 NM_028152 ENSMUSG00000025159 Mms19 2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l - 19|19 C3 MMS19 (MET18 S. cerevisiae) protein-coding 240255 Mm.244482 NM_001163013 ENSMUSG00000034653 Ythdc2 3010002F02Rik|BC037178 - 18|18 B3 YTH domain containing 2 protein-coding 100035275 Chlq1 - - 1 80.33 cM circulating hormone level QTL 1 unknown 237943 Mm.260282 NM_001159492 ENSMUSG00000034621 Gpatch8 5430405G24Rik|AU018890|Fbm1|Gpatc8|mKIAA0553 - 11|11 D-E1 G patch domain containing 8 protein-coding 110693 Prkch-rs2 Pkch-rs2 - - protein kinase C, eta, related sequence 2 protein-coding 102640760 XR_381308 Gm36752 - - 12 A1.1|12 predicted gene, 36752 ncRNA 76639 Mm.375609 NR_036593 ENSMUSG00000092066 1700121N20Rik - - 12|12 F1 RIKEN cDNA 1700121N20 gene ncRNA 387162 NR_029556 ENSMUSG00000065401 Mir144 Mirn144|mir-144|mmu-mir-144 - 11|11 B5 microRNA 144 ncRNA 100504446 Mm.46157 NM_001195673 ENSMUSG00000090273 Prr22 Gm546 - 17|17 D proline rich 22 protein-coding 70864 Mm.66681 NM_001164739 ENSMUSG00000078315 Fam47c 4921509A18Rik|Fam47a|Fam47a-ps - X|X B family with sequence similarity 47, member C protein-coding 19989 Mm.319659 NM_011291 ENSMUSG00000043716 Rpl7 Rpl7a|Surf-3 - 1|1 A3 ribosomal protein L7 protein-coding 102467356 n-TMcat7 n-Tm7 - 13 A3.1|13 nuclear encoded tRNA methionine 7 (anticodon CAT) tRNA 102632257 XR_391621 Gm30384 - - 7 D1|7 predicted gene, 30384 ncRNA 668925 Gm14143 - - 2|2 G3 predicted gene 14143 pseudo 72237 1700007M16Rik - - 2|2 RIKEN cDNA 1700007M16 gene protein-coding 102638098 Gm34743 - - 18 A2|18 predicted gene, 34743 pseudo 217409 Gm4804 EG217409 - 12|12 A1.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 106393 Mm.35811 NM_175347 ENSMUSG00000022519 Srl 9830004M20Rik|AW108387|sar - 16|16 A1 sarcalumenin protein-coding 665303 Vmn2r-ps117 EG665303 - 17|17 A3.2 vomeronasal 2, receptor, pseudogene 117 pseudo 56293 Mm.6211 NM_019871 ENSMUSG00000018776 Slc35g3 Amac1 - 11|11 B3 solute carrier family 35, member G3 protein-coding 232976 Mm.41568 NM_175477 ENSMUSG00000045252 Zfp574 A630056B21Rik|Znf574 - 7|7 A3 zinc finger protein 574 protein-coding 105244355 Gm39980 - - 2|2 predicted gene, 39980 ncRNA 668757 Gm9336 EG668757 - 14|14 E3 N(alpha)-acetyltransferase 20, NatB catalytic subunit pseudogene pseudo 226594 Mm.265552 NM_178593 ENSMUSG00000040723 Rcsd1 A430105K13Rik|BC025872|CapZIP - 1|1 H2.3 RCSD domain containing 1 protein-coding 15126 Mm.141758 NM_010405 ENSMUSG00000055609 Hba-x AI450015|Hbz - 11 A4|11 18.86 cM hemoglobin X, alpha-like embryonic chain in Hba complex protein-coding 102632047 Gm30222 - - 5|5 predicted gene, 30222 ncRNA 102634878 XR_384790 Gm32356 - - 16 B2|16 predicted gene, 32356 ncRNA 62454 D13Mit308 - - 13 23.28 cM DNA Segment, Chr 13 Massachusetts Institute of Technology 308 unknown 258158 Mm.378636 NM_001011855 ENSMUSG00000068535 Olfr169 MOR273-3P - 16|16 A3 olfactory receptor 169 protein-coding 433968 XR_868740 Gm5566 EG433968 - 5|5 G3 predicted pseudogene 5566 pseudo 105245928 XR_875178 Gm41306 - - 15 B3.1|15 predicted gene, 41306 ncRNA 100417251 Gm13898 - - 6|6 A2 four and a half LIM domains 3 pseudogene pseudo 28140 DYzEms11 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 11 unknown 102632006 LOC102632006 - - 2 G3 eukaryotic translation initiation factor 4E-binding protein 1 pseudogene pseudo 100418145 Gm19033 - - 7|7 E3 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 100043144 Gm4259 - - 7|7 F3 ribosomal protein L7A pseudogene pseudo 102634418 XR_382481 Gm32003 - - 13 B1|13 predicted gene, 32003 ncRNA 724112 Mm.487828 XR_105474 BC106175 - - 12 A1.1|12 cDNA sequence BC106175 unknown 100039834 Mm.331736 NM_001099315 Gm12790 - - 4|4 C6 predicted gene 12790 unknown 67951 Mm.181860 NM_026473 ENSMUSG00000001473 Tubb6 2310057H16Rik|BB220206 - 18|18 E1 tubulin, beta 6 class V protein-coding 667558 XR_141259 Gm8702 EG667558 - 15|15 E3 predicted gene 8702 pseudo 100503822 LOC100503822 - - - uncharacterized LOC100503822 protein-coding 67629 Mm.295642 NM_026282 ENSMUSG00000074476 Spc24 2410030K01Rik|AV109292|Spbc24 - 9|9 A3 SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae) protein-coding 66069 Mm.220984 NM_178374 ENSMUSG00000055334 Snupn 0610031A09Rik|Rnut1|Snupn1 - 9|9 B snurportin 1 protein-coding 111367 L1M3 - - - L1 repeat found in H2-M3 other 666373 Dppa5c - - 9|9 E1 developmental pluripotency associated 5C pseudo 102634202 XR_378836 Gm31843 - - 8 A2|8 predicted gene, 31843 ncRNA 61624 D8Mit270 - - 8 58.7 cM DNA segment, Chr 8, Massachusetts Institute of Technology 270 unknown 71153 Mm.398340 NR_045842 ENSMUSG00000101360 4933417O13Rik - - 7|7 F5 RIKEN cDNA 4933417O13 gene ncRNA 100417047 Gm13323 - - 2|2 A3 predicted gene 13323 pseudo 94242 Mm.15801 NM_023476 ENSMUSG00000028776 Tinagl1 1110021J17Rik|AZ-1|AZ1|Arg1|Lcn7|TARP|Tinagl - 4|4 D2.2 tubulointerstitial nephritis antigen-like 1 protein-coding 353169 Mm.473705 NM_178934 ENSMUSG00000037490 Slc2a12 GLUT-12|Glut12 - 10|10 A3 solute carrier family 2 (facilitated glucose transporter), member 12 protein-coding 102465574 NR_105916 ENSMUSG00000099110 Mir6951 Gm27765|mmu-mir-6951 - 15|15 B3.1 microRNA 6951 ncRNA 100040794 Gm2970 - - X|X E3 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 105245137 XR_871600 Gm40630 - - 10 B2|10 predicted gene, 40630 ncRNA 61266 D2Mit186 - - 2 51.37 cM DNA segment, Chr 2, Massachusetts Institute of Technology 186 unknown 21024 T(1;7)49H T49H - - reciprocal translocation, Chr 1 and 7, Harwell 49 other 20832 Mm.831 NM_009279 ENSMUSG00000002014 Ssr4 AW743063|C78062|SSR-delta|TRAP-delta|Trap - X A7.3|X 37.41 cM signal sequence receptor, delta protein-coding 100732 Mm.332295 NM_133350 ENSMUSG00000029166 Mapre3 AI790651|EB2|EB3|EBF3|RP3 - 5|5 B1 microtubule-associated protein, RP/EB family, member 3 protein-coding 102639282 Mm.421403 XR_866052 Gm35630 - - 2 A3|2 predicted gene, 35630 ncRNA 68813 Mm.258155 NM_177780 ENSMUSG00000044447 Dock5 1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc - 14|14 D1 dedicator of cytokinesis 5 protein-coding 75155 Mm.399239 NR_040457 ENSMUSG00000115271 4930529K09Rik 4930507G21Rik - 14|14 E1 RIKEN cDNA 4930529K09 gene ncRNA 102614 Mm.274421 NM_133982 ENSMUSG00000062309 Rpp25 AI851155 - 9|9 B ribonuclease P/MRP 25 subunit protein-coding 100035252 Sdtq3 L2 - - skull development traits QTL 3 unknown 78805 Mm.78702 NR_040517 ENSMUSG00000085247 4930545L23Rik - - 2|2 F3 RIKEN cDNA 4930545L23 gene ncRNA 100040509 XM_006542442 Gm20845 - - Y|Y D predicted gene, 20845 protein-coding 67620 Mm.383914 NM_026278 ENSMUSG00000031637 Lrp2bp 1700113N17Rik|2310006J04Rik|4930479L12Rik|MegBP - 8|8 B1.1 Lrp2 binding protein protein-coding 211378 Mm.247448 NM_173381 ENSMUSG00000072066 6720489N17Rik 9330128I06 - 13|13 B3 RIKEN cDNA 6720489N17 gene protein-coding 109865 Ly33 Ly-33 - - lymphocyte antigen 33 protein-coding 240476 Mm.329575 NM_001033341 ENSMUSG00000048410 Zfp407 6430585N13Rik|Gm333|Gm334|Gm948|ZNF407 - 18|18 E4 zinc finger protein 407 protein-coding 100042388 Gm11361 - - 13|13 A3.1 ribosomal protein S18 pseudogene pseudo 112370 Pabr2 Abrg2 - 4 42.13 cM plasma apolipoprotein B (human) regulator 2 unknown 108168615 XM_017318822 LOC108168615 - - Y B Y-linked testis-specific protein 1-like protein-coding 102632555 XM_006503503 Gm12873 - - 4 D2.2|4 57.26 cM predicted gene 12873 protein-coding 109280083 LOC109280083 Mm768 - - VISTA enhancer mm768 biological-region 93913 D16Jhu51 167C20.T7 - - DNA segment, Chr 16, Johns Hopkins University 51 unknown 17777 Mm.2941 NM_008642 ENSMUSG00000028158 Mttp 1810043K16Rik|MTP - 3 G3|3 64.06 cM microsomal triglyceride transfer protein protein-coding 100417016 Gm16318 - - 13|13 C3 high mobility group box 1 pseudogene pseudo 329274 Mm.150857 NM_177838 ENSMUSG00000015484 Fam163a A230106N23Rik - 1|1 G3 family with sequence similarity 163, member A protein-coding 102631925 Mm.445755 Gm12289 - - 11|11 39.47 cM predicted gene 12289 ncRNA 78697 Mm.58660 NM_178403 ENSMUSG00000057541 Pus7 C330017I15Rik - 5|5 A3 pseudouridylate synthase 7 protein-coding 330286 Mm.277163 NM_194061 ENSMUSG00000063455 D630045J12Rik Kiaa1549|mKIAA1549 - 6|6 B1 RIKEN cDNA D630045J12 gene protein-coding 100302294 Ang-ps2 Gm16544 - 14|14 C1 angiogenin, ribonuclease A family, pseudogene 2 pseudo 102632120 Gm30276 - - 7|7 predicted gene, 30276 pseudo 102632654 Mm.391012 XR_385634 Gm16555 - - 17 C|17 25.86 cM predicted gene 16555 ncRNA 78424 9530032E18Rik - - 17|17 RIKEN cDNA 9530032E18 gene protein-coding 100862082 Gm21461 - - 5 E1|5 predicted gene, 21461 pseudo 62524 D11Mit140 - - 11 32.13 cM DNA segment, Chr 11, Massachusetts Institute of Technology 140 unknown 56640 Mm.42080 NM_019928 ENSMUSG00000006948 Klk4 ESMP1|KLK-L1|PSTS|Prss17 - 7 B3|7 28.35 cM kallikrein related-peptidase 4 (prostase, enamel matrix, prostate) protein-coding 317757 Mm.455917 NM_175035 ENSMUSG00000043505 Gimap5 D630024P16|E230026N22Rik - 6|6 B2.3 GTPase, IMAP family member 5 protein-coding 259055 Mm.377812 NM_147053 ENSMUSG00000073961 Olfr582 MOR30-3 - 7|7 E3 olfactory receptor 582 protein-coding 100418143 Gm19031 - - 5|5 B3 dyskeratosis congenita 1, dyskerin homolog pseudogene pseudo 67664 Mm.45980 NM_026301 ENSMUSG00000033107 Rnf125 4930553F04Rik - 18|18 A2 ring finger protein 125 protein-coding 67642 Mm.482535 NM_175120 ENSMUSG00000092183 4930515G01Rik - - 5|5 F RIKEN cDNA 4930515G01 gene ncRNA 100503915 Mm.393455 NM_001195537 ENSMUSG00000071724 Smpd5 Gm10345|MA-nSMase - 15|15 D3 sphingomyelin phosphodiesterase 5 protein-coding 102639378 Mm.55702 Gm35705 - - 6|6 predicted gene, 35705 ncRNA 215974 Gm4795 EG215974 - 10|10 B2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102635056 Gm32488 - - 18|18 predicted gene, 32488 ncRNA 245906 Dilp4 - - - dilated pupils 4 unknown 404578 AL118440 - - - expressed sequence AL118440 unknown 359966 DXMgc103 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 103 unknown 21054 T(10;18)21Ad T21Ad - - reciprocal translocation, Chr 10 and 18, Adler 21 other 76017 5830411K02Rik - - 5|5 RIKEN cDNA 5830411K02 gene protein-coding 100035670 Orgwt5 - - - organ weight 5 unknown 100035669 Orgwt1 - - - organ weight 1 unknown 330406 Mm.321840 NM_198884 ENSMUSG00000041372 B4galnt3 AB114826|B4GalNAcT3|C330047A21 - 6|6 F1 beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding 72877 Mm.250641 2900003A17Rik - - 12|12 RIKEN cDNA 2900003A17 gene protein-coding 51973 DXGgc1e - - - DNA segment, Chr X, G. Consalez 1, expressed unknown 216144 Mm.246574 NM_175936 ENSMUSG00000055515 Vmn2r81 EC1-V2R|EC1-VR2|V2rf2 - 10|10 C1 vomeronasal 2, receptor 81 protein-coding 224020 Mm.5718 NM_001001983 ENSMUSG00000041720 Pi4ka Pik4ca - 16|16 A3 phosphatidylinositol 4-kinase alpha protein-coding 105242900 Mm.89010 XR_881932 Gm38983 - - 7 B1|7 predicted gene, 38983 ncRNA 100417059 Gm18390 - - 5|5 G1.3 shugoshin-like 2 pseudogene pseudo 110508 Egr5-rs - - - early growth response 5, related sequence protein-coding 58250 Mm.360747 NM_021439 ENSMUSG00000034612 Chst11 1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s - 10|10 C1 carbohydrate sulfotransferase 11 protein-coding 667630 Gm8737 EG667630 - X|X F4 SEC22 vesicle trafficking protein homolog B pseudogene pseudo 67550 Mm.158159 NR_138559 4933416O17Rik - - 13|13 C1 RIKEN cDNA 4933416O17 gene ncRNA 102636790 XR_387316 Gm33764 - - 1 E2.3|1 predicted gene, 33764 ncRNA 102634514 Gm32077 - - 2|2 predicted gene, 32077 ncRNA 17254 Mm.4114 NM_008577 ENSMUSG00000010095 Slc3a2 4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE - 19 A|19 5.44 cM solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 protein-coding 69495 Mm.271181 NR_040531 ENSMUSG00000100759 1700029B22Rik - - 7|7 F3 RIKEN cDNA 1700029B22 gene ncRNA 100526530 NR_037207 ENSMUSG00000105972 Mir1843a Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a - 12 C3|12 36.67 cM microRNA 1843a ncRNA 19023 Mm.87155 NM_011148 ENSMUSG00000029410 Ppef2 - - 5|5 E2 protein phosphatase, EF hand calcium-binding domain 2 protein-coding 18551 Mm.299916 NM_008793 ENSMUSG00000020131 Pcsk4 AI647044|L21221|NEC 3|NEC3|PC4|SPC5 - 10 C1|10 39.72 cM proprotein convertase subtilisin/kexin type 4 protein-coding 108168019 XR_001780656 Gm46368 - - 12 D1|12 predicted gene, 46368 ncRNA 56802 Mm.125770 NR_002846 ENSMUSG00000086537 Nespas Gnas-as|Nespos - 2 H4|2 97.89 cM neuroendocrine secretory protein antisense ncRNA 667598 Gm8719 EG667598 - 6|6 F3 peptidyl prolyl isomerase H pseudogene pseudo 258276 Mm.390137 NM_146279 ENSMUSG00000059867 Olfr960 MOR224-12 - 9|9 A5.1 olfactory receptor 960 protein-coding 100039376 Gapdh-ps14 Gm2193 - 8 A4|8 glyceraldehyde-3-phosphate dehydrogenase, pseudogene 14 pseudo 71532 Mm.40216 NM_001081289 ENSMUSG00000070476 Fam217b 9030418K01Rik|AI851938 - 2|2 H4 family with sequence similarity 217, member B protein-coding 56692 Mm.331392 NM_019920 ENSMUSG00000091512 Lamtor3 AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1 - 3|3 G3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding 102633693 XR_378203 Gm31455 - - 6 B2.3|6 predicted gene, 31455 ncRNA 100885826 NR_049187 ENSMUSG00000093498 Mir5615-2 Gm23367|mir-5615-2|mmu-mir-5615-2 - 10|10 C1 microRNA 5615-2 ncRNA 100038573 Mm.483262 Gm10864 - - - predicted gene 10864 unknown 100035127 Aaj1 - - - anxiety in A/J 1 unknown 83493 Mm.273671 NM_030692 ENSMUSG00000025240 Sacm1l SAC1|Sac1p|mKIAA0851 - 9 F4|9 74.08 cM SAC1 suppressor of actin mutations 1-like (yeast) protein-coding 108809 Mm.250313 NR_045819 4933407E24Rik - - 4|4 D2.2 RIKEN cDNA 4933407E24 gene ncRNA 102636407 XR_380840 Gm33481 - - 10 D2|10 predicted gene, 33481 ncRNA 69666 Mm.24788 NM_001101430 ENSMUSG00000071451 Psmg4 PAC-4|mPAC4 - 13|13 A3.3 proteasome (prosome, macropain) assembly chaperone 4 protein-coding 67219 Mm.45929 NM_026039 ENSMUSG00000066042 Med18 2810046C01Rik - 4|4 D2.3 mediator complex subunit 18 protein-coding 12226 Mm.23811 NM_007569 ENSMUSG00000036478 Btg1 AI426953|AW546738 - 10|10 C3 B cell translocation gene 1, anti-proliferative protein-coding 109343 Mm.412020 C330020G15Rik - - 11|11 RIKEN cDNA C330020G15 gene protein-coding 106205 Mm.226860 NM_145931 ENSMUSG00000037965 Zc3h7a A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7 - 16|16 A1 zinc finger CCCH type containing 7 A protein-coding 544884 Gm5789 - - 12|12 D2 SET translocation pseudogene pseudo 102633348 XR_389003 Gm31194 - - 11 D|11 predicted gene, 31194 ncRNA 319963 9330119M13Rik - - X|X E3 RIKEN cDNA 9330119M13 gene unknown 14911 Mm.781 NM_008188 ENSMUSG00000030264 Thumpd3 AW556087|Gt(ROSA)26asSor|Gtrosa26as - 6 E3|6 52.73 cM THUMP domain containing 3 protein-coding 110051 Kis1 - - - Kaplan integration site 1 protein-coding 63009 D19Mit128 - - 19 12.66 cM DNA Segment, Chr 19, Massachusetts Institute of Technology 128 unknown 29867 Mm.38551 NM_013879 ENSMUSG00000029544 Cabp1 caldendrin - 5|5 F calcium binding protein 1 protein-coding 105245142 XR_871619 Gm40635 - - 10 B2|10 predicted gene, 40635 ncRNA 20443 Mm.275973 NM_009178 ENSMUSG00000032038 St3gal4 SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c - 9|9 A4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 102633129 XR_387651 Gm31034 - - 5 F|5 predicted gene, 31034 ncRNA 105243460 XR_870938 Gm39376 - - 9 E1|9 predicted gene, 39376 ncRNA 105246 Mm.278509 NM_001024508 ENSMUSG00000057649 Brd9 AL022779 - 13|13 C1 bromodomain containing 9 protein-coding 667864 Gm8849 EG667864 - 15|15 E3 predicted gene 8849 pseudo 394436 Mm.300095 NM_201645 ENSMUSG00000089960 Ugt1a1 Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1 - 1 D|1 44.55 cM UDP glucuronosyltransferase 1 family, polypeptide A1 protein-coding 668129 Gm8990 EG668129|Gm20278 - 13|13 D2.1 neuroepithelial cell transforming gene 1 pseudogene pseudo 52829 Mm.273986 NM_026821 ENSMUSG00000048706 Lurap1l 1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1 - 4 C3|4 37.91 cM leucine rich adaptor protein 1-like protein-coding 664801 Gm7346 EG664801 - 8 A1.1|8 predicted gene 7346 pseudo 100039426 Gm2229 - - 3|3 C ribosomal protein, large, P0 pseudogene pseudo 212276 Mm.422831 NM_183145 ENSMUSG00000095432 Zfp748 KRAB-O|Rslcan20/21|Zfp208|mszf54 - 13|13 B3 zinc finger protein 748 protein-coding 102635711 XR_386592 Gm32979 - - 19 B|19 predicted gene, 32979 ncRNA 17524 Mm.391267 NM_008621 ENSMUSG00000031402 Mpp1 55kDa|C130070C03Rik|p55 - X A7.3|X 38.15 cM membrane protein, palmitoylated protein-coding 100628625 NR_039559 ENSMUSG00000092734 Mir5100 mir-5100|mmu-mir-5100|mu-mir-5100 - 11 B2|11 37.81 cM microRNA 5100 ncRNA 266620 Mm.330669 NM_001037247 ENSMUSG00000044863 Defb36 BD-36|Defb123|mBD-36 - 2|2 H1 defensin beta 36 protein-coding 102639580 XR_379174 Gm35860 - - 9 A3|9 predicted gene, 35860 ncRNA 100418337 Gm19147 - - 3|3 F3 TIP41, TOR signalling pathway regulator-like pseudogene pseudo 102635140 Gm28943 - - Y|Y predicted gene 28943 ncRNA 102635379 Mm.137042 XR_389466 Gm32736 - - 5 E5|5 predicted gene, 32736 ncRNA 72655 Mm.21798 NR_040721 ENSMUSG00000097195 Snhg5 2810026P18Rik|4933428I09Rik|mU50HG-b - 9|9 E3.1 small nucleolar RNA host gene 5 ncRNA 77253 9430031K09Rik - - 12|12 RIKEN cDNA 9430031K09 gene protein-coding 404559 AL118225 - - - expressed sequence AL118225 unknown 100045766 Gm10126 - - 13|13 C1 ribosomal protein S29 pseudogene pseudo 12386 Mm.34637 NM_009819 ENSMUSG00000063063 Ctnna2 AI481747|Catna|Catna2|cdf|chp - 6 C3|6 33.54 cM catenin (cadherin associated protein), alpha 2 protein-coding 192160 Mm.40120 NM_138660 ENSMUSG00000078676 Casc3 Btz|Mln51 - 11|11 D cancer susceptibility candidate 3 protein-coding 27856 D0Nds14 - - - DNA segment, Nuffield Department of Surgery 14 unknown 407804 Mm.263191 BC051077 - - - cDNA sequence BC051077 ncRNA 102641836 XR_870732 Gm38579 - - 9 A5.3|9 predicted gene, 38579 ncRNA 67711 Mm.4467 NM_026330 ENSMUSG00000030750 Nsmce1 2510027N19Rik - 7|7 F3 NSE1 homolog, SMC5-SMC6 complex component protein-coding 237911 Mm.186143 NM_178309 ENSMUSG00000034329 Brip1 3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF - 11|11 C BRCA1 interacting protein C-terminal helicase 1 protein-coding 258952 Mm.377767 NM_146950 ENSMUSG00000075387 Olfr341 MOR136-2 - 2|2 B olfactory receptor 341 protein-coding 100040595 Gm20847 - - Y|Y predicted gene, 20847 protein-coding 100039904 Mm.399262 XM_011251106 Gm20819 - - Y|Y E predicted gene, 20819 protein-coding 100043197 Trav12d-2 Gm10888 - 14|14 C2 T cell receptor alpha variable 12D-2 other 105246859 Gm42070 - - 11|11 predicted gene, 42070 ncRNA 619288 Mm.61148 NM_001109759 ENSMUSG00000091017 Fam71a 4933417M04Rik|GARI-L4 - 1|1 H6 family with sequence similarity 71, member A protein-coding 102640484 Mm.136152 XR_383343 Gm28651 - - 14 B|14 predicted gene 28651 ncRNA 257919 Mm.377303 NM_001005488 ENSMUSG00000066242 Olfr467 GA_x5J8B7W6B6J-2556603-2556836|MOR204-33P - 7|7 E3 olfactory receptor 467 protein-coding 102636341 XR_390465 Gm33434 - - 4 A5|4 predicted gene, 33434 ncRNA 223753 Mm.222685 NM_145475 ENSMUSG00000035891 Cerk AI848610|D330016D08Rik|mKIAA1646 - 15|15 E2 ceramide kinase protein-coding 112207 Scc9 - - 10 64.71 cM colon tumor susceptibility 9 unknown 68465 Mm.291826 NM_197985 ENSMUSG00000030168 Adipor2 1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2 - 6 F1|6 56.78 cM adiponectin receptor 2 protein-coding 102637547 XR_380563 ENSMUSG00000112028 Gm34328 - - 10 B5.3|10 predicted gene, 34328 ncRNA 105245442 Gm40896 - - 12|12 predicted gene, 40896 ncRNA 53624 Mm.281896 NM_016887 ENSMUSG00000018569 Cldn7 - - 11|11 B3 claudin 7 protein-coding 211135 Mm.294970 NM_172491 ENSMUSG00000079038 D130040H23Rik - - 8|8 B3.3 RIKEN cDNA D130040H23 gene protein-coding 330483 Mm.260192 NM_001033419 ENSMUSG00000014686 Ceacam16 Gm769 - 7|7 A3 carcinoembryonic antigen-related cell adhesion molecule 16 protein-coding 66945 Mm.158231 NM_023281 ENSMUSG00000021577 Sdha 1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF - 13|13 C1 succinate dehydrogenase complex, subunit A, flavoprotein (Fp) protein-coding 78781 Mm.25243 NM_028421 ENSMUSG00000029826 Zc3hav1 1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP - 6 B1|6 17.72 cM zinc finger CCCH type, antiviral 1 protein-coding 97787 C76872 - - - expressed sequence C76872 unknown 102633791 XR_001782262 Gm31532 - - 17 C|17 predicted gene, 31532 protein-coding 667192 Gm13294 - - 2|2 A1 zinc finger and BTB domain containing 2 pseudogene pseudo 62134 D13Mit63 - - 13 21.0 cM DNA segment, Chr 13, Massachusetts Institute of Technology 63 unknown 101232 AU015536 - - - expressed sequence AU015536 protein-coding 11727 Mm.202665 NM_007447 ENSMUSG00000072115 Ang AI385586|Ang1|Rnase5|Rnase5a - 14 C1|14 26.37 cM angiogenin, ribonuclease, RNase A family, 5 protein-coding 102467613 n-TYgta3 n-Ty3 - 13 A3.1|13 nuclear encoded tRNA tyrosine 3 (anticodon GTA) tRNA 547334 Mm.434606 NR_131139 ENSMUSG00000089833 Fhitos Gm16542 - 14|14 A1 fragile histidine triad gene, opposite strand ncRNA 68644 Mm.268925 NM_145919 ENSMUSG00000042210 Abhd14a 1110013B16Rik|AW558221|Dorz1 - 9|9 F1 abhydrolase domain containing 14A protein-coding 102634809 XR_383272 Gm32307 - - 14 A3|14 predicted gene, 32307 ncRNA 102636583 Gm33606 - - 5|5 predicted gene, 33606 ncRNA 97373 C79709 - - - expressed sequence C79709 unknown 105244683 XR_868133 Gm40245 - - 4 D2.2|4 predicted gene, 40245 ncRNA 100418157 Gm13517 - - 2|2 C1.1 eukaryotic translation initiation factor 4, gamma 1 pseudogene pseudo 668733 Mm.461873 NR_136919 Gm13884 - - 2|2 E2 SWIM type zinc finger 7 associated protein 1 pseudogene pseudo 94279 Mm.296837 NM_053196 ENSMUSG00000025036 Sfxn2 C79732|F630107H02Rik - 19|19 C3 sideroflexin 2 protein-coding 54446 Mm.390057 NM_018823 ENSMUSG00000003847 Nfat5 AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz - 8 D3|8 53.93 cM nuclear factor of activated T cells 5 protein-coding 75204 Mm.195597 XR_882339 Orly 4930529H12Rik|4933412F11Rik|Asty(rec) - Y D|Y oppositely-transcribed, rearranged locus on the Y protein-coding 215113 Mm.11186 NM_173388 ENSMUSG00000038178 Slc43a2 7630402D21Rik|BC042513|Lat4 - 11|11 B5 solute carrier family 43, member 2 protein-coding 62387 D16Mit100 - - 16 7.1 cM DNA segment, Chr 16, Massachusetts Institute of Technology 100 unknown 100417778 Gm12509 - - 4|4 B2 splicing factor, arginine/serine-rich 7 pseudogene pseudo 71701 Mm.211131 NM_027869 ENSMUSG00000020464 Pnpt1 1200003F12Rik|Old35|PNPase|Pnptl1 - 11|11 A3.3 polyribonucleotide nucleotidyltransferase 1 protein-coding 112008 Dob2 Do2 - 9 59.33 cM dietary obesity 2 unknown 102640964 Mm.258924 XR_001781948 Gm36902 - - 16 A1|16 predicted gene, 36902 ncRNA 112075 Triglq2 - - - triglyceride QTL 2 unknown 100416954 Gm18335 - - 16|16 A3 calcyclin binding protein pseudogene pseudo 71371 Mm.440357 NM_023598 ENSMUSG00000019947 Arid5b 4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta - 10|10 B5.2 AT rich interactive domain 5B (MRF1-like) protein-coding 112308 Hcs1 Hcs - 7 43.46 cM hepatocarcinogenesis susceptibility 1 unknown 102635609 XR_381427 Gm32899 - - 12 A2|12 predicted gene, 32899 ncRNA 232910 Mm.333597 NM_198613 ENSMUSG00000008036 Ap2s1 AI043088 - 7|7 A2 adaptor-related protein complex 2, sigma 1 subunit protein-coding 628883 Serpina3e-ps 2B2|Gm6926|Serpina3e|spi2 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 3E, pseudogene pseudo 67774 Mm.41892 NM_026371 ENSMUSG00000042992 Borcs5 5830457J20Rik|AW124643|Loh12cr1 - 6|6 G1 BLOC-1 related complex subunit 5 protein-coding 217342 Mm.243950 NM_173755 ENSMUSG00000020802 Ube2o 9630022H21|B230113M03Rik|E2-230K|mKIAA1734 - 11|11 E2 ubiquitin-conjugating enzyme E2O protein-coding 105243227 XR_878955 Gm39205 - - 8 C1|8 predicted gene, 39205 ncRNA 100504713 Gm20368 - - 12|12 61.14 cM ubiquitin-conjugating enzyme E2 variant 1-like pseudo 102638747 XR_376046 Gm35237 - - 3 G1|3 predicted gene, 35237 ncRNA 68268 Mm.32047 NM_026647 ENSMUSG00000028403 Zdhhc21 9130404H11Rik|AL024349|D130004H04Rik|dep - 4 39.4 cM|4 C3 zinc finger, DHHC domain containing 21 protein-coding 14776 Mm.441856 NM_030677 ENSMUSG00000042808 Gpx2 GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI - 12 C3|12 33.73 cM glutathione peroxidase 2 protein-coding 102636996 XR_379507 ENSMUSG00000111354 Gm33914 - - 9 B|9 predicted gene, 33914 ncRNA 101942 AA409261 - - - expressed sequence AA409261 unknown 259158 Olfr1527-ps1 MOR8-6P - 7|7 E3 olfactory receptor 1527, pseudogene 1 pseudo 105244735 XR_868384 Gm40292 Gm43454 - 5 B3|5 predicted gene, 40292 ncRNA 108168302 XR_001781985 Gm46563 - - 16 A1|16 predicted gene, 46563 ncRNA 100127434 Gm10351 mszf19 - - predicted gene 10351 protein-coding 102638755 XR_387343 Gm35243 - - 1 E2.3|1 predicted gene, 35243 ncRNA 75924 NM_183114 4930566N20Rik - - 3|3 H4 RIKEN cDNA 4930566N20 gene unknown 100571 AI115602 - - - expressed sequence AI115602 unknown 100042971 Mm.389840 NM_001167161 ENSMUSG00000094762 Gm10670 Vmn1r102 - 7|7 A3 predicted gene 10670 protein-coding 70630 NM_027488 5730493B19Rik - - 9|9 F1 RIKEN cDNA 5730493B19 gene protein-coding 330837 Mm.246791 NM_177904 6030452D12Rik - - 8|8 D3 RIKEN cDNA 6030452D12 gene unknown 108168900 XR_001783985 Gm46825 - - 3 G3|3 predicted gene, 46825 ncRNA 257893 NM_001011744 Olfr105-ps MOR250-7|Olfr105 - 17|17 B1 olfactory receptor 105, pseudogene pseudo 100034760 Ses3 - - 15 34.16 cM salmonella enteritidis susceptibility 3 unknown 17758 Mm.217318 NM_008633 ENSMUSG00000032479 Map4 AA407148|MAP-4|Mtap-4|Mtap4 - 9 F2|9 59.83 cM microtubule-associated protein 4 protein-coding 675947 XM_017316340 LOC675947 - - 14|14 D2 multiple epidermal growth factor-like domains protein 6 protein-coding 258002 Olfr1119-ps1 MOR264-15P - 2|2 D olfactory receptor 1119, pseudogene 1 pseudo 268469 Mm.389038 NM_201609 ENSMUSG00000075595 Zfp652 9530033F24Rik|ZNF652 - 11|11 D zinc finger protein 652 protein-coding 100862450 LOC100862450 - - - H-2 class I histocompatibility antigen, D-37 alpha chain-like pseudo 52189 D1Ertd228e - - 1 8.55 cM DNA segment, Chr 1, ERATO Doi 228, expressed unknown 100504029 Mm.478537 NR_108026 ENSMUSG00000097167 Gm16740 - - 3 F2.1|3 40.74 cM predicted gene, 16740 ncRNA 102642877 XR_874660 Gm38641 - - 14 D1|14 predicted gene, 38641 ncRNA 100416326 Gm18041 - - 10|10 A4 predicted gene, 18041 pseudo 639545 Mm.478255 NR_033501 ENSMUSG00000091204 Gm7271 EG639545 - 5|5 C3.3 predicted gene 7271 pseudo 15447 hph1 hph-1 - - hyperphenylalaninemia 1 unknown 105246739 XR_878639 Gm41981 - - 1 G3|1 predicted gene, 41981 ncRNA 102640175 XR_389412 Gm36304 - - 5 E4|5 predicted gene, 36304 ncRNA 100418292 Gm14917 - - X|X E1 predicted gene 14917 pseudo 100418184 Gm19061 - - 14|14 A2 ATP-binding cassette, sub-family E (OABP), member 1 pseudogene pseudo 436243 Gm5764 EG436243 - X|X F4 ribosomal protein SA pseudogene pseudo 74100 Mm.297444 NM_028755 ENSMUSG00000032503 Arpp21 0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp - 9 F3|9 62.46 cM cyclic AMP-regulated phosphoprotein, 21 protein-coding 492940 Idd21 - - - insulin dependent diabetes susceptibility 21 unknown 668010 Gm12416 - - 4|4 C4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105243153 Gm39152 - - 8|8 predicted gene, 39152 ncRNA 111150 Odc-rs13 Odc-13 - - ornithine decarboxylase, related sequence 13 pseudo 258775 Mm.438896 NM_146779 ENSMUSG00000096695 Olfr196 MOR183-1 - 16|16 C1.3 olfactory receptor 196 protein-coding 100035509 Mfat6 - - - M-line adipose tissue, general adiposity 6 unknown 102632350 XR_865854 Gm30446 - - 1 H6|1 predicted gene, 30446 ncRNA 14246 Mm.162684 XM_017319842 Flg AW107830|ft - 3 F2.1|3 40.16 cM filaggrin protein-coding 102633861 XR_379478 Gm31586 - - 9 B|9 predicted gene, 31586 ncRNA 100048898 Mm.403824 Gm10751 - - - predicted gene 10751 protein-coding 101056097 Gm29778 - - 5 G3|5 predicted gene, 29778 pseudo 111718 Mpmv33 Mpmv-33 - - modified polytropic murine leukemia virus 33 other 215253 Gm13410 - - 2|2 A3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 pseudogene pseudo 404379 Olfr343-ps1 GA_x5J8B7W4QPD-3054974-3054685 - 2|2 B olfactory receptor 343, pseudogene 1 pseudo 11813 Mm.28394 NM_001277944 ENSMUSG00000002992 Apoc2 apo-CII|apoC-II - 7 A3|7 9.94 cM apolipoprotein C-II protein-coding 227693 Mm.44526 NM_178694 ENSMUSG00000039686 Zer1 C230075L19Rik|Zyg11bl - 2|2 B zyg-11 related, cell cycle regulator protein-coding 116538 Aaq2 - - 12 26.43 cM alcohol acceptance QTL 2, female specific unknown 96867 C77068 - - - expressed sequence C77068 protein-coding 545030 Mm.318345 NM_001146022 ENSMUSG00000051506 Wdfy4 Gm18810 - 14|14 B WD repeat and FYVE domain containing 4 protein-coding 13714 Mm.254233 NM_007923 ENSMUSG00000026436 Elk4 2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1 - 1|1 E4 ELK4, member of ETS oncogene family protein-coding 67458 Mm.30496 NM_026170 ENSMUSG00000001576 Ergic1 1200007D18Rik|maa-136 - 17|17 A3.3 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 protein-coding 170741 Mm.347593 NM_133209 ENSMUSG00000066684 Pilrb1 FDFACT|Fdact|Pilrb - 5|5 G2 paired immunoglobin-like type 2 receptor beta 1 protein-coding 493167 Tbdr1 - - 9 28.62 cM body temperature response to dietary restriction, QTL 1 unknown 102636757 XR_879269 Gm33739 - - 8 E1|8 predicted gene, 33739 ncRNA 320761 Mm.472340 D630008O14Rik D630044D05Rik - 1|1 RIKEN cDNA D630008O14 gene ncRNA 258398 Mm.271329 NM_146403 ENSMUSG00000108919 Olfr1295 MOR248-10 - 2|2 E3 olfactory receptor 1295 protein-coding 102633711 XR_385552 Gm15320 - - 17 B1|17 17.99 cM predicted gene 15320 ncRNA 319728 Mm.448221 E030042N06Rik - - 9|9 RIKEN cDNA E030042N06 gene protein-coding 102635512 XR_381231 Gm32828 - - 12 A1.1|12 predicted gene, 32828 ncRNA 105247063 Gm42238 - - 5|5 predicted gene, 42238 ncRNA 19302 Mm.132336 NM_008994 ENSMUSG00000040374 Pex2 D3Ertd138e|PAF-1|PMP35|Pxmp3 - 3 A1|3 1.96 cM peroxisomal biogenesis factor 2 protein-coding 668201 Gm9042 EG668201 - 19|19 C2 IK cytokine pseudogene pseudo 108168570 XM_017318773 LOC108168570 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 12481 Mm.22842 NM_013486 ENSMUSG00000027863 Cd2 LFA-2|Ly-37|Ly37 - 3 F2.2|3 44.17 cM CD2 antigen protein-coding 320991 C230031I18Rik - - 3|3 RIKEN cDNA C230031I18 gene protein-coding 18682 Mm.3159 NM_011079 ENSMUSG00000025537 Phkg1 Phkg - 5 G1.3|5 68.26 cM phosphorylase kinase gamma 1 protein-coding 17309 Mm.299693 NM_010795 ENSMUSG00000042428 Mgat3 1110038J12Rik|AI848272|GnT-III - 15 E1|15 37.85 cM mannoside acetylglucosaminyltransferase 3 protein-coding 102635087 Mm.444536 NR_110517 ENSMUSG00000111429 Gm32511 - - 9 D|9 predicted gene, 32511 ncRNA 19553 Rb(4.17)13Lub Rb13Lub - - Robertsonian translocation, Chr 4 and 17, Lubeck 13 other 229665 Mm.331272 NM_001033303 ENSMUSG00000070385 Ampd1 AI553520|Ampd-1 - 3 F2.2|3 45.25 cM adenosine monophosphate deaminase 1 protein-coding 100504268 Mm.410858 NR_040634 ENSMUSG00000087254 2310005A03Rik - - 2|2 H1 RIKEN cDNA 2310005A03 gene ncRNA 100093700 Mm.483778 NR_033555 ENSMUSG00000107456 Gm10400 - - 6 G2|6 predicted gene 10400 ncRNA 545985 Mm.485770 NM_001200027 ENSMUSG00000094119 Olfr612 EG545985|MOR15-3|Olfr612-ps1 - 7|7 E3 olfactory receptor 612 protein-coding 102633371 Mm.406638 XR_387009 Gm14902 - - X C3|X 43.72 cM predicted gene 14902 ncRNA 66929 Mm.29680 NM_024184 ENSMUSG00000005470 Asf1b 1700003K02Rik|AA409591 - 8|8 C2 anti-silencing function 1B histone chaperone protein-coding 56209 Mm.273142 NM_019580 ENSMUSG00000033917 Gde1 1200003M13Rik|Mir16|RGS16 - 7|7 F2 glycerophosphodiester phosphodiesterase 1 protein-coding 432448 Gm5422 EG432448 - 10|10 A4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 pseudogene pseudo 493149 Nidd5k - - 1 36.94 cM Nidd5 on KK-A unknown 100049547 NR_030529 ENSMUSG00000076450 Mir804 Mirn804|mmu-mir-804 - 11 B1.3|11 microRNA 804 ncRNA 12306 Mm.238343 NM_007585 ENSMUSG00000032231 Anxa2 AW215814|Cal1h - 9 C|9 38.58 cM annexin A2 protein-coding 213469 Mm.41708 NM_145219 ENSMUSG00000033595 Lgi3 AI841179|AW049851 - 14|14 D2 leucine-rich repeat LGI family, member 3 protein-coding 102233 AU022202 - - - expressed sequence AU022202 unknown 105243726 XR_878272 Gm39539 - - X F1|X predicted gene, 39539 ncRNA 230514 Mm.4756 NM_175036 ENSMUSG00000035212 Leprot LEPR|OB-RGRP|Obrgrp|VPS55 - 4|4 C6 leptin receptor overlapping transcript protein-coding 72283 1700029B24Rik Gm37384 - 3|3 RIKEN cDNA 1700029B24 gene protein-coding 62390 D16Mit28 - - 16 12.38 cM DNA segment, Chr 16, Massachusetts Institute of Technology 28 unknown 108017 Mm.250392 NM_033648 ENSMUSG00000004988 Fxyd4 0610008I02Rik|AI267073|Chif - 6|6 F1 FXYD domain-containing ion transport regulator 4 protein-coding 381741 Mm.297826 NM_001033461 ENSMUSG00000063409 Lrrc43 Gm1061 - 5|5 F leucine rich repeat containing 43 protein-coding 353234 Mm.308500 NM_198117 ENSMUSG00000104148 Pcdha2 - - 18|18 B2-B3 protocadherin alpha 2 protein-coding 69517 Mm.395343 NR_028122 ENSMUSG00000053353 2310001K24Rik - - 2|2 H3 RIKEN cDNA 2310001K24 gene ncRNA 108551 Iapls2-37 - - - intracisternal A particle, lymphocyte specific 2-37 other 102633768 XR_878539 Gm31515 - - 1 E4|1 predicted gene, 31515 ncRNA 231842 Mm.491298 NM_173405 ENSMUSG00000050022 Amz1 5330426I05|6530401C20Rik - 5|5 G2 archaelysin family metallopeptidase 1 protein-coding 228140 Mm.23606 NM_001081260 ENSMUSG00000033955 Tnks1bp1 Tab182|mKIAA1741 - 2|2 D tankyrase 1 binding protein 1 protein-coding 667987 Gm8913 EG667987 - 7|7 E3 MOB kinase activator 3C pseudogene pseudo 258583 Mm.377578 NM_146590 ENSMUSG00000075176 Olfr1085 MOR191-1 - 2|2 D olfactory receptor 1085 protein-coding 404519 Olfr1479-ps1 GA_x5J8B7W6KF8-5539992-5539494 - 19|19 A olfactory receptor 1479, pseudogene 1 pseudo 13710 Mm.441439 NM_007921 ENSMUSG00000003051 Elf3 ESE-1|ESX|jen - 1|1 E4 E74-like factor 3 protein-coding 71665 Mm.439940 NM_024243 ENSMUSG00000028673 Fuca1 0610006A03Rik|9530055J05Rik|Afuc|Fuca - 4 D3|4 68.01 cM fucosidase, alpha-L- 1, tissue protein-coding 100036419 Pbrgcsf2 - - - peripheral blood stem cell response to granulocyte colony stimulating factor 2 unknown 68245 Mm.443285 NR_015532 ENSMUSG00000100585 1700108J01Rik - - 14|14 E5 RIKEN cDNA 1700108J01 gene ncRNA 257972 Mm.390897 NM_001011791 ENSMUSG00000060057 Olfr193 MOR113-7P|MOR183-7P|Olfr1540-ps1 - 16|16 C1.3 olfactory receptor 193 protein-coding 56430 Mm.241109 NM_019765 ENSMUSG00000049550 Clip1 1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin - 5|5 F CAP-GLY domain containing linker protein 1 protein-coding 108167874 XM_017314879 LOC108167874 - - 11 E2 zinc finger protein 431-like protein-coding 492865 Eila2 - - 6 37.96 cM ethanol induced locomotor activity 2 unknown 436212 NM_001101541 Mageb8-ps EG436212|Gm5758|Mageb8|mMage-b8 - X|X C1 melanoma antigen, family B, 8, pseudogene pseudo 21158 T(3;10)61H T61H - - reciprocal translocation, Chr 3 and 10, Harwell 61 other 105243172 XR_870359 Gm39164 Gm45569 - 8 A4|8 predicted gene, 39164 ncRNA 327900 Mm.260956 NM_173784 ENSMUSG00000044949 Ubtd2 4930571L24|9630054F20Rik|AI645720 - 11|11 A4 ubiquitin domain containing 2 protein-coding 53674 D6Nds5 D4Nds1 - - DNA segment, Chr 6, Nuffield Department of Surgery 5 unknown 212032 Mm.267479 NM_001033245 ENSMUSG00000025877 Hk3 HK III|HK-III - 13|13 B1 hexokinase 3 protein-coding 100034880 Im5 LCH10 - 10 66.75 cM immunoregulatory 5 unknown 105247153 Mm.403200 Gm11267 - - 4|4 39.29 cM predicted gene 11267 ncRNA 61839 D2Mit294 - - 2 19.34 cM DNA segment, Chr 2, Massachusetts Institute of Technology 294 unknown 100039503 XM_006519756 Gm2274 - - 14 A3|14 predicted gene 2274 protein-coding 67791 Mm.158175 NR_027881 ENSMUSG00000097049 6530411M01Rik - - 17|17 A1 RIKEN cDNA 6530411M01 gene ncRNA 100036317 Cplaq9 - - 6 24.55 cM circadian period of locomotor activity 9 unknown 381569 Mm.332024 NM_001005371 ENSMUSG00000059218 Gm13084 - - 4 E1|4 predicted gene 13084 protein-coding 319156 Mm.260530 NM_175654 ENSMUSG00000061482 Hist1h4d - - 13|13 A3.1 histone cluster 1, H4d protein-coding 102634755 XR_878126 Gm32261 - - X A7.3|X predicted gene, 32261 ncRNA 100040633 Rpsa-ps10 Gm9819 - 3|3 H3 ribosomal protein SA, pseudogene 10 pseudo 320604 Mm.213909 NM_177203 ENSMUSG00000048655 Ccdc169 A730037C10Rik - 3|3 C coiled-coil domain containing 169 protein-coding 100043617 Mm.459197 XM_011242031 Gm4553 - - 7 F5|7 predicted gene 4553 protein-coding 105246932 XR_880474 Gm42126 - - 5 E4|5 predicted gene, 42126 ncRNA 359994 DXMgc125 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 1255 unknown 56078 Mm.180953 NM_181315 ENSMUSG00000031373 Car5b 7330410H16Rik|CAVB|Ca5b|CarVb|D730005F19Rik - X|X F5 carbonic anhydrase 5b, mitochondrial protein-coding 53084 42F4-T7 - - - DNA segment, 42F4-T7 unknown 107469 Nba1 - - - New Zealand Black autoimmunity 1 protein-coding 108168649 XM_017318860 LOC108168649 - - Y B Y-linked testis-specific protein 1-like protein-coding 77851 Mm.358632 D730044K07Rik - - 15|15 RIKEN cDNA D730044K07 gene protein-coding 108393 Pmv63 Pmv-63 - - polytropic murine leukemia virus 63 other 70567 Mm.30607 NM_001081075 ENSMUSG00000054237 Fra10ac1 5730455O13Rik|AI448293 - 19|19 C2 FRA10AC1 homolog (human) protein-coding 61411 D5Mit177 - - 5 54.42 cM DNA segment, Chr 5, Massachusetts Institute of Technology 177 unknown 102636357 LOC102636357 - - 5 C3.1 60S ribosomal protein L37 pseudogene pseudo 15574 Mm.42201 NM_008316 ENSMUSG00000020413 Hus1 - - 11 A1|11 5.74 cM HUS1 checkpoint clamp component protein-coding 102637810 XR_382932 Gm34528 - - 13 D2.2|13 predicted gene, 34528 ncRNA 75115 Mm.280755 NR_045735 ENSMUSG00000096986 4930509E16Rik - - 9|9 D RIKEN cDNA 4930509E16 gene ncRNA 117226 nma - - - neuromuscular ataxia unknown 668853 Gm15578 EG668853 - 3|3 H4 ribosomal protein L21 pseudogene pseudo 12992 Mm.153308 NM_009973 ENSMUSG00000061388 Csn1s2b AW987150|Csnd|Csne - 5 E1|5 43.56 cM casein alpha s2-like B protein-coding 111850 Iapls3-28 - - - intracisternal A particle, lymphocyte specific 3-28 other 17967 Mm.4974 NM_010875 ENSMUSG00000039542 Ncam1 CD56|E-NCAM|NCAM-1|Ncam - 9 A5.3|9 26.83 cM neural cell adhesion molecule 1 protein-coding 100417625 Gm18723 - - 16|16 C1.1 mitochondrial ribosomal protein L45 pseudogene pseudo 111733 Igk-V19 - - - immunoglobulin kappa chain variable 19 (V19) other 70612 Mm.30116 NM_027478 ENSMUSG00000027341 Tmem230 5730494N06Rik|AA407821 - 2|2 F2 transmembrane protein 230 protein-coding 111468 Gln3-8 - - - GLN retrotransposon family 3-8 other 102634656 XR_377660 Gm32190 - - 6 B3|6 predicted gene, 32190 ncRNA 408060 Mm.183391 BC049692 - - - cDNA sequence BC049692 protein-coding 102634760 Gm21751 - - Y|Y predicted gene, 21751 protein-coding 111424 Mtv35 Mtv-35 - - mammary tumor virus locus 35 other 102638680 XM_006502512 Gm35185 - - 3 F1|3 predicted gene, 35185 protein-coding 77475 Mm.404870 XR_001778520 C030037F17Rik - - 8|8 A1.1 RIKEN cDNA C030037F17 gene ncRNA 75744 Mm.386823 NM_001160345 ENSMUSG00000074093 Svip 1700006C13Rik|6620401M08Rik - 7|7 B4 small VCP/p97-interacting protein protein-coding 101056148 Gm29788 - - 6 F3|6 polypeptide N-acetylgalactosaminyltransferase 8 pseudogene pseudo 780958 Ighv1-65 - - 12|12 F2 immunoglobulin heavy variable V1-65 pseudo 62282 D19Mit46 - - 19 29.06 cM DNA segment, Chr 19, Massachusetts Institute of Technology 46 unknown 52815 Mm.27589 NM_027570 ENSMUSG00000031958 Ldhd 4733401P21Rik|D8Bwg1320e - 8 E1|8 57.98 cM lactate dehydrogenase D protein-coding 216544 Rpl12-ps2 Gm12032 - 11|11 A3.1 ribosomal proteimn L12-ps2 pseudo 61602 D9Mit264 - - 9 43.65 cM DNA segment, Chr 9, Massachusetts Institute of Technology 264 unknown 17855 Mm.28088 NM_023556 ENSMUSG00000041939 Mvk 2310010A05Rik|AI256848|AI414037|MK - 5 F|5 55.99 cM mevalonate kinase protein-coding 22163 Mm.13885 NM_011659 ENSMUSG00000029075 Tnfrsf4 ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1 - 4 E2|4 87.68 cM tumor necrosis factor receptor superfamily, member 4 protein-coding 666713 Gm8251 EG666713 - 1|1 C1.1 predicted gene 8251 protein-coding 57264 Mm.1181 NM_022984 ENSMUSG00000012705 Retn ADSF|Fizz3|Rstn|Xcp4 - 8 A1.1|8 1.92 cM resistin protein-coding 108168431 Gm46668 - - X A5|X multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 102465786 NR_106153 ENSMUSG00000098677 Mir7684 Gm27873|mmu-mir-7684 - 15|15 E1 microRNA 7684 ncRNA 102636826 XR_382921 Gm15322 - - 13 D2.2|13 63.73 cM predicted gene 15322 ncRNA 105242865 XR_880146 Gm38956 - - 11 D|11 predicted gene, 38956 ncRNA 246154 Mm.482140 NM_139307 ENSMUSG00000039646 Vasn 2610528G05Rik|Atia|Slitl2 - 16|16 A1 vasorin protein-coding 15201 Mm.57223 NM_008234 ENSMUSG00000025001 Hells AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8 - 19|19 C3 helicase, lymphoid specific protein-coding 78216 4930584D05Rik - - - RIKEN cDNA 4930584D05 gene protein-coding 242202 Mm.134911 NM_153422 ENSMUSG00000053965 Pde5a Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1 - 3|3 G1 phosphodiesterase 5A, cGMP-specific protein-coding 100862329 Mm.337329 NM_001270669 ENSMUSG00000099711 Btbd35f21 Gm21951|Mgclh - X A3.1|X BTB domain containing 35, family member 21 protein-coding 208987 Mm.450421 BC025031 - - 11|11 A1 cDNA sequence BC025031 protein-coding 78551 5430407F15Rik - - 7|7 RIKEN cDNA 5430407F15 gene protein-coding 111208 Dhfr-rs1 Dhfr-2 - - dihydrofolate reductase, related sequence 1 pseudo 493111 Bpq9 - - 16 45.89 cM blood pressure QTL 9 unknown 102634931 XR_381224 Gm32398 - - 12 A1.1|12 predicted gene, 32398 ncRNA 100038755 Mm.490992 Gm9917 - - - predicted gene 9917 unknown 100035711 Pbft2 - - - percent body fat 2 unknown 67759 Mm.275511 NM_026362 ENSMUSG00000016495 Plgrkt 1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT - 19|19 C1 plasminogen receptor, C-terminal lysine transmembrane protein protein-coding 100040266 Mm.415206 Gm2682 - - 15 D1|15 predicted gene 2682 protein-coding 18037 Mm.57043 NM_008690 ENSMUSG00000023947 Nfkbie I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon - 17|17 B3 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon protein-coding 320942 Mm.11535 A730061H03Rik - - 14|14 RIKEN cDNA A730061H03 gene protein-coding 107605 Mm.484271 NM_080436 ENSMUSG00000089789 Rdh1 - - 10 D3|10 75.21 cM retinol dehydrogenase 1 (all trans) protein-coding 630499 Mm.440940 NM_001081015 H2-K2 EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1 - 17 17.98 cM|17 B1 histocompatibility 2, K region locus 2 pseudo 109169 Mm.426423 NM_001267796 ENSMUSG00000110185 Igip 6330403M23Rik - 18|18 B2 IgA inducing protein protein-coding 665666 Gm7740 EG665666 - 17|17 A3.2 predicted gene 7740 ncRNA 777781 Ighv5-7 Gm10314 - 12|12 F1 immunoglobulin heavy variable V5-7 pseudo 13474 Dp(9)3H Dp3H - - duplication, Chr 9, Harwell 3 other 102635682 XR_375142 LOC102635682 - - 2 H1 uncharacterized LOC102635682 ncRNA 12861 Mm.43415 NM_007748 ENSMUSG00000041697 Cox6a1 VIaL - 5 F|5 56.06 cM cytochrome c oxidase subunit VIa polypeptide 1 protein-coding 434200 Gm5597 - - 7 D1|7 thymine DNA glycosylase pseudogene pseudo 108168868 XR_001783830 LOC108168868 - - 3 C uncharacterized LOC108168868 ncRNA 21843 Mm.242072 NM_009383 ENSMUSG00000030846 Tial1 5330433G13Rik|AL033329|TIAR|mTIAR - 7|7 F3 Tia1 cytotoxic granule-associated RNA binding protein-like 1 protein-coding 503688 Mm.424677 AY339874 - - - cDNA sequence AY339874 unknown 245865 Mm.330713 NM_139151 ENSMUSG00000038180 Spag4 1700041K21Rik|MNCb-0953|Sun4|mKIAA4118 - 2|2 H1 sperm associated antigen 4 protein-coding 625760 Gm11956 - - 11|11 A1 predicted gene 11956 pseudo 67512 Mm.24244 NM_026212 ENSMUSG00000026922 Agpat2 2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta - 2|2 A3 1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta) protein-coding 70251 2010105D22Rik - - 19|19 RIKEN cDNA 2010105D22 gene protein-coding 100035762 Aaom1 - - 4 10.32 cM autoimmune aoritis in MRL mice 1 unknown 21672 Mm.347009 NM_011563 ENSMUSG00000005161 Prdx2 AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin - 8 C3|8 41.4 cM peroxiredoxin 2 protein-coding 98051 C76309 - - - expressed sequence C76309 unknown 117149 Mm.23987 NM_054096 ENSMUSG00000032041 Tirap AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt - 9|9 A4 toll-interleukin 1 receptor (TIR) domain-containing adaptor protein protein-coding 27844 DXSmh141 DXOrl1|DXWas68 - - DNA segment, Chr X, St. Mary's Hospital 141 unknown 244202 Mm.37991 NM_175532 ENSMUSG00000049709 Nlrp10 6430548I20Rik|Nalp10|Napl10|PAN5|Pynod - 7|7 E3 NLR family, pyrin domain containing 10 protein-coding 105244348 XR_866918 Gm14221 - - 2 H2|2 80.95 cM predicted gene 14221 ncRNA 384929 Gm1947 - - X|X F4 predicted pseudogene 1947 protein-coding 414092 Mm.145224 A830008E24Rik - - - RIKEN cDNA A830008E24 gene unknown 77417 Mm.437510 NR_126552 ENSMUSG00000085078 C030013C21Rik - - 11|11 B5 RIKEN cDNA C030013C21 gene ncRNA 78688 Mm.475715 NM_030152 ENSMUSG00000014776 Nol3 ARC|B430311C09Rik|MYC|NOP|Nop30 - 8 D3|8 53.04 cM nucleolar protein 3 (apoptosis repressor with CARD domain) protein-coding 434218 Mm.485757 NM_001243916 ENSMUSG00000090215 Trim34b Gm15134|Trim34-2 - 7|7 E3 tripartite motif-containing 34B protein-coding 100503394 Mm.440058 Gm17494 EyeLinc2 - 3|3 52.94 cM predicted gene, 17494 ncRNA 76995 Mm.392425 XR_877619 1700095A13Rik - - 18|18 E3 RIKEN cDNA 1700095A13 gene unknown 102635339 LOC102635339 - - 6 C3 60S ribosomal protein L34 pseudogene pseudo 105244486 XR_867414 LOC105244486 - - 3 F1 uncharacterized LOC105244486 ncRNA 105244863 XR_869358 Gm40395 - - 6 E3|6 predicted gene, 40395 ncRNA 12097 Mm.425160 NM_001032298 ENSMUSG00000074486 Bglap2 BGP2|Bglap1|Bgp|Og2|mOC-B - 3 F1|3 38.81 cM bone gamma-carboxyglutamate protein 2 protein-coding 72723 Mm.371648 NM_178384 ENSMUSG00000059975 Zfp74 2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74 - 7 B1|7 17.26 cM zinc finger protein 74 protein-coding 383094 Gm5219 - - 15|15 A1 UDP glycosyltransferases 3 family, polypeptide A1 pseudogene pseudo 108167999 XR_001780605 Gm46349 - - 12 B1|12 predicted gene, 46349 ncRNA 100302595 Gm14780 - - X|X C3 valyl-tRNA synthetase pseudogene pseudo 71767 Mm.71514 NM_027912 ENSMUSG00000020087 Tysnd1 1300019N10Rik - 10|10 B4 trypsin domain containing 1 protein-coding 102634698 XR_878548 Gm32221 - - 1 E4|1 predicted gene, 32221 ncRNA 492926 Ssta2 - - 1 80.33 cM susceptibility to Salmonella typhimurium antigens 2 unknown 62140 D13Mit72 - - 13 53.81 cM DNA segment, Chr 13, Massachusetts Institute of Technology 72 unknown 75485 Mm.308031 NM_029308 ENSMUSG00000057047 1700010B08Rik - - 2|2 H4 RIKEN cDNA 1700010B08 gene protein-coding 107490 Tel5q - - - telomeric sequence, Chr 5, q arm protein-coding 319347 Mm.439105 C230094B09Rik - - 1|1 RIKEN cDNA C230094B09 gene protein-coding 14990 Mm.329041 NM_008204 ENSMUSG00000016283 H2-M2 H-2M2|Thy19.4 - 17 B1|17 19.16 cM histocompatibility 2, M region locus 2 protein-coding 75148 Mm.23505 NR_045357 ENSMUSG00000112157 4930545H06Rik - - 10|10 B5.2 RIKEN cDNA 4930545H06 gene ncRNA 320722 Mm.400254 NM_001145192 ENSMUSG00000091636 Akain1 A330050F15Rik - 17|17 E1.3 A kinase (PRKA) anchor inhibitor 1 protein-coding 71985 Mm.45423 NM_028037 ENSMUSG00000029456 Acad10 2410021P16Rik - 5|5 F acyl-Coenzyme A dehydrogenase family, member 10 protein-coding 17765 Mm.257149 NM_013827 ENSMUSG00000029267 Mtf2 9230112N11Rik|AA537621|C76717|M96|Pcl2 - 5|5 F metal response element binding transcription factor 2 protein-coding 105246151 Mm.449986 NR_155304 4930590A17Rik - - 16|16 C3.3 RIKEN cDNA 4930590A17 gene ncRNA 62725 D19Mit108 - - 19 56.28 cM DNA segment, Chr 19, Massachusetts Institute of Technology 108 unknown 102635427 XR_379614 Gm32769 - - 9 D|9 predicted gene, 32769 ncRNA 212514 Mm.24035 NM_144550 ENSMUSG00000043065 Spice1 Ccdc52|D16Ertd480e - 16 B4|16 28.67 cM spindle and centriole associated protein 1 protein-coding 380601 Mm.27090 NM_198176 ENSMUSG00000079043 Fastkd5 C78212|mKIAA1792 - 2|2 F1 FAST kinase domains 5 protein-coding 628144 Igkv9-123 EG628144|Gm6848 - 6|6 C1 immunoglobulin kappa variable 9-123 other 100216474 Mm.477432 NM_001098267 ENSMUSG00000079722 Ttll2 EG625850 - 17|17 A1 tubulin tyrosine ligase-like family, member 2 protein-coding 102638498 Gm15732 - - 5 B3|5 20.17 cM predicted gene 15732 pseudo 102632850 XR_865863 Gm30815 - - 1 H6|1 predicted gene, 30815 ncRNA 100043697 Mm.311948 Gm9959 - - 17 E3|17 predicted gene 9959 pseudo 100503491 Gm19724 - - 19|19 29.16 cM 39S ribosomal protein L33, mitochondrial-like pseudo 664975 Gm7432 EG664975 - 8 B3.1|8 ribosomal protein S2 pseudogene pseudo 634008 Gm7128 - - 8|8 A1.1 chromobox 1 pseudogene pseudo 225182 Mm.154275 NM_175458 ENSMUSG00000041238 Rbbp8 9930104E21Rik|CtIP|RBBP-8|RIM|SAE2 - 18|18 A1 retinoblastoma binding protein 8, endonuclease protein-coding 100885831 NR_049192 ENSMUSG00000093690 Mir5619 Gm23866|mir-5619|mmu-mir-5619 - 5|5 E5 microRNA 5619 ncRNA 105244369 XR_867016 Gm39992 - - 2 H3|2 predicted gene, 39992 ncRNA 105243975 XR_872346 Gm39675 - - 11 A4|11 predicted gene, 39675 ncRNA 108401 Srev14 Srev-14 - - SWR/J-RF/J ecotropic provirus 14 other 102634928 Gm32395 - - 19|19 predicted gene, 32395 pseudo 62032 D2Mit521 - - 2 18.29 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 521 unknown 102634488 Gm28583 - - 7|7 predicted gene 28583 pseudo 102640783 XR_379684 Gm36767 - - 9 E3.1|9 predicted gene, 36767 ncRNA 102633600 Mm.382916 NR_132432 ENSMUSG00000097441 Gm26633 - - 7 D2|7 predicted gene, 26633 ncRNA 50720 Mm.440703 NM_015788 ENSMUSG00000048279 Sacs A230052M14|DNAJC29|E130115J16Rik - 14 D1|14 32.13 cM sacsin protein-coding 102632834 Gm30803 - - 1|1 predicted gene, 30803 ncRNA 74153 Mm.277125 NM_023738 ENSMUSG00000032596 Uba7 1300004C08Rik|Ube1l - 9 F1|9 59.07 cM ubiquitin-like modifier activating enzyme 7 protein-coding 105244973 XR_872891 Gm40491 - - 12 D2|12 predicted gene, 40491 ncRNA 14113 Mm.4595 NM_007991 ENSMUSG00000046865 Fbl AL022665|FIB|FLRN|RNU3IP1 - 7|7 A3 fibrillarin protein-coding 100417499 Gm18649 - - 17|17 E3 ubiquitin-conjugating enzyme E2C pseudogene pseudo 102639949 XR_377275 Gm36141 - - 5 G3|5 predicted gene, 36141 ncRNA 102060 Mm.489649 NM_183358 ENSMUSG00000033751 Gadd45gip1 2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1 - 8|8 C2 growth arrest and DNA-damage-inducible, gamma interacting protein 1 protein-coding 257846 Olfr1345-ps1 EG257846|GA_x5J8B7W3DQU-679632-679375|Gm5031 - 7 A1|7 olfactory receptor 1345, pseudogene 1 pseudo 258092 Olfr337-ps1 MOR136-16P - 2|2 B olfactory receptor 337, pseudogene 1 pseudo 329918 Mm.246783 NM_177864 ENSMUSG00000049972 Skint9 A030013N09Rik|Skint-9 - 4|4 D1 selection and upkeep of intraepithelial T cells 9 protein-coding 102637400 Mm.186698 XM_017315294 Gm34220 Linc-YY1 - 12 F1|12 predicted gene, 34220 protein-coding 53724 D9H3S93 D3S93h - - DNA segment, Chr 9, human D3S93 unknown 66681 Mm.2325 NM_025700 ENSMUSG00000029171 Pgm1 3230402E02Rik|Pgm-1|Pgm2 - 5 C3.1|5 32.8 cM phosphoglucomutase 1 protein-coding 62751 D17Mit200 - - 17 22.88 cM DNA segment, Chr 17, Massachusetts Institute of Technology 200 unknown 65949 DXCch2 - - - DNA segment, Chr X, Celltech Chiroscience 2 unknown 13623 Edv - - - endogenous sequence related to the Duplan murine retrovirus other 109456 Exq3 - - - exploratory and excitability QTL 3 unknown 102632718 XR_377644 Gm30714 - - 6 B2.3|6 predicted gene, 30714 ncRNA 56041 Mm.15868 NM_019490 ENSMUSG00000029407 Uso1 115kDa|TAP|Vdp - 5|5 E2 USO1 vesicle docking factor protein-coding 105244470 XR_867363 Gm40072 - - 3 E3|3 predicted gene, 40072 ncRNA 100042423 Gm3836 - - 7|7 A1 metadherin pseudogene pseudo 71918 Mm.41904 NM_001101433 ENSMUSG00000055538 Zcchc24 2310047A01Rik - 14|14 A3 zinc finger, CCHC domain containing 24 protein-coding 100417921 Gm18898 - - 12|12 C1 predicted gene, 18898 pseudo 100423045 Gm10772 - - 13|13 predicted gene 10772 protein-coding 105242455 Gm38716 - - 17|17 predicted gene, 38716 pseudo 102633631 Gm31414 - - 2 F1|2 predicted gene, 31414 pseudo 545704 Gm13244 - - 4|4 E1 predicted gene 13244 pseudo 382156 Mm.373875 NM_001014395 ENSMUSG00000070324 Fbxw22 EG382156|Gm5164 - 9|9 F2 F-box and WD-40 domain protein 22 protein-coding 100416042 Gm13689 - - 2|2 C3 N-glycanase 1 pseudogene pseudo 18153 Mm.391580 Npn2 HT/02 - - neoplastic progression 2 protein-coding 320273 Mm.417706 NR_038027 ENSMUSG00000097378 B230208H11Rik - - 10|10 A2 RIKEN cDNA B230208H11 gene ncRNA 29827 Del(X)19Brd - - - deletion, Chr X, Bradley 19 other 105244799 XR_868594 Gm40346 - - 5 G2|5 predicted gene, 40346 ncRNA 27629 D11Moh2 - - - DNA segment, Chr 11, KL Mohlke 2 unknown 16688 Mm.441891 NM_010669 ENSMUSG00000023041 Krt6b BB144589|Krt2-6b|mK6[b] - 15 F2|15 56.97 cM keratin 6B protein-coding 102466774 NR_105927 ENSMUSG00000106563 Mir6962 mmu-mir-6962 - 15|15 F1 microRNA 6962 ncRNA 111264 Snrp1a-rs5 - - - U1 small nuclear ribonucleoprotein 1A, related sequence 5 pseudo 100048452 LOC100048452 - - 9|9 uncharacterized LOC100048452 protein-coding 105245159 XR_871652 Gm40651 - - 10 B3|10 predicted gene, 40651 ncRNA 18386 Mm.5243 NM_013622 ENSMUSG00000050511 Oprd1 DOR|DOR-1|Nbor|mDOR - 4 D2.3|4 64.78 cM opioid receptor, delta 1 protein-coding 114776 Actd1 - - 1 49.26 cM activity-distance traveled 1 unknown 239393 Mm.39874 NM_172814 ENSMUSG00000022305 Lrp12 AI848829|C820005L12Rik|LRP-12 - 15|15 B3.1 low density lipoprotein-related protein 12 protein-coding 110147 Mm.35345 NM_145830 ENSMUSG00000013787 Ehmt2 Bat8|D17Ertd710e|G9a|KMT1C|NG36 - 17 B1|17 18.45 cM euchromatic histone lysine N-methyltransferase 2 protein-coding 102238519 Gm29815 - - 5 G3|5 polymerase (RNA) II (DNA directed) polypeptide K pseudogene pseudo 320558 Mm.70781 NM_177191 ENSMUSG00000060445 Sycp2 3830402K23Rik|4930518F03Rik - 2|2 H4 synaptonemal complex protein 2 protein-coding 11444 Mm.35088 NM_009602 ENSMUSG00000027950 Chrnb2 Acrb-2|Acrb2|C030030P04Rik|[b]2-nAchR - 3 F1|3 39.19 cM cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal) protein-coding 66825 Mm.252312 NM_025786 ENSMUSG00000070661 Rnf186 9130020G10Rik - 4|4 D3 ring finger protein 186 protein-coding 69349 Mm.358922 NM_027049 ENSMUSG00000008028 1700008O03Rik - - 7|7 B3 RIKEN cDNA 1700008O03 gene protein-coding 102637725 Gm34463 - - 3|3 predicted gene, 34463 ncRNA 100417153 Gm18426 - - 3|3 A2 crumbs homolog 1 pseudogene pseudo 545289 Gm5827 EG545289 - 19|19 C3 nuclear receptor subfamily 1, group D, member 2 pseudogene pseudo 11435 Mm.4583 NM_007389 ENSMUSG00000027107 Chrna1 AI385656|AI608266|Achr-1|Acra - 2 C3|2 43.76 cM cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle) protein-coding 621612 Gm12960 - - 4|4 D1 predicted gene 12960 pseudo 67703 Mm.220710 NM_026324 ENSMUSG00000032036 Kirrel3 1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867 - 9|9 A4 kirre like nephrin family adhesion molecule 3 protein-coding 68028 Mm.21724 NM_026517 ENSMUSG00000039221 Rpl22l1 3110001N18Rik|AU041196 - 3|3 A3 ribosomal protein L22 like 1 protein-coding 100416075 Gm17906 - - 5|5 C3.3 nucleophosmin 1 pseudogene pseudo 100642183 Mm.451000 Gm13662 - - 2 42.79 cM predicted gene 13662 ncRNA 111610 Xmv31 Xmv-31 - - xenotropic murine leukemia virus 31 other 194952 Mm.295954 NM_178659 ENSMUSG00000036819 Jmjd4 6430559I23 - 11|11 B1.3 jumonji domain containing 4 protein-coding 100041380 Gm3302 - - 5 E3|5 predicted gene 3302 pseudo 58547 D13Die46 - - - DNA segment, Chr 13, Dietrich 46 unknown 626912 Gm6719 EG626912 - 6|6 A3.1 PCNA-associated factor pseudogene pseudo 100038658 9830004L10Rik - - - RIKEN cDNA 9830004L10 gene protein-coding 102639321 Gm38518 - - 4|4 predicted gene, 38518 ncRNA 381783 Mm.423821 Igkv5-43 Igk-V23|Igkv5-45 - 6 C1|6 31.63 cM immunoglobulin kappa chain variable 5-43 other 105244836 XR_869062 Gm40372 - - 6 B2.3|6 predicted gene, 40372 ncRNA 100035702 Ity4 - - - immunity to S. typhimurium 4 unknown 78176 Mm.108055 NR_046192 ENSMUSG00000091686 4930471C04Rik - - 14|14 D1 RIKEN cDNA 4930471C04 gene ncRNA 114745 Scpro2 Scp2 - - stem cell proliferation 2 unknown 211223 Mm.469881 NM_001104626 ENSMUSG00000091375 Vmn2r15 EG211223 - 5|5 F vomeronasal 2, receptor 15 protein-coding 780801 Ighv14-1 Gm16996 - 12|12 F1 immunoglobulin heavy variable 14-1 other 102634578 XR_378144 Gm32124 - - 6 G3|6 predicted gene, 32124 ncRNA 74929 4930487N04Rik - - - RIKEN cDNA 4930487N04 gene protein-coding 51985 D3Ggc2e - - - DNA segment, Chr 3, G. Consalez 2, expressed unknown 111801 Iapls3-41 - - - intracisternal A particle, lymphocyte specific 3-41 other 105243426 XR_870830 Gm39352 - - 9 B|9 predicted gene, 39352 ncRNA 668171 Mm.426134 NR_003292 Zxda 4933406P09Rik|AW413531 - X|X C3 zinc finger, X-linked, duplicated A pseudo 110774 Igl-C5 - - - immunoglobulin lambda chain, constant region 5 other 67972 Mm.166944 NM_026482 ENSMUSG00000019943 Atp2b1 2810442I22Rik|E130111D10Rik|Pmca1 - 10|10 C3 ATPase, Ca++ transporting, plasma membrane 1 protein-coding 382600 Gm5183 EG382600 - 12|12 C1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100416180 Gm17959 - - 2|2 H1 ribosomal protein L8 pseudogene pseudo 666531 Gm13456 - - 2|2 B eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 209354 Mm.28839 NM_145371 ENSMUSG00000029388 Eif2b1 D5Ertd406e|EIF2BA - 5 F|5 63.67 cM eukaryotic translation initiation factor 2B, subunit 1 (alpha) protein-coding 66510 Mm.170023 NM_025607 ENSMUSG00000055850 Rnf181 1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350 - 6|6 C1 ring finger protein 181 protein-coding 26611 Mm.1782 NM_011992 ENSMUSG00000032320 Rcn2 AA408742|Tcbp49 - 9|9 B reticulocalbin 2 protein-coding 53706 D12Nyu3 D12-3 - - DNA segment, Chr 12, NYU 3 unknown 61171 D16Mit55 - - - DNA segment, Chr 16, Massachusetts Institute of Technology 55 unknown 100040974 LOC100040974 - - - sp110 nuclear body protein-like pseudo 54324 Mm.320978 NM_133674 ENSMUSG00000033542 Arhgef5 2210412D05Rik|AA717842|AW495314|Tim1 - 6|6 B2.1 Rho guanine nucleotide exchange factor (GEF) 5 protein-coding 666589 Mm.367675 NR_046039 Gm8179 EG666589 - 8|8 A3 predicted gene 8179 ncRNA 30005 D10Jhu16 - - - DNA segment, Chr 10, Johns Hopkins University 16 unknown 108168461 Gm46681 - - X A3.3|X predicted gene, 46681 pseudo 233765 Mm.3741 NM_172743 ENSMUSG00000045659 Plekha7 A430081P20Rik|AI414265 - 7|7 F1 pleckstrin homology domain containing, family A member 7 protein-coding 668126 Gm8987 EG668126 - 18|18 E2 predicted gene 8987 pseudo 109279987 LOC109279987 Mm718 - - VISTA enhancer mm718 biological-region 69501 Mm.63828 NM_175147 ENSMUSG00000060967 Etd 1700030K02Rik - X|X A5 embryonic testis differentiation protein-coding 111352 Mmv18 Mmv-18 - - MCF endogenous virus 18 other 330433 9630009C16 - - 6|6 G1 uncharacterized protein 9630009C16 protein-coding 100503624 Gm19801 - - 10|10 A4 nucleoporin 88 pseudogene pseudo 16418 Mm.271674 NM_010579 ENSMUSG00000027613 Eif6 1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP - 2|2 H1 eukaryotic translation initiation factor 6 protein-coding 666513 XM_017320471 Gm11787 - - 4|4 A1 predicted gene 11787 protein-coding 102641007 LOC102641007 - - - H-2 class I histocompatibility antigen, Q10 alpha chain-like pseudo 102640942 Mm.135468 Gm36888 - - 3|3 predicted gene, 36888 ncRNA 19824 Mm.299155 NM_011280 ENSMUSG00000073400 Trim10 AI324236|BB139825|Herf1|Rnf9 - 17|17 B1 tripartite motif-containing 10 protein-coding 329547 Mm.260883 NM_177850 ENSMUSG00000052922 Bpi 9230105K17Rik|Bpifd1 - 2|2 H1 bactericidal permeablility increasing protein protein-coding 77884 Mm.441798 6720427H10Rik - - 13|13 RIKEN cDNA 6720427H10 gene protein-coding 60772 D2Mit92 - - 2 42.74 cM DNA segment, Chr 2, Massachusetts Institute of Technology 92 unknown 100038708 Mm.484441 XR_140488 ENSMUSG00000075538 Gm10855 - - 2 A1|2 predicted gene 10855 ncRNA 102634197 XR_874415 Gm31838 - - 14 A3|14 predicted gene, 31838 ncRNA 70652 Mm.46635 NM_027495 ENSMUSG00000027956 Tmem144 1110057I03Rik|5730537D05Rik - 3|3 E3 transmembrane protein 144 protein-coding 52325 Mm.155687 D7Ertd413e - - 7 B3|7 30.67 cM DNA segment, Chr 7, ERATO Doi 413, expressed unknown 18939 Pnlf1 - - - prenatal lethal function 1 unknown 19089 Mm.214593 NM_008925 ENSMUSG00000003402 Prkcsh 80K-H|PKCSH - 9 A3|9 8.04 cM protein kinase C substrate 80K-H protein-coding 27942 D7Nds1 - - 7 43.46 cM DNA segment, Chr 7, Nuffield Department of Surgery 1 unknown 108167640 XR_001779096 Gm46104 - - 9 A3|9 predicted gene, 46104 ncRNA 100502971 Gm19479 - - 13|13 34.5 cM zinc finger protein 41-like pseudo 102636708 Gm33705 - - 19|19 predicted gene, 33705 ncRNA 100462958 Gm19253 - - 6 B2.3|6 23.82 cM mitochondrial ribosomal protein S36 pseudogene pseudo 112216 Daq12 - - 15 16.74 cM directional asymmetry QTL 12 unknown 677525 XM_017318893 LOC677525 - - 1|1 sp110 nuclear body protein-like protein-coding 56626 Mm.46509 NM_020032 ENSMUSG00000025218 Poll 1110003P06Rik|AV007317 - 19|19 C3 polymerase (DNA directed), lambda protein-coding 382051 Mm.290750 NM_001024606 ENSMUSG00000048371 Pdp2 4833426J09Rik|Gm1705|mKIAA1348 - 8|8 D3 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 433241 Gm5519 EG433241 - 19|19 C1 nudix (nucleoside diphosphate linked moiety X)-type motif 15 pseudogene pseudo 102634566 Gm32114 - - Y|Y predicted gene, 32114 ncRNA 77171 NR_131069 ENSMUSG00000110507 8030455M16Rik Gm45794 - 8|8 D3 RIKEN cDNA 8030455M16 gene ncRNA 241073 Mm.297680 NM_001081658 ENSMUSG00000069085 Dytn Gm215 - 1|1 C2 dystrotelin protein-coding 21231 T(6;12)32H T32H - - reciprocal translocation, Chr 6 and 12, Harwell 32 other 83397 Mm.27481 NM_031185 ENSMUSG00000038587 Akap12 AI317366|SSeCKS|Srcs5|Tsga12 - 10|10 A1 A kinase (PRKA) anchor protein (gravin) 12 protein-coding 111116 Mm.177194 Akt2-ps - - 11 A2|11 9.41 cM thymoma viral proto-oncogene 2, pseudogene pseudo 52658 D10Ertd638e - - - DNA segment, Chr 10, ERATO Doi 638, expressed unknown 102634734 XR_377661 Gm32246 - - 6 B3|6 predicted gene, 32246 ncRNA 654812 Mm.388929 NM_001039554 ENSMUSG00000028989 Angptl7 - - 4|4 E2 angiopoietin-like 7 protein-coding 102466803 NR_106054 ENSMUSG00000098361 Mir7086 Gm27643|mmu-mir-7086 - 9|9 A5.2 microRNA 7086 ncRNA 224170 Mm.275138 NM_027341 ENSMUSG00000064061 Dzip3 2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20 - 16|16 B5 DAZ interacting protein 3, zinc finger protein-coding 100416867 Gm18296 - - 3|3 F2.1 mortality factor 4 like 2 pseudogene pseudo 11878 Mm.275547 NM_007492 ENSMUSG00000035277 Arx Arx1 - X C3|X 41.05 cM aristaless related homeobox protein-coding 101055911 Gm29742 - - 15 A1|15 predicted gene, 29742 pseudo 676568 Gm9683 - - 3|3 C predicted gene 9683 pseudo 102638236 XR_382938 Gm34845 - - 13 D2.2|13 predicted gene, 34845 ncRNA 111331 Atp5k-ps3 Atp5k-rs4 - 11 C|11 ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 3 pseudo 246177 Mm.239554 NM_178440 ENSMUSG00000020437 Myo1g E430002D17Rik - 11|11 A1 myosin IG protein-coding 102632073 Gm30243 - - 1|1 predicted gene, 30243 ncRNA 102465597 NR_105954 ENSMUSG00000098928 Mir6988 Gm27593|mmu-mir-6988 - 19|19 A microRNA 6988 ncRNA 258512 Mm.377545 NM_146519 ENSMUSG00000060974 Olfr530 MOR252-2 - 7|7 F4 olfactory receptor 530 protein-coding 100502917 Mm.61144 NR_040295 Gm12130 - - 11 A5|11 23.64 cM predicted gene 12130 ncRNA 102465885 NR_106168 ENSMUSG00000098972 Mir8093 Gm27548|mmu-mir-8093 - 2|2 B microRNA 8093 ncRNA 673215 Gm9591 - - 7|7 A1 serine peptidase inhibitor, clade B, member 3A pseudogene pseudo 100418006 Gm12782 - - 7|7 B1 glycoprotein galactosyltransferase alpha 1, 3 pseudogene pseudo 100503419 Gm19683 - - 7|7 A1 Ewing sarcoma breakpoint region 1 pseudogene pseudo 77531 Mm.440605 NM_181398 ENSMUSG00000058589 Anks1b AIDA-1|AIDA-1b|C030032C09Rik|E530015N03Rik|EB-1|Gm10937|Gm1555 - 10|10 C2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 17547 Ms10m MMS10-M - - minisatellite 10m detected by probe MMS10 other 18830 Mm.6105 NM_011125 ENSMUSG00000017754 Pltp Bpife|OD107 - 2 H3|2 85.27 cM phospholipid transfer protein protein-coding 110944 Kcna1-rs3 - - - potassium voltage-gated channel, shaker-related subfamily, member 1, related sequence 3 protein-coding 21948 Mm.42228 NM_011617 ENSMUSG00000019489 Cd70 CD27LG|Cd27l|Tnfsf7|Tnlg8a - 17 D|17 29.69 cM CD70 antigen protein-coding 105243964 Mm.468567 XR_865578 C430014B12Rik - - 1|1 C5 RIKEN cDNA C430014B12 gene ncRNA 100036409 Bmd34 Bmd27 - - bone mineral density 34 unknown 17312 Mm.252405 NM_010796 ENSMUSG00000000318 Clec10a CD301a|M-ASGP-BP-1|Mgl|Mgl1 - 11 B3|11 42.99 cM C-type lectin domain family 10, member A protein-coding 434721 Gm14332 - - X|X A1.1 spindlin family, member 2 pseudogene pseudo 105827746 Mm.388009 NR_132097 ENSMUSG00000086588 Gm11729 - - 11 E2|11 82.96 cM predicted gene 11729 ncRNA 94092 Mm.117087 NM_053169 ENSMUSG00000047821 Trim16 9130006M08Rik|AI482483|EBBP - 11|11 B2 tripartite motif-containing 16 protein-coding 100035430 Brwt3 - - - brain weight 3 unknown 71811 Mm.441673 2610027H17Rik - - - RIKEN cDNA 2610027H17 gene protein-coding 100039014 XM_017318723 Gm20793 - - Y|Y B predicted gene, 20793 protein-coding 61565 DXMit113a DXMit113 - X 41.67 cM DNA segment, Chr X, Massachusetts Institute of Technology 113a unknown 22335 Mm.227704 NM_011696 ENSMUSG00000008892 Vdac3 - - 8 A2|8 11.42 cM voltage-dependent anion channel 3 protein-coding 404284 Mm.377928 NM_207543 ENSMUSG00000074401 Vmn1r59 V1rd10 - 7|7 A1 vomeronasal 1 receptor 59 protein-coding 101883 Mm.333757 NM_145580 ENSMUSG00000036826 Igflr1 F630003I17Rik|Tmem149 - 7|7 B1 IGF-like family receptor 1 protein-coding 240069 Mm.157765 NM_177719 ENSMUSG00000048602 Morc2b 4932411A10Rik|Tce6 - 17|17 B1 microrchidia 2B protein-coding 109279883 LOC109279883 Mm15 - - VISTA enhancer mm15 biological-region 668646 Gm9283 EG668646 - 12 A1.3|12 hippocalcin-like 1 pseudogene pseudo 102634981 Gm32430 - - 5|5 predicted gene, 32430 protein-coding 171544 Huc1 - - - H19 upstream conserved region 1 biological-region 385495 Gm5400 EG385495 - X|X C3 predicted gene 5400 pseudo 258731 Mm.223164 NM_146736 ENSMUSG00000094612 Olfr491 MOR204-11 - 7|7 E3 olfactory receptor 491 protein-coding 70320 Mm.101096 2610008G14Rik C81120 - - RIKEN cDNA 2610008G14 gene protein-coding 12167 Mm.39089 NM_007560 ENSMUSG00000052430 Bmpr1b AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6 - 3|3 H1 bone morphogenetic protein receptor, type 1B protein-coding 102631600 XR_388186 Gm29897 - - 8 E2|8 predicted gene, 29897 ncRNA 61898 D2Mit433 - - 2 31.66 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 433 unknown 17984 Mm.400253 NM_010882 ENSMUSG00000033585 Ndn AI528698|Peg6 - 7 34.36 cM|7 C necdin protein-coding 111240472 LOC111240472 - - - Adh1 promoter region biological-region 102631950 XR_376714 Gm30151 - - 5 A1|5 predicted gene, 30151 ncRNA 105243053 XR_869938 4930456A14Rik - - 7|7 F3 RIKEN cDNA 4930456A14 gene ncRNA 100416097 Gm15193 - - X|X F4 abl-interactor 1 pseudogene pseudo 61164 D14Mit11 - - 14 6.33 cM DNA segment, Chr 14, Massachusetts Institute of Technology 11 unknown 108169086 XR_001785034 Gm42529 - - 5 G3|5 predicted gene 42529 ncRNA 228846 Mm.187574 NM_177657 ENSMUSG00000037813 D630003M21Rik - - 2|2 H1 RIKEN cDNA D630003M21 gene protein-coding 171037 Chab4 - - - cholesterol absorption 4 unknown 621542 Gm6238 EG621542 - X|X D predicted pseudogene 6238 pseudo 110958 Mm.100652 NM_033079 ENSMUSG00000030041 M1ap D6Mm5e - 6 C3|6 35.94 cM meiosis 1 associated protein protein-coding 75380 4930597E08Rik - - 17|17 RIKEN cDNA 4930597E08 gene protein-coding 382571 Mm.40173 NM_201531 ENSMUSG00000051726 Kcnf1 Gm1182|Kv5.1 - 12|12 A1.1 potassium voltage-gated channel, subfamily F, member 1 protein-coding 111935 Iap5ra11 - - - intracisternal A-type particle, U5 region, SINE repeat a-11 other 674122 Gm16410 EG630216 - X|X E3 STAT3-interacting protein as a repressor pseudogene pseudo 100418303 Gm19130 - - 4|4 A1 NIMA (never in mitosis gene a)-related expressed kinase 2 pseudogene pseudo 69654 Mm.167537 NM_027151 ENSMUSG00000025410 Dctn2 2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50 - 10 D3|10 74.5 cM dynactin 2 protein-coding 26374 Mm.328135 NM_011931 ENSMUSG00000040782 Cop1 AI316802|C80879|Rfwd2 - 1|1 H1 COP1, E3 ubiquitin ligase protein-coding 100124570 Vmn2r-ps85 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 85 pseudo 101101691 Mm.491065 Hm629797 Mrhl - - cDNA sequence HM629797 protein-coding 102637952 Mm.421393 NR_136889 Gm34637 - - 12 A1.1|12 predicted gene, 34637 ncRNA 228356 Mm.386861 NM_175123 ENSMUSG00000040591 1110051M20Rik AI586322 - 2|2 E1 RIKEN cDNA 1110051M20 gene protein-coding 435205 Taar7c-ps Taar7c - 10|10 A4 trace amine-associated receptor 7C, pseudogene pseudo 100039419 Gm2223 - - X A3.1|X predicted pseudogene 2223 pseudo 100418452 Gm19220 - - 12|12 B1 N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10 pseudogene pseudo 67399 Mm.275648 NM_026131 ENSMUSG00000021493 Pdlim7 LMP - 13|13 B1 PDZ and LIM domain 7 protein-coding 112043 Kwq3 - - - kidney weight QTL 3 unknown 105244089 Gm39763 - - 2|2 predicted gene, 39763 ncRNA 723819 NR_029821 ENSMUSG00000065483 Mir181c Mirn181c|mir-181c - 8|8 C2 microRNA 181c ncRNA 224640 Mm.29689 NM_146075 ENSMUSG00000044857 Lemd2 BC026588|Lem2|NET25 - 17|17 A3.3 LEM domain containing 2 protein-coding 546876 LOC546876 - - 5|5 E3 PRAME family member 8-like pseudo 105245471 XR_873261 Gm40920 - - 13 A3.3|13 predicted gene, 40920 ncRNA 104042 Trp2 Trp-2 - - tRNA proline 2 tRNA 101154638 Gm5121 EG330948 - 9 B|9 30.96 cM 40S ribosomal protein S8 pseudogene pseudo 15473 Mm.491154 NM_008287 ENSMUSG00000022323 Rida HR12|HRP12|Hrsp12 - 15|15 B3.1 reactive intermediate imine deaminase A homolog protein-coding 83486 Mm.259197 NM_148930 ENSMUSG00000032580 Rbm5 D030069N10Rik - 9|9 F1 RNA binding motif protein 5 protein-coding 330267 Mm.11989 NM_001164805 ENSMUSG00000032625 Thsd7a Gm837 - 6|6 A1 thrombospondin, type I, domain containing 7A protein-coding 11821 Mm.1786 NM_009698 ENSMUSG00000006589 Aprt C85684 - 8 E1|8 71.91 cM adenine phosphoribosyl transferase protein-coding 623046 Mm.189552 NM_001163271 ENSMUSG00000043060 Fscb EG623046 - 12|12 C1 fibrous sheath CABYR binding protein protein-coding 225372 Mm.89673 NM_146085 ENSMUSG00000006050 Apbb3 Fe65l2|Rirl2|TR2S - 18|18 B2 amyloid beta (A4) precursor protein-binding, family B, member 3 protein-coding 100144396 Mm.272067 Nct2 - - - non-coding in testis 2 ncRNA 102640574 XR_382333 Gm36606 - - 13 A5|13 predicted gene, 36606 ncRNA 626259 Rps6-ps1 Gm10137 - 15|15 D3 ribosomal protein S6, pseudogene 1 pseudo 111740 Mpmv17 Mpmv-17 - - modified polytropic murine leukemia virus 17 other 108168917 LOC108168917 - - 3 E3 40S ribosomal protein S8 pseudogene pseudo 24127 Mm.291179 NM_011916 ENSMUSG00000032410 Xrn1 Dhm2|exo|mXrn1 - 9|9 E3.3 5'-3' exoribonuclease 1 protein-coding 100034941 Gluchos3 - - - glucose homeostasis QTL 3 unknown 102640488 Mm.415515 NR_151528 ENSMUSG00000104021 Gm36536 - - 1 H4|1 predicted gene, 36536 ncRNA 258798 Mm.377696 NM_146802 ENSMUSG00000049334 Olfr902 MOR169-1 - 9|9 A5.1 olfactory receptor 902 protein-coding 633279 Gm12876 - - 4|4 D2.2 predicted gene 12876 protein-coding 102637280 XR_380561 Gm34137 - - 10 B5.3|10 predicted gene, 34137 ncRNA 102631528 XR_387628 Gm29843 - - 5 F|5 predicted gene, 29843 ncRNA 231279 Mm.21105 NM_172711 ENSMUSG00000029208 Guf1 4631409J12|AA407526|EF-4 - 5|5 C3.1 GUF1 homolog, GTPase protein-coding 112271 Pbwg6 C10bw5 - 13 53.23 cM postnatal body weight growth 6 unknown 194615 Gm4746 EG194615 - X|X C1 predicted gene 4746 pseudo 20779 Mm.22845 NM_009271 ENSMUSG00000027646 Src AW259666|pp60c-src - 2 H1|2 78.35 cM Rous sarcoma oncogene protein-coding 385454 Gm5396 EG385454 - X|X F3 predicted pseudogene 5396 pseudo 100036440 Rthyd2 - - - resistance to thymic deletion 2 unknown 102637875 Gm34575 - - 19|19 predicted gene, 34575 ncRNA 109745 Lsr1 Lr-1|Lsr-1 - - listeria resistance protein-coding 546335 Mm.476683 NM_001085534 ENSMUSG00000079521 Gm5938 EG546335|OBP6 - X|X B predicted gene 5938 protein-coding 102636327 Gm33426 - - 13|13 predicted gene, 33426 pseudo 404468 Olfr1072-ps1 GA_x6K02T2Q125-47967377-47966425 - 2|2 olfactory receptor 1072, pseudogene 1 pseudo 100504497 Mm.358802 Gm16233 - - 3|3 69.22 cM predicted gene 16233 ncRNA 102634402 XR_375007 Gm31993 - - 2 F3|2 predicted gene, 31993 ncRNA 84113 Mm.42855 NM_133949 ENSMUSG00000038502 Ptov1 1110030G05Rik|AU041779|Gcap3 - 7 B3|7 prostate tumor over expressed gene 1 protein-coding 100042347 Gm3800 - - 13 B3|13 ribosomal protein L17 pseudogene pseudo 78566 9530085P06Rik - - 8|8 RIKEN cDNA 9530085P06 gene protein-coding 13389 Mm.12896 NM_007866 ENSMUSG00000003436 Dll3 pu|pudgy - 7 A3|7 16.67 cM delta like canonical Notch ligand 3 protein-coding 93747 Mm.24452 NM_053119 ENSMUSG00000025465 Echs1 C80529 - 7|7 F4 enoyl Coenzyme A hydratase, short chain, 1, mitochondrial protein-coding 100124546 Vmn2r-ps3 - - 3|3 E1 vomeronasal 2, receptor, pseudogene 3 pseudo 105246380 Mm.406719 XR_877212 Gm41676 - - 18 A2|18 predicted gene, 41676 ncRNA 668504 Gm9209 EG668504 - 14|14 D3 predicted gene 9209 pseudo 16010 Mm.233799 NM_010517 ENSMUSG00000017493 Igfbp4 AI875747|Deb2|IBP-4|IGFBP-4 - 11|11 D insulin-like growth factor binding protein 4 protein-coding 27678 D11Moh30 - - - DNA segment, Chr 11, KL Mohlke 30 unknown 666397 Gm8083 EG666397 - 6|6 E3 ribosomal protein L21 pseudogene pseudo 71064 Mm.410795 4933406B15Rik - - 12|12 RIKEN cDNA 4933406B15 gene protein-coding 102637114 XR_390577 Gm34008 - - 4 B2|4 predicted gene, 34008 ncRNA 381350 Mm.330024 NM_001001334 ENSMUSG00000037708 Spag6 Spag6l - 2|2 A3 sperm associated antigen 6 protein-coding 670833 Mm.32213 NM_001354647 ENSMUSG00000084782 Gm11213 - - 4|4 C1 predicted gene 11213 protein-coding 111975 Mm.440180 NR_002855 ENSMUSG00000086266 Igf2os Igf2as|Peg8 - 7 F5|7 87.99 cM insulin-like growth factor 2, opposite strand ncRNA 381765 LOC381765 - - 6|6 B1 uncharacterized LOC381765 other 72855 2900024D18Rik - - 13|13 RIKEN cDNA 2900024D18 gene protein-coding 100035682 Etax6 - - - ethanol induced ataxia 6 unknown 58894 Mm.31983 NR_015597 ENSMUSG00000107476 Zfp862-ps 4732460K03Rik|AI448302|Zfp862|mKIAA0543 - 6|6 B2.3 zinc finger protein 862, pseudogene pseudo 116734 Cocrb1 - - - cocaine related behavior 1 unknown 102437 Mm.394654 AI036347 - - - expressed sequence AI036347 unknown 258248 Mm.377392 NM_001001805 ENSMUSG00000073962 Olfr576 MOR8-5|Olfr576-ps1 - 7|7 E3 olfactory receptor 576 protein-coding 100036007 Eac1 - - - ethyl alcohol consumption QTL 1 unknown 102637774 XR_383840 Gm34501 - - 15 A1|15 predicted gene, 34501 ncRNA 20817 Mm.288728 NM_009274 ENSMUSG00000062604 Srpk2 AW226533|AW492537|AW547358|Wbp6|mSRPK2 - 5 A3|5 10.36 cM serine/arginine-rich protein specific kinase 2 protein-coding 102641289 LOC102641289 - - - TBC1 domain family member 14 protein-coding 102633003 Gm30935 - - 9|9 predicted gene, 30935 ncRNA 100036132 Nidd1k - - - Nidd1 on KK-A unknown 100043232 Mm.240112 NR_030712 ENSMUSG00000085582 3110099E03Rik - - 2|2 E4 RIKEN cDNA 3110099E03 gene ncRNA 258343 Mm.377443 NM_146346 ENSMUSG00000057050 Olfr397 MOR135-28 - 11|11 B4 olfactory receptor 397 protein-coding 627479 Mm.469886 NM_001104620 ENSMUSG00000090961 Vmn2r8 EG627479 - 5|5 F vomeronasal 2, receptor 8 protein-coding 100042840 Mm.472681 NM_001113395 ENSMUSG00000095573 H2al2b Gm16501|H2al2y - Y A1|Y H2A histone family member L2B protein-coding 101055774 Gm15090 - - X F3|X 68.46 cM predicted gene 15090 pseudo 111288 Hmgn1-rs7 Hmg14-rs7 - - high mobility group nucleosomal binding domain 1, related sequence 7 pseudo 102637526 Mm.126865 XR_377812 Gm34312 Gm44201 - 6 D1|6 predicted gene, 34312 ncRNA 108169064 XR_001784941 Gm46919 - - 5 F|5 predicted gene, 46919 ncRNA 109903 Ht5 - - - T cell clone T5 antigen protein-coding 14803 Mm.121569 NM_008166 ENSMUSG00000041078 Grid1 GluD1|GluRdelta1 - 14 B|14 20.84 cM glutamate receptor, ionotropic, delta 1 protein-coding 18426 Mm.280225 NM_019935 ENSMUSG00000024922 Ovol1 BB147136|Ovo1|movo1 - 19|19 A ovo like zinc finger 1 protein-coding 110231 Igh-Ns2 - - - immunoglobulin heavy chain Ns2 other 12296 Mm.313930 NM_023116 ENSMUSG00000057914 Cacnb2 AW060387|CAB2|Cavbeta2|Cchb2 - 2 A2|2 10.7 cM calcium channel, voltage-dependent, beta 2 subunit protein-coding 108168630 XM_017318839 LOC108168630 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 102634692 XR_381646 Gm32219 - - 12 C2|12 predicted gene, 32219 ncRNA 110403 Evi25 - - - ecotropic viral integration site 25 protein-coding 102636803 Mm.421564 XR_880739 Gm15496 - - 3 A3|3 15.2 cM predicted gene 15496 ncRNA 223262 Mm.297637 NM_001037744 ENSMUSG00000071229 Timm8a2 - - 14|14 E5 translocase of inner mitochondrial membrane 8A2 protein-coding 100042682 Gm20935 - - Y|Y predicted gene, 20935 protein-coding 359916 DXMgc53 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 53 unknown 102635472 XR_386339 Gm32801 - - 18 E2|18 predicted gene, 32801 ncRNA 100035794 Tabw2 - - - tally ho associated body weight 2 unknown 112163575 Mm.246967 AA623676 - - - expressed sequence AA623676 protein-coding 625125 Gm6558 - - 3 A3|3 predicted gene 6558 pseudo 68734 Mm.87077 NM_211355 ENSMUSG00000041846 Ppp4r3a 1110034C04Rik|BC064465|Smek1|mKIAA2010 - 12|12 E protein phosphatase 4 regulatory subunit 3A protein-coding 17939 Mm.20325 NM_008669 ENSMUSG00000022453 Naga - - 15 E1|15 38.56 cM N-acetyl galactosaminidase, alpha protein-coding 105243900 Gm39621 - - 1|1 predicted gene, 39621 ncRNA 621953 Gm6270 EG621953 - 13|13 D2.2 predicted gene 6270 protein-coding 102636560 Gm33593 - - X|X predicted gene, 33593 pseudo 19512 Rb(2.18)6Rma Rb6Rma - - Robertsonian translocation, Chr 2 and 18, Universita di Roma 6 other 257999 Olfr349-ps1 MOR136-17P - 2|2 B olfactory receptor 349, pseudogene 1 pseudo 100502587 Fkbp1a-ps1 Fkbp-rs3|Fkbp1-rs3|Gm19266 - 14 D3|14 40.63 cM FK506 binding protein 1a, pseudogene 1 pseudo 62987 D18Mit208 - - - DNA Segment, Chr 18, Massachusetts Institute of Technology 208 unknown 216613 Mm.93759 NM_181577 ENSMUSG00000032878 Ccdc85a - - 11|11 A3.3 coiled-coil domain containing 85A protein-coding 100035962 Elads3 - - - ENU induced lung adenoma susceptibility 3 unknown 69692 Mm.245537 NM_027168 ENSMUSG00000000295 Hddc2 2310057G13Rik - 10|10 A4 HD domain containing 2 protein-coding 244218 Mm.249829 NM_198858 ENSMUSG00000060034 Ctf2 Gm494|NP - 7|7 F3 cardiotrophin 2 protein-coding 383887 Gm17742 - - 3|3 F1 zinc finger CCCH type containing 14 pseudogene pseudo 258538 Mm.377558 NM_146545 ENSMUSG00000096220 Olfr775 MOR111-6|MOR111-7|Olfr1518 - 10|10 D3 olfactory receptor 775 protein-coding 60947 DXMit48 - - X 25.51 cM DNA segment, Chr X, Massachusetts Institute of Technology 48 unknown 56709 Mm.103610 NM_019965 ENSMUSG00000020109 Dnajb12 Dj10|mDj10 - 10|10 B4 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 52054 Mm.441746 D4Ertd58e - - 4 21.26 cM DNA segment, Chr 4, ERATO Doi 58, expressed unknown 105247287 XM_011251101 LOC105247287 - - Y E X-linked lymphocyte-regulated protein PM1-like protein-coding 21433 tcl12 tcl-12 - - t-complex lethal 12 unknown 61856 D1Mit384 - - 1 42.78 cM DNA segment, Chr 1, Massachusetts Institute of Technology 384 unknown 67063 Mm.454013 NM_025944 ENSMUSG00000039611 Tmem246 2810432L12Rik|9330170P15Rik|AI835809 - 4|4 B1 transmembrane protein 246 protein-coding 102639930 XR_381295 Gm36128 - - 12 A1.1|12 predicted gene, 36128 ncRNA 239170 Mm.247582 NM_194345 ENSMUSG00000022095 Fam160b2 G430067P06Rik|Rai16 - 14|14 D2 family with sequence similarity 160, member B2 protein-coding 12776 Mm.442098 NM_007720 ENSMUSG00000042262 Ccr8 C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8 - 9|9 F4 chemokine (C-C motif) receptor 8 protein-coding 18168 Mm.10685 NM_016708 ENSMUSG00000044014 Npy5r NPY5-R|NPYY5-R|Y5R - 8 B3.1|8 33.15 cM neuropeptide Y receptor Y5 protein-coding 627912 Gm6809 - - 17 A3.2|17 myeloid/lymphoid or mixed lineage-leukemia translocation to 4 homolog pseudogene pseudo 106585 Mm.34706 NM_001025572 ENSMUSG00000034647 Ankrd12 2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874 - 17|17 E1.1 ankyrin repeat domain 12 protein-coding 105242928 XR_882051 Gm39000 - - 7 B3|7 predicted gene, 39000 ncRNA 234130 Mm.157322 NM_145592 ENSMUSG00000031535 Dkk4 Dkk-4 - 8|8 A2 dickkopf WNT signaling pathway inhibitor 4 protein-coding 637093 Mm.368463 NM_001195271 ENSMUSG00000078320 Tex13c1 Gm362|Tex13c - X|X A4 TEX13 family member C1 protein-coding 100217446 NR_028543 ENSMUSG00000064968 Snord47 MBII-96 - 1 H2.1|1 small nucleolar RNA, C/D box 47 snoRNA 100503101 Mm.70872 Gm17388 - - 4|4 68.53 cM predicted gene, 17388 ncRNA 102638031 XR_382149 Gm34697 - - 13 A3.1|13 predicted gene, 34697 ncRNA 102632489 XR_376620 Gm30548 - - 4 D2.2|4 predicted gene, 30548 ncRNA 66556 Mm.275446 NM_024176 ENSMUSG00000024914 Drap1 2310074H19Rik|NC2-alpha - 19|19 A Dr1 associated protein 1 (negative cofactor 2 alpha) protein-coding 545893 Mm.224739 NM_001034903 ENSMUSG00000072662 Mansc4 A430079E08|EG545893|Gm5887 - 6 G3|6 MANSC domain containing 4 protein-coding 100417400 Gm18590 - - 2|2 H3 Crx opposite strand transcript 1 pseudogene pseudo 667832 Gm12231 - - 11|11 B1.3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1 pseudogene pseudo 213084 Mm.280557 NM_153785 ENSMUSG00000020389 Cdkl3 AI852479|B230379H01Rik - 11|11 B1.3 cyclin-dependent kinase-like 3 protein-coding 100416284 Gm13924 - - 2|2 E3 ribosomal protein L17 pseudogene pseudo 673685 XR_001781353 Gm9603 - - 14 A1|14 predicted gene 9603 unknown 100418316 Gm19135 - - 12|12 C3 predicted gene, 19135 pseudo 382010 Mm.425534 NM_001009951 ENSMUSG00000038215 Cep44 4933440G23Rik|mKIAA1712 - 8|8 B2 centrosomal protein 44 protein-coding 545152 Gm5809 EG545152 - 16|16 B1 transmembrane protein 97 pseudogene pseudo 100418193 Gm19066 - - 3|3 E3 eukaryotic translation initiation factor 3, subunit M pseudogene pseudo 100035514 Ftms1 - - - fat mass 1 unknown 75359 Mm.334532 XR_001778770 4930555F03Rik A730024F11 - 8|8 B1.2 RIKEN cDNA 4930555F03 gene unknown 73353 Mm.30958 NM_028513 ENSMUSG00000051276 Actrt2 1700052K15Rik|Arp-T2|Arpm2 - 4|4 E2 actin-related protein T2 protein-coding 435946 Mm.484990 NM_001167146 ENSMUSG00000096761 Gm5726 EG435946|Vmn1r105 - 7|7 A3 predicted gene 5726 protein-coding 664724 Mm.437189 NM_001039942 Cypt9 - - - cysteine-rich perinuclear theca 9 protein-coding 27794 D2Dcr7 - - - DNA segment, Chr 2, Derry C. Roopenian 7 unknown 100526558 NR_037285 ENSMUSG00000092921 Mir344b mir-344b|mmu-mir-344b - 7 C|7 34.29 cM microRNA 344b ncRNA 105245023 XR_872904 Gm40537 - - 12 D3|12 predicted gene, 40537 ncRNA 105246295 Gm41599 - - 17|17 predicted gene, 41599 ncRNA 108168065 LOC108168065 - - 13 A1 NHP2-like protein 1 pseudogene pseudo 246221 Mm.294215 NM_138670 ENSMUSG00000071711 Mpst Mst - 15|15 E1 mercaptopyruvate sulfurtransferase protein-coding 20403 Mm.341204 NM_011365 ENSMUSG00000020640 Itsn2 AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256 - 12|12 A1.1 intersectin 2 protein-coding 69975 Mm.31786 2810405F17Rik AI452280 - 4|4 RIKEN cDNA 2810405F17 gene protein-coding 61258 D2Mit145 - - 2 86.75 cM DNA segment, Chr 2, Massachusetts Institute of Technology 145 unknown 320056 Mm.288645 6430511E19Rik - - 7|7 D3 RIKEN cDNA 6430511E19 gene protein-coding 105245938 Mm.4769 XR_875317 Gm26704 - - 15 B3.1|15 predicted gene, 26704 ncRNA 328633 Mm.393322 4930515I15 - - 16|16 A1 uncharacterized protein 4930515I15 protein-coding 613264 Mm.480195 NR_045482 ENSMUSG00000089997 1810020O05Rik - - 6 D1|6 Riken cDNA 1810020O05 gene ncRNA 72393 Mm.39760 NM_028224 ENSMUSG00000023011 Faim2 2900002L20Rik|Lfg|Lfg2|NMP25|Nmp35|Tmbim2 - 15|15 F1 Fas apoptotic inhibitory molecule 2 protein-coding 75917 4930572C08Rik - - 8|8 RIKEN cDNA 4930572C08 gene protein-coding 69678 Mm.81562 NR_015477 Atcayos 2310050B05Rik - 10|10 C1 ataxia, cerebellar, Cayman type, opposite strand ncRNA 12291 Mm.29585 NM_009783 ENSMUSG00000020866 Cacna1g Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123 - 11|11 D calcium channel, voltage-dependent, T type, alpha 1G subunit protein-coding 102637300 XR_377567 Gm34147 - - 6 B1|6 predicted gene, 34147 ncRNA 109571 Es8 Es-8 - - esterase 8 protein-coding 109194137 LOC109194137 - - - Fgf10 5' regulatory region biological-region 100113418 Frct4 - - - fear conditioning traits 4 unknown 100417884 Gm18879 - - 13|13 A1 lysophosphatidylcholine acyltransferase 4 pseudogene pseudo 68943 Mm.18539 NM_026880 ENSMUSG00000028756 Pink1 1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387 - 4|4 D3 PTEN induced putative kinase 1 protein-coding 666386 Gm13233 - - 4|4 E1 predicted gene 13233 pseudo 102641751 LOC102641751 - - - SUMO-conjugating enzyme UBC9 protein-coding 12465 Mm.282158 NM_007637 ENSMUSG00000022234 Cct5 CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098 - 15|15 B2 chaperonin containing Tcp1, subunit 5 (epsilon) protein-coding 105244495 Gm40092 - - 3|3 predicted gene, 40092 ncRNA 102639757 XR_387354 Gm35993 - - 1 E3|1 predicted gene, 35993 ncRNA 11498 Mm.408462 NM_009620 ENSMUSG00000072972 Adam4 AV274654|tMDCV - 12|12 D1 a disintegrin and metallopeptidase domain 4 protein-coding 78339 Mm.28947 NM_175274 ENSMUSG00000036565 Ttyh3 2900029G13Rik|AI414930|TTY3|mTTY3 - 5|5 G2 tweety family member 3 protein-coding 108654 Mm.125857 NM_153794 ENSMUSG00000038121 Fam210a 4933403F05Rik|AA987140|AV134576|AW491926 - 18|18 E2 family with sequence similarity 210, member A protein-coding 116870 Mm.212577 NM_054081 ENSMUSG00000021144 Mta1 - - 12|12 F1 metastasis associated 1 protein-coding 102634082 LOC102634082 - - X A5 60S ribosomal protein L38 pseudogene pseudo 71603 Mm.482639 9130004J05Rik - - 15|15 RIKEN cDNA 9130004J05 gene unknown 114322 Yaa3 Bxs2 - - Y-linked autoimmune acceleration QTL 3 unknown 109556 Sha - - - shaven unknown 102640522 XR_390506 Gm36562 - - 4 A5|4 predicted gene, 36562 ncRNA 105244259 XR_866618 4930527A07Rik - - 2|2 E3 RIKEN cDNA 4930527A07 gene ncRNA 108167347 XM_017313661 LOC108167347 - - 1 C5 component of Sp100-rs-like protein-coding 104352 Nuca - - - dominant nuclear cataract protein-coding 102634496 XR_377032 Gm32064 - - 5 C3.3|5 predicted gene, 32064 ncRNA 76214 Mm.444993 6430710M23Rik - - 8|8 RIKEN cDNA 6430710M23 gene protein-coding 81909 Mm.289471 NM_024231 ENSMUSG00000024792 Zfpl1 - - 19|19 A zinc finger like protein 1 protein-coding 102640032 Gm36202 - - 17|17 predicted gene, 36202 protein-coding 72244 Mm.187554 NM_028166 1600014C10Rik AI428873 - 7|7 B3 RIKEN cDNA 1600014C10 gene protein-coding 670482 Mm.386956 NM_001099313 ENSMUSG00000078259 Gm11554 - - 11|11 D predicted gene 11554 protein-coding 108168966 XR_001784342 LOC108168966 - - 4 C4 cadherin-2 pseudogene pseudo 20756 Mm.445310 NM_011469 ENSMUSG00000050092 Sprr2b - - 3 F1|3 40.14 cM small proline-rich protein 2B protein-coding 76804 Mm.209059 NM_144787 ENSMUSG00000028397 Kdm4c 2410141F18Rik|AA517467|Gasc1|Jmjd2c - 4|4 C3 lysine (K)-specific demethylase 4C protein-coding 102640981 XR_386657 Gm36914 - - 19 C1|19 predicted gene, 36914 ncRNA 104754 AI115515 - - - expressed sequence AI115515 unknown 107029 Mm.36817 NM_145494 ENSMUSG00000024556 Me2 AW120568|D030040L20Rik|NAD-ME - 18|18 E2 malic enzyme 2, NAD(+)-dependent, mitochondrial protein-coding 74646 Mm.30 NM_029035 ENSMUSG00000039911 Spsb1 1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1 - 4|4 E2 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 546347 Mm.380183 NM_001034103 ENSMUSG00000071726 Gm5941 EG546347 - X C3|X predicted gene 5941 protein-coding 108167842 XR_001779882 Gm46248 - - 1 H5|1 predicted gene, 46248 ncRNA 105245648 XR_873991 LOC105245648 - - 13 D2.3 uncharacterized LOC105245648 ncRNA 22183 Mm.29542 NM_011663 ENSMUSG00000044068 Zrsr1 D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs - 11 A3.2|11 14.24 cM zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 protein-coding 110560 H2-T4 H-2T4 - - histocompatibility 2, T region locus 4 protein-coding 109819 Mr66-2 - - - middle repeat MR66-2 protein-coding 74277 Mm.239814 NM_028850 ENSMUSG00000029229 Chic2 1700081B18Rik|4930502K01Rik|BTL - 5|5 C3.3 cysteine-rich hydrophobic domain 2 protein-coding 78139 Mm.160052 4933439N14Rik - - 8|8 RIKEN cDNA 4933439N14 gene protein-coding 110120473 LOC110120473 - - - VISTA enhancer mm1474 biological-region 29858 Mm.18939 NM_013872 ENSMUSG00000022474 Pmm1 C77612 - 15|15 E1 phosphomannomutase 1 protein-coding 102641995 XR_878976 Gm38590 Gm45578 - 8 C2|8 predicted gene, 38590 ncRNA 407834 Mm.263288 BC049688 - - - cDNA sequence BC049688 ncRNA 22238 Mm.291575 NM_009467 ENSMUSG00000054630 Ugt2b5 AI118071|M-1|Udpgt-3|Udpgt2b5|Ugt2b17 - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide B5 protein-coding 75100 Mm.78599 NR_040738 4930525D18Rik - - 9|9 F3 RIKEN cDNA 4930525D18 gene ncRNA 18347 Mm.246539 NM_010990 ENSMUSG00000075072 Olfr48 C3|IC3|MOR232-5 - 2|2 E1 olfactory receptor 48 protein-coding 61187 D19Mit68 - - 19 3.38 cM DNA segment, Chr 19, Massachusetts Institute of Technology 68 unknown 666686 Gm8238 EG666686 - 15|15 A1 superoxide dismutase 1, soluble pseudogene pseudo 105245306 XR_872114 Gm40781 - - 10 D2|10 predicted gene, 40781 ncRNA 102635099 Gm21916 - - Y|Y predicted gene, 21916 protein-coding 100534361 Gm21042 - - 5|5 B3 isocitrate dehydrogenase 3 (NAD+) beta pseudogene pseudo 61746 D4Mit269 - - 4 24.38 cM DNA segment, Chr 4, Massachusetts Institute of Technology 269 unknown 105244374 XR_867030 ENSMUSG00000086840 Gm14250 - - 2 H3|2 89.38 cM predicted gene 14250 ncRNA 100042263 Gm3755 - - 14 A1|14 predicted gene 3755 pseudo 633246 Gm7108 EG633246 - X|X C1 splicing factor, arginine/serine-rich 2, interacting protein pseudogene pseudo 665562 Mm.444358 NM_001258458 Rpl31-ps12 EG665562|Gm7689 - 16|16 A3 ribosomal protein L31, pseudogene 1 2 protein-coding 15433 Mm.57227 NM_008275 ENSMUSG00000001819 Hoxd13 Hox-4.8|spdh - 2 C3|2 44.13 cM homeobox D13 protein-coding 101033 BB136935 - - - expressed sequence BB136935 unknown 215472 Mm.255656 NM_174999 ENSMUSG00000053420 Gm4792 E130012K09|EG215472 - 10 C2|10 predicted gene 4792 ncRNA 382695 Ighv1-56 Gm16791 - 12|12 F2 immunoglobulin heavy variable 1-56 other 100040681 Hspe1-ps1 10kDa|Cpn10-rs2|Gm2903 - 12 C2|12 heat shock protein 1 (chaperonin 10), pseudogene 1 pseudo 15312 Mm.2756 NM_008251 ENSMUSG00000040681 Hmgn1 HMG-14|Hmg14 - 16 C4|16 56.83 cM high mobility group nucleosomal binding domain 1 protein-coding 217169 Mm.262067 NM_172564 ENSMUSG00000017607 Tns4 9930017A07Rik|AA589547|AU016405|Cten - 11|11 D tensin 4 protein-coding 492956 Cocia7 - - 5 85.17 cM cocaine induced activation 7 unknown 102639602 XR_377602 Gm35875 - - 6 B2.3|6 predicted gene, 35875 ncRNA 433347 Mm.325009 NR_151623 ENSMUSG00000100106 Gm28856 - - 1|1 E4 predicted gene 28856 ncRNA 100038810 Mcdq1 - - - molar crown diameter QTL 1 unknown 74097 Mm.290242 NM_028753 ENSMUSG00000029715 Pop7 0610037N12Rik|AI852017|Rpp20 - 5|5 G2 processing of precursor 7, ribonuclease P family, (S. cerevisiae) protein-coding 102633054 XR_388760 Gm45917 - - 11 B3|11 predicted gene, 45917 ncRNA 77397 Mm.118350 NM_029906 ENSMUSG00000020177 9530003J23Rik Lyzf1 - 10|10 D2 RIKEN cDNA 9530003J23 gene protein-coding 66757 Mm.331841 NM_025748 ENSMUSG00000019808 Adat2 4933426M09Rik|Deadc1 - 10|10 A2 adenosine deaminase, tRNA-specific 2 protein-coding 108169028 LOC108169028 - - 5 A3 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 66249 Mm.27831 NM_025443 ENSMUSG00000020116 Pno1 1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3 - 11|11 A2 partner of NOB1 homolog protein-coding 381260 Mm.486706 NM_001013771 ENSMUSG00000047361 Gm973 AW554518 - 1|1 C2 predicted gene 973 protein-coding 12064 Mm.1442 NM_007540 ENSMUSG00000048482 Bdnf - - 2 E3|2 56.63 cM brain derived neurotrophic factor protein-coding 360101 D17Brg11 - - - DNA segment, Chr 17, David E. Bergstrom 11 unknown 224840 Mm.131234 NM_172623 ENSMUSG00000051682 Treml4 5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3 - 17|17 C triggering receptor expressed on myeloid cells-like 4 protein-coding 102636140 Mm.421276 XR_387308 Gm28867 - - 1 E2.3|1 predicted gene 28867 ncRNA 102635111 XR_387963 Gm32531 Gm45390 - 8 D2|8 predicted gene, 32531 ncRNA 105243918 XR_865405 Gm39635 - - 1 C1.1|1 predicted gene, 39635 ncRNA 102638549 Gm35085 - - 11|11 predicted gene, 35085 ncRNA 226861 Mm.145857 NM_144881 ENSMUSG00000037375 Hhat 2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will - 1|1 H6 hedgehog acyltransferase protein-coding 319829 Mm.123696 NM_177011 9330154K18Rik - - 15|15 D1 RIKEN cDNA 9330154K18 gene unknown 102636556 XR_389645 Gm33590 - - 3 A3|3 predicted gene, 33590 ncRNA 60960 D9Mit99 - - 9 26.59 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 99 unknown 11421 Mm.754 NM_009598 ENSMUSG00000020681 Ace AW208573|CD143 - 11 E1|11 68.84 cM angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 protein-coding 102634427 Gm32012 - - 11|11 predicted gene, 32012 ncRNA 14963 Mm.477808 NM_008199 ENSMUSG00000073406 H2-Bl H2-B1|H2-Bl-like - 17 B1|17 18.89 cM histocompatibility 2, blastocyst protein-coding 100036231 Nbwa2 Sle15 - 4 16.86 cM NZB and NZW autoimmunity 2 unknown 97801 C78807 - - - expressed sequence C78807 protein-coding 105245884 Gm41266 - - 15|15 predicted gene, 41266 ncRNA 105246251 XR_876728 Gm41559 - - 17 A3.3|17 predicted gene, 41559 ncRNA 68036 Mm.371631 NM_026521 ENSMUSG00000062397 Zfp706 3110006P09Rik|AA793007|AW536850|C77232|Znf706 - 15|15 B3.1 zinc finger protein 706 protein-coding 63012 D19Mit131 - - 19 21.53 cM DNA Segment, Chr 19, Massachusetts Institute of Technology 131 unknown 331547 Mm.101344 NR_015600 ENSMUSG00000084771 A230072E10Rik C130073P14|Gm15139 - X|X F3 RIKEN cDNA A230072E10 gene ncRNA 102637344 XR_385682 Gm34179 - - 17 E1.1|17 predicted gene, 34179 ncRNA 16433 Mm.142717 NM_008411 ENSMUSG00000040205 Cuzd1 Erg-1|Itmap1|Uo-44|Usg|Utczp - 7|7 F3 CUB and zona pellucida-like domains 1 protein-coding 723852 NR_029853 ENSMUSG00000070106 Mir363 Mirn363|mir-363|mmu-mir-363 - X A5|X microRNA 363 ncRNA 101055980 LOC101055980 - - 13 D2.2 electron transfer flavoprotein subunit alpha, mitochondrial pseudogene pseudo 638575 Mm.196685 Gm9779 - - 14|14 predicted gene 9779 unknown 12606 Mm.349667 NM_007678 ENSMUSG00000034957 Cebpa C/ebpalpha|CBF-A|Cebp - 7 B2|7 21.02 cM CCAAT/enhancer binding protein (C/EBP), alpha protein-coding 14942 Mm.14424 NM_010373 ENSMUSG00000022156 Gzme CCP3|Ctla-6|Ctla6|MCSP-2 - 14 C3|14 28.19 cM granzyme E protein-coding 320430 Mm.400874 C230073G13Rik - - 17|17 RIKEN cDNA C230073G13 gene protein-coding 338337 Mm.86507 NM_177381 ENSMUSG00000034893 Cog3 E430004N23 - 14|14 D3 component of oligomeric golgi complex 3 protein-coding 100042519 XR_001784306 Gm3883 Gm10598 - 4|4 A5 predicted gene 3883 pseudo 69183 Mm.390374 NM_026979 ENSMUSG00000046491 C1qtnf2 1810033K05Rik|CTRP2 - 11|11 B1.1 C1q and tumor necrosis factor related protein 2 protein-coding 102533 Mm.436832 AI465300 - - - expressed sequence AI465300 unknown 102635571 Gm32868 - - 17|17 predicted gene, 32868 pseudo 67679 Mm.392588 0710001D07Rik - - 17|17 RIKEN cDNA 0710001D07 gene protein-coding 18209 Mm.259542 NM_010947 ENSMUSG00000036473 Ntn3 Ntn2l - 17|17 A3.3 netrin 3 protein-coding 100303751 Mm.484707 NR_028481 ENSMUSG00000065147 Snora31 MBI-161 - 14|14 D3 small nucleolar RNA, H/ACA box 31 snoRNA 97723 C80060 - - - expressed sequence C80060 protein-coding 493117 Angfq3 - - 15 20.0 cM angiogenesis due to FGF2 QTL 3 unknown 320322 Mm.442143 C230075M21Rik - - 18|18 RIKEN cDNA C230075M21 gene ncRNA 105246784 Gm42022 - - 5|5 predicted gene, 42022 ncRNA 72349 Mm.196295 NM_028207 ENSMUSG00000003518 Dusp3 2210015O03Rik|5031436O03Rik|T-DSP11|VHR - 11|11 D dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related) protein-coding 85031 Mm.279805 NM_134102 ENSMUSG00000002847 Pla1a AA986889|Ps-pla1|Pspla1 - 16 B4|16 26.83 cM phospholipase A1 member A protein-coding 102631627 XR_867969 Gm29922 - - 4 C7|4 predicted gene, 29922 ncRNA 105246133 XR_876158 Gm41472 - - 16 C3.1|16 predicted gene, 41472 ncRNA 111913 Iapls3-49 - - - intracisternal A particle, lymphocyte specific, probe 3-49 other 69743 Mm.233879 NM_027195 ENSMUSG00000028977 Casz1 2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e - 4 E2|4 78.87 cM castor zinc finger 1 protein-coding 61043 DXMit139 - - X 9.13 cM DNA segment, Chr X, Massachusetts Institute of Technology 139 unknown 61281 D2Mit258 - - 2 63.22 cM DNA segment, Chr 2, Massachusetts Institute of Technology 258 unknown 105244923 XR_872833 Gm40445 - - 12 C3|12 predicted gene, 40445 ncRNA 232807 Mm.360391 NM_029834 ENSMUSG00000019254 Ppp1r12c 2410197A17Rik|AI839747|B430101M08|Mbs85 - 7|7 A1 protein phosphatase 1, regulatory (inhibitor) subunit 12C protein-coding 100039668 Gm12397 - - 4|4 A5 lysine (K)-specific demethylase 2B pseudogene pseudo 73457 Mm.383439 NR_045288 ENSMUSG00000100211 1700064M15Rik - - 12|12 E RIKEN cDNA 1700064M15 gene ncRNA 105246222 Gm41535 - - 17|17 predicted gene, 41535 ncRNA 320560 Mm.426874 NM_177192 ENSMUSG00000030313 Dennd5b 9330160C06Rik|AI852444|D030011O10Rik|Gm17524 - 6|6 G3 DENN/MADD domain containing 5B protein-coding 102633438 Mm.404699 XR_374883 Gm13974 - - 2 E4|2 57.88 cM predicted gene 13974 ncRNA 436062 Mm.334852 NM_001033980 ENSMUSG00000042269 Fam92b 1700120B06Rik - 8|8 E1 family with sequence similarity 92, member B protein-coding 85166 D8Mit357 - - - DNA Segment, Chr 8, Massachusetts Institute of Technology 357 unknown 207958 Mm.267439 NM_183142 ENSMUSG00000063362 Alg11 AI849156|AW492253|B230397C21|Mmat-4(5) - 8|8 A2 asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase) protein-coding 102634857 XR_386578 Gm32341 - - 19 B|19 predicted gene, 32341 ncRNA 72301 Mm.275387 NM_001163145 ENSMUSG00000062760 1810041L15Rik Kiaa1644|Shisal1 - 15|15 E2 RIKEN cDNA 1810041L15 gene protein-coding 100416948 Gm18331 - - 3|3 F2.1 chymotrypsin C (caldecrin) pseudogene pseudo 60989 D19Mit9 - - 19 38.97 cM DNA segment, Chr 19, Massachusetts Institute of Technology 9 unknown 100041738 Gm3489 - - 1|1 C1.1 predicted gene 3489 pseudo 61861 D1Mit370 - - 1 75.22 cM DNA segment, Chr 1, Massachusetts Institute of Technology 370 unknown 75374 4930595O18Rik Gm43939 - 6|6 RIKEN cDNA 4930595O18 gene protein-coding 100101410 Pbwg1.4 - - - postnatal body weight growth 1.4 unknown 100312552 Vmn1r-ps123 Gm11044 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 123 pseudo 234912 Mm.172430 NM_199017 ENSMUSG00000053070 9230110C19Rik - - 9|9 A1 RIKEN cDNA 9230110C19 gene protein-coding 207777 Mm.342019 NM_172449 ENSMUSG00000034156 Tspoap1 Bzrap1|D230016K05|PRAX-1|mKIAA0612 - 11|11 C TSPO associated protein 1 protein-coding 100417610 Gm18714 - - 15|15 A1 ring finger and WD repeat domain 2 pseudogene pseudo 111162622 LOC111162622 - - - DeltaNp63 promoter of tumor protein p63 biological-region 66515 Mm.329078 NM_025611 ENSMUSG00000038545 Cul7 2510004L20Rik|AA409809|C230011P08Rik|p185|p193 - 17|17 C cullin 7 protein-coding 213006 Mm.208445 NM_172510 ENSMUSG00000059149 Mfsd4a A230072B04|A930031D07Rik|AI850289|Mfsd4 - 1|1 E4 major facilitator superfamily domain containing 4A protein-coding 21319 T(X;7)2Rl T2Rl - - reciprocal translocation, Chr X and 7, Russell 2 other 100862180 XM_011251125 LOC100862180 - - - PRAME family member 8-like protein-coding 102633480 XR_386318 Gm31294 Gm45482 - 18 E2|18 predicted gene, 31294 ncRNA 61720 D5Mit298 - - 5 27.02 cM DNA segment, Chr 5, Massachusetts Institute of Technology 298 unknown 21237 T(6F;18C)57Dn T(6;18)57Dn|T57Dn - - reciprocal translocation, Chr 6, cytogenetic band F; and Chr 18, cytogenetic band C, Davisson 57 other 76126 5830490A04Rik - - 10|10 RIKEN cDNA 5830490A04 gene protein-coding 258088 Olfr300-ps1 MOR234-4P - 7|7 D3 olfactory receptor 300, pseudogene 1 pseudo 11905 Mm.260770 NM_080844 ENSMUSG00000026715 Serpinc1 AI114908|ATIII|At-3|At3 - 1 H2.1|1 69.75 cM serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1 protein-coding 106989 AU022136 - - - expressed sequence AU022136 unknown 62922 D10Mit255 - - 10 22.83 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 255 unknown 102635356 Gm14197 - - 2|2 76.38 cM predicted gene 14197 protein-coding 15499 Mm.347444 NM_008296 ENSMUSG00000022556 Hsf1 AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta - 15 D3|15 35.95 cM heat shock factor 1 protein-coding 69732 Mm.391403 NM_028362 ENSMUSG00000073164 2410018L13Rik 2810480C08Rik - 12|12 A1.3 RIKEN cDNA 2410018L13 gene ncRNA 66109 Mm.254663 NM_025359 ENSMUSG00000020577 Tspan13 1100001I23Rik|NET-6|Tm4sf13 - 12|12 A3 tetraspanin 13 protein-coding 69900 Mm.348004 NM_178620 ENSMUSG00000020818 Mfsd11 2600014M03Rik - 11|11 E2 major facilitator superfamily domain containing 11 protein-coding 228731 Mm.315498 NM_023504 ENSMUSG00000054160 Nkx2-4 1700001P03Rik|Nkx-2.4|tinman - 2|2 G2 NK2 homeobox 4 protein-coding 102632206 XR_380602 Gm30346 - - 10 C1|10 predicted gene, 30346 ncRNA 102634009 Gm31699 - - 2|2 predicted gene, 31699 ncRNA 23921 Mm.425294 NM_018825 ENSMUSG00000005057 Sh2b2 Aps - 5|5 G2 SH2B adaptor protein 2 protein-coding 258129 Olfr408-ps1 MOR125-2P - 11|11 B5 olfactory receptor 408, pseudogene 1 pseudo 102633204 XR_380940 Gm31091 - - 10 D3|10 predicted gene, 31091 ncRNA 61318 D3Mit161a D3Mit161 - 3 69.1 cM DNA segment, Chr 3, Massachusetts Institute of Technology 161a unknown 100124346 Traj42 Gm16922 - 14|14 C2 T cell receptor alpha joining 42 other 22288 Mm.331784 NM_011682 ENSMUSG00000019820 Utrn AA589569|DRP|Dmdl - 10 A1-A2|10 3.77 cM utrophin protein-coding 258438 Mm.357743 NM_146446 ENSMUSG00000050654 Olfr215 MOR119-2 - 6|6 E3 olfactory receptor 215 protein-coding 329562 Mm.123101 NM_177851 ENSMUSG00000006462 A530013C23Rik - - 2|2 H3 RIKEN cDNA A530013C23 gene ncRNA 654459 Mm.358531 NM_001039122 ENSMUSG00000074678 Defb25 BD-25|mBD-25 - 2 H1|2 defensin beta 25 protein-coding 100217469 NR_028562 Snord91a MBII-296 - 11 B5|11 small nucleolar RNA, C/D box 91A snoRNA 102631517 XR_376217 Gm29836 - - 3 H3|3 predicted gene, 29836 ncRNA 68730 Mm.180622 NM_026824 ENSMUSG00000025155 Dus1l 1110032N12Rik - 11|11 E2 dihydrouridine synthase 1-like (S. cerevisiae) protein-coding 329554 Mm.291144 NM_001033411 ENSMUSG00000074623 Gm826 - - 2|2 H2 predicted gene 826 protein-coding 215748 Mm.37984 NM_172546 ENSMUSG00000015202 Cnksr3 6820402C05|BC024086|Magi1 - 10|10 A1 Cnksr family member 3 protein-coding 102637574 XR_376033 Gm34349 - - 3 G1|3 predicted gene, 34349 ncRNA 105245604 XM_017315697 Gm41035 - - 13 D1|13 predicted gene, 41035 protein-coding 110057 Pad2 - - - MMTV LTR integration site 2 protein-coding 404237 Mm.297430 NM_207536 Mrgpra8 MrgA8 - - MAS-related GPR, member A8 protein-coding 27550 D5Buc9 350I23.SP6 - 5 37.43 cM DNA segment, Chr 5, Bucan 9 unknown 100126432 Trgj3 Gm16604 - 13|13 A2 T cell receptor gamma joining 3 other 102639003 XM_006523137 Gm35427 - - 16 C3.3|16 predicted gene, 35427 protein-coding 319758 Mm.32081 NM_001033536 ENSMUSG00000037674 Rfx7 2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2 - 9|9 D regulatory factor X, 7 protein-coding 19296 Mm.4608 NM_011222 ENSMUSG00000097039 Pvt1 Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1 - 15 D1|15 26.24 cM Pvt1 oncogene ncRNA 73400 Mm.416864 NR_045348 ENSMUSG00000100681 1700064J06Rik - - 10|10 D2 RIKEN cDNA 1700064J06 gene ncRNA 235779 Mm.490872 NM_001004145 Nlrp4g nalp4g - 9|9 F4 NLR family, pyrin domain containing 4G protein-coding 100042693 Mm.402024 Gm3970 - - 5 F|5 predicted gene 3970 protein-coding 109970 Rmp3 Rmp-3 - - resistance to mousepox 3 protein-coding 114175 Etohcta9 - - 11 45.76 cM ethanol conditioned taste aversion 9 unknown 102633095 XR_389002 Gm31005 - - 11 D|11 predicted gene, 31005 ncRNA 233561 Mm.234591 XR_869826 Gm38405 A430054B03|Gm44900 - 7|7 E2 predicted gene, 38405 unknown 381924 Mm.334257 NM_001029872 ENSMUSG00000070369 Itgad Cd11d - 7|7 F3 integrin, alpha D protein-coding 60853 D5Mit89 - - 5 48.47 cM DNA segment, Chr 5, Massachusetts Institute of Technology 89 unknown 102638725 XR_001778237 Gm35219 - - 7 E2|7 predicted gene, 35219 ncRNA 62228 D17Mit34 - - 17 18.31 cM DNA segment, Chr 17, Massachusetts Institute of Technology 34 unknown 622271 Gm6305 EG622271 - 16|16 A1 Wdr45 like pseudogene pseudo 53061 195g2B - - - DNA segment, 195g2B unknown 71756 Mm.290614 NM_027904 ENSMUSG00000023176 Cpn2 1300018K11Rik - 16|16 B2 carboxypeptidase N, polypeptide 2 protein-coding 56835 Mm.315715 NM_020284 ENSMUSG00000055679 Ctsr AI428350 - 13 B2|13 32.67 cM cathepsin R protein-coding 74998 Mm.24167 NM_001033172 ENSMUSG00000040022 Rab11fip2 4930470G04Rik|A830046J09Rik|AW558126|Nrip11 - 19|19 D3 RAB11 family interacting protein 2 (class I) protein-coding 108167784 XR_001779693 Gm46202 - - 1 H6|1 predicted gene, 46202 ncRNA 258168 Mm.377368 NM_001011536 ENSMUSG00000060888 Olfr566 GA_x5J8B7W5P47-379997-380552|MOR14-7P - 7|7 E3 olfactory receptor 566 protein-coding 100034926 Scfq2 - - - subcutaneous fat pad weight QTL 2 unknown 12944 Mm.28767 NM_007768 ENSMUSG00000037942 Crp AI255847 - 1 H3|1 80.13 cM C-reactive protein, pentraxin-related protein-coding 66594 Mm.379119 NM_025650 ENSMUSG00000020163 Uqcr11 0710008D09Rik|AL022707|Uqcr - 10|10 C1 ubiquinol-cytochrome c reductase, complex III subunit XI protein-coding 13122 Mm.57029 NM_007824 ENSMUSG00000028240 Cyp7a1 - - 4|4 A1 cytochrome P450, family 7, subfamily a, polypeptide 1 protein-coding 16333 Mm.46269 NM_008386 ENSMUSG00000035804 Ins1 Ins-1|Ins2-rs1 - 19 D2|19 46.76 cM insulin I protein-coding 76852 3830403N01Rik - - - RIKEN cDNA 3830403N01 gene protein-coding 385668 Mm.24626 NM_001001492 ENSMUSG00000045275 Lca5l 4921526F01Rik|Lcca5l - 16|16 C4 Leber congenital amaurosis 5-like protein-coding 102632029 XR_377163 Gm30206 - - 5 G2|5 predicted gene, 30206 ncRNA 61022 D6Mit170 - - 6 11.28 cM DNA segment, Chr 6, Massachusetts Institute of Technology 170 unknown 327959 Mm.291131 NM_001037713 ENSMUSG00000040483 Xaf1 Fbox39 - 11|11 B4 XIAP associated factor 1 protein-coding 20964 Mm.439844 NM_013680 ENSMUSG00000037217 Syn1 Syn-1|Syn1-S - X A1.3|X 16.37 cM synapsin I protein-coding 111148 Odc-rs10 BRS-10|Odc-10 - - ornithine decarboxylase, related sequence 10 pseudo 74635 Mm.410825 NR_040545 ENSMUSG00000105838 4930425O10Rik - - 3|3 H1 RIKEN cDNA 4930425O10 gene ncRNA 16483 Mm.13052 NM_010594 ENSMUSG00000032758 Kap AW146435|FKSG22 - 6 G1|6 64.03 cM kidney androgen regulated protein protein-coding 105242822 Sspnos Gm15705 - 6|6 77.7 cM sarcospan, opposite strand ncRNA 102639475 XR_390195 Gm35779 - - 4 D2.3|4 predicted gene, 35779 ncRNA 78202 Mm.445941 NR_130997 ENSMUSG00000108034 4930557K07Rik Gm43989 - 6|6 F2 RIKEN cDNA 4930557K07 gene ncRNA 81014 Mm.261621 NM_030739 ENSMUSG00000078808 Vmn1r58 V1rd4|V3R4 - 7|7 A1 vomeronasal 1 receptor 58 protein-coding 102632638 Mm.402055 Gm26628 - - 6|6 predicted gene, 26628 ncRNA 73768 4833417J16Rik - - 15|15 RIKEN cDNA 4833417J16 gene protein-coding 402752 C130068B02Rik - - 17|17 RIKEN cDNA C130068B02 gene protein-coding 102634321 XR_380253 Gm31930 - - 10 B1|10 predicted gene, 31930 ncRNA 100503358 Mm.483762 Gm19654 - - 9|9 55.61 cM predicted gene, 19654 unknown 105243593 LOC105243593 - - 13 D2.3 60S ribosomal protein L23a pseudogene pseudo 100040298 Mm.260904 NM_001358087 Gm15501 EyeLinc5 - 7|7 E1 predicted pseudogene 15501 protein-coding 66809 Mm.28042 NM_023256 ENSMUSG00000035775 Krt20 9030623C06Rik|Ck-20|Ck20|K20|Krt21 - 11|11 D keratin 20 protein-coding 20689 Mm.215917 NM_178280 ENSMUSG00000024565 Sall3 B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt - 18|18 E3 spalt like transcription factor 3 protein-coding 268470 Mm.38802 NM_172300 ENSMUSG00000014349 Ube2z AW049199|C030047H17Rik|D11Moh35 - 11 D|11 59.28 cM ubiquitin-conjugating enzyme E2Z protein-coding 102635171 XR_386826 Gm32575 - - 19 D2|19 predicted gene, 32575 ncRNA 100124664 Trbv8 - - 6|6 B1 T cell receptor beta variable 8 pseudo 404222 Mm.457873 NM_001005520 ENSMUSG00000046486 Olfr231 MOR105-4|Olfr231-ps1|Olfr244|Olfr244-ps1|Olfr425|Olfr425-ps1 - 1|1 H3 olfactory receptor 231 protein-coding 227357 Mm.318167 NM_001033292 ENSMUSG00000049515 Espnl Gm556 - 1|1 D espin-like protein-coding 62040 D5Mit426 - - 5 64.17 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 426 unknown 359978 DXMgc115 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 115 unknown 105244565 XR_867676 Gm40158 - - 3 H1|3 predicted gene, 40158 ncRNA 19503 Rb(16.19)1Bu Rb1Bu - - Robertsonian translocation, Chr 16 and 19, Burdette 1 other 108168950 XR_001784305 Gm46857 - - 4 A5|4 predicted gene, 46857 pseudo 102639933 XR_386984 Gm36131 - - X C3|X predicted gene, 36131 ncRNA 102640276 Gm36387 - - 8 B1.3|8 predicted gene, 36387 pseudo 100035632 Bomd5 - - 1 88.97 cM bone mineral density 5 unknown 100043236 Gm13977 - - 2|2 E4 predicted gene 13977 protein-coding 668612 Mm.469896 NM_001105061 ENSMUSG00000091528 Gm9268 EG668612|Vmn2r64 - 7|7 B3 predicted gene 9268 protein-coding 107698 Tim - - - translocation induced circling mutation unknown 629794 Gm7004 EG629794 - 14|14 D3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 pseudogene pseudo 60596 Mm.143831 NM_021896 ENSMUSG00000033910 Gucy1a1 1200016O07Rik|GCS-alpha-1|GCS-alpha-3|Gucy1a3|sGC-alpha1 - 3|3 E3 guanylate cyclase 1, soluble, alpha 1 protein-coding 195359 Mm.32606 NM_001033235 ENSMUSG00000073399 Trim40 Gm319|Gm35|Gm865 - 17|17 B1 tripartite motif-containing 40 protein-coding 268663 Mm.315382 NM_001033364 ENSMUSG00000034918 Cdhr2 Gm624|PC-LKC|Pcdh24 - 13|13 B1 cadherin-related family member 2 protein-coding 61059 D4Mit267 - - 4 14.03 cM DNA segment, Chr 4, Massachusetts Institute of Technology 267 unknown 12744 clf2 - - - cleft lip 2 unknown 18096 Mm.193072 NM_144955 ENSMUSG00000035187 Nkx6-1 NKX6A|Nkx6.1 - 5|5 E4 NK6 homeobox 1 protein-coding 100418420 Gm19200 - - X|X D UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2 pseudogene pseudo 106496 AA517668 - - - expressed sequence AA517668 unknown 106345156 Gm45933 - - 11 A1|11 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 pseudogene pseudo 11957 Mm.353 NM_016755 ENSMUSG00000022890 Atp5j CF6 - 16|16 C3.3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F protein-coding 104470 AU015555 - - - expressed sequence AU015555 unknown 74056 4933402E15Rik - - 11|11 RIKEN cDNA 4933402E15 gene protein-coding 76101 5830461L22Rik - - 9|9 RIKEN cDNA 5830461L22 gene protein-coding 665855 Gm7824 - - 3 B|3 ferritin light chain 1 pseudogene pseudo 105246877 Gm42083 - - 11|11 predicted gene, 42083 protein-coding 433752 Mm.425205 NM_001004178 ENSMUSG00000087385 Frg2f1 AA415398 - 4|4 D2.1 FSHD region gene 2 family member 1 protein-coding 27874 D16Smh580 - - - DNA segment, Chr 16, St. Mary's Hospital 580 unknown 28114 Mm.260009 NM_145354 ENSMUSG00000021595 Nsun2 D13Wsu123e|Misu - 13 C1|13 35.55 cM NOL1/NOP2/Sun domain family member 2 protein-coding 100038464 Mm.475126 NR_040409 ENSMUSG00000074398 Gm15441 - - 3 F2.1|3 predicted gene 15441 ncRNA 78349 Mm.52612 NR_040756 ENSMUSG00000100294 1700034K08Rik - - 9|9 E3.3 RIKEN cDNA 1700034K08 gene ncRNA 100041358 Mm.394188 Gm3289 - - 6 A3.1|6 predicted gene 3289 unknown 12812 Mm.268004 NM_016706 ENSMUSG00000033983 Coil C79982|Cln80|p80|p80-coilin - 11 C|11 54.34 cM coilin protein-coding 102467411 n-TRtct4 n-Tr25 - 11 B3|11 nuclear encoded tRNA arginine 4 (anticodon TCT) tRNA 545653 Mm.489586 NM_001243166 ENSMUSG00000099420 Gm13279 - - 4 C4|4 predicted gene 13279 protein-coding 108168591 XM_017318797 Gm21794 - - Y C3|Y predicted gene, 21794 protein-coding 629393 Mm.372867 NR_046030 Gm20759 - - 11|11 C predicted gene, 20759 ncRNA 66566 Mm.25296 NM_025636 ENSMUSG00000031851 Ntpcr 2310079N02Rik|AI449709 - 8|8 E2 nucleoside-triphosphatase, cancer-related protein-coding 102638171 Gm34798 - - 17|17 predicted gene, 34798 ncRNA 109511 Alcp10 - - 5 26.02 cM alcohol preference locus 10, female specific unknown 76224 Mm.425312 6530409C15Rik - - 6|6 A3.2 RIKEN cDNA 6530409C15 gene protein-coding 110948 Mm.30921 NM_139145 ENSMUSG00000040820 Hlcs 410I21.SP6|D16Jhu34 - 16 C4|16 55.12 cM holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase) protein-coding 110909 Chuk-rs1 - - - conserved helix-loop-helix ubiquitous kinase, related sequence 1 protein-coding 622553 Gm6332 EG622553 - 16|16 A1 ZW10 interactor pseudogene pseudo 102640850 Gm11788 - - 11|11 84.19 cM predicted gene 11788 ncRNA 77921 Mm.491525 A030005K14Rik BB150353 - 1|1 C5 RIKEN cDNA A030005K14 gene unknown 226025 Mm.131943 NM_177341 ENSMUSG00000052387 Trpm3 6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2 - 19|19 B transient receptor potential cation channel, subfamily M, member 3 protein-coding 103964 Mm.333022 NM_001003405 ENSMUSG00000036938 Try5 1810049H19Rik|Tc|Tesp4 - 6|6 B1 trypsin 5 protein-coding 381148 Mm.297784 NM_001270646 ENSMUSG00000073600 Prob1 Gm1614 - 18|18 B2 proline rich basic protein 1 protein-coding 100041333 Gm3275 - - 14|14 A1 predicted gene 3275 pseudo 75310 Mm.108627 NR_040506 4930556C24Rik - - 16|16 C3.3 RIKEN cDNA 4930556C24 gene ncRNA 108168412 XR_001782667 Gm46651 - - 19 C3|19 predicted gene, 46651 ncRNA 62974 D15Mit242 - - 15 45.1 cM DNA Segment, Chr 15, Massachusetts Institute of Technology 242 unknown 102465570 NR_105910 ENSMUSG00000099096 Mir6945 Gm27779|mmu-mir-6945 - 13|13 B1 microRNA 6945 ncRNA 105243249 XR_879085 Gm39221 - - 8 C4|8 predicted gene, 39221 ncRNA 12458 Mm.8007 NM_009835 ENSMUSG00000040899 Ccr6 CC-CKR-6|CCR-6|Cmkbr6|KY411 - 17|17 A1 chemokine (C-C motif) receptor 6 protein-coding 105301 Mm.395132 AU042410 - - - expressed sequence AU042410 protein-coding 319665 Mm.275995 NM_176975 A430010J10Rik - - 6|6 C1 RIKEN cDNA A430010J10 gene unknown 108167428 XR_001778126 Gm45986 - - 7 B4|7 predicted gene, 45986 ncRNA 20147 Mm.41982 NM_011302 ENSMUSG00000031293 Rs1 Rs1h|Xlrs1|tmgc1 - X F4|X 73.95 cM retinoschisis (X-linked, juvenile) 1 (human) protein-coding 670603 Gm9496 - - 1|1 C1.1 mesoderm induction early response 1, family member 3 pseudogene pseudo 100039139 Mm.455610 NM_001166063 ENSMUSG00000091119 Ccdc152 - - 15|15 A1 coiled-coil domain containing 152 protein-coding 217517 Mm.285400 NM_144552 ENSMUSG00000046314 Stxbp6 BC024598|C85317 - 12|12 B2-B3 syntaxin binding protein 6 (amisyn) protein-coding 102466839 NR_106110 ENSMUSG00000105010 Mir219b mmu-mir-219b - 2|2 B microRNA 219b ncRNA 105245575 Gm41015 - - 13|13 predicted gene, 41015 ncRNA 62729 D19Mit103 - - 19 48.46 cM DNA segment, Chr 19, Massachusetts Institute of Technology 103 unknown 116862 Prdt2 - - 2 60.43 cM prion disease incubation time 2 unknown 61261 D2Mit157 - - 2 31.66 cM DNA segment, Chr 2, Massachusetts Institute of Technology 157 unknown 319173 Mm.377878 NM_175661 ENSMUSG00000061991 Hist1h2af H2a-221 - 13|13 A3.1 histone cluster 1, H2af protein-coding 66298 Mm.482941 NM_183253 ENSMUSG00000074447 Defa21 2010016B13Rik|Defcr21 - 8|8 A2 defensin, alpha, 21 protein-coding 108168069 XR_001780873 Gm46404 - - 13 A3.1|13 predicted gene, 46404 ncRNA 73998 Mm.191892 NM_028705 ENSMUSG00000029804 Herc3 5730409F18Rik|AI646603|mKIAA0032 - 6|6 B3 hect domain and RLD 3 protein-coding 619305 Mm.483405 NM_001033809 4930588K23Rik - - 16|16 A3 RIKEN cDNA 4930588K23 gene unknown 331535 Mm.211704 NM_177920 ENSMUSG00000031271 Serpina7 C730040N12Rik|Tbg - X|X F1 serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7 protein-coding 105243925 Mm.441581 Gm28777 - - 1|1 predicted gene 28777 ncRNA 114283 Manh16 QTL-SH11.2 - - mandible shape 16 unknown 18014 Mm.266665 NM_010896 ENSMUSG00000048904 Neurog1 AKA|Math4C|Neurod3|bHLHa6|ngn1 - 13 B1|13 30.06 cM neurogenin 1 protein-coding 258541 Mm.223078 NM_146548 ENSMUSG00000108114 Olfr800 MOR114-7 - 10|10 D3 olfactory receptor 800 protein-coding 258915 Mm.223321 NM_146913 ENSMUSG00000093877 Olfr1348 MOR103-9 - 7|7 A1 olfactory receptor 1348 protein-coding 100534346 Gm21037 - - 7|7 B4 predicted gene, 21037 pseudo 21339 Mm.383556 NM_021466 ENSMUSG00000072258 Taf1a TAFI48|mTAFI48 - 1|1 H5 TATA-box binding protein associated factor, RNA polymerase I, A protein-coding 105245737 XM_017316271 LOC105245737 - - 14 B disks large homolog 5-like protein-coding 18770 Mm.383180 NM_013631 ENSMUSG00000041237 Pklr Pk-1|Pk1|R-PK - 3 F1|3 39.01 cM pyruvate kinase liver and red blood cell protein-coding 20782 Srcs2 - - - v-src suppressed transcript 2 protein-coding 100041686 NM_001111116 Gm15427 - - 1|1 D predicted pseudogene 15427 pseudo 67891 Mm.280083 NM_024212 ENSMUSG00000032399 Rpl4 2010004J23Rik - 9|9 C ribosomal protein L4 protein-coding 27742 D2Dcr20 - - - DNA segment, Chr 2, Derry C. Roopenian 20 unknown 670467 Gm9487 - - 9 F3|9 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100534324 Gm21029 - - 13|13 B3 predicted gene, 21029 pseudo 100035401 Sttr2 - - - startle response 2 unknown 114566 Mm.458432 NM_053249 ENSMUSG00000049548 Krt82 Krt2-20 - 15 F2|15 56.9 cM keratin 82 protein-coding 67298 Mm.271980 NM_026081 ENSMUSG00000043384 Gprasp1 2210415K24Rik|3110031O14Rik|C87852|GASP|GASP1 - X|X F1 G protein-coupled receptor associated sorting protein 1 protein-coding 735264 NR_030423 ENSMUSG00000076387 Mir671 Mirn671|mmu-mir-671 - 5 A3|5 microRNA 671 ncRNA 68352 Mm.88478 NM_026690 ENSMUSG00000038704 Aspdh 0610012D14Rik - 7|7 B3 aspartate dehydrogenase domain containing protein-coding 12265 Mm.249560 NM_007575 ENSMUSG00000022504 Ciita C2ta|EG669998|Gm9475|Mhc2ta - 16|16 A1 class II transactivator protein-coding 108168040 LOC108168040 - - 13 A5 uncharacterized LOC108168040 pseudo 257960 Olfr210-ps1 MOR115-3P - 6|6 C1 olfactory receptor 210, pseudogene 1 pseudo 101056181 Gm29792 - - 8|8 predicted gene, 29792 pseudo 102640093 Mm.385825 NR_155425 ENSMUSG00000116402 Gm36246 - - 15 F3|15 predicted gene, 36246 ncRNA 76413 Mm.440041 NM_024271 ENSMUSG00000031509 1700016D06Rik - - 8|8 A1.1 RIKEN cDNA 1700016D06 gene protein-coding 433688 Gm11836 - - 4|4 A1 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle pseudogene pseudo 100035182 Ath25 - - - atherosclerosis 25 unknown 105242936 XR_882068 Gm39008 - - 7 B3|7 predicted gene, 39008 ncRNA 69918 Mm.440400 NR_038154 2610020C07Rik - - 16|16 A1 RIKEN cDNA 2610020C07 gene ncRNA 68433 1010001I08Rik - - - RIKEN cDNA 1010001I08 gene unknown 100416006 Gm17866 - - X|X A3.1 predicted gene, 17866 pseudo 231605 Mm.275748 NM_198306 ENSMUSG00000033316 Galnt9 GalNAc-T9 - 5|5 F polypeptide N-acetylgalactosaminyltransferase 9 protein-coding 100035279 Pmncq1 - - 12 15.54 cM polymorphonuclear cell concentration QTL 1 unknown 102638914 XR_383412 Gm35360 - - 14 C1|14 predicted gene, 35360 ncRNA 105245206 XR_871828 Gm40691 - - 10 B5.3|10 predicted gene, 40691 ncRNA 434123 Obox8 EG434123|Gm5585 - 7|7 A1 oocyte specific homeobox 8 protein-coding 52733 D2Wsu32e - - - DNA segment, Chr 2, Wayne State University 32, expressed unknown 100503167 Mm.265892 NR_040370 Gm13752 - - 2 C3|2 48.12 cM predicted gene 13752 ncRNA 381819 Mm.156682 NM_001142969 ENSMUSG00000067541 A630073D07Rik Gm1688 - 6|6 G1 RIKEN cDNA A630073D07 gene protein-coding 102639210 Gm35570 - - 5 E1|5 predicted gene, 35570 pseudo 100322896 Mm.479821 NM_001170705 ENSMUSG00000090326 Dthd1 Gm17384 - 5 C3.1|5 32.04 cM death domain containing 1 protein-coding 242377 Mm.372465 NM_001034867 ENSMUSG00000054659 Pm20d2 Acy1l2|Gm424 - 4|4 A5 peptidase M20 domain containing 2 protein-coding 66422 Mm.29898 NM_023203 ENSMUSG00000042462 Dctpp1 2410015N17Rik|AI854235|RS21-C6 - 7|7 F3 dCTP pyrophosphatase 1 protein-coding 105243547 XR_871308 Gm39438 - - 9 F3|9 predicted gene, 39438 ncRNA 105244655 XR_868014 Gm40227 - - 4 C7|4 predicted gene, 40227 ncRNA 102632673 Mm.122260 XR_387131 ENSMUSG00000087587 Gm15245 - - X F5|X 79.08 cM predicted gene 15245 ncRNA 667639 Olfr621-ps1 EG667639|MOR4-3P|MOR4-4_p - 7|7 E3 olfactory receptor 621, pseudogene 1 pseudo 108169006 LOC108169006 - - 4 E1 PRAME family member 12-like pseudo 22223 Mm.29807 NM_011670 ENSMUSG00000029223 Uchl1 AW822034|C88048|PGP 9.5|PGP9.5|R75593|UCH-L1|UCHL-1|gad - 5 C3.1|5 35.95 cM ubiquitin carboxy-terminal hydrolase L1 protein-coding 100504937 LOC100504937 - - 4|4 acetylserotonin O-methyltransferase pseudogene pseudo 73447 Mm.284162 NM_026137 ENSMUSG00000031166 Wdr13 1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21 - X A1.1|X 3.67 cM WD repeat domain 13 protein-coding 71514 Mm.257276 NM_023603 ENSMUSG00000028820 Sfpq 1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1 - 4 D2.2|4 61.2 cM splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) protein-coding 12534 Mm.281367 NM_007659 ENSMUSG00000019942 Cdk1 Cdc2|Cdc2a|p34 - 10 B5.3|10 36.07 cM cyclin-dependent kinase 1 protein-coding 666285 Gm8024 EG666285 - 14|14 B predicted gene 8024 protein-coding 102640968 XR_373963 Gm36906 - - 2 A1|2 predicted gene, 36906 ncRNA 105245390 Gm40854 - - 12|12 predicted gene, 40854 ncRNA 629742 Gm7001 EG629742 - 10|10 B4 CDK5 regulatory subunit associated protein 3 pseudogene pseudo 102640180 XR_876360 Gm36309 - - 17 A1|17 predicted gene, 36309 ncRNA 22394 wh - - - writher unknown 626390 XM_017321252 Gm6673 EG626390 - 5|5 A3 predicted gene 6673 protein-coding 60953 DXMit79 - - X 53.17 cM DNA segment, Chr X, Massachusetts Institute of Technology 79 unknown 224762 Mm.213417 NM_146077 ENSMUSG00000058063 Trim31 BC026666|HCG1|HCGI|RNF - 17|17 B1 tripartite motif-containing 31 protein-coding 112163565 Mm.459013 AA636326 - - - expressed sequence AA636326 protein-coding 102635069 XR_383664 Gm32498 - - 14 D3|14 predicted gene, 32498 ncRNA 19118 Mm.42733 NM_013637 ENSMUSG00000022501 Prm1 Prm-1 - 16 A1|16 5.87 cM protamine 1 protein-coding 619788 Mm.469847 NM_001104581 ENSMUSG00000091407 Vmn2r117 EG619788|V2Rp6 - 17|17 A3.3 vomeronasal 2, receptor 117 protein-coding 56738 Mm.22256 NM_020042 ENSMUSG00000064120 Mocs1 3110045D15Rik|AI043170|AW536397 - 17|17 C molybdenum cofactor synthesis 1 protein-coding 353326 Mm.23062 NM_184109 ENSMUSG00000085925 Rtl1 6430411K18Rik|Mar|Mart1|Mor1|Peg11 - 12|12 F1 retrotransposon Gaglike 1 protein-coding 108168976 XR_001784423 LOC108168976 - - 4 D2.2 uncharacterized LOC108168976 ncRNA 100040233 Mm.297485 NM_001103153 ENSMUSG00000071517 Gm10334 - - 6|6 B1 predicted gene 10334 protein-coding 100418015 Gm2999 100040847 - 15|15 D3 eukaryotic translation initiation factor 4A2 pseudogene pseudo 102632482 XR_391285 Gm30544 - - 7 B2|7 predicted gene, 30544 ncRNA 62782 D16Mit133 - - 16 18.04 cM DNA segment, Chr 16, Massachusetts Institute of Technology 133 unknown 654460 Mm.389000 NM_001039123 ENSMUSG00000073735 Defb18 BD-18|EG654460|mBD-18 - 1 A3|1 defensin beta 18 protein-coding 108168397 Mm.329473 XM_017318028 Gm46637 - - 18 E1|18 predicted gene, 46637 protein-coding 546897 Gm5990 EG546897 - 6|6 B2.1 golgi associated, gamma adaptin ear containing, ARF binding protein 2 pseudogene pseudo 58240 Mm.309954 NM_021429 ENSMUSG00000020605 Hs1bp3 - - 12|12 A1.1 HCLS1 binding protein 3 protein-coding 116852 Mm.37605 NM_054080 ENSMUSG00000054757 Akr1c20 2610528B18Rik - 13|13 A1 aldo-keto reductase family 1, member C20 protein-coding 58242 Mm.41198 NM_021431 ENSMUSG00000073295 Nudt11 DIPP3|DIPP3b - X|X A1.1 nudix (nucleoside diphosphate linked moiety X)-type motif 11 protein-coding 110813 Igk-V9-26 - - - immunoglobulin kappa chain variable 9-26 (V9-26) other 21371 Mm.379025 NM_009321 ENSMUSG00000042043 Tbca Tbca13 - 13|13 D1 tubulin cofactor A protein-coding 16697 Mm.482251 NR_026831 ENSMUSG00000069584 Gm10272 Krtap12-4 - 10 C1|10 39.72 cM keratin associated protein 12-4 pseudo 102636962 Gm33887 - - 1|1 predicted gene, 33887 ncRNA 117578 Char3 - - 17 17.98 cM P. chabaudi malaria resistance QTL 3 unknown 53802 D17Aus3II D17Au3II - - DNA segment, Chr 17, Austin-3II unknown 107506 Ldr2 Ldr-2 - - lactate dehydrogenase regulator 2 protein-coding 102637758 XR_381009 Gm34488 - - 11 A1|11 predicted gene, 34488 ncRNA 74301 Mm.442224 1700108N11Rik - - 2|2 RIKEN cDNA 1700108N11 gene unknown 380930 Mm.427836 NR_102319 ENSMUSG00000115149 9330188P03Rik Gm1589|mgt-6 - 14|14 E2.3 RIKEN cDNA 9330188P03 gene ncRNA 102631926 XR_388984 Gm30134 - - 11 D|11 predicted gene, 30134 ncRNA 105242571 XR_868694 Gm38745 - - 5 G3|5 predicted gene, 38745 ncRNA 100504479 Gm13450 - - 2 B|2 23.18 cM mitochondrial import receptor subunit TOM7 homolog pseudo 68265 Mm.141451 NM_026645 ENSMUSG00000023577 Iqcf3 1700012F17Rik|AV040440 - 9|9 F1 IQ motif containing F3 protein-coding 216864 Mm.222465 NM_145137 ENSMUSG00000040950 Mgl2 CD301b - 11|11 B3 macrophage galactose N-acetyl-galactosamine specific lectin 2 protein-coding 62176 D14Mit95 - - 14 57.2 cM DNA segment, Chr 14, Massachusetts Institute of Technology 95 unknown 627045 Gm6730 EG627045 - X|X F5 S-adenosylhomocysteine hydrolase pseudogene pseudo 110321 Jckm2 - - 1 57.91 cM juvenile cystic kidney modifier 2 protein-coding 61308 D3Mit121 - - 3 32.59 cM DNA segment, Chr 3, Massachusetts Institute of Technology 121 unknown 102467240 n-TAtgc2 n-Ta31 - X F1|X nuclear encoded tRNA alanine 2 (anticodon TGC) tRNA 67116 Mm.218848 NM_024192 ENSMUSG00000036748 Cuedc2 3010002G01Rik - 19|19 C3 CUE domain containing 2 protein-coding 11812 Mm.182440 NM_007469 ENSMUSG00000040564 Apoc1 Apo-CIB|ApoC-IB|apo-CI|apoC-I - 7 A3|7 9.94 cM apolipoprotein C-I protein-coding 109356 Mm.204831 9530053P14Rik - - 4|4 RIKEN cDNA 9530053P14 gene protein-coding 105244881 XR_869515 Gm40409 - - 6 G1|6 predicted gene, 40409 ncRNA 114642 Mm.182836 NM_054054 ENSMUSG00000029279 Brdt 7420412D09Rik|Brd6|Fsrg3 - 5|5 E5 bromodomain, testis-specific protein-coding 102640976 XR_375364 Gm36911 - - 2 H3|2 predicted gene, 36911 ncRNA 105246144 XR_876186 Gm41480 - - 16 C3.3|16 predicted gene, 41480 ncRNA 225923 Mm.297596 NM_001033283 ENSMUSG00000055933 Oosp3 Gm97 - 19|19 A oocyte secreted protein 3 protein-coding 492891 Cd8mts4 - - 11 78.74 cM CD8 memory T cell subset 4 unknown 404319 Mm.377276 NM_207558 ENSMUSG00000035932 Olfr750 GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18 - 14|14 C1 olfactory receptor 750 protein-coding 238074 Gm4928 EG238074 - 12|12 A1.1 predicted gene 4928 pseudo 667280 Hmgb1-ps8 EG667280|Gm8554|Hmg-1RV-A|Hmg1-rs2|Hmgb1-rs2 - 10|10 A3 high mobility group box 1, pseudogene 8 pseudo 100861738 Mm.486637 LOC100861738 - - - eukaryotic translation elongation factor 2 pseudogene pseudo 105246400 XR_877306 Gm41692 - - 18 B2|18 predicted gene, 41692 ncRNA 404571 AL118313 - - - expressed sequence AL118313 unknown 102638150 LOC102638150 - - 12 C3 non-histone chromosomal protein HMG-14 pseudogene pseudo 434156 Mm.118535 NM_001177427 ENSMUSG00000070705 Eid2b 3010005C08Rik - 7|7 A3 EP300 interacting inhibitor of differentiation 2B protein-coding 102634260 Gm28423 - - Y|Y predicted gene 28423 protein-coding 100155 Mm.331636 NM_001033200 ENSMUSG00000038598 AI481877 Gm426 - 4|4 B3 expressed sequence AI481877 protein-coding 60409 Mm.29814 NM_021789 ENSMUSG00000032112 Trappc4 1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23 - 9|9 A5.2 trafficking protein particle complex 4 protein-coding 631906 Gm7075 EG631906 - 10|10 B4 ring finger protein 7 pseudogene pseudo 20463 Mm.30072 NM_009187 ENSMUSG00000024248 Cox7a2l COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81 - 17|17 E4 cytochrome c oxidase subunit VIIa polypeptide 2-like protein-coding 102637229 XR_373579 Gm34098 - - 1 C5|1 predicted gene, 34098 ncRNA 102634043 XR_389144 Gm31724 - - 11 E2|11 predicted gene, 31724 ncRNA 14254 Mm.389712 NM_010228 ENSMUSG00000029648 Flt1 AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1 - 5 G3|5 87.01 cM FMS-like tyrosine kinase 1 protein-coding 73047 Mm.425977 NM_028420 ENSMUSG00000051146 Camk2n2 2900075A18Rik - 16|16 B1 calcium/calmodulin-dependent protein kinase II inhibitor 2 protein-coding 114279 Manh12 QTL-SH9.2 - - mandible shape 12 unknown 105243942 XR_865478 Gm29083 - - 1 C2|1 predicted gene 29083 ncRNA 111728 Iapt10 - - - intracisternal A particle, tumor specific 10 other 22433 Mm.469937 NM_013842 ENSMUSG00000020484 Xbp1 D11Ertd39e|TREB-5|TREB5|XBP-1 - 11 A1|11 3.61 cM X-box binding protein 1 protein-coding 636532 Gm12125 - - 11|11 A4 predicted gene 12125 pseudo 100048975 Wtmq5 mQTL10b - - weight module QTL 5 unknown 100463511 Gm19259 - - 14 C1|14 26.74 cM chaperonin containing Tcp1, subunit 6a (zeta) pseudogene pseudo 67929 Mm.60688 NM_026459 ENSMUSG00000017049 Ccdc70 1700112P19Rik - 8|8 A2 coiled-coil domain containing 70 protein-coding 13295 Del(17)1t-d Del(17)1t - - deletion, Chr 17, t 1, distal other 105246093 Gm41437 - - 16|16 predicted gene, 41437 ncRNA 359849 DXMgc96 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 96 unknown 100861690 Gm21139 - - Y A1|Y predicted gene, 21139 pseudo 100417706 Gm14841 - - X|X D nicotinamide phosphoribosyltransferase pseudogene pseudo 105244359 XR_866963 Gm14268 - - 2 H3|2 86.72 cM predicted gene 14268 ncRNA 667749 Gm8792 EG667749 - X|X B hepatoma-derived growth factor pseudogene pseudo 16345 Eif3s6-ps4 Int6-ps4 - 6 A2|6 eukaryotic translation initiation factor 3, subunit 6, pseudogene 4 pseudo 105243291 XR_879202 Gm39253 - - 8 E1|8 predicted gene, 39253 ncRNA 102635311 XR_374913 Gm32684 - - 2 E5|2 predicted gene, 32684 ncRNA 80695 Del(7)Tyr-p 23DVT|Del(7)Tyr 23DVT-p - - deletion, Chr 7, Tyr c-23DVT, proximal other 18196 Mm.7414 NM_010942 ENSMUSG00000029126 Nsg1 Neep21|m234|p21 - 5 B3|5 20.21 cM neuron specific gene family member 1 protein-coding 107239 Mm.482310 NM_134148 ENSMUSG00000075289 Carns1 AI790298|Atpgd1|mKIAA1394 - 19|19 A carnosine synthase 1 protein-coding 668561 Gm9244 EG668561 - 7|7 B3 predicted gene 9244 pseudo 638533 Gm7242 EG638533 - 12 B1|12 serine (or cysteine) peptidase inhibitor, clade B, member 9b pseudogene pseudo 101056171 Gm29789 - - 8 A1.3|8 predicted gene, 29789 pseudo 12505 Mm.423621 NM_009851 ENSMUSG00000005087 Cd44 AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1 - 2 E2|2 54.13 cM CD44 antigen protein-coding 102467534 n-TGgcc13 n-Tg18 - 1 H3|1 nuclear encoded tRNA glycine 13 (anticodon GCC) tRNA 653029 Mm.399816 Arhgap27os2 D630048o14rik|Gm11647 - 11|11 E1 Rho GTPase activating protein 27, opposite strand 2 protein-coding 108167459 XR_001778287 Gm46000 - - 7 F3|7 predicted gene, 46000 ncRNA 233040 Mm.116116 NM_207238 ENSMUSG00000037463 Fbxo27 E130008B10Rik|FBG5|Gm161 - 7|7 B1 F-box protein 27 protein-coding 242805 Mm.483837 XM_017320566 ENSMUSG00000078487 Ankrd65 E230028L10Rik|Gm439|Gm45 - 4|4 E2 ankyrin repeat domain 65 protein-coding 492841 Elnt - - 1 80.13 cM escape latencies during navigation task unknown 74192 Mm.38155 NM_028809 ENSMUSG00000026755 Arpc5l 2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746 - 2|2 B actin related protein 2/3 complex, subunit 5-like protein-coding 74604 Mm.483036 4833417J20Rik - - 19|19 RIKEN cDNA 4833417J20 gene protein-coding 62097 D11Mit72 - - 11 2.94 cM DNA segment, Chr 11, Massachusetts Institute of Technology 72 unknown 105246312 Gm41614 - - 17|17 predicted gene, 41614 ncRNA 103981 Es15 Es-15 - - esterase 15 protein-coding 110594 Tcra-V23.1 - - - T cell receptor alpha, variable 23.1 other 64406 Mm.423397 NM_022435 ENSMUSG00000075304 Sp5 - - 2 C2|2 41.49 cM trans-acting transcription factor 5 protein-coding 60753 D2Mit34 - - 2 34.89 cM DNA segment, Chr 2, Massachusetts Institute of Technology 34 unknown 219114 Mm.30173 NM_198605 ENSMUSG00000021965 Ska3 F630043A04Rik - 14|14 C3 spindle and kinetochore associated complex subunit 3 protein-coding 232944 Mm.260504 NM_172279 ENSMUSG00000030397 Mark4 2410090P21Rik|C79806|Markl1 - 7|7 A3 MAP/microtubule affinity regulating kinase 4 protein-coding 100048019 Gm16958 - - 3|3 predicted gene, 16958 ncRNA 110503 Tcra-V1.3 - - - T cell receptor alpha, variable 1.3 other 327812 Mm.191660 NR_038032 ENSMUSG00000085282 Gm15663 9330159K06 - 10|10 D1 predicted gene 15663 ncRNA 102633445 XR_872619 Gm31269 - - 12 A2|12 predicted gene, 31269 ncRNA 112381 Eae3 - - 3 41.93 cM experimental allergic encephalomyelitis susceptibility 3 unknown 61825 D2Mit338 - - 2 63.26 cM DNA segment, Chr 2, Massachusetts Institute of Technology 338 unknown 108168580 XM_017318784 LOC108168580 - - Y D Y-linked testis-specific protein 1-like protein-coding 102640733 Gm28204 - - Y|Y predicted gene 28204 ncRNA 16414 Mm.1137 NM_008404 ENSMUSG00000000290 Itgb2 2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17 - 10 C1|10 39.72 cM integrin beta 2 protein-coding 21869 Mm.89972 NM_009385 ENSMUSG00000001496 Nkx2-1 AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1 - 12 C1|12 24.42 cM NK2 homeobox 1 protein-coding 108168046 Gm46387 - - 13 C1|13 nucleoside diphosphate kinase A pseudogene pseudo 71184 Mm.473974 Usp46os2 1700112M01Rik|4933411J23Rik|Gm15805 - 5|5 ubiquitin specific peptidase 46, opposite strand 2 unknown 622032 Mm.474428 NM_001101562 ENSMUSG00000090715 Vmn1r167 EG622032|Gm6279 - 7|7 A3 vomeronasal 1 receptor 167 protein-coding 108150 Mm.62886 NM_144731 ENSMUSG00000031608 Galnt7 AI225872 - 8|8 B2 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 100526490 NR_130338 ENSMUSG00000094261 Mir466b-6 mmu-mir-466b-6 - 2 A1|2 8.22 cM microRNA 466b-6 ncRNA 69818 Mm.437204 1810059C17Rik - - 2|2 RIKEN cDNA 1810059C17 gene ncRNA 102632215 Gm28295 - - Y|Y predicted gene 28295 ncRNA 22594 Mm.4347 NM_009532 ENSMUSG00000051768 Xrcc1 Xrcc-1 - 7 A3|7 11.42 cM X-ray repair complementing defective repair in Chinese hamster cells 1 protein-coding 257685 GA_x5J8B7W5P47-106198-105851 - - - olfactory receptor GA_x5J8B7W5P47-106198-105851 protein-coding 61914 D4Mit297 - - - DNA Segment, Chr 4, Massachusetts Institute of Technology 297 unknown 102640161 Gm28349 - - Y|Y predicted gene 28349 ncRNA 100041054 XM_017316311 ENSMUSG00000091022 Gm3115 - - 14 A1|14 predicted gene 3115 protein-coding 102638768 XR_389388 Gm35253 - - 5 E4|5 predicted gene, 35253 ncRNA 320930 Mm.447522 B930028L11Rik - - 2|2 RIKEN cDNA B930028L11 gene protein-coding 22441 Mm.379041 NM_011725 ENSMUSG00000054626 Xlr - - X|X A5 X-linked lymphocyte-regulated protein-coding 102323 Mm.368890 NM_001024504 ENSMUSG00000038506 Dcun1d2 AW495713|mFLJ10704 - 8|8 A1.1 DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae) protein-coding 110860 Cdc42l3 - - - cell division cycle 42 homolog (S. cerevisiae)-like 3 protein-coding 100038429 Mm.420778 XR_385496 Gm10505 - - 17 A3.3|17 predicted gene 10505 unknown 17194 Mm.281805 NM_010775 ENSMUSG00000037780 Mbl1 MBL-A|MBP-A|S-MBP - 14 B|14 22.36 cM mannose-binding lectin (protein A) 1 protein-coding 102636409 XR_381241 Gm33483 - - 12 A1.1|12 predicted gene, 33483 ncRNA 71584 Mm.283495 NM_023608 ENSMUSG00000019359 Gdpd2 9130017L10Rik|Gde3|Obdpf - X|X C3 glycerophosphodiester phosphodiesterase domain containing 2 protein-coding 100217425 NR_028525 Snord45c MBII-401 - 3 H3|3 small nucleolar RNA, C/D box 45C snoRNA 100502898 Mm.484609 Gm19440 - - 5|5 3.39 cM predicted gene, 19440 unknown 100093651 Trnas-gga - - - transfer RNA serine (anticodon GGA) tRNA 100418084 Gm18990 - - 13|13 C1 ATPase, H+ transporting, lysosomal V1 subunit A pseudogene pseudo 100126796 Erk-50 - - - 50-kDa ERK-like protein protein-coding 102633950 Mm.356554 NR_152731 ENSMUSG00000097104 Gm26579 - - 10 D2|10 predicted gene, 26579 ncRNA 387351 Mm.377912 NM_207026 ENSMUSG00000060412 Tas2r124 T2R24|Tas2r24|mGR24|mt2r50 - 6 G1|6 64.03 cM taste receptor, type 2, member 124 protein-coding 100039945 NM_001099317 Gm12184 - - 11 B1.2|11 CDK2 (cyclin-dependent kinase 2)-associated protein 1 pseudogene pseudo 66523 Mm.436864 NM_025615 ENSMUSG00000031984 2810004N23Rik 3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55 - 8|8 E2 RIKEN cDNA 2810004N23 gene protein-coding 78893 Mm.283708 NM_153585 ENSMUSG00000056167 Cnot10 2600001P13Rik - 9|9 F3 CCR4-NOT transcription complex, subunit 10 protein-coding 100039121 Gm2053 - - 1|1 A1 transforming, acidic coiled-coil containing protein 3 pseudogene pseudo 383801 Rpl23a-ps4 Gm14096 - 2|2 F2 ribosomal protein L23A, pseudogene 4 pseudo 100036092 Bntq14 - - - bone traits QTL 14 unknown 61742 D4Mit274 - - 4 29.25 cM DNA segment, Chr 4, Massachusetts Institute of Technology 274 unknown 100628593 NR_039586 ENSMUSG00000092981 Mir5125 mmu-mir-5125|mu-mir-5125 - 17 A3.3|17 12.08 cM microRNA 5125 ncRNA 100124390 Traj13 Gm16660 - 14|14 C2 T cell receptor alpha joining 13 other 66264 Mm.383215 NM_025455 ENSMUSG00000028795 Ccdc28b 1110002E08Rik|1810010N17Rik - 4|4 D2.2 coiled coil domain containing 28B protein-coding 53883 Mm.39728 NM_017392 ENSMUSG00000068740 Celsr2 Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1 - 3 F3|3 47.02 cM cadherin, EGF LAG seven-pass G-type receptor 2 protein-coding 232313 Mm.272037 NM_198612 ENSMUSG00000030074 Gxylt2 Glt8d4|Gm152 - 6|6 D3 glucoside xylosyltransferase 2 protein-coding 102639674 XR_388158 Gm35930 - - 8 E1|8 predicted gene, 35930 ncRNA 100416413 Gm18102 - - 9|9 B ribosomal protein L13 pseudogene pseudo 546519 Mm.385578 NM_001085535 ENSMUSG00000070330 Tmem235 Cldn27|Gm12581 - 11|11 E2 transmembrane protein 235 protein-coding 667104 Gm8458 EG667104 - 5|5 G3 NSA2 ribosome biogenesis homolog pseudogene pseudo 12530 Mm.307103 NM_007658 ENSMUSG00000032477 Cdc25a D9Ertd393e - 9 F2|9 59.81 cM cell division cycle 25A protein-coding 61292 D2Mit284 - - 2 75.41 cM DNA segment, Chr 2, Massachusetts Institute of Technology 284 unknown 434166 Gm5589 - - 4 D3|4 predicted gene 5589 unknown 102467415 n-TLaag4 n-Tl4 - 7 F2|7 nuclear encoded tRNA leucine 4 (anticodon AAG) tRNA 72435 Mm.440480 2310065H11Rik - - - RIKEN cDNA 2310065H11 gene protein-coding 100038600 Mm.483549 NR_033524 Gm11529 - - 11 D|11 predicted gene 11529 ncRNA 61614 D9Mit215 - - 9 68.38 cM DNA segment, Chr 9, Massachusetts Institute of Technology 215 unknown 108297 Ptv1 Ptv-1 - - polytropic virus 1 other 62804 D14Mit212 - - 14 22.29 cM DNA segment, Chr 14, Massachusetts Institute of Technology 212 unknown 212518 Mm.246858 NM_183147 ENSMUSG00000045733 Sprn C630041J07 - 7|7 F4 shadow of prion protein protein-coding 19935 Mm.12144 NM_011288 ENSMUSG00000037772 Mrpl23 L23mrp|Rpl23|Rpl23l - 7 F5|7 87.95 cM mitochondrial ribosomal protein L23 protein-coding 229333 Mm.75765 NM_177661 ENSMUSG00000036951 C130079G13Rik - - 3|3 D RIKEN cDNA C130079G13 gene protein-coding 245944 Mm.170103 NM_139061 ENSMUSG00000020128 Vps54 Hcc8|Vps54l|mSLP8|wr - 11 A3.1|11 13.89 cM VPS54 GARP complex subunit protein-coding 16222 In(1)23Rk In23Rk - - inversion, Chr 1, Roderick 23 other 102632324 XR_386995 Gm30427 - - X C3|X predicted gene, 30427 ncRNA 102641725 XR_868176 Gm38571 - - 4 D2.2|4 predicted gene, 38571 ncRNA 61047 D9Mit251 - - 9 2.46 cM DNA segment, Chr 9, Massachusetts Institute of Technology 251 unknown 99094 Mm.443731 AI849538 - - - expressed sequence AI849538 protein-coding 258903 Mm.377743 NM_146901 ENSMUSG00000101391 Olfr1217 MOR233-4 - 2|2 E1 olfactory receptor 1217 protein-coding 102633655 LOC102633655 - - 1 C1.1 mitochondrial import receptor subunit TOM5 homolog pseudo 100126459 Trav16n Gm16837 - 14|14 C2 T cell receptor alpha variable 16n other 102636007 XR_378031 Gm33202 - - 6 F3|6 predicted gene, 33202 ncRNA 735255 NR_030469 ENSMUSG00000076126 Mir669b Mirn669b - 2 A1|2 microRNA 669b ncRNA 72748 Mm.41506 NM_024257 ENSMUSG00000038422 Hdhd3 2810435D12Rik - 4|4 B3 haloacid dehalogenase-like hydrolase domain containing 3 protein-coding 102465182 NR_105773 ENSMUSG00000098287 Mir6355 Gm27473|mmu-mir-6355 - 18|18 D3 microRNA 6355 ncRNA 102640377 XR_378468 Gm36449 - - 7 F2|7 predicted gene, 36449 ncRNA 667691 Gm14747 EG667691 - X B|X predicted gene 14747 pseudo 320083 Mm.304296 NM_177070 ENSMUSG00000074062 Fbxw16 7420402K12Rik - 9|9 F2 F-box and WD-40 domain protein 16 protein-coding 100502666 Gm19311 - - 14 D3|14 43.04 cM ATP synthase subunit d, mitochondrial-like pseudo 102635159 Mm.244807 Gm32568 - - 8|8 predicted gene, 32568 ncRNA 626959 XR_001780236 Gm12292 - - 11|11 B3 predicted gene 12292 unknown 320135 Mm.386899 NM_178776 ENSMUSG00000047515 BC049715 - - 6|6 G1 cDNA sequence BC049715 protein-coding 60707 D4Mit98 - - 4 8.88 cM DNA segment, Chr 4, Massachusetts Institute of Technology 98 unknown 105245458 XR_873224 Gm40908 - - 13 A3.3|13 predicted gene, 40908 ncRNA 100036216 Pcyts3 - - 11 52.22 cM plasmacytoma susceptibility 3 unknown 27681 Mm.372235 NM_033568 ENSMUSG00000006058 Snf8 D11Moh34 - 11 D|11 59.24 cM SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) protein-coding 61940 D6Mit309 - - 6 14.75 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 309 unknown 17268 Mm.356578 NM_010789 ENSMUSG00000020160 Meis1 C530044H18Rik|Evi8 - 11 A3.1|11 11.11 cM Meis homeobox 1 protein-coding 108167535 Gm45734 - - 8 B3.3|8 predicted gene 45734 pseudo 102466790 NR_105996 ENSMUSG00000099047 Mir7029 Gm27293|mmu-mir-7029 - 5|5 F microRNA 7029 ncRNA 14211 Mm.2999 NM_008017 ENSMUSG00000028312 Smc2 5730502P04Rik|AI255214|AW545314|CAP-E|CAPE|Fin16|SMC-2|Smc2l1 - 4 B2|4 28.31 cM structural maintenance of chromosomes 2 protein-coding 666196 Gm7973 EG666196 - X|X F1 predicted gene 7973 pseudo 102636154 Mm.466829 XR_379388 ENSMUSG00000086914 Gm16124 - - 9 A5.3|9 29.12 cM predicted gene 16124 ncRNA 100418332 Gm19144 - - 12|12 C2 synaptotagmin binding, cytoplasmic RNA interacting protein pseudogene pseudo 667801 Gm8823 EG667801 - 3 A1|3 predicted gene 8823 pseudo 110120373 LOC110120373 - - - VISTA enhancer mm997 biological-region 102638784 XR_374739 Gm35266 - - 2 C3|2 predicted gene, 35266 ncRNA 111750 Ms13-19 Ms13-Hf3 - - minisatellite 13-19 detected by M13 phage probe other 102634493 Gm28827 - - Y|Y predicted gene 28827 protein-coding 98131 R75520 - - - expressed sequence R75520 unknown 108169139 XR_001785233 Gm46958 - - 6 B2.3|6 predicted gene, 46958 ncRNA 73782 Mm.437517 4930421P22Rik - - 9|9 RIKEN cDNA 4930421P22 gene protein-coding 27823 211N06R - - - DNA segment, 211N06R (Research Genetics) unknown 385523 Gm5403 EG385523 - X|X E3 F-box protein 21 pseudogene pseudo 19193 Mm.8543 NM_008952 ENSMUSG00000017453 Pipox LPIPOX|Pso - 11 B5|11 46.74 cM pipecolic acid oxidase protein-coding 112122 Bglq10 - - 13 42.19 cM body growth late QTL 10 unknown 19766 Mm.374799 NM_009068 ENSMUSG00000021408 Ripk1 D330015H01Rik|RIP|RIP-1|Rinp|Rip1 - 13 A3.3|13 14.01 cM receptor (TNFRSF)-interacting serine-threonine kinase 1 protein-coding 213989 Mm.34891 NM_145987 ENSMUSG00000043085 Tmem82 - - 4|4 D3 transmembrane protein 82 protein-coding 67709 Mm.46306 NM_026328 ENSMUSG00000027876 Reg4 2010002L15Rik|GISP|RELP - 3|3 F2.2 regenerating islet-derived family, member 4 protein-coding 108168567 XM_017318770 LOC108168567 - - Y E Y-linked testis-specific protein 1-like protein-coding 320971 Mm.487043 4832406H04Rik - - 10|10 RIKEN cDNA 4832406H04 gene protein-coding 667431 Vmn1r-ps78 EG667431|Gm8628 - 7|7 A3 vomeronasal 1 receptor, pseudogene 78 pseudo 100041347 Mm.300962 NR_045101 ENSMUSG00000087512 Gm11985 - - 11|11 A1 predicted gene 11985 ncRNA 433862 Gm5551 EG433862 - 5|5 B1 peptidylprolyl isomerase D (cyclophilin D) pseudogene pseudo 669130 Gm9442 - - 3 C|3 predicted gene 9442 pseudo 777681 Ighd3-1 Gm16967 - 12|12 F1 immunoglobulin heavy diversity 3-1 other 493158 Splq2 - - - spleen weight QTL 2 unknown 69542 Mm.265291 NM_175148 ENSMUSG00000039269 2300002M23Rik Stg|emprin - 17|17 B1 RIKEN cDNA 2300002M23 gene protein-coding 12237 Mm.927 NM_009774 ENSMUSG00000066979 Bub3 AU019800|AU021329|AU043350|AW146323|C78067 - 7 F3|7 74.36 cM BUB3 mitotic checkpoint protein protein-coding 170803 Cdcs2 - - 1 33.31 cM cytokine deficiency colitis susceptibility 2 unknown 387246 NR_029728 ENSMUSG00000065557 Mirlet7c-1 Mirnlet7c|Mirnlet7c-1|let-7c-1 - 16|16 C3.1 microRNA let7c-1 ncRNA 102636884 XR_880743 Gm33834 - - 3 A3|3 predicted gene, 33834 ncRNA 102636879 XR_389169 Gm33829 - - 11 E2|11 predicted gene, 33829 ncRNA 259122 Mm.377860 NM_147118 ENSMUSG00000094520 Olfr635 MOR5-2 - 7|7 E3 olfactory receptor 635 protein-coding 74757 Mm.159329 NR_045384 ENSMUSG00000106219 5830416I19Rik - - 5|5 C3.1 RIKEN cDNA 5830416I19 gene ncRNA 652988 Gm7324 EG652988|Rbmxrtp - 14|14 C1 Rbmxrt pseudogene pseudo 74654 Mm.410820 NR_040596 ENSMUSG00000080907 4930455H04Rik - - 3|3 G1 RIKEN cDNA 4930455H04 gene ncRNA 101202 Mm.206911 NM_178899 ENSMUSG00000044156 Hepacam2 AI987662 - 6|6 A1 HEPACAM family member 2 protein-coding 100040496 Gm2805 - - 16 C3.3|16 predicted gene 2805 pseudo 102633611 Gm31395 - - 14|14 predicted gene, 31395 ncRNA 108196 Pgk1-ps2 Pgk-1ps2 - - phosphoglycerate kinase 1, pseudogene 2 pseudo 666310 Gm8039 EG666310 - 6 B2.3|6 PRP18 pre-mRNA processing factor 18 homolog pseudogene pseudo 100416239 Gm17994 - - 8|8 B2 ribosomal protein S7 pseudogene pseudo 105246858 Gm42069 - - 11|11 predicted gene, 42069 ncRNA 13998 Mm.269596 NM_053072 ENSMUSG00000020021 Fgd6 AA123052|Etohd4|ZFYVE24 - 10|10 C2 FYVE, RhoGEF and PH domain containing 6 protein-coding 319916 Mm.441061 A730011C13Rik BB166060 - 3|3 RIKEN cDNA A730011C13 gene unknown 102634777 XR_865979 ENSMUSG00000084901 Gm13266 - - 2 A2|2 10.64 cM predicted gene 13266 ncRNA 100124441 NR_030562 ENSMUSG00000095782 Mir465c-1 Mirn465c-1 - X A7.1|X microRNA 465c-1 ncRNA 56406 Mm.27592 NM_019825 ENSMUSG00000038369 Ncoa6 AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181 - 2|2 H1 nuclear receptor coactivator 6 protein-coding 626578 Mm.275893 NM_001039646 ENSMUSG00000105096 Gbp10 - - 5|5 E5 guanylate-binding protein 10 protein-coding 257697 GA_x5J8B7TRQ0A-1229-891 - - - olfactory receptor GA_x5J8B7TRQ0A-1229-891 protein-coding 110489 Tcra-V4.2 - - - T cell receptor alpha, variable 4.2 other 102637048 XR_376561 Gm38492 - - 4 D1|4 predicted gene, 38492 ncRNA 52172 D4Ertd264e - - 4 67.31 cM DNA segment, Chr 4, ERATO Doi 264, expressed unknown 117161 Mm.378512 BB230421 - - - expressed sequence BB230421 unknown 385407 Gm5393 EG385407 - X|X E1 predicted pseudogene 5393 pseudo 102631892 Gm30112 - - 11|11 predicted gene, 30112 ncRNA 666043 Mm.247282 NR_003372 Gm7904 EG666043 - 9 A3|9 predicted gene 7904 pseudo 384486 Vmn2r-ps33 EG384486 - 6 F2|6 vomeronasal 2, receptor, pseudogene 33 pseudo 100417831 Mm.458429 NR_040456 ENSMUSG00000098934 Gm18853 - - 7|7 E3 GTPase, very large interferon inducible 1 pseudogene pseudo 100040890 Gm3025 - - 14|14 B predicted gene 3025 pseudo 102642381 Gm38608 - - 4|4 predicted gene, 38608 ncRNA 27791 D18Abb2e - - 18 45.79 cM DNA segment, Chr 18, Abbott 2 expressed unknown 105242625 XR_868960 Gm38786 - - 6 A3.3|6 predicted gene, 38786 ncRNA 102636373 XR_374376 Gm33458 - - 2 C1.1|2 predicted gene, 33458 ncRNA 18725 Mm.482470 NM_011089 ENSMUSG00000089942 Pira2 6M23 - 7|7 A1 paired-Ig-like receptor A2 protein-coding 11938 Mm.227583 NM_009722 ENSMUSG00000029467 Atp2a2 9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195 - 5 62.38 cM|5 F ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 protein-coding 259027 Mm.223412 NM_147025 ENSMUSG00000072709 Olfr380 MOR135-1 - 11|11 B4 olfactory receptor 380 protein-coding 100502865 Mm.476649 NM_001195383 ENSMUSG00000078257 2300003K06Rik - - 11|11 D RIKEN cDNA 2300003K06 gene protein-coding 97369 C78806 - - - expressed sequence C78806 unknown 102636677 Mm.122178 XR_381569 ENSMUSG00000112054 Gm33680 - - 12 B3|12 predicted gene, 33680 ncRNA 68079 Mm.38173 NM_026549 ENSMUSG00000002635 Pdcd2l 6030457N17Rik - 7|7 B1 programmed cell death 2-like protein-coding 492983 Kidq3 - - - kidney weight QTL 3 unknown 100036258 Tgct5 - - - testicular germ cell tumor 5 unknown 108168585 XM_017318789 LOC108168585 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 13113 Mm.289886 NM_007819 ENSMUSG00000029727 Cyp3a13 IIIAm2 - 5 G2|5 76.89 cM cytochrome P450, family 3, subfamily a, polypeptide 13 protein-coding 11566 Mm.338021 NM_007422 ENSMUSG00000015961 Adss AI314886|AS|Adss2 - 1|1 H4 adenylosuccinate synthetase, non muscle protein-coding 100504156 Mm.425749 NM_001195726 ENSMUSG00000096753 Fam181a EG544888 - 12|12 E family with sequence similarity 181, member A protein-coding 97936 Mm.482657 C87190 - - - expressed sequence C87190 protein-coding 97569 C87580 - - - expressed sequence C87580 unknown 21827 Mm.2114 NM_013691 ENSMUSG00000028047 Thbs3 TSP3|Thbs-3 - 3 F1|3 39.01 cM thrombospondin 3 protein-coding 20773 Mm.565 NM_011479 ENSMUSG00000021036 Sptlc2 LCB2|LCB2a|Spt2 - 12|12 D2 serine palmitoyltransferase, long chain base subunit 2 protein-coding 70045 Mm.271619 NM_001206684 ENSMUSG00000096001 2610528A11Rik AW494830|Gpr15l - 14|14 B RIKEN cDNA 2610528A11 gene protein-coding 633082 Gm12164 - - 11|11 B1.1 ferritin light chain 1 pseudogene pseudo 71025 Mm.399495 XR_881808 4933402C05Rik - - 7|7 A1 RIKEN cDNA 4933402C05 gene ncRNA 75415 Mm.239675 NM_029277 ENSMUSG00000041225 Arhgap12 2810011M08Rik - 18|18 A1 Rho GTPase activating protein 12 protein-coding 102636056 Gm33233 - - 3|3 predicted gene, 33233 ncRNA 69551 Mm.261920 NM_175149 ENSMUSG00000031983 2310022B05Rik - - 8|8 E2 RIKEN cDNA 2310022B05 gene protein-coding 258611 Mm.271464 NM_146618 ENSMUSG00000057067 Olfr297 MOR220-3 - 7|7 D3 olfactory receptor 297 protein-coding 627636 Mm.469855 NM_001104565 ENSMUSG00000091771 Vmn2r103 EG627636|Vmn103 - 17|17 A3.2 vomeronasal 2, receptor 103 protein-coding 100861501 NR_046154 ENSMUSG00000094270 Gm22291 Rn5s30 - 8 E1|8 predicted gene, 22291 rRNA 102634157 XR_378700 Gm31810 - - 8 A1.1|8 predicted gene, 31810 ncRNA 100134981 Gm17796 - - 1|1 E4 bystin-like pseudogene pseudo 110280 Ctl1 Ctl-1 - - cytotoxic T lymphocyte response 1 protein-coding 668672 Gm9298 EG668672 - 14|14 E2.2 predicted gene 9298 pseudo 15586 Mm.475658 NM_008317 ENSMUSG00000010051 Hyal1 Hya1|Hyal-1 - 9 F1|9 58.17 cM hyaluronoglucosaminidase 1 protein-coding 207139 Bbaa20 Bb20 - - B.burgdorferi-associated arthritis 20 unknown 382395 XM_487135 Gm5174 EG382395 - 10|10 C1 predicted gene 5174 protein-coding 100038360 Gm10803 - - - predicted gene 10803 unknown 105246982 XR_880615 Gm42170 - - X A2|X predicted gene, 42170 ncRNA 330998 Mm.294417 NM_207260 ENSMUSG00000047606 Ankrd34c B230218L05Rik|BB276295|Gm771 - 9|9 E3.1 ankyrin repeat domain 34C protein-coding 17389 Mm.187315 NM_019724 ENSMUSG00000028226 Mmp16 MT-MMP 3|MT3-MMP|Mt3mmp - 4 A3|4 7.08 cM matrix metallopeptidase 16 protein-coding 102633694 Mm.109360 XR_874528 Gm31456 - - 14 B|14 predicted gene, 31456 ncRNA 16158 Mm.458019 NM_010550 ENSMUSG00000078735 Il11ra2 Etl-2|Etl2|Il11ra-ps1 - 4 A5|4 22.73 cM interleukin 11 receptor, alpha chain 2 protein-coding 100417490 Gm16044 - - 7|7 F3 pentatricopeptide repeat domain 3 pseudogene pseudo 103432 Mm.439829 6430706H07Rik AW124826 - - RIKEN cDNA 6430706H07 gene protein-coding 78600 Mm.290622 NM_023898 ENSMUSG00000064330 Pde6h A930033D18Rik|PDEgamma - 6|6 G1 phosphodiesterase 6H, cGMP-specific, cone, gamma protein-coding 105246474 XR_877503 Gm41759 - - 18 E1|18 predicted gene, 41759 ncRNA 492837 Bmd8 - - 6 25.4 cM bone mineral density 8 unknown 100526499 NR_037272 ENSMUSG00000093091 Mir3089 mir-3089|mmu-mir-3089 - 2 B|2 21.72 cM microRNA 3089 ncRNA 111258527 LOC111258527 - - - Nos1 exon 2 regulatory region biological-region 116771 Cocia1 - - - cocaine induced activation 1 unknown 320964 B230378D16Rik - - 19|19 RIKEN cDNA B230378D16 gene protein-coding 22439 Mm.56468 NM_023500 ENSMUSG00000015342 Xk 1810038K19Rik|XRG1|Xkh - X A1.1|X 4.22 cM X-linked Kx blood group protein-coding 100040000 Mm.463772 Gm2545 - - 5|5 B1 predicted gene 2545 unknown 100042237 Mm.226311 XR_375773 Gm3740 - - 3 F1|3 predicted gene 3740 unknown 100312523 Vmn1r-ps93 Gm11293 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 93 pseudo 108168946 XM_017320485 LOC108168946 - - 4 A3 cyclic nucleotide-binding domain-containing protein 1-like protein-coding 320036 Mm.447882 D030041H20Rik - - 14|14 RIKEN cDNA D030041H20 gene ncRNA 68607 Mm.30056 NM_023475 ENSMUSG00000058586 Serhl 0610008B10Rik|1110019M09Rik|AU019786 - 15|15 E1 serine hydrolase-like protein-coding 627576 Mm.469857 NM_001104563 ENSMUSG00000094892 Vmn2r101 EG627576 - 17|17 A3.2 vomeronasal 2, receptor 101 protein-coding 382936 Hspd1-ps5 EG382936|Gm5208|Hspd1-3p - 14|14 E2.3 heat shock protein 1 (chaperonin), pseudogene 5 pseudo 17159 Mm.4219 NM_010764 ENSMUSG00000005142 Man2b1 AW107687|LAMAN - 8 C3|8 41.55 cM mannosidase 2, alpha B1 protein-coding 68386 Mm.410649 NR_028113 ENSMUSG00000058812 0610039K10Rik - - 2|2 H3 RIKEN cDNA 0610039K10 gene ncRNA 75647 Mm.46117 NM_027073 ENSMUSG00000029784 Ssmem1 1700016K02Rik|1700025E21Rik - 6|6 A3.3 serine-rich single-pass membrane protein 1 protein-coding 105244718 Gm40276 - - 5|5 predicted gene, 40276 ncRNA 72338 Mm.341719 NM_028203 ENSMUSG00000045690 Wdr89 2600001A11Rik - 12|12 C3 WD repeat domain 89 protein-coding 68077 Mm.277634 NM_133831 ENSMUSG00000041560 Nop53 5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911 - 7 8.64 cM|7 A2 NOP53 ribosome biogenesis factor protein-coding 666329 Mm.429277 NM_001242941 Gm3317 100041401 - 14 A1|14 predicted gene 3317 protein-coding 70881 Mm.272843 NM_027588 ENSMUSG00000020622 Nt5c1b 4921514H13Rik|AIRP|CN-IB|cN1B - 12|12 A1.1 5'-nucleotidase, cytosolic IB protein-coding 14229 Mm.276405 NM_010220 ENSMUSG00000024222 Fkbp5 D17Ertd592e|Dit1|FKBP-5|FKBP51 - 17 A3.3|17 14.66 cM FK506 binding protein 5 protein-coding 110178 Igh-Np - - - immunoglobulin heavy chain Np other 102631577 XR_385053 Gm29880 - - 16 C4|16 predicted gene, 29880 ncRNA 56615 Mm.14796 NM_019946 ENSMUSG00000008540 Mgst1 1500002K10Rik|Gst - 6|6 G1 microsomal glutathione S-transferase 1 protein-coding 102633394 Gm31229 - - 8|8 predicted gene, 31229 ncRNA 105245438 Gm40894 - - 12|12 predicted gene, 40894 ncRNA 107418 Bas - - - BALB murine sarcoma oncogene protein-coding 67531 Mm.475113 NR_027866 5730408K05Rik 2610018C13Rik - 19|19 A RIKEN cDNA 5730408K05 gene ncRNA 102637530 XR_383937 Gm34316 - - 15 B3.1|15 predicted gene, 34316 ncRNA 62841 D12Mit226 - - 12 32.81 cM DNA segment, Chr 12, Massachusetts Institute of Technology 226 unknown 387160 NR_029555 ENSMUSG00000105196 Mir142 Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a - 11 C|11 microRNA 142 ncRNA 633568 Ighv5-16 Gm16632 - 12|12 F1 immunoglobulin heavy variable 5-16 other 18481 Mm.40035 NM_008778 ENSMUSG00000031284 Pak3 PAK-3|Pak65alpha|Pak65beta|Stk4 - X|X F2 p21 (RAC1) activated kinase 3 protein-coding 545948 Mm.349644 NM_001270543 ENSMUSG00000094978 Scgb1b20 Abpa20|EG545948|Gm5895 - 7|7 B1 secretoglobin, family 1B, member 20 protein-coding 666348 Mm.303207 NM_001134802 ENSMUSG00000071716 Apol7e - - 15|15 E1 apolipoprotein L 7e protein-coding 100035854 W10q8 - - - weight 10 weeks QTL 8 unknown 102636786 Gm28290 - - Y|Y predicted gene 28290 ncRNA 257957 Olfr1068-ps1 GA_x6K02T2Q125-47941347-47940841|MOR189-5P - 2|2 olfactory receptor 1068, pseudogene 1 pseudo 258975 Mm.223366 NM_146973 ENSMUSG00000075090 Olfr1234 MOR231-2 - 2|2 E1 olfactory receptor 1234 protein-coding 78184 4930512P04Rik - - 3|3 RIKEN cDNA 4930512P04 gene protein-coding 108169078 XR_001785003 Gm46926 - - 5 G2|5 predicted gene, 46926 ncRNA 140889 D4Pot1 - - - DNA segment, Chr 4, Poetter 1 unknown 76606 Mm.272520 NM_029671 ENSMUSG00000029867 Llcfc1 1700034O15Rik - 6|6 B2.1 LLLL and CFNLAS motif containing 1 protein-coding 319277 Mm.491194 NM_001033375 ENSMUSG00000034560 Washc4 A230046K03Rik|AA589518|Kiaa1033|mKIAA1033 - 10|10 C1 WASH complex subunit 4 protein-coding 102633109 XR_390440 Gm11884 - - 4 A3|4 10.27 cM predicted gene 11884 ncRNA 100417583 Gm18697 - - 1|1 D trans-acting transcription factor 1 pseudogene pseudo 64249 Snord116l6 Gm26136|Pwcr1l6 - - small nucleolar RNA, C/D box 116-like 6 snoRNA 19200 Mm.2534 NM_011193 ENSMUSG00000032322 Pstpip1 CD2BP1|def-2 - 9|9 B proline-serine-threonine phosphatase-interacting protein 1 protein-coding 628262 Gm6860 EG628262 - 1|1 C1.3 ribosomal protein S27 pseudogene pseudo 60761 D2Mit57 - - 2 73.42 cM DNA segment, Chr 2, Massachusetts Institute of Technology 57 unknown 100503882 Mm.139814 NR_153343 ENSMUSG00000096922 Gm17308 - - 3 A1|3 1.96 cM predicted gene, 17308 ncRNA 62101 D11Mit87 - - 11 31.86 cM DNA segment, Chr 11, Massachusetts Institute of Technology 87 unknown 100034728 Rps12-ps4 Gm1970 - 7 B1|7 ribosomal protein S12, pseudogene 4 pseudo 21310 T(X;4)8Rl T8Rl - - reciprocal translocation, Chr X and 4, Russell 8 other 668415 Mm.483779 NR_033398 Gm9159 EG668415 - X|X D predicted gene 9159 pseudo 100417534 Gm18671 - - 10|10 B1 small nuclear ribonucleoprotein B pseudogene pseudo 111639 Ms6-2 - - - minisatellite-2 detected by probe 33.6 other 446101 Mm.440757 NM_001164258 ENSMUSG00000035211 Xrra1 AI449753 - 7|7 E2 X-ray radiation resistance associated 1 protein-coding 101055798 XR_379213 Gm29724 - - 9 A4|9 predicted gene, 29724 ncRNA 108257 Gapdh-ps9 Gapd-ps9|domes17 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 9 pseudo 102631918 Gm30129 - - 5|5 predicted gene, 30129 ncRNA 108168469 LOC108168469 - - X A5 60S ribosomal protein L36 pseudogene pseudo 623166 Mm.390211 NM_001134660 ENSMUSG00000091080 Prr23a1 EG623166|Gm6400|Prr23a - 9|9 E3.3 proline rich 23A, member 1 protein-coding 110671 Fti1 fit-1 - - feline leukemia virus T cell integration 1 protein-coding 387340 Mm.377903 NM_207011 ENSMUSG00000061977 Tas2r104 T2R04|Tas2r4|mGR04|mt2r45 - 6 F3|6 63.53 cM taste receptor, type 2, member 104 protein-coding 105245044 XR_872920 Gm40554 - - 12 E|12 predicted gene, 40554 ncRNA 105246552 Gm41826 - - 19|19 predicted gene, 41826 ncRNA 170749 Mm.399376 NM_133215 ENSMUSG00000018401 Mtmr4 AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647 - 11|11 C myotubularin related protein 4 protein-coding 100035731 Ath18 - - 12 15.71 cM atherosclerosis 18 unknown 105244212 XR_866494 Gm39860 - - 2 C3|2 predicted gene, 39860 ncRNA 72880 2900027M19Rik - - 8|8 A1.1 RIKEN cDNA 2900027M19 gene unknown 99820 AU024605 - - - expressed sequence AU024605 unknown 100158261 Gm14921 - - X|X E1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 66752 Mm.135764 NR_015555 ENSMUSG00000097908 4933404O12Rik AW494809 - 5 G2|5 RIKEN cDNA 4933404O12 gene ncRNA 100415946 Gm17832 - - 13|13 D1 ezrin pseudogene pseudo 110235 Igh-Sa2 - - - immunoglobulin heavy chain Sa2 other 623301 Gm13961 - - 2|2 E3 RB1-inducible coiled-coil 1 pseudogene pseudo 77045 Mm.151960 NM_029850 ENSMUSG00000029438 Bcl7a 4432415N06Rik|AI448316 - 5|5 F B cell CLL/lymphoma 7A protein-coding 212123 Mm.260557 NM_172502 ENSMUSG00000037103 Dcaf15 6720484B16 - 8|8 C2 DDB1 and CUL4 associated factor 15 protein-coding 73488 Mm.243735 XR_376664 1700080G11Rik - - 4|4 D2.2 RIKEN cDNA 1700080G11 gene ncRNA 100038433 Mm.445235 9130213A22Rik - - - RIKEN cDNA 9130213A22 gene unknown 108169056 XR_001784894 Gm46916 - - 5 E3|5 predicted gene, 46916 ncRNA 242126 Mm.90204 NM_001039371 ENSMUSG00000033147 Slc22a15 2610034P21Rik|4930477M19|A530052I06Rik|BB219042 - 3|3 F2.2 solute carrier family 22 (organic anion/cation transporter), member 15 protein-coding 319830 Mm.400394 NR_015498 1500004A13Rik 5430404N14Rik|BB132176 - 3|3 F1 RIKEN cDNA 1500004A13 gene ncRNA 384968 Gm5370 EG384968 - 9|9 E3.3 predicted gene 5370 pseudo 100039392 Gm12151 - - 11|11 B1.1 predicted gene 12151 pseudo 109429 Bslm2 - - - basal locomotor activity 2 unknown 108168099 XR_001780989 Gm46428 - - 13 B3|13 predicted gene, 46428 ncRNA 319689 Mm.439954 Gm17739 - - 5|5 A1 predicted gene, 17739 unknown 102642389 XR_878352 Gm38609 - - 1 D|1 predicted gene, 38609 ncRNA 402729 Mm.119051 9330184L24Rik - - X|X RIKEN cDNA 9330184L24 gene protein-coding 442794 D3Tem3 - - - DNA segment, Chr 3, Temple 3 unknown 102638410 Gm34985 - - 12|12 predicted gene, 34985 ncRNA 102635004 XR_001784956 Gm32449 - - 5 F|5 predicted gene, 32449 ncRNA 22204 Uba1y-ps2 Ube1y1-ps2|ube1y-p2 - Y|Y A1 ubiquitin-activating enzyme, Chr Y, pseudogene 2 pseudo 319607 A230060L02Rik - - 3|3 RIKEN cDNA A230060L02 gene protein-coding 102632479 XR_386784 Gm30541 - - 19 D2|19 predicted gene, 30541 ncRNA 102634235 XR_373398 Gm31867 - - 1 C1.1|1 predicted gene, 31867 ncRNA 70533 Mm.379178 NM_027453 ENSMUSG00000028568 Btf3l4 4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446 - 4|4 C7 basic transcription factor 3-like 4 protein-coding 102637450 XR_379077 Gm34255 - - 8 B3.3|8 predicted gene, 34255 ncRNA 102632012 XR_380791 Gm30193 - - 10 D1|10 predicted gene, 30193 ncRNA 21935 Mm.12935 NM_011608 ENSMUSG00000022496 Tnfrsf17 BCM|BCMA|Tnfrsf13|Tnfrsf13a - 16|16 A1 tumor necrosis factor receptor superfamily, member 17 protein-coding 78147 8430439B09Rik - - X|X A1.1 RIKEN cDNA 8430439B09 gene protein-coding 103959 Ubb3 - - - ubiquitin 3 protein-coding 67350 Mm.402683 NR_028299 1700084E18Rik - - 2|2 B RIKEN cDNA 1700084E18 gene ncRNA 219257 Mm.128861 NM_178685 ENSMUSG00000050505 Pcdh20 C630015B17Rik|Pcdh13 - 14|14 E1 protocadherin 20 protein-coding 258189 Mm.377374 NM_001011865 ENSMUSG00000045780 Olfr624 MOR4-2P - 7|7 E3 olfactory receptor 624 protein-coding 105244341 XR_866890 Gm39970 - - 2 H1|2 predicted gene, 39970 ncRNA 666135 NM_001359708 Gm14590 - - X A5|X predicted gene 14590 protein-coding 109279911 LOC109279911 Mm134 - - VISTA enhancer mm134 biological-region 27642 DXHXS1104 DXBay10 - - DNA segment, Chr X, human DXS1104 unknown 105246331 Gm41632 - - 17|17 predicted gene, 41632 ncRNA 109339 2700018L05Rik - - - RIKEN cDNA 2700018L05 gene protein-coding 66329 Mm.34308 NM_025491 ENSMUSG00000021384 Susd3 1700017I11Rik|2810440J20Rik - 13|13 A5 sushi domain containing 3 protein-coding 667485 Mm.482056 NM_001166751 ENSMUSG00000093917 Gm8660 EG667485|Vmn1r147 - 7|7 A3 predicted gene 8660 protein-coding 105980076 NM_001310055 ENSMUSG00000079033 Gm45929 2310045n01rik-mef2b - 8 B3.3|8 predicted gene, 45929 protein-coding 667727 Gm8784 EG667727 - 13 A1|13 predicted gene 8784 pseudo 233900 Mm.41122 NM_172281 ENSMUSG00000030816 Rnf40 AI848422|BRE1-B|mKIAA0661 - 7|7 F3 ring finger protein 40 protein-coding 245595 Mm.259846 NM_177747 ENSMUSG00000025529 Zfp711 2810409C01Rik|A230078I01Rik|Znf711 - X|X E1 zinc finger protein 711 protein-coding 100503852 Gm19927 - - 1|1 50.79 cM uncharacterized protein C3orf32 homolog pseudo 69696 Mm.358728 NM_027170 ENSMUSG00000048830 2310057N15Rik Krtap13-1 - 16|16 C3.3 RIKEN cDNA 2310057N15 gene protein-coding 192651 Mm.168530 NM_138949 ENSMUSG00000047342 Zfp286 BC027023 - 11|11 B2 zinc finger protein 286 protein-coding 14538 Mm.314757 NM_008105 ENSMUSG00000021360 Gcnt2 5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC - 13 A3.3|13 20.12 cM glucosaminyl (N-acetyl) transferase 2, I-branching enzyme protein-coding 105243552 Gm39442 - - 11|11 predicted gene, 39442 ncRNA 102638632 Mm.101512 NR_151523 ENSMUSG00000097045 Gm26641 - - 1 H3|1 predicted gene, 26641 ncRNA 102635756 Mm.417701 XR_867671 Gm15689 - - 3 H1|3 65.98 cM predicted gene 15689 ncRNA 665114 Gm7498 EG665114 - 6|6 C3 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 102637339 Gm27005 - - 16|16 predicted gene, 27005 pseudo 107450 Fv3 Fv-3 - - Friend virus susceptibility 3 unknown 108173 Ubl1-ps1 Pic1-ps1 - - ubiquitin-like 1, pseudogene 1 pseudo 105245925 XR_875174 Gm15942 - - 15 B3.1|15 15.08 cM predicted gene 15942 ncRNA 68473 Mm.35764 NM_026735 ENSMUSG00000006262 Mob1b 1110003E08Rik|AU015450|B230364F10|Mobkl1a - 5|5 E1 MOB kinase activator 1B protein-coding 77947 Mm.404822 A930014D07Rik - - 13|13 RIKEN cDNA A930014D07 gene protein-coding 102466620 NR_105748 ENSMUSG00000098343 Mir6240 Gm27850|mmu-mir-6240 - 5|5 F microRNA 6240 ncRNA 102467322 n-TIaat4 n-Ti4 - 11 B3|11 nuclear encoded tRNA isoleucine 4 (anticodon AAT) tRNA 18969 Mm.209931 NM_008893 ENSMUSG00000024833 Pola2 AI573378 - 19|19 A polymerase (DNA directed), alpha 2 protein-coding 214450 Gm4789 EG214450 - X A2|X testis derived transcript pseudogene pseudo 102680 Mm.440867 NM_139142 ENSMUSG00000036814 Slc6a20a A730081N20Rik|AU022428|Xt3s1|Xtrp3s1 - 9 F4|9 74.26 cM solute carrier family 6 (neurotransmitter transporter), member 20A protein-coding 60868 D6Mit59 - - 6 69.36 cM DNA segment, Chr 6, Massachusetts Institute of Technology 59 unknown 110963 D6Mit97 - - 6 31.09 cM DNA segment, Chr 6, Massachusetts Institute of Technology 97 unknown 93890 Mm.118311 NM_053144 ENSMUSG00000043313 Pcdhb19 Pcdhb11|PcdhbS - 18|18 B3 protocadherin beta 19 protein-coding 105243489 XR_880234 Gm39395 - - 11 E1|11 predicted gene, 39395 ncRNA 623272 Mm.389560 NM_001085538 ENSMUSG00000096750 Gm11757 - - 4|4 C3 predicted gene 11757 protein-coding 105244786 XR_001784986 Gm40336 - - 5 G1.3|5 predicted gene, 40336 ncRNA 654440 Mm.441262 NR_131150 ENSMUSG00000097353 A430046D13Rik - - 10 D3|10 Riken cDNA A430046D13 gene ncRNA 100036428 Cia26 - - - collagen induced arthritis QTL 26 unknown 64540 Mm.489619 NM_053082 ENSMUSG00000025511 Tspan4 AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4 - 7|7 F5 tetraspanin 4 protein-coding 81898 Mm.279736 NM_031179 ENSMUSG00000025982 Sf3b1 155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4 - 1 C1.2|1 27.98 cM splicing factor 3b, subunit 1 protein-coding 100040009 Gm2553 - - 9|9 C COMM domain containing 9 pseudogene pseudo 665535 Gm7675 EG665535 - 7|7 D1 predicted gene 7675 pseudo 20850 Mm.277403 NM_011488 ENSMUSG00000004043 Stat5a AA959963|STAT5 - 11 D|11 63.77 cM signal transducer and activator of transcription 5A protein-coding 56788 Mm.40447 NM_020052 ENSMUSG00000007279 Scube2 4932442O19Rik|Cegf1|Cegp1 - 7 E3|7 57.53 cM signal peptide, CUB domain, EGF-like 2 protein-coding 331531 Mm.336240 NM_177918 ENSMUSG00000054994 AV320801 4932408M16 - X|X F1 expressed sequence AV320801 protein-coding 100041754 Gm15219 Gm1584 - 14|14 C1 predicted gene 15219 protein-coding 102639108 Gm28877 - - 9|9 predicted gene 28877 pseudo 97287 Mm.197816 NM_026849 ENSMUSG00000030269 Mtmr14 1110061O04Rik|AW553738|C76151 - 6|6 E3 myotubularin related protein 14 protein-coding 105246083 XR_875947 Gm41430 - - 16 A3|16 predicted gene, 41430 ncRNA 664942 Gm13858 - - 6|6 B1 cancer susceptibility candidate 4 pseudogene pseudo 18313 Mm.377103 NM_008763 ENSMUSG00000037924 Olfr16 MOR23|MOR26713 - 1|1 H3 olfactory receptor 16 protein-coding 109410 Aliq2 Ali2 - - acute lung injury QTL 2 unknown 111603 Xmv18 Xmv-18 - - xenotropic murine leukemia virus 18 other 100418378 Gm19169 - - 10|10 D2 TPX2, microtubule-associated protein homolog pseudogene pseudo 100169874 Mm.76700 NR_033508 ENSMUSG00000079414 Gm11110 - - 17 D|17 predicted gene 11110 ncRNA 19657 Mm.4711 NM_011253 ENSMUSG00000094658 Rbmy RBM|Rbm1|Rbm1-rs1|Rbmy1a1|Rbmy1a1-rs1|Rbmy1b - Y|Y A1 RNA binding motif protein, Y chromosome protein-coding 112119 Bglq13 - - - body growth late QTL 13 unknown 102638716 Gm35210 - - X A5|X predicted gene, 35210 pseudo 70847 Mm.297225 4733401D01Rik - - 14|14 RIKEN cDNA 4733401D01 gene protein-coding 100040540 Gm10288 - - 3|3 H2 ribosomal protein L11 pseudogene pseudo 105246609 XR_877966 Gm41876 - - 19 D2|19 predicted gene, 41876 ncRNA 62257 D18Mit49 - - 18 51.27 cM DNA segment, Chr 18, Massachusetts Institute of Technology 49 unknown 76666 1700120E02Rik - - 9|9 RIKEN cDNA 1700120E02 gene protein-coding 105243889 XR_872321 Gm39613 - - 11 A3.2|11 predicted gene, 39613 ncRNA 102631521 Gm29839 - - Y|Y predicted gene, 29839 protein-coding 544748 Mm.457884 NM_001085477 ENSMUSG00000056853 Olfr765 - - 10|10 D3 olfactory receptor 765 protein-coding 359927 DXMgc65 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 65 unknown 72218 Mm.443271 NR_045898 ENSMUSG00000086569 Rab11fip4os2 1700020F10Rik|4930542H20Rik|Rab11fib4os2 - 11|11 B5 RAB11 family interacting protein 4 (class II), opposite strand 2 ncRNA 108168051 LOC108168051 - - 13 A3.1 60S ribosomal protein L27a pseudogene pseudo 27280 Mm.34346 NM_013750 ENSMUSG00000041801 Phlda3 Tih1 - 1 E4|1 59.26 cM pleckstrin homology like domain, family A, member 3 protein-coding 67993 Mm.36507 NM_026497 ENSMUSG00000024228 Nudt12 0610016O18Rik - 17|17 D nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 53873 Mm.221324 NM_017385 Ear7 mR7 - - eosinophil-associated, ribonuclease A family, member 7 protein-coding 75355 Mm.142685 NR_155305 ENSMUSG00000106791 4930553P18Rik - - 6|6 C3 RIKEN cDNA 4930553P18 gene ncRNA 105242888 Mm.249787 XR_881908 Gm38973 Gm44685 - 7 A3|7 predicted gene, 38973 ncRNA 100801 AU018552 - - - expressed sequence AU018552 protein-coding 111684 Mpmv5 Mpmv-5 - - modified polytropic murine leukemia virus 5 other 433463 Gm13929 - - 2|2 E3 L-threonine dehydrogenase pseudogene pseudo 105245187 XR_871762 Gm40674 - - 10 B4|10 predicted gene, 40674 ncRNA 14724 Mm.475622 NM_010327 ENSMUSG00000050761 Gp1bb - - 16 A3|16 11.53 cM glycoprotein Ib, beta polypeptide protein-coding 116871 Mm.277668 NM_054082 ENSMUSG00000055817 Mta3 1110002J22Rik|mKIAA1266 - 17|17 E4 metastasis associated 3 protein-coding 117216 Thim Tim-1 - - thymoma insertional mutation unknown 432658 LOC432658 - - 12|12 B3 uncharacterized LOC432658 unknown 668433 Mm.425687 NM_001145537 ENSMUSG00000087279 4930544D05Rik - - 11|11 B3 RIKEN cDNA 4930544D05 gene protein-coding 102635494 Mm.417600 XR_388929 Gm12576 - - 11 C|11 51.23 cM predicted gene 12576 ncRNA 110563 H2-T8 H-2T8 - - histocompatibility 2, T region locus 8 protein-coding 11684 Mm.12286 NM_007440 ENSMUSG00000000320 Alox12 9930022G08Rik|Alox12p|P-12LO - 11 B3|11 42.99 cM arachidonate 12-lipoxygenase protein-coding 625029 Mm.469865 NM_001104537 ENSMUSG00000091381 Vmn2r83 EG625029 - 10|10 C1 vomeronasal 2, receptor 83 protein-coding 105243851 XR_865144 ENSMUSG00000085404 Gm12909 - - 4 B3|4 33.0 cM predicted gene 12909 ncRNA 194357 Mm.207087 NM_139296 ENSMUSG00000029885 Moxd2 Dbhl1 - 6|6 B1 monooxygenase, DBH-like 2 protein-coding 241308 Mm.274249 NM_175211 ENSMUSG00000038831 Ralgps1 5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351 - 2|2 B Ral GEF with PH domain and SH3 binding motif 1 protein-coding 632248 Gm7083 EG632248 - 15 D1|15 predicted gene 7083 protein-coding 27360 Mm.426080 NM_013758 ENSMUSG00000025026 Add3 AI463285|R75380 - 19 D2|19 47.18 cM adducin 3 (gamma) protein-coding 71369 Mm.251757 NM_130872 ENSMUSG00000096534 Krtap16-3 5430404J20Rik|Krtap16-10 - 16|16 C3.3 keratin associated protein 16-3 protein-coding 102636564 XR_385574 Gm33595 - - 17 B1|17 predicted gene, 33595 ncRNA 105243331 XR_879360 Gm39284 - - 8 E2|8 predicted gene, 39284 ncRNA 100504233 Gm20124 - - 6 G3|6 77.03 cM predicted gene, 20124 pseudo 20259 Mm.2416 NM_009132 ENSMUSG00000002565 Scin AW545522|adseverin - 12|12 B1 scinderin protein-coding 70208 Mm.28020 NM_027347 ENSMUSG00000019984 Med23 130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216 - 10 A4|10 12.26 cM mediator complex subunit 23 protein-coding 217149 Mm.29659 NM_001085500 ENSMUSG00000078695 Cisd3 Mel-13|Mel13 - 11|11 D CDGSH iron sulfur domain 3 protein-coding 259281 Ap8q - - 8 12.47 cM alcohol preference 8 QTL unknown 320821 A130022D17Rik - - 13|13 A3.1 RIKEN cDNA A130022D17 gene protein-coding 78039 Mm.108536 XR_878661 ENSMUSG00000093557 4930555M17Rik - - 3|3 A1 RIKEN cDNA 4930555M17 gene ncRNA 100042079 XM_017318796 Gm20901 - - Y|Y B predicted gene, 20901 protein-coding 625336 Rpl36-ps8 Gm12995 - 4 D1|4 ribosomal protein L36, pseudogene 8 pseudo 73750 Mm.300397 NM_028640 ENSMUSG00000039137 Whrn 1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi - 4 33.97 cM|4 C1 whirlin protein-coding 246198 Mm.23685 NM_139311 ENSMUSG00000038437 Mllt6 AI315037|Af17 - 11 D|11 61.05 cM myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 protein-coding 16268 In(2)3Dn-p In(2)3Dn|In3Dn - - inversion, Chr 2, Davisson 3, proximal other 100416671 Gm18182 - - 1|1 E2.3 zinc finger protein 599 pseudogene pseudo 105246513 Gm41794 - - 18|18 predicted gene, 41794 ncRNA 85089 D16Mit2 - - 16 13.8 cM DNA segment, Chr 16, Massachusetts Institute of Technology 2 unknown 105242904 XR_880201 Gm38985 - - 11 D|11 predicted gene, 38985 ncRNA 110120539 LOC110120539 - - - VISTA enhancer mm1498 biological-region 24030 Mm.358650 NM_011885 ENSMUSG00000045948 Mrps12 AI327385|Rpms12|rps12 - 7|7 B1 mitochondrial ribosomal protein S12 protein-coding 100504501 Mm.440933 NR_045007 ENSMUSG00000102059 Gm20257 - - 1 C1.3|1 29.15 cM caspase 8 pseudogene pseudo 77667 9130231A04Rik - - 2|2 RIKEN cDNA 9130231A04 gene protein-coding 386446 Trav15-1-dv6-1 Gm16591|Tradv15-1|Trav15-1/dv6-1 - 14|14 C2 T cell receptor alpha variable 15-1-DV6-1 other 108167516 n-TEttc7 Trnae-uuc|n-Te17 - 7 B5|7 nuclear encoded tRNA glutamic acid 7 (anticodon TTC) tRNA 100034960 Brmth2 - - - behavioral response to methamphetamines 2 unknown 102632160 Mm.402600 Gm30307 - - 1|1 predicted gene, 30307 ncRNA 621988 Gm6276 EG621988 - 17|17 E2 ribosomal protein L19 pseudogene pseudo 72951 2900022M07Rik - - 1|1 RIKEN cDNA 2900022M07 gene protein-coding 100036753 Mlca1 - - - modifier of locomotor activity 1 unknown 435318 Serpina3d-ps 2B1|Gm5657|Serpina3d|spi1 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 3D, pseudogene pseudo 74575 4833406M21Rik - - 13|13 RIKEN cDNA 4833406M21 gene protein-coding 28133 D9Mgc40e ET1 - - DNA segment, Chr 9, MRC UK Mouse Genome Centre 40 expressed unknown 102638587 XR_383713 Gm35116 - - 14 E2.3|14 predicted gene, 35116 ncRNA 66073 Mm.159965 NM_025334 ENSMUSG00000028567 Txndc12 0610040B21Rik|ERp16|ERp19 - 4|4 C7 thioredoxin domain containing 12 (endoplasmic reticulum) protein-coding 102640592 XR_880783 Gm36620 - - 3 B|3 predicted gene, 36620 ncRNA 319523 Mm.22233 E330021A06Rik - - 4|4 RIKEN cDNA E330021A06 gene protein-coding 53963 Mm.440786 D630030B22Rik AI050559|AU042657 - - RIKEN cDNA D630030B22 gene protein-coding 74709 Mm.484033 XR_878966 4930505O20Rik - - 8|8 C2 RIKEN cDNA 4930505O20 gene ncRNA 100041191 Gm3191 - - 12|12 F1 ubiquinol-cytochrome c reductase hinge protein pseudogene pseudo 100048534 Mm.29457 NM_027559 ENSMUSG00000044948 Cfap43 4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96 - 19 40.41 cM|19 D1 cilia and flagella associated protein 43 protein-coding 100034985 Skmw6 - - - skeletal muscle weight 6 unknown 258016 Mm.377328 NM_001011799 ENSMUSG00000095831 Olfr453 MOR257-8P - 6|6 B2.1 olfactory receptor 453 protein-coding 641340 Mm.136223 NM_001036293 ENSMUSG00000075000 Nrbf2 NRBF-2 - 10|10 B5.1 nuclear receptor binding factor 2 protein-coding 100216343 Mm.24681 Gm17501 - - 3|3 predicted gene, 17501 unknown 100035872 Adip15 - - 10 46.85 cM adiposity 15 unknown 102636851 XR_375309 Gm33806 - - 2 H3|2 predicted gene, 33806 ncRNA 620734 Gm6175 EG620734 - X|X C3 predicted gene 6175 pseudo 384971 Gm5371 EG384971 - 9|9 E3.3 pyruvate kinase, muscle pseudogene pseudo 102639196 Gm21766 - - Y|Y predicted gene, 21766 protein-coding 102640870 XR_381742 Gm36834 - - 12 C3|12 predicted gene, 36834 ncRNA 100417282 Gm18500 - - 12|12 D3 crumbs homolog 1 pseudogene pseudo 100417576 Gm18694 - - 16|16 B5 solute carrier family 44, member 2 pseudogene pseudo 78843 B230207M22Rik - - 13|13 RIKEN cDNA B230207M22 gene protein-coding 102637883 Gm29475 - - Y|Y predicted gene 29475 pseudo 15247 Mm.280077 NM_008246 ENSMUSG00000089911 Mfsd14a Hiat1 - 3|3 G1 major facilitator superfamily domain containing 14A protein-coding 108169079 XR_001785004 Gm46927 - - 5 G2|5 predicted gene, 46927 ncRNA 668367 Gm9131 EG668367 - 3|3 F2.1 TD and POZ domain containing pseudogene pseudo 234309 Mm.29059 NM_145595 ENSMUSG00000031641 Cbr4 A730083J17Rik|BC009118 - 8|8 B3.1 carbonyl reductase 4 protein-coding 20970 Mm.206536 NM_011520 ENSMUSG00000025743 Sdc3 Synd3|mKIAA0468|syn-3 - 4 D2.2|4 63.63 cM syndecan 3 protein-coding 100861662 Gm21114 - - Y|Y predicted gene, 21114 protein-coding 102632167 XR_379202 Gm30313 - - 9 A4|9 predicted gene, 30313 ncRNA 100088 Mm.255045 NM_133878 ENSMUSG00000028896 Rcc1 4931417M11Rik|AI326872|Chc1 - 4|4 D2.3 regulator of chromosome condensation 1 protein-coding 100519 AA516738 - - - expressed sequence AA516738 protein-coding 101514 AI256670 - - - expressed sequence AI256670 unknown 442807 D630036G22Rik - - - RIKEN cDNA D630036G22 gene protein-coding 23915 Ifld4 F23 - - induced in fatty liver dystrophy 4 protein-coding 76178 Mm.28085 NM_198006 ENSMUSG00000026112 Coa5 1700001A24Rik|6330578E17Rik|Pet191 - 1|1 B cytochrome C oxidase assembly factor 5 protein-coding 319586 Mm.152689 NM_176954 ENSMUSG00000034818 Celf5 4930565A21Rik|Brunol5 - 10|10 C1 CUGBP, Elav-like family member 5 protein-coding 108168834 XR_001783621 Gm46786 - - 2 G3|2 predicted gene, 46786 ncRNA 11890 Mm.1357 NM_007493 ENSMUSG00000040963 Asgr2 ASGPR2|Asgr|Asgr-2|HL-2 - 11 B3|11 42.99 cM asialoglycoprotein receptor 2 protein-coding 114158 Cia10 Mcia2 - 13|13 53.81 cM collagen induced arthritis QTL 10 unknown 630298 Vh7183.a28.48 - - 12|12 Ig heavy chain V region VH7183.a28.48 other 100417597 Gm18706 - - 7|7 B3 erythrocyte protein band 4.1-like 5 pseudogene pseudo 329581 Mm.187879 NM_001163247 ENSMUSG00000038840 Birc7 E130019N06|KIAP|Livin|ML-IAP - 2|2 H4 baculoviral IAP repeat-containing 7 (livin) protein-coding 100035349 Org8 ORG12.1 - 12 44.05 cM organ weight 8 unknown 102640506 XR_376697 Gm36548 Gm42426 - 5 A1|5 predicted gene, 36548 ncRNA 227099 Mm.60499 NM_153556 ENSMUSG00000026098 Pms1 - - 1|1 C1.1 PMS1 homolog 1, mismatch repair system component protein-coding 109628 Pepb Pep-2|Pep2|Trip-1 - 10|10 peptidase B protein-coding 70991 Mm.206362 4931432E15Rik - - 14|14 RIKEN cDNA 4931432E15 gene unknown 102635903 XR_383786 4930424E08Rik - - 14|14 E4 RIKEN cDNA 4930424E08 gene ncRNA 61093 D4Mit315 - - 4 3.0 cM DNA segment, Chr 4, Massachusetts Institute of Technology 315 unknown 16665 Mm.440010 NM_008469 ENSMUSG00000054146 Krt15 AI528832|K15|Krt1-15 - 11 D|11 63.41 cM keratin 15 protein-coding 112266 Dps1 - - 13 45.05 cM delta power in slow-wave sleep 1 unknown 171227 Mm.451646 NM_134193 ENSMUSG00000062165 Vmn1r232 V1re4 - 17|17 A3.2 vomeronasal 1 receptor 232 protein-coding 214531 Mm.394987 NM_001013373 ENSMUSG00000037129 Tmprss13 BC010843|Tpmrss13 - 9|9 A5.2 transmembrane protease, serine 13 protein-coding 73567 Mm.211290 NM_001033169 ENSMUSG00000074343 Gldnos 1700104A03Rik - 9|9 A5.3 gliomedin, opposite strand ncRNA 195564 Mm.259652 NM_177578 ENSMUSG00000070868 Skint3 A430090E18Rik|Skint-3 - 4|4 D1 selection and upkeep of intraepithelial T cells 3 protein-coding 102636738 XR_380154 Gm33728 - - 10 A3|10 predicted gene, 33728 ncRNA 16736 L1Md-Tf30 ORF1 - 7|7 L1 repeat, Tf subfamily, member 30 other 21761 Mm.426209 NM_024431 ENSMUSG00000062270 Morf4l1 MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002 - 9|9 E3.1 mortality factor 4 like 1 protein-coding 545423 Gm13653 - - 2|2 C3 predicted gene 13653 protein-coding 668158 Mm.482792 NM_001159910 ENSMUSG00000084883 Ccdc85c EG668158|Gm265|Gm9010|hhy - 12|12 F1 coiled-coil domain containing 85C protein-coding 102633364 Gm31207 - - 3|3 predicted gene, 31207 ncRNA 667897 Gm8869 EG667897 - 3|3 F1 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 pseudogene pseudo 435509 XM_017317768 Gm5681 EG435509 - 17|17 A3.2 predicted gene 5681 protein-coding 110889 Cyp2b6l - - - cytochrome P450, family 2, subfamily b, polypeptide 6, like protein-coding 105242725 XR_869305 Gm38865 - - 6 D3|6 predicted gene, 38865 ncRNA 68482 1110007E10Rik - - 4|4 RIKEN cDNA 1110007E10 gene protein-coding 71517 Mm.213298 NM_027815 ENSMUSG00000030982 9030624J02Rik 2610029J22Rik - 7|7 F2 RIKEN cDNA 9030624J02 gene protein-coding 100040641 Gm2877 - - 14|14 A1 ribosomal protein L3 pseudogene pseudo 15601 Iap1-3 IAP - - intracisternal A particle, Eya1 linked other 18857 Mm.371777 NM_001030305 ENSMUSG00000052468 Pmp2 P2 - 3 A1|3 2.54 cM peripheral myelin protein 2 protein-coding 319190 Mm.439791 NM_178214 ENSMUSG00000068854 Hist2h2be AV127319|H2b-613|T25626 - 3|3 F2.1 histone cluster 2, H2be protein-coding 105246029 Gm41391 - - 15|15 predicted gene, 41391 ncRNA 319704 E030002G19Rik - - 10|10 D1 RIKEN cDNA E030002G19 gene protein-coding 71954 Mm.34456 NM_178622 ENSMUSG00000066900 Suds3 2400003N08Rik|2410008L21Rik|AU067672|mSds3 - 5|5 F suppressor of defective silencing 3 homolog (S. cerevisiae) protein-coding 20349 Mm.134093 NM_011348 ENSMUSG00000063531 Sema3e 6430702L12|AA408817|Semah|mKIAA0331 - 5|5 A1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E protein-coding 18706 Mm.260521 NM_008839 ENSMUSG00000027665 Pik3ca 6330412C24Rik|caPI3K|p110|p110alpha - 3 A3|3 15.7 cM phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding 22278 Mm.8 NM_009480 ENSMUSG00000026641 Usf1 bHLHb11 - 1 H3|1 79.4 cM upstream transcription factor 1 protein-coding 668531 Gm9226 EG668531 - 7 B3|7 zinc finger, MYND-type containing 8 pseudogene 1 pseudo 234776 Mm.259736 NM_177700 ENSMUSG00000047388 Atmin Asciz|gpg6|mKIAA0431 - 8|8 E1 ATM interactor protein-coding 102639587 XR_380889 Gm35865 - - 10 D2|10 predicted gene, 35865 ncRNA 102636626 XR_001778516 Gm33637 - - 8 A1.1|8 predicted gene, 33637 ncRNA 258722 Mm.377656 NM_146727 ENSMUSG00000096584 Olfr611 MOR15-1|MOR15-4 - 7|7 E3 olfactory receptor 611 protein-coding 622699 XM_011249338 Gm12569 - - 11|11 B1.3 predicted gene 12569 protein-coding 668460 Gm12780 - - 7|7 B1 predicted gene 12780 pseudo 102635851 XR_379980 Gm33088 - - 9 F3|9 predicted gene, 33088 ncRNA 71712 Mm.35450 NM_027878 ENSMUSG00000020057 Dram1 1200002N14Rik|Dram - 10|10 C1 DNA-damage regulated autophagy modulator 1 protein-coding 97570 C87679 - - - expressed sequence C87679 unknown 98748 BB168363 - - - expressed sequence BB168363 unknown 106185 Mm.442622 AI324963 - - - expressed sequence AI324963 unknown 110131 H2-Ke1 H-2Ke1|Ke-1 - - H2-K region expressed gene 1 protein-coding 192663 Mm.101876 NM_138955 ENSMUSG00000032131 Abcg4 6430517O04Rik - 9|9 A5.2 ATP binding cassette subfamily G member 4 protein-coding 102635393 XR_375286 Gm32747 - - 2 H3|2 predicted gene, 32747 ncRNA 102636760 XR_001780285 Gm33742 - - 11 C|11 predicted gene, 33742 ncRNA 102637678 Gm12403 - - 4 A5|4 21.09 cM predicted gene 12403 pseudo 100502647 Gm11583 - - 11|11 60.95 cM predicted gene 11583 ncRNA 442853 D6Tem3 - - 6 61.59 cM DNA segment, Chr 6, Temple 3 unknown 103999 Strg - - - striped greasy protein-coding 544974 Gm5793 EG544974 - X|X A7.3 predicted pseudogene 5793 pseudo 100042081 Gm12046 - - 11|11 A3.1 predicted gene 12046 pseudo 547263 Gm6029 EG547263 - 16|16 B2 predicted gene 6029 pseudo 11855 Mm.35059 NM_009706 ENSMUSG00000035133 Arhgap5 p190-B|p190B - 12 C1|12 22.16 cM Rho GTPase activating protein 5 protein-coding 111704 Iapt20 - - - intracisternal A particle, tumor specific 20 other 108168039 LOC108168039 - - 13 A3.1 60S ribosomal protein L27a-like pseudo 100043200 Mm.479516 NM_001165944 ENSMUSG00000094295 Olfr819 MOR265-2_p|Olfr819-ps1 - 10|10 D3 olfactory receptor 819 protein-coding 225027 Mm.292016 NM_146083 ENSMUSG00000024097 Srsf7 35kDa|9430065L19Rik|9G8|NX-96|Sfrs7 - 17|17 E3 serine/arginine-rich splicing factor 7 protein-coding 102642815 XR_876851 Gm38637 - - 17 C|17 predicted gene, 38637 ncRNA 100417050 Gm7645 EG665467|Gm14447 - 2|2 H4 proviral integration site 2 pseudogene pseudo 67181 Mm.41678 NM_026017 ENSMUSG00000018559 Ctdnep1 2610507E10Rik|Dullard - 11|11 B3 CTD nuclear envelope phosphatase 1 protein-coding 320844 Mm.449806 NM_177275 ENSMUSG00000032593 Amigo3 E430002N15Rik|ali3|mKIAA1851 - 9|9 F1 adhesion molecule with Ig like domain 3 protein-coding 102638815 XR_380187 Gm35291 - - 10 A4|10 predicted gene, 35291 ncRNA 108168056 Gm46395 - - 13 B3|13 predicted gene, 46395 pseudo 27762 Mm.56895 NM_138582 ENSMUSG00000007030 Vwa7 C6orf27|D17H6S56E-3|G7c|NG37 - 17 B1|17 18.55 cM von Willebrand factor A domain containing 7 protein-coding 227929 Mm.273905 NM_139200 ENSMUSG00000026832 Cytip A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp - 2|2 C1.1 cytohesin 1 interacting protein protein-coding 114532 Pgia14 - - - proteoglycan induced arthritis 14 unknown 12033 Mm.242379 NM_007530 ENSMUSG00000020650 Bcap29 AW208404|Bap29 - 12 A2|12 13.63 cM B cell receptor associated protein 29 protein-coding 102631796 XR_386551 Gm30042 - - 19 A|19 predicted gene, 30042 ncRNA 85212 D15Mit111 - - 15 13.02 cM DNA segment, Chr 15, Massachusetts Institute of Technology 111 unknown 319182 Mm.352273 NM_178197 ENSMUSG00000114456 Hist1h2bh H2b-221 - 13|13 A3.1 histone cluster 1, H2bh protein-coding 381724 Mm.380154 NM_198667 ENSMUSG00000072822 BC061212 - - 5|5 E3 cDNA sequence BC061212 protein-coding 100034857 Ofca3 - - - open field activity and conditioned avoidance 3 unknown 67841 Mm.41775 NM_026402 ENSMUSG00000022663 Atg3 2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96 - 16|16 B5 autophagy related 3 protein-coding 73321 Mm.443306 NR_045178 ENSMUSG00000086391 1700042O10Rik - - 11|11 A1 RIKEN cDNA 1700042O10 gene ncRNA 211488 Mm.297250 NM_001005419 ENSMUSG00000057134 Ado Gm237 - 10|10 B5.1 2-aminoethanethiol (cysteamine) dioxygenase protein-coding 72096 Mm.28631 NM_028095 ENSMUSG00000030960 Eef1akmt2 2010208K18Rik|Mettl10 - 7|7 F3 EEF1A lysine methyltransferase 2 protein-coding 71824 Mm.331353 NM_027939 ENSMUSG00000027973 1700006A11Rik - - 3|3 G1 RIKEN cDNA 1700006A11 gene protein-coding 74629 Mm.117687 NR_024323 ENSMUSG00000026736 4930426L09Rik - - 2|2 A3 RIKEN cDNA 4930426L09 gene ncRNA 328967 Mm.488098 NM_177828 ENSMUSG00000045094 Arhgef37 4933429F08Rik - 18|18 E1 Rho guanine nucleotide exchange factor (GEF) 37 protein-coding 61496 D7Mit205 - - 7 68.46 cM DNA segment, Chr 7, Massachusetts Institute of Technology 205 unknown 20233 sb - - - stub unknown 68876 Mm.276769 NM_026858 ENSMUSG00000025436 Atp23 1110068E08Rik|2410012H02Rik|Xrcc6bp1 - 10|10 D3 ATP23 metallopeptidase and ATP synthase assembly factor homolog protein-coding 623112 Stmn1-rs2 EG623112|Gm6393|Lag-rs2|Lap18rs2 - 17 E1.3|17 stathmin 1, related sequence 2 pseudo 27388 Mm.293591 NM_013782 ENSMUSG00000025495 Ptdss2 AI481134|AI988017|PSS2 - 7|7 F5 phosphatidylserine synthase 2 protein-coding 67933 Mm.127405 NM_026462 ENSMUSG00000020246 Hcfc2 1700129L13Rik|AU019838|fkls - 10|10 C1 host cell factor C2 protein-coding 108624 Iap5rb22 - - - intracisternal A-type particle, U5 region, SINE repeat b-22 other 100034831 Elpt - - - elevated leptin unknown 102467453 n-TAagc15 n-Ta15 - 5 B1|5 nuclear encoded tRNA alanine 15 (anticodon AGC) tRNA 102632446 Gm30517 - - 3|3 predicted gene, 30517 pseudo 105244746 XR_868417 Gm40302 - - 5 C1|5 predicted gene, 40302 ncRNA 493108 Hdlq18 - - 12 15.54 cM HDL QTL 18 unknown 58185 Mm.24045 NM_021384 ENSMUSG00000020641 Rsad2 2510004L01Rik|Vig1|cig5 - 12|12 A2 radical S-adenosyl methionine domain containing 2 protein-coding 102632881 XR_378120 Gm30843 - - 6 G2|6 predicted gene, 30843 ncRNA 110120519 LOC110120519 - - - VISTA enhancer mm1526 biological-region 102635464 XR_384794 Gm32796 - - 16 B2|16 predicted gene, 32796 ncRNA 210126 Mm.209385 NM_178665 ENSMUSG00000033306 Lpp 9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16 - 16|16 B1 LIM domain containing preferred translocation partner in lipoma protein-coding 102639146 XR_881312 Gm35527 - - 4 B3|4 predicted gene, 35527 ncRNA 108543 Ms13-16 Ms13-Ps16 - - minisatellite 13-16 detected by M13 phage probe other 78752 Mm.300317 NM_030165 ENSMUSG00000042042 Csgalnact2 4632415D10Rik|Galnact2 - 6|6 F1 chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 102637001 Mm.399301 XR_375312 4930529I22Rik - - 2|2 H3 RIKEN cDNA 4930529I22 gene ncRNA 75623 Mm.348017 NM_029368 ENSMUSG00000026049 Tex30 1700029F09Rik|3110030D08Rik - 1 C1.1|1 testis expressed 30 protein-coding 235416 Mm.295630 NM_199222 ENSMUSG00000056271 Lman1l BC020188|slamp - 9|9 B lectin, mannose-binding 1 like protein-coding 109280074 LOC109280074 Mm703 - - VISTA enhancer mm703 biological-region 102632347 XR_880497 Gm30443 - - 5 E5|5 predicted gene, 30443 ncRNA 69480 Mm.130002 NM_001033149 ENSMUSG00000042734 Ttc9 - - 12|12 D1 tetratricopeptide repeat domain 9 protein-coding 78002 E130101A01Rik - - 13|13 RIKEN cDNA E130101A01 gene protein-coding 102639139 XR_373713 Gm35522 - - 1 H3|1 predicted gene, 35522 ncRNA 75778 Mm.45092 NM_029431 ENSMUSG00000028145 Them4 2700077M13Rik|4921507I02Rik - 3|3 F2.1 thioesterase superfamily member 4 protein-coding 74362 Mm.55847 NM_028892 ENSMUSG00000027867 Spag17 4931427F14Rik|PF6|Spag17-ps - 3|3 F2.2 sperm associated antigen 17 protein-coding 13829 Mm.210863 NM_013514 ENSMUSG00000022099 Dmtn AI325486|Epb4.9|Epb49|dematin - 14 D2|14 36.32 cM dematin actin binding protein protein-coding 107589 Mm.33360 NM_139300 ENSMUSG00000022836 Mylk 9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK - 16|16 B3 myosin, light polypeptide kinase protein-coding 53052 L22SP6 - - - DNA segment, L22SP6 unknown 14854 Mm.252316 NM_008180 ENSMUSG00000027610 Gss AI314904|GS-A/GS-B|GSH-S - 2|2 H1 glutathione synthetase protein-coding 101055797 LOC101055797 - - 15 B1 PCNA-associated factor pseudogene pseudo 105244040 XR_865813 Gm39724 - - 1 H5|1 predicted gene, 39724 ncRNA 102637829 Gm34539 - - 2|2 predicted gene, 34539 pseudo 319954 Mm.445869 Egfros E230015J15Rik - 11|11 epidermal growth factor receptor, opposite strand unknown 26439 Mm.36878 NM_011964 ENSMUSG00000004542 Psg19 CGM7|Cea-4|Cea4 - 7 A3|7 9.31 cM pregnancy specific glycoprotein 19 protein-coding 27537 D15N3 43P19Sp6 - - DNA segment, Chr 15, NIH 3 unknown 102637903 XR_389657 Gm34599 Gm43208 - 3 A3|3 predicted gene, 34599 ncRNA 215274 Mm.218750 NM_153077 ENSMUSG00000046845 Il1f10 - - 2 A3|2 16.32 cM interleukin 1 family, member 10 protein-coding 72801 2810488O17Rik - - 1|1 RIKEN cDNA 2810488O17 gene protein-coding 544782 Mm.425676 Gm12620 - - 11 B2|11 poly(A) binding protein, cytoplasmic 4 pseudogene pseudo 74347 Mm.358759 NM_028883 ENSMUSG00000034105 Tldc1 4632415K11Rik|Kiaa1609 - 8|8 E1 TBC/LysM associated domain containing 1 protein-coding 105246766 XR_878696 Gm13822 - - 5 F|5 55.99 cM predicted gene 13822 ncRNA 100043051 Mm.480287 NM_001166840 ENSMUSG00000094542 Vmn1r149 Gm4194 - 7 A3|7 vomeronasal 1 receptor 149 protein-coding 637515 Mm.390402 NM_001039680 ENSMUSG00000070390 Nlrp1b Nalp1b - 11|11 B4 NLR family, pyrin domain containing 1B protein-coding 625881 Gm6633 - - 17|17 B1 predicted gene 6633 pseudo 102636286 XR_869809 Gm33394 - - 7 E1|7 predicted gene, 33394 ncRNA 237898 Mm.178524 NM_001029934 ENSMUSG00000000804 Usp32 2900074J03Rik|6430526O11Rik|AW045245 - 11|11 C ubiquitin specific peptidase 32 protein-coding 243451 Igkv4-86 Gm459|kb4 - 6|6 C1 immunoglobulin kappa variable 4-86 other 100043022 Gm9774 - - 3|3 F1 adhesion regulating molecule 1 pseudogene pseudo 97663 C86195 - - - expressed sequence C86195 unknown 29817 Mm.233470 NM_008048 ENSMUSG00000036256 Igfbp7 AGM|Fstl2|Mac25 - 5|5 C3.3 insulin-like growth factor binding protein 7 protein-coding 225888 Mm.278578 NM_144871 ENSMUSG00000045098 Kmt5b AA117471|C630029K18Rik|Suv4-20h1|Suv420h1 - 19|19 A lysine methyltransferase 5B protein-coding 27500 B40B5T - - - DNA segment, B40B5T unknown 105247277 XR_882280 ENSMUSG00000086757 LOC105247277 - - X A3.3 uncharacterized LOC105247277 ncRNA 667911 Gm8876 EG667911 - X|X C1 predicted gene 8876 pseudo 321020 Mm.377882 NM_177316 ENSMUSG00000071275 Fpr-rs6 - - 17|17 A3.2 formyl peptide receptor, related sequence 6 protein-coding 545716 Gm13135 - - 4|4 E1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene pseudo 105247073 Gm42246 - - 5|5 predicted gene, 42246 ncRNA 100035973 Etax1 - - - ethanol induced ataxia 1 unknown 258866 Mm.377726 NM_146866 ENSMUSG00000050603 Olfr1008 MOR187-3 - 2|2 D olfactory receptor 1008 protein-coding 359908 DXMgc73 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 73 unknown 108168282 XR_001781890 LOC108168282 - - 16 B2 uncharacterized LOC108168282 ncRNA 100039820 Gm16020 EG639823|Gm16417 - 5|5 G2 ribosomal protein S28 pseudogene pseudo 692143 Igkv13-80-1 - - 6|6 C1 immunoglobulin kappa chain variable 13-80-1 pseudo 100034936 Vtbt15 - - 13 21.73 cM vertebral trabecular bone trait 15 unknown 102638668 Gm35178 - - 9|9 predicted gene, 35178 pseudo 622306 XM_886734 ENSMUSG00000096798 Gm6309 EG622306 - 5|5 G3 predicted gene 6309 protein-coding 56015 Mm.377126 NM_019486 ENSMUSG00000046450 Olfr71 MOR262-4|mOR17 - 4|4 B1 olfactory receptor 71 protein-coding 76882 Mm.385188 6430500D05Rik - - 3|3 RIKEN cDNA 6430500D05 gene protein-coding 108168955 LOC108168955 - - 4 B3 60S ribosomal protein L27 pseudogene pseudo 258006 Olfr718-ps1 MOR0-10P - 5|5 G2 olfactory receptor 718, pseudogene 1 pseudo 492946 Alaa3 - - 8 33.06 cM alopecia areata 3 unknown 777779 Ighv5-5 - - 12|12 F1 immunoglobulin heavy variable V5-5 pseudo 19410 Rare8 - - - retinoic acid response element 8 other 108168703 LOC108168703 - - - non-histone chromosomal protein HMG-14 pseudogene pseudo 101010 AW742247 - - - expressed sequence AW742247 unknown 108532 Ms13-6 Ms13-Ps6 - - minisatellite 13-6 detected by M13 phage probe other 74612 4833410I11Rik - - - RIKEN cDNA 4833410I11 gene protein-coding 100417727 Gm18788 - - 15|15 D1 predicted gene, 18788 pseudo 100417038 Gm18378 - - 9|9 E3.2 methionyl aminopeptidase 1 pseudogene pseudo 100036134 Lmr7 - - 17 2.68 cM leishmaniasis resistance 7 unknown 105245966 Gm41337 - - 15|15 predicted gene, 41337 ncRNA 61987 D9Mit307 - - 9 45.34 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 307 unknown 102634248 Gm28581 - - 7|7 predicted gene 28581 pseudo 67340 Mm.386790 NR_033786 ENSMUSG00000101912 1700052I22Rik - - 12|12 C3 RIKEN cDNA 1700052I22 gene ncRNA 30962 Mm.45874 NM_021291 ENSMUSG00000030492 Slc7a9 CSNU3 - 7|7 B2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 9 protein-coding 105245712 Gm41120 - - 14|14 predicted gene, 41120 ncRNA 80908 Mm.160386 NM_030718 ENSMUSG00000015787 Abo NAGAT - 2|2 A3 ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase) protein-coding 676037 Gm9662 - - 9|9 A1 non-POU-domain-containing, octamer binding protein pseudogene pseudo 228876 Mm.26316 NM_178411 ENSMUSG00000017667 Zfp334 D2Ertd535e - 2|2 H3 zinc finger protein 334 protein-coding 100041373 Cfap47 Chdc2|Gm3297 - X B|X cilia and flagella associated protein 47 protein-coding 100416911 Gm18314 - - 13|13 C1 SCAN domain containing 3 pseudogene pseudo 218639 Mm.79837 NM_172595 ENSMUSG00000042348 Arl15 A430036I03|Arfrp2|C230032K13Rik - 13|13 D2.2 ADP-ribosylation factor-like 15 protein-coding 104339 O - - - organizer, high variegation protein-coding 223775 Mm.400129 NM_145478 ENSMUSG00000035828 Pim3 BC026639|Kid1 - 15|15 E3 proviral integration site 3 protein-coding 100294507 Gm17807 - - 12|12 F2 ATPase inhibitory factor 1 pseudogene pseudo 228151 Mm.17636 NM_001081664 ENSMUSG00000075217 4833423E24Rik Fads2p1|Gm113 - 2|2 D RIKEN cDNA 4833423E24 gene protein-coding 16231 In(10)42Rk In42Rk - - inversion, Chr 10, Roderick 42 other 105246450 Gm41739 - - 18|18 predicted gene, 41739 ncRNA 100418110 Gm19004 - - 5|5 B3 polymerase (RNA) III (DNA directed) polypeptide F pseudogene pseudo 14297 Mm.7319 NM_008044 ENSMUSG00000059363 Fxn FA|FARR|Frda|X25 - 19|19 B frataxin protein-coding 170792 Ptz1a - - 2 34.9 cM pentylenetetrazol induced seizure susceptibility 1a unknown 78258 Mm.78368 NM_030071 ENSMUSG00000071890 Mroh9 4921528O07Rik|Armc11 - 1|1 H2.1 maestro heat-like repeat family member 9 protein-coding 108167725 XM_017313765 Gm46156 - - 1 E4|1 predicted gene, 46156 protein-coding 381680 Mm.156846 NM_001013773 ENSMUSG00000047592 Nxpe5 - - 5|5 G2 neurexophilin and PC-esterase domain family, member 5 protein-coding 320268 Mm.435974 NR_155502 B930095G15Rik - - 14|14 E5 RIKEN cDNA B930095G15 gene ncRNA 105245404 Gm40866 - - 12|12 predicted gene, 40866 ncRNA 85169 D11Mit42 - - 11 78.7 cM DNA segment, Chr 11, Massachusetts Institute of Technology 42 unknown 102638206 Gm12621 - - 11 B2|11 37.81 cM predicted gene 12621 pseudo 105246100 XR_876013 Gm41443 - - 16 B2|16 predicted gene, 41443 ncRNA 105246990 Gm42178 - - X|X predicted gene, 42178 ncRNA 20745 Mm.379020 NM_009262 ENSMUSG00000056222 Spock1 Spock|Ticn1|testican - 13|13 B1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1 protein-coding 100417528 Gm18667 - - 1|1 E4 PAP associated domain containing 4 pseudogene pseudo 102633226 XR_383533 Gm31107 - - 14 D1|14 predicted gene, 31107 ncRNA 76590 Mm.437061 2510010E17Rik - - 14|14 RIKEN cDNA 2510010E17 gene protein-coding 666815 Gm8305 EG666815 - 14 A1|14 ribosomal protein L3 pseudogene pseudo 382034 Mm.334856 NM_198671 ENSMUSG00000031822 Gse1 2210013I18Rik|mKIAA0182 - 8|8 E1 genetic suppressor element 1, coiled-coil protein protein-coding 100188961 Gm14659 - - X|X A7.1 predicted gene 14659 pseudo 55985 Mm.10116 NM_018866 ENSMUSG00000023078 Cxcl13 4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13 - 5|5 E3 chemokine (C-X-C motif) ligand 13 protein-coding 19491 Rb(16.17)32Lub Rb32Lub - - Robertsonian translocation, Chr 16 and 17, Lubeck 32 other 100041032 XM_006535305 ENSMUSG00000096259 Gm3106 - - 5 E3|5 predicted gene 3106 protein-coding 270672 Mm.386889 NM_001163085 ENSMUSG00000031303 Map3k15 BC031147|MEKK15 - X|X F4 mitogen-activated protein kinase kinase kinase 15 protein-coding 105243090 Mm.440541 NM_001347555 ENSMUSG00000073786 LOC105243090 - - 7 F5 keratin-associated protein 5-5-like protein-coding 21243 T(6;8)2Ad T2Ad - - reciprocal translocation, Chr 6 and 8, Adler 2 other 75304 Mm.340776 NM_001163728 4930563E22Rik - - 11|11 B4 RIKEN cDNA 4930563E22 gene protein-coding 442836 Mm.123337 A530053M12Rik - - 1|1 E2.1 RIKEN cDNA A530053M12 gene protein-coding 105243720 XR_878235 Gm39534 - - X E3|X predicted gene, 39534 ncRNA 100125292 Chldq9 - - - cholesterol and HDL QTL 9 unknown 434148 Gm5587 EG434148 - 7|7 A3 GrpE-like 2, mitochondrial pseudogene pseudo 105246654 XR_878356 Gm41912 - - 1 D|1 predicted gene, 41912 ncRNA 102639421 XR_373353 Gm35741 - - 1 B|1 predicted gene, 35741 ncRNA 76621 1700106J12Rik - - 19|19 RIKEN cDNA 1700106J12 gene protein-coding 16421 Mm.58 NM_013566 ENSMUSG00000001281 Itgb7 Ly69 - 15 F3|15 57.39 cM integrin beta 7 protein-coding 102635522 XR_873397 ENSMUSG00000112959 Gm32834 - - 13 A5|13 predicted gene, 32834 ncRNA 102632044 XR_389110 Gm30219 - - 11 E2|11 predicted gene, 30219 ncRNA 73899 Mm.393239 XR_168585 LOC73899 - - 19|19 D2 uncharacterized LOC73899 unknown 105244178 XR_866349 Gm39831 - - 2 C1.1|2 predicted gene, 39831 ncRNA 100416700 Gm18207 - - 7|7 A3 cysteine rich protein 2 pseudogene pseudo 17745 TrnV - - - tRNA tRNA 100503857 Gm13489 - - 2|2 28.38 cM predicted gene 13489 pseudo 20351 Mm.439752 NM_013658 ENSMUSG00000028064 Sema4a AI132332|SemB|Semab - 3|3 F1 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A protein-coding 100035749 Radpf3 - - 6 59.32 cM radiation pulmonary fibrosis 3 unknown 100042605 Mm.332809 NR_040424 ENSMUSG00000104529 Rbakdn Gm3925 - 5 G2|5 RB-associated KRAB zinc finger downstream neighbor (non-protein coding) ncRNA 320911 Mm.209650 D830024F11Rik - - 3|3 RIKEN cDNA D830024F11 gene protein-coding 102637770 Gm34497 - - 5|5 predicted gene, 34497 ncRNA 232533 Mm.322121 NM_172734 ENSMUSG00000001630 Stk38l 4930473A22Rik|Ndr2|Ndr54 - 6|6 G3 serine/threonine kinase 38 like protein-coding 67492 Mm.272772 NM_001081317 ENSMUSG00000042213 Zfand4 Anubl1 - 6|6 E3 zinc finger, AN1-type domain 4 protein-coding 100526509 NR_037291 ENSMUSG00000092652 Mir3104 mir-3104|mmu-mir-3104 - 7 F5|7 87.48 cM microRNA 3104 ncRNA 75825 Mm.270999 4930537H20Rik - - 3|3 RIKEN cDNA 4930537H20 gene protein-coding 100418231 Gm19087 - - 1|1 G1 ARP10 actin-related protein 10 homolog pseudogene pseudo 105243262 XR_879128 Gm39231 Gm45362 - 8 D1|8 predicted gene, 39231 ncRNA 102631965 Mm.438270 Gm26574 - - 1|1 predicted gene, 26574 ncRNA 671994 Hspd1-ps1 Gm9546 - 8|8 A4 heat shock protein 1 (chaperonin), pseudogene 1 pseudo 21175 T(4;12)47H T47H - - reciprocal translocation, Chr 4 and 12, Harwell 47 other 545389 Mm.269991 NM_001024722 ENSMUSG00000057335 Cep170 4933426L22Rik|A330004A13Rik|AI195353 - 1|1 H4 centrosomal protein 170 protein-coding 97121 T25627 - - - expressed sequence T25627 unknown 329416 Mm.90047 NM_181547 ENSMUSG00000034738 Nostrin Daip2|mDaIP2 - 2|2 C2 nitric oxide synthase trafficker protein-coding 57912 Mm.28189 NM_172395 ENSMUSG00000046722 Cdc42se1 1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1 - 3|3 F2.1 CDC42 small effector 1 protein-coding 61224 D1Mit229 - - 1 56.79 cM DNA segment, Chr 1, Massachusetts Institute of Technology 229 unknown 102637158 Gm34042 - - 4|4 predicted gene, 34042 protein-coding 100041113 Gm3145 - - 17|17 A1 predicted gene 3145 pseudo 76267 Mm.30158 NM_146094 ENSMUSG00000010663 Fads1 0710001O03Rik|A930006B21Rik|AI317215|DSD - 19|19 A fatty acid desaturase 1 protein-coding 112197 Afpq4 - - - abdominal fat percent QTL 4 unknown 105245401 XR_873198 Gm40863 - - 13 A3.2|13 predicted gene, 40863 ncRNA 102637598 XR_378536 Gm34365 - - 7 F3|7 predicted gene, 34365 ncRNA 66198 Mm.180200 NM_025416 ENSMUSG00000028148 Them5 1110007B02Rik|1110038F21Rik - 3|3 F2.1 thioesterase superfamily member 5 protein-coding 75942 Mm.50087 NR_029445 ENSMUSG00000029044 4930584F24Rik 1700001J09Rik|4930522C06Rik - 5|5 B1 RIKEN cDNA 4930584F24 gene ncRNA 102633606 Gm31390 - - 13|13 predicted gene, 31390 ncRNA 109280049 LOC109280049 Mm417 - - VISTA enhancer mm417 biological-region 102635300 Mm.126757 XR_378619 Gm20501 - - 7 F5|7 87.42 cM predicted gene 20501 ncRNA 667445 Gm8637 EG667445 - 8|8 D1 predicted gene 8637 pseudo 100035904 Pbwg19 - - - postnatal body weight growth 19 unknown 14762 Mm.12890 NM_008159 ENSMUSG00000035148 Gpr33 - - 12|12 C1 G protein-coupled receptor 33 protein-coding 668113 NM_001177429 Gm13694 - - 2|2 D CWC22 spliceosome-associated protein homolog pseudogene pseudo 14707 Mm.140804 NM_010318 ENSMUSG00000068523 Gng5 G(y)5 - 3|3 H2 guanine nucleotide binding protein (G protein), gamma 5 protein-coding 78078 9230108I15Rik - - 2|2 H4 RIKEN cDNA 9230108I15 gene protein-coding 231646 Mm.238285 NM_146163 ENSMUSG00000066952 Myo1h 4631401O15Rik - 5|5 F myosin 1H protein-coding 102635623 Gm32911 - - 8|8 predicted gene, 32911 ncRNA 225155 Gm4834 - - 18|18 A1 kinectin 1 pseudogene pseudo 100628619 NR_039574 ENSMUSG00000093315 Mir5114 mmu-mir-5114|mu-mir-5114 - 19 C3|19 37.98 cM microRNA 5114 ncRNA 105246493 XR_877565 Gm41778 - - 18 E3|18 predicted gene, 41778 ncRNA 258527 Mm.271440 NM_146534 ENSMUSG00000045474 Olfr1368 MOR256-15 - 13|13 A2 olfactory receptor 1368 protein-coding 14884 Mm.22700 NM_008186 ENSMUSG00000006599 Gtf2h1 62kDa|AW743425|AW822074|BTF2 p62|C77871|p62 - 7|7 B3 general transcription factor II H, polypeptide 1 protein-coding 62745 D17Mit214 - - - DNA segment, Chr 17, Massachusetts Institute of Technology 214 unknown 276829 Mm.46732 NM_177776 ENSMUSG00000045667 Smtnl2 D130058I21Rik - 11|11 B4 smoothelin-like 2 protein-coding 22700 Mm.437934 NM_009555 ENSMUSG00000002617 Zfp40 CTfin12|NTfin12|Zfp-40 - 17 A3.3|17 11.56 cM zinc finger protein 40 protein-coding 242316 Mm.302555 NM_013526 ENSMUSG00000051279 Gdf6 BMP-13|BMP13|GDF16 - 4|4 A1 growth differentiation factor 6 protein-coding 57891 Mm.143781 AA589522 - - - EST AA589522 protein-coding 54368 Mm.12897 NM_018762 ENSMUSG00000030054 Gp9 Cd42|GPIX - 6 D1|6 39.13 cM glycoprotein 9 (platelet) protein-coding 116767 Cocrb14 - - 15 30.37 cM cocaine related behavior 14 unknown 53702 D3Tu33 D17Tu33 - - DNA segment, Chr 3, Tubingen 33 unknown 108169198 Gm44431 - - 6 F3|6 60S ribosomal protein L32 pseudogene pseudo 81497 Mm.484231 NR_004051 Btnl5-ps Btnl5|Gm15330|NG12 - 17 B1|17 18.08 cM butyrophilin-like 5, pseudogene pseudo 319878 Mm.31914 9630025H16Rik - - 3|3 RIKEN cDNA 9630025H16 gene protein-coding 319236 Mm.425502 NM_175677 ENSMUSG00000057143 Trim12c 9230105E10Rik|Trim12-2 - 7|7 E3 tripartite motif-containing 12C protein-coding 333182 Mm.29625 NM_183405 ENSMUSG00000051811 Cox6b2 1700067P11Rik|BC048670|COXVIB2 - 7|7 A1 cytochrome c oxidase subunit VIb polypeptide 2 protein-coding 110921 Atp1b3-rs2 - - - ATPase, Na+/K+ transporting, beta 3 polypeptide, related sequence 2 protein-coding 100038718 Mm.414347 NR_033462 Gm10494 - - 17 E3|17 predicted gene 10494 ncRNA 17132 Mm.275549 NM_001025577 ENSMUSG00000055435 Maf 2810401A20Rik|A230108G15Rik|AW047063|c-maf - 8 E1|8 62.61 cM avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 100042214 Gm3726 - - 7|7 A1 predicted gene 3726 pseudo 108168493 XR_001782868 Gm14355 - - X A1.1|X 1.67 cM predicted gene 14355 ncRNA 13819 Mm.1415 NM_010137 ENSMUSG00000024140 Epas1 HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73 - 17|17 E4 endothelial PAS domain protein 1 protein-coding 100042507 Gm3875 - - 19 C3|19 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 pseudogene pseudo 100126829 Pif - - - proteolysis-inducing factor protein-coding 102466795 NR_106016 ENSMUSG00000098558 Mir7049 Gm27277|mmu-mir-7049 - 7|7 B1 microRNA 7049 ncRNA 70005 Mm.276881 NM_027285 Znf41-ps 1700029I01Rik - 4|4 E1 ZNF41, pseudogene pseudo 105245363 XR_873164 Gm40831 - - 13 A3.1|13 predicted gene, 40831 ncRNA 109280096 LOC109280096 Mm916 - - VISTA enhancer mm916 biological-region 74662 Mm.483401 NR_004448 ENSMUSG00000082843 4930448K20Rik 1700009K09Rik - 4|4 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 93917 D16Jhu55 378L16.T7 - - DNA segment, Chr 16, Johns Hopkins University 55 unknown 107687 Tmtr - - - tracheal mucociliary transport rate protein-coding 654823 Mm.403178 B930094E09Rik - - 18|18 B1 RIKEN cDNA B930094E09 gene unknown 102635516 XR_381897 Gm32830 - - 12 F1|12 predicted gene, 32830 ncRNA 194604 NM_001310472 ENSMUSG00000071179 Serpina16 Gm46 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 16 protein-coding 235952 Igkv4-57 Gm189|ap4 - 6|6 C1 immunoglobulin kappa variable 4-57 other 100418456 Gm19223 - - 14|14 E4 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 pseudogene pseudo 28040 Mm.44228 NM_138594 ENSMUSG00000030347 D6Wsu163e C12orf4 - 6 F3|6 61.92 cM DNA segment, Chr 6, Wayne State University 163, expressed protein-coding 102633740 XR_865670 Gm31493 - - 1 H1|1 predicted gene, 31493 protein-coding 12915 Mm.4068 NM_017406 ENSMUSG00000015461 Atf6b AA617266|ATF6beta|Creb-rp|Crebl1 - 17 B1|17 18.22 cM activating transcription factor 6 beta protein-coding 61778 D3Mit258 - - 3 66.69 cM DNA segment, Chr 3, Massachusetts Institute of Technology 258 unknown 102639068 XR_001781618 Gm35470 - - 15 D1|15 predicted gene, 35470 ncRNA 207615 Mm.284654 NM_172445 ENSMUSG00000021147 Wdr37 - - 13|13 A1 WD repeat domain 37 protein-coding 619688 Gm6092 EG619688 - X|X C3 adenylate kinase 1 pseudogene pseudo 100417761 Gm18811 - - 14|14 C1 poly(A) binding protein, cytoplasmic 2 pseudogene pseudo 64658 Mm.87062 NM_025578 ENSMUSG00000014551 Mrps25 2810429N01Rik|Rpms25 - 6|6 D1 mitochondrial ribosomal protein S25 protein-coding 53168 6c13f9-1092 - - - DNA segment, 6c13f9-1092 unknown 102636418 XR_882327 Gm21739 - - Y B|Y predicted gene, 21739 ncRNA 102467597 n-TSgct2 n-Ts16 - 13 A3.1|13 nuclear encoded tRNA serine 2 (anticodon GCT) tRNA 105245637 XR_873966 Gm41065 - - 13 D2.2|13 predicted gene, 41065 ncRNA 100416821 Gm18279 - - 18|18 E4 predicted gene, 18279 pseudo 105244368 XR_867012 Gm39991 - - 2 H3|2 predicted gene, 39991 ncRNA 102637841 XR_375935 Gm34548 - - 3 F2.2|3 predicted gene, 34548 ncRNA 71565 9030418E23Rik - - 2|2 RIKEN cDNA 9030418E23 gene protein-coding 100502745 Mm.440061 NR_045298 ENSMUSG00000102014 2900009J06Rik - - 1|1 E3 RIKEN cDNA 2900009J06 gene ncRNA 61698 D6Mit223 - - 6 21.81 cM DNA segment, Chr 6, Massachusetts Institute of Technology 223 unknown 665474 Gm7651 EG665474 - 7 A1|7 zinc finger protein pseudogene pseudo 216846 Mm.28774 NM_172560 ENSMUSG00000032782 Cntrob 9830165K03Rik|Lip8|Nip2 - 11|11 B3 centrobin, centrosomal BRCA2 interacting protein protein-coding 666866 Gm14701 EG666866 - X|X A7.1 predicted gene 14701 protein-coding 110120394 LOC110120394 - - - VISTA enhancer mm984 biological-region 21155 T(2;9)11H T11H - - reciprocal translocation, Chr 2 and 9, Harwell 11 other 100418077 Gm18985 - - 5|5 A1 general transcription factor IIIC, polypeptide 3 pseudogene pseudo 109611592 LOC109611592 - - - Runx2 P2 promoter biological-region 217258 Mm.344148 NM_153145 ENSMUSG00000041828 Abca8a - - 11|11 E1 ATP-binding cassette, sub-family A (ABC1), member 8a protein-coding 16661 Mm.22662 NM_010660 ENSMUSG00000019761 Krt10 D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10 - 11 D|11 62.92 cM keratin 10 protein-coding 61174 D16Mit88 - - 16 9.23 cM DNA segment, Chr 16, Massachusetts Institute of Technology 88 unknown 66059 Mm.177991 NM_025327 ENSMUSG00000042747 Krtcap2 0610010I12Rik|Kcp2 - 3|3 F1 keratinocyte associated protein 2 protein-coding 112097 Bglq3 - - 3 76.22 cM body growth late QTL 3 unknown 71774 Mm.274370 NM_027917 ENSMUSG00000018387 Shroom1 Apx|Shrm1 - 11|11 B1.3 shroom family member 1 protein-coding 629170 Gm14162 - - 2|2 H1 high mobility group box 1-like pseudogene pseudo 383956 Gm5285 EG383956 - 3|3 H4 sperm motility kinase 3A pseudogene pseudo 320385 D330005D02Rik - - 16|16 RIKEN cDNA D330005D02 gene protein-coding 16017 Mm.342177 Ighg1 IgG1|Igh-4|VH7183 - 12 F1|12 62.1 cM immunoglobulin heavy constant gamma 1 (G1m marker) other 100416108 Gm15974 - - 17|17 E1.2 peroxiredoxin 2 pseudogene pseudo 72906 2900042A17Rik - - 19|19 RIKEN cDNA 2900042A17 gene protein-coding 100416742 Gm18221 - - 6|6 A1 predicted gene, 18221 pseudo 100043729 Mm.303994 XR_374962 Gm14010 - - 2|2 F1 predicted gene 14010 ncRNA 54167 Mm.42044 NM_017480 ENSMUSG00000026009 Icos AILIM|CCLP|CRP-1|H4|Ly115 - 1 C2|1 30.6 cM inducible T cell co-stimulator protein-coding 107305 Mm.19091 NM_181403 ENSMUSG00000048832 Vps37c 5730409F24Rik|AU042646 - 19|19 A vacuolar protein sorting 37C protein-coding 110209 Tctex10 Tctex-10 - - t-complex testis-expressed 10 protein-coding 266459 Mm.312138 NR_003647 Gm5039 EG266459 - 12|12 D2 eukaryotic translation initiation factor 1A pseudogene pseudo 217265 Mm.41942 NM_147219 ENSMUSG00000018800 Abca5 ABC13|B930033A02Rik|mKIAA1888 - 11|11 E1 ATP-binding cassette, sub-family A (ABC1), member 5 protein-coding 100043644 Mm.362377 NR_028023 Gm4566 - - 17 E1.3|17 ubiquitin specific peptidase 16 pseudogene pseudo 100035835 Arigm6 - - - anti-RBC IgM antibodies 6 unknown 61704 D5Mit328 - - 5 79.78 cM DNA segment, Chr 5, Massachusetts Institute of Technology 328 unknown 103356 AU022054 - - - expressed sequence AU022054 unknown 223455 Mm.272185 NM_172606 ENSMUSG00000039100 March6 3830408G03|F830029L24Rik|mKIAA0597 - 15|15 B2 membrane-associated ring finger (C3HC4) 6 protein-coding 71416 Mm.415500 NR_103550 5430425K12Rik - - 13|13 C3 RIKEN cDNA 5430425K12 gene ncRNA 100126088 Mtgq5 Bwnd6wk1 - - multiple trait growth QTL 5 unknown 100417723 Gm18784 - - 17|17 B1 WNK lysine deficient protein kinase 1 pseudogene pseudo 100035681 Bw25 - - - body weight QTL 25 unknown 105932 Mm.309425 AI931719 - - - expressed sequence AI931719 unknown 111949 Iapls3-53 - - - intracisternal A particle, lymphocyte specific, probe 3-53 other 105246603 XR_877941 Gm41872 - - 19 D2|19 predicted gene, 41872 ncRNA 641368 Mm.422380 NM_001040055 ENSMUSG00000074593 Spint5 Gm14316 - 2|2 H3 serine protease inhibitor, Kunitz type 5 protein-coding 12260 Mm.2570 NM_009777 ENSMUSG00000036905 C1qb - - 4 D3|4 69.05 cM complement component 1, q subcomponent, beta polypeptide protein-coding 666799 Gm8296 EG666799 - 1 C1.1|1 chromobox protein homolog 3 pseudogene pseudo 170439 Mm.314113 NM_130450 ENSMUSG00000041220 Elovl6 C77826|FAE|LCE - 3|3 G3 ELOVL family member 6, elongation of long chain fatty acids (yeast) protein-coding 432701 Ighv6-7 EG432701|Gm5438 - 12|12 F2 immunoglobulin heavy variable V6-7 other 735265 NR_030484 ENSMUSG00000105814 Mir703 Mirn703|mir-703|mmu-mir-703 - 5 E3|5 microRNA 703 ncRNA 258656 Mm.377619 NM_146662 ENSMUSG00000059429 Olfr365 MOR138-1 - 2|2 B olfactory receptor 365 protein-coding 100039753 Mm.291725 NM_001017394 ENSMUSG00000101053 Gm20815 - - Y|Y A1 predicted gene, 20815 protein-coding 61711 D5Mit315 - - 5 52.89 cM DNA segment, Chr 5, Massachusetts Institute of Technology 315 unknown 97544 C81272 - - - expressed sequence C81272 unknown 100036042 Mfat2 - - - M-line adipose tissue, white adipose tissue 2 unknown 100502932 Mm.417207 NR_040365 ENSMUSG00000086995 Gm13544 - - 2 C1.1|2 33.05 cM predicted gene 13544 ncRNA 100653389 Mm.261808 NR_132106 ENSMUSG00000097418 Mir155hg Bic|Gm26667 - 16 C3.3|16 Mir155 host gene (non-protein coding) ncRNA 111387 Mtv56 - - - mammary tumor virus locus 56 other 100416397 Gm11416 - - 11|11 B5 predicted gene 11416 pseudo 102641000 XR_388733 Gm36926 - - 11 B3|11 predicted gene, 36926 ncRNA 112085 Bpq6 - - 15 17.41 cM blood pressure QTL 6 unknown 67867 Mm.31247 NM_027413 ENSMUSG00000030556 Lrrc28 1300004K21Rik|2210012C09Rik|2310058O11Rik - 7|7 C leucine rich repeat containing 28 protein-coding 100040528 Defa-ps15 - - 8|8 A1.3 defensin, alpha, pseudogene 15 pseudo 100416112 Gm15916 - - 14|14 A2 aurora kinase A pseudogene pseudo 100038682 Mm.398331 Gm10475 - - - predicted gene 10475 unknown 671636 Gm14660 - - X|X A6 within bgcn homolog pseudogene pseudo 100416704 Gm18208 - - 7|7 B3 zinc finger protein 120 pseudogene pseudo 723921 NR_029775 ENSMUSG00000065573 Mir350 Mirn350|mir-350|mmu-mir-350 - 1|1 H4 microRNA 350 ncRNA 235599 Mm.71039 NM_175486 ENSMUSG00000037977 6430571L13Rik - - 9|9 F1 RIKEN cDNA 6430571L13 gene protein-coding 60875 D6Mit95 - - 6 30.54 cM DNA segment, Chr 6, Massachusetts Institute of Technology 95 unknown 12190 Mm.236256 NM_009765 ENSMUSG00000041147 Brca2 Fancd1|RAB163 - 5 G3|5 89.52 cM breast cancer 2, early onset protein-coding 625403 Gm13998 - - 2|2 E5 predicted gene 13998 pseudo 627924 Gm6811 EG627924 - 17|17 A3.2 sperm motility kinase Y pseudogene pseudo 102635366 XR_001780870 Gm32724 - - 13 A3.1|13 predicted gene, 32724 ncRNA 108608 Iap3rc19 - - - intracisternal A-type particle, U3 region, SINE repeat c-19 other 319297 A630033J11Rik - - 7|7 E2 RIKEN cDNA A630033J11 gene protein-coding 100035407 Dbm2 - - - diabetes modifier 2 unknown 102632170 XR_001782277 Gm30316 - - 17 B1|17 predicted gene, 30316 ncRNA 102631841 Mm.489019 XR_386774 Gm26629 - - 19 D1|19 predicted gene, 26629 ncRNA 14089 Mm.41816 NM_007986 ENSMUSG00000000392 Fap SIMP - 2 C1.3|2 35.85 cM fibroblast activation protein protein-coding 629655 Gm11448 - - 2|2 H2 M phase phosphoprotein 6 pseudogene pseudo 12972 Mm.374855 NM_009968 ENSMUSG00000028199 Cryz Sez9 - 3|3 H4 crystallin, zeta protein-coding 111375 Mtv7 Mls|Mls-1|Mls1|Mtv-10|Mtv-19|Mtv-22|Mtv-7|Pyv - - mammary tumor virus locus 7 other 170662 Lcho2 - - - liver cholesterol 2 unknown 108167679 XR_001779270 Gm46128 - - 9 F1|9 predicted gene, 46128 ncRNA 433693 Mm.389532 NM_026019 ENSMUSG00000028291 Akirin2 2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2 - 4|4 A5 akirin 2 protein-coding 20918 Mm.13886 NM_011508 ENSMUSG00000035530 Eif1 Sui1-rs1 - 11|11 D eukaryotic translation initiation factor 1 protein-coding 100302730 Mm.482358 NR_028359 5830417I10Rik 3632445O20Rik|AA387005 - 3|3 F1 gon-4-like pseudogene pseudo 72459 Mm.2152 NM_028242 ENSMUSG00000067873 Htatsf1 1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1 - X|X A6 HIV TAT specific factor 1 protein-coding 78406 2900041H08Rik - - 16|16 RIKEN cDNA 2900041H08 gene protein-coding 75539 NR_126477 1700022H01Rik - - 10|10 B4 RIKEN cDNA 1700022H01 gene ncRNA 100035786 Tesq1 - - - testis weight QTL 1 unknown 23993 Mm.251227 NM_011872 ENSMUSG00000030713 Klk7 Prss6|SCCE - 7 B3|7 28.27 cM kallikrein related-peptidase 7 (chymotryptic, stratum corneum) protein-coding 258772 Mm.391459 NM_146776 ENSMUSG00000044897 Olfr821 MOR109-1 - 10|10 D3 olfactory receptor 821 protein-coding 74658 Mm.372753 4930445G23Rik - - 6|6 RIKEN cDNA 4930445G23 gene protein-coding 102634501 XR_383267 Gm32068 - - 14 A3|14 predicted gene, 32068 ncRNA 665690 Gm11285 - - 13|13 A3.1 predicted gene 11285 pseudo 434778 Mm.23411 NM_001034059 ENSMUSG00000073207 Ccdc160 6330534C20Rik - X|X A5 coiled-coil domain containing 160 protein-coding 109279947 LOC109279947 Mm402 - - VISTA enhancer mm402 biological-region 109279848 LOC109279848 Mm3 - - VISTA enhancer mm3 biological-region 93884 Mm.196700 NM_053138 ENSMUSG00000047307 Pcdhb13 Pcdbh6|PcdhbM - 18|18 B3 protocadherin beta 13 protein-coding 104146 Cgct Cad - 4|4 congenital cataract protein-coding 75010 Mm.85064 NM_029141 ENSMUSG00000014529 Tmbim7 4930403J02Rik|4930500J03Rik|4930511M11Rik|Lfg5|Lgf5|Tmbim1b - 5|5 A1 transmembrane BAX inhibitor motif containing 7 protein-coding 111676 Mpmv3 Mpmv-3 - - modified polytropic murine leukemia virus 3 other 62296 D19Mit73 - - 19 19.06 cM DNA segment, Chr 19, Massachusetts Institute of Technology 73 unknown 105245134 Mm.440236 XR_871585 Gm40627 - - 10 B1|10 predicted gene, 40627 ncRNA 257925 Mm.377304 NM_001011764 Olfr106-ps MOR250-6|Olfr106 - 17|17 B1 olfactory receptor 106, pseudogene pseudo 105244117 XR_866128 Gm13524 - - 2 B|2 22.09 cM predicted gene 13524 ncRNA 434724 XR_386864 Gm14367 - - X A1.1|X predicted gene 14367 pseudo 100416508 Gm18136 - - 8|8 B2 mannosidase 2, alpha 2 pseudogene pseudo 100035156 Sphsr2 - - 11 40.59 cM spermatocyte heat stress resistance 2 unknown 14840 Mm.272306 NM_010352 ENSMUSG00000030206 Gsg1 - - 6 G1|6 66.07 cM germ cell associated 1 protein-coding 21940 Mm.367714 NM_001033126 ENSMUSG00000030336 Cd27 S152|Tnfrsf7|Tp55 - 6 F2|6 59.32 cM CD27 antigen protein-coding 100526555 NR_037270 ENSMUSG00000104741 Mir3087 mir-3087|mmu-mir-3087 - 2 A3|2 17.26 cM microRNA 3087 ncRNA 22602 YB10 - - - Y-specific B10-derived sequences protein-coding 16300 In(6.15)Rb1Ald1Wa - - - inversion of Rb(6.15)1Ald, Wageningen other 230868 Mm.298731 NM_198610 ENSMUSG00000040972 Igsf21 BC055811|Gm141 - 4|4 D3 immunoglobulin superfamily, member 21 protein-coding 102639644 XR_383329 Gm35907 - - 14 B|14 predicted gene, 35907 ncRNA 240263 Mm.38249 NM_173423 ENSMUSG00000033319 Fem1c 2610312A07Rik|3632443A22Rik|AI646567 - 18|18 C fem-1 homolog c (C.elegans) protein-coding 258095 Mm.329042 NM_001011830 ENSMUSG00000059964 Olfr119 MOR263-7 - 17|17 B1 olfactory receptor 119 protein-coding 258414 Mm.377487 NM_146419 ENSMUSG00000094461 Olfr883 MOR162-6 - 9|9 A4 olfactory receptor 883 protein-coding 104625 Mm.247113 NM_212484 ENSMUSG00000020362 Cnot6 CCR4 - 11|11 B1.2 CCR4-NOT transcription complex, subunit 6 protein-coding 100862434 LOC100862434 - - - H-2 class I histocompatibility antigen, Q10 alpha chain-like pseudo 100035765 Nhdlq7 - - 15 1.84 cM non-HDL QTL 7 unknown 434177 Gm5594 EG434177 - 7|7 B3 predicted gene 5594 pseudo 668595 Gm9260 EG668595 - 12|12 F2 ornithine decarboxylase, structural 1 pseudogene pseudo 100534270 Gm21008 - - X|X C1 hemogen pseudogene pseudo 102632413 Mm.320317 Gm30491 - - 5|5 predicted gene, 30491 ncRNA 545675 Gm12859 - - 4|4 D2.1 predicted gene 12859 pseudo 545785 NR_152163 Gm45913 - - 5|5 E4 predicted gene, 45913 ncRNA 231329 Mm.273217 NM_153798 ENSMUSG00000029250 Polr2b Pol2rb|Rpb140|Rpb2 - 5|5 C3.3 polymerase (RNA) II (DNA directed) polypeptide B protein-coding 105244771 XR_868513 Gm40323 Gm42485 - 5 G1.1|5 predicted gene, 40323 ncRNA 53742 D1MitA1 D1Bir27 - - DNA segment, Chr 1, Massachusetts Institute of Technology, alternate 1 unknown 97159 Mm.7066 NM_175287 ENSMUSG00000047613 A430005L14Rik C79672 - 4|4 E2 RIKEN cDNA A430005L14 gene protein-coding 319148 Mm.262517 NM_175653 ENSMUSG00000069310 Hist1h3c H3-143 - 13|13 A3.1 histone cluster 1, H3c protein-coding 102642088 LOC102642088 - - - low molecular weight phosphotyrosine protein phosphatase protein-coding 218945 Gm4817 EG218945 - 14|14 B CAP, adenylate cyclase-associated protein 1 pseudogene pseudo 61386 D5Mit124 - - 5 12.89 cM DNA segment, Chr 5, Massachusetts Institute of Technology 124 unknown 236509 Mm.377254 NM_001005569 ENSMUSG00000068947 Olfr366 MOR138-5P|MOR138-6 - 2|2 B olfactory receptor 366 protein-coding 57442 Mm.282386 NM_020574 ENSMUSG00000035165 Kcne3 2210017H05Rik|MiRP2 - 7|7 E2 potassium voltage-gated channel, Isk-related subfamily, gene 3 protein-coding 108168972 XR_001784406 Gm46867 - - 4 C7|4 predicted gene, 46867 ncRNA 24100 Mm.284480 NM_011906 ENSMUSG00000002871 Tpra1 40kDa|Gpr175|Tpra40 - 6|6 D1 transmembrane protein, adipocyte asscociated 1 protein-coding 98080 B930007P11Rik C85171 - - RIKEN cDNA B930007P11 gene protein-coding 320716 D430047D06Rik - - 6|6 RIKEN cDNA D430047D06 gene protein-coding 102640237 Mm.125418 Gm16838 - - 6|6 30.32 cM predicted gene, 16838 ncRNA 328069 XR_381387 Gm4166 100043009|D930042L22 - 12|12 A2 predicted gene 4166 ncRNA 69638 Mm.372459 NM_027147 ENSMUSG00000028445 Enho 1110065P19Rik|2310040A07Rik - 4|4 A5 energy homeostasis associated protein-coding 16533 Mm.6206 NM_031169 ENSMUSG00000020155 Kcnmb1 BKbeta1 - 11|11 A4 potassium large conductance calcium-activated channel, subfamily M, beta member 1 protein-coding 12482 Mm.4046 NM_007641 ENSMUSG00000024673 Ms4a1 AA960661|Cd20|Ly-44|Ms4a2 - 19 A|19 8.19 cM membrane-spanning 4-domains, subfamily A, member 1 protein-coding 102635483 Gm29031 - - Y|Y predicted gene 29031 ncRNA 109279893 LOC109279893 Mm64 - - VISTA enhancer mm64 biological-region 102467230 n-TAagc8 n-Ta8 - 4 D2.3|4 nuclear encoded tRNA alanine 8 (anticodon AGC) tRNA 102637594 Gm34363 - - 15|15 predicted gene, 34363 pseudo 117008 Pitm3 - - 8 43.96 cM prion incubation time 3 unknown 100312485 Mm.480288 NM_001167542 Vmn1r221 Gm11329 - 13 A3.1|13 vomeronasal 1 receptor 221 protein-coding 102638639 Gm12774 - - 7 B1|7 19.58 cM predicted gene 12774 pseudo 258566 Mm.223095 NM_146573 ENSMUSG00000075214 Olfr1002 MOR175-2 - 2|2 D olfactory receptor 1002 protein-coding 780797 Ighv2-8 - - 12|12 F1 immunoglobulin heavy variable V2-8 pseudo 102639456 Mm.439651 Gm38520 - - 6|6 predicted gene, 38520 ncRNA 72280 2210402A03Rik - - 2|2 RIKEN cDNA 2210402A03 gene protein-coding 606530 Gm13493 Ppia-ps2_635.1 - 2|2 C1.1 peptidylprolyl isomerase A (Ppia) pseudogene 2_635.1 pseudo 19444 Rb(1.2)18Lub Rb18Lub - - Robertsonian translocation, Chr 1 and 2, Lubeck 18 other 102633515 Mm.389258 XR_374351 Gm31324 - - 2 C1.1|2 predicted gene, 31324 ncRNA 21893 NM_011601 Tlm - - 8|8 D3 T lymphoma oncogene unknown 240160 Gm4948 EG240160 - 17|17 E2 trans-2,3-enoyl-CoA reductase pseudogene pseudo 102638807 XR_384318 Gm35284 - - 15 E2|15 predicted gene, 35284 ncRNA 666038 Gm7902 EG666038 - 5|5 G2 predicted gene 7902 pseudo 217718 Mm.29071 NM_145138 ENSMUSG00000034290 Nek9 C130021H08Rik - 12|12 D1 NIMA (never in mitosis gene a)-related expressed kinase 9 protein-coding 97888 C81086 - - - expressed sequence C81086 unknown 67135 Mm.140317 NM_025990 ENSMUSG00000027484 Bpifa5 2310021H06Rik|2310074B19Rik|Pluncl|Splunc5|Tpl - 2|2 H1 BPI fold containing family A, member 5 protein-coding 21977 tor - - - tortured unknown 54394 Mm.272093 NM_018776 ENSMUSG00000017561 Crlf3 BB164954|Creme9|Cytor4 - 11 B5|11 47.43 cM cytokine receptor-like factor 3 protein-coding 257811 Olfr1400-ps1 EG257811|GA_x5J8B7W54VK-284379-285078|Gm5019|MOR203-9_p - 12 B3|12 olfactory receptor 1400, pseudogene 1 pseudo 73440 XR_383101 ENSMUSG00000114390 1700062C10Rik - - 14|14 A2 RIKEN cDNA 1700062C10 gene unknown 258314 Mm.223011 NM_146317 ENSMUSG00000068437 Olfr725 MOR246-3|MOR246-7_p - 14|14 C1 olfactory receptor 725 protein-coding 62036 D4Mit348 - - 4 39.4 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 348 unknown 75295 Mm.243878 NR_126436 ENSMUSG00000113164 4930559C10Rik - - 12|12 D3 RIKEN cDNA 4930559C10 gene ncRNA 213956 Mm.132439 NM_145986 ENSMUSG00000022408 Fam83f AW544981 - 15|15 E1 family with sequence similarity 83, member F protein-coding 18082 Mm.293716 NM_008698 ENSMUSG00000034285 Nipsnap1 - - 11|11 A1 nipsnap homolog 1 protein-coding 78850 9530078B04Rik - - 11|11 RIKEN cDNA 9530078B04 gene protein-coding 258224 XM_017314169 Olfr1358 MOR267-9 - 10|10 C1 olfactory receptor 1358 protein-coding 102640125 XR_382631 Gm36267 - - 13 C1|13 predicted gene, 36267 ncRNA 85086 DXMit78 - - X 40.13 cM DNA segment, Chr X, Massachusetts Institute of Technology 78 unknown 493164 Synch1 - - 4 24.28 cM synechia 1 unknown 621666 Gm6248 EG621666 - 18|18 A1 polycomb group RING finger protein 4 pseudogene pseudo 780828 Ighv13-1 Gm16931 - 12|12 F1 immunoglobulin heavy variable 13-1 other 99334 Mm.188422 NM_178889 ENSMUSG00000050619 Zscan29 AW125441|Zfp690 - 2|2 E5 zinc finger SCAN domains 29 protein-coding 71528 Mm.297640 NR_045878 9030404E10Rik - - 16|16 B2 RIKEN cDNA 9030404E10 gene ncRNA 225049 Mm.77396 NM_028639 ENSMUSG00000036918 Ttc7 1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea - 17|17 E4 tetratricopeptide repeat domain 7 protein-coding 102636101 LOC102636101 - - X A3.3 60S ribosomal protein L39 pseudogene pseudo 77683 Mm.24176 NM_172545 ENSMUSG00000036893 Ehmt1 9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876 - 2|2 A3 euchromatic histone methyltransferase 1 protein-coding 102637012 XM_017312472 LOC102637012 - - 7 B3|7 immunoglobulin superfamily member 22-like pseudo 105246536 Mm.457310 Gm41810 - - 19|19 predicted gene, 41810 ncRNA 22689 Mm.86747 NM_011754 ENSMUSG00000062040 Zfp27 Zfp-27|mkr-4|mszf76 - 7|7 B1 zinc finger protein 27 protein-coding 320709 Mm.74873 NM_178789 ENSMUSG00000063296 Tmem117 B930062P21Rik - 15|15 E3 transmembrane protein 117 protein-coding 751865 Mm.200763 NM_001081962 ENSMUSG00000079165 Sap25 - - 5 G2|5 sin3 associated polypeptide protein-coding 387609 Mm.36557 NM_199449 ENSMUSG00000071757 Zhx2 Afr-1|Afr1|Raf|mKIAA0854 - 15 D1|15 24.01 cM zinc fingers and homeoboxes 2 protein-coding 16257 In(16)51Rk In51Rk - - inversion, Chr 16, Roderick 51 other 68251 Mm.21749 NM_026636 ENSMUSG00000031820 Babam1 5430437P03Rik|Merit40 - 8 B3.3|8 BRISC and BRCA1 A complex member 1 protein-coding 67767 Mm.2053 NM_026365 ENSMUSG00000051256 Jagn1 5830427H10Rik - 6|6 E3 jagunal homolog 1 protein-coding 258365 Mm.377459 NM_146368 ENSMUSG00000075378 Olfr361 MOR159-3 - 2|2 B olfactory receptor 361 protein-coding 102639053 NR_152793 ENSMUSG00000086798 Gm16222 - - 10 C1|10 38.69 cM predicted gene 16222 ncRNA 52546 D12Ertd247e - - 12 46.11 cM DNA segment, Chr 12, ERATO Doi 247, expressed unknown 77800 Mm.444811 NR_046004 ENSMUSG00000086690 4933406J10Rik A930009F24Rik - 7|7 D3 RIKEN cDNA 4933406J10 gene ncRNA 105243646 XR_880357 Gm39486 - - 11 E2|11 predicted gene, 39486 ncRNA 74096 Mm.28804 NM_028752 ENSMUSG00000064267 Hvcn1 0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP - 5|5 F hydrogen voltage-gated channel 1 protein-coding 71972 Mm.159024 NM_028029 ENSMUSG00000025195 Dnmbp 2410003L07Rik|2410003M15Rik|TUBA - 19|19 C3 dynamin binding protein protein-coding 109544 N - - - naked unknown 100417309 Gm18521 - - 17|17 E1.1 crumbs homolog 1 pseudogene pseudo 11441 Mm.113464 NM_007390 ENSMUSG00000030525 Chrna7 Acra7|alpha7|nAchR - 7 C|7 34.47 cM cholinergic receptor, nicotinic, alpha polypeptide 7 protein-coding 75541 Mm.24454 NM_029331 ENSMUSG00000068299 Nat8f4 1700019G17Rik - 6|6 C3 N-acetyltransferase 8 (GCN5-related) family member 4 protein-coding 105246248 XR_001782272 Gm41556 - - 17 A3.3|17 predicted gene, 41556 ncRNA 71915 2310058F05Rik - - X|X RIKEN cDNA 2310058F05 gene protein-coding 107838 Nol1-rs 120kDa - - nucleolar protein 1, related sequence protein-coding 68924 Mm.57748 1190001M18Rik - - 11|11 RIKEN cDNA 1190001M18 gene protein-coding 99061 Mm.482452 C130057N11Rik AI666698 - 2|2 H1 RIKEN cDNA C130057N11 gene protein-coding 102636435 Gm33500 - - 1 A3|1 predicted gene, 33500 pseudo 20130 Mm.389894 NM_009101 ENSMUSG00000038387 Rras AI573426 - 7 B3|7 29.08 cM related RAS viral (r-ras) oncogene protein-coding 22339 Mm.282184 NM_009505 ENSMUSG00000023951 Vegfa Vegf|Vpf - 17 C|17 22.79 cM vascular endothelial growth factor A protein-coding 259022 Mm.377793 NM_207134 ENSMUSG00000075185 Olfr1061 MOR188-1|MOR188-7|MOR188-9|Olfr1515 - 2|2 D olfactory receptor 1061 protein-coding 27780 92N10R - - - DNA segment, 92N10R (Research Genetics) unknown 666150 Gm13120 - - 4|4 E1 zinc finger, MYND domain containing 11 pseudogene pseudo 105243005 XR_869813 Gm39054 - - 7 E1|7 predicted gene, 39054 ncRNA 102633023 XM_011240676 Gm21759 - - 5 A1|5 predicted gene, 21759 protein-coding 382532 Gm12308 - - 11|11 B3 predicted gene 12308 pseudo 100503384 Mm.441691 XR_140771 Gm19665 - - 6 D3|6 45.74 cM predicted gene, 19665 unknown 279610 Mm.418157 NR_002167 E530001F21Rik - - X|X D RIKEN cDNA E530001F21 gene pseudo 668858 Gm9403 EG668858 - 3|3 G3 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 11768 Mm.22239 NM_009678 ENSMUSG00000003309 Ap1m2 D9Ertd818e|[m]1B|mu1B - 9 A3|9 7.76 cM adaptor protein complex AP-1, mu 2 subunit protein-coding 61492 D7Mit186 D7Mit186a - 7 73.19 cM DNA segment, Chr 7, Massachusetts Institute of Technology 186 protein-coding 116924 D13Jde11 - - - DNA segment, Chr 13, Jan Deussing 11 protein-coding 102632694 XR_390639 Gm30699 - - 4 B3|4 predicted gene, 30699 ncRNA 102640183 XR_385721 Gm36312 - - 17 E1.2|17 predicted gene, 36312 ncRNA 102634982 XR_876101 Gm32431 - - 16 B5|16 predicted gene, 32431 ncRNA 61876 D1Mit332 - - 1 39.58 cM DNA segment, Chr 1, Massachusetts Institute of Technology 332 unknown 52335 Mm.276770 NM_001080930 ENSMUSG00000069895 Atxn1l AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e - 8 D3|8 57.22 cM ataxin 1-like protein-coding 68588 Mm.41556 NM_026778 ENSMUSG00000054196 Cthrc1 1110014B07Rik - 15|15 B3.1 collagen triple helix repeat containing 1 protein-coding 102467359 n-TMcat14 n-Tm14 - 13 A2|13 nuclear encoded tRNA methionine 14 (anticodon CAT) tRNA 108168749 Gm13586 - - 2 B|2 24.42 cM 60S ribosomal protein L29 pseudogene pseudo 245502 Mm.490821 NR_036689 Gm41 - - X|X C1 melanoma antigen, family B, 4 pseudogene pseudo 100035938 Bglu3 - - - blood glucose level 3 unknown 102632118 XR_383427 Gm30275 Gm42877 - 14 C2|14 predicted gene, 30275 ncRNA 116748 Mm.41865 NM_138721 ENSMUSG00000050188 Lsm10 - - 4|4 D2.2 U7 snRNP-specific Sm-like protein LSM10 protein-coding 70315 Mm.328128 NM_027382 ENSMUSG00000067567 Hdac8 2610007D20Rik - X|X D histone deacetylase 8 protein-coding 100035457 Vmmt9 - - - vertebral morphology and mechanical traits 9 unknown 77554 9330154F10Rik - - 4|4 RIKEN cDNA 9330154F10 gene protein-coding 105243402 Mm.139026 XR_870723 Gm39334 - - 9 A5.3|9 predicted gene, 39334 ncRNA 108168606 XM_017318812 LOC108168606 - - Y D Y-linked testis-specific protein 1-like protein-coding 14069 Mm.1805 NM_007977 ENSMUSG00000031196 F8 Cf-8|Cf8|FVIII - X A7.3|X 38.17 cM coagulation factor VIII protein-coding 111859 Iapls2-15 - - - intracisternal A particle, lymphocyte specific 2-15 other 100502779 Gm12356 - - 11|11 62.4 cM predicted gene 12356 ncRNA 102640511 XR_387620 Gm36552 - - 5 F|5 predicted gene, 36552 ncRNA 100043450 Mm.145594 NR_030678 AA387883 - - 19 D2|19 expressed sequence AA387883 ncRNA 105247302 XR_882388 LOC105247302 - - - uncharacterized LOC105247302 ncRNA 105246405 Gm41697 - - 18|18 predicted gene, 41697 ncRNA 105243116 Mm.172804 XR_870127 Gm39127 - - 8 A1.1|8 predicted gene, 39127 ncRNA 110120528 LOC110120528 - - - VISTA enhancer mm1175 biological-region 62309 D1Mit224 - - - DNA segment, Chr 1, Massachusetts Institute of Technology 224 unknown 68768 Mm.416844 NM_026834 ENSMUSG00000075566 Krtap4-6 1110054P19Rik - 11|11 D keratin associated protein 4-6 protein-coding 77406 9530004M16Rik - - 4|4 RIKEN cDNA 9530004M16 gene protein-coding 100124417 Eeq1 EEX - - exercise endurance QTL 1 unknown 102634161 XR_001783797 Gm31813 - - 3 A3|3 predicted gene, 31813 ncRNA 103491 Mm.483859 AW742410 - - - expressed sequence AW742410 unknown 103937 Nano - - - nanomouse protein-coding 360099 D17Jcs77 - - - DNA segment, Chr 17, John C. Schimenti 77 unknown 75426 Mm.3919 NM_018741 ENSMUSG00000035551 Igfbpl1 2810011G06Rik|2810453O06Rik|IGFBPL - 4|4 B1 insulin-like growth factor binding protein-like 1 protein-coding 545091 Mm.475598 NM_001165971 Hnrnpa1l2-ps2 EG545091|Gm5803 - 15|15 A2 heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2 protein-coding 100043887 Gm4711 - - 17|17 E2 gem (nuclear organelle) associated protein 8 pseudogene pseudo 100126225 Mm.404388 A630052K13Rik - - 10|10 RIKEN cDNA A630052K13 gene unknown 105244617 LOC105244617 - - 11 B5 60S ribosomal protein L35-like pseudo 81703 Mm.103560 NM_030887 ENSMUSG00000034271 Jdp2 Jundm2|Jundp2|TIF - 12|12 D2 Jun dimerization protein 2 protein-coding 100417624 Gm18722 - - 16|16 A1 serine/arginine repetitive matrix 1 pseudogene pseudo 100042182 XM_011244823 ENSMUSG00000095015 Gm16434 EG666355 - 14|14 A1 predicted gene 16434 protein-coding 271022 Gm10264 EG271022 - 12|12 D3 predicted gene 10264 protein-coding 102640693 XR_001782943 LOC102640693 - - - uncharacterized LOC102640693 ncRNA 13361 Mm.23695 NM_010049 ENSMUSG00000021707 Dhfr 8430436I03Rik|AA607882|AI662710|AW555094 - 13 C3|13 47.64 cM dihydrofolate reductase protein-coding 171279 Mm.377229 NM_134245 ENSMUSG00000116057 Vmn1r216 V1ri10 - 13|13 A3.1 vomeronasal 1 receptor 216 protein-coding 102637521 XR_387582 Gm15736 - - 5 F|5 55.55 cM predicted gene 15736 ncRNA 74148 Mm.214574 NM_001081158 ENSMUSG00000020741 Cluh 1300001I01Rik|Kiaa0664|mKIAA0664 - 11 B5|11 clustered mitochondria (cluA/CLU1) homolog protein-coding 50789 Mm.214746 NM_015822 ENSMUSG00000022124 Fbxl3 AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68 - 14|14 E2.3 F-box and leucine-rich repeat protein 3 protein-coding 102632923 XR_378601 Gm30874 - - 7 F4|7 predicted gene, 30874 ncRNA 102635813 XR_390459 Gm33059 - - 4 A5|4 predicted gene, 33059 ncRNA 62189 D15Mit51 - - 15 5.9 cM DNA segment, Chr 15, Massachusetts Institute of Technology 51 unknown 100417958 Gm14828 - - X|X C3 serologically defined colon cancer antigen 3 pseudogene pseudo 666370 Gm8065 EG666370 - 14|14 C1 predicted gene 8065 pseudo 230899 Mm.482123 NM_008725 ENSMUSG00000041616 Nppa ANP|Anf|Pnd - 4 E2|4 78.66 cM natriuretic peptide type A protein-coding 108168264 Gm46537 - - 15 F1|15 60S ribosomal protein L35a pseudogene pseudo 257791 Olfr929-ps1 EG257791|GA_x5J8B7W60AJ-703922-704828|Gm5012 - 9 A5.1|9 olfactory receptor 929, pseudogene 1 pseudo 19060 Mm.3294 NM_011155 ENSMUSG00000003099 Ppp5c AU020526|PP5 - 7 A2|7 9.15 cM protein phosphatase 5, catalytic subunit protein-coding 61302 D3Mit106 - - 3 49.08 cM DNA segment, Chr 3, Massachusetts Institute of Technology 106 unknown 13371 Mm.21389 NM_010050 ENSMUSG00000007682 Dio2 5DII|AI324267|DIOII - 12|12 D3 deiodinase, iodothyronine, type II protein-coding 102638347 XR_383407 Gm34934 - - 14 C1|14 predicted gene, 34934 ncRNA 735308 NR_030419 ENSMUSG00000076318 Mir216b Mirn216b|mir-216b - 11 A3.3|11 microRNA 216b ncRNA 102639706 Gm28776 - - Y|Y predicted gene 28776 protein-coding 27858 D0Nds17 - - - DNA segment, Nuffield Department of Surgery 17 unknown 619612 Gm6088 EG619612 - X|X F1 eukaryotic translation initiation factor 2C, 2 pseudogene pseudo 100035239 Mtxe1 - - - methotrextate efficacy 1 unknown 102640544 Gm36581 - - 6|6 predicted gene, 36581 ncRNA 666491 Gm8132 EG666491 - 6|6 E3 high mobility group box 1-like pseudogene pseudo 74121 Mm.244835 NM_028765 ENSMUSG00000027380 Acoxl 1200014P05Rik|AV025673 - 2|2 F1 acyl-Coenzyme A oxidase-like protein-coding 668198 Gm9040 EG668198 - 10|10 D2 predicted gene 9040 pseudo 105246166 Gm41500 - - 16|16 predicted gene, 41500 ncRNA 100041968 Mm.262989 XR_381721 Gm3596 - - 12 C3|12 predicted gene 3596 ncRNA 66793 Mm.100270 NM_025769 ENSMUSG00000068617 Efcab1 4930449A16Rik|5430404L10Rik - 16|16 A1 EF-hand calcium binding domain 1 protein-coding 62692 D17Mit110 - - 17 34.86 cM DNA segment, Chr 17, Massachusetts Institute of Technology 110 unknown 723825 NR_029755 ENSMUSG00000065563 Mir103-2 Mirn103-2|mir-103-2 - 2|2 F1 microRNA 103-2 ncRNA 105245592 XR_873814 Gm41024 - - 13 D1|13 predicted gene, 41024 ncRNA 72131 Mm.105385 NR_045169 ENSMUSG00000101268 2010310C07Rik - - 6|6 B2.1 RIKEN cDNA 2010310C07 gene ncRNA 23855 Mm.425519 NM_001167790 ENSMUSG00000060208 Defa17 AU014719|Cryp17|Defcr17 - 8|8 A2 defensin, alpha, 17 protein-coding 23955 Mm.251494 NM_011849 ENSMUSG00000021918 Nek4 Stk2 - 14|14 B NIMA (never in mitosis gene a)-related expressed kinase 4 protein-coding 52246 D1Ertd291e - - 12 1.72 cM DNA segment, Chr 1, ERATO Doi 291, expressed unknown 16161 Mm.731 NM_008353 ENSMUSG00000000791 Il12rb1 CD212|IL-12R[b] - 8 B3.3|8 34.21 cM interleukin 12 receptor, beta 1 protein-coding 70286 Mm.410853 2310067P03Rik - - 13|13 RIKEN cDNA 2310067P03 gene protein-coding 105245484 Mm.95335 XR_873344 Gm40932 - - 13 A5|13 predicted gene, 40932 ncRNA 105243917 XR_865404 Gm28893 - - 1 C1.1|1 predicted gene 28893 ncRNA 60884 D7Mit66 - - 7 64.3 cM DNA segment, Chr 7, Massachusetts Institute of Technology 66 unknown 110612 Mm.326349 Iglv2 Igl-V2 - 16 A3|16 11.93 cM immunoglobulin lambda variable 2 other 625074 Gm6552 EG625074 - 17|17 E3 eukaryotic translation initiation factor 3, subunit H pseudogene pseudo 170813 Mm.240438 NM_133246 ENSMUSG00000024681 Ms4a3 HTm4 - 19|19 A membrane-spanning 4-domains, subfamily A, member 3 protein-coding 70890 4921524M04Rik - - 7|7 RIKEN cDNA 4921524M04 gene protein-coding 62866 D11Mit288 - - 11 58.9 cM DNA segment, Chr 11, Massachusetts Institute of Technology 288 unknown 194985 Gm11658 - - 11|11 E1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105245331 XR_872185 Gm40805 - - 10 D3|10 predicted gene, 40805 ncRNA 504193 Mm.38438 NM_029079 ENSMUSG00000089837 Npcd Cbx6-Nptxr - 15|15 E1 neuronal pentraxin chromo domain protein-coding 73559 Mm.398293 1700106O07Rik - - 17|17 RIKEN cDNA 1700106O07 gene protein-coding 108338 Mtv21 Mtv-21 - - mammary tumor virus locus 21 other 100039735 Gm2395 - - 12|12 C1 predicted gene 2395 pseudo 100041664 Gm3460 - - 14 A1|14 predicted gene 3460 protein-coding 360044 D17Brg3 - - - DNA segment, Chr 17, David E. Bergstrom 3 unknown 14042 Mm.309395 NM_010162 ENSMUSG00000061731 Ext1 AA409028 - 15 C|15 20.0 cM exostoses (multiple) 1 protein-coding 50740 AF007000 L57 - - EST AF007000 protein-coding 105245970 Mm.470681 XR_875395 LOC105245970 - - 15 D2 uncharacterized LOC105245970 ncRNA 105246935 XR_880478 Gm42129 - - 5 E4|5 predicted gene, 42129 ncRNA 12448 Mm.35867 NM_009830 ENSMUSG00000028212 Ccne2 - - 4|4 A1 cyclin E2 protein-coding 102465984 NR_106034 ENSMUSG00000098710 Mir7067 Gm28031|mmu-mir-7067 - 8|8 B3.3 microRNA 7067 ncRNA 217356 Mm.116675 NM_181856 ENSMUSG00000050106 Tmc8 EVIN2|Ever2|mFLJ00400 - 11|11 E2 transmembrane channel-like gene family 8 protein-coding 11924 Mm.42017 NM_009718 ENSMUSG00000027967 Neurog2 Atoh4|Math4A|bHLHa8|ngn-2|ngn2 - 3|3 G2 neurogenin 2 protein-coding 12307 Mm.277665 NM_009788 ENSMUSG00000028222 Calb1 Brain-2|CB|Calb|Calb-1 - 4 A2|4 6.66 cM calbindin 1 protein-coding 17847 Mm.119155 NM_001190401 ENSMUSG00000056342 Usp34 A530081C03Rik|Murr2 - 11 A3.2|11 14.29 cM ubiquitin specific peptidase 34 protein-coding 108167722 XR_001779375 Gm46154 - - 1 E2.3|1 predicted gene, 46154 ncRNA 74559 Mm.286127 NM_029001 ENSMUSG00000021696 Elovl7 9130013K24Rik|AI840082 - 13|13 D2.1 ELOVL family member 7, elongation of long chain fatty acids (yeast) protein-coding 103952 Rn7s9 Rn7s-9 - - 7S RNA 9 scRNA 100043468 Mm.276296 NM_001142957 ENSMUSG00000096910 Zfp955b A430003O12Rik|C430039G02Rik|C530035A18Rik|Gm4455|Zfp883b - 17 B1|17 zinc finger protein 955B protein-coding 108167843 Gm38022 - - 1 H6|1 60S ribosomal protein L27 pseudogene pseudo 13168 Mm.347413 NM_021294 ENSMUSG00000038057 Dbil5 ELP - 11|11 B5 diazepam binding inhibitor-like 5 protein-coding 102641464 LOC102641464 - - - prostaglandin E synthase 3 protein-coding 30948 Mm.4383 NM_009668 ENSMUSG00000024381 Bin1 ALP-1|Amphl|BRAMP-2|SH3P9 - 18 B1|18 18.01 cM bridging integrator 1 protein-coding 102633275 XR_379086 Gm31138 Gm45831 - 9 A1|9 predicted gene, 31138 ncRNA 102639081 XR_375336 Gm35481 - - 2 H3|2 predicted gene, 35481 ncRNA 20055 Mm.702 NM_013647 ENSMUSG00000037563 Rps16 AA420385|AI317031 - 7|7 A3 ribosomal protein S16 protein-coding 67266 Mm.277897 NM_026062 ENSMUSG00000029270 Fam69a 2900024C23Rik|AI315274 - 5 F|5 family with sequence similarity 69, member A protein-coding 12581 Mm.29020 NM_009878 ENSMUSG00000096472 Cdkn2d INK4d|p19|p19INK4d - 9|9 A3 cyclin dependent kinase inhibitor 2D protein-coding 330440 Mm.484618 NM_001033417 ENSMUSG00000048473 Sult6b2 Gm766 - 6|6 G2 sulfotransferase family 6B, member 2 protein-coding 68144 Mm.483289 NM_026575 5031426D15Rik - - 2|2 A1 RIKEN cDNA 5031426D15 gene ncRNA 70426 Mm.142181 NM_001099275 ENSMUSG00000039179 Tekt5 3300001K11Rik - 16|16 A1 tektin 5 protein-coding 71932 Mm.176240 NM_001033163 ENSMUSG00000037577 Ephx3 2310063B19Rik|Abhd9|EH3 - 17|17 B1 epoxide hydrolase 3 protein-coding 105245183 XR_871744 Gm40671 - - 10 B4|10 predicted gene, 40671 ncRNA 100040453 Ppp1r2-ps1 Gm2780 - 17 A1|17 protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 1 pseudo 387252 NR_029731 ENSMUSG00000105621 Mirlet7f-1 Mirlet7f1|Mirnlet7f1|let-7f-1 - 13|13 A5 microRNA let7f-1 ncRNA 100312505 Vmn1r-ps59 - - 7|7 A1 vomeronasal 1 receptor, pseudogene 59 pseudo 18049 Mm.1259 NM_013609 ENSMUSG00000027859 Ngf Ngfb|beta-NGF - 3 F2.2|3 45.25 cM nerve growth factor protein-coding 102635034 XR_381786 Gm32473 - - 12 D2|12 predicted gene, 32473 ncRNA 19854 Rnu3b-ps3 - - 12|12 51.45 cM U3B small nuclear RNA pseudogene 3 pseudo 19588 Rb(6.13)1H Rb1H - - Robertsonian translocation, Chr 6 and 13, Harwell 1 other 434279 Mm.258524 Gm5606 EG434279 - 8|8 A1.1 predicted gene 5606 unknown 20090 Mm.379006 NM_009093 ENSMUSG00000034892 Rps29 - - 12|12 C2 ribosomal protein S29 protein-coding 102639808 XR_379546 Gm36033 - - 9 C|9 predicted gene, 36033 ncRNA 102742 Mm.326390 AW047749 - - - expressed sequence AW047749 unknown 668118 Gm8983 EG668118 - 14|14 C3 cyclin I pseudogene pseudo 238161 Mm.310822 NM_198111 ENSMUSG00000061603 Akap6 AI482140|Akapalpha|Akapbeta|PRKA - 12|12 C1 A kinase (PRKA) anchor protein 6 protein-coding 677338 Gm9714 - - 12|12 A1.3 predicted gene 9714 pseudo 27580 D5Buc20 432N14.T7 - 5 38.44 cM DNA segment, Chr 5, Bucan 20 unknown 105246230 Gm41542 - - 17|17 predicted gene, 41542 protein-coding 667014 Gm8420 EG667014 - 1|1 C1.1 ribosomal protein L15 pseudogene pseudo 100039179 Mm.37851 Gm2085 - - 8 A4|8 predicted gene 2085 ncRNA 100303732 Mm.484983 NM_001177404 ENSMUSG00000095199 Zfp967 Gm14431 - 2|2 H4 zinc finger protein 967 protein-coding 108167335 XR_878221 Gm45946 - - X D|X predicted gene, 45946 ncRNA 102465768 NR_106123 ENSMUSG00000098714 Mir7663 Gm28034|mmu-mir-7663 - 10|10 A3 microRNA 7663 ncRNA 107608 Tcrd-V8 - - - T cell receptor delta, variable 8 other 665489 Gm7658 AL022788|AL024247|AU040300|D1Mgi28|EG665489 - 1 A4|1 eukaryotic translation initiation factor 3, subunit M pseudogene pseudo 666919 NR_073378 Gm8363 EG666919 - 17|17 A1 non-SMC condensin II complex, subunit H2 pseudogene pseudo 229603 Mm.272336 NM_001025613 ENSMUSG00000038495 Otud7b 2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1 - 3|3 F2.1 OTU domain containing 7B protein-coding 15239 Mm.7919 NM_008244 ENSMUSG00000025793 Hgs Hgr|Hrs|ZFYVE8|tn - 11 E2|11 84.16 cM HGF-regulated tyrosine kinase substrate protein-coding 102639750 XR_391684 Gm35988 - - X A5|X predicted gene, 35988 ncRNA 109531 Laq1 - - - lupus associated arthritis quantitative trait locus 1 unknown 114619 Yv - - 15 12.53 cM yellow value unknown 100503713 Gm16141 - - 11|11 11.35 cM predicted gene 16141 ncRNA 68274 Mm.85045 NM_026652 ENSMUSG00000028314 Toporsl 4930547C10Rik - 4|4 B2 topoisomerase I binding, arginine/serine-rich like protein-coding 74283 Mm.398247 NR_046045 ENSMUSG00000100890 1700085C21Rik - - 12|12 D1 RIKEN cDNA 1700085C21 gene ncRNA 258631 Mm.377602 NM_146638 ENSMUSG00000047039 Olfr1151 MOR177-9 - 2|2 D olfactory receptor 1151 protein-coding 668393 Gm9146 EG668393 - 7 B1|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100042663 Mm.291732 NR_103799 ENSMUSG00000095110 1700003E24Rik Gm14779 - X|X C3 Gm5941 pseudogene pseudo 77827 Mm.107646 NM_133922 ENSMUSG00000042810 Krba1 A930040G15Rik|AI448780 - 6|6 B2.3 KRAB-A domain containing 1 protein-coding 100503607 Mm.394575 BB319198 - - 10|10 39.72 cM expressed sequence BB319198 unknown 19623 Rb(8.19)1Ct Rb1Ct - - Robertsonian translocation, Chr 8 and 19, Cattanach 1 other 21081 T(14;15)6Ca T6Ca - - reciprocal translocation, Chr 14 and 15, Carter 6 other 78435 A930014E10Rik - - 6|6 RIKEN cDNA A930014E10 gene protein-coding 53141 401e9Sp6 - - - DNA segment, 401e9Sp6 unknown 75040 Mm.156068 NM_029152 ENSMUSG00000020562 Efcab10 4930504H06Rik - 12|12 A3 EF-hand calcium binding domain 10 protein-coding 109363674 LOC109363674 - - - Bmp2 downstream enhancer ECR-1 biological-region 109886 Tcd5 Tcd-5 - - t-complex distorter 5 protein-coding 319991 Mm.441340 NM_177052 ENSMUSG00000023999 Kif6 D130004B10Rik|D130084M03Rik - 17|17 C kinesin family member 6 protein-coding 102636387 XR_381910 Gm33467 - - 12 F1|12 predicted gene, 33467 ncRNA 102638425 XR_383314 Gm34996 - - 14 A3|14 predicted gene, 34996 ncRNA 102633254 LOC102633254 - - 12 C2 protein kish-A pseudogene pseudo 100534296 Mm.390939 NM_001362121 Gm9805 - - 17|17 A3.3 predicted gene 9805 protein-coding 100417021 Gm18366 - - 17|17 E2 high mobility group box 1 pseudogene pseudo 258391 Mm.377475 NM_146396 ENSMUSG00000074965 Olfr1277 MOR248-11 - 2|2 E3 olfactory receptor 1277 protein-coding 170745 Mm.129279 NM_133213 ENSMUSG00000037005 Xpnpep2 9030008G12Rik|mAPP - X|X A5 X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound protein-coding 21029 T(1;9)27H T27H - - reciprocal translocation, Chr 1 and 9, Harwell 27 other 11409 Mm.18759 NM_007383 ENSMUSG00000029545 Acads AI196007|Bcd-1|Bcd1|Hdlq8|SCAD - 5 55.99 cM|5 F acyl-Coenzyme A dehydrogenase, short chain protein-coding 630537 Mm.436677 NM_001039238 ENSMUSG00000096278 Dcpp2 Dcpp-2|EG630537|SPT-2 - 17|17 A3.3 demilune cell and parotid protein 2 protein-coding 62253 D18Mit36 - - 18 24.64 cM DNA segment, Chr 18, Massachusetts Institute of Technology 36 unknown 102639574 Gm35854 - - 1|1 predicted gene, 35854 protein-coding 57785 Mm.143774 NM_021329 ENSMUSG00000032892 Rangrf 2400006H24Rik|Mog1|Rangnrf - 11|11 B3 RAN guanine nucleotide release factor protein-coding 112375 Sle1a - - 1 74.86 cM systematic lupus erythematosus susceptibility 1a unknown 665024 NR_028587 Gm7452 EG665024 - 6|6 B1 predicted pseudogene 7452 pseudo 100036337 Sdtq8 E10.1 - - skull development traits QTL 8 unknown 111927 Iap3rb13 - - - intracisternal A-type particle, U3 region, SINE repeat b-13 other 319579 Mm.190454 NM_176950 ENSMUSG00000049560 Defb20 9230107O10Rik|BD-20|mBD-20 - 2|2 G3 defensin beta 20 protein-coding 101056185 XR_001784304 Gm13301 - - 4 A5|4 22.33 cM predicted gene 13301 pseudo 105247020 XR_880748 Gm42202 - - 3 A3|3 predicted gene, 42202 ncRNA 102633212 Gm28468 - - Y|Y predicted gene 28468 ncRNA 414115 Mm.483102 NR_033224 D330050I16Rik - - 19 A|19 RIKEN cDNA D330050I16 gene ncRNA 330902 Mm.437044 NR_045742 ENSMUSG00000097665 Gm16853 4930565O14 - 9|9 A3 predicted gene, 16853 ncRNA 140475 Mm.135448 NM_080458 ENSMUSG00000025418 Bsnd - - 4|4 C7 barttin CLCNK type accessory beta subunit protein-coding 231382 Mm.240139 NM_145561 ENSMUSG00000061259 Tmprss11d AST|AsP|BC020151 - 5|5 E1 transmembrane protease, serine 11d protein-coding 665085 Gm7483 EG665085 - 17|17 A3.1 cyclin B1 pseudogene pseudo 102637153 XR_379825 Gm34037 - - 9 F1|9 predicted gene, 34037 ncRNA 114578 Myaa1 - - 17 2.11 cM modifier of Yaa 1 unknown 102637514 XR_381575 ENSMUSG00000112763 Gm34304 - - 12 B3|12 predicted gene, 34304 ncRNA 105245662 Gm41085 - - 14|14 predicted gene, 41085 ncRNA 623123 Gm6395 EG623123 - 12|12 C1 DnaJ (Hsp40) homolog, subfamily B, member 6 pseudogene pseudo 100217421 NR_028521 Snord11 MBII-95 - 1 C2|1 small nucleolar RNA, C/D box 11 snoRNA 21305 T(X;4)37H T37H - - reciprocal translocation, Chr X and 4, Harwell 37 other 320936 Mm.394600 XR_876385 E430024P14Rik D030054H15Rik - 17|17 A1 RIKEN cDNA E430024P14 gene ncRNA 170756 Mm.291070 NM_133221 ENSMUSG00000032754 Slc8b1 AF261233|NCKX6|NCLX|Slc24a6 - 5|5 F solute carrier family 8 (sodium/lithium/calcium exchanger), member B1 protein-coding 667094 Mm.484989 NM_001167150 ENSMUSG00000094149 Gm8453 EG667094|Vmn1r145 - 7|7 A3 predicted gene 8453 protein-coding 69250 Mm.393606 2610029K11Rik - - 17|17 RIKEN cDNA 2610029K11 gene protein-coding 332937 Mm.331881 NM_198960 ENSMUSG00000042477 Tfap2e AI505200|AP-2e|Tcfap2e - 4|4 D2.2 transcription factor AP-2, epsilon protein-coding 100418394 Gm19182 - - 7|7 E1 UTP18, small subunit (SSU) processome component, homolog pseudogene pseudo 621549 Mm.173163 XR_001784221 Gm11783 - - 4|4 A1 predicted gene 11783 ncRNA 268564 Mm.77065 NM_178744 ENSMUSG00000033454 Zbtb1 9430077A12|AI256369|Bsg2|C430003J21Rik - 12|12 C3 zinc finger and BTB domain containing 1 protein-coding 665057 Cbx3-ps8 EG665057|Gm7469 - 9|9 A1 chromobox 3, pseudogene 8 pseudo 102639355 XR_389803 Gm35688 - - 5 B1|5 predicted gene, 35688 ncRNA 111658 Ms22 MMS22 - - minisatellites detected by probe MMS22 other 19567 Rb(5.14)6Mpl Rb6Mpl - - Robertsonian translocation, Chr 5 and 14, Montpellier 6 other 102639780 Mm.399552 XR_391596 ENSMUSG00000109003 Gm36011 - - 7 C|7 predicted gene, 36011 ncRNA 102640904 Gm36858 - - 18 B2|18 predicted gene, 36858 pseudo 100042898 Gm4097 - - 3 F2.1|3 ferritin light chain 2 pseudogene pseudo 80913 Mm.341243 NM_030723 ENSMUSG00000020594 Pum2 5730503J23Rik|Pumm2 - 12|12 A1.1 pumilio RNA-binding family member 2 protein-coding 246316 Mm.44721 NM_144945 ENSMUSG00000039252 Lgi2 mKIAA1916 - 5|5 C1 leucine-rich repeat LGI family, member 2 protein-coding 100124543 Bmd39 - - - bone mineral density 39 unknown 102639412 Gm38519 - - 2|2 predicted gene, 38519 pseudo 61925 D5Mit350 - - 5 17.27 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 350 unknown 171395 Mm.146711 XM_017314870 ENSMUSG00000046634 Pkd1l1 AA444596 - 11|11 A1 polycystic kidney disease 1 like 1 protein-coding 15493 Mm.482364 NM_153193 ENSMUSG00000063730 Hsd3b2 3-beta-HSD II - 3 F2.2|3 42.85 cM hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 102633992 Gm29058 - - Y|Y predicted gene 29058 ncRNA 53650 D5J2 D0J7 - - DNA segment, Chr 5, Jackson Laboratory 2 unknown 108167505 Gm46021 - - 7 F3|7 predicted gene, 46021 pseudo 666257 Mm.390242 NM_001353989 Gm8008 EG666257|Znf660 - 9|9 F4 predicted gene 8008 protein-coding 492874 Arrd1 - - - age-related retinal degeneration 1 unknown 100043827 NM_001310660 Scgb2b1 Abpbg1|Gm4677 - 7|7 B1 secretoglobin, family 2B, member 1 protein-coding 492862 Rear1 - - 6 37.96 cM rearing 1 unknown 102642783 Gm38633 - - 9|9 predicted gene, 38633 protein-coding 100040165 Gm2641 - - 8|8 C3 predicted gene 2641 pseudo 241159 Mm.214565 NM_173772 ENSMUSG00000034000 Neu4 9330166I04 - 1|1 D sialidase 4 protein-coding 56298 Mm.175403 NM_019717 ENSMUSG00000059811 Atl2 2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2 - 17|17 E3 atlastin GTPase 2 protein-coding 627897 Gm14037 - - 2|2 F3 predicted gene 14037 pseudo 215458 Mm.122399 NR_138099 LOC215458 - - 6|6 F1 uncharacterized LOC215458 ncRNA 76024 Mm.440710 NR_024599 Gm11346 5830431A10Rik|AI447617|Gm11347 - 13|13 A3.1 X-linked lymphocyte-regulated 5 pseudogene pseudo 492974 Hdlq6 - - 1 88.97 cM HDL QTL 6 unknown 102635747 XR_390354 Gm33007 - - 4 A1|4 predicted gene, 33007 ncRNA 102640893 Mm.404252 XR_389420 Gm36851 - - 5 E4|5 predicted gene, 36851 ncRNA 102637753 XR_374939 Gm34484 - - 2 F1|2 predicted gene, 34484 ncRNA 100416031 Gm17880 - - 17|17 A1 fibrillarin pseudogene pseudo 319166 Mm.261665 NM_178187 ENSMUSG00000069272 Hist1h2ae 1190022L06 - 13|13 A3.1 histone cluster 1, H2ae protein-coding 68802 Mm.259767 NM_182992 ENSMUSG00000020067 Mypn 1110056A04Rik|9830112J03|AI853556|mKIAA4170 - 10|10 B4 myopalladin protein-coding 53137 220n3-T7 - - - DNA segment, 220n3-T7 unknown 76682 1500002K03Rik - - - RIKEN cDNA 1500002K03 gene protein-coding 634678 Gm7143 EG634678 - 12 E|12 ribosomal protein S2 pseudogene pseudo 100040657 XM_001475283 ENSMUSG00000090487 Gm2888 - - 14 A1|14 predicted gene 2888 protein-coding 100040883 Vma21-ps EG625573|Gm16403|Vma21 - 4|4 B2 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), pseudogene pseudo 62370 D10Mit168 - - 10 7.94 cM DNA segment, Chr 10, Massachusetts Institute of Technology 168 unknown 76215 Mm.445947 6530413G14Rik - - 9|9 RIKEN cDNA 6530413G14 gene protein-coding 319748 Mm.86607 NM_001033383 ENSMUSG00000074405 Zfp865 6430526N21Rik|Znf865 - 7|7 A1 zinc finger protein 865 protein-coding 51861 D6Sut1e - - - DNA segment, Chr 6, Sutcliffe 1, expressed unknown 102639095 Gm28531 - - Y|Y predicted gene 28531 pseudo 105244545 XR_001783974 Gm40138 - - 3 G1|3 predicted gene, 40138 ncRNA 73870 Mm.440681 NR_015527 ENSMUSG00000108129 4930417O13Rik - - 6|6 F2-F3 RIKEN cDNA 4930417O13 gene ncRNA 667888 Gm8861 EG667888 - 5 A1|5 anaphase-promoting complex subunit 5 pseudogene pseudo 108168229 Gm46507 - - 15 D1|15 predicted gene, 46507 pseudo 67587 Mm.444729 Cdk19os 4930520K10Rik - 10|10 cyclin-dependent kinase 19, opposite strand protein-coding 100124685 Trbv20 Gm16911|Tcrb-V15 - 6 19.28 cM|6 B1 T cell receptor beta, variable 20 other 28169 Mm.141230 NM_053014 ENSMUSG00000001211 Agpat3 AW061257|AW493985|D10Jhu12e|lpaat3 - 10 C1|10 39.72 cM 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 97872 C79123 - - - expressed sequence C79123 unknown 259066 Mm.377818 NM_147063 ENSMUSG00000073998 Olfr520 MOR101-1 - 7|7 E1 olfactory receptor 520 protein-coding 384360 Gm5303 EG384360 - 6|6 A3.2 kelch domain containing pseudogene pseudo 544954 Hnrnpa1l2-ps EG544954|Hnrnpa1l2 - 13|13 C1 heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene pseudo 100035699 Brwt4 - - - brain weight 4 unknown 22547 Xmv28 Xmv-28 - - xenotropic murine leukemia virus 28 other 619326 Mm.355174 NM_001033819 ENSMUSG00000038768 9130409I23Rik - - 1|1 H4 RIKEN cDNA 9130409I23 gene protein-coding 61351 D4Mit145 - - 4 43.3 cM DNA segment, Chr 4, Massachusetts Institute of Technology 145 unknown 69257 Mm.131038 NM_023502 ENSMUSG00000037174 Elf2 2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2 - 3|3 C E74-like factor 2 protein-coding 209176 Mm.219580 NM_145949 ENSMUSG00000031549 Ido2 AI265623|C230043N17Rik|Ido-2|Indol1 - 8|8 A2 indoleamine 2,3-dioxygenase 2 protein-coding 100035345 Bod5 BOD8.1 - 8 32.3 cM bone length and organs 5 unknown 56563 D6Ott113 - - 6 63.44 cM DNA segment, Chr 6, Animal Research Centre, Ottawa 113 unknown 114651 Cia9 - - - collagen induced arthritis QTL 9 unknown 100041262 XR_874129 Gm3239 - - 14 A1|14 predicted gene 3239 protein-coding 100416518 Gm18140 - - 17|17 E1.3 ribosomal protein L17 pseudogene pseudo 100504328 Gm14406 - - 2 H4|2 99.43 cM novel KRAB box and zinc finger, C2H2 type domain containing protein pseudo 108684024 LOC108684024 - - 12 A3-B ES cell cis-regulatory motif 2b biological-region 102635551 Gm32855 - - 8|8 predicted gene, 32855 ncRNA 105243837 Gm39579 - - 11|11 predicted gene, 39579 ncRNA 102635166 Gm32572 - - 17|17 predicted gene, 32572 pseudo 75956 Mm.5222 NM_175229 ENSMUSG00000039218 Srrm2 5033413A03Rik|AA410130|SRm300|mKIAA0324 - 17|17 A3.3 serine/arginine repetitive matrix 2 protein-coding 102634806 XR_377036 Gm32304 - - 5 C3.3|5 predicted gene, 32304 ncRNA 105242968 XR_882206 Gm39030 - - 7 C|7 predicted gene, 39030 ncRNA 102640666 XR_389702 Gm36680 - - 3 B|3 predicted gene, 36680 ncRNA 105243347 XR_870553 Gm39295 - - 9 A2|9 predicted gene, 39295 ncRNA 68332 Mm.6844 NM_001033140 ENSMUSG00000074211 Sdhaf1 0610010E21Rik|AI430885|AW490662|Lyrm8 - 7|7 B1 succinate dehydrogenase complex assembly factor 1 protein-coding 61296 D2Mit288 - - 2 85.59 cM DNA segment, Chr 2, Massachusetts Institute of Technology 288 unknown 67303 Mm.396611 NR_040438 ENSMUSG00000097503 3110045C21Rik AI838577 - 1|1 H3 RIKEN cDNA 3110045C21 gene ncRNA 382562 Mm.251575 NM_028376 ENSMUSG00000020639 Pfn4 2900024P18Rik - 12|12 A1.1 profilin family, member 4 protein-coding 105246383 XR_001782422 Gm41678 - - 18 A2|18 predicted gene, 41678 ncRNA 12502 Mm.335106 NM_009850 ENSMUSG00000002033 Cd3g Ctg-3|Ctg3|T3g - 9 A5.2|9 24.84 cM CD3 antigen, gamma polypeptide protein-coding 18750 Mm.222178 NM_011101 ENSMUSG00000050965 Prkca AI875142|Pkca - 11 E1|11 70.8 cM protein kinase C, alpha protein-coding 110150 Fim3 Fim-3 - 3|3 Friend MuLV integration site 3 protein-coding 320609 Mm.56097 NM_177204 ENSMUSG00000039629 Strip2 D330017J20Rik|Fam40b - 6|6 A3.3 striatin interacting protein 2 protein-coding 71791 Mm.105759 NM_027926 ENSMUSG00000039070 Cpa4 1110019K20Rik|AV009555 - 6|6 A3.3 carboxypeptidase A4 protein-coding 258046 Mm.377338 NM_001011812 ENSMUSG00000094269 Olfr951 MOR171-33P|MOR171-49 - 9|9 A5.1 olfactory receptor 951 protein-coding 383791 Gm14006 - - 2|2 F1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102638210 Gm34824 - - 1|1 predicted gene, 34824 ncRNA 258745 Mm.377668 NM_146750 ENSMUSG00000073907 Olfr689 MOR40-3 - 7|7 E3 olfactory receptor 689 protein-coding 102633121 XR_391427 Gm31028 - - 7 B3|7 predicted gene, 31028 ncRNA 231633 Mm.41681 NM_146162 ENSMUSG00000054675 Tmem119 AW208946|BC025600|obif - 5|5 F transmembrane protein 119 protein-coding 100418482 Gm19240 - - 18|18 A1 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase pseudogene pseudo 68671 Mm.21439 NM_024229 ENSMUSG00000025137 Pcyt2 1110033E03Rik|ET - 11|11 E2 phosphate cytidylyltransferase 2, ethanolamine protein-coding 17355 Mm.6949 NM_133919 ENSMUSG00000029313 Aff1 9630032B01Rik|AW319193|Af4|Mllt2h|Rob - 5 E5|5 50.45 cM AF4/FMR2 family, member 1 protein-coding 102637583 XR_382523 ENSMUSG00000114854 Gm34354 - - 13 B1|13 predicted gene, 34354 ncRNA 105242429 XR_880808 LOC105242429 - - - uncharacterized LOC105242429 ncRNA 664872 Gm7382 EG664872 - 15|15 B3.1 actin related protein 2/3 complex, subunit 1B pseudogene pseudo 102920 Mm.34903 NM_145924 ENSMUSG00000031262 Cenpi CENP-I|Fshprh1 - X|X E3 centromere protein I protein-coding 231670 Mm.21912 NM_145564 ENSMUSG00000032898 Fbxo21 2810425J22Rik|AU016673 - 5|5 F F-box protein 21 protein-coding 102466768 NR_105898 ENSMUSG00000098958 Mir6933 Gm27856|mmu-mir-6933 - 11|11 E2 microRNA 6933 ncRNA 108167857 XM_017314872 LOC108167857 - - 11 B1.3 circumsporozoite protein-like protein-coding 384569 Mm.262724 NM_001029877 ENSMUSG00000030411 Nova2 Gm1424 - 7|7 A3 neuro-oncological ventral antigen 2 protein-coding 620695 Mm.482106 NM_001145034 ENSMUSG00000087006 Gm13889 Ag2 - 2|2 E1 predicted gene 13889 protein-coding 105734734 NM_001308498 Gm11715 - - 11 E1|11 70.19 cM predicted gene 11715 protein-coding 100035255 Sdtq10 E17|L17 - - skull development traits QTL 10 unknown 100035392 Mskt5 - - - musculoskeletal traits 5 unknown 108523 Ms13-18 Ms13-Hf2 - - minisatellite 13-18 detected by M13 phage probe other 666289 Mm.390111 Gm8025 EG666289 - 8|8 C2 predicted gene 8025 unknown 105242619 Gm38783 - - 6|6 predicted gene, 38783 ncRNA 77665 Mm.400558 NR_040618 ENSMUSG00000086449 9030204H09Rik - - 2|2 B RIKEN cDNA 9030204H09 gene ncRNA 111528 Tcra-V6 - - - T cell receptor alpha, variable 6 other 100035434 Dbsq1 - - - diabetes susceptibility QTL 1 unknown 102638750 XR_381590 Gm35239 - - 12 C1|12 predicted gene, 35239 ncRNA 105244166 XR_879842 Gm39824 - - 11 B1.3|11 predicted gene, 39824 ncRNA 57878 AA414988 - - - EST AA414988 unknown 21682 Mm.319581 NM_013689 ENSMUSG00000029217 Tec - - 5 C3.2|5 38.44 cM tec protein tyrosine kinase protein-coding 330460 Mm.361851 NM_177887 ENSMUSG00000046456 Tmem150b A630041N19|Tmem224 - 7|7 A1 transmembrane protein 150B protein-coding 106982 Mm.394827 AU018823 - - - expressed sequence AU018823 protein-coding 101488212 Mm.439665 NM_146023 ENSMUSG00000070354 Evi2 Evi2a-evi2b|Gm21975 - 11 B5|11 ecotropic viral integration site 2 protein-coding 140559 Mm.271717 NM_080419 ENSMUSG00000038034 Igsf8 ESTM34|EWI-2|KCT-4|PGRL - 1 H3|1 79.59 cM immunoglobulin superfamily, member 8 protein-coding 100035885 Bntq11 - - - bone traits QTL 11 unknown 100040076 Gm15141 - - X|X F3 predicted gene 15141 pseudo 100383 Mm.17918 NM_133889 ENSMUSG00000040859 Bsdc1 1110063F24Rik|AW011758 - 4|4 D2.2 BSD domain containing 1 protein-coding 108169150 XM_017321863 Gm46963 - - 6 D1|6 predicted gene, 46963 protein-coding 100043572 Gm4525 - - 3 F2.2|3 ribosomal protein S27 pseudogene pseudo 22173 Mm.238127 NM_011661 ENSMUSG00000004651 Tyr Oca1|albino|c|skc35 - 7 D3|7 49.01 cM tyrosinase protein-coding 100040935 XR_001781340 Gm3050 - - 14 A1|14 predicted gene 3050 protein-coding 100042114 Gm3676 - - 14 B-C1|14 predicted gene 3676 protein-coding 100416527 Gm18146 - - 14|14 D1 ribosomal protein L17 pseudogene pseudo 100034885 Pbwg9 - - 10 9.82 cM postnatal body weight growth 9 unknown 100045469 Mm.143404 NR_040358 ENSMUSG00000086496 Gm14204 - - 2|2 H1 predicted gene 14204 ncRNA 637576 Gm7212 EG637576 - X|X A4 predicted gene 7212 pseudo 629159 Mm.256720 NR_024331 ENSMUSG00000101225 1700008J07Rik AW048743 - 7|7 F3 RIKEN cDNA 1700008J07 gene ncRNA 102635896 XR_382372 Gm33116 - - 13 A5|13 predicted gene, 33116 ncRNA 102641256 Gm38544 - - 3|3 predicted gene, 38544 ncRNA 112013 Bw5 - - - body weight QTL 5 unknown 232341 Mm.333349 NM_198703 ENSMUSG00000045962 Wnk1 6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344 - 6|6 F1 WNK lysine deficient protein kinase 1 protein-coding 58178 Mm.313672 NM_021377 ENSMUSG00000043531 Sorcs1 Sorcs|mSorCS - 19 D1|19 45.05 cM sortilin-related VPS10 domain containing receptor 1 protein-coding 56189 Mm.270525 NM_019546 ENSMUSG00000036892 Prodh2 2510028N04Rik|2510038B11Rik|HYPDH|MmPOX|MmPOX1|POX1 - 7|7 B1 proline dehydrogenase (oxidase) 2 protein-coding 110101 Rfv1 Rfv-1 - - recovery from Friend virus 1 protein-coding 20288 Mm.239291 NM_031195 ENSMUSG00000025044 Msr1 MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr - 8 A4|8 23.89 cM macrophage scavenger receptor 1 protein-coding 77439 9530025L08Rik - - 19|19 RIKEN cDNA 9530025L08 gene protein-coding 545531 Gm5848 EG545531 - 3|3 E1 predicted pseudogene 5848 pseudo 102638034 XR_382712 Gm34699 - - 13 C3|13 predicted gene, 34699 ncRNA 100316734 Mir2183 mmu-mir-2183 - - microRNA 2183 ncRNA 100038999 XR_866351 Gm13552 - - 2|2 C1.1 mitochondrial ribosomal protein S18B pseudogene pseudo 105247006 XR_880695 Gm42190 - - 3 A2|3 predicted gene, 42190 ncRNA 102467255 n-TNgtt3 n-Tn3 - 1 H6|1 nuclear encoded tRNA asparagine 3 (anticodon GTT) tRNA 102632533 Gm30584 - - 14 D3|14 predicted gene, 30584 pseudo 102637850 Gm34556 - - 12|12 predicted gene, 34556 pseudo 17060 Mm.9749 NM_008528 ENSMUSG00000061132 Blnk BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65 - 19 C3|19 34.26 cM B cell linker protein-coding 14910 Mm.280950 NR_027008 ENSMUSG00000086429 Gt(ROSA)26Sor AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1 - 6 E3|6 52.73 cM gene trap ROSA 26, Philippe Soriano ncRNA 100379292 Mm.273833 Gm10430 - - - predicted gene 10430 protein-coding 723932 NR_029654 ENSMUSG00000065587 Mir34c Mirn34c|mir-34c|mmu-mir-34c - 9|9 A5.3 microRNA 34c ncRNA 100417048 Gm14213 - - 2|2 E5 WW domain binding protein 2 pseudogene pseudo 105180380 D030009A17Rik - - - Riken cDNA D030009A17 gene protein-coding 102465177 NR_105765 ENSMUSG00000098379 Mir6347 Gm27863|mmu-mir-6347 - 1|1 H2.3 microRNA 6347 ncRNA 62603 D13Mit137 - - 13 18.87 cM DNA segment, Chr 13, Massachusetts Institute of Technology 137 unknown 53103 Y88m6a6 - - - DNA segment, Y88m6a6 unknown 100416725 Gm18215 - - 14|14 A3 Kruppel-like factor 17 pseudogene pseudo 258142 Olfr565-ps1 MOR14-8P - 7|7 E3 olfactory receptor 565, pseudogene 1 pseudo 258295 Mm.377417 NM_146298 ENSMUSG00000058188 Olfr746 MOR106-12 - 14|14 C1 olfactory receptor 746 protein-coding 110120466 LOC110120466 - - - VISTA enhancer mm1451 biological-region 102638381 XR_382536 Gm34961 - - 13 B2|13 predicted gene, 34961 ncRNA 59016 Mm.286598 NM_021513 ENSMUSG00000036442 Thap11 2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin - 8|8 D3 THAP domain containing 11 protein-coding 383712 Eif1-ps3 Eif1-ps|Gm13637 - 2|2 C3 eukaryotic translation initiation factor 1, pseudogene 3 pseudo 666317 NM_001045532 ENSMUSG00000062551 Prl2c1 Ghd22 - 13|13 A3.1 Prolactin family 2, subfamily c, member 1 protein-coding 56505 Mm.42195 NM_019685 ENSMUSG00000030079 Ruvbl1 2510009G06Rik|Pontin52|Tip49a - 6|6 D1 RuvB-like protein 1 protein-coding 105245768 XR_874673 Gm41165 - - 14 D1|14 predicted gene, 41165 ncRNA 105246886 XR_880207 LOC105246886 - - 11 D uncharacterized LOC105246886 ncRNA 319801 Mm.101836 NM_177003 ENSMUSG00000038028 Tigar 9630033F20Rik|AA793651|AI595337|C79710|C85509 - 6|6 F3 Trp53 induced glycolysis repulatory phosphatase protein-coding 105245261 XR_871950 Gm40739 - - 10 C2|10 predicted gene, 40739 ncRNA 493043 Cfld2 - - - cystic fibrosis lung disease 2 unknown 100043133 Mm.183647 NM_177001 ENSMUSG00000062944 9130023H24Rik GLI4 - 7|7 F3 RIKEN cDNA 9130023H24 gene protein-coding 100417881 Gm18876 - - 10|10 C1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 pseudogene pseudo 61582 DXMit135 - - X 76.75 cM DNA segment, Chr X, Massachusetts Institute of Technology 135 unknown 360125 D17Brg199 - - - DNA segment, Chr 17, David E. Bergstrom 199 unknown 329716 Mm.275223 NM_183223 ENSMUSG00000046317 BC107364 D730018G16 - 3|3 F2.1 cDNA sequence BC107364 protein-coding 100035797 Hpcr2 Hcr2 - 10 34.83 cM hepatocarcinogen resistance 2 unknown 70979 Mm.72959 NM_027633 ENSMUSG00000033963 Fancd2os 4931417G12Rik - 6|6 E3 Fancd2 opposite strand protein-coding 56745 Mm.23845 NM_019959 ENSMUSG00000017446 C1qtnf1 1600017K21Rik|CTRP1|Zsig37 - 11|11 E2 C1q and tumor necrosis factor related protein 1 protein-coding 111615 Xmv49 Xmv-49 - - xenotropic murine leukemia virus 49 other 13524 Mm.89943 NM_010084 ENSMUSG00000031552 Adam18 Adam27|Dtgn3|Tmdc3|tMDCIII - 8|8 A2 a disintegrin and metallopeptidase domain 18 protein-coding 100035785 Scfpq1 Scf%q1 - - subcutaneous fat pad percentage QTL 1 unknown 108168083 XR_001780947 Gm46414 - - 13 A5|13 predicted gene, 46414 ncRNA 105244593 Gm40183 - - 3|3 predicted gene, 40183 ncRNA 665174 XM_975056 Gm11543 - - 11 D|11 predicted gene 11543 protein-coding 16706 Mm.4745 NM_013571 ENSMUSG00000018334 Ksr1 AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1 - 11 B5|11 46.74 cM kinase suppressor of ras 1 protein-coding 108167901 XR_001780212 LOC108167901 - - 11 B1.3 uncharacterized LOC108167901 ncRNA 111595 Pmv50 Pmv-50 - - polytropic murine leukemia virus 50 other 67031 Mm.44858 NM_025924 ENSMUSG00000038398 Upf3a 2600001C03Rik|4930546M19Rik|RENT3A|UPF3 - 8|8 A1.1 UPF3 regulator of nonsense transcripts homolog A (yeast) protein-coding 102636147 Mm.446272 Gm33298 - - 14|14 predicted gene, 33298 ncRNA 16549 Mm.34296 NM_010613 ENSMUSG00000007670 Khsrp 6330409F21Rik|Fbp2|Fubp2|Ksrp - 17 D|17 29.63 cM KH-type splicing regulatory protein protein-coding 630942 Gm7048 - - 5|5 E1 heat shock protein 8 pseudogene pseudo 404586 AL024230 - - - expressed sequence AL024230 unknown 27463 3S - - - DNA segment, 3S unknown 102637668 XR_373694 Gm34421 - - 1 H2.3|1 predicted gene, 34421 ncRNA 97112 Mm.21062 NM_133787 ENSMUSG00000027787 Nmd3 C87860 - 3|3 E1 NMD3 ribosome export adaptor protein-coding 383905 Utp14b-ps1 Gm5280|Tjsd-ps|Utp14B-ps - 3|3 F3 UTP14B small subunit processome component, pseudogene 1 pseudo 100191076 Gm16238 Rpl19-ps - 3|3 G2 ribosomal protein L19 pseudogene pseudo 19453 Rb(1.7)1Rma Rb1Rma - - Robertsonian translocation, Chr 1 and 7, Universita di Roma other 104151 Phmr Phr - - pheromonal response protein-coding 78926 Mm.44591 NM_030228 ENSMUSG00000034201 Gas2l1 4930500E24Rik|D0Jmb1|Gar22|TU-71.1 - 11|11 A1 growth arrest-specific 2 like 1 protein-coding 404329 Mm.377943 NM_207566 ENSMUSG00000075132 Olfr1173 - - 2|2 D olfactory receptor 1173 protein-coding 72881 Mm.261606 NM_028379 ENSMUSG00000001844 Zdhhc4 1810021D01Rik|2900029I10Rik|DHHC-4 - 5|5 G2 zinc finger, DHHC domain containing 4 protein-coding 71154 Mm.410790 4933426K07Rik - - 11|11 RIKEN cDNA 4933426K07 gene ncRNA 18601 Mm.20851 NM_011060 ENSMUSG00000025328 Padi3 AI507004|Pad3|Pdi3|mKIAA4171 - 4 D3|4 72.5 cM peptidyl arginine deiminase, type III protein-coding 116849 Mm.213193 NM_054079 ENSMUSG00000090461 Iltifb IL-22b|IL-TIFb|Il22b - 10|10 D2 interleukin 10-related T cell-derived inducible factor beta protein-coding 22114 Mm.439725 NM_009435 ENSMUSG00000041566 Tssk1 Stk22a|TSK-1|Tsk1|Tssk|Tssk1b - 16 A3|16 11.09 cM testis-specific serine kinase 1 protein-coding 100035805 Brmth10 - - - behavioral response to methamphetamines 10 unknown 102635059 XR_386683 Gm32491 - - 19 C3|19 predicted gene, 32491 ncRNA 243274 Mm.447698 NM_172885 ENSMUSG00000034310 Tmem132d C630028F04Rik - 5|5 G1.2-G1.3 transmembrane protein 132D protein-coding 100417821 Gm14745 - - X|X B DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 pseudogene pseudo 102465651 NR_106042 ENSMUSG00000099131 Mir7074 Gm27603|mmu-mir-7074 - 8|8 D3 microRNA 7074 ncRNA 102632874 Mm.404434 XR_382086 Gm30836 - - 13 A1|13 predicted gene, 30836 ncRNA 100502954 Gm19469 - - 12 B2|12 20.71 cM transformer-2 protein homolog alpha-like pseudo 28248 Mm.103665 NM_013797 ENSMUSG00000041698 Slco1a1 A530084B21|OATP-1|Oatp1|Oatp1a1|Slc21a1 - 6|6 G2 solute carrier organic anion transporter family, member 1a1 protein-coding 544917 Gm17177 - - 13|13 A1 spermatogenesis associated glutamate (E)-rich pseudogene pseudo 74268 Mm.315125 NM_028844 ENSMUSG00000003604 Aven 1700013A01Rik|1700056A21Rik|mAven-L|mAven-S - 2|2 E3 apoptosis, caspase activation inhibitor protein-coding 78789 Mm.244932 NM_026103 ENSMUSG00000031430 Vsig1 1700062D20Rik|4930405J24Rik - X|X F1 V-set and immunoglobulin domain containing 1 protein-coding 102637617 Gm34379 - - 3 E1|3 predicted gene, 34379 pseudo 73398 Mm.252738 NM_028529 ENSMUSG00000015242 Nipsnap3a 1700054F22Rik|AI429120 - 4|4 B2 nipsnap homolog 3A protein-coding 102640927 XR_388732 Gm36874 - - 11 B3|11 predicted gene, 36874 ncRNA 57425 Mm.2548 NM_020562 ENSMUSG00000029409 U90926 - - 5|5 E2 cDNA sequence U90926 ncRNA 61427 D5Mit231 - - 5 24.24 cM DNA segment, Chr 5, Massachusetts Institute of Technology 231 unknown 665860 NM_001111273 Trmt112-ps1 EG665860|Gm7828|Trmt112-ps - 5|5 E2 tRNA methyltransferase 11-2, pseudogene 1 pseudo 102635966 XR_376999 Gm33167 Gm42712 - 5 C3.1|5 predicted gene, 33167 ncRNA 100416377 Gm18082 - - 14|14 E2.1 ribosomal protein S2 pseudogene pseudo 100417544 Gm18678 - - 8|8 C3 RAB11a, member RAS oncogene family pseudogene pseudo 623734 Mm.469840 NM_001102602 ENSMUSG00000092048 Vmn2r85 EG623734 - 10|10 D3 vomeronasal 2, receptor 85 protein-coding 100504136 Gm20082 - - 16|16 10.09 cM predicted gene, 20082 pseudo 105242881 XR_881901 Gm38969 - - 7 A3|7 predicted gene, 38969 ncRNA 109279923 LOC109279923 Mm183 - - VISTA enhancer mm183 biological-region 108169163 XR_001785354 Gm20404 - - 6 E3|6 53.74 cM predicted gene 20404 ncRNA 12801 Mm.7992 NM_007726 ENSMUSG00000044288 Cnr1 CB-R|CB1|CB1R - 4 A5|4 16.28 cM cannabinoid receptor 1 (brain) protein-coding 629114 Mm.389372 NM_001037933 ENSMUSG00000074681 Defb23 EG629114 - 2|2 G3 defensin beta 23 protein-coding 100504660 Gm20336 - - 12 A1.3|12 8.39 cM hippocalcin-like protein 1-like pseudo 11497 Mm.5168 NM_009619 ENSMUSG00000031553 Adam3 Cyrn1|Taz83|tMDC - 8 A2|8 13.09 cM a disintegrin and metallopeptidase domain 3 (cyritestin) protein-coding 12495 Mm.2824 NM_009848 ENSMUSG00000048120 Entpd1 2610206B08Rik|AA408691|Cd39|NTPDase-1 - 19 C3|19 34.25 cM ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 100035492 Bmc10 - - - bone mineral content 10 unknown 100043763 Gm14438 - - 2|2 H4 predicted gene 14438 protein-coding 100039545 XR_387090 ENSMUSG00000072929 Gm15109 - - X F2|X predicted gene 15109 pseudo 100416313 Gm18031 - - 12|12 D1 ribosomal protein S8 pseudogene pseudo 60914 D8Mit93 - - 8 74.69 cM DNA segment, Chr 8, Massachusetts Institute of Technology 93 unknown 75004 4930467D19Rik - - 11|11 RIKEN cDNA 4930467D19 gene protein-coding 85042 D4Mit18 - - 4 6.01 cM DNA segment, Chr 4, Massachusetts Institute of Technology 18 unknown 320587 Mm.384382 NM_001033394 ENSMUSG00000073680 Tmem88b A230069A22Rik - 4|4 E2 transmembrane protein 88B protein-coding 626877 Mm.490744 NR_040256 Gm14405 - - 2|2 H4 predicted gene 14405 pseudo 102638313 Mm.239446 XR_383708 Gm34907 - - 14 E2.3|14 predicted gene, 34907 ncRNA 13012 Mm.20435 NM_009978 ENSMUSG00000027442 Cst8 Cres|Cst-rs1 - 2 G3|2 73.56 cM cystatin 8 (cystatin-related epididymal spermatogenic) protein-coding 259015 Mm.223402 NM_147013 ENSMUSG00000050577 Olfr1038-ps MOR185-3|Olfr1038 - 2|2 D olfactory receptor 1038, pseudogene protein-coding 103266 Mm.335025 NM_001013028 ENSMUSG00000060935 Tmem263 AI597468 - 10|10 C1 transmembrane protein 263 protein-coding 74729 Mm.56539 NM_178391 ENSMUSG00000034639 Setmar 5830404F24Rik|Etet2 - 6|6 E1 SET domain without mariner transposase fusion protein-coding 75506 Mm.48807 1700017I07Rik - - 9|9 RIKEN cDNA 1700017I07 gene protein-coding 24105 Mm.182145 NM_019705 ENSMUSG00000027466 Rbck1 AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3 - 2|2 G3 RanBP-type and C3HC4-type zinc finger containing 1 protein-coding 100418201 Gm19070 - - 1|1 A1 proteasome (prosome, macropain) subunit, alpha type 7 pseudogene pseudo 631037 Mm.441000 NR_033575 Cyp4b1-ps2 Gm12839 - 4|4 D1 cytochrome P450, family 4, subfamily b, polypeptide 1, pseudogene 2 pseudo 664935 Gm7412 EG664935 - 1|1 H1 ribosomal protein L19 pseudogene pseudo 257905 Mm.377294 NM_001011751 ENSMUSG00000062878 Olfr298 MOR219-4 - 7|7 D3 olfactory receptor 298 protein-coding 100037262 Mm.442062 NR_033551 ENSMUSG00000075576 Gm12359 - - 11 D|11 predicted gene 12359 ncRNA 62313 D1Mit292 - - 1 96.28 cM DNA segment, Chr 1, Massachusetts Institute of Technology 292 unknown 102640946 LOC102640946 - - 12 C1 cytochrome c oxidase subunit 6C pseudogene pseudo 15164 Hcm - - - heterochromatin, multiple chromosomes other 219105 Mm.473172 NM_144842 ENSMUSG00000040123 Zmym5 9830124H08Rik - 14|14 C3 zinc finger, MYM-type 5 protein-coding 109279959 LOC109279959 Mm425 - - VISTA enhancer mm425 biological-region 434782 Gm5637 EG434782 - X|X A6 predicted pseudogene 5637 pseudo 14283 Mm.6215 NM_010235 ENSMUSG00000024912 Fosl1 AW538199|Fra1|fra-1 - 19 A|19 4.33 cM fos-like antigen 1 protein-coding 62004 D7Mit362 - - - DNA segment, Chr 7, Massachusetts Institute of Technology 362 unknown 53994 D16Jhu28 186P4.SP6 - - DNA segment, Chr 16, Johns Hopkins University 28 unknown 20208 Mm.148800 NM_009117 ENSMUSG00000074115 Saa1 Saa-1|Saa2 - 7 B3|7 30.54 cM serum amyloid A 1 protein-coding 244885 Mm.358924 NM_173778 ENSMUSG00000046460 Sh2d7 4933412E14Rik - 9|9 A5.3 SH2 domain containing 7 protein-coding 100042431 Gm3841 - - 1|1 C1.3 predicted gene 3841 pseudo 666177 Gm7965 EG666177 - 7|7 A1 suppression of tumorigenicity 13 pseudogene pseudo 667904 Gm8873 EG667904 - 10 D1|10 coiled-coil domain containing 99 pseudogene pseudo 114754 Mors4 - - - modifier of obesity related sterility 4 unknown 102466272 NR_106012 ENSMUSG00000098762 Mir7045 Gm27758|mmu-mir-7045 - 6|6 F2 microRNA 7045 ncRNA 102640862 Gm36829 - - 19|19 predicted gene, 36829 ncRNA 218763 Mm.138039 NM_146052 ENSMUSG00000045201 Lrrc3b BC019794|LRP15 - 14|14 A2 leucine rich repeat containing 3B protein-coding 109279997 LOC109279997 Mm871 - - VISTA enhancer mm871 biological-region 13406 Mm.199008 NM_016779 ENSMUSG00000029307 Dmp1 AG1|AV020965|DMP-1|Dmp|PP - 5 E5|5 50.61 cM dentin matrix protein 1 protein-coding 382236 Mm.100112 NM_001081477 ENSMUSG00000063663 Brwd3 Brodl|D030064D06Rik|Gm596 - X|X D bromodomain and WD repeat domain containing 3 protein-coding 100417569 Gm18692 - - 3|3 A1 von Hippel-Lindau binding protein 1 pseudogene pseudo 26968 Mm.367887 NM_012043 ENSMUSG00000037206 Islr AW553146|Meflin - 9|9 B immunoglobulin superfamily containing leucine-rich repeat protein-coding 75136 Mm.389710 Rsph10b 4930526H21Rik|Rsph10b2 - 5|5 G2 radial spoke head 10 homolog B (Chlamydomonas) protein-coding 22088 Mm.241334 NM_021884 ENSMUSG00000014402 Tsg101 AI255943|CC2 - 7|7 B3 tumor susceptibility gene 101 protein-coding 27492 Mm.359054 D0Kist3 CAG-6 - - DNA segment, KIST 3 unknown 17172 Mm.136217 NM_008553 ENSMUSG00000020052 Ascl1 AI225900|ASH1|Mash1|bHLHa46 - 10|10 C1 achaete-scute family bHLH transcription factor 1 protein-coding 100415969 Gm17844 - - 16|16 C3.3 cyclin G1 pseudogene pseudo 104203 H27 H-27 - - histocompatibility 27 protein-coding 631577 Gm7067 - - 7|7 E2 cyclin B1 pseudogene pseudo 100417158 Gm18430 - - 3|3 G1 crumbs homolog 1 pseudogene pseudo 80517 Mm.142843 NM_020586 ENSMUSG00000008429 Herpud2 5031400M07Rik|AB041580 - 9|9 A4 HERPUD family member 2 protein-coding 320805 Mm.446249 NR_153384 C330018A13Rik - - 5|5 F RIKEN cDNA C330018A13 gene ncRNA 330836 Mm.46749 NM_178798 ENSMUSG00000031904 Slc7a6 AI643885|LAT-2|LAT3|y+LAT-2 - 8|8 D3 solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 protein-coding 67658 4930563F15Rik - - 4|4 RIKEN cDNA 4930563F15 gene protein-coding 382069 Mm.416401 Gm1113 - - 9|9 A4 predicted gene 1113 protein-coding 20336 Mm.265512 NM_009148 ENSMUSG00000029763 Exoc4 C78892|Sec8|Sec8l1 - 6 A3.3|6 14.59 cM exocyst complex component 4 protein-coding 100035924 Mtxe7 - - - methotrextate efficacy 7 unknown 62499 D10Mit148 - - 10 23.24 cM DNA segment, Chr 10, Massachusetts Institute of Technology 148 unknown 100837 Mm.394902 AU023639 - - - expressed sequence AU023639 protein-coding 668499 Ighv1-21 - - 12|12 F2 immunoglobulin heavy variable V1-21 pseudo 791404 6530402D11Rik - - - RIKEN cDNA 6530402D11 gene protein-coding 21000 T(1;10)11Ad T11Ad - - reciprocal translocation, Chr 1 and 10, Adler 11 other 258767 Mm.377682 NM_146771 ENSMUSG00000050023 Olfr1176 MOR174-5 - 2|2 D olfactory receptor 1176 protein-coding 102635359 XR_877949 Gm32718 - - 19 D2|19 predicted gene, 32718 ncRNA 61063 D4Mit235 - - 4 3.57 cM DNA segment, Chr 4, Massachusetts Institute of Technology 235 unknown 100042391 Gm20912 - - Y|Y predicted gene, 20912 protein-coding 381379 Mm.219643 NM_025885 ENSMUSG00000027080 Med19 2410018M14Rik|3110040A13Rik|LCMR1 - 2|2 D mediator complex subunit 19 protein-coding 102635419 XR_869960 Gm32765 - - 7 F3|7 predicted gene, 32765 ncRNA 100043039 XM_006514391 Gm4184 - - 10 C2|10 protein transport protein Sec61 subunit gamma pseudogene 1 pseudo 22793 Mm.282303 NM_011777 ENSMUSG00000029860 Zyx 9530098H06Rik|R75157 - 6|6 B2.1 zyxin protein-coding 102633824 Mm.381268 XR_865967 Gm13261 - - 2 A1|2 7.64 cM predicted gene 13261 ncRNA 667271 XM_011247416 ENSMUSG00000062844 Olfr1458 EG667271|MOR202-24|Olfr1458-ps1 - 19 A|19 olfactory receptor 1458 protein-coding 99189 AU018693 - - - expressed sequence AU018693 protein-coding 52714 D16Ertd778e - - - DNA segment, Chr 16, ERATO Doi 778, expressed unknown 105245004 XR_870728 Gm40519 - - 9 A5.3|9 predicted gene, 40519 ncRNA 105957 AU015449 - - - expressed sequence AU015449 protein-coding 16800 Mm.239329 NM_008487 ENSMUSG00000028059 Arhgef2 AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651 - 3|3 F1 rho/rac guanine nucleotide exchange factor (GEF) 2 protein-coding 635344 Gm7156 EG635344 - 18|18 A1 high mobility group box 3 pseudogene pseudo 319903 Mm.440481 NR_015539 ENSMUSG00000115529 9630013A20Rik lncOL1 - 14|14 D3 RIKEN cDNA 9630013A20 gene ncRNA 105243355 Mm.438045 XR_870569 Gm39302 - - 9 A3|9 predicted gene, 39302 ncRNA 668037 Gm8939 EG668037 - 3|3 A1 death effector domain-containing pseudogene pseudo 102635428 Mm.489382 Gm26614 - - 9|9 predicted gene, 26614 ncRNA 100861635 XR_001784303 Gm21093 - - 4 A5|4 predicted gene, 21093 pseudo 74563 Mm.258798 NM_029004 ENSMUSG00000020374 Rasgef1c 9130006A14Rik - 11|11 B1.3 RasGEF domain family, member 1C protein-coding 94221 Mm.390258 NM_053187 ENSMUSG00000019861 Gopc 2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST - 10|10 B3 golgi associated PDZ and coiled-coil motif containing protein-coding 100035652 Hdlq35 - - - HDL QTL 35 unknown 100416427 Gm18105 - - 16|16 B3 PRAME family member 8 pseudogene pseudo 102465629 NR_106006 ENSMUSG00000098822 Mir7039 Gm27824|mmu-mir-7039 - 5|5 G2 microRNA 7039 ncRNA 100503770 Gm19885 - - 8 C1|8 35.65 cM dynein light chain Tctex-type 3-like pseudo 110663 Tel13p - - - telomeric sequence, Chr 13, centromere end protein-coding 71752 Mm.271923 NM_027901 ENSMUSG00000106864 Gtf3c2 1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011 - 5|5 B1 general transcription factor IIIC, polypeptide 2, beta protein-coding 234967 Mm.138815 NM_172289 ENSMUSG00000043885 Slc36a4 6330573I15Rik|PAT4 - 9|9 A2 solute carrier family 36 (proton/amino acid symporter), member 4 protein-coding 100417025 Gm18368 - - 14|14 D3 predicted gene, 18368 pseudo 71336 Mm.22519 NM_153196 ENSMUSG00000029136 Rbks 5230400M11Rik|AI326806|RBSK|RK - 5|5 B1 ribokinase protein-coding 74761 Mm.159028 NM_024263 ENSMUSG00000029070 Mxra8 1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam - 4 E2|4 87.58 cM matrix-remodelling associated 8 protein-coding 106250 Mm.37719 AI662175 - - - expressed sequence AI662175 protein-coding 102636700 Mm.17604 XR_379632 LOC102636700 - - 9 D uncharacterized LOC102636700 ncRNA 100683 Mm.273570 NM_001081362 ENSMUSG00000045482 Trrap AI481500 - 5|5 G2 transformation/transcription domain-associated protein protein-coding 102631937 XR_001782503 Gm30142 - - 18 B3|18 predicted gene, 30142 ncRNA 383634 Gm5267 EG383634 - 1|1 B heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 105242745 XR_869384 Gm38879 - - 6 E3|6 predicted gene, 38879 ncRNA 102636145 XR_377912 Gm33297 - - 6 D3|6 predicted gene, 33297 ncRNA 329271 Mm.384841 NR_046171 ENSMUSG00000100334 C230024C17Rik C230024C17 - 1|1 G3 RIKEN cDNA C230024C17 gene ncRNA 105053 AW743365 - - - expressed sequence AW743365 unknown 102638539 XR_387885 Gm35076 - - 8 C3|8 predicted gene, 35076 ncRNA 102638678 Gm15959 - - 19|19 56.52 cM predicted gene 15959 pseudo 227627 Mm.44630 NM_153558 ENSMUSG00000062061 Obp2a BC027556|Lcn13 - 2|2 A3 odorant binding protein 2A protein-coding 625181 Gm6562 EG625181 - 13|13 A1 predicted gene 6562 pseudo 435804 Mm.296491 NM_207703 ENSMUSG00000066061 Olfr1335 MOR259-12|MOR259-5|Olfr1334-ps1|Olfr1335-ps1 - 4|4 D2.1 olfactory receptor 1335 protein-coding 105245043 XR_001779252 LOC105245043 - - 9 E3.1 uncharacterized LOC105245043 protein-coding 21345 Mm.283283 NM_011526 ENSMUSG00000032085 Tagln Sm22|Sm22a|Ws310 - 9 A5.2|9 25.36 cM transgelin protein-coding 67405 Mm.64201 NM_024435 ENSMUSG00000019890 Nts 5033428E16Rik|NMN-125|NN|NT|NT/N|NTS1 - 10|10 D1 neurotensin protein-coding 668955 Gm14263 - - 2|2 H3 ribosomal protein S2 pseudogene pseudo 105244097 Gm39771 - - 2|2 predicted gene, 39771 ncRNA 620269 Gm12641 - - 4|4 C5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 108168405 XM_017318318 LOC108168405 - - 19 D3 zinc finger protein 431-like protein-coding 102408 AA517033 - - - expressed sequence AA517033 unknown 17749 Mm.27375 NM_023127 ENSMUSG00000045996 Polr2k ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0 - 15|15 B3.1 polymerase (RNA) II (DNA directed) polypeptide K protein-coding 17997 Mm.2998 NM_008682 ENSMUSG00000019988 Nedd1 - - 10|10 C2 neural precursor cell expressed, developmentally down-regulated gene 1 protein-coding 14466 Mm.5031 NM_008094 ENSMUSG00000028048 Gba GBA1|GC|GCase|GLUC|betaGC - 3 F1|3 39.01 cM glucosidase, beta, acid protein-coding 667264 Gm8545 EG667264 - X|X A7.3 predicted gene 8545 pseudo 100039442 Gm2238 - - 18 A1|18 predicted gene 2238 unknown 676676 Mm.450818 F530104D19Rik - - 19 C2|19 RIKEN cDNA F530104D19 gene protein-coding 545121 Gm5805 EG545121 - 15|15 E1 predicted gene 5805 protein-coding 56609 D7Mgc1 - - - DNA segment, Chr 7, MRC UK Mouse Genome Centre 1 unknown 102632064 XR_391620 Gm30236 - - 7 D1|7 predicted gene, 30236 ncRNA 170644 Mm.66356 NM_026666 ENSMUSG00000039473 Ubn1 1110029L11Rik|2610108L02Rik|AA673476|AW124741 - 16 A1|16 2.49 cM ubinuclein 1 protein-coding 73099 3100003L13Rik - - 8|8 E1 RIKEN cDNA 3100003L13 gene protein-coding 780887 Ighv1-29 - - 12|12 F2 immunoglobulin heavy variable V1-29 pseudo 97565 C87018 - - - expressed sequence C87018 unknown 669557 Gm9463 - - 7|7 A1 predicted gene 9463 pseudo 100042697 Gm11200 - - 11|11 B5 predicted gene 11200 pseudo 67203 Mm.24105 NM_023317 ENSMUSG00000022678 Nde1 2810027M15Rik|AU042936|AW822251|Nude|mNudE - 16|16 A1 nudE neurodevelopment protein 1 protein-coding 100035414 Elorr1 - - 1 57.91 cM ethanol induced loss of righting response 1 unknown 72241 Mm.396148 XR_376115 1700006H20Rik - - 3|3 G3 RIKEN cDNA 1700006H20 gene ncRNA 70617 Mm.317049 NM_027482 ENSMUSG00000050549 Fam241a 2700063A17Rik|5730508B09Rik|C80506 - 3|3 G2 family with sequence similarity 241, member A protein-coding 105245980 XR_875429 Gm41348 - - 15 D3|15 predicted gene, 41348 ncRNA 107986 Mm.389334 NM_028119 ENSMUSG00000002109 Ddb2 2610043A19Rik - 2|2 E1 damage specific DNA binding protein 2 protein-coding 258647 Mm.377612 NM_146653 ENSMUSG00000048693 Olfr435 MOR261-5 - 6|6 B2.1 olfactory receptor 435 protein-coding 666391 Rps8-ps3 EG666391|Gm8078 - 6|6 B3 ribosomal protein S8, pseudogene 3 pseudo 212503 Mm.486735 NM_153783 ENSMUSG00000025464 Paox 2410012F02Rik|AI118225|Pao - 7|7 F4 polyamine oxidase (exo-N4-amino) protein-coding 61627 D8Mit259 - - - DNA segment, Chr 8, Massachusetts Institute of Technology 259 unknown 100217441 NR_028539 ENSMUSG00000080478 Snord23 MBII-115 - 7 A2|7 small nucleolar RNA, C/D box 23 snoRNA 667005 Gm8416 EG667005 - 14|14 A1 cyclin B1 pseudogene pseudo 100034991 Lprq1 - - 5 50.64 cM lipoprotein QTL 1 unknown 102634468 XR_383765 Gm32045 - - 14 E4|14 predicted gene, 32045 ncRNA 74088 Mm.46188 NM_028747 ENSMUSG00000055312 Them7 0610012H03Rik - 2|2 E3 thioesterase superfamily member 7 protein-coding 258666 Mm.377628 NM_146671 ENSMUSG00000058251 Olfr822 MOR113-2 - 10|10 D3 olfactory receptor 822 protein-coding 259034 Mm.377799 NM_147032 ENSMUSG00000109058 Olfr705 MOR283-2 - 7|7 E3 olfactory receptor 705 protein-coding 108168910 LOC108168910 - - 3 H3 ubiquitin-conjugating enzyme E2 L3 pseudogene pseudo 19246 Mm.277916 NM_011201 ENSMUSG00000027540 Ptpn1 PTP-1B|PTP-HA2|PTP1B - 2|2 H3 protein tyrosine phosphatase, non-receptor type 1 protein-coding 17393 Mm.4825 NM_010810 ENSMUSG00000018623 Mmp7 MAT|MMP-7 - 9 A1|9 2.46 cM matrix metallopeptidase 7 protein-coding 17207 Mm.334413 NM_178076 ENSMUSG00000031442 Mcf2l C130040G20Rik|Dbs|Ost|mKIAA0362 - 8|8 A1.1 mcf.2 transforming sequence-like protein-coding 114539 Bbaa9 Bb9 - 9 39.85 cM B.burgdorferi-associated arthritis 9 unknown 100041847 Vmn2r-ps157 - - Y|Y E vomeronasal 2, receptor, pseudogene 157 pseudo 100417665 LOC100417665 - - X|X A4 Fas-activated serine/threonine kinase pseudogene pseudo 100418003 Rpl17-ps11 Gm16207 - 10|10 A1 ribosomal protein L17, pseudogene 11 pseudo 12475 Mm.3460 NM_009841 ENSMUSG00000051439 Cd14 - - 18 B2|18 19.46 cM CD14 antigen protein-coding 78244 Mm.297862 NM_030046 ENSMUSG00000044224 Dnajc21 4930461P20Rik|9930116P15Rik - 15|15 A1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 404522 Olfr1483-ps1 GA_x5J8B7W6KF8-5484703-5484290 - 19|19 A olfactory receptor 1483, pseudogene 1 pseudo 109758 Ntp Caa - - nucleotriphosphatase protein-coding 100217464 Mm.484706 NR_028558 ENSMUSG00000064602 Snora41 MBI-83 - 1 C2|1 small nucleolar RNA, H/ACA box 41 snoRNA 105244421 XR_867141 Gm40030 - - 2 H4|2 predicted gene, 40030 ncRNA 18585 Mm.10812 NM_008804 ENSMUSG00000041119 Pde9a PDE9A1 - 17|17 B1 phosphodiesterase 9A protein-coding 100502695 Mm.100991 NR_155294 ENSMUSG00000097402 Gm17399 - - 9 F3|9 69.92 cM predicted gene, 17399 ncRNA 56284 Mm.276293 NM_026490 ENSMUSG00000030045 Mrpl19 9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15 - 6 C3|6 35.81 cM mitochondrial ribosomal protein L19 protein-coding 106073 Mm.287740 NM_134100 ENSMUSG00000045665 Mfsd5 AA409375|AW556797|D15Mgi27 - 15|15 F3 major facilitator superfamily domain containing 5 protein-coding 100862400 Gm37254 Gm21710 - 1|1 predicted gene, 37254 ncRNA 105245322 XR_001779706 Gm40797 - - 10 D3|10 predicted gene, 40797 ncRNA 383374 Gm10557 - - 18 A1|18 cadherin 11 pseudogene pseudo 100040545 XR_001781222 Gm2832 - - 14|14 B predicted gene 2832 protein-coding 61651 D7Mit300 - - 7 50.95 cM DNA segment, Chr 7, Massachusetts Institute of Technology 300 unknown 73600 Mm.475134 NR_045627 ENSMUSG00000100599 1700120C14Rik - - 15|15 F1 RIKEN cDNA 1700120C14 gene ncRNA 236565 Gm4904 EG236565 - 14|14 A1 ribosomal protein L3 pseudogene pseudo 56278 Mm.296625 NM_019832 ENSMUSG00000021552 Gkap1 42kDa|4933400B15Rik|D13Ertd340e|Gkap42 - 13 B1|13 30.97 cM G kinase anchoring protein 1 protein-coding 102638733 XR_379530 Gm35227 - - 9 B|9 predicted gene, 35227 ncRNA 100313944 Mm.479852 Gm10645 - - 8 C3|8 39.59 cM predicted gene 10645 unknown 751522 NR_030446 ENSMUSG00000070105 Mir495 Mirn495|mir-495|mmu-mir-495 - 12 F1|12 microRNA 495 ncRNA 105245156 XR_873096 Gm40648 - - 13 A1|13 predicted gene, 40648 ncRNA 75863 Mm.109183 NM_029465 ENSMUSG00000074491 Clec4g 4930572L20Rik - 8|8 A1.1 C-type lectin domain family 4, member g protein-coding 329941 Mm.296327 NM_199473 ENSMUSG00000056174 Col8a2 AI429819 - 4 D2.2|4 60.29 cM collagen, type VIII, alpha 2 protein-coding 16243 In(13)43Rk In43Rk - - inversion, Chr 13, Roderick 43 other 102637207 Gm28442 - - Y A1|Y predicted gene 28442 pseudo 102637985 LOC102637985 - - 3 G1 anaphase-promoting complex subunit 15 pseudogene pseudo 100035983 Modor1 - - - modifier of ocular retardation 1 unknown 71143 4933424L07Rik - - 12|12 RIKEN cDNA 4933424L07 gene protein-coding 105246839 XM_017318319 Gm42061 - - 19 A|19 predicted gene, 42061 protein-coding 100036370 Ibdq2 - - - inflammatory bowel disease QTL 2 unknown 105244377 Gm39996 - - 2|2 predicted gene, 39996 ncRNA 227054 Rpl23a-ps1 EG227054|Gm4851 - 1|1 C1.1 ribosomal protein 23A, pseudogene 1 pseudo 105245655 Gm41081 - - 13 D2.3|13 predicted gene, 41081 pseudo 100126470 Trav3-2 - - 14|14 C2 T cell receptor alpha variable 3-2 pseudo 60828 D4Mit73 - - 4 61.01 cM DNA segment, Chr 4, Massachusetts Institute of Technology 73 unknown 74941 Mm.484588 NR_033598 4930503H13Rik - - X|X F4 gem (nuclear organelle) associated protein 8 pseudogene pseudo 112226 Skts10 - - - skin tumor susceptibility 10 unknown 100503841 Gm19921 - - 8 B1.3|8 29.18 cM uncharacterized protein C12orf41 homolog pseudo 20301 Mm.335946 NM_011336 ENSMUSG00000073888 Ccl27a ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a - 4 A5|4 22.08 cM chemokine (C-C motif) ligand 27A protein-coding 111364 H2 H-2|MHC-II - - histocompatibility-2, MHC other 230451 Mm.55872 XR_376419 Junos - - 4|4 C5 jun proto-oncogene, opposite strand unknown 258069 Mm.376120 NM_001011822 ENSMUSG00000096497 Olfr787 MOR111-10 - 10|10 D3 olfactory receptor 787 protein-coding 16411 Mm.22378 NM_021334 ENSMUSG00000030789 Itgax AI449405|Cd11c|Cr4|N418 - 7|7 F3 integrin alpha X protein-coding 104748 AF070003 - - - expressed sequence AF070003 protein-coding 101055939 XM_017321241 ENSMUSG00000106350 LOC101055939 - - 5 G2 kinesin-like protein KIF19 protein-coding 16174 Mm.20466 NM_010553 ENSMUSG00000026068 Il18rap AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL - 1|1 B interleukin 18 receptor accessory protein protein-coding 62118 D12Mit92 - - 12 29.39 cM DNA segment, Chr 12, Massachusetts Institute of Technology 92 unknown 52747 D4Wsu29e - - - DNA segment, Chr 4, Wayne State University 29, expressed unknown 73422 Mm.311944 NM_175198 ENSMUSG00000042320 Prox2 1700058C01Rik - 12|12 D1 prospero homeobox 2 protein-coding 110398 Evi29 - - - ecotropic viral integration site 29 protein-coding 11702 Mm.253533 NM_009665 ENSMUSG00000075232 Amd1 AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1 - 10 B1|10 21.85 cM S-adenosylmethionine decarboxylase 1 protein-coding 70603 Mm.180333 NM_133250 ENSMUSG00000028687 Mutyh 5730495A01Rik|Mutyha|Mutyhalpha|Mutyhb|Mutyhbeta|Mutyhc|Myh - 4|4 D1 mutY DNA glycosylase protein-coding 21884 Mm.26654 NM_011598 ENSMUSG00000027528 Fabp9 1700007P10Rik|Perf|Perf15|Tlbp - 3|3 A1 fatty acid binding protein 9, testis protein-coding 21114 T(2;12)47Dn T47Dn - - reciprocal translocation, Chr 2 and 12, Davisson 47 other 100035817 Ssta7 - - 9 31.71 cM susceptibility to Salmonella typhimurium antigens 7 unknown 102633557 XR_881611 Gm31353 - - 4 E2|4 predicted gene, 31353 ncRNA 74381 4932430A15Rik - - 4|4 A1 RIKEN cDNA 4932430A15 gene protein-coding 69934 Mm.46761 NM_027266 ENSMUSG00000035601 Trmt10b 2610042J10Rik|Rg9mtd3|Rnmtd3 - 4|4 B1 tRNA methyltransferase 10B protein-coding 102467546 n-TIaat12 n-Ti12 - - nuclear encoded tRNA isoleucine 12 (anticodon GAT) tRNA 237336 Mm.86670 NM_011603 ENSMUSG00000071359 Tbpl1 4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp - 10|10 A3 TATA box binding protein-like 1 protein-coding 67272 Mm.41614 NM_026066 ENSMUSG00000040759 Cmtm5 1500005P16Rik|2900052H21Rik|Cklfsf5 - 14|14 C2 CKLF-like MARVEL transmembrane domain containing 5 protein-coding 102641613 Mm.422886 LOC102641613 - - - H-2 class I histocompatibility antigen, D-D alpha chain protein-coding 108168109 XR_001781022 Gm46436 - - 13 D1|13 predicted gene, 46436 ncRNA 692171 Igkv15-102 - - 6|6 C1 immunoglobulin kappa chain variable 15-102 pseudo 105245537 XR_873599 Gm40982 - - 13 B3|13 predicted gene, 40982 ncRNA 100416366 Gm18073 - - 14|14 C3 ribosomal protein S9 pseudogene pseudo 75145 Mm.399348 NR_040564 4930547E14Rik - - 16|16 C1.3 RIKEN cDNA 4930547E14 gene ncRNA 11474 Mm.5316 NM_013456 ENSMUSG00000006457 Actn3 - - 19 A|19 4.12 cM actinin alpha 3 protein-coding 20500 Mm.274058 NM_022411 ENSMUSG00000001095 Slc13a2 Nadc-1|Nadc1|mNaDC-1 - 11 B5|11 46.74 cM solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 protein-coding 258126 Olfr1452-ps1 MOR202-23 - 19|19 A olfactory receptor 1452, pseudogene 1 pseudo 105244073 XR_865939 Gm39751 - - 2 A1|2 predicted gene, 39751 ncRNA 432535 Gm12005 - - 11|11 A2 predicted gene 12005 protein-coding 102635655 XR_387217 Gm28375 - - 1 C5|1 predicted gene 28375 ncRNA 434879 XM_017318664 Gm5646 EG434879 - X|X F3 predicted pseudogene 5646 protein-coding 61232 D1Mit248 - - 1 23.23 cM DNA segment, Chr 1, Massachusetts Institute of Technology 248 unknown 673151 Gm20784 - - 13 D2.3|13 predicted gene, 20784 pseudo 102634512 XR_866555 Gm13791 - - 2 E1|2 51.37 cM predicted gene 13791 ncRNA 13984 Mm.8017 NM_007957 ENSMUSG00000023443 Esx1 Spx1 - X F1|X 59.1 cM extraembryonic, spermatogenesis, homeobox 1 protein-coding 110274 Lvis1 - - - lymphoid viral insertion site 1 protein-coding 78091 Mm.232526 4921501I09Rik - - 12|12 RIKEN cDNA 4921501I09 gene protein-coding 382052 Gm5159 EG382052 - 8|8 D3 carboxylesterase 2E pseudogene pseudo 102639596 Gm28348 - - Y|Y predicted gene 28348 ncRNA 105243160 XR_870306 Gm39156 - - 8 A3|8 predicted gene, 39156 ncRNA 751531 NR_030497 ENSMUSG00000076214 Mir717 Mirn717|mir-717|mmu-mir-717 - X A5|X microRNA 717 ncRNA 71801 Mm.34351 NM_175175 ENSMUSG00000049969 Plekhf2 1110070J07Rik|AA673237|ZFYVE18 - 4|4 A1 pleckstrin homology domain containing, family F (with FYVE domain) member 2 protein-coding 102637038 Mm.449708 XR_001783493 Banf2os Gm12357 - 2 G1|2 70.92 cM barrier to autointegration factor 2, opposite strand ncRNA 61167 D15Mit13 - - 15 1.84 cM DNA segment, Chr 15, Massachusetts Institute of Technology 13 unknown 619301 Mm.475177 NM_001033805 ENSMUSG00000072571 Tmem253 G630016D24Rik - 14|14 C2 transmembrane protein 253 protein-coding 102467262 n-TDgtc5 n-Td5 - 1 H3|1 nuclear encoded tRNA aspartic acid 5 (anticodon GTC) tRNA 100503328 Mm.445273 Gm19638 - - 2|2 74.32 cM predicted gene, 19638 protein-coding 109497 Grdhq1 - - - growth retardation in Dh male mice, QTL 1 unknown 105245034 XR_870994 Gm40545 - - 9 E3.2|9 predicted gene, 40545 ncRNA 27609 D6Rp2 TB6 - 6 2.45 cM DNA segment, Chr 6, Roswell Park 2 unknown 102631530 Gm21762 - - 13|13 predicted gene, 21762 protein-coding 109393 Livq3 - - - percent liver QTL 3 unknown 68865 Mm.22779 NM_026855 ENSMUSG00000031982 Arv1 1110067L22Rik|AI461928|AW121084 - 8|8 E2 ARV1 homolog, fatty acid homeostasis modulator protein-coding 100035707 Vmmt18 - - - vertebral morphology and mechanical traits 18 unknown 102635567 Mm.233725 NR_153792 Gm32865 - - 16 C3.3|16 predicted gene, 32865 ncRNA 68841 Mm.361995 NR_037954 Lppos 1110054M08Rik|AI481106 - 16|16 B1 LIM domain containing preferred translocation partner in lipoma, opposite strand ncRNA 238896 NM_001281487 ENSMUSG00000078926 Cdc20b EG238896|EG622422 - 13|13 D2.2 cell division cycle 20B protein-coding 100041484 Gm15361 - - X|X A7.3 ubiquitin-conjugating enzyme E2D 3 pseudogene pseudo 668772 Gm9348 EG668772 - 14 E3|14 actin, beta pseudogene pseudo 72778 Mm.30544 NM_176835 ENSMUSG00000038009 Dnajc22 2810451A06Rik|AI506245 - 15|15 F1 DnaJ heat shock protein family (Hsp40) member C22 protein-coding 108086 Mm.381440 NM_080561 ENSMUSG00000045078 Rnf216 2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1 - 5|5 G2 ring finger protein 216 protein-coding 100038384 Mm.381680 XR_140845 Gm10610 - - 7 D3|7 predicted gene 10610 unknown 102640984 XR_881979 Gm28076 - - 7 B2|7 predicted gene 28076 ncRNA 666707 Gm8247 EG666707 - 14|14 C1 predicted gene 8247 protein-coding 76856 Mm.159795 NM_029772 ENSMUSG00000021499 Catsper3 4921522D01Rik|CACRC - 13|13 B1 cation channel, sperm associated 3 protein-coding 108169196 Gm44336 - - 6 E3|6 60S ribosomal protein L23a pseudogene pseudo 13648 Mm.440884 NM_010116 ENSMUSG00000059042 Klk1b9 EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9 - 7 B3|7 28.45 cM kallikrein 1-related peptidase b9 protein-coding 100039202 Gm2098 - - Y A1|Y ubiquitin-activating enzyme E1, Chr Y 1 pseudogene pseudo 380669 Mm.440328 NM_001031772 ENSMUSG00000063804 Lin28b 2810403D23Rik|D030047M17Rik|Lin-28.2 - 10|10 B2 lin-28 homolog B (C. elegans) protein-coding 108168444 Gm46676 - - X C2|X predicted gene, 46676 pseudo 381155 Mm.443985 NM_001033771 9630014M24Rik - - 18|18 B3 RIKEN cDNA 9630014M24 gene unknown 74014 3732407C23Rik - - 12|12 A1.1 RIKEN cDNA 3732407C23 gene protein-coding 102633754 XR_380946 Gm31504 - - 10 D3|10 predicted gene, 31504 ncRNA 61202 D1Mit134 - - 1 41.24 cM DNA segment, Chr 1, Massachusetts Institute of Technology 134 unknown 230582 Mm.44608 NM_175471 ENSMUSG00000028621 Cyb5rl 2810410C14Rik - 4|4 C7 cytochrome b5 reductase-like protein-coding 26414 Mm.39253 NM_009158 ENSMUSG00000046709 Mapk10 C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK - 5|5 E5 mitogen-activated protein kinase 10 protein-coding 76922 1700014F14Rik - - - RIKEN cDNA 1700014F14 gene protein-coding 329706 Gm5104 EG329706 - 3|3 F1 apoptosis inhibitor 5 pseudogene pseudo 20649 Mm.309425 NM_016667 ENSMUSG00000060429 Sntb1 - - 15 D1|15 22.14 cM syntrophin, basic 1 protein-coding 791387 Mm.438061 Gm9869 - - 9 B|9 predicted gene 9869 ncRNA 100416993 Gm18351 - - 7|7 B4 MAS-related GPR, member A4 pseudogene pseudo 108167910 LOC108167910 - - 11 B4 60S ribosomal protein L7a pseudogene pseudo 666337 Obox3-ps5 Gm8053 - 7 A2|7 oocyte specific homeobox 3, pseudogene 5 pseudo 664952 Gm7422 EG664952 - 12|12 B3 high mobility group box 2 pseudogene pseudo 78692 B830042I05Rik - - 8|8 RIKEN cDNA B830042I05 gene protein-coding 18010 Mm.8856 NM_010893 ENSMUSG00000007038 Neu1 AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1 - 17 B1|17 18.48 cM neuraminidase 1 protein-coding 100862280 Gm21614 - - 12|12 predicted gene, 21614 pseudo 100418063 Gm18977 - - 14|14 E3 heterogeneous nuclear ribonucleoprotein D-like pseudogene pseudo 102638282 Gm34883 - - 17|17 predicted gene, 34883 ncRNA 102636363 XR_383683 ENSMUSG00000115822 Gm33450 - - 14 E2.1|14 predicted gene, 33450 ncRNA 668319 NM_001111313 Gm9104 EG668319 - 17|17 B3 ribosomal protein L21 pseudogene pseudo 69102 Mm.359054 1810015C11Rik - - - RIKEN cDNA 1810015C11 gene protein-coding 22330 Mm.279361 NM_009502 ENSMUSG00000021823 Vcl 9430097D22|AA571387|AI462105|AW545629 - 14 A3|14 11.53 cM vinculin protein-coding 27673 D11Moh27 - - 11 59.59 cM DNA segment, Chr 11, KL Mohlke 27 unknown 72025 Mm.23138 1600012P17Rik - - 1|1 H1 RIKEN cDNA 1600012P17 gene unknown 100125875 Cyp4f38-ps Gm20578 - 17|17 B1 cytochrome P450, family 4, subfamily f, member 38, pseudogene pseudo 108168954 Gm12512 - - 4 B3|4 29.66 cM predicted gene 12512 pseudo 13393 Mm.5194 NM_010055 ENSMUSG00000001510 Dlx3 AV237891|Dlx-3 - 11 D|11 59.01 cM distal-less homeobox 3 protein-coding 60790 D3Mit56 - - 3 47.23 cM DNA segment, Chr 3, Massachusetts Institute of Technology 56 unknown 97784 Mm.438542 C76472 - - - expressed sequence C76472 protein-coding 319478 Mm.224814 NM_001004367 ENSMUSG00000044365 Cxxc4 9330210J02Rik|C030003J12Rik|Idax - 3|3 G3 CXXC finger 4 protein-coding 621228 Gm15697 EG621228 - 6|6 B1 kinesin family member 11 pseudogene pseudo 102638474 XR_380289 Gm35028 - - 10 B2|10 predicted gene, 35028 ncRNA 62322 D6Mit107 - - 6 52.31 cM DNA segment, Chr 6, Massachusetts Institute of Technology 107 unknown 12632 Mm.276826 NM_007688 ENSMUSG00000062929 Cfl2 - - 12|12 C1 cofilin 2, muscle protein-coding 105243749 XR_879407 Gm39555 - - Y A1|Y predicted gene, 39555 ncRNA 69371 Mm.252733 NM_027059 ENSMUSG00000030292 Smco2 1700023A16Rik - 6|6 G3 single-pass membrane protein with coiled-coil domains 2 protein-coding 100504561 Mm.410770 NR_040463 ENSMUSG00000111761 9230112J17Rik - - 9|9 B RIKEN cDNA 9230112J17 gene ncRNA 217232 Mm.89845 NM_145436 ENSMUSG00000020687 Cdc27 AI452358|APC3|BC023187 - 11 E1|11 67.79 cM cell division cycle 27 protein-coding 73629 1700123E06Rik - - - RIKEN cDNA 1700123E06 gene protein-coding 640931 Trav13d-1 Gm13978 - 14|14 C2 T cell receptor alpha variable 13D-1 other 102638848 XR_389675 Gm38512 - - 3 A3|3 predicted gene, 38512 ncRNA 105243532 XR_880257 Gm39425 - - 11 E1|11 predicted gene, 39425 ncRNA 11774 Mm.21185 NM_009680 ENSMUSG00000021686 Ap3b1 AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2 - 13 C3|13 49.22 cM adaptor-related protein complex 3, beta 1 subunit protein-coding 110511 Mm.424751 NM_206823 ENSMUSG00000061520 Olfr153 GA_x6K02T2Q125-49033418-49034341|MOR177-5|Olfr4-2|V5 - 2|2 D olfactory receptor 153 protein-coding 723838 NR_029802 ENSMUSG00000065528 Mir320 Mirn320|mir-320|mmu-mir-320 - 14|14 D2 microRNA 320 ncRNA 102636123 Gm33284 - - 16|16 predicted gene, 33284 ncRNA 434426 Gm5619 EG434426 - 9|9 E3.1 ribosomal protein L7A pseudogene pseudo 433490 Mm.23779 NM_001037752 ENSMUSG00000062124 Defb45 Defb27 - 2 H1|2 defensin beta 45 protein-coding 102635381 XR_389629 Gm32738 - - 3 A3|3 predicted gene, 32738 ncRNA 78628 1700074G04Rik - - 11|11 RIKEN cDNA 1700074G04 gene protein-coding 105245863 XR_874978 Gm41251 - - 14 E4|14 predicted gene, 41251 ncRNA 100125319 Vmn2r-ps50 - - 7|7 A1 vomeronasal 2, receptor, pseudogene 50 pseudo 112348 Ednrbm1 k10 - 10 51.15 cM endothelin receptor type B modifier 1 unknown 245615 Mm.246624 NM_177748 ENSMUSG00000057439 Kir3dl2 Kirl2 - X F1|X 58.45 cM killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2 protein-coding 723963 NR_029809 ENSMUSG00000065412 Mir29b-2 Mirn29b-2|mir-29b-2 - 1|1 H6 microRNA 29b-2 ncRNA 227789 Mm.377242 NM_207235 ENSMUSG00000075379 Olfr358 GA_x6K02T2NLDC-33697309-33696317|MOR159-4 - 2|2 B olfactory receptor 358 protein-coding 70110 Mm.45558 NM_027320 ENSMUSG00000010358 Ifi35 2010008K16Rik|AW986054|IFP35|ifi-35 - 11|11 D interferon-induced protein 35 protein-coding 100126456 Trav6n-7 - - 14|14 C2 T cell receptor alpha variable 6N-7 other 22385 Mm.40331 NM_011714 ENSMUSG00000002748 Baz1b C87820|WSTF|Wbscr9 - 5|5 G2 bromodomain adjacent to zinc finger domain, 1B protein-coding 100046638 Gm13338 - - 2|2 A3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like pseudo 55934 Mm.38235 NM_018739 ENSMUSG00000032239 Rp9 PAP-1|Rp9h - 9|9 A3 retinitis pigmentosa 9 (human) protein-coding 404466 Olfr1070-ps1 - - 2|2 D olfactory receptor 1070, pseudogene 1 pseudo 105242675 XR_869165 Gm38826 - - 6 C1|6 predicted gene, 38826 ncRNA 12677 Mm.4405 NM_007701 ENSMUSG00000021239 Vsx2 Chx10|Hox-10|Hox10|or - 12 D1|12 39.28 cM visual system homeobox 2 protein-coding 100418471 Gm19231 - - 3|3 E3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene pseudo 56196 Mm.427162 NM_019551 ENSMUSG00000035958 Tdp2 D13Ertd656e|Ttrap - 13 A3.1|13 10.7 cM tyrosyl-DNA phosphodiesterase 2 protein-coding 102633287 Gm31148 - - 18|18 predicted gene, 31148 ncRNA 102635764 XR_387535 Gm33018 - - 3 A1|3 predicted gene, 33018 ncRNA 100042894 Mm.465204 NM_001105076 ENSMUSG00000090342 Vmn2r46 - - 7|7 A1 vomeronasal 2, receptor 46 protein-coding 11792 Mm.203 NM_009687 ENSMUSG00000035960 Apex1 APE|Apex|HAP1|Ref-1 - 14 C1|14 26.3 cM apurinic/apyrimidinic endonuclease 1 protein-coding 93940 D16Jhu80 134G9.T7 - - DNA segment, Chr 16, Johns Hopkins University 80 unknown 74991 Mm.364748 XR_876151 4930500H12Rik - - 16|16 C3.1 RIKEN cDNA 4930500H12 gene ncRNA 100035488 Ba2 - - - bone area 2 unknown 102634869 XR_001780845 Gm32351 - - 13 C3|13 predicted gene, 32351 ncRNA 102639149 XR_375337 Gm35529 - - 2 H3|2 predicted gene, 35529 ncRNA 105243087 Gm39113 - - 7|7 predicted gene, 39113 ncRNA 13586 Mm.86948 NM_007894 ENSMUSG00000072601 Ear1 EAR-1|ECP 1|Raf1 - 14|14 C1 eosinophil-associated, ribonuclease A family, member 1 protein-coding 53784 D0Tu11 D17Tu11 - - DNA segment, Tubingen 11 unknown 100042367 Gm12074 - - 11|11 A3.3 predicted gene 12074 protein-coding 319826 A130074J08Rik - - 4|4 RIKEN cDNA A130074J08 gene protein-coding 109046 6430501K19Rik - - - RIKEN cDNA 6430501K19 gene protein-coding 16225 In(1)38Rk In38Rk - - inversion, Chr 1, Roderick 38 other 100040820 Gm2984 - - 13 D2.1|13 predicted gene 2984 unknown 109280112 LOC109280112 Mm1336 - - VISTA enhancer mm1336 biological-region 319188 Mm.264645 NM_178202 ENSMUSG00000069308 Hist1h2bp - - 13|13 A3.1 histone cluster 1, H2bp protein-coding 15121 Hba - - - hemoglobin alpha chain complex other 628127 Mm.333111 Igkv14-126 EG628127|Gm6844|IgK|IgM|br9|mga5th128|mga5th137 - 6 C1|6 immunoglobulin kappa variable 14-126 pseudo 28192 D6Wum9 200H7L - - DNA segment, Chr 6, Washington University School of Medicine 9 unknown 218914 Mm.27957 NM_001004436 ENSMUSG00000041408 Wapl A530089A20Rik|BC037674|DIF-2|FOE|Wapal - 14|14 B WAPL cohesin release factor protein-coding 626700 Gm13041 - - 4|4 E1 predicted gene 13041 pseudo 29864 Mm.392580 NM_013876 ENSMUSG00000028557 Rnf11 - - 4|4 C7 ring finger protein 11 protein-coding 94088 Mm.274843 NM_001013616 ENSMUSG00000072244 Trim6 C430046K18Rik|D7Ertd684e - 7 E3|7 55.55 cM tripartite motif-containing 6 protein-coding 102640735 XR_376849 Gm36732 - - 5 B1|5 predicted gene, 36732 ncRNA 620143 Gm6132 EG620143|H3mm18 - 13|13 C1 predicted pseudogene 6132 pseudo 62143 D13Mit79 - - 13 13.14 cM DNA segment, Chr 13, Massachusetts Institute of Technology 79 unknown 666598 Gm8183 EG666598 - 7|7 D3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 545269 Gm5824 EG545269 - 18|18 E4 predicted gene 5824 pseudo 102640422 XR_385517 Gm36486 - - 17 A3.3|17 predicted gene, 36486 ncRNA 320649 9330187G09Rik - - 8|8 RIKEN cDNA 9330187G09 gene protein-coding 62163 D14Mit61 - - 14 26.03 cM DNA segment, Chr 14, Massachusetts Institute of Technology 61 unknown 73016 Mm.221319 NM_028416 ENSMUSG00000040680 Kremen2 2900054E04Rik|Krm2 - 17|17 A3.3 kringle containing transmembrane protein 2 protein-coding 666180 Nsa2-ps2 EG666180|Gm7966 - X|X F1 NSA2 ribosome biogenesis homolog, pseudogene 2 pseudo 13516 Mm.148886 NM_007884 ENSMUSG00000019936 Epyc Dspg3|PG-Lb|SLRR3B - 10 C3|10 50.35 cM epiphycan protein-coding 102633875 Gm31598 - - 12|12 predicted gene, 31598 pseudo 107513 Mm.426670 NM_025965 ENSMUSG00000021427 Ssr1 2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA - 13|13 A3.3 signal sequence receptor, alpha protein-coding 100041424 Gm3329 - - 19|19 A predicted gene 3329 pseudo 74169 1810010K12Rik - - 2|2 RIKEN cDNA 1810010K12 gene ncRNA 333917 Gm14728 Gm1809|Gm866|Hsfy2-ps - X|X A7.2 heat shock transcription factor, Y linked 2 pseudogene pseudo 112109 Bgeq4 - - - body growth early QTL 4 unknown 337924 Mm.425301 NM_177380 ENSMUSG00000054417 Cyp3a44 - - 5 G2|5 85.17 cM cytochrome P450, family 3, subfamily a, polypeptide 44 protein-coding 105974 AU022749 - - - expressed sequence AU022749 unknown 402756 6030495B02Rik - - 1|1 RIKEN cDNA 6030495B02 gene protein-coding 100416464 Gm18127 - - 7|7 B5 lipoic acid synthetase pseudogene pseudo 56364 Mm.23458 NM_019831 ENSMUSG00000031310 Zmym3 9030216B10Rik|AW122925|DXS6673El|Zfp261 - X D|X 44.1 cM zinc finger, MYM-type 3 protein-coding 209462 Mm.458633 NM_172473 ENSMUSG00000038822 Hace1 1700042J16Rik|A730034A22Rik|BC025474 - 10|10 B2 HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 protein-coding 102639987 Mm.417715 XR_001783625 LOC102639987 - - 2 A1 uncharacterized LOC102639987 ncRNA 110120383 LOC110120383 - - - VISTA enhancer mm510 biological-region 100416511 Gm15426 - - 17|17 A1 ribosomal protein L19 pseudogene pseudo 72113 Mm.181387 NM_028105 ENSMUSG00000021044 Adck1 2610005A10Rik - 12|12 D2-D3 aarF domain containing kinase 1 protein-coding 100038358 Mm.353975 NR_033470 ENSMUSG00000102887 Gm10857 AU015850 - 2 A1|2 predicted gene 10857 ncRNA 100526475 NR_037237 ENSMUSG00000093156 Mir3076 mir-3076|mmu-mir-3076 - 14 B|14 18.81 cM microRNA 3076 ncRNA 100039677 Gm2367 - - 1 H6|1 predicted gene 2367 pseudo 61853 D1Mit391 - - 1 52.71 cM DNA segment, Chr 1, Massachusetts Institute of Technology 391 unknown 360220 Mm.425235 NM_025759 ENSMUSG00000070933 Speer4d 4933431D05Rik|SPEER-4D - 5|5 A2 spermatogenesis associated glutamate (E)-rich protein 4D protein-coding 100416691 Gm18198 - - 7|7 A1 zinc finger protein 384 pseudogene pseudo 102640174 XR_389332 Gm36303 - - 5 E2|5 predicted gene, 36303 ncRNA 105246183 XR_876352 Gm41517 - - 17 A1|17 predicted gene, 41517 ncRNA 70238 Mm.228263 NM_027355 ENSMUSG00000014074 Rnf168 3110001H15Rik - 16|16 B3 ring finger protein 168 protein-coding 20673 Sox19 - - - SRY (sex determining region Y)-box 19 protein-coding 15982 Mm.168 NM_013562 ENSMUSG00000001627 Ifrd1 Ifnl|PC4|Tis7 - 12 B1|12 18.06 cM interferon-related developmental regulator 1 protein-coding 234757 Mm.187499 BC024137 - - 8|8 E1 cDNA sequence BC024137 protein-coding 98402 Mm.170983 NM_133816 ENSMUSG00000036206 Sh3bp4 AI594717|AW227605|BOG25 - 1|1 D SH3-domain binding protein 4 protein-coding 19543 Rb(4.12)9Bnr Rb9Bnr - - Robertsonian translocation, Chr 4 and 12, Universitat Bonn/Rhein 9 other 102637228 XR_389369 Gm34097 - - 5 E3|5 predicted gene, 34097 ncRNA 112243 Sluc7 - - 6 11.91 cM susceptibility to lung cancer 7 unknown 676331 Gm9673 - - X|X D prohibitin pseudogene pseudo 102637466 XR_386025 Gm34269 - - 18 A1|18 predicted gene, 34269 ncRNA 30882 Mm.418237 AI256707 - - - EST AI256707 unknown 52760 D7Bwg1289e - - - DNA segment, Chr 7, Brigham & Women's Genetics 1289 expressed unknown 100504073 Gm13804 - - 2|2 53.07 cM predicted gene 13804 pseudo 219150 Mm.344074 NM_177338 ENSMUSG00000021972 Hmbox1 AI451877|AI604847|F830020C16Rik - 14|14 D1 homeobox containing 1 protein-coding 27850 D5Nam12 - - - DNA segment, Chr 5, Notre-Dame de la Paix 12 unknown 217207 Mm.28186 NM_144831 ENSMUSG00000034931 Dhx8 Ddx8|mDEAH6|mKIAA4096 - 11|11 D DEAH (Asp-Glu-Ala-His) box polypeptide 8 protein-coding 54638 Mm.288192 NM_138603 ENSMUSG00000031143 Ccdc22 AI481216|DXImx40e|Ppp1r3f|Sfc22 - X A1.1|X 3.42 cM coiled-coil domain containing 22 protein-coding 51842 Mm.201322 D2Ertd93e - - 2 88.45 cM DNA segment, Chr 2, ERATO Doi 93, expressed unknown 100416390 Gm18094 - - 15|15 D1 predicted gene, 18094 pseudo 112239 Rapop5 - - 15 19.26 cM radiation-induced apoptosis 5 unknown 97188 C88050 - - - expressed sequence C88050 protein-coding 102633280 Gm31142 - - 17|17 predicted gene, 31142 ncRNA 17773 Mm.5133 NM_008639 ENSMUSG00000054764 Mtnr1a MR|MelR - 8 B1.1|8 24.95 cM melatonin receptor 1A protein-coding 12798 Mm.157770 NM_007725 ENSMUSG00000004665 Cnn2 AA408047|AI324678|Calpo2 - 10|10 C1 calponin 2 protein-coding 387139 NR_029737 ENSMUSG00000065442 Mir20a Mir-20|Mirn20|Mirn20a|mir-20a|mmu-mir-20a - 14 E4|14 microRNA 20a ncRNA 667128 Gm8473 EG667128 - 5|5 F RAD21 homolog pseudogene pseudo 66271 Mm.28963 NM_025460 ENSMUSG00000030615 Tmem126a 1810020E01Rik - 7|7 E1 transmembrane protein 126A protein-coding 258698 Mm.223133 NM_146703 ENSMUSG00000060303 Olfr1447 MOR202-3 - 19|19 A olfactory receptor 1447 protein-coding 56554 Mm.458004 NM_020030 ENSMUSG00000078452 Raet1d RAE-1delta - 10|10 A3 retinoic acid early transcript delta protein-coding 27480 91G12L - - - DNA segment, 91G12L unknown 213452 Mm.257120 NM_172516 ENSMUSG00000042046 Dstyk A930019K20Rik|C430014H23Rik|C820013G01|Ripk5 - 1|1 E4 dual serine/threonine and tyrosine protein kinase protein-coding 16309 In(9)26Rk-d In(9)26Rk|In26Rk - - inversion, Chr 9, Roderick 26, distal other 72946 Mm.260690 NM_201226 ENSMUSG00000029028 Lrrc47 2900010D03Rik|AA960559|mKIAA1185 - 4|4 E2 leucine rich repeat containing 47 protein-coding 19720 Mm.314056 NM_009054 ENSMUSG00000021326 Trim27 AW538890|Gm19403|Rfp - 13 A2|13 7.67 cM tripartite motif-containing 27 protein-coding 93858 D10Jor1 - - - DNA segment, Chr 10, Barbara Jordan 1 unknown 103996 Lse - - - low set ears unknown 493103 Dntcs1 - - - dental caries susceptibility 1 unknown 100034852 Iba5 - - 5 20.2 cM induction of brown adipocytes 5 unknown 73230 Mm.335020 NM_028472 ENSMUSG00000031963 Bmper 3110056H04Rik|CV-2|Crim3|Cv2 - 9|9 A3 BMP-binding endothelial regulator protein-coding 62129 D13Mit38 - - 13 17.62 cM DNA segment, Chr 13, Massachusetts Institute of Technology 38 unknown 105245226 XR_871858 Gm40710 - - 10 C1|10 predicted gene, 40710 ncRNA 22305 Mm.302158 NM_009489 ENSMUSG00000066828 Vmn2r37 V2r14 - 7|7 A1 vomeronasal 2, receptor 37 protein-coding 105243373 XR_870611 ENSMUSG00000111056 Gm39317 - - 9 A4|9 predicted gene, 39317 ncRNA 14729 Mm.3519 NM_008148 ENSMUSG00000047953 Gp5 GPV - 16|16 B2 glycoprotein 5 (platelet) protein-coding 52862 D18Bwg1488e - - - DNA segment, Chr 18, Brigham & Women's Genetics 1488 expressed unknown 69393 Mm.491348 NR_045479 ENSMUSG00000099994 1700024B18Rik - - 14|14 E5 RIKEN cDNA 1700024B18 gene ncRNA 16622 Mm.443373 NM_008456 ENSMUSG00000066512 Klk1b5 Klk5|kallikrein|mGK-5 - 7 B3|7 28.73 cM kallikrein 1-related peptidase b5 protein-coding 108168499 Gm46696 - - X C1|X predicted gene, 46696 pseudo 70969 Mm.78499 NR_045758 ENSMUSG00000107214 4930500F04Rik 4931407C17Rik - 5|5 G3 RIKEN cDNA 4930500F04 gene ncRNA 14610 Mm.377084 NM_010289 ENSMUSG00000051056 Gja10 Cx-57|Cx59|cx57 - 4 A5|4 14.25 cM gap junction protein, alpha 10 protein-coding 100043235 Mm.484968 NM_001166639 ENSMUSG00000112856 Gm4305 - - 10 D1|10 predicted gene 4305 protein-coding 100042129 XM_017316324 ENSMUSG00000094021 Gm3685 - - 14 A1|14 predicted gene 3685 protein-coding 101055745 XM_006523269 Gm29721 - - 17 A1|17 predicted gene, 29721 protein-coding 61576 DXMit174 - - X 57.38 cM DNA segment, Chr X, Massachusetts Institute of Technology 174 unknown 52055 Mm.220334 NM_177466 ENSMUSG00000051343 Rab11fip5 9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11 - 6 C3|6 37.35 cM RAB11 family interacting protein 5 (class I) protein-coding 668424 Gm13729 - - 2|2 D nudix (nucleoside diphosphate linked moiety X)-type motif 21 pseudogene pseudo 18647 Mm.389061 NM_011074 ENSMUSG00000028926 Cdk14 Pftk1|mKIAA0834 - 5 A1|5 2.61 cM cyclin-dependent kinase 14 protein-coding 242286 Mm.298546 NM_001080710 ENSMUSG00000071019 Sdr16c6 4833413O15Rik|Gm423 - 4|4 A1 short chain dehydrogenase/reductase family 16C, member 6 protein-coding 27275 Mm.21138 NM_013745 ENSMUSG00000022009 Nufip1 Nufip - 14|14 D3 nuclear fragile X mental retardation protein interacting protein 1 protein-coding 277935 Mm.377873 NM_207160 ENSMUSG00000066239 Olfr519 MOR268-6 - 7|7 E3 olfactory receptor 519 protein-coding 102633329 XR_391002 Gm31180 - - 4 E2|4 predicted gene, 31180 ncRNA 109740 H1 H-1 - - histocompatibility 1 protein-coding 258868 Mm.377728 NM_146868 ENSMUSG00000070311 Olfr894 MOR170-5 - 9|9 A5.1 olfactory receptor 894 protein-coding 108167975 XR_001780538 Gm46330 - - 12 F2|12 predicted gene, 46330 ncRNA 258855 Olfr964-ps1 MOR224-1 - 9|9 A5.1 olfactory receptor 964, pseudogene 1 pseudo 383229 Hba-ps4 EG383229|Gm5226|Hba-4ps|Hba-a4 - 17 13.11 cM|17 A3.3 hemoglobin alpha, pseudogene 4 pseudo 238393 Mm.483584 NM_001033335 ENSMUSG00000066363 Serpina3f 2A1|BC049975 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 3F protein-coding 20906 stu - - - stumbler unknown 102635900 Gm33120 - - 6|6 predicted gene, 33120 ncRNA 21316 T(X;7)1Neu T1Neu - - reciprocal translocation, Chr X and 7, Neuhauser-Klaus 1 other 11798 Mm.259879 NM_009688 ENSMUSG00000025860 Xiap 1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA - X|X A4 X-linked inhibitor of apoptosis protein-coding 230753 Mm.29813 NM_146153 ENSMUSG00000043962 Thrap3 9330151F09Rik|B230333E16Rik|Trap150 - 4|4 D2.2 thyroid hormone receptor associated protein 3 protein-coding 105246009 XR_875536 Gm41375 - - 15 E2|15 predicted gene, 41375 ncRNA 70162 Mm.441212 NR_038038 Hk1os 2210417K05Rik - 10|10 B4 hexokinase 1, opposite strand ncRNA 383619 Mm.131453 NM_001013779 ENSMUSG00000037860 Aim2 Gm1313|Ifi210 - 1|1 H3 absent in melanoma 2 protein-coding 66241 Mm.41773 NM_025439 ENSMUSG00000026411 Tmem9 1500015G18Rik|AW545782 - 1|1 E4 transmembrane protein 9 protein-coding 110271 Ftl1-rs5 - - - ferritin light chain 1, related sequence 5 protein-coding 112360 Carp1 Q2Ucd2-p - - carcass protein in high growth mice 1 unknown 27493 Mm.94141 XR_391494 A230006K03Rik CAG-3|CAG8|D0Kist2|Gm7414 - 7|7 C RIKEN cDNA A230006K03 gene ncRNA 667858 Gm11243 - - 4|4 C3 ribosomal protein L27A pseudogene pseudo 105245793 Gm41185 - - 14|14 predicted gene, 41185 ncRNA 627585 Mm.424988 NM_001039233 Gm13034 - - 4 E1|4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene pseudo 11651 Mm.6645 NM_009652 ENSMUSG00000001729 Akt1 Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac - 12 F1|12 61.2 cM thymoma viral proto-oncogene 1 protein-coding 192156 Mm.28146 NM_138656 ENSMUSG00000006517 Mvd C78718|Mpd - 8|8 E1 mevalonate (diphospho) decarboxylase protein-coding 100124544 Mirb - - - modifier of macrophage iron burden unknown 100504716 Gm20369 - - 15|15 39.78 cM gamma-secretase subunit PEN-2-like pseudo 27274 Mm.74670 NM_013744 ENSMUSG00000020335 Zfp354b Kid2|Tcf17l1|Znf354b - 11|11 B1.3 zinc finger protein 354B protein-coding 85051 DXMit56 - - X 12.1 cM DNA segment, Chr X, Massachusetts Institute of Technology 56 unknown 21234 T(6;13)6Ad T6Ad - - reciprocal translocation, Chr 6 and 13, Adler 6 other 100313514 Mm.296158 Gm9757 - - 9 F3|9 predicted gene 9757 unknown 29849 Mm.88845 NM_019476 ENSMUSG00000044801 Olfr159 MOR262-5|Olfr37e|mOR37e - 4|4 B1 olfactory receptor 159 protein-coding 664850 Gm7368 EG664850 - 9 A5.3|9 5730494N06Rik pseudogene pseudo 654437 C79589 - - 18|18 expressed sequence C79589 unknown 108167693 XR_001779329 Gm46137 - - 9 F4|9 predicted gene, 46137 ncRNA 62896 D10Mit234 - - 10 66.75 cM DNA segment, Chr 10, Massachusetts Institute of Technology 234 unknown 634650 Mm.458435 NM_001039647 ENSMUSG00000092021 Gbp11 EG634650|Gm7141 - 5|5 E5 guanylate binding protein 11 protein-coding 14880 Gtayu2 - - - gene trap AYU 2 unknown 15972 Mm.377092 NM_010507 ENSMUSG00000095270 Ifna9 Ifa9 - 4 C4|4 42.01 cM interferon alpha 9 protein-coding 102632750 Gm28234 - - Y|Y predicted gene 28234 protein-coding 100035982 Raml4 - - 8 34.43 cM radiation induced acute myeloid leukemia 4 unknown 210009 Mm.205514 NM_172480 ENSMUSG00000034617 Mtrr 4732420G08|MSR - 13 B3|13 35.54 cM 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 53037 N15SP6 - - - DNA segment, N15SP6 unknown 100125850 Sh4 - - - sperm hammerhead 4 unknown 692162 Igkv2-93-1 hh24 - 6|6 C1 immunoglobulin kappa chain variable 2-93-1 pseudo 13661 Mm.10724 NM_007914 ENSMUSG00000012350 Ehf 9030625L19Rik|AU019492 - 2|2 E2 ets homologous factor protein-coding 269682 Mm.9392 NM_008146 ENSMUSG00000029502 Golga3 5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27 - 5 F|5 53.36 cM golgi autoantigen, golgin subfamily a, 3 protein-coding 27471 16S - - - DNA segment, 16S unknown 384521 Gm5319 EG384521 - 7|7 A1 calcium binding protein 39 pseudogene pseudo 100041948 Gm9800 - - 14 A1|14 predicted gene 9800 pseudo 100040687 Gm11584 - - 11|11 D ribosomal protein S2 pseudogene pseudo 672450 Mm.423820 LOC672450 - - 6|6 V(kappa) gene product other 102640623 Mm.390772 Gm36642 - - 15|15 predicted gene, 36642 ncRNA 107282 1110034N17Rik AU015644 - - RIKEN cDNA 1110034N17 gene protein-coding 626605 Gm6689 EG626605 - 8|8 A2 ribosomal protein L21 pseudogene pseudo 546834 Gm13281 - - 4|4 C4 interferon-alpha 3 pseudogene pseudo 77953 A930011E06Rik - - 16|16 RIKEN cDNA A930011E06 gene protein-coding 637307 Gm7205 EG637307 - 5 B3|5 lactase pseudogene pseudo 100417121 Gm15618 - - 1|1 G2 basic transcription factor 3 pseudogene pseudo 76293 Mm.272278 NM_029568 ENSMUSG00000042436 Mfap4 1110007F23Rik - 11 B2|11 37.96 cM microfibrillar-associated protein 4 protein-coding 16527 Mm.439936 NM_010608 ENSMUSG00000049265 Kcnk3 TASK|Task-1|cTBAK-1 - 5 B1|5 16.68 cM potassium channel, subfamily K, member 3 protein-coding 62158 D14Mit45 - - 14 20.81 cM DNA segment, Chr 14, Massachusetts Institute of Technology 45 unknown 319185 NM_178199 ENSMUSG00000094338 Hist1h2bl H2b-291a - 13|13 A3.1 histone cluster 1, H2bl protein-coding 258026 Olfr1224-ps1 MOR233-15 - 2|2 E1 olfactory receptor 1224, pseudogene 1 pseudo 19252 Mm.239041 NM_013642 ENSMUSG00000024190 Dusp1 3CH134|MKP1|Ptpn16|U19515|erp|mkp-1 - 17 A3.3|17 13.28 cM dual specificity phosphatase 1 protein-coding 320297 Mm.375866 NR_045161 ENSMUSG00000097182 A830009L08Rik - - 13|13 C3 RIKEN cDNA A830009L08 gene ncRNA 100416693 Gm18200 Gm18203 - 7|7 A1 zinc finger protein 772 pseudogene pseudo 97382 C80256 - - - expressed sequence C80256 protein-coding 50875 Mm.38445 NM_016963 ENSMUSG00000058587 Tmod3 U-Tmod|UTMOD - 9 D|9 42.3 cM tropomodulin 3 protein-coding 73609 Mm.443247 NR_038181 ENSMUSG00000085197 1700125H03Rik 4930510D22Rik - 8|8 B3.3 RIKEN cDNA 1700125H03 gene ncRNA 668534 Gm9227 EG668534 - 12 F2|12 high mobility group box 2 pseudogene pseudo 68697 Mm.491042 NR_040713 ENSMUSG00000097036 1110036E04Rik - - 9|9 C RIKEN cDNA 1110036E04 gene ncRNA 111700 Igl-J - - - immunoglobulin lambda chain, joining region other 667861 Gm8847 EG667861 - 13|13 D1 eukaryotic translation initiation factor 4, gamma 1 pseudogene pseudo 100042939 Mm.374311 NM_001242951 ENSMUSG00000095655 H2al1f Gm14479 - X|X A1.1 H2A histone family member L1F protein-coding 114676 Mm.390292 NR_033601 4930519F09Rik EyeLinc9 - 10|10 A4 pyruvate dehydrogenase E1 alpha 1 pseudogene pseudo 217138 Mm.342551 NM_146026 ENSMUSG00000047040 Prr15l Atad4|BC022765|E230006A12Rik - 11|11 D proline rich 15-like protein-coding 105244581 XR_867730 Gm40173 - - 3 H2|3 predicted gene, 40173 ncRNA 668472 Rpl19-ps10 EG668472|Gm9188 - 7|7 F1 ribosomal protein L19, pseudogene 10 pseudo 433855 Mm.205125 NR_015554 ENSMUSG00000105987 AI506816 - - 5|5 A3 expressed sequence AI506816 ncRNA 102637213 XR_382293 Gm34084 - - 13 A5|13 predicted gene, 34084 ncRNA 100040682 Esd-ps Gm2904 - 14 A1|14 esterase D/formylglutathione hydrolase, pseudogene pseudo 213011 Mm.333558 NM_001033249 ENSMUSG00000030443 Zfp583 BC056221|Znf583 - 7|7 A1 zinc finger protein 583 protein-coding 230597 Mm.196776 NM_183300 ENSMUSG00000034557 Zfyve9 Madhip|NSP|SARA|SMADIP - 4|4 C7 zinc finger, FYVE domain containing 9 protein-coding 320091 Mm.236464 NM_178773 ENSMUSG00000035189 Ano4 A330096O15Rik|Gm65|Tmem16d - 10|10 C1-C2 anoctamin 4 protein-coding 404474 Olfr1088-ps1 GA_x5J8B7W3Y5M-51270-50422 - 2|2 D olfactory receptor 1088, pseudogene 1 pseudo 68612 Mm.89830 NM_026785 ENSMUSG00000001403 Ube2c 1110015A16Rik|D2Ertd695e - 2 H3|2 85.27 cM ubiquitin-conjugating enzyme E2C protein-coding 13589 Mm.143877 NM_007896 ENSMUSG00000027479 Mapre1 5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1 - 2 H1|2 75.95 cM microtubule-associated protein, RP/EB family, member 1 protein-coding 56774 Mm.253984 NM_020049 ENSMUSG00000031089 Slc6a14 1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus - X|X A2 solute carrier family 6 (neurotransmitter transporter), member 14 protein-coding 100042267 XM_006527550 Gm3757 - - X A1.1|X predicted pseudogene 3757 protein-coding 108167940 XR_001780384 Gm11750 - - 11 E2|11 83.31 cM predicted gene 11750 ncRNA 108167343 XR_872566 LOC108167343 - - 12 A1.3 uncharacterized LOC108167343 ncRNA 212085 Mm.78128 NM_198601 ENSMUSG00000022113 Trim52 4921513B05Rik - 14|14 E2.3 tripartite motif-containing 52 protein-coding 114128 Mm.197518 NM_033521 ENSMUSG00000022257 Laptm4b C330023P13Rik|LAPTM4beta - 15|15 B3.1 lysosomal-associated protein transmembrane 4B protein-coding 97910 D13Mgi24 R74881 - - DNA Segment, Chr 13, Mouse Genome Informatics 24 unknown 70644 5730552O08Rik - - 18|18 E3 RIKEN cDNA 5730552O08 gene protein-coding 320027 Mm.44518 NM_177059 ENSMUSG00000036264 Fstl4 B230374F23Rik|SPIG1|mKIAA1061 - 11|11 B1.3 follistatin-like 4 protein-coding 102637653 Gm28106 - - Y|Y predicted gene 28106 ncRNA 74018 Mm.272078 NM_028717 ENSMUSG00000026024 Als2 3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563 - 1|1 C1.3 alsin Rho guanine nucleotide exchange factor protein-coding 72968 2900069G24Rik - - 1|1 RIKEN cDNA 2900069G24 gene protein-coding 102636144 XR_387852 Gm33296 - - 8 C3|8 predicted gene, 33296 ncRNA 16278 In(3)55Rk-d In(3)55Rk|In55Rk - - inversion, Chr 3, Roderick 55, distal other 100038657 Mm.416999 NM_001177581 ENSMUSG00000091060 Myocos 7420461P10Rik - 1 H2.1|1 myocilin opposite strand protein-coding 109279964 LOC109279964 Mm435 - - VISTA enhancer mm435 biological-region 100124555 Vmn2r-ps55 Vmn2r-ps30 - 7|7 B3 vomeronasal 2, receptor, pseudogene 55 pseudo 108168881 XR_001783921 Gm46813 - - 3 F2.1|3 predicted gene, 46813 ncRNA 328192 Mm.364161 9530076L18 - - 13|13 A1 uncharacterized protein 9530076L18 protein-coding 100416067 Gm17901 - - X|X A3.3 arylsulfatase K pseudogene pseudo 100504432 Gm12362 - - 4 A5|4 16.86 cM RING-box protein 2-like pseudo 105246292 Gm41596 - - 17|17 predicted gene, 41596 ncRNA 102632897 Mm.183448 NR_155764 ENSMUSG00000112913 Gm30853 - - 10 B5.1|10 predicted gene, 30853 ncRNA 108168853 Gm43471 - - 3 C|3 60S ribosomal protein L29 pseudogene pseudo 102636735 XR_373760 Gm33725 - - 1 H5|1 predicted gene, 33725 ncRNA 105245629 XR_873950 Gm41058 - - 13 D2.1|13 predicted gene, 41058 ncRNA 100040437 Mm.260288 Gm2769 - - 11 B1.3|11 predicted gene 2769 protein-coding 75857 Mm.109021 NR_040480 ENSMUSG00000102408 4930568G15Rik - - 1|1 H2.2 RIKEN cDNA 4930568G15 gene ncRNA 666031 Gm7899 EG666031 - 3|3 B heat shock protein 8 pseudogene pseudo 97546 C81436 - - - expressed sequence C81436 unknown 67366 Mm.46274 NM_026109 ENSMUSG00000004821 Tmed11 1810008K16Rik - 5|5 F transmembrane p24 trafficking protein 11 protein-coding 66044 Mm.28109 NM_025314 ENSMUSG00000027430 Dtd1 0610006H08Rik|DTD|DUE-B|Hars2 - 2|2 G1 D-tyrosyl-tRNA deacylase 1 protein-coding 493030 Lith12 - - 2 96.21 cM lithogenic gene 12 unknown 70002 Mm.381869 1700028E11Rik - - - RIKEN cDNA 1700028E11 gene ncRNA 17022 Mm.18888 NM_008524 ENSMUSG00000036446 Lum Ldc|SLRR2D - 10 C3|10 50.32 cM lumican protein-coding 238726 Mm.71912 XM_006517506 ENSMUSG00000109228 Fam81b Gm276 - 13|13 C1 family with sequence similarity 81, member B protein-coding 100041062 Mm.489587 NM_001243150 Gm13286 - - 4|4 C4 predicted gene 13286 protein-coding 117223 pogo - - - pogostick protein-coding 102634773 XR_389457 Gm32276 - - 5 E5|5 predicted gene, 32276 ncRNA 75785 Mm.392450 NM_029436 ENSMUSG00000062901 Klhl24 1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082 - 16|16 A3 kelch-like 24 protein-coding 105246503 Gm41785 - - 18|18 predicted gene, 41785 ncRNA 100049570 Mm.288641 Gm10627 - - - predicted gene 10627 unknown 667350 Gm8587 EG667350 - 12|12 D2 predicted pseudogene 8587 pseudo 105245536 XR_873589 Gm40981 - - 13 B3|13 predicted gene, 40981 ncRNA 171205 Mm.222638 NM_134187 ENSMUSG00000061208 Vmn1r8 V1rc32 - 6|6 B3 vomeronasal 1 receptor 8 protein-coding 100036044 Nhq1 - - - non-HDL cholesterol QTL 1 unknown 28212 D6Wum12 242D11L1 - - DNA segment, Chr 6, Washington University School of Medicine 12 unknown 100126006 Ramls1 - - - radiation-induced acute myeloid leukemia sensitivity 1 unknown 666581 Mm.440486 Zfp988 Gm13151 - 4|4 E1 zinc finger protein 988 unknown 80883 Mm.39262 NM_030699 ENSMUSG00000059857 Ntng1 A930010C08Rik|AI853992|Lmnt1 - 3|3 F3 netrin G1 protein-coding 626275 Mm.427116 NR_026853 ENSMUSG00000097610 A930012L18Rik - - 18|18 B3 RIKEN cDNA A930012L18 gene ncRNA 11500 Mm.261495 NM_007402 ENSMUSG00000022056 Adam7 ADAM 7|EAP1|EAPI - 14|14 D1 a disintegrin and metallopeptidase domain 7 protein-coding 102467263 n-TDgtc7 n-Td7 - 1 H3|1 nuclear encoded tRNA aspartic acid 7 (anticodon GTC) tRNA 57248 Mm.358339 NM_020498 ENSMUSG00000022586 Ly6i AI789751|Ly-6I|Ly-6M - 15|15 D3 lymphocyte antigen 6 complex, locus I protein-coding 435815 Mm.439623 NM_001081248 ENSMUSG00000070609 Aadacl4 Gm13177 - 4|4 E1 arylacetamide deacetylase like 4 protein-coding 105243869 Gm39598 - - 1|1 predicted gene, 39598 ncRNA 110773 Hsdr1 Alf|hsdr-1 - - hepatocyte specific developmental regulation 1 protein-coding 492854 Sluc20 - - 8 12.86 cM susceptibility to lung cancer 20 unknown 224703 Mm.311439 NM_145486 ENSMUSG00000079557 March2 9530046H09Rik|MARCH-II - 17|17 B1 membrane-associated ring finger (C3HC4) 2 protein-coding 103358 Mm.338439 AU022077 - - - expressed sequence AU022077 unknown 321019 Mm.265618 NM_183031 ENSMUSG00000051212 Gpr183 Ebi2 - 14|14 E5 G protein-coupled receptor 183 protein-coding 257976 Olfr602-ps1 MOR23-3P - 7|7 E3 olfactory receptor 602, pseudogene 1 pseudo 109490 Cplaq6 - - - circadian period of locomotor activity 6 unknown 664951 Gm7421 - - X A3.1|X predicted gene 7421 pseudo 102636146 XR_383549 Gm27177 - - 14 D2|14 predicted gene 27177 ncRNA 108167634 XR_001779070 Gm46099 - - 1 D|1 predicted gene, 46099 ncRNA 100035034 Arigm7 - - - anti-RBC IgM antibodies 7 unknown 100418040 Gm18962 - - 14|14 C1 actin related protein 2/3 complex, subunit 1A pseudogene pseudo 102635784 XR_375292 Gm33033 - - 2 H3|2 predicted gene, 33033 ncRNA 109280156 LOC109280156 Mm138 - - VISTA enhancer mm138 biological-region 101056012 Gm29263 - - 7 B1|7 predicted gene 29263 pseudo 102636052 XR_380696 Gm33230 - - 10 C2|10 predicted gene, 33230 ncRNA 791366 Gm9973 - - - predicted gene 9973 pseudo 100417436 Gm18611 - - 3|3 A3 heat shock protein 1 (chaperonin) pseudogene pseudo 109280035 LOC109280035 Mm265 - - VISTA enhancer mm265 biological-region 257885 Mm.377283 NM_001011739 ENSMUSG00000096424 Olfr885 MOR162-12 - 9|9 A4 olfactory receptor 885 protein-coding 70747 Mm.27469 NM_027533 ENSMUSG00000027858 Tspan2 6330415F13Rik|B230119D02Rik|tspan-2 - 3|3 F2.2 tetraspanin 2 protein-coding 100135657 Mm.379498 NM_001184969 ENSMUSG00000059626 Rhox3e Rhox3.5|Rhox3d - X|X A3.3 reproductive homeobox 3E protein-coding 56575 156l3T7 - - - DNA segment, 156l3T7 unknown 239611 Mm.486225 NM_207243 Muc19 MUC-19|sld - 15|15 E3 mucin 19 protein-coding 102633727 XR_392539 ENSMUSG00000100532 Gm28225 CH36-337P22.1 - Y D|Y predicted gene 28225 ncRNA 16122 Mm.333124 Igk-V5 B1H12|B4H2|Gal13|M86 - 6 C1|6 immunoglobulin kappa chain variable 5 (V5 family) other 111555 Pmv49 Pmv-49 - - polytropic murine leukemia virus 49 other 105243886 Gm39611 - - 11|11 predicted gene, 39611 ncRNA 102638841 XR_378454 Gm35309 Gm44912 - 7 F1|7 predicted gene, 35309 ncRNA 217698 Mm.484019 NM_145444 ENSMUSG00000042540 Acot5 BC016076|PTE-Ic - 12|12 D1 acyl-CoA thioesterase 5 protein-coding 67197 Mm.293181 NM_026025 ENSMUSG00000022635 Zcrb1 2700088M22Rik|Madp-1 - 15|15 E3 zinc finger CCHC-type and RNA binding motif 1 protein-coding 105247103 XR_881149 Gm42261 - - 4 A3|4 predicted gene, 42261 ncRNA 236781 Mm.269129 NM_181751 ENSMUSG00000051209 Gpr119 - - X|X A5 G-protein coupled receptor 119 protein-coding 100503212 Mm.482980 LOC100503212 - - - uncharacterized LOC100503212 ncRNA 432958 Mm.255105 NR_045279 ENSMUSG00000115520 Gm20740 - - 15|15 D1 predicted gene, 20740 ncRNA 105246308 XR_876930 Gm41610 - - 17 E1.3|17 predicted gene, 41610 ncRNA 27398 Mm.391007 NM_025302 ENSMUSG00000002767 Mrpl2 CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14 - 17|17 C mitochondrial ribosomal protein L2 protein-coding 227059 Mm.233889 NM_172653 ENSMUSG00000025986 Slc39a10 2900042E17Rik|5430433I10|Zip10|mKIAA1265 - 1|1 C1.1 solute carrier family 39 (zinc transporter), member 10 protein-coding 67648 Mm.158166 NM_026292 4930542C12Rik - - 9|9 E1 RIKEN cDNA 4930542C12 gene unknown 493143 Mdmsc1 - - - modifier of muscularity 1 unknown 228875 Mm.21184 NM_144893 ENSMUSG00000017664 Slc35c2 C85957|CGI-15|D2Wsu58e|Ovcov1 - 2 H3|2 85.53 cM solute carrier family 35, member C2 protein-coding 108168292 XR_001781953 Gm46554 - - 16 B2|16 predicted gene, 46554 ncRNA 105243668 XR_878086 Gm39499 - - X A1.3|X predicted gene, 39499 ncRNA 239760 XM_983617 Gm4943 EG239760 - 16|16 B1 predicted pseudogene 4943 protein-coding 259107 Mm.377849 NM_147103 ENSMUSG00000073970 Olfr555 MOR10-1 - 7|7 E3 olfactory receptor 555 protein-coding 629436 Gm6974 EG629436 - 18|18 E1 NSA2 ribosome biogenesis homolog pseudogene pseudo 100038672 Mm.337795 Gm10530 - - - predicted gene 10530 protein-coding 102633779 XR_373283 Gm31525 - - 1 A5|1 predicted gene, 31525 ncRNA 73079 Mm.483149 XR_001778330 3110009M11Rik D7Ssb2|Gm44528 - 7 D3|7 RIKEN cDNA 3110009M11 gene unknown 68026 Mm.351273 NM_026515 ENSMUSG00000040204 Pclaf 2810417H13Rik|AA409629|Ns5apt9|Ns5atp9|PAF15|Paf|mKIAA0101|p15(PAF) - 9|9 C PCNA clamp associated factor protein-coding 30841 Mm.86406 NM_013910 ENSMUSG00000029475 Kdm2b Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2 - 5|5 F lysine (K)-specific demethylase 2B protein-coding 623186 Mm.477438 NM_001134661 ENSMUSG00000063058 Prr23a2 EG623186|Gm6406 - 9|9 E3.3 proline rich 23A, member 2 protein-coding 100417237 Gm18475 - - 8|8 D3 crumbs homolog 1 pseudogene pseudo 100036768 Mm.467767 NR_038097 ENSMUSG00000056687 Gm11696 - - 11 E1|11 predicted gene 11696 ncRNA 212937 Mm.116697 NM_145976 ENSMUSG00000049625 Tifab - - 13|13 B1 TRAF-interacting protein with forkhead-associated domain, family member B protein-coding 74956 Mm.417821 4930484I04Rik - - 19|19 RIKEN cDNA 4930484I04 gene ncRNA 108167713 XR_001779353 Gm46148 - - 9 E3.3|9 predicted gene, 46148 ncRNA 102632628 XR_377141 Gm30654 - - 5 G2|5 predicted gene, 30654 ncRNA 102638637 XR_380292 Gm35154 - - 10 B2|10 predicted gene, 35154 ncRNA 62746 D17Mit209 - - 17 51.9 cM DNA segment, Chr 17, Massachusetts Institute of Technology 209 unknown 632534 Mm.479517 NM_145849 ENSMUSG00000095916 Vmn1r191 V1rh15 - 13|13 A3.1 vomeronasal 1 receptor 191 protein-coding 637800 Gm7222 EG637800 - X|X E3 ribosomal protein S2 pseudogene pseudo 102637473 Gm21771 - - Y|Y predicted gene, 21771 protein-coding 111042 Hsp86-ps2 86kDa|Hsp86-3|Hsp90 - - heat shock protein 86, pseudogene 2 pseudo 111436 Emv33 Bbv|Emv-33 - - endogenous ecotropic MuLV 33 other 105244478 XR_867394 Gm40079 - - 3 F1|3 predicted gene, 40079 ncRNA 22409 Mm.5130 NM_009518 ENSMUSG00000026167 Wnt10a - - 1|1 C4 wingless-type MMTV integration site family, member 10A protein-coding 18362 Mm.222845 NM_146964 ENSMUSG00000096069 Olfr61 IH7|MOR253-1 - 7|7 F4 olfactory receptor 61 protein-coding 100416087 Gm12543 - - 4|4 B3 sorting nexin 2 pseudogene pseudo 100504628 Mm.393275 NR_105063 ENSMUSG00000092545 Gm20319 - - 16 B2|16 18.33 cM predicted gene, 20319 ncRNA 108456 Xmv64 Xmv-64 - - xenotropic murine leukemia virus 64 other 624784 Mm.284252 NR_037190 Gm9855 - - 10|10 B2 thymine DNA glycosylase pseudogene pseudo 100041864 Gm3552 - - 14 C1|14 predicted gene 3552 protein-coding 108167717 XR_001779357 Gm46150 - - 9 F1|9 predicted gene, 46150 ncRNA 109731 Mm.241656 NM_172778 ENSMUSG00000040147 Maob 6330414K01Rik|MAO-B - X A1.2|X 11.88 cM monoamine oxidase B protein-coding 78713 Mm.407726 D530017H19Rik - - 19|19 RIKEN cDNA D530017H19 gene unknown 69126 Mm.389020 NM_001099674 ENSMUSG00000078784 1810022K09Rik AI746582|AL023036 - 3|3 A1 RIKEN cDNA 1810022K09 gene protein-coding 62467 D15Mit263 - - 15 56.13 cM DNA Segment, Chr 15 Massachusetts Institute of Technology 263 unknown 102638670 Mm.460751 NR_155456 4930578G10Rik 1700031K17Rik - 4|4 A5 RIKEN cDNA 4930578G10 gene ncRNA 100043811 XM_001481001 Frg2f12 Gm4664 - 14 E2.3|14 FSHD region gene 2 family member 12 protein-coding 102636328 XR_377194 Gm33427 - - 5 G2|5 predicted gene, 33427 ncRNA 111938 Iap5rb13 - - - intracisternal A-type particle, U5 region, SINE repeat b-13 other 100038440 Mm.330999 Gm16508 - - - predicted gene 16508 unknown 72233 1700023G08Rik - - 7|7 RIKEN cDNA 1700023G08 gene protein-coding 100502584 Gm19264 - - 2|2 74.83 cM predicted gene, 19264 pseudo 18007 Mm.42249 NM_008684 ENSMUSG00000032340 Neo1 2610028H22Rik|AI327052|D930014N22Rik|Igdcc2 - 9|9 B neogenin protein-coding 107885 Mm.486274 NM_026829 ENSMUSG00000066442 Mthfs 1110034I12Rik|2310020H23Rik|AI119695 - 9|9 E3.1 5, 10-methenyltetrahydrofolate synthetase protein-coding 387334 Mm.346928 NM_199067 ENSMUSG00000058568 Defb50 AY387658|BD-50|Defb37|Pbd1|mBD-50 - 8|8 A2 defensin beta 50 protein-coding 12229 Mm.4475 NM_013482 ENSMUSG00000031264 Btk AI528679|xid - X E3|X 56.18 cM Bruton agammaglobulinemia tyrosine kinase protein-coding 209232 Mm.218273 NM_145369 ENSMUSG00000040154 Wfdc5 BC019734|Prg5|Wap1 - 2|2 H3 WAP four-disulfide core domain 5 protein-coding 724064 NR_029766 ENSMUSG00000065560 Mir148b Mirn148b|mir-148b - 15 F3|15 microRNA 148b ncRNA 665844 Gm7818 EG665844 - 17|17 A3.3 zinc finger protein 947 pseudogene pseudo 105246340 Gm41641 - - 17|17 predicted gene, 41641 ncRNA 11595 Mm.358571 NM_007424 ENSMUSG00000030607 Acan Agc|Agc1|CSPCP|Cspg1|b2b183Clo|cmd - 7 D2|7 44.88 cM aggrecan protein-coding 62519 D11Mit129 - - 11 5.51 cM DNA segment, Chr 11, Massachusetts Institute of Technology 129 unknown 621127 Mup-ps14 Gm12559 - 4|4 B3 major urinary protein, pseudogene 14 pseudo 622307 Mm.389654 NM_001252661 ENSMUSG00000070690 5830473C10Rik Arg|Gm17754 - 5|5 E1 RIKEN cDNA 5830473C10 gene protein-coding 100416428 Gm18106 - - X|X A1.1 ribosomal protein L10A pseudogene pseudo 29821 Del(X)4Brd - - - deletion, Chr X, Bradley 4 other 435588 Gm5692 EG435588 - 19|19 A DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene pseudo 101502 Mm.157103 NM_133943 ENSMUSG00000042289 Hsd3b7 AI195443|BB098564 - 7|7 F3 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 protein-coding 83946 Mm.221688 NM_031879 ENSMUSG00000032253 Phip 2810004D21Rik|4632404O06Rik|Ndrp|Wdr11 - 9|9 E2 pleckstrin homology domain interacting protein protein-coding 56043 Mm.251908 NM_018859 ENSMUSG00000045410 Akr1e1 1810061I10Rik|Akr1e2 - 13|13 A1 aldo-keto reductase family 1, member E1 protein-coding 100416319 Gm18036 - - 1|1 H4 predicted gene, 18036 pseudo 17350 Mm.486383 NM_026810 ENSMUSG00000032498 Mlh1 1110035C23Rik|AI317206|AI325952|AI561766 - 9 F3|9 60.92 cM mutL homolog 1 protein-coding 100042146 Rpsa-ps3 Gm12049 - 11 A3.2|11 ribosomal protein SA, pseudogene 3 pseudo 62493 D10Mit136 - - 10 62.94 cM DNA segment, Chr 10, Massachusetts Institute of Technology 136 unknown 13038 Mm.272085 NM_007802 ENSMUSG00000028111 Ctsk AI323530|MMS10-Q|Ms10q|catK - 3 F2.1|3 40.74 cM cathepsin K protein-coding 56809 Mm.103489 NM_020273 ENSMUSG00000028901 Gmeb1 1110050A04Rik|AI256615|AI481278 - 4|4 D2.3 glucocorticoid modulatory element binding protein 1 protein-coding 77569 Mm.374778 NM_001001980 ENSMUSG00000037736 Limch1 3732412D22Rik|mKIAA1102 - 5|5 C3.1 LIM and calponin homology domains 1 protein-coding 12821 Mm.1225 NM_007732 ENSMUSG00000025064 Col17a1 BP180|Bpag|Bpag2 - 19 D1|19 40.07 cM collagen, type XVII, alpha 1 protein-coding 72361 Mm.26580 NM_197999 ENSMUSG00000031877 Ces2g 2210023G05Rik|Ces2l - 8|8 D3 carboxylesterase 2G protein-coding 71086 Mm.214134 NR_038025 ENSMUSG00000112627 4933412E12Rik - - 10|10 D2 RIKEN cDNA 4933412E12 gene ncRNA 105244874 XR_869486 Gm40405 - - 6 G1|6 predicted gene, 40405 ncRNA 108168725 LOC108168725 - - 2 A3 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 67534 Mm.260714 NM_001014974 ENSMUSG00000033257 Ttll4 4632407P03Rik|AI451681|mKIAA0173 - 1|1 C4 tubulin tyrosine ligase-like family, member 4 protein-coding 102634016 XR_385904 Gm31704 - - 17 E4|17 predicted gene, 31704 ncRNA 102636048 XR_380269 Gm38485 - - 10 B2|10 predicted gene, 38485 ncRNA 20022 Mm.4896 NM_011293 ENSMUSG00000039771 Polr2j 14.5kDa|Polr2i|Rpb11a|Rpo2-4 - 5|5 G2 polymerase (RNA) II (DNA directed) polypeptide J protein-coding 216976 Mm.477146 NM_001045522 BC030499 BC037104|Sgk494 - 11|11 B5 cDNA sequence BC030499 protein-coding 74672 Mm.359048 4930449A18Rik - - 3|3 D RIKEN cDNA 4930449A18 gene protein-coding 100036194 Chldq4 - - - cholesterol and HDL QTL 4 unknown 208748 Mm.25626 NM_001081135 ENSMUSG00000033361 Prrg3 Gm368 - X|X A7.3 proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) protein-coding 665760 Gm7774 EG665760 - 5|5 G1.1 predicted gene 7774 pseudo 105244206 XR_866458 Gm39856 - - 2 C3|2 predicted gene, 39856 ncRNA 108168448 LOC108168448 - - X C3 prothymosin alpha-like pseudo 78923 Mm.84007 NM_001081328 ENSMUSG00000058152 Chsy3 4833446K15Rik|AI662215 - 18|18 D3 chondroitin sulfate synthase 3 protein-coding 102637577 Mm.446200 XR_376442 LOC102637577 - - 4 C6 uncharacterized LOC102637577 ncRNA 69277 Mm.272470 NM_027017 ENSMUSG00000063364 3300002I08Rik 2900016H11Rik - 2|2 G3 RIKEN cDNA 3300002I08 gene protein-coding 57258 Mm.202747 NM_020506 ENSMUSG00000021952 Xpo4 B430309A01Rik|mKIAA1721 - 14|14 C3 exportin 4 protein-coding 100041126 Vmn2r-ps2 - - 2|2 B vomeronasal 2, receptor, pseudogene 2 pseudo 30056 Mm.207767 NM_013896 ENSMUSG00000021079 Timm9 2810011L15Rik|Tim10a|Timm10 - 12 C2|12 translocase of inner mitochondrial membrane 9 protein-coding 75272 Mm.159483 NM_029230 ENSMUSG00000022002 Erich6b 4930564B18Rik - 14|14 D3 glutamate rich 6B protein-coding 628062 NR_131146 ENSMUSG00000112481 Gm29684 - - 10|10 C2 predicted gene, 29684 ncRNA 22248 Mm.284811 NM_011676 ENSMUSG00000002058 Unc119 D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h - 11 B5|11 46.74 cM unc-119 lipid binding chaperone protein-coding 100416960 Gm18338 - - 12|12 A3 high mobility group box 3 pseudogene pseudo 102639968 XR_390807 Gm36157 - - 4 D2.3|4 predicted gene, 36157 ncRNA 102638035 XR_377207 Gm34700 - - 5 G3|5 predicted gene, 34700 ncRNA 97614 C85542 - - - expressed sequence C85542 unknown 171035 Chab7 - - 5 54.48 cM cholesterol absorption 7 unknown 75772 Mm.159565 NM_029427 ENSMUSG00000018868 Pnpla5 4833426H19Rik|GS2L - 15|15 E2 patatin-like phospholipase domain containing 5 protein-coding 100503669 Gm6134 EG620161 - 6|6 E3 ribosomal protein S29 pseudogene pseudo 67641 Mm.72619 4930505M18Rik - - 7|7 RIKEN cDNA 4930505M18 gene unknown 100312497 Vmn1r-ps50 - - 7 A1|7 6.54 cM vomeronasal 1 receptor, pseudogene 50 pseudo 66755 Mm.431297 NM_025746 ENSMUSG00000073730 4933415F23Rik - - 1|1 A5 RIKEN cDNA 4933415F23 gene protein-coding 102636309 XR_375154 LOC102636309 - - 2 H1 uncharacterized LOC102636309 ncRNA 77631 Mm.410771 NR_131089 ENSMUSG00000097682 4930554H23Rik - - 7|7 C RIKEN cDNA 4930554H23 gene ncRNA 20163 Mm.905 NM_009105 ENSMUSG00000026727 Rsu1 RsuI|rsp-1 - 2|2 A1 Ras suppressor protein 1 protein-coding 70604 Mm.256488 NM_001033155 ENSMUSG00000074212 Dnajb14 5730496F10Rik - 3|3 G3 DnaJ heat shock protein family (Hsp40) member B14 protein-coding 99662 Mm.108491 NM_133867 ENSMUSG00000040600 Eps8l3 AI504489|Eps8r3 - 3|3 F2.3 EPS8-like 3 protein-coding 97296 C79490 - - - expressed sequence C79490 protein-coding 84505 Mm.490259 NM_018877 ENSMUSG00000015697 Setdb1 AU022152|ESET|KMT1E|mKIAA0067 - 3|3 F2.1 SET domain, bifurcated 1 protein-coding 100043853 Gm4691 - - 6 F3|6 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105243852 XR_872254 Gm39584 - - 11 A2|11 predicted gene, 39584 ncRNA 229877 Mm.28893 NM_145544 ENSMUSG00000028149 Rap1gds1 BC011279|GDS1 - 3|3 H1 RAP1, GTP-GDP dissociation stimulator 1 protein-coding 110262 Tel4q - - - telomeric sequence, Chr 4, q arm protein-coding 76668 Mm.30494 NM_029696 ENSMUSG00000025963 Mdh1b 1700124B08Rik|AV255588 - 1|1 C2 malate dehydrogenase 1B, NAD (soluble) protein-coding 105246600 Gm41870 - - 19|19 predicted gene, 41870 ncRNA 105272 Mm.11321 AU017834 - - - expressed sequence AU017834 protein-coding 666108 Gm7933 EG666108 - 1 B|1 PRP3 pre-mRNA processing factor 3 homolog pseudogene pseudo 66787 Mm.248019 NM_178613 ENSMUSG00000044715 Gskip 4933433P14Rik - 12|12 E GSK3B interacting protein protein-coding 63955 Mm.40717 NM_022021 ENSMUSG00000040957 Cables1 Cables|ik3-1 - 18|18 A1 CDK5 and Abl enzyme substrate 1 protein-coding 100042850 Mm.383709 Gm4065 Gm522 - 10 D2|10 predicted gene 4065 ncRNA 100862471 LOC100862471 - - - coatomer subunit delta-like pseudo 102638445 Gm35010 - - 18 B1|18 predicted gene, 35010 pseudo 93844 Hrmt1l2-rs - - - heterogeneous nuclear ribonucleoproteins methyltransferase-like 2 (S. cerevisiae), related sequence protein-coding 108167682 XR_001779277 LOC108167682 - - 9 F1 uncharacterized LOC108167682 ncRNA 380997 Mm.482248 NM_201360 ENSMUSG00000096852 Cyp2d12 9030605E09Rik - 15 E1|15 38.64 cM cytochrome P450, family 2, subfamily d, polypeptide 12 protein-coding 268949 Mm.296301 NM_001033366 ENSMUSG00000073408 Dpcr1 Gm630 - 17|17 B1 diffuse panbronchiolitis critical region 1 (human) protein-coding 218544 Mm.44416 NM_144838 ENSMUSG00000042743 Sgtb C630001O05Rik - 13|13 D1 small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta protein-coding 63011 D19Mit130 - - 19 16.14 cM DNA Segment, Chr 19, Massachusetts Institute of Technology 130 unknown 494124 Mm.483992 NM_001008706 ENSMUSG00000099269 Calm5 AY314008|Scarf2 - 13|13 A1 calmodulin 5 protein-coding 60848 D5Mit66 - - 5 17.27 cM DNA segment, Chr 5, Massachusetts Institute of Technology 66 unknown 258351 Mm.377448 NM_146354 ENSMUSG00000073937 Olfr633 MOR12-5 - 7|7 E3 olfactory receptor 633 protein-coding 791367 Mm.406399 Gm10099 - - - predicted gene 10099 unknown 27219 Mm.26462 NM_013731 ENSMUSG00000017868 Sgk2 AI098171|AW146006|Sgkl - 2|2 H2 serum/glucocorticoid regulated kinase 2 protein-coding 110870 Cirbp-rs1 Cirp-rs1 - - cold inducible RNA binding protein, related sequence 1 protein-coding 108169115 XR_001785046 Gm46941 - - 5 F|5 predicted gene, 46941 ncRNA 102639433 XR_001784529 LOC102639433 - - 4 B3 uncharacterized LOC102639433 ncRNA 102633902 XR_390535 Gm31617 - - 4 B1|4 predicted gene, 31617 ncRNA 102831 Mm.290620 BB181994 - - - expressed sequence BB181994 unknown 102632400 Mm.159300 NR_153346 Gm26689 - - 3 F2.1|3 predicted gene, 26689 ncRNA 70459 2610303A01Rik - - - RIKEN cDNA 2610303A01 gene protein-coding 100504454 Mm.490657 4930573C08Rik - - 15|15 RIKEN cDNA 4930573C08 gene unknown 381921 Mm.259634 NM_001163774 ENSMUSG00000059981 Taok2 1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881 - 7|7 F3 TAO kinase 2 protein-coding 102637806 XM_006529982 LOC102637806 - - 1 D uncharacterized LOC102637806 protein-coding 16772 Mm.303386 NM_008480 ENSMUSG00000032796 Lama1 AA408497|Lama - 17 E1.1|17 38.8 cM laminin, alpha 1 protein-coding 100035833 Cq6 Chol14 - 1 80.33 cM cholesterol QTL 6 unknown 386611 Mm.436547 NM_198251 ENSMUSG00000051956 Rnf133 Greul2 - 6|6 A3.1 ring finger protein 133 protein-coding 97425 Mm.252009 R74871 - - - expressed sequence R74871 unknown 328401 Mm.99528 NM_183032 ENSMUSG00000052382 Rnase9 ESRL|Rak1 - 14|14 C1 ribonuclease, RNase A family, 9 (non-active) protein-coding 78188 Mm.351688 4930539H15Rik - - 11|11 RIKEN cDNA 4930539H15 gene protein-coding 109963 Fre2 - - - Friend erythroleukemia 2 protein-coding 68566 Mm.44241 NM_026769 ENSMUSG00000025468 Caly 0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip - 7|7 F4 calcyon neuron-specific vesicular protein protein-coding 18761 Mm.329993 NM_008859 ENSMUSG00000026778 Prkcq A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq - 2 A1|2 8.42 cM protein kinase C, theta protein-coding 625929 Rps19-ps4 EG625929|Gm6636 - 18|18 B3 ribosomal protein S19, pseudogene 4 pseudo 108168466 XM_017318671 LOC108168466 - - X A3.1 spindlin-2A-like protein-coding 102634273 XR_378503 Gm31897 Gm44728 - 7 F3|7 predicted gene, 31897 ncRNA 16561 Mm.402393 NM_008441 ENSMUSG00000063077 Kif1b A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204 - 4 E2|4 79.05 cM kinesin family member 1B protein-coding 19532 Rb(3.8)2Rma Rb2Rma - - Robertsonian translocation, Chr 3 and 8, Universita di Roma 2 other 100503260 Gm19617 - - 5|5 88.61 cM predicted gene, 19617 ncRNA 102631676 Mm.390065 XR_878949 Gm6360 EG622803 - 8|8 C1 predicted gene 6360 ncRNA 75351 Mm.298009 NR_138570 4930553J12Rik - - 16|16 C3.3 RIKEN cDNA 4930553J12 gene ncRNA 100418056 Gm18970 - - 1|1 E4 malonyl CoA:ACP acyltransferase (mitochondrial) pseudogene pseudo 76390 Mm.267142 NM_001126489 ENSMUSG00000060630 Zfp735 1700012C15Rik - 11|11 B4 zinc finger protein 735 protein-coding 51831 D6Trk1e - - - DNA segment, Chr 6, Tularik 1, expressed unknown 21261 T(7;16)235Dn T235Dn - - reciprocal translocation, Chr 7 and 16, Davisson 235 other 66783 Mm.443256 NM_025765 Aknaos 4933437N03Rik|bM340H1.7 - 4|4 C1 AT-hook transcription factor, opposite strand unknown 111833 Iapls2-38 - - - intracisternal A particle, lymphocyte specific 2-38 other 100504139 Gm16685 - - 3|3 2.02 cM predicted gene, 16685 ncRNA 73309 Mm.276558 NR_131949 Spanxn4 1700047L15Rik - 12|12 C1 SPANX family, member N4 ncRNA 114689 Skull2 E1|QTL-S1.2 - 1 67.71 cM skull morphology 2 unknown 56592 170n17Sp6 - - - DNA segment, 170n17Sp6 unknown 100042577 Mm.429067 XR_391135 Gm3912 - - 7 A1|7 predicted gene 3912 unknown 78100 Mm.206549 NM_145609 ENSMUSG00000041124 Msantd4 8430410K20Rik|Mysantd4 - 9|9 A1 Myb/SANT-like DNA-binding domain containing 4 with coiled-coils protein-coding 109279926 LOC109279926 Mm194 - - VISTA enhancer mm194 biological-region 100861884 Gm21297 - - 12|12 predicted gene, 21297 pseudo 735281 NR_030474 ENSMUSG00000076222 Mir297b Mir|Mirn297b - 2 A1|2 microRNA 297b ncRNA 100526549 NR_037246 ENSMUSG00000093234 Mir3085 mir-3085|mmu-mir-3085 - 19 C3|19 36.07 cM microRNA 3085 ncRNA 171286 Mm.35253 NM_134251 ENSMUSG00000035506 Slc12a8 CCC9|E330020C02Rik - 16|16 B3 solute carrier family 12 (potassium/chloride transporters), member 8 protein-coding 102640848 XR_378298 Gm36817 - - 7 D3|7 predicted gene, 36817 ncRNA 338363 Mm.271567 NM_178801 ENSMUSG00000049411 Tmem241 6030446N20Rik - 18|18 A1 transmembrane protein 241 protein-coding 105245285 Mm.400114 XR_872030 Gm40761 - - 10 D1|10 predicted gene, 40761 ncRNA 54131 Mm.3960 NM_016849 ENSMUSG00000003184 Irf3 C920001K05Rik|IRF-3 - 7|7 B3 interferon regulatory factor 3 protein-coding 18782 Mm.71913 NM_011109 ENSMUSG00000041202 Pla2g2d GIID|GIID sPLA2|PLA2IID|Splash|mGIID|sPLA2-IID - 4 D3|4 70.57 cM phospholipase A2, group IID protein-coding 69940 Mm.403233 NM_027270 ENSMUSG00000036435 Exoc1 2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p - 5 C3.3|5 exocyst complex component 1 protein-coding 102635476 Gm32805 - - 7|7 predicted gene, 32805 ncRNA 100417820 Gm15379 - - X|X A7.3 zinc finger and SCAN domain containing 12 pseudogene pseudo 61253 D2Mit126 - - 2 49.35 cM DNA segment, Chr 2, Massachusetts Institute of Technology 126 unknown 76571 Mm.247666 NM_029659 ENSMUSG00000019178 Styxl1 1700011C14Rik|Dusp24|Mkstyx - 5|5 G2 serine/threonine/tyrosine interacting-like 1 protein-coding 66993 Mm.436539 NM_025891 ENSMUSG00000028949 Smarcd3 1500001J14Rik|2210409C08Rik|BAF60C - 5|5 A3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein-coding 23825 Mm.358649 NM_011793 ENSMUSG00000024844 Banf1 Baf|Bcrp1|L2bp1/Baf - 19|19 A barrier to autointegration factor 1 protein-coding 102639300 Gm15187 - - X F4|X 73.44 cM predicted gene 15187 pseudo 100043871 Gm4701 - - 17 E1.1|17 predicted gene 4701 pseudo 104210 Aldr4 Ahr-4|Ahr4 - - aldehyde reductase 4 protein-coding 100417287 Gm18505 - - 1|1 G1 ribosomal protein S4, X-linked pseudogene pseudo 108167333 XM_017321198 Gm45944 - - 5 B1|5 predicted gene, 45944 protein-coding 76479 Mm.313687 NM_172429 ENSMUSG00000025024 Smndc1 - - 19|19 D2 survival motor neuron domain containing 1 protein-coding 105245954 XR_875350 Gm41326 - - 15 D1|15 predicted gene, 41326 ncRNA 51859 D19Ggc1e - - - DNA segment, Chr 19, G. Consalez 1, expressed unknown 69370 Mm.426881 NR_131050 ENSMUSG00000107232 1700017L05Rik - - 5|5 C3.3 RIKEN cDNA 1700017L05 gene ncRNA 552903 LOC552903 - - - uncharacterized LOC552903 unknown 432999 Mm.60430 NM_001357954 A930007A09Rik - - 16|16 A1 RIKEN cDNA A930007A09 gene protein-coding 109945 Tex3 - - - testis expressed gene 3 protein-coding 100041179 XM_017321276 ENSMUSG00000095954 Gm3183 - - 5 E3|5 predicted gene 3183 protein-coding 102633009 XR_001784276 Gm30939 - - 4 B1|4 predicted gene, 30939 ncRNA 105246257 XR_876743 Gm41565 - - 17 B1|17 predicted gene, 41565 ncRNA 668570 Gm9249 EG668570 - 12|12 A1.2 predicted gene 9249 pseudo 102639758 XR_387610 LOC102639758 - - 5 F uncharacterized LOC102639758 ncRNA 629471 Gm6977 EG629471 - X|X C1 ferritin heavy chain 1 pseudogene pseudo 30006 D10Jhu11e D10Jhu11 - - DNA segment, Chr 10, Johns Hopkins University 11, expressed unknown 319715 A130004G11Rik - - 1|1 RIKEN cDNA A130004G11 gene protein-coding 492924 Ssial3 - - 7 57.86 cM susceptibility to sialadenitis 3 unknown 668664 XR_001780574 Gm9293 EG668664 - 12|12 A1.3 predicted gene 9293 ncRNA 665176 Gm7527 EG665176 - 18|18 A1 family with sequence similarity 76, member A pseudogene pseudo 320383 Mm.390040 NM_177148 B230317F23Rik - - 8|8 B3.1 RIKEN cDNA B230317F23 gene unknown 74776 Mm.210305 NM_146141 ENSMUSG00000028013 Ppa2 1110013G13Rik|Sid6306 - 3|3 G3 pyrophosphatase (inorganic) 2 protein-coding 71030 Mm.158538 NM_001177389 ENSMUSG00000079460 4933403O08Rik - - X|X E1 RIKEN cDNA 4933403O08 gene protein-coding 100126455 Trav5n-3 Gm17648 - 14|14 C2 T cell receptor alpha variable 5N-3 pseudo 109279999 LOC109279999 Mm888 - - VISTA enhancer mm888 biological-region 61310 D3Mit137 - - 3 34.91 cM DNA segment, Chr 3, Massachusetts Institute of Technology 137 unknown 102632952 LOC102632952 - - 6 F3 RNA-binding protein 39-like pseudo 75532 Mm.351959 XR_873594 1700015C15Rik - - 13|13 B3 RIKEN cDNA 1700015C15 gene unknown 112298 Pgct1 - - 13 35.97 cM primordial germ cell tumor locus 1 unknown 102467358 n-TMcat11 n-Tm11 - 3 F1|3 nuclear encoded tRNA methionine 11 (anticodon CAT) tRNA 105243543 Gm39435 - - 9|9 predicted gene, 39435 ncRNA 61412 D5Mit180 - - 5 11.93 cM DNA segment, Chr 5, Massachusetts Institute of Technology 180 unknown 100040840 Gm2996 - - 7|7 E3 ring finger protein 125 pseudogene pseudo 52941 F.seq - - - DNA segment, F unknown 232047 Gm4873 EG232047 - 6|6 C1 cortactin pseudogene pseudo 100043894 Gm4714 - - 6|6 G1 predicted gene 4714 pseudo 668310 Mm.473792 XM_011247419 ENSMUSG00000108929 Cc2d2b EG668310|Gm338 - 19|19 C3 coiled-coil and C2 domain containing 2B protein-coding 70407 2310061G22Rik - - 2|2 RIKEN cDNA 2310061G22 gene protein-coding 435608 Gm5694 EG435608 - 1|1 A1 acyl-Coenzyme A binding domain containing 5 pseudogene pseudo 668742 XM_001003407 Frg2f3 EG668742|Gm9327 - 14|14 E2.3 FSHD region gene 2 family member 3 protein-coding 105243989 XR_865666 Gm39686 - - 1 H1|1 predicted gene, 39686 ncRNA 107895 Mm.214682 NM_145128 ENSMUSG00000036155 Mgat5 4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV - 1|1 E3 mannoside acetylglucosaminyltransferase 5 protein-coding 56464 Mm.29561 NM_019861 ENSMUSG00000083282 Ctsf AI481912 - 19|19 A cathepsin F protein-coding 100417202 Gm18446 - - 1|1 B predicted gene, 18446 pseudo 114141 Mm.275205 NM_053241 ENSMUSG00000038148 Cldn16 PCLN1|claudin-16 - 16|16 B2 claudin 16 protein-coding 104239 Eam - - - ethanol activity modifier unknown 319915 Mm.21281 A830049F12Rik - - 5|5 B2 RIKEN cDNA A830049F12 gene unknown 434033 Mm.422999 Igkv4-91 Gm10879|kf4 - 6 C1|6 immunoglobulin kappa chain variable 4-91 other 102467523 n-TEttc2 n-Te20 - 3 F2.1|3 nuclear encoded tRNA glutamic acid 2 (anticodon TTC) tRNA 319800 Mm.426083 NM_177002 ENSMUSG00000052562 Slc22a30 AA986766|C730048C13Rik|UST1R - 19|19 A solute carrier family 22, member 30 protein-coding 16523 Mm.1482 NM_008428 ENSMUSG00000030247 Kcnj8 AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1 - 6 G2|6 74.31 cM potassium inwardly-rectifying channel, subfamily J, member 8 protein-coding 105247315 XR_882659 LOC105247315 - - - uncharacterized LOC105247315 ncRNA 102634635 NR_152745 ENSMUSG00000112172 Gm32172 - - 10 A2|10 predicted gene, 32172 ncRNA 105242575 Gm38749 - - 5|5 predicted gene, 38749 ncRNA 12717 ckr - - - chakragati unknown 53689 D0Rp3 RP3 - - DNA segment, Roswell Park 3 unknown 117212 pdpv - - - preduodenal portal vein protein-coding 85201 D11Mit259 - - 11 6.13 cM DNA segment, Chr 11, Massachusetts Institute of Technology 259 unknown 56790 Mm.486375 NM_019995 ENSMUSG00000027751 Supt20 AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP - 3|3 C suppressor of Ty 20 protein-coding 100124369 Traj20 Gm16816 - 14|14 C2 T cell receptor alpha joining 20 other 109279983 LOC109279983 Mm712 - - VISTA enhancer mm712 biological-region 668094 Gm8974 EG668094 - 19|19 C3 predicted gene 8974 pseudo 108168665 XM_017318876 LOC108168665 - - Y E Y-linked testis-specific protein 1-like protein-coding 110794 Mm.236223 NM_207131 ENSMUSG00000052435 Cebpe C/EBPe|C/EBPepsilon|CRP1|Gm294 - 14 C2|14 27.9 cM CCAAT/enhancer binding protein (C/EBP), epsilon protein-coding 108168145 LOC108168145 - - 14 B 60S ribosomal protein L7a pseudogene pseudo 432702 Ighv1-4 Gm16694 - 12|12 F2 immunoglobulin heavy variable 1-4 other 100093637 Trnal-caa - - - transfer RNA leucine (anticodon CAA) tRNA 100125586 Mm.469888 NM_001104592 ENSMUSG00000043897 Vmn2r2 - - 3|3 E1 vomeronasal 2, receptor 2 protein-coding 111712 Mpmv23 Mpmv-23|Xmmv-52|Xp-11 - - modified polytropic murine leukemia virus 23 other 100499523 NR_037306 ENSMUSG00000094253 Mir3471-2 mmu-mir-3471-2 - 4 A1|4 1.97 cM microRNA 3471-2 ncRNA 78299 0610031C06Rik - - - RIKEN cDNA 0610031C06 gene protein-coding 73512 Mm.259519 1700085D22Rik - - 8|8 RIKEN cDNA 1700085D22 gene protein-coding 276941 Gm12129 - - 11|11 A5 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 100526553 NR_037261 ENSMUSG00000094688 Mir467a-7 Mirn467a-7|mmu-mir-467a-7 - 2|2 A1 microRNA 467a-7 ncRNA 102636634 XR_379743 Gm33644 - - 9 E3.3|9 predicted gene, 33644 ncRNA 15407 Mm.890 NM_008266 ENSMUSG00000018973 Hoxb1 Hox-2.9 - 11 D|11 59.86 cM homeobox B1 protein-coding 670775 Mm.384326 NR_033467 ENSMUSG00000084840 Gm11468 - - 2|2 H3 predicted gene 11468 ncRNA 108167544 XR_001778627 Gm28511 - - 8 C5|8 predicted gene 28511 ncRNA 16796 Mm.271967 NM_010688 ENSMUSG00000038366 Lasp1 AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma - 11 D|11 61.1 cM LIM and SH3 protein 1 protein-coding 74491 Mm.394303 5430420F09Rik - - 3|3 RIKEN cDNA 5430420F09 gene protein-coding 61739 D4Mit278 - - 4 52.81 cM DNA segment, Chr 4, Massachusetts Institute of Technology 278 unknown 50887 Mm.298443 NM_016710 ENSMUSG00000031245 Hmgn5 GARP45|NBP-45|Nsbp1 - X|X D high-mobility group nucleosome binding domain 5 protein-coding 108491 Ms96 MMS96 - - minisatellites detected by probe MMS96 other 108169159 XR_001785338 Gm46970 - - 6 D3|6 predicted gene, 46970 ncRNA 75024 Mm.399147 NR_126088 ENSMUSG00000107396 4930425L21Rik 4930473P14Rik - 6|6 G1 RIKEN cDNA 4930425L21 gene ncRNA 60859 D6Mit29 - - 6 37.75 cM DNA segment, Chr 6, Massachusetts Institute of Technology 29 unknown 106150 AI115486 - - - expressed sequence AI115486 unknown 17069 Mm.788 NM_008529 ENSMUSG00000022587 Ly6e Ly67|RIG-E|Sca-2|TSA-1|Tsa1 - 15 D3|15 34.29 cM lymphocyte antigen 6 complex, locus E protein-coding 13335 Del(Y)Sxrb-d - - - deletion, Chr Y, Sxrb, Rlll, Cattanach, distal breakpoint other 231532 Mm.440191 NM_029270 ENSMUSG00000057315 Arhgap24 0610025G21Rik - 5|5 E5 Rho GTPase activating protein 24 protein-coding 100043732 Gm4613 - - 7 A3|7 60S ribosomal protein L37a pseudogene pseudo 96895 C79946 - - - expressed sequence C79946 protein-coding 76872 Mm.101656 NM_029779 ENSMUSG00000022768 Ccdc116 4930432J16Rik - 16|16 A3 coiled-coil domain containing 116 protein-coding 62502 D10Mit164 - - 10 67.32 cM DNA segment, Chr 10, Massachusetts Institute of Technology 164 unknown 668059 Gm8953 EG668059 - 5 A1|5 2-cell-stage, variable group, member 3-like pseudogene pseudo 654470 Mm.28804 NM_001039153 ENSMUSG00000038593 Tctn1 G730031O11Rik|Tect1 - 5|5 F tectonic family member 1 protein-coding 19663 Mm.323997 NM_019733 ENSMUSG00000031586 Rbpms 2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes - 8|8 A4 RNA binding protein gene with multiple splicing protein-coding 110120494 LOC110120494 - - - VISTA enhancer mm1458 biological-region 666979 Gm8399 EG666979 - 13|13 C3 actin, gamma, cytoplasmic 1 pseudogene pseudo 492828 Bmd10 - - 9 46.41 cM bone mineral density 10 unknown 105245433 XR_872824 Gm40889 - - 12 C3|12 predicted gene, 40889 ncRNA 17868 Mm.10728 NM_008653 ENSMUSG00000002100 Mybpc3 - - 2|2 E1 myosin binding protein C, cardiac protein-coding 359913 DXMgc85 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 85 unknown 100417393 Gm18587 - - 9|9 C purine-nucleoside phosphorylase pseudogene pseudo 94217 Mm.441398 NM_053011 ENSMUSG00000049252 Lrp1b 9630004P12Rik|LRP-DIT - 2|2 B low density lipoprotein-related protein 1B (deleted in tumors) protein-coding 93901 D16Jhu36 440L22.T7 - - DNA segment, Chr 16, Johns Hopkins University 36 unknown 100416260 Gm13250 - - 4|4 D3 ribosomal protein 10 pseudogene pseudo 22184 Mm.426178 NM_009453 ENSMUSG00000031370 Zrsr2 35kDa|5031411E02Rik|A230052C13Rik|C77286|U2af1-rs2|URP - X F5|X 75.99 cM zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 protein-coding 384534 Mm.389802 NM_001105191 ENSMUSG00000091930 Vmn2r52 EG384534 - 7 A1|7 vomeronasal 2, receptor 52 protein-coding 243616 Mm.44683 NM_172890 ENSMUSG00000030307 Slc6a11 D930045G19Rik|E130202I16Rik|GAT4|Gabt4|Gat3 - 6 E3|6 52.98 cM solute carrier family 6 (neurotransmitter transporter, GABA), member 11 protein-coding 74918 Mm.317517 NM_029122 ENSMUSG00000026301 Iqca 4930465P12Rik|4930585L22Rik|BB288505|Iqca1 - 1|1 D IQ motif containing with AAA domain protein-coding 66442 Mm.272969 NM_025565 ENSMUSG00000005233 Spc25 2600017H08Rik|2610205L13Rik|Spbc25 - 2|2 C2 SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae) protein-coding 387159 NR_029554 ENSMUSG00000065474 Mir141 Mirn141|mir-141|mmu-mir-141 - 6|6 F2 microRNA 141 ncRNA 100526486 NR_130336 ENSMUSG00000096239 Mir466b-4 mmu-mir-466b-4 - 2 A1|2 8.22 cM microRNA 466b-4 ncRNA 666947 Gm8374 EG666947 - 14|14 A1 predicted gene 8374 pseudo 100417503 Gm18653 - - 18|18 E1 X-linked lymphocyte-regulated 5C pseudogene pseudo 71205 Mm.158617 4933431M02Rik - - 6|6 RIKEN cDNA 4933431M02 gene protein-coding 108358 Emv10 Emv-10 - - endogenous ecotropic MuLV 10 other 102465757 NR_106107 ENSMUSG00000098359 Mir7649 mmu-mir-7649 - 6|6 F3 microRNA 7649 ncRNA 102636741 LOC102636741 - - 2 G1 40S ribosomal protein S13 pseudogene pseudo 17237 Mm.291326 NM_029657 ENSMUSG00000022517 Mgrn1 2610042J20Rik|mKIAA0544|md|nc - 16 A1|16 2.48 cM mahogunin, ring finger 1 protein-coding 102636386 Gm33466 - - 3|3 predicted gene, 33466 ncRNA 74666 Mm.33625 NM_029045 ENSMUSG00000008129 4930432K21Rik - - 8|8 C2 RIKEN cDNA 4930432K21 gene protein-coding 100416007 Gm17867 - - 1|1 G1 myosin IIIB pseudogene pseudo 100737 Mm.220312 NM_178896 ENSMUSG00000051674 Dcun1d4 AI836376 - 5|5 C3.2-C3.3 DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) protein-coding 102634203 Gm31844 - - 5|5 predicted gene, 31844 protein-coding 102467286 n-TCgca49 n-Tc49 - 6 B2.3|6 nuclear encoded tRNA cysteine 49 (anticodon GCA) tRNA 16005 Mm.3135 NM_008340 ENSMUSG00000046070 Igfals ALS|Albs|mKIAA4111 - 17 A3.3|17 12.53 cM insulin-like growth factor binding protein, acid labile subunit protein-coding 56529 Mm.43760 NM_019951 ENSMUSG00000025724 Sec11a 1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895 - 7|7 D3 SEC11 homolog A, signal peptidase complex subunit protein-coding 53897 Mm.103414 NM_016922 ENSMUSG00000049721 Gal3st1 Cst|Gcst - 11|11 A1 galactose-3-O-sulfotransferase 1 protein-coding 67582 Mm.280725 NM_026255 ENSMUSG00000045100 Slc25a26 4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6 - 6|6 D2 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26 protein-coding 257770 Olfr797-ps1 EG257770|GA_x5J8B7W6HFP-3231749-3230798|Gm4999 - 10 D3|10 olfactory receptor 797, pseudogene 1 pseudo 171185 Mm.377166 NM_134167 ENSMUSG00000060699 Vmn1r35 V1rc12 - 6|6 C1 vomeronasal 1 receptor 35 protein-coding 106957 Mm.21688 NM_139143 ENSMUSG00000024270 Slc39a6 Ermelin|Zip6 - 18|18 A2 solute carrier family 39 (metal ion transporter), member 6 protein-coding 102638189 XR_391399 Gm34811 Gm44838 - 7 B3|7 predicted gene, 34811 ncRNA 68346 Mm.35325 NM_178848 ENSMUSG00000054021 Sirt5 0610012J09Rik|1500032M05Rik|AV001953 - 13|13 A4 sirtuin 5 protein-coding 102635258 XR_377783 Gm32644 - - 6 C3|6 predicted gene, 32644 ncRNA 19575 Rb(5.15)4Lub Rb4Lub - - Robertsonian translocation, Chr 5 and 15, Lubeck 4 other 73924 Mm.417825 NR_045957 ENSMUSG00000087460 4930401O12Rik - - 13|13 A3.2 RIKEN cDNA 4930401O12 gene ncRNA 62106 D12Mit51 - - 12 40.94 cM DNA segment, Chr 12, Massachusetts Institute of Technology 51 unknown 102634765 XR_001781178 Gm32269 - - 14 A2|14 predicted gene, 32269 ncRNA 105246396 XR_877297 Gm41688 - - 18 B1|18 predicted gene, 41688 ncRNA 108168304 XR_001781987 ENSMUSG00000071671 LOC108168304 - - 16 A1 60S ribosomal protein L30-like pseudo 71008 Mm.399492 NR_045431 4933401D09Rik - - 17|17 A2 RIKEN cDNA 4933401D09 gene ncRNA 100861646 Gm21103 - - 14|14 predicted gene, 21103 protein-coding 102632056 Gm30229 - - 2|2 predicted gene, 30229 ncRNA 665470 Gm7648 EG665470 - 7|7 A1 vomeronasal 2, receptor 30 pseudogene pseudo 105246966 XR_880578 Gm42156 - - 5 F|5 predicted gene, 42156 ncRNA 108168941 XR_001784289 Gm46853 - - 4 B1|4 predicted gene, 46853 ncRNA 105244632 Gm40212 - - 4|4 predicted gene, 40212 ncRNA 15356 Mm.482102 NM_008254 ENSMUSG00000028672 Hmgcl AW476067|HL - 4 D3|4 68.14 cM 3-hydroxy-3-methylglutaryl-Coenzyme A lyase protein-coding 76897 Mm.422625 NM_178631 ENSMUSG00000039717 Ralyl 0710005M24Rik - 3|3 A1 RALY RNA binding protein-like protein-coding 669309 Gm11796 - - 4|4 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 110255 Tir3 - - 1 67.71 cM trypanosome infection response 3 unknown 52120 Mm.28326 NM_029884 ENSMUSG00000037260 Hgsnat 9430010M12Rik|AW208455|D8Ertd354e|Tmem76 - 8 A2|8 14.22 cM heparan-alpha-glucosaminide N-acetyltransferase protein-coding 105242690 XR_869188 Gm38838 - - 6 C3|6 predicted gene, 38838 ncRNA 112102 Etohc2 - - 2 49.68 cM ethanol consumption 2 unknown 78229 Mm.437838 NR_108103 ENSMUSG00000104900 4930596I21Rik - - 1|1 E4 RIKEN cDNA 4930596I21 gene ncRNA 670832 Rps12-ps10 Gm14059 - 2|2 E5 ribosomal protein S12, pseudogene 10 pseudo 105244015 XR_865747 Gm39707 - - 1 H3|1 predicted gene, 39707 ncRNA 77804 Mm.379584 A930019H14Rik - - 10|10 RIKEN cDNA A930019H14 gene protein-coding 102632366 XR_375756 Gm30458 - - 3 F1|3 predicted gene, 30458 ncRNA 244579 Mm.302755 NM_172913 ENSMUSG00000043668 Tox3 500-9|BC052044|C230068E13|CAGF9|Tnrc9 - 8 C4|8 43.96 cM TOX high mobility group box family member 3 protein-coding 66397 Mm.196592 NM_025535 ENSMUSG00000020386 Sar1b 2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb - 11|11 B1.3 secretion associated Ras related GTPase 1B protein-coding 100302655 Gm14843 - - X|X D anaphase promoting complex subunit 13 pseudogene pseudo 732536 Gt(pU21B)113Imeg Ayu21-B113|Gt(pU21)B113Imeg - - gene trap 113, Institute of Molecular Embryology and Genetics unknown 100036158 Sphsr1 - - 1 81.63 cM spermatocyte heat stress resistance 1 unknown 100534332 Gm21030 - - 8|8 C3 splicing factor 3a, subunit 1 pseudogene pseudo 102634639 XR_380521 Gm32176 - - 10 B5.1|10 predicted gene, 32176 ncRNA 78825 Mm.440132 NM_024282 ENSMUSG00000026502 Desi2 5830417C01Rik|DeSI-2|Fam152a|Pppde1 - 1|1 H4 desumoylating isopeptidase 2 protein-coding 109370 Emo1 - - 1 81.08 cM emotionality 1 unknown 27684 D11Moh11 - - - DNA segment, Chr 11, KL Mohlke 11 unknown 102638199 Mm.80990 XR_377208 1700041I07Rik Gm43741 - 5|5 G3 RIKEN cDNA 1700041I07 gene ncRNA 56299 Mm.10025 NM_019873 ENSMUSG00000033739 Fkbpl DIR1|NG7|Ppiase-X|Wisp39 - 17|17 B1 FK506 binding protein-like protein-coding 72243 Mm.482902 NR_045171 ENSMUSG00000040195 1700012D01Rik - - 10|10 D3 RIKEN cDNA 1700012D01 gene ncRNA 67122 Mm.46539 NM_025980 ENSMUSG00000078202 Nrarp 2700054M22Rik - 2|2 A3 Notch-regulated ankyrin repeat protein protein-coding 100049710 NR_029640 ENSMUSG00000077815 Mir290a Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a - 7 A1|7 microRNA 290a ncRNA 545938 Mm.458180 NM_001024726 ENSMUSG00000020420 Zfp607a 4732475C15Rik|Zfp607 - 7|7 A3 zinc finger protein 607A protein-coding 72289 Mm.298256 NR_002847 ENSMUSG00000092341 Malat1 2210401K01Rik|9430072K23Rik|AI647968|Neat2 - 19|19 A metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) ncRNA 100504277 Rpl31-ps13 Gm9858 - 13 D1|13 53.18 cM ribosomal protein L31, pseudogene 13 pseudo 71746 Mm.110594 NM_023622 ENSMUSG00000040146 Rgl3 1300003D20Rik|mFLJ00153 - 9|9 A3 ral guanine nucleotide dissociation stimulator-like 3 protein-coding 100040458 XM_001474942 ENSMUSG00000095229 Btbd35f26 Gm2784 - X A3.1|X BTB domain containing 35, family member 26 protein-coding 20607 Mm.211411 NM_009218 ENSMUSG00000044933 Sstr3 Smstr-3|Smstr3|sst3 - 15 E1|15 37.55 cM somatostatin receptor 3 protein-coding 105245832 XR_874878 Gm41222 - - 14 E1|14 predicted gene, 41222 ncRNA 105246162 Mm.488330 XR_876255 Gm41496 - - 16 C4|16 predicted gene, 41496 ncRNA 214444 Mm.370777 NM_145990 ENSMUSG00000039298 Cdk5rap2 2900018K03Rik|an|mKIAA1633 - 4|4 C2 CDK5 regulatory subunit associated protein 2 protein-coding 16872 Mm.103624 NM_010712 ENSMUSG00000026468 Lhx4 A330062J17Rik|Gsh-4|Gsh4 - 1 G3|1 67.47 cM LIM homeobox protein 4 protein-coding 628963 Mszf78 - - 11|11 A4 mszf78 protein-coding 67886 Mm.144143 NM_001081360 ENSMUSG00000041570 Camsap2 1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078 - 1|1 E4 calmodulin regulated spectrin-associated protein family, member 2 protein-coding 52360 D8Ertd362e - - 8 57.98 cM DNA segment, Chr 8, ERATO Doi 362, expressed unknown 13590 Mm.378911 NM_010094 ENSMUSG00000038793 Lefty1 AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1 - 1|1 H4 left right determination factor 1 protein-coding 102633596 XR_391160 LOC102633596 - - 7 A1 dnaJ homolog subfamily B member 6 pseudogene pseudo 100416436 Gm18110 - - X|X C3 zinc finger protein 35 pseudogene pseudo 100416102 Gm17916 - - 1|1 E2.3 tubulin, beta 2A pseudogene pseudo 105968 Mm.120798 NR_045996 ENSMUSG00000115944 AU021063 - - 15 F1|15 expressed sequence AU021063 ncRNA 14375 Mm.288809 NM_010247 ENSMUSG00000022471 Xrcc6 70kDa|G22p1|Ku70 - 15 E1|15 38.33 cM X-ray repair complementing defective repair in Chinese hamster cells 6 protein-coding 399614 Mm.406713 C130009A20Rik - - - RIKEN cDNA C130009A20 gene unknown 68073 Mm.119185 NM_026546 ENSMUSG00000039065 Fam173b A930016P21Rik|AA987072 - 15|15 B2 family with sequence similarity 173, member B protein-coding 67442 Mm.305108 NM_026159 ENSMUSG00000056666 Retsat 0610039N19Rik|C80029|MMT-7|Ppsig - 6|6 C1 retinol saturase (all trans retinol 13,14 reductase) protein-coding 627696 Gm12019 - - 11|11 A3.1 ferritin light chain 1 pseudogene pseudo 101056035 LOC101056035 - - 1 C3 60S acidic ribosomal protein P2 pseudogene pseudo 108168381 XR_001782448 Gm46625 - - 18 E1|18 predicted gene, 46625 ncRNA 102636661 Gm33666 - - 15 F1|15 predicted gene, 33666 pseudo 110297 Ftl1-rs9 - - - ferritin light chain 1, related sequence 9 protein-coding 629777 Mm.389328 XR_104757 Zfp335os Gm11458 - 2|2 H3 zinc finger protein 335, opposite strand unknown 100036001 Nhil1 - - - non-heme iron levels 1 unknown 105243693 XR_878128 Gm39521 - - X A7.3|X predicted gene, 39521 ncRNA 77254 Mm.36699 NM_029887 ENSMUSG00000030588 Yif1b 9430029K10Rik|Yip1b - 7|7 B1 Yip1 interacting factor homolog B (S. cerevisiae) protein-coding 18290 Ofa 59kDa - - oncofetal antigen protein-coding 102631643 Gm12203 - - 11|11 31.0 cM predicted gene 12203 ncRNA 671706 Gm9540 - - 9|9 E3.1 predicted gene 9540 pseudo 260299 Mm.178322 NM_153112 ENSMUSG00000054793 Cadm4 Igdf4c|Igsf4c|Tsll2 - 7|7 A3 cell adhesion molecule 4 protein-coding 100035395 Anyt1 - - - anxiety traits 1 unknown 319186 Mm.277425 NM_178200 ENSMUSG00000114279 Hist1h2bm H2b-291b - 13|13 A3.1 histone cluster 1, H2bm protein-coding 100034363 Mm.381904 NM_001080967 ENSMUSG00000089996 Tmsb15b2 Tb15c - X F1|X thymosin beta 15b2 protein-coding 102631622 XR_386544 Gm29917 - - 19 A|19 predicted gene, 29917 ncRNA 69540 Mm.46421 NM_133712 ENSMUSG00000030693 Klk10 2300002A13Rik|NES1|PRSSL1 - 7 B3|7 28.26 cM kallikrein related-peptidase 10 protein-coding 100862012 Gm21399 Gm1842|Prxi-ps2 - 8 E2|8 peroxiredoxin pseudogene 2 pseudo 108211 Pim2-ps1 - - - proviral integration site 2, pseudogene 1 pseudo 70060 Mm.196313 NM_027029 ENSMUSG00000026226 Spata3 1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1 - 1|1 C5 spermatogenesis associated 3 protein-coding 102640252 Mm.405576 XR_001779097 Gm26511 - - 9 A3|9 predicted gene, 26511 ncRNA 105242618 XR_868934 Gm38782 - - 6 A3.3|6 predicted gene, 38782 ncRNA 100035517 Sox10m4 Agln3 - - Sox10Dom modifier 4 unknown 100040654 Gm2885 - - 17 A1|17 predicted gene 2885 ncRNA 666602 Gm12453 - - 4|4 B1 predicted gene 12453 pseudo 244486 Mm.67684 NM_175939 ENSMUSG00000046258 Adam29 - - 8|8 B2 a disintegrin and metallopeptidase domain 29 protein-coding 666957 Gm8379 EG666957 - 14|14 A1 ribosomal protein L3 pseudogene pseudo 320237 Mm.233168 NM_183030 Smim10l2a 6330419J24Rik|Ncrna00086 - X|X A6 small integral membrane protein 10 like 2A protein-coding 70495 Mm.25148 NM_027439 ENSMUSG00000031007 Atp6ap2 (P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR - X|X A1.1 ATPase, H+ transporting, lysosomal accessory protein 2 protein-coding 105247255 Gm42384 - - 7|7 predicted gene, 42384 protein-coding 625360 Mm.327506 NM_001037925 ENSMUSG00000094796 BC147527 - - 13 D2.3|13 cDNA sequence BC147527 protein-coding 102638697 XR_383479 Gm35196 - - 14 D1|14 predicted gene, 35196 ncRNA 105243849 Gm39582 - - 19|19 predicted gene, 39582 ncRNA 105246973 Mm.441257 XR_880600 4833439F03Rik - - 5|5 F RIKEN cDNA 4833439F03 gene ncRNA 73382 Mm.481055 NM_028525 ENSMUSG00000021966 Prss52 1700049K14Rik|Tesp3 - 14|14 D1 protease, serine 52 protein-coding 108525 Ms13-25 Ms13-Hf9 - - minisatellite 13-25 detected by M13 phage probe other 105244003 XR_865721 Gm39698 - - 1 H2.3|1 predicted gene, 39698 ncRNA 378702 Mm.262252 NM_011354 ENSMUSG00000074884 Serf2 C80083|Msmac1l|m4F5rel - 2|2 E5 small EDRK-rich factor 2 protein-coding 102632814 NR_155453 ENSMUSG00000109333 Gm30790 Gm45028 - 16 C3.1|16 predicted gene, 30790 ncRNA 102638376 XR_376686 Gm34957 - - 4 D2.2|4 predicted gene, 34957 ncRNA 110759 Igkj1 Igk-J1 - 6 C1|6 32.04 cM immunoglobulin kappa joining 1 other 15205 Mm.390859 NM_008235 ENSMUSG00000022528 Hes1 Hry|bHLHb39 - 16 B2|16 21.09 cM hes family bHLH transcription factor 1 protein-coding 105242793 XR_880037 Gm38907 - - 11 B5|11 predicted gene, 38907 ncRNA 78524 Mm.417793 XR_879349 C330016L05Rik - - 8|8 E2 RIKEN cDNA C330016L05 gene ncRNA 238418 Ighv14-3 Gm16840 - 12|12 F1 immunoglobulin heavy variable V14-3 other 102467248 n-TRcct1 n-Tr10 - 6 B1|6 nuclear encoded tRNA arginine 1 (anticodon CCT) tRNA 100036569 Mm.460684 XR_382980 Gm16525 - - 14|14 A1 predicted gene, 16525 unknown 100416274 Gm18015 - - 9|9 D zygote arrest 1-like pseudogene pseudo 62904 D10Mit214 - - 10 12.51 cM DNA segment, Chr 10, Massachusetts Institute of Technology 214 unknown 380732 Mm.343952 NM_001033435 ENSMUSG00000040528 Milr1 Allergin-1|Gm885|Mca32 - 11|11 E1 mast cell immunoglobulin like receptor 1 protein-coding 19609 Rb(7.8)12Bnr Rb12Bnr - - Robertsonian translocation, Chr 7 and 8, Universitat Bonn/Rhein 12 other 668924 Gm14127 Gm1846 - 2|2 G3 predicted gene 14127 pseudo 14772 Mm.117076 NM_019497 ENSMUSG00000052783 Grk4 A830025H08Rik|GRK|Gprk2l|Gprk4 - 5 B2|5 17.91 cM G protein-coupled receptor kinase 4 protein-coding 109118686 LOC109118686 - - - Fgf4 promoter region biological-region 100416887 Gm18304 - - 1|1 C5 peptidyl-tRNA hydrolase 2 pseudogene pseudo 668541 Gm9231 EG668541 - 12|12 A1.2 predicted gene 9231 pseudo 105245501 Gm40949 - - 13|13 predicted gene, 40949 ncRNA 76619 Mm.308783 XR_383706 1700087I21Rik - - 14|14 E2.3 RIKEN cDNA 1700087I21 gene ncRNA 70867 Mm.158470 4921521D15Rik - - 3|3 RIKEN cDNA 4921521D15 gene protein-coding 320475 A530082H02Rik - - 2|2 RIKEN cDNA A530082H02 gene protein-coding 258329 Mm.377438 NM_146332 ENSMUSG00000057801 Olfr135 MOR256-48 - 17|17 B1 olfactory receptor 135 protein-coding 492965 Hdlq14 - - 1 69.03 cM HDL QTL 14 unknown 27712 D1Dau20 - - - DNA segment, Chr 1, DA Underhill 20 unknown 108168919 Gm46837 - - 3 F1|3 predicted gene, 46837 pseudo 67332 Mm.45151 NM_026095 ENSMUSG00000020180 Snrpd3 1700043E15Rik|2310009E13Rik|AW046420|SMD3 - 10|10 C1 small nuclear ribonucleoprotein D3 protein-coding 62808 D14Mit199 - - 14 60.15 cM DNA segment, Chr 14, Massachusetts Institute of Technology 199 unknown 108167861 Gm12030 - - 11 A3.1|11 12.9 cM small nuclear ribonucleoprotein G pseudogene pseudo 97250 C81026 - - - expressed sequence C81026 unknown 105246237 XR_876680 Gm41549 - - 17 A3.3|17 predicted gene, 41549 ncRNA 18198 Mm.16148 NM_010944 ENSMUSG00000057280 Musk Mdk4|Mlk|Nsk1|Nsk2|Nsk3 - 4 B3|4 31.87 cM muscle, skeletal, receptor tyrosine kinase protein-coding 100417584 Gm18698 - - 1|1 H6 N-acetylneuraminic acid phosphatase pseudogene pseudo 241520 Mm.330351 NM_175514 ENSMUSG00000048388 Fam171b D430039N05Rik - 2|2 D family with sequence similarity 171, member B protein-coding 108167470 Gm44513 - - 7 A3|7 predicted gene 44513 pseudo 629960 Gm11639 Gm19 - 11|11 E1 predicted gene 11639 protein-coding 14344 Mm.290046 NM_018876 ENSMUSG00000055978 Fut2 - - 7 B3|7 29.41 cM fucosyltransferase 2 protein-coding 100502946 Mm.421284 NR_040367 ENSMUSG00000085495 Gm16796 - - 2 H3|2 91.91 cM predicted gene, 16796 ncRNA 62795 D15Mit171 - - 15 45.02 cM DNA segment, Chr 15, Massachusetts Institute of Technology 171 unknown 320961 Mm.440894 A630026N12Rik - - 2|2 RIKEN cDNA A630026N12 gene protein-coding 385199 Rpl18a-ps4 EG385199|Gm5375 - 7|7 B3 ribosomal protein L18A, pseudogene 4 pseudo 77794 Mm.330088 NM_029981 ENSMUSG00000036040 Adamtsl2 A930008K15Rik|tcp-1 - 2|2 A3 ADAMTS-like 2 protein-coding 102632457 Mm.186660 XR_378115 Gm30524 - - 6 G2|6 predicted gene, 30524 ncRNA 269275 Mm.77751 NM_001033369 ENSMUSG00000026834 Acvr1c ACTR-IC|ACVRLK7|ALK7|Alk-7|C230097P10 - 2|2 C1.1 activin A receptor, type IC protein-coding 107932 Mm.333388 NM_145979 ENSMUSG00000063870 Chd4 9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075 - 6 F2|6 59.28 cM chromodomain helicase DNA binding protein 4 protein-coding 100035595 Rthyd5 - - 15 16.31 cM resistance to thymic deletion 5 unknown 102634847 XR_373886 Gm32334 - - 1 H6|1 predicted gene, 32334 ncRNA 545667 Mm.380025 NM_001099303 ENSMUSG00000059816 Fam159a Shisal2a - 4 C7|4 family with sequence similarity 159, member A protein-coding 108168959 XM_017320496 LOC108168959 - - 4 D3 spidroin-2-like protein-coding 279029 Mm.330079 NM_198628 ENSMUSG00000049897 Stkld1 Gm711|Sgk071 - 2|2 A3 serine/threonine kinase-like domain containing 1 protein-coding 242425 Mm.101909 NM_001081141 ENSMUSG00000039809 Gabbr2 GABABR2|Gb2|Gm425|Gpr51 - 4|4 B1 gamma-aminobutyric acid (GABA) B receptor, 2 protein-coding 102637092 Gm21872 - - Y|Y predicted gene, 21872 protein-coding 105247066 Gm42240 - - 5|5 predicted gene, 42240 ncRNA 111474 Gln3-9 - - - GLN retrotransposon family 3-9 other 97874 B430203I24Rik C79300 - - RIKEN cDNA B430203I24 gene protein-coding 20168 Mm.246990 NM_053076 ENSMUSG00000024758 Rtn3 RTN3-A1 - 19|19 A reticulon 3 protein-coding 100042848 Mm.469892 NM_001105073 ENSMUSG00000090892 Vmn2r41 - - 7|7 A1 vomeronasal 2, receptor 41 protein-coding 100416296 Gm14933 - - X|X C3 cofilin 1, non-muscle pseudogene pseudo 434885 Gm15163 EG434885 - X|X F4 succinate-Coenzyme A ligase, GDP-forming, beta subunit pseudogene pseudo 61349 D4Mit127 - - 4 80.52 cM DNA segment, Chr 4, Massachusetts Institute of Technology 127 unknown 100035420 Nashs1 - - - nonalcoholic steatohepatitis susceptibility 1 unknown 102637099 XM_006506837 Gm38495 - - 6 D1|6 predicted gene, 38495 protein-coding 216829 Mm.295306 NM_175002 ENSMUSG00000048497 Mmgt2 AI852046 - 11|11 B2 membrane magnesium transporter 2 protein-coding 99709 Mm.440040 NM_001033199 ENSMUSG00000074195 Clca4b AI747448|Clca7 - 3|3 H2 chloride channel accessory 4B protein-coding 319866 Mm.448133 D630014O11Rik - - 17|17 RIKEN cDNA D630014O11 gene ncRNA 18799 Mm.23963 NM_019676 ENSMUSG00000010660 Plcd1 AW212592|C79986 - 9|9 F3 phospholipase C, delta 1 protein-coding 102638308 XR_377025 Gm34902 - - 5 C3.3|5 predicted gene, 34902 ncRNA 100534340 LOC100534340 - - 7|7 B4 retinoblastoma binding protein 6, ubiquitin ligase pseudogene pseudo 52252 D3Ertd162e - - 3 61.39 cM DNA segment, Chr 3, ERATO Doi 162, expressed unknown 100048968 Gofm3 - - - gonadal fat mass 3 unknown 14938 Mm.15510 NM_010370 ENSMUSG00000023132 Gzma AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1 - 13 D2.2|13 63.93 cM granzyme A protein-coding 244721 Mm.86627 NM_172919 ENSMUSG00000058192 Zfp846 2210010B09Rik|9130221F13|Znf846 - 9|9 A3 zinc finger protein 846 protein-coding 100035746 Sbmd4 - - 11 54.34 cM spinal bone mineral density 4 unknown 223669 Mm.38948 NM_145916 ENSMUSG00000033669 Zfp7 KRAB20|KRAB7|Krox-2|Zfp-7|Zfp65|Zfp80|Zfp86-rs1|mszf73-2 - 15 D3|15 36.28 cM zinc finger protein 7 protein-coding 102633040 XR_386182 Gm30961 - - 18 B3|18 predicted gene, 30961 ncRNA 102639091 LOC102639091 - - X F4 mitochondrial import receptor subunit TOM5 homolog pseudo 207175 Mm.344708 NM_145825 ENSMUSG00000045031 Cetn4 - - 3|3 B centrin 4 protein-coding 114254 Many4 QTL-CS15.1 - - mandible asymmetry 4 unknown 73871 XR_383257 4930428N03Rik 4930525N24Rik - 14|14 A3 RIKEN cDNA 4930428N03 gene ncRNA 100034815 Lgth6 - - 11 51.23 cM body length 6 unknown 72080 Mm.250293 NM_001081085 ENSMUSG00000026955 Sapcd2 2010317E24Rik|6030458L21Rik|AL033337|ang - 2|2 A3 suppressor APC domain containing 2 protein-coding 105244010 Mm.417758 NR_151535 Gm37065 - - 1 H3|1 predicted gene, 37065 ncRNA 780886 Ighv1-27 - - 12|12 F2 immunoglobulin heavy variable V1-27 pseudo 21327 T(X;7)6Rl T6Rl - - reciprocal translocation, Chr X and 7, Russell 6 other 110552 Fdpsl8 - - - farnesyl diphosphate synthetase-like 8 protein-coding 100040744 Mm.464831 NM_001160140 Gm21394 - - Y|Y predicted gene, 21394 unknown 100862297 Gm21627 - - Y|Y predicted gene, 21627 protein-coding 105242714 Gm38857 - - 6|6 predicted gene, 38857 protein-coding 100417019 Gm20948 - - 8|8 A4 MAD homolog 2 pseudogene pseudo 330096 Mm.442747 NM_001033415 ENSMUSG00000050010 Shisa3 D830007B15Rik - 5|5 C3.1 shisa family member 3 protein-coding 434350 Mm.442061 NR_040363 9430091E24Rik - - 8|8 E1 RIKEN cDNA 9430091E24 gene ncRNA 56559 D6Ott22 - - - DNA segment, Chr 6, Animal Research Centre, Ottawa 22 unknown 23850 Mm.458621 NM_001085376 ENSMUSG00000073530 Pappa2 PAPP-A2|PLAC3|Pappe - 1|1 H1 pappalysin 2 protein-coding 102465780 NR_106143 ENSMUSG00000098489 Mir7678 Gm27388|mmu-mir-7678 - 2|2 H3 microRNA 7678 ncRNA 102640646 XR_001784565 Gm36661 - - 4 C6|4 predicted gene, 36661 ncRNA 407823 Mm.228071 NM_001001182 ENSMUSG00000026987 Baz2b 5830435C13Rik|BC053917|D2Ertd794e - 2 C1.1|2 34.18 cM bromodomain adjacent to zinc finger domain, 2B protein-coding 102637325 Gm34165 - - 13 A3.1|13 predicted gene, 34165 pseudo 105245843 XR_874905 Gm41232 - - 14 E2.3|14 predicted gene, 41232 ncRNA 100418185 Gm19062 - - 18|18 E3 eukaryotic translation initiation factor 4, gamma 2 pseudogene pseudo 107295 AU022855 - - - expressed sequence AU022855 protein-coding 234371 Mm.23488 NM_145597 ENSMUSG00000002342 Tmem161a AI428876|BB161850|BC021367 - 8|8 B3.3 transmembrane protein 161A protein-coding 433597 Mm.297801 NM_001101531 ENSMUSG00000090527 Gm5538 - - 3 D|3 predicted gene 5538 protein-coding 664920 Gm11952 - - 11|11 A1 nucleolar protein 8 pseudogene pseudo 71029 Mm.399496 NR_045504 ENSMUSG00000102004 4933402C06Rik - - 7|7 B3 RIKEN cDNA 4933402C06 gene ncRNA 105245421 Gm40879 - - 12 A1.2|12 predicted gene, 40879 pseudo 17611 Ms30 MMS30 - - minisatellites detected by probe MMS30 other 666904 Gm8355 EG666904 - 10 A2|10 heat shock protein 8 pseudogene pseudo 102636552 XR_378725 Gm33587 - - 8 A1.1|8 predicted gene, 33587 ncRNA 105244828 XM_017321858 Gm40364 - - 6 B2.3|6 predicted gene, 40364 protein-coding 70859 Mm.320289 NM_027581 ENSMUSG00000021997 Lrrc63 4921509B22Rik - 14 D3|14 leucine rich repeat containing 63 protein-coding 69206 Mm.14816 NM_001033146 ENSMUSG00000091575 2010016I18Rik - - 3|3 F2.3 RIKEN cDNA 2010016I18 gene ncRNA 11704 Mm.391342 NM_009666 ENSMUSG00000031354 Amelx ALGN|AMGL|AMGX|Amel|Amg|LRAP|Rgsc888 - X F5|X 78.95 cM amelogenin, X-linked protein-coding 620807 Mm.464562 NM_001081285 ENSMUSG00000078689 Mup6 Gm12544|Mup2 - 4 B3|4 major urinary protein 6 protein-coding 622727 Rpl7a-ps10 EG622727|Gm6347 - 9|9 E3.3 ribosomal protein L7A, pseudogene 10 pseudo 102467570 n-TKctt24 n-Tk24 - 7 B1|7 nuclear encoded tRNA lysine 24 (anticodon TTT) tRNA 244562 Mm.67485 NM_172912 ENSMUSG00000036872 Abcc12 4930467B22Rik|MRP9 - 8 C3|8 42.06 cM ATP-binding cassette, sub-family C (CFTR/MRP), member 12 protein-coding 100830 AU022526 - - - expressed sequence AU022526 unknown 105245808 XR_874787 Gm41198 - - 14 D2|14 predicted gene, 41198 ncRNA 110120434 LOC110120434 - - - VISTA enhancer mm1447 biological-region 329628 Mm.316210 NM_183221 ENSMUSG00000046743 Fat4 6030410K14Rik|9430004M15 - 3|3 B FAT atypical cadherin 4 protein-coding 242362 Mm.245602 NM_172865 ENSMUSG00000040520 Manea 4932703L02Rik - 4|4 A3 mannosidase, endo-alpha protein-coding 328780 Mm.127166 NM_178372 ENSMUSG00000056399 Prss34 C130091P12|Mcp11|mMcp-11 - 17 A3.3|17 12.53 cM protease, serine 34 protein-coding 70312 Mm.87628 NM_027381 ENSMUSG00000034889 Cactin 2510012J08Rik - 10|10 C1 cactin, spliceosome C complex subunit protein-coding 102640665 Gm36679 - - 5|5 predicted gene, 36679 ncRNA 117148 Mm.356184 NM_054095 ENSMUSG00000031837 Necab2 Efcbp2 - 8|8 E1 N-terminal EF-hand calcium binding protein 2 protein-coding 100504169 Mm.417731 NR_045095 Gm20098 - - 17 C|17 27.07 cM predicted gene, 20098 ncRNA 100417212 Gm18454 - - 7|7 D3 splicing factor 3a, subunit 1 pseudogene pseudo 258997 Mm.377783 NM_146995 ENSMUSG00000048810 Olfr202 MOR182-1 - 16|16 C1.3 olfactory receptor 202 protein-coding 14559 Mm.258280 NM_008107 ENSMUSG00000087408 Gdf1 AI385651|Gdf-1 - 8|8 B3.3 growth differentiation factor 1 protein-coding 320698 C530042K13Rik - - 1|1 RIKEN cDNA C530042K13 gene protein-coding 105243739 XR_878291 Gm39547 - - X F4|X predicted gene, 39547 ncRNA 108167663 XR_001779223 Gm46119 - - 9 D|9 predicted gene, 46119 ncRNA 640461 Gm14016 - - 2|2 E5 eukaryotic translation initiation factor 5A pseudogene pseudo 666144 Gm12749 - - 4|4 C7 basic leucine zipper and W2 domains 1 pseudogene pseudo 15366 Mm.116997 NM_013552 ENSMUSG00000020330 Hmmr AA386826|CD168|Rhamm - 11 A5|11 24.4 cM hyaluronan mediated motility receptor (RHAMM) protein-coding 102635000 Gm28194 - - Y|Y predicted gene 28194 protein-coding 258460 Mm.377514 NM_146468 ENSMUSG00000101874 Olfr1391 MOR256-27 - 11|11 B1.2 olfactory receptor 1391 protein-coding 112251 Orch5 - - - autoimmune orchitis resistance 5 unknown 100503048 LOC100503048 - - 9 A2 olfactory receptor 7G2-like pseudo 20630 Mm.103949 NM_011432 ENSMUSG00000024217 Snrpc Snrp1c|U1-C|U1C - 17|17 A3.3 U1 small nuclear ribonucleoprotein C protein-coding 668224 Mm.357766 NR_045872 Gm9054 EG668224 - 3|3 F2.1 predicted gene 9054 ncRNA 105243645 XR_001780398 Gm39485 - - 11 E2|11 predicted gene, 39485 ncRNA 27523 B520L19T - - - DNA segment, B520L19T unknown 100418097 Gm18997 - - 9|9 A2 NSA2 ribosome biogenesis homolog pseudogene pseudo 105243403 XR_870724 Gm39335 - - 9 A5.3|9 predicted gene, 39335 ncRNA 67011 Mm.291731 NM_025907 ENSMUSG00000021891 Mettl6 1600013P15Rik|AI467521|AU020711 - 14|14 B methyltransferase like 6 protein-coding 102633796 XR_390838 Gm31536 - - 4 D3|4 predicted gene, 31536 ncRNA 100417746 Gm18801 - - 1|1 E2.1 zinc finger protein of the cerebellum 5 pseudogene pseudo 102467480 n-TDgtc2 n-Td2 - 2 E4|2 nuclear encoded tRNA aspartic acid 2 (anticodon GTC) tRNA 225215 Mm.379366 NM_198609 ENSMUSG00000032215 Rsl24d1 2410159K22Rik - 9|9 D ribosomal L24 domain containing 1 protein-coding 77700 Mm.323226 XR_105147 9130208D14Rik - - 7|7 E3 RIKEN cDNA 9130208D14 gene unknown 12281 cab - - - cardiac abnormality unknown 77741 Mm.159984 NR_040492 ENSMUSG00000097934 6720483E21Rik - - 1|1 A4 RIKEN cDNA 6720483E21 gene ncRNA 105244760 Gm40313 - - 5|5 predicted gene, 40313 ncRNA 21840 ti - - - tipsy unknown 117074 Actre1 actre1q - 1 81.08 cM activity response to ethanol 1 unknown 102642216 Mm.196464 LOC102642216 - - - uncharacterized LOC102642216 ncRNA 62007 D7Mit344 - - 7 18.36 cM DNA segment, Chr 7, Massachusetts Institute of Technology 344 unknown 102632822 XR_375242 Gm30796 - - 2 H3|2 predicted gene, 30796 ncRNA 665773 Gm7781 EG665773 - X|X E3 predicted gene 7781 pseudo 102640137 Gm36276 - - 16|16 predicted gene, 36276 ncRNA 100418465 Gm4728 100043947 - X|X A1.1 predicted gene 4728 pseudo 100502934 Gm13842 - - 5|5 56.1 cM predicted gene 13842 ncRNA 245877 Mm.266716 NM_144941 ENSMUSG00000028849 Map7d1 AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187 - 4|4 D2.2 MAP7 domain containing 1 protein-coding 102633257 XR_376510 Gm31125 - - 4 C7|4 predicted gene, 31125 ncRNA 108168224 Gm46503 - - 15 F1|15 40S ribosomal protein S13 pseudogene pseudo 244329 Mm.235296 NM_173189 ENSMUSG00000039842 Mcph1 5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge - 8|8 A1.3 microcephaly, primary autosomal recessive 1 protein-coding 53381 Mm.247542 NM_016764 ENSMUSG00000025289 Prdx4 AOE372|Prx-iv|Prx4|TRANK - X F3|X 72.38 cM peroxiredoxin 4 protein-coding 102636333 XR_384064 Gm33431 - - 15 B3.1|15 predicted gene, 33431 ncRNA 110579 Tcra-V11.6 - - - T cell receptor alpha, variable 11.6 other 13417 Mm.426017 NM_013811 ENSMUSG00000033826 Dnah8 ATPase|Dnahc8|Hst6.7b|P1-Loop - 17|17 A3.3 dynein, axonemal, heavy chain 8 protein-coding 62885 D11Mit226 - - 11 5.64 cM DNA segment, Chr 11, Massachusetts Institute of Technology 226 unknown 667767 Gm8802 EG667767 - 5|5 A1 lin-37 homolog pseudogene pseudo 434439 Mm.78372 NM_001004192 ENSMUSG00000050641 BC048562 - - 9|9 F2 cDNA sequence BC048562 protein-coding 70285 Mm.28128 NM_027332 ENSMUSG00000028187 Rpf1 2210420E24Rik|2310066N05Rik|Bxdc5 - 3|3 H2 ribosome production factor 1 homolog protein-coding 218454 Mm.316553 NM_172589 ENSMUSG00000045312 Lhfpl2 6030465B15|AI447312|AW050335|mKIAA0206|vgim - 13|13 C3 lipoma HMGIC fusion partner-like 2 protein-coding 102633624 XR_379214 ENSMUSG00000111853 Gm31408 - - 9 A4|9 predicted gene, 31408 ncRNA 210105 Mm.234422 NM_172482 ENSMUSG00000030469 Zfp719 8030458J18|9430094P17Rik|C630016O21Rik|mszf6 - 7|7 B3 zinc finger protein 719 protein-coding 108168731 XR_001783217 LOC108168731 - - 2 G3 uncharacterized LOC108168731 pseudo 109990 Saac - - - sialic acid O-acetylation protein-coding 208846 Mm.87417 NM_026102 ENSMUSG00000034574 Daam1 - - 12|12 C3 dishevelled associated activator of morphogenesis 1 protein-coding 114584 Mm.29524 NM_033444 ENSMUSG00000007041 Clic1 Clcp|G6 - 17 B1|17 18.58 cM chloride intracellular channel 1 protein-coding 630331 LOC630331 - - 12|12 Ig heavy chain V-I region V35-like other 105243661 XR_878057 Gm39496 - - X A1.1|X predicted gene, 39496 ncRNA 102632429 XR_378924 Gm30504 Gm45373 - 8 B1.1|8 predicted gene, 30504 ncRNA 16673 Mm.306829 NM_008472 ENSMUSG00000020916 Krt36 HRa-1|K36|Krt1-22|Krt1-5|MHRa-1 - 11|11 D keratin 36 protein-coding 68375 Mm.19834 NM_026703 ENSMUSG00000026895 Ndufa8 0610033L03Rik|AW261656 - 2|2 B NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8 protein-coding 11772 Mm.253090 NM_007459 ENSMUSG00000002957 Ap2a2 2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25 - 7|7 F5 adaptor-related protein complex 2, alpha 2 subunit protein-coding 30960 Mm.266767 NM_013933 ENSMUSG00000024091 Vapa 33kDa|VAP33 - 17|17 E1.1 vesicle-associated membrane protein, associated protein A protein-coding 108169057 XR_001784903 Gm46917 - - 5 E4|5 predicted gene, 46917 ncRNA 15147 Hc16 Cen16 - - heterochromatin, Chr 16 other 226245 Mm.156742 NM_172641 ENSMUSG00000035818 Plekhs1 9930023K05Rik - 19|19 D2 pleckstrin homology domain containing, family S member 1 protein-coding 100417704 Gm18773 - - X|X F3 predicted gene, 18773 pseudo 62265 D18Mit94 - - 18 19.97 cM DNA segment, Chr 18, Massachusetts Institute of Technology 94 unknown 20899 Mm.5171 NM_009292 ENSMUSG00000029848 Stra8 - - 6|6 B1 stimulated by retinoic acid gene 8 protein-coding 12154 Mm.483321 NM_009756 ENSMUSG00000030046 Bmp10 b2b2711Clo - 6|6 D1 bone morphogenetic protein 10 protein-coding 77362 Mm.118274 XR_001783623 9430093N23Rik - - 2|2 H3 RIKEN cDNA 9430093N23 gene ncRNA 105594 Mm.441404 NM_175342 ENSMUSG00000095975 Cphx1 AU019881|AU023336|C330003B14Rik|C80129|Cphx|Eso-1 - 14|14 A3 cytoplasmic polyadenylated homeobox 1 protein-coding 382062 Mm.325205 NM_206536 ENSMUSG00000057191 AB124611 Gm1706 - 9|9 A3 cDNA sequence AB124611 protein-coding 258642 NM_146648 Olfr1165-ps MOR174-7|Olfr1165 - 2|2 D olfactory receptor 1165, pseudogene pseudo 20203 Mm.235998 NM_009115 ENSMUSG00000033208 S100b AI850290|Bpb - 10 C1|10 38.76 cM S100 protein, beta polypeptide, neural protein-coding 229937 Mm.24586 NM_001081094 ENSMUSG00000074182 Znhit6 2410019A14Rik - 3|3 H2 zinc finger, HIT type 6 protein-coding 105247214 XR_881582 Gm42352 - - 4 E2|4 predicted gene, 42352 ncRNA 72259 Mm.396206 NR_045903 ENSMUSG00000097424 1700030M09Rik - - 8|8 E1 RIKEN cDNA 1700030M09 gene ncRNA 329828 Mm.27054 NM_001085515 ENSMUSG00000046312 AI464131 AA408153|AI604836|Gm762|Kiaa1161|Myorg|NET37 - 4|4 A5 expressed sequence AI464131 protein-coding 60979 D16Mit7 - - 16 48.96 cM DNA segment, Chr 16, Massachusetts Institute of Technology 7 unknown 100035456 Vmmt6 - - - vertebral morphology and mechanical traits 6 unknown 71370 5430433H01Rik - - 3|3 RIKEN cDNA 5430433H01 gene protein-coding 319765 Mm.489442 NM_183029 ENSMUSG00000033581 Igf2bp2 C330012H03Rik|IMP-2|Imp2|Neilsen - 16|16 B1 insulin-like growth factor 2 mRNA binding protein 2 protein-coding 105246588 XR_877899 Gm41858 - - 19 C3|19 predicted gene, 41858 ncRNA 260401 Eae26 - - 7 61.37 cM experimental allergic encephalomyelitis susceptibility 26 unknown 21930 Mm.3509 NM_009398 ENSMUSG00000053475 Tnfaip6 TSG-6|Tnfip6|Tsg6 - 2|2 C1.1 tumor necrosis factor alpha induced protein 6 protein-coding 665926 Gm7848 EG665926 - 7|7 A1 predicted gene 7848 pseudo 108168559 XM_017318762 ENSMUSG00000094399 LOC108168559 - - Y E X-linked lymphocyte-regulated protein PM1-like protein-coding 105243008 XR_869833 Gm39057 - - 7 E2|7 predicted gene, 39057 ncRNA 60919 D9Mit24 - - 9 55.07 cM DNA segment, Chr 9, Massachusetts Institute of Technology 24 unknown 100534271 Gm21009 - - 5|5 A3 lamin B2 pseudogene pseudo 268709 Mm.256058 NM_183187 ENSMUSG00000021750 Fam107a DRR1 - 14|14 A1 family with sequence similarity 107, member A protein-coding 378778 L1Md-A5 L1Md-A3.6 - - L1 repeat, A subfamily, member 5 other 13706 Mm.45316 NM_007919 ENSMUSG00000058579 Cela2a Ela-2|Ela2|Ela2a - 4 E1|4 74.75 cM chymotrypsin-like elastase family, member 2A protein-coding 100035950 Mancq1 Man-1 - - myeloperoxidase-specific anti-neutrophil cytoplasmic autoantibody QTL 1 unknown 108167400 LOC108167400 - - - Ig heavy chain V region 345-like other 116754 Cocrb8 - - 9 28.62 cM cocaine related behavior 8 unknown 14800 Mm.220224 NM_013540 ENSMUSG00000033981 Gria2 GluA2|GluR-B|Glur-2|Glur2|gluR-K2 - 3 E3|3 35.5 cM glutamate receptor, ionotropic, AMPA2 (alpha 2) protein-coding 100043946 Mm.211985 NR_045321 ENSMUSG00000087591 Gm14635 - - X|X A1.1 predicted gene 14635 ncRNA 14028 Mm.389754 NM_007966 ENSMUSG00000005503 Evx1 Evx-1 - 6|6 B3 even-skipped homeobox 1 protein-coding 102640361 XR_381347 Gm36441 - - 12 A1.3|12 predicted gene, 36441 ncRNA 69632 Mm.275266 NM_027144 ENSMUSG00000059495 Arhgef12 2310014B11Rik|AU019857|Larg|mKIAA0382 - 9|9 A5.1 Rho guanine nucleotide exchange factor (GEF) 12 protein-coding 105246527 Gm41802 - - 19|19 predicted gene, 41802 ncRNA 70615 Mm.304382 NM_027480 ENSMUSG00000054708 Ankrd24 4631433D01Rik|5730519E19Rik|D10Bur2e - 10 C1|10 39.72 cM ankyrin repeat domain 24 protein-coding 100036318 Artmd2 Amd2 - 3 27.73 cM arthropathy in MRL and DBA/1 mice 2 unknown 670593 XM_001475988 ENSMUSG00000107280 Gm9495 - - 8 B3.3|8 predicted gene 9495 protein-coding 243374 Mm.86514 NM_212486 ENSMUSG00000064262 Gimap8 Gm457|IAN9|IMAP8 - 6|6 B2.3 GTPase, IMAP family member 8 protein-coding 61677 D6Mit289 - - 6 63.1 cM DNA segment, Chr 6, Massachusetts Institute of Technology 289 unknown 27631 D17Leh525 - - 17 19.16 cM DNA segment, Chr 17, Lehrach 525 unknown 19449 Rb(1.3)1Ei Rb1Ei - - Robertsonian translocation, Chr 1 and 3, Eicher 1 other 237868 Mm.210332 NM_172795 ENSMUSG00000050132 Sarm1 A830091I15Rik|C78606|MyD885|Sarm - 11 B5|11 46.74 cM sterile alpha and HEAT/Armadillo motif containing 1 protein-coding 110527 Prdx1-rs5 - - - peroxiredoxin 1, related sequence 5 protein-coding 112322 Tir3a - - 1 50.84 cM trypanosome infection response 3a unknown 100040786 Mm.350930 NM_001160129 ENSMUSG00000096666 Gm20852 - - Y|Y C3 predicted gene, 20852 protein-coding 102632866 Gm30828 - - 7|7 predicted gene, 30828 ncRNA 102637870 XR_386141 Gm34572 - - 18 B1|18 predicted gene, 34572 ncRNA 106780807 Obox4-ps1 Gm27171 - 7 A1|7 oocyte specific homeobox 4, pseudogene 1 pseudo 171530 Mm.388865 NM_145077 ENSMUSG00000049699 Ucn2 Ucn II|Ucn-2|ucn-II - 9|9 F2 urocortin 2 protein-coding 100503050 Rapgef3os2 Gm16256 - 15|15 53.76 cM Rap guanine nucleotide exchange factor (GEF) 3, opposite strand 2 ncRNA 670940 Mm.469908 NM_001105183 ENSMUSG00000090806 Vmn2r70 EG620835 - 7|7 D3 vomeronasal 2, receptor 70 protein-coding 102467437 n-TPtgg7 n-Tp17 - 3 C|3 nuclear encoded tRNA proline 7 (anticodon TGG) tRNA 433961 XM_485697 ENSMUSG00000104752 Gm5565 - - 5 G3|5 predicted gene 5565 protein-coding 100035142 Lith20 - - 9 39.85 cM lithogenic gene 20 unknown 100043187 Gm4284 - - 2|2 E3 PRELI domain containing 1 pseudogene pseudo 668958 Mm.443264 NM_001085551 ENSMUSG00000094558 Btbd35f11 Gm14346 - X|X A1.1 BTB domain containing 35, family member 11 protein-coding 21303 T(X;4)1Rl T1Rl - - reciprocal translocation, Chr X and 4, Russell 1 other 320549 Mm.348793 NM_177187 ENSMUSG00000070677 D5Ertd577e E330023J07Rik - 5 E3|5 47.29 cM DNA segment, Chr 5, ERATO Doi 577, expressed protein-coding 492986 Kidq6 - - - kidney weight QTL 6 unknown 15448 hph2 hph-2 - - hyperphenylalaninemia 2 unknown 399591 Mm.381904 NM_207267 ENSMUSG00000072955 Tmsb15l 4930488E11Rik|Tb15r|Tmsb15b1-Tmsb15b2|Tmsb15r - X|X F1 thymosin beta 15b like protein-coding 666505 Gm16490 - - 18|18 B2 predicted gene 16490 protein-coding 105246936 Gm42130 - - 5|5 predicted gene, 42130 ncRNA 116887 Pgia12 - - 19 56.28 cM proteoglycan induced arthritis 12 unknown 382059 Mm.42715 NM_207658 ENSMUSG00000074443 Defa22 Defcr22 - 8|8 A2 defensin, alpha, 22 protein-coding 105243387 XR_870684 Gm39322 - - 9 A5.1|9 predicted gene, 39322 ncRNA 258873 Mm.223288 NM_146873 ENSMUSG00000062621 Olfr911-ps1 MOR165-1|MOR166-1|Olfr909 - 9|9 A5.1 olfactory receptor 911, pseudogene 1 protein-coding 75599 Mm.36560 NM_029357 ENSMUSG00000051375 Pcdh1 2010005A06Rik|AI585920 - 18 B3|18 20.08 cM protocadherin 1 protein-coding 52292 D5Ertd470e - - 5 64.0 cM DNA segment, Chr 5, ERATO Doi 470, expressed unknown 208890 Mm.483839 NM_145947 ENSMUSG00000040569 Slc26a7 - - 4|4 A1 solute carrier family 26, member 7 protein-coding 383542 Gm5259 EG383542 - 1|1 D ribosomal protein L7A pseudogene pseudo 100417260 Gm18487 - - 9|9 E2 crumbs homolog 1 pseudogene pseudo 21028 T(1;9)27H T27H - - reciprocal translocation, Chr 1 and 9, Harwell 27 other 668857 Gm9402 EG668857 - 3|3 G3 predicted gene 9402 pseudo 100036340 Bw23 Bmq1 - - body weight QTL 23 unknown 100416287 Gm11475 - - 2|2 H3 ribosomal protein L18 pseudogene pseudo 433181 Mm.117440 NM_001048217 ENSMUSG00000073573 Spink11 9230112K01Rik - 18|18 B3 serine peptidase inhibitor, Kazal type 11 protein-coding 100043866 Gm12760 - - 7|7 B1 predicted gene 12760 pseudo 107693 Hfm - - - hemifacial microsomia-associated locus protein-coding 60856 D6Mit14 - - 6 77.64 cM DNA segment, Chr 6, Massachusetts Institute of Technology 14 unknown 626563 Gm14035 - - 2|2 C1.1 predicted gene 14035 pseudo 108168578 XM_017318782 ENSMUSG00000095324 LOC108168578 - - Y A1 Y-linked testis-specific protein 1-like protein-coding 723992 Gm9728 - - 6|6 C1 tubulin, alpha 1A pseudogene pseudo 105243929 Mm.475145 Gm39644 - - 1|1 predicted gene, 39644 ncRNA 105246337 XR_877040 Gm41638 - - 17 E4|17 predicted gene, 41638 ncRNA 27468 45S - - - DNA segment, 45S unknown 631797 XM_006521609 ENSMUSG00000037106 Fer1l6 EG631797 - 15|15 D1 fer-1-like 6 (C. elegans) protein-coding 492937 Hycdc - - 5 52.23 cM hypercapnic duty cycle unknown 99219 Mm.151168 AU022840 - - - expressed sequence AU022840 protein-coding 18419 Mm.8020 NM_013624 ENSMUSG00000009487 Otog 4932420K09|Otgn|twt - 7 B3|7 29.66 cM otogelin protein-coding 399568 Mm.134929 NM_207264 ENSMUSG00000040282 BC052040 - - 2|2 E4 cDNA sequence BC052040 protein-coding 104993 Mm.157069 AW060763 - - - expressed sequence AW060763 protein-coding 100628607 NR_039542 ENSMUSG00000092639 Mir3964 mmu-mir-3964|mu-mir-3964 - 15 B1|15 11.97 cM microRNA 3964 ncRNA 102638403 XR_375186 Gm34980 - - 2 H2|2 predicted gene, 34980 ncRNA 105246470 XR_877487 Gm41755 - - 18 E1|18 predicted gene, 41755 ncRNA 104127 Lith2 - - 19|19 44.88 cM lithogenic gene 2 unknown 22130 Mm.252195 NM_009442 ENSMUSG00000026803 Ttf1 AV245725|TTF-1|TTF-I - 2|2 A3 transcription termination factor, RNA polymerase I protein-coding 105242646 XR_869050 Gm38802 - - 6 B2.3|6 predicted gene, 38802 ncRNA 102636756 Gm16177 - - 8|8 42.1 cM predicted gene 16177 pseudo 100416233 Gm17988 - - 7|7 D1 ribosomal protein S7 pseudogene pseudo 102635880 Mm.331974 NR_152784 ENSMUSG00000110902 Gm33104 - - 10 A3|10 predicted gene, 33104 ncRNA 74848 4833446E11Rik - - 7|7 RIKEN cDNA 4833446E11 gene protein-coding 668700 Gm9308 EG668700 - 14|14 E5 predicted gene 9308 pseudo 17752 Mm.1536 NM_008631 ENSMUSG00000031757 Mt4 MT-IV - 8 C5|8 46.26 cM metallothionein 4 protein-coding 102637743 LOC102637743 - - 16 A3 biorientation of chromosomes in cell division protein 1 pseudogene pseudo 258070 Olfr863-ps1 MOR146-5P - 9|9 A3 olfactory receptor 863, pseudogene 1 pseudo 62605 D13Mit140 - - 13 27.68 cM DNA segment, Chr 13, Massachusetts Institute of Technology 140 unknown 61139 D9Mit330 - - 9 25.7 cM DNA Segment, Chr 9 Massachusetts Institute of Technology 330 unknown 102636808 XR_380273 Gm38491 - - 10 B2|10 predicted gene, 38491 ncRNA 52583 D15Ertd320e - - - DNA segment, Chr 15, ERATO Doi 320, expressed unknown 626061 NR_030739 Gm6649 AI467242 - 3 G1|3 E74-like factor 1 pseudogene pseudo 19059 Mm.46125 NM_001004025 ENSMUSG00000028310 Ppp3r2 CaNB2|CnB2 - 4|4 B1 protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II) protein-coding 621976 Mm.259830 NM_001163572 ENSMUSG00000087370 Tmem170b EG621976 - 13|13 A4 transmembrane protein 170B protein-coding 100035791 Vtbt5 - - - vertebral trabecular bone trait 5 unknown 12032 Mm.4598 NM_007529 ENSMUSG00000004892 Bcan Cspg7 - 3 F1|3 38.78 cM brevican protein-coding 100042242 Gm3745 - - 3|3 F1 predicted gene 3745 pseudo 387140 NR_029738 ENSMUSG00000065455 Mir21a Mir21|Mirn21|mmu-mir-21|mmu-mir-21a - 11|11 C microRNA 21a ncRNA 72160 Mm.281287 NM_028135 ENSMUSG00000026347 Tmem163 2610024A01Rik|A-cre|Act-Cre|SV31|Tg(ACTB-cre)2Mrt|actin-cre|cre - 1|1 E3 transmembrane protein 163 protein-coding 76747 Mm.275769 NM_029723 ENSMUSG00000026989 Dapl1 2310032F03Rik|EEDA - 2|2 C1.1 death associated protein-like 1 protein-coding 624168 Gm12241 - - 11|11 B1.3 zinc finger protein of the cerebellum 5 pseudogene pseudo 100040090 Gm2594 - - 9|9 A2 predicted gene 2594 pseudo 100043541 Mm.326729 B630019A10Rik - - 16|16 B1 RIKEN cDNA B630019A10 gene unknown 105246874 XR_879911 Gm42080 - - 11 B2|11 predicted gene, 42080 ncRNA 17952 Mm.218759 NM_010871 ENSMUSG00000078942 Naip6 Birc1f|Naip-rs4|Naip-rs4A - 13 D1|13 53.09 cM NLR family, apoptosis inhibitory protein 6 protein-coding 100035001 Estoq2 Estq2 - - embryo survival total QTL 2 unknown 102634686 XR_381219 Gm32214 - - 12 A1.1|12 predicted gene, 32214 ncRNA 78557 9530071P10Rik - - 5|5 RIKEN cDNA 9530071P10 gene protein-coding 20216 Mm.334199 NM_016870 ENSMUSG00000030935 Acsm3 Sa|Sah - 7|7 F2 acyl-CoA synthetase medium-chain family member 3 protein-coding 102639235 XR_387265 Gm35591 - - 1 D|1 predicted gene, 35591 ncRNA 227210 Mm.39706 NM_001097644 ENSMUSG00000070871 Ccnyl1 9630037P07Rik|AW554339 - 1|1 C2 cyclin Y-like 1 protein-coding 17308 Mm.196933 NM_010794 ENSMUSG00000020346 Mgat1 Mgat-1 - 11 B1.2|11 29.27 cM mannoside acetylglucosaminyltransferase 1 protein-coding 433270 Mm.386795 E330040D14Rik EG433270 - 1|1 A2 RIKEN cDNA E330040D14 gene protein-coding 100035493 Gf5 - - - gonadal fat pad weight 5 unknown 100827 AU022322 - - - expressed sequence AU022322 unknown 55950 Mm.38011 NM_018772 ENSMUSG00000047843 Bri3 I3 - 5|5 G2 brain protein I3 protein-coding 100038587 Mm.447278 Gm10278 - - - predicted gene 10278 unknown 102641008 LOC102641008 - - - ADP-ribosylation factor-like protein 4A pseudo 102635019 Gm32460 - - 1 H6|1 predicted gene, 32460 pseudo 791270 Mm.127093 Gm10115 - - - predicted gene 10115 unknown 60530 Mm.236114 NM_021891 ENSMUSG00000035455 Fignl1 - - 11|11 A1 fidgetin-like 1 protein-coding 110650 Mdm3 Mdm-3 - - transformed mouse 3T3 cell double minute 3 protein-coding 19273 Mm.4860 NM_011214 ENSMUSG00000028909 Ptpru Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda - 4 D2.3|4 64.5 cM protein tyrosine phosphatase, receptor type, U protein-coding 16236 In(11)20Rk In20Rk - - inversion, Chr 11, Roderick 20 other 75589 Mm.86666 NR_037994 ENSMUSG00000101746 2310043L19Rik - - 1|1 H4 RIKEN cDNA 2310043L19 gene ncRNA 240066 Mm.26636 NM_207245 ENSMUSG00000095325 Zfp870 AI173952 - 17|17 B1 zinc finger protein 870 protein-coding 62999 D10Mit304 - - 10 66.47 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 304 unknown 105247221 XR_881600 Gm42356 - - 4 E2|4 predicted gene, 42356 ncRNA 404566 Mm.445093 AL024446 - - - expressed sequence AL024446 unknown 100042941 Gm4118 - - 14 D1|14 proteasome (prosome, macropain) subunit, alpha type 2 pseudogene pseudo 102632776 XR_374209 Gm30761 - - 2 B|2 predicted gene, 30761 ncRNA 85121 D3Mit133 - - 3 20.3 cM DNA segment, Chr 3, Massachusetts Institute of Technology 133 unknown 224826 Mm.28234 NM_146078 ENSMUSG00000023977 Ubr2 9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349 - 17|17 C ubiquitin protein ligase E3 component n-recognin 2 protein-coding 53609 Mm.20913 NM_016680 ENSMUSG00000061028 Clasrp Clasp|Sfrs16|Srsf16|Swap2 - 7|7 A3 CLK4-associating serine/arginine rich protein protein-coding 258600 Mm.377586 NM_146607 ENSMUSG00000070983 Olfr270 MOR262-9 - 4|4 B2 olfactory receptor 270 protein-coding 105246831 Gm42055 - - 8|8 predicted gene, 42055 ncRNA 320770 Mm.491217 NR_030699 ENSMUSG00000101013 A630072M18Rik Aptr - 5|5 A3 RIKEN cDNA A630072M18 gene ncRNA 16282 In(4)1Dn-p In(4)1Dn|In1Dn - - inversion, Chr 4, Davisson 1, proximal other 16512 Mm.374793 NM_010601 ENSMUSG00000037579 Kcnh3 AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2 - 15|15 F1 potassium voltage-gated channel, subfamily H (eag-related), member 3 protein-coding 102633375 XR_391990 ENSMUSG00000100508 Gm28617 - - Y B|Y predicted gene 28617 ncRNA 194388 Mm.211030 NM_183138 ENSMUSG00000034832 Tet3 B430006D22Rik|BC037432|D230004J03Rik - 6|6 C3 tet methylcytosine dioxygenase 3 protein-coding 100862083 Gm21462 - - Y|Y predicted gene, 21462 protein-coding 665189 Gm7536 EG665189 - 3|3 A3 ribosomal protein L27A pseudogene pseudo 101055766 XR_001782918 Gm21861 - - Y C2|Y predicted gene, 21861 ncRNA 71286 4933439J24Rik - - 5|5 RIKEN cDNA 4933439J24 gene protein-coding 623924 Gm6462 EG623924 - 1|1 A5 predicted gene 6462 pseudo 117068 D11Lgp3e - - - DNA segment, Chr 11, Lothar Hennighausen 3, expressed unknown 78171 Mm.243834 XR_881936 4930479H17Rik Gm44599 - 7|7 B1 RIKEN cDNA 4930479H17 gene ncRNA 100416931 Gm18326 - - 6|6 G1 predicted gene, 18326 pseudo 100035043 Pnhdlc5 - - - plasma non-HDL cholesterol 5 unknown 108168340 XR_001782185 Gm46596 - - 17 E1.3|17 predicted gene, 46596 ncRNA 15890 Iapy-1 IAPE-Y - - intracisternal A particles, MuRVY linked other 171233 Mm.222636 NM_134199 ENSMUSG00000050102 Vmn1r235 V1rf2 - 17|17 A3.2 vomeronasal 1 receptor 235 protein-coding 107590 If3 If-3 - - Sendai virus induced interferon 3 protein-coding 100416358 Gm18068 - - 17|17 E2 predicted gene, 18068 pseudo 111762 Iapls2-5 - - - intracisternal A particle, lymphocyte specific 2-5 other 384038 Gm12727 Map1lc3 - 4|4 C7 microtubule-associated protein 1 light chain 3 copy 4 pseudo 109884 Lyb4 Lyb-4 - - B-lymphocyte antigen 4 protein-coding 102637498 XR_390582 Gm34290 - - 4 B3|4 predicted gene, 34290 ncRNA 108167500 Gm44705 - - 7 D2|7 eukaryotic translation initiation factor 1 pseudogene pseudo 102632960 Gm30902 - - 3|3 predicted gene, 30902 ncRNA 101920 BB155753 - - - expressed sequence BB155753 unknown 102639193 XR_376591 ENSMUSG00000085203 Gm12927 - - 4 D2.1|4 55.34 cM predicted gene 12927 ncRNA 93876 Mm.196698 NM_053130 ENSMUSG00000063687 Pcdhb5 Pcdhb4A|PcdhbE - 18|18 B3 protocadherin beta 5 protein-coding 258229 Olfr548-ps1 MOR31-13 - 7|7 E3 olfactory receptor 548, pseudogene 1 pseudo 13316 Del(5)73H Del73H - - deletion, Chr 5, Harwell 73 other 105463056 Galont - - 16|16 GATA1 activated long non-coding transcript ncRNA 75125 Mm.179221 NM_029174 ENSMUSG00000031270 4930513O06Rik - - X|X F1 RIKEN cDNA 4930513O06 gene protein-coding 387194 NR_029585 ENSMUSG00000065547 Mir199a-1 Mirn199|Mirn199a-1|mir-199a-1 - 9|9 A3 microRNA 199a-1 ncRNA 672972 Gm9586 - - 17|17 C antigenic determinant of rec-A protein pseudogene pseudo 258700 Mm.391163 NM_146705 ENSMUSG00000046913 Olfr1451 MOR202-1 - 19|19 A olfactory receptor 1451 protein-coding 100384877 Gm13864 - - 6 B1|6 15.14 cM ribosomal protein L7A pseudogene pseudo 100038730 Mm.420541 Gm10387 - - 11 B5|11 predicted gene 10387 unknown 18676 Mm.486213 NM_011078 ENSMUSG00000038025 Phf2 GRC5 - 13 A5|13 24.96 cM PHD finger protein 2 protein-coding 100101430 Cia41 - - - collagen induced arthritis QTL 41 unknown 100418070 Gm18982 - - 3|3 F2.2 S-adenosylmethionine decarboxylase, pseudogene 3 pseudogene pseudo 100504330 Gm20177 - - 6 C1|6 30.15 cM predicted gene, 20177 pseudo 545399 Gm5837 EG545399 - 1|1 F RuvB-like protein 1 pseudogene pseudo 631105 Mm.7732 NR_037571 Gm7056 Gm149 - 5 E1|5 predicted gene 7056 ncRNA 100503862 Gm19932 - - 5|5 26.79 cM predicted gene, 19932 pseudo 100417366 Gm18565 - - 14|14 A1 ubiquitin specific peptidase 7 pseudogene pseudo 259026 Mm.223411 NM_147024 ENSMUSG00000055971 Olfr378 MOR135-2 - 11|11 B4 olfactory receptor 378 protein-coding 102635153 Gm15533 - - 7|7 69.89 cM predicted gene 15533 ncRNA 57908 Mm.439916 NM_021346 ENSMUSG00000015597 Zfp318 2610034E08Rik|D530032D06Rik|TZF|Znf318 - 17|17 C zinc finger protein 318 protein-coding 16016 Ighg2b IgG2b|Igh-3|gamma2b - 12 F1|12 62.1 cM immunoglobulin heavy constant gamma 2B other 102631983 LOC102631983 - - X E3 alpha-enolase pseudogene pseudo 14652 Mm.390969 NM_021332 ENSMUSG00000024027 Glp1r GLP-1R|GLP1Rc - 17 A3.3|17 15.8 cM glucagon-like peptide 1 receptor protein-coding 277333 Mm.389223 NM_199472 Gm5069 EG277333 - 1 H4|1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 103694 Mm.254495 NM_134020 ENSMUSG00000004394 Tmed4 1110014L17Rik|AI326346 - 11|11 A1 transmembrane p24 trafficking protein 4 protein-coding 105245013 XR_870868 Gm40527 - - 9 C|9 predicted gene, 40527 ncRNA 171166 Mm.114683 NM_134160 ENSMUSG00000036853 Mcoln3 6720490O21Rik|TRPML3|Va - 3 H2|3 71.03 cM mucolipin 3 protein-coding 102641081 XR_389908 Gm15704 - - 6 G3|6 77.68 cM predicted gene 15704 ncRNA 100616072 Snord116 MBII-85|Pwcr1 - 7 C|7 small nucleolar RNA, C/D box 116 cluster other 654820 Mm.34441 NM_001039559 ENSMUSG00000072844 G530011O06Rik - - X|X F5 and Y E RIKEN cDNA G530011O06 gene ncRNA 100417580 Gm15040 - - X|X F1 zinc finger, ZZ domain containing 3 pseudogene pseudo 104054 Ga - - - greying with age unknown 13164 Mm.280641 NM_010021 ENSMUSG00000010592 Dazl Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2 - 17 C|17 25.86 cM deleted in azoospermia-like protein-coding 98799 AA517114 - - - expressed sequence AA517114 unknown 13532 Mm.382906 NM_010089 ENSMUSG00000058976 Usp17lc Dub-2|Dub2|Dub2b|Usp17l5 - 7 E3|7 54.85 cM ubiquitin specific peptidase 17-like C protein-coding 13284 Del(14)40H Del40H - - deletion, Chr 14, Harwell 40 other 320392 7030407O06Rik - - 12|12 RIKEN cDNA 7030407O06 gene protein-coding 100043475 Gm4462 - - 16 B1|16 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 109280124 LOC109280124 Mm1375 - - VISTA enhancer mm1375 biological-region 17344 Mm.6370 NM_008602 ENSMUSG00000025423 Pias2 6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2 - 18|18 E3 protein inhibitor of activated STAT 2 protein-coding 20491 Mm.7601 NM_009192 ENSMUSG00000022372 Sla Slap|Slap-1 - 15 D2|15 29.3 cM src-like adaptor protein-coding 66679 Mm.4113 NM_175112 ENSMUSG00000027509 Rae1 3230401I12Rik|D2Ertd342e|MNRP|MNRP41 - 2 H3|2 95.66 cM ribonucleic acid export 1 protein-coding 17055 Klra Ly-49|Ly49 - - killer cell lectin-like receptor, subfamily A other 241489 Mm.246613 NM_001081033 ENSMUSG00000075270 Pde11a 6330414F14Rik|A630086N24Rik|Gm350|PDE11A1 - 2|2 C3 phosphodiesterase 11A protein-coding 62625 D14Mit101 - - 14 25.69 cM DNA segment, Chr 14, Massachusetts Institute of Technology 101 unknown 105246772 XR_878715 Gm42011 - - 5 F|5 predicted gene, 42011 ncRNA 100042784 Mm.102816 NM_001177536 ENSMUSG00000075028 Prdm11 8030443D09Rik|AA163972|Gm707 - 2|2 E1 PR domain containing 11 protein-coding 100038726 Mm.388343 XR_875183 G930009F23Rik - - 15 B3.1|15 RIKEN cDNA G930009F23 gene ncRNA 105244247 XR_866578 Gm39890 - - 2 E2|2 predicted gene, 39890 ncRNA 80901 Mm.124289 NM_030712 ENSMUSG00000048521 Cxcr6 BB217514|BONZO|STRL33 - 9 F4|9 74.57 cM chemokine (C-X-C motif) receptor 6 protein-coding 101142 Mm.31345 NM_133927 ENSMUSG00000001518 Itfg2 2700050P07Rik|AI646725 - 6|6 F3 integrin alpha FG-GAP repeat containing 2 protein-coding 329478 C130078N14 - - 2|2 E3 uncharacterized protein C130078N14 protein-coding 105242952 LOC105242952 - - 7 B5 sorbitol dehydrogenase-like pseudo 640268 Nxpe1-ps EG640268|Fam55a|Fam55a-ps - 9|9 A5.3 neurexophilin and PC-esterase domain family, member 1, pseudogene pseudo 102640390 XR_871653 Gm36460 - - 10 B4|10 predicted gene, 36460 ncRNA 15114 Mm.281700 NM_010404 ENSMUSG00000006930 Hap1 HAP-1 - 11 63.47 cM|11 D huntingtin-associated protein 1 protein-coding 102634175 Mm.255217 XR_380678 Gm31822 - - 10 C2|10 predicted gene, 31822 ncRNA 100502892 Gm19437 - - 19|19 36.56 cM predicted gene, 19437 ncRNA 102632722 XR_001780095 Gm30718 - - 11 B5|11 predicted gene, 30718 ncRNA 100041923 Gm13728 - - 2|2 D nudix (nucleoside diphosphate linked moiety X)-type motif 21 pseudogene pseudo 432584 Gm11203 - - 11|11 B5 phosphoglycerate mutase 1 pseudogene pseudo 98303 Mm.348057 NM_175293 ENSMUSG00000044816 D630023F18Rik AI314969 - 1|1 C2 RIKEN cDNA D630023F18 gene protein-coding 100113416 Frct2 - - - fear conditioning traits 2 unknown 100303740 Mm.154378 NR_028478 ENSMUSG00000064837 Snora75 MBI-55 - 1|1 C5 small nucleolar RNA, H/ACA box 75 snoRNA 108169013 XR_001784570 Gm46894 - - 4 D3|4 predicted gene, 46894 protein-coding 100043338 Gm4374 - - 6 C1|6 predicted gene 4374 pseudo 100126460 Trav13n-4 Gm10907 - 14|14 C2 T cell receptor alpha variable 13N-4 other 22122 Mm.22596 NM_031201 ENSMUSG00000022570 Tsta3 AI256181|FX|Tstap35b - 15 D3|15 35.1 cM tissue specific transplantation antigen P35B protein-coding 225997 Mm.215171 NM_153417 ENSMUSG00000024727 Trpm6 CHAK2|TRPM6/CHAK2 - 19|19 B transient receptor potential cation channel, subfamily M, member 6 protein-coding 668127 Gm8988 EG668127 - 19|19 C1 predicted gene 8988 pseudo 100416115 Prdx1-ps Gm17924 - 18|18 E1 peroxiredoxin 1, pseudogene 1 pseudo 216792 Mm.266175 NM_173785 ENSMUSG00000049287 Iba57 4930543L23Rik|A230051G13Rik|C1orf69 - 11|11 B1.3 IBA57 homolog, iron-sulfur cluster assembly protein-coding 102633293 XR_375673 Gm31154 - - 3 C|3 predicted gene, 31154 ncRNA 50505 Mm.287837 NM_015769 ENSMUSG00000022545 Ercc4 AI606920|Xpf - 16|16 A1 excision repair cross-complementing rodent repair deficiency, complementation group 4 protein-coding 15215 hf - - - hepatic fusion unknown 668863 Gm9405 EG668863 - 17|17 E4 predicted gene 9405 pseudo 22340 Mm.15607 NM_011697 ENSMUSG00000024962 Vegfb VEGF-B|Vrf - 19|19 A vascular endothelial growth factor B protein-coding 414120 Mm.129576 E330018M18Rik - - - RIKEN cDNA E330018M18 gene ncRNA 61558 D9Mit177a D9Mit177 - 9 43.65 cM DNA segment, Chr 9, Massachusetts Institute of Technology 177a unknown 52731 D2Wsu39e - - - DNA segment, Chr 2, Wayne State University 39, expressed unknown 384647 Gm15544 EG384647 - 7|7 D2 serine hydroxymethyltransferase 2 pseudogene pseudo 666514 Gm13160 - - 4|4 E1 predicted gene 13160 pseudo 114746 Scpro3 - - - stem cell proliferation 3 unknown 102631567 Gm17188 - - 14|14 1.69 cM predicted gene 17188 protein-coding 16470 Mm.451539 NM_176847 ENSMUSG00000045288 Ush1g Sans|js - 11 E2|11 80.84 cM USH1 protein network component sans protein-coding 12978 Mm.22574 NM_007779 ENSMUSG00000024621 Csf1r AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR - 18 E1|18 34.41 cM colony stimulating factor 1 receptor protein-coding 100044236 Mm.22891 NR_002845 Copg2os2 AW049845|Copg2as2|Lb9|Mit1 - 6|6 A3.3 coatomer protein complex, subunit gamma 2, opposite strand 2 ncRNA 105244440 XR_867277 Gm40047 - - 3 C|3 predicted gene, 40047 ncRNA 140646 Fembm7 - - 19 39.37 cM femoral bone morphometry 7 unknown 20826 Mm.299312 NM_011482 ENSMUSG00000063480 Snu13 FA-1|Fta1|Nhp2l1|Ssfa1 - 15 E1|15 38.38 cM SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) protein-coding 403355 Klra24 Ly49x - - killer cell lectin-like receptor, subfamily A, member 24 protein-coding 108014 Mm.287826 NM_025573 ENSMUSG00000029538 Srsf9 25kDa|2610029M16Rik|SRp30c|Sfrs9 - 5|5 F serine/arginine-rich splicing factor 9 protein-coding 319776 Mm.133120 NM_178768 ENSMUSG00000048108 Tmem72 C230095G01Rik - 6|6 E3 transmembrane protein 72 protein-coding 433161 Gm5501 EG433161 - 18|18 A1 developmental pluripotency associated 4 pseudogene pseudo 70235 Mm.23054 NM_027354 ENSMUSG00000023345 Poc1a 2510040D07Rik|Wdr51a|cha - 9|9 F1 POC1 centriolar protein A protein-coding 62031 D1Mit541 - - 1 81.02 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 541 unknown 105244974 XR_870348 Gm40492 - - 8 A4|8 predicted gene, 40492 ncRNA 102637202 XR_381118 Gm34075 - - 11 A3.3|11 predicted gene, 34075 ncRNA 102466648 NR_105845 ENSMUSG00000098726 Mir6417 Gm27334|mmu-mir-6417 - 5|5 C1 microRNA 6417 ncRNA 102636622 XR_388119 Gm33633 - - 8 E1|8 predicted gene, 33633 ncRNA 102465599 NR_105958 ENSMUSG00000098844 Mir6992 Gm27906|mmu-mir-6992 - 19|19 A microRNA 6992 ncRNA 638580 Mm.373655 NM_001101597 Gm7244 EG638580 - 9|9 A4 predicted gene 7244 protein-coding 102632391 XR_385746 Gm30476 - - 17 E1.3|17 predicted gene, 30476 ncRNA 103574 AA511248 - - - expressed sequence AA511248 unknown 329165 Mm.212066 NM_198127 ENSMUSG00000026782 Abi2 8430425M24Rik|AI839867|C130078H13 - 1|1 C2 abl-interactor 2 protein-coding 100036486 Ssta6 - - 8 38.64 cM susceptibility to Salmonella typhimurium antigens 6 unknown 236792 Mm.291824 NM_146234 ENSMUSG00000061273 Mmgt1 9630048L06Rik|BC032271|Emc5|Mir5116|Tmem32|mir-5116 - X|X A6 membrane magnesium transporter 1 protein-coding 21131 T(2;4)13H T13H - - reciprocal translocation, Chr 2 and 4, Harwell 13 other 109280079 LOC109280079 Mm762 - - VISTA enhancer mm762 biological-region 104582 Mm.44618 NM_001033212 ENSMUSG00000046215 Rprml AW049332 - 11|11 E1 reprimo-like protein-coding 67480 Mm.33206 NM_026186 ENSMUSG00000018541 Cwc25 1300013D05Rik|AA473636|Ccdc49|R75228 - 11|11 D CWC25 spliceosome-associated protein protein-coding 435442 Gm5673 EG435442 - 15|15 D1 predicted gene 5673 pseudo 17907 Mm.14526 NM_016754 ENSMUSG00000030672 Mylpf 2410014J02Rik|MLC-2|Mlc2 - 7|7 F3 myosin light chain, phosphorylatable, fast skeletal muscle protein-coding 16198 Mm.3006 NM_008373 ENSMUSG00000021538 Il9 Il-9|P40 - 13 B1|13 30.06 cM interleukin 9 protein-coding 100039324 NM_001099919 ENSMUSG00000096457 Gm10147 - - X A3.1|X predicted gene 10147 protein-coding 399548 Mm.335112 NM_001013390 ENSMUSG00000046480 Scn4b Gm1471 - 9|9 A5.2 sodium channel, type IV, beta protein-coding 433766 Mm.331961 NM_001039048 ENSMUSG00000028834 Trim63 MuRF1|RF1|Rnf28 - 4|4 D3 tripartite motif-containing 63 protein-coding 52607 Mm.25423 D10Ertd447e - - 10 72.31 cM DNA segment, Chr 10, ERATO Doi 447, expressed unknown 109279971 LOC109279971 Mm612 - - VISTA enhancer mm612 biological-region 102631871 XR_380789 Gm30095 - - 10 D1|10 predicted gene, 30095 ncRNA 104123 Lpn2 LN-2|Lpn-2 - - NZ lupus nephritis 2 protein-coding 19883 Mm.378450 NM_013646 ENSMUSG00000032238 Rora 9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26 - 9 C|9 37.45 cM RAR-related orphan receptor alpha protein-coding 70249 Mm.491423 3100002H09Rik - - 4|4 D2.2 RIKEN cDNA 3100002H09 gene ncRNA 105244049 XR_865836 Gm39732 - - 1 H5|1 predicted gene, 39732 ncRNA 102632501 XR_383809 Gm30559 - - 15 A1|15 predicted gene, 30559 ncRNA 100416846 Gm18291 - - 9|9 E3.3 casein kinase 1, alpha 1 pseudogene pseudo 634731 Mm.483589 NM_001163288 ENSMUSG00000038578 Susd1 A530080P10|Gm12528 - 4|4 B3 sushi domain containing 1 protein-coding 100504680 Gm20348 - - 12 A1.1|12 2.09 cM quinone oxidoreductase PIG3 pseudogene pseudo 258571 Mm.223099 NM_146578 ENSMUSG00000045392 Olfr1033 MOR199-2 - 2|2 D olfactory receptor 1033 protein-coding 105245960 XR_875373 Gm41331 - - 15 D1|15 predicted gene, 41331 ncRNA 258289 Mm.451653 NM_146292 ENSMUSG00000048173 Olfr1324 MOR128-2 - X|X A5 olfactory receptor 1324 protein-coding 102467370 n-TPtgg5 n-Tp15 - 14 C1|14 nuclear encoded tRNA proline 5 (anticodon TGG) tRNA 108491828 LOC108491828 FAdE - - Nr5a1 enhancer in intron 4 biological-region 100862545 LOC100862545 - - X D protein phosphatase 1 regulatory subunit 14B pseudogene pseudo 102632621 Mm.187144 XR_376104 Gm30648 Gm43194 - 3 G3|3 predicted gene, 30648 ncRNA 102635513 XR_386879 Gm32829 - - X A1.1|X predicted gene, 32829 ncRNA 102637537 XR_385204 Gm34321 - - 17 A1|17 predicted gene, 34321 ncRNA 434729 Mm.386954 NM_001038697 ENSMUSG00000072249 Fthl17f EG434729|Fthl17L5|Gm5635 - X A1.1|X ferritin, heavy polypeptide-like 17, member F protein-coding 102640639 Gm36655 - - 19|19 predicted gene, 36655 ncRNA 102641840 Mm.101650 LOC102641840 - - - uncharacterized LOC102641840 ncRNA 15936 Mm.399 NM_010499 ENSMUSG00000053560 Ier2 AI317238|Ch1|Pip92 - 8 C2|8 41.02 cM immediate early response 2 protein-coding 100504540 Mm.483834 Gm20276 - - 10|10 16.65 cM predicted gene, 20276 unknown 18178 Nras-ps2 - - 1 A1|1 2.08 cM neuroblastoma ras oncogene, pseudogene 2 pseudo 258691 Mm.271532 NM_146696 ENSMUSG00000071629 Olfr1477 MOR202-10 - 19|19 A olfactory receptor 1477 protein-coding 71971 Mm.161149 NM_028028 ENSMUSG00000017764 Zswim1 2410003H12Rik|AI850991|BB046916 - 2|2 H3 zinc finger SWIM-type containing 1 protein-coding 225659 Mm.111928 NM_001081073 ENSMUSG00000073542 Cep76 6230425F05Rik|9630013E05 - 18|18 E1 centrosomal protein 76 protein-coding 78004 Mm.41984 NM_030024 ENSMUSG00000045725 Prr15 E130201N16Rik|G90 - 6|6 B3 proline rich 15 protein-coding 18351 Mm.246541 NM_146909 ENSMUSG00000060918 Olfr51 ID7|MOR129-3 - 11|11 B1.3 olfactory receptor 51 protein-coding 24132 Mm.42140 NM_013843 ENSMUSG00000057409 Zfp53 D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8 - 17 A3.2|17 11.4 cM zinc finger protein 53 protein-coding 114775 Mm.432475 Mym - - - myocyte maintenance protein-coding 71238 Mm.389086 NM_001077713 ENSMUSG00000042505 Sdhaf3 0610005M07Rik|4933430A16Rik|Acn9 - 6|6 A1 succinate dehydrogenase complex assembly factor 3 protein-coding 245533 Mm.77759 NM_001081136 ENSMUSG00000015665 Awat1 Dgat2l3 - X|X C3 acyl-CoA wax alcohol acyltransferase 1 protein-coding 102639886 Gm36092 - - 18 E1|18 predicted gene, 36092 pseudo 105245905 XR_875099 Gm41285 - - 15 B2|15 predicted gene, 41285 ncRNA 108167530 XR_001778545 Gm46038 - - 8 A4|8 predicted gene, 46038 ncRNA 111495 Xmmv65 Xmmv-65|Xp-24 - - xenotropic-MCF leukemia virus 65 other 84653 Mm.98505 NM_033041 ENSMUSG00000023781 Hes7 bHLHb37 - 11 B3|11 42.38 cM hes family bHLH transcription factor 7 protein-coding 75182 Mm.197090 4930532G15Rik - - 1|1 RIKEN cDNA 4930532G15 gene protein-coding 102637672 Mm.398336 XR_379271 Gm26787 - - 9 A4|9 predicted gene, 26787 ncRNA 328577 Mm.212960 NM_001256072 ENSMUSG00000096607 7530416G11Rik - - 15|15 E2 RIKEN cDNA 7530416G11 gene protein-coding 105245267 Gm40745 - - 10|10 predicted gene, 40745 ncRNA 105247293 XR_882354 LOC105247293 - - - uncharacterized LOC105247293 ncRNA 102638209 Mm.446929 Gm16152 - - 1|1 16.78 cM predicted gene 16152 ncRNA 97068 C78900 - - - expressed sequence C78900 unknown 102632040 XR_378105 Gm30215 - - 6 G2|6 predicted gene, 30215 ncRNA 102632944 XR_877920 Gm30890 - - 19 D2|19 predicted gene, 30890 ncRNA 258861 Mm.377724 NM_146862 ENSMUSG00000063374 Olfr763 MOR269-2 - 10|10 D3 olfactory receptor 763 protein-coding 68161 Mm.392043 NR_015487 ENSMUSG00000054426 A930005H10Rik - - 3|3 G1 RIKEN cDNA A930005H10 gene ncRNA 102635048 XR_880074 ENSMUSG00000082419 LOC102635048 - - 11 C 60S ribosomal protein L12 pseudogene pseudo 110120549 LOC110120549 - - - VISTA enhancer mm1478 biological-region 13214 Mm.431316 NM_007843 ENSMUSG00000044748 Defb1 AW260221|BD-1 - 8 A2|8 10.35 cM defensin beta 1 protein-coding 667916 Gm8879 EG667916 - 5|5 A1 predicted gene 8879 pseudo 105246625 XR_878062 Gm41890 - - X A1.1|X predicted gene, 41890 ncRNA 114315 Taste7 - - - taste bitterness sensitivity 7 unknown 234686 Mm.87724 NM_177699 ENSMUSG00000014778 Fhod1 BC017144|FHOS|FHOS1 - 8|8 D3 formin homology 2 domain containing 1 protein-coding 666677 Gm8231 EG666677 - 13|13 A3.3 ribosomal protein S4, X-linked pseudogene pseudo 100417681 Gm18761 - - 14|14 C1 ubiquitin family domain containing 1 pseudogene pseudo 61222 D1Mit216 - - 1 40.97 cM DNA segment, Chr 1, Massachusetts Institute of Technology 216 unknown 100502612 Gm19283 - - 17|17 A1 tubulin tyrosine ligase-like family, member 2 pseudogene pseudo 109805 H16 H-16 - - histocompatibility 16 protein-coding 20846 Mm.277406 NM_009283 ENSMUSG00000026104 Stat1 2010005J02Rik|AA408197 - 1 C1.1|1 26.81 cM signal transducer and activator of transcription 1 protein-coding 66126 Mm.29801 NM_170777 ENSMUSG00000013822 Elof1 1110011K10Rik - 9|9 A3 ELF1 homolog, elongation factor 1 protein-coding 102636260 XR_386229 Gm33376 - - 18 D1|18 predicted gene, 33376 ncRNA 321010 Mm.391448 NM_177313 1700006J14Rik - - 10|10 D2 RIKEN cDNA 1700006J14 gene unknown 101055953 XM_011250762 LOC101055953 - - 7 A3 39S ribosomal protein L41, mitochondrial-like protein-coding 100038517 Plast1 Plast14 - - plasma plant sterol 1 unknown 102631501 Mm.135986 XR_379194 Gm29824 - - 9 A4|9 predicted gene, 29824 ncRNA 383528 Gm5256 EG383528 - 1|1 C3 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 pseudogene pseudo 402727 Mm.127269 XR_384996 A730009L09Rik Gm45318 - 16|16 C3.3 RIKEN cDNA A730009L09 gene unknown 102639961 XR_384724 Gm36150 - - 16 B1|16 predicted gene, 36150 ncRNA 106639 Mm.37290 NM_178926 ENSMUSG00000054723 Vmac AI662250 - 17|17 D vimentin-type intermediate filament associated coiled-coil protein protein-coding 241634 Mm.297682 NM_001310641 ENSMUSG00000074812 Spdye4c Gm355|SpeedyB3|SpyB3 - 2|2 F1 speedy/RINGO cell cycle regulator family, member E4C protein-coding 66680 Mm.25119 NM_025699 ENSMUSG00000035399 Oser1 3230401D17Rik|AI256769|Perit1 - 2|2 H3 oxidative stress responsive serine rich 1 protein-coding 545302 Gm9826 EG545302 - 1|1 A1 adenosylhomocysteinase pseudogene pseudo 102467579 n-TMcat16 n-Tm16 - 15 D1|15 nuclear encoded tRNA methionine 16 (anticodon CAT) tRNA 102635909 XR_374254 Gm33126 - - 2 B|2 predicted gene, 33126 ncRNA 329427 Mm.491618 NR_040623 ENSMUSG00000086544 Chn1os3 Gm13704 - 2|2 C3 chimerin 1, opposite strand 3 ncRNA 102635667 XR_373237 Gm32947 - - 1 A4|1 predicted gene, 32947 ncRNA 105245318 XR_872149 Gm40793 - - 10 D2|10 predicted gene, 40793 ncRNA 100035745 Hrq2 - - 15 22.82 cM heart rate QTL 2 unknown 100504712 Gm20367 - - 7|7 69.19 cM predicted gene, 20367 ncRNA 623672 Gm6444 EG623672 - 5|5 F predicted gene 6444 pseudo 102635700 Gm32971 - - 15|15 predicted gene, 32971 pseudo 77015 Mm.45628 NM_029837 ENSMUSG00000016386 Mpped2 239Fb|2700082O15Rik|AV354767|AW060960 - 2 E3|2 55.8 cM metallophosphoesterase domain containing 2 protein-coding 100417187 Gm14655 - - X|X A6 crumbs homolog 1 pseudogene pseudo 100502824 Gm19399 - - 17|17 49.07 cM predicted gene, 19399 protein-coding 50771 Mm.247138 NM_015805 ENSMUSG00000024566 Atp9b AA934181|Atpc2b|IIb|MMR - 18|18 E3 ATPase, class II, type 9B protein-coding 100041938 Vmn2r-ps106 Vmn2r-ps107 - 13|13 B3 vomeronasal 2, receptor, pseudogene 106 pseudo 73410 Mm.443314 NM_028533 ENSMUSG00000096655 1700065D16Rik - - 9|9 E3.3 RIKEN cDNA 1700065D16 gene protein-coding 112044 Kwq2 - - - kidney weight QTL 2 unknown 100579154 Mm.291779 Gm17324 - - 9 43.65 cM predicted gene, 17324 protein-coding 319815 Mm.440789 6030496E16Rik - - 7|7 RIKEN cDNA 6030496E16 gene protein-coding 258797 Mm.347663 NM_146801 ENSMUSG00000094380 Olfr904 MOR167-3 - 9|9 A5.1 olfactory receptor 904 protein-coding 67811 Mm.197493 NM_026389 ENSMUSG00000001100 Poldip2 1300003F06Rik|Pdip38 - 11|11 B5 polymerase (DNA-directed), delta interacting protein 2 protein-coding 624275 Gm10307 EG624275 - 1|1 B eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 328456 6720482D04 - - 14|14 E2.1 uncharacterized protein 6720482D04 protein-coding 100036308 Rafar - - 11 52.22 cM retinoic acid induced forelimb autopod reduction unknown 102635187 XR_387964 Gm32589 - - 8 D2|8 predicted gene, 32589 ncRNA 78570 9630014C11Rik - - 2|2 RIKEN cDNA 9630014C11 gene protein-coding 102633725 XR_382010 Gm31482 - - 12 F2|12 predicted gene, 31482 ncRNA 104360 Mm.273996 NM_027397 ENSMUSG00000032318 Isl2 3110001N10Rik - 9|9 B insulin related protein 2 (islet 2) protein-coding 13199 Mm.390810 NM_001013741 ENSMUSG00000059213 Ddn Gm748 - 15 F1|15 54.69 cM dendrin protein-coding 105245114 XR_871482 Gm40608 - - 10 A3|10 predicted gene, 40608 ncRNA 99183 AU018505 - - - expressed sequence AU018505 unknown 100124571 Vmn2r-ps90 - - 8|8 B3.3 vomeronasal 2, receptor, pseudogene 90 pseudo 102639842 XR_383594 Gm36060 - - 14 D3|14 predicted gene, 36060 ncRNA 16633 Mm.4783 NM_008462 ENSMUSG00000030187 Klra2 Klra30|Ly49b - 6 F3|6 63.44 cM killer cell lectin-like receptor, subfamily A, member 2 protein-coding 100503338 Mm.368494 XR_878081 Gm14636 - - X|X A1.3 predicted gene 14636 ncRNA 20346 Mm.372039 NM_009152 ENSMUSG00000028883 Sema3a Hsema-I|SEMA1|SemD|Semad|coll-1 - 5|5 A1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding 26918 Mm.20452 NM_012016 ENSMUSG00000030866 Ern2 Ern1|Ire1|Ire1b|ire1-beta|mIre1 - 7 F2|7 65.53 cM endoplasmic reticulum (ER) to nucleus signalling 2 protein-coding 100306944 NR_028512 ENSMUSG00000064387 Snora73a E1|E1-7|E1b|U17A - 4|4 D2.3 small nucleolar RNA, H/ACA box 73a snoRNA 228368 Mm.273990 NM_145832 ENSMUSG00000049922 Slc35c1 E430007K15Rik|fuct1 - 2|2 E1 solute carrier family 35, member C1 protein-coding 100504061 Mm.373659 NM_001001494 8030451A03Rik 8030463A06Rik - 4|4 C1 RIKEN cDNA 8030451A03 gene unknown 110659 Pvrl2-rs1 Pvs-rs1 - - poliovirus receptor-related 2, related sequence 1 protein-coding 102631548 Gm29858 - - 18|18 predicted gene, 29858 ncRNA 105244352 XR_866925 Gm39978 - - 2 H2|2 predicted gene, 39978 ncRNA 100035172 Gnf1 - - - growth and fatness 1 unknown 21463 Mm.29758 NM_013687 ENSMUSG00000062859 Tcp11 D17Ken1|Tcp-11 - 17 A3.3|17 14.62 cM t-complex protein 11 protein-coding 434280 Mm.447484 NM_001013812 ENSMUSG00000047935 Sox1ot EG434280|Gm5607 - 8 A1.1|8 Sox1 overlapping transcript ncRNA 102637101 XR_383695 Gm33997 - - 14 E2.2|14 predicted gene, 33997 ncRNA 100415955 Gm14940 - - X|X E3 nucleolin pseudogene pseudo 238692 Mm.486478 NM_177712 ENSMUSG00000069206 Zfp874a C330011K17Rik|Rslcan15|Zfp874 - 13|13 B3 zinc finger protein 874a protein-coding 67434 Mm.102470 NM_026153 ENSMUSG00000022237 Ankrd33b 0610012A05Rik|3021401C12Rik|5730557B15Rik - 15|15 B2 ankyrin repeat domain 33B protein-coding 105244946 XR_870186 Gm40468 - - 8 A2|8 predicted gene, 40468 ncRNA 108168701 XR_001782987 LOC108168701 - - - uncharacterized LOC108168701 ncRNA 102634729 Gm26970 - - 5|5 predicted gene, 26970 pseudo 112309 Hcs2 Hcs - - hepatocarcinogenesis susceptibility 2 unknown 102636991 XR_384431 Gm33909 - - 15 F1|15 predicted gene, 33909 ncRNA 100034934 Vtbt9 - - 10 47.06 cM vertebral trabecular bone trait 9 unknown 77623 Mm.410761 C430039J16Rik - - 13|13 RIKEN cDNA C430039J16 gene protein-coding 100035205 Marq5 - - 15 39.98 cM methamphetamine response QTL 5 unknown 28177 D16Ium34e D16Ium34 - - DNA segment, Chr 16, Indiana University Medical 34, expressed unknown 384015 Gm12461 - - 4|4 B2 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 606541 Gm6068 EG606541|Ppia-ps12_475.1 - 12|12 C1 peptidylprolyl isomerase A (Ppia) pseudogene 12_475.1 pseudo 26403 Mm.185026 NM_022012 ENSMUSG00000004054 Map3k11 2610017K16Rik|Mlk3|PTK1|SPRK - 19 A|19 4.34 cM mitogen-activated protein kinase kinase kinase 11 protein-coding 19088 Mm.25594 NM_011158 ENSMUSG00000002997 Prkar2b AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta) - 12|12 A3 protein kinase, cAMP dependent regulatory, type II beta protein-coding 100034910 Hdlq28 - - 16 20.26 cM HDL QTL 28 unknown 258922 Mm.223327 NM_146920 ENSMUSG00000043385 Olfr267 MOR262-1 - 4|4 B3 olfactory receptor 267 protein-coding 108167648 XR_001779152 LOC108167648 - - 1 D uncharacterized LOC108167648 ncRNA 268527 Mm.428062 NM_015764 ENSMUSG00000036523 Greb1 5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575 - 12|12 A1.1 gene regulated by estrogen in breast cancer protein protein-coding 105246946 Mm.451565 Gm26703 - - 5|5 predicted gene, 26703 ncRNA 16907 Mm.7362 NM_010722 ENSMUSG00000062075 Lmnb2 - - 10 C1|10 39.72 cM lamin B2 protein-coding 75627 Mm.25937 NM_178392 ENSMUSG00000021113 Snapc1 2700033G17Rik|AU015787 - 12|12 C3 small nuclear RNA activating complex, polypeptide 1 protein-coding 54607 Mm.91920 NM_018821 ENSMUSG00000056153 Socs6 1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4 - 18|18 E4 suppressor of cytokine signaling 6 protein-coding 100126199 Tsti4 - - - tail suspension test immobility 4 unknown 97890 C85163 - - - expressed sequence C85163 protein-coding 102632880 XR_378001 Gm30842 - - 6 F1|6 predicted gene, 30842 ncRNA 102634978 Gm32428 - - 7|7 predicted gene, 32428 pseudo 102639993 XR_374615 Gm36174 - - 2 C2|2 predicted gene, 36174 ncRNA 17961 Mm.4695 NM_010874 ENSMUSG00000051147 Nat2 AV377607 - 8 B3.2|8 33.38 cM N-acetyltransferase 2 (arylamine N-acetyltransferase) protein-coding 102638119 XR_383574 Gm34757 - - 14 D2|14 predicted gene, 34757 ncRNA 75245 Mm.159475 NR_131023 ENSMUSG00000097361 4930550C17Rik - - 13|13 B1 RIKEN cDNA 4930550C17 gene ncRNA 108052 Mm.33832 NM_028122 ENSMUSG00000059336 Slc14a1 2610507K20Rik|3021401A05Rik|UT-B|Utb1 - 18|18 E3 solute carrier family 14 (urea transporter), member 1 protein-coding 100417330 Gm18535 - - 4|4 D1 BRCA1 associated RING domain 1 pseudogene pseudo 61781 D3Mit250 - - 3 51.21 cM DNA segment, Chr 3, Massachusetts Institute of Technology 250 unknown 666861 Gm8331 EG666861 - X|X F2 lysyl-tRNA synthetase pseudogene pseudo 17193 Mm.259308 NM_010774 ENSMUSG00000030322 Mbd4 Med1 - 6 E3|6 53.72 cM methyl-CpG binding domain protein 4 protein-coding 105242615 Gm13781 - - 6|6 12.52 cM predicted gene 13781 ncRNA 108168124 n-TQctg8 Trnaq-cug|n-Tq8 - 13 A3.1|13 nuclear encoded tRNA glutamine 8 (anticodon CTG) tRNA 53138 59K2-Sp6 - - - DNA segment, 59K2-Sp6 unknown 327744 Mm.295265 NM_183198 ENSMUSG00000087177 E130307A14Rik - - 10|10 B1 RIKEN cDNA E130307A14 gene ncRNA 105242930 XM_017312422 Gm39002 - - 7 B3|7 predicted gene, 39002 protein-coding 100126765 Mm.471586 NM_001177587 ENSMUSG00000092322 Esp36 Gm20408 - 17 B1|17 19.16 cM exocrine gland secreted peptide 36 protein-coding 606518 Gm6053 EG606518|Map1lc3-ps7 - 12|12 A1.1 microtubule-associated protein 1 light chain 3 pseudogene 7 pseudo 16876 Mm.250732 NM_010714 ENSMUSG00000019230 Lhx9 3110009O07Rik|BB104635|LH2B - 1|1 E4 LIM homeobox protein 9 protein-coding 665742 Vmn2r-ps95 EG665742|EG665767|Gm7764 - 13 B3|13 vomeronasal 2, receptor, pseudogene 95 pseudo 69976 Mm.20216 NM_175154 ENSMUSG00000027207 Galk2 2810017M24Rik|AI327030|Gk2 - 2|2 F1 galactokinase 2 protein-coding 102638485 Tmem167-ps2 Gm29619 - 7 A1|7 transmembrane protein 167, pseudogene 2 pseudo 105242607 XR_868820 Gm38775 - - 6 A3.1|6 predicted gene, 38775 ncRNA 114059 Axtrb5 - - - anxiety-related behavior 5 unknown 435921 Mm.489572 NM_001277202 Clec2f Clec2f-ps|Clr-c|Clrc|Clrz - 6|6 F3 C-type lectin domain family 2, member f protein-coding 493021 Tnbs2 - - 11 20.62 cM tri-nitrobenzene sulfonic acid susceptible 2 unknown 75278 Mm.489039 XR_382626 4930547H16Rik - - 13|13 C1 RIKEN cDNA 4930547H16 gene ncRNA 105243800 Gm39569 - - 11|11 predicted gene, 39569 ncRNA 105242638 XR_869009 Gm38797 - - 6 B2.1|6 predicted gene, 38797 ncRNA 62244 D17Mit76 - - 17 55.48 cM DNA segment, Chr 17, Massachusetts Institute of Technology 76 unknown 71562 Mm.273958 NM_027827 ENSMUSG00000017718 Afmid 9030621K19Rik|Ammd|FKF|KFA|Kf|formylase - 11|11 E2 arylformamidase protein-coding 100035647 Knyw3 - - - kidney weight 3 unknown 105244991 XR_870519 Gm40508 - - 9 A1|9 predicted gene, 40508 ncRNA 53325 Mm.287163 NM_016812 ENSMUSG00000025316 Banp AA408158|SMAR1 - 8 E1|8 70.82 cM BTG3 associated nuclear protein protein-coding 11784 Mm.4657 NM_007461 ENSMUSG00000030519 Apba2 X11-like|X11L|XllL|mXllL - 7 C|7 34.65 cM amyloid beta (A4) precursor protein-binding, family A, member 2 protein-coding 100039210 Mm.460394 XM_006496587 Gm2102 - - 1 C4|1 predicted gene 2102 protein-coding 78194 Mm.251457 NR_040754 ENSMUSG00000111767 4930546K05Rik - - 9|9 A5.1 RIKEN cDNA 4930546K05 gene ncRNA 52680 Mm.449839 D13Ertd787e AU021389|C77215 - 13 21.67 cM DNA segment, Chr 13, ERATO Doi 787, expressed protein-coding 20404 Mm.143603 NM_019535 ENSMUSG00000028488 Sh3gl2 9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a - 4 C4|4 40.23 cM SH3-domain GRB2-like 2 protein-coding 100038367 Mm.491744 Gm10513 - - - predicted gene 10513 ncRNA 100125848 Sh1 - - - sperm hammerhead 1 unknown 100035445 Bmd24 - - - bone mineral density 24 unknown 105245429 Gm40885 - - 12|12 predicted gene, 40885 ncRNA 75918 4930586H24Rik - - 16|16 RIKEN cDNA 4930586H24 gene protein-coding 100048798 NR_002691 LOC100048798 - - 11|11 ribosomal protein L6 pseudogene pseudo 102633284 Gm13787 - - 2 E1|2 50.63 cM predicted gene 13787 pseudo 102636783 Gm33759 - - 3|3 predicted gene, 33759 ncRNA 61580 DXMit143 - - - DNA segment, Chr X, Massachusetts Institute of Technology 143 unknown 105246437 Gm41727 - - 18|18 predicted gene, 41727 ncRNA 19348 Mm.258846 NM_009004 ENSMUSG00000003779 Kif20a AA415432|Rab6kifl - 18 B1|18 18.69 cM kinesin family member 20A protein-coding 100216460 Itpa-ps2 - - 9|9 E3.3 inosine triphosphatase (nucleoside triphosphate pyrophosphatase) pseudogene 2 pseudo 108167789 XM_017314174 ENSMUSG00000094632 LOC108167789 - - 10 D3 olfactory receptor 10C1-like protein-coding 105244662 Mm.417697 NR_131922 ENSMUSG00000086896 Cyp4x1os Gm12835 - 4 D1|4 52.78 cM cytochrome P450, family 4, subfamily x, polypeptide 1, opposite strand ncRNA 100504631 NM_053240 Vmn1r239-ps V1rb10|Vmn1r239 - X|X F2 vomeronasal 1 receptor 239, pseudogene pseudo 108168351 LOC108168351 - - 17 A3.2 sperm motility kinase Y-like pseudo 26358 Mm.14609 NM_011921 ENSMUSG00000024747 Aldh1a7 AI987940|Ahd2-like|Aldh-pb|Aldh1a4|Aldhpb - 19 B|19 13.95 cM aldehyde dehydrogenase family 1, subfamily A7 protein-coding 105245569 XR_873705 Gm41010 - - 13 C3|13 predicted gene, 41010 ncRNA 108511946 Alas2r3 - - X F3 Alas2R3 erythroid cis-regulatory module biological-region 195522 Mm.169620 NM_183140 ENSMUSG00000045268 Zfp691 6430544H17Rik|Znf691 - 4|4 D2.1 zinc finger protein 691 protein-coding 100038595 Mm.385206 NR_033543 ENSMUSG00000073739 Gm16287 - - 4 D3|4 predicted gene 16287 ncRNA 100526540 NR_037276 ENSMUSG00000092988 Mir3093 mir-3093|mmu-mir-3093 - 3 F1|3 38.78 cM microRNA 3093 ncRNA 214575 Mm.252800 NM_001134741 ENSMUSG00000060985 Tdrd5 Gm103 - 1|1 G3 tudor domain containing 5 protein-coding 75842 Mm.376311 4930556H04Rik - - 12|12 RIKEN cDNA 4930556H04 gene protein-coding 258623 Mm.271474 NM_146630 ENSMUSG00000045202 Olfr123 MOR256-9 - 17|17 B1 olfactory receptor 123 protein-coding 76843 Mm.189102 NM_029766 ENSMUSG00000037474 Dtl 2810047L02Rik|5730564G15Rik|L2dtl|Ramp - 1|1 H6 denticleless E3 ubiquitin protein ligase protein-coding 104600 Mm.383771 AW125324 - - - expressed sequence AW125324 protein-coding 52038 Mm.338663 D10Ertd755e - - - DNA segment, Chr 10, ERATO Doi 755, expressed unknown 330671 Mm.133741 NM_177897 ENSMUSG00000055629 B4galnt4 BC038881|Gm1095|beta4GalNAcT4 - 7|7 F5 beta-1,4-N-acetyl-galactosaminyl transferase 4 protein-coding 434866 Mm.491025 NM_001114400 ENSMUSG00000096834 Gm15127 - - X|X F2 predicted gene 15127 protein-coding 62462 D14Mit266 - - 14 64.86 cM DNA Segment, Chr 14 Massachusetts Institute of Technology 266 unknown 330737 Mm.381743 NR_046181 ENSMUSG00000109761 5430403N17Rik 5430403N17 - 8|8 A4 RIKEN cDNA 5430403N17 gene ncRNA 108248 Gapdh-ps13 Gapd-ps13 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 13 pseudo 108615 Iap5ra12 - - - intracisternal A-type particle, U5 region, SINE repeat a-12 other 58234 Mm.146855 NM_021423 ENSMUSG00000022623 Shank3 AI841104|SHANK3c-3|SHANK3c-4|Shank3b - 15|15 E3 SH3 and multiple ankyrin repeat domains 3 protein-coding 246109 Lifespan3 - - 12 55.11 cM life span 3 unknown 622402 Mm.27447 NM_013777 ENSMUSG00000021211 Akr1c12 AI266976|Akra - 13|13 A1 aldo-keto reductase family 1, member C12 protein-coding 66549 Mm.36785 NM_025630 ENSMUSG00000021681 Aggf1 2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q - 13|13 D1 angiogenic factor with G patch and FHA domains 1 protein-coding 53818 Bat1b Bat-1|Bat1|D17H6S81E|D17H6S81E-2|D6S81Eh - - HLA-B-associated transcript 1B unknown 16848 Mm.12834 NM_008494 ENSMUSG00000029570 Lfng AW061165 - 5 G2|5 79.15 cM LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 105244560 XR_867648 Gm40153 Gm42563 - 3 G3|3 predicted gene, 40153 ncRNA 72575 Mm.59516 NR_038184 C430049B03Rik 2700063P19Rik|9430052C07Rik|mir-322|mir-351|mir-503 - X|X A5 RIKEN cDNA C430049B03 gene ncRNA 52199 D8Ertd107e - - 8 61.58 cM DNA segment, Chr 8, ERATO Doi 107, expressed unknown 61942 D6Mit311 - - 6 19.29 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 311 unknown 102633244 Mm.415444 NR_155863 Gm26710 - - 10 C1|10 predicted gene, 26710 ncRNA 102635417 Gm32763 - - 6|6 predicted gene, 32763 ncRNA 93937 D16Jhu77 461J4.T7 - - DNA segment, Chr 16, Johns Hopkins University 77 unknown 667728 NR_132443 Hist1h2al EG667728 - 13|13 A5 histone cluster 1, H2al pseudo 73096 2900092N11Rik - - 3|3 RIKEN cDNA 2900092N11 gene protein-coding 102637348 Gm34183 - - 10|10 predicted gene, 34183 ncRNA 105243681 XR_882303 Gm39512 - - X A5|X predicted gene, 39512 ncRNA 668761 Rpl27a-ps2 EG668761|Gm9339 - 14|14 E3 ribosomal protein L27A, pseudogene 2 pseudo 665552 Vmn2r-ps44 EG665552|Gm7683 - 7 A1|7 vomeronasal 2, receptor, pseudogene 44 pseudo 329251 Mm.188709 NM_001081307 ENSMUSG00000073557 Ppp1r12b 1810037O03Rik|9530009M10Rik|AI132431|Mypt2 - 1|1 E4 protein phosphatase 1, regulatory (inhibitor) subunit 12B protein-coding 93905 D16Jhu41 190J24.T7 - - DNA segment, Chr 16, Johns Hopkins University 41 unknown 270802 Mm.209172 NM_173022 ENSMUSG00000053684 BC048403 E030027L10 - 10|10 D2 cDNA sequence BC048403 protein-coding 105245603 Gm41034 - - 13|13 predicted gene, 41034 protein-coding 62013 D6Mit366 - - 6 53.29 cM DNA segment, Chr 6, Massachusetts Institute of Technology 366 unknown 666383 Gm8074 EG666383 - 9|9 E1 predicted gene 8074 protein-coding 75341 Mm.386821 NM_029257 4930564C03Rik - - 17|17 B3 RIKEN cDNA 4930564C03 gene protein-coding 105242927 XM_011250936 Gm38999 C7H19orf84 - 7 B3|7 predicted gene, 38999 protein-coding 73470 Mm.67677 NM_028547 ENSMUSG00000046755 Kif2b 1700063D03Rik - 11|11 D kinesin family member 2B protein-coding 100036389 Actre6 - - - activity response to ethanol 6 unknown 57439 Mm.393140 NM_020588 ENSMUSG00000042305 Tmem183a 1300007B12Rik|1700020N19Rik|Tmem183 - 1|1 E4 transmembrane protein 183A protein-coding 225131 Mm.204524 NM_153085 ENSMUSG00000024283 Wac 1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4 - 18|18 A1 WW domain containing adaptor with coiled-coil protein-coding 233424 Mm.486619 NM_177695 ENSMUSG00000038540 Tmc3 9030203A06 - 7|7 D3 transmembrane channel-like gene family 3 protein-coding 68521 Mm.274708 NM_001014995 ENSMUSG00000032657 Fam189b 1110013L07Rik - 3|3 F1 family with sequence similarity 189, member B protein-coding 270150 Mm.347681 NM_001081369 ENSMUSG00000070306 Ccdc153 - - 9|9 A5.2 coiled-coil domain containing 153 protein-coding 108545 Ms13-11 Ms13-Ps11 - - minisatellite 13-11 detected by M13 phage probe other 73802 4930401B06Rik - - 1|1 C5 RIKEN cDNA 4930401B06 gene protein-coding 77316 Mm.126426 C030011L09Rik - - 2|2 RIKEN cDNA C030011L09 gene protein-coding 100861627 LOC100861627 - - X A2 X-linked lymphocyte-regulated protein PM1-like pseudo 76031 5830448L01Rik - - 14|14 B RIKEN cDNA 5830448L01 gene protein-coding 78417 9530034D02Rik - - 6|6 RIKEN cDNA 9530034D02 gene protein-coding 56316 Mm.19937 NM_019802 ENSMUSG00000053460 Ggcx - - 6|6 C1 gamma-glutamyl carboxylase protein-coding 111592 Pmv43 Pmv-43 - - polytropic murine leukemia virus 43 other 110119 Mm.247218 NM_025837 ENSMUSG00000032306 Mpi 1110002E17Rik|AI315153|Mpi-1|Mpi1 - 9 B|9 31.05 cM mannose phosphate isomerase protein-coding 97690 C77027 - - - expressed sequence C77027 protein-coding 76615 Mm.272794 NM_029674 ENSMUSG00000039720 Got1l1 1700083M11Rik - 8|8 A2 glutamic-oxaloacetic transaminase 1-like 1 protein-coding 19752 Mm.235538 NM_011271 ENSMUSG00000035896 Rnase1 AI574248|Rib-1|Rib1 - 14 C1|14 26.4 cM ribonuclease, RNase A family, 1 (pancreatic) protein-coding 102634792 XR_381078 Gm32293 - - 11 A3.1|11 predicted gene, 32293 ncRNA 105246696 XR_878488 Gm41943 - - 1 E3|1 predicted gene, 41943 ncRNA 67218 Mm.243777 2810038D20Rik - - - RIKEN cDNA 2810038D20 gene protein-coding 102632530 XR_388294 Gm30581 - - 19 A|19 predicted gene, 30581 ncRNA 102639473 Mm.126786 XR_375342 ENSMUSG00000085905 Gm14273 - - 2 H3|2 94.83 cM predicted gene 14273 ncRNA 105244530 XR_867568 LOC105244530 - - 3 F3 uncharacterized LOC105244530 ncRNA 100043163 Gm4275 Dfa - 7 F3|7 predicted gene 4275 protein-coding 100503749 Gm15084 - - X|X 68.46 cM predicted gene 15084 pseudo 110372 Tcrd-V7 - - - T cell receptor delta, variable 7 other 27643 Mm.3979 NM_145405 ENSMUSG00000015290 Ubl4a DXHXS254E|DXS254E|DXS254Eh|Gdx|Ubl4 - X A7.3|X 38.0 cM ubiquitin-like 4A protein-coding 62840 D12Mit227 - - 12 38.42 cM DNA segment, Chr 12, Massachusetts Institute of Technology 227 unknown 105244094 Gm39768 - - 2|2 predicted gene, 39768 ncRNA 75124 Mm.179243 NM_029173 ENSMUSG00000021396 Nxnl2 4930519N16Rik|Rdcvf2 - 13|13 A5 nucleoredoxin-like 2 protein-coding 791286 Mm.446684 Gm9886 - - - predicted gene 9886 protein-coding 100036079 Arigg5 - - - anti-RBC IgG antibodies 5 unknown 102640688 Gm29498 - - Y|Y predicted gene 29498 ncRNA 75007 Mm.279287 NM_133858 ENSMUSG00000038712 Mindy1 1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni - 3|3 F2.1 MINDY lysine 48 deubiquitinase 1 protein-coding 100416283 Gm14441 - - 2|2 A3 ribosomal protein L17 pseudogene pseudo 330695 Mm.34210 NM_183315 ENSMUSG00000048644 Ctxn1 BC028881|Ctxn - 8 A1.1|8 1.99 cM cortexin 1 protein-coding 110995 Tdg-ps1 - - - thymine DNA glycosylase, pseudogene 1 pseudo 319604 Mm.260362 NM_178764 ENSMUSG00000029461 Fam168a 2610030B18Rik|B930006L02Rik|mKIAA0280 - 7|7 E2 family with sequence similarity 168, member A protein-coding 78388 Mm.228797 NM_080638 ENSMUSG00000030681 Mvp 2310009M24Rik|LRP|VAULT1 - 7|7 F3 major vault protein protein-coding 105243901 XR_865337 Gm39622 - - 1 B|1 predicted gene, 39622 ncRNA 60819 D17Mit1009 D4Mit60 - 17 28.37 cM DNA segment, Chr 17, Massachusetts Institute of Technology 1009 unknown 105244179 Gm39832 - - 2|2 predicted gene, 39832 ncRNA 62474 D19Mit124 - - 19 49.76 cM DNA Segment, Chr 19 Massachusetts Institute of Technology 124 unknown 100418051 Gm18967 - - 2|2 E4 cytidine and dCMP deaminase domain containing 1 pseudogene pseudo 83436 Mm.261122 NM_031257 ENSMUSG00000031557 Plekha2 6430512N22Rik|AI851530|AU041791|TAPP2|W91773 - 8|8 A2 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2 protein-coding 259069 Mm.377820 NM_147066 ENSMUSG00000107573 Olfr1389 MOR256-1 - 11|11 B1.2 olfactory receptor 1389 protein-coding 666962 Gm8384 EG666962 - 1 C1.1|1 THO complex 4 pseudogene pseudo 102632297 XR_382554 Gm30409 - - 13 B3|13 predicted gene, 30409 ncRNA 108473 Ms88 MMS88 - - minisatellites detected by probe MMS88 other 319522 D930046H04Rik - - 7|7 E1 RIKEN cDNA D930046H04 gene unknown 625969 Gm6640 EG625969 - 16 B1|16 ATP-binding cassette, sub-family E (OABP), member 1 pseudogene pseudo 100417356 Gm18556 - - 10|10 C1 sorting nexin family member 27 pseudogene pseudo 66091 Mm.17851 NM_025348 ENSMUSG00000035674 Ndufa3 1010001M12Rik|1700022J01Rik - 7|7 A1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 protein-coding 652925 Mm.439954 NM_001081029 ENSMUSG00000079659 Tmem243 4930420K17Rik|E030031F02Rik - 5|5 A1 transmembrane protein 243, mitochondrial protein-coding 102466907 NR_105825 ENSMUSG00000098513 Mir6399 Gm27667|mir-6399|mmu-mir-6399 - 4|4 D3 microRNA 6399 ncRNA 234964 Mm.32237 NM_181816 ENSMUSG00000039977 Deup1 4933401K09Rik|Ccdc67 - 9|9 A2 deuterosome assembly protein 1 protein-coding 667000 Gm8415 EG667000 - 10|10 C1 predicted gene 8415 pseudo 100034994 Bmch5 - - 11 7.3 cM bone mechanical trait 5 unknown 27448 1T - - - DNA segment, 1T unknown 666558 Gm8162 EG666558 - 9|9 A4 U2 small nuclear ribonucleoprotein B pseudogene pseudo 16508 Mm.425316 NM_019697 ENSMUSG00000060882 Kcnd2 AI839615|AW555701|Kv4.2|R75121|mKIAA1044 - 6 A2-A3.1|6 8.49 cM potassium voltage-gated channel, Shal-related family, member 2 protein-coding 109524 Htas2 Ht2 - - hypothermia due to alcohol sensitivity 2 unknown 111783 Iapls1-6 - - - intracisternal A particle, lymphocyte specific 1-6 other 102635613 XR_391659 Gm32903 - - 7 D3|7 predicted gene, 32903 ncRNA 60988 D19Mit7 - - 19 46.94 cM DNA segment, Chr 19, Massachusetts Institute of Technology 7 unknown 105243052 XR_869932 Gm39085 - - 7 F3|7 predicted gene, 39085 ncRNA 102633677 XR_375971 5330425B07Rik - - 3|3 G1 RIKEN cDNA 5330425B07 gene ncRNA 102634243 XR_386358 Gm31875 - - 18 E3|18 predicted gene, 31875 ncRNA 112131 Aaiq1 - - 4 61.67 cM aromatase activity QTL 1 unknown 100502659 Gm17522 - - X|X 49.81 cM predicted gene, 17522 protein-coding 626940 Gm6721 EG626940 - 10|10 C1 predicted gene 6721 pseudo 100534344 Gm21035 - - 7|7 B4 predicted gene, 21035 pseudo 62923 D10Mit259 - - 10 37.15 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 259 unknown 668920 Gm14113 - - 2|2 G2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 112353 Mpsq1 - - - Mycoplasma pulmonis susceptibility QTL 1 unknown 100035189 Cplaq11 - - - circadian period of locomotor activity 11 unknown 61664 D7Mit233 - - 7 37.63 cM DNA segment, Chr 7, Massachusetts Institute of Technology 233 unknown 76629 Mm.159750 NM_029681 ENSMUSG00000040576 Tmem270 1700111I05Rik|Wbscr28 - 5|5 G2 transmembrane protein 270 protein-coding 61031 D8Mit123 - - 8 5.73 cM DNA segment, Chr 8, Massachusetts Institute of Technology 123 unknown 19762 Mm.5163 NM_009065 ENSMUSG00000057455 Rit2 RIBA|Rin|Roc2 - 18|18 B1 Ras-like without CAAX 2 protein-coding 68327 Mm.180687 NM_026676 ENSMUSG00000015126 Tsr3 0610007P22Rik|1110014B11Rik|AL022759 - 17|17 A3.3 TSR3 20S rRNA accumulation protein-coding 628991 NM_001310328 ENSMUSG00000067679 Obp1b EG628991|OBP-1b|OBP7 - X|X B odorant binding protein IB protein-coding 100039778 Gm14666 - - X|X A6 predicted gene 14666 pseudo 20479 Mm.18705 NM_009190 ENSMUSG00000009907 Vps4b 8030489C12Rik|Skd1 - 1|1 E2.1 vacuolar protein sorting 4B protein-coding 111908 Iap5rc6 - - - intracisternal A-type particle, U5 region, SINE repeat c-6 other 78518 2900009I19Rik - - - RIKEN cDNA 2900009I19 gene protein-coding 328287 Mm.235072 NR_030701 Gm20554 D430050G20 - 13|13 C1 predicted gene, 20554 ncRNA 100036413 Mfat5 - - - M-line adipose tissue, general adiposity 5 unknown 14365 Mm.214687 NM_021458 ENSMUSG00000007989 Fzd3 AU020229|D930050A07Rik|Fz3 - 14 D1|14 34.09 cM frizzled class receptor 3 protein-coding 100041870 Mm.442083 Gm3556 - - 9 A3|9 predicted gene 3556 protein-coding 105246462 XR_877474 Gm41748 - - 18 E1|18 predicted gene, 41748 ncRNA 28049 D16Ium25e D16Ium25 - - DNA segment, Chr 16, Indiana University Medical 25, expressed unknown 258551 Mm.377564 NM_146558 ENSMUSG00000050803 Olfr866 MOR145-5 - 9|9 A3 olfactory receptor 866 protein-coding 26386 Mm.89204 NM_011939 ENSMUSG00000033249 Hsf4 HSF 4|HSTF 4|HSTF4|ldis1|mHSF4 - 8|8 D3 heat shock transcription factor 4 protein-coding 14539 Mm.284825 NM_008106 ENSMUSG00000031394 Opn1mw Gcp - X|X A7.3 opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan) protein-coding 100034835 Radpf4 - - 18 32.39 cM radiation pulmonary fibrosis 4 unknown 105246142 Gm41478 - - 16|16 predicted gene, 41478 pseudo 73208 Mm.383453 XR_874656 ENSMUSG00000097303 3110083C13Rik - - 14|14 C3 RIKEN cDNA 3110083C13 gene ncRNA 61336 D3Mit200 - - 3 72.41 cM DNA segment, Chr 3, Massachusetts Institute of Technology 200 unknown 109417 Bwfq2 - - - body weight and fat QTL 2 unknown 100036006 Dbsq6 - - - diabetes susceptibility QTL 6 unknown 100286842 Gm14663 - - X|X A6 estrogen related receptor, beta pseudogene pseudo 230082 Mm.285797 NM_139236 ENSMUSG00000028430 Nol6 AA410091|Nrap - 4|4 A5 nucleolar protein family 6 (RNA-associated) protein-coding 102632081 XR_373380 Gm30248 - - 1 B|1 predicted gene, 30248 ncRNA 102636400 XR_384915 Gm33475 - - 16 C1.2|16 predicted gene, 33475 ncRNA 93759 Mm.351459 NM_019812 ENSMUSG00000020063 Sirt1 AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha - 10|10 B4 sirtuin 1 protein-coding 70726 Mm.34019 NM_145154 ENSMUSG00000038742 Angptl6 6330404E11Rik|AGF|ARP3|Arp5 - 9|9 A3 angiopoietin-like 6 protein-coding 71787 Mm.239183 NM_027925 ENSMUSG00000028898 Trnau1ap 1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2 - 4 D2.3|4 tRNA selenocysteine 1 associated protein 1 protein-coding 102633643 XR_376514 4930552P06Rik - - 4|4 C7 RIKEN cDNA 4930552P06 gene ncRNA 105244467 XR_867356 LOC105244467 - - 3 E1 uncharacterized LOC105244467 ncRNA 56805 Mm.391248 NM_020256 ENSMUSG00000048047 Zbtb33 AW260253|E130014G12Rik|Kaiso|Znf-kaiso - X|X A3.3 zinc finger and BTB domain containing 33 protein-coding 434130 Mm.459162 NM_001101535 ENSMUSG00000041117 Ccdc8 - - 7|7 A2 coiled-coil domain containing 8 protein-coding 102639009 Mm.403091 XR_001783321 Gm13630 - - 2 C1.3|2 39.13 cM predicted gene 13630 ncRNA 111461 Gln3-6 - - - GLN retrotransposon family 3-6 other 100042886 Gm13806 Hspd1-20p - 2|2 E1 heat shock protein 1 (chaperonin) pseudogene 20 pseudo 234366 Mm.270044 NM_145596 ENSMUSG00000036180 Gatad2a 1110066C11Rik|BC031407|C80248 - 8|8 B3.3 GATA zinc finger domain containing 2A protein-coding 77766 Mm.3608 NM_023876 ENSMUSG00000027167 Elp4 A330107A17Rik|Paxneb - 2 E3|2 55.33 cM elongator acetyltransferase complex subunit 4 protein-coding 399605 D330045E12Rik - - - RIKEN cDNA D330045E12 gene protein-coding 67871 Mm.378232 NM_026422 ENSMUSG00000026887 Mrrf 2400002D02Rik|MRFF|MTRRF|RRF - 2|2 B mitochondrial ribosome recycling factor protein-coding 100040941 Gm3054 - - 5 G2|5 predicted gene 3054 protein-coding 105246409 Mm.353627 NM_001033392 3222401L13Rik - - 18|18 B3 RIKEN cDNA 3222401L13 gene ncRNA 633498 Gm7114 EG633498 - 1 B|1 SET domain containing 3 pseudogene pseudo 60841 D5Mit41 - - 5 50.68 cM DNA segment, Chr 5, Massachusetts Institute of Technology 41 unknown 52561 D13Ertd205e - - 13 32.74 cM DNA segment, Chr 13, ERATO Doi 205, expressed unknown 102638710 Gm26963 - - 17|17 predicted gene, 26963 pseudo 320683 Mm.156718 NM_177226 ENSMUSG00000045639 Zfp629 9330199A09Rik|Znf629 - 7|7 F3 zinc finger protein 629 protein-coding 331480 Mm.145294 NR_026596 Gm5126 EG331480 - X|X D predicted pseudogene 5126 ncRNA 100417572 Gm18693 - - 2|2 C3 baculoviral IAP repeat-containing 2 pseudogene pseudo 100216538 NR_028570 ENSMUSG00000065094 Snord1a snR38 - 11 E2|11 small nucleolar RNA, C/D box 1A snoRNA 100416786 Gm20585 - - 1|1 H6 SCAN domain containing 3 pseudogene pseudo 77435 9430076D03Rik - - 16|16 RIKEN cDNA 9430076D03 gene protein-coding 218885 Mm.202257 NM_145460 ENSMUSG00000021906 Oxnad1 2410002F01Rik|AW492292|BC019806 - 14|14 B oxidoreductase NAD-binding domain containing 1 protein-coding 101024 Mm.354848 BB013350 - - - expressed sequence BB013350 unknown 194189 Gm13136 - - 4|4 E1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene pseudo 51854 D3Sut1e - - - DNA segment, Chr 3, Sutcliffe 1 expressed unknown 232414 Mm.391518 NM_172732 ENSMUSG00000046080 Clec9a 9830005G06Rik|DNGR-1 - 6|6 F3 C-type lectin domain family 9, member a protein-coding 360109 D17Jcs102 - - - DNA segment, Chr 17, John C. Schimenti 102 unknown 75066 Mm.416932 NR_040602 ENSMUSG00000101701 4930521E06Rik - - 1|1 C1.1 RIKEN cDNA 4930521E06 gene ncRNA 100628616 NR_039547 ENSMUSG00000105557 Mir3966 mmu-mir-3966|mu-mir-3966 - 10 C3|10 50.25 cM microRNA 3966 ncRNA 360055 D17Jcs63 - - - DNA segment, Chr 17, John C. Schimenti 63 unknown 53049 O12SP6 - - - DNA segment, O12SP6 unknown 100043134 Gm4252 - - 17|17 B1 predicted gene 4252 pseudo 105246252 Gm41560 - - 17|17 predicted gene, 41560 ncRNA 69679 Mm.416890 NR_045757 ENSMUSG00000102106 2310043O21Rik - - 15|15 B3.1 RIKEN cDNA 2310043O21 gene ncRNA 100042335 XR_880510 ENSMUSG00000067058 Rps15a-ps5 Gm10196 - 5|5 E5 ribosomal protein S15A, pseudogene 5 pseudo 98105 C77097 - - - expressed sequence C77097 protein-coding 102636119 XR_378858 Gm33281 - - 8 A3|8 predicted gene, 33281 ncRNA 100417985 Gm18935 - - 9|9 F3 family with sequence similarity 64, member A pseudogene pseudo 12986 Mm.271701 NM_007782 ENSMUSG00000028859 Csf3r Cd114|Csfgr|G-CSF-R|G-CSFR - 4 D2.2|4 59.77 cM colony stimulating factor 3 receptor (granulocyte) protein-coding 105247244 Mm.48841 XR_881914 Gm26891 - - 7 A3|7 predicted gene, 26891 ncRNA 73787 Mm.398926 4833406L22Rik - - 4|4 RIKEN cDNA 4833406L22 gene protein-coding 399636 Mm.436937 9530001J02Rik - - - RIKEN cDNA 9530001J02 gene protein-coding 668820 Gm9381 EG668820 - 3|3 G1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 74327 Mm.482972 2900046B09Rik - - 9|9 RIKEN cDNA 2900046B09 gene protein-coding 77398 Mm.174307 NR_131079 ENSMUSG00000113599 9530014B07Rik - - 13|13 B1 RIKEN cDNA 9530014B07 gene ncRNA 245368 Mm.220470 NM_183185 ENSMUSG00000031079 Zfp300 D930016N04Rik - X|X A1.3 zinc finger protein 300 protein-coding 320145 Mm.51682 NM_177082 ENSMUSG00000048562 Sp8 D930049B17Rik|mBtd - 12|12 F2 trans-acting transcription factor 8 protein-coding 319933 Mm.124800 E230024E03Rik - - 8|8 B3.3 RIKEN cDNA E230024E03 gene protein-coding 667380 Gm8601 EG667380 - 10|10 C3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105245800 XR_874759 Gm41191 - - 14 D1|14 predicted gene, 41191 ncRNA 62539 D11Mit179 - - 11 54.6 cM DNA segment, Chr 11, Massachusetts Institute of Technology 179 unknown 108167986 XM_017315303 Gm46339 - - 12 A1.2|12 predicted gene, 46339 protein-coding 53717 D5H4S62 D4S62h - - DNA segment, Chr 5, human D4S62 unknown 100036560 Arrd4 - - - age-related retinal degeneration 4 unknown 100038534 7120482A17Rik - - - RIKEN cDNA 7120482A17 gene other 108021849 LOC108021849 - - - Sox9 enhancer E84 biological-region 73851 4930415H17Rik - - 11|11 D RIKEN cDNA 4930415H17 gene unknown 18458 Mm.371570 NM_008774 ENSMUSG00000022283 Pabpc1 PABP|Pabp1|PabpI|Pabpl1|ePAB - 15|15 B3.1 poly(A) binding protein, cytoplasmic 1 protein-coding 13239 Mm.426634 NM_007851 ENSMUSG00000074439 Defa5 Defa29|Defcr29|Defcr5 - 8|8 A2 defensin, alpha, 5 protein-coding 217845 Mm.298416 NM_145449 ENSMUSG00000021208 Ifi27l2b 1810023F06Rik|ISG12(b2) - 12|12 E interferon, alpha-inducible protein 27 like 2B protein-coding 435727 Gm5708 EG435727 - 3|3 A3 SET translocation pseudogene pseudo 109380 Lbw6 - - 18 50.7 cM lupus NZB x NZW 6 unknown 74180 Mm.200752 NM_028801 ENSMUSG00000066108 Muc5b 2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b - 7 F5|7 87.29 cM mucin 5, subtype B, tracheobronchial protein-coding 100035466 Bw30 Bw24 - - body weight QTL 30 unknown 72795 Mm.489722 NM_028360 ENSMUSG00000042298 Ttc19 2010204O13Rik|2810460C24Rik|AI505442 - 11|11 B2 tetratricopeptide repeat domain 19 protein-coding 70893 Mm.78118 NM_001113323 ENSMUSG00000031966 Glb1l3 4921509F24Rik - 9|9 A4 galactosidase, beta 1 like 3 protein-coding 102632843 Mm.145567 XR_384147 Gm27242 - - 15 D1|15 predicted gene 27242 ncRNA 102639019 Mm.417712 XR_106015 Gm35438 - - 19 C1|19 predicted gene, 35438 ncRNA 100035268 Qbis2 - - - QTL for body weight independent of sex 2 unknown 20762 Mm.10693 NM_011474 ENSMUSG00000046259 Sprr2h AI661967 - 3 F1|3 40.14 cM small proline-rich protein 2H protein-coding 102631709 XR_388868 Gm29979 - - 11 B5|11 predicted gene, 29979 ncRNA 665161 Gm7523 EG665161 - 18|18 A1 NSFL1 (p97) cofactor (p47) pseudogene pseudo 110173 Mm.280536 NM_027288 ENSMUSG00000028164 Manba 2410030O07Rik|B930014J03Rik|Bmn - 3 G3|3 62.65 cM mannosidase, beta A, lysosomal protein-coding 100379612 Gm15886 - - - predicted gene 15886 protein-coding 100036469 Wtlr4 - - - weight loss response 4 unknown 110120455 LOC110120455 - - - VISTA enhancer mm1176 biological-region 17106 lz - - - lizard unknown 102634843 Gm32331 - - 8|8 predicted gene, 32331 ncRNA 209200 Mm.390852 NM_001013371 ENSMUSG00000049502 Dtx3l AU042200|BC023741 - 16|16 B3 deltex 3-like, E3 ubiquitin ligase protein-coding 233075 Gm4883 EG233075 - 7|7 B1 predicted gene 4883 protein-coding 116737 Cocrb4 - - - cocaine related behavior 4 unknown 27843 DXYHgu1 - - XY 74.0 cM DNA segment, Chr XY, Human Genetics Unit 1 unknown 105245030 XR_872910 Gm40541 - - 12 D3|12 predicted gene, 40541 ncRNA 16178 Mm.1349 NM_010555 ENSMUSG00000026073 Il1r2 CD121b|Il1r-2 - 1 B|1 18.65 cM interleukin 1 receptor, type II protein-coding 213649 Mm.134460 NM_172520 ENSMUSG00000028919 Arhgef19 6030432F23|6430573B13Rik|WGEF - 4|4 D3 Rho guanine nucleotide exchange factor (GEF) 19 protein-coding 102466629 NR_105762 ENSMUSG00000098797 Mir6344 Gm27840|mmu-mir-6344 - 1|1 C5 microRNA 6344 ncRNA 74330 Mm.296915 NM_028873 ENSMUSG00000025354 Dnajc14 5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6 - 10|10 D3 DnaJ heat shock protein family (Hsp40) member C14 protein-coding 100416305 Gm15096 - - X|X F3 lysyl-tRNA synthetase pseudogene pseudo 108168511 XM_017318703 ENSMUSG00000093895 LOC108168511 - - Y B X-linked lymphocyte-regulated protein PM1-like protein-coding 102634392 XR_378953 Gm31984 - - 8 B1.1|8 predicted gene, 31984 ncRNA 102467323 n-TIaat6 n-Ti6 - 12 F1|12 nuclear encoded tRNA isoleucine 6 (anticodon AAT) tRNA 56401 Mm.27961 NM_019782 ENSMUSG00000028641 P3h1 2410024C15Rik|Gros1|Lepre1 - 4|4 D2.1 prolyl 3-hydroxylase 1 protein-coding 105246047 XR_875700 Gm41406 - - 15 F3|15 predicted gene, 41406 ncRNA 108580 Iap3rb2 - - - intracisternal A-type particle, U3 region, SINE repeat b-2 other 667655 Gm8747 EG667655 - 3|3 A1 RAB3 GTPase activating protein subunit 1 pseudogene pseudo 625514 Gm6594 EG625514 - 17|17 E3 high mobility group nucleosomal binding domain 2 pseudogene pseudo 74157 Mm.390979 NM_028791 ENSMUSG00000024019 Cmtr1 1300018I05Rik|AI451264|Ftsjd2|MTr1 - 17|17 A3.3 cap methyltransferase 1 protein-coding 60782 D3Mit38 - - 3 66.69 cM DNA segment, Chr 3, Massachusetts Institute of Technology 38 unknown 21829 thd th|ub|unbalanced - - tilted head unknown 109459 Estq1 Est1 - 4 22.38 cM estradiol regulated response QTL 1 unknown 62799 D14Mit224 - - 14 39.15 cM DNA segment, Chr 14, Massachusetts Institute of Technology 224 unknown 102637662 XR_869465 Gm34416 - - 6 F3|6 predicted gene, 34416 ncRNA 320737 Mm.137858 NR_015615 4732416N19Rik - - 6|6 G3 RIKEN cDNA 4732416N19 gene ncRNA 102465963 NR_105803 ENSMUSG00000099128 Mir6382 Gm27319|mmu-mir-6382 - X|X D microRNA 6382 ncRNA 102634697 Mm.404131 XR_001784879 Gm15984 - - 5 C3.3|5 39.53 cM predicted gene 15984 ncRNA 19698 Mm.1741 NM_009046 ENSMUSG00000002983 Relb shep - 7 A3|7 9.93 cM avian reticuloendotheliosis viral (v-rel) oncogene related B protein-coding 100101631 Suprmam1 - - - suppressor of mammary tumors 1 unknown 100035243 Mtxe9 - - - methotrextate efficacy 9 unknown 224019 Mm.246388 NM_177473 ENSMUSG00000055692 Tmem191c 4933405M22Rik|D16Bwg1494e|MNCb-4137 - 16 A3|16 10.71 cM transmembrane protein 191C protein-coding 102634459 XR_387206 LOC102634459 - - 1 C5 uncharacterized LOC102634459 ncRNA 105245192 XR_871782 Gm40679 - - 10 B5.1|10 predicted gene, 40679 ncRNA 62544 D11Mit189 - - 11 27.39 cM DNA segment, Chr 11, Massachusetts Institute of Technology 189 unknown 672381 Gm13690 - - 2|2 C3 SMT3 suppressor of mif two 3 homolog 2 pseudogene pseudo 631359 Rpl21-ps14 EG631359|Gm7062 - 8|8 A1.1 ribosomal protein L21, pseudogene 14 pseudo 100042728 Obox4-ps18 Gm3994 - 7 A2|7 oocyte specific homeobox 4, pseudogene 18 pseudo 102640650 Gm29505 - - Y|Y predicted gene 29505 ncRNA 258945 Mm.377764 NM_146943 ENSMUSG00000111863 Olfr347 MOR136-9 - 2|2 B olfactory receptor 347 protein-coding 404451 Olfr950-ps1 GA_x5J8B7W60AJ-261378-260429 - 9|9 A5.1 olfactory receptor 950, pseudogene 1 pseudo 102635277 XR_390669 Gm32658 - - 4 C3|4 predicted gene, 32658 ncRNA 97618 C87122 - - - expressed sequence C87122 unknown 109161 Mm.207894 NM_180600 ENSMUSG00000032307 Ube2q2 3010021M21Rik - 9|9 B ubiquitin-conjugating enzyme E2Q family member 2 protein-coding 53145 612l16Sp6 - - - DNA segment, 612l16Sp6 unknown 12686 Mm.21806 NM_007703 ENSMUSG00000038754 Elovl3 CIN-2|Cig30 - 19 C3|19 38.75 cM elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 protein-coding 105242620 Gm38784 - - 6|6 predicted gene, 38784 ncRNA 320522 Mm.131585 NM_177182 ENSMUSG00000044243 Bhlha9 A830053O21Rik|Fingerin - 11|11 B5 basic helix-loop-helix family, member a9 protein-coding 494519 Mm.389857 NM_001009952 ENSMUSG00000094305 Scgb2b20 Abpbg20|Abpd|C2c|Scgb2b2 - 7|7 B1 secretoglobin, family 2B, member 20 protein-coding 109093 Mm.22363 NM_181406 ENSMUSG00000028292 Rars2 1500002I10Rik|PRO1992|Rarsl - 4|4 A5 arginyl-tRNA synthetase 2, mitochondrial protein-coding 102639549 XR_374848 ENSMUSG00000045106 Gm38521 - - 2 E2|2 predicted gene, 38521 ncRNA 56613 Mm.20914 NM_019924 ENSMUSG00000024952 Rps6ka4 1110069D02Rik|90kDa|AI848992|Msk2|mMSK2 - 19|19 A ribosomal protein S6 kinase, polypeptide 4 protein-coding 68616 Mm.246881 NM_024228 ENSMUSG00000030703 Gdpd3 1110015E22Rik - 7|7 F3 glycerophosphodiester phosphodiesterase domain containing 3 protein-coding 62823 D13Mit247 - - 13 26.12 cM DNA segment, Chr 13, Massachusetts Institute of Technology 247 unknown 67637 Mm.158163 NM_026287 ENSMUSG00000043583 4930470P17Rik - - 2|2 H3 RIKEN cDNA 4930470P17 gene ncRNA 102636534 XR_382129 Gm33573 - - 13 A3.1|13 predicted gene, 33573 ncRNA 639781 Mm.398873 NM_001102662 ENSMUSG00000089773 Skint1 Skint-1 - 4|4 D1 selection and upkeep of intraepithelial T cells 1 protein-coding 606714 Gm12071 Ppia-ps11_266.1 - 11|11 A3.3 peptidylprolyl isomerase A pseudogene 11_266.1 pseudo 111506 Xmmv77 Xmmv-77 - - xenotropic-MCF leukemia virus 77 other 100041868 Gm3555 - - 1 D|1 serine/threonine kinase 38 like pseudogene pseudo 101544 Mm.20117 NM_001033205 ENSMUSG00000066721 Zfp575 AI326876|Znf575 - 7|7 A3 zinc finger protein 575 protein-coding 102635142 XR_382258 Gm32555 - - 13 A4|13 predicted gene, 32555 ncRNA 112206 Remslp3 - - 16 36.36 cM rapid eye movement sleep 3 unknown 98910 Mm.40673 NM_181399 ENSMUSG00000039046 Usp6nl AI316785|RNTRE|TRE2NL|mKIAA0019 - 2|2 A1 USP6 N-terminal like protein-coding 108168086 XR_001780953 Gm46417 - - 13 B1|13 predicted gene, 46417 ncRNA 69938 Mm.41557 NM_027268 ENSMUSG00000019124 Scrn1 2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193 - 6|6 B3 secernin 1 protein-coding 109294 Mm.123247 NM_029525 ENSMUSG00000048960 Prex2 6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2 - 1|1 A2 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 protein-coding 16277 In(3)15Rk-p In(3)15Rk|In15Rk - - inversion, Chr 3, Roderick 15, proximal other 108168871 XR_001783840 Gm46804 - - 3 C|3 predicted gene, 46804 ncRNA 97943 R75382 - - - expressed sequence R75382 unknown 102466156 NR_105812 ENSMUSG00000099203 Mir6389 Gm27946|mmu-mir-6389 - 7|7 B5 microRNA 6389 ncRNA 414116 Mm.150222 NR_102310 ENSMUSG00000085772 D630024D03Rik - - 11 A4|11 RIKEN cDNA D630024D03 gene ncRNA 100039983 Gm2534 - - 13|13 D1 predicted gene 2534 pseudo 100463519 Mm.361139 NR_038124 BB283400 BF465573|Rncr4 - 6|6 A3.3 expressed sequence BB283400 ncRNA 100124479 NR_030603 ENSMUSG00000077872 Mir878 Mirn878|mir-878|mmu-mir-878 - X A7.1|X microRNA 878 ncRNA 109768 Tcp5 Tcp-5 - - t-complex protein 5 protein-coding 102633149 Mm.235604 XR_384978 9430053O09Rik - - 16|16 C3.1 RIKEN cDNA 9430053O09 gene unknown 16971 Mm.271854 NM_008512 ENSMUSG00000040249 Lrp1 A2mr|AI316852|CD91|Lrp|b2b1554Clo - 10|10 D3 low density lipoprotein receptor-related protein 1 protein-coding 97391 C80915 - - - expressed sequence C80915 protein-coding 100628575 NR_039552 ENSMUSG00000106278 Mir3970 mmu-mir-3970|mu-mir-3970 - 19 C1|19 29.09 cM microRNA 3970 ncRNA 108168235 XR_001781619 LOC108168235 - - 15 D1 uncharacterized LOC108168235 ncRNA 102634 AL022681 - - - expressed sequence AL022681 unknown 102636731 XR_384290 Gm33723 - - 15 E2|15 predicted gene, 33723 ncRNA 100038558 Mm.253345 Gm10752 - - - predicted gene 10752 unknown 100534316 Gm21028 - - 7|7 B3 predicted gene, 21028 pseudo 64930 Mm.224354 NM_022887 ENSMUSG00000026812 Tsc1 - - 2|2 A3 tuberous sclerosis 1 protein-coding 100042907 Gm13811 - - 2|2 E1 ribosomal protein L15 pseudogene pseudo 666018 Gm13038 - - 4|4 E1 predicted gene 13038 pseudo 27722 D1Sta9 - - - DNA segment, Chr 1, Philip Stanier 9 unknown 114536 Bbaa2 Bb2 - 5 60.4 cM B.burgdorferi-associated arthritis 2 unknown 637873 Mm.469899 NM_001105058 ENSMUSG00000090967 Vmn2r61 Casr-rs2|EG637873|Gprc2a-rs2 - 7|7 B3 vomeronasal 2, receptor 61 protein-coding 114615 Mm.50642 NM_053255 ENSMUSG00000036941 Elac1 2610018O07Rik|8430417G19Rik - 18|18 E2 elaC ribonuclease Z 1 protein-coding 623279 Mm.447164 NM_001039173 ENSMUSG00000073514 Dok6 Dok-6 - 18|18 E4 docking protein 6 protein-coding 72198 Mm.291029 NM_028151 ENSMUSG00000016018 Skiv2l2 2610528A15Rik|Mtrex|mKIAA0052 - 13|13 D2.2 superkiller viralicidic activity 2-like 2 (S. cerevisiae) protein-coding 380765 Mm.490476 NR_046013 ENSMUSG00000056359 D830013O20Rik Gm891 - 12|12 C3 RIKEN cDNA D830013O20 gene ncRNA 100462739 Gm19246 - - 7 B3|7 28.25 cM ribosomal protein S27 pseudogene pseudo 102634782 XR_380256 Gm32284 - - 10 B1|10 predicted gene, 32284 ncRNA 14427 Mm.6219 NM_008082 ENSMUSG00000024553 Galr1 Galnr1 - 18 E3|18 55.78 cM galanin receptor 1 protein-coding 668444 Gm9172 EG668444 - 8|8 E2 general transcription factor IIB pseudogene pseudo 102636093 Mm.447872 Gm13571 - - 2|2 34.58 cM predicted gene 13571 ncRNA 109603 Es11 Es-11 - - esterase 11 protein-coding 102635991 Mm.218009 Gm33188 - - 10|10 predicted gene, 33188 ncRNA 235636 Mm.441138 NM_153100 ENSMUSG00000066319 Rtp3 Tmem7 - 9|9 F2 receptor transporter protein 3 protein-coding 100125933 Mm.440263 XR_380326 2310075K07Rik - - 10 B2|10 RIKEN cDNA 2310075K07 gene unknown 319500 Mm.118131 9330168O09Rik - - 16|16 RIKEN cDNA 9330168O09 gene protein-coding 110559 H2-T2 H-2T2 - - histocompatibility 2, T region locus 2 protein-coding 102638321 Gm34913 - - 5|5 predicted gene, 34913 ncRNA 105246904 XM_017321217 Gm42102 - - 5 C3.3|5 predicted gene, 42102 protein-coding 68938 Mm.294020 NM_026877 ENSMUSG00000025142 Aspscr1 1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG - 11|11 E2 alveolar soft part sarcoma chromosome region, candidate 1 (human) protein-coding 100039827 Gm2445 - - 13 D1|13 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 259013 Mm.223400 NM_147011 ENSMUSG00000075200 Olfr1044 MOR185-4 - 2|2 D olfactory receptor 1044 protein-coding 116619 D7Tem23 - - - DNA segment, Chr 7, Tempel 23 unknown 14227 Mm.4234 NM_008020 ENSMUSG00000056629 Fkbp2 mFKBP13|mFKBP2 - 19|19 A FK506 binding protein 2 protein-coding 102633977 XR_386326 Gm31671 - - 18 E2|18 predicted gene, 31671 ncRNA 330351 Mm.445969 BC019510 9530066E14 - 6|6 C1 cDNA sequence BC019510 protein-coding 14168 Mm.7995 NM_010200 ENSMUSG00000031137 Fgf13 Fhf2 - X A6|X 33.31 cM fibroblast growth factor 13 protein-coding 105243474 XR_870968 Gm39388 - - 9 E2-E3.1|9 predicted gene, 39388 ncRNA 13076 Mm.14089 NM_009992 ENSMUSG00000032315 Cyp1a1 AHH|AHRR|CP11|CYPIA1|P450-1 - 9 B|9 31.34 cM cytochrome P450, family 1, subfamily a, polypeptide 1 protein-coding 71443 5530402H23Rik - - 3|3 RIKEN cDNA 5530402H23 gene protein-coding 21950 Mm.41171 NM_009404 ENSMUSG00000035678 Tnfsf9 4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l - 17|17 D tumor necrosis factor (ligand) superfamily, member 9 protein-coding 229096 Mm.23834 NM_172677 ENSMUSG00000047213 Ythdf3 9130022A11Rik - 3|3 A1 YTH domain family 3 protein-coding 23874 Mm.17898 NM_011811 ENSMUSG00000026245 Farsb C76708|Farsa|Farsl|Farslb|Frsb - 1|1 C4 phenylalanyl-tRNA synthetase, beta subunit protein-coding 102643210 XR_865795 Gm38664 - - 1 H4|1 predicted gene, 38664 protein-coding 71134 Mm.370574 NR_040454 ENSMUSG00000101848 4933417E11Rik - - 1|1 C3 RIKEN cDNA 4933417E11 gene ncRNA 100124340 Traj48 Gm16923 - 14|14 C2 T cell receptor alpha joining 48 other 69072 Mm.29906 NM_026932 ENSMUSG00000028729 Ebna1bp2 1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40 - 4|4 D2.1 EBNA1 binding protein 2 protein-coding 108167625 XR_001778928 Gm46092 - - 1 C1.2|1 predicted gene, 46092 ncRNA 102641065 XR_390221 LOC102641065 - - 4 E2 uncharacterized LOC102641065 ncRNA 192161 Mm.308500 NM_138661 ENSMUSG00000103770 Pcdha9 - - 18|18 B2-B3 protocadherin alpha 9 protein-coding 100312568 Vmn1r-ps142 - - 17 A3.2|17 vomeronasal 1 receptor, pseudogene 142 pseudo 70952 Mm.158160 NM_026256 ENSMUSG00000063932 Poteg 4921537P18Rik|4930456F22Rik|Gsarp1|Gsarp2 - 8|8 A2 POTE ankyrin domain family, member G protein-coding 667760 Gm8798 EG667760 - 8|8 D3 carboxylesterase 2 pseudogene pseudo 97533 C79595 - - - expressed sequence C79595 unknown 109939 Prpl3 - - - prion protein ligand 3 protein-coding 109279870 LOC109279870 Mm71 - - VISTA enhancer mm71 biological-region 100503229 Gm19599 - - 12 B3|12 21.78 cM astrocytic phosphoprotein PEA-15-like pseudo 636735 Gm14570 EG636735 - X|X A3.3 predicted gene 14570 protein-coding 105245230 Gm40714 - - 10|10 predicted gene, 40714 ncRNA 100036533 Gm9934 - - - predicted gene 9934 protein-coding 62343 D19Mit82 - - 19 32.27 cM DNA segment, Chr 19, Massachusetts Institute of Technology 82 unknown 102636451 Gm9877 - - 10|10 36.68 cM predicted gene 9877 ncRNA 61020 D6Mit166 - - 6 1.99 cM DNA segment, Chr 6, Massachusetts Institute of Technology 166 unknown 62559 D12Mit114 - - 12 28.94 cM DNA segment, Chr 12, Massachusetts Institute of Technology 114 unknown 27932 D1Nds1 - - 1 56.52 cM DNA segment, Chr 1, Nuffield Department of Surgery 1 unknown 320330 Mm.387180 A730041O05Rik - - 4|4 RIKEN cDNA A730041O05 gene protein-coding 107526 Mm.333048 NM_174990 ENSMUSG00000054435 Gimap4 AU019574|E430007K16Rik|Ian-1|Ian1|Imap4 - 6|6 B2.3 GTPase, IMAP family member 4 protein-coding 492950 Alcrsp4 - - 9 52.24 cM alcohol response 4 unknown 54402 Mm.440064 NM_019442 ENSMUSG00000061207 Stk19 G11|RP1 - 17|17 B1 serine/threonine kinase 19 protein-coding 73312 Mm.396216 NR_126428 1700041A01Rik - - 5|5 E1 RIKEN cDNA 1700041A01 gene ncRNA 100526481 NR_130333 ENSMUSG00000092793 Mir466m mmu-mir-466m - 2 A1|2 8.22 cM microRNA 466m ncRNA 93719 Mm.221324 NM_053111 ENSMUSG00000062148 Ear6 - - 14|14 C1 eosinophil-associated, ribonuclease A family, member 6 protein-coding 68198 Mm.29415 NM_026612 ENSMUSG00000002416 Ndufb2 1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG - 6|6 B1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 protein-coding 102636521 XR_379741 Gm33563 - - 9 E3.3|9 predicted gene, 33563 ncRNA 100124391 Traj12 Gm16659 - 14|14 C2 T cell receptor alpha joining 12 other 50759 Mm.65308 NM_015795 ENSMUSG00000034532 Fbxo16 4932435C24Rik|Fbx16 - 14|14 D1 F-box protein 16 protein-coding 108168958 Gm46860 - - 4 D2.2|4 predicted gene, 46860 pseudo 110593 Mm.332020 NM_001081355 ENSMUSG00000057637 Prdm2 4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1 - 4 E1|4 76.84 cM PR domain containing 2, with ZNF domain protein-coding 100042922 Mm.374311 NM_001111037 ENSMUSG00000100626 H2al1a Gm14483|H2A.L.1|H2AL1|H2al1c|H2al1d|H2al1f|H2al1g|H2al1h|H2al1i - X|X A1.1 H2A histone family member L1A protein-coding 61921 D4Mit306 - - 4 49.41 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 306 unknown 102638289 XR_375057 Gm34889 - - 2 G2|2 predicted gene, 34889 ncRNA 108167424 XR_001778117 Gm45983 - - 7 B3|7 predicted gene, 45983 ncRNA 94213 Mm.114116 NM_053183 ENSMUSG00000020076 Ddx50 4933429B04Rik|8430408E17Rik|GU2|RH-II - 10|10 B4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 protein-coding 105243292 XR_879204 Gm39254 - - 8 E1|8 predicted gene, 39254 ncRNA 100124365 Traj24 Gm16824 - 14|14 C2 T cell receptor alpha joining 24 other 110326 Mm.29232 NM_031867 ENSMUSG00000028950 Tas1r1 Gpr70|T1r1|TR1 - 4 E2|4 82.83 cM taste receptor, type 1, member 1 protein-coding 319163 Mm.377876 NM_175658 ENSMUSG00000060081 Hist1h2aa Th2a - 13|13 A3.1 histone cluster 1, H2aa protein-coding 102632340 XR_383736 Gm30439 - - 14 E4|14 predicted gene, 30439 ncRNA 242506 Mm.221597 NM_172869 ENSMUSG00000049122 Frmd3 4.1O|9430066I12Rik|EPB41L4O|P410 - 4|4 C3 FERM domain containing 3 protein-coding 100038614 Mm.441351 NR_045889 ENSMUSG00000115518 Gm10791 - - 16 C3.3|16 predicted gene 10791 ncRNA 105246387 XR_877267 Gm41681 - - 18 B1|18 predicted gene, 41681 ncRNA 100039893 Gm2477 - - 16|16 C3.3 predicted gene 2477 pseudo 20364 Mm.42829 NM_009156 ENSMUSG00000041571 Selenow Sepw1|selW - 7|7 A2 selenoprotein W protein-coding 108168967 XR_001784347 Gm12648 - - 4 C5|4 43.27 cM predicted gene 12648 ncRNA 51793 Mm.1457 NM_016765 ENSMUSG00000007039 Ddah2 1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30 - 17|17 B1 dimethylarginine dimethylaminohydrolase 2 protein-coding 112390 Eae12 - - 7 22.44 cM experimental allergic encephalomyelitis susceptibility 12 unknown 72745 Mm.295063 NM_175187 ENSMUSG00000035762 Tmem161b 2810446P07Rik|AI843389 - 13|13 C3 transmembrane protein 161B protein-coding 102640051 XR_882328 Gm29647 - - Y C1|Y predicted gene 29647 ncRNA 20526 Mm.18443 NM_031197 ENSMUSG00000027690 Slc2a2 AI266973|Glut-2|Glut2 - 3 A3|3 12.19 cM solute carrier family 2 (facilitated glucose transporter), member 2 protein-coding 102637756 XR_380566 Gm34486 - - 10 B5.3|10 predicted gene, 34486 ncRNA 73907 Mm.483633 4833418N17Rik - - 7|7 D1 RIKEN cDNA 4833418N17 gene unknown 105244808 XM_017321266 Gm40353 - - 5 G3|5 predicted gene, 40353 protein-coding 108167812 XR_001779776 Gm46226 - - 10 B4|10 predicted gene, 46226 ncRNA 74684 Mm.374835 NM_001271586 ENSMUSG00000022543 4930451G09Rik - - 16 A1|16 2.49 cM RIKEN cDNA 4930451G09 gene protein-coding 100503198 Mm.122282 Gm19590 - - 5|5 39.86 cM predicted gene, 19590 ncRNA 192140 Mm.219546 NM_138655 ENSMUSG00000060332 Tmc2 CWEA2 - 2|2 F1 transmembrane channel-like gene family 2 protein-coding 105364 Mm.443795 NR_045086 ENSMUSG00000087334 AW495222 - - 13 C3|13 expressed sequence AW495222 ncRNA 112121 Bglq11 - - 14 44.98 cM body growth late QTL 11 unknown 100500796 Stc7-1 - - - T2R family member protein-coding 71209 Mm.158619 NR_040455 ENSMUSG00000103844 4933436E23Rik - - 1|1 E4 RIKEN cDNA 4933436E23 gene ncRNA 56873 Mm.41572 NM_020295 ENSMUSG00000010721 Lmbr1 1110048D14Rik|AU017641 - 5 B1|5 14.81 cM limb region 1 protein-coding 102636342 XR_390565 Gm33435 - - 4 B2|4 predicted gene, 33435 ncRNA 108167458 XR_001778266 Gm44867 - - 7 F1|7 predicted gene 44867 ncRNA 70911 Mm.19825 NM_178621 ENSMUSG00000037747 Phyhipl 4921522K17Rik|AI267048 - 10|10 B5.3 phytanoyl-CoA hydroxylase interacting protein-like protein-coding 18738 Mm.3128 NM_008850 ENSMUSG00000017781 Pitpna Pitpn|vb|vibrator - 11 B5|11 45.92 cM phosphatidylinositol transfer protein, alpha protein-coding 74622 Mm.311921 NR_033463 4930429F11Rik - - 17|17 E3 RIKEN cDNA 4930429F11 gene ncRNA 27973 Mm.29703 NM_178600 ENSMUSG00000096145 Vkorc1 D7Wsu86e - 7 F3|7 69.81 cM vitamin K epoxide reductase complex, subunit 1 protein-coding 17634 Ms57 MMS57 - - minisatellites detected by probe MMS57 other 216965 Mm.340436 NM_144825 ENSMUSG00000017291 Taok1 2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361 - 11|11 B5 TAO kinase 1 protein-coding 102634551 Gm32104 - - 17|17 predicted gene, 32104 ncRNA 71923 Mm.340257 NM_028005 ENSMUSG00000045176 Borcs6 2310047M10Rik - 11|11 B3 BLOC-1 related complex subunit 6 protein-coding 100034790 Ath17 - - 10 35.26 cM atherosclerosis 17 unknown 97851 C130040J23Rik C76635 - - RIKEN cDNA C130040J23 gene protein-coding 20852 Mm.121721 NM_009284 ENSMUSG00000002147 Stat6 - - 10 D3|10 74.59 cM signal transducer and activator of transcription 6 protein-coding 75400 Mm.45560 NM_001001444 ENSMUSG00000044249 Defb29 0610030I09Rik|BD-29|mBD-29 - 2|2 G3 defensin beta 29 protein-coding 66714 Mm.272748 NM_025722 ENSMUSG00000036934 4921524J17Rik - - 8|8 C3 RIKEN cDNA 4921524J17 gene protein-coding 105246364 XR_877171 Gm41663 - - 18 A1|18 predicted gene, 41663 ncRNA 108369 XmmvY Env-Y|Xmmv-Y - - xenotropic MCF leukemia virus Y other 258479 Mm.377524 NM_146486 ENSMUSG00000068182 Olfr203 MOR182-5 - 16|16 C1.3 olfactory receptor 203 protein-coding 668151 Gm9006 EG668151 - 12|12 F1 predicted gene 9006 pseudo 100042542 Gm12007 - - 11|11 A2 exosome component 1 pseudogene pseudo 71103 Mm.236431 NM_001039095 ENSMUSG00000036401 Glt6d1 4933411C14Rik|GT6m7 - 2|2 A3 glycosyltransferase 6 domain containing 1 protein-coding 61796 D2Mit416 - - - DNA segment, Chr 2, Massachusetts Institute of Technology 416 unknown 23807 Mm.290447 NM_011790 ENSMUSG00000064145 Arih2 AI843547|ARI2|TRIAD1|UIP48 - 9|9 F2 ariadne RBR E3 ubiquitin protein ligase 2 protein-coding 269344 Mm.330522 NM_145973 ENSMUSG00000027246 Ell3 A930015D22Rik - 2|2 E5 elongation factor RNA polymerase II-like 3 protein-coding 241275 Mm.218774 NM_172204 ENSMUSG00000036805 Noxa1 NY-CO-31|SDCCAG31 - 2|2 A3 NADPH oxidase activator 1 protein-coding 77696 6720484G13Rik - - 9|9 RIKEN cDNA 6720484G13 gene protein-coding 54208 Mm.29924 NM_019419 ENSMUSG00000030654 Arl6ip1 AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069 - 7|7 F1 ADP-ribosylation factor-like 6 interacting protein 1 protein-coding 108168201 XR_001781471 Gm46485 - - 14 E5|14 predicted gene, 46485 ncRNA 404256 Mrgprc3-ps MrgC3 - 7|7 B4 MAS-related GPR, member C3, pseudogene pseudo 105246967 Gm42157 - - 5|5 predicted gene, 42157 ncRNA 13544 Mm.247259 NM_007889 ENSMUSG00000003233 Dvl3 b2b2866Clo - 16 A3|16 12.46 cM dishevelled segment polarity protein 3 protein-coding 269470 Mm.24591 NM_175552 ENSMUSG00000033285 Wdr3 AW546279|D030020G18Rik - 3|3 F2.2 WD repeat domain 3 protein-coding 241230 Mm.330004 NM_145838 ENSMUSG00000003418 St8sia6 1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f - 2|2 A1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 62229 D17Mit38 - - 17 45.64 cM DNA segment, Chr 17, Massachusetts Institute of Technology 38 unknown 71037 Mm.19977 NM_001081063 ENSMUSG00000034623 Prss55 4933401F05Rik - 14|14 D1 protease, serine 55 protein-coding 258486 Mm.377529 NM_146493 ENSMUSG00000109835 Olfr730 MOR247-1 - 14|14 C1 olfactory receptor 730 protein-coding 100036742 Fbtq3 - - - femoral bone trait QTL 3 unknown 102465571 NR_105911 ENSMUSG00000098602 Mir6946 Gm27799|mmu-mir-6946 - 14|14 A3 microRNA 6946 ncRNA 257633 Mm.334875 NM_144932 ENSMUSG00000015016 Acsf3 BB101783 - 8|8 E1 acyl-CoA synthetase family member 3 protein-coding 111881 Iap3rc9 - - - intracisternal A-type particle, U3 region, SINE repeat c-9 other 18670 Mm.297825 NM_008830 ENSMUSG00000042476 Abcb4 Mdr2|Pgy-2|Pgy2|mdr-2 - 5 A1|5 3.43 cM ATP-binding cassette, sub-family B (MDR/TAP), member 4 protein-coding 111440 Emv50 Emv-50 - - endogenous ecotropic MuLV 50 other 102636605 Gm33623 - - 18|18 predicted gene, 33623 ncRNA 102633692 Mm.418067 XR_879232 Gm15395 - - 8 E1|8 63.52 cM predicted gene 15395 ncRNA 105242657 Mm.490651 NR_131182 ENSMUSG00000056445 Hoxaas2 2810043O09Rik|5730446D14Rik - 6|6 B3 Hoxa cluster antisense RNA 2 ncRNA 16180 Mm.253424 NM_008364 ENSMUSG00000022514 Il1rap 6430709H04Rik|AI255955|AV239853|IL-1RAcP - 16|16 B2 interleukin 1 receptor accessory protein protein-coding 387152 NR_029548 ENSMUSG00000065426 Mir134 Mirn134|mir-134|mmu-mir-134 - 12 F1|12 microRNA 134 ncRNA 384643 Gm5335 EG384643 - 7 D1|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 625721 Gm6615 EG625721 - 5|5 C1 synaptosomal-associated protein 23 pseudogene pseudo 70886 Mm.399021 NR_045711 ENSMUSG00000098150 4921515E04Rik - - 15|15 A2 RIKEN cDNA 4921515E04 gene ncRNA 61980 D8Mit326 - - 8 74.69 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 326 unknown 102635345 XR_388784 Gm32708 - - 11 B3|11 predicted gene, 32708 ncRNA 211895 Smarce1-ps1 Gm1815 - 8|8 A4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseodogene 1 pseudo 68531 Mm.249695 NR_027929 ENSMUSG00000097047 1110020A21Rik 2600015P10Rik - 17|17 E4 RIKEN cDNA 1110020A21 gene ncRNA 102633189 XR_373900 Gm31078 - - 1 H6|1 predicted gene, 31078 ncRNA 102636241 XR_376015 Gm33363 - - 3 G1|3 predicted gene, 33363 ncRNA 100461 AW743345 AW822013 - - expressed sequence AW743345 protein-coding 100124676 Trbv12-3 Tcrb|Tcrb-V5.3 - 6|6 B1 T cell receptor beta, variable 12-3 pseudo 61967 D8Mit300 - - 8 30.86 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 300 unknown 102636655 XR_388688 Gm33660 - - 11 B1.3|11 predicted gene, 33660 ncRNA 110120416 LOC110120416 - - - VISTA enhancer mm591 biological-region 100042958 Mm.392258 Gm4129 - - 10 D2|10 predicted gene 4129 ncRNA 75280 Mm.108492 NR_131011 ENSMUSG00000085452 4930554G24Rik - - 11|11 A2 RIKEN cDNA 4930554G24 gene ncRNA 62147 D13Mit89 - - 13 20.42 cM DNA segment, Chr 13, Massachusetts Institute of Technology 89 unknown 17364 Mm.38875 NM_018752 ENSMUSG00000030523 Trpm1 4732499L03Rik|AI606771|Ltrpc1|Mlsn1 - 7 C|7 34.61 cM transient receptor potential cation channel, subfamily M, member 1 protein-coding 228765 Mm.32068 NM_145535 ENSMUSG00000027456 Sdcbp2 - - 2|2 G3 syndecan binding protein (syntenin) 2 protein-coding 102631728 Gm29996 - - 10|10 predicted gene, 29996 ncRNA 56419 Mm.440585 NM_019670 ENSMUSG00000022021 Diaph3 4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2 - 14|14 E1 diaphanous related formin 3 protein-coding 15135 Mm.440164 NM_008221 ENSMUSG00000052187 Hbb-y Ey|Hby - 7 E3|7 54.85 cM hemoglobin Y, beta-like embryonic chain protein-coding 17888 Mm.290003 NM_010856 ENSMUSG00000040752 Myh6 A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC|alphaMHC - 14 C2-C3|14 28.01 cM myosin, heavy polypeptide 6, cardiac muscle, alpha protein-coding 100040307 Mm.366309 Gm2703 - - 4 C7|4 predicted gene 2703 protein-coding 19508 Rb(2.17)11Rma Rb11Rma - - Robertsonian translocation, Chr 2 and 17, Universita di Roma 11 other 432817 Gm5456 EG432817 - 14|14 A1 esterase D/formylglutathione hydrolase pseudogene pseudo 100502622 Gm19291 - - 16 C3.1|16 40.27 cM mediator of RNA polymerase II transcription subunit 31-like pseudo 16299 In(6.15)Rb1Ald1Wa - - - inversion of Rb(6.15)1Ald, Wageningen other 100125400 Femwf5 - - - femur work to failure 5 unknown 100417494 Gm18645 - - 8|8 B3.1 methylthioadenosine phosphorylase pseudogene pseudo 102637602 XR_389303 Gm34369 - - 5 C3.3|5 predicted gene, 34369 ncRNA 71071 Mm.380845 NR_045507 ENSMUSG00000113960 4933412O06Rik - - 13|13 A1 RIKEN cDNA 4933412O06 gene ncRNA 102638451 Gm28657 - - Y|Y predicted gene 28657 pseudo 100416210 Gm17969 - - 1|1 A3 centromere protein E pseudogene pseudo 13999 NM_001033123 ENSMUSG00000078889 Gm14288 - - 2|2 H4 predicted gene 14288 protein-coding 108168679 XM_017318906 LOC108168679 - - - protein FAM205A-like protein-coding 72330 Mm.45734 NM_028202 ENSMUSG00000074001 Klhl40 2310024D23Rik|Kbtbd5 - 9|9 F4 kelch-like 40 protein-coding 102633518 Mm.444715 XR_379781 Gm31326 Gm37683 - 9 F1|9 predicted gene, 31326 ncRNA 102637085 XR_376026 Gm33987 - - 3 G1|3 predicted gene, 33987 ncRNA 654469 Mm.395054 NR_155267 Gm17753 - - 15|15 E1 predicted gene, 17753 ncRNA 30925 Mm.486404 NM_030710 ENSMUSG00000015314 Slamf6 KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000 - 1 H3|1 79.54 cM SLAM family member 6 protein-coding 102634368 Gm31967 - - 12|12 predicted gene, 31967 ncRNA 258481 Mm.377526 NM_146488 ENSMUSG00000054940 Olfr137 MOR256-18 - 17|17 B1 olfactory receptor 137 protein-coding 66725 Mm.37558 NM_025730 ENSMUSG00000036273 Lrrk2 4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46 - 15|15 E3 leucine-rich repeat kinase 2 protein-coding 258311 Mm.377431 NM_146314 ENSMUSG00000109951 Olfr601 MOR24-3 - 7|7 E3 olfactory receptor 601 protein-coding 19178 Psmb7-ps1 Psmb7-ps - X C3|X 42.68 cM proteasome (prosome, macropain) subunit, beta type 7, pseudogene 1 pseudo 629859 Ighv1-11 - - 12|12 F2 immunoglobulin heavy variable V1-11 other 105247059 XR_880893 Gm42234 - - 5 B1|5 predicted gene, 42234 ncRNA 359965 DXMgc102 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 102 unknown 58205 Mm.116737 NM_021396 ENSMUSG00000016498 Pdcd1lg2 B7-DC|Btdc|F730015O22Rik|PD-L2 - 19|19 C1 programmed cell death 1 ligand 2 protein-coding 61195 D1Mit119 - - 1 5.0 cM DNA segment, Chr 1, Massachusetts Institute of Technology 119 unknown 26972 Mm.23495 NM_012046 ENSMUSG00000005883 Spo11 AI449549|Spo11a|Spo11b - 2 H3|2 95.64 cM SPO11 meiotic protein covalently bound to DSB protein-coding 100416531 Gm18150 - - 18|18 B2 protocadherin alpha 5 pseudogene pseudo 102467498 n-TCgca28 n-Tc28 - 6 B2.3|6 nuclear encoded tRNA cysteine 28 (anticodon GCA) tRNA 102639775 Gm36006 - - 19 C1|19 protein dpy-30 homolog pseudo 258331 Mm.223025 NM_146334 ENSMUSG00000073768 Olfr1330 MOR259-8 - 4|4 D2.1 olfactory receptor 1330 protein-coding 667262 Mm.480257 NM_001166743 ENSMUSG00000096737 Vmn1r117 EG667262|Gm8544 - 7|7 A3 vomeronasal 1 receptor 117 protein-coding 105243540 Gm39432 - - 11|11 predicted gene, 39432 ncRNA 629372 Hmgb1-ps4 EG629372|Hmg-D - 19 A|19 high mobility group box 1, pseudogene 4 pseudo 619829 Gm6104 EG619829 - 1|1 A1 high mobility group box 3 pseudogene pseudo 77626 Mm.34659 NM_029945 ENSMUSG00000005899 Smpd4 4122402O22Rik - 16|16 A3 sphingomyelin phosphodiesterase 4 protein-coding 111958 Iap5rb10 - - - intracisternal A-type particle, U5 region, SINE repeat b-10 other 109708 Lbt1 Lbt-1 - - lupus band test 1 protein-coding 108077 Mm.18845 NM_021337 ENSMUSG00000040356 Skiv2l 4930534J06Rik|AW214248|Ddx13|SKI|Ski2w - 17|17 B1 superkiller viralicidic activity 2-like (S. cerevisiae) protein-coding 100049162 Mm.410874 BC001981 - - - cDNA sequence BC001981 unknown 77468 C030032O16Rik - - 3|3 RIKEN cDNA C030032O16 gene protein-coding 381310 Mm.44791 NM_001081227 ENSMUSG00000053963 Stum 6330403A02Rik|Gm10001|R75555 - 1|1 H4 mechanosensory transduction mediator protein-coding 21170 T(3;4)5Rk T5Rk - - reciprocal translocation, Chr 3 and 4, Roderick 5 other 102638523 Mm.402973 XR_376167 Gm35066 Gm43742 - 3 H2|3 predicted gene, 35066 ncRNA 102638565 XR_001784315 Gm35099 - - 4 B3|4 predicted gene, 35099 ncRNA 100035374 Hemq5 - - 16 57.06 cM hematocrit QTL 5 unknown 73500 Mm.382824 XR_377078 1700081B01Rik Gm43757 - 5|5 G1.1 RIKEN cDNA 1700081B01 gene ncRNA 102637737 LOC102637737 - - - uncharacterized LOC102637737 ncRNA 110971 Klk1b12-ps 100039713|Gm2385|Klk-ps4|Klk1b12|mGk-12 - 7 B3|7 28.49 cM kallikrein 1-related peptidase b12, pseudogene pseudo 102467588 n-TPtgg2 n-Tp12 - 11 B3|11 nuclear encoded tRNA proline 2 (anticodon TGG) tRNA 102634439 XR_375268 Gm38464 - - 2 H3|2 predicted gene, 38464 ncRNA 208263 Mm.211654 NM_144791 ENSMUSG00000026466 Tor1aip1 LAP1|Lap1B - 1|1 G3 torsin A interacting protein 1 protein-coding 99375 Mm.212861 NM_146207 ENSMUSG00000031446 Cul4a 2810470J21Rik|AW495282 - 8|8 A1.1 cullin 4A protein-coding 245841 Mm.288730 NM_145632 ENSMUSG00000021018 Polr2h - - 16|16 B1 polymerase (RNA) II (DNA directed) polypeptide H protein-coding 62643 D14Mit154 - - 14 30.51 cM DNA segment, Chr 14, Massachusetts Institute of Technology 154 unknown 100035366 Ccmp6 - - - cerebellar cAMP 6 unknown 102637898 Gm34594 - - 15|15 predicted gene, 34594 ncRNA 435580 Gm5691 EG435580 - 18|18 E4 DNA methyltransferase 1-associated protein 1 pseudogene pseudo 109360 Mm.442105 D530018E20Rik - - 6|6 RIKEN cDNA D530018E20 gene protein-coding 105246752 Gm41994 - - 3|3 predicted gene, 41994 protein-coding 100048973 Wtmq8 mQTL14 - - weight module QTL 8 unknown 62641 D14Mit144 - - 14 50.9 cM DNA segment, Chr 14, Massachusetts Institute of Technology 144 unknown 102638935 LOC102638935 - - 10 C1 60S ribosomal protein L27 pseudogene pseudo 114649 Mmtg3 - - 7 9.46 cM modifier of mammary tumor growth 3 unknown 71164 Mm.66995 NM_027704 ENSMUSG00000069189 Zdhhc11 4933421L13Rik|DHHC-11|Zdhhc20 - 13|13 C1 zinc finger, DHHC domain containing 11 protein-coding 21789 Mm.25612 NM_009364 ENSMUSG00000029664 Tfpi2 AV000670|PP5/TFPI-2 - 6 A1|6 1.81 cM tissue factor pathway inhibitor 2 protein-coding 111410 Emv48 Emv-48 - - endogenous ecotropic MuLV 48 other 217835 Mm.24145 NM_177620 ENSMUSG00000044456 Rin3 6430500K07|C86933 - 12|12 E Ras and Rab interactor 3 protein-coding 22318 Mm.28643 NM_009497 ENSMUSG00000020894 Vamp2 Syb-2|Syb2|Vamp-2|sybII - 11|11 B3 vesicle-associated membrane protein 2 protein-coding 16251 In(15)21Rk-d In(15)21Rk|In21Rk - - inversion, Chr 15, Roderick 21, distal other 18202 nt - - - no turning deletion region other 101055702 Gm29713 - - 14 E4|14 predicted gene, 29713 pseudo 381693 Mm.136919 NM_029440 ENSMUSG00000029658 Wdr95 4930434E21Rik - 5|5 G3 WD40 repeat domain 95 protein-coding 387208 NR_029794 ENSMUSG00000065590 Mir212 Mirn212|mir-212|mmu-mir-212 - 11|11 B5 microRNA 212 ncRNA 100038382 Mm.452519 XR_881920 Gm10648 Gm44701 - 7 B1|7 predicted gene 10648 unknown 78667 9530062E16Rik - - X|X RIKEN cDNA 9530062E16 gene protein-coding 73043 Mm.58840 2900064F13Rik - - 5|5 RIKEN cDNA 2900064F13 gene protein-coding 105243841 Gm39580 - - X|X predicted gene, 39580 ncRNA 21360 Targ1 TA-2 - - transforming growth factor alpha regulated gene 1 protein-coding 14190 Mm.292100 NM_008013 ENSMUSG00000039899 Fgl2 AI385601|musfiblp - 5 A3|5 9.83 cM fibrinogen-like protein 2 protein-coding 635960 Ak3l2-ps Ak3l2|Gm13639 - 2|2 C3 adenylate kinase 3-like 2, pseudogene pseudo 20204 Mm.1802 NM_009116 ENSMUSG00000039476 Prrx2 Prx2|S8 - 2 B|2 21.74 cM paired related homeobox 2 protein-coding 100041337 Gm13465 - - 2|2 B predicted gene 13465 protein-coding 12374 Mm.103619 NM_013803 ENSMUSG00000051980 Casr CaR|Gprc2a - 16 B3|16 25.57 cM calcium-sensing receptor protein-coding 105245677 XR_874211 Gm41094 - - 14 A1|14 predicted gene, 41094 ncRNA 105244559 Gm40152 - - 3|3 predicted gene, 40152 ncRNA 320286 A630089K24Rik - - 10|10 RIKEN cDNA A630089K24 gene protein-coding 66931 Mm.67591 NM_025851 ENSMUSG00000023873 1700010I14Rik - - 17|17 A1 RIKEN cDNA 1700010I14 gene protein-coding 12727 Mm.297883 NM_011334 ENSMUSG00000000605 Clcn4 Clc4-2|Clcn4-2|clC-4 - 7 A1|7 4.23 cM chloride channel, voltage-sensitive 4 protein-coding 102636374 XR_379628 Gm33459 - - 9 D|9 predicted gene, 33459 ncRNA 68781 1110055C04Rik - - 11|11 RIKEN cDNA 1110055C04 gene protein-coding 54135 Mm.4067 NM_017405 ENSMUSG00000001247 Lsr ILDR3|Lisch7 - 7|7 B1 lipolysis stimulated lipoprotein receptor protein-coding 100039651 Gm15095 - - X|X F3 predicted gene 15095 pseudo 53805 D17H16S125 D16S125h - - DNA segment, Chr 17, human D16S125 unknown 105246119 Gm41460 - - 16|16 predicted gene, 41460 ncRNA 20555 Mm.10948 NM_011407 ENSMUSG00000078763 Slfn1 AV316259 - 11 C|11 50.3 cM schlafen 1 protein-coding 19649 Mm.212826 NM_011248 ENSMUSG00000032128 Robo3 Rbig1|Rig-1|Rig1|Robo3a|Robo3b - 9|9 A4 roundabout guidance receptor 3 protein-coding 102633946 XR_385765 Gm31645 - - 17 E2|17 predicted gene, 31645 ncRNA 108167744 XR_001779530 Gm46170 - - 1 H2.3|1 predicted gene, 46170 ncRNA 111824 Iapls1-66 - - - intracisternal A particle, lymphocyte specific 1-66 other 108837 Mm.22315 NM_175371 ENSMUSG00000035941 Ibtk 5430411K16Rik|AA409502|BTKI|mKIAA1417 - 9|9 E3.1 inhibitor of Bruton agammaglobulinemia tyrosine kinase protein-coding 100040853 Gm9845 - - 3|3 B CASP8 and FADD-like apoptosis regulator pseudogene pseudo 69063 1810014P07Rik - - 17|17 RIKEN cDNA 1810014P07 gene protein-coding 229706 Mm.212867 NM_172271 ENSMUSG00000027894 Slc6a17 D130012J15Rik|Ntt4 - 3|3 F2.3 solute carrier family 6 (neurotransmitter transporter), member 17 protein-coding 102631594 XR_376613 Gm29891 - - 4 D2.2|4 predicted gene, 29891 ncRNA 102633433 XR_379701 Gm29478 - - 9 E3.2-E3.3|9 predicted gene 29478 ncRNA 102639938 Gm21787 - - Y|Y predicted gene, 21787 protein-coding 56069 Mm.59313 NM_019508 ENSMUSG00000024578 Il17b 1110006O16Rik|1700006N07Rik|Zcyto7 - 18|18 E1 interleukin 17B protein-coding 667090 XR_140462 ENSMUSG00000099471 Gm8451 EG667090 - 1|1 E3 predicted gene 8451 pseudo 100040564 Gm20846 - - Y|Y predicted gene, 20846 protein-coding 102639740 Gm35981 - - 2|2 predicted gene, 35981 ncRNA 114150 Szs12 - - - seizure susceptibility 12 unknown 62386 D14Mit171 - - 14 11.53 cM DNA segment, Chr 14, Massachusetts Institute of Technology 171 unknown 268567 Mm.341747 NM_178745 ENSMUSG00000046157 Tmem229b 6330442E10Rik|9830138K24|AU019070 - 12|12 C3 transmembrane protein 229B protein-coding 105245693 Gm41105 - - 14|14 predicted gene, 41105 ncRNA 217341 Mm.387352 NM_001033267 ENSMUSG00000070331 Qrich2 Gm66 - 11|11 E2 glutamine rich 2 protein-coding 381818 Mm.304161 NM_001004160 Gm5154 EG381818 - 6 G1|6 predicted gene 5154 unknown 56193 Mm.98232 NM_019549 ENSMUSG00000020120 Plek 2010300B13Rik - 11 A2|11 9.41 cM pleckstrin protein-coding 100034865 Aevm2 - - 5 59.57 cM autoimmune extremity vasculitis in MRL mice 2 unknown 68799 Mm.293466 NM_178615 ENSMUSG00000048027 Rgmb 1110059F19Rik|DRAGON - 17|17 A2 repulsive guidance molecule family member B protein-coding 102640833 XM_011243646 Gm36807 - - 10 C1|10 predicted gene, 36807 protein-coding 108168117 n-TIaat11 Trnai-aau|n-Ti11 - 13 A3.1|13 nuclear encoded tRNA isoleucine 11 (anticodon AAT) tRNA 105244363 Gm39986 - - 2|2 predicted gene, 39986 ncRNA 14263 Mm.385180 NM_010232 ENSMUSG00000028088 Fmo5 5033418D19Rik|AI195026 - 3|3 F2.2 flavin containing monooxygenase 5 protein-coding 20536 Mm.5053 NM_009208 ENSMUSG00000006576 Slc4a3 A930038D23Rik|Ae3 - 1 C4|1 39.16 cM solute carrier family 4 (anion exchanger), member 3 protein-coding 109863 Ly18 Ly-18|Ly-m18 - - lymphocyte antigen 18 protein-coding 102635626 Mm.229564 XR_378162 Gm32914 Gm44269 - 6 G3|6 predicted gene, 32914 ncRNA 102465213 NR_105823 ENSMUSG00000098980 Mir6397 Gm28004|mmu-mir-6397 - 4|4 C7 microRNA 6397 ncRNA 97680 T25637 - - - expressed sequence T25637 unknown 15572 Mm.3970 NM_010488 ENSMUSG00000028546 Elavl4 Elav|Hud|PNEM - 4 C7|4 51.42 cM ELAV like RNA binding protein 4 protein-coding 76926 Mm.452062 1700021F13Rik - - 5|5 RIKEN cDNA 1700021F13 gene protein-coding 667472 NM_001167152 ENSMUSG00000094981 Gm8653 EG667472|Vmn1r144 - 7|7 A3 predicted gene 8653 protein-coding 114529 Bglu2 - - 13 59.69 cM blood glucose level 2 unknown 102637995 Gm34671 - - Y|Y tRNA methyltransferase 112 homolog pseudo 105244659 Mm.247605 XR_868022 9130410C08Rik - - 4|4 D1 RIKEN cDNA 9130410C08 gene ncRNA 108168594 XM_017318800 ENSMUSG00000096769 LOC108168594 - - Y C1 X-linked lymphocyte-regulated protein PM1-like protein-coding 23970 Mm.23978 NM_011862 ENSMUSG00000016664 Pacsin2 AI197433 - 15|15 E1 protein kinase C and casein kinase substrate in neurons 2 protein-coding 226591 Mm.21520 NM_145513 ENSMUSG00000040843 Tiprl 1810011K17Rik - 1|1 H2.2 TIP41, TOR signalling pathway regulator-like (S. cerevisiae) protein-coding 213043 Mm.414292 NM_001008419 ENSMUSG00000079554 Aox2 Aoh3|Aox3l1 - 1 C1.3|1 29.0 cM aldehyde oxidase 2 protein-coding 100416332 Gm15570 - - 7|7 A3 ribosomal protein L14 pseudogene pseudo 624284 Gm6491 EG624284 - X|X E1 predicted gene 6491 pseudo 85225 D11Mit242 - - 11 39.47 cM DNA segment, Chr 11, Massachusetts Institute of Technology 242 unknown 100504162 Mm.72752 NM_001193631 ENSMUSG00000052099 Prss51 1700007N14Rik - 14|14 D1 protease, serine 51 protein-coding 66595 Mm.84941 NM_025651 ENSMUSG00000032567 Aste1 1100001A21Rik|AV006403 - 9|9 F1 asteroid homolog 1 protein-coding 62085 D10Mit71 - - 10 60.83 cM DNA segment, Chr 10, Massachusetts Institute of Technology 71 unknown 27905 D16Ium60 - - 16 34.83 cM DNA segment, Chr 16, Indiana University Medical 60 unknown 100417190 Gm14729 - - X|X A7.2 melanoma antigen, family A, 4 pseudogene pseudo 108168992 XR_001784524 Gm46880 - - 4 A1|4 predicted gene, 46880 ncRNA 108168396 XR_001782530 Gm46636 - - 18 E3|18 predicted gene, 46636 ncRNA 111378 Mtv2 Mtv-2 - - mammary tumor virus locus 2 other 102639058 Gm35462 - - 3|3 predicted gene, 35462 ncRNA 21039 T(10;13)199H T199H - - reciprocal translocation, Chr 10 and 13, Harwell 199 other 72368 Mm.644 NM_001145552 ENSMUSG00000002345 Borcs8 2310045N01Rik|Mef2bnb - 8|8 B3.3 BLOC-1 related complex subunit 8 protein-coding 77721 Mm.274601 NM_029963 ENSMUSG00000027374 Mrps5 1620401I16Rik|AI850294 - 2|2 F1 mitochondrial ribosomal protein S5 protein-coding 61058 D5Mit249 - - 5 2.6 cM DNA segment, Chr 5, Massachusetts Institute of Technology 249 unknown 73605 XR_380138 1700124M09Rik - - 10|10 A3 RIKEN cDNA 1700124M09 gene ncRNA 68414 0710001L09Rik - - 16|16 RIKEN cDNA 0710001L09 gene protein-coding 112281 Sluc12 - - 12 62.22 cM susceptibility to lung cancer 12 unknown 110744 Dcsx1 Dcsx3 - - distortion controlling, chromosome X, locus 1 protein-coding 619372 Klra17c Ly49q3 - - killer cell lectin-like receptor, subfamily A, member 17C protein-coding 100861942 Gm21344 - - Y|Y predicted gene, 21344 protein-coding 246709 Mm.38271 NM_153171 ENSMUSG00000051079 Rgs13 - - 1 F|1 62.56 cM regulator of G-protein signaling 13 protein-coding 13088 Mm.218749 NM_009999 ENSMUSG00000030483 Cyp2b10 Cyp2b|Cyp2b20|p16 - 7 A3|7 14.11 cM cytochrome P450, family 2, subfamily b, polypeptide 10 protein-coding 74365 Mm.327654 NM_028894 ENSMUSG00000016239 Lonrf3 4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127 - X|X A3.3 LON peptidase N-terminal domain and ring finger 3 protein-coding 100036229 Hbnr5 Hpnr5 - - Heligmosomoides bakeri nematode resistance 5 unknown 100534385 LOC100534385 - - 5|5 G3 fused in sarcoma pseudogene pseudo 67130 Mm.27570 NM_025987 ENSMUSG00000022450 Ndufa6 14kDa|2700038D15Rik|B230217P19Rik - 15|15 E1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14) protein-coding 102635564 Gm32863 - - 1|1 predicted gene, 32863 protein-coding 73278 Mm.396209 NR_045910 ENSMUSG00000100315 1700031P21Rik - - 12|12 C1 RIKEN cDNA 1700031P21 gene ncRNA 80750 Mm.25117 NM_030563 ENSMUSG00000031652 N4bp1 AI481586|C81621 - 8|8 C3 NEDD4 binding protein 1 protein-coding 100504517 Atxn7l1os1 Gm11052 - 12|12 14.08 cM ataxin 7-like 1, opposite strand 1 protein-coding 258770 Mm.389960 NM_146774 ENSMUSG00000073893 Olfr472 MOR204-5 - 7|7 E3 olfactory receptor 472 protein-coding 105245369 XM_017315285 Gm40835 - - 12 A1.1|12 predicted gene, 40835 protein-coding 108233 Ube2i-ps3 Ubce9-ps3|ubc9-[y]3 - - ubiquitin-conjugating enzyme E2I, pseudogene 3 pseudo 387161 NR_029601 ENSMUSG00000065445 Mir143 Mirn143|mir-143|mmu-mir-143 - 18 E1|18 microRNA 143 ncRNA 102636776 LOC102636776 - - 10 B5.3 putative 60S ribosomal protein L39-like 5 pseudo 108168840 LOC108168840 - - 2 H4 60S ribosomal protein L27a pseudogene pseudo 75322 Mm.108666 NR_126443 ENSMUSG00000085488 4930557F10Rik - - 13|13 A3.1 RIKEN cDNA 4930557F10 gene ncRNA 110539 Ltw3 Ltw-3|Lvtw-3 - - liver 20-30 thousand Mol. Wt. protein 3 protein-coding 102640040 LOC102640040 - - 11 A1 small ubiquitin-related modifier 2 pseudogene pseudo 111243 Mif-ps5 - - - macrophage migration inhibitory factor, pseudogene 5 pseudo 102638688 Gm28604 - - Y|Y predicted gene 28604 protein-coding 102639737 Gm35979 - - 9|9 predicted gene, 35979 ncRNA 105247019 XR_880745 Gm42201 - - 3 A3|3 predicted gene, 42201 ncRNA 100035496 Mofp4 Mof4 - - mesenteric and omental fat pad weight 4 unknown 19457 Rb(10.11)8Bnr Rb8Bnr - - Robertsonian translocation, Chr 10 and 11, Universitat Bonn/Rhein 8 other 108168808 XR_001783524 LOC108168808 - - 2 H1 uncharacterized LOC108168808 ncRNA 104136 H38 H-38 - - histocompatibility 38 protein-coding 78151 Mm.444657 XR_375139 4930404H24Rik - - 2|2 H1 RIKEN cDNA 4930404H24 gene unknown 29824 Del(X)2Brd - - - deletion, Chr X, Bradley 2 other 11928 Mm.193670 NM_144900 ENSMUSG00000033161 Atp1a1 Atpa-1|BC010319 - 3 F2.2|3 44.3 cM ATPase, Na+/K+ transporting, alpha 1 polypeptide protein-coding 13123 Mm.316000 NM_007825 ENSMUSG00000039519 Cyp7b1 AW261589|D3Ertd552e|hct-1 - 3 A1|3 4.98 cM cytochrome P450, family 7, subfamily b, polypeptide 1 protein-coding 111640 Ms6-4 - - - minisatellite-4 detected by probe 33.6 other 19631 Rb(9.12)1Cam Rb1Cam - - Robertsonian translocation, Chr 9 and 12, Wallace, Cambridge 1 other 18746 Mm.326167 NM_011099 ENSMUSG00000032294 Pkm AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2 - 9 B|9 32.03 cM pyruvate kinase, muscle protein-coding 666970 Gm8391 EG666970 - 1|1 C1.1 THO complex 4 pseudogene pseudo 102640141 XR_379674 ENSMUSG00000111769 Gm36278 - - 9 E2|9 predicted gene, 36278 ncRNA 100302594 NR_028275 ENSMUSG00000064791 Snord14e - - 9|9 A5.1 small nucleolar RNA, C/D box 14E snoRNA 73910 Mm.356496 NM_176837 ENSMUSG00000039031 Arhgap18 4833419J07Rik|AI314906|AI843501 - 10|10 A4 Rho GTPase activating protein 18 protein-coding 105245467 XR_873253 Gm40916 - - 13 A3.3|13 predicted gene, 40916 ncRNA 100503823 Mm.474486 NR_046209 Gm16973 - - 14 C3|14 28.39 cM predicted gene, 16973 ncRNA 102639478 XR_386747 Gm35782 - - 19 C3|19 predicted gene, 35782 ncRNA 102632892 XR_379695 Gm30849 - - 9 E3.1|9 predicted gene, 30849 ncRNA 229613 Mm.445135 NM_175469 ENSMUSG00000045327 6330549D23Rik - - 3|3 F2.1 RIKEN cDNA 6330549D23 gene pseudo 61694 D6Mit231 - - 6 1.81 cM DNA segment, Chr 6, Massachusetts Institute of Technology 231 unknown 102636473 XR_384288 Gm33530 - - 15 E2|15 predicted gene, 33530 ncRNA 66119 Mm.89912 NM_025365 ENSMUSG00000033475 Tomm6 1110002E23Rik|AI663970 - 17|17 C translocase of outer mitochondrial membrane 6 protein-coding 102632989 XR_388066 Gm30925 - - 8 E1|8 predicted gene, 30925 ncRNA 27215 Mm.92705 NM_013727 ENSMUSG00000039285 Azi2 AA410145|AZ2 - 9|9 F3 5-azacytidine induced gene 2 protein-coding 15151 Hc2 Cen2 - - heterochromatin, Chr 2 other 76501 Mm.330424 NM_029635 ENSMUSG00000027163 Commd9 1810029F08Rik|AA409293 - 2|2 E2 COMM domain containing 9 protein-coding 66056 Mm.19974 NM_025324 ENSMUSG00000051184 Zfp524 0610012F07Rik|2300009P13Rik|Znf524 - 7|7 A1 zinc finger protein 524 protein-coding 20068 Mm.42767 NM_009092 ENSMUSG00000061787 Rps17 - - 7|7 D3 ribosomal protein S17 protein-coding 105244209 XR_866472 Gm39858 - - 2 C3|2 predicted gene, 39858 ncRNA 102634263 Gm31890 - - 13 A5|13 predicted gene, 31890 pseudo 102633117 Gm31024 - - 7|7 predicted gene, 31024 ncRNA 102633640 Gm31421 - - Y|Y tRNA methyltransferase 112 homolog pseudo 78448 D730044P03Rik - - - RIKEN cDNA D730044P03 gene protein-coding 109200 Mm.442048 A430102J17Rik - - 18|18 RIKEN cDNA A430102J17 gene protein-coding 434083 Mug4-ps EG434083|Mug4 - 6|6 F1 murinoglobulin 4, pseudogene pseudo 60723 D9Mit89 - - 9 14.79 cM DNA segment, Chr 9, Massachusetts Institute of Technology 89 unknown 672098 XR_381226 Gm9548 - - 12|12 A1.1 predicted gene 9548 ncRNA 105242829 XR_869630 Gm38931 - - 6 G3|6 predicted gene, 38931 ncRNA 637749 Mm.483255 NM_001039249 Gm10543 EG637749 - 1 E2.3|1 predicted gene 10543 protein-coding 107829 Mm.28969 NM_172438 ENSMUSG00000034274 Thoc5 1700060C24Rik|A430085L24Rik|Fmip|PK1.3|Sgk2 - 11|11 A1 THO complex 5 protein-coding 100861702 XM_003688812 ENSMUSG00000099762 Gm21149 - - 5 A2|5 predicted gene, 21149 protein-coding 434394 Gm5614 EG434394 - 9|9 A4 ribosomal protein L36 pseudogene pseudo 56018 Mm.28896 NM_019990 ENSMUSG00000030688 Stard10 AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81 - 7|7 E2 START domain containing 10 protein-coding 320880 8030493G06Rik - - 2|2 RIKEN cDNA 8030493G06 gene protein-coding 666802 Gm13500 - - 2|2 C1.1 pyrophosphatase (inorganic) 1 pseudogene pseudo 78908 Mm.257997 NM_207205 ENSMUSG00000042035 Igsf3 1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466 - 3 F2.2|3 44.3 cM immunoglobulin superfamily, member 3 protein-coding 62832 D13Mit213 - - 13 59.69 cM DNA segment, Chr 13, Massachusetts Institute of Technology 213 unknown 68285 Mm.37541 NR_027923 C630043F03Rik AI851307 - 4|4 C3 RIKEN cDNA C630043F03 gene ncRNA 406186 Mm.377948 NM_146984 ENSMUSG00000075063 Olfr142 K20|MOR227-2 - 2|2 E1 olfactory receptor 142 protein-coding 105245688 XR_874378 Gm41101 - - 14 A2-A3|14 predicted gene, 41101 ncRNA 108167378 XM_017318883 ENSMUSG00000101146 LOC108167378 - - Y D X-linked lymphocyte-regulated protein PM1-like protein-coding 329055 Mm.353851 NM_001323065 ENSMUSG00000079342 Lipo1 EG329055|Gm5097 - 19|19 C1 lipase, member O1 protein-coding 240119 Mm.311687 NM_172829 ENSMUSG00000024172 St6gal2 C230064G14Rik|St6galII|mKIAA1877 - 17|17 C beta galactoside alpha 2,6 sialyltransferase 2 protein-coding 18226 Mm.2565 NM_053074 ENSMUSG00000109511 Nup62 D7Ertd649e|Nupc1|p62 - 7 B3|7 28.93 cM nucleoporin 62 protein-coding 76108 Mm.261448 NM_029519 ENSMUSG00000051615 Rap2a 5830461H18Rik - 14 E4|14 64.72 cM RAS related protein 2a protein-coding 110120508 LOC110120508 - - - VISTA enhancer mm1553 biological-region 61465 D6Mit206 - - 6 14.75 cM DNA segment, Chr 6, Massachusetts Institute of Technology 206 unknown 218973 Mm.265615 NM_172598 ENSMUSG00000037572 Wdhd1 A630092E18|AND-1|D630024B06Rik - 14|14 C1 WD repeat and HMG-box DNA binding protein 1 protein-coding 100529074 Mm.371846 NR_037680 ENSMUSG00000070063 Snora33 ACA33|MBI-42 - 10 11.1 cM|10 A4 small nucleolar RNA, H/ACA box 33 snoRNA 102636827 Mm.234889 Gm33789 - - 8|8 predicted gene, 33789 protein-coding 62027 D4Mit1005 D2Mit507 - 4 32.2 cM DNA Segment, Chr 4 Massachusetts Institute of Technology 1005 unknown 382180 Mm.429462 Trav7d-4 Gm13959 - 14 C2|14 T cell receptor alpha variable 7D-4 other 102640568 XR_001782663 Gm36602 - - 19 C3|19 predicted gene, 36602 ncRNA 102634761 XR_001784776 Gm32266 - - 5 A1|5 predicted gene, 32266 ncRNA 72736 Mm.204670 NM_028339 ENSMUSG00000021072 Tmx1 2810425A04Rik|AI465319|Txndc1 - 12|12 C2 thioredoxin-related transmembrane protein 1 protein-coding 723880 NR_030260 ENSMUSG00000072900 Mir540 Mirn540|mir-540|mmu-mir-540 - 12|12 F1 microRNA 540 ncRNA 102633420 XR_879850 Gm12223 - - 11 B1.3|11 32.13 cM predicted gene 12223 protein-coding 20667 Mm.28424 NM_011438 ENSMUSG00000051817 Sox12 2010205A02Rik - 2|2 G3 SRY (sex determining region Y)-box 12 protein-coding 108169061 XM_017321233 Gm46918 - - 5 F|5 predicted gene, 46918 protein-coding 105246539 XR_877744 Gm41813 - - 19 B|19 predicted gene, 41813 ncRNA 102642043 LOC102642043 - - - protein BUD31 homolog protein-coding 105243002 Gm39052 - - 7|7 predicted gene, 39052 ncRNA 111799 Iapls3-22 - - 4|4 intracisternal A particle, lymphocyte specific 3-22 other 71583 Mm.158733 NM_027834 ENSMUSG00000054951 9130008F23Rik - - 17|17 B2 RIKEN cDNA 9130008F23 gene protein-coding 100417627 LOC100417627 - - X|X A4 immunoglobulin superfamily, member 1 pseudogene pseudo 100036202 Oss1 - - - osteosarcoma suppressor 1 unknown 108268 Eif4a-ps1 - - - eukaryotic translation iniation factor 4A, pseudogene 1 pseudo 100041637 Vmn1r-ps43 Gm3447 - 7|7 A1 vomeronasal 1 receptor, pseudogene 43 pseudo 105245559 XR_873672 Gm41003 - - 13 C1|13 predicted gene, 41003 ncRNA 667465 Gm8648 EG667465 - X|X F4 predicted gene 8648 pseudo 100503060 Gm19531 - - 9|9 42.3 cM predicted gene, 19531 ncRNA 105245923 XR_875171 Gm41303 - - 15 B3.1|15 predicted gene, 41303 ncRNA 108168280 XR_001781888 Gm46547 - - 16 B3|16 predicted gene, 46547 ncRNA 112290 Lorp1 - - - loss of righting due to propofol 1 unknown 102640852 XR_384482 Gm36820 - - 15 F3|15 predicted gene, 36820 ncRNA 77862 Mm.16925 NM_144543 ENSMUSG00000035443 Thyn1 D730042P09Rik|HSPC144|MDS012|MY105|Thy28 - 9|9 A4 thymocyte nuclear protein 1 protein-coding 83558 Mm.134024 NM_031384 ENSMUSG00000009670 Tex11 4930565P14Rik|BB024231|ZIP4H - X|X C3-D testis expressed gene 11 protein-coding 102467299 n-TEctc5 n-Te5 - 1 H3|1 nuclear encoded tRNA glutamic acid 5 (anticodon CTC) tRNA 102632509 Gm30565 - - 8|8 predicted gene, 30565 ncRNA 61109 D2Mit474 - - 2 47.86 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 474 unknown 100035218 Mfiq1 Mfi8q1 - - M16 feed intake QTL 1 unknown 216082 NR_002887 Gm4798 EG216082 - 10 B5.3|10 ets variant gene 5 pseudogene pseudo 623355 Rpl7a-ps9 EG623355|Gm15630 - 7|7 D3 ribosomal protein L7A, pseudogene 9 pseudo 22271 Mm.4610 NM_009477 ENSMUSG00000020407 Upp1 AI325217|UPase|UdRPase|Up|Upp - 11|11 A1 uridine phosphorylase 1 protein-coding 100416144 Gm17939 - - 17|17 A3.1 SET translocation pseudogene pseudo 100416754 Gm18231 - - 3|3 E2 SCAN domain containing 3 pseudogene pseudo 105246651 XR_878338 Gm41909 - - 1 C5|1 predicted gene, 41909 ncRNA 102635058 Gm32490 - - 10|10 predicted gene, 32490 ncRNA 109813 H45 H-45 - - histocompatibility 45 protein-coding 74882 4930461L14Rik - - 18|18 RIKEN cDNA 4930461L14 gene protein-coding 243866 Mm.446370 XM_006540464 ENSMUSG00000085601 Gm4969 9330180I18|EG243866 - 7|7 A3 predicted gene 4969 protein-coding 235044 Mm.277521 NM_144935 ENSMUSG00000040563 Plppr2 Lppr2|PRG-4 - 9|9 A3 phospholipid phosphatase related 2 protein-coding 98059 C77973 - - - expressed sequence C77973 unknown 16432 Mm.4266 NM_008410 ENSMUSG00000022108 Itm2b AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2 - 14 D3|14 38.88 cM integral membrane protein 2B protein-coding 54152 Mm.288159 NM_017470 ENSMUSG00000022420 Dnal4 D15Ertd424e|Dnalc4 - 15 E1|15 37.85 cM dynein, axonemal, light chain 4 protein-coding 20200 Mm.100144 NM_011313 ENSMUSG00000001025 S100a6 2A9|5B10|CALCYCLIN|Cacy|PRA - 3 F1|3 39.35 cM S100 calcium binding protein A6 (calcyclin) protein-coding 246085 Mm.220170 NM_139225 ENSMUSG00000044743 Defb10 BD-10|Defb7 - 8|8 A2 defensin beta 10 protein-coding 226646 Mm.21669 NM_153064 ENSMUSG00000013593 Ndufs2 CI-49kD - 1|1 H3 NADH dehydrogenase (ubiquinone) Fe-S protein 2 protein-coding 328957 Mm.402781 NR_045400 9330117O12Rik 9330117O12 - 18|18 D3 RIKEN cDNA 9330117O12 gene ncRNA 19339 Mm.5083 NM_009001 ENSMUSG00000031840 Rab3a - - 8 B3.3|8 34.15 cM RAB3A, member RAS oncogene family protein-coding 102153 Mm.390046 C230098O21Rik AI836570|AW557042 - - RIKEN cDNA C230098O21 gene protein-coding 68348 Mm.20149 NM_026687 ENSMUSG00000021081 Serpina1f 0610012A11Rik|AI327419|Serpina2|epserin - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 1F protein-coding 723841 NR_029761 ENSMUSG00000070130 Mir328 Mirn328|miR-328|mmu-mir-328 - 8|8 D3 microRNA 328 ncRNA 103338 Mm.281741 AU015740 - - - expressed sequence AU015740 unknown 100416433 Gm18108 - - X|X C3 adenylosuccinate lyase pseudogene pseudo 11921 Mm.57229 NM_007500 ENSMUSG00000073043 Atoh1 Hath1|MATH-1|Math1|bHLHa14 - 6 C1|6 30.03 cM atonal bHLH transcription factor 1 protein-coding 100040951 Vmn2r-ps141 - - Y|Y D vomeronasal 2, receptor, pseudogene 141 pseudo 67488 Mm.71682 NM_026192 ENSMUSG00000023055 Calcoco1 1810009B06Rik|Cocoa|Gcap11|mKIAA1536 - 15 F3|15 calcium binding and coiled coil domain 1 protein-coding 102632060 XR_871930 Gm30233 - - 10 C1|10 predicted gene, 30233 ncRNA 11698 Mm.8437 NM_009664 ENSMUSG00000029288 Ambn - - 5 E1|5 43.63 cM ameloblastin protein-coding 108169050 XR_001784877 LOC108169050 - - 5 C3.3 uncharacterized LOC108169050 ncRNA 61192 D1Mit109 - - 1 74.86 cM DNA segment, Chr 1, Massachusetts Institute of Technology 109 unknown 257787 Gm38406 GA_x5J8B7W62NC-653162-652995 - 2 E1|2 olfactory receptor GA_x5J8B7W62NC-653162-652995 pseudo 665999 Tpt1-ps4 EG665999|Gm7884 - 7|7 A1 tumor protein, translationally-controlled, pseudogene 4 pseudo 77301 9430031J08Rik - - 15|15 RIKEN cDNA 9430031J08 gene protein-coding 631922 Gm7076 EG631922 - X|X A6 predicted pseudogene 7076 protein-coding 723886 NR_029750 ENSMUSG00000065586 Mir96 Mirn96|mir-96|mmu-mir-96 - 6|6 A3.3 microRNA 96 ncRNA 102634776 XR_373657 Gm32279 - - 1 H2.1|1 predicted gene, 32279 ncRNA 108168543 XM_017318732 LOC108168543 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 52268 D5Ertd422e - - 5 19.14 cM DNA segment, Chr 5, ERATO Doi 422, expressed unknown 100040729 Defa-ps10 - - 8 A2|8 defensin, alpha, pseudogene 10 pseudo 22564 Xmv44 Xmv-44 - - xenotropic murine leukemia virus 44 other 66990 Mm.276255 NM_025889 Tmem134 2410001H17Rik|AI463452 - 19|19 A transmembrane protein 134 protein-coding 102638698 XR_383715 Gm35197 - - 14 E2.3|14 predicted gene, 35197 ncRNA 102640837 Gm36811 - - 12|12 predicted gene, 36811 ncRNA 101447 AA409587 - - - expressed sequence AA409587 unknown 100073351 Mm.491276 NM_001098723 ENSMUSG00000091736 Yy2 - - X F4|X Yy2 transcription factor protein-coding 100417659 Gm12804 - - 4|4 D1 microfibrillar-associated protein 1B pseudogene pseudo 27955 D16Nds1 - - 16 36.88 cM DNA segment, Chr 16, Nuffield Department of Surgery 1 unknown 217325 Mm.290450 NM_145438 ENSMUSG00000020782 Llgl2 9130006H11Rik|Llglh2 - 11|11 E2 LLGL2 scribble cell polarity complex component protein-coding 69108 Mm.46108 NR_045473 ENSMUSG00000099825 1810012K16Rik - - 8|8 A2 RIKEN cDNA 1810012K16 gene ncRNA 105243439 XR_870874 Gm39364 - - 9 C|9 predicted gene, 39364 ncRNA 53603 Mm.143716 NM_021367 ENSMUSG00000024379 Tslp - - 18 B1|18 18.12 cM thymic stromal lymphopoietin protein-coding 70874 Mm.427286 NR_038000 ENSMUSG00000044544 4921513I03Rik - - 10|10 D2 RIKEN cDNA 4921513I03 gene ncRNA 102634075 Mm.78553 XR_377770 ENSMUSG00000107441 Gm31747 - - 6 C1|6 predicted gene, 31747 ncRNA 666360 Gm8062 EG666360 - 13|13 C1 predicted pseudogene 8062 protein-coding 116848 Mm.252213 NM_054078 ENSMUSG00000040054 Baz2a AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314 - 10|10 D3 bromodomain adjacent to zinc finger domain, 2A protein-coding 111806 Iapls3-29 - - - intracisternal A particle, lymphocyte specific 3-29 other 21008 T(1;14)1Po T1Po - - reciprocal translocation, Chr 1 and 14, Popko 1 other 105246317 Gm41619 - - 17|17 predicted gene, 41619 ncRNA 100042110 XM_006542462 ENSMUSG00000099782 Gm20903 - - Y|Y D predicted gene, 20903 protein-coding 384148 Dnd1-ps EG384148|Gm5289 - 5|5 A1 DND microRNA-mediated repression inhibitor 1, pseudogene pseudo 780824 Ighv12-2 - - 12|12 F1 immunoglobulin heavy variable V12-2 pseudo 259123 Mm.377861 NM_147119 ENSMUSG00000073938 Olfr632 MOR2-1 - 7|7 E3 olfactory receptor 632 protein-coding 14381 Mm.27210 NM_008062 ENSMUSG00000031400 G6pdx G28A|G6pd|Gpdx - X A7.3|X 38.0 cM glucose-6-phosphate dehydrogenase X-linked protein-coding 382508 Gm12136 - - 11 A5|11 eukaryotic translation initiation factor 4A1 pseudogene pseudo 93961 Mm.154783 NM_033149 ENSMUSG00000074892 B3galt5 1190002B21Rik|AU045265|b3Galt-V - 16|16 C4 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 protein-coding 62166 D14Mit64 - - 14 28.19 cM DNA segment, Chr 14, Massachusetts Institute of Technology 64 unknown 433742 Gm12722 - - 4|4 C6 predicted gene 12722 pseudo 107937 Idd9.3 - - - insulin dependent diabetes susceptibility 9.3 protein-coding 20411 Mm.210815 NM_009166 ENSMUSG00000025006 Sorbs1 2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296 - 19 C3|19 34.25 cM sorbin and SH3 domain containing 1 protein-coding 257956 Mm.377314 NM_001011787 ENSMUSG00000094747 Olfr1307 MOR245-19P - 2|2 E3 olfactory receptor 1307 protein-coding 320301 Mm.373883 NR_033503 E530011L22Rik - - 9|9 F4 RIKEN cDNA E530011L22 gene ncRNA 83996 Mm.379271 NM_032007 ENSMUSG00000041620 Mmp1b MMP-1b|Mcol-B|Mcolb - 9|9 A1 matrix metallopeptidase 1b (interstitial collagenase) protein-coding 76975 Mm.163766 2900057H02Rik - - - RIKEN cDNA 2900057H02 gene protein-coding 52108 Mm.436929 D9Ertd115e - - - DNA segment, Chr 9, ERATO Doi 115, expressed unknown 94315 Mm.35089 NM_033573 ENSMUSG00000004895 Prcc - - 3|3 F1 papillary renal cell carcinoma (translocation-associated) protein-coding 22418 Mm.287544 NM_009524 ENSMUSG00000021994 Wnt5a 8030457G12Rik|Wnt-5a - 14 A3|14 16.8 cM wingless-type MMTV integration site family, member 5A protein-coding 19716 Mm.422943 NM_009052 ENSMUSG00000050071 Bex1 AA407839|AU018692|Bex4|Rex3 - X F1|X 57.4 cM brain expressed X-linked 1 protein-coding 11496 Mm.275895 NM_001007220 ENSMUSG00000040537 Adam22 2900022I03Rik|AI854032|MDC2 - 5 A1|5 3.39 cM a disintegrin and metallopeptidase domain 22 protein-coding 20437 Mm.324553 NM_009172 ENSMUSG00000036840 Siah1a AA982064|AI853500|Sinh1a - 8 C3|8 42.1 cM siah E3 ubiquitin protein ligase 1A protein-coding 433464 Gm13991 - - 2|2 E5 RAB5B, member RAS oncogene family pseudogene pseudo 19201 Mm.57174 NM_013831 ENSMUSG00000025429 Pstpip2 MAYP|cmo - 18 E3|18 52.38 cM proline-serine-threonine phosphatase-interacting protein 2 protein-coding 105244454 XR_867327 Gm40060 - - 3 D|3 predicted gene, 40060 ncRNA 110670 Yb1d - - - YB-1 DNA binding protein related sequence d protein-coding 102632383 XM_017314906 LOC102632383 - - 11 E2 zinc finger protein 431-like protein-coding 60793 D3Mit65 - - 3 21.75 cM DNA segment, Chr 3, Massachusetts Institute of Technology 65 unknown 100043456 Mm.14309 NM_001270429 ENSMUSG00000095388 Gm10681 - - 3 F2.2|3 predicted gene 10681 protein-coding 52700 Mm.27670 NM_026559 ENSMUSG00000020803 Txndc17 4831443O22Rik|D11Ertd672e|TRP14|Txnl5 - 11 B4|11 43.92 cM thioredoxin domain containing 17 protein-coding 100418457 Gm11871 - - 4|4 A3 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 pseudogene pseudo 100418139 Gm19027 - - 1|1 C4 eukaryotic translation elongation factor 1 alpha 2 pseudogene pseudo 102640057 XR_382630 Gm36216 - - 13 C1|13 predicted gene, 36216 ncRNA 492995 Lvic3 - - - liver iron content 3 unknown 94179 Mm.290657 NM_033373 ENSMUSG00000006777 Krt23 CK23|Haik1|K23|Krt1-23 - 11|11 D keratin 23 protein-coding 100861741 Gm21178 - - 15 F3|15 predicted gene, 21178 pseudo 59042 Mm.28668 NM_021538 ENSMUSG00000055681 Cope 1110005D17Rik|Cope1 - 8|8 B3.3 coatomer protein complex, subunit epsilon protein-coding 102633660 XR_384987 Gm31431 - - 16 C3.1|16 predicted gene, 31431 ncRNA 624219 Mm.440264 NM_001080940 ENSMUSG00000047822 Angptl8 EG624219|Gm6484|Rifl - 9|9 A3 angiopoietin-like 8 protein-coding 13270 Del(13)81H - - - deletion, Chr 13, Harwell 81 other 102636484 XR_881095 Gm33539 - - 4 A1|4 predicted gene, 33539 ncRNA 620858 Mm.210572 NR_045340 ENSMUSG00000085484 Gm13539 - - 2|2 A3 predicted gene 13539 ncRNA 21343 Mm.248517 NM_009315 ENSMUSG00000036980 Taf6 80kDa|AW549759|TAF(II)80|TAFII70|Taf2e|p80 - 5|5 G2 TATA-box binding protein associated factor 6 protein-coding 100034823 Cfbw1 - - 1 70.14 cM cystic fibrosis body weight 1 unknown 74974 Mm.91728 4930502M04Rik - - 3|3 RIKEN cDNA 4930502M04 gene unknown 234678 Mm.27186 NM_145604 ENSMUSG00000031889 D230025D16Rik BC006874|Lin10 - 8|8 D3 RIKEN cDNA D230025D16 gene protein-coding 74086 4933411D12Rik - - 8|8 RIKEN cDNA 4933411D12 gene protein-coding 100418058 Gm18972 - - 10|10 A4 U2 small nuclear RNA auxiliary factor 1-like 4 pseudogene pseudo 102631882 Gm28795 - - Y|Y predicted gene 28795 ncRNA 102633454 Gm31274 - - 5 G2|5 predicted gene, 31274 pseudo 62915 D10Mit187 - - 10 67.86 cM DNA segment, Chr 10, Massachusetts Institute of Technology 187 unknown 623713 Gm15057 EG623713 - X|X F2 predicted gene 15057 protein-coding 100417276 Gm14514 - - X|X A1.2 TatD DNase domain containing 2 pseudogene pseudo 100503368 Gm20599 - - 13 B2-B3|13 32.74 cM predicted gene, 20599 pseudo 270757 Mm.107214 NM_177772 ENSMUSG00000050108 Bpifc 4732454E24|Bpil2 - 10|10 C1 BPI fold containing family C protein-coding 109280115 LOC109280115 Mm1344 - - VISTA enhancer mm1344 biological-region 328329 Mm.202606 NM_175171 ENSMUSG00000034751 Mast4 4930420O11Rik|AI642422|mKIAA0303 - 13|13 D1 microtubule associated serine/threonine kinase family member 4 protein-coding 100035940 Hdlq40 - - - HDL QTL 40 unknown 627939 NM_001101584 Gm6813 EG627939 - 19|19 C3 ribosomal protein L21 pseudogene pseudo 100417152 Gm18425 - - 19|19 C1 predicted gene, 18425 pseudo 62829 D13Mit231 - - 13 40.98 cM DNA segment, Chr 13, Massachusetts Institute of Technology 231 unknown 100416123 Gm14746 - - X|X B SET translocation pseudogene pseudo 665682 Gm7748 EG665682 - 16|16 A2 predicted gene 7748 pseudo 102639590 XR_386749 Gm35867 - - 19 C3|19 predicted gene, 35867 ncRNA 100628629 NR_039581 ENSMUSG00000105913 Mir5121 mir-5121|mmu-mir-5121|mu-mir-5121 - 7 B3|7 29.14 cM microRNA 5121 ncRNA 16627 Mm.24399 NM_016659 ENSMUSG00000079853 Klra1 A1|CH29-493D4.3|Klra22|Ly49a|Ly49o<129>|Ly49v - 6 F3|6 63.44 cM killer cell lectin-like receptor, subfamily A, member 1 protein-coding 74487 Mm.490465 NR_015591 ENSMUSG00000085741 5430405H02Rik 2610307N17Rik - 2|2 H1 RIKEN cDNA 5430405H02 gene ncRNA 100034973 Lskcn2 - - - LSK cell number 2 unknown 100502609 Gm11386 - - 13 A3.3|13 13.91 cM transcription elongation factor B polypeptide 1-like pseudo 105243883 XR_872289 Gm39608 - - 11 A3.1|11 predicted gene, 39608 ncRNA 108349 Emv7 Emv-7 - - endogenous ecotropic MuLV 7 other 60961 D1Mit475 - - 1 1.65 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 475 unknown 666408 Gm8087 EG666408 - 9|9 E1 predicted gene 8087 pseudo 108150746 LOC108150746 - - - Lep proximal promoter region biological-region 68046 Mm.276574 NM_026529 ENSMUSG00000024273 2700062C07Rik AI195775|C87515 - 18|18 A2 RIKEN cDNA 2700062C07 gene protein-coding 240322 Mm.71963 NM_175506 ENSMUSG00000053441 Adamts19 4831407I23Rik|AU015154|D230034E10Rik - 18|18 D3 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19 protein-coding 100035224 Abfw2 - - - abdominal fat weight 2 unknown 18453 Mm.16660 NM_011032 ENSMUSG00000025130 P4hb ERp59|PDI|Pdia1|Thbp - 11 E2|11 84.27 cM prolyl 4-hydroxylase, beta polypeptide protein-coding 665254 Gm7556 EG665254 - 6|6 B1 aldolase A, fructose-bisphosphate pseudogene pseudo 666756 Gm8276 EG666756 - 3 D|3 poly(A) binding protein, cytoplasmic 1 pseudogene pseudo 675824 Gm16394 EG620073 - X|X C3 predicted gene 16394 pseudo 100328574 Mm.485663 Proscos 1700024N20Rik - 8 A3|8 15.91 cM proline synthetase co-transcribed, opposite strand unknown 27627 D11Moh1 - - - DNA segment, Chr 11, KL Mohlke 1 unknown 105245897 XR_875057 Gm41278 - - 15 A2|15 predicted gene, 41278 ncRNA 15967 Mm.377088 NM_010504 ENSMUSG00000070904 Ifna4 Ifa4 - 4 C4|4 42.03 cM interferon alpha 4 protein-coding 105243406 XR_870733 Gm39337 - - 9 A5.3|9 predicted gene, 39337 ncRNA 105242683 Gm38833 - - 6|6 predicted gene, 38833 ncRNA 76789 Mm.38912 NM_175245 ENSMUSG00000033186 Mzt1 2410129H14Rik|AI120158|Mozart1 - 14|14 E2.2 mitotic spindle organizing protein 1 protein-coding 73356 Mm.417845 1700054O05Rik - - 10|10 RIKEN cDNA 1700054O05 gene protein-coding 546295 NR_006883 Rhox3d-ps Rhox3-ps|Rhox3.4|Rhox3c|Rhox3d - X|X A3.3 reproductive homeobox 3D, pseudogene pseudo 14291 Mm.455331 NM_008041 ENSMUSG00000048062 Fpr-rs4 - - 17|17 A3.2 formyl peptide receptor, related sequence 4 protein-coding 436081 Gm5745 EG436081 - 9|9 D ribosomal protein L36 pseudogene pseudo 331487 Mm.438275 NM_001081189 ENSMUSG00000073016 Uprt Gm774 - X|X D uracil phosphoribosyltransferase protein-coding 27608 D17Leh89 - - - DNA segment, Chr 17, Lehrach 89 unknown 328606 Mm.442515 4731420N21 - - 15|15 F1 uncharacterized protein 4731420N21 protein-coding 105245641 XR_873971 Gm41069 - - 13 D2.2|13 predicted gene, 41069 ncRNA 246782 Mm.41651 NM_145427 ENSMUSG00000042709 Atpaf2 ATP12|ATP12p - 11|11 B2 ATP synthase mitochondrial F1 complex assembly factor 2 protein-coding 100034762 Kcal1 - - 18 19.29 cM kilocalorie 1 unknown 330355 Mm.333166 NM_001164669 ENSMUSG00000052861 Dnah6 9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6 - 6 C1|6 32.37 cM dynein, axonemal, heavy chain 6 protein-coding 97833 C86753 - - - expressed sequence C86753 protein-coding 68816 Mm.328928 NM_026845 ENSMUSG00000024007 Ppil1 1110060O10Rik|AI327391|Cypl1 - 17|17 A3.3 peptidylprolyl isomerase (cyclophilin)-like 1 protein-coding 100035046 Dbts1 - - - diabetes 1 unknown 105242570 XR_868693 Gm38744 - - 5 G2|5 predicted gene, 38744 ncRNA 110120469 LOC110120469 - - - VISTA enhancer mm1533 biological-region 102633006 XR_385891 Gm30938 - - 17 E4|17 predicted gene, 30938 ncRNA 109280092 LOC109280092 Mm849 - - VISTA enhancer mm849 biological-region 732523 Gt(pU21)129Imeg Ayu21-129|GtAyu21-129 - - gene trap 129, Institute of Molecular Embryology and Genetics unknown 102635115 XR_377900 Gm32535 - - 6 D3|6 predicted gene, 32535 ncRNA 105243137 XR_870236 Gm39140 - - 8 A2|8 predicted gene, 39140 ncRNA 110070 Tubb-rs - - - tubulin, beta, related sequence protein-coding 723931 NR_029772 ENSMUSG00000065568 Mir344 Mirn344|mir-344-1|mmu-mir-344 - 7 C|7 microRNA 344 ncRNA 22751 Mm.295582 NM_011764 ENSMUSG00000031907 Zfp90 6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954 - 8 D3|8 53.14 cM zinc finger protein 90 protein-coding 13299 Del(19)Tg8052Mm Del(19)TgN8052Mm|Krd - - deletion, Chr 19, transgene elicited, M. Meisler other 68212 Mm.157426 NM_026617 ENSMUSG00000020225 Tmbim4 0610007H07Rik|AU022431 - 10|10 D2 transmembrane BAX inhibitor motif containing 4 protein-coding 77838 A930036M01Rik - - 10|10 RIKEN cDNA A930036M01 gene ncRNA 207704 Mm.323984 NM_153116 ENSMUSG00000040464 Gtpbp10 4930545J22Rik|BC034507 - 5|5 A1 GTP-binding protein 10 (putative) protein-coding 69960 Mm.438578 2810403G07Rik - - 13|13 RIKEN cDNA 2810403G07 gene protein-coding 100125872 Cyp3a58-ps Gm20575 - 5|5 G2 cytochrome P450, family 3, subfamily a, member 58, pseudogene pseudo 105242442 XR_001780658 LOC105242442 - - 12 D2 uncharacterized LOC105242442 ncRNA 75453 Mm.286964 NM_029292 ENSMUSG00000056018 Ccdc7b 1700008F21Rik - 8|8 E2 coiled-coil domain containing 7B protein-coding 102635374 Gm32731 - - 7|7 predicted gene, 32731 ncRNA 328110 Mm.283339 NM_177806 ENSMUSG00000035597 Prpf39 Srcs1 - 12|12 C1 pre-mRNA processing factor 39 protein-coding 320427 Mm.40537 A830021K08Rik - - 14|14 E4 RIKEN cDNA A830021K08 gene protein-coding 434094 Gm5581 EG434094 - 6|6 F3 predicted gene 5581 pseudo 70834 Mm.260737 NM_027569 ENSMUSG00000020859 Spag9 3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1 - 11|11 D sperm associated antigen 9 protein-coding 100035490 Ba3 - - - bone area 3 unknown 108167536 XR_001778580 Gm46042 - - 8 B3.3|8 predicted gene, 46042 ncRNA 57757 Mm.86752 NM_021319 ENSMUSG00000079563 Pglyrp2 C730002N09Rik|PGRP-L|Pglyrpl|tagL - 17|17 B1 peptidoglycan recognition protein 2 protein-coding 23900 Mm.379050 NM_011827 ENSMUSG00000064109 Hcst DAP10|KAP10 - 7 B1|7 17.45 cM hematopoietic cell signal transducer protein-coding 108168920 Gm37361 - - 3 F1|3 thymosin beta-10 pseudogene pseudo 100502588 Gm16545 - - 14|14 22.52 cM predicted gene 16545 pseudo 102638770 XR_001778560 Gm35254 - - 8 B3.1|8 predicted gene, 35254 ncRNA 100342 Mm.204656 NM_175307 ENSMUSG00000046694 Fam46b 4732473B16Rik|AU045678|AU046069 - 4|4 D2.3 family with sequence similarity 46, member B protein-coding 245945 Mm.36863 NM_139065 ENSMUSG00000070780 Rbm47 9530077J19Rik - 5|5 C3.1 RNA binding motif protein 47 protein-coding 319422 NM_176909 D930030K17Rik - - 4|4 A4 RIKEN cDNA D930030K17 gene protein-coding 105245937 XR_875316 Gm41310 - - 15 B3.1|15 predicted gene, 41310 ncRNA 244373 Mm.277699 NM_153592 ENSMUSG00000031483 Erlin2 BC036333|C87251|Spfh2 - 8|8 A2 ER lipid raft associated 2 protein-coding 100034897 Cia5c Cia22 - - collagen induced arthritis QTL 5c unknown 381831 Igkv4-58 Gm1077|kj4 - 6|6 C1 immunoglobulin kappa variable 4-58 other 50490 Mm.31748 NM_015760 ENSMUSG00000030562 Nox4 AI648021 - 7|7 D3 NADPH oxidase 4 protein-coding 102467289 n-TCgca54 n-Tc54 - 11 D|11 nuclear encoded tRNA cysteine 54 (anticodon GCA) tRNA 258609 Mm.377591 NM_146616 ENSMUSG00000055571 Olfr305 MOR219-2 - 7|7 D3 olfactory receptor 305 protein-coding 237403 Mm.40213 NM_001013758 ENSMUSG00000051067 Lingo3 AI851712|LERN2 - 10|10 C1 leucine rich repeat and Ig domain containing 3 protein-coding 230787 Mm.290912 NM_001033308 ENSMUSG00000037731 Themis2 ICB-1 - 4|4 D2.3 thymocyte selection associated family member 2 protein-coding 14657 Mm.215168 NM_010297 ENSMUSG00000018595 Glra4 - - X F1|X 59.1 cM glycine receptor, alpha 4 subunit protein-coding 213480 Trav7-6 Gm13906 - 14 C2|14 T cell receptor alpha variable 7-6 other 74087 Mm.173833 NM_028746 ENSMUSG00000041052 Slc7a13 0610009O04Rik|AGT-1|AGT1|XAT2 - 4|4 A3 solute carrier family 7, (cationic amino acid transporter, y+ system) member 13 protein-coding 21946 Mm.21855 NM_009402 ENSMUSG00000030413 Pglyrp1 PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l - 7|7 A3 peptidoglycan recognition protein 1 protein-coding 102634446 XR_386674 Gm32027 - - 19 C2|19 predicted gene, 32027 ncRNA 74727 Mm.444724 4930517G19Rik - - 6|6 RIKEN cDNA 4930517G19 gene protein-coding 16281 In(4)1Dn-d In(4)1Dn|In1Dn - - inversion, Chr 4, Davisson 1, distal other 606726 Gm6079 EG606726|Ppia-psx_14.1 - X|X A1.1 peptidylprolyl isomerase A pseudogene x_14.1 pseudo 258790 Mm.223219 NM_146794 ENSMUSG00000059112 Olfr1263 MOR234-2 - 2|2 E1 olfactory receptor 1263 protein-coding 57911 Mm.458085 NM_021347 ENSMUSG00000017204 Gsdma BB149167|Gsdm|Gsdm1|Gsdma1|H312E - 11|11 D gasdermin A protein-coding 100416814 Gm18273 - - 17|17 B1 zinc finger protein 870 pseudogene pseudo 266815 Mm.106769 NM_153749 ENSMUSG00000054005 Mill1 5530400I18Rik - 7 A3|7 9.15 cM MHC I like leukocyte 1 protein-coding 102632278 LOC102632278 - - 9 E3.1 transcription elongation factor B polypeptide 1 pseudogene pseudo 102636399 Mm.406315 XR_389484 Gm33474 Gm43419 - 5 E5|5 predicted gene, 33474 ncRNA 60820 D4Mit61 - - - DNA segment, Chr 4, Massachusetts Institute of Technology 61 unknown 102466773 NR_105922 ENSMUSG00000098631 Mir6957 Gm27895|mmu-mir-6957 - 15|15 E1 microRNA 6957 ncRNA 102638886 XR_373803 Gm35341 - - 1 H5|1 predicted gene, 35341 ncRNA 102466988 NR_105896 ENSMUSG00000098613 Mir6931 Gm27303|mmu-mir-6931 - 11|11 E1 microRNA 6931 ncRNA 73631 Mm.48862 NR_045938 ENSMUSG00000099794 1700128A07Rik - - 14|14 E2.3 RIKEN cDNA 1700128A07 gene ncRNA 73336 Mm.200587 NM_148940 ENSMUSG00000032493 Prss44 1700036D21Rik|79H19A|AU043574|AU043597|TESSP-4|Tessp4 - 9 F2|9 60.79 cM protease, serine 44 protein-coding 62925 D10Mit262 - - 10 41.85 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 262 unknown 100217438 NR_028538 Scarna2 MBII-382 - 3 F3|3 small Cajal body-specific RNA 2 ncRNA 19572 Rb(5.15)15Rma Rb15Rma - - Robertsonian translocation, Chr 5 and 15, Universita di Roma 15 other 100417040 Gm18379 - - 19|19 C3 high mobility group box 3 pseudogene pseudo 219094 Mm.37592 NM_027143 ENSMUSG00000047153 Khnyn 6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323 - 14|14 C3 KH and NYN domain containing protein-coding 55993 Mm.272226 NM_031870 ENSMUSG00000005493 Msh4 4930485C04Rik|AV144863|mMsh4 - 3|3 H3 mutS homolog 4 protein-coding 13733 Mm.2254 NM_010130 ENSMUSG00000004730 Adgre1 DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3 - 17 D|17 29.8 cM adhesion G protein-coupled receptor E1 protein-coding 100504523 Gm20266 - - 14|14 22.9 cM predicted gene, 20266 ncRNA 14804 Mm.439651 NM_008167 ENSMUSG00000071424 Grid2 B230104L07Rik|GluD2|GluRdelta2|Lc|Lc|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr - 6 C1|6 29.77 cM glutamate receptor, ionotropic, delta 2 protein-coding 62810 D14Mit193 - - 14 37.26 cM DNA segment, Chr 14, Massachusetts Institute of Technology 193 unknown 100043670 Gm4581 - - 16 B3|16 predicted gene 4581 pseudo 100043735 Gm14028 - - 2|2 F1 predicted gene 14028 pseudo 61487 D7Mit171 - - - DNA segment, Chr 7, Massachusetts Institute of Technology 171 unknown 100861575 Gm13161 - - 4 E1|4 78.49 cM tousled-like kinase 2 pseudogene pseudo 384967 Gm5369 EG384967 - 9|9 E3.3 predicted gene 5369 pseudo 114531 Pgia16 - - - proteoglycan induced arthritis 16 unknown 19535 Rb(4.10)8Tu Rb8Tu - - Robertsonian translocation, Chr 4 and 10, Tubingen 8 other 73068 Mm.277552 NM_028428 ENSMUSG00000039357 Fut11 3110009G03Rik|AI317183 - 14|14 A3 fucosyltransferase 11 protein-coding 62316 D2Mit114 - - 2 100.95 cM DNA segment, Chr 2, Massachusetts Institute of Technology 114 unknown 100035326 Brnvl2 - - - brain volume 2 unknown 100504346 Mm.407493 NM_001193666 ENSMUSG00000073878 Gm13304 - - 4|4 A5 predicted gene 13304 protein-coding 111616 Xmv51 Xmv-51 - - xenotropic murine leukemia virus 51 other 11471 Mm.251434 NM_025271 ENSMUSG00000070980 Actl7b Gm26657|Tact1 - 4 B3|4 31.66 cM actin-like 7b protein-coding 238130 Mm.341423 NM_172803 ENSMUSG00000035954 Dock4 5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716 - 12 B1|12 18.06 cM dedicator of cytokinesis 4 protein-coding 18216 Mm.301712 NM_018766 ENSMUSG00000027568 Ntsr1 NT-1R|NTR-1|NTR1 - 2 H4|2 103.04 cM neurotensin receptor 1 protein-coding 100416878 Gm18298 - - X|X F3 phosphoglycerate mutase 2 pseudogene pseudo 433247 Mm.335660 NM_001039555 ENSMUSG00000074882 Cyp2c68 9030012A22Rik - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 68 protein-coding 17873 Mm.1360 NM_008655 ENSMUSG00000015312 Gadd45b AI323528|Myd118 - 10 C1|10 39.72 cM growth arrest and DNA-damage-inducible 45 beta protein-coding 22336 Vdac3-ps1 - - 13|13 A2 voltage-dependent anion channel 3, pseudogene 1 pseudo 100416316 Gm18034 - - 1|1 C3 ribosomal protein L17 pseudogene pseudo 626231 Mm.381721 Gm6658 EG626231 - 8|8 C5 predicted gene 6658 protein-coding 100041965 Mm.328806 NR_027656 Oaz1-ps Gm1823|Gm9786|Oaz-ps - 17 A3.1|17 ornithine decarboxylase antizyme 1, pseudogene pseudo 105242472 XM_017314877 LOC105242472 - - 11 E1 uncharacterized LOC105242472 protein-coding 68713 Mm.175661 NM_026820 ENSMUSG00000025491 Ifitm1 1110036C17Rik|DSPA2a|Mil-2|Mil2 - 7|7 F5 interferon induced transmembrane protein 1 protein-coding 60982 D17Mit9 - - 17 26.61 cM DNA segment, Chr 17, Massachusetts Institute of Technology 9 unknown 107980439 LOC107980439 - - - Pax3 promoter region biological-region 100503518 Mm.102270 NR_151526 ENSMUSG00000086765 Gm11827 - - 4 A1|4 4.99 cM predicted gene 11827 ncRNA 101055843 XM_003945761 Plin2 - - 4 C4 perilipin 2 protein-coding 18600 Mm.2296 NM_008812 ENSMUSG00000028927 Padi2 Pdi|Pdi2|mKIAA0994 - 4 D3|4 73.01 cM peptidyl arginine deiminase, type II protein-coding 140642 Fembm4 - - 2 59.32 cM femoral bone morphometry 4 unknown 71270 Mm.460830 NR_045446 ENSMUSG00000093617 4933438K21Rik - - 4 E1|4 RIKEN cDNA 4933438K21 gene ncRNA 665947 Gm7860 EG665947 - 16|16 C3.3 ribosomal protein S2 pseudogene pseudo 109599 Om - - - ovum mutant unknown 111174 Mm.377141 NM_053205 ENSMUSG00000056379 Taar1 Tar1|Trar1|taR-1 - 10|10 A4 trace amine-associated receptor 1 protein-coding 102637284 Scgb2b16-ps Abpbg16-ps - 7 B1|7 secretoglobin, family 2B, member 16, pseudogene pseudo 258806 Mm.223233 NM_146810 ENSMUSG00000111448 Olfr912 MOR165-4 - 9|9 A5.1 olfactory receptor 912 protein-coding 112303 Epd1 - - 16 2.59 cM autoimmune epididymitis resistance 1 unknown 257665 Mm.271314 NM_146265 ENSMUSG00000075064 Olfr1506 MOR228-4 - 2|2 E1 olfactory receptor 1506 protein-coding 102635192 Mm.398079 NR_153786 Gm16835 - - 14 E4|14 62.65 cM predicted gene, 16835 ncRNA 75354 Mm.243873 NR_126458 4930554I06Rik - - 19|19 B RIKEN cDNA 4930554I06 gene ncRNA 19075 Mm.2903 NM_008921 ENSMUSG00000025395 Prim1 AI324982 - 10 76.39 cM|10 D3 DNA primase, p49 subunit protein-coding 102634693 XR_873093 Gm32220 - - 12 C1|12 predicted gene, 32220 pseudo 105245498 XR_873386 Gm40946 - - 13 A5|13 predicted gene, 40946 ncRNA 105707 BB055853 - - - expressed sequence BB055853 unknown 243842 Mm.440249 NM_001081418 ENSMUSG00000070808 Bicra Gltscr1 - 7 A2|7 8.67 cM BRD4 interacting chromatin remodeling complex associated protein protein-coding 62666 D15Mit132 - - 15 22.32 cM DNA segment, Chr 15, Massachusetts Institute of Technology 132 unknown 105246765 XR_878695 LOC105246765 - - 5 F uncharacterized LOC105246765 ncRNA 404318 Mm.377938 NM_207557 ENSMUSG00000095248 Olfr681 MOR4014 - 7|7 E3 olfactory receptor 681 protein-coding 70019 Mm.417831 2410039M03Rik - - - RIKEN cDNA 2410039M03 gene protein-coding 100035487 Lbm12 - - - lean body mass 12 unknown 100039659 Gm20810 - - Y|Y predicted gene, 20810 protein-coding 102633593 Mm.386059 XR_375121 AA387200 - - 2 G3|2 74.83 cM expressed sequence AA387200 ncRNA 18181 Mm.259258 NM_010938 ENSMUSG00000058440 Nrf1 C87038|D6Ertd415e - 6 A3.3|6 12.47 cM nuclear respiratory factor 1 protein-coding 67892 Mm.31946 NM_174987 ENSMUSG00000051671 Coa6 1810063B05Rik|AI447995 - 8|8 E2 cytochrome c oxidase assembly factor 6 protein-coding 13980 X83319 ESTM8 - - EST X83319 protein-coding 434227 Gm5599 EG434227 - 7|7 F1 ribosomal protein L7A pseudogene pseudo 320635 Mm.132828 NM_177216 ENSMUSG00000048065 Cyb5r2 D630003K02Rik|b5R.2 - 7|7 E3 cytochrome b5 reductase 2 protein-coding 103164605 Mm.444995 NR_117095 ENSMUSG00000102424 Paupar - - 2 E3|2 Pax6 upstream antisense RNA ncRNA 102634868 Gm32350 - - 1|1 predicted gene, 32350 ncRNA 105244429 XR_867179 Gm40038 Gm42784 - 3 B|3 predicted gene, 40038 ncRNA 100504274 Gm20144 - - 6|6 29.96 cM UPF0197 transmembrane protein C11orf10 homolog pseudo 100862071 Gm21450 - - Y|Y predicted gene, 21450 protein-coding 116757 Drb4 - - - dopamine receptor binding 4 unknown 83961 Mm.443874 NM_032002 ENSMUSG00000032311 Nrg4 AI552600 - 9|9 B neuregulin 4 protein-coding 110379 Mm.29296 NM_024206 ENSMUSG00000030298 Sec13 1110003H02Rik|Sec13l1|Sec13r - 6 E3|6 52.84 cM SEC13 homolog, nuclear pore and COPII coat complex component protein-coding 102637911 XR_385489 Gm34606 - - 17 A3.3|17 predicted gene, 34606 ncRNA 70713 Mm.343793 NM_027518 ENSMUSG00000049092 Gpr137c 6330416L11Rik|Gm908|TM7SF1L2 - 14|14 C1 G protein-coupled receptor 137C protein-coding 61767 D3Mit284 - - 3 45.52 cM DNA segment, Chr 3, Massachusetts Institute of Technology 284 unknown 19109 Mm.1270 NM_011164 ENSMUSG00000021342 Prl AV290867|Gha1|Prl1a1 - 13 A3.1|13 12.25 cM prolactin protein-coding 102639919 XR_870565 Gm36118 - - 9 A3|9 predicted gene, 36118 ncRNA 258009 Olfr990-ps1 MOR203-6P - 2|2 D olfactory receptor 990, pseudogene 1 pseudo 18176 Mm.400954 NM_010937 ENSMUSG00000027852 Nras AV095280|N-ras - 3 F2.2|3 45.25 cM neuroblastoma ras oncogene protein-coding 11951 Mm.258 NM_007506 ENSMUSG00000006057 Atp5g1 - - 11|11 D ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) protein-coding 102640826 XR_386063 Gm36802 - - 18 A1|18 predicted gene, 36802 ncRNA 104029 Cp2 Cp1 - - cleft palate 2 unknown 78610 Mm.323072 NM_178635 ENSMUSG00000035354 Uvrag 9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl - 7|7 E1 UV radiation resistance associated gene protein-coding 100503861 Gm19931 - - 5 F|5 55.59 cM protein LLP homolog pseudo 61115 D2Mit491 - - 2 71.0 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 491 unknown 102639131 XR_383588 Gm35517 - - 14 D3|14 predicted gene, 35517 ncRNA 21204 T(5;12)31H T31H - - reciprocal translocation, Chr 5 and 12, Harwell 31 other 100038524 Mm.490899 Gm10858 - - - predicted gene 10858 unknown 258867 Mm.377727 NM_146867 ENSMUSG00000043312 Olfr131 MOR256-4 - 17|17 B1 olfactory receptor 131 protein-coding 74179 Mm.248931 NR_045457 ENSMUSG00000085333 1700030A11Rik - - 17|17 A3.3 RIKEN cDNA 1700030A11 gene ncRNA 102636267 XR_867527 Gm33381 - - 3 F2.2|3 predicted gene, 33381 ncRNA 109011 1700020M10Rik - - 14|14 D3 RIKEN cDNA 1700020M10 gene unknown 105243624 XR_879823 Gm39480 - - 11 B1.2|11 predicted gene, 39480 ncRNA 17902 Mylf-ps - - 12|12 E myosin light chain, alkali, fast skeletal muscle, pseudogene pseudo 320270 A230058F20Rik - - X|X RIKEN cDNA A230058F20 gene protein-coding 101476 Mm.323554 NM_133942 ENSMUSG00000040268 Plekha1 AA960558|C920009D07Rik|TAPP1 - 7|7 F3 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 protein-coding 16452 Mm.275839 NM_008413 ENSMUSG00000024789 Jak2 Fd17 - 19 C1|19 23.73 cM Janus kinase 2 protein-coding 668190 Rpl26-ps1 EG668190|Gm9032 - 10|10 B2 ribosomal protein L26, pseudogene 1 pseudo 102631813 XR_378077 Gm30055 Gm44406 - 6 G1|6 predicted gene, 30055 ncRNA 61092 D4Mit316 - - 4 2.6 cM DNA segment, Chr 4, Massachusetts Institute of Technology 316 unknown 105243734 XR_001782783 Gm39544 - - X F3|X predicted gene, 39544 ncRNA 105246682 XR_878437 Gm41930 - - 1 E2.1|1 predicted gene, 41930 ncRNA 62963 D13Mit292 - - 13 63.65 cM DNA Segment, Chr 13, Massachusetts Institute of Technology 292 unknown 102633868 XR_380815 Gm31593 - - 10 D2|10 predicted gene, 31593 ncRNA 105243863 Gm39594 - - 1|1 predicted gene, 39594 protein-coding 320114 5930430O07Rik - - 13|13 RIKEN cDNA 5930430O07 gene protein-coding 109280073 LOC109280073 Mm694 - - VISTA enhancer mm694 biological-region 493142 Marif2 - - 8 21.16 cM macrophage-associated risk inflammatory factor 2 unknown 102636420 Gm33488 - - Y|Y predicted gene, 33488 pseudo 110109 Mm.29203 NM_138747 ENSMUSG00000038279 Nop2 120kDa|A530002O17|Nol1 - 6 F2|6 59.32 cM NOP2 nucleolar protein protein-coding 67041 Mm.13445 NM_024188 ENSMUSG00000022186 Oxct1 2610008O03Rik|Oxct|Oxct2a|Scot-s - 15|15 A1 3-oxoacid CoA transferase 1 protein-coding 100038353 Mm.440724 NR_045879 ENSMUSG00000097712 Gm10532 - - 18 E3|18 predicted gene 10532 ncRNA 110871 Cirbp-rs3 Cirp-rs3 - - cold inducible RNA binding protein, related sequence 3 protein-coding 665426 Gm15782 EG665426 - 6 G3|6 predicted gene 15782 pseudo 105245837 XR_874884 Gm41226 - - 14 E2.1|14 predicted gene, 41226 ncRNA 67355 Mm.193728 NR_033788 ENSMUSG00000101505 1700109G14Rik 1700126G13Rik - 14|14 D1 RIKEN cDNA 1700109G14 gene ncRNA 102636225 Gm28410 - - 1|1 predicted gene 28410 ncRNA 108430 Xmmv45 Xmmv-45|Xp-4 - - xenotropic-MCF leukemia virus 45 other 93855 D15Jor1 - - - DNA segment, Chr 15, Barbara Jordan 1 unknown 108168181 XM_017316331 Gm46471 - - 14 D3|14 predicted gene, 46471 protein-coding 100416721 Gm18214 - - 17|17 A3.3 zinc finger protein 40 pseudogene pseudo 61955 D7Mit312 - - 7 31.11 cM DNA Segment, Chr 7, Massachusetts Institute of Technology 312 unknown 12631 Mm.329655 NM_007687 ENSMUSG00000056201 Cfl1 AA959946|Cof - 19|19 A cofilin 1, non-muscle protein-coding 69504 Mm.441438 NM_145563 ENSMUSG00000066613 Zfp932 2310001H12Rik|Znf431 - 5|5 F zinc finger protein 932 protein-coding 665519 Gm7670 EG665519 - 18|18 A1 ribosomal protein 10 pseudogene pseudo 100041934 Gm20893 - - Y|Y predicted gene, 20893 protein-coding 320832 Mm.330924 NM_178792 ENSMUSG00000095788 Sirpb1a 9930027N05Rik|SIRP-beta|Sirpb|Sirpb1 - 3|3 A1 signal-regulatory protein beta 1A protein-coding 70275 Mm.486706 2310061L18Rik - - 1|1 RIKEN cDNA 2310061L18 gene protein-coding 108168886 XR_001783931 Gm46816 - - 3 F2.2|3 predicted gene, 46816 ncRNA 11637 Mm.29460 NM_016895 ENSMUSG00000028792 Ak2 Ak-2|D4Ertd220e - 4 D2.2|4 62.62 cM adenylate kinase 2 protein-coding 28271 D10Jhu56 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 56 unknown 105243962 Mm.447734 XR_865575 Gm39668 - - 1 C5|1 predicted gene, 39668 ncRNA 102639695 XR_375423 Gm35948 - - 2 H4|2 predicted gene, 35948 ncRNA 100417144 Gm11708 - - 11|11 E1 mediator of cell motility 1 pseudogene pseudo 622098 Gm6285 EG622098 - X|X D predicted gene 6285 pseudo 76484 Mm.44442 NM_177261 ENSMUSG00000066129 Kndc1 2410012C07Rik|B830014K08Rik|VKIND|v-KIND|very-kind - 7|7 F4 kinase non-catalytic C-lobe domain (KIND) containing 1 protein-coding 404510 Olfr1401-ps1 GA_x5J8B7W5D7G-2505139-2505348 - 5|5 C3.3 olfactory receptor 1401, pseudogene 1 pseudo 666128 Gm11598 - - 11|11 D transcription elongation factor B (SIII), polypeptide 2 pseudogene pseudo 102633365 XR_386561 Gm31208 - - 19 A|19 predicted gene, 31208 ncRNA 76814 Mm.243771 NR_040743 Scarletltr 2600006L11Rik - 9|9 C Scarletltr, erythroid developmental long intergenic non-protein coding transcript ncRNA 102637298 Gm34146 - - 13|13 predicted gene, 34146 ncRNA 270192 Mm.490252 NM_173781 ENSMUSG00000032549 Rab6b 9630015C03|AI844641|C330006L04Rik|D9Bwg0185e - 9 F1|9 54.88 cM RAB6B, member RAS oncogene family protein-coding 669311 Gm9451 - - 9|9 F1 ribosomal protein L6 pseudogene pseudo 110120407 LOC110120407 - - - VISTA enhancer mm340 biological-region 77119 Mm.367930 NR_040744 ENSMUSG00000098758 7630403G23Rik TH-cre|Tg(Th-cre)1Tmd - 9|9 A4 RIKEN cDNA 7630403G23 gene ncRNA 100038574 Mm.399353 NR_045480 ENSMUSG00000107623 Gm10415 - - 6 F3|6 predicted gene 10415 ncRNA 100040924 Gm13082 - - 4|4 E1 RAB6, member RAS oncogene family pseudogene pseudo 105245477 Gm40926 - - 13|13 predicted gene, 40926 ncRNA 108169122 Gm43772 - - 5 C3.1|5 40S ribosomal protein S25 pseudogene pseudo 667476 Mm.319024 Trav8d-1 Gm13957 - 14 C2|14 T cell receptor alpha variable 8D-1 other 17025 Mm.6988 NM_008525 ENSMUSG00000028393 Alad ALADH|Lv - 4 B3|4 33.17 cM aminolevulinate, delta-, dehydratase protein-coding 102465582 NR_105930 ENSMUSG00000099123 Mir6965 Gm27324|mmu-mir-6965 - 17|17 A3.3 microRNA 6965 ncRNA 140493 Mm.120250 NM_080466 ENSMUSG00000000794 Kcnn3 KCa2.3|SK3|SKCA3 - 3|3 F1 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 protein-coding 75172 Mm.426695 NM_029195 ENSMUSG00000064280 Ccdc146 4930528G09Rik|mKIAA1505 - 5|5 A3 coiled-coil domain containing 146 protein-coding 320290 A830055N07Rik - - 14|14 RIKEN cDNA A830055N07 gene protein-coding 105244390 XR_867064 Gm40009 - - 2 H3|2 predicted gene, 40009 ncRNA 723962 NR_029803 ENSMUSG00000065430 Mir26a-2 Mirn26a-2|mir-26a-2 - 10|10 D3 microRNA 26a-2 ncRNA 627111 Mm.469863 NM_001104541 ENSMUSG00000091350 Vmn2r92 EG627111 - 17|17 A3.2 vomeronasal 2, receptor 92 protein-coding 102636289 Gm33397 - - 11|11 predicted gene, 33397 ncRNA 100416404 Gm18098 - - 4|4 A1 ribosomal protein L23 pseudogene pseudo 105940408 NM_001309847 ENSMUSG00000021139 Gm20498 ARIP2a|Synj2bp-cox16 - 12 D1|12 37.6 cM predicted gene 20498 protein-coding 62191 D15Mit58 - - 15 17.76 cM DNA segment, Chr 15, Massachusetts Institute of Technology 58 unknown 102467465 n-TRacg5 n-Tr5 - 13 A3.1|13 nuclear encoded tRNA arginine 5 (anticodon ACG) tRNA 21212 T(5;15)49Ad T49Ad - - reciprocal translocation, Chr 5 and 15, Adler 49 other 230587 Mm.331757 NM_147221 ENSMUSG00000034762 Glis1 Gli5|Gli6|GliH1 - 4|4 C7 GLIS family zinc finger 1 protein-coding 279572 Mm.336203 NM_205820 ENSMUSG00000033777 Tlr13 AI666735|Gm713 - X|X D toll-like receptor 13 protein-coding 544963 Mm.38878 NM_027711 ENSMUSG00000021676 Iqgap2 4933417J23Rik|A630053O10|AI788777 - 13 D1|13 50.26 cM IQ motif containing GTPase activating protein 2 protein-coding 18984 Mm.3863 NM_008898 ENSMUSG00000005514 Por 4933424M13Rik|CPR|CYPOR|P450R - 5 G2|5 75.34 cM P450 (cytochrome) oxidoreductase protein-coding 210027 Mm.405238 NM_175434 ENSMUSG00000057060 Slc35f3 B230375D17Rik - 8|8 E2 solute carrier family 35, member F3 protein-coding 57394 Mm.143766 NM_020626 ENSMUSG00000015401 Tmem27 0610008J07Rik|NX-17|NX17 - X|X F5 transmembrane protein 27 protein-coding 100035671 Fatpad3 - - - fat pad 3 unknown 100038711 Mm.444629 Gm10309 - - - predicted gene 10309 unknown 102638849 Mm.442194 XR_875942 Gm15764 - - 16 A3|16 11.41 cM predicted gene 15764 ncRNA 21311 T(X;7)18Rl T18Rl - - reciprocal translocation, Chr X and 7, Russell 18 other 100043266 Gm10121 - - 16|16 A2 predicted gene 10121 pseudo 102636940 XR_001779365 Gm28209 - - 1 E2.3|1 predicted gene 28209 ncRNA 102642297 XR_866447 Gm38603 - - 2 C3|2 predicted gene, 38603 ncRNA 628152 Gm6850 EG628152 - 7|7 A1 zinc finger protein 772 pseudogene pseudo 61449 D6Mit132 - - 6 44.78 cM DNA segment, Chr 6, Massachusetts Institute of Technology 132 unknown 723874 NR_030251 ENSMUSG00000070140 Mir483 Mirn483|mir-483|mmu-mir-483 - 7|7 F5 microRNA 483 ncRNA 100417840 Gm18860 - - 8|8 B3.3 CCR4-NOT transcription complex, subunit 8 pseudogene pseudo 243872 Rpl7a-ps8 EG243872|Gm4970 - 7|7 A3 ribosomal protein L7A, pseudogene 8 pseudo 52397 Mm.249474 NM_026856 ENSMUSG00000049606 Zfp644 1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2 - 5 E5|5 51.43 cM zinc finger protein 644 protein-coding 231214 Mm.44434 NM_172274 ENSMUSG00000039765 Cc2d2a 5730509K17Rik|b2b1035Clo - 5|5 B3 coiled-coil and C2 domain containing 2A protein-coding 62321 D4Mit117 - - 4 44.8 cM DNA segment, Chr 4, Massachusetts Institute of Technology 117 unknown 100093664 Trnaa-ugc - - - transfer RNA alanine (anticodon UGC) tRNA 102632997 Gm29214 - - 1|1 predicted gene 29214 pseudo 100039882 Gm2474 - - 3|3 A1 solute carrier family 25, member 37 pseudogene pseudo 73719 Mm.292458 NM_028622 ENSMUSG00000042092 Lce1c 1110014K05Rik - 3|3 F1 late cornified envelope 1C protein-coding 12122 Mm.235081 NM_007544 ENSMUSG00000004446 Bid 2700049M22Rik|AI875481|AU022477 - 6 F1|6 57.02 cM BH3 interacting domain death agonist protein-coding 636173 Vmn2r-ps23 - - 5|5 F vomeronasal 2, receptor, pseudogene 23 pseudo 97998 Mm.295397 NM_145470 ENSMUSG00000022419 Deptor Depdc6 - 15 D1|15 21.96 cM DEP domain containing MTOR-interacting protein protein-coding 26416 Mm.311337 NM_011951 ENSMUSG00000053436 Mapk14 CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha - 17 A3.3|17 14.85 cM mitogen-activated protein kinase 14 protein-coding 102634371 Gm21749 - - Y|Y predicted gene, 21749 protein-coding 246696 Mm.23827 NM_145156 ENSMUSG00000040414 Slc25a28 Mfrn2|Mrs3/4 - 19 C3|19 36.67 cM solute carrier family 25, member 28 protein-coding 85062 D3Mit51 - - - DNA segment, Chr 3, Massachusetts Institute of Technology 51 unknown 72775 Mm.201859 NM_028348 ENSMUSG00000007570 Fance 2810451D06Rik|AI415634|AW209126 - 17|17 A3.3 Fanconi anemia, complementation group E protein-coding 11452 act - - - adult cataract unknown 432665 Rpl21-ps3 EG432665|Gm10084 - 12|12 C1 ribosomal protein L21, pseudogene 3 pseudo 110385 Mm.255180 NM_201607 ENSMUSG00000031842 Pde4c Dpde1|E130301F19Rik|dunce - 8 B3.3|8 34.15 cM phosphodiesterase 4C, cAMP specific protein-coding 11611 Mm.7457 NM_016702 ENSMUSG00000026272 Agxt AGT|Agt1|Agxt1|SPT - 1 D|1 47.0 cM alanine-glyoxylate aminotransferase protein-coding 76073 Mm.259180 NM_029508 ENSMUSG00000024805 Pcgf5 0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127 - 19|19 C2 polycomb group ring finger 5 protein-coding 61682 D6Mit278 - - 6 27.65 cM DNA segment, Chr 6, Massachusetts Institute of Technology 278 unknown 114071 Heal8 - - 13 45.05 cM wound healing/regeneration 8 unknown 100416058 Gm17895 - - 3|3 E2 nucleophosmin 1 pseudogene pseudo 228238 Gm13730 - - 2|2 D 3-phosphoglycerate dehydrogenase pseudogene pseudo 100126768 Mm.471528 NM_001177586 ENSMUSG00000092342 Esp31 Gm20516 - 17 B1|17 19.16 cM exocrine gland secreted peptide 31 protein-coding 20641 Mm.603 NM_009226 ENSMUSG00000002477 Snrpd1 AA407109|AL023031|SMD1 - 18|18 A1 small nuclear ribonucleoprotein D1 protein-coding 16477 Mm.1167 NM_008416 ENSMUSG00000052837 Junb - - 8 C3|8 41.41 cM jun B proto-oncogene protein-coding 102633993 XR_382246 Gm31683 - - 13 A3.3|13 predicted gene, 31683 ncRNA 100503357 Mm.33286 AW060742 - - 7|7 expressed sequence AW060742 unknown 102633437 NR_153820 Chrna1os Gm13705|Gm31264 - 2 43.77 cM|2 C3 cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand ncRNA 110064 Rgv1 Rgv-1 - - resistance to Gross virus 1 protein-coding 24052 Mm.338890 NM_011891 ENSMUSG00000020354 Sgcd 35kDa|delta-SG - 11|11 B1.1 sarcoglycan, delta (dystrophin-associated glycoprotein) protein-coding 547431 Mm.441007 NM_079835 ENSMUSG00000024340 Btnl2 BTL-II|BTLN2|Btl2|Gm315|NG9 - 17 B1|17 17.98 cM butyrophilin-like 2 protein-coding 100035818 Bmch1 - - - bone mechanical trait 1 unknown 632708 Mm.297715 NM_001039116 ENSMUSG00000073027 Dmrtc1b Dmrt8.2|Gm714 - X|X D DMRT-like family C1b protein-coding 97225 C77815 - - - expressed sequence C77815 unknown 62264 D18Mit93 - - 18 12.0 cM DNA segment, Chr 18, Massachusetts Institute of Technology 93 unknown 102639956 Gm36147 - - 15 B1|15 predicted gene, 36147 pseudo 105245913 XR_875137 Gm41293 - - 15 B3.1|15 predicted gene, 41293 ncRNA 61700 D5Mit339 - - 5 67.99 cM DNA segment, Chr 5, Massachusetts Institute of Technology 339 unknown 329123 Mm.207123 NR_151587 ENSMUSG00000102716 Gm5099 EG329123 - 1|1 B predicted gene 5099 ncRNA 105245531 XR_873564 Gm40976 - - 13 B2|13 predicted gene, 40976 ncRNA 66537 Mm.332855 NM_025624 ENSMUSG00000029649 Pomp 2510048O06Rik|Ump1 - 5|5 G3 proteasome maturation protein protein-coding 67417 Mm.45171 NM_026140 ENSMUSG00000030871 Ears2 3230401I01Rik|mKIAA1970 - 7|7 F2 glutamyl-tRNA synthetase 2, mitochondrial protein-coding 102632728 XR_384652 Gm30724 - - 16 A1|16 predicted gene, 30724 ncRNA 629754 Mm.190489 NM_001160414 ENSMUSG00000074594 Wfdc9 - - 2 H3|2 WAP four-disulfide core domain 9 protein-coding 13240 Mm.426552 NM_007852 Defa6 Defcr6 - 8|8 A2 defensin, alpha, 6 protein-coding 102639339 Mm.383447 XR_382816 Gm26559 - - 13 D1|13 predicted gene, 26559 ncRNA 100417675 Mm.372763 NR_045119 ENSMUSG00000041596 Nlrp5-ps Gm18756 - 7|7 A1 NLR family, pyrin domain containing 5, pseudogene pseudo 104923 Mm.291504 NM_134052 ENSMUSG00000020629 Adi1 AL024210|Fe-ARD|MTCBP-1|Ni-ARD - 12|12 A2 acireductone dioxygenase 1 protein-coding 103505 Mm.50261 NR_033565 ENSMUSG00000091526 BB019430 - - 10 B4|10 expressed sequence BB019430 ncRNA 664837 NM_001281527 ENSMUSG00000059645 Gm7361 - - 5|5 B1 predicted gene 7361 protein-coding 67878 Mm.23217 NM_028975 ENSMUSG00000037720 Tmem33 1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83 - 5|5 C3.1 transmembrane protein 33 protein-coding 100526534 NR_037244 ENSMUSG00000093118 Mir3083 mir-3083|mmu-mir-3083 - 17 A3.3|17 13.6 cM microRNA 3083 ncRNA 101250 AU022084 - - - expressed sequence AU022084 unknown 108469 Ms65 MMS65 - - minisatellites detected by probe MMS65 other 109280050 LOC109280050 Mm439 - - VISTA enhancer mm439 biological-region 70113 Mm.247273 NM_001013022 ENSMUSG00000047394 Odf3b 2010001J22Rik - 15|15 E3 outer dense fiber of sperm tails 3B protein-coding 62236 D17Mit56 - - 17 55.42 cM DNA segment, Chr 17, Massachusetts Institute of Technology 56 unknown 17692 Mm.24248 NM_010832 ENSMUSG00000031358 Msl3 AU018931|Msl31|Msl3l1 - X|X F5 MSL complex subunit 3 protein-coding 64103 Mm.46221 NM_022322 ENSMUSG00000031250 Tnmd 1110017I01Rik|Bricd4|ChM1L|TeM - X|X E3 tenomodulin protein-coding 61699 D5Mit341 - - 5 75.85 cM DNA segment, Chr 5, Massachusetts Institute of Technology 341 unknown 102634116 Gm31777 - - 6|6 predicted gene, 31777 ncRNA 19618 Rb(8.17)1Iem Rb1Iem - - Robertsonian translocation, Chr 8 and 17, Inst of Experimental Medicine Leningrad 1 other 102633532 XR_878536 Gm28609 - - 1 E4|1 predicted gene 28609 ncRNA 102635793 XR_382370 Gm33041 - - 13 A5|13 predicted gene, 33041 ncRNA 100213 Mm.235730 NM_199057 ENSMUSG00000035969 Rusc2 AI840675|mKIAA0375 - 4|4 A5 RUN and SH3 domain containing 2 protein-coding 109672 Mm.31018 NM_025797 ENSMUSG00000024646 Cyb5a 0610009N12Rik|Cyb5 - 18 E4|18 57.53 cM cytochrome b5 type A (microsomal) protein-coding 100417531 Gm18669 - - 10|10 B2 coiled-coil domain containing 137 pseudogene pseudo 100035802 Apsic3 - - 10 46.97 cM apomorphine stress induced climbing 3 unknown 242838 Mm.482273 NM_172879 ENSMUSG00000040367 Lrrd1 4932412H11Rik - 5|5 A1 leucine rich repeats and death domain containing 1 protein-coding 108168162 XR_001781259 Gm43305 - - 14 C2|14 predicted gene 43305 protein-coding 100416047 Gm17892 - - 15|15 D1 basonuclin 1 pseudogene pseudo 79205 D6Ack1 - - - DNA segment, Chr 6, Ackerman 1 unknown 217370 Mm.27182 NM_144832 ENSMUSG00000039294 BC017643 - - 11|11 E2 cDNA sequence BC017643 protein-coding 102640466 XR_376210 Gm36521 - - 3 H2|3 predicted gene, 36521 ncRNA 108168989 Gm46877 - - 4 E2|4 predicted gene, 46877 pseudo 72716 Mm.422732 NR_015598 2810047C21Rik1 100042870|2810047C21Rik|AA683836|Gm4082 - 7|7 A1 RIKEN cDNA 2810047C21 gene 1 ncRNA 100504072 Gm20045 - - 1|1 79.33 cM predicted gene, 20045 ncRNA 105244072 XR_865936 Gm39750 - - 2 A1|2 predicted gene, 39750 ncRNA 102465310 NR_105857 ENSMUSG00000098866 Mir6539 Gm27464|mir-6539|mmu-mir-6539 - 14|14 D1 microRNA 6539 ncRNA 102633713 XR_374665 Gm31472 - - 2 C3|2 predicted gene, 31472 ncRNA 105245152 XR_871640 A230054N11Rik - - 10|10 B3 RIKEN cDNA A230054N11 gene ncRNA 77441 9430099M06Rik - - 8|8 RIKEN cDNA 9430099M06 gene protein-coding 278203 NM_001085393 ENSMUSG00000037167 Spaca5 Gm718|Lyze - X|X A1.3 sperm acrosome associated 5 protein-coding 105243994 XR_865690 Gm39689 - - 1 H2.1|1 predicted gene, 39689 ncRNA 102640525 XR_381032 Gm36565 - - 11 A1|11 predicted gene, 36565 ncRNA 102465230 NR_105852 ENSMUSG00000098918 Mir6481 Gm27744|mmu-mir-6481 - 3|3 F2.2 microRNA 6481 ncRNA 171226 Mm.222639 NM_134192 ENSMUSG00000060245 Vmn1r228 V1re3|Vldr1 - 17|17 A3.2 vomeronasal 1 receptor 228 protein-coding 80795 Mm.104491 NM_019979 ENSMUSG00000042682 Selenok 1110001C03Rik|AA673253|HSPC030|Hsp30|Selk - 14|14 A3 selenoprotein K protein-coding 330938 Mm.82598 NM_178118 ENSMUSG00000032064 Dixdc1 4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735 - 9|9 A5.3 DIX domain containing 1 protein-coding 100035029 Axtq3 - - - anxiety QTL 3 unknown 72265 Mm.28765 NM_028173 ENSMUSG00000025935 Tram1 1810049E02Rik|TRAMP - 1|1 A3 translocating chain-associating membrane protein 1 protein-coding 791307 Mm.364384 NR_033550 ENSMUSG00000068680 Gm10248 - - 14 A3|14 predicted gene 10248 ncRNA 71097 4933421A08Rik - - 4|4 RIKEN cDNA 4933421A08 gene protein-coding 100217442 Mm.451113 NR_034045 ENSMUSG00000065259 Snora30 MBI-26 - 7 F3|7 small nucleolar RNA, H/ACA box 30 snoRNA 100504562 Gm20288 - - 13|13 35.55 cM small EDRK-rich factor 2-like pseudo 493088 Pltpq2 - - 10 72.31 cM phospholipid transfer protein activity QTL 2 unknown 108168546 XM_017318736 LOC108168546 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 16588 Mm.35498 NM_025280 ENSMUSG00000037262 Kin Kin17 - 2|2 A1 Kin17 DNA and RNA binding protein protein-coding 13349 Mm.6393 NM_010045 ENSMUSG00000037872 Ackr1 AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD - 1 H3|1 80.33 cM atypical chemokine receptor 1 (Duffy blood group) protein-coding 100217467 Mm.247761 NR_034042 Snora5c MBI-80 - 11 A1|11 small nucleolar RNA, H/ACA box 5C snoRNA 80280 Mm.28297 NM_030248 ENSMUSG00000018669 Cdk5rap3 1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016 - 11|11 D CDK5 regulatory subunit associated protein 3 protein-coding 100039726 Gm11486 - - 4|4 C3 predicted gene 11486 pseudo 69121 Mm.285295 NM_133709 ENSMUSG00000030732 Chrdl2 1810022C01Rik|Chl2 - 7|7 E2 chordin-like 2 protein-coding 17897 Mm.7353 NM_010859 ENSMUSG00000059741 Myl3 MLC1s|MLC1v|Mylc|VLC1 - 9 F2|9 60.69 cM myosin, light polypeptide 3 protein-coding 102638314 Gm12627 - - 11 B2|11 37.81 cM predicted gene 12627 pseudo 62532 D11Mit160 - - 11 60.15 cM DNA segment, Chr 11, Massachusetts Institute of Technology 160 unknown 14969 Mm.22564 NM_010382 ENSMUSG00000060586 H2-Eb1 Eb|H-2Eb|H2Eb|Ia-4|Ia4 - 17 B1|17 17.98 cM histocompatibility 2, class II antigen E beta protein-coding 677512 Sult2a-ps4 Gm15439 - 7|7 A1 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, pseudogene 4 pseudo 319445 F630036E10Rik - - - RIKEN cDNA F630036E10 gene protein-coding 100035914 Mfe5q1 - - - M16 feed efficiency at 5 weeks QTL 1 unknown 13607 Mm.328086 NM_010099 ENSMUSG00000059327 Eda EDA1|Ed1|Eda-A1|Eda-A2|HED|Ta|Tnlg7c|XLHED|tabby - X C3|X 43.59 cM ectodysplasin-A protein-coding 319475 Mm.72124 NM_178761 ENSMUSG00000049755 Zfp672 4930488P06Rik|4930511N19Rik|Znf672 - 11|11 B1.3 zinc finger protein 672 protein-coding 11608 Mm.134863 NM_175086 ENSMUSG00000054988 Agtr1b AT1B|AT2R1B|Agtr-1b|Angtr-1b - 3 A2|3 6.37 cM angiotensin II receptor, type 1b protein-coding 61394 D5Mit142 - - 5 79.96 cM DNA segment, Chr 5, Massachusetts Institute of Technology 142 unknown 751537 NR_030444 ENSMUSG00000105220 Mir497 Mir|Mirn497|mir-497a|mmu-mir-497|mmu-mir-497a - 11 B3|11 microRNA 497 ncRNA 27372 Mm.291456 NM_013766 ENSMUSG00000017922 Prl3c1 Ghd7|PLP-I|PLP-J|Prlpi|Prlpj|decidualin - 13 A3.1|13 12.32 cM prolactin family 3, subfamily c, member 1 protein-coding 192216 Mm.490421 NM_138751 ENSMUSG00000025666 Tmem47 3010015F07Rik|AI115536|BCMP1|Tm4sf10 - X|X B transmembrane protein 47 protein-coding 20350 Mm.12903 NM_011349 ENSMUSG00000034684 Sema3f Sema4|Semak - 9|9 F1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F protein-coding 100049083 Find2 - - - fat induced diabetes 2 unknown 68695 Mm.21171 NM_026812 ENSMUSG00000030532 Hddc3 1110033O09Rik|C86475|MESH1 - 7|7 D2 HD domain containing 3 protein-coding 408028 Mm.393649 NR_033560 ENSMUSG00000074354 Arhgap20os 9230115E21Rik - 9|9 A5.3 Rho GTPase activating protein 20, opposite strand ncRNA 665749 Gm11298 - - 13|13 A3.1 ATP-binding cassette, sub-family F (GCN20), member 2 pseudogene pseudo 102633609 XR_383360 ENSMUSG00000114334 Gm31393 - - 14 B|14 predicted gene, 31393 ncRNA 210573 Mm.329064 NM_001013749 ENSMUSG00000096847 Tmem151b Gm323 - 17|17 B3 transmembrane protein 151B protein-coding 68792 Mm.263553 NM_026838 ENSMUSG00000031253 Srpx2 1110039C07Rik|SRP|SRPUL - X|X E3 sushi-repeat-containing protein, X-linked 2 protein-coding 100502995 Gm19494 - - 19|19 37.98 cM predicted gene, 19494 ncRNA 100503997 Gm20550 - - 2 G3|2 74.76 cM ribosomal protein L41 pseudogene pseudo 100041474 Gm14754 - - X|X B predicted gene 14754 pseudo 17746 TrnW - - - tRNA tRNA 100417174 Gm14704 - - X|X A7.2 melanoma antigen, family A, 4 pseudogene pseudo 102637157 XR_374820 Gm34041 - - 2 E2|2 predicted gene, 34041 ncRNA 319616 Mm.387738 NR_015517 ENSMUSG00000072591 5930412G12Rik - - 5|5 G1.3 RIKEN cDNA 5930412G12 gene ncRNA 62110 D12Mit64 - - 12 21.78 cM DNA segment, Chr 12, Massachusetts Institute of Technology 64 unknown 53708 D12Nyu5 D12-5 - - DNA segment, Chr 12, NYU 5 unknown 667163 Gm12182 - - 11|11 B1.2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 71127 Mm.24118 4933425E08Rik - - 10|10 RIKEN cDNA 4933425E08 gene protein-coding 224552 Mm.469860 NM_001104550 ENSMUSG00000096717 Vmn2r98 EG224552 - 17|17 A3.2 vomeronasal 2, receptor 98 protein-coding 432839 Mm.294643 NM_183209 ENSMUSG00000071531 Gprin2 C130040D06Rik|C230073P13|Gm286|mKIAA0514 - 14|14 B G protein regulated inducer of neurite outgrowth 2 protein-coding 665854 Gm7823 EG665854 - X|X E3 lymphocyte cytosolic protein 1 pseudogene pseudo 58243 Mm.389747 NM_021432 ENSMUSG00000055430 Nap1l5 1110020M21Rik - 6|6 B3 nucleosome assembly protein 1-like 5 protein-coding 100418421 Gm19201 - - 7|7 A1 UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2 pseudogene pseudo 246739 Rends Wbw1 - 2 75.41 cM renal disease susceptibility unknown 654838 Traj2 - - 14|14 C2 T cell receptor alpha joining 2 other 21007 T(1;13)70H T70H - - reciprocal translocation, Chr 1 and 13, Harwell 70 other 100417441 Gm18612 - - 2|2 E5 voltage-dependent anion channel 2 pseudogene pseudo 545512 Gm5845 EG545512 - 3|3 A3 ribosomal protein L7A pseudogene pseudo 102639483 XR_376058 Gm35787 - - 3 G3|3 predicted gene, 35787 ncRNA 100040773 Gm11910 - - 4|4 A4 predicted gene 11910 pseudo 112025 Lwq2 - - - liver weight QTL 2 unknown 102636984 Mm.489390 XR_001781472 ENSMUSG00000115016 Gm33906 - - 14 E5|14 predicted gene, 33906 ncRNA 69169 Mm.46042 NM_026976 ENSMUSG00000042474 Fcmr 1810037B05Rik|Faim3|FcmuR|Toso - 1|1 E4 Fc fragment of IgM receptor protein-coding 102637561 XR_384436 Gm34338 - - 15 F1|15 predicted gene, 34338 ncRNA 100418035 Gm18958 - - 7|7 D3 patatin-like phospholipase domain containing 8 pseudogene pseudo 108168274 Gm46542 - - 16 C2|16 40S ribosomal protein S27-like pseudogene pseudo 21813 Mm.172346 NM_009371 ENSMUSG00000032440 Tgfbr2 1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII - 9 F3|9 68.39 cM transforming growth factor, beta receptor II protein-coding 15497 Mm.14435 NM_013821 ENSMUSG00000027869 Hsd3b6 D19210 - 3|3 F2.2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6 protein-coding 665227 NM_001104543 ENSMUSG00000090417 Vmn2r94 EG665227 - 17|17 A3.2 vomeronasal 2, receptor 94 protein-coding 100035130 Wbcq3 - - - white blood cell QTL 3 unknown 107491 Tel6q - - - telomeric sequence, Chr 6, q arm protein-coding 100503403 Gm13147 - - 4|4 78.46 cM zinc finger protein 813-like pseudo 399619 A930027P06Rik - - - RIKEN cDNA A930027P06 gene protein-coding 108168377 XR_001782435 Gm46621 - - 18 E1|18 predicted gene, 46621 ncRNA 105244215 Gm39863 - - 2|2 predicted gene, 39863 ncRNA 105246152 XR_876223 Gm41487 - - 16 C3.3|16 predicted gene, 41487 ncRNA 102640178 Mm.362752 Gm36307 - - 1|1 predicted gene, 36307 ncRNA 100041261 Mm.477434 NM_001101630 ENSMUSG00000095817 Gm3238 - - 10 C1|10 predicted gene 3238 protein-coding 19850 Mm.424506 NR_002842 Rnu3a - - 10|10 B1 U3A small nuclear RNA snRNA 105243283 XR_879182 Gm39246 - - 8 D3|8 predicted gene, 39246 ncRNA 20842 Mm.42135 NM_009282 ENSMUSG00000037286 Stag1 AU045003|SA-1|Scc3 - 9|9 E3.3-E4 stromal antigen 1 protein-coding 20639 Mm.1323 NM_021335 ENSMUSG00000008333 Snrpb2 2810052G09Rik - 2|2 G1 U2 small nuclear ribonucleoprotein B protein-coding 321000 Mm.259638 NM_028081 ENSMUSG00000056260 Lrif1 2010012G17Rik|4933421E11Rik|AI450568 - 3|3 F2.3 ligand dependent nuclear receptor interacting factor 1 protein-coding 19577 Rb(5.17)7Rma Rb7Rma - - Robertsonian translocation, Chr 5 and 17, Universita di Roma 7 other 545654 Mm.478784 NM_001161609 ENSMUSG00000095101 Gm13285 limitin - 4 C4|4 predicted gene 13285 protein-coding 53098 162c8A2 - - - DNA segment, 162c8A2 unknown 22017 Mm.10169 NM_016785 ENSMUSG00000021376 Tpmt AW106912 - 13 A5|13 24.5 cM thiopurine methyltransferase protein-coding 61436 D6Mit104 - - 6 51.53 cM DNA segment, Chr 6, Massachusetts Institute of Technology 104 unknown 626049 Mm.247410 NR_040630 ENSMUSG00000101583 Gm20753 - - 1|1 E2.1 predicted gene, 20753 ncRNA 78372 Mm.29952 NM_030093 ENSMUSG00000040767 Snrnp25 3300001G02Rik|AL033324|C16ORF33 - 11|11 A4 small nuclear ribonucleoprotein 25 (U11/U12) protein-coding 111572 Xmv38 Xmv-38 - - xenotropic murine leukemia virus 38 other 104176 Ly8 Ly-8 - - lymphocyte antigen 8 protein-coding 108167585 XR_001778763 Gm46071 - - 8 E1|8 predicted gene, 46071 ncRNA 16980 Mm.39640 NM_010732 ENSMUSG00000026443 Lrrn2 5730406J09Rik|NLRR-2 - 1|1 E4 leucine rich repeat protein 2, neuronal protein-coding 258661 Mm.377624 NM_146667 ENSMUSG00000095917 Olfr740 MOR106-4 - 14|14 C1 olfactory receptor 740 protein-coding 53007 N19T7 - - - DNA segment, N19T7 unknown 382118 Mm.86999 NM_001177505 ENSMUSG00000063488 Zkscan7 BC042569|Zfp167 - 9|9 F4 zinc finger with KRAB and SCAN domains 7 protein-coding 72913 2900006A17Rik - - 10|10 RIKEN cDNA 2900006A17 gene protein-coding 76990 Mm.489051 1700040E09Rik - - 12|12 RIKEN cDNA 1700040E09 gene protein-coding 100042058 Gm20900 - - 13|13 predicted gene, 20900 pseudo 74936 4930474B08Rik - - 1|1 RIKEN cDNA 4930474B08 gene protein-coding 13645 Mm.252481 NM_010113 ENSMUSG00000028017 Egf AI790464 - 3 G3|3 58.5 cM epidermal growth factor protein-coding 100036343 Ascla4 - - 3 50.09 cM atherosclerotic lesion area 4 unknown 17147 Mm.389349 NM_008545 ENSMUSG00000074881 Mageb3 Mage-b3|Mage-ps1|Mage-rs3|Smage3 - 2|2 E5 melanoma antigen, family B, 3 protein-coding 11777 Mm.312536 NM_009681 ENSMUSG00000024480 Ap3s1 - - 18|18 C adaptor-related protein complex 3, sigma 1 subunit protein-coding 100039957 Mm.220886 NR_015538 Gm2518 D630022E15Rik - 19 A|19 interferon induced transmembrane protein 2 pseudogene pseudo 105245576 XR_873721 Gm41016 - - 13 C3|13 predicted gene, 41016 ncRNA 69031 Mm.443379 Galnt6os 1810009N23Rik - 15|15 polypeptide N-acetylgalactosaminyltransferase 6, opposite strand unknown 100417813 Gm18845 - - 2|2 C1.1 heterogeneous nuclear ribonucleoprotein F pseudogene pseudo 100416323 Gm18039 - - 10|10 A2 predicted gene, 18039 pseudo 552899 Mm.26794 NM_001024148 ENSMUSG00000029268 Ugt2a2 - - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide A2 protein-coding 102634281 XR_385909 Gm31903 - - 17 E4|17 predicted gene, 31903 ncRNA 50878 Mm.285609 NM_016964 ENSMUSG00000036928 Stag3 SA-2 - 5 G2|5 77.01 cM stromal antigen 3 protein-coding 27359 Mm.38674 NM_013757 ENSMUSG00000031255 Sytl4 Gph|Slp4 - X|X E3 synaptotagmin-like 4 protein-coding 637620 Gm7213 EG637620 - 10 A3|10 enolase 2, gamma neuronal pseudogene pseudo 23854 Mm.275127 NM_054046 ENSMUSG00000001482 Def8 AI449518|D8Ertd713e|DEF-8 - 8 E1|8 72.1 cM differentially expressed in FDCP 8 protein-coding 212153 Mm.209835 NM_027801 ENSMUSG00000022701 Ccdc191 2610015P09Rik|8430422M09Rik|AU040712 - 16|16 B4 coiled-coil domain containing 191 protein-coding 105244299 XR_866742 Gm39937 - - 2 F1|2 predicted gene, 39937 ncRNA 319924 Mm.22879 NM_177034 ENSMUSG00000024897 Apba1 6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha - 19|19 B amyloid beta (A4) precursor protein binding, family A, member 1 protein-coding 108085 Itpkb-rs1 - - - inositol 1,4,5-trisphosphate 3-kinase B, related sequence 1 protein-coding 100042185 Gm14349 - - X|X A1.1 spindlin family, member 2 pseudogene pseudo 102637842 XR_391569 Gm34549 Gm44885 - 7 C|7 predicted gene, 34549 ncRNA 67917 Mm.391810 NM_175126 ENSMUSG00000074682 Zcchc3 2810406K24Rik - 2|2 G3 zinc finger, CCHC domain containing 3 protein-coding 15434 Mm.430708 NM_010468 ENSMUSG00000079277 Hoxd3 Hox-4.1|Hox-5.5 - 2 C3|2 44.13 cM homeobox D3 protein-coding 12998 Csnk2a1-rs3 - - - casein kinase 2, alpha 1, related sequence 3 protein-coding 67899 Mm.9953 NM_026442 ENSMUSG00000039163 Cmc1 2010110K16Rik|2010312P05Rik|AI596001 - 9|9 F3 COX assembly mitochondrial protein 1 protein-coding 606538 Gm13679 Ppia-ps2_981.1 - 2|2 D peptidylprolyl isomerase A pseudogene 2_981.1 pseudo 114173 Etohcta7 - - - ethanol conditioned taste aversion 7 unknown 110785 Mm.326349 Iglc1 Clambda1|Igl-C1 - 16 A3|16 11.8 cM immunoglobulin lambda constant 1 other 223722 Mm.37560 NM_001030014 ENSMUSG00000048755 Mcat AI225907|BC025519 - 15|15 E1 malonyl CoA:ACP acyltransferase (mitochondrial) protein-coding 76416 Mm.26684 NM_029602 ENSMUSG00000036214 Znrd1as 1700022C21Rik|AI746295|Znrd1-as - 17|17 B1 zinc ribbon domain containing 1, antisense protein-coding 74142 Mm.329136 NM_028782 ENSMUSG00000041168 Lonp1 1200017E13Rik|LON|Prss15 - 17|17 D lon peptidase 1, mitochondrial protein-coding 259082 Mm.246633 NM_147078 ENSMUSG00000090059 Olfr1062 MOR185-1 - 2|2 D olfactory receptor 1062 protein-coding 102632857 Gm14445 - - 2|2 98.23 cM predicted gene 14445 pseudo 63000 D12Mit283 - - 12 9.8 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 283 unknown 102632741 Mm.393443 XR_867162 Gm14342 - - 2 H4|2 103.41 cM predicted gene 14342 ncRNA 319412 Mm.260698 NM_176906 D830013H23Rik - - 11|11 D RIKEN cDNA D830013H23 gene unknown 102631860 XR_378799 Gm30086 - - 8 A2|8 predicted gene, 30086 ncRNA 402764 6030403N03Rik - - 7|7 RIKEN cDNA 6030403N03 gene protein-coding 667127 Gm15847 - - 5 C3.2|5 predicted gene 15847 protein-coding 102632668 XR_391289 Gm30684 Gm45106 - 7 B3|7 predicted gene, 30684 ncRNA 100417913 Gm18897 - - 16|16 C2 predicted gene, 18897 pseudo 105242756 XR_869403 Gm38887 - - 6 F1|6 predicted gene, 38887 ncRNA 668529 Gm9224 EG668529 - 17|17 C predicted gene 9224 pseudo 60899 D8Mit53 - - 8 27.13 cM DNA segment, Chr 8, Massachusetts Institute of Technology 53 unknown 20306 Mm.341574 NM_013654 ENSMUSG00000035373 Ccl7 MCP-3|Scya7|fic|marc|mcp3 - 11 C|11 49.83 cM chemokine (C-C motif) ligand 7 protein-coding 105242843 XR_881805 Gm38940 - - 7 A1|7 predicted gene, 38940 ncRNA 73498 NM_183098 1700084P21Rik - - 14|14 A1 RIKEN cDNA 1700084P21 gene unknown 110576 Tcra-V12.3 - - - T cell receptor alpha, variable 12.3 other 109198 Mm.359721 NR_045311 ENSMUSG00000100301 6030407O03Rik - - 1|1 C3 RIKEN cDNA 6030407O03 gene ncRNA 245600 XM_006528653 Gm4994 EG245600 - X|X E3 predicted gene 4994 protein-coding 54125 Mm.260194 NM_017401 ENSMUSG00000020474 Polm AI462166|B230309I03Rik|Tdt-N - 11|11 A1 polymerase (DNA directed), mu protein-coding 52297 D5Ertd440e - - - DNA segment, Chr 5, ERATO Doi 440, expressed unknown 621663 Gm6247 EG621663 - 13|13 D2.1 high mobility group box 3 pseudogene pseudo 67775 Mm.475107 NM_023386 ENSMUSG00000033355 Rtp4 5830458K16Rik|Ifrg28 - 16|16 B1 receptor transporter protein 4 protein-coding 98035 C86498 - - - expressed sequence C86498 protein-coding 73242 Mm.273155 NM_028476 ENSMUSG00000024426 Atat1 0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT - 17|17 B1 alpha tubulin acetyltransferase 1 protein-coding 100036170 Bod8 BOD14.1 - 14 11.53 cM bone length and organs 8 unknown 73078 Mm.301655 NM_028431 ENSMUSG00000029017 Pmpcb 3110004O18Rik|MPP11|MPPB|MPPP52 - 5|5 A3 peptidase (mitochondrial processing) beta protein-coding 61389 D5Mit132 - - 5 29.07 cM DNA segment, Chr 5, Massachusetts Institute of Technology 132 unknown 108168434 LOC108168434 - - X A1.1 heterogeneous nuclear ribonucleoprotein A3-like pseudo 58251 Mm.439815 NM_021440 ENSMUSG00000076433 Cep295nl Ddc8|FS39|Kiaa1731nl - 11|11 E2 CEP295 N-terminal like protein-coding 74204 Mm.235663 NM_028816 ENSMUSG00000000131 Xpo6 2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370 - 7|7 F3 exportin 6 protein-coding 258420 Mm.377946 NM_001001808 ENSMUSG00000044286 Olfr221 MOR205-1|MOR205-2|Olfr1514|Olfr221-ps1 - 14|14 C2 olfactory receptor 221 protein-coding 102632199 XR_875588 Gm30339 - - 15 E3|15 predicted gene, 30339 ncRNA 215467 Mm.246572 NM_001243258 ENSMUSG00000094893 Gm4791 D930036J05 - 9 A5.3|9 predicted gene 4791 protein-coding 75572 Mm.390319 NM_029344 ENSMUSG00000060923 Acyp2 2310004B09Rik - 11|11 A4 acylphosphatase 2, muscle type protein-coding 408070 Mm.233524 B930036G03Rik - - - RIKEN cDNA B930036G03 gene protein-coding 51977 D4Ggc3e - - - DNA segment, Chr 4, G. Consalez 3, expressed unknown 102633705 Mm.128789 XR_373514 C530043A13Rik - - 1|1 C3 RIKEN cDNA C530043A13 gene ncRNA 100417622 Gm18720 - - 2|2 F1 zinc finger, BED domain containing 4 pseudogene pseudo 259052 Mm.377809 NM_147050 ENSMUSG00000073922 Olfr659 MOR34-4 - 7|7 E3 olfactory receptor 659 protein-coding 71869 Mm.321740 NM_027971 ENSMUSG00000059956 Serpinb12 2300003F07Rik|4833409F13Rik - 1|1 E2.1 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12 protein-coding 100038476 Mm.387079 XR_001780622 Gm10457 - - 12 C2|12 predicted gene 10457 ncRNA 623601 Gm6443 EG623601 - 6|6 B2.3 ribosomal protein S2 pseudogene pseudo 69029 Mm.260042 NM_026914 ENSMUSG00000022452 Smdt1 1500032L24Rik|Emre - 15|15 E1 single-pass membrane protein with aspartate rich tail 1 protein-coding 20508 Mm.190503 NM_021712 ENSMUSG00000100241 Slc18a3 VAChT|VAT - 14 B|14 19.4 cM solute carrier family 18 (vesicular monoamine), member 3 protein-coding 22772 Mm.308936 NM_009574 ENSMUSG00000061524 Zic2 HPE5|Ku - 14 E5|14 65.97 cM zinc finger protein of the cerebellum 2 protein-coding 259162 Mm.377354 NM_207158 ENSMUSG00000059371 Olfr427 MOR105-7|MOR105-9 - 1|1 H3 olfactory receptor 427 protein-coding 107577 Inf1 - - 11|11 acute ozone induced inflammation protein-coding 102637417 XM_006523124 ENSMUSG00000068068 Gm7735 EG665661 - 16|16 C3.3 predicted gene 7735 protein-coding 110798 H2-S H-2S - - histocompatibility 2, S region (C4, Slp, Bf, C2) other 21941 Mm.12810 NM_009401 ENSMUSG00000028602 Tnfrsf8 Cd30|D1S166E|Ki|Ki-1 - 4 E1|4 78.17 cM tumor necrosis factor receptor superfamily, member 8 protein-coding 105247171 XR_881441 Gm42316 - - 4 D2.2|4 predicted gene, 42316 ncRNA 102633635 XR_386665 Gm31417 - - 19 C1|19 predicted gene, 31417 ncRNA 78977 Mm.24748 NM_024286 ENSMUSG00000019848 Popdc3 AA682104|Pop3 - 10 B2|10 23.35 cM popeye domain containing 3 protein-coding 320719 Mm.459265 NR_102315 ENSMUSG00000097207 6030443J06Rik 1700030G06Rik - 5|5 A3 RIKEN cDNA 6030443J06 gene ncRNA 102635083 Mm.98705 NR_151593 ENSMUSG00000097281 Gm26685 - - 1 H2.2|1 predicted gene, 26685 ncRNA 16513 Mm.254563 NM_020269 ENSMUSG00000044708 Kcnj10 BIR10|BIRK-1|Kir1.2|Kir4.1 - 1 H3|1 79.69 cM potassium inwardly-rectifying channel, subfamily J, member 10 protein-coding 100418069 Gm18981 - - 6|6 F1 nuclear receptor subfamily 5, group A, member 2 pseudogene pseudo 258970 Mm.223361 NM_146968 ENSMUSG00000075085 Olfr1242 MOR231-5 - 2|2 E1 olfactory receptor 1242 protein-coding 100418192 Gm17322 - - 9|9 B ADP-ribosylation factor-like 6 interacting protein 1 pseudogene pseudo 108168307 Mm.483470 XM_017317181 Gm46567 - - 16 B2|16 predicted gene, 46567 protein-coding 230459 Mm.268175 NM_145548 ENSMUSG00000028571 Cyp2j13 - - 4|4 C5 cytochrome P450, family 2, subfamily j, polypeptide 13 protein-coding 100416842 Gm18289 - - 6|6 A1 chitobiase, di-N-acetyl- pseudogene pseudo 227721 Mm.257236 NM_145521 ENSMUSG00000051373 Plpp7 D830019K17Rik|NET39|Ppapdc3 - 2|2 B phospholipid phosphatase 7 (inactive) protein-coding 54483 Mm.143718 NM_019453 ENSMUSG00000022534 Mefv FMF|TRIM20|pyrin - 16 A1|16 2.18 cM Mediterranean fever protein-coding 627998 Gm6822 EG627998 - 1|1 C1.2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene pseudo 100043277 Mm.246703 XR_380754 6430590A10Rik - - 10|10 D1 RIKEN cDNA 6430590A10 gene ncRNA 102637345 XR_390696 Gm34180 - - 4 C4|4 predicted gene, 34180 ncRNA 105246808 XR_879048 Gm42032 - - 8 C3|8 predicted gene, 42032 ncRNA 102632700 NR_152621 ENSMUSG00000100528 Gm28881 - - 10 B5.1|10 predicted gene 28881 ncRNA 667233 Gm8529 EG667233 - 18|18 D1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 74223 1700023D08Rik - - 7|7 RIKEN cDNA 1700023D08 gene protein-coding 100042530 Gm3889 - - 8|8 E2 predicted gene 3889 pseudo 27590 D4Pel1 - - - DNA segment, Chr 4, Pellicer 1 unknown 107856 Tel12p - - - telomeric sequence, Chr 12, centromere end protein-coding 78032 Mm.323595 LOC78032 - - 15|15 uncharacterized LOC78032 unknown 52451 D15Ggc3e - - - DNA segment, Chr 15, G. Consalez 3, expressed unknown 20442 Mm.248334 NM_009177 ENSMUSG00000013846 St3gal1 5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1 - 15|15 D2 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 105244263 XR_866638 Gm39904 - - 2 E3|2 predicted gene, 39904 ncRNA 100418364 Gm11279 - - 13|13 A3.1 deoxynucleotidyltransferase, terminal, interacting protein 2 pseudogene pseudo 102640416 XR_389527 Gm36481 - - 5 F|5 predicted gene, 36481 ncRNA 21411 Mm.252156 NM_013836 ENSMUSG00000041852 Tcf20 2810438H08Rik|SPBP|mKIAA0292 - 15|15 E1 transcription factor 20 protein-coding 102632764 XR_384146 Gm30752 - - 15 D1|15 predicted gene, 30752 ncRNA 105243429 XR_870847 Gm39355 - - 9 C|9 predicted gene, 39355 ncRNA 105244781 XR_868549 Gm40333 - - 5 G1.3|5 predicted gene, 40333 ncRNA 76128 5830495A06Rik - - 11|11 RIKEN cDNA 5830495A06 gene protein-coding 102631718 XR_380040 Gm29987 - - 10 A1|10 predicted gene, 29987 ncRNA 110120497 LOC110120497 - - - VISTA enhancer mm1540 biological-region 234779 Mm.192699 NM_172285 ENSMUSG00000034330 Plcg2 PLC-gamma-2|PLCgamma2|Plcg-2 - 8 E1|8 64.26 cM phospholipase C, gamma 2 protein-coding 102639434 XR_374745 Gm35748 - - 2 C3|2 predicted gene, 35748 ncRNA 108168185 LOC108168185 - - 14 A1 uncharacterized LOC108168185 pseudo 110855 Mm.450141 NM_033614 ENSMUSG00000024992 Pde6c cpfl1 - 19|19 C2 phosphodiesterase 6C, cGMP specific, cone, alpha prime protein-coding 100417946 Gm18913 - - 6|6 C1 DnaJ (Hsp40) homolog, subfamily C, member 2 pseudogene pseudo 20603 Mm.18652 NM_009214 ENSMUSG00000071708 Sms AI427066|Gy|SPMSY|SpmST|gyro - X F4|X 72.48 cM spermine synthase protein-coding 636104 Mm.459420 NM_001099307 ENSMUSG00000073077 Gm7173 EG636104 - X|X B predicted gene 7173 protein-coding 102467312 n-TGgcc7 n-Tg28 - 13 A3.1|13 nuclear encoded tRNA glycine 7 (anticodon GCC) tRNA 108204 Ppi-ps4 - - - peptidylprolyl isomerase, pseudogene 4 pseudo 69498 Mm.229463 2310007H11Rik - - 2|2 RIKEN cDNA 2310007H11 gene protein-coding 102632412 XR_387287 Gm30490 - - 1 D|1 predicted gene, 30490 ncRNA 100416034 Gm17882 - - 14|14 E2.1 TSPY-like 2 pseudogene pseudo 101437 Mm.199223 NM_133941 ENSMUSG00000030986 Dhx32 3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32 - 7|7 F3 DEAH (Asp-Glu-Ala-His) box polypeptide 32 protein-coding 78219 Mm.414868 NR_040755 ENSMUSG00000111830 4930568E12Rik - - 9|9 A1 RIKEN cDNA 4930568E12 gene ncRNA 319149 Mm.347699 NM_178204 ENSMUSG00000099583 Hist1h3d H3-b - 13|13 A3.1 histone cluster 1, H3d protein-coding 228413 Mm.259609 NM_178695 ENSMUSG00000027171 Prrg4 9930111I18Rik|TMG4 - 2|2 E2 proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) protein-coding 102638186 Gm20486 - - 12|12 8.42 cM predicted gene 20486 pseudo 102640482 XR_388035 Gm36531 - - 8 E1|8 predicted gene, 36531 ncRNA 109469 Hcs3 Hcs - - hepatocarcinogenesis susceptibility 3 unknown 16249 In(15)18Rk-d In(15)18Rk|In18Rk - - inversion, Chr 15, Roderick 18, distal other 100124584 Vmn2r-ps142 - - Y|Y D vomeronasal 2, receptor, pseudogene 142 pseudo 229900 Mm.45740 NM_145545 ENSMUSG00000040253 Gbp7 9830147J24Rik - 3|3 H1 guanylate binding protein 7 protein-coding 12014 Mm.491223 NM_007521 ENSMUSG00000040270 Bach2 E030004N02Rik - 4|4 A5 BTB and CNC homology, basic leucine zipper transcription factor 2 protein-coding 13265 Del(10)8H Del8H - - deletion, Chr 10, Harwell 8 other 78816 Mm.324305 NM_198101 ENSMUSG00000036246 Gmip 5031419I10Rik - 8|8 B3.3 Gem-interacting protein protein-coding 102640643 Gm36658 - - X A5|X predicted gene, 36658 pseudo 51928 D1Ertd692 D1Ertd692e - - DNA segment, Chr 1, ERATO Doi 692 unknown 100417726 Gm18787 - - 15|15 D1 predicted gene, 18787 pseudo 102639082 XR_001784549 Gm35482 - - 4 D2.3|4 predicted gene, 35482 ncRNA 71149 Mm.483176 NM_027697 ENSMUSG00000079304 Tex52 4933413G19Rik - 6|6 F3 testis expressed 52 protein-coding 102639379 XR_377962 Gm35706 - - 6 E3|6 predicted gene, 35706 ncRNA 67455 Mm.224306 NM_026167 ENSMUSG00000036782 Klhl13 1200009K10Rik|AI451128|Bklhd2|D130072F20Rik - X|X A2 kelch-like 13 protein-coding 100041877 XR_001782935 LOC100041877 - - 1|1 uncharacterized LOC100041877 ncRNA 320346 D930044I17Rik - - 8|8 RIKEN cDNA D930044I17 gene protein-coding 105243741 LOC105243741 - - X F4 ubiquitin-like pseudo 105245770 Gm29266 - - 14|14 predicted gene 29266 ncRNA 241066 Mm.276441 NM_139150 ENSMUSG00000026017 Carf Als2cr8|ECBRC-FC1|ECBRC-FC2 - 1|1 C2 calcium response factor protein-coding 75084 Mm.243841 NR_015494 ENSMUSG00000086607 4930511M06Rik - - 18|18 D3 RIKEN cDNA 4930511M06 gene ncRNA 110740347 Hbb-hs-85.5 -85HSs|5'HS-84/-85|HS-84.5|HS-85.5 - - beta-globin -85 hypersensitive sites biological-region 17391 Mm.389325 NM_010808 ENSMUSG00000027612 Mmp24 AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5 - 2 H1|2 77.26 cM matrix metallopeptidase 24 protein-coding 320398 Mm.275586 NM_177152 ENSMUSG00000020105 Lrig3 9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016 - 10|10 D3 leucine-rich repeats and immunoglobulin-like domains 3 protein-coding 77919 A330102K18Rik - - 6|6 RIKEN cDNA A330102K18 gene protein-coding 105246638 LOC105246638 - - X D 60S ribosomal protein L12 pseudogene pseudo 232196 Mm.404040 NM_146170 ENSMUSG00000046679 C87436 - - 6|6 D1 expressed sequence C87436 protein-coding 654806 Mm.266592 XR_876921 A930029G22Rik - - 17 E1.3|17 RIKEN cDNA A930029G22 gene unknown 625917 Rpl31-ps20 EG625917|Gm6635 - 19|19 C1 ribosomal protein L31, pseudogene 20 pseudo 105246703 XR_878510 Gm41950 - - 1 E3|1 predicted gene, 41950 ncRNA 105246780 XR_878740 Gm42018 - - 5 F|5 predicted gene, 42018 ncRNA 62482 D10Mit106 - - 10 11.67 cM DNA segment, Chr 10, Massachusetts Institute of Technology 106 unknown 102637988 Astx1a Gm14959 - X|X 49.81 cM amplified spermatogenic transcripts X encoded 1A protein-coding 105244919 XR_872820 Gm40441 - - 12 C3|12 predicted gene, 40441 ncRNA 76568 Mm.278597 NM_023831 ENSMUSG00000002031 Ift46 1500035H01Rik|AA408110|AI663846|R75047|c11orf2 - 9|9 A5.2 intraflagellar transport 46 protein-coding 100040710 Mm.184127 XR_373987 ENSMUSG00000079604 Gm13219 - - 2|2 A1 predicted gene 13219 unknown 74095 0610042E11Rik - - 2|2 RIKEN cDNA 0610042E11 gene protein-coding 105242964 XR_001778169 Gm39027 Gm44841 - 7 C|7 predicted gene, 39027 ncRNA 723957 NR_029830 ENSMUSG00000065582 Mir194-2 Mirn194-2|mir-194-2 - 19|19 A microRNA 194-2 ncRNA 100862346 Gm21661 - - Y|Y predicted gene, 21661 protein-coding 109399 Fob2 - - - F-line obesity QTL 2 unknown 76959 Mm.212763 NM_029814 ENSMUSG00000028419 Chmp5 2210412K09Rik|AW545668 - 4|4 A5 charged multivesicular body protein 5 protein-coding 630071 Gm7025 EG630071 - 7|7 A1 vomeronasal 2, receptor 37 pseudogene pseudo 105244869 Gm40400 - - 6|6 predicted gene, 40400 ncRNA 100861610 XR_001784302 Gm21075 - - 4 A5|4 predicted gene, 21075 pseudo 61311 D3Mit139 - - 3 37.7 cM DNA segment, Chr 3, Massachusetts Institute of Technology 139 unknown 102635363 Gm32722 - - 12|12 predicted gene, 32722 ncRNA 100042311 Gm3785 - - 13 B3|13 predicted gene 3785 protein-coding 118452 Mm.233837 NM_080640 ENSMUSG00000022296 Baalc 2810457D07Rik - 15 B3.1|15 15.18 cM brain and acute leukemia, cytoplasmic protein-coding 18022 Mm.457989 NM_008685 ENSMUSG00000058794 Nfe2 NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2 - 15 F3|15 58.62 cM nuclear factor, erythroid derived 2 protein-coding 108168816 XR_001783554 LOC108168816 - - 2 H3 uncharacterized LOC108168816 ncRNA 77382 Mm.366742 NR_045411 ENSMUSG00000105352 C030018K13Rik - - 5|5 C3.1 RIKEN cDNA C030018K13 gene ncRNA 56184 Mm.117113 NM_019544 ENSMUSG00000047002 Msgn1 Msgn|pMsgn1 - 12|12 A1.1 mesogenin 1 protein-coding 75505 Mm.189425 1700013M08Rik - - 5|5 RIKEN cDNA 1700013M08 gene protein-coding 105246733 Gm41975 - - 1|1 predicted gene, 41975 ncRNA 12496 Mm.482100 NM_009849 ENSMUSG00000015085 Entpd2 Cd39l1|NTPDase2 - 2|2 A3 ectonucleoside triphosphate diphosphohydrolase 2 protein-coding 60902 D8Mit64 - - 8 19.01 cM DNA segment, Chr 8, Massachusetts Institute of Technology 64 unknown 100042278 Gm3765 - - 7|7 E3 PWP1 homolog pseudogene pseudo 100316805 NR_035421 ENSMUSG00000080575 Mir1190 Mirn1190|mmu-mir-1190 - 12 E|12 51.16 cM microRNA 1190 ncRNA 100037396 Mm.447887 NR_033548 ENSMUSG00000085886 D030047H15Rik Gm15924 - 7 A1|7 RIKEN cDNA D030047H15 gene ncRNA 75318 4930547G20Rik - - 9|9 RIKEN cDNA 4930547G20 gene protein-coding 102637248 XR_380717 Gm34114 - - 10 C3|10 predicted gene, 34114 ncRNA 62414 D14Mit221 - - 14 12.95 cM DNA segment, Chr 14, Massachusetts Institute of Technology 221 unknown 27670 D11Moh23 - - 11 59.42 cM DNA segment, Chr 11, KL Mohlke 23 unknown 15484 Mm.5079 NM_008289 ENSMUSG00000031891 Hsd11b2 11HSD2 - 8 D3|8 53.04 cM hydroxysteroid 11-beta dehydrogenase 2 protein-coding 108167324 XR_001781029 Gm45938 - - 13 D1|13 predicted gene, 45938 ncRNA 76637 Mm.159751 NR_131759 ENSMUSG00000108113 Zim2 1700116N21Rik|Gm44015 - 7|7 A1 zinc finger, imprinted 2 ncRNA 93872 Mm.196703 NM_053126 ENSMUSG00000051663 Pcdhb1 PcdhbA - 18|18 B3 protocadherin beta 1 protein-coding 22247 Mm.13145 NM_009471 ENSMUSG00000022814 Umps 1700095D23Rik|AA408257|AL033308|BB164745 - 16|16 B3 uridine monophosphate synthetase protein-coding 56494 Mm.195451 NM_019650 ENSMUSG00000020946 Gosr2 2310032N09Rik|C76855|Gs27|SNARE|membrin - 11 E1|11 67.43 cM golgi SNAP receptor complex member 2 protein-coding 102632773 XR_384876 Gm30760 - - 16 B5|16 predicted gene, 30760 ncRNA 102447 AI120157 - - - expressed sequence AI120157 unknown 100040580 Gm12412 - - 4|4 B1 predicted gene 12412 pseudo 71335 5430430K15Rik - - 14|14 RIKEN cDNA 5430430K15 gene protein-coding 107417 Aap - - - active avoidance performance unknown 108484 Ms59 MMS59 - - minisatellites detected by probe MMS59 other 229499 Mm.255203 NM_153090 ENSMUSG00000059994 Fcrl1 A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1 - 3|3 F1 Fc receptor-like 1 protein-coding 77125 Mm.182359 NM_133775 ENSMUSG00000024810 Il33 9230117N10Rik|Il-33|Il1f11|NF-HEV - 19|19 C1 interleukin 33 protein-coding 61457 D6Mit182 - - 6 19.27 cM DNA segment, Chr 6, Massachusetts Institute of Technology 182 unknown 71828 Mm.61330 NM_023630 ENSMUSG00000024154 Gtf2a1l 1700011N16Rik|Alf|Gtf2a1lf - 17|17 E4 general transcription factor IIA, 1-like protein-coding 383339 Gm5238 EG383339|Ppia-ps18_319.1 - 18|18 B1 peptidyl-prolyl cis-trans isomerase A pseudogene chr18_319.1 pseudo 16285 In(4)32Rk-d In(4)32Rk|In32Rk - - inversion, Chr 4, Roderick 32, distal other 18293 Mm.276348 NM_010956 ENSMUSG00000020456 Ogdh 2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192 - 11|11 A1 oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) protein-coding 102640167 XR_377348 Gm36300 - - 6 A1|6 predicted gene, 36300 ncRNA 75888 NR_152120 ENSMUSG00000104766 4930573H18Rik Gm43734 - 3|3 F2.1 RIKEN cDNA 4930573H18 gene ncRNA 69772 Mm.45121 NM_027208 ENSMUSG00000028167 Bdh2 1810026B04Rik|Dhrs6 - 3|3 G3 3-hydroxybutyrate dehydrogenase, type 2 protein-coding 60940 DXMit33 - - X 73.55 cM DNA segment, Chr X, Massachusetts Institute of Technology 33 unknown 100662 Mm.319836 NR_030673 ENSMUSG00000097392 D930016D06Rik 100041172|1110004B06Rik|AI451450|Gm3179 - 5|5 E5 RIKEN cDNA D930016D06 gene ncRNA 16597 Mm.396499 NM_010636 ENSMUSG00000072294 Klf12 2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik - 14 E2.2-E2.3|14 50.9 cM Kruppel-like factor 12 protein-coding 667198 Gm8508 EG667198 - 5|5 F predicted gene 8508 pseudo 414279 LOC414279 - - 4|4 uncharacterized LOC414279 unknown 112185 Skts7 - - 4 53.43 cM skin tumor susceptibility 7 unknown 78527 Mm.414571 C330019O22Rik - - 16|16 RIKEN cDNA C330019O22 gene protein-coding 102638122 XR_378370 Gm34760 - - 7 E2|7 predicted gene, 34760 ncRNA 100125295 Tglq3 - - - triglyceride QTL 3 unknown 19475 Rb(11.14)1Dn Rb1Dn - - Robertsonian translocation, Chr 11 and 14, Davisson 1 other 71876 Mm.22108 NM_027973 ENSMUSG00000031629 Cenpu 1700029A22Rik|Mlf1ip - 8|8 B1.1 centromere protein U protein-coding 71277 4933435N07Rik - - 2|2 RIKEN cDNA 4933435N07 gene protein-coding 100040752 Gm2947 - - 8|8 C5 predicted gene 2947 pseudo 27514 B405C9T - - - DNA segment, B405C9T unknown 100036468 Hmtb2 - - - hemostasis and thrombosis 2 unknown 100862053 Gm21435 - - Y|Y predicted gene, 21435 protein-coding 231003 Mm.423038 NM_198305 ENSMUSG00000078485 Klhl17 AL022703|BC058738 - 4|4 E2 kelch-like 17 protein-coding 74584 Mm.379196 4833413G10Rik - - 5|5 RIKEN cDNA 4833413G10 gene protein-coding 80912 Mm.440206 NM_030722 ENSMUSG00000028580 Pum1 AA517475|Pumm|mKIAA0099 - 4|4 D2.2 pumilio RNA-binding family member 1 protein-coding 387135 NR_029736 ENSMUSG00000065403 Mir18 Mirn18|mir-18a|mmu-mir-18|mmu-mir-18a - 14|14 E4 microRNA 18 ncRNA 100042041 Gm15164 - - X|X C3 predicted gene 15164 pseudo 100043217 Gm10237 - - 16|16 B3 predicted gene 10237 protein-coding 676837 Mm.88795 XR_140424 Gm38417 - - 17|17 predicted gene, 38417 unknown 100503735 Gm7177 EG636398 - 17|17 A2 zinc finger protein 91 pseudogene pseudo 102636401 XR_880879 Gm33476 - - 5 A3|5 predicted gene, 33476 ncRNA 100312532 Vmn1r-ps100 Gm11296 - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 100 pseudo 629971 Rpl36-ps1 Gm11740 - 11|11 E2 ribosomal protein L36, pseudogene 1 pseudo 665282 Gm7568 EG665282 - 1|1 A3 predicted gene 7568 protein-coding 110500 Tcra-V1.6 - - - T cell receptor alpha, variable 1.6 other 62458 D14Mit259 - - 14 27.65 cM DNA Segment, Chr 14 Massachusetts Institute of Technology 259 unknown 62995 D12Mit275 - - 12 44.03 cM DNA segment, Chr 12, Massachusetts Institute of Technology 275 unknown 665433 Mm.250564 NM_001177544 ENSMUSG00000094248 Hist1h2ao - - 13|13 A3.1 histone cluster 1, H2ao protein-coding 56620 Mm.271782 NM_020001 ENSMUSG00000023349 Clec4n Clec6a|Clecsf10|Nkcl - 6 F2|6 58.3 cM C-type lectin domain family 4, member n protein-coding 671641 Rps12-ps24 Gm10063|Rps12l2 - 8|8 A4 ribosomal protein S12, pseudogene 24 pseudo 111846 Iapls3-20 - - - intracisternal A particle, lymphocyte specific 3-20 other 320004 Mm.391028 A930002H24Rik - - 17|17 E1.1 RIKEN cDNA A930002H24 gene unknown 100503716 Mm.485725 Gm19854 - - 2|2 69.39 cM predicted gene, 19854 unknown 21907 Mm.287100 NM_152229 ENSMUSG00000019803 Nr2e1 Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless - 10 B2|10 22.89 cM nuclear receptor subfamily 2, group E, member 1 protein-coding 100038560 Mm.429758 NR_152189 Gm10687 - - 9 A5.1|9 predicted gene 10687 ncRNA 102467469 n-TRcct5 n-Tr14 - 11 E2|11 nuclear encoded tRNA arginine 5 (anticodon CCT) tRNA 100504207 Mm.297831 NM_001004161 ENSMUSG00000062132 Arhgap33os Gm1082 - 7|7 B1 Rho GTPase activating protein 33, opposite strand ncRNA 319772 Mm.440271 NM_177000 ENSMUSG00000044092 C130050O18Rik - - 5|5 G2 RIKEN cDNA C130050O18 gene protein-coding 66880 Mm.316418 NM_025822 ENSMUSG00000034544 Rsrc1 1200013F24Rik|SRrp53 - 3|3 E1 arginine/serine-rich coiled-coil 1 protein-coding 100417342 Gm18545 - - 3|3 E3 polymerase (DNA directed), iota pseudogene pseudo 636659 Gm7182 EG636659 - 1 A1|1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide pseudogene pseudo 100418144 Gm19032 - - 7|7 C non-POU-domain-containing, octamer binding protein pseudogene pseudo 493009 Orgwq6 - - - organ weight QTL 6 unknown 102465766 NR_106121 ENSMUSG00000105697 Mir7661 mmu-mir-7661 - 6|6 E1 microRNA 7661 ncRNA 102632048 Mm.417635 NR_153388 Gm30223 - - 3 A1|3 predicted gene, 30223 ncRNA 62790 D15Mit198 - - 15 39.4 cM DNA segment, Chr 15, Massachusetts Institute of Technology 198 unknown 668560 Mm.441482 Gm9243 EG668560 - 14|14 D3 claspin homolog pseudogene pseudo 102636593 XR_373757 Gm33612 - - 1 H4|1 predicted gene, 33612 ncRNA 544724 Mm.393362 LOC544724 - - 10|10 C2-C3 uncharacterized LOC544724 protein-coding 100035273 Ascla5 - - - atherosclerotic lesion area 5 unknown 50908 Mm.219527 NM_144938 ENSMUSG00000038521 C1s1 AA959438|AI255193|AI327365|C1s|C1sa - 6|6 F2 complement component 1, s subcomponent 1 protein-coding 11844 Mm.389075 NM_007480 ENSMUSG00000020440 Arf5 - - 6|6 A3.3 ADP-ribosylation factor 5 protein-coding 666277 Gm8019 EG666277 - X|X F1 ribosomal protein S7 pseudogene pseudo 102633475 XR_866099 Gm31291 - - 2 B|2 predicted gene, 31291 ncRNA 105244294 XR_866737 Gm39933 - - 2 F1|2 predicted gene, 39933 ncRNA 110143 Rn18s-rs3 - - - 18s RNA, related sequence 3 rRNA 105242845 XR_880102 Gm38942 - - 11 C|11 predicted gene, 38942 ncRNA 402734 Mm.337666 NR_038011 C730036E19Rik lncLSTR - 1|1 G1 RIKEN cDNA C730036E19 gene ncRNA 110027 Cpu3 - - - caudate putamen enriched 3 protein-coding 21685 Mm.270278 NM_017376 ENSMUSG00000022389 Tef 2310028D20Rik - 15 E1|15 38.25 cM thyrotroph embryonic factor protein-coding 19624 Rb(8.19)1Ct Rb1Ct - - Robertsonian translocation, Chr 8 and 19, Cattanach 1 other 50724 Mm.340083 NM_001081168 ENSMUSG00000020519 Sap30l 2310079P12Rik|AF006998|L55 - 11|11 B1.3 SAP30-like protein-coding 22786 Mm.24767 NM_009580 ENSMUSG00000024734 Zp1 - - 19 A|19 7.36 cM zona pellucida glycoprotein 1 protein-coding 20166 Mm.4139 NM_009106 ENSMUSG00000034930 Rtkn - - 6 C3|6 35.94 cM rhotekin protein-coding 383665 Gm13326 - - 2|2 A3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 75742 6820402A03Rik - - 1|1 RIKEN cDNA 6820402A03 gene protein-coding 102633127 Gm28692 - - Y|Y predicted gene 28692 ncRNA 677561 Gm15375 - - 1|1 D UDP glycosyltransferase 1 family, polypeptide A10 pseudogene pseudo 111953 Iap3rb19 - - - intracisternal A-type particle, U3 region, SINE repeat b-19 other 18478 Mm.263539 NM_008777 ENSMUSG00000020051 Pah AW106920 - 10 C1|10 43.64 cM phenylalanine hydroxylase protein-coding 108168001 XR_001780618 Gm46351 - - 12 C1|12 predicted gene, 46351 ncRNA 94090 Mm.184012 NM_053167 ENSMUSG00000021071 Trim9 - - 12|12 C2 tripartite motif-containing 9 protein-coding 625605 Mm.484763 NM_001105156 ENSMUSG00000096180 Vmn2r49 - - 7|7 A1 vomeronasal 2, receptor 49 protein-coding 107328 Mm.391161 NM_153597 ENSMUSG00000047656 Trpt1 AU079016|AW045591|Tpt1|Tpt1h - 19|19 A tRNA phosphotransferase 1 protein-coding 62216 D16Mit58 - - 16 22.55 cM DNA segment, Chr 16, Massachusetts Institute of Technology 58 unknown 404262 Mrgpra18-ps MrgA18 - 7|7 B4 MAS-related GPR, member A18, pseudogene pseudo 108522 Ms13-13 Ms13-Ps13 - - minisatellite 13-13 detected by M13 phage probe other 17201 Mm.57183 NM_008561 ENSMUSG00000038537 Mc3r MC3-R - 2 H3|2 94.8 cM melanocortin 3 receptor protein-coding 62507 D10Mit176 - - 10 46.67 cM DNA segment, Chr 10, Massachusetts Institute of Technology 176 unknown 16228 In(1)5H In5H - - inversion, Chr 1, Harwell 5 other 100043618 Gm10120 - - 10|10 D3 small nuclear ribonucleoprotein D2 pseudogene pseudo 113864 Mm.431974 NM_053237 ENSMUSG00000114982 Vmn1r14 V1rc7 - 6|6 B3 vomeronasal 1 receptor 14 protein-coding 61824 D2Mit339 - - 2 68.52 cM DNA segment, Chr 2, Massachusetts Institute of Technology 339 unknown 320682 Mm.40569 9330174C13Rik - - 7|7 RIKEN cDNA 9330174C13 gene protein-coding 100534285 Gm21013 - - 9|9 D chimerin (chimaerin) 1 pseudogene pseudo 236900 Mm.12775 NM_145630 ENSMUSG00000035232 Pdk3 2610001M10Rik|AI035637 - X|X C3 pyruvate dehydrogenase kinase, isoenzyme 3 protein-coding 105243378 XR_870640 Gm39319 - - 9 A5.1|9 predicted gene, 39319 ncRNA 13669 Mm.2238 NM_010123 ENSMUSG00000024991 Eif3a A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139 - 19|19 D3 eukaryotic translation initiation factor 3, subunit A protein-coding 68270 Mm.41977 NM_026648 ENSMUSG00000031831 Dnaaf1 4930457P18Rik|Lrrc50|m4Bei - 8|8 E1 dynein, axonemal assembly factor 1 protein-coding 62319 D2Mit210 - - 2 98.05 cM DNA segment, Chr 2, Massachusetts Institute of Technology 210 unknown 109726 Bcga - - - BCG-induced anergy protein-coding 102635531 XR_378853 Gm32841 - - 8 A3|8 predicted gene, 32841 ncRNA 105243068 XR_001778297 Gm39099 - - 7 F3|7 predicted gene, 39099 ncRNA 107468 Rim5 - - - recombination induced mutation 5 protein-coding 52123 Mm.24117 NM_026792 ENSMUSG00000031467 Agpat5 1110013A05Rik|D8Ertd319e - 8 A1.3|8 10.3 cM 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) protein-coding 102640962 Mm.406073 XR_378918 Gm16348 - - 8 A4|8 23.89 cM predicted gene 16348 ncRNA 226551 Mm.170002 NM_172645 ENSMUSG00000040297 Suco 4732491B11|AI848100|AU016931|Opt - 1|1 H2.1 SUN domain containing ossification factor protein-coding 102634873 XR_378022 D830015G05Rik - - 6|6 F2 RIKEN cDNA D830015G05 gene ncRNA 384383 Gm5305 EG384383 - 6|6 B2.3 predicted gene 5305 pseudo 15039 Mm.195061 NM_010396 ENSMUSG00000056116 H2-T22 27b|H-2T17|H-2T22|H2-T17|T22b - 17 B1|17 18.87 cM histocompatibility 2, T region locus 22 protein-coding 102636339 Gm16005 - - 17 A3.3|17 14.36 cM predicted gene 16005 pseudo 75800 XR_877968 4930442E04Rik - - 19|19 D3 RIKEN cDNA 4930442E04 gene ncRNA 97871 C78878 - - - expressed sequence C78878 protein-coding 110120400 LOC110120400 - - - VISTA enhancer mm998 biological-region 108167469 Gm45549 - - 7 A1|7 predicted gene 45549 pseudo 100038538 Mm.405005 NM_001177750 ENSMUSG00000074826 Gm10767 - - 13 B3|13 predicted gene 10767 protein-coding 105247266 XR_882136 Gm42394 - - 7 B5|7 predicted gene, 42394 ncRNA 269582 Mm.243962 NM_175554 ENSMUSG00000042489 Clspn B130025E01|C85083|E130314M08Rik - 4|4 D2.2 claspin protein-coding 69713 Mm.371635 NM_027181 ENSMUSG00000079480 Pin4 2410002I22Rik|EPVH|Par14 - X|X D protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) protein-coding 100415785 Mm.380213 NM_001177484 ENSMUSG00000090225 Gm11559 - - 11 D|11 63.21 cM predicted gene 11559 protein-coding 15259 Mm.257925 NM_010434 ENSMUSG00000027177 Hipk3 DYRK6|FIST3|PKY|mir-1902 - 2|2 E2 homeodomain interacting protein kinase 3 protein-coding 69576 Mm.432545 NM_183283 ENSMUSG00000046345 Smco1 2310010M20Rik - 16|16 B3 single-pass membrane protein with coiled-coil domains 1 protein-coding 100042936 Gm4115 - - 19|19 D2 crumbs homolog 1 pseudogene pseudo 102635879 Mm.426426 XM_006525247 4933407O12Rik - - 17|17 E3 RIKEN cDNA 4933407O12 gene protein-coding 66641 Mm.33937 NM_025679 ENSMUSG00000027854 Sike1 2810005O12Rik|5730470L24Rik|AI450236|AI839862|Sike|Sikeb - 3|3 F2.2 suppressor of IKBKE 1 protein-coding 112325 Wg1 - - - weight gain in high growth mice 1 unknown 100041840 Mm.491031 NM_001256501 ENSMUSG00000072739 Gm10408 100040797|Gm2971 - 14|14 A1 predicted gene 10408 protein-coding 102637607 XR_374274 Gm34372 - - 2 B|2 predicted gene, 34372 ncRNA 213753 Mm.219581 NM_183149 ENSMUSG00000041130 Zfp598 BC023040|Ntrap|Znf598 - 17|17 A3.3 zinc finger protein 598 protein-coding 217069 Mm.248445 NM_009546 ENSMUSG00000000275 Trim25 AA960166|AL022677|EFP|Zfp147 - 11|11 C tripartite motif-containing 25 protein-coding 105242496 LOC105242496 - - - vasohibin-1 protein-coding 61293 D2Mit285 - - 2 75.41 cM DNA segment, Chr 2, Massachusetts Institute of Technology 285 unknown 60917 D9Mit18 - - 9 71.49 cM DNA segment, Chr 9, Massachusetts Institute of Technology 18 unknown 259030 Mm.377797 NM_147028 ENSMUSG00000050772 Olfr1124 MOR264-24|MOR264-3|Olfr1124-ps1|Olfr1125 - 2|2 D olfactory receptor 1124 protein-coding 52340 D4Ertd513e - - 4 45.52 cM DNA segment, Chr 4, ERATO Doi 513, expressed unknown 101055909 LOC101055909 - - 13 D1 protein transport protein Sec61 subunit beta pseudogene pseudo 12514 Mm.15819 NM_009853 ENSMUSG00000018774 Cd68 Lamp4|Scard1|gp110 - 11 B3|11 42.86 cM CD68 antigen protein-coding 13101 Mm.174372 NM_010005 ENSMUSG00000094806 Cyp2d10 AI303445|Cyp2d|P450-2D - 15 E1|15 38.58 cM cytochrome P450, family 2, subfamily d, polypeptide 10 protein-coding 102635122 XR_379371 3110005L24Rik - - 9|9 A5.3 RIKEN cDNA 3110005L24 gene ncRNA 105245416 XR_872668 Gm40874 - - 12 A3|12 predicted gene, 40874 ncRNA 73796 Mm.410832 NR_045940 ENSMUSG00000108885 4930402F11Rik - - 7|7 C RIKEN cDNA 4930402F11 gene ncRNA 102638007 XR_384088 Gm34678 - - 15 C|15 predicted gene, 34678 ncRNA 16909 Mm.29266 NM_008505 ENSMUSG00000032698 Lmo2 Rbtn-2|Rbtn2|Rhom-2|Ttg2 - 2 E2|2 54.46 cM LIM domain only 2 protein-coding 492912 Nidd2k - - - Nidd2 on KK-A unknown 105243369 XR_870602 Gm15521 - - 9 A4|9 15.12 cM predicted gene 15521 ncRNA 224727 Mm.203962 NM_057171 ENSMUSG00000024392 Bag6 2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe - 17 B1|17 18.59 cM BCL2-associated athanogene 6 protein-coding 100035899 Ath27 - - - atherosclerosis 27 unknown 111471 Xmmv7 Env-7|Xmmv-7 - - xenotropic-MCF leukemia virus 7 other 102466207 NR_105876 ENSMUSG00000098672 Mir6911 Gm27822|mmu-mir-6911 - 10|10 C1 microRNA 6911 ncRNA 78382 Mm.235474 NM_001166172 ENSMUSG00000086848 Lce6a 2210420J11Rik - 3|3 F1 late cornified envelope 6A protein-coding 100972 Mm.41555 NM_027295 ENSMUSG00000029128 Rab28 2700023P08Rik|AW496496 - 5|5 B3 RAB28, member RAS oncogene family protein-coding 108167494 LOC108167494 - - 7 B1 major allergen I polypeptide chain 1-like pseudo 21285 T(9;12)20Ad T20Ad - - reciprocal translocation, Chr 9 and 12, Adler 20 other 114273 Manh9 QTL-SH7.1 - - mandible shape 9 unknown 170742 Mm.200120 NM_133210 ENSMUSG00000055200 Sertad3 AW124805|D1Mgi51|Rbt1|Sei3 - 7|7 A3 SERTA domain containing 3 protein-coding 100416231 Gm15877 - - 7|7 A1 ribosomal protein L5 pseudogene pseudo 100417488 Gm18642 - - 7|7 B5 coronin, actin binding protein 1B pseudogene pseudo 102633345 Mm.390757 XM_006519927 Gm9922 - - 14|14 E2.3 predicted gene 9922 protein-coding 24084 Mm.23895 NM_011902 ENSMUSG00000028845 Tekt2 AU014974|tektin-t - 4|4 D2.2 tektin 2 protein-coding 246747 Mm.28800 NM_145635 ENSMUSG00000044405 Adig SMAF-1|Smaf1 - 2|2 H1 adipogenin protein-coding 74237 Mm.40888 NM_133755 ENSMUSG00000025474 Tubgcp2 1700022B05Rik - 7|7 F4 tubulin, gamma complex associated protein 2 protein-coding 116921 D13Jde8 - - - DNA segment, Chr 13, Jan Deussing 8 unknown 102637161 Mm.336535 XR_380854 Gm34045 - - 10 D2|10 predicted gene, 34045 ncRNA 102467641 n-TCgca21 n-Tc21 - 6 B2.3|6 nuclear encoded tRNA cysteine 21 (anticodon GCA) tRNA 105246826 Gm42050 - - 8|8 predicted gene, 42050 ncRNA 75050 Mm.385742 NM_175214 ENSMUSG00000060176 Kif27 4930517I18Rik - 13|13 B1 kinesin family member 27 protein-coding 78011 Mm.452595 4930478K11Rik - - 12|12 RIKEN cDNA 4930478K11 gene protein-coding 112160 Bwem2 - - 13 30.06 cM body weight day 30 males 2 unknown 15142 Hc11 Cen11 - - heterochromatin, Chr 11 other 110120525 LOC110120525 - - - VISTA enhancer mm1469 biological-region 104137 H40 H(Igh)|H-40 - - histocompatibility 40 protein-coding 268670 Mm.56274 NM_172392 ENSMUSG00000057396 Zfp759 BC028265|Rslcan-8|Rslcan8 - 13 B3|13 34.54 cM zinc finger protein 759 protein-coding 69320 Mm.443242 NR_045476 ENSMUSG00000086330 1700007J10Rik 4930573L17Rik - 11|11 B1.3 RIKEN cDNA 1700007J10 gene ncRNA 102635715 Gm32981 - - 12|12 predicted gene, 32981 ncRNA 67718 Mm.23784 NM_026335 ENSMUSG00000049593 Lce1h 2310066F03Rik|AI426284|Sprrl9 - 3|3 F1 late cornified envelope 1H protein-coding 100418262 Gm19106 - - X|X A5 glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 102634357 Gm31958 - - 10|10 predicted gene, 31958 ncRNA 100862173 Gm21539 - - Y|Y predicted gene, 21539 protein-coding 105243492 XR_880238 ENSMUSG00000110636 Gm39397 Gm45840 - 11 E1|11 predicted gene, 39397 ncRNA 17114 Mm.297872 M6pr-ps - - 3 F2.2|3 43.1 cM mannose-6-phosphate receptor, pseudogene pseudo 100502998 Gm15211 - - X|X 76.61 cM predicted gene 15211 pseudo 108167388 XR_001783116 LOC108167388 - - - uncharacterized LOC108167388 ncRNA 62059 D10Mit13 - - 10 60.91 cM DNA segment, Chr 10, Massachusetts Institute of Technology 13 unknown 100040552 Mm.416917 NR_040388 Gm2837 - - X A3.1|X spindlin family, member 2 pseudogene pseudo 73933 Mm.361898 4930412O06Rik - - 8|8 RIKEN cDNA 4930412O06 gene protein-coding 114169 Etohcta3 - - - ethanol conditioned taste aversion 3 unknown 15124 Hba-ps3 Hba-3ps - 15 D1|15 22.75 cM hemoglobin alpha, pseudogene 3 pseudo 99029 Mm.299147 AI596198 - - - expressed sequence AI596198 unknown 622000 Gm6278 EG622000 - 16|16 C3.3 ribosomal protein, large, P0 pseudogene pseudo 69097 Mm.307027 NM_001024134 ENSMUSG00000050747 Trim15 1810012B10Rik - 17|17 B1 tripartite motif-containing 15 protein-coding 100418182 Gm19059 - - 1|1 H3 Fc receptor, IgE, high affinity I, alpha polypeptide pseudogene pseudo 69806 Mm.341021 NM_027216 ENSMUSG00000041654 Slc39a11 1810074D23Rik - 11|11 E2 solute carrier family 39 (metal ion transporter), member 11 protein-coding 668743 XM_001003412 Frg2f2 EG668743|Gm9328 - 14|14 E2.3 FSHD region gene 2 family member 2 protein-coding 102634991 XR_386682 Gm32440 - - 19 C2|19 predicted gene, 32440 ncRNA 74549 Mm.269061 NM_028993 ENSMUSG00000031858 Mau2 9130404D08Rik|A930019L04Rik|C77863|C79014|Mau-2|mKIAA0892 - 8|8 B3.3 MAU2 sister chromatid cohesion factor protein-coding 100036336 Sdtq1 L1.2 - - skull development traits QTL 1 unknown 20272 Mm.38127 NM_009135 ENSMUSG00000034810 Scn7a 1110034K09Rik|AI642000|NaG|Nav2|Nav2.3|Nax|Scn6a - 2 C1.3|2 39.21 cM sodium channel, voltage-gated, type VII, alpha protein-coding 100503982 Gm19998 - - 10|10 45.72 cM predicted gene, 19998 ncRNA 242418 Mm.317668 NM_153167 ENSMUSG00000035572 Dcaf10 AA959934|Wdr32 - 4|4 B1 DDB1 and CUL4 associated factor 10 protein-coding 100416247 Gm18001 - - 8|8 C2 ribosomal protein S2 pseudogene pseudo 101056011 Mm.460652 LOC101056011 - - - uncharacterized LOC101056011 protein-coding 668095 Lipo5 EG668095|Gm8975 - 19 C1|19 lipase, member O5 pseudo 102639274 XR_383726 Gm35623 - - 14 E2.3|14 predicted gene, 35623 ncRNA 13543 Mm.5114 NM_007888 ENSMUSG00000020888 Dvl2 - - 11 B3|11 42.96 cM dishevelled segment polarity protein 2 protein-coding 320962 B130040O20Rik - - 11|11 B1.3 RIKEN cDNA B130040O20 gene unknown 105245540 Gm40985 - - 13|13 predicted gene, 40985 ncRNA 100040987 Gm15018 - - X|X E3 developmental pluripotency associated 2 pseudogene pseudo 108168027 XR_001780683 Gm46375 - - 12 E|12 predicted gene, 46375 ncRNA 102467618 n-TVaac5 n-Tv5 - 13 A3.1|13 nuclear encoded tRNA valine 5 (anticodon AAC) tRNA 105180375 Mm.428042 NM_001304267 ENSMUSG00000106715 Tmem265 - - 7 F3|7 transmembrane protein 265 protein-coding 100035551 Loca2 - - 16 2.57 cM locomotor activity 2 unknown 102466218 NR_106021 ENSMUSG00000098839 Mir7054 Gm27557|mmu-mir-7054 - 7|7 B3 microRNA 7054 ncRNA 72674 Mm.259976 NM_028320 ENSMUSG00000026457 Adipor1 2810031L11Rik|ACDCR1|CGI-45|Paqr1 - 1|1 E4 adiponectin receptor 1 protein-coding 102635543 XR_882270 Gm32850 Gm45087 - 7 D3|7 predicted gene, 32850 ncRNA 100418385 Gm19175 - - 3|3 A1 PRP38 pre-mRNA processing factor 38 domain containing A pseudogene pseudo 72460 2610011E03Rik - - 5|5 RIKEN cDNA 2610011E03 gene protein-coding 114669 9430032L10Rik - - 17|17 RIKEN cDNA 9430032L10 gene protein-coding 69563 Mm.64672 NM_001304739 ENSMUSG00000019933 Mrln 2310015B20Rik|Linc-RAM|Mln - 10|10 B5.3 myoregulin protein-coding 109323 Mm.275553 NM_175425 ENSMUSG00000061535 C1qtnf7 5530401N20Rik|8430425G24Rik|Ctrp7 - 5|5 B3 C1q and tumor necrosis factor related protein 7 protein-coding 76021 5830418L09Rik - - 2|2 RIKEN cDNA 5830418L09 gene protein-coding 17616 Ms38 MMS38 - - minisatellites detected by probe MMS38 other 102640845 Mm.405615 NR_132433 ENSMUSG00000098075 Gm26994 - - 8 E1|8 predicted gene, 26994 ncRNA 105242543 Mm.453017 Gm15672 - - 5|5 78.01 cM predicted gene 15672 ncRNA 100035506 Lwq9 - - - liver weight QTL 9 unknown 623169 Mm.440508 NR_030688 Gm6402 EG623169 - 17|17 A3.3 ribosomal protein S17 pseudogene pseudo 100502904 Mm.483616 Gm19445 - - 3 B|3 16.0 cM predicted gene, 19445 unknown 56746 Mm.23385 NM_019981 ENSMUSG00000062773 Tex101 1700008H15Rik|AI429076|TES101RP - 7|7 A3 testis expressed gene 101 protein-coding 76862 Mm.410568 4833405L11Rik C87958 - 12|12 A2 RIKEN cDNA 4833405L11 gene protein-coding 434800 Mm.460747 NM_001033786 ENSMUSG00000073094 Smim9 4930428E23Rik - X|X A7.3 small integral membrane protein 9 protein-coding 53102 Y95m1f5 - - - DNA segment, Y95m1f5 unknown 69837 Mm.12261 NM_197992 ENSMUSG00000069678 Pcgf1 2010002K04Rik|AU024121|Nspc1 - 6 C3|6 35.94 cM polycomb group ring finger 1 protein-coding 100503973 LOC100503973 - - X F3 histidine-rich glycoprotein-like pseudo 69541 Mm.389117 NM_027111 ENSMUSG00000026085 Lyg1 2300002O18Rik - 1|1 B lysozyme G-like 1 protein-coding 19585 Rb(6.12)3Sic Rb3Sic - - Robertsonian translocation, Chr 6 and 12, Sicily 3 other 23960 Mm.389688 NM_011852 ENSMUSG00000066861 Oas1g AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1 - 5 F|5 60.65 cM 2'-5' oligoadenylate synthetase 1G protein-coding 71294 Mm.417804 Nr5a1os 4933433P16Rik - 2|2 nuclear receptor subfamily 5, group A, member 1, opposite strand protein-coding 319308 Mm.2899 XR_881079 A830012C17Rik - - 4|4 A1 RIKEN cDNA A830012C17 gene ncRNA 27651 D4Sh1 - - 4 51.53 cM DNA segment, Chr 4, Steve Hardies 1 unknown 102632284 Mm.446650 NR_155762 Gm30400 Gm45414 - 10 C1|10 predicted gene, 30400 ncRNA 100141474 Mm.482426 NM_001289118 ENSMUSG00000047988 4933428G20Rik - - 11|11 D RIKEN cDNA 4933428G20 gene protein-coding 105243316 Mm.387227 Gm39273 - - 8|8 predicted gene, 39273 ncRNA 61108 D2Mit473 - - 2 40.95 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 473 unknown 105245549 XR_873639 Gm40993 - - 13 C1|13 predicted gene, 40993 ncRNA 171261 Mm.377215 NM_134227 ENSMUSG00000070815 Vmn1r87 V1rk1 - 7|7 A1 vomeronasal 1 receptor 87 protein-coding 53167 232b10HYACC - - - DNA segment, 232b10HYACC unknown 108167414 XR_001778070 Gm45977 - - 7 B1|7 predicted gene, 45977 ncRNA 100463510 Gm20593 Cct6a-3p - 18 E3|18 52.91 cM chaperonin containing Tcp1, subunit 6a (zeta) pseudogene pseudo 66047 Mm.43397 NM_025317 ENSMUSG00000034932 Mrpl54 0610008M19Rik|D10Sut1e - 10 C1|10 39.72 cM mitochondrial ribosomal protein L54 protein-coding 102635961 XR_882325 Gm28504 - - Y B|Y predicted gene 28504 ncRNA 66487 Mm.379116 NM_001308091 ENSMUSG00000058351 Smim4 2010107H07Rik|Gm41122 - 14|14 B small integral membrane protein 4 protein-coding 320455 A630036H22Rik - - 13|13 RIKEN cDNA A630036H22 gene protein-coding 100040252 Gm12742 - - 4|4 C7 predicted gene 12742 pseudo 665402 Gm7623 EG665402 - 18|18 E4 predicted gene 7623 pseudo 56295 Mm.347915 NM_019814 ENSMUSG00000038412 Higd1a 2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1 - 9|9 F4 HIG1 domain family, member 1A protein-coding 667754 Mm.28191 NR_033726 Ces2d-ps Gm9756 - 8|8 D3 carboxylesterase 2D, pseudogene pseudo 100043608 Gm4549 - - 3 F2.3|3 predicted gene 4549 protein-coding 258214 Mm.454498 NM_001011870 ENSMUSG00000096705 Olfr1329 MOR259-2 - 4|4 D2.1 olfactory receptor 1329 protein-coding 105245349 Gm40821 - - 11|11 predicted gene, 40821 protein-coding 621580 Mm.389537 NM_001177580 ENSMUSG00000094695 Gm21953 Gm13308 - 4 A5|4 predicted gene, 21953 protein-coding 100041348 Gm12513 - - 4|4 B3 predicted gene 12513 pseudo 64436 Mm.330070 NM_033134 ENSMUSG00000026925 Inpp5e 1200002L24Rik|72kDa|mKIAA0123 - 2|2 A3 inositol polyphosphate-5-phosphatase E protein-coding 21271 T(7;19)145H T145H - - reciprocal translocation, Chr 7 and 19, Harwell 145 other 100035068 W10q16 - - - weight 10 weeks QTL 16 unknown 100416101 Gm17915 - - 12|12 A1.1 peroxiredoxin 1 pseudogene pseudo 102640208 XR_384469 Gm36331 - - 15 F3|15 predicted gene, 36331 ncRNA 242557 Mm.241663 NM_175029 ENSMUSG00000028550 Atg4c Apg4-C|Apg4c|Atg4cl|Autl1 - 4|4 C6 autophagy related 4C, cysteine peptidase protein-coding 665959 Gm7863 EG665959 - 9|9 D ribosomal protein L7A pseudogene pseudo 217378 Mm.271656 NM_153082 ENSMUSG00000020657 Dnajc27 AI639580|C330021A05Rik|Rabj|Rbj - 12|12 A1.1 DnaJ heat shock protein family (Hsp40) member C27 protein-coding 434249 Mm.334269 XR_869992 Gm5602 EG434249 - 7|7 F3 predicted gene 5602 unknown 100043188 Mm.304029 NM_001146107 ENSMUSG00000074424 Gm10696 - - 3|3 F2.1 predicted gene 10696 protein-coding 100040898 Gm13292 - - 2|2 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100042560 Trav11n Gm3904 - 14|14 C2 T cell receptor alpha variable 11N other 111803 Iapls3-35 - - - intracisternal A particle, lymphocyte specific 3-35 other 74064 NR_153848 4933406J09Rik Gm44293 - 6|6 G1 RIKEN cDNA 4933406J09 gene ncRNA 622229 Mm.486084 NR_033591 Gm6300 EG622229 - 3|3 A1 solute carrier family 7 (cationic amino acid transporter, y+ system), member pseudogene pseudo 100039519 Gm2286 - - X|X F2 predicted gene 2286 pseudo 100861626 Gm21933 - - 13|13 predicted gene, 21933 protein-coding 194740 Gm40 - - X|X A3.3 predicted pseudogene 40 pseudo 111834 Iapls1-68 - - - intracisternal A particle, lymphocyte specific 1-68 other 415119 D6Slab17 - - - DNA segment, Chr 6, Schoepfer Lab 17 unknown 110120483 LOC110120483 - - - VISTA enhancer mm1489 biological-region 330776 Mm.155440 NM_207259 Gm10283 EG330776 - 8 B3.1|8 predicted gene 10283 unknown 105244830 Gm40366 - - 6|6 predicted gene, 40366 ncRNA 98258 Mm.28438 NM_172054 ENSMUSG00000058407 Txndc9 AI098020|APACD - 1|1 B thioredoxin domain containing 9 protein-coding 231713 Mm.33919 NM_172722 ENSMUSG00000042719 Naa25 4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20 - 5|5 F N(alpha)-acetyltransferase 25, NatB auxiliary subunit protein-coding 380713 Mm.10486 NM_001004157 ENSMUSG00000038188 Scarf1 AA986099|SREC|SREC-I|mKIAA0149 - 11|11 B5 scavenger receptor class F, member 1 protein-coding 442803 Mm.65403 XM_001473764 ENSMUSG00000053181 A830005F24Rik - - 13|13 A5 RIKEN cDNA A830005F24 gene protein-coding 102632248 XR_374981 Gm30378 - - 2 F1|2 predicted gene, 30378 ncRNA 102639657 Gm35916 - - 9|9 predicted gene, 35916 ncRNA 100416080 Gm17910 - - 8|8 C3 nucleophosmin 1 pseudogene pseudo 105245805 Gm41195 - - 14|14 predicted gene, 41195 ncRNA 102632687 XR_384751 Gm30693 - - 16 B1|16 predicted gene, 30693 ncRNA 606492 Gm15621 EG606492|Ppia - 5 F|5 peptidylprolyl isomerase A pseudogene pseudo 208372 Mm.215164 NM_139152 ENSMUSG00000067081 Asb18 Asb-18 - 1|1 D ankyrin repeat and SOCS box-containing 18 protein-coding 111889 Iap5rb3 - - - intracisternal A-type particle, U5 region, SINE repeat b-3 other 620949 Dph3b-ps Dph3b|EG620949|Gm6193 - 13|13 D1 diphthamide biosynthesis 3, pseudogene pseudo 111942 Iap5rc12 - - - intracisternal A-type particle, U5 region, SINE repeat c-12 other 100035256 Mohg1 - - 2 45.25 cM modifier of hg 1 unknown 102638443 XR_390388 Gm35008 - - 4 A1|4 predicted gene, 35008 ncRNA 76572 Mm.128134 NM_029660 ENSMUSG00000073894 Rbmxl2 1700012H05Rik|Hnrnpg-t - 7|7 E3 RNA binding motif protein, X-linked-like 2 protein-coding 100316685 NR_035444 ENSMUSG00000084458 Mir1907 Mirn1907|mmu-mir-1907 - 15 C|15 19.19 cM microRNA 1907 ncRNA 61859 D1Mit373 - - 1 10.92 cM DNA segment, Chr 1, Massachusetts Institute of Technology 373 unknown 60913 D8Mit92 - - 8 74.62 cM DNA segment, Chr 8, Massachusetts Institute of Technology 92 unknown 102640066 XR_880575 Gm36223 - - 5 F|5 predicted gene, 36223 ncRNA 105246570 Gm41843 - - 19|19 predicted gene, 41843 ncRNA 100009698 Gm14504 - - X A1.1|X pyruvate kinase, muscle pseudogene pseudo 102637279 Gm13132 - - 4|4 83.93 cM predicted gene 13132 pseudo 110435 Evi28 - - - ecotropic viral integration site 28 protein-coding 110622 H2-T12 H-2T12 - - histocompatibility 2, T region locus 12 protein-coding 70810 Mm.268173 NM_133730 ENSMUSG00000035831 Krt25 4631426H08Rik|Ka38|Krt25a|mIRSa1 - 11|11 D keratin 25 protein-coding 258123 Mm.376123 NM_001011842 ENSMUSG00000096273 Olfr1474 MOR202-26P|MOR202-42 - 19|19 A olfactory receptor 1474 protein-coding 27491 D0Kist4 - - - DNA segment, KIST 4 unknown 13682 Mm.260084 NM_013506 ENSMUSG00000022884 Eif4a2 4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II - 16 B1|16 13.93 cM eukaryotic translation initiation factor 4A2 protein-coding 52174 Mm.244748 NM_025667 ENSMUSG00000028857 Tmem222 5730406H10Rik|AA409341|D4Ertd196e - 4 D2.3|4 66.25 cM transmembrane protein 222 protein-coding 320973 Mm.384284 NR_040334 D330023K18Rik - - 2|2 B RIKEN cDNA D330023K18 gene ncRNA 108167757 XR_001779643 Gm46180 - - 10 D2|10 predicted gene, 46180 ncRNA 14933 Mm.246682 NM_008194 ENSMUSG00000025059 Gk D930012N15Rik|Gyk - X C1|X 39.32 cM glycerol kinase protein-coding 100043346 Rpl10-ps3 Gm10041 - 9|9 A5.3 ribosomal protein L10, pseudogene 3 pseudo 627317 XM_011249801 Gm6745 EG627317 - 5|5 A3 predicted gene 6745 protein-coding 105242763 Gm38893 - - 6|6 predicted gene, 38893 ncRNA 65254 Mm.27732 NM_023047 ENSMUSG00000029168 Dpysl5 CRAM|CRMP-5|Crmp5 - 5|5 B1 dihydropyrimidinase-like 5 protein-coding 100169865 Mm.403609 XR_001781892 Gm10914 - - 16 A1|16 predicted gene 10914 unknown 105463124 Mm.432448 NR_131206 ENSMUSG00000115620 Gm45924 Borg - 15 B3.1|15 predicted gene, 45924 ncRNA 667344 Gm8584 EG667344 - 14|14 A3 predicted gene 8584 pseudo 112356 Cplaq2 - - - circadian period of locomotor activity 2 unknown 493133 Hpdty - - - hindlimb polydactyly unknown 102634103 Gm31765 - - 3|3 predicted gene, 31765 ncRNA 73660 Mm.379226 NM_144532 ENSMUSG00000024842 Cabp4 2410038D05Rik - 19|19 A calcium binding protein 4 protein-coding 258444 Mm.271372 NM_146452 ENSMUSG00000064223 Olfr694 MOR283-9 - 7|7 E3 olfactory receptor 694 protein-coding 102640035 Mm.245982 XR_375352 1700055K11Rik - - 2|2 H4 RIKEN cDNA 1700055K11 gene ncRNA 72578 Mm.46549 NR_045436 ENSMUSG00000038347 2700054A10Rik - - 17 A1|17 RIKEN cDNA 2700054A10 gene ncRNA 667383 Gm650 - - X|X F3 predicted pseudogene 650 protein-coding 108631 Iap5rc22 - - - intracisternal A-type particle, U5 region, SINE repeat c-22 other 27407 Mm.21629 NM_013853 ENSMUSG00000028953 Abcf2 0710005O05Rik|Drr3|E430001O06 - 5|5 A3 ATP-binding cassette, sub-family F (GCN20), member 2 protein-coding 102642818 LOC102642818 - - - kynureninase 2 protein-coding 436164 Gm5750 EG436164 - 10 B4|10 ribosomal protein L7A pseudogene pseudo 53043 CA7.13 - - - DNA segment, CA7.13 unknown 102640551 XR_385047 Gm36587 - - 16 C3.3|16 predicted gene, 36587 ncRNA 53794 D17H21S56 D21S56h - - DNA segment, Chr 17, human D21S56 unknown 257904 Mm.377293 NM_001011750 ENSMUSG00000062042 Olfr294 MOR219-5 - 7|7 D3 olfactory receptor 294 protein-coding 105246015 Gm41380 - - 15|15 predicted gene, 41380 ncRNA 30805 Mm.274590 NM_019687 ENSMUSG00000020334 Slc22a4 Octn1 - 11 B1.3|11 32.07 cM solute carrier family 22 (organic cation transporter), member 4 protein-coding 100042634 Gm3940 - - 1 C1.1|1 ribosomal protein L23A pseudogene pseudo 102640339 XR_383601 Gm36429 - - 14 D3|14 predicted gene, 36429 ncRNA 67564 Mm.41489 NM_026239 ENSMUSG00000033578 Tmem35a 9030603L14Rik|AI841526|PMP52|Tmem35 - X|X E3 transmembrane protein 35A protein-coding 71067 Mm.410793 NR_045342 ENSMUSG00000112500 4933411E08Rik - - 10|10 D2 RIKEN cDNA 4933411E08 gene ncRNA 320246 A730075L09Rik - - 6|6 RIKEN cDNA A730075L09 gene protein-coding 27008 Mm.196480 NM_177461 ENSMUSG00000033039 Micall1 AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668 - 15 E1|15 37.7 cM microtubule associated monooxygenase, calponin and LIM domain containing -like 1 protein-coding 100418109 Gm15376 - - 1|1 D predicted gene 15376 pseudo 665902 Mm.425380 NM_001110316 ENSMUSG00000070828 Zscan4f C330039H09Rik - 7|7 A1 zinc finger and SCAN domain containing 4F protein-coding 67107 Gm9517 Ankrd12|Ankrd12-like - 12|12 F1 predicted gene 9517 pseudo 102632115 XR_388052 Gm30272 - - 8 E1|8 predicted gene, 30272 ncRNA 105522 Mm.37660 NM_001024604 ENSMUSG00000014496 Ankrd28 AI465466|AI604979|E430019N21Rik|mKIAA0379 - 14|14 B ankyrin repeat domain 28 protein-coding 320615 Mm.245500 NM_177208 ENSMUSG00000034973 Dopey1 B130005I07Rik|BC035275|C130028L17|D9Ertd809e - 9 E3.1|9 46.58 cM dopey family member 1 protein-coding 414280 LOC414280 - - X|X uncharacterized LOC414280 unknown 23956 Mm.143717 NM_015750 ENSMUSG00000079434 Neu2 MBS|MSS|MTS - 1|1 D neuraminidase 2 protein-coding 102633208 XR_375670 Gm31095 - - 3 C|3 predicted gene, 31095 ncRNA 52528 D17Rp11e D17Rp11|RP11 - - DNA segment, Chr 17, Roswell Park 11, expressed unknown 75242 Mm.488254 NR_130980 Hmgb4os 4930546G22Rik - 4|4 D2.2 high-mobility group box 4, opposite strand ncRNA 15003 H2-Pa H2-Pa-ps - 17 B1|17 17.98 cM histocompatibility 2, P region alpha locus pseudo 102639647 Mm.405912 XR_874932 ENSMUSG00000115386 Gm35909 - - 14 E2.3|14 predicted gene, 35909 ncRNA 105247010 XR_880705 Gm42194 - - 3 A3|3 predicted gene, 42194 ncRNA 109280011 LOC109280011 Mm106 - - VISTA enhancer mm106 biological-region 668747 Gm9330 EG668747 - 7|7 F3 predicted gene 9330 pseudo 12181 Mm.4283 NM_013481 ENSMUSG00000022557 Bop1 AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124 - 15 D3|15 35.91 cM block of proliferation 1 protein-coding 320638 Mm.404482 NR_110485 A730006G06Rik - - 17|17 C RIKEN cDNA A730006G06 gene ncRNA 62117 D12Mit88 - - 12 23.46 cM DNA segment, Chr 12, Massachusetts Institute of Technology 88 unknown 100039019 XR_390615 Mup-ps12 Gm16002|Gm2009 - 4 B3|4 major urinary protein, pseudogene 12 protein-coding 640340 Mm.333124 Igkv8-16 Igk-V8-16 - 6|6 C1 immunoglobulin kappa variable 8-16 other 105242721 Mm.397448 XR_869274 Gm38863 - - 6 D1|6 predicted gene, 38863 ncRNA 105244724 Gm40282 - - 5|5 predicted gene, 40282 ncRNA 108168450 LOC108168450 - - X E3 mitogen-activated protein kinase 3 pseudogene pseudo 110120555 LOC110120555 - - - VISTA enhancer mm1504 biological-region 170645 Od - - - ovary determining unknown 108542 Ms13-22 Ms13-Hf6 - - minisatellite 13-22 detected by M13 phage probe other 98087 Mm.394376 C87487 - - - expressed sequence C87487 protein-coding 21150 T(2;8)2Wa T2Wa - - reciprocal translocation, Chr 2 and 8, Wageningen 2 other 27419 Mm.95452 NM_013792 ENSMUSG00000001751 Naglu - - 11|11 D alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) protein-coding 16582 Mm.378951 NM_010631 ENSMUSG00000031788 Kifc3 AI325457|BB123200 - 8 C5|8 47.12 cM kinesin family member C3 protein-coding 73346 XR_373460 1700039I01Rik - - 1|1 C2 RIKEN cDNA 1700039I01 gene ncRNA 258690 Mm.377641 NM_146695 ENSMUSG00000063777 Olfr1469 MOR202-11 - 19|19 A olfactory receptor 1469 protein-coding 635803 Gm12757 - - 7|7 B1 ribosomal protein S4, X-linked pseudogene pseudo 14339 Mm.324588 NM_010241 ENSMUSG00000031667 Aktip AL023020|Fif|Ft|Ft1|Fts - 8 C4|8 44.25 cM thymoma viral proto-oncogene 1 interacting protein protein-coding 72805 Mm.443524 NM_028365 ENSMUSG00000021271 Zfp839 2810455K09Rik - 12|12 F1 zinc finger protein 839 protein-coding 625046 Gm6545 EG625046 - 19|19 A family with sequence similarity 111, member A pseudogene pseudo 66090 Mm.27114 NM_025347 ENSMUSG00000042675 Ypel3 0610043B10Rik|1190001G19Rik|Suap - 7|7 F3 yippee like 3 protein-coding 666667 Gm8224 EG666667 - 14|14 C1 predicted gene 8224 protein-coding 102637590 XR_383395 Gm34360 - - 14 C1|14 predicted gene, 34360 ncRNA 269037 Mm.36745 NM_201354 ENSMUSG00000052928 Ctif Gm672 - 18|18 E3 CBP80/20-dependent translation initiation factor protein-coding 16224 In(1)24Rk-p In(1)24Rk|In24Rk - - inversion, Chr 1, Roderick 24, proximal other 269799 Mm.297275 NM_199311 ENSMUSG00000049037 Clec4a1 BC049354|Dcir4 - 6|6 F2 C-type lectin domain family 4, member a1 protein-coding 80743 Mm.276092 NM_030559 ENSMUSG00000027411 Vps16 1810074M16Rik|mVPS16 - 2|2 F1 VSP16 CORVET/HOPS core subunit protein-coding 102632525 Gm21842 - - Y|Y predicted gene, 21842 protein-coding 74617 Mm.34126 NM_029023 ENSMUSG00000000278 Scpep1 2410018F01Rik|4833411K15Rik|AI957256|Risc - 11|11 C serine carboxypeptidase 1 protein-coding 224008 Mm.244703 NM_146068 ENSMUSG00000041974 Spidr 2310008H04Rik|Kiaa0146 - 16|16 A2 scaffolding protein involved in DNA repair protein-coding 73857 Mm.429392 4930429C20Rik - - 14|14 RIKEN cDNA 4930429C20 gene protein-coding 102631580 Gm29882 - - 17|17 predicted gene, 29882 ncRNA 100037282 Mm.29830 NM_001083945 ENSMUSG00000023806 Rsph3b Rshl2b - 17|17 A1 radial spoke 3B homolog (Chlamydomonas) protein-coding 62849 D12Mit205 - - 12 40.48 cM DNA segment, Chr 12, Massachusetts Institute of Technology 205 unknown 211936 Mm.416538 NM_177600 ENSMUSG00000045106 Ccdc73 2210415I11Rik|4931417A20|AV080665|BC095976 - 2|2 E2 coiled-coil domain containing 73 protein-coding 112431 Lrncs2 - - - learning-conditioned stimulus 2 unknown 112198 Wt6q3 - - - body weight, 6 weeks, QTL 3 unknown 56724 Mm.109329 NM_019936 ENSMUSG00000024146 Cript 1200020A08Rik|AA589469 - 17|17 E4 cysteine-rich PDZ-binding protein protein-coding 72547 2700008L21Rik - - 11|11 RIKEN cDNA 2700008L21 gene protein-coding 21251 T(7;12)19Ad T19Ad - - reciprocal translocation, Chr 7 and 12, Adler 19 other 20776 Mm.390229 NM_146260 ENSMUSG00000049555 Tmie 5131400L21Rik|Mm.87012|sr - 9 F2|9 60.79 cM transmembrane inner ear protein-coding 100041788 Gm14620 - - X|X A5 predicted gene 14620 pseudo 545370 Mm.379425 NM_001024720 ENSMUSG00000066842 Hmcn1 EG545370|FIBL-6|Gm201 - 1|1 G1 hemicentin 1 protein-coding 100036011 Bmd25 - - - bone mineral density 25 unknown 20091 Mm.391785 NM_016959 ENSMUSG00000028081 Rps3a1 Rps3a - 3|3 F1 ribosomal protein S3A1 protein-coding 108167573 Gm45574 - - 8 C1|8 40S ribosomal protein S25 pseudogene pseudo 72030 Mm.426148 NR_038168 ENSMUSG00000085114 1600025M17Rik Gm394 - X|X A6 RIKEN cDNA 1600025M17 gene ncRNA 21247 T(7;11)64H T64H - - reciprocal translocation, Chr 7 and 11, Harwell 64 other 102639729 XR_384465 Gm35972 - - 15 F2|15 predicted gene, 35972 ncRNA 98952 Mm.4065 NM_153560 ENSMUSG00000039157 Fam102a AI426465|C230093N12Rik|Eeig1 - 2|2 B family with sequence similarity 102, member A protein-coding 668179 Gm9023 EG668179 - 3|3 F1 nischarin pseudogene pseudo 102635025 XR_385916 Gm32465 - - 17 E5|17 predicted gene, 32465 ncRNA 227683 Mm.245948 NM_178693 ENSMUSG00000026798 Coq4 D2Ertd97e - 2 B|2 20.62 cM coenzyme Q4 protein-coding 100312475 Mm.480294 NM_001167538 ENSMUSG00000094735 Vmn1r95 Gm17331 - 7 A3|7 vomeronasal 1 receptor, 95 protein-coding 19561 Rb(5.10)3Nam Rb3Nam - - Robertsonian translocation, Chr 5 and 10, Namur 3 other 62762 D17Mit175 - - 17 17.25 cM DNA segment, Chr 17, Massachusetts Institute of Technology 175 unknown 102638679 XR_375722 Gm35184 - - 3 E1|3 predicted gene, 35184 ncRNA 109841 Ly14 Ly-14 - - lymphocyte antigen 14 protein-coding 62948 D11Mit329 - - - DNA Segment, Chr 11, Massachusetts Institute of Technology 329 unknown 102634140 XR_375678 Gm31796 - - 3 C|3 predicted gene, 31796 ncRNA 108168077 XR_001780891 Gm46410 - - 13 A3.3|13 predicted gene, 46410 ncRNA 100041276 Gm15388 - - 1|1 E2.1 ribosomal protein S6 pseudogene pseudo 13437 Mm.24680 NM_016878 ENSMUSG00000026209 Dnpep AA407814 - 1|1 C4 aspartyl aminopeptidase protein-coding 102638424 XR_382806 Gm34995 - - 13 D1|13 predicted gene, 34995 ncRNA 14409 Mm.6227 NM_008076 ENSMUSG00000023267 Gabrr2 - - 4 A5|4 14.64 cM gamma-aminobutyric acid (GABA) C receptor, subunit rho 2 protein-coding 108168584 XM_017318788 LOC108168584 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 99738 Mm.101976 NM_145922 ENSMUSG00000027895 Kcnc4 AI850292|KSHIIIC|Kcr2-4|Kv3.4 - 3 F2.3|3 46.83 cM potassium voltage gated channel, Shaw-related subfamily, member 4 protein-coding 100035634 Ath22 - - - atherosclerosis 22 unknown 102465557 NR_105890 ENSMUSG00000105932 Mir6925 mmu-mir-6925 - 11|11 B3 microRNA 6925 ncRNA 238803 Mm.343207 NM_001004149 ENSMUSG00000050919 Zfp366 DC-SCRIPT|Znf366 - 13|13 D1 zinc finger protein 366 protein-coding 73869 4930414H07Rik - - 2|2 RIKEN cDNA 4930414H07 gene protein-coding 102635656 XR_387424 Gm32940 - - 1 E4|1 predicted gene, 32940 ncRNA 228966 Mm.472736 NM_001085501 ENSMUSG00000049999 Ppp1r3d 2610024M03Rik|Gm359 - 2|2 H4 protein phosphatase 1, regulatory subunit 3D protein-coding 24080 Tcra-V22.3 - - - T cell receptor alpha, variable 22.3 other 446100 Vhl-ps1 VLP|Vhll|mVLP - 17 B1|17 von Hippel-Lindau tumor suppressor-like, pseudogene 1 pseudo 102636693 XR_373573 Gm33693 - - 1 C4|1 predicted gene, 33693 ncRNA 332131 Mm.325105 NM_212487 ENSMUSG00000050463 Krt78 2310030B04Rik|Kb40 - 15|15 F2 keratin 78 protein-coding 100043416 NM_001004167 ENSMUSG00000093846 Gm4425 EG432637|Gm5433 - 12 A1.3|12 KRAB-domain protein pseudogene pseudo 18072 Mm.137286 NM_178777 ENSMUSG00000048540 Nhlh2 6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34 - 3|3 F2.2 nescient helix loop helix 2 protein-coding 102635643 XR_390867 Gm32930 - - 4 D3|4 predicted gene, 32930 ncRNA 224902 Mm.214973 NM_001029979 ENSMUSG00000042625 Safb2 AA389433|AI255170|mKIAA0138 - 17|17 D scaffold attachment factor B2 protein-coding 100417579 LOC100417579 - - X|X E1 baculoviral IAP repeat-containing 6 pseudogene pseudo 75726 4933407A17Rik - - 14|14 RIKEN cDNA 4933407A17 gene protein-coding 666164 Gm7961 EG666164 - 5|5 E3 predicted gene 7961 pseudo 105242880 XR_881899 Gm38968 - - 7 A3|7 predicted gene, 38968 ncRNA 100038991 Gm2000 - - 1 G3|1 ribosomal protein L35 pseudogene pseudo 226432 Mm.271642 NM_153774 ENSMUSG00000041879 Ipo9 0710008K06Rik|AI845704|C78347|Imp9|Ranbp9 - 1|1 E4 importin 9 protein-coding 723891 NR_029786 ENSMUSG00000065416 Mir19a Mirn19a|mir-19a|mmu-mir-19a - 14|14 E4 microRNA 19a ncRNA 170762 Mm.295168 NM_133227 ENSMUSG00000022142 Nup155 D930027M19Rik|mKIAA0791 - 15|15 A1 nucleoporin 155 protein-coding 17394 Mm.16415 NM_008611 ENSMUSG00000005800 Mmp8 BB138268 - 9|9 A1 matrix metallopeptidase 8 protein-coding 108169162 XR_001785352 Gm46972 - - 6 E3|6 predicted gene, 46972 ncRNA 23964 Mm.439889 NM_011856 ENSMUSG00000049336 Tenm2 Odz2|Odz3|Ten-2|Ten-m2 - 11 A4-A5|11 21.96 cM teneurin transmembrane protein 2 protein-coding 77941 Mm.447277 A930001M01Rik - - 15|15 RIKEN cDNA A930001M01 gene protein-coding 21036 T(10;12)38Ad T38Ad - - reciprocal translocation, Chr 10 and 12, Adler 38 other 635243 Gm7153 EG635243 - X A7.3|X predicted gene 7153 pseudo 102638642 XR_882316 ENSMUSG00000099855 Gm28486 - - Y A2|Y predicted gene 28486 ncRNA 668675 Gm9299 EG668675 - 7 F3|7 armadillo repeat containing, X-linked 3 pseudogene pseudo 105246924 Gm42119 - - 5|5 predicted gene, 42119 ncRNA 73469 Mm.262859 NM_175201 ENSMUSG00000035696 Rnf38 1700065B19Rik|2610202O07Rik|AA673263|Oip1 - 4|4 B1 ring finger protein 38 protein-coding 61628 D8Mit252 - - 8 44.25 cM DNA segment, Chr 8, Massachusetts Institute of Technology 252 unknown 78080 Mm.378004 9230114J08Rik - - 3|3 F2.1 RIKEN cDNA 9230114J08 gene unknown 102363 Mm.403518 BB157005 - - - expressed sequence BB157005 unknown 62478 D10Mit101 - - 10 64.65 cM DNA segment, Chr 10, Massachusetts Institute of Technology 101 unknown 61426 D5Mit230 - - 5 19.28 cM DNA segment, Chr 5, Massachusetts Institute of Technology 230 unknown 102637979 Gm34658 - - 18 A2|18 predicted gene, 34658 pseudo 66717 Mm.42368 NM_025725 ENSMUSG00000050677 Ccdc96 4921513E08Rik - 5|5 B3 coiled-coil domain containing 96 protein-coding 20517 Mm.594 NM_009202 ENSMUSG00000023829 Slc22a1 Lx1|Oct1|Orct|Orct1 - 17 A1|17 8.63 cM solute carrier family 22 (organic cation transporter), member 1 protein-coding 665317 Gm7582 EG665317 - 1|1 C5 component of Sp100-rs pseudogene pseudo 102631939 Mm.411650 XR_390822 Gm12977 - - 4 D2.3|4 66.39 cM predicted gene 12977 ncRNA 105245665 Gm3542 100041565|100041848|Gm3408 - 14|14 A1 predicted gene 3542 pseudo 75753 Mm.3848 NM_029416 ENSMUSG00000048626 Klf17 7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393 - 4 D2.1|4 53.46 cM Kruppel-like factor 17 protein-coding 623430 Gm6430 EG623430 - 1 D|1 heterogeneous nuclear ribonucleoprotein F pseudogene pseudo 52387 Mm.36863 D5Ertd700e - - 5 33.94 cM DNA segment, Chr 5, ERATO Doi 700, expressed unknown 433197 Mm.105412 XR_877523 Gm29677 - - 18|18 E2 predicted gene, 29677 unknown 67321 Mm.245802 NR_033785 ENSMUSG00000100297 1700044K03Rik - - 18|18 C RIKEN cDNA 1700044K03 gene ncRNA 100042811 NM_001111297 Mrps36-ps2 Gm10078 - 7 E3|7 mitochondrial ribosomal protein S36, pseudogene 2 pseudo 110226 Igh-Gte - - - immunoglobulin heavy chain Gte other 102467301 n-TEctc9 n-Te9 - 10 A4|10 nuclear encoded tRNA glutamic acid 9 (anticodon CTC) tRNA 102634422 XR_001785428 Gm32007 - - 6 A3.3|6 predicted gene, 32007 ncRNA 76123 Mm.226941 NM_029522 ENSMUSG00000027883 Gpsm2 6230410J09Rik|LGN|Pins - 3|3 F3 G-protein signalling modulator 2 (AGS3-like, C. elegans) protein-coding 111853 Iapls1-43 - - - intracisternal A particle, lymphocyte specific 1-43 other 67429 Mm.490404 NM_026149 ENSMUSG00000038736 Nudcd1 4921532K09Rik|AA407246|AW260430|AW556235|CML66-L|Cml66 - 15|15 B3.2 NudC domain containing 1 protein-coding 668143 Gm8999 EG668143 - 6|6 C2 heterogeneous nuclear ribonucleoprotein C pseudogene pseudo 64010 Mm.390480 NM_022028 ENSMUSG00000021067 Sav1 1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4 - 12|12 C2 salvador family WW domain containing 1 protein-coding 52575 Mm.288742 NM_029092 ENSMUSG00000044763 Trmt10c 1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1 - 16 C1.1|16 33.79 cM tRNA methyltransferase 10C protein-coding 100041651 Gm3453 - - 14 A1|14 predicted gene 3453 protein-coding 381582 Mm.379515 NM_001101506 ENSMUSG00000084845 Tmem240 EG381582|Gm5151 - 4|4 E2 transmembrane protein 240 protein-coding 108168760 XR_001783307 LOC108168760 - - 2 C1.1 uncharacterized LOC108168760 ncRNA 102640774 Gm36761 - - 6|6 predicted gene, 36761 ncRNA 106050035 Macs1 - - - mammal amphibian conserved sequence 1 biological-region 13480 Mm.422657 NM_010072 ENSMUSG00000078919 Dpm1 AI118379|AI194292 - 2|2 H3 dolichol-phosphate (beta-D) mannosyltransferase 1 protein-coding 100036215 Ltsd1 - - 18 21.09 cM lung tumor shape-determining 1 unknown 67072 Mm.78875 NM_025950 ENSMUSG00000024780 Cdc37l1 2700033A15Rik|BB159850|Cdc37l|Harc - 19|19 C1 cell division cycle 37-like 1 protein-coding 18817 Mm.16525 NM_011121 ENSMUSG00000030867 Plk1 Plk|STPK13 - 7 F2|7 65.52 cM polo like kinase 1 protein-coding 16162 Mm.188337 NM_008354 ENSMUSG00000018341 Il12rb2 A930027I18Rik|IL-12RB2|Ifnm - 6 C1|6 30.81 cM interleukin 12 receptor, beta 2 protein-coding 102637393 LOC102637393 - - X D alpha-enolase pseudogene pseudo 100379608 Gm15622 - - - predicted gene 15622 protein-coding 105243130 Gm39135 - - 8|8 predicted gene, 39135 ncRNA 105243747 Gm39553 - - Y|Y predicted gene, 39553 protein-coding 111149 Odc-rs12 Odc-12 - - ornithine decarboxylase, related sequence 12 pseudo 319391 Mm.417684 D230014I24Rik - - 6|6 RIKEN cDNA D230014I24 gene protein-coding 101254 AU022697 - - - expressed sequence AU022697 unknown 26389 Ifi202c - - - interferon activated gene 202C protein-coding 12867 Mm.378898 NM_007749 ENSMUSG00000017778 Cox7c COXVIIc|Cox7c1 - 13|13 C3 cytochrome c oxidase subunit VIIc protein-coding 22174 Mm.2901 NM_019392 ENSMUSG00000027298 Tyro3 AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1 - 2 E5|2 59.97 cM TYRO3 protein tyrosine kinase 3 protein-coding 665879 Gm7836 EG665879 - 7|7 A1 predicted gene 7836 pseudo 68031 Mm.28930 NM_026518 ENSMUSG00000038876 Rnf146 2610509H23Rik|Iduna - 10|10 A4 ring finger protein 146 protein-coding 100417119 Gm18405 - - 12|12 F1 peptidyl prolyl isomerase H pseudogene pseudo 211208 Mm.300684 NM_001033241 ENSMUSG00000062791 Gm382 - - X|X E3 predicted gene 382 protein-coding 13218 Mm.304264 NM_007844 ENSMUSG00000074437 Defa29 2010300L12Rik|2010319H24Rik|CRS1C|CRS1C-2|CRS1C-4|CRS1C-5|Defa-rs1|Defcr-rs1 - 8 A2|8 10.35 cM defensin, alpha, 29 protein-coding 631145 Mm.159201 XM_011247703 Fam90a1b 4932442L08Rik - X|X C3 family with sequence similarity 90, member A1B protein-coding 667215 Mm.480260 NM_001166740 ENSMUSG00000095309 Vmn1r125 EG667215|Gm8519 - 7 A3|7 vomeronasal 1 receptor 125 protein-coding 18092 Mm.390691 NM_010920 ENSMUSG00000044186 Nkx2-6 AV044928|Nkx-2.6|Nkx2.6|Tix|tinman - 14 D2|14 36.01 cM NK2 homeobox 6 protein-coding 100041912 Gm15226 - - X|X F5 predicted gene 15226 protein-coding 102635836 XR_383785 Gm33077 - - 14 E4|14 predicted gene, 33077 ncRNA 100384870 Gm11257 - - 4 C3|4 36.63 cM cysteine-rich secretory protein 1 pseudogene pseudo 51864 D2Ertd173e - - 2 97.88 cM DNA segment, Chr 2, ERATO Doi 173, expressed unknown 102633544 Mm.404486 Gm31343 - - 8|8 predicted gene, 31343 ncRNA 230025 Mm.208541 NM_001080771 ENSMUSG00000040478 Prdm13 - - 4|4 A3 PR domain containing 13 protein-coding 102633274 XR_001784054 LOC102633274 - - 3 A2 WW domain-binding protein 5-like pseudo 66140 Mm.45008 NM_025377 ENSMUSG00000020492 Ska2 1110001A07Rik|C78640|Fam33a - 11|11 C spindle and kinetochore associated complex subunit 2 protein-coding 105247044 XR_880865 Gm42222 - - 5 A3|5 predicted gene, 42222 ncRNA 114263 Manz8 QTL-C11.2 - - mandible size 8 unknown 66768 Mm.29409 NM_025755 ENSMUSG00000029089 Pacrgl 4933428G09Rik - 5|5 B3 PARK2 co-regulated-like protein-coding 102633131 XR_874177 Gm31035 - - 14 A1|14 predicted gene, 31035 protein-coding 100126875 Mm.387886 Gm10067 - - - predicted gene 10067 unknown 100041328 Gm12540 - - 3|3 B 28S ribosomal protein S33, mitochondrial-like pseudo 96874 C77874 - - - expressed sequence C77874 protein-coding 21833 Mm.265917 NM_178060 ENSMUSG00000058756 Thra 6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha - 11 D|11 62.58 cM thyroid hormone receptor alpha protein-coding 102632514 Mm.365768 XR_374338 Gm13479 - - 2 B|2 27.37 cM predicted gene 13479 ncRNA 72275 Mm.441142 NM_028179 ENSMUSG00000030587 2200002D01Rik 2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2 - 7|7 B1 RIKEN cDNA 2200002D01 gene protein-coding 102632161 XR_373489 Gm30308 - - 1 C3|1 predicted gene, 30308 ncRNA 102122 Mm.250425 NM_028221 ENSMUSG00000031774 Fam192a 1700001O11Rik|2310065K24Rik|AI596259|Nip30 - 8|8 C5 family with sequence similarity 192, member A protein-coding 606732 Gm13458 Magmas-ps - 2|2 B mitochondria-associated protein involved in granulocyte-macrophage colony-stimulating factor signal transduction pseudogene pseudo 74951 Mm.60678 NR_040737 ENSMUSG00000111303 4930502A04Rik - - 9|9 C RIKEN cDNA 4930502A04 gene ncRNA 74377 Mm.75856 NM_028902 ENSMUSG00000002076 Hsf2bp 4932437G14Rik - 17|17 B1 heat shock transcription factor 2 binding protein protein-coding 210719 Mm.257186 NM_177595 ENSMUSG00000061013 Mkx 9430023B20Rik|Irxl1 - 18 A1|18 4.53 cM mohawk homeobox protein-coding 100316697 NR_035468 ENSMUSG00000088985 Mir1946a mmu-mir-1946a - 16 B2|16 22.49 cM microRNA 1946a ncRNA 268996 Mm.31761 NM_009280 ENSMUSG00000037013 Ss18 D130059H17|Ssxt|Syt - 18|18 A1 SS18, nBAF chromatin remodeling complex subunit protein-coding 208080 Mm.291862 NM_001111145 ENSMUSG00000086228 Ubap1l Gm514 - 9|9 C ubiquitin-associated protein 1-like protein-coding 114285 Manh18 QTL-SH12.2 - - mandible shape 18 unknown 73451 Mm.129453 NM_028543 ENSMUSG00000067430 Zfp763 1700065O13Rik|AI839635 - 17|17 B1 zinc finger protein 763 protein-coding 109279914 LOC109279914 Mm144 - - VISTA enhancer mm144 biological-region 103949 NR_052008 ENSMUSG00000099250 Rn7s2 Gm26191|Rn7s-2 - 12 C2|12 7S RNA 2 scRNA 11894 Asp2 asp|asp-2 - - audiogenic seizure prone 2 unknown 102632947 Mm.332195 XR_001784768 Gm15731 - - 5 A1|5 3.38 cM predicted gene 15731 ncRNA 71163 Mm.440493 NM_027703 ENSMUSG00000030604 Zfp626 4833408D11Rik|4933426I21Rik|7630402I04Rik - 7|7 A3 zinc finger protein 626 protein-coding 53169 MHAa83a1 - - - DNA segment, YAC MHAa83a1 unknown 102465631 NR_106009 ENSMUSG00000106581 Mir7042 mmu-mir-7042 - 6|6 E3 microRNA 7042 ncRNA 667241 Gm8534 EG667241 - X|X F3 predicted gene 8534 pseudo 105242895 XR_881928 Gm38979 Gm44631 - 7 B1|7 predicted gene, 38979 ncRNA 67412 Mm.390264 NM_026138 ENSMUSG00000038916 Soga3 6330407J23Rik - 10|10 A4 SOGA family member 3 protein-coding 100534309 Gm21928 - - X|X F2 predicted gene, 21928 pseudo 100534353 LOC100534353 - - 11|11 A4 coiled-coil domain containing 47 pseudogene pseudo 100049168 Gm10392 - - 11|11 B5 predicted gene 10392 unknown 102635078 XR_373299 Gm32504 - - 1 B|1 predicted gene, 32504 ncRNA 258962 Mm.246542 NM_146960 ENSMUSG00000094819 Olfr53 IE12|MOR253-5 - 7|7 F4 olfactory receptor 53 protein-coding 320312 Mm.374890 NR_040452 ENSMUSG00000087305 A430035B10Rik 2810488G03Rik - 6|6 A1 RIKEN cDNA A430035B10 gene ncRNA 102640919 XR_387475 Gm25279 - - 1 G2|1 predicted gene, 25279 ncRNA 100416701 Gm10988 - - 7|7 B1 zinc finger protein 334 pseudogene pseudo 27966 Mm.239997 NM_145620 ENSMUSG00000041506 Rrp9 55kDa|D19435|D9Wsu10e|Rnu3ip2|U3-55k - 9 F1|9 57.59 cM RRP9, small subunit (SSU) processome component, homolog (yeast) protein-coding 68294 Mm.34564 NM_026660 ENSMUSG00000001082 Mfsd10 0610009O03Rik|Tetran - 5|5 B2 major facilitator superfamily domain containing 10 protein-coding 319996 Mm.292109 NM_177054 ENSMUSG00000060227 Casc4 D130060C09Rik|VGFG2573 - 2|2 E5 cancer susceptibility candidate 4 protein-coding 108167601 XM_017313131 Gm28363 - - 1 E2.3|1 predicted gene 28363 protein-coding 100505096 Mm.327348 NM_001270555 ENSMUSG00000094362 Defa33 Gm21002 - 8 A2|8 defensin, alpha, 33 protein-coding 27655 D1Dau1 - - - DNA segment, Chr 1, DA Underhill 1 unknown 114604 Mm.328741 NM_144789 ENSMUSG00000014039 Prdm15 C21orf83|E130018M06Rik|ORF62|Zfp298 - 16|16 C4 PR domain containing 15 protein-coding 320333 Mm.350858 NM_177135 ENSMUSG00000096039 D830030K20Rik - - 14|14 A1 RIKEN cDNA D830030K20 gene protein-coding 85081 D8Mit1007 D9Mit92 - 8 55.26 cM DNA segment, Chr 8, Massachusetts Institute of Technology 1007 unknown 18145 Mm.3484 NM_008720 ENSMUSG00000024413 Npc1 A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm - 18 A1|18 6.15 cM NPC intracellular cholesterol transporter 1 protein-coding 102632034 XR_388195 Gm30209 - - 8 E2|8 predicted gene, 30209 ncRNA 61777 D3Mit259 - - 3 71.03 cM DNA segment, Chr 3, Massachusetts Institute of Technology 259 unknown 114528 Bomd2 Bmd6 - - bone mineral density 2 unknown 100035095 Hypism - - 13 26.25 cM hyperinsulinemia unknown 243303 Mm.425297 XR_868629 Gm454 - - 5|5 G2 predicted gene 454 unknown 111566 Xmv25 Xmv-25 - - xenotropic murine leukemia virus 25 other 105245628 XR_873948 Gm41057 - - 13 D2.1|13 predicted gene, 41057 ncRNA 217692 Mm.261333 NM_172579 ENSMUSG00000042700 Sipa1l1 4931426N11Rik|AW213287|Spar|mKIAA0440 - 12|12 D1 signal-induced proliferation-associated 1 like 1 protein-coding 619300 Mm.384092 NR_152166 6430553K19Rik - - 16|16 B5 RIKEN cDNA 6430553K19 gene ncRNA 64244 NR_033778 ENSMUSG00000096475 Snord116l1 Pwcr1l1 - 7 B5|7 34.03 cM small nucleolar RNA, C/D box 116-like 1 snoRNA 100040598 Gm2861 - - 5 E3|5 predicted gene 2861 protein-coding 102465596 NR_105953 ENSMUSG00000098568 Mir6987 Gm27891|mmu-mir-6987 - 19|19 A microRNA 6987 ncRNA 102467363 n-TFgaa7 n-Tf7 - 5 G1.1|5 nuclear encoded tRNA pheylalanine 7 (anticodon GAA) tRNA 102634976 XR_383383 Gm32427 - - 14 C1|14 predicted gene, 32427 ncRNA 628926 Mm.429066 Gm16489 - - 17 C|17 predicted gene 16489 protein-coding 102633867 Mm.351514 NR_152729 ENSMUSG00000111657 Gm31592 - - 10 C2|10 predicted gene, 31592 ncRNA 61802 D2Mit398 - - 2 61.76 cM DNA segment, Chr 2, Massachusetts Institute of Technology 398 unknown 61403 D5Mit161 - - 5 65.34 cM DNA segment, Chr 5, Massachusetts Institute of Technology 161 unknown 85117 D5Mit1003 D1Mit129 - 5 31.65 cM DNA segment, Chr 5, Massachusetts Institute of Technology 1003 unknown 98365 Mm.150050 NM_029612 ENSMUSG00000026548 Slamf9 2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001 - 1|1 H3 SLAM family member 9 protein-coding 100040854 Mm.472683 NM_001113736 ENSMUSG00000070616 Gm13040 - - 4|4 E1 predicted gene 13040 protein-coding 53617 Mm.37952 NM_016880 ENSMUSG00000048013 Krt35 AI662400|Ha5|Krt1-24|Krtha5 - 11|11 D keratin 35 protein-coding 100416258 Gm12518 - - 4|4 B3 predicted gene 12518 pseudo 108067 Mm.34612 NM_175135 ENSMUSG00000028683 Eif2b3 1190002P15Rik - 4|4 D1 eukaryotic translation initiation factor 2B, subunit 3 protein-coding 22051 Mm.27063 NM_011639 ENSMUSG00000023348 Trip6 - - 5|5 G2 thyroid hormone receptor interactor 6 protein-coding 74255 Mm.289929 NM_021535 ENSMUSG00000028409 Smu1 2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd - 4|4 A5 smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) protein-coding 68396 Mm.154782 NM_023455 ENSMUSG00000030004 Nat8 0610037O16Rik|ATase2|CCNAT|Cml4 - 6|6 C3 N-acetyltransferase 8 (GCN5-related) protein-coding 108168647 XM_017318858 LOC108168647 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 74382 4932432N04Rik - - 9|9 A5.3 RIKEN cDNA 4932432N04 gene protein-coding 192212 Mm.34171 NM_138750 ENSMUSG00000027376 Prom2 AI507243|Prom-rp - 2|2 F1 prominin 2 protein-coding 19988 Mm.262021 NM_011290 ENSMUSG00000029614 Rpl6 Taxreb107 - 5|5 F ribosomal protein L6 protein-coding 100504049 Mm.474515 NR_152254 ENSMUSG00000086401 Gm15559 - - 5 F|5 53.7 cM predicted gene 15559 ncRNA 232023 Mm.24642 NM_146168 ENSMUSG00000037788 Vopp1 AW146242|Ecop - 6|6 B3 vesicular, overexpressed in cancer, prosurvival protein 1 protein-coding 61186 D19Mit56 - - 19 6.15 cM DNA segment, Chr 19, Massachusetts Institute of Technology 56 unknown 21003 T(1;12)52H T52H - - reciprocal translocation, Chr 1 and 12, Harwell 52 other 15476 Mm.12559 NM_010474 ENSMUSG00000051022 Hs3st1 3-Ost|D5Wsu110e|Hsg3ost - 5 B3|5 21.14 cM heparan sulfate (glucosamine) 3-O-sulfotransferase 1 protein-coding 98494 AL024054 - - - expressed sequence AL024054 unknown 100417719 Gm18781 - - 7|7 A1 zinc finger protein 184 (Kruppel-like) pseudogene pseudo 102633560 XR_386802 Gm31356 - - 19 D2|19 predicted gene, 31356 ncRNA 100035415 Slms2 - - - sensitivity to locomotor stimulants 2 unknown 100417654 Gm12024 - - 11|11 A3.1 serine/arginine repetitive matrix 1 pseudogene pseudo 102466800 NR_106040 ENSMUSG00000098511 Mir7072 Gm27665|mmu-mir-7072 - 8|8 C5 microRNA 7072 ncRNA 114344 Adip4 - - 8 32.3 cM adiposity 4 unknown 238091 Gm4929 EG238091 - 12|12 A1.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 104039 Lop7 Lop-7 - - lens opacity 7 protein-coding 102640705 XR_880266 Gm36709 - - 11 E1|11 predicted gene, 36709 ncRNA 71320 Mm.79186 4933435F18Rik - - 4|4 D2.2 RIKEN cDNA 4933435F18 gene ncRNA 639820 Gm7280 EG639820 - 16 B5|16 predicted gene 7280 pseudo 666418 Vmn2r-ps83 EG666418|Gm8092 - 7 D3|7 vomeronasal 2, receptor, pseudogene 83 pseudo 100503834 Gm19916 - - 10|10 31.58 cM predicted gene, 19916 protein-coding 104294 Tsp6 - - - tumor suppressor region 6 protein-coding 102642990 XR_001780598 Gm38649 - - 12 A3|12 predicted gene, 38649 ncRNA 666540 Gm15197 EG666540 - 10 B2|10 predicted gene 15197 pseudo 71140 4933413I22Rik - - 8|8 RIKEN cDNA 4933413I22 gene protein-coding 791379 Mm.446687 C030009H01Rik - - - RIKEN cDNA C030009H01 gene unknown 217946 Mm.281149 NM_146040 ENSMUSG00000021175 Cdca7l BC006933|JPO2 - 12|12 F2 cell division cycle associated 7 like protein-coding 17973 Mm.181485 NM_010878 ENSMUSG00000032475 Nck1 6330586M15Rik|D230010O13Rik|Nck|Nck-1 - 9|9 E3.3 non-catalytic region of tyrosine kinase adaptor protein 1 protein-coding 102633698 Gm31459 - - 11 B3|11 predicted gene, 31459 pseudo 27457 15T - - - DNA segment, 15T unknown 751521 NR_030435 ENSMUSG00000076272 Mir666 Mirn666|mir-666|mmu-mir-666 - 12 F1|12 microRNA 666 ncRNA 18046 Mm.318389 NM_008692 ENSMUSG00000032897 Nfyc - - 4 D2.2|4 56.52 cM nuclear transcription factor-Y gamma protein-coding 67931 Mm.259446 NM_026460 ENSMUSG00000034139 Serpini2 Spi14 - 3|3 E3 serine (or cysteine) peptidase inhibitor, clade I, member 2 protein-coding 665461 Gm7642 EG665461 - 9|9 A2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 pseudogene pseudo 26906 Eif2s3x-ps1 - - 15|15 D3 eukaryotic translation initiation factor 2, subunit 3, pseudogene 1 pseudo 68544 Mm.196005 NM_026760 ENSMUSG00000041203 Trir 1110002H14Rik|2310036O22Rik|AI854688 - 8|8 C3 telomerase RNA component interacting RNase protein-coding 20472 Mm.5039 NM_011380 ENSMUSG00000024134 Six2 - - 17 E4|17 55.72 cM sine oculis-related homeobox 2 protein-coding 100418430 Gm19209 - - 19|19 A TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene pseudo 100035317 Orgwt3 - - - organ weight 3 unknown 53094 56G1Sp6 - - - DNA segment, 56G1Sp6 unknown 76613 Mm.122538 1700069B07Rik - - 7|7 RIKEN cDNA 1700069B07 gene protein-coding 692172 Igkv2-113 ha24 - 6|6 C1 immunoglobulin kappa chain variable 2-113 pseudo 108169001 XR_001784540 LOC108169001 - - 4 C5 uncharacterized LOC108169001 ncRNA 102635850 Gm27254 - - 9 D|9 predicted gene 27254 pseudo 242122 Mm.137467 NM_178594 ENSMUSG00000051076 Vtcn1 B7h4|B7s1|B7x|BC032925 - 3|3 F2.2 V-set domain containing T cell activation inhibitor 1 protein-coding 27635 D0Dcr10 - - - DNA segment, Derry C. Roopenian 10 unknown 258319 Mm.223015 NM_146322 ENSMUSG00000043357 Olfr187 MOR183-8 - 16|16 C1.3 olfactory receptor 187 protein-coding 20674 Mm.65396 NM_011443 ENSMUSG00000074637 Sox2 Sox-2|lcc|ysb - 3 A3|3 16.93 cM SRY (sex determining region Y)-box 2 protein-coding 110608 H2-T14 H-2T14 - - histocompatibility 2, T region locus 14 protein-coding 65967 Mm.333237 NM_023060 ENSMUSG00000033216 Eefsec Selb|mSelB|sec - 6|6 D1 eukaryotic elongation factor, selenocysteine-tRNA-specific protein-coding 100416552 Gm18158 - - 4|4 A1 zinc finger protein 46 pseudogene pseudo 73658 Mm.11112 NM_023712 ENSMUSG00000030741 Spns1 2210013K02Rik|Spin1|Spinl - 7|7 F3 spinster homolog 1 protein-coding 106126 AA537047 - - - expressed sequence AA537047 unknown 100861599 Gm21065 - - Y|Y predicted gene, 21065 protein-coding 102631866 XR_390427 Gm30092 - - 4 A2|4 predicted gene, 30092 ncRNA 625219 Gm6564 EG625219 - 5|5 A3 predicted pseudogene 6564 pseudo 100043064 Gm4204 - - 1 E4|1 nucleosome assembly protein 1-like 1 pseudogene pseudo 110093 Nil Ml - - neonatal intestinal lipidosis unknown 27368 Mm.36746 NM_013763 ENSMUSG00000005374 Tbl2 C76179|WS-bTRP - 5 G2|5 75.02 cM transducin (beta)-like 2 protein-coding 26406 Mm.27041 NM_011947 ENSMUSG00000020700 Map3k3 AW548911|MAPKKK3|Mekk3|mKIAA4031 - 11|11 E1 mitogen-activated protein kinase kinase kinase 3 protein-coding 73183 Mm.430720 NR_015581 ENSMUSG00000085776 5430402O13Rik 3110047M22Rik - 6|6 B2.3 RIKEN cDNA 5430402O13 gene ncRNA 75828 Mm.159592 NM_029458 ENSMUSG00000020419 Hormad2 4930529M09Rik - 11|11 A1 HORMA domain containing 2 protein-coding 100526506 NR_037286 ENSMUSG00000077107 Mir344c mir-344c|mmu-mir-344c - 7 C|7 34.29 cM microRNA 344c ncRNA 100534311 Gm21025 - - X|X A7.3 predicted gene, 21025 pseudo 104386 Asc2 Asc-2 - - anterior suture cataract 2 protein-coding 21978 tp - - - taupe unknown 76893 Mm.181009 NM_029789 ENSMUSG00000015714 Cers2 0610013I17Rik|AI225939|Lass2|TRH3 - 3|3 F2.1 ceramide synthase 2 protein-coding 56336 Mm.200886 NM_019835 ENSMUSG00000017929 B4galt5 9430078I07Rik|AW049941|AW539721 - 2|2 H3 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5 protein-coding 103519 BB188282 - - - expressed sequence BB188282 unknown 105245481 XR_873308 Gm40929 - - 13 A4|13 predicted gene, 40929 ncRNA 214922 Mm.281343 NM_001039676 ENSMUSG00000072572 Slc39a2 F730005G13Rik|Gm1789|Gm289|Zip2 - 14|14 C1 solute carrier family 39 (zinc transporter), member 2 protein-coding 107150 AI317275 - - - expressed sequence AI317275 unknown 94052 Ms10s MMS10-S - - minisatellite 10s detected by probe MMS10 other 67484 Mm.112977 NM_026189 ENSMUSG00000036611 Eepd1 2310005P05Rik|AI481005 - 9|9 A4 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 61895 D1Mit441 - - 1 50.85 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 441 unknown 100226 Mm.28237 NM_133887 ENSMUSG00000028879 Stx12 AI850350|AU041521|Stx13 - 4 D2.3|4 66.01 cM syntaxin 12 protein-coding 619309 Muc3a A630081J09Rik - 5|5 mucin 3A, cell surface associated protein-coding 100418319 Gm19137 - - 10|10 B2 predicted gene, 19137 pseudo 100035903 Pbwg14 - - - postnatal body weight growth 14 unknown 102638200 Gm34818 - - 6 B2.1|6 predicted gene, 34818 pseudo 106007489 Heater - - - Hoxa early transcribed region other 359923 DXMgc48 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 48 unknown 100043410 Gm12778 - - 7|7 B1 predicted gene 12778 pseudo 102641229 LOC102641229 - - - histone H4 protein-coding 56504 Mm.111904 NM_019684 ENSMUSG00000002007 Srpk3 Mssk1|Stk23 - X|X A7.3 serine/arginine-rich protein specific kinase 3 protein-coding 20297 Mm.116739 NM_016960 ENSMUSG00000026166 Ccl20 CKb4|LARC|MIP-3A|MIP-3[a]|MIP3A|ST38|Scya20|exodus-1 - 1 C5|1 42.69 cM chemokine (C-C motif) ligand 20 protein-coding 100036520 Mm.98950 NR_045877 ENSMUSG00000056061 Gata5os Gm14318 - 2|2 H4 GATA binding protein 5, opposite strand ncRNA 93906 D16Jhu42 313I9.SP6 - - DNA segment, Chr 16, Johns Hopkins University 42 unknown 66123 Mm.133063 NM_021417 ENSMUSG00000107121 1110006O24Rik - - 5|5 F RIKEN cDNA 1110006O24 gene ncRNA 100417244 Gm18479 - - 11|11 E2 ribosomal protein, large, P0 pseudogene pseudo 230848 Mm.31068 NM_198248 ENSMUSG00000060862 Zbtb40 BC059177|C230087D24|Gm571|mKIAA0478 - 4|4 D3 zinc finger and BTB domain containing 40 protein-coding 66580 Mm.21228 NM_001081090 ENSMUSG00000045624 Esf1 2610101J03Rik|ABTAP|AW545818|C79684 - 2|2 F3 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 668699 Rpl17-ps7 EG668699|Gm9307 - 14|14 E2.3 ribosomal protein L17, pseudogene 7 pseudo 109749 Szf1 - - - seizure frequency 1 protein-coding 102635308 XR_379374 Gm32681 - - 9 A5.3|9 predicted gene, 32681 ncRNA 70103 Mm.273147 NM_027318 ENSMUSG00000059518 Znhit1 2700001K05Rik|ZNFN4A1 - 5|5 G2 zinc finger, HIT domain containing 1 protein-coding 100036499 Mancq2 Man-2 - 10 16.53 cM myeloperoxidase-specific anti-neutrophil cytoplasmic autoantibody QTL 2 unknown 108168488 XR_001782847 Gm46691 - - X C3|X predicted gene, 46691 ncRNA 108200 Hmgb3-ps1 Hmg4-ps1 - - high-mobility group box 3, pseudogene 1 pseudo 108168336 XM_017317760 Gm46592 - - 17 A1|17 predicted gene, 46592 protein-coding 19668 Mm.473794 NM_009036 ENSMUSG00000017007 Rbpjl RBP-L|Rbpsuhl - 2 H3|2 85.16 cM recombination signal binding protein for immunoglobulin kappa J region-like protein-coding 11781 Mm.113205 NM_021392 ENSMUSG00000019518 Ap4m1 4930443L05Rik|Ap4m4 - 5|5 G2 adaptor-related protein complex AP-4, mu 1 protein-coding 212241 Mm.402081 4930579K21 - - 11|11 B1.3 uncharacterized protein 4930579K21 protein-coding 62448 D11Mit351 - - 11 41.13 cM DNA Segment, Chr 11 Massachusetts Institute of Technology 351 unknown 109280057 LOC109280057 Mm463 - - VISTA enhancer mm463 biological-region 672505 Gm9566 - - 17|17 B1 predicted gene 9566 pseudo 258277 Mm.222977 NM_146280 ENSMUSG00000032987 Olfr281 MOR160-5 - 15|15 F1 olfactory receptor 281 protein-coding 14739 Mm.46493 NM_010333 ENSMUSG00000043895 S1pr2 1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2 - 9 A3|9 7.68 cM sphingosine-1-phosphate receptor 2 protein-coding 319660 Mm.485540 NM_178767 ENSMUSG00000050103 Agmo A530016O06Rik|AI790538|Tmem195 - 12|12 A3 alkylglycerol monooxygenase protein-coding 21065 T(11;16)29Ad T29Ad - - reciprocal translocation, Chr 11 and 16, Adler 29 other 493076 Lmr14 - - 2 62.98 cM leishmaniasis resistance 14 unknown 69009 Mm.10174 NM_026909 ENSMUSG00000022760 Thap7 1810004B07Rik - 16 A3|16 THAP domain containing 7 protein-coding 665536 Gm7676 EG665536 - 8|8 A1.1 interferon induced transmembrane protein 1 pseudogene pseudo 108167881 XR_001780158 Gm46268 - - 11 A1|11 predicted gene, 46268 ncRNA 212898 Mm.34557 NM_172508 ENSMUSG00000039497 Dse 6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2 - 10|10 B1 dermatan sulfate epimerase protein-coding 112108 Bgeq5 - - 7 43.46 cM body growth early QTL 5 unknown 85205 D11Mit343 - - 11 13.03 cM DNA Segment, Chr 11 Massachusetts Institute of Technology 343 unknown 102633874 XR_391433 Gm31597 Gm45503 - 7 B3|7 predicted gene, 31597 ncRNA 209281 Gm4757 EG209281 - 19|19 C2 capping protein (actin filament) muscle Z-line, alpha 1 pseudogene pseudo 435650 Gm5704 EG435650 - 1|1 H2.1 exocyst complex component 4 pseudogene pseudo 242341 Mm.19298 NM_175406 ENSMUSG00000028238 Atp6v0d2 1620401A02Rik|AI324824|V-ATPase - 4|4 A3 ATPase, H+ transporting, lysosomal V0 subunit D2 protein-coding 233733 Mm.323322 NM_173739 ENSMUSG00000038296 Galnt18 2900011G21Rik|BC024988|Galntl4|galNAc-T18|mpp-GalNAc-T18(O18) - 7|7 E3-F1 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 111987 Obq5 - - 9 23.53 cM obesity QTL 5 unknown 69749 Mm.248787 NR_038151 ENSMUSG00000087590 Epb41l4aos 2410004N09Rik|Epb4.1l4aos - 18|18 B1 erythrocyte membrane protein band 4.1 like 4a, opposite strand ncRNA 27790 DXPas19 - - - DNA segment, Chr X, Pasteur Institute 19 unknown 19261 Mm.1682 NM_007547 ENSMUSG00000037902 Sirpa AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP - 2 F1|2 63.19 cM signal-regulatory protein alpha protein-coding 102633423 XR_373510 Gm31254 - - 1 C3|1 predicted gene, 31254 ncRNA 102636721 XR_868684 Gm33714 - - 5 G2|5 predicted gene, 33714 ncRNA 230157 Mm.422686 NM_021436 ENSMUSG00000028347 Tmeff1 A830033E11|M7365|TR-1|Tr1 - 4|4 B1 transmembrane protein with EGF-like and two follistatin-like domains 1 protein-coding 664972 Gm7430 EG664972 - 1|1 H1 t-complex protein 11 pseudogene pseudo 105246023 XR_001781746 Gm41385 - - 15 E3|15 predicted gene, 41385 ncRNA 73017 2900072G19Rik - - 15|15 RIKEN cDNA 2900072G19 gene protein-coding 69607 2310011C19Rik - - 10|10 RIKEN cDNA 2310011C19 gene protein-coding 102634011 Mm.335204 XR_379480 Gm26868 - - 9 B|9 predicted gene, 26868 ncRNA 111607 Xmv23 Xmv-23 - - xenotropic murine leukemia virus 23 other 98100 C76294 - - - expressed sequence C76294 unknown 77889 Mm.154109 NM_029999 ENSMUSG00000024063 Lbh 1810009F10Rik|6720416L16Rik - 17|17 E1.3 limb-bud and heart protein-coding 664947 Gm7418 - - 8 C5|8 ribosomal protein L7A pseudogene pseudo 665934 Mm.381491 NR_028417 ENSMUSG00000085720 Gm7854 EG665934 - 5|5 B3 predicted gene 7854 ncRNA 21453 Mm.486251 NM_011552 ENSMUSG00000024613 Tcof1 AA408847|AW209012|treacle - 18 E1|18 34.41 cM treacle ribosome biogenesis factor 1 protein-coding 68087 Mm.277449 NM_026551 ENSMUSG00000020935 Dcakd 3010024O21Rik|6720485C15Rik|AI849483 - 11|11 E1 dephospho-CoA kinase domain containing protein-coding 100418360 Gm19162 - - 10|10 B1 CWC22 spliceosome-associated protein homolog pseudogene pseudo 70465 Mm.5110 NM_027432 ENSMUSG00000000561 Wdr77 2610003I18Rik|2610312E17Rik|C79984|p44/MEP50 - 3|3 F2.2 WD repeat domain 77 protein-coding 277496 Mm.212749 NM_199023 ENSMUSG00000045794 Lkaaear1 4930526D03Rik|Gm692 - 2|2 H4 LKAAEAR motif containing 1 (IKAAEAR murine motif) protein-coding 75645 Mm.159542 NM_029372 ENSMUSG00000025090 Ccdc172 1700011F14Rik - 19|19 D2 coiled-coil domain containing 172 protein-coding 108013 Mm.266435 NM_133195 ENSMUSG00000024268 Celf4 A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik - 18|18 A2 CUGBP, Elav-like family member 4 protein-coding 93854 D1Jor3 - - - DNA segment, Chr 1, Barbara Jordan 3 unknown 19550 Rb(4.15)1Rk Rb1Rk - - Robertsonian translocation, Chr 4 and 15, Roderick 1 other 105244159 XR_879828 Gm39819 - - 11 B1.3|11 predicted gene, 39819 ncRNA 111485 Xmmv22 Env-22|Xmmv-22 - - xenotropic-MCF leukemia virus 22 other 102637984 XR_381457 ENSMUSG00000113092 Gm34662 - - 12 A3|12 predicted gene, 34662 ncRNA 66332 Mm.46124 NM_025493 1700018B24Rik - - 3|3 C enhancer of rudimentary homolog pseudogene pseudo 100038729 Mm.33864 Gm10867 - - 14 C3-D1|14 predicted gene 10867 unknown 667723 Mm.374437 NR_002945 Gm8783 EG667723 - 19|19 C3 protein tyrosine phosphatase 4a1 pseudogene pseudo 102632274 Mm.362939 XR_373491 Gm28818 - - 1 C3|1 predicted gene 28818 ncRNA 12738 Mm.117068 NM_016675 ENSMUSG00000047230 Cldn2 AL022813 - X|X F1 claudin 2 protein-coding 100418321 Gm19139 - - 13|13 C3 predicted gene, 19139 pseudo 100504113 Gm20069 - - 12|12 51.81 cM predicted gene, 20069 ncRNA 83383 Mm.273210 NM_031182 ENSMUSG00000005718 Tfap4 AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41 - 16 A1|16 2.45 cM transcription factor AP4 protein-coding 545047 Mm.425915 NM_001034102 ENSMUSG00000068506 Gm5800 EG545047 - 14|14 C1 predicted gene 5800 protein-coding 381536 Mm.297685 NM_001085520 ENSMUSG00000078625 Gm12789 - - 4|4 C6 predicted gene 12789 protein-coding 100417847 Gm12687 - - 4|4 C6 non-SMC element 1 homolog pseudogene pseudo 100035978 Hemq3 - - 7 61.37 cM hematocrit QTL 3 unknown 56023 D5Buc48 - - - DNA segment, Chr 5, Bucan 48 unknown 546338 Gm5940 EG546338 - X|X B heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 320869 Mm.258354 NM_177279 ENSMUSG00000048478 Spata33 4732415M23Rik|AI847264 - 8|8 E1 spermatogenesis associated 33 protein-coding 102637947 XM_006535981 LOC102637947 Gm13035 - 4|4 E1 60S acidic ribosomal protein P1-like protein-coding 228012 Mm.136511 NM_172664 ENSMUSG00000041997 Tlk1 4930545J15Rik - 2|2 C2 tousled-like kinase 1 protein-coding 20743 Mm.329668 NM_021287 ENSMUSG00000067889 Sptbn2 Spnb3|mKIAA0302 - 19 A|19 4.1 cM spectrin beta, non-erythrocytic 2 protein-coding 102638625 Gm35146 - - 14|14 predicted gene, 35146 protein-coding 108168458 LOC108168458 - - X A1.3 60S ribosomal protein L30-like pseudo 61517 D8Mit139 - - 8 60.53 cM DNA segment, Chr 8, Massachusetts Institute of Technology 139 unknown 100416910 Gm18313 - - 13|13 C1 SET domain, bifurcated 2 pseudogene pseudo 227399 Mm.220817 NM_173760 ENSMUSG00000040648 Ppip5k2 AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433 - 1|1 D diphosphoinositol pentakisphosphate kinase 2 protein-coding 112340 Lore4 - - - loss of righting induced by ethanol 4 unknown 105244443 XR_867293 Gm40050 - - 3 C|3 predicted gene, 40050 ncRNA 329154 Mm.397910 NM_001081433 ENSMUSG00000052331 Ankrd44 4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B - 1|1 C1.2 ankyrin repeat domain 44 protein-coding 66077 Mm.28999 NM_025338 ENSMUSG00000065990 Aurkaip1 0610033H09Rik|Aip|Akip|MRP-S38 - 4 E2|4 87.55 cM aurora kinase A interacting protein 1 protein-coding 100503873 Gm19937 - - 15|15 34.65 cM predicted gene, 19937 ncRNA 105242676 XR_869168 Gm38827 - - 6 C1|6 predicted gene, 38827 ncRNA 17318 Mm.34441 NM_010797 ENSMUSG00000035299 Mid1 61B3-R|DXHXS1141|Fxy|Trim18 - X F5|X 79.19 cM midline 1 protein-coding 71511 Mm.437080 9030601B04Rik - - 6|6 RIKEN cDNA 9030601B04 gene protein-coding 100503856 NM_029322 ENSMUSG00000052334 1700024B05Rik - - 14|14 B RIKEN cDNA 1700024B05 gene unknown 100846988 Gm21055 - - 18 A1|18 non-POU-domain-containing, octamer binding protein pseudogene pseudo 18108 Mm.65021 NM_008708 ENSMUSG00000026643 Nmt2 A930001K02Rik|AI605445|AU044698|hNMT-2 - 2|2 A1 N-myristoyltransferase 2 protein-coding 666895 Gm8353 EG666895 - 14|14 C1 ribosomal protein S15 pseudogene pseudo 78317 Mm.329596 NM_198008 ENSMUSG00000047810 Ccdc88b 2610041P08Rik|Ccdc88 - 19|19 A coiled-coil domain containing 88B protein-coding 22235 Mm.344831 NM_009466 ENSMUSG00000029201 Ugdh Udpgdh - 5 C3.1|5 33.67 cM UDP-glucose dehydrogenase protein-coding 20617 Mm.17484 NM_009221 ENSMUSG00000025889 Snca NACP|alpha-Syn|alphaSYN - 6 B3|6 29.15 cM synuclein, alpha protein-coding 107970 Mm.8048 NM_010377 ENSMUSG00000036211 Hist1h1t H1.6|H1ft|H1t - 13|13 A3.1 histone cluster 1, H1t protein-coding 97357 C77631 - - - expressed sequence C77631 unknown 100040963 Gm20855 - - Y|Y predicted gene, 20855 protein-coding 100416658 Gm15000 - - X|X F1 zinc finger protein 259 pseudogene pseudo 71902 Mm.203965 NM_027994 ENSMUSG00000020114 Cand1 2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829 - 10 D2|10 67.08 cM cullin associated and neddylation disassociated 1 protein-coding 68600 1110021P09Rik - - 3|3 RIKEN cDNA 1110021P09 gene protein-coding 76177 6330565B04Rik - - 1|1 RIKEN cDNA 6330565B04 gene unknown 16617 Mm.483098 NM_010643 ENSMUSG00000063713 Klk1b24 Klk24|mGk-24 - 7 B3|7 28.7 cM kallikrein 1-related peptidase b24 protein-coding 75021 Mm.416925 4930465K12Rik - - 9|9 RIKEN cDNA 4930465K12 gene protein-coding 258207 Mm.377378 NM_001011869 ENSMUSG00000094192 Olfr452 MOR257-5P - 6|6 B2.1 olfactory receptor 452 protein-coding 627424 Gm6755 EG627424 - 14|14 C2 nuclear receptor binding factor 2 pseudogene pseudo 75449 1700008N17Rik - - 2|2 RIKEN cDNA 1700008N17 gene protein-coding 75845 Mm.437835 NR_131016 ENSMUSG00000109382 4930567K12Rik Gm45128 - 7|7 E1 RIKEN cDNA 4930567K12 gene ncRNA 105244084 XR_865975 Gm13270 - - 2 A1|2 9.85 cM predicted gene 13270 ncRNA 70392 Mm.79122 NM_080858 ENSMUSG00000031204 Asb12 2310036C05Rik|Asb-12 - X|X C3 ankyrin repeat and SOCS box-containing 12 protein-coding 100416200 Gm15044 - - X|X F1 ribosomal protein L7 pseudogene pseudo 102640263 XM_006516439 Gm36375 - - 12 E|12 predicted gene, 36375 protein-coding 100041998 Gm3616 - - 7|7 A1 vomeronasal 2, receptor 31 pseudogene pseudo 61507 D8Mit111 - - 8 53.04 cM DNA segment, Chr 8, Massachusetts Institute of Technology 111 unknown 105242705 XR_869213 Gm38849 - - 6 D1|6 predicted gene, 38849 ncRNA 665032 Gm13841 - - 5|5 F ribosomal protein L29 pseudo 105246917 XR_880430 Gm42113 - - 5 E2|5 predicted gene, 42113 ncRNA 11544 Mm.20047 NM_007414 ENSMUSG00000002844 Adprh Arh1 - 16|16 B4 ADP-ribosylarginine hydrolase protein-coding 73887 Mm.159084 NR_045806 ENSMUSG00000071818 4930417O22Rik - - 11|11 D RIKEN cDNA 4930417O22 gene ncRNA 102635490 Gm26660 - - 14|14 predicted gene, 26660 protein-coding 668494 Gm9204 EG668494 - 8|8 E2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 12556 Mm.19423 NM_007663 ENSMUSG00000031881 Cdh16 - - 8 D3|8 53.04 cM cadherin 16 protein-coding 68112 Mm.253771 NM_026563 ENSMUSG00000026927 Sdccag3 C330016H24Rik|C630038K21Rik - 2|2 A3 serologically defined colon cancer antigen 3 protein-coding 100279 AU018381 - - - expressed sequence AU018381 unknown 70371 Mm.394667 NR_028286 ENSMUSG00000086379 1700026D11Rik - - 2|2 F2 RIKEN cDNA 1700026D11 gene ncRNA 105242887 Mm.450985 XR_881907 Gm15541 - - 7 A3|7 15.92 cM predicted gene 15541 ncRNA 432729 Tcrg-C A130095M15Rik - 13 A2|13 6.89 cM T cell receptor gamma, constant region other 71361 Mm.286309 NM_153779 ENSMUSG00000020085 Aifm2 5430437E11Rik|Amid|D730001I10Rik|PRG3 - 10|10 B4 apoptosis-inducing factor, mitochondrion-associated 2 protein-coding 780796 Ighv5-18 - - 12|12 F1 immunoglobulin heavy variable V5-18 pseudo 665044 Mm.71008 Gm7461 EG665044 - 8|8 A1.1 predicted gene 7461 ncRNA 52071 D8Ertd54e - - 8 58.2 cM DNA segment, Chr 8, ERATO Doi 54, expressed unknown 211389 Mm.23352 NM_173733 ENSMUSG00000049858 Suox SO - 10|10 D3 sulfite oxidase protein-coding 102636574 Gm33601 - - 7 A1|7 predicted gene, 33601 pseudo 381224 Mm.484620 Gm340 - - 19|19 C3 predicted gene 340 protein-coding 105243224 XR_878950 Gm39202 - - 8 C1|8 predicted gene, 39202 ncRNA 100038373 Gm10062 - - 5 B1|5 adaptor-related protein complex AP-1, sigma 3 pseudogene pseudo 635668 Mm.390230 XM_017313742 Fbxw23 Gm7163 - 9 F2|9 F-box and WD-40 domain protein 23 protein-coding 100035139 mdlk1 - - 7 15.86 cM modifier of Dlk1 unknown 102634709 XR_001781586 ENSMUSG00000061848 LOC102634709 - - 15 E1 ribosomal protein S14 pseudogene pseudo 108168781 XR_001783429 Gm46755 - - 2 E3|2 predicted gene, 46755 ncRNA 100417257 Gm18485 - - 6|6 E3 crumbs homolog 1 pseudogene pseudo 105245239 XR_871884 Gm40720 - - 10 C1|10 predicted gene, 40720 ncRNA 66323 Mm.273316 NM_025488 ENSMUSG00000056508 1700001K19Rik - - 12|12 F1 RIKEN cDNA 1700001K19 gene protein-coding 545207 Mm.329050 NR_045153 E130008D07Rik - - 17|17 B3 RIKEN cDNA E130008D07 gene ncRNA 101434 Mm.102767 NM_175315 ENSMUSG00000078795 Ceacam15 AA407838|C430002N04Rik - 7|7 A2 carcinoembryonic antigen-related cell adhesion molecule 15 protein-coding 12506 Mm.1738 NM_007649 ENSMUSG00000015355 Cd48 AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60 - 1 H3|1 79.54 cM CD48 antigen protein-coding 258712 Mm.223146 NM_146717 ENSMUSG00000045381 Olfr433 MOR123-1 - 1|1 H3 olfactory receptor 433 protein-coding 109279866 LOC109279866 Mm56 - - VISTA enhancer mm56 biological-region 13234 Mm.436573 Defa15 Defcr15 - 8|8 defensin, alpha, 15 protein-coding 102634610 XR_386957 Gm32150 - - X A7.3|X predicted gene, 32150 ncRNA 102636965 XR_385676 Gm33890 - - 17 E1.1|17 predicted gene, 33890 ncRNA 105243027 XR_869866 Gm39068 - - 7 E3|7 predicted gene, 39068 ncRNA 61199 D1Mit126 - - 1 30.51 cM DNA segment, Chr 1, Massachusetts Institute of Technology 126 unknown 102635772 XR_869306 Gm26748 - - 6 D3|6 predicted gene, 26748 ncRNA 619980 Gm6119 EG619980 - 1|1 A1 GC-rich promoter binding protein 1-like 1 pseudogene pseudo 665521 Mm.380154 XR_168623 BC080696 - - 5|5 E3 cDNA sequence BC080696 unknown 628298 NM_001081334 Gm14328 - - 18|18 E2 fatty acid-binding protein, epidermal pseudogene pseudo 102636470 XR_378430 Gm33527 - - 7 F1|7 predicted gene, 33527 ncRNA 105245279 XR_872019 LOC105245279 - - 10 D1 uncharacterized LOC105245279 ncRNA 72018 Mm.41558 NM_028058 ENSMUSG00000025040 Fundc1 1500005J14Rik|1810033P05Rik - X|X A1.2 FUN14 domain containing 1 protein-coding 108167429 XR_001778127 LOC108167429 - - 7 B4 uncharacterized LOC108167429 ncRNA 60929 D9Mit73 - - 9 39.85 cM DNA segment, Chr 9, Massachusetts Institute of Technology 73 unknown 16301 In(7)13Rk-d In(7)13Rk|In13Rk - - inversion, Chr 7, Roderick 13, distal other 359874 DXMgc21 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 21 unknown 100042248 Gm3748 - - 17|17 A3.3 predicted gene 3748 pseudo 628128 Vmn2r-ps41 EG628128|Gm6845 - 7|7 A1 vomeronasal 2, receptor, pseudogene 41 pseudo 258914 Mm.391507 NM_146912 ENSMUSG00000053391 Olfr211 MOR253-9 - 6|6 E3 olfactory receptor 211 protein-coding 192118 Lith4 - - X 50.14 cM lithogenic gene 4 unknown 242050 Mm.228086 NM_001162884 ENSMUSG00000036334 Igsf10 6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608 - 3|3 D immunoglobulin superfamily, member 10 protein-coding 13350 Mm.22633 NM_010046 ENSMUSG00000022555 Dgat1 ARAT|C75990|D15Ertd23e|Dgat - 15 D3|15 35.99 cM diacylglycerol O-acyltransferase 1 protein-coding 53142 Y94m2h10 - - - DNA segment, Y94m2h10 unknown 102636939 XR_382392 Gm33873 - - 13 B1|13 predicted gene, 33873 ncRNA 102639457 Gm35764 - - 6|6 predicted gene, 35764 ncRNA 271036 Mm.84218 NM_173023 ENSMUSG00000047014 Catsperb 4931410B03|4932415G16Rik - 12|12 E cation channel sperm associated auxiliary subunit beta protein-coding 102637227 XR_378874 Gm34096 - - 8 A4|8 predicted gene, 34096 ncRNA 102642702 XR_875547 Gm38626 - - 15 E3|15 predicted gene, 38626 ncRNA 19350 Rab7-ps1 - - 9 A5.3|9 29.79 cM RAB7, member RAS oncogene family, pseudogene 1 pseudo 665488 Gm7657 EG665488 - X|X A4 predicted gene 7657 pseudo 108168159 Gm46453 - - 14 C1|14 transcription initiation factor TFIID subunit 13 pseudogene pseudo 170736 Mm.323892 NM_133167 ENSMUSG00000022438 Parvb AI595373|AW742462|D15Gsk1|affixin - 15|15 E2 parvin, beta protein-coding 102633192 XR_374213 Gm31080 - - 2 B|2 predicted gene, 31080 ncRNA 77328 Mm.87041 C030009O12Rik AI835271 - 5|5 RIKEN cDNA C030009O12 gene protein-coding 404587 AL117810 - - - expressed sequence AL117810 unknown 102634154 Mm.471323 LOC102634154 - - - uncharacterized LOC102634154 ncRNA 102640677 XR_375214 Gm36690 - - 2 H3|2 predicted gene, 36690 ncRNA 107994 Nidd4n Nidd4nsy - 11 9.41 cM non-insulin-dependent diabetes mellitus 4 in NSY unknown 12788 Mm.436652 NM_007723 ENSMUSG00000067220 Cnga1 Cncg - 5 C3.2|5 38.44 cM cyclic nucleotide gated channel alpha 1 protein-coding 100534386 LOC100534386 - - 4|4 E1 protein phosphatase 2, regulatory subunit B (B56), alpha isoform pseudogene pseudo 102634758 Gm32264 - - Y|Y tRNA methyltransferase 112 homolog pseudo 102637011 XR_391560 Gm33926 Gm45099 - 7 C|7 predicted gene, 33926 ncRNA 668272 Mm.236764 NR_004052 Gm9079 - - 10 D2|10 transmembrane emp24 domain trafficking protein 2 pseudogene pseudo 638532 Gm7241 EG638532 - 1|1 E4 predicted pseudogene 7241 pseudo 433410 Gm13418 - - 2|2 A3 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 100125394 Cyp2c71-ps - - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 71, pseudogene pseudo 111586 Pmv21 Pmv-21 - - polytropic murine leukemia virus 21 other 53060 5n7-T7 - - - DNA segment, 5n7-T7 unknown 70573 Mm.68291 NM_001081368 ENSMUSG00000004462 Tbccd1 5730478M09Rik|AU015083|BB165076 - 16|16 B1 TBCC domain containing 1 protein-coding 387147 NR_029543 ENSMUSG00000065520 Mir128-1 Mirn128|Mirn128-1|Mirn128a|mir-128-1 - 1|1 E3 microRNA 128-1 ncRNA 102632028 Gm30205 - - 5|5 predicted gene, 30205 ncRNA 62222 D16Mit87 - - 16 5.34 cM DNA segment, Chr 16, Massachusetts Institute of Technology 87 unknown 26946 Mm.62409 NM_012035 ENSMUSG00000021541 Trpc7 TRP7|Trrp8 - 13|13 B1 transient receptor potential cation channel, subfamily C, member 7 protein-coding 100035104 Manln17 - - 15 16.74 cM mandible length 17 unknown 231861 Mm.354649 NM_178242 ENSMUSG00000039477 Tnrc18 BC025631|EG381742|Zfp469 - 5|5 G2 trinucleotide repeat containing 18 protein-coding 74105 Mm.29619 NM_028758 ENSMUSG00000030872 Gga2 1200007E24Rik|mKIAA1080 - 7|7 F2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 protein-coding 448987 Mm.253378 NM_176959 ENSMUSG00000043556 Fbxl7 AL023057|D230018M15Rik|FBL7|Fbl6 - 15|15 B1 F-box and leucine-rich repeat protein 7 protein-coding 60864 D6Mit54 - - 6 52.14 cM DNA segment, Chr 6, Massachusetts Institute of Technology 54 unknown 106885 Mm.437042 AI314760 - - - expressed sequence AI314760 protein-coding 674080 LOC674080 Vh7183.a44psi.71 - 12|12 immunoglobulin heavy chain variable region VH7183 pseudogene pseudo 15013 Mm.427969 NM_010392 ENSMUSG00000091705 H2-Q2 BE136769|Gm11132|H-2Q2|gs14-2 - 17 B1|17 18.64 cM histocompatibility 2, Q region locus 2 protein-coding 109280143 LOC109280143 Mm1334 - - VISTA enhancer mm1334 biological-region 102634700 Gm32222 - - 6 A1|6 predicted gene, 32222 pseudo 381654 Mm.326591 NM_001164284 ENSMUSG00000070686 C87414 - - 5|5 E2 expressed sequence C87414 protein-coding 97153 C79059 - - - expressed sequence C79059 unknown 116753 Cocrb7 - - - cocaine related behavior 7 unknown 100038693 Mm.402714 NR_027137 ENSMUSG00000073728 Tmem51os1 Gm10565|Tmem51as1 - 4 E1|4 Tmem51 opposite strand 1 ncRNA 105243187 Gm39176 - - 8|8 predicted gene, 39176 pseudo 102632798 Gm28446 - - Y|Y predicted gene 28446 protein-coding 102638960 Mm.412416 Gm26838 - - 16|16 predicted gene, 26838 ncRNA 211949 Mm.491271 NM_145134 ENSMUSG00000046997 Spsb4 D030068E18Rik|SSB-4|Ssb4 - 9|9 E3.3 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 672195 Gm10053 CYCS - 19|19 B cytochrome c, somatic pseudogene pseudo 14088 Mm.126106 NM_007985 ENSMUSG00000021461 Fancc Facc - 13 B3|13 32.8 cM Fanconi anemia, complementation group C protein-coding 84585 Mm.379272 NM_032543 ENSMUSG00000041528 Rnf123 BC003945|Kpc1 - 9|9 F1 ring finger protein 123 protein-coding 73364 Mm.416863 XR_001779351 ENSMUSG00000099266 1700063H06Rik - - 9|9 E1 RIKEN cDNA 1700063H06 gene ncRNA 68666 Mm.63584 NM_026805 ENSMUSG00000042078 Svop 1110030H18Rik|AI415691|msvop - 5|5 F SV2 related protein protein-coding 60923 D9Mit48 - - 9 31.63 cM DNA segment, Chr 9, Massachusetts Institute of Technology 48 unknown 97104 C85699 - - - expressed sequence C85699 unknown 75057 Mm.3645 4930504B08Rik - - 9|9 RIKEN cDNA 4930504B08 gene protein-coding 61023 D6Mit69 - - 6 35.94 cM DNA segment, Chr 6, Massachusetts Institute of Technology 69 unknown 62179 D15Mit14 - - 15 56.13 cM DNA segment, Chr 15, Massachusetts Institute of Technology 14 unknown 12971 Mm.9114 NM_016669 ENSMUSG00000030905 Crym - - 7 F2|7 64.47 cM crystallin, mu protein-coding 100038578 Mm.446656 Gm10848 - - - predicted gene 10848 ncRNA 102636134 Gm33288 - - 19|19 predicted gene, 33288 ncRNA 100503083 Gm19544 - - 2|2 97.88 cM predicted gene, 19544 ncRNA 100502933 Mm.487491 NR_037984 ENSMUSG00000101693 Gm19461 - - 1 E4|1 57.91 cM predicted gene, 19461 ncRNA 102637113 XR_881189 Gm34007 - - 4 A5|4 predicted gene, 34007 ncRNA 62142 D13Mit78 - - 13 67.21 cM DNA segment, Chr 13, Massachusetts Institute of Technology 78 unknown 627367 Mm.384131 NM_001104549 ENSMUSG00000091491 Vmn2r97 EG627367|Vn2r97 - 17|17 A3.2 vomeronasal 2, receptor 97 protein-coding 101055860 Gm29734 - - 13|13 predicted gene, 29734 protein-coding 108168255 XR_001781735 Gm46529 - - 15 E2|15 predicted gene, 46529 ncRNA 545216 Gm5815 EG545216 - 17|17 D glucocorticoid induced transcript 1 pseudogene pseudo 83767 Mm.41353 NM_031877 ENSMUSG00000019831 Wasf1 AI195380|AI838537|Scar|WAVE|WAVE-1 - 10 B1|10 22.07 cM WAS protein family, member 1 protein-coding 102639543 XM_006497078 ENSMUSG00000037849 LOC102639543 - - 1 H3 signaling mucin HKR1-like protein-coding 224656 Mm.267359 NM_172617 ENSMUSG00000024220 Zfp523 2810027J07|BC025615|Znf76 - 17|17 A3.3 zinc finger protein 523 protein-coding 236775 Gm4908 EG236775 - X|X A4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 67608 Mm.291832 NM_026272 ENSMUSG00000000056 Narf 4430402O11Rik - 11|11 E2 nuclear prelamin A recognition factor protein-coding 258857 Mm.484340 NM_146858 ENSMUSG00000089717 Olfr275 MOR262-2 - 4|4 B2 olfactory receptor 275 protein-coding 244585 Mm.324592 NM_173431 ENSMUSG00000033282 Rpgrip1l 1700047E16Rik|4931437C01|Ftm|Nphp8 - 8 C4|8 44.29 cM Rpgrip1-like protein-coding 111540 Pmv22 Pmv-22 - - polytropic murine leukemia virus 22 other 545034 Gm5798 - - 14 B|14 predicted gene 5798 pseudo 258771 Mm.451662 NM_146775 ENSMUSG00000095212 Olfr473 MOR204-4 - 7|7 E3 olfactory receptor 473 protein-coding 100036179 Pbft1 - - - percent body fat 1 unknown 106345153 Gm45930 - - 12 D1|12 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 pseudogene pseudo 111675 Mintb - - - Moloney MuLV integration site, EC cells, b other 100042172 Vmn2r-ps149 - - Y|Y A1 vomeronasal 2, receptor, pseudogene 149 pseudo 214616 Mm.271306 NM_001033256 Spata5l1 AV141009|C130039A10Rik - 2|2 E5 spermatogenesis associated 5-like 1 protein-coding 108168413 XR_001782669 Gm46652 - - 19 D3|19 predicted gene, 46652 ncRNA 67645 Mm.46170 NM_026290 ENSMUSG00000024223 Armc12 4930511I11Rik|AV041658 - 17|17 A3.3 armadillo repeat containing 12 protein-coding 14620 Mm.90003 NM_008126 ENSMUSG00000042367 Gjb3 Cnx31|Cx31|D4Wsu144e|Gjb-3 - 4 D2.2|4 61.48 cM gap junction protein, beta 3 protein-coding 102640184 XR_380207 Gm36313 - - 10 A4|10 predicted gene, 36313 ncRNA 100048978 Wtmq9 mQTL19 - - weight module QTL 9 unknown 102634807 XR_382759 Gm32305 - - 13 C3|13 predicted gene, 32305 ncRNA 241715 Gm14131 Icln - 2|2 G3 chloride channel, nucleotide-sensitive, 1A pseudogene pseudo 105247284 Gm42408 - - Y|Y predicted gene, 42408 ncRNA 74243 Mm.330612 NM_028201 ENSMUSG00000027281 Slx4ip 2210009G21Rik|2410004I22Rik|C85661|Slxip - 2|2 F3 SLX4 interacting protein protein-coding 78285 Mm.160080 5330426L24Rik - - 14 C2|14 RIKEN cDNA 5330426L24 gene unknown 51855 D1Sut1e - - - DNA segment, Chr 1, Sutcliffe 1 expressed unknown 108167451 XR_001778239 Gm45995 - - 7 E2|7 predicted gene, 45995 ncRNA 108168843 XR_001783633 Gm46791 - - 2 H4|2 predicted gene, 46791 ncRNA 546543 Gm5955 - - 12 D3|12 predicted gene 5955 protein-coding 102465787 NR_106155 ENSMUSG00000105799 Mir126b mmu-mir-126b - 2|2 A3 microRNA 126b ncRNA 56375 Mm.182377 NM_019804 ENSMUSG00000022793 B4galt4 9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV - 16|16 B4 UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4 protein-coding 114696 Skull9 L7|QTL-S7.1 - 7 43.46 cM skull morphology 9 unknown 672822 Gm9577 - - 17|17 B1 minichromosome maintenance deficient 4 homolog pseudogene pseudo 667700 Gm8770 EG667700 - X|X B SET domain-containing protein 8 pseudogene pseudo 102635065 NR_153352 ENSMUSG00000104102 Gm32496 - - 3 A1|3 predicted gene, 32496 ncRNA 108167433 XR_001778162 Gm45987 - - 7 C|7 predicted gene, 45987 ncRNA 102632133 Gm30287 - - 2|2 predicted gene, 30287 ncRNA 102638594 Gm35121 - - 17|17 predicted gene, 35121 ncRNA 668594 Gm9259 EG668594 - 12 A1.2|12 predicted gene 9259 ncRNA 628495 Gm6885 EG628495 - 9|9 A5.1 predicted gene 6885 pseudo 19362 Mm.204634 NM_009013 ENSMUSG00000030346 Rad51ap1 2510006L10Rik|RAB22 - 6 F3|6 61.92 cM RAD51 associated protein 1 protein-coding 61493 D7Mit193 - - 7 31.44 cM DNA segment, Chr 7, Massachusetts Institute of Technology 193 unknown 338369 Mm.128138 NM_177392 ENSMUSG00000050270 Tmem220 - - 11|11 B3 transmembrane protein 220 protein-coding 100504734 Mm.394567 XR_105305 Gm16794 - - 9 E3.3|9 50.3 cM predicted gene, 16794 ncRNA 70563 5730453C05Rik - - 5|5 RIKEN cDNA 5730453C05 gene protein-coding 102632148 XR_381991 Gm30298 - - 12 F1|12 predicted gene, 30298 ncRNA 241051 Mm.282827 NR_033627 AA619741 - - 1|1 B PHD finger protein 19 pseudogene pseudo 494546 Mm.379739 NM_001010840 ENSMUSG00000100004 Taar8c taR-8c - 10|10 A4 trace amine-associated receptor 8C protein-coding 20227 Mm.34562 NM_016882 ENSMUSG00000039148 Sart1 U5-110K - 19|19 A squamous cell carcinoma antigen recognized by T cells 1 protein-coding 27545 D15N10 43P19T7 - - DNA segment, Ch 15, NIH 10 unknown 66867 Mm.150856 NM_025812 ENSMUSG00000032329 Hmg20a 1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf - 9|9 B high mobility group 20A protein-coding 170639 Mm.184372 NM_130866 ENSMUSG00000043366 Olfr78 4633402A21Rik|MOL2.3|MOR18-2|Or51e2|PSGR|RA1c - 7|7 E3 olfactory receptor 78 protein-coding 100416715 Gm18212 - - 8|8 C2 zinc finger protein 235 pseudogene pseudo 108900 Mm.31278 NM_175382 ENSMUSG00000055184 Fam72a 2700049P18Rik|P17 - 1|1 E4 family with sequence similarity 72, member A protein-coding 68770 Mm.86410 NM_172992 ENSMUSG00000039987 Phtf2 1110054G21Rik|9530062N20Rik|AI447096|C77923 - 5|5 A3 putative homeodomain transcription factor 2 protein-coding 102639070 XR_379023 Gm35472 - - 8 B3.1|8 predicted gene, 35472 ncRNA 66206 Mm.272430 NM_025423 ENSMUSG00000035171 1110059E24Rik - - 19|19 B RIKEN cDNA 1110059E24 gene protein-coding 93943 D16Jhu58e 167C20.SP6 - - DNA segment, Chr 16, Johns Hopkins University 58, expressed protein-coding 11459 Mm.214950 NM_009606 ENSMUSG00000031972 Acta1 AA959943|Acta-2|Acts|Actsk-1 - 8 E2|8 72.26 cM actin, alpha 1, skeletal muscle protein-coding 100034794 Hdlq12 - - 6 77.64 cM HDL QTL 12 unknown 102635983 XR_390359 Gm33182 - - 4 A1|4 predicted gene, 33182 ncRNA 404286 Mm.377930 NM_207545 ENSMUSG00000046924 Vmn1r179 V1rd17 - 7|7 A3 vomeronasal 1 receptor 179 protein-coding 105246954 XR_880531 Gm42147 - - 5 F|5 predicted gene, 42147 ncRNA 110588 Tcra-V10.3 - - - T cell receptor alpha, variable 10.3 other 108168625 XM_017318833 LOC108168625 - - Y C2 Y-linked testis-specific protein 1-like protein-coding 54214 Mm.10409 NM_018748 ENSMUSG00000038708 Golga4 AI225887|AU019508|Olp-1 - 9|9 F3 golgi autoantigen, golgin subfamily a, 4 protein-coding 621983 Gm6274 EG621983 - X|X A3.3 ribosomal protein L7 pseudogene pseudo 100568458 Mm.196137 NR_038081 Gm38431 Raver1-fdx1l - 9 A3|9 predicted gene, 38431 ncRNA 545261 Mm.426593 NR_045420 ENSMUSG00000098098 Bvht Braveheart|Gm20748 - 18|18 E1 braveheart long non-coding RNA ncRNA 232087 Mm.29815 NM_145569 ENSMUSG00000053907 Mat2a D630045P18Rik - 6|6 C1 methionine adenosyltransferase II, alpha protein-coding 102638904 XM_017318698 Gm21737 - - Y A2|Y predicted gene, 21737 protein-coding 100503073 Mm.436939 Gm19537 - - 1|1 42.04 cM predicted gene, 19537 unknown 77738 6720469O03Rik - - 7|7 RIKEN cDNA 6720469O03 gene protein-coding 100010 AA589556 - - - expressed sequence AA589556 unknown 624421 XM_011249642 ENSMUSG00000095718 Gm6502 - - 5 E3|5 predicted gene 6502 protein-coding 62876 D11Mit258 - - 11 70.29 cM DNA segment, Chr 11, Massachusetts Institute of Technology 258 unknown 56449 Mm.458000 NM_011733 ENSMUSG00000030189 Ybx3 Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR - 6|6 F3 Y box protein 3 protein-coding 102635226 Mm.309204 XR_383910 Gm32618 - - 15 B3.1|15 predicted gene, 32618 ncRNA 66132 Mm.383213 NM_025373 ENSMUSG00000021023 1110008L16Rik Kiaa0391|Mrpp3|mKIAA0391 - 12|12 C1 RIKEN cDNA 1110008L16 gene protein-coding 97868 Mm.441752 C78704 - - - expressed sequence C78704 protein-coding 319659 Mm.376329 A730091E23Rik - - 13|13 RIKEN cDNA A730091E23 gene protein-coding 546797 Gm5978 EG546797 - 17|17 B3 predicted gene 5978 protein-coding 667797 Gm8820 EG667797 - 6|6 A1 ribosomal protein L19 pseudogene pseudo 243963 Mm.382935 NM_178734 ENSMUSG00000048012 Zfp473 D030014N22Rik|Znf473|zfp-100 - 7|7 B3 zinc finger protein 473 protein-coding 100034920 Kidq1 - - - kidney weight QTL 1 unknown 100036212 Pfibs2 - - - pulmonary fibrosis susceptibility 2 unknown 19492 Rb(16.17)32Lub Rb32Lub - - Robertsonian translocation, Chr 16 and 17, Lubeck 32 other 108168970 XR_001784385 Gm46865 - - 4 C7|4 predicted gene, 46865 ncRNA 67543 Mm.26987 NM_026226 ENSMUSG00000046173 Pabpc6 4932702K14Rik|AI428050|Pabpc3 - 17|17 A1 poly(A) binding protein, cytoplasmic 6 protein-coding 69887 2010100M03Rik - - 19|19 RIKEN cDNA 2010100M03 gene protein-coding 232821 Mm.482157 NM_146178 ENSMUSG00000035228 Ccdc106 BC018462 - 7|7 A1 coiled-coil domain containing 106 protein-coding 102633396 XR_378939 Gm31231 - - 8 B1.1|8 predicted gene, 31231 ncRNA 100040231 Mm.417769 Gm2675 - - 15 D1|15 predicted gene 2675 protein-coding 70475 5730409N16Rik - - 12|12 RIKEN cDNA 5730409N16 gene ncRNA 100041318 Gm15342 - - 16|16 C4 predicted gene 15342 protein-coding 54156 Mm.37707 NM_019397 ENSMUSG00000000402 Egfl6 Maeg - X F5|X 77.66 cM EGF-like-domain, multiple 6 protein-coding 404395 Olfr475-ps1 - - 2|2 D olfactory receptor 475, pseudogene 1 pseudo 668724 Gm9320 EG668724 - 17|17 E1.3 ribosomal protein S24 pseudogene pseudo 493082 Radpf2 Radpf-2 - 1 80.33 cM radiation pulmonary fibrosis 2 unknown 13025 Mm.30144 NM_007797 ENSMUSG00000074874 Ctla2b AW545568|Ctla-2b - 13 B2|13 cytotoxic T lymphocyte-associated protein 2 beta protein-coding 15109 Mm.13000 NM_010401 ENSMUSG00000020017 Hal Hsd|his|histidase - 10 C2|10 48.49 cM histidine ammonia lyase protein-coding 384911 Gm5362 EG384911 - 9|9 A1 topoisomerase (DNA) II alpha) pseudogene pseudo 110221 Igh-Aa2 - - - immunoglobulin heavy chain Aa2 other 223642 Mm.209800 NM_172121 ENSMUSG00000075600 Zc3h3 BC049953|Kiaa0150|Smicl|Zc3hdc3 - 15|15 D3 zinc finger CCCH type containing 3 protein-coding 67538 Mm.33184 NM_178375 ENSMUSG00000045822 Zswim3 4921517A06Rik|C86566 - 2|2 H3 zinc finger SWIM-type containing 3 protein-coding 77193 Mm.440757 A930030B08Rik - - 7|7 RIKEN cDNA A930030B08 gene protein-coding 667759 Gm8797 EG667759 - 3|3 A1 ubiquitin B pseudogene pseudo 16574 Mm.256342 NM_008449 ENSMUSG00000026764 Kif5c KINN|Khc|NKHC|NKHC2 - 2 C1.1|2 28.68 cM kinesin family member 5C protein-coding 68957 Mm.441486 NM_198410 ENSMUSG00000041423 Paqr6 1500001B10Rik - 3|3 F1 progestin and adipoQ receptor family member VI protein-coding 60767 D2Mit71 - - 2 84.22 cM DNA segment, Chr 2, Massachusetts Institute of Technology 71 unknown 102631745 XR_874721 Gm30008 - - 14 D1|14 predicted gene, 30008 ncRNA 258977 Mm.377774 NM_146975 ENSMUSG00000080809 Olfr1273-ps MOR227-4|Olfr1273 - 2|2 E1 olfactory receptor 1273, pseudogene protein-coding 100041105 Gm3140 - - 14|14 A1 predicted gene 3140 pseudo 212815 Mm.485947 Gm4780 EG212815 - 10|10 A4 makorin, ring finger protein, 2 pseudogene pseudo 626055 Mm.414818 NR_033578 Gm15645 EG626055 - 7 E3|7 predicted gene 15645 pseudo 102640807 XR_377976 Gm36788 - - 6 E3|6 predicted gene, 36788 ncRNA 627079 Scgb2b25-ps Abpbg25-ps|Gm12777 - 7|7 B1 secretoglobin, family 2B, member 25, pseudogene protein-coding 51988 D8Ggc3e - - - DNA segment, Chr 8, G. Consalez 3, expressed unknown 360214 Mm.271559 NM_183038 ENSMUSG00000061847 Defb39 BD-39 - 8|8 A1.3 defensin beta 39 protein-coding 73819 4930402N20Rik - - 10|10 RIKEN cDNA 4930402N20 gene protein-coding 381142 Mm.329423 NM_001033446 ENSMUSG00000073568 Arl14epl Gm949 - 18|18 C ADP-ribosylation factor-like 14 effector protein-like protein-coding 15275 Mm.196605 NM_010438 ENSMUSG00000037012 Hk1 BB404130|Hk-1|Hk1-s|dea|mHk1-s - 10 B4|10 32.37 cM hexokinase 1 protein-coding 11818 Mm.2266 NM_013475 ENSMUSG00000000049 Apoh B2GPI|beta-2-GPI|beta2-GPI - 11 E1|11 71.8 cM apolipoprotein H protein-coding 100038452 Mm.452532 Gm13372 - - - predicted gene 13372 unknown 100862493 Gm29698 - - 6|6 predicted gene, 29698 pseudo 102633890 LOC102633890 - - 11 B1.1 40S ribosomal protein S2 pseudogene pseudo 19644 Rb(X.9)6H Rb6H - - Robertsonian translocation, Chr X and 9, Harwell 6 other 105244231 XR_866538 Gm39878 - - 2 E1|2 predicted gene, 39878 ncRNA 12348 Mm.27736 NM_009800 ENSMUSG00000003273 Car11 Ca11 - 7|7 B3 carbonic anhydrase 11 protein-coding 100416949 Gm14208 - - 2|2 E5 cyclin-dependent kinase 12 pseudogene pseudo 100039026 Gm10031 - - 1|1 G3 predicted pseudogene 10031 pseudo 74992 Mm.401979 NR_040601 4930487H11Rik - - 1|1 C2 RIKEN cDNA 4930487H11 gene ncRNA 102633822 Gm31554 - - 16|16 predicted gene, 31554 pseudo 13876 Mm.164531 NM_133659 ENSMUSG00000040732 Erg D030036I24Rik - 16 C4|16 56.04 cM ETS transcription factor protein-coding 625690 Gm6613 EG625690 - 10|10 C1 predicted gene 6613 protein-coding 105244568 XR_867687 Gm40161 - - 3 H2|3 predicted gene, 40161 ncRNA 75394 Mm.395061 NR_040757 ENSMUSG00000087341 0610040F04Rik - - 6|6 E1-E2 RIKEN cDNA 0610040F04 gene ncRNA 106780812 Obox4-ps6 Gm20710 - 7 A1|7 8.33 cM oocyte specific homeobox 4, pseudogene 6 pseudo 69287 Mm.56404 NM_027019 ENSMUSG00000025482 Odf3 1700011O04Rik|SHIPPO1 - 7|7 F4 outer dense fiber of sperm tails 3 protein-coding 442829 Mm.348215 NM_001002787 ENSMUSG00000070999 Ccin 4933417A14Rik - 4|4 B1 calicin protein-coding 114314 Im1 Im|Lch8-60 - 8 62.82 cM Immunoregulatory 1 unknown 56183 Mm.154879 NM_019515 ENSMUSG00000029236 Nmu - - 5|5 C3.3 neuromedin U protein-coding 108168512 Gm46704 - - Y B|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 107181356 Gm26566 - - - predicted gene, 26566 protein-coding 626348 Gm6668 EG626348 - X|X A5 high mobility group box 1-like pseudogene pseudo 12941 Mm.308500 NM_009959 ENSMUSG00000103092 Pcdha5 Cnr6|Crnr6 - 18|18 B2-B3 protocadherin alpha 5 protein-coding 85222 D15Mit162 - - 15 6.63 cM DNA segment, Chr 15, Massachusetts Institute of Technology 162 unknown 109280104 LOC109280104 Mm1314 - - VISTA enhancer mm1314 biological-region 61906 D2Mit449 - - 2 74.83 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 449 unknown 102467336 n-TLcag6 n-Tl18 - 1 H3|1 nuclear encoded tRNA leucine 6 (anticodon CAG) tRNA 628856 Mm.429095 Gm9909 - - 8 E2|8 predicted gene 9909 unknown 735282 NR_030478 ENSMUSG00000070077 Mir491 Mirn491|mir-491|mmu-mir-491 - 4 C4|4 microRNA 491 ncRNA 78201 Mm.310587 4930546O09Rik - - 16|16 B5 RIKEN cDNA 4930546O09 gene unknown 665407 Rpl5-ps1 EG665407|Gm7625 - 1|1 A3 ribosomal protein L5, pseudogene 1 pseudo 105246369 XR_877181 Gm41667 - - 18 A1|18 predicted gene, 41667 ncRNA 19501 Rb(16.17)8Lub Rb8Lub - - Robertsonian translocation, Chr 16 and 17, Lubeck 8 other 666874 Gm8340 EG666874 - 14 A1|14 ribosomal protein L3 pseudogene pseudo 404255 Mrgprc7-ps MrgC7 - 7|7 B4 MAS-related GPR, member C7, pseudogene pseudo 52347 D1Ertd564e - - 1 42.59 cM DNA segment, Chr 1, ERATO Doi 564, expressed unknown 723912 NR_029883 ENSMUSG00000065428 Mir382 Mirn382|mir-382|mmu-mir-382 - 12 F1|12 microRNA 382 ncRNA 100036282 Tailq4 - - - tail length QTL 4 unknown 77707 Mm.393410 9130604C24Rik AW554730 - 5|5 RIKEN cDNA 9130604C24 gene protein-coding 13834 epf - - - epileptiform unknown 61869 D1Mit350 - - - DNA segment, Chr 1, Massachusetts Institute of Technology 350 unknown 19763 Mm.20343 NM_009066 ENSMUSG00000024325 Ring1 Ring1A - 17|17 B1 ring finger protein 1 protein-coding 252966 Mm.386884 NM_145851 ENSMUSG00000038990 Cables2 ik3-2 - 2|2 H4 CDK5 and Abl enzyme substrate 2 protein-coding 100035039 Nstr1 - - - nerve sheath tumor resistance QTL 1 unknown 13509 dscb dsc - - declival sulcus of cerebellum unknown 629643 Mif-ps9 EG629643|Gm6990 - 19|19 D2 macrophage migration inhibitory factor, pseudogene 9 pseudo 71928 Mm.285871 2310047K21Rik AV090227 - 2|2 E2 RIKEN cDNA 2310047K21 gene protein-coding 22671 Mm.89201 NM_009548 ENSMUSG00000010086 Rnf112 ZNF179|Zfp179|bfp|neurolastin - 11 B2|11 37.96 cM ring finger protein 112 protein-coding 723844 NR_029767 ENSMUSG00000065600 Mir338 Mirn338|mir-338|mmu-mir-338 - 11|11 E2 microRNA 338 ncRNA 100034804 Lmr6 - - 11 5.78 cM leishmaniasis resistance 6 unknown 102634047 XR_378834 Gm31727 Gm45306 - 8 A2|8 predicted gene, 31727 ncRNA 105243979 XR_872365 Gm39678 - - 11 A4|11 predicted gene, 39678 ncRNA 353190 Mm.268104 NM_153799 ENSMUSG00000038957 Edc3 AA517853|Lsm16|Yjdc - 9|9 B enhancer of mRNA decapping 3 protein-coding 100043625 Gm4557 - - 7 A3|7 predicted gene 4557 pseudo 216795 Mm.218794 NM_139298 ENSMUSG00000000126 Wnt9a Wnt14 - 11|11 B1.3 wingless-type MMTV integration site family, member 9A protein-coding 66700 Mm.181278 NM_025783 ENSMUSG00000053119 Chmp3 25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24 - 6 C1|6 32.17 cM charged multivesicular body protein 3 protein-coding 78894 Mm.431573 NM_030210 ENSMUSG00000029482 Aacs 2210408B16Rik|SUR5 - 5|5 G1.1 acetoacetyl-CoA synthetase protein-coding 102632151 XR_376956 Gm30301 Gm42746 - 5 C1|5 predicted gene, 30301 ncRNA 404413 Olfr662-ps1 GA_x5J8B7W3SPQ-59383-59030|MOR34-13_p - 7|7 E3 olfactory receptor 662, pseudogene 1 pseudo 67828 Mm.158176 NM_026394 ENSMUSG00000042124 Lce1f 1110055J05Rik - 3|3 F1 late cornified envelope 1F protein-coding 100038751 Gm9967 - - - predicted gene 9967 protein-coding 102633951 XM_006540453 Gm31649 - - 7 A1|7 predicted gene, 31649 protein-coding 100093671 Trnaq-cug - - - transfer RNA glutamine (anticodon CUG) tRNA 434040 Igkv8-28 Gm10884 - 6|6 C1 immunoglobulin kappa variable 8-28 other 100417311 Gm17070 - - 14|14 C1 crumbs homolog 1 pseudogene pseudo 286951 Mm.261701 XR_387075 Eif2c5 Ago5 - X|X F1 eukaryotic translation initiation factor 2C, 5 protein-coding 100124396 Traj7 Gm16919 - 14|14 C2 T cell receptor alpha joining 7 other 12144 Mm.12932 NM_007550 ENSMUSG00000030528 Blm - - 7 D2|7 45.65 cM Bloom syndrome, RecQ like helicase protein-coding 105243094 XR_870063 Gm39117 Gm44612 - 7 F5|7 predicted gene, 39117 ncRNA 76824 Mm.30153 NM_029759 ENSMUSG00000046671 Mtfr1l 2410166I05Rik|AI480750|Fam54b - 4|4 D3 mitochondrial fission regulator 1-like protein-coding 56752 Mm.292539 NM_019993 ENSMUSG00000026687 Aldh9a1 AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh - 1|1 H2.3 aldehyde dehydrogenase 9, subfamily A1 protein-coding 14733 Mm.297976 NM_016696 ENSMUSG00000034220 Gpc1 AI462976 - 1|1 D glypican 1 protein-coding 14371 Mm.6256 NM_010246 ENSMUSG00000049551 Fzd9 mfz9 - 5 G2|5 75.08 cM frizzled class receptor 9 protein-coding 102465657 NR_106051 ENSMUSG00000098473 Mir7083 Gm27888|mmu-mir-7083 - 9|9 A3 microRNA 7083 ncRNA 18171 Mm.8509 NM_010936 ENSMUSG00000022809 Nr1i2 PXR|PXR.1|PXR.2|PXR1|SXR|mPXR - 16|16 B3 nuclear receptor subfamily 1, group I, member 2 protein-coding 105245616 XR_873886 Gm41046 - - 13 D1|13 predicted gene, 41046 ncRNA 74149 Mm.30767 NM_198003 ENSMUSG00000071266 Zfp946 1300003B13Rik - 17|17 A3.3 zinc finger protein 946 protein-coding 110842 Mm.290853 NM_145615 ENSMUSG00000032314 Etfa 2010200I21Rik|D9Ertd394e - 9|9 B electron transferring flavoprotein, alpha polypeptide protein-coding 103889 Mm.281153 NM_134032 ENSMUSG00000075588 Hoxb2 AI894218|Hox-2.8|Hoxbes2 - 11 D|11 59.85 cM homeobox B2 protein-coding 258929 Mm.377752 NM_146927 ENSMUSG00000094734 Olfr799 MOR114-2 - 10|10 D3 olfactory receptor 799 protein-coding 62373 D11Mit97 - - 11 50.9 cM DNA segment, Chr 11, Massachusetts Institute of Technology 97 unknown 673902 Vmn1r-ps74 Gm9607 - 7 A3|7 vomeronasal 1 receptor, pseudogene 74 pseudo 432723 Mm.67576 NM_001004168 Gm5444 EG432723 - 13 A1|13 predicted gene 5444 unknown 668837 Gm9391 EG668837 - 14|14 E4 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g pseudogene pseudo 668882 Gm9415 EG668882 - 3|3 H1 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 pseudogene pseudo 102638760 XR_383480 Gm35247 - - 14 D1|14 predicted gene, 35247 ncRNA 100043314 Mm.390896 NM_001146325 ENSMUSG00000071552 Tigit Vstm3 - 16|16 B4 T cell immunoreceptor with Ig and ITIM domains protein-coding 319967 9630019E01Rik - - 2|2 RIKEN cDNA 9630019E01 gene protein-coding 102641964 XR_001785033 Gm38587 - - 5 G3|5 predicted gene, 38587 ncRNA 85163 D1Mit530 - - 1 28.72 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 530 unknown 114276 Manz12 QTL-C17.1 - - mandible size 12 unknown 109363675 LOC109363675 - - - Bmp2 5' regulatory region biological-region 68468 Mm.215096 NM_023463 ENSMUSG00000092586 Ly6g6c 1110003M04Rik|AU016360|G6c|NG24 - 17|17 B1 lymphocyte antigen 6 complex, locus G6C protein-coding 666963 Gm8385 EG666963 - 12|12 D1 acyl-CoA thioesterase 5 pseudogene pseudo 102638346 XR_377949 Gm34933 Gm44398 - 6 E1|6 predicted gene, 34933 ncRNA 97433 T25629 - - - expressed sequence T25629 unknown 100039052 Mm.431321 NM_001177574 ENSMUSG00000113971 Gm2022 - - 12 D2|12 predicted pseudogene 2022 protein-coding 100526497 NR_105742 ENSMUSG00000077113 Mir466p mmu-mir-466p - 2 A1|2 8.22 cM microRNA 466p ncRNA 108995 Mm.288312 NM_178650 ENSMUSG00000040247 Tbc1d10c 1810062O14Rik|AI428527 - 19|19 A TBC1 domain family, member 10c protein-coding 21080 T(14;15)6Ca T6Ca - - reciprocal translocation, Chr 14 and 15, Carter 6 other 622473 Mm.391312 NM_001037915 ENSMUSG00000072945 Ripply1 - - X|X F1 ripply transcriptional repressor 1 protein-coding 100862314 Mm.431329 NM_001270685 ENSMUSG00000095770 Gm21637 - - X A3.1|X predicted gene, 21637 protein-coding 239408 Mm.41219 NM_175502 ENSMUSG00000054409 Tmem74 AA549547|B230382K22Rik - 15|15 B3.2 transmembrane protein 74 protein-coding 19460 Rb(10.12)17Rma Rb17Rma - - Robertsonian translocation, Chr 10 and 12, Universita di Roma 17 other 20116 Mm.260904 NM_009098 ENSMUSG00000047675 Rps8 - - 4|4 D1 ribosomal protein S8 protein-coding 74529 Mm.400519 NR_045373 8430422H06Rik - - 18|18 A1 RIKEN cDNA 8430422H06 gene ncRNA 433865 Gm5552 EG433865 - 5|5 B1 predicted gene 5552 pseudo 69729 Mm.233452 NR_045496 ENSMUSG00000085860 2410003L11Rik - - 11|11 D RIKEN cDNA 2410003L11 gene ncRNA 404246 Mrgpra13 MrgA13 - - MAS-related GPR, member A13 protein-coding 75671 Mm.23377 NM_029381 ENSMUSG00000012211 Tex22 1700028O09Rik|AV210422|Tep22 - 12|12 F1 testis expressed gene 22 protein-coding 674228 Gm9616 - - 13 A1|13 ribosomal protein S4, X-linked pseudogene pseudo 30919 AI316844 - - 14 C3|14 EST AI316844 unknown 100035675 Elyms2 - - - ENU induced lymphoma susceptibility 2 unknown 209268 Mm.110505 NM_177591 ENSMUSG00000031111 Igsf1 5330413N23|5530402E03|AI747649|InhBP/p120|mKIAA0364 - X|X A5 immunoglobulin superfamily, member 1 protein-coding 73788 NM_175203 4833408A19Rik - - 19|19 A RIKEN cDNA 4833408A19 gene unknown 67470 Mm.26581 NM_026180 ENSMUSG00000024254 Abcg8 1300003C16Rik|AI114946|sterolin-2 - 17 E4|17 55.02 cM ATP binding cassette subfamily G member 8 protein-coding 102639569 Gm35849 - - 5|5 predicted gene, 35849 ncRNA 102640226 LOC102640226 - - 12 C1 DNA-directed RNA polymerases I, II, and III subunit RPABC3 pseudogene pseudo 433577 LOC433577 - - 3|3 B uncharacterized LOC433577 unknown 26936 Mm.2402 NM_012027 ENSMUSG00000005417 Mprip 9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip - 11|11 B1.3 myosin phosphatase Rho interacting protein protein-coding 100504127 Gm17690 - - 3|3 41.65 cM predicted gene, 17690 ncRNA 229593 Mm.245830 NM_146133 ENSMUSG00000046519 Golph3l 2010204I15Rik|AU015439|AW549227|C77637|Gpp34r - 3|3 F2.1 golgi phosphoprotein 3-like protein-coding 74112 Mm.152941 NM_024258 ENSMUSG00000025616 Usp16 1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM - 16|16 C3.3 ubiquitin specific peptidase 16 protein-coding 100043828 Gm4678 - - 14|14 E4 predicted gene 4678 pseudo 777669 Ighd5-8 Gm17537 - 12|12 F1 immunoglobulin heavy diversity 5-8 pseudo 105243712 XR_878208 Gm39529 - - X D|X predicted gene, 39529 ncRNA 16709 Mm.3110 NM_008477 ENSMUSG00000021843 Ktn1 - - 14|14 C1 kinectin 1 protein-coding 102639184 LOC102639184 - - 10 C1 uncharacterized protein C12orf73 homolog pseudo 404516 Olfr1456-ps1 GA_x5J8B7W6KF8-5957071-5957489 - 19|19 A olfactory receptor 1456, pseudogene 1 pseudo 105246422 XR_877360 Gm41712 - - 18 B3|18 predicted gene, 41712 ncRNA 61910 D2Mit455 - - 2 84.39 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 455 unknown 666372 Gm8066 EG666372 - 5|5 G2 predicted gene 8066 protein-coding 102639315 LOC102639315 - - 17 A1 uncharacterized protein C3orf18 homolog pseudogene pseudo 105245752 XR_874620 Gm41151 - - 14 C2|14 predicted gene, 41151 ncRNA 27697 23H6.T7 - - - DNA segment, 23H6.T7 (Roswell Park) unknown 667415 Phf2os1 EG667415|Gm8619 - 13|13 A5 PHD finger protein 2, opposite strand 1 protein-coding 22140 tu - - - toe-ulnar unknown 623591 Gm6441 EG623591 - X|X F2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 101056018 Gm28859 - - Y|Y predicted gene 28859 protein-coding 100038366 Mm.450597 Gm10405 - - - predicted gene 10405 unknown 105247145 XR_881360 Gm42297 - - 4 C2|4 predicted gene, 42297 ncRNA 110486 Tcra-V4.5 - - - T cell receptor alpha, variable 4.5 other 75403 Mm.427742 1010001B22Rik AW987535 - 5|5 RIKEN cDNA 1010001B22 gene protein-coding 109414 Aaiq4 - - - aromatase activity QTL 4 unknown 100040882 Mm.272869 NR_040445 ENSMUSG00000037884 1700017G19Rik - - 3|3 B RIKEN cDNA 1700017G19 gene ncRNA 77276 Mm.253771 9430022A06Rik - - 2|2 RIKEN cDNA 9430022A06 gene protein-coding 100126879 Gm10759 - - - predicted gene 10759 unknown 105244238 XR_866562 Gm39881 - - 2 E1|2 predicted gene, 39881 ncRNA 68795 Mm.314576 NM_177783 ENSMUSG00000044308 Ubr3 1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650 - 2|2 C2 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 100503170 Gm15472 - - 3|3 45.52 cM predicted gene 15472 unknown 67605 Mm.148007 NM_026270 ENSMUSG00000011096 Akt1s1 1110012J22Rik|AI227026|Lobe|Lobel|PRAS40 - 7|7 B3 AKT1 substrate 1 (proline-rich) protein-coding 116955 Bulb3 Bulb11a - - bulb size 3 unknown 100043564 Gm4521 - - 16 B1|16 BMP2 inducible kinase pseudogene pseudo 100036107 Chlq5 - - 8 43.17 cM circulating hormone level QTL 5 unknown 282621 D15Kus2 - - - DNA segment, Chr 15, Kusakabe 2 unknown 12580 Mm.1912 NM_007671 ENSMUSG00000028551 Cdkn2c C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c - 4 C7|4 51.32 cM cyclin dependent kinase inhibitor 2C protein-coding 100036259 Hrq5 - - - heart rate QTL 5 unknown 100416070 Gm15901 - - 12|12 B3 Nanog homeobox pseudogene pseudo 105246950 Gm42143 - - 5|5 predicted gene, 42143 ncRNA 100628603 NR_039596 ENSMUSG00000093270 Mir5134 mir-5134|mmu-mir-5134|mu-mir-5134 - 17 12.33 cM|17 A3.3 microRNA 5134 ncRNA 629389 Gm6970 EG629389 - 19|19 C3 histone cluster 1, H1b pseudogene pseudo 621312 Mm.440756 XR_002190 ENSMUSG00000091577 Gm6211 EG621312 - 13 D1|13 predicted gene 6211 unknown 108168940 XR_001784283 LOC108168940 - - 4 B1 uncharacterized LOC108168940 ncRNA 226418 Mm.106553 NM_178691 ENSMUSG00000046404 Yod1 6330564D18Rik|9930028C20Rik|Hshin7 - 1|1 E4 YOD1 deubiquitinase protein-coding 330953 Mm.151967 NM_001081192 ENSMUSG00000032338 Hcn4 Bcng3|Hcn3 - 9|9 B hyperpolarization-activated, cyclic nucleotide-gated K+ 4 protein-coding 629758 Gm7002 100043579|Gm4531 - 12|12 A3 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 28014 D9Wsu149 D9Wsu149e - 9|9 B DNA segment, Chr 9, Wayne State University 149 pseudo 384978 Gm5372 EG384978 - 9|9 F1 predicted gene 5372 pseudo 258235 Mm.314795 NM_207135 ENSMUSG00000110804 Olfr1084 MOR192-2|MOR192-3 - 2|2 D olfactory receptor 1084 protein-coding 384422 Mm.333124 Igk-V8 B128L|B55L|IgK - 6 C1|6 immunoglobulin kappa chain variable 8 (V8) other 70184 2310066N15Rik - - 16|16 RIKEN cDNA 2310066N15 gene protein-coding 56696 Mm.20455 NM_019925 ENSMUSG00000021298 Gpr132 G2a - 12|12 F1 G protein-coupled receptor 132 protein-coding 14167 Mm.7996 NM_010199 ENSMUSG00000022523 Fgf12 AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1 - 16 B2|16 19.38 cM fibroblast growth factor 12 protein-coding 667745 Gm8790 EG667745 - 1|1 E4 predicted gene 8790 pseudo 723991 Igkv4-52 - - 6|6 C1 immunoglobulin kappa chain variable 4-52 other 105242428 Mm.394766 XR_882608 Gm21847 Gm38698 - 5 A2|5 predicted gene, 21847 ncRNA 71573 9130025I19Rik - - 1|1 RIKEN cDNA 9130025I19 gene protein-coding 110949 Atp5g1-rs4 - - - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C (subunit 9), isoform 1, related sequence 4 protein-coding 62362 D13Mit300 - - 13 3.38 cM DNA Segment, Chr 13 Massachusetts Institute of Technology 300 unknown 104797374 NR_130344 ENSMUSG00000095536 Gm25285 Mir466c-3|mmu-mir-466c-3 - 2|2 A1 predicted gene, 25285 ncRNA 67304 Mm.474382 NM_026084 ENSMUSG00000074635 3110070M22Rik - - 13|13 D2.3 RIKEN cDNA 3110070M22 gene ncRNA 61289 D2Mit278 - - 2 62.07 cM DNA segment, Chr 2, Massachusetts Institute of Technology 278 unknown 353237 Mm.308500 NM_001003672 ENSMUSG00000102697 Pcdhac2 CNRc2 - 18|18 B3 protocadherin alpha subfamily C, 2 protein-coding 111664 Iap11-2 Iap(Hox-2.4) - - intracisternal A particles, Hoxb8 linked other 665799 Gm7790 EG665799 - X|X E3 predicted gene 7790 pseudo 242151 Mm.245155 NM_001081140 ENSMUSG00000042861 Kcna10 Gm1962|Kcna8|Kv1.8 - 3 F2.3|3 46.64 cM potassium voltage-gated channel, shaker-related subfamily, member 10 protein-coding 18704 Mm.3810 NM_011083 ENSMUSG00000030660 Pik3c2a Cpk-m|PI3KC2 - 7 F1|7 61.62 cM phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 227801 Mm.314245 NM_146122 ENSMUSG00000035392 Dennd1a 6030446I19Rik|connecdenn - 2|2 B DENN/MADD domain containing 1A protein-coding 102954 Mm.426101 NM_001031664 ENSMUSG00000073293 Nudt10 AI853080|Dipp3a - X|X A1.1 nudix (nucleoside diphosphate linked moiety X)-type motif 10 protein-coding 27535 D15N9 51E19T7 - - DNA segment, Ch 15, NIH 9 unknown 71247 Mm.399586 NR_040685 ENSMUSG00000105490 4933438B17Rik - - 5|5 G1.2 RIKEN cDNA 4933438B17 gene ncRNA 66284 Mm.46446 NM_025467 ENSMUSG00000030049 Gkn2 1810036H07Rik|Bricd1b - 6|6 D1 gastrokine 2 protein-coding 12427 Mm.4815 NM_007628 ENSMUSG00000027793 Ccna1 - - 3|3 C cyclin A1 protein-coding 105245201 XR_871813 Gm40687 - - 10 B5.3|10 predicted gene, 40687 ncRNA 665291 Gm7572 EG665291 - 16|16 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 63006 D15Mit270 - - 15 27.16 cM DNA Segment, Chr 15, Massachusetts Institute of Technology 270 unknown 62432 D15Mit224 - - 15 3.82 cM DNA Segment, Chr 15, Massachusetts Institute of Technology 224 unknown 102632594 Mm.224163 XR_874396 A330001L22Rik AI645472|C130012C08Rik - 14|14 A3 RIKEN cDNA A330001L22 gene ncRNA 16738 L1Md-Tf6 - - - L1 repeat, Tf subfamily, member 6 other 100039123 Mm.389409 NM_001205057 ENSMUSG00000078877 Gm14295 - - 2 H4|2 predicted gene 14295 protein-coding 102631677 XR_388044 Gm29955 - - 8 E1|8 predicted gene, 29955 ncRNA 18222 Mm.4390 NM_010949 ENSMUSG00000021224 Numb Nb - 12|12 D1 NUMB endocytic adaptor protein protein-coding 108167305 LOC108167305 - - 6 B1 Clec2l Hedgehog-responsive enhancer biological-region 100503956 LOC100503956 - - - EVI5-like protein-like protein-coding 100035884 Bntq7 - - - bone traits QTL 7 unknown 64931 Mm.86738 NM_022888 ENSMUSG00000031933 Izumo1r 0910001L11Rik|C86255|Folbp3|Folr4|Juno - 9|9 A2 IZUMO1 receptor, JUNO protein-coding 235966 Gm4898 EG235966 - 10|10 D1 THO complex 4 pseudogene pseudo 108167512 XR_001778371 LOC108167512 - - 7 E1 uncharacterized LOC108167512 ncRNA 207140 Bbaa23 Bb23 - 4 47.21 cM B.burgdorferi-associated arthritis 23 unknown 102640732 Gm29121 - - Y|Y predicted gene 29121 ncRNA 492849 Sbnt2 - - 13 24.5 cM spacial bias during navigation task 2 unknown 102636602 XR_390569 Gm12496 - - 4 B2|4 28.65 cM predicted gene 12496 ncRNA 72767 Mm.482583 2810427A07Rik - - 17|17 RIKEN cDNA 2810427A07 gene protein-coding 665713 Gm7754 EG665713 - 12|12 C1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit pseudogene pseudo 102637193 XR_865993 Gm13348 - - 2 A3|2 13.73 cM predicted gene 13348 ncRNA 13496 Mm.301282 NM_007880 ENSMUSG00000019564 Arid3a Bright|Dri1|Dril1 - 10|10 C1 AT rich interactive domain 3A (BRIGHT-like) protein-coding 100035902 Ses7 - - 2 65.18 cM salmonella enteritidis susceptibility 7 unknown 13241 Mm.425522 Defa7 Defa30|Defcr7 - 8|8 defensin, alpha, 7 protein-coding 93968 Mm.439698 NM_053151 Klra21 Klra-ps1|Ly49H|Ly49u - 6|6 F3 killer cell lectin-like receptor subfamily A, member 21 protein-coding 258198 Mm.480307 NM_207695 ENSMUSG00000059279 Olfr224 MOR275-3|Olfr224-ps1|Olfr327-ps1 - 11|11 B1.3 olfactory receptor 224 protein-coding 102637433 Gm21765 - - Y|Y predicted gene, 21765 protein-coding 106495 AA516613 - - - expressed sequence AA516613 unknown 23792 Mm.124892 NM_011780 ENSMUSG00000025964 Adam23 AW046396|MDC3 - 1 C2|1 32.31 cM a disintegrin and metallopeptidase domain 23 protein-coding 105243946 Gm38058 - - 1|1 predicted gene, 38058 protein-coding 102638557 XM_011246166 Gm35091 - - 16 C3.3|16 predicted gene, 35091 protein-coding 105245993 Gm41360 - - 15|15 predicted gene, 41360 ncRNA 75805 Mm.127692 NM_029447 ENSMUSG00000021710 Nln 4930472G13Rik|C79345 - 13|13 D1 neurolysin (metallopeptidase M3 family) protein-coding 170770 Mm.7660 NM_133234 ENSMUSG00000002083 Bbc3 PUMA|PUMA/JFY1 - 7|7 A2 BCL2 binding component 3 protein-coding 20529 Mm.248637 NM_175090 ENSMUSG00000066150 Slc31a1 4930445G01Rik|AI787263|AU016967|Ctr1 - 4|4 B3 solute carrier family 31, member 1 protein-coding 105405 BB124184 - - - expressed sequence BB124184 unknown 105244167 Gm39825 - - 11|11 predicted gene, 39825 ncRNA 14860 Mm.2662 NM_010357 ENSMUSG00000032348 Gsta4 GST5.7|mGsta4 - 9|9 E1 glutathione S-transferase, alpha 4 protein-coding 111838 Iapls1-30 - - - intracisternal A particle, lymphocyte specific 1-30 other 100885823 NR_049184 ENSMUSG00000105210 Mir3544 mir-3544|mmu-mir-3544 - 12|12 F1 microRNA 3544 ncRNA 242100 Mm.297406 NM_207247 ENSMUSG00000042244 Pglyrp3 Gm420 - 3|3 F1 peptidoglycan recognition protein 3 protein-coding 102466637 NR_105796 ENSMUSG00000098315 Mir21b Gm27951|mmu-mir-21b - 3|3 A3 microRNA 21b ncRNA 102637545 XR_386139 Gm34327 - - 18 B1|18 predicted gene, 34327 ncRNA 72221 Mm.46132 NM_028158 ENSMUSG00000027518 1700021F07Rik - - 2|2 H3 RIKEN cDNA 1700021F07 gene protein-coding 70093 Mm.41438 NM_027315 ENSMUSG00000042572 Ube2q1 1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q - 3|3 F1 ubiquitin-conjugating enzyme E2Q family member 1 protein-coding 21804 Mm.3248 NM_009365 ENSMUSG00000030782 Tgfb1i1 ARA55|Hic5|TSC-5|hic-5 - 7|7 F3 transforming growth factor beta 1 induced transcript 1 protein-coding 109331 Mm.24765 NM_182999 ENSMUSG00000028309 Rnf20 4833430L21Rik|AW540162|C79397|mKIAA4116 - 4|4 B1 ring finger protein 20 protein-coding 21276 T(8C3;16B5)164Dn T(8;16)164Dn|T164Dn - - reciprocal translocation, Chr 8, cytogenetic band C3; and Chr 16, cytogenetic band B5, Davisson 164 other 328977 Mm.286232 NM_207255 ENSMUSG00000042439 Zfp532 C530030I18Rik|Znf532|mKIAA1629 - 18|18 E1 zinc finger protein 532 protein-coding 105734733 Mm.419845 NM_001308487 ENSMUSG00000078518 Gm13030 - - 4 D3|4 70.57 cM predicted gene 13030 protein-coding 111503 Pmv1 Pmv-1 - - polytropic murine leukemia virus 1 other 13277 Del(14)28H Del28H - - deletion, Chr 14, Harwell 28 other 433940 Mm.194212 NM_001004180 ENSMUSG00000041930 Fam222a - - 5|5 F family with sequence similarity 222, member A protein-coding 111926 Iap3rb12 - - - intracisternal A-type particle, U3 region, SINE repeat b-12 other 103288 Mm.396727 AI836737 - - - expressed sequence AI836737 unknown 628801 Gm6918 EG628801 - 12|12 E serine (or cysteine) preptidase inhibitor, clade A, member 1B pseudogene pseudo 116816 Frp1 Frp-1 - 4 34.92 cM free running period 1 unknown 108167989 XM_017315308 Gm46340 - - 12 A1.3|12 predicted gene, 46340 protein-coding 100417647 Gm18736 - - 17|17 E1.1 mitochondrial ribosomal protein S10 pseudogene pseudo 102638436 Mm.261793 NR_110488 ENSMUSG00000106519 Gm38509 Peril - 3 A3|3 predicted gene, 38509 ncRNA 404558 AL118003 - - - expressed sequence AL118003 unknown 110532 Mm.276815 NM_130895 ENSMUSG00000020262 Adarb1 1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1 - 10 C1|10 39.72 cM adenosine deaminase, RNA-specific, B1 protein-coding 61141 D9Mit335 - - 9 32.01 cM DNA Segment, Chr 9 Massachusetts Institute of Technology 335 unknown 105245076 XR_873039 Gm40578 - - 12 F1|12 predicted gene, 40578 ncRNA 97859 Mm.24963 C77681 - - - expressed sequence C77681 protein-coding 270201 Mm.41744 NM_177771 ENSMUSG00000054792 Klhl18 A930041K15|AW545966 - 9|9 F2 kelch-like 18 protein-coding 102632833 XR_376868 Gm30802 - - 5 B2|5 predicted gene, 30802 ncRNA 21824 Mm.24096 NM_009378 ENSMUSG00000074743 Thbd AI385582|CD141|TM - 2 G3|2 73.45 cM thrombomodulin protein-coding 105246282 Gm41586 - - 17|17 predicted gene, 41586 ncRNA 244237 Mm.247498 NM_175649 ENSMUSG00000045362 Tnfrsf26 Tnfrh3|Tnfrsf24 - 7 F5|7 88.26 cM tumor necrosis factor receptor superfamily, member 26 protein-coding 102640113 XR_391601 Gm36260 - - 7 C|7 predicted gene, 36260 ncRNA 17256 Mm.329083 NM_010787 ENSMUSG00000002768 Mea1 Mea-1 - 17 C|17 22.9 cM male enhanced antigen 1 protein-coding 100049611 Fmtq7 - - - femur mechanical trait QTL 7 unknown 105242407 XR_376017 Gm38684 - - 3 G1|3 predicted gene, 38684 ncRNA 100418282 Gm19116 - - 10|10 B5.1 transmembrane emp24-like trafficking protein 10 pseudogene pseudo 100861730 XM_017318705 Gm21170 - - Y C1|Y predicted gene, 21170 protein-coding 105243687 XR_878115 Gm39517 - - X A6|X predicted gene, 39517 ncRNA 100124447 NR_030572 ENSMUSG00000077021 Mir467d Mirn467d|mir-467d - 2 A1|2 microRNA 467d ncRNA 244595 Mm.390089 NM_001013764 ENSMUSG00000071047 Ces1a Ces1l|EG244595|Gm4976 - 8|8 C5 carboxylesterase 1A protein-coding 100036146 Bwnd5wk3 - - - body weight, NMR1 x DBA, 5 week, QTL 3 unknown 108168208 XM_017316351 ENSMUSG00000109649 Gm45521 - - 14 A1|14 predicted gene 45521 protein-coding 100036458 Bmd1b BMD1-2 - 1 80.13 cM bone mineral density 1b unknown 102637697 Gm34440 - - 14 A2|14 predicted gene, 34440 pseudo 61030 D7Mit191 - - 7 9.38 cM DNA segment, Chr 7, Massachusetts Institute of Technology 191 unknown 100503608 Gm17366 - - 14|14 56.16 cM putative overexpressed in colon carcinoma 1 protein homolog pseudo 102636892 XR_374568 Gm33841 - - 2 C1.3|2 predicted gene, 33841 ncRNA 102640780 XR_880433 Gm36764 - - 5 E2|5 predicted gene, 36764 ncRNA 105242612 Mm.406277 XR_868829 Gm26627 - - 6 A3.3|6 predicted gene, 26627 ncRNA 100035265 Earheal3 - - 12 44.93 cM ear healing QTL 3 unknown 100310809 Mm.293030 NM_001354753 Gm10509 - - 17 A3.2|17 11.4 cM predicted gene 10509 protein-coding 100534347 LOC100534347 - - 7|7 D3 retinoblastoma binding protein 6, ubiquitin ligase pseudogene pseudo 18383 Mm.15383 NM_008764 ENSMUSG00000063727 Tnfrsf11b OCIF|Opg|TR1 - 15|15 D1 tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin) protein-coding 100043918 XM_006536385 LOC100043918 - - - C-C motif chemokine 19-like protein-coding 61924 D4Mit313 - - 4 83.77 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 313 unknown 85048 D7Mit77 - - 7 15.94 cM DNA segment, Chr 7, Massachusetts Institute of Technology 77 unknown 100040244 Gm14698 - - X A7.1|X serine/threonine/tyrosine interaction protein pseudogene pseudo 100035461 Imab2 - - - intermale aggressive behavior 2 unknown 100041680 Gm3470 - - 5 E3|5 predicted gene 3470 pseudo 67217 Mm.286120 NM_026038 ENSMUSG00000019718 L3hypdh 2810055F11Rik - 12|12 C3 L-3-hydroxyproline dehydratase (trans-) protein-coding 666303 Gm8036 EG666303 - X F1|X predicted gene 8036 pseudo 73679 Mm.390423 NM_028602 ENSMUSG00000039329 Tex19.1 2410081M02Rik|Tex19|Tex19a|mTex19.1 - 11|11 E2 testis expressed gene 19.1 protein-coding 102638000 XR_388006 Gm34675 - - 8 D3|8 predicted gene, 34675 ncRNA 628477 Gm6883 EG628477 - 18|18 C ribosomal protein L6 pseudogene pseudo 102636085 Mm.414334 XR_385025 Gm33255 - - 16 C3.3|16 predicted gene, 33255 ncRNA 99627 Mm.354628 AI447881 - - - expressed sequence AI447881 protein-coding 76367 Mm.330796 NM_023815 ENSMUSG00000042854 Trp53rkb 2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p - 2|2 H3 transformation related protein 53 regulating kinase B protein-coding 112395 Mnek1b - - - modifier of Nek1 (NIMA-related expressed kinase 1, hematocrit unknown 109868 Rrv1 Rrv-1 - - resistance to RadLV 1 protein-coding 16830 Ldha-ps2 Ldh-1ps2|Ldh1-ps2 - 4|4 D2.1 lactate dehydrogenase A, pseudogene 2 pseudo 101206 Mm.266811 NM_133932 ENSMUSG00000048930 Tada3 1110004B19Rik|ADA3|AI987856|Tada3l - 6|6 E3 transcriptional adaptor 3 protein-coding 665125 Gm7504 EG665125 - 6|6 B1 predicted gene 7504 pseudo 102465884 NR_106166 ENSMUSG00000098286 Mir8091 Gm27575|mmu-mir-8091 - 19|19 C3 microRNA 8091 ncRNA 621020 Gm6198 EG621020 - 1|1 C5 R3H domain containing 2 pseudogene pseudo 100124457 NR_030605 ENSMUSG00000078057 Mir873a Mir873|Mirn873|mir-873a|mmu-mir-873|mmu-mir-873a - 4 A5|4 microRNA 873a ncRNA 78376 Mm.390966 NM_023893 ENSMUSG00000036185 Sapcd1 2810436B06Rik|G7d|Ng23 - 17|17 B1 suppressor APC domain containing 1 protein-coding 76681 Mm.458309 NM_023835 ENSMUSG00000066258 Trim12a 2310043C01Rik|Trim12 - 7|7 E3 tripartite motif-containing 12A protein-coding 675921 Mm.404316 NR_033493 ENSMUSG00000075265 Tnk2os Gm10818 - 16 B3|16 tyrosine kinase, non-receptor 2, opposite strand ncRNA 105246809 Gm42033 - - 8|8 predicted gene, 42033 ncRNA 735272 NR_030471 ENSMUSG00000076028 Mir669a-3 Mirn669a-3|mir-669a-3 - 2 A1|2 microRNA 669a-3 ncRNA 105245698 XR_874408 Gm41109 - - 14 A3|14 predicted gene, 41109 ncRNA 102636558 XM_006535875 LOC102636558 - - - component of Sp100-rs-like protein-coding 672302 Gm9556 - - 16 B3|16 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 16995 Mm.20853 NM_008519 ENSMUSG00000046908 Ltb4r1 BLT1|BLTR|Ltb4r|mBLTR - 14 C3|14 28.19 cM leukotriene B4 receptor 1 protein-coding 668255 Rps11-ps2 Gm11741 - 11|11 E2 ribosomal protein S11, pseudogene 2 pseudo 67089 Mm.18472 NM_025959 ENSMUSG00000021832 Psmc6 2300001E01Rik|AI451058 - 14|14 C1 proteasome (prosome, macropain) 26S subunit, ATPase, 6 protein-coding 12628 Mm.8655 NM_009888 ENSMUSG00000026365 Cfh Mud-1|NOM|Sas-1|Sas1 - 1 61.62 cM|1 F complement component factor h protein-coding 60973 D12Mit8 - - 12 62.1 cM DNA segment, Chr 12, Massachusetts Institute of Technology 8 unknown 77697 Mm.105182 NM_029956 ENSMUSG00000029575 Mmab 9130222L19Rik|ATR - 5|5 F methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human) protein-coding 102637010 XR_376154 Gm33925 - - 3 H1|3 predicted gene, 33925 ncRNA 666251 Amd-ps6 EG666251 - 9|9 A4 S-adenosylmethionine decarboxylase, pseudogene 6 pseudo 102631864 XR_385528 Gm30090 - - 17 A3.3|17 predicted gene, 30090 ncRNA 108168022 XR_001780668 Gm46371 - - 12 E|12 predicted gene, 46371 ncRNA 61003 D4Mit100 - - 4 5.72 cM DNA segment, Chr 4, Massachusetts Institute of Technology 100 unknown 380730 Mm.380214 NM_001033434 ENSMUSG00000034239 Gm884 LRRC37 - 11|11 E1 predicted gene 884 protein-coding 29836 Del(11)15Brd - - - deletion, Chr 11, Bradley 15 other 21026 T(1;8)63H T63H - - reciprocal translocation, Chr 1 and 8, Harwell 63 other 105246374 XR_877193 Gm41670 - - 18 A1|18 predicted gene, 41670 ncRNA 19581 Rb(5.6)1Ty Rb1Ty - - Robertsonian translocation, Chr 5 and 6, Taylor 1 other 105246821 XR_879227 Gm42045 - - 8 E1|8 predicted gene, 42045 ncRNA 100039762 Gm10293 - - 3|3 C glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 192098 Stheal1 Sth1 - - soft tissue heal 1 unknown 100861973 XM_006541690 ENSMUSG00000103919 Gm21366 - - Y A2|Y predicted gene, 21366 protein-coding 665055 Mm.425276 NR_152171 ENSMUSG00000098449 Gm7467 EG665055 - 5|5 C3.3 predicted gene 7467 ncRNA 53756 D13Hrb1 D13Ham1 - - DNA segment, Chr 13, Harbers 1 unknown 100035454 Psrs6 - - - psoriasis susceptibility 6 unknown 102636365 Gm33452 - - 7|7 predicted gene, 33452 ncRNA 232670 Mm.225289 NM_146173 ENSMUSG00000001763 Tspan33 1300010A20Rik|Pen - 6|6 A3.3 tetraspanin 33 protein-coding 11647 Mm.288186 NM_007431 ENSMUSG00000028766 Alpl ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP - 4 D3|4 70.02 cM alkaline phosphatase, liver/bone/kidney protein-coding 668633 Gm9280 EG668633 - 12|12 F2 60S ribosomal protein L5 pseudogene pseudo 751560 NR_030496 ENSMUSG00000076251 Mir501 Mirn501|mir-501|mmu-mir-501 - X A1.1|X microRNA 501 ncRNA 258278 Mm.377409 NM_146281 ENSMUSG00000051793 Olfr284 MOR160-4 - 15|15 F1 olfactory receptor 284 protein-coding 20834 Mm.76862 NM_011483 ENSMUSG00000044526 Znrf4 1700094M01Rik|Ssrzf1|spzn - 17|17 D zinc and ring finger 4 protein-coding 102632770 XR_373388 LOC102632770 - - 1 C1.1 ADP-ribosylation factor 1 pseudogene pseudo 108168870 XR_001783839 Gm43549 - - 3 C|3 predicted gene 43549 ncRNA 78106 Mm.243807 NR_110478 ENSMUSG00000106602 4930405L22Rik - - 5|5 B3 RIKEN cDNA 4930405L22 gene ncRNA 62320 D2Mit266 - - 2 103.83 cM DNA segment, Chr 2, Massachusetts Institute of Technology 266 unknown 108168692 XR_001782960 LOC108168692 - - - uncharacterized LOC108168692 ncRNA 20503 Mm.29161 NM_011391 ENSMUSG00000020102 Slc16a7 4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2 - 10|10 D3 solute carrier family 16 (monocarboxylic acid transporters), member 7 protein-coding 382913 Mm.239490 NM_201610 ENSMUSG00000035121 Neil2 Gm1212|NEH2 - 14|14 D1 nei like 2 (E. coli) protein-coding 67245 Mm.28957 NM_023324 ENSMUSG00000020134 Peli1 2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e - 11 A3.1|11 13.81 cM pellino 1 protein-coding 51951 D17Ertd96e - - 17 53.08 cM DNA segment, Chr 17, ERATO Doi 96, expressed unknown 257921 Mm.376113 NM_001011761 ENSMUSG00000075095 Olfr1229 MOR233-19|MOR233-22 - 2|2 E1 olfactory receptor 1229 protein-coding 233066 Mm.227325 NM_153577 ENSMUSG00000019737 Syne4 0610012K07Rik|AI428936|KASH4|Nesp4 - 7|7 B1 spectrin repeat containing, nuclear envelope family member 4 protein-coding 102639678 XR_384211 ENSMUSG00000116339 Gm35933 - - 15 D3|15 predicted gene, 35933 ncRNA 259057 Mm.223438 NM_147055 ENSMUSG00000044899 Olfr649 MOR31-7 - 7|7 E3 olfactory receptor 649 protein-coding 625286 Mm.158781 NM_001081310 ENSMUSG00000061531 Tmem236 2010003H20Rik|Fam23a|Gm613 - 2|2 A2 transmembrane protein 236 protein-coding 105244164 XM_011249343 LOC105244164 - - 11 B1.3 elastin-like protein-coding 328113 Mm.121286 A230055C15 - - 12|12 C1 uncharacterized protein A230055C15 protein-coding 320913 Mm.303179 NM_177291 Trdv2-2 Gm17015 - 14|14 C2 T cell receptor delta variable 2-2 other 258994 Mm.378629 NM_146992 ENSMUSG00000095928 Olfr204 MOR182-3 - 16|16 C1.3 olfactory receptor 204 protein-coding 102631590 Gm29888 - - 3|3 predicted gene, 29888 ncRNA 228536 Mm.330487 NM_001045523 ENSMUSG00000040007 Bahd1 AL022997|AW541238|Gm117|mKIAA0945 - 2|2 E5 bromo adjacent homology domain containing 1 protein-coding 78390 Mm.330507 NM_001024137 ENSMUSG00000070719 Pla2g4d 2610311B01Rik|Pla2delta|cPLA2delta - 2|2 E5 phospholipase A2, group IVD protein-coding 66603 Mm.35353 NM_025656 ENSMUSG00000060121 Gemin2 Sip1|gemin-2 - 12|12 C1 gem nuclear organelle associated protein 2 protein-coding 102636658 XR_378638 Gm33663 - - 7 F5|7 predicted gene, 33663 ncRNA 67675 Mm.439919 NM_026307 ENSMUSG00000024194 Cuta 0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454 - 17|17 A3.3 cutA divalent cation tolerance homolog protein-coding 14169 Mm.206362 NM_010201 ENSMUSG00000025551 Fgf14 FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B) - 14 E5|14 66.18 cM fibroblast growth factor 14 protein-coding 100042024 XR_874183 ENSMUSG00000094590 Gm3629 - - 14 A1|14 predicted gene 3629 unknown 100041260 Gm15042 EG666288 - X|X F1 predicted gene 15042 pseudo 110786 Iglc2 Igl-C2 - 16 A3|16 11.89 cM immunoglobulin lambda constant 2 other 105242661 XR_869096 Gm38814 - - 6 B3|6 predicted gene, 38814 ncRNA 100380944 Mm.392955 NR_045914 ENSMUSG00000084799 Ino80dos Gm11602 - 1 C2|1 INO80 complex subunit D, opposite strand ncRNA 102640752 Mm.328938 XR_001782226 Gm16758 - - 17 A3.3|17 15.59 cM predicted gene, 16758 ncRNA 102638179 XR_375182 Gm34805 - - 2 H2|2 predicted gene, 34805 ncRNA 85057 D1Mit81 - - 1 43.88 cM DNA segment, Chr 1, Massachusetts Institute of Technology 81 unknown 105242966 XR_882189 Gm16158 - - 7 C|7 37.54 cM predicted gene 16158 ncRNA 30956 Mm.18651 NM_013930 ENSMUSG00000029695 Aass LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH - 6 A3.1|6 10.27 cM aminoadipate-semialdehyde synthase protein-coding 217066 Mm.347543 NM_001025564 ENSMUSG00000057534 Elobl Gm15698|Tceb2l - 11|11 C elongin B-like protein-coding 433063 Gm5491 EG433063 - 17|17 A1 ribosomal protein L15 pseudogene pseudo 29865 Mm.103669 NM_013877 ENSMUSG00000005649 Cabp5 - - 7|7 A1 calcium binding protein 5 protein-coding 102637549 XR_392008 ENSMUSG00000099977 Gm29286 - - Y B|Y predicted gene 29286 ncRNA 93942 D16Jhu21 66B19.T7 - - DNA segment, Chr 16, Johns Hopkins University 21 unknown 68421 Mm.336563 NM_026719 ENSMUSG00000073725 Lmbrd1 0910001K20Rik|AV347960 - 1|1 A5 LMBR1 domain containing 1 protein-coding 100041683 Gm20882 - - Y|Y predicted gene, 20882 protein-coding 211798 Mm.235443 NM_172499 ENSMUSG00000041945 Mfsd9 4931419K03Rik - 1|1 B major facilitator superfamily domain containing 9 protein-coding 432613 Mm.308822 NM_001033775 ENSMUSG00000070332 Trim80 4933422H20Rik|Trim47l - 11|11 E2 tripartite motif-containing 80 protein-coding 13489 Mm.41970 NM_010077 ENSMUSG00000032259 Drd2 D2R|Drd-2 - 9 A5.3|9 26.72 cM dopamine receptor D2 protein-coding 100417181 Gm14824 - - X|X D crumbs homolog 1 pseudogene pseudo 100035672 Gwth7 - - 18 56.23 cM growth traits 7 unknown 100312520 Vmn1r-ps152 - - 18 A1|18 vomeronasal 1 receptor, pseudogene 152 pseudo 102639484 Gm35788 - - X|X predicted gene, 35788 ncRNA 94066 Mm.26775 NM_053163 ENSMUSG00000021607 Mrpl36 AI646041 - 13|13 C1 mitochondrial ribosomal protein L36 protein-coding 27922 D16Ium43 - - 16 30.6 cM DNA segment, Chr 16, Indiana University Medical 43 unknown 212390 Mm.409581 NM_001033531 ENSMUSG00000040387 Klhl32 6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900 - 4 A3|4 10.42 cM kelch-like 32 protein-coding 100038529 Mm.484832 Gm10765 - - - predicted gene 10765 unknown 65112 Mm.73682 NM_022995 ENSMUSG00000038400 Pmepa1 2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai - 2|2 H3 prostate transmembrane protein, androgen induced 1 protein-coding 235497 Mm.41508 NM_001006122 ENSMUSG00000042487 Leo1 Gm185 - 9|9 D Leo1, Paf1/RNA polymerase II complex component protein-coding 102640173 XR_865377 Gm28175 - - 1 B|1 predicted gene 28175 ncRNA 319868 9430027J11Rik - - 14|14 RIKEN cDNA 9430027J11 gene protein-coding 102635036 XR_376650 Gm38472 - - 4 D2.2|4 predicted gene, 38472 ncRNA 116922 D13Jde9 - - - DNA segment, Chr 13, Jan Deussing 9 unknown 71900 Mm.27742 NM_027992 ENSMUSG00000029571 Tmem106b 2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344 - 6|6 A1 transmembrane protein 106B protein-coding 238412 Ighv2-3 Gm16948 - 12|12 F1 immunoglobulin heavy variable 2-3 other 111901 Xltr1 - - - xenotropic long terminal repeat-containing proviral locus 1 other 76776 2410084L01Rik - - 1|1 H3 RIKEN cDNA 2410084L01 gene protein-coding 100417360 Gm18559 - - 7|7 B4 RAN, member RAS oncogene family pseudogene pseudo 22186 Mm.297372 NM_019883 ENSMUSG00000090137 Uba52 Cep52|D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc - 8 B3.3|8 34.15 cM ubiquitin A-52 residue ribosomal protein fusion product 1 protein-coding 62365 D14Mit252 - - 14 12.7 cM DNA Segment, Chr 14 Massachusetts Institute of Technology 252 unknown 68195 Mm.181237 NM_026611 ENSMUSG00000094724 Rnaset2b 0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2 - 17|17 A1 ribonuclease T2B protein-coding 56429 Mm.28935 NM_019759 ENSMUSG00000026574 Dpt 1810032B19Rik|5033416F05Rik|EQ-1|Eq1 - 1|1 H2.2 dermatopontin protein-coding 226565 Mm.270516 NM_001178038 ENSMUSG00000095576 Fmo6 - - 1|1 H2.1 flavin containing monooxygenase 6 protein-coding 269623 Mm.38014 NM_172991 ENSMUSG00000040302 Rbm48 AW548102|C030048B08Rik - 5|5 A1 RNA binding motif protein 48 protein-coding 117150 Mm.22682 NM_054097 ENSMUSG00000025417 Pip4k2c Pip5k2c - 10|10 D3 phosphatidylinositol-5-phosphate 4-kinase, type II, gamma protein-coding 102637959 XR_382711 Gm38504 - - 13 C3|13 predicted gene, 38504 ncRNA 68642 Mm.31236 NM_026798 ENSMUSG00000024667 Tmem216 1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550 - 19|19 A transmembrane protein 216 protein-coding 67343 Mm.87057 NM_026099 ENSMUSG00000032900 Tex43 1700065I17Rik|Tseg7 - 18|18 D3 testis expressed 43 protein-coding 74272 Mm.484040 NM_023748 1700054O19Rik - - 14|14 A3 RIKEN cDNA 1700054O19 gene unknown 230654 Mm.3655 NM_153521 ENSMUSG00000028703 Lrrc41 AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1 - 4|4 D1 leucine rich repeat containing 41 protein-coding 11691 alp - - - alopecia, recessive unknown 66943 Mm.29247 NM_025861 ENSMUSG00000034006 Pqlc1 2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974 - 18|18 E3 PQ loop repeat containing 1 protein-coding 56690 Mm.423037 NM_019966 ENSMUSG00000074064 Mlycd AI324784|Mcd - 8|8 E1 malonyl-CoA decarboxylase protein-coding 433004 Mm.310200 NM_001002790 B830017H08Rik - - 16|16 A3 RIKEN cDNA B830017H08 gene ncRNA 102637513 Gm34303 - - 3 C|3 predicted gene, 34303 pseudo 217700 Mm.49245 NM_172580 ENSMUSG00000043487 Acot6 4632408A20Rik|A330054B07|BE688602 - 12|12 D1 acyl-CoA thioesterase 6 protein-coding 675062 Gm15002 - - X|X F1 predicted gene 15002 pseudo 108167855 XM_017314871 Gm46255 - - 11 A1|11 predicted gene, 46255 protein-coding 668015 Gm8925 EG668015 - 5|5 A1 predicted gene 8925 pseudo 100418335 Gm15937 - - 15|15 A1 heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene pseudo 102636983 XR_382923 Gm33905 - - 13 D2.2|13 predicted gene, 33905 ncRNA 105243146 XR_870260 Gm39146 - - 8 A2|8 predicted gene, 39146 ncRNA 215257 Mm.249379 NM_153511 ENSMUSG00000044103 Il1f9 Il36g - 2 A3|2 16.24 cM interleukin 1 family, member 9 protein-coding 100503901 Mm.135543 XR_869906 Gm19950 - - 7 F2|7 64.02 cM predicted gene, 19950 ncRNA 102634967 XR_387209 Gm16341 - - 1 C5|1 43.94 cM predicted gene 16341 ncRNA 105242846 Gm38943 - - 7|7 predicted gene, 38943 ncRNA 100862050 Gm21432 - - X A3.1|X predicted gene, 21432 pseudo 11990 Mm.119936 NM_009730 ENSMUSG00000027312 Atrn AW558010|Mgca|mg - 2 F1|2 63.26 cM attractin protein-coding 228410 Mm.259876 NM_145529 ENSMUSG00000027176 Cstf3 4732468G05Rik|C79532|CstF-77 - 2 E2|2 54.84 cM cleavage stimulation factor, 3' pre-RNA, subunit 3 protein-coding 102466793 NR_106010 ENSMUSG00000098334 Mir7043 Gm27776|mmu-mir-7043 - 6|6 E3 microRNA 7043 ncRNA 108352 Mtv5 Mtv-5 - - mammary tumor virus locus 5 other 73285 Mm.417846 1700037F24Rik - - 1|1 RIKEN cDNA 1700037F24 gene protein-coding 27709 D1Dau29 - - - DNA segment, Chr 1, DA Underhill 29 unknown 330485 Mm.260740 NM_183311 ENSMUSG00000043843 Tmem145 B930076A02Rik - 7|7 A3 transmembrane protein 145 protein-coding 170638 Mm.270641 NM_174998 ENSMUSG00000046093 Hpcal4 AI846570|NVP-2 - 4|4 D2.2 hippocalcin-like 4 protein-coding 102637441 Gm34248 - - 5|5 predicted gene, 34248 pseudo 235612 Mm.133921 NM_177703 ENSMUSG00000074061 Fbxw19 E330023O18 - 9|9 F2 F-box and WD-40 domain protein 19 protein-coding 105243915 XR_865397 Gm28782 - - 1 B|1 predicted gene 28782 ncRNA 224938 Mm.489681 NM_144859 ENSMUSG00000024083 Pja2 AI447901|AL022700|Neurodap1|mKIAA0438 - 17|17 E1.1 praja ring finger ubiquitin ligase 2 protein-coding 62289 D19Mit58 - - 19 44.88 cM DNA segment, Chr 19, Massachusetts Institute of Technology 58 unknown 105245602 XR_873845 Gm41033 - - 13 D1|13 predicted gene, 41033 ncRNA 100043589 Gm10586 - - 7 F3|7 predicted gene 10586 protein-coding 105243560 XR_871325 Gm39449 - - 9 F3|9 predicted gene, 39449 ncRNA 68187 Mm.87130 NM_026604 ENSMUSG00000026153 Fam135a 4921533L14Rik|AI256732|AI835491 - 1|1 A5 family with sequence similarity 135, member A protein-coding 12764 Mm.3820 NM_009908 ENSMUSG00000030282 Cmas AW208911|CMPNeu5Ac|D6Bwg0250e - 6 G2|6 74.66 cM cytidine monophospho-N-acetylneuraminic acid synthetase protein-coding 245867 Mm.491085 NM_153594 ENSMUSG00000027589 Pcmtd2 5330414D10Rik|AI314201 - 2|2 H4 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 protein-coding 71508 Mm.442497 NM_178875 ENSMUSG00000113450 Zfp935 8430426H19Rik|Es113 - 13|13 B3 zinc finger protein 935 protein-coding 105246905 Gm42103 - - 5|5 predicted gene, 42103 ncRNA 258315 Mm.377432 NM_146318 ENSMUSG00000059762 Olfr767 MOR115-1|MOR115-4 - 10|10 D3 olfactory receptor 767 protein-coding 60999 D2Mit74 - - 2 103.43 cM DNA segment, Chr 2, Massachusetts Institute of Technology 74 unknown 232947 Mm.219662 NM_199149 ENSMUSG00000051403 Ppp1r37 Gm158|Lrrc68 - 7|7 A3 protein phosphatase 1, regulatory subunit 37 protein-coding 102639219 XR_375069 Gm35579 - - 2 G3|2 predicted gene, 35579 ncRNA 15369 Mm.272866 NM_010443 ENSMUSG00000004070 Hmox2 HO-2|HO2 - 16 A1|16 2.46 cM heme oxygenase 2 protein-coding 26398 Mm.412922 NM_009157 ENSMUSG00000033352 Map2k4 JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1 - 11 B3|11 40.53 cM mitogen-activated protein kinase kinase 4 protein-coding 260301 Mm.219545 NM_153114 ENSMUSG00000044055 Otos OTOSP - 1|1 D otospiralin protein-coding 100124587 Vmn2r-ps147 - - Y|Y A1 vomeronasal 2, receptor, pseudogene 147 pseudo 100039363 Gm2183 - - 5|5 B1 ribosomal protein L40 pseudogene pseudo 100416795 Gm18257 - - 7|7 D1 SCAN domain containing 3 pseudogene pseudo 102637950 Gm34635 - - 11|11 predicted gene, 34635 ncRNA 22066 Mm.10100 NM_016984 ENSMUSG00000027748 Trpc4 CCE1|STRPC4|Trp4|Trrp4 - 3 C|3 25.43 cM transient receptor potential cation channel, subfamily C, member 4 protein-coding 667651 Gm8745 EG667651 - 7|7 A3 coiled-coil domain containing 15 pseudogene pseudo 11806 Mm.26743 NM_009692 ENSMUSG00000032083 Apoa1 Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I - 9 A5.2|9 25.36 cM apolipoprotein A-I protein-coding 102465989 NR_106124 ENSMUSG00000099320 Mir7664 Gm28015|mmu-mir-7664 - 2|2 A3 microRNA 7664 ncRNA 320679 Mm.442455 NM_177225 ENSMUSG00000058656 Samd12 A830094I09Rik - 15|15 C-D1 sterile alpha motif domain containing 12 protein-coding 667585 Gm8715 EG667585 - 5|5 A1 predicted gene 8715 pseudo 100036088 Adip13 - - 5 26.89 cM adiposity 13 unknown 19867 Rnu7-ps1 - - 12|12 F2 U7 small nuclear RNA, pseudogene 1 pseudo 320593 Mm.125338 NR_155493 A230051N06Rik - - 17|17 D RIKEN cDNA A230051N06 gene ncRNA 547160 Mm.350551 NM_001025260 ENSMUSG00000095413 H2al1e Gm14484 - X A1.1|X H2A histone family member L1E protein-coding 69329 Mm.389548 NM_027041 ENSMUSG00000028294 Cfap206 1700003M02Rik|AU024269 - 4|4 A5 cilia and flagella associated protein 206 protein-coding 668797 Gm13937 - - 2|2 E3 lactate dehydrogenase A pseudogene pseudo 14150 fe - - - faded unknown 667212 Gm11848 - - 4|4 A2 protein phosphatase 1, catalytic subunit, gamma isoform pseudogene pseudo 108168126 n-TSaga1 Trnas-aga|n-Ts10 - 13 A3.1|13 nuclear encoded tRNA serine 1 (anticodon AGA) tRNA 619596 Gm6085 EG619596 - 1|1 A1 glioma tumor suppressor candidate region gene 2 pseudogene pseudo 66193 Mm.29131 NM_025411 ENSMUSG00000028669 Pithd1 1110049F12Rik|AA408179|Trp26 - 4|4 D3 PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1 protein-coding 68146 Mm.96833 NM_026577 ENSMUSG00000022911 Arl13b A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn - 16|16 C1.3 ADP-ribosylation factor-like 13B protein-coding 15061 Mm.219544 NM_031367 ENSMUSG00000039146 Ifi44l H-28|H28|H28-1|NS1178 - 3 H3|3 76.94 cM interferon-induced protein 44 like protein-coding 407802 Mm.453091 BC028789 - - - cDNA sequence BC028789 protein-coding 12558 Mm.257437 NM_007664 ENSMUSG00000024304 Cdh2 CDHN|N-CAD|Ncad - 18 A1|18 10.1 cM cadherin 2 protein-coding 105246480 XR_877524 Gm41765 - - 18 E2|18 predicted gene, 41765 ncRNA 240853 Gm4953 EG240853 - 1|1 H1 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d pseudogene pseudo 105245900 XR_875092 Gm41280 - - 15 B1|15 predicted gene, 41280 ncRNA 27369 Mm.42234 NM_013764 ENSMUSG00000014554 Dguok dGK|dGK1|dGK2|dGK3 - 6 C3|6 35.94 cM deoxyguanosine kinase protein-coding 13430 Mm.433257 NM_007871 ENSMUSG00000033335 Dnm2 Dyn2|Udnm|b2b2159Clo - 9 A3|9 7.79 cM dynamin 2 protein-coding 102639276 Mm.421429 XR_879906 Gm26534 - - 11 B2|11 predicted gene, 26534 ncRNA 27751 D1Sta11 - - - DNA segment, Chr 1, Philip Stanier 11 unknown 104836 Mm.273270 NM_134048 ENSMUSG00000020659 Cbll1 AI467391|Hakai|c-Cbl-like - 12|12 A2 Casitas B-lineage lymphoma-like 1 protein-coding 751523 NR_030424 ENSMUSG00000099236 Mir668 Gm27556|Mirn668|mir-668|mmu-mir-668 - 12 F1|12 microRNA 668 ncRNA 102633214 Mm.399387 NR_136925 Gm12925 - - 4 D2.2|4 57.42 cM predicted gene 12925 ncRNA 545874 Mm.347595 NM_001104641 ENSMUSG00000094672 Vmn2r25 EG545874 - 6|6 F2 vomeronasal 2, receptor 25 protein-coding 102467603 n-TTagt5 n-Tt5 - 11 B3|11 nuclear encoded tRNA threonine 5 (anticodon AGT) tRNA 100093673 Trnan-guu - - - transfer RNA asparagine (anticodon GUU) tRNA 102638993 XR_378382 LOC102638993 - - 7 E2 uncharacterized LOC102638993 ncRNA 20763 Mm.196439 NM_011475 ENSMUSG00000042157 Sprr2i - - 3 F1|3 40.14 cM small proline-rich protein 2I protein-coding 102633472 XR_389713 LOC102633472 - - - uncharacterized LOC102633472 ncRNA 108511955 Btg2r9 - - 1 E4 Btg2R9 erythroid cis-regulatory module biological-region 258533 Mm.271445 NM_146540 ENSMUSG00000046016 Olfr1364 MOR256-13 - 13|13 A3.1 olfactory receptor 1364 protein-coding 208994 Mm.256929 NM_001045518 ENSMUSG00000032358 Fam83b C530008M07Rik|Gm516 - 9|9 D family with sequence similarity 83, member B protein-coding 102636988 Mm.417016 XR_389171 LOC102636988 - - 11 E2 uncharacterized LOC102636988 ncRNA 258960 Mm.377771 NM_146958 ENSMUSG00000060480 Olfr171 MOR273-1|MOR273-5 - 16|16 A3 olfactory receptor 171 protein-coding 100049712 NR_029644 ENSMUSG00000077903 Mir294 Mirn294|mir-294|mmu-miR-294 - 7 A1|7 microRNA 294 ncRNA 100125401 Femwf6 - - - femur work to failure 6 unknown 108168642 XM_017318851 ENSMUSG00000093927 LOC108168642 - - Y A1 Y-linked testis-specific protein 1-like protein-coding 105246948 XR_880505 Gm42141 Gm43819 - 5 E5|5 predicted gene, 42141 ncRNA 27984 Mm.395598 NM_025994 ENSMUSG00000040659 Efhd2 2600015J22Rik|AA408606|D4Wsu27e - 4 E1|4 74.75 cM EF hand domain containing 2 protein-coding 98175 W91643 - - - expressed sequence W91643 unknown 108168082 XR_001780935 Gm46413 - - 13 A5|13 predicted gene, 46413 ncRNA 19592 Rb(6.13)9Tu Rb9Tu - - Robertsonian translocation, Chr 6 and 13, Tubingen 9 other 16250 In(15)18Rk-p In(15)18Rk|In18Rk - - inversion, Chr 15, Roderick 18, proximal other 59044 Mm.359004 NM_021540 ENSMUSG00000020376 Rnf130 2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP - 11|11 B1.3 ring finger protein 130 protein-coding 105244060 XR_865888 Gm39741 - - 1 H6|1 predicted gene, 39741 ncRNA 258170 Olfr590-ps1 MOR0-1P - 7|7 E3 olfactory receptor 590, pseudogene 1 pseudo 98574 AU022138 - - - expressed sequence AU022138 unknown 100035282 Hdlq43 - - - HDL QTL 43 unknown 53886 Mm.44963 NM_016912 ENSMUSG00000029403 Cdkl2 5330436L21Rik|AI505225|KKIAMRE|Kkm - 5|5 E2 cyclin-dependent kinase-like 2 (CDC2-related kinase) protein-coding 78014 Mm.427734 4930488B04Rik - - - RIKEN cDNA 4930488B04 gene protein-coding 231637 Mm.389682 NM_198109 ENSMUSG00000042121 Ssh1 AW551225|Gm1394|Gm1395|SSH-1|SSH-1L - 5|5 F slingshot protein phosphatase 1 protein-coding 217124 Mm.229087 NM_172261 ENSMUSG00000038976 Ppp1r9b SPL|Spn - 11|11 D protein phosphatase 1, regulatory subunit 9B protein-coding 100035439 Eac6 - - - ethyl alcohol consumption QTL 6 unknown 105244554 XR_867627 Gm40147 - - 3 G2|3 predicted gene, 40147 ncRNA 637957 Gm7226 - - 7 F2|7 predicted gene 7226 protein-coding 102636487 Gm33541 - - 2|2 predicted gene, 33541 ncRNA 237553 Mm.445550 NM_146241 ENSMUSG00000050663 Trhde 9330155P21Rik - 10|10 D2 TRH-degrading enzyme protein-coding 319929 Mm.30453 NM_001256174 ENSMUSG00000094613 A630076J17Rik - - 3|3 F2.3 RIKEN cDNA A630076J17 gene protein-coding 61316 D3Mit159 - - 3 55.85 cM DNA segment, Chr 3, Massachusetts Institute of Technology 159 unknown 102634783 Mm.209121 XR_390664 ENSMUSG00000084937 Gm11228 - - 4 C2|4 35.92 cM predicted gene 11228 ncRNA 218294 Mm.25335 NM_172587 ENSMUSG00000033102 Cdc14b 2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1 - 13|13 B3 CDC14 cell division cycle 14B protein-coding 67269 Mm.153008 NM_023328 ENSMUSG00000021557 Agtpbp1 1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd - 13 B2|13 31.87 cM ATP/GTP binding protein 1 protein-coding 231836 Gm4869 EG231836 - 5|5 G2 predicted gene 4869 protein-coding 62531 D11Mit156 - - 11 39.47 cM DNA segment, Chr 11, Massachusetts Institute of Technology 156 unknown 22057 Mm.259673 NM_009427 ENSMUSG00000037573 Tob1 Tob|Trob - 11|11 D transducer of ErbB-2.1 protein-coding 108167898 XR_001780205 Gm46280 - - 11 B1.3|11 predicted gene, 46280 ncRNA 780863 Ighv1-8 - - 12|12 F2 immunoglobulin heavy variable V1-8 pseudo 105242696 XR_869195 Gm38843 Gm44884 - 6 C3|6 predicted gene, 38843 ncRNA 100822 Mm.288728 AU021755 - - - expressed sequence AU021755 unknown 102633400 XR_001782153 Gm20506 - - 17 B1|17 17.98 cM predicted gene 20506 ncRNA 13132 Mm.240830 NM_023118 ENSMUSG00000022150 Dab2 5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96 - 15 A1|15 2.15 cM disabled 2, mitogen-responsive phosphoprotein protein-coding 74500 5430439C14Rik - - 6|6 RIKEN cDNA 5430439C14 gene protein-coding 102636904 XR_382922 Gm33849 - - 13 D2.2|13 predicted gene, 33849 ncRNA 209550 Mm.341257 NM_001111118 ENSMUSG00000086022 Rad51ap2 EG209550 - 12|12 A1.1 RAD51 associated protein 2 protein-coding 14417 Mm.4784 NM_008078 ENSMUSG00000026787 Gad2 6330404F12Rik|GAD(65)|GAD65|Gad-2 - 2 A3|2 15.15 cM glutamic acid decarboxylase 2 protein-coding 102636089 XR_385666 Gm33258 - - 17 D|17 predicted gene, 33258 ncRNA 102639763 XR_384331 Gm35997 - - 15 E3|15 predicted gene, 35997 ncRNA 214063 Mm.39102 NM_172338 ENSMUSG00000040697 Dnajc16 2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962 - 4|4 E1 DnaJ heat shock protein family (Hsp40) member C16 protein-coding 100040158 Gm2635 - - 1 C5|1 predicted pseudogene 2635 protein-coding 622592 Gm14398 - - 2|2 H4 predicted gene 14398 pseudo 100503382 Gm14530 - - X|X 15.18 cM predicted gene 14530 pseudo 102638370 XR_380876 Gm34952 - - 10 D2|10 predicted gene, 34952 ncRNA 26430 Mm.15962 NM_011960 ENSMUSG00000021911 Parg AI413217 - 14|14 B poly (ADP-ribose) glycohydrolase protein-coding 404380 Olfr363-ps Olfr363|Olfr363-ps1 - 2|2 B olfactory receptor 363, pseudogene pseudo 102641805 Mm.483838 LOC102641805 - - - uncharacterized LOC102641805 ncRNA 73930 4930408K12Rik - - 3|3 H3 RIKEN cDNA 4930408K12 gene protein-coding 102467425 n-TCgca30 n-Tc30 - 6 B2.3|6 nuclear encoded tRNA cysteine 30 (anticodon GCA) tRNA 102640917 Gm29493 - - Y|Y predicted gene 29493 protein-coding 208869 Mm.150259 NM_153413 ENSMUSG00000039716 Dock3 MOCA|PBP|mKIAA0299 - 9|9 F1 dedicator of cyto-kinesis 3 protein-coding 258786 Mm.377690 NM_146790 ENSMUSG00000111517 Olfr1238 MOR231-11 - 2|2 E1 olfactory receptor 1238 protein-coding 100534297 Gm21019 - - 5|5 B1 kinesin family member 2C pseudogene pseudo 102638074 XR_383948 Gm34724 - - 15 B3.1|15 predicted gene, 34724 ncRNA 668234 Gm14803 - - X|X C3 predicted gene 14803 pseudo 75985 Mm.323004 NM_029494 ENSMUSG00000030643 Rab30 5033421K01Rik|AI323892|Rsb30 - 7|7 E1 RAB30, member RAS oncogene family protein-coding 23857 Mm.22480 NM_011806 ENSMUSG00000042508 Dmtf1 Dimp|Dmp1 - 5|5 A1 cyclin D binding myb-like transcription factor 1 protein-coding 12365 Mm.20940 NM_009809 ENSMUSG00000005355 Casp14 MICE|mini-ICE - 10|10 C1 caspase 14 protein-coding 100417014 Gm18362 - - 13|13 A2 ADP-ribosylation factor 3 pseudogene pseudo 102635718 Gm28211 - - Y|Y predicted gene 28211 protein-coding 62058 D10Mit12 - - 10 51.15 cM DNA segment, Chr 10, Massachusetts Institute of Technology 12 unknown 105246930 XR_880466 ENSMUSG00000090006 Gm16227 - - 5 E4|5 48.46 cM predicted gene 16227 ncRNA 17685 Mm.4619 NM_008628 ENSMUSG00000024151 Msh2 AI788990 - 17 E4|17 57.87 cM mutS homolog 2 protein-coding 27604 D0Dcr3 - - - DNA segment, Derry C. Roopenian 3 unknown 27891 D16Ium74 - - - DNA segment, Chr 16, Indiana University Medical 74 unknown 11569 Mm.86453 NM_009637 ENSMUSG00000030232 Aebp2 AU023766|B230313N05Rik - 6|6 G2 AE binding protein 2 protein-coding 102640811 Mm.440938 NR_155298 Gm11520 - - 11|11 D predicted gene 11520 ncRNA 208583 Mm.347509 NM_172461 ENSMUSG00000035032 Nek11 4932416N14Rik - 9|9 F1 NIMA (never in mitosis gene a)-related expressed kinase 11 protein-coding 66508 Mm.30003 NM_025605 ENSMUSG00000030842 Lamtor1 2400001E08Rik|Pdro|p18 - 7|7 E2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 protein-coding 665233 Gm7545 EG665233 - 6|6 D1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100124694 Trbv28 - - 6|6 B1 T cell receptor beta variable 28 pseudo 257974 Mm.469867 NM_001177857 ENSMUSG00000075192 Olfr1053 MOR187-4|Olfr1053-ps1 - 2|2 D olfactory receptor 1053 protein-coding 667026 Gm13534 - - 2|2 C1.1 nudix (nucleoside diphosphate linked moiety X)-type motif 15 pseudogene pseudo 105242452 LOC105242452 - - - protein CDV3 homolog pseudo 105245483 XR_873343 Gm40931 - - 13 A5|13 predicted gene, 40931 ncRNA 109458 Estq2 Est2 - 5 17.33 cM estradiol regulated response QTL 2 unknown 216859 Mm.288671 NM_153788 ENSMUSG00000001588 Acap1 Centb1 - 11|11 B3 ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 protein-coding 22634 Mm.287857 NM_009538 ENSMUSG00000019817 Plagl1 Lot1|Zac1 - 10 A2|10 4.72 cM pleiomorphic adenoma gene-like 1 protein-coding 383991 Gm12920 - - 4 A1|4 eukaryotic translation initiation factor 4A1 pseudogene pseudo 62918 D10Mit249 - - 10 11.45 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 249 unknown 11907 Mm.216321 NM_013799 ENSMUSG00000030850 Ate1 AI225793|AW547406 - 7|7 F3 arginyltransferase 1 protein-coding 13139 Mm.291235 NM_016811 ENSMUSG00000025357 Dgka 80kDa|AW146112|Dagk1 - 10 D3|10 77.14 cM diacylglycerol kinase, alpha protein-coding 277432 Mm.441156 NM_198627 ENSMUSG00000037843 Vstm2l Gm691 - 2|2 H1 V-set and transmembrane domain containing 2-like protein-coding 117071 T2dm3 - - - type 2 diabetes mellitus 3 unknown 102637137 Gm34024 - - 13|13 predicted gene, 34024 ncRNA 258323 Mm.223019 NM_146326 ENSMUSG00000094970 Olfr943 MOR171-44 - 9|9 A5.1 olfactory receptor 943 protein-coding 436042 Gm5740 EG436042 - 8|8 B2 3-phosphoglycerate dehydrogenase pseudogene pseudo 100417878 Gm18875 - - 1|1 E2.3 secreted acidic cysteine rich glycoprotein pseudogene pseudo 100035558 Fbgl2 Fbg-2 - 15 5.35 cM fasting blood glucose 2 unknown 387588 Mm.298030 Ssxb11 - - XA1.1|X synovial sarcoma, X member B11 protein-coding 102635692 Gm32964 - - 5|5 predicted gene, 32964 ncRNA 105246861 Gm12126 - - 11|11 21.96 cM predicted gene 12126 ncRNA 107572 Mchm2 Mcm-2|Mcm2 - - modifier of chinchilla-mottled 2 protein-coding 62831 D13Mit226 - - 13 55.87 cM DNA segment, Chr 13, Massachusetts Institute of Technology 226 unknown 100101934 Trav15d-3 - - 14|14 C2 T cell receptor alpha variable 15D-3 pseudo 102635197 XR_876107 Gm32597 - - 16 B5|16 predicted gene, 32597 ncRNA 108168262 XR_001781758 Gm46535 - - 15 F1|15 predicted gene, 46535 ncRNA 102634859 Gm32343 - - 19|19 predicted gene, 32343 ncRNA 243535 Mm.233854 NM_177738 ENSMUSG00000049694 BC048671 - - 6|6 D1 cDNA sequence BC048671 protein-coding 111449 Mtv37 Mtv-37 - - mammary tumor virus locus 37 other 100417623 Gm18721 - - 2|2 A1 casein kinase 2, alpha 1 polypeptide pseudogene pseudo 111852 Iapls2-27 - - - intracisternal A particle, lymphocyte specific 2-27 other 16210 Mm.8154 NM_008378 ENSMUSG00000024423 Impact E430016J11Rik - 18|18 A1 impact, RWD domain protein protein-coding 100040635 Mm.336240 NM_001099321 ENSMUSG00000079432 Gm15023 - - X|X F1 predicted gene 15023 protein-coding 436583 Mm.482118 NR_002905 ENSMUSG00000065649 Snora74a EG436583|RNU19|U19 - 18 B2|18 small nucleolar RNA, H/ACA box 74A snoRNA 19209 ptd - - - palate-tail-digits abnormality unknown 319158 Mm.14775 NM_175656 ENSMUSG00000060639 Hist1h4i - - 13|13 A3.1 histone cluster 1, H4i protein-coding 53902 Mm.331970 NM_022980 ENSMUSG00000059713 Rcan3 AU041093|Csp3|Dscr1l2 - 4 D3|4 67.59 cM regulator of calcineurin 3 protein-coding 100035947 Mchq1 - - 10 57.74 cM mean corpuscular hemoglobin QTL 1 unknown 60525 Mm.255026 NM_019811 ENSMUSG00000027605 Acss2 1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1 - 2|2 H1 acyl-CoA synthetase short-chain family member 2 protein-coding 60863 D6Mit53 - - 6 46.94 cM DNA segment, Chr 6, Massachusetts Institute of Technology 53 unknown 105247151 XR_881376 Gm42303 Gm45260 - 4 C3|4 predicted gene, 42303 ncRNA 74166 Mm.212927 NM_144534 ENSMUSG00000031791 Tmem38a 1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a - 8|8 B3.3 transmembrane protein 38A protein-coding 105246934 XR_880477 Gm42128 - - 5 E4|5 predicted gene, 42128 ncRNA 78338 2900037P16Rik - - 16|16 RIKEN cDNA 2900037P16 gene protein-coding 78214 4930589O11Rik - - 5|5 C3.1 RIKEN cDNA 4930589O11 gene protein-coding 112258 C10bw2 - - 9 20.76 cM castaneus 10 week body weight 2 unknown 93860 D11Jor1 - - - DNA segment, Chr 11, Barbara Jordan 1 unknown 194309 Mm.44356 NM_177574 ENSMUSG00000043614 Vps37d Wbscr24 - 5|5 G2 vacuolar protein sorting 37D protein-coding 104692 Mm.414035 NR_130637 ENSMUSG00000086386 Gm12108 BB052462 - 11|11 A4 predicted gene 12108 ncRNA 67395 Mm.50369 NM_026128 ENSMUSG00000045217 Ppp1r2-ps9 4930403L05Rik - X|X A1.1 protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9 pseudo 320362 9530085L11Rik - - 8|8 RIKEN cDNA 9530085L11 gene protein-coding 102640951 Mm.389614 XR_376852 ENSMUSG00000085234 Gm15614 - - 5 B1|5 17.33 cM predicted gene 15614 ncRNA 73553 Mm.243777 NM_028570 ENSMUSG00000090462 1700091H14Rik 100041930|Gm3578 - 14|14 B RIKEN cDNA 1700091H14 gene ncRNA 100041554 Mm.460715 NM_001243109 ENSMUSG00000079091 Gm3404 - - 5 G3|5 predicted gene 3404 protein-coding 108168353 XR_001782234 LOC108168353 - - 17 E4 uncharacterized LOC108168353 ncRNA 449521 Mm.268582 NM_001033496 ENSMUSG00000071256 Zfp213 BC038178|D17Ertd197e - 17 A3.3|17 11.67 cM zinc finger protein 213 protein-coding 53760 D13Mit31 D0Mit2 - 13 64.12 cM DNA segment, Chr 13, Massachusetts Institute of Technology 31 unknown 97929 C85539 - - - expressed sequence C85539 unknown 14995 H2-M7-ps H-2M7|H2-M7 - - histocompatibility 2, M region locus 7, pseudogene pseudo 229317 Mm.21617 NM_001005509 ENSMUSG00000027810 Eif2a D030048D22|D3Ertd194e - 3 D|3 28.58 cM eukaryotic translation initiation factor 2A protein-coding 70138 Mm.417834 NR_028285 ENSMUSG00000086494 2210417A02Rik AV081004 - 5|5 G3 RIKEN cDNA 2210417A02 gene ncRNA 100035219 Mfeq1 Mfe5q2 - - M16 feed efficiency QTL 1 unknown 102466213 NR_105956 ENSMUSG00000098413 Mir6990 Gm27726|mmu-mir-6990 - 19|19 A microRNA 6990 ncRNA 625653 Gm6610 EG625653 - 15|15 D3 predicted gene 6610 pseudo 100035807 Tgct2 - - - testicular germ cell tumor 2 unknown 101351 Mm.116802 NM_175313 ENSMUSG00000035245 Eogt A130022J15Rik|AI447490|AW214473|AW259391|Aer61 - 6|6 D3 EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding 791393 Mm.334011 A230065N10Rik - - - RIKEN cDNA A230065N10 gene unknown 104161 Lyb6 Lyb-6 - - B-lymphocyte antigen 6 protein-coding 66729 Mm.439817 NM_025732 ENSMUSG00000029607 Ankrd61 4921520G13Rik - 5|5 G2 ankyrin repeat domain 61 protein-coding 215351 Mm.28232 NM_146003 ENSMUSG00000034252 Senp6 2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797 - 9|9 E1 SUMO/sentrin specific peptidase 6 protein-coding 66154 Mm.30005 NM_025387 ENSMUSG00000021361 Tmem14c 1110021D01Rik|AU020193|HSPC194 - 13|13 A3.3 transmembrane protein 14C protein-coding 67959 Mm.29965 NM_028364 ENSMUSG00000002524 Puf60 2410104I19Rik|2810454F19Rik|SIAHBP1 - 15|15 D3 poly-U binding splicing factor 60 protein-coding 668002 Gm8921 EG668002 - 6|6 G1 gem (nuclear organelle) associated protein 8 pseudogene pseudo 258363 Mm.223054 NM_146366 ENSMUSG00000047969 Olfr1093 MOR179-6 - 2|2 D olfactory receptor 1093 protein-coding 52810 D9Bwg1411e - - 9 23.56 cM DNA segment, Chr 9, Brigham & Women's Genetics 1411 expressed unknown 17708 COX1 CoxI - - cytochrome c oxidase subunit I protein-coding 102637074 Mm.417657 XR_001783317 Gm13561 - - 2 C1.3|2 35.85 cM predicted gene 13561 ncRNA 78833 Mm.35546 NM_030198 ENSMUSG00000031669 Gins3 2700085M18Rik|AI616142 - 8|8 C5-D1 GINS complex subunit 3 (Psf3 homolog) protein-coding 229542 Mm.270999 NM_139304 ENSMUSG00000042390 Gatad2b AL118180|C430014D17Rik|P66beta|mKIAA1150 - 3|3 F1 GATA zinc finger domain containing 2B protein-coding 104299 Prt1 Prt-1 - - pancreatic proteinase 1 protein-coding 97142 C77905 - - - expressed sequence C77905 unknown 16739 L1Md-Tf8 - - - L1 repeat, Tf subfamily, member 8 other 108168995 XR_001784528 Gm46883 - - 4 B1|4 predicted gene, 46883 ncRNA 380845 Mm.379403 NM_001033770 ENSMUSG00000096641 Gm904 - - 13|13 A5 predicted gene 904 protein-coding 20441 Mm.251002 NM_009176 ENSMUSG00000028538 St3gal3 ST3GalIII|ST3N|Siat3|Siat6 - 4|4 D2.1 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 protein-coding 52448 D14Rp4e D14Rp4|RP4 - - DNA segment, Chr 14, Roswell Park-4, expressed unknown 545474 Mm.214317 NM_001160410 ENSMUSG00000060257 Scrt2 AW060659 - 2|2 G3 scratch family zinc finger 2 protein-coding 100040418 Gm20841 - - Y|Y predicted gene, 20841 protein-coding 100384880 Gm17827 - - 8 E2|8 72.32 cM ribosomal protein L7A pseudogene pseudo 108553 Iapls1-26 - - - intracisternal A particle, lymphocyte specific 1-26 other 665543 Gm7678 EG665543 - 10|10 A3 aldo-keto reductase family 1, member B3 pseudogene pseudo 108168522 Gm46710 - - Y C3|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 240819 Mm.453236 NM_178244 ENSMUSG00000047053 Teddm1a Epdd1|Teddm1|e9-1 - 1|1 G3 transmembrane epididymal protein 1A protein-coding 622146 Gm6290 EG622146 - 7|7 B5 predicted gene 6290 pseudo 83491 Mm.190607 NM_031377 ENSMUSG00000041805 Pramel1 - - 4|4 E1 preferentially expressed antigen in melanoma-like 1 protein-coding 102639442 XR_375611 Gm35756 - - 3 C|3 predicted gene, 35756 ncRNA 268417 Mm.239793 NM_172941 ENSMUSG00000020472 Zkscan17 Nizp1|Zfp496|Znf496 - 11|11 B1.3 zinc finger with KRAB and SCAN domains 17 protein-coding 100416714 Gm18211 - - 8|8 predicted gene, 18211 pseudo 11489 Mm.439714 NM_007400 ENSMUSG00000054555 Adam12 Mltna - 7|7 F3 a disintegrin and metallopeptidase domain 12 (meltrin alpha) protein-coding 109280136 LOC109280136 Mm1310 - - VISTA enhancer mm1310 biological-region 105243289 LOC105243289 - - 8 E1 ubiquitin-40S ribosomal protein S27a pseudogene pseudo 75746 Mm.23269 NM_029413 ENSMUSG00000031434 Morc4 1600017G11Rik|5630401M14Rik|AA117449|Zcwcc2 - X|X F1 microrchidia 4 protein-coding 109279944 LOC109279944 Mm397 - - VISTA enhancer mm397 biological-region 29825 Del(X)18Brd - - - deletion, Chr X, Bradley 18 other 665290 XM_977084 ENSMUSG00000094337 LOC665290 - - 5|5 PRAME family member 8 protein-coding 627244 Gm12003 - - 11|11 A1 actin, gamma, cytoplasmic 1 pseudogene pseudo 402755 6030487A22Rik - - X|X RIKEN cDNA 6030487A22 gene protein-coding 61874 D1Mit334 - - - DNA segment, Chr 1, Massachusetts Institute of Technology 334 unknown 98110 C77591 - - - expressed sequence C77591 protein-coding 100039087 Mm.458830 NM_001270792 ENSMUSG00000096276 Gm2042 - - 12|12 D2 predicted gene 2042 protein-coding 108169062 LOC108169062 - - 5 F golgin subfamily A member 7 pseudogene pseudo 62344 D19Mit81 - - 19 29.12 cM DNA segment, Chr 19, Massachusetts Institute of Technology 81 unknown 76993 Mm.59224 NR_131065 ENSMUSG00000086366 1700061J23Rik - - 11|11 A3.2 RIKEN cDNA 1700061J23 gene ncRNA 269529 Mm.389552 NM_001024142 ENSMUSG00000048232 Fbxo10 FBX10|Gm634 - 4|4 B1 F-box protein 10 protein-coding 620678 XR_141051 ENSMUSG00000080776 Gm12174 - - 11|11 B1.1 predicted gene 12174 pseudo 21149 T(2;8)26H T(5;18)26H|T26H - - reciprocal translocation, Chr 2 and 8, Harwell 26 other 627975 XM_006540505 Gm6818 EG627975 - 7|7 B3 predicted gene 6818 protein-coding 100113394 Mm.435429 NR_152851 Astx5 Astx|Gm14948 - X E3|X amplified spermatogenic transcripts X encoded 5 ncRNA 75317 Mm.179378 NM_029249 ENSMUSG00000035365 Parpbp 4930547N16Rik|AI503644|PARI - 10 C1|10 PARP1 binding protein protein-coding 67839 Mm.266611 NM_153410 ENSMUSG00000026930 Gpsm1 1810037C22Rik|AW107933|Ags3 - 2|2 A3 G-protein signalling modulator 1 (AGS3-like, C. elegans) protein-coding 27599 D11Bhm107 - - 11 46.78 cM DNA segment, Chr 11, Boehm 107 unknown 22242 Mm.10826 NM_009470 ENSMUSG00000030963 Umod THP|Urehd1|urehr4 - 7 F2|7 63.88 cM uromodulin protein-coding 16917 Mm.39825 NM_010725 ENSMUSG00000038765 Lmx1b Icst|LMX1.1|LMX1.2 - 2 B|2 22.48 cM LIM homeobox transcription factor 1 beta protein-coding 114073 Axtofa2 - - - anxiety-open field activity 2 unknown 105247133 XR_881276 Gm42288 - - 4 B1|4 predicted gene, 42288 ncRNA 71983 Mm.135188 NM_028036 ENSMUSG00000006850 Tmco6 2410015B03Rik - 18|18 B2 transmembrane and coiled-coil domains 6 protein-coding 102634438 XR_374898 Gm32020 - - 2 E5|2 predicted gene, 32020 ncRNA 71412 Mm.85484 NM_027790 ENSMUSG00000022209 Dhrs2 5430405K24Rik|Hep27 - 14 C3|14 dehydrogenase/reductase member 2 protein-coding 102635429 Mm.214396 XR_380132 Gm20655 - - 10 A3|10 7.23 cM predicted gene 20655 ncRNA 105243650 XR_877999 Gm39489 - - X A1.1|X predicted gene, 39489 ncRNA 100039145 Gm2066 - - X A3.1|X predicted pseudogene 2066 protein-coding 100036161 Vacq7 - - 12 2.59 cM voluntary alcohol consumption QTL 7 unknown 100216536 NR_028569 ENSMUSG00000065640 Snord1c - - 11 E2|11 small nucleolar RNA, C/D box 1C snoRNA 62291 D19Mit63 - - 19 30.3 cM DNA segment, Chr 19, Massachusetts Institute of Technology 63 unknown 105246363 XR_877168 Gm41662 - - 18 A1|18 predicted gene, 41662 ncRNA 102639496 XR_879075 Gm35797 - - 8 C4|8 predicted gene, 35797 ncRNA 102640535 XR_391931 ENSMUSG00000101626 Gm29386 - - Y B|Y predicted gene 29386 ncRNA 70084 2300004M11Rik - - 1|1 RIKEN cDNA 2300004M11 gene protein-coding 114654 Mm.246697 NM_033478 ENSMUSG00000073413 Ly6g6d A930024F17Rik|G6d|G6f|MEGT1|NG25|NG32|g6f-ly6g6d - 17|17 B1 lymphocyte antigen 6 complex, locus G6D protein-coding 100503479 Gm19716 - - 14|14 C3 eukaryotic translation initiation factor 4B pseudogene pseudo 102639055 Gm35459 - - 11|11 predicted gene, 35459 protein-coding 269593 Mm.485824 NM_024452 ENSMUSG00000001089 Luzp1 2700072H04Rik|AI266952|Luzp|mFLJ00226 - 4 D3|4 68.8 cM leucine zipper protein 1 protein-coding 61591 D9Mit285 - - 9 21.42 cM DNA segment, Chr 9, Massachusetts Institute of Technology 285 unknown 666719 Gm12527 - - 4|4 B3 zinc finger, MYND domain containing 19 pseudogene pseudo 105242448 Gm38713 - - 14|14 predicted gene, 38713 protein-coding 111812 Iapls1-20 - - - intracisternal A particle, lymphocyte specific 1-20 other 100503199 Mm.392282 NR_034038 ENSMUSG00000097772 5430416N02Rik 100041797|Adapt33|Gm3514 - 5|5 E4 RIKEN cDNA 5430416N02 gene ncRNA 12526 Mm.333148 NM_009858 ENSMUSG00000053044 Cd8b1 Cd8b|Ly-3|Ly-C|Lyt-3 - 6 C1|6 32.14 cM CD8 antigen, beta chain 1 protein-coding 211383 Mm.330696 NM_213727 ENSMUSG00000045174 Amer3 9430069J07Rik|Fam123c - 1|1 B APC membrane recruitment 3 protein-coding 78459 Mm.179195 NM_001033184 ENSMUSG00000074139 1700057G04Rik - - 9|9 E3.3 RIKEN cDNA 1700057G04 gene protein-coding 574402 Mm.391108 NM_001025381 ENSMUSG00000052229 Gpr17 AI853548 - 18 B1|18 G protein-coupled receptor 17 protein-coding 100534307 Gm21023 - - 6|6 F2 vomeronasal 2, receptor 25 pseudogene pseudo 73828 Mm.38238 NM_030246 ENSMUSG00000021222 Dcaf4 1110018E21Rik|Wdr21 - 12|12 D1 DDB1 and CUL4 associated factor 4 protein-coding 14600 Mm.3986 NM_010284 ENSMUSG00000055737 Ghr GHBP|GHR/BP - 15 A1|15 1.84 cM growth hormone receptor protein-coding 102641202 Gm38541 - - 15 B3.3|15 predicted gene, 38541 pseudo 108169134 XR_001785200 Gm46954 - - 6 A3.1|6 predicted gene, 46954 ncRNA 399676 Mm.454051 NM_207273 ENSMUSG00000094163 Tdpoz5 - - 3|3 F2.1 TD and POZ domain containing 5 protein-coding 105243969 Gm39670 - - 11|11 predicted gene, 39670 ncRNA 68978 1500002I01Rik - - 19|19 RIKEN cDNA 1500002I01 gene protein-coding 21788 Mm.124316 NM_011576 ENSMUSG00000027082 Tfpi A630013F22Rik|AW552122|EPI|LACI - 2|2 D tissue factor pathway inhibitor protein-coding 68636 Mm.347964 NM_023480 ENSMUSG00000045316 Fahd1 1110025H10Rik|AV002085 - 17|17 A3.3 fumarylacetoacetate hydrolase domain containing 1 protein-coding 109079 Mm.34329 NM_175400 ENSMUSG00000026662 Sephs1 1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1 - 2|2 A1 selenophosphate synthetase 1 protein-coding 14562 Mm.299742 NM_008108 ENSMUSG00000030117 Gdf3 C78318|Gdf-3|Vgr-2|Vgr2|ecat9 - 6 F1|6 57.7 cM growth differentiation factor 3 protein-coding 102640609 XR_381610 Gm36634 - - 12 C1|12 predicted gene, 36634 ncRNA 100169870 Gm11054 - - - predicted gene 11054 unknown 108168819 LOC108168819 - - 2 H3 ATP synthase F(0) complex subunit C1, mitochondrial pseudogene pseudo 667443 Gm13612 - - 2|2 C2 predicted gene 13612 pseudo 102634393 XR_373653 Gm31985 - - 1 H2.1|1 predicted gene, 31985 ncRNA 105244620 XR_867905 Gm40203 - - 4 C5|4 predicted gene, 40203 ncRNA 100416590 Gm18161 - - 19|19 D3 ribosomal protein L17 pseudogene pseudo 102635092 XR_380530 Gm32515 - - 10 B5.1|10 predicted gene, 32515 ncRNA 670534 Vmn2r-ps124 - - 17|17 A3.2 vomeronasal 2, receptor, pseudogene 124 pseudo 214642 Mm.221404 NM_001081351 ENSMUSG00000062980 Cped1 6720481P07|A430107O13Rik|AI552584 - 6|6 A3.1 cadherin-like and PC-esterase domain containing 1 protein-coding 106628 Mm.37368 NM_134125 ENSMUSG00000019487 Trip10 AI646975|Cip4 - 17|17 D thyroid hormone receptor interactor 10 protein-coding 434869 Mm.347476 NM_001198987 ENSMUSG00000094378 Gm15097 Ott-like - X F3|X predicted gene 15097 protein-coding 236539 Mm.16898 NM_016966 ENSMUSG00000053398 Phgdh 3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA - 3|3 F2.2 3-phosphoglycerate dehydrogenase protein-coding 106137 D16Mgi22 AA682079 - - DNA Segment, Chr 16, Mouse Genome Informatics 22 unknown 53101 Y97m1a3 - - - DNA segment, Y97m1a3 unknown 102638093 XR_390591 Gm34738 - - 4 B3|4 predicted gene, 34738 ncRNA 54486 Mm.410688 NM_019455 ENSMUSG00000029919 Hpgds H-PGDS|Ptgds2 - 6|6 C1 hematopoietic prostaglandin D synthase protein-coding 257891 Mm.389935 NM_001011742 ENSMUSG00000043855 Olfr479 MOR267-15 - 7|7 E3 olfactory receptor 479 protein-coding 14778 Mm.200916 NM_008161 ENSMUSG00000018339 Gpx3 AA960521|EGPx|GPx|GSHPx-3|GSHPx-P - 11|11 B1.3 glutathione peroxidase 3 protein-coding 101055673 LOC101055673 - - 7 A1 leukocyte immunoglobulin-like receptor subfamily B member 3 pseudo 258564 Mm.223093 NM_146571 ENSMUSG00000033850 Olfr1015 MOR213-3 - 2|2 D olfactory receptor 1015 protein-coding 102635568 XR_374247 Gm32866 - - 2 B|2 predicted gene, 32866 ncRNA 213499 Mm.28865 NM_172518 ENSMUSG00000028920 Fbxo42 6720460I06Rik|mKIAA1332 - 4|4 D3 F-box protein 42 protein-coding 14977 Mm.18556 NM_008202 ENSMUSG00000024327 Slc39a7 AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7 - 17 B1|17 17.98 cM solute carrier family 39 (zinc transporter), member 7 protein-coding 102632423 Mm.261755 NR_110507 ENSMUSG00000107933 Gm30498 - - 6 F1|6 predicted gene, 30498 ncRNA 108595 Iapls3-46 - - - intracisternal A particle, lymphocyte specific, probe 3-46 other 52616 Mm.320737 D14Ertd426e - - - DNA segment, Chr 14, ERATO Doi 426, expressed protein-coding 665775 Mm.158726 NM_001081422 ENSMUSG00000061755 Bod1l A230054D04Rik|AI853319|FAM44A|mKIAA1327 - 5|5 B3 biorientation of chromosomes in cell division 1-like protein-coding 100462740 Gm19247 - - 9 C|9 35.82 cM ribosomal protein S27 pseudogene pseudo 672778 Gm9575 - - 16 B5|16 protease (prosome, macropain) 26S subunit, ATPase 1 pseudogene pseudo 62491 D10Mit133 - - 10 54.72 cM DNA segment, Chr 10, Massachusetts Institute of Technology 133 unknown 109489 Cplaq7 - - 2 62.89 cM circadian period of locomotor activity 7 unknown 73216 Mm.53877 XR_141098 ENSMUSG00000060808 B9d1os 3110043A19Rik - 11|11 B2 B9 protein domain 1, opposite strand unknown 105245594 Gm41026 - - 13|13 predicted gene, 41026 ncRNA 102467625 n-TVcac11 n-Tv19 - 13 A3.1|13 nuclear encoded tRNA valine 11 (anticodon CAC) tRNA 98965 Mm.440616 AI448005 - - - expressed sequence AI448005 protein-coding 72539 2700008E08Rik - - 14|14 RIKEN cDNA 2700008E08 gene protein-coding 216229 Gm4800 EG216229 - 10|10 C2 retinoblastoma binding protein 4 pseudogene pseudo 76927 Mm.273330 NM_029801 ENSMUSG00000010538 Tsacc 1700021C14Rik|SIP - 3|3 F1 TSSK6 activating co-chaperone protein-coding 56310 Mm.477738 NM_019726 ENSMUSG00000023170 Gps2 AI505953|GPS-2 - 11|11 B3 G protein pathway suppressor 2 protein-coding 668370 Gm9134 EG668370 - 12|12 F1 FUS interacting protein (serine-arginine rich) 1 pseudogene pseudo 100101416 Tilss3 - - - TNF-induced lethal shock susceptibility 3 unknown 100416252 Gm11909 - - 4|4 A4 predicted gene 11909 pseudo 434843 Rps12-ps11 EG434843|Gm5642 - X|X E3 ribosomal protein S12, pseudogene 11 pseudo 102635930 Gm33142 - - 8|8 predicted gene, 33142 ncRNA 80732 Mm.200378 NM_030557 ENSMUSG00000037730 Mynn 2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1 - 3|3 A3 myoneurin protein-coding 635455 Gm12026 - - 11|11 A3.1 predicted gene 12026 pseudo 15573 hug - - - hugger unknown 100125259 Trbj2-5 Gm16975 - 6 19.7 cM|6 B1 T cell receptor beta joining 2-5 other 109862 Jsr - - - jumbled spine and ribs unknown 66258 Mm.249809 NM_025450 ENSMUSG00000034211 Mrps17 1810006P02Rik|Mprs17 - 5|5 G1.3 mitochondrial ribosomal protein S17 protein-coding 100035150 Bntq6 - - - bone traits QTL 6 unknown 71469 Mm.100172 8430416G17Rik - - 18|18 RIKEN cDNA 8430416G17 gene unknown 102634029 XR_387503 Gm31713 - - 1 G3|1 predicted gene, 31713 ncRNA 67452 Mm.54126 NM_026164 ENSMUSG00000036257 Pnpla8 1200006O19Rik|AI467579|Ipla2(gamma) - 12|12 B2 patatin-like phospholipase domain containing 8 protein-coding 14569 Mm.153226 NM_008112 ENSMUSG00000021218 Gdi2 GDI-B|GDIB|Gdi3 - 13|13 A1 guanosine diphosphate (GDP) dissociation inhibitor 2 protein-coding 100038421 Mm.484522 Gm10733 - - 13 D2|13 predicted gene 10733 unknown 106861 Mm.273108 NM_134130 ENSMUSG00000002475 Abhd3 AA675331|LABH3 - 18|18 A1 abhydrolase domain containing 3 protein-coding 80915 Mm.34365 NM_023173 ENSMUSG00000026659 Dusp12 1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1 - 1|1 H3 dual specificity phosphatase 12 protein-coding 100038413 Mm.483761 D130050E23Rik - - - RIKEN cDNA D130050E23 gene unknown 108168907 XR_001784020 Gm46829 - - 3 H2|3 predicted gene, 46829 ncRNA 109319 8430422M14Rik - - 3|3 RIKEN cDNA 8430422M14 gene protein-coding 108168138 n-TMcat8 Trnam-cau|n-Tm8 - 13 A3.1|13 nuclear encoded tRNA methionine 8 (anticodon CAT) tRNA 100418038 Gm18960 - - 13|13 C3 family with sequence similarity 113, member B pseudogene pseudo 30930 Mm.260703 NM_133672 ENSMUSG00000020078 Vps26a AA407240|HB58|Vps26 - 10|10 B4 VPS26 retromer complex component A protein-coding 100038691 Mm.137751 Gm10344 - - X E3|X predicted gene 10344 unknown 546994 Gm16475 EG668533 - 7|7 F2 ankyrin repeat domain 26 pseudogene pseudo 100216540 NR_028564 ENSMUSG00000064780 Snord95 - - 11 B1.2|11 small nucleolar RNA, C/D box 95 snoRNA 102633078 XR_376110 Gm30992 - - 3 G3|3 predicted gene, 30992 ncRNA 100503792 Gm19898 - - 12|12 49.94 cM centromere protein W-like pseudo 671336 Mm.393476 NR_151545 ENSMUSG00000096950 Gm9530 - - 1 G3|1 predicted gene 9530 ncRNA 100038473 Mm.454521 Gm10490 - - - predicted gene 10490 protein-coding 100417171 Gm18436 - - X|X A3.3 MAK16 homolog pseudogene pseudo 114082 Axtofd2 - - - anxiety-open field defecation 2 unknown 21105 T(16;19)239Dn T239Dn - - reciprocal translocation, Chr 16 and 19, Davisson 239 other 102637905 Gm34601 - - 1|1 predicted gene, 34601 pseudo 791290 Mm.483886 Gm9938 - - 19 B|19 predicted gene 9938 unknown 102467428 n-TEctc13 n-Te13 - 3 F2.1|3 nuclear encoded tRNA glutamic acid 13 (anticodon CTC) tRNA 102638398 Gm34975 - - 17|17 predicted gene, 34975 ncRNA 225998 Mm.234641 NM_146095 ENSMUSG00000036192 Rorb Nr1f2|RZR-beta|RZRB|Rorbeta|hstp - 19|19 B RAR-related orphan receptor beta protein-coding 72956 2900040J22Rik - - 18|18 RIKEN cDNA 2900040J22 gene protein-coding 100034952 Heal13 - - - wound healing/regeneration 13 unknown 76497 Mm.46176 NM_029632 ENSMUSG00000036398 Ppp1r11 1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5 - 17 B1|17 19.16 cM protein phosphatase 1, regulatory (inhibitor) subunit 11 protein-coding 61015 D5Mit225 - - 5 7.9 cM DNA segment, Chr 5, Massachusetts Institute of Technology 225 unknown 109263 Mm.215745 NM_001081013 ENSMUSG00000049878 Rlf 9230110M18Rik|AI195322|MommeD8 - 4|4 D2.2 rearranged L-myc fusion sequence protein-coding 102638450 Gm35013 - - 3|3 predicted gene, 35013 pseudo 112084 Bsc1 Bsc10a - 10 38.56 cM brain size control 1 unknown 61371 D4Mit208 - - 4 83.58 cM DNA segment, Chr 4, Massachusetts Institute of Technology 208 unknown 102636751 Gm33737 - - Y|Y tRNA methyltransferase 112 homolog pseudo 105245523 Gm40969 - - 13|13 predicted gene, 40969 ncRNA 105243506 XR_871038 Gm39408 - - 9 E3.3|9 predicted gene, 39408 ncRNA 75168 4930533B18Rik - - 4|4 RIKEN cDNA 4930533B18 gene protein-coding 19555 Rb(4.18)3H Rb3H - - Robertsonian translocation, Chr 4 and 18, Harwell 3 other 102634876 Gm27228 - - 7|7 predicted gene 27228 pseudo 353242 Mm.74084 NM_172252 ENSMUSG00000024829 Mrpl21 BC028768|L21mt|MRP-L21 - 19|19 A mitochondrial ribosomal protein L21 protein-coding 102633555 XR_866752 ENSMUSG00000086756 Gm14051 - - 2 F2|2 64.15 cM predicted gene 14051 ncRNA 105243023 Gm39064 - - 7|7 predicted gene, 39064 ncRNA 85207 D10Mit151 - - - DNA segment, Chr 10, Massachusetts Institute of Technology 151 unknown 102633941 Mm.384086 NR_153766 Gm31641 - - 16 C4|16 predicted gene, 31641 ncRNA 109280017 LOC109280017 Mm140 - - VISTA enhancer mm140 biological-region 100416307 Gm18025 - - 12|12 A3 ribosomal protein S2 pseudogene pseudo 102633863 XR_379707 Gm31588 - - 9 E3.3|9 predicted gene, 31588 ncRNA 100042282 Gm12665 - - 11|11 A3.2 predicted gene 12665 protein-coding 102465172 NR_105756 ENSMUSG00000098658 Mir6338 Gm27678|mmu-mir-6338 - 11|11 B4 microRNA 6338 ncRNA 12304 Mm.2442 NM_009787 ENSMUSG00000025823 Pdia4 AI987846|Cai|ERp-72|Erp72 - 6 B2.3|6 22.94 cM protein disulfide isomerase associated 4 protein-coding 636791 Mm.423496 NM_001039248 ENSMUSG00000094002 Gm9866 EG636791 - 12 A2|12 predicted gene 9866 ncRNA 640370 Mm.349233 Gm7292 EG640370 - 6|6 F1 predicted gene 7292 protein-coding 102638741 Gm35233 - - 2|2 predicted gene, 35233 ncRNA 17306 Mm.316885 NM_008596 ENSMUSG00000027887 Sypl2 AI552439|Mg29 - 3|3 F2.3 synaptophysin-like 2 protein-coding 622665 Mm.388905 NM_001037916 ENSMUSG00000034035 Ccdc17 - - 4|4 D1 coiled-coil domain containing 17 protein-coding 100417468 Gm18630 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 105242738 XR_869361 Gm26799 - - 6 E3|6 predicted gene, 26799 ncRNA 105245381 XM_011243929 Gm40847 - - 12 A1.2|12 predicted gene, 40847 protein-coding 111673 Igk-V2 - - - immunoglobulin kappa chain variable 2 (V2) other 170930 Mm.29923 NM_133354 ENSMUSG00000020738 Sumo2 SUMO-2|Smt3A|Smt3b|Smt3h2 - 11|11 E2 small ubiquitin-like modifier 2 protein-coding 433078 Mm.328826 Gm5493 EG433078 - 17|17 A3.3 predicted gene 5493 protein-coding 101055974 Gm29755 - - 5 A1|5 predicted gene, 29755 pseudo 404355 Olfr238 Olfr238-ps1 - - olfactory receptor 238 protein-coding 383240 Rpl9-ps9 EG383240|Gm5227 - 17|17 B1 ribosomal protein L9,pseudogene 9 pseudo 102639520 XR_380888 Gm35816 - - 10 D2|10 predicted gene, 35816 ncRNA 170822 Mm.258320 NM_133247 ENSMUSG00000025437 Usp33 9830169D19Rik|AA409780|Vdu1 - 3|3 H3 ubiquitin specific peptidase 33 protein-coding 61228 D1Mit233 - - 1 20.67 cM DNA segment, Chr 1, Massachusetts Institute of Technology 233 unknown 207215 Mm.211899 NM_001037321 ENSMUSG00000047746 Fbxo40 9830003A13Rik|mKIAA1195 - 16|16 B3 F-box protein 40 protein-coding 67477 Mm.432526 NM_026185 ENSMUSG00000000686 Abhd15 1300007F04Rik - 11|11 B5 abhydrolase domain containing 15 protein-coding 76357 Mm.311344 NM_029580 ENSMUSG00000034442 Trmt5 2610027O18Rik|mKIAA1393 - 12|12 C3 TRM5 tRNA methyltransferase 5 protein-coding 104401 Mm.329650 NM_144868 ENSMUSG00000054874 Pcnx3 Pcnxl3|mKIAA4073 - 19|19 A pecanex homolog 3 protein-coding 62420 D14Mit179 - - 14 4.92 cM DNA segment, Chr 14, Massachusetts Institute of Technology 179 unknown 22333 Mm.3555 NM_011694 ENSMUSG00000020402 Vdac1 AL033343|Vdac5|mVDAC1|mVDAC5 - 11 B1.3|11 31.86 cM voltage-dependent anion channel 1 protein-coding 61762 D4Mit228 - - 4 15.91 cM DNA segment, Chr 4, Massachusetts Institute of Technology 228 unknown 61233 D1Mit251 - - 1 35.29 cM DNA segment, Chr 1, Massachusetts Institute of Technology 251 unknown 194590 Mm.442441 NM_178256 ENSMUSG00000040855 Reps2 POB1 - X|X F4 RALBP1 associated Eps domain containing protein 2 protein-coding 83428 Mm.313662 NM_031250 ENSMUSG00000044988 Ucn3 ucn III - 13|13 A1 urocortin 3 protein-coding 117110 D12Pgn1 - - - DNA segment, Chr 12, Paigen 1 unknown 104040 Lop8 Lop-8 - - lens opacity 8 protein-coding 110819 Tstap198-15 - - - tissue specific transplantation antigen P198-15 protein-coding 102640071 XR_870665 Gm36227 - - 9 A5.1|9 predicted gene, 36227 ncRNA 102639368 Gm35698 - - 7 A2|7 predicted gene, 35698 pseudo 17289 Mm.239655 NM_008587 ENSMUSG00000014361 Mertk Eyk|Mer|Nyk|nmf12 - 2|2 F1 c-mer proto-oncogene tyrosine kinase protein-coding 78654 NM_030146 1700066C05Rik - - 16|16 C3.3 RIKEN cDNA 1700066C05 gene protein-coding 102635605 XR_386112 Gm32896 - - 18 A2|18 predicted gene, 32896 ncRNA 102466822 NR_106094 ENSMUSG00000099286 Mir7235 Gm27986|mmu-mir-7235 - 11|11 D microRNA 7235 ncRNA 70725 Mm.389598 6330411D24Rik - - 4|4 E1 RIKEN cDNA 6330411D24 gene unknown 102631625 Gm29920 - - 7 A3|7 protein LTV1 homolog pseudo 105246643 LOC105246643 - - X F1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 70904 Mm.410836 4921515G04Rik - - 15|15 RIKEN cDNA 4921515G04 gene protein-coding 235386 Mm.259334 NM_177351 ENSMUSG00000035878 Hykk Agphd1|C630028N24Rik - 9|9 B hydroxylysine kinase 1 protein-coding 14064 Mm.440952 NM_010170 ENSMUSG00000021675 F2rl2 F730031A08|PAR3 - 13 D1|13 50.38 cM coagulation factor II (thrombin) receptor-like 2 protein-coding 668289 Gm9088 EG668289 - 12|12 A1.1 peptidyl prolyl isomerase H pseudogene pseudo 78532 Mm.234714 C030006F08Rik - - 6|6 RIKEN cDNA C030006F08 gene protein-coding 26419 Mm.21495 NM_016700 ENSMUSG00000021936 Mapk8 AI849689|JNK|JNK1|Prkm8|SAPK1 - 14|14 B mitogen-activated protein kinase 8 protein-coding 20646 Mm.274995 NM_013670 ENSMUSG00000102252 Snrpn 2410045I01Rik|HCERN3|Peg4|SMN|sm-D|snRNP-N - 7 B5|7 34.04 cM small nuclear ribonucleoprotein N protein-coding 320656 Mm.389696 C230071H17Rik - - 5|5 RIKEN cDNA C230071H17 gene protein-coding 433921 Gm5559 - - 5 E3|5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 233649 Mm.99556 NM_001033317 ENSMUSG00000030897 Cnga4 - - 7|7 E3 cyclic nucleotide gated channel alpha 4 protein-coding 109279900 LOC109279900 Mm82 - - VISTA enhancer mm82 biological-region 108168938 XR_001784273 Gm46851 - - 4 A5|4 predicted gene, 46851 ncRNA 100040877 Gm3017 - - 6|6 B2.3 aurora kinase A pseudogene pseudo 105246105 XR_876038 Gm41448 - - 16 B3|16 predicted gene, 41448 ncRNA 110033 Mm.286488 NM_145588 ENSMUSG00000030677 Kif22 AU021460|C81217|Kid|Kif22a - 7 F3|7 69.29 cM kinesin family member 22 protein-coding 73846 5430414B19Rik - - 14|14 RIKEN cDNA 5430414B19 gene unknown 270160 Mm.290285 NM_175562 ENSMUSG00000055069 Rab39 C230094F14Rik|Rab39a - 9|9 A5.3 RAB39, member RAS oncogene family protein-coding 100041850 Gm3544 - - 5 A3|5 mitochondrial ribosomal protein S36 pseudogene pseudo 102636232 XR_390685 Gm11184 - - 4 C3|4 39.46 cM predicted gene 11184 ncRNA 102637381 XR_866000 Gm17171 - - 2 A3|2 14.54 cM predicted gene 17171 ncRNA 99480 Mm.398647 NM_153806 ENSMUSG00000039756 Dnttip2 4930588M11Rik|AA408582|AU014960|HSU15552 - 3|3 G1 deoxynucleotidyltransferase, terminal, interacting protein 2 protein-coding 100124565 Vmn2r-ps75 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 75 pseudo 272633 Gm5066 EG272633 - 9 E3.1|9 solute carrier family 25, member 40 pseudogene pseudo 329502 Mm.330505 NM_177845 ENSMUSG00000050211 Pla2g4e 2310026J01Rik|C230096D22|Pla2epsilon - 2|2 E5 phospholipase A2, group IVE protein-coding 20390 Mm.1321 NM_009160 ENSMUSG00000021795 Sftpd AI573415|SP-D|Sfpd|Sftp4 - 14 B|14 22.36 cM surfactant associated protein D protein-coding 97725 C80113 - - - expressed sequence C80113 protein-coding 116514 Pvcan2 - - 9 20.71 cM protection against vaginal candidiasis 2 unknown 109280059 LOC109280059 Mm467 - - VISTA enhancer mm467 biological-region 621054 Tpm3-rs7 - - 14 E4|14 58.32 cM tropomyosin 3, related sequence 7 pseudo 105244307 XR_866765 Gm39942 - - 2 F3|2 predicted gene, 39942 ncRNA 404311 Mm.377319 NM_207551 ENSMUSG00000095706 Olfr209 MOR182-6 - 16|16 C1.3 olfactory receptor 209 protein-coding 102641497 LOC102641497 - - - UPF0729 protein C18orf32 homolog protein-coding 233230 Mm.377250 NM_205795 ENSMUSG00000070550 Mrgprb4 MrgB4 - 7|7 B4 MAS-related GPR, member B4 protein-coding 665596 Mm.371766 NM_001097979 ENSMUSG00000069307 Hist1h2bq Gm13646 - 13|13 A3.1 histone cluster 1, H2bq protein-coding 109462 Tlsr5 - - - thymic lymphoma suppressor region 5 unknown 110055 Sas2 Sas-2 - - serum antigenic substance 2 protein-coding 102634373 Gm31970 - - Y|Y tRNA methyltransferase 112 homolog pseudo 100862258 XM_003945339 Gm21596 - - 2 E4|2 predicted gene, 21596 protein-coding 27771 42J20F - - - DNA segment, 42J20F (Research Genetics) unknown 327743 Mm.208111 NM_001127376 ENSMUSG00000062074 Wisp3 CCN6|Gm735|WISP-3 - 10|10 B1 WNT1 inducible signaling pathway protein 3 protein-coding 103926450 Rhox7-ps2 Gm38669 - X A3.3|X reproductive homeobox 7, pseudogene 2 pseudo 74438 Mm.473368 NM_028940 ENSMUSG00000041216 Clvs1 4933402J24Rik|Clvl1|Rlbp1l1 - 4|4 A1 clavesin 1 protein-coding 667543 Mm.482054 NM_001167154 ENSMUSG00000095081 Gm8693 100042980|EG667543|Gm4144|Vmn1r108|Vmn1r156 - 7|7 A3 predicted gene 8693 protein-coding 102632769 XR_001778532 Gm30757 - - 8 A2|8 predicted gene, 30757 ncRNA 11308 Mm.205647 NM_007380 ENSMUSG00000058835 Abi1 E3B1|NAP1|Ssh3bp1|abi-1 - 2 A3|2 15.18 cM abl-interactor 1 protein-coding 320204 Mm.274099 NM_177101 ENSMUSG00000039958 Etfbkmt 4833442J19Rik|AI256744|ETFB-KMT|Mettl20 - 6|6 G3 electron transfer flavoprotein beta subunit lysine methyltransferase protein-coding 100034947 Igf1sl4 - - 11 4.7 cM IGF-1 serum levels 4 unknown 105242405 XR_881815 LOC105242405 - - 7 A1 uncharacterized LOC105242405 ncRNA 102631500 XR_384957 Gm29823 - - 16 C3.1|16 predicted gene, 29823 ncRNA 102641855 XR_877778 Gm38581 - - 19 B|19 predicted gene, 38581 ncRNA 100036521 Mm.446106 NM_001302353 ENSMUSG00000089862 Umad1 Gm16039 - 6|6 A1 UMAP1-MVP12 associated (UMA) domain containing 1 protein-coding 100049080 Fina1 - - - fat induced adiposity 1 unknown 433027 Gm5487 EG433027 - 16|16 C1.1 minichromosome maintenance deficient 7 pseudogene pseudo 232409 Mm.30870 NM_153506 ENSMUSG00000030155 Clec2e Clra|clr-a - 6|6 F3 C-type lectin domain family 2, member e protein-coding 319610 Mm.435141 9530083O12Rik - - 13|13 RIKEN cDNA 9530083O12 gene protein-coding 546902 Vmn1r-ps24 EG546902|Gm5992 - 6|6 C1 vomeronasal 1 receptor, pseudogene 24 pseudo 102634522 Gm32083 - - 12|12 predicted gene, 32083 ncRNA 105242431 XR_387677 Gm38700 - - 5 F|5 predicted gene, 38700 ncRNA 320021 Mm.379475 NR_155490 C430042M11Rik - - 17|17 E4 RIKEN cDNA C430042M11 gene ncRNA 100036219 Mbis4 Babs1|Bah1|Bana1 - - Mycobacterium bovis-induced systemic lupus erythematosus 4 unknown 105246928 XR_880455 Gm42123 - - 5 E3|5 predicted gene, 42123 ncRNA 212225 Mm.78540 NM_172504 ENSMUSG00000044457 Stk-ps2 4930509O22|EG212225|Gm4776 - 1 C1.1|1 serine/threonine kinase 2 pseudo 105395 Mm.42242 AW742635 - - - expressed sequence AW742635 protein-coding 52781 D6Bwg16e - - - DNA segment, Chr 6, Brigham & Women's Genetics 16 expressed unknown 102941 Mm.41588 NM_175327 ENSMUSG00000052364 B630019K06Rik AI843180 - X|X A1.1 F-box and leucine-rich repeat protein 17 pseudogene pseudo 62672 D15Mit145 - - 15 32.17 cM DNA segment, Chr 15, Massachusetts Institute of Technology 145 unknown 105246071 Mm.426799 NR_151506 4930509G22Rik - - 16|16 A1 RIKEN cDNA 4930509G22 gene ncRNA 100039417 Gm2221 - - 8 A4|8 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105246771 XR_878710 Gm42010 - - 5 F|5 predicted gene, 42010 ncRNA 102632958 XR_373390 Gm30900 - - 1 C1.1|1 predicted gene, 30900 ncRNA 104709 Mm.234573 NM_001004435 ENSMUSG00000046207 Pik3r6 BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP - 11|11 B3 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 16576 Mm.101633 NM_010626 ENSMUSG00000050382 Kif7 - - 7|7 D2 kinesin family member 7 protein-coding 666777 Gm8282 EG666777 - 9|9 E3.1 predicted gene 8282 pseudo 628976 Gm16458 EG667633 - X|X B odorant binding protein Ia pseudogene pseudo 52761 D6Bwg0425e - - - DNA segment, Chr 6, Brigham & Women's Genetics 0425 expressed unknown 384619 Mm.214931 NM_201374 ENSMUSG00000038292 Ccdc155 Gm1434|KASH5 - 7|7 B3 coiled-coil domain containing 155 protein-coding 68736 Mm.288490 NM_001037742 ENSMUSG00000048495 Tyw5 1110034B05Rik - 1|1 C1.3 tRNA-yW synthesizing protein 5 protein-coding 21306 T(X;4)37H T37H - - reciprocal translocation, Chr X and 4, Harwell 37 other 218038 Mm.101650 NM_175007 ENSMUSG00000021314 Amph - - 13 A2|13 6.89 cM amphiphysin protein-coding 320998 Mm.403555 E230034D01Rik - - 9|9 RIKEN cDNA E230034D01 gene ncRNA 106821 Mm.203943 NM_207219 ENSMUSG00000040771 Oard1 AI314976|AW558560 - 17|17 C O-acyl-ADP-ribose deacylase 1 protein-coding 435626 Mm.240447 NM_001034060 ENSMUSG00000061815 Rufy4 F930048N03Rik - 1|1 C3 RUN and FYVE domain containing 4 protein-coding 77415 C030015E24Rik - - 5|5 RIKEN cDNA C030015E24 gene protein-coding 59041 Mm.28761 NM_021537 ENSMUSG00000026277 Stk25 1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1 - 1 D|1 47.25 cM serine/threonine kinase 25 (yeast) protein-coding 77296 Mm.30588 NM_029894 ENSMUSG00000019909 Fam162b 9430073N08Rik - 10|10 B3 family with sequence similarity 162, member B protein-coding 111742 Mpmv22 Mpmv-22 - - modified polytropic murine leukemia virus 22 other 110538 Lfo2 Lfo-2|Lvfo-2 - - liver 40-50 thousand Mol. Wt. protein 2 protein-coding 100036400 Mofp1 Mof1 - - mesenteric and omental fat pad weight 1 unknown 61896 D1Mit453 - - 1 72.52 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 453 unknown 270198 Mm.132391 NM_173019 ENSMUSG00000025648 Pfkfb4 C230090D14 - 9|9 F2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 protein-coding 14786 Mm.276702 NM_010346 ENSMUSG00000019312 Grb7 mKIAA4028 - 11 D|11 61.75 cM growth factor receptor bound protein 7 protein-coding 15944 Mm.29938 NM_008326 ENSMUSG00000046879 Irgm1 Ifggd3|Ifi1|Iigp3|Iipg3|Irgm - 11|11 B1.2 immunity-related GTPase family M member 1 protein-coding 101954205 Gm29813 - - 6 B1|6 proline-rich polypeptide 3 pseudogene pseudo 111565 Xmv24 Xmv-24 - - xenotropic murine leukemia virus 24 other 545517 Gm10356 EG545517|Gm28084 - 3|3 C zinc finger protein, subfamily 1A, 5 pseudogene pseudo 71363 Mm.158680 NM_027771 ENSMUSG00000056706 Krtap7-1 5430433J05Rik - 16|16 C3.3 keratin associated protein 7-1 protein-coding 667827 Gm8835 EG667827 - 17 B1|17 predicted gene 8835 pseudo 100417590 Gm18702 - - 5|5 E5 discs, large homolog 5 pseudogene pseudo 62445 D10Mit287a D10Mit287 - 10 38.55 cM DNA segment, Chr 10, Massachusetts Institute of Technology 287a unknown 105246498 XR_877577 Gm41782 - - 18 E3|18 predicted gene, 41782 ncRNA 66765 Mm.440412 NM_025752 ENSMUSG00000090369 4933411K16Rik - - 19|19 C3 RIKEN cDNA 4933411K16 gene protein-coding 102633016 Gm30946 - - 3|3 predicted gene, 30946 pseudo 67078 Mm.28541 NM_025954 ENSMUSG00000043445 Pgp 1700012G19Rik|AI481330|AUM|G3PP - 17|17 A3.3 phosphoglycolate phosphatase protein-coding 84652 Mm.304976 NM_053090 ENSMUSG00000028995 Fam126a AB030242|Drctnnb1a - 5|5 A3 family with sequence similarity 126, member A protein-coding 61452 D6Mit143 - - 6 32.21 cM DNA segment, Chr 6, Massachusetts Institute of Technology 143 unknown 105245158 XR_001779771 Gm40650 - - 10 B3|10 predicted gene, 40650 ncRNA 242860 Mm.254286 NM_001080977 ENSMUSG00000039968 Rsbn1l 8430412F05Rik|AI447441|C330002G24Rik - 5|5 A3 round spermatid basic protein 1-like protein-coding 77188 Mm.446910 A430105D02Rik - - 1|1 RIKEN cDNA A430105D02 gene protein-coding 16604 Mm.195787 NR_033120 ENSMUSG00000060161 Klk1b7-ps 1700127D06Rik|Klk-ps2|mGK-7 - 7 B3|7 28.42 cM kallikrein 1-related peptidase b7, pseudogene pseudo 102634926 XR_881238 Gm12426 - - 4 B1|4 26.0 cM predicted gene 12426 ncRNA 105244766 XM_011240815 Gm40318 S100p - 5 B3|5 S100 calcium binding protein P pseudogene pseudo 111973 Rnu3b - - - U3B small nuclear RNA complex snRNA 23793 Mm.483208 NM_011781 ENSMUSG00000071937 Adam25 - - 8|8 A4 a disintegrin and metallopeptidase domain 25 (testase 2) protein-coding 170829 Mm.185680 NM_177409 ENSMUSG00000041779 Tram2 C330003D03Rik - 1|1 A4 translocating chain-associating membrane protein 2 protein-coding 100041232 Gm13121 - - 4|4 E1 high mobility group box 2 pseudogene pseudo 55979 Mm.8684 NM_018862 ENSMUSG00000034254 Agpat1 1-AGP|1-AGPAT|AW047140 - 17 B1|17 18.18 cM 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) protein-coding 100034806 Pgia22 - - - proteoglycan induced arthritis 22 unknown 102634864 Gm32347 - - Y|Y predicted gene, 32347 protein-coding 102638883 XR_378746 Gm35340 - - 8 A1.1|8 predicted gene, 35340 ncRNA 110405 Igf1q1 - - - insulin-like growth factor 1 QTL 1 unknown 404482 Olfr1169-ps1 GA_x5J8B7W4NS2-369154-369459 - 2|2 D olfactory receptor 1169, pseudogene 1 pseudo 330721 Mm.113940 NM_177898 ENSMUSG00000037738 Nek5 6530411J22|BB049667 - 8|8 A2 NIMA (never in mitosis gene a)-related expressed kinase 5 protein-coding 102640986 Gm36916 - - 3|3 predicted gene, 36916 ncRNA 109279952 LOC109279952 Mm407 - - VISTA enhancer mm407 biological-region 100417776 Gm18817 - - 11|11 A3.1 tudor and KH domain containing protein pseudogene pseudo 69347 Mm.45822 NM_027048 ENSMUSG00000069118 1700008P02Rik - - 3|3 A1 RIKEN cDNA 1700008P02 gene protein-coding 382413 Gm5175 EG382413 - 10|10 D1 predicted gene 5175 pseudo 21350 Mm.56955 NM_009317 ENSMUSG00000028417 Tal2 bHLHa19 - 4 B2|4 28.75 cM T cell acute lymphocytic leukemia 2 protein-coding 100035206 Mpdk2 - - - modifier of polycystic kidney disease 2 unknown 62655 D14Mit176 - - 14 50.9 cM DNA segment, Chr 14, Massachusetts Institute of Technology 176 unknown 52040 Mm.29385 NM_175934 ENSMUSG00000039220 Ppp1r10 2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts - 17 B1|17 18.77 cM protein phosphatase 1, regulatory subunit 10 protein-coding 102640354 XR_881134 Gm36438 - - 4 A1|4 predicted gene, 36438 ncRNA 242519 Mm.246618 NM_177361 ENSMUSG00000073811 Ifna12 - - 4|4 C4 interferon alpha 12 protein-coding 68879 Mm.292001 NM_133701 ENSMUSG00000002455 Prpf6 1190003A07Rik|2610031L17Rik|ANT-1|U5-102K - 2|2 H4 pre-mRNA splicing factor 6 protein-coding 62349 D1Mit404 - - 1 82.75 cM DNA segment, Chr 1, Massachusetts Institute of Technology 404 unknown 104486 Mm.257482 AU019300 - - - expressed sequence AU019300 unknown 102465616 NR_105985 ENSMUSG00000099134 Mir7018 Gm27606|mmu-mir-7018 - 4|4 D3 microRNA 7018 ncRNA 80987 Mm.192416 NM_030729 ENSMUSG00000032598 Nckipsd AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp - 9|9 F2 NCK interacting protein with SH3 domain protein-coding 27620 D17Tu49 - - - DNA segment, Chr 17, Tubingen 49 unknown 320641 E130120C16Rik - - 9|9 RIKEN cDNA E130120C16 gene protein-coding 67433 Mm.101586 NM_024201 ENSMUSG00000021578 Ccdc127 0610011N22Rik|5430420E17Rik|A430066A18|AI256405|AW050060|C130002N06 - 13|13 C1 coiled-coil domain containing 127 protein-coding 102636621 XR_387858 Gm33632 - - 8 C3|8 predicted gene, 33632 ncRNA 69338 Mm.398308 NR_045477 ENSMUSG00000085944 1700003D09Rik - - 11|11 D RIKEN cDNA 1700003D09 gene ncRNA 108450 Pmv61 Pmv-61 - - polytropic murine leukemia virus 61 other 102467383 n-Tsta1 - - - nuclear encoded tRNA suppressor ta1 (anticodon TTA) tRNA 73574 Mm.157044 1700095J07Rik - - 6|6 RIKEN cDNA 1700095J07 gene protein-coding 667777 Gm8807 EG667777 - 18|18 E3 high mobility group box 1 pseudogene pseudo 68107 Mm.262369 NM_026562 ENSMUSG00000078653 Cntd1 1700051C09Rik|4921513J16Rik|5430417M23Rik|Cntd - 11|11 D cyclin N-terminal domain containing 1 protein-coding 50722 Mm.27287 NM_015789 ENSMUSG00000030792 Dkkl1 AI414495|SGY|SGY-1|SGY1|Soggy|mSgy - 7 B3|7 29.19 cM dickkopf-like 1 protein-coding 321014 Mm.442588 NR_040348 ENSMUSG00000060029 4930473A02Rik - - 2|2 F1 RIKEN cDNA 4930473A02 gene ncRNA 19534 Rb(3.9)12Lub Rb12Lub - - Robertsonian translocation, Chr 3 and 9, Lubeck 12 other 110840 Sycp1-rs2 Sycp-rs2 - - synaptonemal complex protein 1, related sequence 2 protein-coding 381481 Samd13 Gm1652 - 3|3 H2 sterile alpha motif domain containing 13 protein-coding 100093693 Trnag-ucc - - - transfer RNA glycine (anticodon UCC) tRNA 109280114 LOC109280114 Mm1340 - - VISTA enhancer mm1340 biological-region 100087 Mm.440007 NM_029571 ENSMUSG00000073775 Kti12 1110001A12Rik|AI326810|AU014758 - 4|4 C7 KTI12 homolog, chromatin associated protein-coding 114574 Hdl1 - - 2 38.54 cM high density lipoprotein (HDL) level 1 unknown 546931 Gm5996 EG546931 - 7|7 A1 predicted gene 5996 pseudo 100316686 NR_035447 ENSMUSG00000084565 Mir1901 Mirn1901|mmu-mir-1901 - 18 A1|18 5.88 cM microRNA 1901 ncRNA 106677017 LOC106677017 - - - Mpo distal enhancer region biological-region 449522 Mm.313523 E130314M14Rik - - 19|19 C3 RIKEN cDNA E130314M14 gene protein-coding 100504421 Mm.217071 NR_045299 ENSMUSG00000097277 2900076A07Rik WI1-1616M8.2 - 7|7 D3 RIKEN cDNA 2900076A07 gene ncRNA 69294 Mm.46167 NM_027024 ENSMUSG00000036924 Cst13 1700006C19Rik|Cymg1|Mtcg1 - 2|2 G3 cystatin 13 protein-coding 320798 Mm.417784 XR_879086 4831440D22Rik Gm45291 - 8|8 C5 RIKEN cDNA 4831440D22 gene ncRNA 105244855 Gm40389 - - 12|12 predicted gene, 40389 ncRNA 12340 Mm.19142 NM_009797 ENSMUSG00000070372 Capza1 CAPZ|CAZ1|Cappa1|capZ alpha-1 - 3 F2.2|3 45.88 cM capping protein (actin filament) muscle Z-line, alpha 1 protein-coding 493089 Pltpq4 - - 15 30.86 cM phospholipid transfer protein activity QTL 4 unknown 381346 Gm13194 - - 2|2 A1 predicted gene 13194 protein-coding 110120380 LOC110120380 - - - VISTA enhancer mm554 biological-region 14584 Mm.24402 NM_013529 ENSMUSG00000020363 Gfpt2 AI480523|GFAT2 - 11 B1.2|11 29.9 cM glutamine fructose-6-phosphate transaminase 2 protein-coding 654819 Mm.290758 9930004E17Rik - - - RIKEN cDNA 9930004E17 gene protein-coding 102634389 Mm.440563 NR_155276 ENSMUSG00000078648 LOC102634389 - - 15 F1 uncharacterized LOC102634389 ncRNA 67698 Mm.272705 NM_026321 ENSMUSG00000051185 Fam174a 2310044D20Rik|Fam174|Naa6|Tmem157 - 1|1 D family with sequence similarity 174, member A protein-coding 105244915 XR_872802 Gm40437 - - 12 C2|12 predicted gene, 40437 ncRNA 102638629 XR_001778521 Gm35149 - - 8 A1.1|8 predicted gene, 35149 ncRNA 258748 Mm.223180 NM_146753 ENSMUSG00000075121 Olfr1195 MOR230-4 - 2|2 D olfactory receptor 1195 protein-coding 100035945 Asdq7 - - - atrial septal defect QTL 7 unknown 329384 Mm.268037 NM_178595 ENSMUSG00000053746 Ptrh1 2210013M04Rik|AW046744 - 2|2 B peptidyl-tRNA hydrolase 1 homolog protein-coding 102637671 Gm13198 - - 2 A1|2 3.27 cM solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 pseudo 100043034 Mm.422606 NM_001177767 ENSMUSG00000067919 Rex2 Gm13138 - 4|4 E1 reduced expression 2 protein-coding 30060 Mm.30988 NM_013900 ENSMUSG00000022780 Meltf CD228|MTf|Mfi2 - 16|16 B2 melanotransferrin protein-coding 224617 Mm.301585 NM_173186 ENSMUSG00000036473 Tbc1d24 9630033P11|C530046L02Rik|mKIAA1171 - 17|17 A3.3 TBC1 domain family, member 24 protein-coding 100861867 Gm21281 - - Y|Y predicted gene, 21281 protein-coding 102636359 Mm.463314 XR_001780846 Gm33447 - - 13 D1|13 predicted gene, 33447 ncRNA 27423 Mm.24399 NM_013793 Klra15 Ly49O - 6|6 F3 killer cell lectin-like receptor, subfamily A, member 15 protein-coding 109279880 LOC109279880 Mm12 - - VISTA enhancer mm12 biological-region 212728 Mm.482479 NM_001159907 ENSMUSG00000090290 Tarbp1 Gm17296|Gm179 - 8|8 E2 TAR RNA binding protein 1 protein-coding 319415 Mm.332442 NM_001081208 ENSMUSG00000044499 Hs3st5 D930005L05Rik|Gm1151|Hs3ost5 - 10|10 B1 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 protein-coding 108168621 XM_017318829 LOC108168621 - - Y D Y-linked testis-specific protein 1-like protein-coding 666722 Gm8255 EG666722 - 12|12 C3 ribosomal protein large PO subunit pseudogene pseudo 193453 Mm.124080 Gm11292 - - 13 A3.1|13 predicted gene 11292 protein-coding 100418406 Gm19189 - - 13|13 A1 guanine nucleotide binding protein (G protein), alpha inhibiting 3 pseudogene pseudo 102633733 Gm31487 - - 14|14 predicted gene, 31487 ncRNA 108433 Xmmv49 Xmmv-49|Xp-8 - - xenotropic-MCF leukemia virus 49 other 108169161 XR_001785351 Gm46971 - - 6 E3|6 predicted gene, 46971 ncRNA 14711 Mm.29395 NM_010321 ENSMUSG00000002769 Gnmt - - 17 22.9 cM|17 C glycine N-methyltransferase protein-coding 21179 T(4;17)2Lws T2Lws - - reciprocal translocation, Chr 4 and 17, Lewis 2 other 102631665 XR_375854 Gm29948 - - 3 F2.1|3 predicted gene, 29948 ncRNA 73306 Mm.362328 NR_045624 ENSMUSG00000099911 1700044C05Rik - - 14|14 E4 RIKEN cDNA 1700044C05 gene ncRNA 67768 Mm.296532 NM_026366 ENSMUSG00000044442 N6amt1 5830445C04Rik|Hemk2|Pred28 - 16|16 C3.3 N-6 adenine-specific DNA methyltransferase 1 (putative) protein-coding 359880 DXMgc41 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 41 unknown 99683 Mm.192303 NM_207209 ENSMUSG00000001052 Sec24b AI605202|SEC24 - 3|3 G3 Sec24 related gene family, member B (S. cerevisiae) protein-coding 100043718 XR_869345 Rpl36-ps12 Gm4604 - 6 E1|6 ribosomal protein L36, pseudogene 12 pseudo 674082 Vhq52.a22.67 - - 12|12 immunoglobulin heavy chain V region VHQ52.a22.67 other 547011 Gm6011 EG547011 - 8|8 A4 WW domain binding protein 11 pseudogene pseudo 110120428 LOC110120428 - - - VISTA enhancer mm1575 biological-region 71661 Mm.439894 NR_038165 ENSMUSG00000109644 0610005C13Rik AI182092 - 7 B3|7 RIKEN cDNA 0610005C13 gene ncRNA 29829 Del(11)1Brd - - - deletion, Chr 11, Bradley 1 other 207352 Mm.297105 NM_001029982 ENSMUSG00000055319 Sec23ip D7Ertd373e|p125 - 7 F3|7 70.51 cM Sec23 interacting protein protein-coding 100929 Mm.271296 NM_178897 ENSMUSG00000056310 Tyw1 AW125391|Rsafd1 - 5|5 G1.3 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) protein-coding 100125856 Hpw1 - - - high prostate weight 1 unknown 236663 Mm.473680 NM_001114529 ENSMUSG00000069038 H2al1j EG236663|Gm4906 - X|X A1.1 H2A histone family member L1J protein-coding 21892 Mm.418367 NM_009390 ENSMUSG00000053626 Tll1 Tll|Tll-1|b2b2476Clo - 8 B3.1|8 32.19 cM tolloid-like protein-coding 108302 Mmv5 Mmv-5 - - MCF endogenous virus 5 other 71322 4933431C10Rik - - 7|7 RIKEN cDNA 4933431C10 gene protein-coding 105243899 Gm39620 - - 1|1 predicted gene, 39620 ncRNA 15214 Mm.103573 NM_013904 ENSMUSG00000019789 Hey2 CHF1|Herp1|Hrt2|bHLHb32|hesr2 - 10|10 A4 hairy/enhancer-of-split related with YRPW motif 2 protein-coding 666529 Mm.412144 XR_869817 Gm8149 EG666529 - 7|7 E1 predicted gene 8149 unknown 69376 Mm.55996 NM_027061 ENSMUSG00000017195 Zpbp2 1700017D11Rik|2610022C02Rik|ZPBPL - 11|11 D zona pellucida binding protein 2 protein-coding 106459 Mm.440765 BB163080 - - - expressed sequence BB163080 protein-coding 547412 Fam220-ps EG547412|Gm15380|Gm6036 - X A7.3|X predicted pseudogene 6036 pseudo 70571 Mm.334297 NM_183289 ENSMUSG00000091002 Tcerg1l 5730476P14Rik - 7|7 F4 transcription elongation regulator 1-like protein-coding 246080 Mm.207067 NM_139220 ENSMUSG00000037790 Defb7 BD-7|Defb15 - 8|8 A1.3 defensin beta 7 protein-coding 100503343 Gm19644 - - 1 C1.1|1 25.84 cM zinc finger protein 58-like pseudo 28295 Mm.268691 NM_138601 ENSMUSG00000053329 D10Jhu81e C21orf33|ES1 - 10 C1|10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 81 expressed protein-coding 100038652 Mm.258279 Gm10688 - - - predicted gene 10688 unknown 432548 Rpsa-ps4 Gm12113 - 11|11 A4 ribosomal protein S4, pseudogene 4 pseudo 257848 Gm21942 GA_x5J8B7W3BSW-105992-106801 - 4 D2.1|4 olfactory receptor GA_x5J8B7W3BSW-105992-106801 pseudo 66781 4933437F24Rik - - 4|4 RIKEN cDNA 4933437F24 gene protein-coding 100042174 Gm12882 - - 4|4 D2.2 predicted gene 12882 pseudo 102637034 XR_380159 Gm33945 - - 10 A3|10 predicted gene, 33945 ncRNA 258382 Mm.377319 NM_146384 Olfr208 MOR182-6 - 16|16 C1.3 olfactory receptor 208 protein-coding 14972 Mm.422886 NM_001001892 ENSMUSG00000061232 H2-K1 H-2K|H-2K(d)|H2-K|K-f - 17 B1|17 17.98 cM histocompatibility 2, K1, K region protein-coding 101056073 Mm.276881 NM_001324553 ENSMUSG00000078503 Zfp990 Gm13225 - 4 E1|4 78.2 cM zinc finger protein 990 protein-coding 76212 Mm.491635 6530403M18Rik - - X|X A5 RIKEN cDNA 6530403M18 gene unknown 105245657 Gm41082 - - 14|14 predicted gene, 41082 ncRNA 106722 Mm.390956 NM_001033221 ENSMUSG00000073414 Mpig6b AU023871|C6orf25|G6b|Ng31 - 17|17 B1 megakaryocyte and platelet inhibitory receptor G6b protein-coding 102467548 n-TIaat16 n-Ti16 - 7 A3|7 nuclear encoded tRNA isoleucine 16 (anticodon TAT) tRNA 105243084 XR_880990 Gm39111 - - 7 F4|7 predicted gene, 39111 ncRNA 26420 Mm.68933 NM_016961 ENSMUSG00000020366 Mapk9 AI851083|JNK2|Prkm9|p54aSAPK - 11|11 B1.2-B1.3 mitogen-activated protein kinase 9 protein-coding 320684 Mm.421433 NR_015544 ENSMUSG00000085631 9630028H03Rik - - 2|2 F3 RIKEN cDNA 9630028H03 gene ncRNA 105243499 XR_871014 Gm39401 - - 9 E3.3|9 predicted gene, 39401 ncRNA 70691 Mm.335676 NM_027510 ENSMUSG00000031125 3830403N18Rik Xlrl - X|X A5 RIKEN cDNA 3830403N18 gene protein-coding 105246556 Gm41830 - - 19|19 predicted gene, 41830 ncRNA 218232 Mm.315089 NM_207232 ENSMUSG00000038042 Ptpdc1 AI843923|AW456874|Naa-1|Ptpcd1 - 13|13 A5 protein tyrosine phosphatase domain containing 1 protein-coding 61204 D1Mit136 - - 1 49.26 cM DNA segment, Chr 1, Massachusetts Institute of Technology 136 unknown 61180 D18Mit66 - - 18 2.42 cM DNA segment, Chr 18, Massachusetts Institute of Technology 66 unknown 622958 Gm6374 EG622958 - 1|1 C5 mitochondrial ribosome recycling factor pseudogene pseudo 228869 Mm.233080 NM_144892 ENSMUSG00000039804 Ncoa5 CIA - 2|2 H3 nuclear receptor coactivator 5 protein-coding 102639545 Mm.367911 XR_379295 Gm35835 - - 9 A5.1|9 predicted gene, 35835 ncRNA 21045 T(10;16)232Dn T232Dn - - reciprocal translocation, Chr 10 and 16, Davisson 232 other 105243486 XR_880225 Gm39394 - - 11 D|11 predicted gene, 39394 ncRNA 235315 Mm.220945 NM_178709 ENSMUSG00000042790 Rnf214 D130054N24Rik - 9|9 A5.2 ring finger protein 214 protein-coding 110120520 LOC110120520 - - - VISTA enhancer mm1555 biological-region 381373 Mm.330293 NM_001005343 ENSMUSG00000068859 Sp9 - - 2|2 C3 trans-acting transcription factor 9 protein-coding 258296 Mm.377418 NM_146299 ENSMUSG00000050028 Olfr745 MOR106-11 - 14|14 C1 olfactory receptor 745 protein-coding 110689 Csi - - - corticosteroid side chain isomerase activity protein-coding 381122 Mm.81496 NM_001033444 ENSMUSG00000043705 Capn13 CANP 13|Gm943 - 17|17 E2 calpain 13 protein-coding 627914 Mm.466613 NM_001100415 Gm14430 - - 2|2 H4 predicted gene 14430 protein-coding 240156 Gm4947 EG240156 - 17|17 E1.3 predicted gene 4947 protein-coding 19373 Mm.828 NM_009019 ENSMUSG00000061311 Rag1 Rag-1 - 2 E2|2 53.88 cM recombination activating gene 1 protein-coding 81702 Mm.245522 NM_030886 ENSMUSG00000055204 Ankrd17 4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697 - 5|5 E1 ankyrin repeat domain 17 protein-coding 102638519 XR_381134 Gm35063 - - 11 A4|11 predicted gene, 35063 ncRNA 102465595 NR_105951 ENSMUSG00000099290 Mir6985 Gm27719|mmu-mir-6985 - 19|19 A microRNA 6985 ncRNA 20767 sps dd - - spontaneous seizure unknown 70853 Mm.148848 NM_027580 ENSMUSG00000050122 Vwa3b 4921511C04Rik|A230074B11Rik|Gm555 - 1|1 B von Willebrand factor A domain containing 3B protein-coding 232415 Mm.290598 NM_001014997 ENSMUSG00000071158 Gm156 Klrh1 - 6|6 F3 predicted gene 156 protein-coding 102640948 XR_376484 Gm36893 - - 4 C6|4 predicted gene, 36893 ncRNA 100043214 Mm.425908 Trav14d-2 EG667553|Gm16454|Tcra-V2.1 - 14 C2|14 27.16 cM T cell receptor alpha variable 14D-2 other 101056057 Gm26853 - - 8|8 predicted gene, 26853 ncRNA 493179 Vtbt7 - - 9 26.06 cM vertebral trabecular bone trait 7 unknown 224796 Mm.37666 NM_172621 ENSMUSG00000023959 Clic5 5730531E12Rik|B330005L24|Gm322|jbg|nmf318 - 17|17 B3 chloride intracellular channel 5 protein-coding 108168635 XM_017318843 LOC108168635 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 233789 Mm.309053 NM_177180 ENSMUSG00000030655 Smg1 2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421 - 7|7 F1 SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans) protein-coding 102635209 Gm32604 - - 10|10 predicted gene, 32604 ncRNA 100503892 Mm.32182 AI746446 - - 13|13 expressed sequence AI746446 unknown 62950 D11Mit331 - - 11 66.71 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 331 unknown 61221 D1Mit215 - - 1 39.91 cM DNA segment, Chr 1, Massachusetts Institute of Technology 215 unknown 102466677 NR_105859 ENSMUSG00000099301 Mir3473e Gm27422|mmu-mir-3473e - 5|5 B1 microRNA 3473e ncRNA 319146 Mm.368232 NM_197889 ENSMUSG00000096854 Ifnz 6030405N23Rik|BGIF|Lmtn - 4|4 C4 interferon zeta protein-coding 61846 D1Mit412 - - 1 15.15 cM DNA segment, Chr 1, Massachusetts Institute of Technology 412 unknown 228889 Mm.295031 NM_153065 ENSMUSG00000017999 Ddx27 C86129 - 2|2 H3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 protein-coding 108021848 LOC108021848 - - - Sox9 enhancer E195 biological-region 62062 D10Mit17 - - 10 9.78 cM DNA segment, Chr 10, Massachusetts Institute of Technology 17 unknown 11766 Mm.238879 NM_007455 ENSMUSG00000040701 Ap1g2 Adtg2|G2ad - 14|14 C3 adaptor protein complex AP-1, gamma 2 subunit protein-coding 493136 Lxw2 - - 6 24.42 cM lupus BXSB x NZW 2 unknown 27456 44S - - - DNA segment, 44S unknown 319854 Mm.403818 NR_040332 ENSMUSG00000087278 A930006I01Rik - - 2|2 E2 RIKEN cDNA A930006I01 gene ncRNA 102635619 XR_376660 Gm32908 - - 4 D2.2|4 predicted gene, 32908 ncRNA 67160 Mm.247762 NM_026007 ENSMUSG00000071644 Eef1g 2610301D06Rik|AA407312|EF1G - 19|19 A eukaryotic translation elongation factor 1 gamma protein-coding 14765 Mm.33336 NM_010340 ENSMUSG00000056380 Gpr50 H9 - X A7.3|X 36.98 cM G-protein-coupled receptor 50 protein-coding 100417331 Mup-ps1 Gm12547 - 4|4 B3 major urinary protein, pseudogene 1 pseudo 100044983 Gm20940 - - 3|3 predicted gene, 20940 pseudo 112015 Dob3 Do3 - 15 15.74 cM dietary obesity 3 unknown 26569 Mm.330113 NM_011989 ENSMUSG00000059316 Slc27a4 BB144259|FATP4 - 2 B|2 20.64 cM solute carrier family 27 (fatty acid transporter), member 4 protein-coding 62232 D17Mit42 - - 17 50.3 cM DNA segment, Chr 17, Massachusetts Institute of Technology 42 unknown 670727 Mm.421352 NR_046043 ENSMUSG00000085751 Gm15412 - - 7|7 E1 predicted gene 15412 ncRNA 100040431 Gm2767 - - 8 B2|8 ferritin light chain 1 pseudogene pseudo 102637776 XR_389183 Gm34502 - - 11 E2|11 predicted gene, 34502 ncRNA 100040662 Gm2892 - - X A3.1|X predicted pseudogene 2892 protein-coding 61256 D2Mit138 - - 2 69.2 cM DNA segment, Chr 2, Massachusetts Institute of Technology 138 unknown 102531 AI464180 - - - expressed sequence AI464180 protein-coding 140810 Mm.275698 NM_080788 ENSMUSG00000090100 Ttbk2 2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847 - 2|2 E5 tau tubulin kinase 2 protein-coding 97958 C78376 - - - expressed sequence C78376 unknown 226040 Mm.391170 NM_183160 ENSMUSG00000048572 Tmem252 E030010A14Rik - 19|19 B transmembrane protein 252 protein-coding 207920 Mm.387719 NM_194055 ENSMUSG00000040728 Esrp1 2210008M09Rik|A630065D16|BC031468|Rbm35a - 4|4 A1 epithelial splicing regulatory protein 1 protein-coding 19079 Mm.458152 NM_031869 ENSMUSG00000029513 Prkab1 1300015D22Rik|AU021155|E430008F22 - 5|5 F protein kinase, AMP-activated, beta 1 non-catalytic subunit protein-coding 627543 Gm6767 EG627543 - 16|16 B5 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 666629 Gm8200 EG666629 - 5|5 E5 predicted gene 8200 pseudo 102637077 XR_380559 Gm33979 - - 10 B5.3|10 predicted gene, 33979 ncRNA 111697 Mpmv2 Mpmv-2 - - modified polytropic murine leukemia virus 2 other 105245263 XR_871952 Gm40741 - - 10 C2|10 predicted gene, 40741 ncRNA 73634 Mm.48850 NM_028589 ENSMUSG00000018479 1700125H20Rik - - 11|11 C RIKEN cDNA 1700125H20 gene protein-coding 66325 1700008H02Rik - - 5|5 RIKEN cDNA 1700008H02 gene protein-coding 102635468 XR_374914 Gm32798 - - 2 E5|2 predicted gene, 32798 ncRNA 171212 Mm.271670 NM_134189 ENSMUSG00000020520 Galnt10 AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase - 11|11 B1.3 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 105247042 Gm42220 - - 5|5 predicted gene, 42220 ncRNA 61162 D13Mit17 - - 13 7.73 cM DNA segment, Chr 13, Massachusetts Institute of Technology 17 unknown 100036290 Mbsyd - - 4 39.52 cM metabolic syndrome unknown 102632204 XR_390985 Gm30344 - - 4 E2|4 predicted gene, 30344 ncRNA 100526541 NR_037284 ENSMUSG00000077869 Mir344e mir-344e|mmu-mir-344e - 7 C|7 34.28 cM microRNA 344e ncRNA 111188155 LOC111188155 FIRE - - Csf1r promoter/intronic regulatory region biological-region 114264 Manz9 QTL-C13.1 - - mandible size 9 unknown 62920 D10Mit251 - - 10 14.92 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 251 unknown 105245296 Gm40771 - - 10|10 predicted gene, 40771 ncRNA 108175347 LOC108175347 - - - Gcg promoter region biological-region 108168346 XR_001782207 Gm46601 - - 17 C|17 predicted gene, 46601 ncRNA 12962 Mm.378899 NM_021352 ENSMUSG00000029352 Crybb3 AI852419 - 5 F|5 55.38 cM crystallin, beta B3 protein-coding 14744 Mm.378924 NM_008152 ENSMUSG00000021886 Gpr65 Dig1|Gpcr25|TDAG8 - 12|12 E G-protein coupled receptor 65 protein-coding 626659 Vmn1r-ps15 EG626659|Gm6694 - 6|6 B3 vomeronasal 1 receptor, pseudogene 15 pseudo 210583 XM_011243645 ENSMUSG00000094076 Gm4767 EG210583 - 10|10 C1 predicted gene 4767 protein-coding 100034836 Hypch Chol1/NZO - 5 67.67 cM hypercholesterolemia unknown 102632363 XR_375442 Gm30455 - - 2 H4|2 predicted gene, 30455 ncRNA 77080 Mm.159846 NM_029863 ENSMUSG00000047980 9230110F15Rik Pate-A|Pate5|mANLP3 - 9|9 A4 RIKEN cDNA 9230110F15 gene protein-coding 11731 Mm.377077 NM_007449 ENSMUSG00000047894 Ang2 Angrp|Raa3|Rnase5b - 14|14 C1 angiogenin, ribonuclease A family, member 2 protein-coding 100038454 Mm.365649 NR_033473 ENSMUSG00000063751 Platr8 Gm13939 - 2 E3|2 pluripotency associated transcript 8 ncRNA 102635354 XR_001782191 Gm32715 - - 17 D|17 predicted gene, 32715 ncRNA 109280087 LOC109280087 Mm782 - - VISTA enhancer mm782 biological-region 77436 9530001N24Rik - - 4|4 RIKEN cDNA 9530001N24 gene protein-coding 74189 Mm.44413 NM_028806 ENSMUSG00000027525 Phactr3 1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224 - 2|2 H4 phosphatase and actin regulator 3 protein-coding 67425 Mm.360392 NM_026146 ENSMUSG00000006154 Eps8l1 2310051G19Rik|4632407K17Rik|AW060268|DRC3|EPS8R1 - 7|7 A1 EPS8-like 1 protein-coding 100036743 Fbtq5 - - - femoral bone trait QTL 5 unknown 347727 Klra28 Klra11b|Ly49u/i - - killer cell lectin-like receptor, subfamily A, member 28 protein-coding 102640597 Mm.412041 NR_136909 ENSMUSG00000101537 Gm29571 - - 10 A4|10 predicted gene 29571 ncRNA 258001 Olfr966-ps1 MOR171-38P - 9|9 A5.1 olfactory receptor 966, pseudogene 1 pseudo 19338 Mm.1664 NM_016858 ENSMUSG00000027739 Rab33b - - 3|3 C RAB33B, member RAS oncogene family protein-coding 21346 Mm.271711 NM_178598 ENSMUSG00000026547 Tagln2 2700094C18Rik|SM22beta|Sm22B|Sm22a - 1 H3|1 79.89 cM transgelin 2 protein-coding 668576 Gm9252 EG668576 - 7|7 B3 3-phosphoglycerate dehydrogenase pseudogene pseudo 170761 Mm.29872 NM_133226 ENSMUSG00000032105 Pdzd3 NaPi-Cap2|Pdzk2 - 9|9 A5.2 PDZ domain containing 3 protein-coding 672763 Mm.491046 NR_046046 ENSMUSG00000087362 Gm13710 - - 2|2 D predicted gene 13710 ncRNA 102637572 XM_006540474 Gm38499 - - 7 A3|7 predicted gene, 38499 protein-coding 105244894 XR_872746 Gm40422 - - 12 B3|12 predicted gene, 40422 ncRNA 19713 Mm.57199 NM_009050 ENSMUSG00000030110 Ret PTC|RET51|RET9|c-Ret - 6 F1|6 55.86 cM ret proto-oncogene protein-coding 100124642 NR_037252 ENSMUSG00000095198 Mir467a-3 Mirn467a-3|mmu-mir-467a-3 - 2 A1|2 microRNA 467a-3 ncRNA 102467261 n-TDgtc3 n-Td3 - 1 H3|1 nuclear encoded tRNA aspartic acid 3 (anticodon GTC) tRNA 21927 Mm.386774 NM_009395 ENSMUSG00000017615 Tnfaip1 Bacurd2|Edp-1|Edp1|Tnfip1 - 11 B5|11 46.74 cM tumor necrosis factor, alpha-induced protein 1 (endothelial) protein-coding 102639008 XR_380298 Gm35430 - - 10 B2|10 predicted gene, 35430 ncRNA 57354 Mm.328854 NM_020608 ENSMUSG00000038002 Cramp1l 5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426 - 17|17 A3.3 cramped chromatin regulator homolog 1 protein-coding 666700 Gm11804 - - 4|4 A1 predicted gene 11804 pseudo 113855 Mm.377152 NM_053228 ENSMUSG00000096051 Vmn1r40 V1rb7 - 6|6 D1 vomeronasal 1 receptor 40 protein-coding 68507 Mm.295105 NM_001144855 ENSMUSG00000026458 Ppfia4 100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812 - 1|1 E4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 protein-coding 100417917 Gm15367 - - X|X A7.3 acyl-Coenzyme A binding domain containing 5 pseudogene pseudo 595140 Gm6044 EG595140|Ppia-ps22 - 5|5 C3.1 peptidylprolyl isomerase A pseudogene 22 pseudo 18420 Mm.42051 NM_011021 ENSMUSG00000021685 Otp - - 13 D1|13 49.22 cM orthopedia homeobox protein-coding 18559 Mm.5062 NM_008796 ENSMUSG00000020553 Pctp PC-TP|StarD2 - 11 C|11 54.7 cM phosphatidylcholine transfer protein protein-coding 19518 Rb(2.8)2Lub Rb2Lub - - Robertsonian translocation, Chr 2 and 8, Lubeck 2 other 26941 Mm.27842 NM_012030 ENSMUSG00000020733 Slc9a3r1 EBP-50|NHE-RF|NHERF-1|NHERF1 - 11|11 E2 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1 protein-coding 69745 Mm.32518 NM_027196 ENSMUSG00000024854 Pold4 2410012M21Rik|AI463381|AW060307|Polds|p12 - 19|19 A polymerase (DNA-directed), delta 4 protein-coding 61210 D1Mit172 - - 1 19.74 cM DNA segment, Chr 1, Massachusetts Institute of Technology 172 unknown 68732 Mm.211047 NM_026825 ENSMUSG00000021338 Carmil1 1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a - 13|13 A3.1 capping protein regulator and myosin 1 linker 1 protein-coding 105242805 XR_869522 Gm38915 - - 6 G1|6 predicted gene, 38915 ncRNA 624341 Mm.491055 NM_001164601 Olfr856-ps1 EG624341|Gm6495|MOR0-7P - 9|9 A3 olfactory receptor 856, pseudogene 1 pseudo 27915 D16Ium50 - - 16 38.88 cM DNA segment, Chr 16, Indiana University Medical 50 unknown 56395 Mm.260153 NM_019704 ENSMUSG00000010045 Tmem115 C78915|Pl6|Pp6 - 9|9 F1 transmembrane protein 115 protein-coding 217674 Mm.252250 NM_175644 ENSMUSG00000048982 Gphb5 OGH|Zlut1 - 12|12 C3 glycoprotein hormone beta 5 protein-coding 102633134 Gm31038 - - 6|6 predicted gene, 31038 ncRNA 12519 Mm.89474 NM_009855 ENSMUSG00000075122 Cd80 B71|Cd28l|Ly-53|Ly53|MIC17|TSA1 - 16 B4|16 26.86 cM CD80 antigen protein-coding 61073 D2Mit316 - - 2 11.52 cM DNA segment, Chr 2, Massachusetts Institute of Technology 316 unknown 12298 Mm.330223 NM_146123 ENSMUSG00000017412 Cacnb4 3110038O15Rik|Cchb4|lh - 2 C1.1|2 29.98 cM calcium channel, voltage-dependent, beta 4 subunit protein-coding 100039724 Fkbp1a-ps3 Gm16509 - 16|16 C3.3 FK506 binding protein 1a, pseudogene 3 pseudo 100503594 Mm.243855 XR_376078 4930534D22Rik - - 3|3 G3 RIKEN cDNA 4930534D22 gene ncRNA 71066 Mm.152656 NM_027661 ENSMUSG00000045336 Hsfy2 4933413G11Rik|Hspy2l - 1|1 C1.3 heat shock transcription factor, Y-linked 2 protein-coding 66922 Mm.276572 NM_025846 ENSMUSG00000055723 Rras2 2610016H24Rik|C86394|TC21 - 7|7 F1 related RAS viral (r-ras) oncogene 2 protein-coding 56608 D6Mgc2 - - - DNA segment, Chr 6, MRC UK Mouse Genome Centre 2 unknown 75986 Mm.30032 NM_001081408 ENSMUSG00000040706 Agmat 5033405N08Rik - 4|4 E1 agmatine ureohydrolase (agmatinase) protein-coding 75252 Mm.401989 NR_131010 ENSMUSG00000113329 4930555G21Rik - - 13|13 B1 RIKEN cDNA 4930555G21 gene ncRNA 102634072 Mm.319499 XM_006504241 Gm38457 - - 5 C3.1|5 predicted gene, 38457 protein-coding 102637913 XR_871501 Gm34607 - - 10 A3|10 predicted gene, 34607 ncRNA 171199 Mm.377177 NM_134181 ENSMUSG00000091382 Vmn1r18 V1rc26 - 6|6 B3 vomeronasal 1 receptor 18 protein-coding 102633209 XR_375763 Gm31096 - - 3 F1|3 predicted gene, 31096 ncRNA 258013 Olfr925-ps1 MOR171-36P - 9|9 A5.1 olfactory receptor 925, pseudogene 1 pseudo 102632587 Gm30625 - - 12|12 predicted gene, 30625 ncRNA 27577 D5Buc16 5F3.T7 - 5 37.65 cM DNA segment, Chr 5, Bucan 16 unknown 100035064 W6q7 - - - weight 6 weeks QTL 7 unknown 110496 Tcra-V3.1 - - - T cell receptor alpha, variable 3.1 other 223665 Mm.291713 NM_145472 ENSMUSG00000116138 C030006K11Rik 1110033I13Rik - 15|15 D3 RIKEN cDNA C030006K11 gene protein-coding 100303733 Mm.471680 Gm10501 - - 17|17 predicted gene 10501 unknown 74116 Mm.30950 NM_023734 ENSMUSG00000024011 Pi16 1200009H11Rik|Cripi|PI-16 - 17|17 A3.3 peptidase inhibitor 16 protein-coding 258067 Mm.453831 NM_001011820 ENSMUSG00000108674 Olfr1359 MOR256-35|MOR256-60 - 13|13 A3.1 olfactory receptor 1359 protein-coding 102638735 XR_385499 ENSMUSG00000087387 Gm15420 - - 17 A3.3|17 14.59 cM predicted gene 15420 ncRNA 93730 Mm.378263 NM_033322 ENSMUSG00000025245 Lztfl1 5530402H04Rik|6130400H19Rik|AI414725|AW048545 - 9 F4|9 74.36 cM leucine zipper transcription factor-like 1 protein-coding 67758 Mm.24547 NM_023383 ENSMUSG00000027761 Aadac 5033417E09Rik|AI265437|Aada - 3|3 D arylacetamide deacetylase protein-coding 102638288 Mm.403117 Gm34888 - - 9|9 predicted gene, 34888 ncRNA 328365 Mm.227484 NM_183208 ENSMUSG00000007817 Zmiz1 BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10 - 14|14 A3 zinc finger, MIZ-type containing 1 protein-coding 62631 D14Mit118 - - 14 60.09 cM DNA segment, Chr 14, Massachusetts Institute of Technology 118 unknown 61279 D2Mit255 - - 2 60.69 cM DNA segment, Chr 2, Massachusetts Institute of Technology 255 unknown 192193 Mm.21596 NM_138677 ENSMUSG00000030104 Edem1 A130059K23Rik|EDEM|mKIAA0212 - 6|6 E2 ER degradation enhancer, mannosidase alpha-like 1 protein-coding 110120558 LOC110120558 - - - VISTA enhancer mm1109 biological-region 74328 Mm.439150 NR_073363 ENSMUSG00000115294 1700047E10Rik - - 14 C1|14 RIKEN cDNA 1700047E10 gene ncRNA 111250 H2-M10-ps3 7.2H - - histocompatibility 2, M region locus, pseudogene 3 pseudo 17870 Mm.368515 NM_010850 ENSMUSG00000044597 Mycs - - X A1.1|X 2.4 cM myc-like oncogene, s-myc protein protein-coding 74478 Mm.325831 NM_028964 ENSMUSG00000071669 Snx29 4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a - 16|16 A1 sorting nexin 29 protein-coding 21144 T(2;6)7Ca T7Ca - - reciprocal translocation, Chr 2 and 6, Carter 7 other 102633821 Gm31553 - - 9|9 predicted gene, 31553 ncRNA 100035574 Apsic2 - - - apomorphine stress induced climbing 2 unknown 22378 Mm.284792 NM_016852 ENSMUSG00000034341 Wbp2 - - 11|11 E2 WW domain binding protein 2 protein-coding 93700 Mm.247203 NM_033575 ENSMUSG00000102748 Pcdhgb2 - - 18|18 B3 protocadherin gamma subfamily B, 2 protein-coding 68525 Mm.25506 NM_145920 ENSMUSG00000050248 Evc2 1110017L09Rik|Lbn|limbin - 5|5 B3 EvC ciliary complex subunit 2 protein-coding 102633716 XR_375123 Gm31475 - - 2 G3|2 predicted gene, 31475 ncRNA 62333 D6Mit255 - - 6 59.17 cM DNA segment, Chr 6, Massachusetts Institute of Technology 255 unknown 102636159 XR_881532 Gm33304 - - 4 D3|4 predicted gene, 33304 ncRNA 61706 D5Mit324 - - 5 72.14 cM DNA segment, Chr 5, Massachusetts Institute of Technology 324 unknown 105245762 XR_874654 Gm41161 - - 14 C3|14 predicted gene, 41161 ncRNA 258692 Mm.223127 NM_146697 ENSMUSG00000044441 Olfr1442 MOR202-9 - 19|19 A olfactory receptor 1442 protein-coding 105243936 XR_865457 Gm38388 - - 1 C2|1 predicted gene, 38388 ncRNA 233221 Mm.389895 NM_153095 ENSMUSG00000050650 Mrgpra1 MrgA1 - 7|7 B3 MAS-related GPR, member A1 protein-coding 72268 Mm.420740 NR_131162 1700027F06Rik - - 6|6 F2 RIKEN cDNA 1700027F06 gene ncRNA 328440 Mm.347749 NM_181345 ENSMUSG00000047911 Npm2 - - 14|14 D2 nucleophosmin/nucleoplasmin 2 protein-coding 116623 Bits4 - - 19 13.82 cM bitterness sensitivity 4 unknown 60943 DXMit39 - - X 49.47 cM DNA segment, Chr X, Massachusetts Institute of Technology 39 unknown 100418195 Gm19068 - - 3|3 F1 proteasome (prosome, macropain) subunit, alpha type 1 pseudogene pseudo 105247166 Gm42314 - - 4|4 predicted gene, 42314 protein-coding 84543 Mm.138766 NM_032542 ENSMUSG00000014104 Sval2 SLP-M - 6|6 B2.1 seminal vesicle antigen-like 2 protein-coding 100504617 Mm.253564 NM_011501 Strm Strn2 - 12|12 C3 striamin unknown 547428 Mm.318988 Trav19 Gm13893|MVA5T - 14 C2|14 T cell receptor alpha variable 19 other 102631952 LOC102631952 - - 13 A1 ubiquitin-40S ribosomal protein S27a pseudogene pseudo 75199 Mm.391240 NM_029203 ENSMUSG00000051827 Rhox2a 4930539I12Rik|Rhox2|Rhox2.1 - X|X A3.3 reproductive homeobox 2A protein-coding 13283 Del(14)39H Del39H - - deletion, Chr 14, Harwell 39 other 258606 Mm.377588 NM_146613 ENSMUSG00000095390 Olfr229 MOR171-14|Olfr229-ps1|Olfr973|Olfr973-ps1 - 9|9 A5.1 olfactory receptor 229 protein-coding 105244493 XR_867448 Gm40090 - - 3 F1|3 predicted gene, 40090 ncRNA 100038547 Mm.482513 Gm10815 - - 19 A-B|19 predicted gene 10815 unknown 102633849 XR_001781175 Gm31577 - - 14 A2|14 predicted gene, 31577 ncRNA 105245184 XR_871745 Gm40672 - - 10 B4|10 predicted gene, 40672 ncRNA 245638 Mm.275869 NM_001081499 ENSMUSG00000042473 Tbc1d8b 4921505D17Rik|9030605E16Rik - X|X F1 TBC1 domain family, member 8B protein-coding 320230 Mm.428204 NM_177110 C130023O10Rik - - 2|2 E3 RIKEN cDNA C130023O10 gene unknown 15160 Mm.6609 NM_008223 ENSMUSG00000022766 Serpind1 AA985900|AI303446|HC-II|HCII|Hcf2 - 16 A3|16 10.74 cM serine (or cysteine) peptidase inhibitor, clade D, member 1 protein-coding 78136 Mm.399065 NR_046187 4922502H24Rik - - 13|13 D1 RIKEN cDNA 4922502H24 gene ncRNA 14270 Mm.276259 NM_019520 ENSMUSG00000026425 Srgap2 9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3 - 1|1 E4 SLIT-ROBO Rho GTPase activating protein 2 protein-coding 100861605 Gm21070 - - 9 A1|9 predicted gene, 21070 pseudo 102637851 XR_382407 Gm34557 - - 13 B1|13 predicted gene, 34557 ncRNA 105245646 XR_873985 Gm41074 - - 13 D2.2|13 predicted gene, 41074 ncRNA 666869 Gm8337 EG666869 - 1|1 C1.1 heat shock protein 8 pseudogene pseudo 71991 Mm.212208 NM_028042 ENSMUSG00000021694 Ercc8 2410022P04Rik|2810431L23Rik|4631412O06Rik|B130065P18Rik|Ckn1|Csa - 13|13 D2.1 excision repaiross-complementing rodent repair deficiency, complementation group 8 protein-coding 100417882 Gm18877 - - 7|7 A3 chromobox homolog 3 pseudogene pseudo 74266 1700039M15Rik - - 9|9 RIKEN cDNA 1700039M15 gene protein-coding 108167893 XR_001780175 Gm46275 - - 11 A4|11 predicted gene, 46275 ncRNA 22719 Mm.12832 NM_009561 ENSMUSG00000050605 Zfp61 - - 7 A3|7 10.27 cM zinc finger protein 61 protein-coding 20401 Mm.4462 NM_009164 ENSMUSG00000022436 Sh3bp1 3BP-1 - 15|15 E1 SH3-domain binding protein 1 protein-coding 105245892 XR_875046 Gm41273 - - 15 A1|15 predicted gene, 41273 ncRNA 100302600 NR_028281 Snord43 MBII-47 - 15|15 E1 small nucleolar RNA, C/D box 43 snoRNA 493041 Cfbw3 - - 7 63.78 cM cystic fibrosis body weight 3 unknown 100038743 Mm.330264 NR_033495 Gm13629 - - 2 C1.3|2 predicted gene 13629 ncRNA 668222 Mm.29475 Gm9052 EG668222 - 3|3 F2.1 predicted gene 9052 unknown 108168685 XM_017318918 ENSMUSG00000091585 LOC108168685 - - - PRAME family member 8-like protein-coding 100504296 Gm20156 - - 5 B3|5 22.76 cM ribosome biogenesis protein WDR12-like pseudo 723826 NR_029783 ENSMUSG00000065594 Mir107 Mirn107|mir-107|mmu-mir-107 - 19|19 C1 microRNA 107 ncRNA 57423 Mm.133551 NM_020582 ENSMUSG00000038690 Atp5j2 1110019H14Rik - 5|5 G2 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 protein-coding 68241 Mm.328870 NM_026633 ENSMUSG00000025732 Mcrip2 9530058B02Rik|Fam195a - 17|17 A3.3 MAPK regulated corepressor interacting protein 2 protein-coding 446215 Nanog-ps1 nanogPa - X|X C1 Nanog pseudogene 1 pseudo 100036130 Vmmt10 - - - vertebral morphology and mechanical traits 10 unknown 12308 Mm.2755 NM_007586 ENSMUSG00000003657 Calb2 CR - 8|8 D3 calbindin 2 protein-coding 105244439 Gm40046 - - 3|3 predicted gene, 40046 ncRNA 18722 Mm.458769 NM_011087 ENSMUSG00000081665 Pira1 6M21|Ly89|PIR-A1|Pir - 7 A1|7 2.15 cM paired-Ig-like receptor A1 protein-coding 258245 Mm.377389 NM_207142 ENSMUSG00000099820 Olfr1036 GA_x5J8B7TTB99-482-964|MOR245-25|MOR262-13 - 2|2 D olfactory receptor 1036 protein-coding 69279 Mm.417857 NR_045475 ENSMUSG00000099419 1700001D01Rik - - 8|8 B3.1 RIKEN cDNA 1700001D01 gene ncRNA 18797 Mm.273204 NM_008874 ENSMUSG00000024960 Plcb3 mKIAA4098 - 19 A|19 5.1 cM phospholipase C, beta 3 protein-coding 102634186 Gm28908 - - Y|Y predicted gene 28908 ncRNA 105245325 XR_872171 Gm40800 - - 10 D3|10 predicted gene, 40800 ncRNA 108167349 Gm44156 - - 6 G2|6 predicted gene, 44156 pseudo 22226 Mm.377116 NM_021290 ENSMUSG00000038676 Ucn Mpv17|Ucn1 - 5 B1|5 17.11 cM urocortin protein-coding 107488 Tel1q - - - telomeric sequence, Chr 1, q arm protein-coding 56726 Mm.260760 NM_019989 ENSMUSG00000031246 Sh3bgrl 1190008F14Rik - X|X D SH3-binding domain glutamic acid-rich protein like protein-coding 246106 Aggr1 - - - aggression 1 unknown 17846 Mm.259903 NM_144514 ENSMUSG00000051355 Commd1 AI256843|Murr1|U2/Mu - 11 A3.2|11 14.22 cM COMM domain containing 1 protein-coding 102634481 XR_385910 9330159H11Rik - - 17|17 E5 RIKEN cDNA 9330159H11 gene ncRNA 11472 Mm.37638 NM_033268 ENSMUSG00000052374 Actn2 1110008F24Rik - 13 A1|13 4.54 cM actinin alpha 2 protein-coding 102635116 Gm32536 - - 6|6 predicted gene, 32536 pseudo 380889 LOC380889 - - 14|14 A3 axonemal dynein heavy chain family member protein-coding 101056106 LOC101056106 - - 4 A1 ubiquitin-conjugating enzyme E2 variant 2 pseudogene pseudo 213988 Mm.131328 NM_144812 ENSMUSG00000047888 Tnrc6b 2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik - 15|15 E1 trinucleotide repeat containing 6b protein-coding 77096 5730585A16Rik - - 15|15 RIKEN cDNA 5730585A16 gene protein-coding 100504317 Gm20167 - - 14|14 63.81 cM predicted gene, 20167 pseudo 257947 Mm.376117 NM_001011782 ENSMUSG00000044814 Olfr543 MOR42-2 - 7|7 E3 olfactory receptor 543 protein-coding 73005 Mm.398041 2900072G11Rik - - 2|2 RIKEN cDNA 2900072G11 gene protein-coding 67145 Mm.23173 NM_025996 ENSMUSG00000018322 Tomm34 2610100K07Rik|TOM34 - 2|2 H3 translocase of outer mitochondrial membrane 34 protein-coding 100608 Mm.29960 NM_153570 ENSMUSG00000033294 Noc4l AI326906 - 5|5 F NOC4 like protein-coding 382139 Mm.335162 NR_045333 ENSMUSG00000111020 Gm1715 - - 9|9 A5.3 predicted gene 1715 ncRNA 13537 Mm.4729 NM_010090 ENSMUSG00000027368 Dusp2 PAC1 - 2|2 F1 dual specificity phosphatase 2 protein-coding 102639153 XR_380751 ENSMUSG00000112831 Gm35533 - - 10 D1|10 predicted gene, 35533 ncRNA 11994 Mm.338933 NM_023115 ENSMUSG00000052613 Pcdh15 BB078305|Gm9815|Ush1f|av|nmf19|roda - 10 B5.3|10 37.43 cM protocadherin 15 protein-coding 102631571 XR_373196 Gm29874 - - 1 A1|1 predicted gene, 29874 ncRNA 53757 D17Boy1 B144|D17Slk1 - - DNA segment, Chr 17, Boyse 1 unknown 100036283 W10q4 - - - weight 10 weeks QTL 4 unknown 100504606 Gm17693 - - X|X 49.81 cM predicted gene, 17693 protein-coding 66107 Mm.902 NM_183249 ENSMUSG00000051748 Wfdc21 1100001G20Rik|Wdnm1-like - 11|11 C WAP four-disulfide core domain 21 protein-coding 100034816 Lgth7 - - - body length 7 unknown 213332 Mm.484359 NR_033628 Mfsd4b4 AA474331 - 10 B1|10 major facilitator superfamily domain containing 4B4 pseudo 105243166 XR_870327 Gm39160 - - 8 A4|8 predicted gene, 39160 ncRNA 100502739 Gm17509 - - 13|13 predicted gene, 17509 unknown 258613 Mm.271466 NM_146620 ENSMUSG00000060688 Olfr292 MOR220-2 - 7|7 D3 olfactory receptor 292 protein-coding 108797 Mm.306789 NM_175366 ENSMUSG00000057706 Mex3b 4931439A04Rik|M-04814|Rkhd3|mKIAA2009 - 7 D3|7 47.35 cM mex3 RNA binding family member B protein-coding 102635152 XR_378412 Gm32563 - - 7 E3|7 predicted gene, 32563 ncRNA 100036250 Hcif1 Hcf1 - 17 17.98 cM hepatocarcinogenesis in females 1 unknown 61184 D19Mit51 - - 19 6.34 cM DNA segment, Chr 19, Massachusetts Institute of Technology 51 unknown 54633 Mm.14616 NM_019478 ENSMUSG00000031157 Pqbp1 PQBP-1|Sfc2|npw38 - X A1.1|X 3.56 cM polyglutamine binding protein 1 protein-coding 105242546 XR_868648 Gm38728 - - 5 G2|5 predicted gene, 38728 ncRNA 667529 Gm8686 EG667529 - 6|6 A1 polymerase (RNA) I polypeptide D pseudogene pseudo 111355 Mmv22 Mmv-22 - - MCF endogenous virus 22 other 106780810 Obox4-ps4 - - 7 A1|7 oocyte specific homeobox 4, pseudogene 4 pseudo 320746 5330437M03Rik - - 6|6 RIKEN cDNA 5330437M03 gene protein-coding 665374 Mm.387249 NR_152172 ENSMUSG00000111085 Gm7607 EG665374 - 9|9 A2 predicted gene 7607 ncRNA 102634860 XR_375987 Gm32344 - - 3 G1|3 predicted gene, 32344 ncRNA 109280090 LOC109280090 Mm815 - - VISTA enhancer mm815 biological-region 110441 Cora1 - - 5 71.21 cM correlation in cytokine production 1 protein-coding 245684 Mm.197074 NM_177751 ENSMUSG00000025658 Cnksr2 Cnk2|Ksr2 - X|X F4 connector enhancer of kinase suppressor of Ras 2 protein-coding 319177 Mm.377879 NM_175663 ENSMUSG00000050799 Hist1h2ba Th2b - 13|13 A3.1 histone cluster 1, H2ba protein-coding 102632154 Mm.451382 XR_387636 Gm26995 - - 5 F|5 predicted gene, 26995 ncRNA 102634611 XR_381645 Gm32151 - - 12 C2|12 predicted gene, 32151 protein-coding 108169049 XR_001784873 LOC108169049 - - 5 C3.2 uncharacterized LOC108169049 ncRNA 100040242 Gm11531 - - 11|11 D ribosomal protein L17 pseudogene pseudo 66868 Mm.491153 NM_025813 ENSMUSG00000027775 Mfsd1 1200003O06Rik - 3|3 E1 major facilitator superfamily domain containing 1 protein-coding 434117 Mm.247383 NM_001105178 ENSMUSG00000094606 Vmn2r50 EG434117 - 7|7 A1 vomeronasal 2, receptor 50 protein-coding 100043534 Gm11686 - - 2|2 G1 predicted gene 11686 protein-coding 192170 Mm.197555 NM_138669 ENSMUSG00000025580 Eif4a3 2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111 - 11|11 E2 eukaryotic translation initiation factor 4A3 protein-coding 639510 Ighv6-5 EG639510|Gm7268 - 12|12 F2 immunoglobulin heavy variable V6-5 other 238257 Mm.251196 NM_178715 ENSMUSG00000034435 Tmem30b 9130011B11Rik - 12|12 C3 transmembrane protein 30B protein-coding 171167 Mm.334477 NM_134161 ENSMUSG00000046152 Fut10 fuc-TX|fut10A - 8|8 A3 fucosyltransferase 10 protein-coding 100040470 Gm2791 - - 14|14 B protein tyrosine phosphatase 4a1 pseudogene pseudo 383559 Gm5261 EG383559 - 1|1 E3 ribosomal protein S2 pseudogene pseudo 68229 Mm.34766 NM_001033139 ENSMUSG00000024970 Spindoc 1700105P06Rik|AI846148|SPIN-DOC - 19|19 A spindlin interactor and repressor of chromatin binding protein-coding 18846 Mm.1685 NM_008883 ENSMUSG00000031398 Plxna3 PlexA3|Plxa3|Plxn3|Plxn4|SEX|mKIAA4078 - X A7.3|X 38.0 cM plexin A3 protein-coding 24069 Mm.41210 NM_015752 ENSMUSG00000025231 Sufu Su(fu) - 19 C3|19 38.85 cM SUFU negative regulator of hedgehog signaling protein-coding 102639015 Gm35435 - - 18|18 predicted gene, 35435 pseudo 330361 Mm.474487 NM_177884 ENSMUSG00000035125 Gcfc2 A130099G21|AW146020|GCF2|Tcf9 - 6|6 C3 GC-rich sequence DNA binding factor 2 protein-coding 100456 AW743107 - - - expressed sequence AW743107 unknown 330627 Mm.183528 NM_181853 ENSMUSG00000031026 Trim66 Kiaa0298-hp|Tif1d - 7 E3|7 57.21 cM tripartite motif-containing 66 protein-coding 240832 Mm.253335 NM_022329 ENSMUSG00000050565 Tor1aip2 1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1 - 1|1 G3 torsin A interacting protein 2 protein-coding 105246424 XR_877369 Gm41714 - - 18 B3|18 predicted gene, 41714 ncRNA 68066 Mm.44226 NM_026542 ENSMUSG00000018677 Slc25a39 3010027G13Rik|D11Ertd333e - 11 D|11 66.29 cM solute carrier family 25, member 39 protein-coding 75525 Mm.56419 1700024K11Rik - - 9|9 RIKEN cDNA 1700024K11 gene protein-coding 75472 Mm.32760 NM_029301 ENSMUSG00000026649 Cfap126 1700009P17Rik|AV282292|Flattop|Fltp - 1|1 H3 cilia and flagella associated protein 126 protein-coding 105246972 XR_001784933 Gm42161 Gm43095 - 5 F|5 predicted gene, 42161 ncRNA 102634159 XR_373285 Gm28644 - - 1 B|1 predicted gene 28644 ncRNA 228642 Mm.198389 NM_177654 Paral1 A530021K05 - 2|2 F3 PPARG activating RBM14 associated lncRNA 1 unknown 170789 Mm.277878 NM_133240 ENSMUSG00000017307 Acot8 PTE-2|Pte1 - 2|2 H3 acyl-CoA thioesterase 8 protein-coding 102639769 Mm.364713 XR_385038 Gm36001 - - 16 C3.3|16 predicted gene, 36001 ncRNA 231869 Gm4870 - - 5 G2|5 cyclin B1 pseudogene pseudo 106840 Mm.29241 NM_175352 ENSMUSG00000046562 Unc119b AA407659|AI414892 - 5|5 F unc-119 lipid binding chaperone B protein-coding 27830 D0Bac4 - - - DNA segment, Bulgarian Academy of Science 4 unknown 100035421 Msts1 - - - modifier of Salmonella typhimurium susceptibility 1 unknown 233073 Mm.34790 NM_170760 ENSMUSG00000078765 U2af1l4 AA407033|AF419339|AI451269|AW553050|U2af26 - 7|7 B1 U2 small nuclear RNA auxiliary factor 1-like 4 protein-coding 668438 Ighv3-3 EG668438|Gm9170 - 12|12 F1 immunoglobulin heavy variable V3-3 other 332221 Mm.270315 NM_001033425 ENSMUSG00000023902 Zscan10 BC068284|Zfp206|Zkscan10|Znf206 - 17|17 A3.3 zinc finger and SCAN domain containing 10 protein-coding 735287 NR_030475 ENSMUSG00000076216 Mir695 Mirn695|mmu-mir-695 - 2 H1|2 microRNA 695 ncRNA 102640801 XR_376850 Gm36783 - - 5 B1|5 predicted gene, 36783 ncRNA 140917 Mm.374850 NM_133865 ENSMUSG00000027845 Dclre1b AI452214|Apollo|SNMIB|mSNM1B - 3|3 F2.2 DNA cross-link repair 1B protein-coding 68365 Mm.198264 NM_026697 ENSMUSG00000026878 Rab14 0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik - 2|2 B RAB14, member RAS oncogene family protein-coding 102634987 XR_386107 Gm32436 - - 18 A2|18 predicted gene, 32436 protein-coding 320474 Mm.136840 XR_104759 E030042O20Rik - - 2|2 C3 RIKEN cDNA E030042O20 gene unknown 665348 Gm7595 EG665348 - 15|15 D1 fibrillarin pseudogene pseudo 404710 Mm.331133 NM_001033484 ENSMUSG00000028068 Iqgap3 AI593484|D030034H08 - 3 F1|3 38.78 cM IQ motif containing GTPase activating protein 3 protein-coding 98415 Mm.246869 NM_175294 ENSMUSG00000026434 Nucks1 2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks - 1|1 E4 nuclear casein kinase and cyclin-dependent kinase substrate 1 protein-coding 74891 4930439G18Rik - - - RIKEN cDNA 4930439G18 gene protein-coding 57295 Mm.277464 NM_133788 ENSMUSG00000039662 Icmt 1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT - 4|4 E2 isoprenylcysteine carboxyl methyltransferase protein-coding 243621 Mm.299442 NM_001033354 ENSMUSG00000040797 Iqsec3 AK122446|BRAG3|mKIAA1110|synarfGEF - 6|6 F1 IQ motif and Sec7 domain 3 protein-coding 266690 Mm.30166 NM_024195 ENSMUSG00000032872 Cyb5r4 2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r - 9|9 E3.1 cytochrome b5 reductase 4 protein-coding 108167797 XR_001779729 Gm46214 - - 10 A3|10 predicted gene, 46214 ncRNA 108168690 XR_001782957 LOC108168690 - - - uncharacterized LOC108168690 ncRNA 51832 D3Ggc1e - - - DNA segment, Chr 3, G. Consalez 1, expressed unknown 102634064 XR_391642 Gm31740 - - 7 D2|7 predicted gene, 31740 ncRNA 78304 Mm.45683 NM_030083 ENSMUSG00000059278 Naa38 1500034E06Rik|Lsmd1 - 11 B3|11 N(alpha)-acetyltransferase 38, NatC auxiliary subunit protein-coding 100035112 Eae38 - - - experimental allergic encephalomyelitis susceptibility 38 unknown 545913 Mm.380086 NM_001100186 ENSMUSG00000090714 Zscan4d EG545913 - 7|7 A1 zinc finger and SCAN domain containing 4D protein-coding 100039560 Gm2310 - - 15 A1|15 predicted gene 2310 protein-coding 102633491 XR_375768 Gm31304 - - 3 F1|3 predicted gene, 31304 ncRNA 100504239 Mm.407493 NM_001193668 ENSMUSG00000096596 Gm10591 - - 4|4 A5 predicted gene 10591 protein-coding 102639268 Mm.319998 NR_131932 Gm13830 - - 5 F|5 56.04 cM predicted gene 13830 ncRNA 52538 Mm.245724 NM_177470 ENSMUSG00000036880 Acaa2 0610011L04Rik|AI255831|AI265397|D18Ertd240e - 18 E2|18 50.76 cM acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase) protein-coding 631323 Mm.394103 NM_001135115 Gm12250 Irgb10 - 11|11 B1.3 predicted gene 12250 protein-coding 76229 Mm.387947 NM_001113468 ENSMUSG00000095730 Vmn2r29 6430701C03Rik - 7|7 A1 vomeronasal 2, receptor 29 protein-coding 102634685 XR_386818 Gm17197 - - 19 D2|19 51.82 cM predicted gene 17197 ncRNA 105242997 XR_869800 Gm39049 - - 7 E1|7 predicted gene, 39049 ncRNA 14003 Etohi5 - - - ethanol induced 5 protein-coding 102640221 XR_375737 Gm36341 - - 3 E3|3 predicted gene, 36341 ncRNA 76090 5830454J16Rik - - 17|17 RIKEN cDNA 5830454J16 gene protein-coding 106935 AI664001 - - - expressed sequence AI664001 unknown 233056 Mm.224766 NM_146185 ENSMUSG00000011427 Zfp790 6330581L23Rik - 7|7 B1 zinc finger protein 790 protein-coding 105246315 Gm41617 - - 17|17 predicted gene, 41617 ncRNA 100035054 W10q7 - - - weight 10 weeks QTL 7 unknown 102637865 Mm.405941 XR_385410 Gm34567 - - 17 A2|17 predicted gene, 34567 ncRNA 100534391 LOC100534391 - - 1|1 C3 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene pseudo 100417193 Gm15022 - - X|X F1 crumbs homolog 1 pseudogene pseudo 545204 XM_619462 Stk-ps1 Gm318|Gm858 - 17|17 B1 serine/threonine kinase, pseudogene 1 protein-coding 100502945 Mm.376937 NR_040349 Gm19466 - - 18 D1|18 29.07 cM predicted gene, 19466 ncRNA 108292 Atp5k-ps4 Atp5k-rs1 - 2 C1.1|2 ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 4 pseudo 100124443 NR_130320 ENSMUSG00000104561 Mir466c-1 Mir466c|Mirn466c|Mirn466c-1|mmu-mir-466c|mmu-mir-466c-1 - 2 A1|2 microRNA 466c-1 ncRNA 105243437 XR_870867 Gm39362 - - 9 C|9 predicted gene, 39362 ncRNA 329711 Mm.404063 XR_867461 Gm38411 A430090J22|Gm43306 - 3|3 F2.1 predicted gene, 38411 unknown 210503 Mm.33443 NM_172486 ENSMUSG00000062743 Zfp677 A830058L05Rik|Tce8 - 17|17 A3.2 zinc finger protein 677 protein-coding 100504644 Gm20327 - - 12|12 8.39 cM predicted gene, 20327 pseudo 232679 Mm.29780 NM_172735 ENSMUSG00000039130 Zc3hc1 1110054L24Rik|AU018540|AU019789|HSPC216|Nipa - 6|6 A3.3 zinc finger, C3HC type 1 protein-coding 15143 Hc12 Cen12 - - heterochromatin, Chr 12 other 18987 Mm.76683 NM_011138 ENSMUSG00000008496 Pou2f2 Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2 - 7 A3|7 13.73 cM POU domain, class 2, transcription factor 2 protein-coding 666913 Gm13505 - - 2|2 C1.1 zinc finger, CCHC domain containing 9 pseudogene pseudo 114317 Taste9 - - - taste bitterness sensitivity 9 unknown 208146 Mm.390895 NM_001033237 ENSMUSG00000041215 Yeats2 BC042768|mKIAA1197 - 16|16 A3 YEATS domain containing 2 protein-coding 61752 D4Mit251 - - 4 69.05 cM DNA segment, Chr 4, Massachusetts Institute of Technology 251 unknown 100124397 Traj6 Gm16920 - 14|14 C2 T cell receptor alpha joining 6 other 77032 Mm.87238 NM_029840 ENSMUSG00000028251 Tstd3 2610029I01Rik - 4|4 A3 thiosulfate sulfurtransferase (rhodanese)-like domain containing 3 protein-coding 672284 NM_011320 ENSMUSG00000029112 Nkx1-1 Nkx-1.1|Sax2 - 5 B1|5 17.65 cM NK1 homeobox 1 protein-coding 74707 Mm.399276 4930521G14Rik - - 13|13 RIKEN cDNA 4930521G14 gene protein-coding 52668 Mm.2121 NM_026790 ENSMUSG00000064215 Ifi27 1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1 - 12 E|12 52.93 cM interferon, alpha-inducible protein 27 protein-coding 320038 Mm.94021 NR_015388 Dlx6os1 A230055N17Rik|Dlx6as1|Evf-1|Evf-2|Evf1|Evf1/2|Evf2|Shhrs - 6 A1|6 2.68 cM distal-less homeobox 6, opposite strand 1 ncRNA 258044 Olfr333-ps1 MOR284-1P - 11|11 B1.3 olfactory receptor 333, pseudogene 1 pseudo 53598 Mm.29025 NM_016890 ENSMUSG00000028447 Dctn3 p24 - 4|4 A5 dynactin 3 protein-coding 108767 Mm.27769 NM_001033225 ENSMUSG00000040128 Pnrc1 5730463C12Rik|B4-2|PRR2|Prol2 - 4|4 A5 proline-rich nuclear receptor coactivator 1 protein-coding 100041192 Gm3192 - - 17 A1|17 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3 pseudogene pseudo 269356 Mm.441391 NM_001081162 ENSMUSG00000074796 Slc4a11 AI503023|BTR1|NaBC1 - 2|2 F1 solute carrier family 4, sodium bicarbonate transporter-like, member 11 protein-coding 70335 Mm.28147 NM_139292 ENSMUSG00000035504 Reep6 0610011M24Rik|Dp1l1 - 10|10 C1 receptor accessory protein 6 protein-coding 20528 Mm.10661 NM_009204 ENSMUSG00000018566 Slc2a4 GT2|Glut-4|Glut4|twgy - 11 B3|11 42.93 cM solute carrier family 2 (facilitated glucose transporter), member 4 protein-coding 108167361 XR_882451 Gm45960 - - 4 E2|4 predicted gene, 45960 ncRNA 107995 Mm.261764 NM_023223 ENSMUSG00000006398 Cdc20 2310042N09Rik|C87100|p55CDC - 4|4 D2.1 cell division cycle 20 protein-coding 210554 Mm.450571 NM_153072 ENSMUSG00000076430 Hus1b - - 13|13 A3.2 HUS1 checkpoint clamp component B protein-coding 108168862 Gm37770 - - 3 A3|3 predicted gene, 37770 pseudo 97449 C78280 - - - expressed sequence C78280 protein-coding 101056102 XM_006535833 Gm29779 - - 5 A3|5 predicted gene, 29779 protein-coding 110501 Tcra-V1.5 - - - T cell receptor alpha, variable 1.5 other 108168796 XR_001783483 Gm14102 - - 2 F2|2 64.83 cM predicted gene 14102 ncRNA 234542 Mm.461701 NM_144929 ENSMUSG00000048617 Rtbdn A330096I21Rik|BC022744|Rtbnd - 8|8 C3 retbindin protein-coding 18187 Mm.266341 NM_010939 ENSMUSG00000025969 Nrp2 1110048P06Rik|Np-2|Np2|Npn-2|Npn2 - 1|1 C2 neuropilin 2 protein-coding 100038522 Mm.417270 NR_045884 ENSMUSG00000073242 Dnmt3aos Gm10485 - 12 A1.1|12 DNA methyltransferase 3A, opposite strand ncRNA 384873 Gm5358 EG384873|Gabarapl2-ps8_1688.1 - 8|8 E2 GABA(A) receptor-associated protein like 2 pseudogene 8_1688.1 pseudo 105590 Mm.486536 NM_001033215 ENSMUSG00000071262 Zfp957 AU017455 - 14|14 D3 zinc finger protein 957 protein-coding 102465258 NR_105853 ENSMUSG00000104740 Mir6516 mmu-mir-6516 - 11|11 E2 microRNA 6516 ncRNA 100035396 Imct1 - - - immune cell traits 1 unknown 258341 Mm.377442 NM_146344 ENSMUSG00000047207 Olfr1495 MOR266-9 - 19|19 A olfactory receptor 1495 protein-coding 329839 Mm.331582 NM_001033412 Gm829 - - 4|4 B1 predicted gene 829 protein-coding 64335 Mm.389393 NM_021363 ENSMUSG00000017003 Svs3a 9530026M05Rik|BB121242|Semg2|Svp-3|Svp3|Svs3 - 2 H3|2 85.07 cM seminal vesicle secretory protein 3A protein-coding 108169148 XR_001785272 Gm46961 - - 6 C1|6 predicted gene, 46961 ncRNA 258218 Mm.377381 NM_001011721 ENSMUSG00000091531 Olfr102 MOR250-4 - 17|17 B1 olfactory receptor 102 protein-coding 102638554 XR_389508 Gm35089 - - 5 F|5 predicted gene, 35089 ncRNA 234671 Mm.28191 NM_145603 ENSMUSG00000061825 Ces2c ACH M1|CES 2|Ces2|ces2A3 - 8|8 D3 carboxylesterase 2C protein-coding 74569 Mm.248504 NM_183106 ENSMUSG00000027194 Ttc17 9130020K17Rik|D2Bwg1005e - 2 E1|2 51.69 cM tetratricopeptide repeat domain 17 protein-coding 61117 D2Mit494 - - 2 77.26 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 494 unknown 544741 Gm5781 EG544741 - 10|10 D2 predicted gene 5781 pseudo 102633444 XR_381059 Gm31268 - - 11 A3.1|11 predicted gene, 31268 ncRNA 83702 Mm.196666 NM_030611 ENSMUSG00000021210 Akr1c6 3alpha-HSD|Akr1c1|Hsd17b5 - 13 A1|13 2.48 cM aldo-keto reductase family 1, member C6 protein-coding 114253 Many5 QTL-CS12.1|QTL-SU12.1 - - mandible asymmetry 5 unknown 109226 Mm.133826 A930002I21Rik - - 3|3 F2.3 RIKEN cDNA A930002I21 gene unknown 239839 Mm.272045 NM_172824 ENSMUSG00000022833 Ccdc14 G630039H03Rik - 16|16 B3 coiled-coil domain containing 14 protein-coding 99377 Mm.434054 NM_175303 ENSMUSG00000027547 Sall4 5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20 - 2 H3|2 88.99 cM spalt like transcription factor 4 protein-coding 100041241 Mm.445982 Gm3227 - - 18 A2|18 predicted gene 3227 unknown 108168075 Gm46408 - - 13 A3.3|13 predicted gene, 46408 pseudo 74303 Mm.444304 NR_108037 ENSMUSG00000097267 1700109K24Rik 4933425G21Rik - 15|15 D3 RIKEN cDNA 1700109K24 gene ncRNA 100035087 W3q7 - - - weight 3 weeks QTL 7 unknown 100418080 Gm18988 - - 7|7 C NSA2 ribosome biogenesis homolog pseudogene pseudo 67504 Mm.46159 NM_026205 ENSMUSG00000008482 Rnf151 1700010O16Rik|AV047371 - 17|17 A3.3 ring finger protein 151 protein-coding 102633562 XR_375675 Gm31358 - - 3 C|3 predicted gene, 31358 ncRNA 105246547 XR_877770 Gm41821 - - 19 B|19 predicted gene, 41821 ncRNA 27971 Mm.441342 D8Wsu26e - - 8 73.65 cM DNA segment, Chr 8, Wayne State University 26, expressed unknown 236010 Gm4899 EG236010 - 8|8 C2 coenzyme Q10 homolog B pseudogene pseudo 107146 Mm.39974 NM_145935 ENSMUSG00000063683 Glyat A330009E03Rik|ACGNAT|AI195249|AI315345|CAT|GAT - 19|19 A glycine-N-acyltransferase protein-coding 68667 Mm.439890 NM_175130 ENSMUSG00000038260 Trpm4 1110030C19Rik|AW047689|LTRPC4|LTrpC-4|TRPM4B - 7|7 B3 transient receptor potential cation channel, subfamily M, member 4 protein-coding 74571 Mm.105571 NM_029006 ENSMUSG00000023387 Kcnk16 4731413G05Rik|TALK-1|TALK1 - 14 A3|14 potassium channel, subfamily K, member 16 protein-coding 60926 D9Mit56 - - 9 69.26 cM DNA segment, Chr 9, Massachusetts Institute of Technology 56 unknown 105243420 XR_870794 Gm39347 - - 9 B|9 predicted gene, 39347 ncRNA 258428 Mm.377496 NM_146436 ENSMUSG00000111454 Olfr998 MOR175-5 - 2|2 D olfactory receptor 998 protein-coding 665194 Mm.491047 NR_046033 ENSMUSG00000107334 Gm7538 EG665194 - 5|5 F predicted gene 7538 ncRNA 100416869 Gm13379 - - 2|2 A3 high mobility group box 1 pseudogene pseudo 434028 Igkv1-99 Gm16800|cv1 - 6|6 C1 immunoglobulin kappa variable 1-99 other 667892 Gm12266 - - 11|11 B2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100042644 Gm12013 - - 11|11 A2 predicted gene 12013 pseudo 100417351 Gm18552 - - 1|1 E2.1 polo-like kinase 1 pseudogene pseudo 100035262 Mpvq2 - - - mean platelet volume locus 2 unknown 384724 Mm.466612 NM_001100184 ENSMUSG00000078787 Cyp2t4 Gm1448|Gm1450 - 7|7 A3 cytochrome P450, family 2, subfamily t, polypeptide 4 protein-coding 385521 Gm14571 EG385521 - X|X A3.3 predicted gene 14571 protein-coding 102225 AU019559 - - - expressed sequence AU019559 unknown 18641 Mm.269649 NM_008826 ENSMUSG00000020277 Pfkl AA407869|ATP-PFK|PFK-B|PFK-L - 10 C1|10 39.72 cM phosphofructokinase, liver, B-type protein-coding 492840 Cdcs7 - - 12 37.86 cM cytokine deficiency colitis susceptibility 7 unknown 100035234 Spnw5 - - - spleen weight 5 unknown 102635573 Gm32869 - - 4|4 predicted gene, 32869 ncRNA 20562 Mm.39155 NM_015748 ENSMUSG00000025020 Slit1 Slil1|mKIAA0813 - 19|19 C3 slit guidance ligand 1 protein-coding 61151 D10Mit79 - - 10 3.66 cM DNA segment, Chr 10, Massachusetts Institute of Technology 79 unknown 667949 Gm8891 EG667949 - 5 A1|5 anaphase-promoting complex subunit 5 pseudogene pseudo 102635532 Gm32842 - - 8|8 predicted gene, 32842 pseudo 108579 Iap3ra7 - - - intracisternal A-type particle, U3 region, SINE repeat a-7 other 102636545 XR_378043 Gm33581 - - 6 F3|6 predicted gene, 33581 ncRNA 102638696 Gm26919 - - 6|6 predicted gene, 26919 protein-coding 257994 Olfr886-ps1 MOR0-12P - 9|9 A4 olfactory receptor 886, pseudogene 1 pseudo 104232 Ly79 - - - lymphocyte antigen 79 protein-coding 100416105 Gm16270 - - 10|10 C1 ADNP homeobox 2 pseudogene pseudo 102637297 XR_377096 Gm34145 - - 5 G1.3|5 predicted gene, 34145 ncRNA 237310 Mm.331979 NM_178258 ENSMUSG00000039760 Il22ra2 CRF2-10|CRF2-s1|CRF2X|Il-22bp - 10|10 A3 interleukin 22 receptor, alpha 2 protein-coding 492838 Bmd9 - - 7 77.87 cM bone mineral density 9 unknown 100040926 Mm.418484 XM_006517480 ENSMUSG00000110477 Gm3045 - - 13 B1|13 predicted gene 3045 protein-coding 108168802 LOC108168802 - - 2 G1 ubiquitin-40S ribosomal protein S27a pseudogene pseudo 105246078 LOC105246078 - - 16 A3 ubiquitin-40S ribosomal protein S27a pseudogene pseudo 102636084 Gm33254 - - 8|8 predicted gene, 33254 ncRNA 100862406 Gm21715 - - Y|Y predicted gene, 21715 protein-coding 105244143 Gm39810 - - 2|2 predicted gene, 39810 ncRNA 109279890 LOC109279890 Mm52 - - VISTA enhancer mm52 biological-region 17428 Mm.3759 NM_010813 ENSMUSG00000000282 Mnt Rox|bHLHd3 - 11 B5|11 45.76 cM max binding protein protein-coding 112188 Afpq9 - - - abdominal fat percent QTL 9 unknown 330941 Mm.335160 NM_177907 ENSMUSG00000078307 AI593442 E130102D23 - 9|9 A5.3 expressed sequence AI593442 protein-coding 78384 2210420L05Rik - - 10|10 RIKEN cDNA 2210420L05 gene protein-coding 71807 Mm.271754 NM_027931 ENSMUSG00000028107 Tars2 2610024N01Rik|AI429208|Tarsl1|thrRS - 3|3 F2.1 threonyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 12837 Mm.130388 NM_007739 ENSMUSG00000068196 Col8a1 Col8a-1 - 16|16 C1.1 collagen, type VIII, alpha 1 protein-coding 20258 sch - - - scant hair unknown 620758 Mm.480272 NM_001166724 ENSMUSG00000094931 Vmn1r160 Gm6178 - 7 A3|7 vomeronasal 1 receptor 160 protein-coding 21443 tclTuw24 tcl-Tuw24 - - t-complex lethal Tuw24 unknown 108168939 XR_001784277 Gm46852 - - 4 B1|4 predicted gene, 46852 ncRNA 243043 Mm.234821 NM_175519 ENSMUSG00000037653 Kctd8 A730087N02Rik - 5|5 C3.1 potassium channel tetramerisation domain containing 8 protein-coding 100040906 Gm3033 - - 14 A1|14 alpha28-takusan pseudogene pseudo 13070 Mm.302865 NM_019779 ENSMUSG00000032323 Cyp11a1 Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc - 9 B|9 31.63 cM cytochrome P450, family 11, subfamily a, polypeptide 1 protein-coding 105247334 LOC105247334 - - - uncharacterized LOC105247334 ncRNA 116774 Dautb3 - - - dopamine uptake transporter binding 3 unknown 105463053 Mm.403323 NR_131196 ENSMUSG00000087330 Bloodlinc Gm11616 - 11 D|11 66.29 cM Bloodlinc, erythroid developmental long intergenic non-protein coding transcript ncRNA 71051 Mm.158545 4933401L05Rik - - 18|18 E4 RIKEN cDNA 4933401L05 gene protein-coding 102637540 XR_001779323 Gm34323 - - 9 F4|9 predicted gene, 34323 ncRNA 16829 Ldha-ps Ldh-1ps|Ldh1-ps - 2|2 C1.1 lactate dehydrogenase A, pseudogene pseudo 102639111 XR_385429 Gm35502 - - 17 A2|17 predicted gene, 35502 ncRNA 382523 NM_001318003 Gm12260 H3t - 11|11 B1.3 predicted gene 12260 protein-coding 227960 Mm.219877 NM_145523 ENSMUSG00000026893 Gca 5133401E04Rik|AI573844 - 2|2 C1.3 grancalcin protein-coding 108299 Mmv2 Mmv-2 - - MCF endogenous virus 2 other 105243404 Mm.490699 LOC105243404 - - - uncharacterized LOC105243404 ncRNA 404562 AL118183 - - - expressed sequence AL118183 unknown 434935 Mm.426195 NM_001017393 ENSMUSG00000096122 Gm21943 - - Y|Y C2 predicted gene, 21943 protein-coding 100312546 Vmn1r-ps117 - - 13|13 A3.1 vomeronasal 1 receptor, pseudogene 117 pseudo 113865 Mm.431972 NM_053238 ENSMUSG00000115668 Vmn1r25 V1rc8 - 6|6 B3 vomeronasal 1 receptor 25 protein-coding 12015 Mm.4387 NM_007522 ENSMUSG00000024959 Bad AI325008|Bbc2 - 19|19 A BCL2-associated agonist of cell death protein-coding 11950 Mm.251152 NM_009725 ENSMUSG00000000563 Atp5f1 C76477 - 3 F2.2|3 46.46 cM ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1 protein-coding 27690 D11Moh17 - - - DNA segment, Chr 11, KL Mohlke 17 unknown 654431 Gm7333 EG654431 - 10|10 A4 spermine synthase pseudogene pseudo 100312513 Vmn1r-ps68 - - 7 A1|7 7.49 cM vomeronasal 1 receptor, pseudogene 68 pseudo 544872 Gm5786 EG544872 - 12|12 C1 ribosomal protein S2 pseudogene pseudo 666020 Gm7893 EG666020 - 1|1 B protein kinase inhibitor, gamma pseudogene pseudo 13997 Mm.368075 Etohd3 - - - ethanol decreased 3 protein-coding 100035364 Ccmp3 - - - cerebellar cAMP 3 unknown 102635244 Gm32634 - - 7|7 predicted gene, 32634 ncRNA 68905 Mm.64018 1110065H08Rik - - X|X RIKEN cDNA 1110065H08 gene protein-coding 105246597 XR_877928 Gm41867 - - 19 D2|19 predicted gene, 41867 ncRNA 102465887 NR_106170 ENSMUSG00000099071 Mir8095 Gm27566|mmu-mir-8095 - 16|16 B1 microRNA 8095 ncRNA 102632262 XR_387486 Gm30388 - - 1 G3|1 predicted gene, 30388 ncRNA 99292 Mm.473018 AW047270 - - - expressed sequence AW047270 unknown 23950 Mm.290110 NM_011847 ENSMUSG00000029131 Dnajb6 HSJ-2|Mrj|mDj4 - 5|5 B1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 258406 Mm.377484 NM_146411 ENSMUSG00000093839 Olfr462 MOR240-3 - 11|11 C olfactory receptor 462 protein-coding 102634950 XR_872203 Gm32409 - - 17 B1|17 predicted gene, 32409 ncRNA 61790 D3Mit222 - - 3 14.27 cM DNA segment, Chr 3, Massachusetts Institute of Technology 222 unknown 13454 Dp(12)9H Dp9H - - duplication, Chr 12, Harwell 9 other 76918 3110001N23Rik - - 5|5 RIKEN cDNA 3110001N23 gene protein-coding 102639667 XR_382035 Gm35925 - - 13 A1|13 predicted gene, 35925 ncRNA 105247147 XR_881369 Gm42299 - - 4 C3|4 predicted gene, 42299 ncRNA 100101807 Mm.439875 NM_001100116 ENSMUSG00000094103 1700047I17Rik2 - - 12|12 C1 RIKEN cDNA 1700047I17 gene 2 protein-coding 606716 Gm6075 EG606716|Ppia-ps1_125.1 - 1|1 A3 peptidylprolyl isomerase A pseudogene 1_125.1 pseudo 66367 Mm.29831 NM_175107 ENSMUSG00000049643 2310022A10Rik - - 7|7 A3 RIKEN cDNA 2310022A10 gene protein-coding 105243441 Gm39366 - - 9|9 predicted gene, 39366 ncRNA 100035016 Ahl6 - - - age-related hearing loss 6 unknown 74614 Mm.72179 NM_029021 ENSMUSG00000027670 Ocstamp 4833422F24Rik|OC-STAMP - 2|2 H3 osteoclast stimulatory transmembrane protein protein-coding 278795 Mm.490638 NM_001111140 ENSMUSG00000090291 Lrrc10b Gm705|SerdinR - 19|19 A leucine rich repeat containing 10B protein-coding 100416402 Gm12607 - - 4|4 C4 ribosomal protein L17 pseudogene pseudo 102634282 XR_380118 Gm31904 - - 10 A1|10 predicted gene, 31904 ncRNA 27929 D0Ffm5 2E12 - - DNA segment, Universitat Frankfurt, Frankfurt/Main 5 unknown 13347 Mm.41433 NM_010044 ENSMUSG00000028974 Dffa A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S - 4|4 E2 DNA fragmentation factor, alpha subunit protein-coding 72434 Mm.281093 NM_133743 ENSMUSG00000057454 Lypd3 2310061G07Rik|C4.4a - 7|7 A3 Ly6/Plaur domain containing 3 protein-coding 100035897 Ath23 - - - atherosclerosis 23 unknown 65106 Mm.291014 NM_022992 ENSMUSG00000035199 Arl6ip5 5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin - 6|6 D3 ADP-ribosylation factor-like 6 interacting protein 5 protein-coding 102633894 XR_389615 Gm31610 - - 3 A3|3 predicted gene, 31610 ncRNA 105246287 XR_876854 Gm41591 - - 17 C|17 predicted gene, 41591 ncRNA 100036095 Ptnu1 - - 8 22.16 cM proteinuria 1 unknown 210104 Mm.333821 NM_001008549 ENSMUSG00000056592 Zfp658 - - 7|7 B3 zinc finger protein 658 protein-coding 102636679 XR_381914 Gm33682 - - 12 F1|12 predicted gene, 33682 ncRNA 240690 Mm.234612 NM_173868 ENSMUSG00000033740 St18 AV348974|Myt3|NZF-3|Nzf3|mKIAA0535 - 1|1 A1 suppression of tumorigenicity 18 protein-coding 100043261 Gm4322 - - 1 G1|1 predicted gene 4322 pseudo 69358 Mm.214841 NM_027053 ENSMUSG00000064307 Lrrc51 1700008D07Rik|Lrtomt - 7|7 E2 leucine rich repeat containing 51 protein-coding 320731 Mm.131241 A530030E21Rik - - 16|16 RIKEN cDNA A530030E21 gene protein-coding 52458 Mm.441745 D15Ertd55e - - 15 44.19 cM DNA segment, Chr 15, ERATO Doi 55, expressed unknown 102640281 XR_390303 Gm36391 - - 2 H4|2 predicted gene, 36391 ncRNA 18861 Mm.2950 NM_008886 ENSMUSG00000075569 Pms2 AW555130|Pmsl2 - 5 82.82 cM|5 G2 PMS1 homolog2, mismatch repair system component protein-coding 268932 Mm.70989 NM_027937 ENSMUSG00000033597 Caskin1 3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306 - 17|17 A3.3 CASK interacting protein 1 protein-coding 100862374 LOC100862374 - - 11 A3.1 40S ribosomal protein S2 pseudogene pseudo 629024 Mm.391230 NR_033482 ENSMUSG00000087586 Gm6938 EG629024 - X|X A2 predicted gene 6938 ncRNA 73811 Mm.55644 NR_045350 ENSMUSG00000110754 4930405J17Rik - - 10|10 A3 RIKEN cDNA 4930405J17 gene ncRNA 20941 Mm.1286 NM_009300 ENSMUSG00000016998 Svs4 SVS-IV|Svp-2|Svp-4|Svp2|Svp4 - 2 H3|2 85.01 cM seminal vesicle secretory protein 4 protein-coding 102632408 XR_376500 Gm30487 - - 4 C7|4 predicted gene, 30487 ncRNA 52854 D2Bwg0161e - - 2 17.15 cM DNA segment, Chr 2, Brigham & Women's Genetics 0161 expressed unknown 100038960 Gm16431 EG666142 - X|X A5 X-linked lymphocyte-regulated complex pseudogene pseudo 100035339 Org2 ORG3.1 - 3 43.71 cM organ weight 2 unknown 102635254 XR_382764 Gm32640 - - 13 D1|13 predicted gene, 32640 ncRNA 100034943 Phl2 - - - progressive hearing loss 2 unknown 672951 Vmn2r-ps7 - - 3|3 E1 vomeronasal 2, receptor, pseudogene 7 pseudo 100502637 Gm19300 - - 13|13 14.01 cM 60S ribosomal protein L13-like pseudo 101055708 LOC101055708 - - X F2 histidine-rich glycoprotein-like pseudo 100416334 Rpl15-ps5 Gm18047 - 7|7 E1 ribosomal protein L15, pseudogene 5 pseudo 68044 Mm.32656 NM_026527 ENSMUSG00000020309 Chac2 - - 11|11 A4 ChaC, cation transport regulator 2 protein-coding 17125 Mm.223717 NM_008539 ENSMUSG00000031681 Smad1 AI528653|Madh1|Madr1|Mlp1|MusMLP - 8|8 C1 SMAD family member 1 protein-coding 629652 Gm6991 EG629652 - 10|10 B3 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 100504511 Mm.477718 Gm29349 Gm17361 - Y|Y predicted gene 29349 protein-coding 17441 Mm.210857 NM_010814 ENSMUSG00000076439 Mog B230317G11Rik - 17 B1|17 19.16 cM myelin oligodendrocyte glycoprotein protein-coding 108863617 LOC108863617 - - 5 F -8.7 kb enhancer upstream of Gfi1 biological-region 102467237 n-TAcgc5 n-Ta24 - X F1|X nuclear encoded tRNA alanine 5 (anticodon CGC) tRNA 381413 Mm.70979 NM_201367 ENSMUSG00000040133 Gpr176 Gm1012 - 2|2 E5 G protein-coupled receptor 176 protein-coding 492896 Egrm1 - - 1 38.55 cM early growth rate, maternal effect 1 unknown 319537 Mm.224767 B230334C09Rik - - 3|3 RIKEN cDNA B230334C09 gene ncRNA 105244987 XR_870508 Gm40504 - - 8 B3.3|8 predicted gene, 40504 ncRNA 117081 Cpfd1 Cpfd-1q - 1 67.71 cM cerebellum pattern fissures, declival 1 unknown 16691 Mm.358618 NM_031170 ENSMUSG00000049382 Krt8 AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8 - 15 F2|15 57.2 cM keratin 8 protein-coding 107774 Tse2 Tse-2 - - tissue specific extinction 2, of L-ADH protein-coding 327799 Mm.491598 NM_183199 ENSMUSG00000020020 Usp44 E430004F17Rik - 10|10 C2 ubiquitin specific peptidase 44 protein-coding 27548 D7Zem3 Igf2|MAR3 - - DNA segment, Chr 7, Zemel 3 unknown 692153 Igkv13-87 Gm11145 - 6|6 C1 immunoglobulin kappa variable 13-87 pseudo 435270 Gm11424 Set8-ps - 11|11 C SET domain-containing protein 8 pseudogene pseudo 73957 Mm.444659 4930451G21Rik - - 4|4 RIKEN cDNA 4930451G21 gene protein-coding 105245812 Gm41202 - - 14|14 predicted gene, 41202 ncRNA 14269 Mm.52297 NM_019406 ENSMUSG00000075415 Fnbp1 1110057E06Rik|2210010H06Rik|FBP1|Fbp17 - 2|2 B formin binding protein 1 protein-coding 100416073 Gm17904 - - 1|1 B microrchidia 2A pseudogene pseudo 100503952 Gm13433 - - 2|2 17.35 cM cytochrome c oxidase subunit 7A2, mitochondrial-like pseudo 108168216 Gm46499 - - 15 D1|15 coiled-coil-helix-coiled-coil-helix domain-containing protein 2 pseudogene pseudo 171276 V1rh19 - - 13|13 vomeronasal 1 receptor, H19 protein-coding 102639554 XR_391124 Gm15928 - - 7 A1|7 2.3 cM predicted gene 15928 ncRNA 102632098 Gm30261 - - 10|10 predicted gene, 30261 ncRNA 258807 Mm.223234 NM_146811 ENSMUSG00000060114 Olfr910 MOR165-3 - 9|9 A5.1 olfactory receptor 910 protein-coding 619883 XM_884704 Gm6109 EG619883 - 13|13 C3 predicted gene 6109 protein-coding 101056138 Mm.389085 NR_136904 ENSMUSG00000093482 Gm20619 - - 6 A1|6 2.45 cM predicted gene 20619 ncRNA 102640656 XR_879093 ENSMUSG00000109696 Gm36670 Gm45611 - 8 C5|8 predicted gene, 36670 ncRNA 105242893 XR_881919 Gm38977 - - 7 B1|7 predicted gene, 38977 ncRNA 100302687 Gm17814 - - 17|17 A3.3 membrane-associated ring finger (C3HC4) 5 pseudogene pseudo 16769 Mm.358619 NM_181564 ENSMUSG00000001804 Dsg4 CDHF13|lah - 18 A2|18 11.35 cM desmoglein 4 protein-coding 271844 Mm.24880 NM_001024145 ENSMUSG00000046971 Pla2g4f 4732472I07Rik|Gm647|Pla2zeta - 2|2 E5 phospholipase A2, group IVF protein-coding 63001 D12Mit284 - - 12 10.04 cM DNA Segment, Chr 12, Massachusetts Institute of Technology 284 unknown 105948585 Mm.32518 NR_132308 Gm45928 Clcf1-pold4 - 19 A|19 predicted gene, 45928 ncRNA 68271 Mm.145530 NM_026649 Zfp85os 4930441O14Rik - 13|13 B3 zinc finger protein 85, opposite strand ncRNA 102637232 Gm34101 - - 8|8 predicted gene, 34101 ncRNA 105243743 XR_878313 Gm39550 - - X F5|X predicted gene, 39550 ncRNA 72554 Mm.336045 NM_028276 ENSMUSG00000063785 Utp14a 2700066J21Rik|JsdX|NY-CO-16|SDCCAG16|T25628|mKIAA0266 - X|X A5 UTP14A small subunit processome component protein-coding 67548 Mm.148731 XR_376519 ENSMUSG00000087289 4933424M12Rik - - 4|4 C7 RIKEN cDNA 4933424M12 gene ncRNA 60834 D4Mit82 - - 4 34.06 cM DNA segment, Chr 4, Massachusetts Institute of Technology 82 unknown 105243890 Mm.383635 NR_151529 Gm28822 - - 1 A5|1 predicted gene 28822 ncRNA 100462933 Gm19249 - - 13 B2|13 31.94 cM thymosin, beta 10 pseudogene pseudo 654462 Mm.388913 NM_001039124 ENSMUSG00000073774 Kncn Kino|L5 - 4|4 D1 kinocilin protein-coding 105246336 XR_877035 Gm41637 - - 17 E4|17 predicted gene, 41637 ncRNA 212377 Mm.120919 NM_199467 ENSMUSG00000045751 Mms22l F730047E07Rik|Gm134 - 4|4 A3 MMS22-like, DNA repair protein protein-coding 102632110 Gm16061 - - 5|5 75.35 cM predicted gene 16061 ncRNA 61809 D2Mit380 - - 2 40.89 cM DNA segment, Chr 2, Massachusetts Institute of Technology 380 unknown 60692 D1Mit7 - - 1 38.55 cM DNA segment, Chr 1, Massachusetts Institute of Technology 7 unknown 100035079 Egq9 - - - early growth QTL 9 unknown 109280010 LOC109280010 Mm104 - - VISTA enhancer mm104 biological-region 433466 Mm.482417 NM_001114637 ENSMUSG00000098789 Jmjd7 - - 2 E5|2 jumonji domain containing 7 protein-coding 100312484 Mm.480290 NM_001167541 ENSMUSG00000069295 Vmn1r196 V1rh19 - 13 A3.1|13 vomeronasal 1 receptor 196 protein-coding 62413 D14Mit222 - - 14 14.19 cM DNA segment, Chr 14, Massachusetts Institute of Technology 222 unknown 97865 C78515 - - - expressed sequence C78515 protein-coding 73027 2900046L07Rik - - 15|15 RIKEN cDNA 2900046L07 gene protein-coding 17926 Mm.10694 NM_010865 ENSMUSG00000026697 Myoc AI957332|GLC1A|TIGR - 1 H2.1|1 70.29 cM myocilin protein-coding 61658 D7Mit270 - - 7 25.61 cM DNA segment, Chr 7, Massachusetts Institute of Technology 270 unknown 13636 Mm.15675 NM_010107 ENSMUSG00000027954 Efna1 AI325262|B61|Efl1|Epl1|Eplg1|Lerk1 - 3 F1|3 39.04 cM ephrin A1 protein-coding 435612 Gm5696 EG435612 - 1|1 A4 transmembrane emp24 domain trafficking protein 2 pseudogene pseudo 667920 Gm13726 - - 2|2 C3 ribosomal protein L7A pseudogene pseudo 259025 Mm.377795 NM_147023 ENSMUSG00000095095 Olfr385 MOR135-3 - 11|11 B4 olfactory receptor 385 protein-coding 100042695 Gm3972 - - 7 A1|7 vomeronasal 2, receptor 31 pseudogene pseudo 73738 Mm.264899 NM_028633 ENSMUSG00000031371 Haus7 1110020L19Rik|Uchl5ip|Uip1 - X|X A7.3 HAUS augmin-like complex, subunit 7 protein-coding 102637008 XR_375701 Gm33923 - - 3 E1|3 predicted gene, 33923 ncRNA 108022 Mm.426557 Igkv6-15 Igk-V19-15 - 6|6 C1 immunoglobulin kappa variable 6-15 other 102636934 XR_376429 Gm12707 - - 4 C5|4 43.77 cM predicted gene 12707 ncRNA 60533 Mm.245363 NM_021893 ENSMUSG00000016496 Cd274 A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1 - 19|19 C1 CD274 antigen protein-coding 12397 Cbfa2t2-ps1 Cbfa2t2h-ps1|yMTGR1 - 5|5 C2 core-binding factor, runt domain, alpha subunit 2; translocated to, (human), pseudogene 1 pseudo 102631684 XR_384857 Gm29960 - - 16 B4|16 predicted gene, 29960 ncRNA 244431 Mm.210388 NM_145841 ENSMUSG00000039539 Sgcz C230085N17Rik - 8|8 A4 sarcoglycan zeta protein-coding 665751 Gm7769 EG665751 - 9|9 A3 BCL2/adenovirus E1B interacting protein 2 pseudogene pseudo 69069 Mm.261609 NM_001163616 ENSMUSG00000041707 1810011H11Rik 4733401I05Rik - 14|14 B RIKEN cDNA 1810011H11 gene protein-coding 102631830 XR_385869 Gm29418 - - 17 E4|17 predicted gene 29418 ncRNA 102633927 XR_383539 Gm31632 - - 14 D2|14 predicted gene, 31632 ncRNA 102635805 XR_001778572 Gm33052 - - 8 B3.3|8 predicted gene, 33052 ncRNA 102637219 LOC102637219 - - 13 D2.2 40S ribosomal protein S13-like pseudo 238247 Mm.241601 NM_001081195 ENSMUSG00000048118 Arid4a A630009N03|A630067N03Rik|Rbbp1 - 12|12 C2 AT rich interactive domain 4A (RBP1-like) protein-coding 14451 Mm.22701 NM_008086 ENSMUSG00000052957 Gas1 AW554192|Gas-1 - 13 B2|13 31.92 cM growth arrest specific 1 protein-coding 100417899 Gm12598 - - 11|11 A1 BRCA1/BRCA2-containing complex, subunit 3 pseudogene pseudo 21118 T(2;14)48H T48H - - reciprocal translocation, Chr 2 and 14, Harwell 48 other 493153 Prxsh - - 8 39.16 cM preaxial shift unknown 105244007 Mm.67742 XR_865726 LOC105244007 - - 1 H3 uncharacterized LOC105244007 ncRNA 100418071 Gm13590 - - 2|2 C1.3 soc-2 (suppressor of clear) homolog pseudogene pseudo 105245518 XR_873517 Gm40964 - - 13 B1|13 predicted gene, 40964 ncRNA 360211 Mm.271557 NM_183035 ENSMUSG00000052554 Defb34 BD-34 - 8|8 A1.3 defensin beta 34 protein-coding 668976 Mm.227643 NM_001205108 ENSMUSG00000079702 Ssxb6 - - X|X A1.1 synovial sarcoma, X member B6 protein-coding 53424 Mm.5248 NM_016909 ENSMUSG00000056820 Tsnax R74833|Trax - 8 E2|8 73.1 cM translin-associated factor X protein-coding 109365 El6 - - 11 73.57 cM epilepsy 6 unknown 61026 D7Mit144 - - 7 15.46 cM DNA segment, Chr 7, Massachusetts Institute of Technology 144 unknown 626952 Gm6723 EG626952 - 15|15 E1 L antigen family, member 3 pseudogene pseudo 320461 Mm.441050 D430033H22Rik - - 19|19 RIKEN cDNA D430033H22 gene protein-coding 62651 D14Mit166 - - - DNA segment, Chr 14, Massachusetts Institute of Technology 166 unknown 102467313 n-TGgcc9 n-Tg14 - 3 F1|3 nuclear encoded tRNA glycine 9 (anticodon GCC) tRNA 269063 Mm.268940 NM_183190 ENSMUSG00000054523 Ms4a5 - - 19|19 A membrane-spanning 4-domains, subfamily A, member 5 protein-coding 332934 Mm.388911 NM_001014900 ENSMUSG00000070806 Zmynd12 AI414736 - 4|4 D2.1 zinc finger, MYND domain containing 12 protein-coding 101651 Mm.443493 AI785031 - - - expressed sequence AI785031 protein-coding 104174 Mm.274852 NM_138595 ENSMUSG00000024827 Gldc D030049L12Rik|D19Wsu57e|b2b2679Clo - 19 C1|19 24.87 cM glycine decarboxylase protein-coding 67182 Mm.30181 NM_026018 ENSMUSG00000028716 Pdzk1ip1 0610007F13Rik|2700030M23Rik|AU046042|Map17 - 4|4 D1 PDZK1 interacting protein 1 protein-coding 100036244 Mmtp1 - - 7 17.4 cM modifier of mammary tumor progression 1 unknown 268491 Mm.447643 NM_001127576 ENSMUSG00000051455 Meioc Gm1564|Gm663 - 11|11 E1 meiosis specific with coiled-coil domain protein-coding 246278 Mm.136079 NM_144943 ENSMUSG00000034783 Cd207 - - 6|6 C3 CD207 antigen protein-coding 102640323 XR_386649 Gm36419 - - 19 C1|19 predicted gene, 36419 ncRNA 258715 Mm.377650 NM_146720 ENSMUSG00000091950 Olfr421-ps1 MOR105-3|Olfr421|Olfr422-ps1 - 1|1 H3 olfactory receptor 421, pseudogene 1 protein-coding 73761 Mm.39183 NR_126430 4833415N18Rik - - 16|16 A1 RIKEN cDNA 4833415N18 gene ncRNA 269980 Gm5053 EG269980 - 7|7 E3 deubiquitinating enzyme 1a pseudogene pseudo 100034963 Brmth11 - - - behavioral response to methamphetamines 11 unknown 102638728 XR_373346 Gm35222 - - 1 B|1 predicted gene, 35222 ncRNA 14658 Mm.275639 NM_010298 ENSMUSG00000028020 Glrb AI853901|Glyrb|spa|spastic - 3 E3|3 35.71 cM glycine receptor, beta subunit protein-coding 100504477 Mm.396396 NR_045091 ENSMUSG00000097511 Gm16677 - - 14 D2|14 36.05 cM predicted gene, 16677 ncRNA 258372 Mm.377462 NM_146375 ENSMUSG00000046150 Olfr918 MOR164-3 - 9|9 A5.1 olfactory receptor 918 protein-coding 12066 Bemv1 Bemv-1 - - B-26 envelope mouse retrovirus other 102635018 XR_373661 Gm32459 - - 1 H2.2|1 predicted gene, 32459 ncRNA 53106 Y83m2c2 - - - DNA segment, Y83m2c2 unknown 667341 Gm8582 EG667341 - 14 A2|14 spermatogenesis associated glutamate (E)-rich protein 2 pseudogene pseudo 100037256 Il4ppq - - - IL-4 producing potential QTL unknown 434438 Mm.425598 NM_001135198 ENSMUSG00000047220 Ccdc36 - - 9|9 F2 coiled-coil domain containing 36 protein-coding 108332 Pad6 - - - MMTV LTR integration site 6 other 100035037 Arigg6 - - - anti-RBC IgG antibodies 6 unknown 544923 XM_619089 ENSMUSG00000071452 Gm11397 - - 13 A3.3|13 predicted gene 11397 protein-coding 116811 Mm.381671 NR_036631 ENSMUSG00000108043 Zim3 1700128I23Rik - 7 A1|7 zinc finger, imprinted 3 ncRNA 100415986 Gm17855 - - X|X A3.1 predicted gene, 17855 pseudo 100038859 Mm.246543 NM_010998 ENSMUSG00000094891 Olfr55 IF6|MOR267-17|MOR267-20 - 17|17 B1 olfactory receptor 55 protein-coding 102636643 XR_376148 Gm33651 - - 3 H1|3 predicted gene, 33651 ncRNA 75784 Mm.443240 NM_001024614 ENSMUSG00000057816 1700007G11Rik 4930428O21Rik - 5|5 E3 RIKEN cDNA 1700007G11 gene protein-coding 105244721 XR_868340 Gm40279 - - 5 B1|5 predicted gene, 40279 ncRNA 101807 Mm.375497 AV356131 - - - expressed sequence AV356131 protein-coding 13058 Mm.200362 NM_007807 ENSMUSG00000015340 Cybb C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox - X|X A1.1 cytochrome b-245, beta polypeptide protein-coding 100125252 Trbj1-5 Gm16642 - 6 19.69 cM|6 B1 T cell receptor beta joining 1-5 other 110120457 LOC110120457 - - - VISTA enhancer mm1490 biological-region 171213 Radpf1 Radpf-1 - 17 18.59 cM radiation pulmonary fibrosis 1 unknown 258675 Mm.271517 NM_146680 ENSMUSG00000067529 Olfr1423 MOR239-3 - 19|19 A olfactory receptor 1423 protein-coding 108167397 LOC108167397 - - - Ig heavy chain V region 345-like other 319311 A830037D11Rik - - 2|2 RIKEN cDNA A830037D11 gene protein-coding 493031 Lith13 - - 5 29.12 cM lithogenic gene 13 unknown 85156 D5Mit358 - - 5 42.22 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 358 unknown 192100 Stheal3 - - 4 24.16 cM soft tissue heal 3 unknown 102636672 XR_386234 Gm33675 - - 18 D2|18 predicted gene, 33675 ncRNA 20568 Mm.371583 NM_011414 ENSMUSG00000017002 Slpi ALP - 2|2 H3 secretory leukocyte peptidase inhibitor protein-coding 216169 Mm.29802 NM_145421 ENSMUSG00000003346 Abhd17a 1700013O15Rik|BC005632|D10Bwg1364e|Fam108a - 10 C1|10 39.72 cM abhydrolase domain containing 17A protein-coding 102640589 Mm.60709 XR_875368 Gm36617 - - 15 D1|15 predicted gene, 36617 ncRNA 258098 Mm.377349 NM_001011832 ENSMUSG00000061387 Olfr1490 MOR266-6P - 19|19 A olfactory receptor 1490 protein-coding 628237 Gm6858 EG628237 - X|X A7.3 paraneoplastic antigen MA3 pseudogene pseudo 217707 Mm.280062 NM_172582 ENSMUSG00000021235 Coq6 5930427M12Rik|AW742344 - 12|12 D1 coenzyme Q6 monooxygenase protein-coding 20307 Mm.42029 NM_021443 ENSMUSG00000009185 Ccl8 1810063B20Rik|AB023418|HC14|MCP-2|Mcp2|Scya8 - 11 C|11 49.91 cM chemokine (C-C motif) ligand 8 protein-coding 108168582 XM_017318786 ENSMUSG00000099894 LOC108168582 - - Y D X-linked lymphocyte-regulated protein PM1-like protein-coding 102638135 XR_379645 Gm34771 - - 9 E1|9 predicted gene, 34771 ncRNA 105014 Mm.119343 NM_023697 ENSMUSG00000020621 Rdh14 3110030G19Rik|AW215439|PAN2 - 12|12 A1.1 retinol dehydrogenase 14 (all-trans and 9-cis) protein-coding 72049 Mm.240047 NM_028075 ENSMUSG00000068105 Tnfrsf13c 2010006P15Rik|BAFF-R|Baffr|Bcmd|Bcmd-1|Bcmd1|Lvis22 - 15|15 E1 tumor necrosis factor receptor superfamily, member 13c protein-coding 18689 Mm.41972 NM_008835 ENSMUSG00000031802 Phxr4 Sp5 - 9|9 A1 per-hexamer repeat gene 4 ncRNA 14595 Mm.15622 NM_022305 ENSMUSG00000028413 B4galt1 B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1 - 4 A5|4 20.46 cM UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 protein-coding 107980442 LOC107980442 - - - Pax3 upstream hypaxial enhancer biological-region 102632563 XR_387643 Gm30604 - - 5 F|5 predicted gene, 30604 ncRNA 61997 D8Mit348 - - 8 42.1 cM DNA segment, Chr 8, Massachusetts Institute of Technology 348 unknown 59004 Mm.34428 NM_021501 ENSMUSG00000004934 Pias4 PIASY|Pias-gamma|Piasg - 10|10 C1 protein inhibitor of activated STAT 4 protein-coding 104387 Exi - - - exogenous integration site unknown 100039285 Gm12140 - - 11|11 A5 predicted gene 12140 pseudo 282626 D15Gsk2 - - - DNA segment, Chr 15, GlaxoSmithKline 2 unknown 667317 Gm8572 EG667317 - 18|18 D1 RAN guanine nucleotide release factor pseudogene pseudo 492989 Lnopy1 - - 4 46.99 cM lens opacity 1 unknown 665366 Rpl18a-ps1 EG665366|Gm7602 - 12 C1|12 ribosomal protein L18A, pseudogene 1 pseudo 258166 Mm.389313 NM_001011534 ENSMUSG00000075222 Olfr988 MOR203-5P - 2|2 D olfactory receptor 988 protein-coding 102639492 XR_376844 Gm35795 - - 5 B1|5 predicted gene, 35795 ncRNA 69656 Mm.293463 NM_027153 ENSMUSG00000031379 Pir 2310042L19Rik|Pirnl - X|X F5 pirin protein-coding 12916 Mm.5244 NM_013498 ENSMUSG00000063889 Crem ICER|ICERI - 18|18 A1 cAMP responsive element modulator protein-coding 359889 DXMgc37 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 37 unknown 623168 Gm6401 EG623168 - 14|14 B predicted gene 6401 protein-coding 102638278 Gm34879 - - 11|11 predicted gene, 34879 ncRNA 102633262 XR_387653 Gm31129 - - 5 F|5 predicted gene, 31129 ncRNA 241263 Mm.166647 NM_175706 ENSMUSG00000045967 Gpr158 5330427M13Rik|mKIAA1136 - 2|2 A3 G protein-coupled receptor 158 protein-coding 98736 Mm.379232 NM_001024489 ENSMUSG00000055833 1700034H15Rik 4930557M11Rik|BB016121 - 1|1 H6 RIKEN cDNA 1700034H15 gene ncRNA 102633097 Mm.444679 XR_384365 Gm31007 - - 15 E3|15 predicted gene, 31007 ncRNA 102632200 Mm.155822 XR_389596 Gm30340 - - 3 A1|3 predicted gene, 30340 ncRNA 257909 Mm.482035 NM_001011754 ENSMUSG00000046210 Olfr735 MOR243-1 - 14|14 C1 olfactory receptor 735 protein-coding 19497 Rb(16.17)75Lub Rb75Lub - - Robertsonian translocation, Chr 16 and 17, Lubeck 75 other 100041951 XR_001782428 Gm3587 - - 18 B1|18 predicted gene 3587 ncRNA 60880 D7Mit44 - - 7 73.16 cM DNA segment, Chr 7, Massachusetts Institute of Technology 44 unknown 100417700 Gm15530 - - 16|16 B4 anaphase promoting complex subunit 10 pseudogene pseudo 777673 Ighd5-7 Gm17339 - 12|12 F1 immunoglobulin heavy diversity 5-7 pseudo 69388 Mm.138009 NR_045422 ENSMUSG00000109745 1700018G05Rik - - X|X D RIKEN cDNA 1700018G05 gene ncRNA 100039700 Gm16423 EG665397 - X|X A3.3 actin, beta pseudogene pseudo 102637929 XR_383841 Gm34618 - - 15 A1|15 predicted gene, 34618 ncRNA 112388 Eae7 - - 11 51.88 cM experimental allergic encephalomyelitis susceptibility 7 unknown 102639854 Gm36068 - - 3|3 predicted gene, 36068 protein-coding 66835 NR_028575 ENSMUSG00000089317 Snord123 - - 15|15 B3.1 small nucleolar RNA, C/D box 123 snoRNA 102635869 XR_378420 Gm33098 - - 7 E3|7 predicted gene, 33098 ncRNA 53063 EC84RL - - - DNA segment, EC84RL unknown 108167498 XR_001778343 Topbp1-ps1 Gm28059 - 7 B3|7 topoisomerase (DNA) II binding protein 1, pseudogene 1 ncRNA 76169 6330525I24Rik - - 18|18 RIKEN cDNA 6330525I24 gene protein-coding 108169173 XR_001785388 Gm25136 - - 6 G1|6 predicted gene, 25136 ncRNA 67228 Mm.389248 NM_026044 ENSMUSG00000026975 Dph7 2810443J12Rik|AW060693|Wdr85 - 2|2 A3 diphthamine biosynethesis 7 protein-coding 100504739 Mm.483812 Gm20382 - - 5|5 70.66 cM predicted gene, 20382 unknown 791081 NR_030433 ENSMUSG00000076458 Mir764 Mirn764|mir-764|mmu-mir-764 - X F2|X microRNA 764 ncRNA 102636980 XR_387233 Gm29538 - - 1 D|1 predicted gene 29538 ncRNA 60906 D8Mit68 - - 8 29.7 cM DNA segment, Chr 8, Massachusetts Institute of Technology 68 unknown 67606 Mm.291809 NM_026271 ENSMUSG00000074971 Fibin 1110018M03Rik - 2|2 E3 fin bud initiation factor homolog (zebrafish) protein-coding 105245236 XM_011243617 LOC105245236 - - 10 C1 zinc finger protein 120-like protein-coding 20394 Mm.4836 NM_009162 ENSMUSG00000023236 Scg5 7B2|AI325031|Sgne-1|Sgne1 - 2 E4|2 57.45 cM secretogranin V protein-coding 234857 Mm.150200 NM_172287 ENSMUSG00000010154 Spire2 BC026502|Spir-2|Spir2 - 8|8 E1 spire type actin nucleation factor 2 protein-coding 64833 Mm.352763 NM_022816 ENSMUSG00000047565 Acot10 Acate3|MT-ACT48|p48 - 15|15 A2 acyl-CoA thioesterase 10 protein-coding 102634949 Mm.387171 XR_374014 Gm13269 - - 2 A2|2 10.78 cM predicted gene 13269 ncRNA 27805 303E12F - - - DNA segment, 303E12F (Research Genetics) unknown 545651 Mm.149203 NM_001098841 ENSMUSG00000101163 Gm13278 - - 4 C4|4 predicted gene 13278 protein-coding 100416458 Gm18121 - - 10|10 D3 cofilin 1, non-muscle pseudogene pseudo 102635561 Mm.341797 NR_131197 Ggnbp2os - - 11 C|11 gametogenetin binding protein 2, opposite strand ncRNA 110120560 LOC110120560 - - - VISTA enhancer mm1499 biological-region 100503799 XR_868409 Gm7931 EG666103 - 5|5 B3 non-histone chromosomal protein HMG-17-like pseudo 100042866 Rps25-ps1 Gm10206 - 6|6 G3 ribosomal protein S25, pseudogene 1 pseudo 170748 Mm.86572 NM_133214 ENSMUSG00000058173 Smco4 Fn5 - 9|9 A2 single-pass membrane protein with coiled-coil domains 4 protein-coding 77580 Mm.483277 NM_175261 ENSMUSG00000056468 5730596B20Rik - - 6|6 B3 RIKEN cDNA 5730596B20 gene protein-coding 62873 D11Mit269 - - 11 25.41 cM DNA segment, Chr 11, Massachusetts Institute of Technology 269 unknown 105243140 XR_870246 Gm39141 - - 8 A2|8 predicted gene, 39141 ncRNA 102467287 n-TCgca50 n-Tc50 - 6 B2.3|6 nuclear encoded tRNA cysteine 50 (anticodon GCA) tRNA 61066 D3Mit265 - - 3 2.76 cM DNA segment, Chr 3, Massachusetts Institute of Technology 265 unknown 102639427 Mm.437942 XR_001782244 Gm16169 - - 17 A1|17 7.8 cM predicted gene 16169 ncRNA 18016 Mm.297109 NM_010898 ENSMUSG00000009073 Nf2 merlin - 11 A1|11 3.0 cM neurofibromin 2 protein-coding 16860 lgh - - - long hair unknown 100727 Mm.281844 NM_153598 ENSMUSG00000029260 Ugt2b34 AI788959 - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide B34 protein-coding 16600 Mm.4325 NM_010637 ENSMUSG00000003032 Klf4 EZF|Gklf|Zie - 4 B3|4 29.76 cM Kruppel-like factor 4 (gut) protein-coding 216345 Mm.207621 NM_001033261 ENSMUSG00000034163 Zfc3h1 BC033596|Ccdc131|Psrc2 - 10|10 D2 zinc finger, C3H1-type containing protein-coding 56444 Mm.29317 NM_019785 ENSMUSG00000021076 Actr10 Actr11|Arp11 - 12|12 C2 ARP10 actin-related protein 10 protein-coding 382117 Mm.215892 NM_001013405 ENSMUSG00000046603 Tcaim D9Ertd402e|Gm1129|TOAG-1 - 9 F4|9 73.14 cM T cell activation inhibitor, mitochondrial protein-coding 493079 Lmr8 - - 1 67.71 cM leishmaniasis resistance 8 unknown 100503271 Gm19624 - - 10|10 41.73 cM predicted gene, 19624 pseudo 100034797 Chol6 - - 9 2.93 cM cholesterol 6 unknown 387178 NR_030713 ENSMUSG00000065619 Mir183 Mirn183|mir-183|mmu-mir-183 - 6|6 A3.3 microRNA 183 ncRNA 67050 Mm.55422 NM_025937 ENSMUSG00000016409 Nkap 2610020O08Rik|AA987160|AI849147|AL024236 - X|X A3.3 NFKB activating protein protein-coding 100417931 Gm18906 - - 7|7 B4 DnaJ (Hsp40) homolog, subfamily B, member 7 pseudogene pseudo 16818 Mm.293753 NM_010693 ENSMUSG00000000409 Lck Hck-3|Lsk|Lskt|p56|p56Lck - 4 D2.2|4 63.26 cM lymphocyte protein tyrosine kinase protein-coding 68436 Mm.140568 NM_026724 ENSMUSG00000062006 Rpl34 1100001I22Rik - 3|3 G3 ribosomal protein L34 protein-coding 108168164 XR_001781272 ENSMUSG00000021983 LOC108168164 - - 14 D1 uncharacterized LOC108168164 ncRNA 12282 Mm.116721 NM_021395 ENSMUSG00000032115 Hyou1 AI415631|CBP-140|Cab140|Grp170|Orp150 - 9|9 A5.2 hypoxia up-regulated 1 protein-coding 668306 Mm.399053 LOC668306 - - 14 D1|14 uncharacterized LOC668306 protein-coding 100038375 Gm10531 - - 1 H1|1 predicted gene 10531 unknown 102636496 XR_867599 Gm33547 - - 3 G1|3 predicted gene, 33547 ncRNA 102638515 Mm.256927 XM_006500545 Gm10725 - - 2|2 H3 predicted gene 10725 ncRNA 19266 Mm.184021 NM_011211 ENSMUSG00000028399 Ptprd 1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta - 4 C3|4 36.94 cM protein tyrosine phosphatase, receptor type, D protein-coding 106707177 As071 - - - AmnSINE1 enhancer AS071 biological-region 329252 Mm.279594 NM_001033409 ENSMUSG00000042793 Lgr6 A530037C04Rik|D830026M09 - 1|1 E4 leucine-rich repeat-containing G protein-coupled receptor 6 protein-coding 433144 Gm5499 EG433144 - 17|17 E4 thioredoxin domain containing 14 pseudogene pseudo 257879 Olfr375-ps1 MOR203-8P - 3|3 G3 olfactory receptor 375, pseudogene 1 pseudo 666976 Gm8396 EG666976 - 14 A1|14 predicted gene 8396 pseudo 108167742 XR_001779527 Gm46168 - - 1 H2.3|1 predicted gene, 46168 ncRNA 791318 Mm.84339 NR_033552 ENSMUSG00000063087 Gm10125 Zeb1os - 18 A1|18 predicted gene 10125 ncRNA 100036490 Stzid2 Idd30 - 9 46.58 cM streptozotocin induced diabetes susceptibility 2 unknown 102913 Mm.40530 6330509M05Rik AI450287 - - RIKEN cDNA 6330509M05 gene protein-coding 670326 Gm16425 EG665712 - 8|8 A1.3 La ribonucleoprotein domain family, member 1 pseudogene pseudo 105245208 Gm40693 - - 10|10 predicted gene, 40693 ncRNA 100041550 Mm.485768 NM_001199332 ENSMUSG00000095520 Gm20877 - - Y|Y A1 predicted gene, 20877 protein-coding 102635937 Mm.421398 NR_132425 Gm12348 - - 11 D|11 63.47 cM predicted gene 12348 ncRNA 106804095 LOC106804095 - - 16 B1 nonconserved acetylation island sequence M94 enhancer biological-region 791339 Mm.336292 Gm15155 - - - predicted gene 15155 ncRNA 16192 Mm.3448 NM_008370 ENSMUSG00000005364 Il5ra CD125|CDw125|Il5r - 6 E1|6 49.19 cM interleukin 5 receptor, alpha protein-coding 16237 In(11)2Dn-d In(11)2Dn|In2Dn - - inversion, Chr 11, Davisson 2, distal other 17937 Mm.336898 NM_008668 ENSMUSG00000025402 Nab2 AI451907 - 10 D3|10 74.6 cM Ngfi-A binding protein 2 protein-coding 233001 Mm.11889 NM_194056 ENSMUSG00000054102 Nlrp9a D7Ertd565e|Nalp-theta|Nalp9a - 7 A3|7 15.08 cM NLR family, pyrin domain containing 9A protein-coding 105247439 LOC105247439 - - - uncharacterized LOC105247439 ncRNA 100417673 Gm18754 - - 10|10 D3 opioid growth factor receptor-like 1 pseudogene pseudo 102632130 XR_877087 Gm30284 - - 17 E4|17 predicted gene, 30284 ncRNA 493063 Ksc2 - - 4 4.14 cM keratinocyte stem cell locus 2 unknown 100417995 Gm18938 - - X|X A2 cyclin-dependent kinase 2 interacting protein pseudogene pseudo 50776 Mm.859 NM_015810 ENSMUSG00000020718 Polg2 mtPolB|p55|polG-beta - 11|11 E1 polymerase (DNA directed), gamma 2, accessory subunit protein-coding 668980 Gm9431 EG668980 - X A1.1|X predicted gene 9431 pseudo 623474 Mm.491200 NM_177285 ENSMUSG00000078773 Rad54b E130016E03Rik - 4|4 A1 RAD54 homolog B (S. cerevisiae) protein-coding 20643 Mm.249110 NM_009227 ENSMUSG00000090553 Snrpe AL022645|C76690|SME - 1|1 E4 small nuclear ribonucleoprotein E protein-coding 70080 Mm.98583 NM_027308 ENSMUSG00000040498 Igsf23 2210010C17Rik - 7|7 A3 immunoglobulin superfamily, member 23 protein-coding 493056 Gauc - - - glucose area under curve unknown 70470 Mm.290810 NM_027434 ENSMUSG00000027651 Rprd1b 2610304G08Rik|2810446G03Rik|Crept - 2|2 H1 regulation of nuclear pre-mRNA domain containing 1B protein-coding 66049 Mm.27792 NM_133185 ENSMUSG00000022540 Rogdi 0610011C19Rik|AU020118|C76152|Lzf - 16 A1|16 2.49 cM rogdi homolog protein-coding 80837 Mm.27467 NM_023275 ENSMUSG00000046768 Rhoj 1110005O19Rik|AW210585|Arhj|TC10L|TCL - 12|12 C3 ras homolog family member J protein-coding 71723 Mm.75259 NM_027883 ENSMUSG00000006019 Dhx34 1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134 - 7|7 A2 DEAH (Asp-Glu-Ala-His) box polypeptide 34 protein-coding 77669 Mm.98630 NM_029953 ENSMUSG00000040969 Arhgef38 9130221D24Rik|D630013G24Rik - 3|3 G3 Rho guanine nucleotide exchange factor (GEF) 38 protein-coding 61133 D5Mit407 - - 5 58.94 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 407 unknown 52638 D10Ertd494e - - 10 27.78 cM DNA segment, Chr 10, ERATO Doi 494, expressed unknown 67683 Mm.273405 NM_026312 ENSMUSG00000031226 Pbdc1 2610029G23Rik - X|X D polysaccharide biosynthesis domain containing 1 protein-coding 245847 Mm.87319 NM_172935 ENSMUSG00000036820 Amdhd2 5730457F11Rik - 17|17 A3.3 amidohydrolase domain containing 2 protein-coding 74633 Mm.262175 NR_040734 ENSMUSG00000086918 4930429F24Rik - - 9|9 E1 RIKEN cDNA 4930429F24 gene ncRNA 110113 Aia1 Aia-1 - - autoimmune hemolytic anemia 1 protein-coding 19894 Mm.181166 NM_011286 ENSMUSG00000029608 Rph3a 2900002P20Rik|AU022689|AW108370 - 5|5 F rabphilin 3A protein-coding 102637968 XR_389309 Gm34648 Gm43261 - 5 C3.3|5 predicted gene, 34648 ncRNA 17751 Mm.2064 NM_013603 ENSMUSG00000031760 Mt3 Mt-3 - 8 C5|8 46.29 cM metallothionein 3 protein-coding 100434 Mm.482207 NM_133891 ENSMUSG00000028412 Slc44a1 2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92 - 4|4 B2 solute carrier family 44, member 1 protein-coding 235169 Mm.138512 NM_172291 ENSMUSG00000039048 Foxred1 BC024806|TEG-23|Tex23 - 9 A4|9 FAD-dependent oxidoreductase domain containing 1 protein-coding 15600 Iap1-1 Iap(Ren-2) - - intracisternal A particles, Ren2 linked other 78470 1700112H04Rik - - - RIKEN cDNA 1700112H04 gene ncRNA 677785 Gm9722 EG677785 - 1|1 H5 predicted gene 9722 pseudo 100040607 Gm12813 - - 4|4 D1 selection and upkeep of intraepithelial T-cells protein 11-like pseudo 108167514 XR_001778380 Gm46028 - - 7 F3|7 predicted gene, 46028 ncRNA 61810 D2Mit376 - - 2 28.64 cM DNA segment, Chr 2, Massachusetts Institute of Technology 376 unknown 16332 Mm.476000 NM_010567 ENSMUSG00000032737 Inppl1 51C|SHIP2 - 7|7 E2 inositol polyphosphate phosphatase-like 1 protein-coding 432736 Mm.377950 NM_001013787 ENSMUSG00000071491 Vmn1r209 Gm11315 - 13 A3.1|13 vomeronasal 1 receptor 209 protein-coding 102638863 XR_391579 Gm35325 Gm44537 - 7 C|7 predicted gene, 35325 ncRNA 102634988 XR_386430 Gm32437 - - 18 E4|18 predicted gene, 32437 ncRNA 105245009 XR_870825 Gm40523 - - 9 B|9 predicted gene, 40523 ncRNA 17245 Mm.101191 NM_010785 ENSMUSG00000020212 Mdm1 Arrd2|Mdm-1 - 10 D2|10 66.65 cM transformed mouse 3T3 cell double minute 1 protein-coding 61471 D7Mit104 - - 7 71.29 cM DNA segment, Chr 7, Massachusetts Institute of Technology 104 unknown 71640 Mm.259988 NM_001142943 ENSMUSG00000032425 Zfp949 4930422I07Rik|Nczf - 9|9 E3.1 zinc finger protein 949 protein-coding 100042603 XR_875477 Gm3924 - - 15 E1|15 predicted gene 3924 ncRNA 19159 Mm.281003 NM_011182 ENSMUSG00000018001 Cyth3 AI648983|ARNO3|CLM3|Grp1|Pscd3 - 5 G2|5 82.36 cM cytohesin 3 protein-coding 493144 Mdmsc2 - - - modifier of muscularity 2 unknown 102808 AW742521 - - - expressed sequence AW742521 unknown 624519 Gm6510 EG624519 - 3|3 H4 geminin pseudogene pseudo 100526532 NR_037227 ENSMUSG00000092673 Mir3067 mir-3067|mmu-mir-3067 - 12 D1|12 37.41 cM microRNA 3067 ncRNA 66720 Mm.34168 NM_025727 ENSMUSG00000001558 Klhl10 4921517C11Rik - 11|11 D kelch-like 10 protein-coding 14674 Mm.193925 NM_010303 ENSMUSG00000020611 Gna13 AU024132|AU043124|Galpha13 - 11 E1|11 71.88 cM guanine nucleotide binding protein, alpha 13 protein-coding 237339 Mm.338439 NM_172787 ENSMUSG00000039089 L3mbtl3 AI481284|MBT-1 - 10|10 A4 L3MBTL3 histone methyl-lysine binding protein protein-coding 102635975 Mm.420550 NR_155280 Gm33174 - - 15 D3|15 predicted gene, 33174 ncRNA 102637772 XR_383397 Gm34499 - - 14 C1|14 predicted gene, 34499 ncRNA 258219 Mm.377382 NM_001011518 ENSMUSG00000043827 Olfr94 MOR256-32P - 17|17 B1 olfactory receptor 94 protein-coding 61561 D9Mit199 - - 9 51.41 cM DNA segment, Chr 9, Massachusetts Institute of Technology 199 unknown 110758 Actb-rs1 - - - actin, beta, cytoplasmic, related sequence 1 protein-coding 102632217 Gm28697 - - Y|Y predicted gene 28697 ncRNA 100862161 Gm21529 - - Y|Y predicted gene, 21529 protein-coding 623867 Gm6457 EG623867 - 18|18 A1 predicted pseudogene 6457 pseudo 108167610 XR_001778820 Gm46082 - - 1 A1|1 predicted gene, 46082 ncRNA 70122 Mm.288898 NM_027326 ENSMUSG00000028496 Mllt3 2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e - 4 C4|4 41.06 cM myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 protein-coding 102633338 XR_381768 Gm31187 - - 12 D1|12 predicted gene, 31187 ncRNA 258018 Olfr163-ps1 MOR131-3_p|MOR263-8P - 16|16 A1 olfactory receptor 163, pseudogene 1 pseudo 330496 Mm.454510 NM_001024673 ENSMUSG00000059128 Ifnl2 EG330496|IL-28A|Il28a - 7 B1|7 interferon lambda 2 protein-coding 100216532 NR_030705 ENSMUSG00000088524 Snord2 - - 16 B1|16 small nucleolar RNA, C/D box 2 snoRNA 100862359 NM_001281516 ENSMUSG00000095550 Gm21671 - - 5 B1|5 predicted gene, 21671 protein-coding 105243676 XR_882295 Gm39507 - - X A3.3|X predicted gene, 39507 ncRNA 108168544 XM_017318733 LOC108168544 - - Y B Y-linked testis-specific protein 1-like protein-coding 664817 Gm7353 EG664817 - 7|7 A1 zinc finger CCCH type containing 3 pseudogene pseudo 64821 Cigs1 CNS-1|Cns1|HSS1|HSS2 - - conserved intergenic sequence 1 other 100503691 Gm14552 - - X|X 20.08 cM predicted gene 14552 ncRNA 100417107 Gm15741 - - 4|4 D1 TRAF3 interacting protein 2 pseudogene pseudo 102637683 XR_389254 Gm34431 - - 4 D3|4 predicted gene, 34431 ncRNA 102635858 Gm29165 - - Y|Y predicted gene 29165 pseudo 73450 Mm.435 1700063J08Rik - - 17|17 RIKEN cDNA 1700063J08 gene protein-coding 52357 Mm.235074 NM_133791 ENSMUSG00000031563 Wwc2 5330431C14Rik|AU022508|C85457|D8Ertd594e - 8 B1.1|8 26.91 cM WW, C2 and coiled-coil domain containing 2 protein-coding 109517 Alcp20 - - 11 75.93 cM alcohol preference locus 20, female specific unknown 101764 AU022374 - - - expressed sequence AU022374 unknown 109170 2810428M03Rik - - 2|2 RIKEN cDNA 2810428M03 gene protein-coding 100416257 Gm12383 - - 4|4 A5 predicted gene 12383 pseudo 14404 Mm.391288 NM_017369 ENSMUSG00000031340 Gabre - - X|X A7.3 gamma-aminobutyric acid (GABA) A receptor, subunit epsilon protein-coding 69049 Mm.441449 NM_023493 ENSMUSG00000079494 Nat8f5 1810018F03Rik|Cml5 - 6|6 C3 N-acetyltransferase 8 (GCN5-related) family member 5 protein-coding 20739 Mm.200611 NM_011465 ENSMUSG00000026532 Spta1 AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph - 1 H3|1 80.97 cM spectrin alpha, erythrocytic 1 protein-coding 666630 Gm8201 EG666630 - 8|8 A3 translocase of outer mitochondrial membrane 40 homolog pseudogene pseudo 668389 Ighv2-4 EG668389|Gm9145 - 12|12 F1 immunoglobulin heavy variable V2-4 other 102632464 XR_385063 Gm30530 - - 16 C4|16 predicted gene, 30530 ncRNA 106450 D16Mgi32 - - - DNA Segment, Chr 16, Mouse Genome Informatics 3 unknown 108167658 XR_001779204 Gm46117 - - 1 D|1 predicted gene, 46117 ncRNA 100035291 Asdq1 - - - atrial septal defect QTL 1 unknown 17341 Mm.386767 NM_010800 ENSMUSG00000052271 Bhlha15 1810009C13Rik|Bhlhb8|MIST-1|Mist1 - 5|5 G2 basic helix-loop-helix family, member a15 protein-coding 105244043 XR_865819 Gm39727 - - 1 H5|1 predicted gene, 39727 ncRNA 102254 Mm.421055 AU045717 - - - expressed sequence AU045717 unknown 100217414 Mm.450690 NR_028518 ENSMUSG00000089536 Scarna3a MBI-114 - 1 H1|1 small Cajal body-specific RNA 3A ncRNA 107685 Carg2 - - - Candida albicans resistance gene 2 protein-coding 70378 Mm.451242 1810073G21Rik - - 19|19 RIKEN cDNA 1810073G21 gene protein-coding 545848 Mm.347895 Igkv4-80 Gm16729|af4 - 6|6 C1 immunoglobulin kappa variable 4-80 other 664867 Gm7378 EG664867 - 18 A1|18 rhomboid-related protein 2 pseudogene pseudo 13871 Mm.36524 NM_007949 ENSMUSG00000030400 Ercc2 AA407812|AU020867|AW240756|CXPD|Ercc-2|Mhdarco15|RCO015|XPD - 7 A3|7 9.62 cM excision repair cross-complementing rodent repair deficiency, complementation group 2 protein-coding 75602 Mm.437061 NR_033571 ENSMUSG00000084925 1810062O18Rik - - 14|14 A3 RIKEN cDNA 1810062O18 gene ncRNA 102639653 XM_017319407 ENSMUSG00000094932 LOC102639653 - - 2 H4 zinc finger protein 431-like protein-coding 108167976 XR_001780539 Gm46331 - - 12 F2|12 predicted gene, 46331 ncRNA 11838 Mm.491310 NM_018790 ENSMUSG00000022602 Arc Arc3.1|C86064|arg3.1|mArc - 15 D3|15 34.25 cM activity regulated cytoskeletal-associated protein protein-coding 74728 5033428C03Rik - - 5|5 RIKEN cDNA 5033428C03 gene protein-coding 105246161 XR_876254 Gm41495 - - 16 C4|16 predicted gene, 41495 ncRNA 56574 109F12R - - - DNA segment, 102F12R unknown 108899 Mm.386838 NM_175381 ENSMUSG00000053080 2700081O15Rik AI255177|AI848741|AW742297 - 19|19 A RIKEN cDNA 2700081O15 gene protein-coding 18944 Pnlf6 - - - prenatal lethal function 6 unknown 112332 Athsq1 - - 4 70.02 cM atherosclerosis susceptibility QTL 1 unknown 100417844 Gm21927 - - 11|11 B1.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 pseudogene pseudo 100039521 Mm.461709 Gm2287 - - 5 E1|5 predicted gene 2287 unknown 381314 Mm.275841 NM_198653 ENSMUSG00000026618 Iars2 2010002H18Rik|C79125 - 1|1 H5 isoleucine-tRNA synthetase 2, mitochondrial protein-coding 15490 Mm.12882 NM_010476 ENSMUSG00000026675 Hsd17b7 AI266814|ERG27 - 1|1 H3 hydroxysteroid (17-beta) dehydrogenase 7 protein-coding 13424 Mm.181430 NM_030238 ENSMUSG00000018707 Dync1h1 9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325 - 12 F1|12 60.7 cM dynein cytoplasmic 1 heavy chain 1 protein-coding 238678 Gm4935 - - 13 B3|13 methylmalonic aciduria type A pseudogene pseudo 73486 Mm.483393 NM_028551 ENSMUSG00000058101 1700084J12Rik - - 15|15 B3.1 ribosomal protein L7-like 1 pseudogene pseudo 213409 Mm.426321 NM_001033250 ENSMUSG00000079330 Lemd1 4930540I23Rik|6430514M23Rik|AI428128|LEMP-1 - 1|1 E4 LEM domain containing 1 protein-coding 20429 Mm.39093 NM_013665 ENSMUSG00000027833 Shox2 6330543G17Rik|OG12|Og12x|Prx3|SHOT - 3 E1|3 30.76 cM short stature homeobox 2 protein-coding 102635042 Mm.246814 XR_388232 Gm32478 - - 8 E2|8 predicted gene, 32478 ncRNA 108168846 XR_001783636 Gm46794 - - 2 H4|2 predicted gene, 46794 ncRNA 258872 Mm.377730 NM_146872 ENSMUSG00000110991 Olfr908 MOR165-2 - 9|9 A5.1 olfactory receptor 908 protein-coding 105246763 XR_878693 Gm42005 - - 5 F|5 predicted gene, 42005 ncRNA 105247264 Gm42392 - - 7|7 predicted gene, 42392 ncRNA 100035565 Splq8 - - - spleen weight QTL 8 unknown 97954 C77847 - - - expressed sequence C77847 unknown 76157 Mm.74324 NM_029529 ENSMUSG00000050473 Slc35d3 6230421J19Rik|Frcl1 - 10|10 A3 solute carrier family 35, member D3 protein-coding 233802 Mm.26392 NM_145585 ENSMUSG00000030942 Thumpd1 6330575P11Rik - 7 F2|7 64.13 cM THUMP domain containing 1 protein-coding 102637388 Gm14286 - - 2|2 78.4 cM predicted gene 14286 ncRNA 62167 D14Mit65 - - 14 31.62 cM DNA segment, Chr 14, Massachusetts Institute of Technology 65 unknown 100035178 Ptnu2 - - 17 12.53 cM proteinuria 2 unknown 66223 Mm.28579 NM_025430 ENSMUSG00000052962 Mrpl35 1110066C01Rik - 6|6 C1 mitochondrial ribosomal protein L35 protein-coding 67533 Mm.103382 NM_026221 ENSMUSG00000016487 Ppfibp1 4632409B19Rik|AW214454|AW261454 - 6|6 G3 PTPRF interacting protein, binding protein 1 (liprin beta 1) protein-coding 62325 D6Mit128 - - 6 35.94 cM DNA segment, Chr 6, Massachusetts Institute of Technology 128 unknown 404343 Olfr182-ps1 GA_x5J8B7W8B52-350793-350639 - 16|16 C1.3 olfactory receptor 182, pseudogene 1 pseudo 100040185 Gm2651 - - 6 A1|6 COX11 homolog, cytochrome c oxidase assembly protein pseudogene pseudo 100035536 Lmr4 - - 6 28.17 cM leishmaniasis resistance 4 unknown 100049155 Mm.41166 D930027P08Rik - - - RIKEN cDNA D930027P08 gene unknown 70100 Mm.158330 NR_037997 ENSMUSG00000099411 2310015D24Rik - - 16|16 A1 RIKEN cDNA 2310015D24 gene ncRNA 16820 Mm.4632 NM_010694 ENSMUSG00000026936 Lcn3 Vnsp1 - 2|2 A3 lipocalin 3 protein-coding 78748 Mm.349943 NM_175279 ENSMUSG00000098132 Rassf10 4632411J06Rik - 7|7 F1 Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 protein-coding 102632691 Gm30696 - - 17|17 predicted gene, 30696 ncRNA 102635781 XM_006498513 Gm38481 - - 2 C1.1|2 predicted gene, 38481 protein-coding 100036214 Trmq2 - - 2 57.31 cM T cell ratio modifier QTL 2 unknown 100039628 Gm2345 - - 3|3 C adhesion regulating molecule 1 pseudogene pseudo 77825 Mm.447297 A930027M08Rik - - 12|12 RIKEN cDNA A930027M08 gene protein-coding 105245769 XR_874674 Gm41166 - - 14 D1|14 predicted gene, 41166 ncRNA 61841 D19Mit78 - - 19 5.33 cM DNA segment, Chr 19, Massachusetts Institute of Technology 78 unknown 100041990 Gm13259 - - 4|4 D2.3 predicted gene 13259 pseudo 111776 Iapls3-6 - - - intracisternal A particle, lymphocyte specific 3-6 other 27837 D2Dcr10 - - - DNA segment, Chr 2, Derry C. Roopenian 10 unknown 100041344 Gm14686 - - X A7.3|X predicted gene 14686 pseudo 102467398 n-TYgta9 n-Ty9 - 5 B1|5 nuclear encoded tRNA tyrosine 9 (anticodon GTA) tRNA 61525 D8Mit182 - - 8 46.57 cM DNA segment, Chr 8, Massachusetts Institute of Technology 182 unknown 330403 Mm.483639 NM_177885 Gm9946 C630010N09|EG330403 - 6 F1|6 predicted gene 9946 unknown 52093 D6Ggc4e - - - DNA segment, Chr 6, G. Consalez 4, expressed unknown 105243931 XR_865447 Gm39646 - - 1 C1.3|1 predicted gene, 39646 ncRNA 692161 Mm.288753 Igkv19-93 Igk-V38|Vx38C - 6 31.27 cM|6 C1 immunoglobulin kappa chain variable 19-93 other 102632231 Mm.444780 NR_155272 LOC102632231 - - 15 A1 uncharacterized LOC102632231 ncRNA 105273 AU018574 - - - expressed sequence AU018574 protein-coding 102467272 n-TCgca14 n-Tc14 - 6 B2.3|6 nuclear encoded tRNA cysteine 14 (anticodon GCA) tRNA 27630 D17Leh467 - - - DNA segment, Chr 17, Lehrach 467 unknown 100418346 Gm14678 - - X|X A6 tumor necrosis factor, alpha-induced protein 1 (endothelial) pseudogene pseudo 102640633 Gm36650 - - 2|2 predicted gene, 36650 ncRNA 442834 Mm.483803 NM_001167918 D830031N03Rik Kiaa0754|mKIAA0754 - 4|4 D2.2 RIKEN cDNA D830031N03 gene protein-coding 100043398 Scgb2b22-ps Abpbg22-ps|Gm12767 - 7|7 B1 secretoglobin, family 2B, member 22, pseudogene pseudo 105246941 XR_880493 Gm42135 - - 5 E5|5 predicted gene, 42135 ncRNA 52134 D4Ertd510e - - 4 13.56 cM DNA segment, Chr 4, ERATO Doi 510, expressed unknown 210789 Mm.320639 NM_173380 ENSMUSG00000033083 Tbc1d4 5930406J04Rik|A930035N22|AV295684|As160 - 14|14 E2.3 TBC1 domain family, member 4 protein-coding 276846 Mm.295908 NM_201406 ENSMUSG00000041958 Pigs BC058979|Gm393|Gm689 - 11|11 B5 phosphatidylinositol glycan anchor biosynthesis, class S protein-coding 545039 Gm5799 EG545039 - 14|14 C1 predicted gene 5799 pseudo 330070 Mm.105295 Gm5107 9630041C05|EG330070 - 5|5 B3 predicted gene 5107 unknown 100316903 Mm.200763 NR_033148 Gm20605 Lrch4-sap25 - 5 G2 predicted gene 20605 ncRNA 105245445 XR_873080 Gm40899 - - 12 F2|12 predicted gene, 40899 ncRNA 100038485 Mm.388321 Gm10398 - - - predicted gene 10398 protein-coding 13008 Mm.2020 NM_007792 ENSMUSG00000020186 Csrp2 AW551867|Crp2|SmLim - 10|10 D1 cysteine and glycine-rich protein 2 protein-coding 216225 Mm.77381 NM_145423 ENSMUSG00000020062 Slc5a8 Ait|SMCT - 10|10 C1 solute carrier family 5 (iodide transporter), member 8 protein-coding 56700 Mm.439922 NM_020003 ENSMUSG00000001418 Glmp 0610031J06Rik|AB027141|NCU-G1 - 3|3 F1 glycosylated lysosomal membrane protein protein-coding 110120514 LOC110120514 - - - VISTA enhancer mm1290 biological-region 78256 Mm.331032 4921539H07Rik 100040216|Gm2668 - 3|3 D RIKEN cDNA 4921539H07 gene protein-coding 27949 D11Nds1 - - 11 45.76 cM DNA segment, Chr 11, Nuffield Department of Surgery 1 unknown 100035305 Sxbq1 Sxb-1 - 4 66.32 cM SGC/Knj cross B6 QTL 1 unknown 639655 Mm.425917 Trav13d-4 Gm17006|Trav13-4-dv7 - 14|14 C2 T cell receptor alpha variable 13D-4 other 102467402 n-TVaac8 n-Tv8 - 3 A3|3 nuclear encoded tRNA valine 8 (anticodon AAC) tRNA 78733 Mm.124905 NM_030159 ENSMUSG00000032783 Troap AW476063|E130301L11Rik|tastin - 15|15 F1 trophinin associated protein protein-coding 14755 Mm.362054 NM_011822 ENSMUSG00000025728 Pigq Gpi1|Gpi1h|Gpi1p|Gpih - 17|17 A3.3 phosphatidylinositol glycan anchor biosynthesis, class Q protein-coding 102637731 Gm34467 - - 1|1 predicted gene, 34467 ncRNA 61882 D1Mit322 - - - DNA segment, Chr 1, Massachusetts Institute of Technology 322 unknown 100504351 Gm20188 - - X F5|X 75.9 cM uncharacterized protein C8orf59 homolog pseudo 105246906 Gm42104 - - 5|5 predicted gene, 42104 ncRNA 140496 Mopkd2 MOP2 - 16 12.89 cM modifier of polycystic kidney disease progression 2 unknown 408058 Mm.177840 NM_001001185 ENSMUSG00000064063 BC048507 - - 13|13 B3 cDNA sequence BC048507 protein-coding 225058 Mm.312053 NM_001190356 Gm4832 EG225058 - 17|17 E4 predicted gene 4832 protein-coding 665794 Gm7787 - - 9|9 C predicted gene 7787 pseudo 19477 Rb(11.16)2H Rb2H - - Robertsonian translocation, Chr 11 and 16, Harwell 2 other 100526545 NR_037222 ENSMUSG00000092727 Mir3062 mir-3062|mmu-mir-3062 - 11 B3|11 42.26 cM microRNA 3062 ncRNA 105246124 XR_876123 Gm41464 - - 16 C1.2|16 predicted gene, 41464 ncRNA 78935 Mm.289866 NM_030233 ENSMUSG00000006763 Saal1 5031425D22Rik|SPACIA1 - 7|7 B3 serum amyloid A-like 1 protein-coding 13330 Del(9)63H Del63H - - deletion, Chr 9, Harwell 63 other 319702 Mm.403785 NR_126072 ENSMUSG00000089957 A830011K09Rik - - 6|6 G1 RIKEN cDNA A830011K09 gene ncRNA 620648 Gm6169 EG620648 - 13|13 D1 proteolipid protein 2 pseudogene pseudo 98309 AI317187 - - - expressed sequence AI317187 unknown 102640700 Gm36705 - - 14|14 predicted gene, 36705 ncRNA 492904 Ltsd2 - - 2 41.97 cM lung tumor shape-determining 2 unknown 111043197 Gm46995 - - 12|12 predicted gene 46995 pseudo 245469 Mm.103782 NM_001029868 ENSMUSG00000002006 Pdzd4 B230341P03|D130075J17Rik|Kiaa1444-hp|LU1|PDZRN4L|Pdzk4|Pdzrnk4l|Xlu - X|X A7.3 PDZ domain containing 4 protein-coding 100041932 Mm.484448 Gm3579 H3097D08 - 4 D2.3|4 predicted gene 3579 other 102632438 Mm.396141 XR_866432 Gm13709 - - 2 C3|2 43.62 cM predicted gene 13709 ncRNA 105244906 XR_872784 Gm40430 - - 12 C1|12 predicted gene, 40430 ncRNA 105246020 Mm.352910 NR_153785 Gm26760 - - 15 E3|15 predicted gene, 26760 ncRNA 100038347 Mm.425464 NM_001162532 ENSMUSG00000078670 Fam174b - - 7|7 D1 family with sequence similarity 174, member B protein-coding 109785 Mm.390201 NM_028352 ENSMUSG00000056131 Pgm3 2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3 - 9 E3.1|9 46.58 cM phosphoglucomutase 3 protein-coding 100043088 Mm.484991 NM_001167168 ENSMUSG00000096073 Vmn1r166 Gm4220 - 7 A3|7 vomeronasal 1 receptor 166 protein-coding 110418 Dxcp3 Dcp3 - - dexamethasone induced cleft palate 3 protein-coding 111445 Emv58 Emv-58 - - endogenous ecotropic MuLV 58 other 21284 T(9;12)20Ad T20Ad - - reciprocal translocation, Chr 9 and 12, Adler 20 other 668905 Gm9423 EG668905 - 3|3 H4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100416391 Gm18095 - - 15|15 F1 predicted gene, 18095 pseudo 105244582 XR_867731 Gm40174 - - 3 H2|3 predicted gene, 40174 ncRNA 93970 Mm.333431 NM_053153 Klra18 Ly49r - - killer cell lectin-like receptor, subfamily A, member 18 protein-coding 100418376 Gm17198 - - 12|12 E serine (or cysteine) preptidase inhibitor, clade A, member 1B pseudogene pseudo 629583 Gm6986 EG629583 - 14|14 D3 nuclear autoantigenic sperm protein (histone-binding) pseudogene pseudo 330513 Mm.67238 NM_177890 ENSMUSG00000053742 Gm5114 4921507A12|EG330513 - 7 B3|7 predicted gene 5114 protein-coding 105244358 Gm39982 - - 2|2 predicted gene, 39982 ncRNA 13317 Del(6)26H Del26H - - deletion, Chr 6, Harwell 26 other 100042203 Gm3719 - - 14|14 C1 predicted gene 3719 pseudo 14533 Mm.30118 NM_015740 ENSMUSG00000090247 Bloc1s1 AI839753|BLOS1|Gcn5l1 - 10 D3|10 77.19 cM biogenesis of lysosomal organelles complex-1, subunit 1 protein-coding 100416170 Gm3040 100040918 - 3|3 E1 predicted gene 3040 pseudo 228796 Mm.137570 NM_199303 ENSMUSG00000068009 Bpifb6 Bpil3|Gm119|Lplunc6 - 2|2 H1 BPI fold containing family B, member 6 protein-coding 107788 Tel1p - - - telomeric sequence, Chr 1, centromere end protein-coding 102636718 Gm29062 - - Y|Y predicted gene 29062 protein-coding 74906 4930478M09Rik - - - RIKEN cDNA 4930478M09 gene protein-coding 102638540 XR_869135 Gm35077 Gm44042 - 6 B3|6 predicted gene, 35077 ncRNA 233187 Mm.267027 NM_177693 ENSMUSG00000093639 Lim2 19kDa|4833403J20|MP19|To3 - 7 B3|7 28.25 cM lens intrinsic membrane protein 2 protein-coding 70397 Mm.194225 NM_026392 ENSMUSG00000025940 Tmem70 1110020A09Rik|2210416J16Rik - 1|1 A3 transmembrane protein 70 protein-coding 102637439 XR_382707 Gm34246 - - 13 C3|13 predicted gene, 34246 ncRNA 53685 D4Hrb1 D4Ham1 - - DNA segment, Chr 4, Harbers 1 unknown 105246592 XR_877903 Gm41862 - - 19 D2|19 predicted gene, 41862 ncRNA 100034851 Pcir5 - - - periosteal circumference 5 unknown 104053954 Rhox11-ps3 Gm14555 - X A3.3|X 22.35 cM reproductive homeobox 11, pseudogene 3 pseudo 100039934 Mm.474426 NM_001122734 ENSMUSG00000095621 Gm15085 - - X|X F3 predicted gene 15085 protein-coding 109432 Wt3q3 - - - body weight, 3 weeks, QTL 3 unknown 319397 D330004O07Rik - - 18|18 RIKEN cDNA D330004O07 gene protein-coding 380614 Mm.105309 NM_175515 ENSMUSG00000060798 Intu 9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284 - 3|3 B inturned planar cell polarity protein protein-coding 109752 Cat3 Cat-3|Vlm - - dominant cataract 3 protein-coding 268890 Mm.310524 NM_175548 ENSMUSG00000061080 Lsamp 5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp - 16|16 B4 limbic system-associated membrane protein protein-coding 84682 Mm.196668 NM_053091 ENSMUSG00000009876 Cox4i2 Cox4b|CoxIV-2 - 2|2 H1 cytochrome c oxidase subunit 4I2 protein-coding 108169076 XR_001784997 LOC108169076 - - 5 G2 uncharacterized LOC108169076 ncRNA 27821 504N12R - - - DNA segment, 504N12R (Research Genetics) unknown 626274 XM_003085268 Gm6660 EG626274 - X A5|X predicted gene 6660 protein-coding 116940 Mm.171323 NM_054089 ENSMUSG00000028233 Tgs1 D4Ertd800e|Ncoa6ip|Pimt - 4 A1|4 1.99 cM trimethylguanosine synthase 1 protein-coding 100040232 Gm9791 - - 3|3 A3 calcium regulated heat stable protein 1 pseudogene pseudo 619321 Mm.403007 NR_046017 ENSMUSG00000096938 9530052E02Rik - - 8 A1.1|8 RIKEN cDNA 9530052E02 gene ncRNA 100034956 Bmca - - 15 58.05 cM bile mucin accumulation unknown 14312 Mm.3444 NM_010238 ENSMUSG00000024335 Brd2 AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005 - 17 B1|17 17.98 cM bromodomain containing 2 protein-coding 102639844 XR_378561 Gm36062 - - 7 F3|7 predicted gene, 36062 ncRNA 109280048 LOC109280048 Mm414 - - VISTA enhancer mm414 biological-region 100039800 Gm2431 - - 7 F5|7 predicted gene 2431 pseudo 97651 Mm.394049 C80360 - - - expressed sequence C80360 unknown 278279 Mm.25225 NM_177368 ENSMUSG00000036019 Tmtc2 8430438D04Rik|D330034A10Rik - 10|10 D1 transmembrane and tetratricopeptide repeat containing 2 protein-coding 77760 A230106O10Rik - - X|X RIKEN cDNA A230106O10 gene protein-coding 105245572 XR_873712 Gm41012 - - 13 C3|13 predicted gene, 41012 ncRNA 100036455 Idd21.1 Idd21a - 18 50.7 cM insulin dependent diabetes susceptibility 21.1 unknown 100042023 Gm10193 - - 1 E2.1|1 predicted gene 10193 pseudo 102383 Mm.393590 AA408396 - - - expressed sequence AA408396 unknown 102642215 XR_882489 LOC102642215 - - - uncharacterized LOC102642215 ncRNA 100417363 Gm18562 - - 13|13 A1 ERO1-like beta pseudogene pseudo 666556 Gm8161 EG666556 - 14 C1|14 predicted gene 8161 pseudo 13252 Del(1)57H Del57H - - deletion, Chr 1, Harwell 57 other 108167318 XR_873258 Gm45936 - - 13 A3.3|13 predicted gene, 45936 ncRNA 11669 Mm.284446 NM_009656 ENSMUSG00000029455 Aldh2 AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5 - 5|5 F aldehyde dehydrogenase 2, mitochondrial protein-coding 75139 Mm.490931 NR_131193 ENSMUSG00000114472 Gm38397 - - 13|13 D2.2 predicted gene, 38397 ncRNA 320428 A130068F13Rik - - 18|18 RIKEN cDNA A130068F13 gene protein-coding 71186 Mm.449984 NR_045849 ENSMUSG00000097637 4933417D19Rik - - 8|8 E1 RIKEN cDNA 4933417D19 gene ncRNA 102636114 XR_378033 Gm33276 - - 6 F3|6 predicted gene, 33276 ncRNA 105246912 XR_880417 Gm42109 Gm43448 - 5 E1|5 predicted gene, 42109 ncRNA 218501 Gm4815 EG218501 - 13|13 D1 calponin 3, acidic pseudogene pseudo 100038967 XM_001471962 Gm1988 - - 7 B3|7 predicted gene 1988 protein-coding 105245710 XR_874482 Gm41118 - - 14 A3|14 predicted gene, 41118 ncRNA 51829 D13Abb2e - - - DNA segment, Chr 13, Abbott 2 expressed unknown 100170401 NM_001177525 EU599041 TU7 - 7 B3|7 28.25 cM expressed sequence EU599041 protein-coding 102633256 XR_882318 Gm21094 - - Y A2|Y predicted gene, 21094 ncRNA 259071 Mm.377822 NM_147068 ENSMUSG00000056822 Olfr166 MOR270-1 - 16|16 A3 olfactory receptor 166 protein-coding 102640414 Gm36479 - - 15|15 predicted gene, 36479 ncRNA 100415996 Gm14356 - - X|X A1.1 predicted gene 14356 pseudo 102637472 Gm34274 - - Y|Y predicted gene, 34274 ncRNA 102636453 XR_375819 Gm33513 - - 3 F1|3 predicted gene, 33513 ncRNA 21266 T(7;18)50H T50H - - reciprocal translocation, Chr 7 and 18, Harwell 50 other 436137 Gm5749 EG436137 - 8|8 A4 serine (or cysteine) peptidase inhibitor, clade B, member 6a pseudogene pseudo 100310837 Mm.483675 B930046C15Rik - - 14|14 RIKEN cDNA B930046C15 gene unknown 102640102 XR_876917 Gm36252 - - 17 E1.2|17 predicted gene, 36252 ncRNA 102637120 Gm34013 - - X|X predicted gene, 34013 pseudo 108441 Xmmv64 Xmmv-64|Xp-23 - - xenotropic-MCF leukemia virus 64 other 404594 Mm.442498 AL118430 - - - expressed sequence AL118430 unknown 67091 Mm.44213 NM_025960 ENSMUSG00000002043 Trappc6a 1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp - 7|7 A3 trafficking protein particle complex 6A protein-coding 102640249 XR_876239 Gm36363 - - 16 C3.3|16 predicted gene, 36363 ncRNA 83430 Mm.125482 NM_031252 ENSMUSG00000025383 Il23a IL-23|p19 - 10|10 D3 interleukin 23, alpha subunit p19 protein-coding 12484 Mm.29742 NM_009846 ENSMUSG00000047139 Cd24a Cd24|HSA|Ly-52|nectadrin - 10 B2|10 23.01 cM CD24a antigen protein-coding 102467573 n-TMcat1 n-Tm1 - - nuclear encoded tRNA methionine 1 (anticodon CAT) tRNA 105243911 Gm39630 - - 1|1 predicted gene, 39630 ncRNA 414075 Mm.241469 BC049265 - - 7 E3|7 cDNA sequence BC049265 unknown 242125 Mm.32900 NM_172295 ENSMUSG00000044313 Mab21l3 - - 3|3 F2.2 mab-21-like 3 (C. elegans) protein-coding 359856 DXMgc8 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 8 unknown 110180 Npp - - - nuclear posterior polar opacity unknown 664948 Gm7419 - - 8|8 B2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 pseudogene pseudo 69437 Mm.396186 XR_381365 1700020D12Rik - - 12|12 A2 RIKEN cDNA 1700020D12 gene ncRNA 671392 Gm9531 - - 9 E1|9 SET nuclear oncogene pseudogene pseudo 11899 Mm.329586 NM_007495 ENSMUSG00000026587 Astn1 Astn|GC14|mKIAA0289 - 1|1 H1 astrotactin 1 protein-coding 103912 Wo - - - wocko unknown 71385 Mm.440854 5430434G16Rik - - 15|15 RIKEN cDNA 5430434G16 gene protein-coding 14160 Mm.42103 NM_010195 ENSMUSG00000020140 Lgr5 FEX|Gpr49 - 10|10 D2 leucine rich repeat containing G protein coupled receptor 5 protein-coding 102638536 Gm28716 - - Y|Y predicted gene 28716 protein-coding 109279859 LOC109279859 Mm40 - - VISTA enhancer mm40 biological-region 387594 Mthfr-ps1 - - 5|5 D 5,10-methylenetetrahydrofolate reductase, pseudogene 1 pseudo 667617 Rps4x-ps EG667617|Gm8729 - 5|5 A1 Rps4x retrotransposed pseudogene pseudo 16612 Mm.142722 NM_010639 ENSMUSG00000063903 Klk1 0610007D04Rik|KAL-B|Kal|Klk1b6|Klk6|mGk-6 - 7 B3|7 28.74 cM kallikrein 1 protein-coding 102467553 n-TLcag1 n-Tl13 - 3 A3|3 nuclear encoded tRNA leucine 1 (anticodon CAG) tRNA 54364 Mm.277891 NM_019428 ENSMUSG00000024800 Rpp30 Rnasep2|TSG15 - 19|19 C2 ribonuclease P/MRP 30 subunit protein-coding 102635396 XR_380685 Gm32749 - - 10 C2|10 predicted gene, 32749 ncRNA 665865 Gm7833 EG665865 - 6 D2|6 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 73466 Mm.272723 NM_198224 ENSMUSG00000057240 Ms4a13 1700060E18Rik|Tetm4.2 - 19|19 A membrane-spanning 4-domains, subfamily A, member 13 protein-coding 546155 Gm5920 EG546155 - 9|9 E3.3 capping protein (actin filament) muscle Z-line, alpha 1 pseudogene pseudo 102636257 Mm.378425 Gm33374 - - 10|10 predicted gene, 33374 ncRNA 110712 Idd10 Idd-10 - - insulin dependent diabetes susceptibility 10 protein-coding 100416057 Gm17894 - - 19|19 C1 THO complex 3 pseudogene pseudo 235567 Mm.217256 NM_001163026 ENSMUSG00000032560 Dnajc13 D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678 - 9|9 F1 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 100775177 Ighv8-16 - - 12 F2|12 immunoglobulin heavy variable V8-16 pseudo 62828 D13Mit232 - - - DNA segment, Chr 13, Massachusetts Institute of Technology 232 unknown 442800 Mm.491659 NM_001002769 D430018E03Rik - - 5|5 G2 RIKEN cDNA D430018E03 gene unknown 67927 Mm.394490 NR_027883 ENSMUSG00000099630 1700096J18Rik - - 11|11 E1 RIKEN cDNA 1700096J18 gene ncRNA 102640554 XR_001779130 Gm36590 - - 9 A5.1|9 predicted gene, 36590 ncRNA 667518 Gm8680 EG667518 - 13|13 D1 predicted gene 8680 pseudo 102633270 XR_384254 Gm31134 - - 15 E1|15 predicted gene, 31134 ncRNA 15006 Mm.466882 NM_010390 ENSMUSG00000079507 H2-Q1 H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1 - 17 B1|17 18.63 cM histocompatibility 2, Q region locus 1 protein-coding 110835 Mm.103778 NM_176844 ENSMUSG00000035594 Chrna5 Acra-5|Acra5 - 9 B|9 29.84 cM cholinergic receptor, nicotinic, alpha polypeptide 5 protein-coding 105243268 XR_879139 Gm39236 - - 8 D2|8 predicted gene, 39236 ncRNA 102633994 XR_376977 Gm31684 - - 5 C3.1|5 predicted gene, 31684 ncRNA 102635409 XR_387298 4921525D07Rik - - 1|1 E2.1 RIKEN cDNA 4921525D07 gene ncRNA 100125243 Vmn2r-ps112 - - 16 C4|16 vomeronasal 2, receptor, pseudogene 112 pseudo 791312 Mm.437501 Gm9997 - - 12 C2|12 predicted gene 9997 protein-coding 100035526 Kcal2 - - - kilocalorie 2 unknown 245576 Gm4993 EG245576 - X|X E2 phosphoribosyl pyrophosphate synthetase-associated protein 2 pseudogene pseudo 11849 Rhoay-ps1 Arhay-ps1|RhoAy1 - Y|Y A1 ras homolog A translocated to the Y, pseudogene 1 pseudo 625349 XR_391236 Gm6579 EG625349|Gm44918 - 7|7 B1 predicted gene 6579 unknown 105776 AI115024 - - - expressed sequence AI115024 unknown 100036180 Bmd35 Bmd28 - - bone mineral density 35 unknown 21198 T(5;11)17Ad T17Ad - - reciprocal translocation, Chr 5 and 11, Adler 17 other 71719 1200003I10Rik - - - RIKEN cDNA 1200003I10 gene protein-coding 102633381 XR_382346 Gm31217 - - 13 A5|13 predicted gene, 31217 ncRNA 104218 Dtc1 Dtc-1|tra-1 - - detected by T cells 1 protein-coding 100416673 Gm18184 - - 1|1 G3 zinc finger protein 799 pseudogene pseudo 633354 Gm14470 - - X|X A1.1 lactate dehydrogenase A pseudogene pseudo 100462962 Gm11689 - - 11 E2|11 79.82 cM mitochondrial ribosomal protein S36 pseudogene pseudo 100862207 Gm21560 - - 14|14 predicted gene, 21560 ncRNA 110595 Mm.255607 NM_080639 ENSMUSG00000030317 Timp4 Timp-4 - 6 E3|6 53.29 cM tissue inhibitor of metalloproteinase 4 protein-coding 62844 D12Mit214 - - 12 37.86 cM DNA segment, Chr 12, Massachusetts Institute of Technology 214 unknown 108168134 n-TSaga5 Trnas-aga|n-Ts5 - 13 A3.1|13 nuclear encoded tRNA serine 5 (anticodon AGA) tRNA 102465905 NR_106200 ENSMUSG00000098944 Mir8120 Gm27637|mmu-mir-8120 - 3|3 E1 microRNA 8120 ncRNA 102638339 Gm34927 - - Y|Y predicted gene, 34927 pseudo 75764 Mm.280573 NM_029420 ENSMUSG00000059772 Slx1b 1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2 - 7|7 F3 SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae) protein-coding 791353 Mm.484430 Gm9931 - - - predicted gene 9931 unknown 19122 Mm.648 NM_011170 ENSMUSG00000079037 Prnp AA960666|AI325101|CD230|PrP|PrP|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C - 2 F2|2 64.07 cM prion protein protein-coding 105243279 XR_879159 Gm39243 - - 8 D3|8 predicted gene, 39243 ncRNA 408078 D6Wum25 - - - DNA segment, Chr 6, Washington University School of Medicine 25 unknown 381353 Mm.379511 NM_001005424 ENSMUSG00000029419 Gm996 Ajm1 - 2|2 A3 predicted gene 996 protein-coding 100041183 Gm3186 - - 11|11 A1 predicted gene 3186 pseudo 78024 4930543K20Rik - - 10|10 RIKEN cDNA 4930543K20 gene protein-coding 74456 Mm.391075 NR_045372 4933424G05Rik - - 18|18 A1 RIKEN cDNA 4933424G05 gene ncRNA 110120488 LOC110120488 - - - VISTA enhancer mm1574 biological-region 114152 Axtav - - - anxiety-avoidance behavior unknown 27612 D0Hgu3 - - - DNA segment, Human Genetics Unit 3 unknown 108168091 XR_001780980 Gm46421 - - 13 B3|13 predicted gene, 46421 ncRNA 404339 Mm.391192 NM_207575 ENSMUSG00000095484 Olfr1480 MOR202-44 - 19|19 A olfactory receptor 1480 protein-coding 276950 Mm.491599 NM_181545 ENSMUSG00000035208 Slfn8 - - 11|11 C schlafen 8 protein-coding 231093 Mm.440364 NM_174849 ENSMUSG00000029165 Agbl5 9430057O19Rik|CCP5 - 5|5 B1 ATP/GTP binding protein-like 5 protein-coding 24078 Mm.350840 Tcra-V22.1 - - - T cell receptor alpha, variable 22.1 other 85107 D12Mit43 - - - DNA segment, Chr 12, Massachusetts Institute of Technology 43 unknown 108167849 XR_001780092 Gm46252 - - 11 B5|11 predicted gene, 46252 ncRNA 230126 Mm.251716 NM_001033306 ENSMUSG00000044813 Shb BC028832 - 4|4 B1 src homology 2 domain-containing transforming protein B protein-coding 66489 Mm.345333 NM_025592 ENSMUSG00000062997 Rpl35 2410039E09Rik - 2|2 B ribosomal protein L35 protein-coding 14863 Mm.440086 NM_008183 ENSMUSG00000040562 Gstm2 Gstb-2|Gstb2 - 3|3 F2.3 glutathione S-transferase, mu 2 protein-coding 100417750 Gm18805 - - 7|7 D1 isopentenyl-diphosphate delta isomerase pseudogene pseudo 258815 Mm.377704 NM_146818 ENSMUSG00000075105 Olfr1218 MOR233-12 - 2|2 E1 olfactory receptor 1218 protein-coding 70141 2210414I22Rik - - 2|2 RIKEN cDNA 2210414I22 gene protein-coding 110072 Pad4 - - - MMTV LTR integration site 4 protein-coding 110583 Tcra-V11.2 AV11S2|Va11.2|Va11.2b - - T cell receptor alpha, variable 11.2 other 667975 Gm8907 EG667975 - 9 A5.3|9 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 628324 Mm.33816 NM_001195760 ENSMUSG00000094018 S100a2 CaN19|EG628324|S100L - 3|3 F1 S100 calcium binding protein A2 protein-coding 100417288 Gm18506 - - 1|1 E2.1 ubiquitin specific peptidase 7 pseudogene pseudo 62382 D14Mit112 - - 14 16.09 cM DNA segment, Chr 14, Massachusetts Institute of Technology 112 unknown 407793 Mm.260950 NR_040670 BC039966 - - 4|4 E2 cDNA sequence BC039966 ncRNA 100502924 Mm.331671 NM_001081645 Gm38423 Gm11237 - 4|4 C3 predicted gene, 38423 protein-coding 103957 Tyl - - - trembly-like unknown 102639633 Gm12740 - - 4|4 50.43 cM predicted gene 12740 pseudo 218832 Mm.343610 NM_183157 ENSMUSG00000025280 Polr3a 9330175N20Rik|BC053071|RPC1|RPC155 - 14|14 A3 polymerase (RNA) III (DNA directed) polypeptide A protein-coding 108068 Mm.410822 NM_001160353 ENSMUSG00000023192 Grm2 4930441L02Rik|Gprc1b|mGluR2|mGluR7 - 9|9 F1 glutamate receptor, metabotropic 2 protein-coding 385234 Mm.386927 XR_168527 Gm5376 EG385234 - 14|14 B predicted gene 5376 ncRNA 387216 NR_029740 ENSMUSG00000065611 Mir23a Mirn23a|mir-23a|mmu-mir-23a - 8|8 C2 microRNA 23a ncRNA 60981 D17Mit7 - - 17 27.85 cM DNA segment, Chr 17, Massachusetts Institute of Technology 7 unknown 102640504 XR_391975 ENSMUSG00000101740 Gm29360 - - Y B|Y predicted gene 29360 ncRNA 552902 Mm.441982 LOC552902 - - - uncharacterized LOC552902 unknown 110037 Agp2 Agp-2 - - anti gp70 immune complex 2 protein-coding 109433675 LOC109433675 - - - Bmp4 promoter region biological-region 67212 Mm.282694 NM_026035 ENSMUSG00000036860 Mrpl55 2810038N09Rik|L55mt|MRP-L55 - 11|11 B1.3 mitochondrial ribosomal protein L55 protein-coding 320924 Mm.442049 NM_178793 ENSMUSG00000046318 Ccbe1 4933426F18Rik|9430093N24Rik|mKIAA1983 - 18|18 E1 collagen and calcium binding EGF domains 1 protein-coding 102634304 XR_874558 LOC102634304 - - 14 C1 uncharacterized LOC102634304 ncRNA 102640767 Gm29424 - - Y|Y predicted gene 29424 protein-coding 320266 D130060J02Rik - - 4|4 A1 RIKEN cDNA D130060J02 gene unknown 100039466 Gm2253 - - 8|8 C1 ribosomal protein L28 pseudogene pseudo 102632305 XR_378805 4930413E20Rik - - 8|8 A2 RIKEN cDNA 4930413E20 gene ncRNA 27778 03B03R - - - DNA segment, 03B03R (Research Genetics) unknown 432438 Gm5421 EG432438 - 10|10 A3 aconitase 2, mitochondrial pseudogene pseudo 791357 Mm.39442 Gm9982 - - - predicted gene 9982 unknown 66994 Mm.22990 NM_025892 ENSMUSG00000035790 Cep19 1500031L02Rik|AI428934|AL022620 - 16|16 B2 centrosomal protein 19 protein-coding 320191 Mm.334464 NM_207659 ENSMUSG00000037234 Hook3 5830454D03Rik|AI317159|E330005F07Rik - 8|8 A2 hook microtubule tethering protein 3 protein-coding 258501 Mm.156991 NM_146508 ENSMUSG00000059366 Olfr959 M34|MOR224-3|ORL583 - 9|9 A5.1 olfactory receptor 959 protein-coding 108169138 XR_001785220 Gm46957 - - 6 B1|6 predicted gene, 46957 ncRNA 399590 C230011H18Rik - - - RIKEN cDNA C230011H18 gene protein-coding 110528 Prdx2-rs2 - - - peroxiredoxin 2, related sequence 2 protein-coding 108169036 XR_001784835 Gm46907 - - 5 B1|5 predicted gene, 46907 ncRNA 667882 NM_001033494 Usp17le-ps Usp-ps|Usp17|Usp17-3 - 7|7 E3 ubiquitin specific peptidase 17-like E, pseudogene pseudo 105242601 Gm38769 - - 6|6 predicted gene, 38769 ncRNA 56407 Mm.234944 NM_019828 ENSMUSG00000038324 Trpc4ap 4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss - 2 H1|2 77.26 cM transient receptor potential cation channel, subfamily C, member 4 associated protein protein-coding 14913 Mm.16224 NM_008189 ENSMUSG00000023982 Guca1a GC-A|Gcap1|Guca1|mGCAP1 - 17|17 C guanylate cyclase activator 1a (retina) protein-coding 100114902 Trdd1 Gm16623 - 14|14 C2 T cell receptor delta diversity 1 other 75328 Mm.72970 NM_029252 ENSMUSG00000051728 4930563D23Rik - - 16|16 C4 RIKEN cDNA 4930563D23 gene protein-coding 54338 Mm.103581 NM_018824 ENSMUSG00000027340 Slc23a2 AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238 - 2|2 F2 solute carrier family 23 (nucleobase transporters), member 2 protein-coding 56335 Mm.271759 NM_019721 ENSMUSG00000022160 Mettl3 2310024F18Rik|M6A|Spo8 - 14|14 C2 methyltransferase like 3 protein-coding 102633306 XR_388209 Gm31165 - - 8 E2|8 predicted gene, 31165 ncRNA 107569 Mm.158936 NM_026004 ENSMUSG00000029780 Nt5c3 1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36 - 6|6 B3 5'-nucleotidase, cytosolic III protein-coding 100036396 Vmmt11 - - - vertebral morphology and mechanical traits 11 unknown 102637307 XR_384434 Gm34152 - - 15 F1|15 predicted gene, 34152 ncRNA 105243612 XR_880325 Gm39478 - - 11 E2|11 predicted gene, 39478 ncRNA 66857 Mm.3311 NM_025806 ENSMUSG00000030214 Plbd1 1100001H23Rik - 6|6 G1 phospholipase B domain containing 1 protein-coding 100316777 NR_035495 ENSMUSG00000088248 Mir1969 mir-1969|mmu-mir-1969 - 8 B3.3|8 34.43 cM microRNA 1969 ncRNA 15169 hcp - - - hypochondrodysplasia unknown 61241 D3Mit1004 D1Mit280 - 3 59.45 cM DNA segment, Chr 3, Massachusetts Institute of Technology 1004 unknown 101056063 Gm29656 - - Y|Y predicted gene 29656 protein-coding 76193 Mm.482634 6330562C20Rik Gm10691 - 3|3 RIKEN cDNA 6330562C20 gene unknown 100312510 Vmn1r-ps64 - - 7|7 A1 vomeronasal 1 receptor, pseudogene 64 pseudo 108167804 XR_001779754 Gm46220 - - 10 B1|10 predicted gene, 46220 ncRNA 268300 Gm5040 EG268300 - 10|10 B3 ribosomal protein L7A pseudogene pseudo 62195 D15Mit65 - - 15 29.03 cM DNA segment, Chr 15, Massachusetts Institute of Technology 65 unknown 77118 Mm.484594 6720490N10Rik - - - RIKEN cDNA 6720490N10 gene protein-coding 16880 Mm.149720 NM_013584 ENSMUSG00000054263 Lifr A230075M04Rik|AW061234|LIF - 15 A1|15 3.46 cM leukemia inhibitory factor receptor protein-coding 327800 Mm.374657 B930071A02 - - 10|10 C2 uncharacterized protein B930071A02 protein-coding 65257 Mm.440539 NM_023906 ENSMUSG00000020305 Asb3 2400011J03Rik|Asb-3 - 11 A4|11 18.19 cM ankyrin repeat and SOCS box-containing 3 protein-coding 100093646 Trnav-aac - - - transfer RNA valine (anticodon AAC) tRNA 100125260 Trbj2-6 Gm17602 - 6|6 B1 T cell receptor beta joining 2-6 pseudo 101055899 LOC101055899 - - X A1.1 nucleolar protein 56 pseudogene pseudo 628456 Mm.455664 NM_001099305 ENSMUSG00000079536 Gm6880 EG628456 - X|X A7.3 predicted gene 6880 protein-coding 72278 Mm.268475 NM_028181 ENSMUSG00000034563 Ccpg1 1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e - 9 D|9 40.08 cM cell cycle progression 1 protein-coding 101055874 Gm29737 - - 12 A1.2|12 predicted gene, 29737 pseudo 102639618 Gm35885 - - 2|2 predicted gene, 35885 ncRNA 68758 Mm.389700 NM_145215 ENSMUSG00000040532 Abhd11 1110054D16Rik|A630008N09Rik|Wbscr21 - 5|5 G2 abhydrolase domain containing 11 protein-coding 381217 Mm.426078 NM_001114174 ENSMUSG00000071604 Fam189a2 AI414343|AI666772|Gm967 - 19|19 B family with sequence similarity 189, member A2 protein-coding 52444 D4Ertd804e - - 4 55.53 cM DNA segment, Chr 4, ERATO Doi 804, expressed unknown 668701 Gm9309 EG668701 - 12|12 A1.3 predicted gene 9309 pseudo 109279851 LOC109279851 Mm10 - - VISTA enhancer mm10 biological-region 109625 Es18 Es-18 - - esterase 18 protein-coding 20512 Mm.204834 NM_148938 ENSMUSG00000005360 Slc1a3 AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1 - 15 A1|15 3.82 cM solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein-coding 100042056 Mm.448157 NM_198118 ENSMUSG00000073067 9130019P16Rik 6430501H15Rik - 6 B3|6 RIKEN cDNA 9130019P16 gene ncRNA 66405 Mm.440291 NM_025543 ENSMUSG00000042814 Mcts2 2400002F11Rik|MCT-2 - 2|2 H1 malignant T cell amplified sequence 2 protein-coding 114163 Cons3 - - - consumption-saccharin intake 3 unknown 102634743 XR_385562 Gm32252 - - 17 B1|17 predicted gene, 32252 ncRNA 56224 Mm.31927 NM_019571 ENSMUSG00000028152 Tspan5 2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9 - 3|3 H1 tetraspanin 5 protein-coding 627375 XR_873085 Gm6750 - - 12 F2|12 predicted gene 6750 pseudo 664900 Gm16518 - - 11|11 A1 nucleolar and spindle associated protein 1 pseudogene pseudo 110120410 LOC110120410 - - - VISTA enhancer mm570 biological-region 244666 Mm.482915 NM_001111141 ENSMUSG00000031986 Sprtn Gm505 - 8|8 E2 SprT-like N-terminal domain protein-coding 381286 Mm.337362 NM_201363 ENSMUSG00000073601 Serpinb3c 1110001H02Rik|1110013A16Rik|Scca2|Serpinb4 - 1|1 E2.1 serine (or cysteine) peptidase inhibitor, clade B, member 3C protein-coding 100504409 Gm15358 - - 8|8 10.35 cM f-box/SPRY domain-containing protein 1-like pseudo 56473 Mm.38901 NM_019699 ENSMUSG00000024665 Fads2 2900042M13Rik|Fadsd2 - 19|19 A fatty acid desaturase 2 protein-coding 71519 Mm.473179 NM_027816 ENSMUSG00000027983 Cyp2u1 8430436A10Rik - 3|3 G3 cytochrome P450, family 2, subfamily u, polypeptide 1 protein-coding 257958 Mm.377315 NM_212436 ENSMUSG00000061549 Olfr301 MOR211-8P|MOR221-1P|MOR221-4|Olfr1531-ps1 - 7|7 D3 olfactory receptor 301 protein-coding 74161 Mm.208098 NR_040321 ENSMUSG00000087382 Ctcflos 1300015D01Rik|A530094K13 - 2|2 H3 CCCTC-binding factor (zinc finger protein)-like, opposite strand ncRNA 61010 D4Mit211 - - 4 10.32 cM DNA segment, Chr 4, Massachusetts Institute of Technology 211 unknown 73407 Mm.472783 NM_028532 ENSMUSG00000090206 Tepp 1700055M20Rik - 8|8 C5 testis, prostate and placenta expressed protein-coding 213119 Mm.32741 NM_001081053 ENSMUSG00000090210 Itga10 A630048L14 - 3|3 F2.1 integrin, alpha 10 protein-coding 19842 NR_004411 ENSMUSG00000095969 Rnu1a1 Rnu1a-1 - 11 C|11 U1a1 small nuclear RNA snRNA 110386946 LOC110386946 - - - Cyp19a1 promoter I.f biological-region 57764 Mm.483868 NM_021320 ENSMUSG00000020019 Ntn4 - - 10|10 C2 netrin 4 protein-coding 100035870 Obwq5 - - 19 56.28 cM obesity and body weight QTL 5 unknown 97902 Mm.394364 Gm11381 C87011 - - predicted gene 11381 protein-coding 53752 D9Ncvs53 Irlgs3 - - DNA segment, Chr 9, National Cardiovascular Center, Shionogi 53 unknown 77216 A930002H02Rik - - 7|7 RIKEN cDNA A930002H02 gene protein-coding 107509 Sdr1 Sdr-1 - - serine dehydratase regulator 1 protein-coding 21909 Mm.37 NM_009392 ENSMUSG00000068327 Tlx2 Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2 - 6 C3|6 35.94 cM T cell leukemia, homeobox 2 protein-coding 100101486 Trav10d - - 14|14 C2 T cell receptor alpha variable 10D other 70876 Mm.158475 XR_384906 4921517D16Rik - - 16|16 C1.1 RIKEN cDNA 4921517D16 gene ncRNA 633570 Gm7117 EG633570 - X|X D predicted pseudogene 7117 protein-coding 62132 D13Mit52 - - 13 30.85 cM DNA segment, Chr 13, Massachusetts Institute of Technology 52 unknown 29869 Mm.162025 NM_013881 ENSMUSG00000004798 Ulk2 A830085I22Rik|AU015340|Unc51.2|mKIAA0623 - 11|11 B2 unc-51 like kinase 2 protein-coding 102634535 XR_383452 Gm32092 - - 14 C3|14 predicted gene, 32092 ncRNA 108168485 LOC108168485 - - X A1.3 40S ribosomal protein SA pseudogene pseudo 211578 Mm.370299 NM_203490 ENSMUSG00000051207 Mrgprd Gm499|Mgrd|MrgD|TGR7 - 7|7 F5 MAS-related GPR, member D protein-coding 102636211 Gm28179 - - Y|Y predicted gene 28179 ncRNA 104884 Mm.312323 NM_028354 ENSMUSG00000021177 Tdp1 2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1 - 12|12 E tyrosyl-DNA phosphodiesterase 1 protein-coding 19662 Mm.2605 NM_011255 ENSMUSG00000024990 Rbp4 Rbp-4 - 19 C2|19 32.75 cM retinol binding protein 4, plasma protein-coding 21312 T(X;7)18Rl T18Rl - - reciprocal translocation, Chr X and 7, Russell 18 other 102631947 Mm.416998 XR_387047 ENSMUSG00000084963 Gm14936 - - X E1|X 48.94 cM predicted gene 14936 ncRNA 105246742 XR_878650 Gm41984 - - 2 H4|2 predicted gene, 41984 ncRNA 73874 Mm.444676 NR_040595 ENSMUSG00000087625 4930419G24Rik - - 3|3 A3 RIKEN cDNA 4930419G24 gene ncRNA 76857 Mm.276415 NM_029773 ENSMUSG00000026771 Spopl 4921517N04Rik|AU014935|BB233739|E430033K04Rik - 2|2 A3 speckle-type POZ protein-like protein-coding 546144 Mm.335289 NM_177908 ENSMUSG00000044976 Wdr72 AW558070|D230040E23 - 9|9 D WD repeat domain 72 protein-coding 100035314 Gwth1 - - 1 58.18 cM growth traits 1 unknown 108168467 XM_017318672 Gm46683 - - X A3.2|X predicted gene, 46683 protein-coding 26366 Mm.30300 NM_007675 ENSMUSG00000054169 Ceacam10 Bgp3|Cea10 - 7 A3|7 12.78 cM carcinoembryonic antigen-related cell adhesion molecule 10 protein-coding 109279917 LOC109279917 Mm165 - - VISTA enhancer mm165 biological-region 100417390 Gm18585 - - 9|9 A4 ADP-ribosylation factor-like 4A pseudogene pseudo 102640883 XR_878708 Gm36841 - - 5 F|5 predicted gene, 36841 ncRNA 105246725 XR_878600 Gm41967 - - 1 G1|1 predicted gene, 41967 ncRNA 622870 Gm6366 EG622870 - 5|5 E1 predicted gene 6366 pseudo 16186 Mm.2923 NM_013563 ENSMUSG00000031304 Il2rg CD132|[g]c|gamma(c)|gc|p64 - X D|X 43.9 cM interleukin 2 receptor, gamma chain protein-coding 360067 D17Jcs22 - - - DNA segment, Chr 17, John C. Schimenti 22 unknown 102635502 Mm.391961 LOC102635502 - - - uncharacterized LOC102635502 ncRNA 16217 In(1)1Icg-p In(1)1Icg|In1Icg - - inversion, Chr 1, Inst of Cytology and Genetics Novosibirsk 1, proximal other 102642884 LOC102642884 - - - cytochrome c oxidase subunit 7C, mitochondrial protein-coding 223499 Mm.321937 NM_198606 ENSMUSG00000022300 Dcaf13 Gm83|Wdsof1 - 15|15 B3.1 DDB1 and CUL4 associated factor 13 protein-coding 75350 Mm.445907 4930552F14Rik - - 16|16 RIKEN cDNA 4930552F14 gene protein-coding 100041413 Mm.6250 NM_001039225 Gm16401 EG624120 - 5|5 B3 predicted gene 16401 ncRNA 217826 Mm.312335 NM_146037 ENSMUSG00000045404 Kcnk13 BB085247|F730021E22Rik|Gm1570|Gm1685 - 12|12 E potassium channel, subfamily K, member 13 protein-coding 19253 Mm.361 NM_011206 ENSMUSG00000026126 Ptpn18 FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1 - 1 B|1 13.25 cM protein tyrosine phosphatase, non-receptor type 18 protein-coding 667138 Gm15779 EG667138 - 6 G3|6 predicted gene 15779 pseudo 53736 D3Byu17 D0Byu17 - - DNA segment, Chr 3, Brigham Young University 17 unknown 664880 Gm14336 - - 2|2 H4 predicted gene 14336 pseudo 74399 Mm.482575 NR_033485 Duxf3 4933403O03Rik - 10|10 B4 double homeobox family member 3 unknown 81842 Ierepo2 FM3 - - immediate early response, erythropoietin 2 protein-coding 668952 Gm14234 - - 2|2 H3 ribosomal protein S2 pseudogene pseudo 382019 Mm.251482 NM_001166645 ENSMUSG00000089857 Zfp882 Gm15468 - 8 B3.3|8 zinc finger protein 882 protein-coding 383211 Gm5223 EG383211 - 17 A3.1|17 predicted gene 5223 pseudo 545808 Rps2-ps5 EG545808|Gm5872 - 14|14 D2 ribosomal protein S2, pseudogene 5 pseudo 78145 7330404K18Rik - - 14|14 RIKEN cDNA 7330404K18 gene protein-coding 70993 Mm.486561 NM_027640 ENSMUSG00000048400 Prss54 4931432M23Rik|Klkbl4 - 8|8 C5 protease, serine 54 protein-coding 436579 D5Mit286 - - 5 89.3 cM DNA segment, Chr 5, Massachusetts Institute of Technology 286 unknown 100042077 Gm10251 - - 14|14 A1 predicted gene 10251 protein-coding 108168552 XM_017318745 ENSMUSG00000100055 LOC108168552 - - Y A2 X-linked lymphocyte-regulated protein PM1-like protein-coding 433328 Gm5530 EG433328 - 1|1 C5 phospholipid scramblase 1 pseudogene pseudo 102637386 XR_390479 Gm34213 - - 4 A5|4 predicted gene, 34213 ncRNA 109280081 LOC109280081 Mm764 - - VISTA enhancer mm764 biological-region 105243699 LOC105243699 - - X C1 replication protein A 14 kDa subunit pseudogene pseudo 108168726 XM_017319361 LOC108168726 - - 2 A1 uncharacterized LOC108168726 protein-coding 105243853 XR_865166 Gm39585 - - 1 A1|1 predicted gene, 39585 ncRNA 75228 Mm.381990 4930546B01Rik - - 12|12 RIKEN cDNA 4930546B01 gene protein-coding 105243923 XR_865416 Gm39640 - - 1 C1.1|1 predicted gene, 39640 ncRNA 100504053 Gm13788 - - 2 E1|2 52.01 cM zinc finger protein 82-like pseudo 13019 Mm.389954 NM_007795 ENSMUSG00000042340 Ctf1 CT-1 - 7|7 F3 cardiotrophin 1 protein-coding 100502599 Mm.484152 Gm19274 - - 8|8 23.05 cM predicted gene, 19274 unknown 100312494 Vmn1r-ps35 - - 6 D1|6 40.5 cM vomeronasal 1 receptor, pseudogene 35 pseudo 105247297 XM_017318979 LOC105247297 - - - zinc finger protein OZF-like protein-coding 100040407 Gm2756 - - 3 D|3 predicted gene 2756 pseudo 664844 Gm7365 - - X A2|X predicted gene 7365 protein-coding 666577 Gm8172 EG666577 - X|X A7.2 ribosomal protein S6 pseudogene pseudo 100041749 XR_106345 ENSMUSG00000091827 Speer4f2 100041832|Gm3495|Gm3535 - 5 A3|5 spermatogenesis associated glutamate (E)-rich protein 4f2 unknown 19428 Mm.322186 NM_009028 ENSMUSG00000083649 Rasl2-9 M2|Ran|Ran/M2|Rasl2-9-ps - 7|7 A1 RAS-like, family 2, locus 9 protein-coding 109644 Chol2 - - 6 6.68 cM cholesterol 2 unknown 108171 As2-ps1 - - - arylsulfatase A pseudogene 1 pseudo 18095 Mm.3520 NM_010921 ENSMUSG00000022061 Nkx3-1 Bax|NKX3.1|NKX3A|Nkx-3.1|bagpipe - 14 D2|14 36.02 cM NK3 homeobox 1 protein-coding 100534333 Gm21031 - - 1|1 H3 predicted gene, 21031 pseudo 230752 Mm.41569 NM_172145 ENSMUSG00000050212 Eva1b 2610027C15Rik|Fam176b - 4|4 D2.2 eva-1 homolog B (C. elegans) protein-coding 71492 Mm.286187 NM_027810 ENSMUSG00000037325 Bbs7 8430406N16Rik - 3|3 B Bardet-Biedl syndrome 7 (human) protein-coding 72542 Mm.61682 NM_028273 ENSMUSG00000029500 Pgam5 2610528A17Rik - 5|5 F phosphoglycerate mutase family member 5 protein-coding 106299 AL023045 - - - expressed sequence AL023045 unknown 271887 Mm.246640 NM_173031 ENSMUSG00000038980 Rbbp8nl 4732416F18 - 2|2 H4 RBBP8 N-terminal like protein-coding 74090 Mm.273267 NM_028748 ENSMUSG00000032278 Paqr5 0610010I15Rik|AV002411|BB115488|mPRg - 9|9 B progestin and adipoQ receptor family member V protein-coding 100500713 Mm.396609 NR_045916 ENSMUSG00000097197 9530027J09Rik - - X A5|X RIKEN cDNA 9530027J09 gene ncRNA 100038443 Mm.259876 9330195I24Rik - - - RIKEN cDNA 9330195I24 gene unknown 100504200 XM_003084992 ENSMUSG00000091814 Gm8050 666329 - 14 A1|14 4.0 cM predicted gene 8050 protein-coding 99797 AU019157 - - - expressed sequence AU019157 unknown 52713 Mm.339224 NM_025602 ENSMUSG00000019897 Ccdc59 2300004H16Rik|D10Ertd718e - 10 D1|10 55.12 cM coiled-coil domain containing 59 protein-coding 387352 Mm.377913 NM_207027 ENSMUSG00000059410 Tas2r125 T2R26|Tas2r25|mGR25|mt2r59 - 6 G1|6 64.03 cM taste receptor, type 2, member 125 protein-coding 53357 Mm.155620 NM_016915 ENSMUSG00000042632 Pla2g6 BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta - 15|15 E1 phospholipase A2, group VI protein-coding 72354 Mm.25806 NM_028209 ENSMUSG00000025413 Ttc4 2810002P21Rik|AF007005|L62 - 4|4 C7 tetratricopeptide repeat domain 4 protein-coding 85155 D1Mit308 - - 1 50.78 cM DNA segment, Chr 1, Massachusetts Institute of Technology 308 unknown 627788 NM_001177391 Gm6788 EG627788 - 19|19 C1 dynein family member pseudo 62538 D11Mit177 - - 11 40.42 cM DNA segment, Chr 11, Massachusetts Institute of Technology 177 unknown 20681 Mm.258220 NM_011447 ENSMUSG00000024176 Sox8 - - 17 A3.3|17 12.69 cM SRY (sex determining region Y)-box 8 protein-coding 111526 Tcra-V4 - - - T cell receptor alpha, variable 4 other 105243264 XR_879130 Gm39232 Gm45595 - 8 D1|8 predicted gene, 39232 ncRNA 14027 Mm.293683 NM_025276 ENSMUSG00000034282 Evpl - - 11|11 E2 envoplakin protein-coding 434064 Mm.371796 NR_026990 ENSMUSG00000084950 Gm5577 EG434064 - 6|6 D1 predicted gene 5577 ncRNA 232187 Mm.219946 NM_144918 ENSMUSG00000033706 Smyd5 AW536703|NN8-4AG|Rai15|Rrg1 - 6 C3|6 37.44 cM SET and MYND domain containing 5 protein-coding 102639373 Mm.402321 XR_387267 Gm28382 - - 1 D|1 predicted gene 28382 ncRNA 109959 Mm.275426 NM_001042711 ENSMUSG00000074268 Amy2a5 1810008N23Rik|Amy-2|Amy2|mAmy2-2 - 3 F3|3 49.35 cM amylase 2a5 protein-coding 108168480 XR_001782833 Gm46686 - - X E3|X predicted gene, 46686 ncRNA 102635741 XR_865983 Gm33002 - - 2 A3|2 predicted gene, 33002 ncRNA 69659 Mm.352401 NR_040309 ENSMUSG00000060530 2310069G16Rik - - 15|15 B3.2 RIKEN cDNA 2310069G16 gene ncRNA 108168880 XR_001783920 Gm46812 - - 3 F1|3 predicted gene, 46812 ncRNA 100043885 Mm.127562 NR_033456 Gm4710 - - 17 E2|17 predicted gene 4710 ncRNA 68922 Mm.79127 NM_175138 ENSMUSG00000061322 Dnaic1 1110066F04Rik|BB124644|Dnai1|b2b1526Clo - 4|4 A5 dynein, axonemal, intermediate chain 1 protein-coding 109136574 LOC109136574 - - - CR2 enhancer downstream of Fgf8 biological-region 105243385 XR_870670 Gm39321 - - 9 A5.1|9 predicted gene, 39321 ncRNA 384782 Rps16-ps3 EG384782|Gm5344 - 8|8 A1.1 ribosomal protein S16, pseudogene 3 pseudo 320788 9930104M19Rik - - 13|13 RIKEN cDNA 9930104M19 gene protein-coding 102635921 XR_386882 Gm33135 - - X A1.1|X predicted gene, 33135 ncRNA 61213 D1Mit181 - - 1 38.54 cM DNA segment, Chr 1, Massachusetts Institute of Technology 181 unknown 16255 In(15)4H-d In(15)4H|In4H - - inversion, Chr 15, Harwell 4, distal other 53676 DYByu1 D0Byu1 - - DNA segment, Chr Y, Brigham Young University 1 unknown 492970 Hdlq21 - - 3 43.71 cM HDL QTL 21 unknown 108168998 XR_001784536 Gm46886 - - 4 C3|4 predicted gene, 46886 ncRNA 109484 Aem3 - - 10 39.72 cM anti-erythrocyte autoantibody modifier 3 unknown 102638987 XR_387456 Gm35415 - - 1 F|1 predicted gene, 35415 ncRNA 109279901 LOC109279901 Mm84 - - VISTA enhancer mm84 biological-region 54378 Mm.424047 NM_133183 ENSMUSG00000078815 Cacng6 2310033H20Rik - 7 A1|7 2.0 cM calcium channel, voltage-dependent, gamma subunit 6 protein-coding 102631744 Gm17174 - - 14|14 26.58 cM predicted gene 17174 protein-coding 14193 fh - - - fetal hematoma unknown 399673 Mm.377260 NM_001007222 ENSMUSG00000103362 Tdpoz2 - - 3|3 F2.1 TD and POZ domain containing 2 protein-coding 319743 Mm.119546 NM_176994 9630013D21Rik - - 4|4 C7 RIKEN cDNA 9630013D21 gene unknown 77802 A930026C06Rik - - 7|7 RIKEN cDNA A930026C06 gene protein-coding 69464 Mm.158279 NM_027087 ENSMUSG00000048294 Krtap4-13 2300006N05Rik - 11|11 D keratin associated protein 4-13 protein-coding 100526478 NR_037242 ENSMUSG00000093046 Mir3081 mir-3081|mmu-mir-3081 - 16 B4|16 28.88 cM microRNA 3081 ncRNA 77747 A230102O21Rik - - 13|13 RIKEN cDNA A230102O21 gene protein-coding 673676 XM_006518194 ENSMUSG00000090539 Gm9602 - - 14 A1|14 predicted gene 9602 protein-coding 100035297 Rbcq4 - - 10 57.74 cM red blood cell QTL 4 unknown 102636290 XR_378524 Gm33398 - - 7 F3|7 predicted gene, 33398 ncRNA 668973 Gm14395 - - X|X A1.1 kelch-like 21 pseudogene pseudo 226470 Mm.119711 NM_172643 ENSMUSG00000033964 Zbtb41 8430415N23Rik|9430031N01|9830132G07Rik|AI316857 - 1|1 E4 zinc finger and BTB domain containing 41 protein-coding 22308 Mm.377117 NM_009488 ENSMUSG00000096730 Vmn2r122 V2r12|V2r2|Vmn2r-ps158 - 4|4 vomeronasal 2, receptor, 122 protein-coding 61327 D3Mit184 - - 3 24.66 cM DNA segment, Chr 3, Massachusetts Institute of Technology 184 unknown 21743 Mm.299 NM_009349 ENSMUSG00000003477 Inmt Temt - 6|6 B3 indolethylamine N-methyltransferase protein-coding 100038453 Mm.214328 NR_040560 ENSMUSG00000074281 Gm12522 - - 3 F3|3 predicted gene 12522 ncRNA 105243509 XR_871052 Gm39411 - - 9 E3.3|9 predicted gene, 39411 ncRNA 102634653 XR_383104 Gm32187 - - 14 A2|14 predicted gene, 32187 ncRNA 20444 Mm.200388 NM_009179 ENSMUSG00000031749 St3gal2 AI429591|AW822065|ST3GalII|Siat5 - 8|8 E1 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 20979 Mm.289702 NM_009306 ENSMUSG00000035864 Syt1 AW124717|G630098F17Rik|SytI - 10 D1|10 56.52 cM synaptotagmin I protein-coding 52548 D13Ertd150e - - 13 17.82 cM DNA segment, Chr 13, ERATO Doi 150, expressed unknown 26887 Mm.89207 NM_011998 ENSMUSG00000035930 Chst4 GST-3|Gn6st-2|HEC-GlcNAc6ST - 8|8 D3 carbohydrate (chondroitin 6/keratan) sulfotransferase 4 protein-coding 100035953 Lmr17 - - 9 20.76 cM leishmaniasis resistance 17 unknown 226438 Mm.119675 NM_177642 ENSMUSG00000051985 Igfn1 9830123M21Rik - 1|1 E4 immunoglobulin-like and fibronectin type III domain containing 1 protein-coding 70596 5730447C08Rik - - 2|2 RIKEN cDNA 5730447C08 gene protein-coding 61991 D9Mit121 - - 9 71.85 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 121 unknown 94284 Mm.300095 NM_145079 ENSMUSG00000054545 Ugt1a6a UDPGT|UDPGT 1-6|UGT1-06|UGT1.6|Ugt1a6|Ugt1a7 - 1|1 D UDP glucuronosyltransferase 1 family, polypeptide A6A protein-coding 94176 Mm.380679 NM_033374 ENSMUSG00000020143 Dock2 AI662014|AW122239|CED-5|Hch|MBC - 11|11 A4 dedicator of cyto-kinesis 2 protein-coding 105243188 Gm39177 - - 8|8 predicted gene, 39177 ncRNA 723869 NR_029963 ENSMUSG00000065486 Mir450-1 Mirn450-1|mir-450a-1 - X A5|X microRNA 450-1 ncRNA 22350 Mm.277812 NM_009510 ENSMUSG00000052397 Ezr AW146364|R75297|Vil2|p81 - 17|17 A1 ezrin protein-coding 13107 Mm.4515 NM_007817 ENSMUSG00000052974 Cyp2f2 Cyp2f - 7|7 A3 cytochrome P450, family 2, subfamily f, polypeptide 2 protein-coding 105243970 XR_872328 Gm39671 - - 11 A3.3|11 predicted gene, 39671 ncRNA 83382 Mm.157702 NM_031181 ENSMUSG00000030474 Siglece Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E - 7 B3|7 sialic acid binding Ig-like lectin E protein-coding 67398 Mm.284688 NM_026130 ENSMUSG00000032042 Srpr 1300011P19Rik|D11Mgi27|Srpra - 9|9 A4 signal recognition particle receptor ('docking protein') protein-coding 30926 Mm.267692 NM_023140 ENSMUSG00000031068 Glrx3 PICOT|Txnl2 - 7|7 F4 glutaredoxin 3 protein-coding 225289 Mm.391081 NM_001033532 ENSMUSG00000033632 AW554918 4921538P22|AI461742|Kiaa1328|mKIAA1328 - 18|18 A2 expressed sequence AW554918 protein-coding 210356 Mm.377234 NM_172484 ENSMUSG00000049690 Nckap5 8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5 - 1|1 E3 NCK-associated protein 5 protein-coding 98115 C79042 - - - expressed sequence C79042 protein-coding 105827 Mm.24005 NM_178114 ENSMUSG00000048218 Amigo2 AI415330|AMIGO-2|AW208913|Ali1 - 15|15 F1 adhesion molecule with Ig like domain 2 protein-coding 102633181 XR_383743 ENSMUSG00000114979 Gm31072 - - 14 E4|14 predicted gene, 31072 ncRNA 100035250 Hdlq37 - - - HDL QTL 37 unknown 100040203 Scgb2a2 - - 19 A|19 secretoglobin, family 2A, member 2 protein-coding 435755 Mm.430561 NR_033594 ENSMUSG00000105712 Pou5f1-rs4 EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d - 3|3 G3 POU domain, class 5, transcription factor 1, related sequence 4 pseudo 61373 D4Mit214 - - 4 24.16 cM DNA segment, Chr 4, Massachusetts Institute of Technology 214 unknown 27914 D16Ium51 - - 16 51.53 cM DNA segment, Chr 16, Indiana University Medical 51 unknown 29857 Mm.38343 NM_013871 ENSMUSG00000022610 Mapk12 AW123708|Erk6|P38gamma|Prkm12|Sapk3 - 15|15 E3 mitogen-activated protein kinase 12 protein-coding 100038424 Mm.399128 Gm10604 - - 4 A1|4 predicted gene 10604 unknown 77853 Mm.326206 NM_001100451 ENSMUSG00000066415 Msl2 E130103E02Rik|Msl2l1|Rnf184 - 9|9 E4 MSL complex subunit 2 protein-coding 108453 Pmv68 Pmv-68 - - polytropic murine leukemia virus 68 other 11749 Mm.265347 NM_013472 ENSMUSG00000018340 Anxa6 AW107198|Anx6|AnxVI|Cabm|Camb - 11 B1.3|11 32.13 cM annexin A6 protein-coding 105244121 XR_866136 Gm39790 - - 2 B|2 predicted gene, 39790 ncRNA 108167964 XM_017315293 Gm46321 - - 12 F1|12 predicted gene, 46321 protein-coding 101735 AU015105 - - - expressed sequence AU015105 unknown 108167919 XR_001780291 Gm46291 - - 11 C|11 predicted gene, 46291 ncRNA 111860 Iapls3-48 - - - intracisternal A particle, lymphocyte specific 3-48 other 110165 Tel-rs1 - - - telomere, related sequence 1 protein-coding 231989 Mm.372520 NR_073371 ENSMUSG00000107935 Gm4872 D430007I03 - 6 B3|6 predicted gene 4872 ncRNA 52673 Mm.466870 NM_001033130 D13Ertd608e AU015195|AU016312 - - DNA segment, Chr 13, ERATO Doi 608, expressed unknown 110045 Ccw - - - cataract and curly whiskers unknown 435285 Mm.351895 NM_001013823 ENSMUSG00000046474 Krtap4-16 - - 11 D|11 keratin associated protein 4-16 protein-coding 108168389 XR_001782483 Gm46631 - - 18 E2|18 predicted gene, 46631 ncRNA 11514 Mm.1425 NM_009623 ENSMUSG00000022376 Adcy8 AC8|AW060868 - 15 D1|15 29.03 cM adenylate cyclase 8 protein-coding 545971 Gm5898 EG545971 - 7|7 C thyroid hormone receptor associated protein 3 pseudogene pseudo 100039739 Mm.488990 XR_880154 A430060F13Rik - - 11|11 D RIKEN cDNA A430060F13 gene unknown 74645 Mm.226900 NM_001142952 ENSMUSG00000044468 Fam46c 4930431B09Rik|AI449797 - 3|3 F2.2 family with sequence similarity 46, member C protein-coding 21990 Mm.248684 NM_009414 ENSMUSG00000040046 Tph1 Tph - 7 B3|7 30.43 cM tryptophan hydroxylase 1 protein-coding 105246488 XR_877547 Gm41773 - - 18 E2|18 predicted gene, 41773 ncRNA 26560 Mm.86430 NM_013713 ENSMUSG00000022931 Krtap15 Krtap15-1|Pmg-2|Pmg2 - 16|16 C3.3 keratin associated protein 15 protein-coding 13052 Mm.66222 NM_009988 ENSMUSG00000022865 Cxadr 2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR - 16|16 C3.1 coxsackie virus and adenovirus receptor protein-coding 231207 Mm.7233 NM_175937 ENSMUSG00000039782 Cpeb2 A630055H10Rik|Cpe-bp2 - 5|5 B3 cytoplasmic polyadenylation element binding protein 2 protein-coding 56420 Mm.41998 NM_019674 ENSMUSG00000030697 Ppp4c 1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4 - 7|7 F3 protein phosphatase 4, catalytic subunit protein-coding 111773 Iapls2-1 - - - intracisternal A particle, lymphocyte specific 2-1 other 112417 Mm.160362 NM_053215 ENSMUSG00000057425 Ugt2b37 0610033E06Rik - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide B37 protein-coding 70564 Mm.27227 NM_027464 ENSMUSG00000021792 Fam213a 5730469M10Rik|AU040822|Adrx|Pamm - 14|14 B family with sequence similarity 213, member A protein-coding 15568 Mm.119162 NM_010485 ENSMUSG00000040028 Elavl1 2410055N02Rik|HUR|Hua|W91709 - 8 A1.1|8 2.0 cM ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) protein-coding 27528 Mm.407415 NM_053078 ENSMUSG00000042834 Nrep AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17 - 18|18 B1 neuronal regeneration related protein protein-coding 14992 H2-M4-ps H-2M4|H2-M4 - 17 B1|17 19.16 cM histocompatibility 2, M region locus 4, pseudogene pseudo 399594 D430013B06Rik - - - RIKEN cDNA D430013B06 gene protein-coding 100035147 Scpro10 - - 18 28.28 cM Stem cell proliferation 10 unknown 61494 D7Mit195 - - 7 35.19 cM DNA segment, Chr 7, Massachusetts Institute of Technology 195 unknown 100417293 Gm18510 - - 10|10 D2 crumbs homolog 1 pseudogene pseudo 104390 Melc - - - melanocyte population size protein-coding 67349 Mm.174885 XR_141449 ENSMUSG00000085085 1700086P04Rik - - 4|4 D2.2 RIKEN cDNA 1700086P04 gene unknown 751549 NR_029816 ENSMUSG00000076062 Mir92-1 Mirn92-1|mir-92a-1 - 14 E4|14 microRNA 92-1 ncRNA 108167306 LOC108167306 - - 15 E1 Scube1 Hedgehog-responsive enhancer biological-region 70317 Mm.485046 NM_197995 ENSMUSG00000057594 Arl16 2600005N12Rik - 11|11 E2 ADP-ribosylation factor-like 16 protein-coding 102637706 XR_384439 Gm34447 - - 15 F1|15 predicted gene, 34447 ncRNA 54123 Mm.3233 NM_016850 ENSMUSG00000025498 Irf7 - - 7|7 F5 interferon regulatory factor 7 protein-coding 102465193 NR_105790 ENSMUSG00000099221 Mir6371 Gm27376|mmu-mir-6371 - 6|6 B2.3 microRNA 6371 ncRNA 667019 Gm8423 EG667019 - 8|8 A4 high mobility group box 3 pseudogene pseudo 17313 Mm.243085 NM_008597 ENSMUSG00000030218 Mgp Mglap - 6|6 G1 matrix Gla protein protein-coding 667607 Gm8723 EG667607 - 10|10 D1 THO complex 4 pseudogene pseudo 100417956 Gm14930 - - X|X E2 gem (nuclear organelle) associated protein 8 pseudogene pseudo 69150 Mm.28196 NM_080557 ENSMUSG00000022808 Snx4 1810036H14Rik|AI037066 - 16|16 B3 sorting nexin 4 protein-coding 102638802 XR_382809 ENSMUSG00000114203 Gm35279 - - 13 D1|13 predicted gene, 35279 ncRNA 108167988 LOC108167988 - - 12 A1.3 zinc finger protein 709-like pseudo 53323 Mm.319512 NM_016786 ENSMUSG00000029203 Ube2k AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig - 5 C3.1|5 33.72 cM ubiquitin-conjugating enzyme E2K protein-coding 70383 Mm.340211 NM_178379 ENSMUSG00000042148 Cox10 2410004F01Rik|AU042636 - 11|11 B3 cytochrome c oxidase assembly protein 10 protein-coding 111265 Snrp2a-rs3 - - - U2 small nuclear ribonucleoprotein 2A, related sequence 3 pseudo 62294 D19Mit71 - - 19 56.28 cM DNA segment, Chr 19, Massachusetts Institute of Technology 71 unknown 102632548 XR_386398 Gm30593 - - 18 E3|18 predicted gene, 30593 ncRNA 15202 Mm.17336 NM_010416 ENSMUSG00000068600 Gml2 1700057K19Rik|HemT|Hemt1 - 15|15 D3 glycosylphosphatidylinositol anchored molecule like 2 protein-coding 108169011 XR_001784558 Gm46892 - - 4 A5|4 predicted gene, 46892 pseudo 106264 Mm.347369 NM_025320 ENSMUSG00000107002 0610012G03Rik AI839730 - 16|16 B2 RIKEN cDNA 0610012G03 gene ncRNA 102639194 Gm12851 - - 4 C6|4 45.6 cM predicted gene 12851 pseudo 723853 NR_029959 ENSMUSG00000065489 Mir365-2 Mirn365-2|mir-365-2 - 11 B5|11 microRNA 365-2 ncRNA 102637059 Mm.383718 Gm11730 - - 11|11 81.84 cM predicted gene 11730 ncRNA 100038470 Mm.483782 Gm10808 - - - predicted gene 10808 unknown 69821 Mm.52809 NM_178051 ENSMUSG00000026273 Mterf4 1810059A23Rik|4933412H03Rik|Mterfd2 - 1|1 D mitochondrial transcription termination factor 4 protein-coding 27096 Mm.8392 NM_013718 ENSMUSG00000028847 Trappc3 1110058K12Rik|AI835942|AU019197|Bet3 - 4|4 D2.2 trafficking protein particle complex 3 protein-coding 100115376 Trdj1 Gm17016 - 14|14 C2 T cell receptor delta joining 1 other 17703 Mm.4816 NM_010836 ENSMUSG00000025469 Msx3 AI323377 - 7 F4|7 85.04 cM msh homeobox 3 protein-coding 105601 AU021745 - - - expressed sequence AU021745 unknown 387199 NR_029590 ENSMUSG00000065574 Mir203 Mirn203|mir-203|mmu-mir-203 - 12|12 F1 microRNA 203 ncRNA 105247285 Gm42409 - - Y|Y predicted gene, 42409 ncRNA 68846 Mm.24777 NM_176834 ENSMUSG00000044628 Rnf208 1110061N23Rik - 2|2 A3 ring finger protein 208 protein-coding 320556 Mm.445805 C230085N15Rik - - 17|17 RIKEN cDNA C230085N15 gene protein-coding 62029 D1Mit531 - - 1 28.97 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 531 unknown 102640719 XR_381035 Gm36720 - - 11 A1|11 predicted gene, 36720 ncRNA 625815 Gm13352 - - 2|2 A3 predicted gene 13352 pseudo 62242 D17Mit73 - - 17 50.3 cM DNA segment, Chr 17, Massachusetts Institute of Technology 73 unknown 338360 Mm.441590 NR_033214 ENSMUSG00000046415 B430212C06Rik - - 18|18 E1 RIKEN cDNA B430212C06 gene ncRNA 109279956 LOC109279956 Mm420 - - VISTA enhancer mm420 biological-region 52855 Mm.290880 NM_178611 ENSMUSG00000055541 Lair1 5133400O11Rik|BB115266|D7Bwg0421e|Lair-1 - 7 A1|7 2.31 cM leukocyte-associated Ig-like receptor 1 protein-coding 71776 Mm.3200 NM_027919 ENSMUSG00000017713 Tha1 1300017K07Rik|GLY1 - 11|11 E2 threonine aldolase 1 protein-coding 61271 D2Mit229 - - 2 88.99 cM DNA segment, Chr 2, Massachusetts Institute of Technology 229 unknown 100504518 Mm.318319 NM_001195097 ENSMUSG00000071540 3425401B19Rik Cefip - 14|14 B RIKEN cDNA 3425401B19 gene protein-coding 108592 Iap5rc8 - - - intracisternal A-type particle, U5 region, SINE repeat c-8 other 56220 Mm.254997 NM_019565 ENSMUSG00000042063 Zfp386 Kzf1|mKIAA4205 - 12|12 F2 zinc finger protein 386 (Kruppel-like) protein-coding 105246995 XR_880632 Gm42183 - - X A3.1|X predicted gene, 42183 ncRNA 100862342 XM_011251096 Gm21658 - - Y D|Y predicted gene, 21658 protein-coding 116526 Obq13 - - - obesity QTL 13 unknown 100043546 Gm15542 - - 7 F5|7 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene pseudo 105246538 XR_877743 Gm41812 - - 19 B|19 predicted gene, 41812 ncRNA 100381209 Gm17823 - - 10|10 B3 transaldolase 1 pseudogene pseudo 100042350 Gm14766 - - X|X C1 predicted gene 14766 pseudo 53291 475D1T7 - - - DNA segment, 471D1T7 (Roswell Park) unknown 100038566 Mm.361900 NR_045886 Gm10658 - - 9 B|9 predicted gene 10658 ncRNA 107806 Pick3 - - - protein that interacts with C kinase 3 protein-coding 668913 Rpl26-ps5 Gm14084 - 2|2 G1 ribosomal protein L26, pseudogene 5 pseudo 61380 D5Mit100 - - 5 82.06 cM DNA segment, Chr 5, Massachusetts Institute of Technology 100 unknown 207144 Bbaa19 Bb19 - 16 9.23 cM B.burgdorferi-associated arthritis 19 unknown 21418 Mm.85544 NM_011547 ENSMUSG00000021359 Tfap2a AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a - 13 A3.3|13 20.01 cM transcription factor AP-2, alpha protein-coding 53715 D4Nds10 D8Nds1 - - DNA segment, Chr 4, Nuffield Department of Surgery 10 unknown 81896 Mm.333335 NM_031177 ENSMUSG00000030323 Ift122 C86139|Wdr10|sopb - 6|6 E3 intraflagellar transport 122 protein-coding 102634435 XR_379714 Gm32018 - - 9 E3.3|9 predicted gene, 32018 ncRNA 52187 Mm.300814 NM_027491 ENSMUSG00000028278 Rragd 5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e - 4 A5|4 14.57 cM Ras-related GTP binding D protein-coding 100040119 Gm2611 - - 15|15 A2 predicted gene 2611 pseudo 387171 NR_029563 ENSMUSG00000065538 Mir153 Mirn153|mir-153|mmu-mir-153 - 12|12 F2 microRNA 153 ncRNA 102638507 Mm.364574 NR_155354 Gm26684 - - 15 D1|15 predicted gene, 26684 ncRNA 11771 Mm.6877 NM_007458 ENSMUSG00000060279 Ap2a1 Adtaa - 7|7 B3 adaptor-related protein complex 2, alpha 1 subunit protein-coding 109855 Aldr5 Ahr-1 - - aldehyde reductase 5 protein-coding 18549 Mm.294493 NM_008792 ENSMUSG00000027419 Pcsk2 6330411F23Rik|AI839700|Nec-2|Nec2|PC2|Phpp-2|SPC2 - 2 G1|2 70.89 cM proprotein convertase subtilisin/kexin type 2 protein-coding 75224 Mm.210899 4930528J11Rik AA517636 - 6|6 A3.3 RIKEN cDNA 4930528J11 gene protein-coding 100045066 Mm.404734 NR_151621 Gm17767 - - 1|1 C1.1 predicted gene, 17767 ncRNA 105243225 XR_878952 Gm39203 - - 8 C1|8 predicted gene, 39203 ncRNA 320163 Mm.444711 NR_045194 ENSMUSG00000097276 4930525G20Rik - - 13|13 B3 RIKEN cDNA 4930525G20 gene ncRNA 100126778 Mm.422023 NM_001177584 ENSMUSG00000090747 Esp8 Gm17495 - 17 B2|17 19.53 cM exocrine gland secreted peptide 8 protein-coding 384699 Gm5339 EG384699 - 7|7 E3 predicted gene 5339 pseudo 108167501 Mm.213234 XR_001778350 Gm5600 EG434228 - 7|7 F1 predicted gene 5600 ncRNA 100039142 Gm11931 - - 4|4 A5 predicted gene 11931 pseudo 100040940 Gm3053 - - 5|5 A1 predicted gene 3053 pseudo 493169 Thyct2 - - 3 66.69 cM thymocyte count 2 unknown 76916 Mm.132231 NM_024273 ENSMUSG00000002846 Timmdc1 2810021C21Rik|4930455C21Rik|AV135763 - 16|16 B4 translocase of inner mitochondrial membrane domain containing 1 protein-coding 14403 Mm.388925 NM_008072 ENSMUSG00000029054 Gabrd AI853201 - 4|4 E2 gamma-aminobutyric acid (GABA) A receptor, subunit delta protein-coding 105246262 XR_876753 Gm41570 - - 17 B1|17 predicted gene, 41570 ncRNA 665370 Gm7604 EG665370 - 14|14 A3 predicted gene 7604 pseudo 100526471 NR_037229 ENSMUSG00000106366 Mir3069 mir-3069|mmu-mir-3069 - 12 E|12 55.04 cM microRNA 3069 ncRNA 103950 Rn7s3 Rn7s-3 - - 7S RNA 3 scRNA 100503737 Gm11857 - - 4 A2|4 6.66 cM predicted gene 11857 pseudo 102637555 XR_377203 ENSMUSG00000105907 Gm34333 - - 5 G3|5 predicted gene, 34333 ncRNA 108167775 LOC108167775 - - 10 C1 60S ribosomal protein L23a pseudogene pseudo 108167471 Gm44978 - - 7 E1|7 predicted gene 44978 pseudo 108558 Iapls1-69 - - - intracisternal A particle, lymphocyte specific 1-69 other 78168 Mm.416927 4930477G07Rik - - 12|12 RIKEN cDNA 4930477G07 gene protein-coding 442855 D6Tem4 - - 6 61.03 cM DNA segment, Chr 6, Temple 4 unknown 100042874 Mm.4711 NM_001270510 ENSMUSG00000095852 Gm10256 - - Y A1|Y predicted gene 10256 protein-coding 105244990 Gm40507 - - 9|9 predicted gene, 40507 ncRNA 381203 Mm.329638 NM_198650 ENSMUSG00000037451 Slc22a20 Gm963|OAT1-L|mOAT6 - 19|19 A solute carrier family 22 (organic anion transporter), member 20 protein-coding 77783 A930008B05Rik - - - RIKEN cDNA A930008B05 gene protein-coding 18414 Mm.10760 NM_011019 ENSMUSG00000022146 Osmr OSMRB - 15 A1|15 3.3 cM oncostatin M receptor protein-coding 100418445 Gm19217 - - 10|10 C1 solute carrier family 5 (neutral amino acid transporters, system A), member 4b pseudogene pseudo 18590 Mm.2675 NM_008808 ENSMUSG00000025856 Pdgfa - - 5 G2|5 77.65 cM platelet derived growth factor, alpha protein-coding 381544 Mm.23504 NM_001033774 ENSMUSG00000060268 Armh1 1700012C08Rik|Gm1661|Gm1662|Ncrna00082 - 4|4 D1 armadillo-like helical domain containing 1 protein-coding 214189 Mm.255667 NM_145399 ENSMUSG00000021337 Scgn - - 13|13 A3.1 secretagogin, EF-hand calcium binding protein protein-coding 114527 Bomd1 Bmd5 - 7 48.43 cM bone mineral density 1 unknown 108167808 Gm28343 - - 1 A3|1 thioredoxin-like protein 4A pseudogene pseudo 171232 Mm.377189 NM_134198 ENSMUSG00000057203 Vmn1r234 V1rf1 - 17|17 A3.2 vomeronasal 1 receptor 234 protein-coding 109593 Mm.490545 NM_207222 ENSMUSG00000030226 Lmo3 AI854781|BB106490|Lmo-3|Rbtn-3|Rbtn3 - 6 G1|6 69.02 cM LIM domain only 3 protein-coding 15512 Mm.296181 NM_008301 ENSMUSG00000059970 Hspa2 70kDa|HSP70.2|HSP70A2|Hsp70-2 - 12 C3|12 33.73 cM heat shock protein 2 protein-coding 27760 D5Abb2e - - - DNA segment, Chr 5, Abbott 2 expressed unknown 72285 Mm.393409 XR_168565 1810073O08Rik - - 17|17 E4 RIKEN cDNA 1810073O08 gene ncRNA 382244 Mm.359506 NM_001122735 ENSMUSG00000095082 Gm15091 - - X F3|X predicted gene 15091 protein-coding 72905 2900035J10Rik - - 1|1 RIKEN cDNA 2900035J10 gene protein-coding 257850 Olfr416-ps1 EG257850|GA_x5J8B7W3B3M-318013-318414|Gm5032 - 1 H3|1 olfactory receptor 416, pseudogene 1 pseudo 16631 Mm.441781 NM_010647 ENSMUSG00000030178 Klra13-ps Klra13|Ly49M - 6 F3|6 63.44 cM killer cell lectin-like receptor subfamily A, member 13, pseudogene pseudo 19822 Mm.21281 NM_011278 ENSMUSG00000029110 Rnf4 AU018689|Gtrgeo8|SNURF - 5|5 B2 ring finger protein 4 protein-coding 100035006 Orq3 - - - ovulation rate QTL 3 unknown 102641949 LOC102641949 - - - ES1 protein homolog, mitochondrial protein-coding 320487 Mm.131941 NM_177171 ENSMUSG00000035181 Heatr5a C230081H03Rik|D930036F22Rik|mKIAA1316 - 12|12 B3-C1 HEAT repeat containing 5A protein-coding 102632414 XR_377165 Gm30492 - - 5 G2|5 predicted gene, 30492 ncRNA 100042499 Mm.469870 NM_001104645 ENSMUSG00000091045 Vmn2r55 - - 7|7 A1 vomeronasal 2, receptor 55 protein-coding 102632183 Gm21865 - - Y|Y predicted gene, 21865 protein-coding 104190 Po - - - postaxial polydactyly unknown 73548 1700094I16Rik - - X|X RIKEN cDNA 1700094I16 gene protein-coding 780891 Ighv1-39 Gm16964 - 12|12 F2 immunoglobulin heavy variable 1-39 other 102642612 XR_867447 Gm38618 - - 3 F1|3 predicted gene, 38618 ncRNA 111652 Ms6-3 - - - minisatellite-3 detected by probe 33.6 other 108168789 Gm46761 - - 2 F1|2 60S ribosomal protein L35a pseudogene pseudo 277667 Mm.303194 NM_001356572 ENSMUSG00000070617 Gm13089 - - 4 E1|4 predicted gene 13089 protein-coding 19446 Rb(1.2)5H Rb5H - - Robertsonian translocation, Chr 1 and 2, Harwell 5 other 108168571 XM_017318774 LOC108168571 - - Y E Y-linked testis-specific protein 1-like protein-coding 102634204 XR_385090 Gm31845 - - 16 C4|16 predicted gene, 31845 ncRNA 108167876 LOC108167876 - - 11 A1 39S ribosomal protein L30, mitochondrial pseudogene pseudo 100035967 Org5 ORG7.1 - 7 51.6 cM organ weight 5 unknown 66824 Mm.24163 NM_023258 ENSMUSG00000030793 Pycard 9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc - 7|7 F3 PYD and CARD domain containing protein-coding 105242929 XR_882056 Gm39001 - - 7 B3|7 predicted gene, 39001 ncRNA 102631619 Gm29914 - - 10|10 predicted gene, 29914 ncRNA 69099 Mm.423020 NM_026939 1810009N02Rik - - - RIKEN cDNA 1810009N02 gene protein-coding 100039389 Gm2203 - - 15|15 B3.3 Kruppel-like factor 5 pseudogene pseudo 723940 NR_030271 ENSMUSG00000076219 Mir487b Mirn487b|mir-487b - 12 F1|12 microRNA 487b ncRNA 108169132 XR_001785199 Gm46953 - - 6 A2|6 predicted gene, 46953 ncRNA 100417380 Gm18579 - - 14|14 C1 ubiquitin specific peptidase 7 pseudogene pseudo 402742 C130013N14Rik - - 1|1 RIKEN cDNA C130013N14 gene protein-coding 111552 Pmv39 Pmv-39 - - polytropic murine leukemia virus 39 other 102641986 Teyorf1 - - - testis expressed, Chromosome Y open reading frame 1 protein-coding 15953 Mm.24769 NM_008330 ENSMUSG00000078920 Ifi47 47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd - 11|11 B1.2 interferon gamma inducible protein 47 protein-coding 54645 Mm.194811 NM_207670 ENSMUSG00000031153 Gripap1 AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167 - X A1.1|X 3.51 cM GRIP1 associated protein 1 protein-coding 627394 Trav6d-3 Gm13955 - 14|14 C2 T cell receptor alpha variable 6D-3 other 665548 Gm7680 EG665548 - 9 A2|9 BTB (POZ) domain containing 10 pseudogene pseudo 229837 Gm4860 EG229837 - 3|3 G3 adaptor-related protein complex AP-1, sigma 3 pseudogene pseudo 111233 Hmgb1-rs6 Hmg-1RV-E|Hmg1-rs6 - - high mobility group box 1, related sequence 6 pseudo 72503 Mm.237103 NM_001002004 ENSMUSG00000010277 2610507B11Rik AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100 - 11 B5|11 46.74 cM RIKEN cDNA 2610507B11 gene protein-coding 628441 Rpl30-ps11 EG628441|Gm14522 - X|X A1.1 ribosomal protein L30, pseudogene 11 pseudo 110276 Lvis3 - - - lymphoid viral insertion site 3 protein-coding 105246870 XR_879895 Gm12257 - - 11 B1.3|11 36.36 cM predicted gene 12257 ncRNA 102638626 Mm.403077 XR_378547 ENSMUSG00000108849 Gm35147 - - 7 F3|7 predicted gene, 35147 ncRNA 665087 Gm7485 EG665087 - X|X E1 aldolase A, fructose-bisphosphate pseudogene pseudo 276742 Mm.377870 NM_001010835 ENSMUSG00000100689 Taar7e Gm697|taR-7e - 10|10 A4 trace amine-associated receptor 7E protein-coding 269604 Mm.219307 NM_177366 ENSMUSG00000047875 Gpr157 F730108M23Rik - 4|4 E2 G protein-coupled receptor 157 protein-coding 100035926 Hdlq34 - - - HDL QTL 34 unknown 72897 2900006B11Rik - - 11|11 RIKEN cDNA 2900006B11 gene protein-coding 16531 Mm.343607 NM_010610 ENSMUSG00000063142 Kcnma1 5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1 - 14|14 A3 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 protein-coding 100042443 Gm20920 - - Y|Y predicted gene, 20920 protein-coding 108167766 Gm46188 - - 10 A2|10 predicted gene, 46188 pseudo 52622 D15Ertd556e - - 6 37.78 cM DNA segment, Chr 15, ERATO Doi 556, expressed unknown 12289 Mm.9772 NM_028981 ENSMUSG00000015968 Cacna1d 8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC - 14 18.43 cM|14 B calcium channel, voltage-dependent, L type, alpha 1D subunit protein-coding 67619 Mm.36817 NM_026277 ENSMUSG00000003848 Nob1 1700021I09Rik|ART-4|Nob1p|Psmd8bp1 - 8|8 D3 NIN1/RPN12 binding protein 1 homolog protein-coding 61969 D8Mit304 - - 8 35.54 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 304 unknown 18299 oh - - - obstructive hydrocephalus unknown 105244182 XR_866363 Gm39835 - - 2 C1.3|2 predicted gene, 39835 ncRNA 100417466 Gm18628 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 105244130 XR_866163 Gm39798 - - 2 B|2 predicted gene, 39798 ncRNA 100035655 Idd27 - - 7 45.0 cM insulin dependent diabetes susceptibility 27 unknown 101264 D6Mgi33 AU040406 - - DNA Segment, Chr 6, Mouse Genome Informatics 33 unknown 102635874 Mm.244272 XR_389344 ENSMUSG00000106319 Gm33100 - - 5 E3|5 predicted gene, 33100 ncRNA 62146 D13Mit87 - - 13 18.41 cM DNA segment, Chr 13, Massachusetts Institute of Technology 87 unknown 171430 D19Char27 - - - DNA segment, Chr 19, Charest 27 unknown 404249 Mrgpra16 Gm486|MrgA16 - 7 B3|7 MAS-related GPR, member A16 protein-coding 229780 Mm.259648 NM_030016 ENSMUSG00000033439 Trmt13 4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76 - 3|3 G1 tRNA methyltransferase 13 protein-coding 20190 Mm.439745 NM_009109 ENSMUSG00000030592 Ryr1 AI528790|RYR-1|Ryr|skrr - 7 B1|7 16.94 cM ryanodine receptor 1, skeletal muscle protein-coding 666596 Gm12857 - - 4|4 D2.1 ribosomal protein S5 pseudogene pseudo 626649 Vmn1r-ps14 EG626649|Gm6692 - 6|6 B3 vomeronasal 1 receptor, pseudogene 14 pseudo 102635274 XR_380130 Gm32656 - - 10 A2|10 predicted gene, 32656 ncRNA 100978 Mm.187453 NM_133921 ENSMUSG00000072889 Nfxl1 1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9 - 5|5 C3.2 nuclear transcription factor, X-box binding-like 1 protein-coding 669149 Mm.377117 NM_011686 ENSMUSG00000000606 Vmn2r88 V2r13|V2r3 - 14|14 C1 vomeronasal 2, receptor 88 protein-coding 223701 Mm.439814 NM_153049 ENSMUSG00000042292 Mkl1 AMKL|Bsac|Mal|Mrtf-A - 15|15 E1 MKL (megakaryoblastic leukemia)/myocardin-like 1 protein-coding 102639165 XR_382548 Gm35540 - - 13 B2|13 predicted gene, 35540 ncRNA 639491 Gm13543 - - 2|2 B zinc finger protein 609 pseudogene pseudo 668431 Gm9167 EG668431 - 7 B1|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 66357 Mm.300697 NM_025509 ENSMUSG00000041084 Ostc 2310008M10Rik|5730557H03Rik - 3|3 G3 oligosaccharyltransferase complex subunit (non-catalytic) protein-coding 639774 Mm.248185 NM_001100466 ENSMUSG00000078599 Skint8 - - 4|4 D1 selection and upkeep of intraepithelial T cells 8 protein-coding 109373 Bw2 - - - body weight QTL 2 unknown 107094 Mm.276044 NM_199447 ENSMUSG00000035049 Rrp12 AA408556|AA536972|mKIAA0690 - 19|19 C3 ribosomal RNA processing 12 homolog (S. cerevisiae) protein-coding 103846 Mm.442654 AI845619 AW491098 - - expressed sequence AI845619 protein-coding 65114 Mm.296520 NM_022997 ENSMUSG00000031696 Vps35 AI647796|Mem3 - 8 C3|8 41.61 cM VPS35 retromer complex component protein-coding 100036052 Lith11 - - 8 61.66 cM lithogenic gene 11 unknown 71045 Mm.235682 NR_029437 ENSMUSG00000087475 4933406I18Rik 4933403D24Rik - 7|7 F1 RIKEN cDNA 4933406I18 gene ncRNA 104187 Lm1 Lm-1 - - lymphomyeloid antigen 1 protein-coding 61911 D2Mit456 - - 2 88.99 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 456 unknown 70883 Mm.418682 4921509A06Rik - - 9|9 RIKEN cDNA 4921509A06 gene protein-coding 18667 Mm.12798 NM_008829 ENSMUSG00000031870 Pgr 9930019P03Rik|BB114106|NR3C3|PR|PR-A|PR-B - 9|9 A1 progesterone receptor protein-coding 100504729 Gm13660 - - 2|2 44.72 cM predicted gene 13660 ncRNA 105245902 Gm41282 - - 15|15 predicted gene, 41282 ncRNA 109036 Mm.357559 6230415J03Rik - - 7|7 RIKEN cDNA 6230415J03 gene protein-coding 109305 Mm.218582 NM_175423 ENSMUSG00000049686 Orai1 D730049H07Rik|Tmem142a|orai-1 - 5|5 F ORAI calcium release-activated calcium modulator 1 protein-coding 22218 Mm.362118 NM_009460 ENSMUSG00000026021 Sumo1 GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1 - 1|1 C2 small ubiquitin-like modifier 1 protein-coding 78614 9530041E20Rik - - 7|7 RIKEN cDNA 9530041E20 gene protein-coding 56248 Mm.196067 NM_021299 ENSMUSG00000024782 Ak3 AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l - 19|19 C1 adenylate kinase 3 protein-coding 74310 Mm.440455 NR_131918 ENSMUSG00000085286 Ube4bos3 1700121F15Rik - 4|4 E2 ubiquitination factor E4B, opposite strand 3 ncRNA 17187 Mm.268548 NM_008558 ENSMUSG00000059436 Max AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8 - 12 C3|12 33.78 cM Max protein protein-coding 108168687 XR_001782947 LOC108168687 - - - uncharacterized LOC108168687 ncRNA 237831 Mm.340778 NM_001004148 ENSMUSG00000020805 Slc13a5 Indy|NaC2/NaCT|Nact|mINDY - 11|11 B4 solute carrier family 13 (sodium-dependent citrate transporter), member 5 protein-coding 102636086 XR_379387 Gm33256 - - 9 A5.3|9 predicted gene, 33256 ncRNA 75554 Mm.244348 1700020K04Rik - - 10|10 RIKEN cDNA 1700020K04 gene protein-coding 104199 H10 H-10 - - histocompatibility 10 protein-coding 108168305 XR_001781992 Gm46565 - - 16 B2|16 predicted gene, 46565 ncRNA 72215 Mm.269049 NM_028156 ENSMUSG00000018543 1700001P01Rik - - 11|11 D RIKEN cDNA 1700001P01 gene protein-coding 100126094 Mswtq1 - - - muscle weight QTL 1 unknown 105244794 Gm40342 - - 5|5 predicted gene, 40342 ncRNA 71058 Mm.67707 NR_045730 ENSMUSG00000110336 4933400L20Rik - - 8|8 D2 RIKEN cDNA 4933400L20 gene ncRNA 546101 Gm5915 EG546101 - 8|8 D3 predicted pseudogene 5915 protein-coding 192653 Mm.325487 NM_138951 ENSMUSG00000039438 Ttc36 - - 9|9 A5.2 tetratricopeptide repeat domain 36 protein-coding 492824 Ath11 - - - atherosclerosis 11 unknown 61923 D4Mit310 - - 4 78.87 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 310 unknown 56437 Mm.29467 NM_019662 ENSMUSG00000031880 Rrad REM3|Rad - 8|8 D3 Ras-related associated with diabetes protein-coding 100416544 Gm12192 - - 11|11 B1.2 ribosomal protein S10 pseudogene pseudo 100124549 Vmn2r-ps8 - - 3|3 E1 vomeronasal 2, receptor, pseudogene 8 pseudo 100124687 Trbv22 - - 6|6 B1 T cell receptor beta variable 22 pseudo 102640220 XR_391262 Gm36340 - - 7 B2|7 predicted gene, 36340 ncRNA 258920 Mm.377750 NM_146918 ENSMUSG00000081836 Olfr1180 MOR225-1 - 2|2 D olfactory receptor 1180 protein-coding 692152 Mm.453046 Igkv13-84 Igk-V33|gm33 - 6 C1|6 31.34 cM immunoglobulin kappa chain variable 13-84 other 12500 Mm.4527 NM_013487 ENSMUSG00000032094 Cd3d T3d - 9 A5.2|9 24.84 cM CD3 antigen, delta polypeptide protein-coding 623356 Gm6420 EG623356 - 1|1 A5 predicted gene 6420 protein-coding 104831 Mm.335477 NM_001081043 ENSMUSG00000036057 Ptpn23 AI462446|PTP-TD14 - 9|9 F2 protein tyrosine phosphatase, non-receptor type 23 protein-coding 105245148 Gm40641 - - 10|10 predicted gene, 40641 ncRNA 258743 Mm.223175 NM_146748 ENSMUSG00000073920 Olfr661 MOR40-4 - 7|7 E3 olfactory receptor 661 protein-coding 216151 Mm.39001 NM_172551 ENSMUSG00000020329 Polrmt 1110018N15Rik|4932416K13 - 10|10 C1 polymerase (RNA) mitochondrial (DNA directed) protein-coding 269204 A730034C02 - - 1|1 C3 uncharacterized protein A730034C02 protein-coding 27564 D5Buc38 503D21.SP6 - 5 38.37 cM DNA segment, Chr 5, Bucan 38 unknown 226971 Mm.292751 NM_145516 ENSMUSG00000026123 Plekhb2 2310009M15Rik|AU018239|Evt2|Phdc|evt-2 - 1|1 B pleckstrin homology domain containing, family B (evectins) member 2 protein-coding 666274 NM_001111278 Rps10-ps2 EG666274|Gm8017 - 16|16 B1 ribosomal protein S10, pseudogene 2 pseudo 102636061 Gm33237 - - 12|12 predicted gene, 33237 protein-coding 102637233 XR_389733 Gm34102 - - 1 H5|1 predicted gene, 34102 ncRNA 18752 Mm.7980 NM_011102 ENSMUSG00000078816 Prkcg PKCgamma|Pkcc|Prkcc - 7 A1|7 1.93 cM protein kinase C, gamma protein-coding 71996 Mm.20201 NM_028046 ENSMUSG00000035491 Fthl17a 1600014K23Rik|AI324104 - X|X C1 ferritin, heavy polypeptide-like 17, member A protein-coding 14472 Mm.204730 NM_010262 ENSMUSG00000034486 Gbx2 D130058E05Rik|Gbx-2|MMoxA|Stra7 - 1 D|1 45.06 cM gastrulation brain homeobox 2 protein-coding 100039043 Mm.460823 NM_001129886 Gm10731 - - 3|3 B FUN14 domain containing 2 pseudogene pseudo 97541 Mm.272427 NM_133794 ENSMUSG00000032604 Qars 1110018N24Rik|1200016L19Rik|C80286|GLNRS - 9|9 F2 glutaminyl-tRNA synthetase protein-coding 19878 Mm.276024 NM_009072 ENSMUSG00000020580 Rock2 B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619 - 12|12 A1.1 Rho-associated coiled-coil containing protein kinase 2 protein-coding 100416532 Gm18151 - - 18|18 D1 ribosomal protein S3A pseudogene pseudo 17865 Mm.4594 NM_008652 ENSMUSG00000017861 Mybl2 B-Myb|Bmyb - 2 H2|2 84.0 cM myeloblastosis oncogene-like 2 protein-coding 51856 D8Sut1e - - - DNA segment, Chr 8, Sutcliffe 1, expressed unknown 56812 Mm.489660 NM_020266 ENSMUSG00000026203 Dnajb2 2700059H22Rik|Dnajb10|Hsj1|mDj8 - 1|1 C4 DnaJ heat shock protein family (Hsp40) member B2 protein-coding 404254 Mrgprc2-ps MrgC2 - 7|7 B4 MAS-related GPR, member C2, pseudogene pseudo 100035190 Artmd1 Amd1 - 10 37.15 cM arthropathy in MRL and DBA/1 mice 1 unknown 78465 Mm.291078 NM_001033185 ENSMUSG00000070532 Ccdc190 1700084C01Rik - 1|1 H2.3-H3 coiled-coil domain containing 190 protein-coding 319561 A430088I17Rik - - 15|15 RIKEN cDNA A430088I17 gene protein-coding 105239 Mm.25366 NM_134064 ENSMUSG00000034928 Rnf44 AI854545|mKIAA1100 - 13|13 B1 ring finger protein 44 protein-coding 108168829 XR_001783613 Gm46784 - - 2 C1.1|2 predicted gene, 46784 ncRNA 100417749 Gm18804 - - 7|7 C NOP16 nucleolar protein homolog pseudogene pseudo 11537 Mm.4407 NM_013459 ENSMUSG00000061780 Cfd Adn|DF - 10 C1|10 39.72 cM complement factor D (adipsin) protein-coding 61833 D2Mit311 - - 2 86.02 cM DNA segment, Chr 2, Massachusetts Institute of Technology 311 unknown 100043512 Vmn2r-ps32 - - 6|6 F2 vomeronasal 2, receptor, pseudogene 32 pseudo 11972 Mm.17708 NM_013477 ENSMUSG00000013160 Atp6v0d1 AI267038|Ac39|Atp6d|P39|VATX|Vma6 - 8|8 D3 ATPase, H+ transporting, lysosomal V0 subunit D1 protein-coding 105246381 XR_877221 Gm41677 - - 18 A2|18 predicted gene, 41677 ncRNA 105246327 Gm41628 - - 17|17 predicted gene, 41628 ncRNA 102642067 XR_881827 Gm38596 - - 7 A1|7 predicted gene, 38596 ncRNA 100862436 LOC100862436 - - - H-2 class I histocompatibility antigen, D-37 alpha chain-like pseudo 14230 Mm.3894 NM_010221 ENSMUSG00000001555 Fkbp10 AI325255|FKBP-10|FKBP-65|FKBP65|Fkbp-rs1|Fkbp1-rs|Fkbp6|Fkbprp - 11 D|11 63.47 cM FK506 binding protein 10 protein-coding 100035665 Ua1 UA-1 - 2 86.02 cM urinary albuminuria 1 unknown 102638437 XM_006523132 Gm35004 - - 16 C3.3|16 predicted gene, 35004 protein-coding 20293 Mm.867 NM_011331 ENSMUSG00000035352 Ccl12 MCP-5|Scya12 - 11 C|11 49.9 cM chemokine (C-C motif) ligand 12 protein-coding 545605 Mm.425184 NR_152159 Gm5859 EG545605 - 4 A5|4 family with sequence similarity 205 pseudogene pseudo 67305 Mm.20164 NM_024198 ENSMUSG00000028597 Gpx7 3110050F08Rik|AI327032|GPX6 - 4|4 C7 glutathione peroxidase 7 protein-coding 61714 D5Mit309 - - 5 42.22 cM DNA segment, Chr 5, Massachusetts Institute of Technology 309 unknown 100504720 Mm.226595 NR_077063 2310002F09Rik - - 7|7 B3 RIKEN cDNA 2310002F09 gene ncRNA 100417340 Gm18543 - - 19|19 A crumbs homolog 1 pseudogene pseudo 74175 Mm.35806 NM_028798 ENSMUSG00000027913 Crct1 2300002G24Rik|AA589624|Nice-1 - 3|3 F1 cysteine-rich C-terminal 1 protein-coding 54604 Mm.86584 NM_018814 ENSMUSG00000021140 Pcnx 2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1 - 12|12 D1 pecanex homolog protein-coding 66882 Mm.21848 NM_025824 ENSMUSG00000051223 Bzw1 1200015E15Rik|mKIAA0005 - 1|1 C1.3 basic leucine zipper and W2 domains 1 protein-coding 107888 Pbr - - - resistance to Paracoccidioides brasiliensis unknown 100041255 Gm20866 - - Y|Y predicted gene, 20866 protein-coding 105244095 XR_866033 Gm39769 - - 2 A3|2 predicted gene, 39769 ncRNA 102465179 NR_105769 ENSMUSG00000098504 Mir6351 Gm27936|mmu-mir-6351 - 1|1 C3 microRNA 6351 ncRNA 435684 Mm.458215 NM_001013829 ENSMUSG00000033256 Shf - - 2|2 E5 Src homology 2 domain containing F protein-coding 13518 Mm.336625 NM_010081 ENSMUSG00000026131 Dst 2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339 - 1 B|1 12.91 cM dystonin protein-coding 61085 D5Mit344 - - 5 2.83 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 344 unknown 23957 Mm.346759 NM_011850 ENSMUSG00000037583 Nr0b2 SHP|SHP-1|Shp1 - 4 D2.3|4 66.25 cM nuclear receptor subfamily 0, group B, member 2 protein-coding 51838 D2Ggc5e - - - DNA segment, Chr 2, G. Consalez 5, expressed unknown 100040612 Spin2-ps6 Gm2864 - X A3.1|X spindlin family, member 2, pseudogene 6 pseudo 102636860 XR_001780689 Gm33813 - - 12 F1|12 predicted gene, 33813 ncRNA 108259 Eif4e-ps - - - eukaryotic translation initiation factor 4E, pseudogene pseudo 72140 Mm.133263 NM_028120 ENSMUSG00000023072 Cep89 2610507L03Rik|Ccdc123 - 7|7 B2 centrosomal protein 89 protein-coding 67889 Mm.205937 NM_026434 ENSMUSG00000026889 Rbm18 2010004P11Rik|AU015530 - 2|2 B RNA binding motif protein 18 protein-coding 632793 Mm.432450 NM_001045544 ENSMUSG00000094637 Vmn1r204 Gm11301 - 13 A3.1|13 vomeronasal 1 receptor 204 protein-coding 224674 Mm.311395 NM_153062 ENSMUSG00000024036 Slc37a1 G3PP - 17|17 A3.3 solute carrier family 37 (glycerol-3-phosphate transporter), member 1 protein-coding 20760 Mm.10692 NM_011472 ENSMUSG00000050635 Sprr2f - - 3 F1|3 40.14 cM small proline-rich protein 2F protein-coding 28269 D10Jhu36 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 36 unknown 100415977 Gm17848 - - 10|10 D1 nucleolin pseudogene pseudo 102632832 Gm28440 - - Y|Y predicted gene 28440 ncRNA 102635590 XR_869303 Gm32882 - - 6 D3|6 predicted gene, 32882 ncRNA 667034 Mm.482171 NM_001123371 ENSMUSG00000068417 Pnp2 - - 14|14 C1 purine-nucleoside phosphorylase 2 protein-coding 12659 Mm.431947 NM_007696 ENSMUSG00000074340 Ovgp1 120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9 - 3|3 F2.2 oviductal glycoprotein 1 protein-coding 328186 Mm.188154 NM_183202 Gm10336 B330003H21 - 13 A1|13 predicted gene 10336 ncRNA 668421 Mm.491093 Ighv14-2 Gm16683 - 12|12 F1 immunoglobulin heavy variable 14-2 other 432593 Mm.342467 NR_108029 Gm11538 - - 11|11 D predicted gene 11538 ncRNA 100042619 Gm20932 - - Y|Y predicted gene, 20932 protein-coding 380793 Ighg2a 1810060O09Rik|Igh-1|Igh-1a - 12 F2|12 immunoglobulin heavy constant gamma 2A other 66878 Mm.28551 NM_024182 ENSMUSG00000024404 Riok3 1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd - 18 A1|18 6.15 cM RIO kinase 3 protein-coding 102639801 XR_389518 Gm36027 - - 5 F|5 predicted gene, 36027 ncRNA 102641086 XM_006536721 LOC102641086 - - - DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein-coding 22776 Mm.89976 NM_011769 ENSMUSG00000002266 Zim1 - - 7 A1|7 3.87 cM zinc finger, imprinted 1 protein-coding 67121 Mm.253721 NM_025979 ENSMUSG00000026779 Mastl 2700091H24Rik|C88295|GW|GWL|MAST-L|THC2 - 2|2 A3 microtubule associated serine/threonine kinase-like protein-coding 99151 Mm.296336 NM_207298 ENSMUSG00000039787 Cercam 2600006K01Rik|AL024097|Ceecam1 - 2 B|2 20.76 cM cerebral endothelial cell adhesion molecule protein-coding 258933 Mm.377755 NM_146931 ENSMUSG00000052012 Olfr796 MOR269-1 - 10|10 D3 olfactory receptor 796 protein-coding 105245624 XR_873936 Gm41053 - - 13 D2.1|13 predicted gene, 41053 ncRNA 414326 D930050J11 - - 11|11 uncharacterized D930050J11 unknown 52724 D14Ertd275e - - - DNA segment, Chr 14, ERATO Doi 275, expressed unknown 100124591 Vmn2r-ps156 - - Y|Y E vomeronasal 2, receptor, pseudogene 156 pseudo 72133 Mm.258404 NM_028115 ENSMUSG00000025086 Trub1 2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870 - 19|19 D2 TruB pseudouridine (psi) synthase family member 1 protein-coding 105245972 Gm41342 - - 15|15 predicted gene, 41342 ncRNA 108168384 LOC108168384 - - 18 B3 60S ribosomal protein L17 pseudogene pseudo 244710 Gm4977 EG244710 - 9|9 A2 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 104250 Ly99 - - - lymphocyte antigen 99 protein-coding 69511 Mm.20163 NM_027097 ENSMUSG00000044430 Klk12 2310008B01Rik|AI324852|KLK-L5 - 7 B3|7 28.26 cM kallikrein related-peptidase 12 protein-coding 669866 Gm9472 - - 12|12 A3 predicted gene 9472 pseudo 85115 D18Mit32 - - 18 7.8 cM DNA segment, Chr 18, Massachusetts Institute of Technology 32 unknown 105247268 Gm42396 - - 7|7 predicted gene, 42396 ncRNA 102465547 NR_105872 ENSMUSG00000098376 Mir6907 Gm27351|mmu-mir-6907 - 10|10 C1 microRNA 6907 ncRNA 102637831 XR_877163 Gm34541 - - 18 A1|18 predicted gene, 34541 ncRNA 102642644 Gm38622 - - 9|9 predicted gene, 38622 ncRNA 68796 Mm.205169 NM_144525 ENSMUSG00000038828 Tmem214 1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280 - 5|5 B1 transmembrane protein 214 protein-coding 69324 Mm.31700 NM_027038 ENSMUSG00000020617 1700012B07Rik 1700069D21Rik - 11|11 E1 RIKEN cDNA 1700012B07 gene protein-coding 380959 Mm.17853 NM_001033441 ENSMUSG00000075470 Alg10b AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5 - 15|15 E3 asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase) protein-coding 102639713 LOC102639713 - - 2 H4 zinc finger protein 239-like pseudo 66435 Mm.213406 NM_025561 ENSMUSG00000042104 Uggt2 1810064L21Rik|3110001A05Rik|3110027P15Rik|A230065J02Rik|AW047562|Ugcgl2 - 14|14 E4 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 625281 XM_891806 Gm6570 EG625281 - 3|3 F1 predicted gene 6570 protein-coding 226999 Mm.256414 NM_001033289 ENSMUSG00000026062 Slc9a2 2210416H12Rik|4932415O19Rik|AV333884|NHE2 - 1 B|1 19.66 cM solute carrier family 9 (sodium/hydrogen exchanger), member 2 protein-coding 110059 Lmr1 - - 17 20.67 cM leishmaniasis resistance 1 unknown 327780 Mm.425630 4933439G19Rik D430050E20Rik - 10|10 C1 RIKEN cDNA 4933439G19 gene unknown 105243012 Gm39060 - - 7|7 predicted gene, 39060 ncRNA 26428 Mm.291059 NM_011958 ENSMUSG00000026761 Orc4 Orc4P|Orc4l|mMmORC4 - 2|2 C1.1 origin recognition complex, subunit 4 protein-coding 102635565 Gm32864 - - 1|1 predicted gene, 32864 ncRNA 67984 Mm.107918 4930415O11Rik - - 18|18 RIKEN cDNA 4930415O11 gene protein-coding 53303 386N23T7 - - - DNA segment, 386N23T7 (Roswell Park) unknown 359989 DXMgc127 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 127 unknown 664810 Gm7350 - - X A2|X predicted gene 7350 pseudo 101055923 LOC101055923 - - 2 A1 actin, cytoplasmic 3-like pseudo 102787 Mm.382207 AW552889 - - - expressed sequence AW552889 unknown 52099 D1Ertd75e - - 1 90.73 cM DNA segment, Chr 1, ERATO Doi 75, expressed unknown 102637623 XR_382141 Gm34385 - - 13 A3.1|13 predicted gene, 34385 ncRNA 224010 Rpl29-ps4 EG224010|Gm4826 - 16|16 A2 ribosomal protein L29, pseudogene 4 pseudo 59013 Mm.21740 NM_021510 ENSMUSG00000007850 Hnrnph1 AI642080|E430005G16Rik|Hnrnph|Hnrph1 - 11|11 B1.3 heterogeneous nuclear ribonucleoprotein H1 protein-coding 241447 Mm.222222 NM_172856 ENSMUSG00000027035 Cers6 4732462C07Rik|AW544719|Lass6|T1L - 2|2 C2 ceramide synthase 6 protein-coding 626482 Wsb2-ps Gm12282 - 11|11 B2 WD repeat and SOCS box-containing 2, pseudogene pseudo 258399 Mm.377482 NM_146404 ENSMUSG00000061195 Olfr1289 MOR245-6 - 2|2 E3 olfactory receptor 1289 protein-coding 546954 Gm6003 EG546954 - 7|7 B1 predicted gene 6003 protein-coding 100534287 Mm.44343 NM_001357165 Dchs2 EG627094|Gm417|Gm6731 - 3|3 E3 dachsous cadherin related 2 protein-coding 102636913 Gm33855 - - 9|9 predicted gene, 33855 ncRNA 105247167 XR_001784263 Gm42315 - - 4 A5|4 predicted gene, 42315 ncRNA 268676 Gm5042 EG268676 - 13|13 C1 predicted gene 5042 pseudo 109286559 LOC109286559 - - - limb enhancer upstream of Tbx2 biological-region 230590 Mm.301798 NM_001167936 ENSMUSG00000034645 Zyg11a BC022150 - 4|4 C7 zyg-11 family member A, cell cycle regulator protein-coding 56695 Mm.384726 NM_019999 ENSMUSG00000026179 Pnkd 2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2 - 1|1 C3 paroxysmal nonkinesiogenic dyskinesia protein-coding 100093682 Trnaw-cca - - - transfer RNA tryptophan (anticodon CCA) tRNA 114617 Bdln2 - - 15 13.74 cM body length 2 unknown 53143 Y91m8f11 - - - DNA segment, Y91m8f11 unknown 547033 Gm6015 EG547033 - 9|9 A1 phosphoglucomutase 2 pseudogene pseudo 105247203 XR_881560 Gm42342 - - 4 E1|4 predicted gene, 42342 ncRNA 723843 NR_029765 ENSMUSG00000065526 Mir337 Mirn337|mir-337|mmu-mir-337 - 12|12 F1 microRNA 337 ncRNA 630453 Gm7034 EG630453 - 10 B5.3|10 high mobility group box 1-like pseudogene pseudo 109279989 LOC109279989 Mm725 - - VISTA enhancer mm725 biological-region 102634842 XR_378705 Gm32330 - - 8 A1.1|8 predicted gene, 32330 ncRNA 102639018 XR_380747 Gm35437 - - 10 D1|10 predicted gene, 35437 ncRNA 258439 Mm.377502 NM_146447 ENSMUSG00000109528 Olfr1309 MOR245-5 - 2|2 E3 olfactory receptor 1309 protein-coding 19456 Rb(10.11)5Rma Rb5Rma - - Robertsonian translocation, Chr 10 and 11, Universita di Roma 5 other 23943 Mm.66056 NM_011843 ENSMUSG00000025366 Esyt1 Fam62a|Mbc2|vp115 - 10|10 D3 extended synaptotagmin-like protein 1 protein-coding 13450 dp - - - dilution-Peru unknown 102466646 NR_105836 ENSMUSG00000098817 Mir6409 Gm27787|mmu-mir-6409 - 10|10 C1 microRNA 6409 ncRNA 67836 Mm.334680 NM_026399 ENSMUSG00000005150 Wdr83 1500041N16Rik|Morg1 - 8|8 C3 WD repeat domain containing 83 protein-coding 100503443 Gm19694 - - 3|3 4.79 cM protein tyrosine phosphatase type IVA 1-like pseudo 102636305 XR_390686 Gm33410 - - 4 C4|4 predicted gene, 33410 ncRNA 19062 Mm.1458 NM_008916 ENSMUSG00000006127 Inpp5k C62|Pps|SKIP - 11 B5|11 45.92 cM inositol polyphosphate 5-phosphatase K protein-coding 105247146 XR_881367 Gm42298 - - 4 C2|4 predicted gene, 42298 ncRNA 102637337 XR_389299 Gm34175 - - 5 C3.3|5 predicted gene, 34175 ncRNA 66704 Mm.396734 NM_025717 ENSMUSG00000033760 Rbm4b 4921506I22Rik|AI504630|AI506404|Lark2|Neosin - 19|19 A RNA binding motif protein 4B protein-coding 76137 Mm.426290 NM_001081059 ENSMUSG00000021371 Mcur1 6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a - 13|13 A4 mitochondrial calcium uniporter regulator 1 protein-coding 100417453 Gm18616 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 102639771 XR_374613 Gm36002 - - 2 C2|2 predicted gene, 36002 ncRNA 547166 Gm6023 EG547166 - X|X A3.3 predicted gene 6023 pseudo 258089 Mm.377347 NM_001011828 ENSMUSG00000062426 Olfr304 MOR219-3P - 7|7 D3 olfactory receptor 304 protein-coding 21819 Mm.441333 NM_009375 ENSMUSG00000053469 Tg Tgn|cog - 15 D2|15 29.3 cM thyroglobulin protein-coding 621324 Gm6212 EG621324|HSA-C - 14|14 E4 CD24a antigen pseudogene pseudo 105246949 XR_880507 Gm42142 - - 5 E5|5 predicted gene, 42142 ncRNA 384356 Gm5301 EG384356 - 6|6 A3.1 Crn, crooked neck-like 1 pseudogene pseudo 109279949 LOC109279949 Mm404 - - VISTA enhancer mm404 biological-region 258233 Mm.377278 NM_207133 ENSMUSG00000095765 Olfr741 GA_x5J8B7TYL6J-3-280|GA_x5J8B7U07Q4-325-757|GA_x6K02T2PMLR-6197851-6198786|MOR106-10|MOR106-15 - 14|14 C1 olfactory receptor 741 protein-coding 233863 Mm.294173 NM_207239 ENSMUSG00000032777 Gtf3c1 - - 7 F3|7 69.01 cM general transcription factor III C 1 protein-coding 93847 D1Jor2 - - - DNA segment, Chr 1, Barbara Jordan 2 unknown 105246333 Gm41634 - - 17|17 predicted gene, 41634 ncRNA 67242 Mm.279985 NM_026053 ENSMUSG00000055760 Gemin6 2610019B15Rik|2810470M17Rik - 17|17 E3 gem nuclear organelle associated protein 6 protein-coding 53892 Mm.45609 NM_016910 ENSMUSG00000020525 Ppm1d AV338790|Wip1 - 11 C|11 51.34 cM protein phosphatase 1D magnesium-dependent, delta isoform protein-coding 13004 Mm.268079 NM_007789 ENSMUSG00000002341 Ncan C230035B04|Cspg3|Cspg3-rs|Tgfbit - 8 B3.3|8 34.15 cM neurocan protein-coding 105246642 XR_878244 Gm41901 - - X F1|X predicted gene, 41901 ncRNA 320119 Mm.220912 NM_178775 ENSMUSG00000089872 Rps6kc1 AA682037|B130003F20Rik|C80612|Rpk118 - 1|1 H6 ribosomal protein S6 kinase polypeptide 1 protein-coding 100534276 Gm21998 - - X|X D tubulin, alpha 4A pseudogene pseudo 17225 Mm.4409 NM_008571 ENSMUSG00000022226 Mcpt2 MMCP-2|Mcp-2 - 14 C3|14 28.19 cM mast cell protease 2 protein-coding 61000 D3Mit132 - - 3 7.68 cM DNA segment, Chr 3, Massachusetts Institute of Technology 132 unknown 61340 D3Mit213 - - 3 42.66 cM DNA segment, Chr 3, Massachusetts Institute of Technology 213 unknown 67085 Mm.109099 NM_001034037 ENSMUSG00000072473 1700024G13Rik C10orf53 - 14|14 B RIKEN cDNA 1700024G13 gene protein-coding 72978 Mm.338083 NM_028408 ENSMUSG00000026514 Cnih3 2900075G08Rik|CNIH-3 - 1|1 H4 cornichon family AMPA receptor auxiliary protein 3 protein-coding 102640817 XR_378916 Gm36795 - - 8 A4|8 predicted gene, 36795 ncRNA 108167410 Gm45973 - - 7 A2|7 predicted gene, 45973 pseudo 258973 Mm.463734 NM_146971 ENSMUSG00000099486 Olfr1228 MOR233-1 - 2|2 E1 olfactory receptor 1228 protein-coding 71878 Mm.85162 NM_027975 ENSMUSG00000027654 Fam83d 2310007D09Rik|BB104611 - 2|2 H1 family with sequence similarity 83, member D protein-coding 76551 Mm.281741 NM_001111121 ENSMUSG00000048701 Ccdc6 2810012H18Rik|AA536681|AA960498|AW061011 - 10|10 B5.3 coiled-coil domain containing 6 protein-coding 269423 Mm.32373 NM_026622 ENSMUSG00000037818 Abhd18 2310068E01Rik|3110057O12Rik|AI645591 - 3 B|3 abhydrolase domain containing 18 protein-coding 233537 Mm.375772 NM_177696 ENSMUSG00000035582 Gdpd4 4921513O04 - 7|7 E1 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 76998 Mm.442009 NM_001303003 ENSMUSG00000104614 Fbxw27 1700124P09Rik - 9|9 F2 F-box and WD-40 domain protein 27 protein-coding 62392 D16Mit51 - - 16 53.78 cM DNA segment, Chr 16, Massachusetts Institute of Technology 51 unknown 100316713 NR_035494 ENSMUSG00000088054 Mir1968 mir-1968|mmu-mir-1968 - 8 A1.1|8 5.73 cM microRNA 1968 ncRNA 108364 Mtv46 Mtv-42|Mtv-46 - - mammary tumor virus locus 46 other 777686 Ighv2-2 Gm16970|Ighvq52.3.8 - 12|12 F1 immunoglobulin heavy variable 2-2 other 100036330 Abfw6 - - - abdominal fat weight 6 unknown 102637634 XM_006523125 Gm34396 - - 16 C3.3|16 predicted gene, 34396 protein-coding 14645 Mm.210745 NM_008131 ENSMUSG00000026473 Glul GS|Glns - 1|1 G3 glutamate-ammonia ligase (glutamine synthetase) protein-coding 667189 Gm8502 EG667189 - Y|Y A1 predicted gene 8502 pseudo 62053 D4Mit361 - - 4 10.61 cM DNA segment, Chr 4, Massachusetts Institute of Technology 361 unknown 237954 XM_011249376 ENSMUSG00000078632 Lrrc37a Gm251 - 11|11 E1 leucine rich repeat containing 37A protein-coding 66445 Mm.29196 NM_025567 ENSMUSG00000022551 Cyc1 2610002H19Rik|AA408921|Cyct1 - 15|15 D3 cytochrome c-1 protein-coding 435947 Mm.480281 NM_001166712 ENSMUSG00000093853 Vmn1r151 EG435947|Gm5727 - 7|7 A3 vomeronasal 1 receptor 151 protein-coding 207304 Mm.249391 NM_144788 ENSMUSG00000035247 Hectd1 A630086P08Rik|AI844876|b2b327Clo|opm - 12 B3|12 22.11 cM HECT domain E3 ubiquitin protein ligase 1 protein-coding 225207 Mm.40325 NM_145492 ENSMUSG00000024420 Zfp521 B930086A16Rik|Evi3|Znf521 - 18 A1|18 7.68 cM zinc finger protein 521 protein-coding 98170 Mm.490254 NM_133804 ENSMUSG00000024736 Tmem132a 6720481D13Rik|Hspa5bp1|Orai1|R74613 - 19|19 A transmembrane protein 132A protein-coding 108267 Uba1y-rs1 Ube1y1-rs1 - - ubiquitin-activating enzyme, Chr Y related sequence 1 pseudo 15430 Mm.24420 NM_013554 ENSMUSG00000050368 Hoxd10 AI385591|AI874987|Hox-4.5|Hox-5.3 - 2 C3|2 44.13 cM homeobox D10 protein-coding 625650 Mm.380194 NM_001243016 ENSMUSG00000096867 Gm10057 - - X F3|X predicted gene 10057 protein-coding 105244850 XR_872673 Gm40384 - - 12 A3|12 predicted gene, 40384 ncRNA 67728 Mm.13823 NM_026344 ENSMUSG00000028540 Dph2 9130020C19Rik|AI467389|Dph2l2 - 4|4 D2.1 DPH2 homolog protein-coding 69139 Mm.491056 NR_040641 ENSMUSG00000086818 Ctrcos 1810035I16Rik - 4|4 E1 chymotrypsin C (caldecrin), opposite strand ncRNA 97095 C81521 - - - expressed sequence C81521 unknown 72475 Mm.195635 NM_023672 ENSMUSG00000061887 Ssbp3 2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1 - 4|4 C7 single-stranded DNA binding protein 3 protein-coding 53776 D17Aus3I D17Au3I - - DNA segment, Chr 17, Austin-3I unknown 319518 Mm.28350 NM_198308 ENSMUSG00000033624 Pdpr 4930402E16Rik|AU018056|mKIAA1990 - 8|8 E1 pyruvate dehydrogenase phosphatase regulatory subunit protein-coding 105894 Mm.384038 AI790276 - - - expressed sequence AI790276 unknown 100039051 Gm11496 - - 11|11 C predicted gene 11496 protein-coding 628518 Mm.465110 NM_001099306 ENSMUSG00000079532 Gm6890 EG628518 - X|X A7.3 predicted gene 6890 protein-coding 105245779 XR_874704 Gm17232 - - 14 D1|14 33.31 cM predicted gene 17232 ncRNA 110120385 LOC110120385 - - - VISTA enhancer mm186 biological-region 102467445 n-TGgcc4 n-Tg12 - 1 H3|1 nuclear encoded tRNA glycine 4 (anticodon GCC) tRNA 62049 DXMit231 - - - DNA Segment, Chr X, Massachusetts Institute of Technology 231 unknown 665767 Vmn2r-ps96 Gm7777 - 13 B3|13 vomeronasal 2, receptor, pseudogene 96 pseudo 69535 Mm.390347 NM_027107 ENSMUSG00000020778 Ten1 2310004N24Rik - 11|11 E2 TEN1 telomerase capping complex subunit protein-coding 105242389 XR_865571 Gm38673 - - 1 C5|1 predicted gene, 38673 ncRNA 108168457 XR_001782768 Gm46680 - - X A7.3|X predicted gene, 46680 ncRNA 238317 Mm.31256 NM_001163501 ENSMUSG00000042507 Elmsan1 9430029N19Rik|C130039O16Rik|Gm260 - 12|12 D1 ELM2 and Myb/SANT-like domain containing 1 protein-coding 114288 Manh21 QTL-SH15.1 - - mandible shape 21 unknown 319876 Mm.34159 NM_027225 ENSMUSG00000034903 Cobll1 1810047P18Rik|Coblr1|D430044D16Rik - 2|2 C1.3 Cobl-like 1 protein-coding 102640661 XR_378573 Gm36675 - - 7 F3|7 predicted gene, 36675 ncRNA 102634425 XR_378142 Gm32010 - - 6 G3|6 predicted gene, 32010 ncRNA 102637151 XR_001782144 Gm34035 - - 17 A1|17 predicted gene, 34035 ncRNA 105246559 Gm41833 - - 19|19 predicted gene, 41833 ncRNA 100034969 Tilss1 - - 6 51.53 cM TNF-induced lethal shock susceptibility 1 unknown 13844 Mm.250981 NM_010142 ENSMUSG00000028664 Ephb2 Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5 - 4 D3|4 69.0 cM Eph receptor B2 protein-coding 100503612 Gm19798 - - 5|5 17.83 cM nuclear cap-binding protein subunit 2-like pseudo 105242627 Mm.421247 Gm14546 - - 6|6 14.85 cM predicted gene 14546 ncRNA 258347 Mm.463729 NM_146350 ENSMUSG00000043274 Olfr1123 MOR264-17 - 2|2 D olfactory receptor 1123 protein-coding 212090 Mm.347525 NM_177601 ENSMUSG00000045435 Tmem60 BC027828 - 5|5 A3 transmembrane protein 60 protein-coding 665419 Rab11b-ps2 EG665419|Gm7630 - 19 A|19 RAB11B, member RAS oncogene family, pseudogene 2 pseudo 110120463 LOC110120463 - - - VISTA enhancer mm1054 biological-region 105243582 XR_880298 Gm39467 - - 11 E2|11 predicted gene, 39467 ncRNA 100035385 Modor2 - - - modifier of ocular retardation 2 unknown 102635837 XR_388677 Gm33078 - - 11 B1.3|11 predicted gene, 33078 ncRNA 51939 Mm.394829 D3Ertd731e - - - DNA segment, Chr 3, ERATO Doi 731, expressed unknown 100415995 Gm15257 - - X|X A1.1 predicted gene 15257 pseudo 100043393 Gm4410 - - 3|3 G3 ornithine aminotransferase pseudogene pseudo 105244014 Gm39706 - - 1|1 predicted gene, 39706 ncRNA 27708 D1Dau28 - - - DNA segment, Chr 1, DA Underhill 28 unknown 108168504 Gm46700 - - Y A1|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 493019 Tsvw1 - - - testis and seminal vesicles weight 1 unknown 58182 Mm.333226 NM_021381 ENSMUSG00000049409 Prokr1 EG-VEGFR1|Gpr73|Pk-r1|Pkr1 - 6|6 D1 prokineticin receptor 1 protein-coding 232232 Mm.206218 NM_144919 ENSMUSG00000034245 Hdac11 - - 6|6 D1 histone deacetylase 11 protein-coding 432605 LOC432605 - - 11|11 D uncharacterized LOC432605 unknown 63828 Mm.266448 NM_022014 ENSMUSG00000025175 Fn3k 2310074G21Rik - 11|11 E2 fructosamine 3 kinase protein-coding 668246 Gm9064 EG668246 - 7|7 E3 heterogeneous nuclear ribonucleoprotein A1 pseudogene pseudo 100046692 Gm20564 - - 15|15 F1 40S ribosomal protein S10-like pseudo 102637779 XR_378736 Gm34505 - - 8 A1.1|8 predicted gene, 34505 ncRNA 105245801 XR_874761 Gm41192 - - 14 D2|14 predicted gene, 41192 ncRNA 101738 Mm.25921 AU015558 - - - expressed sequence AU015558 protein-coding 668622 Gm9273 EG668622 - 3|3 F2.2 phosducin-like 3 pseudogene pseudo 100170400 Mxra8os Gm10562 - - matrix-remodelling associated 8, opposite strand unknown 102636045 Gm16185 - - 9|9 50.85 cM predicted gene 16185 ncRNA 105245041 XR_872916 Gm40552 - - 12 E|12 predicted gene, 40552 ncRNA 27906 D16Ium59 - - 16 39.07 cM DNA segment, Chr 16, Indiana University Medical 59 unknown 114716 Mm.266627 NM_033523 ENSMUSG00000045671 Spred2 C79158 - 11|11 A3.1 sprouty-related, EVH1 domain containing 2 protein-coding 104023 Qd - - - queue deformee unknown 75736 Mm.261006 NM_029410 ENSMUSG00000003190 Bcl2l12 2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12 - 7|7 B3 BCL2-like 12 (proline rich) protein-coding 11352 Mm.329515 NM_009595 ENSMUSG00000026596 Abl2 AA536808|Abll|Arg - 1 G3|1 67.71 cM v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) protein-coding 27483 52S - - - DNA segment, 52S unknown 258471 Mm.377520 NM_146478 ENSMUSG00000045528 Olfr891 MOR170-9 - 9|9 A5.1 olfactory receptor 891 protein-coding 258259 Mm.377398 NM_207152 ENSMUSG00000095218 Olfr1338 MOR259-4P|MOR259-9|Olfr1524-ps1 - 4|4 D2.1 olfactory receptor 1338 protein-coding 100039359 Mm.491565 Gm10399 - - 5|5 F predicted gene 10399 unknown 73358 Mm.437192 NR_045919 ENSMUSG00000085889 1700054M17Rik - - 2|2 E5 RIKEN cDNA 1700054M17 gene ncRNA 620313 Gm6142 EG620313|Tbca16 - 16|16 A1 tubulin cofactor a pseudogene pseudo 100035257 Mohg3 - - - modifier of hg 3 unknown 100217462 NR_028556 ENSMUSG00000093289 Snord92 MBII-316 - 17 E1.3|17 small nucleolar RNA, C/D box 92 snoRNA 100035328 Ntta2 - - 12 17.99 cM neurotensin transcript abundance 2 unknown 108167783 XR_001779691 Gm46201 - - 10 C1|10 predicted gene, 46201 ncRNA 100035451 Psrs1 Psd1 - - psoriasis susceptibility 1 unknown 75750 Mm.7446 NM_029415 ENSMUSG00000029321 Slc10a6 8430417G17Rik|C78479|Soat - 5|5 E5 solute carrier family 10 (sodium/bile acid cotransporter family), member 6 protein-coding 105246569 XR_877841 Gm41842 - - 19 C2|19 predicted gene, 41842 ncRNA 234421 Mm.211247 NM_001080812 ENSMUSG00000074240 Cib3 C730014M21Rik|Gm1107|KIP3 - 8|8 B3.3 calcium and integrin binding family member 3 protein-coding 19473 Rb(11.13)6Tu Rb6Tu - - Robertsonian translocation, Chr 11 and 13, Tubingen 6 other 503550 Mm.376476 NM_001012520 ENSMUSG00000067610 Klri1 - - 6|6 F3 killer cell lectin-like receptor family I member 1 protein-coding 11606 Mm.301626 NM_007428 ENSMUSG00000031980 Agt AI265500|AngI|AngII|Aogen|Serpina8 - 8 E2|8 72.81 cM angiotensinogen (serpin peptidase inhibitor, clade A, member 8) protein-coding 19784 NR_004439 Rprl2 RPRH3|Rmrp3 - 3|3 A3 ribonuclease P RNA-like 2 ncRNA 100861479 NR_046126 ENSMUSG00000094801 n-R5s113 Rn5s9 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 113 rRNA 105247026 XR_880771 Gm42208 Gm43204 - 3 B|3 predicted gene, 42208 ncRNA 62765 D16Mit185 - - 16 35.92 cM DNA segment, Chr 16, Massachusetts Institute of Technology 185 unknown 71681 Mm.415345 0610009K14Rik - - 4|4 RIKEN cDNA 0610009K14 gene protein-coding 69219 Mm.234247 NM_026993 ENSMUSG00000028194 Ddah1 2410006N07Rik|2510015N06Rik|AI987801|AW050362 - 3|3 H2 dimethylarginine dimethylaminohydrolase 1 protein-coding 102639343 Mm.292075 XR_388154 Gm35677 - - 8 E1|8 predicted gene, 35677 ncRNA 100462741 Gm17241 - - 15 F1|15 56.13 cM ribosomal protein S27 pseudogene pseudo 112045 Kwq5 - - - kidney weight QTL 5 unknown 100628574 NR_039551 ENSMUSG00000093140 Mir28b mmu-mir-28b - 8 B3.3|8 35.08 cM microRNA 28b ncRNA 668773 Gm9349 EG668773 - 17|17 E2 predicted gene 9349 pseudo 108169152 XM_017321864 Gm46965 - - 6 D1|6 predicted gene, 46965 protein-coding 13269 Del(13)52H Del52H - - deletion, Chr 13, Harwell 52 other 723890 NR_029820 ENSMUSG00000065458 Mir181b-1 Mirn181b-1|mir-181b-1 - 1|1 E4 microRNA 181b-1 ncRNA 105245307 XR_001779655 Gm40782 - - 10 D2|10 predicted gene, 40782 ncRNA 74271 Mm.141337 NM_028847 ENSMUSG00000061392 Mageb5 1700056A17Rik|mMage-b5 - X|X C2 melanoma antigen, family B, 5 protein-coding 61355 D4Mit154 - - 4 44.84 cM DNA segment, Chr 4, Massachusetts Institute of Technology 154 unknown 108167660 XR_001779209 Gm25640 - - 9 C|9 predicted gene, 25640 ncRNA 111784 Iapls1-14 - - - intracisternal A particle, lymphocyte specific 1-14 other 545279 Mm.329729 NM_001034898 ENSMUSG00000067571 Ms4a15 E530011F12Rik|Gm1286 - 19|19 A membrane-spanning 4-domains, subfamily A, member 15 protein-coding 17995 Mm.29842 NM_133666 ENSMUSG00000037916 Ndufv1 CI-51kD - 19 3.72 cM|19 A NADH dehydrogenase (ubiquinone) flavoprotein 1 protein-coding 102639005 Mm.444560 Gm16096 - - 9|9 21.52 cM predicted gene 16096 ncRNA 259036 Mm.377801 NM_147034 ENSMUSG00000073898 Olfr713 MOR263-1|P3 - 7|7 E3 olfactory receptor 713 protein-coding 102638641 Mm.487544 Gm35156 - - X|X predicted gene, 35156 ncRNA 111043200 Gm46998 - - 12|12 predicted gene 46998 pseudo 100036321 Vacq2 - - - voluntary alcohol consumption QTL 2 unknown 671692 Gm11718 - - 11|11 E1 actin, gamma, cytoplasmic 1 pseudogene pseudo 258652 Mm.377615 NM_146658 ENSMUSG00000068819 Olfr1131 MOR177-4 - 2|2 D olfactory receptor 1131 protein-coding 383773 Gm11469 Ppia-ps2_2197.1 - 2|2 H3 peptidyl-prolyl cis-trans isomerase A pseudogene 2_2197.1 pseudo 258554 Mm.334991 NM_146561 ENSMUSG00000049028 Olfr873 MOR145-2 - 9|9 A3 olfactory receptor 873 protein-coding 19537 Rb(4.11)12Rma Rb12Rma - - Robertsonian translocation, Chr 4 and 11, Universita di Roma 12 other 27214 Mm.292470 NM_013726 ENSMUSG00000002297 Dbf4 AA545217|Ask - 5|5 A1 DBF4 zinc finger protein-coding 269472 Mm.379456 LOC269472 - - 3|3 F2.2 uncharacterized LOC269472 unknown 117077 Actre4 Actre4q - 2 59.4 cM activity response to ethanol 4 unknown 235584 Mm.275584 NM_153459 ENSMUSG00000053716 Dusp7 AU015694|Mkpx|Pyst2 - 9|9 F1 dual specificity phosphatase 7 protein-coding 73288 Mm.45539 NM_024260 ENSMUSG00000001376 Vps50 1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861 - 6|6 A1 VPS50 EARP/GARPII complex subunit protein-coding 246179 Mm.247210 NM_139309 ENSMUSG00000028414 Fktn D830030O17Rik|Fcmd - 4 B2|4 28.74 cM fukutin protein-coding 102638334 XR_375719 Gm34924 - - 3 E1|3 predicted gene, 34924 ncRNA 108168632 XM_017318841 LOC108168632 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 110549 Fdpsl5 - - - farnesyl diphosphate synthetase-like 5 protein-coding 102467253 n-TRtct2 n-Tr22 - 3 G1|3 nuclear encoded tRNA arginine 2 (anticodon TCT) tRNA 11548 Mm.39086 NM_007416 ENSMUSG00000050541 Adra1b [a]1b - 11 B1.1|11 25.81 cM adrenergic receptor, alpha 1b protein-coding 102632116 XR_388196 Gm30273 - - 8 E2|8 predicted gene, 30273 ncRNA 100503185 Mm.366650 NM_001255991 ENSMUSG00000111375 Btbd8 EG627196|Gm16115 - 5|5 E5 BTB (POZ) domain containing 8 protein-coding 227333 Mm.277217 NM_177646 ENSMUSG00000070738 Dgkd AI841987|D330025K09|DGKdelta|dgkd-2 - 1|1 D diacylglycerol kinase, delta protein-coding 61584 DXMit129 - - X 56.22 cM DNA segment, Chr X, Massachusetts Institute of Technology 129 unknown 387339 Mm.377902 NM_199153 ENSMUSG00000056901 Tas2r102 Tas2r2|mGR02|mt2r51 - 6 G1|6 64.03 cM taste receptor, type 2, member 102 protein-coding 102636888 XR_379266 Gm33838 - - 9 A4|9 predicted gene, 33838 ncRNA 75653 1700016H03Rik - - 19|19 RIKEN cDNA 1700016H03 gene protein-coding 105244537 XR_867576 Gm40130 - - 3 G1|3 predicted gene, 40130 ncRNA 108168810 XR_001783531 Gm46773 - - 2 H2|2 predicted gene, 46773 protein-coding 258817 Mm.377706 NM_146820 ENSMUSG00000051182 Olfr655 MOR38-1 - 7|7 E3 olfactory receptor 655 protein-coding 219033 Mm.343899 NM_177544 ENSMUSG00000060615 Ang4 Raa4|Rnase5d - 14|14 C1 angiogenin, ribonuclease A family, member 4 protein-coding 73381 Mm.272746 NM_027022 ENSMUSG00000074127 Cmtm2a 1700001K04Rik|1700041N15Rik|1700063K20Rik|AI449770|ARR19|C32|CKLF3|CKLF4|CKLF5|Cklf|Cklf1|Cklfsf2-1b|Cklfsf2a|UCK-1 - 8|8 D3 CKLF-like MARVEL transmembrane domain containing 2A protein-coding 319151 Mm.261658 NM_178205 ENSMUSG00000069273 Hist1h3e H3-f|H3.1 - 13|13 A3.1 histone cluster 1, H3e protein-coding 227231 Mm.343942 NM_001080809 ENSMUSG00000025991 Cps1 4732433M03Rik|CPS|D1Ucla3 - 1 C3|1 33.75 cM carbamoyl-phosphate synthetase 1 protein-coding 58217 Mm.248352 NM_021406 ENSMUSG00000042265 Trem1 - - 17|17 C triggering receptor expressed on myeloid cells 1 protein-coding 240505 Mm.329622 NM_001033342 ENSMUSG00000024769 Cdc42bpg BC046418|MRCKgamma - 19|19 A CDC42 binding protein kinase gamma (DMPK-like) protein-coding 101055724 LOC101055724 - - 3 F2.1 mitochondrial ribosomal protein S16 pseudogene pseudo 18119 Mm.57195 NM_013611 ENSMUSG00000037171 Nodal Tg.413d - 10 B4|10 32.21 cM nodal protein-coding 666628 Gm8199 EG666628 - X|X F2 ribosomal protein, large, P0 pseudogene pseudo 105244303 XR_866754 Gm14095 - - 2 F2|2 64.46 cM predicted gene 14095 ncRNA 105247045 LOC105247045 - - 5 A3 protein archease pseudogene pseudo 282622 D15Kus3 - - - DNA segment, Chr 15, Kusakabe 3 unknown 77395 Mm.179935 9530018H14Rik lncRNA-HIT - 6|6 RIKEN cDNA 9530018H14 gene protein-coding 108168651 XM_017318862 LOC108168651 - - Y D Y-linked testis-specific protein 1-like protein-coding 78017 Mm.243837 4930504D19Rik - - 6|6 C3 RIKEN cDNA 4930504D19 gene unknown 100503099 Mm.125570 XR_872964 Gm19554 - - 12 E|12 56.21 cM predicted gene, 19554 ncRNA 102640356 Mm.419046 NR_155871 Gm17059 - - 10 B4|10 29.62 cM predicted gene 17059 ncRNA 664725 Mm.45302 NM_001039943 Cypt7 - - - cysteine-rich perinuclear theca 7 protein-coding 105246370 Gm29200 - - 18|18 predicted gene 29200 ncRNA 17174 Mm.1213 NM_008555 ENSMUSG00000022887 Masp1 AW048060|CCPII|Crarf|Masp1/3 - 16|16 B1 mannan-binding lectin serine peptidase 1 protein-coding 101055805 LOC101055805 - - 14 A3 60S ribosomal protein L31 pseudogene pseudo 100417402 Gm14695 - - X|X A7.3 X-linked lymphocyte-regulated 5C pseudogene pseudo 102636381 Gm33463 - - 4|4 predicted gene, 33463 ncRNA 100034808 Cia13 mCia10 - - collagen induced arthritis QTL 13 unknown 100035778 Eae30 - - - experimental allergic encephalomyelitis susceptibility 30 unknown 97959 Mm.423230 C78532 - - - expressed sequence C78532 protein-coding 58176 Mm.103777 NM_021375 ENSMUSG00000104445 Rhbg - - 3 F1|3 38.78 cM Rhesus blood group-associated B glycoprotein protein-coding 16371 Mm.316056 NM_010573 ENSMUSG00000060969 Irx1 - - 13 C1|13 38.43 cM Iroquois homeobox 1 protein-coding 105245919 XR_875154 Gm41299 - - 15 B3.1|15 predicted gene, 41299 ncRNA 109839 Lvp1 Lvp-1 - - major liver protein 1 protein-coding 102632863 XR_386791 Gm30826 - - 19 D2|19 predicted gene, 30826 ncRNA 100417496 Gm17072 - - 8|8 C2 voltage-dependent anion channel 1 pseudogene pseudo 102636168 XR_376281 Gm33311 - - 3 H4|3 predicted gene, 33311 ncRNA 18218 Mm.39725 NM_008748 ENSMUSG00000037887 Dusp8 5530400B01Rik|AI593498|Nttp1 - 7 F5|7 87.59 cM dual specificity phosphatase 8 protein-coding 100040291 Gm2693 - - 1 A4|1 predicted gene 2693 pseudo 53123 121D10L - - - DNA segment, 121D10L unknown 102633285 XR_374879 Gm31146 - - 2 E4|2 predicted gene, 31146 ncRNA 20282 Scp2-ps2 - - 9 F4|9 73.92 cM sterol carrier protein 2, pseudogene 2 pseudo 209086 Mm.196013 NM_010156 ENSMUSG00000047735 Samd9l AA175286|ESTM25|mKIAA2005 - 6 A1|6 1.76 cM sterile alpha motif domain containing 9-like protein-coding 100504675 Mm.139165 XR_382910 Gm15327 - - 13 D2.2|13 63.49 cM predicted gene 15327 ncRNA 16581 Mm.378950 NM_010630 ENSMUSG00000004187 Kifc2 - - 15 D3|15 36.23 cM kinesin family member C2 protein-coding 319229 Mm.189223 NM_001012322 ENSMUSG00000026387 Sctr 6530402O03Rik - 1|1 E2.3 secretin receptor protein-coding 30840 Mm.275279 NM_013909 ENSMUSG00000022559 Fbxl6 AU021795|Fbl6 - 15|15 D3 F-box and leucine-rich repeat protein 6 protein-coding 69106 Mm.216502 NM_026942 ENSMUSG00000032333 Stoml1 1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72 - 9|9 B stomatin-like 1 protein-coding 100036298 Gpdc3 - - 9 40.88 cM G protein deficiency-induced colitis 3 unknown 112018 Bw4 - - 11 50.86 cM body weight QTL 4 unknown 791343 Mm.29122 Gm9905 - - - predicted gene 9905 unknown 102639380 XR_378176 Gm35707 - - 6 G3|6 predicted gene, 35707 ncRNA 231712 Mm.20488 NM_172275 ENSMUSG00000042726 Trafd1 1110008K06Rik|Fln29 - 5|5 F TRAF type zinc finger domain containing 1 protein-coding 100416225 Gm17981 - - 7|7 A2 predicted gene, 17981 pseudo 105246848 XR_879495 ENSMUSG00000084876 Gm14965 - - 19 A|19 4.61 cM predicted gene 14965 ncRNA 52498 D15Ertd180e - - 15 3.29 cM DNA segment, Chr 15, ERATO Doi 180, expressed unknown 11876 Mm.56897 NM_009711 ENSMUSG00000028539 Artn neublastin - 4|4 D2.1 artemin protein-coding 100035223 Abfp5 - - - abdominal fat percentage 5 unknown 102640195 XR_376070 Gm36322 - - 3 G3|3 predicted gene, 36322 ncRNA 620725 Gm6174 EG620725 - 17|17 E1.1 fibrillarin pseudogene pseudo 474145 Mm.263483 NM_001005860 ENSMUSG00000059639 Clec4a4 Dcir2 - 6|6 F2 C-type lectin domain family 4, member a4 protein-coding 626904 Mm.126787 NR_040771 ENSMUSG00000106799 Gm20756 - - 6|6 A3.1 predicted gene, 20756 ncRNA 320313 Mm.446151 8030466E21Rik - - 3|3 RIKEN cDNA 8030466E21 gene protein-coding 102639620 XR_386269 Gm35887 - - 18 E1|18 predicted gene, 35887 ncRNA 102633245 NR_155864 Gm15723 - - 10 D2|10 62.5 cM predicted gene 15723 ncRNA 16568 Mm.88694 NM_008443 ENSMUSG00000018395 Kif3a Kif3|Kifl|Kns3 - 11 B1.3|11 31.97 cM kinesin family member 3A protein-coding 18488 Mm.435479 NM_008779 ENSMUSG00000030075 Cntn3 Pang - 6 D3|6 47.52 cM contactin 3 protein-coding 102467364 n-TPagg2 n-Tp2 - 1 H2.3|1 nuclear encoded tRNA proline 2 (anticodon AGG) tRNA 75006 4930486A15Rik - - 11|11 RIKEN cDNA 4930486A15 gene protein-coding 100503077 Gm19540 - - 12 D3|12 42.8 cM uncharacterized protein C1orf103 homolog pseudo 102637993 XR_376572 Gm34669 - - 4 D1|4 predicted gene, 34669 ncRNA 15162 Mm.715 NM_010407 ENSMUSG00000003283 Hck AI849071|Bmk - 2 H1|2 75.41 cM hemopoietic cell kinase protein-coding 67585 Mm.84751 NR_045469 ENSMUSG00000114384 4930455J16Rik - - 13|13 B1 RIKEN cDNA 4930455J16 gene ncRNA 102633102 XR_373898 Gm31011 - - 1 H6|1 predicted gene, 31011 ncRNA 100126435 9430073C21Rik - - 11|11 Riken cDNA 9430073C21 gene ncRNA 105244114 Mm.25504 Gm13610 - - 2|2 22.09 cM predicted gene 13610 ncRNA 666794 Mm.38269 NM_001081425 ENSMUSG00000038132 Rbm24 6330546B05Rik|AI606861 - 13|13 A5 RNA binding motif protein 24 protein-coding 242523 Mm.130167 NM_175647 ENSMUSG00000043753 Dmrta1 Dmrt4 - 4|4 C4 doublesex and mab-3 related transcription factor like family A1 protein-coding 212139 Mm.41424 NM_145970 ENSMUSG00000036686 Cc2d1a BC016188|Freud-1|Tape - 8|8 C2 coiled-coil and C2 domain containing 1A protein-coding 102639170 LOC102639170 - - 14 B protein CDV3 pseudogene pseudo 62012 D6Mit368 - - 6 62.44 cM DNA segment, Chr 6, Massachusetts Institute of Technology 368 unknown 100041482 Gm3365 - - 8 B3.3|8 cadherin 11 pseudogene pseudo 27847 D0Nds7 - - - DNA segment, Nuffield Department of Surgery 7 unknown 100417823 Gm18848 - - 12|12 E predicted gene, 18848 pseudo 100303738 Mm.479389 NR_028577 ENSMUSG00000092130 D030025P21Rik - - 12|12 D1 RIKEN cDNA D030025P21 gene ncRNA 105247631 LOC105247631 - - - uncharacterized LOC105247631 ncRNA 666588 Gm8178 EG666588 - 4 E1|4 high mobility group box 1-like pseudogene pseudo 62358 D1Mit463 - - 1 97.11 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 463 unknown 23882 Mm.281298 NM_011817 ENSMUSG00000021453 Gadd45g AI327420|C86281|CR6|DDIT2|OIG37 - 13|13 A5 growth arrest and DNA-damage-inducible 45 gamma protein-coding 624121 Mm.387211 NM_001037920 Gm6471 EG624121 - 7 F5|7 predicted gene 6471 unknown 108511952 Gata2r6 - - 6 D Gata2R6 erythroid cis-regulatory module biological-region 102632679 XR_001785327 Gm30688 - - 6 D1|6 predicted gene, 30688 ncRNA 68522 1110013H19Rik - - 15|15 RIKEN cDNA 1110013H19 gene protein-coding 61607 D9Mit253 - - 9 21.46 cM DNA segment, Chr 9, Massachusetts Institute of Technology 253 unknown 668575 Gm9251 EG668575 - 12 F2|12 high mobility group box 2 pseudogene pseudo 109905 Mm.101922 NM_145541 ENSMUSG00000068798 Rap1a AI848598|G-22K|Krev-1|Rap1 - 3 F2.2|3 46.45 cM RAS-related protein 1a protein-coding 19548 Rb(4.14)8H Rb8H - - Robertsonian translocation, Chr 4 and 14, Harwell 8 other 50783 Mm.248188 NM_015816 ENSMUSG00000031848 Lsm4 - - 8|8 B3.3 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 225264 Gm4837 EG225264 - 18|18 A2 pyruvate kinase, muscle pseudogene pseudo 108168518 Gm46708 - - Y C1|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 100041759 Mm.480304 NM_001177486 ENSMUSG00000079116 Gm15293 - - 8|8 A2 predicted gene 15293 protein-coding 100417104 Gm18399 - - 18|18 A1 ribonuclease H2, subunit B pseudogene pseudo 102640391 LOC102640391 - - 2 E3 60S ribosomal protein L39 pseudogene pseudo 111738 Mpmv12 Mpmv-12 - - modified polytropic murine leukemia virus 12 other 102637666 XR_379003 Gm34420 - - 8 B2|8 predicted gene, 34420 ncRNA 258124 Olfr1473-ps1 MOR202-25P - 19|19 A olfactory receptor 1473, pseudogene 1 pseudo 111716 Mpmv29 - - - modified polytropic murine leukemia virus 29 other 61149 DXMit223 - - X 78.31 cM DNA Segment, Chr X Massachusetts Institute of Technology 223 unknown 105242403 LOC105242403 - - X A2 X-linked lymphocyte-regulated protein PM1-like pseudo 109280021 LOC109280021 Mm156 - - VISTA enhancer mm156 biological-region 234365 Mm.252521 NM_001353930 Yjefn3 Gm175|YjeF_N3|hYjeF_N3 - 8|8 B3.3 YjeF N-terminal domain containing 3 protein-coding 22260 Mm.968 NM_009473 ENSMUSG00000060601 Nr1h2 AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2 - 7|7 B3 nuclear receptor subfamily 1, group H, member 2 protein-coding 11886 Mm.22547 NM_019734 ENSMUSG00000031591 Asah1 2310081N20Rik|AC|Asah - 8|8 A4 N-acylsphingosine amidohydrolase 1 protein-coding 108167375 XR_001782178 LOC108167375 - - 17 A1 uncharacterized LOC108167375 ncRNA 229707 Mm.278643 NM_153563 ENSMUSG00000014601 Strip1 6330569M22Rik|6530401O14Rik|Fam40a - 3|3 F2.3 striatin interacting protein 1 protein-coding 67966 Mm.288072 NM_026479 ENSMUSG00000018239 Zcchc10 2410141K03Rik|AA675321|D11Ertd416e - 11 B1.3|11 31.92 cM zinc finger, CCHC domain containing 10 protein-coding 227620 Mm.33797 NM_001033293 ENSMUSG00000026956 Uap1l1 5730445F03Rik - 2|2 A3 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 protein-coding 111381 Mtv9 Mtv-9 - - mammary tumor virus locus 9 other 27793 D2Dcr4 - - - DNA segment, Chr 2, Derry C. Roopenian 4 unknown 100049715 NR_029641 ENSMUSG00000078008 Mir291a Mirn291a|mir-291a - 7 A1|7 microRNA 291a ncRNA 436208 Gm5757 EG436208 - X|X A7.3 YKT6 homolog pseudogene pseudo 102634213 XR_375264 Gm31852 - - 2 H3|2 predicted gene, 31852 ncRNA 102465609 NR_105974 ENSMUSG00000099105 Mir7007 Gm27897|mmu-mir-7007 - 3|3 A2 microRNA 7007 ncRNA 105244314 XR_866785 Gm39948 - - 2 F3|2 predicted gene, 39948 ncRNA 77809 Mm.29681 NM_029985 ENSMUSG00000028617 Lrrc42 A930011F22Rik|AA536996 - 4|4 C7 leucine rich repeat containing 42 protein-coding 77731 6720477C19Rik - - 6|6 RIKEN cDNA 6720477C19 gene protein-coding 320993 E030003N13Rik - - 10|10 RIKEN cDNA E030003N13 gene protein-coding 102635131 XR_390857 Gm32549 - - 4 D3|4 predicted gene, 32549 ncRNA 22026 Mm.87062 NM_011630 ENSMUSG00000005893 Nr2c2 TAK1|Tr4|mKIAA4145 - 6|6 D1 nuclear receptor subfamily 2, group C, member 2 protein-coding 108509 Ms13-8 Ms13-Ps8 - - minisatellite 13-8 detected by M13 phage probe other 102638174 XR_385823 Gm34801 - - 17 E4|17 predicted gene, 34801 ncRNA 67529 Mm.333499 NM_026218 ENSMUSG00000040242 Fgfr1op2 1500031J01Rik - 6|6 G3 FGFR1 oncogene partner 2 protein-coding 102466801 NR_106045 ENSMUSG00000099062 Mir7077 Gm27774|mmu-mir-7077 - 8|8 E1 microRNA 7077 ncRNA 52198 D3Ertd270e - - 3 23.95 cM DNA segment, Chr 3, ERATO Doi 270, expressed unknown 666377 XM_006504240 Gm8069 EG666377 - 5|5 C1 predicted pseudogene 8069 protein-coding 433292 Mm.333709 NM_001011684 ENSMUSG00000067604 Nms AB164466 - 1|1 B neuromedin S protein-coding 102640775 LOC102640775 - - 14 B cyclin-dependent kinases regulatory subunit 1 pseudogene pseudo 114065 Heal6 - - 7 55.69 cM wound healing/regeneration 6 unknown 493172 Vmbic3 - - 7 76.29 cM ventral midbrain iron content 3 unknown 100043843 Rps15a-ps7 Gm14166 - 2|2 G3 ribosomal protein S15A, pseudogene 7 pseudo 18012 Mm.4636 NM_010894 ENSMUSG00000034701 Neurod1 BETA2|BHF-1|Nd1|Neurod|bHLHa3 - 2 C3|2 47.58 cM neurogenic differentiation 1 protein-coding 666936 Gm14032 - - 2|2 C1.1 cathepsin B pseudogene pseudo 384408 Gm5310 EG384408 - 6|6 C1 cortactin pseudogene pseudo 217463 Mm.213991 NM_001014973 ENSMUSG00000020590 Snx13 Rgs-px1|mKIAA0713 - 12|12 A3 sorting nexin 13 protein-coding 100101419 Pbwg1.9 - - - postnatal body weight growth 1.9 unknown 108167678 XR_001779265 Gm46127 - - 9 E3.3|9 predicted gene, 46127 ncRNA 105243235 Mm.405417 XR_878998 Gm26721 - - 8 C2|8 predicted gene, 26721 ncRNA 75465 Mm.23114 NM_029297 ENSMUSG00000034467 Dynlrb2 1700009A04Rik|DNLC2B|Dncl2b - 8|8 E1 dynein light chain roadblock-type 2 protein-coding 78564 9530078K11Rik - - 7|7 RIKEN cDNA 9530078K11 gene protein-coding 546534 Gm5954 EG546534 - 12|12 A1.3 predicted gene 5954 protein-coding 234311 Mm.275233 NM_144928 ENSMUSG00000037921 Ddx60 9830118M07 - 8|8 B3.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 protein-coding 108168107 XR_001781018 Gm46435 - - 13 C3|13 predicted gene, 46435 ncRNA 11758 Mm.186185 NM_007453 ENSMUSG00000026701 Prdx6 1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2 - 1 H2.1|1 69.75 cM peroxiredoxin 6 protein-coding 100862446 XM_003689208 LOC100862446 - - - ferritin light chain 1 protein-coding 102631539 XR_388734 Gm29851 - - 11 B3|11 predicted gene, 29851 ncRNA 108167671 LOC108167671 - - 9 E3.1 transcription elongation factor B polypeptide 1 pseudogene pseudo 66901 Mm.441140 NM_025834 ENSMUSG00000031445 Proz 1300015B06Rik - 8|8 A1.1 protein Z, vitamin K-dependent plasma glycoprotein protein-coding 12967 Mm.425031 NM_007776 ENSMUSG00000067299 Crygd Aey4|Cryg-1|DGcry-1|Lop12 - 1 C2|1 32.8 cM crystallin, gamma D protein-coding 102641066 LOC102641066 - - - HLA class I histocompatibility antigen, B-14 alpha chain-like pseudo 105242673 XR_869149 Gm38824 - - 6 C1|6 predicted gene, 38824 ncRNA 55932 Mm.439718 NM_018734 ENSMUSG00000028268 Gbp3 AW228655|GBP-3|GBP-4|Gbp4 - 3|3 H1 guanylate binding protein 3 protein-coding 109944 Tex4 - - - testis expressed gene 4 protein-coding 66407 Mm.195628 NM_025544 ENSMUSG00000028861 Mrps15 1500003E24Rik|2410002B11Rik|Mprs15 - 4|4 D2.2 mitochondrial ribosomal protein S15 protein-coding 52363 D9Ertd596e - - - DNA segment, Chr 9, ERATO Doi 596, expressed unknown 12224 Mm.30262 NM_009769 ENSMUSG00000005148 Klf5 4930520J07Rik|Bteb2|CKLF|IKLF - 14|14 E2.2 Kruppel-like factor 5 protein-coding 77723 Mm.402301 Dnah2os 6030455H03Rik - 11|11 dynein, axonemal, heavy chain 2, opposite strand protein-coding 257962 Mm.377316 NM_001011789 ENSMUSG00000059610 Olfr222 MOR256-45P - 11|11 B1.3 olfactory receptor 222 protein-coding 78316 Mm.389385 XR_866907 ENSMUSG00000087547 Platr27 2410019O14Rik - 2|2 H1 pluripotency associated transcript 27 ncRNA 100036399 Bw32 Bw26 - - body weight QTL 32 unknown 100043488 XR_001779656 Gm4473 - - 10 D2|10 predicted gene 4473 unknown 21218 T(5;16)53H T53H - - reciprocal translocation, Chr 5 and 16, Harwell 53 other 622645 Mm.86422 NM_001206661 ENSMUSG00000095407 Tmem200c EG622645|Gm6338 - 17|17 E1.2 transmembrane protein 200C protein-coding 61855 D1Mit385 - - 1 48.6 cM DNA segment, Chr 1, Massachusetts Institute of Technology 385 unknown 20878 Mm.249363 NM_011497 ENSMUSG00000027496 Aurka AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6 - 2 H3|2 94.84 cM aurora kinase A protein-coding 102635383 XR_384792 Gm32740 - - 16 B2|16 predicted gene, 32740 ncRNA 53011 CA9.2 - - - DNA segment, CA9.2 unknown 492864 Eila1 - - 1 81.63 cM ethanol induced locomotor activity 1 unknown 110749 Mm.274222 NM_028083 ENSMUSG00000022945 Chaf1b 2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7 - 16 C4|16 54.96 cM chromatin assembly factor 1, subunit B (p60) protein-coding 102632237 XR_378804 Gm30370 - - 8 A2|8 predicted gene, 30370 ncRNA 114564 Mm.362644 NM_033616 ENSMUSG00000062783 Csprs D1Lub1|HSR - 8 B1.3|1 component of Sp100-rs protein-coding 667586 Mm.480251 NM_001166755 ENSMUSG00000094934 Vmn1r163 EG667586|Gm8716 - 7|7 A3 vomeronasal 1 receptor 163 protein-coding 102636858 XR_381573 Gm33811 - - 12 B3|12 predicted gene, 33811 ncRNA 232959 Mm.377248 NM_206868 ENSMUSG00000062598 Vmn1r178 Gm473|V1rd13 - 7|7 A3 vomeronasal 1 receptor 178 protein-coding 18823 Mm.1268 NM_011123 ENSMUSG00000031425 Plp1 DM20|Plp|jimpy|jp|msd|rsh - X F1|X 59.1 cM proteolipid protein (myelin) 1 protein-coding 100309 AU022479 - - - expressed sequence AU022479 unknown 211702 Gm4772 EG211702 - X|X B ring finger protein pseudogene pseudo 52840 Mm.256927 NM_026797 ENSMUSG00000017734 Dbndd2 1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724 - 2 H3|2 85.17 cM dysbindin (dystrobrevin binding protein 1) domain containing 2 protein-coding 117070 D18Tlj1e - - - DNA segment, Chr 18, Teresa L. Johnson-Pais 1, expressed unknown 102632936 Gm30885 - - 9|9 predicted gene, 30885 ncRNA 723836 NR_029602 ENSMUSG00000065409 Mir30e Mirn30e|mir-30e|mmu-mir-30e - 4|4 D2.2 microRNA 30e ncRNA 270066 Mm.291461 NM_177766 ENSMUSG00000019731 Slc35e1 6030458H05|AA408278 - 8|8 B3.3 solute carrier family 35, member E1 protein-coding 105246680 XR_878434 Gm41929 - - 1 E2.1|1 predicted gene, 41929 ncRNA 62122 D12Mit98 - - 12 50.63 cM DNA segment, Chr 12, Massachusetts Institute of Technology 98 unknown 105243549 XR_880276 Gm39440 - - 11 E1|11 predicted gene, 39440 ncRNA 102638353 Arhgap27os1 Gm11641 - 11|11 67.09 cM Rho GTPase activating protein 27, opposite strand 1 ncRNA 194655 Mm.9616 NM_178357 ENSMUSG00000020653 Klf11 9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3 - 12 A1.3|12 8.49 cM Kruppel-like factor 11 protein-coding 68552 Mm.10709 NM_133697 ENSMUSG00000037822 Smim14 1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4 - 5|5 C3.1 small integral membrane protein 14 protein-coding 100306931 Gm13712 - - 2|2 D CTAGE family, member 5 pseudogene pseudo 102633873 XR_376252 Gm31596 - - 3 H3|3 predicted gene, 31596 ncRNA 75496 1700012J22Rik - - 13|13 RIKEN cDNA 1700012J22 gene protein-coding 62814 D13Mit269 - - 13 24.94 cM DNA segment, Chr 13, Massachusetts Institute of Technology 269 unknown 671927 Trav9d-1 Gm13960 - 14 C2|14 T cell receptor alpha variable 9D-1 other 22259 Mm.22690 NM_013839 ENSMUSG00000002108 Nr1h3 AU018371|LXR|RLD1|Unr1 - 2 E1|2 50.52 cM nuclear receptor subfamily 1, group H, member 3 protein-coding 434219 Mm.386948 XR_869856 Trim30c EG434219|Gm5598|Trim30-2 - 7|7 E3 tripartite motif-containing 30C unknown 71173 Mm.410791 4933426B08Rik - - 17|17 RIKEN cDNA 4933426B08 gene protein-coding 668034 Rpl19-ps9 EG668034|Gm8936|Rpl19-ps|Rpl19-rs11 - 6 C1|6 32.19 cM ribosomal protein L19, pseudogene 9 pseudo 16502 Mm.249386 NM_008421 ENSMUSG00000058975 Kcnc1 C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw - 7 B3|7 30.1 cM potassium voltage gated channel, Shaw-related subfamily, member 1 protein-coding 100503033 Mm.381112 NR_152224 Gm19519 - - 18 D3|18 32.15 cM predicted gene, 19519 ncRNA 102640343 XR_880156 Gm11513 - - 11 D|11 59.01 cM predicted gene 11513 ncRNA 19349 Mm.333233 NM_009005 ENSMUSG00000079477 Rab7 Rab7a - 6 D1|6 39.13 cM RAB7, member RAS oncogene family protein-coding 668475 Gm9191 EG668475 - 17|17 C cell division cycle 20 homolog pseudogene pseudo 108168915 XR_001784058 Gm46835 - - 3 C|3 predicted gene, 46835 ncRNA 102638739 XR_374953 Gm35231 - - 2 F1|2 predicted gene, 35231 ncRNA 13079 Mm.440407 NM_009995 ENSMUSG00000024365 Cyp21a1 21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2 - 17 B1|17 18.36 cM cytochrome P450, family 21, subfamily a, polypeptide 1 protein-coding 208104 Mm.83277 NM_133917 ENSMUSG00000038342 Mlxip AW228700|Mir|bHLHe36 - 5|5 F MLX interacting protein protein-coding 70521 5730420F10Rik - - 12|12 RIKEN cDNA 5730420F10 gene protein-coding 666800 Gm8297 EG666800 - 14|14 A1 predicted gene 8297 protein-coding 258733 Mm.377663 NM_146738 ENSMUSG00000095239 Olfr497 MOR204-9 - 7|7 E3 olfactory receptor 497 protein-coding 57866 Mm.4397 NR_033776 AA545190 - - 6|6 A1 EST AA545190 ncRNA 102640031 Mm.421441 NR_155516 Gm36201 - - 17 E1.1|17 predicted gene, 36201 ncRNA 102637093 XR_868361 Gm33993 - - 5 B3|5 predicted gene, 33993 ncRNA 73144 Mm.38166 NM_001033153 ENSMUSG00000074415 3110039I08Rik 2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg - 9|9 A5.1 RIKEN cDNA 3110039I08 gene ncRNA 72087 Mm.393328 2010015M23Rik - - 11|11 RIKEN cDNA 2010015M23 gene ncRNA 52383 Mm.394721 D1Ertd646e - - 1 70.33 cM DNA segment, Chr 1, ERATO Doi 646, expressed unknown 16176 Mm.222830 NM_008361 ENSMUSG00000027398 Il1b IL-1beta|Il-1b - 2 F1|2 62.97 cM interleukin 1 beta protein-coding 52766 D1Bwg0348e - - - DNA segment, Chr 1, Brigham & Women's Genetics 0348 expressed unknown 385355 Gm5387 EG385355 - X|X A5 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 pseudogene pseudo 108168328 XR_001782163 Gm46585 - - 17 A1|17 predicted gene, 46585 ncRNA 67008 Mm.252918 NM_025904 ENSMUSG00000075054 Yae1d1 1600012F09Rik - 13|13 A2 Yae1 domain containing 1 protein-coding 102634110 XR_387504 Gm31772 - - 1 G3|1 predicted gene, 31772 ncRNA 29833 Del(11)12Brd - - - deletion, Chr 11, Bradley 12 other 666758 Gm8277 EG666758 - 13|13 A3.3 high mobility group box 1-like pseudogene pseudo 665848 Mm.478783 NM_001161802 Zscan4e EG665848 - 7|7 A1 zinc finger and SCAN domain containing 4E pseudo 19744 Mm.319175 NM_053075 ENSMUSG00000028945 Rheb Rheb1 - 5|5 A3 Ras homolog enriched in brain protein-coding 102637438 XR_382521 Gm34245 - - 13 B1|13 predicted gene, 34245 ncRNA 102639301 Gm35645 - - 4|4 predicted gene, 35645 ncRNA 109773 Prot - - - proline transporter protein-coding 111473 Xmmv9 Env-9|Xmmv-61|Xmmv-9|Xp-20 - - xenotropic-MCF leukemia virus 9 other 21239 T(6;7)17Ad T17Ad - - reciprocal translocation, Chr 6 and 7, Adler 17 other 105244871 XR_001785370 Gm40402 - - 6 F3|6 predicted gene, 40402 ncRNA 108577 Iap3ra4 - - - intracisternal A-type particle, U3 region, SINE repeat a-4 other 72102 Mm.24007 NM_028099 ENSMUSG00000030002 Dusp11 2010300F21Rik|AI481497 - 6|6 C3 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) protein-coding 493093 Abbp4 - - - A/J and C57BL/6 blood pressure 4 unknown 100040939 Gm11354 - - 13|13 A3.1 predicted gene 11354 pseudo 668599 Ighv1-86 EG668599|Gm9262 - 12 F2|12 immunoglobulin heavy variable 1-86 other 111442 Emv54 Emv-54 - - endogenous ecotropic MuLV 54 other 16594 Mm.271648 NM_008451 ENSMUSG00000024862 Klc2 8030455F02Rik|AW212649|KLC 2|KLC-2 - 19 A|19 4.25 cM kinesin light chain 2 protein-coding 667394 Gm8606 EG667394 - X|X F3 ribosomal protein L6 pseudogene pseudo 102639364 Gm35694 - - 4|4 predicted gene, 35694 ncRNA 665145 Gm7516 EG665145 - 1 C5|1 ribosomal protein SA pseudogene pseudo 111509 Pmv5 Pmv-5 - - polytropic murine leukemia virus 5 other 545929 Mm.335671 NM_001034904 ENSMUSG00000095976 Gm5891 EG545929 - 7|7 A3 predicted gene 5891 protein-coding 108167373 XR_001781914 Gm45967 - - 16 C1.1|16 predicted gene, 45967 ncRNA 258488 Mm.377530 NM_146495 ENSMUSG00000094197 Olfr474 MOR204-20 - 7|7 E3 olfactory receptor 474 protein-coding 676712 Gm9687 - - 1|1 G1 ribosomal protein S8 pseudogene pseudo 28185 Mm.196933 NM_138599 ENSMUSG00000022752 Tomm70a 2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719 - 16 C1.1|16 34.22 cM translocase of outer mitochondrial membrane 70A protein-coding 52144 Mm.442261 D7Ertd661e - - 7 8.99 cM DNA segment, Chr 7, ERATO Doi 661, expressed unknown 105246030 XR_875620 Gm41392 - - 15 F1|15 predicted gene, 41392 ncRNA 102633211 XR_391428 Gm31097 - - 7 B3|7 predicted gene, 31097 ncRNA 258397 Mm.377481 NM_146402 ENSMUSG00000093804 Olfr1303 MOR245-7|Olfr276|Olfr276-ps1 - 2|2 E3 olfactory receptor 1303 protein-coding 16579 Mm.4651 NM_010629 ENSMUSG00000026585 Kifap3 KAP-3|KAP3|SMAP - 1|1 H2.1 kinesin-associated protein 3 protein-coding 330319 Mm.434326 NM_001167860 ENSMUSG00000086040 Wipf3 9030621G03|BQ952480 - 6|6 B3 WAS/WASL interacting protein family, member 3 protein-coding 105246303 XR_876902 Gm41607 - - 17 E1.1|17 predicted gene, 41607 ncRNA 11536 Mm.2857 NM_007412 ENSMUSG00000058396 Gpr182 AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW - 10 D3|10 75.07 cM G protein-coupled receptor 182 protein-coding 229906 Mm.271756 NM_145546 ENSMUSG00000028271 Gtf2b - - 3|3 H1 general transcription factor IIB protein-coding 100418001 Gm20954 - - 1|1 A5 chaperonin containing Tcp1, subunit 8 (theta) pseudogene pseudo 27377 Mm.23335 NM_013771 ENSMUSG00000026775 Yme1l1 FtsH1|Ftsh - 2|2 A3 YME1-like 1 (S. cerevisiae) protein-coding 666072 Gm7916 EG666072 - X|X A5 predicted gene 7916 pseudo 61688 D6Mit258 - - 6 66.53 cM DNA segment, Chr 6, Massachusetts Institute of Technology 258 unknown 60778 D3Mit17 - - 3 67.53 cM DNA segment, Chr 3, Massachusetts Institute of Technology 17 unknown 668603 Gm9264 EG668603 - 14|14 E1 ribosomal protein L17 pseudogene pseudo 257667 Mm.377271 NM_146267 ENSMUSG00000042801 Olfr769 MOR114-14 - 10|10 D3 olfactory receptor 769 protein-coding 76378 Mm.23515 NM_030744 ENSMUSG00000022832 Ropn1 1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin - 16|16 B3 ropporin, rhophilin associated protein 1 protein-coding 107035 Mm.21295 NM_134136 ENSMUSG00000042211 Fbxo38 6030410I24Rik|AU044865|AW214031|Moka|SP329 - 18|18 E1 F-box protein 38 protein-coding 100036540 Mm.218889 LOC100036540 - - - uncharacterized LOC100036540 unknown 104098 Xpl - - - X-linked polydactyly unknown 320874 Mm.417680 NM_177281 D930030D11Rik - - 16|16 B4 RIKEN cDNA D930030D11 gene unknown 100042060 Gm3644 - - 7 A1|7 predicted gene 3644 protein-coding 224754 Mm.246582 NM_177635 ENSMUSG00000037537 H2-M11 - - 17|17 B1 histocompatibility 2, M region locus 11 protein-coding 105244475 Gm40077 - - 3|3 predicted gene, 40077 ncRNA 107766 Mm.30100 NM_025325 ENSMUSG00000000673 Haao 0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO - 17|17 E4 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 109961 Rmp4 - - - resistance to mousepox 4 protein-coding 102637626 XR_382800 ENSMUSG00000114474 Gm34388 - - 13 D1|13 predicted gene, 34388 ncRNA 100416529 Gm18148 - - 14|14 E2.1-E2.2 predicted gene, 18148 pseudo 111005 Marcksl1-ps1 Mlp-rs1|Mrp-rs1 - 10 B5.1|10 34.66 cM MARCKS-like 1, pseudogene 1 pseudo 67920 Mm.289818 NM_026453 ENSMUSG00000031578 Mak16 2600016B03Rik|AI314911|Rbm13 - 8|8 A3 MAK16 homolog protein-coding 226153 Mm.105585 NM_153796 ENSMUSG00000025209 Twnk D19Ertd626e|PEO|Peo1|Twinl - 19 C3|19 38.19 cM twinkle mtDNA helicase protein-coding 100034975 Bwnd2wk2 - - - body weight, NMR1 x DBA, 2 week, QTL 2 unknown 14228 Mm.12758 NM_010219 ENSMUSG00000030357 Fkbp4 AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59 - 6|6 F3 FK506 binding protein 4 protein-coding 68220 Mm.443266 1700019A23Rik - - 7|7 RIKEN cDNA 1700019A23 gene protein-coding 544810 Mm.436888 NM_001033787 Gm11536 - - 11 D|11 predicted gene 11536 unknown 100418092 Gm13207 - - 4|4 E2 NSA2 ribosome biogenesis homolog pseudogene pseudo 102638610 XM_011251052 ENSMUSG00000103371 Gm35134 - - Y A1|Y predicted gene, 35134 protein-coding 104027 Mm.252321 NM_177340 ENSMUSG00000043079 Synpo 9030217H17Rik|9130229N11|9330140I15Rik|AW046661 - 18|18 D3 synaptopodin protein-coding 102632618 Gm30645 - - 7 A1|7 predicted gene, 30645 pseudo 102631801 XR_001784380 Gm30047 - - 4 C7|4 predicted gene, 30047 ncRNA 109202 Mm.30769 NM_175405 ENSMUSG00000056735 A930024E05Rik - - 5|5 F RIKEN cDNA A930024E05 gene ncRNA 98844 AB039971 - - - expressed sequence AB039971 protein-coding 100861637 XM_006542621 ENSMUSG00000095153 Gm21095 - - Y E|Y predicted gene, 21095 protein-coding 102466845 NR_106138 ENSMUSG00000099059 Mir7676-2 Gm27790|mmu-mir-7676-2 - 15|15 E1 microRNA 7676-2 ncRNA 230709 Mm.34399 NM_172700 ENSMUSG00000043207 Zmpste24 A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p - 4|4 D2.2 zinc metallopeptidase, STE24 protein-coding 56282 Mm.133851 NM_027204 ENSMUSG00000039640 Mrpl12 0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12 - 11|11 E2 mitochondrial ribosomal protein L12 protein-coding 105245508 XR_873431 Gm16578 - - 13 B1|13 28.41 cM predicted gene 16578 ncRNA 111492 Xmmv47 Xmmv-47|Xp-6 - - xenotropic-MCF leukemia virus 47 other 102640085 Gm12956 - - 4 D2.1|4 55.42 cM predicted gene 12956 pseudo 16396 Mm.208286 NM_008395 ENSMUSG00000027598 Itch 6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik - 2 H1|2 76.94 cM itchy, E3 ubiquitin protein ligase protein-coding 114730 Skull22 E15|L15|QTL-S15.1 - 15 58.06 cM skull morphology 22 unknown 109501 Dssc1 - - 5 71.08 cM dextran sodium sulfate induced colitis QTL1 unknown 627480 NM_001167603 Gm6762 EG627480 - 9|9 A4 small cell adhesion glycoprotein family member pseudo 19718 Mm.332739 NM_020022 ENSMUSG00000023104 Rfc2 2610008M13Rik|40kDa|AI326953|Recc2 - 5 G2|5 74.68 cM replication factor C (activator 1) 2 protein-coding 73650 Mm.396435 2410024F20Rik - - 6|6 RIKEN cDNA 2410024F20 gene protein-coding 100416094 Gm17913 - - 16|16 A1 cyclin Y-like 1 pseudogene pseudo 105242415 XR_868992 Gm38688 - - 6 B1|6 predicted gene, 38688 ncRNA 99813 AU022332 - - - expressed sequence AU022332 unknown 107401 Mm.429722 AW742912 - - - expressed sequence AW742912 unknown 14111 Fau-ps2 Faurs2 - 11|11 A1 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived), pseudogene 2 pseudo 381922 Mm.304201 NM_001362232 Cdiptos D830044I16Rik - 7|7 F3 CDIP transferase, opposite strand protein-coding 100217444 NR_028541 Snord65 MBII-135|snoRNA135 - 11 B2|11 small nucleolar RNA, C/D box 65 snoRNA 66190 Mm.334041 NM_025408 ENSMUSG00000030760 Acer3 1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC - 7|7 E1 alkaline ceramidase 3 protein-coding 102633112 Mm.404027 Gm31019 - - 18|18 predicted gene, 31019 ncRNA 100418366 Gm12361 - - 4|4 A5 ubiquitin protein ligase E3 component n-recognin 7 (putative) pseudogene pseudo 72091 Mm.27103 NR_024068 Snhg7 2610002F03Rik|AI427062 - 2 A3|2 small nucleolar RNA host gene 7 ncRNA 258649 Mm.271494 NM_146655 ENSMUSG00000094669 Olfr441 MOR261-3 - 6|6 B2.1 olfactory receptor 441 protein-coding 102465203 NR_105808 ENSMUSG00000098766 Mir6386 Gm27842|mmu-mir-6386 - 9|9 E3.3 microRNA 6386 ncRNA 108167443 XR_001778192 ENSMUSG00000109194 LOC108167443 - - 7 D3 uncharacterized LOC108167443 ncRNA 102467585 n-TPagg4 n-Tp4 - 14 C1|14 nuclear encoded tRNA proline 4 (anticodon AGG) tRNA 102465573 NR_105915 ENSMUSG00000098666 Mir6950 Gm27586|mmu-mir-6950 - 14|14 D2 microRNA 6950 ncRNA 100039568 Gm2316 - - Y A1|Y predicted gene 2316 pseudo 723816 NR_029659 ENSMUSG00000065572 Mir130b Mirn130b|mir-130b - 16|16 A3 microRNA 130b ncRNA 108436 Xmmv56 Xmmv-56|Xp-15 - - xenotropic-MCF leukemia virus 56 other 69478 Mm.113942 NM_027090 ENSMUSG00000032403 2300009A05Rik - - 9|9 C RIKEN cDNA 2300009A05 gene protein-coding 102642800 XR_873241 Gm38636 - - 13 A3.3|13 predicted gene, 38636 ncRNA 432956 Mm.404918 NR_040350 ENSMUSG00000116031 D030024E09Rik - - 15|15 D1 RIKEN cDNA D030024E09 gene ncRNA 109701 Spla1 Spl-1|Spl1 - - spleen antigen 1 protein-coding 109279885 LOC109279885 Mm17 - - VISTA enhancer mm17 biological-region 109889 Mm.10103 NM_145819 ENSMUSG00000030380 Mzf1 Mzf-2|Mzf2|Zfp121|Zfp98|Znf42 - 7 A1|7 7.73 cM myeloid zinc finger 1 protein-coding 320010 D730035F11Rik - - 9|9 RIKEN cDNA D730035F11 gene protein-coding 102633302 XR_382663 Gm31161 - - 13 C1|13 predicted gene, 31161 ncRNA 98077 C81431 - - - expressed sequence C81431 unknown 105243114 Gm39125 - - 8|8 predicted gene, 39125 ncRNA 102632931 LOC102632931 - - 16 C3.1 ATPase, H+ transporting, lysosomal V1 subunit F pseudogene pseudo 100502750 Mm.483712 Gm19351 - - 14|14 45.9 cM predicted gene, 19351 unknown 112224 Rapop3 - - 3 34.38 cM radiation-induced apoptosis 3 unknown 11658 Mm.288282 NM_009655 ENSMUSG00000022636 Alcam AI853494|BEN|CD166|DM-GRASP|MuSC|SC1 - 16|16 B5 activated leukocyte cell adhesion molecule protein-coding 105244671 XR_001784414 Gm40237 - - 4 D2.1|4 predicted gene, 40237 ncRNA 100042753 Obox4-ps27 Gm10679 - 7|7 A2 oocyte specific homeobox 4, pseudogene 27 pseudo 102635174 XR_375990 Gm32577 - - 3 G1|3 predicted gene, 32577 ncRNA 72512 Mm.45995 NM_028261 ENSMUSG00000024349 Tmem173 2610307O08Rik|ERIS|MPYS|Mita|STING - 18 B2|18 transmembrane protein 173 protein-coding 105246446 Gm41735 - - 18|18 predicted gene, 41735 ncRNA 109280056 LOC109280056 Mm458 - - VISTA enhancer mm458 biological-region 61805 D2Mit390 - - 2 57.3 cM DNA segment, Chr 2, Massachusetts Institute of Technology 390 unknown 624348 Gm6496 EG624348 - 17|17 E2 predicted gene 6496 pseudo 62935 D11Mit309 - - 11 28.76 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 309 unknown 664995 Gm7439 EG664995 - 9|9 B leucine zipper transcription factor-like 1 pseudogene pseudo 629578 Cbx3-ps6 EG629578|Gm6984 - 14 D3|14 chromobox 3, pseudogene 6 pseudo 85118 D1Mit225 - - 1 11.55 cM DNA segment, Chr 1, Massachusetts Institute of Technology 225 unknown 12667 Mm.20457 NM_009893 ENSMUSG00000006958 Chrd Chd - 16 B1|16 12.51 cM chordin protein-coding 102633198 XR_386095 Gm31086 - - 18 A1|18 predicted gene, 31086 ncRNA 103946 Br - - - brachyrrhine unknown 19250 Mm.4498 NM_008976 ENSMUSG00000026604 Ptpn14 C130080N23Rik|PTP36 - 1 H6|1 95.03 cM protein tyrosine phosphatase, non-receptor type 14 protein-coding 100042731 Obox4-ps19 Gm3996 - 7 A2|7 oocyte specific homeobox 4, pseudogene 19 pseudo 69606 Mm.287956 NM_027134 ENSMUSG00000059183 Mtfmt 2310020P08Rik - 9|9 C mitochondrial methionyl-tRNA formyltransferase protein-coding 214105 Mm.66708 NM_173384 ENSMUSG00000040489 Sox30 - - 11 B1.1|11 27.49 cM SRY (sex determining region Y)-box 30 protein-coding 225913 Mm.374868 NM_145496 ENSMUSG00000034371 Tkfc BC021917|Dak - 19|19 A triokinase, FMN cyclase protein-coding 18142 Mm.145821 NM_008718 ENSMUSG00000001988 Npas1 MOP5|bHLHe11 - 7 A2|7 9.14 cM neuronal PAS domain protein 1 protein-coding 100502757 Gm17259 - - 13|13 43.68 cM predicted gene, 17259 ncRNA 78742 9530086P17Rik - - 14|14 RIKEN cDNA 9530086P17 gene protein-coding 59021 Mm.397471 NM_021518 ENSMUSG00000047187 Rab2a 9330148M11Rik|C80220|Rab2 - 4|4 A1 RAB2A, member RAS oncogene family protein-coding 102634510 Gm32075 - - 17|17 predicted gene, 32075 ncRNA 433184 Gm5507 EG433184 - 18|18 D1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100043909 Gm4721 - - 2|2 H3 predicted gene 4721 pseudo 85080 D9Mit76 - - 9 50.18 cM DNA segment, Chr 9, Massachusetts Institute of Technology 76 unknown 12337 Mm.326847 NM_007602 ENSMUSG00000035547 Capn5 nCL-3 - 7|7 E1 calpain 5 protein-coding 22228 Mm.171378 NM_011671 ENSMUSG00000033685 Ucp2 Slc25a8|UCP 2|UCPH - 7 E2|7 54.36 cM uncoupling protein 2 (mitochondrial, proton carrier) protein-coding 791305 Mm.134338 B430202K04Rik - - - RIKEN cDNA B430202K04 gene protein-coding 105247102 XR_881148 Gm42260 - - 4 A3|4 predicted gene, 42260 ncRNA 666921 Mm.477980 NM_001144948 ENSMUSG00000078576 Gm12886 - - 4|4 D2.2 predicted gene 12886 protein-coding 70491 Mm.396636 NR_045424 ENSMUSG00000087553 5730412P04Rik - - X|X F1 RIKEN cDNA 5730412P04 gene ncRNA 333588 Mm.159296 NM_001101501 Gm15104 - - X|X F3 predicted gene 15104 protein-coding 16646 Mm.3991 NM_008465 ENSMUSG00000022905 Kpna1 AW494490|IPOA5|NPI1|Rch2|mSRP1 - 16|16 B3 karyopherin (importin) alpha 1 protein-coding 13713 Mm.4454 NM_013508 ENSMUSG00000008398 Elk3 D430049E23Rik|Erp|Etrp|Net|Sap-2 - 10 C2|10 48.04 cM ELK3, member of ETS oncogene family protein-coding 319352 Mm.295327 NM_175696 ENSMUSG00000030329 Pianp AI255183|AU067746|C530028O21Rik|Panp - 6|6 F2 PILR alpha associated neural protein protein-coding 97809 C79533 - - - expressed sequence C79533 unknown 58522 Mm.143796 NM_021447 ENSMUSG00000062077 Trim54 4930486E09Rik|4930566I02Rik|MURF|MURF-3|MuRF3|Rnf30 - 5|5 B1 tripartite motif-containing 54 protein-coding 105245320 XR_872153 Gm40795 - - 10 D3|10 predicted gene, 40795 ncRNA 14360 Mm.4848 NM_008054 ENSMUSG00000019843 Fyn AI448320|AW552119 - 10 B1|10 20.51 cM Fyn proto-oncogene protein-coding 320209 Mm.259605 NM_001003919 ENSMUSG00000035842 Ddx11 4732462I11Rik|CHL1|CHLR1|KRG2|essa15a - 17|17 E1.1 DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 protein-coding 102466841 NR_106120 ENSMUSG00000099163 Mir7660 Gm27712|mmu-mir-7660 - 6|6 E3 microRNA 7660 ncRNA 100503751 XR_106147 ENSMUSG00000098295 Gm19872 - - 8 C3|8 42.16 cM predicted gene, 19872 ncRNA 320898 Mm.213248 NM_177288 Trav3-3 A430107P09Rik|Gm13917 - 14|14 C2 T cell receptor alpha variable 3-3 other 330171 Mm.238285 NM_026145 ENSMUSG00000001098 Kctd10 AW536343|C87062|mBACURD3 - 5|5 F potassium channel tetramerisation domain containing 10 protein-coding 61230 D1Mit245 - - 1 15.59 cM DNA segment, Chr 1, Massachusetts Institute of Technology 245 unknown 52024 Mm.183030 NM_024204 ENSMUSG00000024774 Ankrd22 5430429D21Rik|D19Ertd675e - 19 C1|19 29.33 cM ankyrin repeat domain 22 protein-coding 140721 Mm.383737 NM_080643 ENSMUSG00000034471 Caskin2 1600028L06Rik|mKIAA1139 - 11|11 E2 CASK-interacting protein 2 protein-coding 61663 D7Mit242 - - 7 82.95 cM DNA segment, Chr 7, Massachusetts Institute of Technology 242 unknown 627798 Tpt1-ps5 EG627798|Gm6790 - 9|9 A4 tumor protein, translationally-controlled, pseudogene 5 pseudo 100035709 Bw29 Bw23 - - body weight QTL 29 unknown 93675 Mm.391513 NM_020257 ENSMUSG00000030365 Clec2i Clr-g|Clrg|Dcl1|LCL-1|OCILrP2 - 6|6 F3 C-type lectin domain family 2, member i protein-coding 105242713 XR_869246 Gm38856 - - 6 D1|6 predicted gene, 38856 ncRNA 269060 Mm.329718 NM_198114 ENSMUSG00000035735 Dagla Nsddr - 19|19 A diacylglycerol lipase, alpha protein-coding 13865 Mm.439653 NM_010151 ENSMUSG00000069171 Nr2f1 COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1 - 13 C1|13 41.38 cM nuclear receptor subfamily 2, group F, member 1 protein-coding 75475 Mm.322738 NM_153122 ENSMUSG00000022562 Oplah 1700010G02Rik - 15|15 D3 5-oxoprolinase (ATP-hydrolysing) protein-coding 20707 Mm.219429 NM_011453 ENSMUSG00000021404 Serpinb9c 3830421J05Rik|Nk9|Spi11 - 13 A3.3|13 13.82 cM serine (or cysteine) peptidase inhibitor, clade B, member 9c protein-coding 52318 Mm.395024 D1Ertd448e AI427118 - 1 13.23 cM DNA segment, Chr 1, ERATO Doi 448, expressed unknown 18368 Mm.377108 NM_013619 ENSMUSG00000047535 Olfr67 3'[b]1|3'beta1|MOR31-1 - 7|7 E3 olfactory receptor 67 protein-coding 85218 D18Mit180 - - 18 24.15 cM DNA segment, Chr 18, Massachusetts Institute of Technology 180 unknown 109551 In(15)4H Koa - - inversion, Chr 15, Harwell 4 other 108168143 XR_001781205 Gm46445 - - 14 A3|14 predicted gene, 46445 ncRNA 100418117 Gm19010 - - 13|13 D1 NSA2 ribosome biogenesis homolog pseudogene pseudo 61320 D3Mit169 - - 3 18.46 cM DNA segment, Chr 3, Massachusetts Institute of Technology 169 unknown 73940 Mm.294467 NM_022031 ENSMUSG00000004894 Hapln2 4930401E20Rik|Bral1 - 3 F1|3 38.78 cM hyaluronan and proteoglycan link protein 2 protein-coding 66420 Mm.18579 NM_025554 ENSMUSG00000004667 Polr2e 2410021N14Rik|25kDa|AW208866|RPB5|XAP4 - 10|10 C1 polymerase (RNA) II (DNA directed) polypeptide E protein-coding 105243679 XR_882301 Gm39510 - - X A4|X predicted gene, 39510 ncRNA 71215 Mm.488100 4933436F18Rik - - 12|12 RIKEN cDNA 4933436F18 gene protein-coding 102638116 XR_874536 LOC102638116 - - 14 B uncharacterized LOC102638116 ncRNA 622251 Mm.189341 A26c2 EG622251|Lmf2|Tssk1b - 7|7 C ANKRD26-like family C, member 2 unknown 225134 Gm4833 EG225134 - 18|18 A1 ribosomal protein S4, X-linked pseudogene pseudo 112086 Oriq5 - - - ovulation rate QTL 5 unknown 108168752 XR_001783295 Gm46738 - - 2 C1.1|2 predicted gene, 46738 ncRNA 56380 Mm.425588 NM_019689 ENSMUSG00000004661 Arid3b Bdp|Dri2 - 9|9 B AT rich interactive domain 3B (BRIGHT-like) protein-coding 105246094 Gm41438 - - 16|16 predicted gene, 41438 ncRNA 108167747 XR_001779548 Gm46173 - - 1 H4|1 predicted gene, 46173 ncRNA 14231 Mm.24720 NM_010222 ENSMUSG00000002732 Fkbp7 23kDa|FKBP-7|FKBP23 - 2 C3|2 45.09 cM FK506 binding protein 7 protein-coding 18806 Mm.260177 NM_008876 ENSMUSG00000020828 Pld2 PLD1C - 11 B3|11 42.99 cM phospholipase D2 protein-coding 102634559 Mm.421602 NR_136928 ENSMUSG00000100583 Gm29443 - - 7 A2|7 predicted gene 29443 ncRNA 76643 Mm.439149 NR_045453 ENSMUSG00000100364 1700121L16Rik - - X|X D RIKEN cDNA 1700121L16 gene ncRNA 100417947 Gm18914 - - 9|9 E3.3 DnaJ (Hsp40) homolog, subfamily C, member 8 pseudogene pseudo 101458 Mm.441567 AA536887 - - - expressed sequence AA536887 unknown 626596 Mm.321798 NM_001195748 ENSMUSG00000037627 Rgs22 - - 15|15 B3.1 regulator of G-protein signalling 22 protein-coding 63010 D19Mit129 - - 19 12.67 cM DNA Segment, Chr 19, Massachusetts Institute of Technology 129 unknown 18021 Mm.383185 NM_010901 ENSMUSG00000031902 Nfatc3 C80703|D8Ertd281e|NFAT4|NFATx - 8 D3|8 53.08 cM nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 protein-coding 78444 Mm.425468 NM_030101 ENSMUSG00000030553 Pgpep1l C330024D12Rik - 7|7 C pyroglutamyl-peptidase I-like protein-coding 111682 Iapt5 - - - intracisternal A particle, tumor specific 5 other 100040177 Gm13642 - - 2|2 C2 nuclear protein-NHP2-like protein pseudogene pseudo 117562 Lch Gena241 - - low cholesterol unknown 258494 Mm.377535 NM_146501 ENSMUSG00000108265 Olfr318 MOR285-1 - 11|11 B1.3 olfactory receptor 318 protein-coding 667806 Gm8825 EG667806 - 19 C1|19 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 332993 Mm.473746 NR_028426 Gm5129 EG332993 - 5|5 B1 predicted gene 5129 ncRNA 100124475 NR_030568 ENSMUSG00000077981 Mir466f-3 Mirn466f-3 - 2 A1|2 microRNA 466f-3 ncRNA 60898 D8Mit50 - - 8 43.51 cM DNA segment, Chr 8, Massachusetts Institute of Technology 50 unknown 436010 Gm5738 EG436010 - 7|7 F3 Yip1 domain family, member 5 pseudogene pseudo 100034907 Elsgp3 - - 2 49.68 cM elevated serum gp70 3 unknown 101267 AU041156 - - - expressed sequence AU041156 unknown 13639 Mm.16332 NM_007910 ENSMUSG00000028040 Efna4 EFL-4|Epl4|LERK-4 - 3 F1|3 39.07 cM ephrin A4 protein-coding 100416662 Gm18175 - - X|X C1 zinc finger protein 459 pseudogene pseudo 61029 D7Mit190 - - 7 9.15 cM DNA segment, Chr 7, Massachusetts Institute of Technology 190 unknown 112215 Daq11 - - - directional asymmetry QTL 11 unknown 100526500 NR_037273 ENSMUSG00000093338 Mir3090 mmu-mir-3090 - 2 F2|2 65.21 cM microRNA 3090 ncRNA 492964 Hdl5 - - 3 30.51 cM HDL level 5 unknown 100038466 Gm10854 - - - predicted gene 10854 protein-coding 101190 Mm.441839 AI853106 - - - expressed sequence AI853106 protein-coding 102639759 XR_377226 Gm35994 - - 5 G3|5 predicted gene, 35994 ncRNA 18207 Mm.148315 NM_008743 ENSMUSG00000041429 Nthl1 Nth1|Octs3 - 17|17 A3.3 nth (endonuclease III)-like 1 (E.coli) protein-coding 632013 Gm7079 EG632013 - X|X A1.1 ribosomal protein S29 pseudogene pseudo 102637368 XR_387997 Gm34197 - - 8 D3|8 predicted gene, 34197 ncRNA 433416 Mm.330112 NM_001034887 ENSMUSG00000075425 Gm13547 - - 2 B|2 predicted gene 13547 protein-coding 105246528 XR_877702 Gm41803 - - 19 A|19 predicted gene, 41803 ncRNA 71196 Mm.73218 NR_040716 ENSMUSG00000111843 4933432G23Rik - - 9|9 F3 RIKEN cDNA 4933432G23 gene ncRNA 16682 Mm.46425 NM_008475 ENSMUSG00000059668 Krt4 AW108092|K4|Krt-2.4|Krt2-4 - 15 F2|15 57.13 cM keratin 4 protein-coding 142681 Mm.346652 NM_080854 ENSMUSG00000006469 Slc34a3 AI649385|Npt2c|Npt2c-v1|NptIIc|naPi-2c - 2|2 A3 solute carrier family 34 (sodium phosphate), member 3 protein-coding 791389 Mm.484657 Gm9867 - - 4 D3|4 predicted gene 9867 unknown 16956 Mm.1514 NM_008509 ENSMUSG00000015568 Lpl - - 8 B3.3|8 33.88 cM lipoprotein lipase protein-coding 114537 Bbaa3 Bb3 - 5 47.29 cM B.burgdorferi-associated arthritis 3 unknown 52626 Mm.289456 NM_029976 ENSMUSG00000020392 Cdkn2aipnl A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520 - 11 B1.3|11 31.78 cM CDKN2A interacting protein N-terminal like protein-coding 100040533 Mm.337329 NM_001168337 ENSMUSG00000094727 Btbd35f5 GMCL1P1|Gclh|Gm2825|Gmcl1l|Gmcl2 - X A3.1|X BTB domain containing 35, family member 5 protein-coding 100502869 Mm.484205 Gm19422 - - 14|14 50.9 cM predicted gene, 19422 unknown 13328 Del(8A4-B3)7H Del(8)7H|Del(8Efha2-Myo9b)7H|Del7H - - deletion, Chr8, Harwell 7 other 225115 Mm.136791 NM_153153 ENSMUSG00000024236 Svil AU024053|B430302E16Rik - 18|18 A1 supervillin protein-coding 105988 Mm.288324 NM_001014976 ENSMUSG00000058290 Espl1 AL024103|AU045071|Cerp|ESP1|PRCE|SSE - 15|15 F3 extra spindle pole bodies 1, separase protein-coding 242700 Mm.259623 NM_174851 ENSMUSG00000062157 Ifnlr1 CRF2-12|Il28ra - 4|4 D3 interferon lambda receptor 1 protein-coding 114688 Skull1 L1.1|QTL-S1.1 - 1 38.55 cM skull morphology 1 unknown 381101 Mm.35801 NM_207161 ENSMUSG00000040658 Dnph1 C76683|Rcl - 17|17 C 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 protein-coding 100418458 Gm19224 - - 19|19 A UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 pseudogene pseudo 21389 Mm.727 NM_011538 ENSMUSG00000030699 Tbx6 rv - 7 F3|7 69.25 cM T-box 6 protein-coding 52076 Mm.27184 NM_028053 ENSMUSG00000028420 Tmem38b 1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b - 4 B2|4 28.76 cM transmembrane protein 38B protein-coding 100039478 Gm11810 - - 4|4 A1 predicted gene 11810 pseudo 100039551 Mm.272850 NM_001142750 ENSMUSG00000100194 Tgif2lx2 - - X|X E1 TGFB-induced factor homeobox 2-like, X-linked 2 protein-coding 102631557 XR_381313 Gm29864 - - 12 A1.2|12 predicted gene, 29864 ncRNA 258280 Mm.377411 NM_146283 ENSMUSG00000048996 Olfr1366 MOR130-2 - 13|13 A3.1 olfactory receptor 1366 protein-coding 102639393 XR_375341 Gm35719 - - 2 H3|2 predicted gene, 35719 ncRNA 382510 Gm12161 Gm1911 - 11|11 B1.1 tRNA-yW synthesizing tRNA-yW synthesizing pseudogene pseudo 108168399 XR_001782547 Gm46639 - - 18 E1|18 predicted gene, 46639 ncRNA 61827 D2Mit333 - - 2 54.85 cM DNA segment, Chr 2, Massachusetts Institute of Technology 333 unknown 105242399 NM_001310450 ENSMUSG00000096878 LOC105242399 - - 5 A2 spermatogenesis associated glutamate (E)-rich protein-like protein-coding 258804 Mm.223231 NM_146808 ENSMUSG00000111174 Olfr1240 MOR231-8 - 2|2 E1 olfactory receptor 1240 protein-coding 641361 Mm.333661 NM_001037143 ENSMUSG00000011632 Pinlyp 2310033E01Rik - 7|7 A3 phospholipase A2 inhibitor and LY6/PLAUR domain containing protein-coding 102632558 XR_873247 Gm30600 - - 13 A3.3|13 predicted gene, 30600 ncRNA 100628608 NR_039548 ENSMUSG00000106199 Mir3967 mmu-mir-3967|mu-mir-3967 - 2 A3|2 15.15 cM microRNA 3967 ncRNA 77168 8030450C14Rik - - 10|10 RIKEN cDNA 8030450C14 gene protein-coding 62575 D12Mit154 - - 12 18.06 cM DNA segment, Chr 12, Massachusetts Institute of Technology 154 unknown 383571 Gm5263 EG383571 - 1|1 F acidic (leucine-rich) nuclear phosphoprotein 32 family, member B pseudogene pseudo 492933 Tshp7 QTL-TSH7.1 - - tooth shape 7 unknown 102638828 Gm35301 - - 4|4 predicted gene, 35301 pseudo 259165 Mm.377868 NM_207159 ENSMUSG00000059134 Olfr814 MOR113-5|MOR113-8 - 10|10 D3 olfactory receptor 814 protein-coding 108167829 XR_001779843 Gm46239 - - 10 C2|10 predicted gene, 46239 ncRNA 66827 Mm.271974 NM_133795 ENSMUSG00000041278 Ttc1 4833412C19Rik|C79328|TPR1 - 11|11 B1.1 tetratricopeptide repeat domain 1 protein-coding 102637893 Mm.421269 XR_383704 ENSMUSG00000115816 Gm34589 - - 14 E2.3|14 predicted gene, 34589 ncRNA 21263 T(7;16)67H T67H - - reciprocal translocation, Chr 7 and 16, Harwell 67 other 61461 D6Mit196 - - 6 64.58 cM DNA segment, Chr 6, Massachusetts Institute of Technology 196 unknown 102640789 XR_381036 Gm36772 - - 11 A1|11 predicted gene, 36772 ncRNA 258192 Olfr1468-ps1 MOR202-21 - 19|19 A olfactory receptor 1468, pseudogene 1 pseudo 69440 Mm.482128 NM_027081 ENSMUSG00000015377 Dennd6b 1700027J05Rik|AI414881|Fam116b - 15|15 E3 DENN/MADD domain containing 6B protein-coding 231769 Mm.288714 NM_172276 ENSMUSG00000029439 Sfswap 1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8 - 5|5 G1.3 splicing factor SWAP protein-coding 14976 Mm.2948 NM_010385 ENSMUSG00000024309 Pfdn6 H-2Ke2|H2-Ke2|Ke-2 - 17 B1|17 17.98 cM prefoldin subunit 6 protein-coding 108167655 XR_001779181 Gm46115 - - 9 B|9 predicted gene, 46115 ncRNA 102634356 XR_379713 Gm31957 - - 9 E3.3|9 predicted gene, 31957 ncRNA 100503004 Gm19498 - - 9|9 47.24 cM transcription elongation factor B polypeptide 1-like pseudo 102634786 XR_375273 Gm32287 - - 2 H3|2 predicted gene, 32287 ncRNA 432537 Gm12009 - - 11|11 A2 eukaryotic translation elongation factor pseudogene pseudo 17294 Mm.335639 NM_008590 ENSMUSG00000051855 Mest AA408879|AI256745|Peg1 - 6 A3.3|6 12.53 cM mesoderm specific transcript protein-coding 100039453 Gm2245 - - 15 A1|15 predicted gene 2245 protein-coding 328837 Mm.236143 NR_046166 C330011F03Rik C330011F03 - 17|17 C RIKEN cDNA C330011F03 gene ncRNA 70730 Mm.401360 NM_027529 ENSMUSG00000009551 6330409D20Rik AA517851 - 2|2 B RIKEN cDNA 6330409D20 gene protein-coding 625436 Gm6584 - - 6|6 F3 predicted gene 6584 pseudo 102636054 XR_381103 Gm33232 - - 11 A3.2|11 predicted gene, 33232 ncRNA 75150 4930546E12Rik - - 2|2 RIKEN cDNA 4930546E12 gene protein-coding 100034862 Rrodp2 - - 2 62.89 cM rotarod performance 2 unknown 102635080 XR_373549 Gm32506 - - 1 C4|1 predicted gene, 32506 ncRNA 258925 Mm.246526 NM_146923 ENSMUSG00000062128 Olfr20 MOR135-11|MTPCR06|MTPCR55|Olfr21 - 11|11 B4 olfactory receptor 20 protein-coding 61653 D7Mit287 - - 7 78.67 cM DNA segment, Chr 7, Massachusetts Institute of Technology 287 unknown 61933 D5Mit369 - - 5 63.38 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 369 unknown 791283 Mm.256759 Gm9978 - - - predicted gene 9978 unknown 102142 Mm.441232 AI662245 - - - expressed sequence AI662245 unknown 68789 Mm.75202 NR_015549 ENSMUSG00000085492 Trmt61b 1110039F03Rik|623451|Gm6431 - 17|17 E1.3 tRNA methyltransferase 61B ncRNA 102633429 XR_385077 Gm31259 - - 16 C4|16 predicted gene, 31259 ncRNA 100498 AA408213 - - - expressed sequence AA408213 protein-coding 387202 NR_029593 ENSMUSG00000065559 Mir206 Mirn206|mmu-mir-206 - 1|1 A4 microRNA 206 ncRNA 72785 Mm.33206 2810474C18Rik - - 11|11 D RIKEN cDNA 2810474C18 gene unknown 56861 Mm.377128 NM_020291 ENSMUSG00000063120 Olfr480 MOR204-32|Ors25|S25 - 7|7 E3 olfactory receptor 480 protein-coding 13211 Mm.20000 NM_007842 ENSMUSG00000042699 Dhx9 AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5 - 1 G3|1 65.37 cM DEAH (Asp-Glu-Ala-His) box polypeptide 9 protein-coding 15519 Mm.1843 NM_010480 ENSMUSG00000021270 Hsp90aa1 86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4 - 12 F1|12 60.75 cM heat shock protein 90, alpha (cytosolic), class A member 1 protein-coding 218518 Mm.25300 NM_178410 ENSMUSG00000021636 Marveld2 BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc - 13|13 D1 MARVEL (membrane-associating) domain containing 2 protein-coding 100416335 Phf20-ps Gm18048 - 7|7 A1 PHD finger protein 20, pseudogene pseudo 102638898 XR_381279 Gm35350 - - 12 A1.1|12 predicted gene, 35350 ncRNA 212989 Mm.215154 NM_001130194 ENSMUSG00000052819 Best2 Vmd2l1 - 8|8 C3 bestrophin 2 protein-coding 74198 Mm.275574 NM_023742 ENSMUSG00000004947 Dtx2 2610524D08Rik|AA408415|AU022494|Deltex2 - 5|5 G2 deltex 2, E3 ubiquitin ligase protein-coding 71243 4933438A12Rik - - 15|15 RIKEN cDNA 4933438A12 gene unknown 74988 Mm.445292 NR_040768 4930480G23Rik - - 4|4 A3 RIKEN cDNA 4930480G23 gene ncRNA 71586 Mm.136224 NM_027835 ENSMUSG00000026896 Ifih1 9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2 - 2|2 C1.3 interferon induced with helicase C domain 1 protein-coding 107242 Mm.329658 NM_134149 ENSMUSG00000047423 AI837181 Bles03|N28173 - 19|19 A expressed sequence AI837181 protein-coding 105244720 XR_868338 Gm40278 - - 5 B1|5 predicted gene, 40278 ncRNA 404401 Olfr529-ps1 GA_x5J8B7W72BC-125691-125311|GA_x6K02T2PBJ9-42518755-42519135 - 7|7 F4 olfactory receptor 529, pseudogene 1 pseudo 102634168 XR_385907 Gm38460 - - 17 E4|17 predicted gene, 38460 ncRNA 231997 Mm.274693 NM_153573 ENSMUSG00000038074 Fkbp14 BC029109|FKBP-14|FKBP22 - 6|6 B3 FK506 binding protein 14 protein-coding 230822 Mm.35548 NM_145555 ENSMUSG00000043924 Ncmap A330049M08Rik|AA545175|Mp11 - 4|4 D3 noncompact myelin associated protein protein-coding 71862 Mm.272019 NM_027965 ENSMUSG00000037661 Gpr160 1700025D19Rik|GPCR150 - 3|3 A3 G protein-coupled receptor 160 protein-coding 668369 Gm9133 EG668369 - X|X D predicted pseudogene 9133 protein-coding 60749 D1Mit94 - - 1 54.7 cM DNA segment, Chr 1, Massachusetts Institute of Technology 94 unknown 100043804 Gm4660 - - 16|16 C1.3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1 pseudogene pseudo 100038571 Mm.426714 NR_137285 ENSMUSG00000073765 Gm12863 - - 4 D2.1|4 predicted gene 12863 ncRNA 100415963 Gm12856 - - 4|4 D2.1 cyclin B1 pseudogene pseudo 230085 Mm.240965 NM_172690 ENSMUSG00000036062 Phf24 GINIP|N28178 - 4|4 A5 PHD finger protein 24 protein-coding 78401 2900042G08Rik - - 13|13 RIKEN cDNA 2900042G08 gene protein-coding 227631 Mm.301632 NM_001001714 ENSMUSG00000059625 Sohlh1 Gm110|Nohlh - 2|2 A3 spermatogenesis and oogenesis specific basic helix-loop-helix 1 protein-coding 319695 Mm.249056 NM_176980 ENSMUSG00000039342 Ankar 4932422E22Rik - 1|1 C3 ankyrin and armadillo repeat containing protein-coding 100041632 Gm3442 - - 10|10 B2 predicted gene 3442 pseudo 105246849 Gm42068 - - 19 A|19 synaptojanin-2-binding protein pseudogene pseudo 61788 D3Mit233 - - 3 42.32 cM DNA segment, Chr 3, Massachusetts Institute of Technology 233 unknown 101185 Mm.274589 NM_133931 ENSMUSG00000029676 Pot1a 1500031H18Rik|AI851169|Pot1 - 6|6 A3.1 protection of telomeres 1A protein-coding 107983946 LOC107983946 - - - Wt1 promoter region biological-region 27358 Mm.103651 NM_013756 ENSMUSG00000039775 Defb3 BD-3 - 8|8 A1.3 defensin beta 3 protein-coding 111240 Hmga1-ps Hmga1-rs2|Hmgi-rs2 - - high mobility group AT-hook 1, pseudogene pseudo 100039895 XR_387710 Gm2479 - - 5 F|5 predicted gene 2479 ncRNA 52011 D19Ertd132e - - 19 38.75 cM DNA segment, Chr 19, ERATO Doi 132, expressed unknown 100041426 XR_379226 Gm3331 - - 9 A4|9 predicted gene 3331 protein-coding 108168369 XR_001782423 Gm46614 - - 18 E3|18 predicted gene, 46614 ncRNA 21580 Mm.333026 Tcrb-J 5830405F06Rik - - T cell receptor beta, joining region other 665130 Gm7508 EG665130 - 15|15 B3.3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102634570 Gm28790 - - Y|Y predicted gene 28790 protein-coding 51976 D1Ggc1e - - - DNA segment, Chr 1, G. Consalez 1, expressed unknown 114145 Szs7 - - - seizure susceptibility 7 unknown 108168253 XR_001781730 Gm46528 - - 15 E2|15 predicted gene, 46528 ncRNA 100504180 XM_003084879 ENSMUSG00000058537 LOC100504180 - - 10 B4 double homeobox protein 4-like protein-coding 105243282 Mm.203332 NR_151498 4922502B01Rik 2900056M07Rik - 8|8 D3 RIKEN cDNA 4922502B01 gene ncRNA 114738 Iba2 - - 3 43.03 cM induction of brown adipocytes 2 unknown 74919 Mm.247985 NM_175675 ENSMUSG00000029175 Slc35f6 4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9 - 5|5 B1 solute carrier family 35, member F6 protein-coding 102633155 XR_374774 Gm31054 - - 2 E1|2 predicted gene, 31054 ncRNA 18728 Mm.482470 Pira5 7M4 - - paired-Ig-like receptor A5 protein-coding 110120436 LOC110120436 - - - VISTA enhancer mm1461 biological-region 259024 Mm.390415 NM_147022 ENSMUSG00000072708 Olfr381 MOR135-4 - 11|11 B4 olfactory receptor 381 protein-coding 109972 Hfh6 - - - HNF-3/forkhead homolog 6 protein-coding 72106 Mm.277599 NM_028101 ENSMUSG00000025736 Jmjd8 2610003J06Rik - 17|17 A3.3 jumonji domain containing 8 protein-coding 52643 D18Ertd511e - - 18 19.23 cM DNA segment, Chr 18, ERATO Doi 511, expressed unknown 20537 Mm.25237 NM_019810 ENSMUSG00000011034 Slc5a1 Sglt1 - 5|5 B1 solute carrier family 5 (sodium/glucose cotransporter), member 1 protein-coding 492976 Hrtq1 - - - heart weight QTL 1 unknown 22272 Mm.251621 NM_025352 ENSMUSG00000044894 Uqcrq 1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502 - 11|11 B1.3 ubiquinol-cytochrome c reductase, complex III subunit VII protein-coding 100526463 NR_037212 ENSMUSG00000092867 Mir3058 mir-3058|mmu-mir-3058 - 10 C2|10 49.43 cM microRNA 3058 ncRNA 105242589 XR_861543 Gm38759 - - 11 C|11 predicted gene, 38759 ncRNA 56309 Mm.446553 NM_019660 ENSMUSG00000028647 Mycbp 5730488M09Rik|AW552132|AW742590|Amy-1 - 4|4 D2.2 MYC binding protein protein-coding 81016 Mm.160381 NM_030741 ENSMUSG00000092579 Vmn1r62 V1rd2|V1rd8|V3R2 - 7|7 A1 vomeronasal 1 receptor 62 protein-coding 258826 Mm.246532 NM_146829 ENSMUSG00000049708 Olfr27 MOR171-6|MTPCR56 - 9|9 A5.1 olfactory receptor 27 protein-coding 100036489 Manln7 - - 7 1.91 cM mandible length 7 unknown 102637131 XR_376676 Gm12976 - - 4 D2.2|4 63.2 cM predicted gene 12976 ncRNA 69168 Mm.104531 NM_026975 ENSMUSG00000015943 Bola1 1810037G04Rik - 3|3 F2.1 bolA-like 1 (E. coli) protein-coding 329696 Mm.331133 A630076J08 - - 3|3 F1 uncharacterized protein A630076J08 protein-coding 100502842 Mm.164733 NR_038463 ENSMUSG00000085808 Gm14718 - - X A6|X 31.18 cM predicted gene 14718 ncRNA 319901 Mm.103468 NM_001081316 ENSMUSG00000038702 Dsel 9330132E09Rik|DS-epi2 - 1|1 E2.1 dermatan sulfate epimerase-like protein-coding 102633987 Gm31680 - - Y|Y tRNA methyltransferase 112 homolog pseudo 624295 LOC624295 - - 6|6 B2.3 uncharacterized LOC624295 protein-coding 21336 Mm.8055 NM_009313 ENSMUSG00000030043 Tacr1 Nk1r|Spr|Tac1r - 6|6 C3 tachykinin receptor 1 protein-coding 76402 Mm.436588 NR_040742 ENSMUSG00000100146 1700020M21Rik - - 9 F4|9 RIKEN cDNA 1700020M21 gene ncRNA 102633673 Mm.396603 NR_131915 ENSMUSG00000086468 Etaa1os 2900053O20Rik|4930542E09Rik - 11|11 A3.1 Ewing tumor-associated antigen 1, opposite strand ncRNA 66273 Mm.41583 NM_183251 ENSMUSG00000035642 Aamdc 1810020D17Rik|1810037D19Rik|LI2 - 7|7 E1 adipogenesis associated Mth938 domain containing protein-coding 28190 D6Wum2 95R - 6 63.41 cM DNA segment, Chr 6, Washington University School of Medicine 2 unknown 217738 Mm.219363 NM_001290302 ENSMUSG00000050671 Ism2 Gm264|Thsd3 - 12|12 D2 isthmin 2 protein-coding 100502693 Gm19324 - - 9 A1|9 2.46 cM angiopoietin-related protein 5 pseudogene pseudo 100861496 NR_046149 ENSMUSG00000094657 n-R5s142 Rn5s25 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 142 rRNA 12768 Mm.274927 NM_009912 ENSMUSG00000025804 Ccr1 Cmkbr1|Mip-1a-R - 9 F4|9 75.05 cM chemokine (C-C motif) receptor 1 protein-coding 74939 Mm.342710 NR_153835 ENSMUSG00000114509 4930471G24Rik - - 13|13 A5 RIKEN cDNA 4930471G24 gene ncRNA 100041688 Mm.459166 NM_001177481 ENSMUSG00000061845 Defa35 Gm10104 - 8 A2|8 defensin, alpha, 35 protein-coding 108476 Ms82 MMS82 - - minisatellites detected by probe MMS82 other 102640140 Mm.437965 LOC102640140 - - - uncharacterized LOC102640140 ncRNA 102638447 XR_381133 Gm35012 - - 11 A4|11 predicted gene, 35012 ncRNA 76705 Mm.399727 NM_029707 Ppp1r2-ps7 1700023I07Rik - X|X A2 protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 7 pseudo 665401 Gm7622 EG665401 - 13 B2|13 predicted pseudogene 7622 pseudo 110120378 LOC110120378 - - - VISTA enhancer mm492 biological-region 19708 Mm.2651 NM_011262 ENSMUSG00000024826 Dpf2 2210010M07Rik|BAF45D|Req|ubi-d4 - 19 A|19 4.34 cM D4, zinc and double PHD fingers family 2 protein-coding 102632266 XR_874624 Gm30392 - - 14 C2|14 predicted gene, 30392 ncRNA 102632473 XR_375378 Gm30537 - - 2 H4|2 predicted gene, 30537 ncRNA 18698 pid - - - preimplantation development unknown 102639958 XR_001784889 LOC102639958 - - 5 E1 uncharacterized LOC102639958 ncRNA 258718 Mm.223152 NM_146723 ENSMUSG00000051200 Olfr513 MOR195-1 - 7|7 E3 olfactory receptor 513 protein-coding 100503653 Gm14036 - - 2|2 65.66 cM predicted gene 14036 ncRNA 667381 Gm8602 - - 6 A1|6 KH-type splicing regulatory protein pseudogene pseudo 670211 Gm12508 - - 4|4 B3 predicted gene 12508 pseudo 75887 Mm.416957 NR_131052 ENSMUSG00000087097 4930586N03Rik - - 13|13 A3.1 RIKEN cDNA 4930586N03 gene ncRNA 102640748 XR_379189 Gm36743 - - 9 A3|9 predicted gene, 36743 ncRNA 110916 Lamr1-rs4 67kDa|P40-rs4 - - laminin receptor 1 (ribosomal protein SA), related sequence 4 protein-coding 58809 Mm.202665 NM_021472 ENSMUSG00000021876 Rnase4 C730049F20Rik|Rab1 - 14|14 C1 ribonuclease, RNase A family 4 protein-coding 18094 Mm.129420 NM_008701 ENSMUSG00000058669 Nkx2-9 Nkx-2.9|Nkx2-8|Nkx2.9|tinman - 12|12 C1 NK2 homeobox 9 protein-coding 100125279 Vmn2r-ps15 - - 4|4 E1 vomeronasal 2, receptor, pseudogene 15 pseudo 664969 XM_973722 Gm7429 EG664969 - X|X E1 predicted pseudogene 7429 protein-coding 621353 Gm6216 EG621353 - 1|1 A3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 17285 Mm.3404 NM_010791 ENSMUSG00000001493 Meox1 AI385561|D330041M02Rik|Mox-1|Mox1 - 11 D|11 65.48 cM mesenchyme homeobox 1 protein-coding 102633636 XR_386803 Gm31418 - - 19 D2|19 predicted gene, 31418 ncRNA 110120546 LOC110120546 - - - VISTA enhancer mm1164 biological-region 102640387 Mm.25318 XR_001781963 Gm36457 - - 16 C1.3|16 predicted gene, 36457 protein-coding 68565 Mm.287443 NM_026768 ENSMUSG00000023967 Mrps18a 1110004O20Rik|C79712 - 17|17 C mitochondrial ribosomal protein S18A protein-coding 100416060 Gm12583 - - 3|3 B nucleophosmin 1 pseudogene pseudo 111043 Hsp86-ps4 86kDa - - heat shock protein 86, pseudogene 4 pseudo 12814 Mm.209715 NM_007729 ENSMUSG00000027966 Col11a1 C530001D20Rik|cho - 3 F3|3 49.35 cM collagen, type XI, alpha 1 protein-coding 114311 Lprm5 - - 16 19.88 cM lymphoproliferation modifier 5 unknown 105243162 XR_870311 Gm39157 Gm45816 - 8 A4|8 predicted gene, 39157 ncRNA 52400 Mm.16974 D7Ertd602e - - - DNA segment, Chr 7, ERATO Doi 602, expressed unknown 625057 Gm6550 EG625057 - 1|1 F lactate dehydrogenase A pseudogene pseudo 632737 Gm9890 - - 14|14 B predicted gene 9890 protein-coding 226016 Mm.28796 NM_146096 ENSMUSG00000047368 Abhd17b 5730446C15Rik|Cgi67|Fam108b|Fam108b1 - 19|19 B abhydrolase domain containing 17B protein-coding 258435 Mm.377500 NM_146443 ENSMUSG00000095312 Olfr382 MOR135-14 - 11|11 B4 olfactory receptor 382 protein-coding 100504496 Mm.484272 Gm20255 - - 11|11 51.27 cM predicted gene, 20255 unknown 105246650 XR_878337 Gm41908 - - 1 C5|1 predicted gene, 41908 ncRNA 70291 Mm.133694 NM_001101431 ENSMUSG00000068011 Mkrn2os 2510049J12Rik - 6|6 E3 makorin, ring finger protein 2, opposite strand protein-coding 258085 Mm.377344 NM_001011825 ENSMUSG00000075165 Olfr1105 MOR0-6P|MOR172-7 - 2|2 D olfactory receptor 1105 protein-coding 13118 Mm.448292 NM_172306 ENSMUSG00000078597 Cyp4a12b BC060945|Cyp4a12 - 4|4 D1 cytochrome P450, family 4, subfamily a, polypeptide 12B protein-coding 76100 Mm.48212 NR_073359 ENSMUSG00000052658 5830454E08Rik - - 9|9 F4 RIKEN cDNA 5830454E08 gene ncRNA 77087 Mm.31567 NM_001081379 ENSMUSG00000035569 Ankrd11 2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod - 8|8 E1 ankyrin repeat domain 11 protein-coding 53153 RH125-126 - - - DNA segment, RH125-126 unknown 53808 D7H19F11S1 D19F11S1h - - DNA segment, Chr 7, human D19F11S1 unknown 319943 Mm.446992 A630074N13Rik - - 10|10 RIKEN cDNA A630074N13 gene protein-coding 791325 Mm.10812 Gm9902 - - - predicted gene 9902 unknown 105243267 XR_879137 Gm39235 - - 8 D2|8 predicted gene, 39235 ncRNA 252973 Mm.244612 NM_026496 ENSMUSG00000022286 Grhl2 0610015A08Rik|BOM|Tcfcp2l3|clft3 - 15|15 B3.1 grainyhead like transcription factor 2 protein-coding 629812 Ighv16-1 EG629812|Gm7005|IGHV5-20 - 12|12 F1 immunoglobulin heavy variable 16-1 other 105244458 XR_867339 Gm40063 - - 3 E1|3 predicted gene, 40063 ncRNA 100041855 Vmn2r-ps100 - - 13|13 B3 vomeronasal 2, receptor, pseudogene 100 pseudo 218442 Mm.297970 NM_172588 ENSMUSG00000021703 Serinc5 A130038L21Rik|AIGP3|C86123|TPO1 - 13|13 C3 serine incorporator 5 protein-coding 12421 Mm.293811 NM_009826 ENSMUSG00000025907 Rb1cc1 2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180 - 1|1 A1 RB1-inducible coiled-coil 1 protein-coding 102631717 XR_385443 Gm29986 - - 17 A3.2|17 predicted gene, 29986 protein-coding 100042943 Mm.489576 NM_001242952 ENSMUSG00000095662 H2al1g Gm14482 - X A1.1|X H2A histone family member L1G protein-coding 67603 Mm.1791 NM_026268 ENSMUSG00000019960 Dusp6 1300019I03Rik|MKP-3|MKP3|PYST1 - 10|10 D1 dual specificity phosphatase 6 protein-coding 105242621 Mm.389732 NR_153845 Gm6117 EG619959 - 6|6 A3.3 predicted gene 6117 ncRNA 100043604 Mm.334360 NM_001122682 ENSMUSG00000074322 Vmn1r132 EG667346|Gm16448 - 7|7 A3 vomeronasal 1 receptor 132 protein-coding 102636779 XR_386848 Gm33756 Gm45361 - 19 D3|19 predicted gene, 33756 ncRNA 105245852 XR_874944 Gm41241 - - 14 E2.3|14 predicted gene, 41241 ncRNA 68952 Mm.440393 NM_026884 ENSMUSG00000058966 Fam57b 1500016O10Rik|A330104J06Rik|AI413816|AW060769 - 7|7 F3 family with sequence similarity 57, member B protein-coding 105245875 XR_875008 Gm41258 - - 15 A1|15 predicted gene, 41258 ncRNA 100417211 Gm18453 - - 7|7 B5 crumbs homolog 1 pseudogene pseudo 105244412 Gm40024 - - 2|2 predicted gene, 40024 protein-coding 100040610 Gm15212 - - X|X F5 predicted gene 15212 pseudo 110041 Mse1 Mse-1 - - esterase modifying locus 1 protein-coding 73988 XM_001477470 ENSMUSG00000069873 4930438A08Rik - - 11|11 B1.3 RIKEN cDNA 4930438A08 gene protein-coding 11867 Mm.30010 NM_023142 ENSMUSG00000029622 Arpc1b 41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC - 5|5 G2 actin related protein 2/3 complex, subunit 1B protein-coding 102642633 XR_877703 Gm38621 - - 19 A|19 predicted gene, 38621 ncRNA 100042254 NM_001099643 ENSMUSG00000078213 Btbd35f4 Gm3750 - X A1.1|X BTB domain containing 35, family member 4 protein-coding 20461 Mm.256035 Gm14270 SIG-111|Silg111 - 2 H3|2 silica-induced gene 111 pseudo 105246909 Gm42106 - - 5|5 predicted gene, 42106 ncRNA 109383 Bwq2 - - - body weight QTL 2 unknown 66260 Mm.25295 NM_025452 ENSMUSG00000028786 Tmem54 1810017F10Rik|AI507302 - 4|4 D2.2 transmembrane protein 54 protein-coding 108167649 XR_001779151 Gm46109 - - 9 A5.2|9 predicted gene, 46109 ncRNA 108181 Rps16-ps1 Rps16-ps - - ribosomal protein S16, pseudogene 1 pseudo 102639972 XR_375960 Gm10961 - - 3 F2.3|3 46.83 cM predicted gene 10961 ncRNA 68232 Mm.347960 NM_026628 ENSMUSG00000099579 1700120K04Rik - - 7|7 F3 RIKEN cDNA 1700120K04 gene ncRNA 27876 D1Dau7e - - - DNA segment, Chr 1, DA Underhill 7, expressed unknown 434121 Mm.482762 NM_001101534 ENSMUSG00000074377 Sult2a4 EG434121|Gm5584 - 7|7 A1 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 4 protein-coding 66865 Mm.250359 NM_173180 ENSMUSG00000026926 Pmpca 1200002L24Rik|4933435E07Rik|Alpha-MPP|P-55 - 2|2 A3 peptidase (mitochondrial processing) alpha protein-coding 667377 Gm8599 EG667377 - 3 E2|3 predicted gene 8599 pseudo 257916 Mm.377301 NM_001011759 ENSMUSG00000043267 Olfr1031 MOR200-1 - 2|2 D olfactory receptor 1031 protein-coding 360039 D17Jcs6 - - - DNA segment, Chr 17, John C. Schimenti 6 unknown 100101939 Trav20 Gm14030 - 14|14 C2 T cell receptor alpha variable 20 pseudo 387248 NR_029730 ENSMUSG00000105758 Mirlet7e Mirnlet7e|mmu-let-7e - 17|17 A3.2 microRNA let7e ncRNA 100504241 Scgb1b34-ps Abpa28-ps|Gm20129|Scgb1b28-ps - 7 B1|7 19.36 cM secretoglobin, family 1B, member 34, pseudogene pseudo 52803 D7Bwg0612e - - - DNA segment, Chr 7, Brigham & Women's Genetics 0612 expressed unknown 52683 Mm.143167 NM_001115132 ENSMUSG00000008690 Ncaph2 - - 15 E3|15 44.84 cM non-SMC condensin II complex, subunit H2 protein-coding 71846 Mm.229128 NM_027954 ENSMUSG00000003824 Syce2 1700013H19Rik|AA407907|Cesc1 - 8|8 C3 synaptonemal complex central element protein 2 protein-coding 386506 Gm5408 EG386506 - 14|14 C2 solute carrier family 45, member 4 pseudogene pseudo 105245140 Gm40633 - - 10|10 predicted gene, 40633 ncRNA 100502671 Gm19314 - - 11|11 7.69 cM predicted gene, 19314 pseudo 105244928 XR_869823 Gm40450 - - 7 E1|7 predicted gene, 40450 ncRNA 109279875 LOC109279875 Mm80 - - VISTA enhancer mm80 biological-region 102631693 XR_386291 Gm29966 - - 18 E1|18 predicted gene, 29966 ncRNA 97817 C80717 - - - expressed sequence C80717 unknown 61263 D2Mit170 - - 2 83.32 cM DNA segment, Chr 2, Massachusetts Institute of Technology 170 unknown 668039 Mm.466613 NM_001101804 ENSMUSG00000078881 Gm14434 - - 2|2 H4 predicted gene 14434 protein-coding 22268 Mm.130793 NM_178924 ENSMUSG00000049436 Upk1b AI413235|Tspan20|UPIb|Upk1 - 16|16 B4 uroplakin 1B protein-coding 105244185 Gm39838 - - 2|2 predicted gene, 39838 ncRNA 100124495 NR_030569 ENSMUSG00000078025 Mir466g Mirn466g - 2 A1|2 microRNA 466g ncRNA 102631894 XR_384131 Gm30113 - - 15 D1|15 predicted gene, 30113 ncRNA 100035033 Arigm4 - - - anti-RBC IgM antibodies 4 unknown 102631990 Gm21825 - - Y|Y predicted gene, 21825 protein-coding 73916 Mm.241276 NM_028680 ENSMUSG00000032965 Ift57 4833420A15Rik|Esrrbl1|Hippi|MHS4R2 - 16|16 B5 intraflagellar transport 57 protein-coding 105246239 XR_001782134 Gm41551 - - 17 A3.3|17 predicted gene, 41551 ncRNA 61748 D4Mit257 - - 4 23.57 cM DNA segment, Chr 4, Massachusetts Institute of Technology 257 unknown 333467 Mm.387257 NM_001033769 ENSMUSG00000078537 B020031M17Rik - - 13|13 D2.3 RIKEN cDNA B020031M17 gene protein-coding 72941 2900042E19Rik - - 17|17 RIKEN cDNA 2900042E19 gene protein-coding 14813 Mm.39090 NM_010350 ENSMUSG00000020734 Grin2c GluN2C|NMDAR2C|NR2C - 11 E2|11 80.8 cM glutamate receptor, ionotropic, NMDA2C (epsilon 3) protein-coding 667291 Gm13578 - - 2|2 C1.3 predicted gene 13578 pseudo 100502849 Mm.392082 XR_385545 Gm19412 - - 17 B1|17 17.98 cM predicted gene, 19412 ncRNA 108168740 XM_017319366 Gm46731 - - 2 A1|2 predicted gene, 46731 protein-coding 434766 Mm.350894 NM_001114153 ENSMUSG00000079629 Rhox2g EG434766|Rhox2.7|Rhox2f - X|X A3.3 reproductive homeobox 2G protein-coding 78830 Mm.30928 NM_172436 ENSMUSG00000027010 Slc25a12 2610002D09Rik|AI839531|B230107K20Rik|BB129864 - 2|2 C2 solute carrier family 25 (mitochondrial carrier, Aralar), member 12 protein-coding 100417909 Gm18894 - - 3|3 F2.2 DnaJ (Hsp40) homolog, subfamily B, member 6 pseudogene pseudo 27081 Mm.26595 NM_031494 ENSMUSG00000031365 Zfp275 5430431L06Rik|AI593314|DXBay20|DXHXS52|DXPas8 - X A7.3|X 37.29 cM zinc finger protein 275 protein-coding 320905 Mm.442097 A130026F07Rik - - 13|13 RIKEN cDNA A130026F07 gene protein-coding 665577 XR_001778035 Gm7696 EG665577 - 7|7 A1 predicted gene 7696 unknown 102638942 Gm28685 - - 5|5 predicted gene 28685 pseudo 669823 Tgif1-ps Gm9470 - 3|3 D TGFB-induced factor homeobox 1, pseudogene pseudo 664897 Gm7395 EG664897 - 9|9 B karyopherin alpha 7 (importin alpha 8) pseudogene pseudo 101488143 Mm.467412 NM_008220 ENSMUSG00000073940 Hbb-bt Beta-t - 7 E3|7 hemoglobin, beta adult t chain protein-coding 69309 Mm.93266 NM_172371 ENSMUSG00000044367 Slc16a13 1700007D07Rik - 11|11 B3 solute carrier family 16 (monocarboxylic acid transporters), member 13 protein-coding 19634 Rb(9.14)6Bnr Rb6Bnr - - Robertsonian translocation, Chr 9 and 14, Universitat Bonn/Rhein 6 other 242667 Mm.331885 NM_198618 ENSMUSG00000042388 Dlgap3 BC058433|DAP-3|DAP3|Prpl8|Sapap3 - 4 D2.2|4 61.33 cM DLG associated protein 3 protein-coding 257666 Mm.377270 NM_146266 ENSMUSG00000107662 Olfr772 GA_x5J8B7W1NLL-1408-2343|MOR114-3 - 10|10 D3 olfactory receptor 772 protein-coding 61414 D5Mit183 - - 5 29.12 cM DNA segment, Chr 5, Massachusetts Institute of Technology 183 unknown 14060 Mm.30105 NM_031164 ENSMUSG00000026368 F13b Cf-13b|Cf13b - 1 61.57 cM|1 F coagulation factor XIII, beta subunit protein-coding 433050 Rpl26-ps4 EG433050|Gm5489|Rpl26l1 - 16|16 A3 ribosomal protein L26, pseudogene 4 pseudo 102634601 XR_381075 Gm32142 - - 11 A3.1|11 predicted gene, 32142 ncRNA 108511964 Vav2r10 - - 2 A3 Vav2R10 erythroid cis-regulatory module biological-region 238252 Mm.390508 NM_181752 ENSMUSG00000043398 Gpr135 PAFR - 12|12 C3 G protein-coupled receptor 135 protein-coding 102635348 Gm32711 - - 5 A3|5 predicted gene, 32711 pseudo 102631579 XR_380037 Gm26752 - - 10 A1|10 predicted gene, 26752 ncRNA 98514 AU015232 - - - expressed sequence AU015232 unknown 14696 Mm.139192 NM_013531 ENSMUSG00000027669 Gnb4 6720453A21Rik|G(beta)4 - 3|3 A3 guanine nucleotide binding protein (G protein), beta 4 protein-coding 653030 Mm.440684 NR_045346 ENSMUSG00000085887 Arhgap27os3 F830206d12rik|Gm11648 - 11|11 E1 Rho GTPase activating protein 27, opposite strand 3 ncRNA 100035621 Motp1 MOP1 - 11 42.99 cM modifier of Trp53 1 unknown 105247158 XR_881386 Gm42309 - - 4 C3|4 predicted gene, 42309 ncRNA 666613 Gm11604 - - 11|11 D ribosomal protein S6 pseudogene pseudo 53769 DXHXS296 DXS296h - - DNA segment, Chr X, human DXS296 unknown 99507 AA522016 - - - expressed sequence AA522016 unknown 106050031 Sbe4 - - - Shh brain enhancer 4 biological-region 21077 T(13;14)69H T69H - - reciprocal translocation, Chr 13 and 14, Harwell 69 other 100036241 Epfq2 - - - epididymal fat pad weight QTL 2 unknown 102631723 XR_386070 Gm29992 - - 18 A1|18 predicted gene, 29992 ncRNA 102639103 XR_388603 Gm35497 - - 11 B1.1|11 predicted gene, 35497 ncRNA 72781 2810468A05Rik - - 11|11 RIKEN cDNA 2810468A05 gene protein-coding 100418152 Gm19038 - - 6|6 D1 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 239606 Mm.360596 NM_001033633 ENSMUSG00000036298 Slc2a13 6530403A04|A630029G22Rik|AI505012|Gm308 - 15|15 E3 solute carrier family 2 (facilitated glucose transporter), member 13 protein-coding 22437 Mm.10117 NM_011724 ENSMUSG00000079243 Xirp1 AI415219|Cmya1 - 9|9 F4 xin actin-binding repeat containing 1 protein-coding 102632626 Gm30652 - - 5|5 predicted gene, 30652 pseudo 111388 Emv13 Akv-3|Akvp|Emv-13 - - endogenous ecotropic MuLV 13 other 110249 Myo1f-rs1 - - - myosin IF, related sequence 1 protein-coding 53108 EC218RL - - - DNA segment, EC218RL unknown 108168560 XR_001782919 ENSMUSG00000100565 Gm28091 - - Y A2|Y predicted gene 28091 ncRNA 56577 43f9Sp6 - - - DNA segment, 43f9Sp6 unknown 100415999 Gm15252 - - X|X A1.1 predicted gene 15252 pseudo 71420 5530400N10Rik - - 15|15 RIKEN cDNA 5530400N10 gene protein-coding 545847 Mm.333117 Igkv14-111 Gm16939 - 6|6 C1 immunoglobulin kappa variable 14-111 other 78809 Mm.325551 NM_030192 ENSMUSG00000022518 4930562C15Rik - - 16 A1|16 2.47 cM RIKEN cDNA 4930562C15 gene protein-coding 56218 Mm.275563 NM_019574 ENSMUSG00000020453 Patz1 8430401L15Rik|AI447519|Mazr|Patz|Zfp278 - 11|11 A1 POZ (BTB) and AT hook containing zinc finger 1 protein-coding 102638580 XR_382311 Gm35110 - - 13 A5|13 predicted gene, 35110 ncRNA 21955 Mm.358643 NM_011618 ENSMUSG00000064179 Tnnt1 AW146156|Tnt|sTnT|ssTnT - 7 A1|7 2.6 cM troponin T1, skeletal, slow protein-coding 102633859 Gm31584 - - 1|1 predicted gene, 31584 ncRNA 665969 Gm15303 - - 8 A2|8 zinc finger, MYM-type 5 pseudogene pseudo 73396 Mm.416859 XR_168421 ENSMUSG00000105274 1700048F04Rik - - 5|5 G1.1 RIKEN cDNA 1700048F04 gene ncRNA 61919 D4Mit303 - - 4 45.55 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 303 unknown 258998 Mm.223385 NM_146996 ENSMUSG00000063137 Olfr177 MOR184-7 - 16|16 C1.2 olfactory receptor 177 protein-coding 107847 Trex2a - - - Tcr1 region expressed 2, D17Leh66a region protein-coding 100040035 XM_006538415 Gm2564 - - 4 A5|4 predicted gene 2564 protein-coding 237500 Mm.296805 NM_001033332 ENSMUSG00000036676 Tmtc3 9130014E20Rik|B130008E12Rik|mSmile - 10|10 D1 transmembrane and tetratricopeptide repeat containing 3 protein-coding 638890 Gm12690 - - 4|4 C6 predicted gene 12690 protein-coding 108167615 XR_001778833 Gm46085 - - 1 A3|1 predicted gene, 46085 ncRNA 105245162 XR_873099 Gm40653 - - 13 A1|13 predicted gene, 40653 ncRNA 102573 Mm.325758 AI662168 - - - expressed sequence AI662168 unknown 74050 Mm.84860 NR_045061 ENSMUSG00000113211 4921525O09Rik - - 13|13 A5 RIKEN cDNA 4921525O09 gene ncRNA 100416841 Gm18288 - - 4|4 C6 SCAN domain containing 3 pseudogene pseudo 113841 Insq7 - - 2 18.92 cM insulin QTL 7 unknown 27851 DXIum1 - - 16 55.69 cM DNA segment, Chr X, Indiana University Medical 1 unknown 108169147 XR_001785269 LOC108169147 - - 6 C1 uncharacterized LOC108169147 ncRNA 435378 Gm5668 EG435378 - 13|13 D1 predicted gene 5668 pseudo 21241 T(6;7)51H T51H - - reciprocal translocation, Chr 6 and 7, Harwell 51 other 100043597 Mm.428042 NM_175144 ENSMUSG00000053877 Srcap B930091H02Rik|D030022P06Rik|F630004O05Rik - 7|7 F3 Snf2-related CREBBP activator protein protein-coding 11418 Mm.234998 NM_007384 ENSMUSG00000020704 Asic2 ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg - 11 B5|11 48.43 cM acid-sensing (proton-gated) ion channel 2 protein-coding 22654 Mm.40326 NM_011747 ENSMUSG00000062012 Zfp13 AI835008|Krox-8|Zfp-13 - 17|17 A3.3 zinc finger protein 13 protein-coding 195733 Mm.263068 NM_145890 ENSMUSG00000020656 Grhl1 LBP-32|MGR|Tcfcp2l2 - 12|12 A1.3 grainyhead like transcription factor 1 protein-coding 105748 AA545189 - - - expressed sequence AA545189 unknown 100036004 Hfem2 - - - Hfe modifier 2 unknown 110176 Hh1 Hh-1 - - hemopoietic histocompatibility protein-coding 243753 Mm.440221 NM_001025573 ENSMUSG00000029847 Slc23a4 2010107G12Rik|Gm468 - 6|6 B1 solute carrier family 23 member 4 protein-coding 56703 Mm.143738 NM_020035 ENSMUSG00000028454 Pigo PIG-O - 4|4 A5 phosphatidylinositol glycan anchor biosynthesis, class O protein-coding 384440 Gm5311 EG384440 - 6|6 C3 tubulin, alpha 1B pseudogene pseudo 102467525 n-TEttc6 n-Te16 - 14 D3|14 nuclear encoded tRNA glutamic acid 6 (anticodon TTC) tRNA 60364 Mm.328698 NM_021720 ENSMUSG00000022960 Donson 1110025J21Rik|AI845729|ORF60 - 16|16 C4 downstream neighbor of SON protein-coding 11564 Mm.38151 NM_009634 ENSMUSG00000022407 Adsl Adl|Asl - 15 E1|15 37.95 cM adenylosuccinate lyase protein-coding 14378 Mm.140768 NM_021331 ENSMUSG00000005232 G6pc2 G6pc-rs|IGRP - 2 C2|2 39.66 cM glucose-6-phosphatase, catalytic, 2 protein-coding 12192 Mm.235132 NM_007564 ENSMUSG00000021127 Zfp36l1 AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1 - 12|12 C3 zinc finger protein 36, C3H type-like 1 protein-coding 213811 Mm.441077 NM_145397 ENSMUSG00000060149 BC002059 - - 17|17 A3.1 cDNA sequence BC002059 unknown 108168912 XR_001784053 Gm46832 - - 3 A1|3 predicted gene, 46832 ncRNA 108311 Mmv11 Mmv-11 - - MCF endogenous virus 11 other 111396 Emv24 Emv-24 - - endogenous ecotropic MuLV 24 other 111598 Pmv56 Pmv-56 - - polytropic murine leukemia virus 56 other 111293 Hmgn2-rs7 Hmg17-rs7 - - high mobility group nucleosomal binding domain 2, related sequence 7 pseudo 231571 Mm.482420 NM_144911 ENSMUSG00000033773 Rpap2 AW060207 - 5|5 E5-F RNA polymerase II associated protein 2 protein-coding 59095 Mm.208287 NM_022004 ENSMUSG00000066705 Fxyd6 0610030I18Rik|Php - 9|9 A5.2 FXYD domain-containing ion transport regulator 6 protein-coding 97695 C77648 - - - expressed sequence C77648 unknown 668242 Gm9061 EG668242 - 16|16 C1.3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105245915 Gm41295 - - 15|15 predicted gene, 41295 ncRNA 73299 Mm.10647 NM_175196 1700041G16Rik Jems - 8|8 A2 RIKEN cDNA 1700041G16 gene unknown 105245766 XR_874668 Gm41164 - - 14 D1|14 predicted gene, 41164 ncRNA 60978 D16Mit4 - - 16 25.43 cM DNA segment, Chr 16, Massachusetts Institute of Technology 4 unknown 100042968 Mm.480292 NM_001166836 ENSMUSG00000094545 Vmn1r101 Gm4135 - 7 A3|7 vomeronasal 1 receptor 101 protein-coding 666203 Mm.380154 NM_001270457 ENSMUSG00000096139 Gm7978 EG666203 - 5 E3|5 predicted gene 7978 protein-coding 194360 Gm4744 EG194360|Tryx4 - 6|6 B1 trypsinogen pseudogene pseudo 102636546 XR_874663 Gm33582 - - 14 D1|14 predicted gene, 33582 ncRNA 102634491 XR_001780536 Gm32062 - - 12 E|12 predicted gene, 32062 ncRNA 78575 Mm.407669 NR_029474 ENSMUSG00000103622 B430319G15Rik D530025C14Rik - 9|9 E3.3 RIKEN cDNA B430319G15 gene ncRNA 75345 Mm.164642 NM_144539 ENSMUSG00000038179 Slamf7 19A|19A24|4930560D03Rik|CRACC|CS1 - 1|1 H3 SLAM family member 7 protein-coding 94227 Mm.442452 NM_053191 ENSMUSG00000067780 Pi15 P24TI|P25TI|PI-15|SugarCrisp - 1|1 A3 peptidase inhibitor 15 protein-coding 68172 Mm.23690 NM_026594 ENSMUSG00000039209 Rpl39l 4930517K11Rik - 16|16 A1 ribosomal protein L39-like protein-coding 62104 D11Mit98 - - 11 60.14 cM DNA segment, Chr 11, Massachusetts Institute of Technology 98 unknown 399549 Mm.329034 NM_201611 ENSMUSG00000037130 H2-M10.6 - - 17|17 B1 histocompatibility 2, M region locus 10.6 protein-coding 16372 Mm.28888 NM_010574 ENSMUSG00000001504 Irx2 - - 13 C1|13 39.23 cM Iroquois homeobox 2 protein-coding 12009 Mm.2556 NM_009734 ENSMUSG00000039781 Cep131 AZ1|Azi|Azi1 - 11|11 E2 centrosomal protein 131 protein-coding 102632786 XR_380932 ENSMUSG00000092593 Gm20492 - - 10 D3|10 74.5 cM predicted gene 20492 ncRNA 100038598 Gm10386 - - 11 B5|11 predicted gene 10386 protein-coding 105246043 XR_875667 Gm41403 - - 15 F2|15 predicted gene, 41403 ncRNA 111175 Mm.281738 NM_023523 ENSMUSG00000026189 Pecr 2400003B18Rik|TERP - 1 C3|1 36.46 cM peroxisomal trans-2-enoyl-CoA reductase protein-coding 100036511 Tilss2 - - 11 71.83 cM TNF-induced lethal shock susceptibility 2 unknown 12532 Mm.286602 NM_009860 ENSMUSG00000044201 Cdc25c Cdc25 - 18 B1|18 18.71 cM cell division cycle 25C protein-coding 66853 Mm.29998 NM_025802 ENSMUSG00000025509 Pnpla2 0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2 - 7|7 F5 patatin-like phospholipase domain containing 2 protein-coding 97383 C80278 - - - expressed sequence C80278 unknown 13449 Mm.243323 NM_010071 ENSMUSG00000022102 Dok2 DokR|Frip|dok-R - 14 D2|14 36.71 cM docking protein 2 protein-coding 353283 Mm.250895 NM_181548 ENSMUSG00000031160 Eras HRAS2|HRasp|Ha-Ras2|ecat5 - X|X A1.1 ES cell-expressed Ras protein-coding 102640889 XR_378394 Gm36847 - - 7 E3|7 predicted gene, 36847 ncRNA 52977 1h9 - - - DNA segment, 1h9 unknown 108720140 LOC108720140 - - 8 D3 ES cell cis-regulatory motif 8a biological-region 108679 Mm.119177 NM_133805 ENSMUSG00000034432 Cops8 9430009J09Rik|AA408242|Csn8|Sgn8 - 1|1 D COP9 signalosome subunit 8 protein-coding 105245599 XR_873826 Gm41030 - - 13 D1|13 predicted gene, 41030 ncRNA 66711 Mm.280484 NM_023248 ENSMUSG00000025337 Sbds 4733401P19Rik|AI836084|CGI-97|SDS - 5|5 G1.3 SBDS ribosome maturation factor protein-coding 108250 Gapdh-ps2 Gapd-ps2|domes2 - - glyceraldehyde-3-phosphate dehydrogenase, pseudogene 2 pseudo 74851 Mm.431329 NM_029106 Spin2-ps1 Gm14354 - X|X A1.1 spindlin family, member 2, pseudogene 1 protein-coding 628573 Gm6897 EG628573 - X|X A7.3 predicted pseudogene 6897 protein-coding 102640168 XR_377970 Gm36301 - - 6 E3|6 predicted gene, 36301 ncRNA 76233 Mm.440009 NM_133763 ENSMUSG00000017299 Dnttip1 6430706C13Rik - 2|2 H3 deoxynucleotidyltransferase, terminal, interacting protein 1 protein-coding 14268 Mm.193099 NM_010233 ENSMUSG00000026193 Fn1 E330027I09|Fn|Fn-1 - 1 C3|1 36.05 cM fibronectin 1 protein-coding 100036090 Erars2 - - 4 51.36 cM erosive arthritis susceptibility 2 unknown 667041 Gm8433 EG667041 - 8 A4|8 a disintegrin and metallopeptidase domain 39 pseudogene pseudo 387165 NR_030547 ENSMUSG00000076309 Mir147 Mirn147|mmu-mir-147 - 2 E5|2 microRNA 147 ncRNA 52274 D8Ertd381e - - - DNA segment, Chr 8, ERATO Doi 381, expressed unknown 109279982 LOC109279982 Mm686 - - VISTA enhancer mm686 biological-region 492843 Hrtfm1 Hfm1 - 2 40.88 cM heart failure modifier 1 unknown 620018 XM_001472000 Gm6124 - - 7 B3|7 predicted gene 6124 protein-coding 102634762 XR_387416 Gm32267 - - 1 E4|1 predicted gene, 32267 ncRNA 77270 9430007M09Rik - - 5|5 RIKEN cDNA 9430007M09 gene protein-coding 13549 Mm.57249 NM_010092 ENSMUSG00000002409 Dyrk1b Mirk - 7|7 A3 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b protein-coding 23837 Mm.279437 NM_011801 ENSMUSG00000031954 Cfdp1 AA408409|Bcnt|Bucentaur|Cfdp|cp27 - 8|8 E1 craniofacial development protein 1 protein-coding 100041579 Mm.389537 NM_001270431 ENSMUSG00000078747 Gm20878 - - 4 A5|4 predicted gene, 20878 protein-coding 102466778 NR_105942 ENSMUSG00000106514 Mir6976 mmu-mir-6976 - 17|17 C microRNA 6976 ncRNA 74594 4833421K07Rik - - 7|7 B4 RIKEN cDNA 4833421K07 gene protein-coding 102635259 XR_383281 Gm32645 - - 14 A3|14 predicted gene, 32645 ncRNA 108168849 Gm37358 - - 3 A1|3 cysteine and glycine-rich protein 1 pseudogene pseudo 116948 Naad8 - - - Neu associated allelic deletion 8 other 217337 Mm.29655 NM_146032 ENSMUSG00000020780 Srp68 2610024I03Rik - 11|11 E2 signal recognition particle 68 protein-coding 76809 Mm.290720 NM_029752 ENSMUSG00000037905 Bri3bp 2410150I18Rik|AI841257|AW742481 - 5|5 G1.1 Bri3 binding protein protein-coding 54000 D16Jhu25 153F7.SP6 - 16 54.47 cM DNA segment, Chr 16, Johns Hopkins University 25 unknown 232714 Mm.33401 NM_001171003 ENSMUSG00000068587 Mgam 6030407P20Rik|MGA - 6|6 B1 maltase-glucoamylase protein-coding 108168991 XR_001784523 Gm46879 - - 4 A1|4 predicted gene, 46879 ncRNA 61929 D5Mit365 - - 5 50.68 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 365 unknown 100034759 Mom3 - - - modifier of Min 3 unknown 102636740 XR_390693 Gm33730 - - 4 C4|4 predicted gene, 33730 ncRNA 11993 Mm.386752 NM_007517 ENSMUSG00000068328 Aup1 AA589454 - 6 C3|6 35.94 cM ancient ubiquitous protein 1 protein-coding 71818 Mm.490789 NR_045888 ENSMUSG00000113434 3200001D21Rik - - 12|12 D2 RIKEN cDNA 3200001D21 gene ncRNA 108167369 XR_001780531 Gm45964 - - 12 C1|12 predicted gene, 45964 ncRNA 52536 D13Ertd219e - - 13 40.95 cM DNA segment, Chr 13, ERATO Doi 219, expressed unknown 96952 C76662 - - - expressed sequence C76662 unknown 19643 Rb(X.9)6H Rb6H - - Robertsonian translocation, Chr X and 9, Harwell 6 other 751542 NR_030460 ENSMUSG00000076009 Mir688 Mirn688|mmu-mir-688 - 15 F3|15 microRNA 688 ncRNA 108167569 Gm45651 - - 8 B3.1|8 predicted gene 45651 pseudo 67500 Mm.196371 NM_026201 ENSMUSG00000020074 Ccar1 2610511G16Rik|9430036H15Rik|Carp1 - 10|10 B4 cell division cycle and apoptosis regulator 1 protein-coding 18292 Mm.134360 NM_008759 ENSMUSG00000001103 Sebox OG9|Og9x - 11 B5|11 46.74 cM SEBOX homeobox protein-coding 216188 Mm.263138 NM_153543 ENSMUSG00000020256 Aldh1l2 D330038I09Rik|mtFDH - 10|10 C1 aldehyde dehydrogenase 1 family, member L2 protein-coding 100196896 Mm.444764 NR_152819 BC048559 - - 10 B2|10 cDNA sequence BC048559 ncRNA 622485 Mm.439946 4930526A20Rik - - 17|17 A3.3 tRNA splicing endonuclease 34 pseudogene pseudo 105243169 XR_870342 Gm39161 - - 8 A4|8 predicted gene, 39161 ncRNA 109794 Cyx - - - cycloheximide tasting unknown 328353 Mm.209198 D030051J21Rik Gm742 - 14|14 A1 RIKEN cDNA D030051J21 gene protein-coding 111641 Ms66 MMS66 - - minisatellites detected by probe MMS66 other 108224 Vbp1-ps1 - - - Von Hippel Lindau binding protein 1, pseudogene 1 pseudo 60705 D3Mit62 - - 3 4.85 cM DNA segment, Chr 3, Massachusetts Institute of Technology 62 unknown 100125294 Tglq6 Tglq2b|Tglq4b - - triglyceride QTL 6 unknown 102466631 NR_105767 ENSMUSG00000098833 Mir6349 Gm27558|mmu-mir-6349 - 1|1 B microRNA 6349 ncRNA 102465712 NR_106093 ENSMUSG00000105381 Mir7234 mmu-mir-7234 - 7|7 D1 microRNA 7234 ncRNA 102642191 Mm.489082 LOC102642191 - - - uncharacterized LOC102642191 ncRNA 232933 Mm.333624 NM_001033314 ENSMUSG00000074358 Ccdc61 C530028I08Rik|Gm159 - 7|7 A3 coiled-coil domain containing 61 protein-coding 78827 Mm.61414 5830426C09Rik - - 4|4 E1 RIKEN cDNA 5830426C09 gene protein-coding 270015 Gm5054 EG270015 - 7|7 F5 predicted gene 5054 pseudo 100042466 Gm10601 Gm11008 - 4 A5|4 ethanol induced 1 pseudogene pseudo 72433 Mm.276669 NM_028238 ENSMUSG00000030559 Rab38 2310011F14Rik|AU043391|cht - 7 D3|7 49.19 cM RAB38, member RAS oncogene family protein-coding 72982 Mm.391194 NM_028411 ENSMUSG00000024666 Tmem138 1700113I01Rik|2900055D14Rik - 19|19 A transmembrane protein 138 protein-coding 105246576 XR_877860 Gm41847 - - 19 C3|19 predicted gene, 41847 ncRNA 102635157 XR_373300 Gm32566 - - 1 B|1 predicted gene, 32566 ncRNA 108167559 XR_001778680 Gm46057 - - 8 E1|8 predicted gene, 46057 ncRNA 20841 Mm.10815 NM_009281 ENSMUSG00000061079 Zfp143 AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1 - 7 E3|7 57.7 cM zinc finger protein 143 protein-coding 102635989 XR_391029 Gm33187 - - 4 E2|4 predicted gene, 33187 ncRNA 105243259 XR_001778758 Gm39228 Gm45806 - 8 C5|8 predicted gene, 39228 ncRNA 243090 Mm.302586 XR_140737 BC051076 - - 5|5 E1 cDNA sequence BC051076 unknown 243642 Gm4968 EG243642 - 6|6 F3 ribosomal protein S2 pseudogene pseudo 78452 9530075M24Rik - - 17|17 RIKEN cDNA 9530075M24 gene protein-coding 619441 Mm.8983 NM_001034097 ENSMUSG00000018752 Tnfsfm13 Tnfsf12-Tnfsf13|Tnfsf12Tnfsf13|Tnfsf12tnfsf13|Twe-pril - 11|11 B3 tumor necrosis factor (ligand) superfamily, membrane-bound member 13 protein-coding 75527 Mm.309402 1700015H07Rik - - 15|15 RIKEN cDNA 1700015H07 gene protein-coding 27683 D11Moh18 - - - DNA segment, Chr 11, KL Mohlke 18 unknown 16220 In(1)1Rk-d In(1)1Rk|In1Rk - - inversion, Chr 1, Roderick 1, distal other 631002 Mm.379565 NM_001081565 ENSMUSG00000079703 Ssxb8 - - X|X A1.1 synovial sarcoma, X member B8 protein-coding 100035353 Bwtn5 WTN18.1 - 18 21.09 cM body weight at necropsy 5 unknown 102631685 XR_379197 Gm29642 - - 9 A4|9 predicted gene 29642 ncRNA 546009 Gm5904 EG546009 - 7|7 F3 predicted gene 5904 pseudo 105242979 XR_882236 Gm39039 - - 7 D2|7 predicted gene, 39039 ncRNA 233410 Mm.29525 NM_178707 ENSMUSG00000005621 Zfp592 A730014M16Rik|Znf592 - 7|7 D3 zinc finger protein 592 protein-coding 670857 Mm.480249 NM_001166758 ENSMUSG00000095931 Vmn1r159 Gm16507 - 7|7 A3 vomeronasal 1 receptor 159 protein-coding 61057 D5Mit294 - - 5 9.83 cM DNA segment, Chr 5, Massachusetts Institute of Technology 294 unknown 74248 Mm.261199 2310003L06Rik - - 5|5 E1 RIKEN cDNA 2310003L06 gene protein-coding 102636953 Gm33882 - - 7 E1|7 predicted gene, 33882 pseudo 75630 Mm.392786 NR_045979 ENSMUSG00000101801 1700020G17Rik 4930480D05Rik - 10|10 D1 RIKEN cDNA 1700020G17 gene ncRNA 75614 Mm.440235 NR_045289 ENSMUSG00000093565 Rab26os 2610019E17Rik - 17|17 A3.3 RAB26, member RAS oncogene family, opposite strand ncRNA 622810 Gm6361 EG622810 - 15 B2|15 ubiquitin-conjugating enzyme E2 variant 2 pseudogene pseudo 100736249 Mm.294826 NR_045199 Mira - - 6 B3|6 mistral long non-coding RNA ncRNA 116827 Idd20 - - - insulin dependent diabetes susceptibility 20 unknown 668132 Gm8992 EG668132 - 6|6 C2 solute carrier family 25, member 39 pseudogene pseudo 238330 Mm.248358 NM_145836 ENSMUSG00000034168 Irf2bpl 6430527G18Rik|Eap1 - 12|12 D2 interferon regulatory factor 2 binding protein-like protein-coding 102636362 XR_378038 Gm33449 - - 6 F3|6 predicted gene, 33449 ncRNA 28254 Mm.38953 NM_023718 ENSMUSG00000079262 Slco1a6 4930422F19Rik|AI790453|Oatp-5|Oatp5|Slc21a13 - 6|6 G2 solute carrier organic anion transporter family, member 1a6 protein-coding 102631646 XR_880167 Gm29933 - - 11 D|11 predicted gene, 29933 ncRNA 103745 Mm.287807 AI464234 - - - expressed sequence AI464234 unknown 100417506 Gm16123 Hspd1-11p - 6|6 A1 heat shock protein 1 (chaperonin) pseudogene 11 pseudo 79059 Mm.430765 NM_019730 ENSMUSG00000073435 Nme3 1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3 - 17|17 A3.3 NME/NM23 nucleoside diphosphate kinase 3 protein-coding 102633972 Gm31669 - - 9|9 predicted gene, 31669 pseudo 13120 Mm.1840 NM_007823 ENSMUSG00000028713 Cyp4b1 - - 4 D1|4 53.06 cM cytochrome P450, family 4, subfamily b, polypeptide 1 protein-coding 93712 Mm.247203 NM_033587 ENSMUSG00000103677 Pcdhga4 - - 18|18 B3 protocadherin gamma subfamily A, 4 protein-coding 75920 Mm.402088 4930588G17Rik - - 7|7 F2 RIKEN cDNA 4930588G17 gene protein-coding 382635 Gm5187 EG382635 - 12|12 F1 predicted gene 5187 pseudo 13194 Mm.289915 NM_015735 ENSMUSG00000024740 Ddb1 127kDa|AA408517|p127-Ddb1 - 19 A|19 6.66 cM damage specific DNA binding protein 1 protein-coding 631584 XR_001779559 Catspere1 Catspere|EG631584|Gm7068 - 1|1 H4 cation channel sperm associated auxiliary subunit epsilon 1 protein-coding 108168612 XM_017318819 LOC108168612 - - Y D Y-linked testis-specific protein 1-like protein-coding 215855 Mm.377237 NM_001010828 ENSMUSG00000045111 Taar6 Gm228|taR-6 - 10|10 A4 trace amine-associated receptor 6 protein-coding 20862 Mm.359610 NM_001082545 ENSMUSG00000022902 Stfa2 Stf2 - 16 B3|16 25.52 cM stefin A2 protein-coding 100502882 Gm19430 - - 1 B|1 13.34 cM uncharacterized protein C19orf29 homolog pseudo 21810 Mm.14455 NM_009369 ENSMUSG00000035493 Tgfbi 68kDa|AI181842|AI747162|Beta-ig|big-h3 - 13 B1|13 30.09 cM transforming growth factor, beta induced protein-coding 100151689 Gm17797 - - 6|6 D1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 20438 Mm.37215 NM_009173 ENSMUSG00000040749 Siah1b AA960570|Sinh1b|siah-1b - X F5|X 76.11 cM siah E3 ubiquitin protein ligase 1B protein-coding 102638977 XR_376175 Gm35409 Gm43861 - 3 H2|3 predicted gene, 35409 ncRNA 100035844 W10q6 - - - weight 10 weeks QTL 6 unknown 108168538 XM_017318725 LOC108168538 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 73340 Mm.38438 NM_030689 ENSMUSG00000022421 Nptxr 1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd - 15 E1|15 37.85 cM neuronal pentraxin receptor protein-coding 385328 Mm.275681 NM_001034100 ENSMUSG00000078346 H2al1n EG385328|Gm5382 - X|X A1.1 H2A histone family member L1N protein-coding 102642420 Mm.392823 LOC102642420 - - - uncharacterized LOC102642420 ncRNA 112173 Daq8 - - - directional asymmetry QTL 8 unknown 105244971 XR_870325 Gm40489 - - 8 A4|8 predicted gene, 40489 ncRNA 61631 D8Mit246 - - 8|8 DNA segment, Chr 8, Massachusetts Institute of Technology 246 unknown 105246515 XR_877620 Gm41796 - - 18 E3|18 predicted gene, 41796 ncRNA 62251 D18Mit34 - - - DNA segment, Chr 18, Massachusetts Institute of Technology 34 unknown 108168338 XR_001782180 Gm46594 - - 17 E4|17 predicted gene, 46594 ncRNA 108168194 XR_001781409 Gm46478 - - 14 E2.1|14 predicted gene, 46478 ncRNA 74973 Mm.141282 NR_040701 ENSMUSG00000106056 4930500L23Rik - - 5|5 G2 RIKEN cDNA 4930500L23 gene ncRNA 628994 Gm6937 EG628994 - 19|19 C3 ribosomal protein L15 pseudogene pseudo 100039227 Mm.428840 NM_001177538 ENSMUSG00000072675 Duxbl2 Gm10394 - 14 A3|14 double homeobox B-like 2 protein-coding 231736 XM_144574 Gm4868 EG231736 - 5|5 G1.1 predicted gene 4868 protein-coding 26904 Mm.57009 NM_012009 ENSMUSG00000102418 Sh2d1b1 EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b - 1|1 H3 SH2 domain containing 1B1 protein-coding 18019 Mm.116802 NM_010899 ENSMUSG00000027544 Nfatc2 AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp - 2 H3|2 88.91 cM nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 protein-coding 435963 Gm5732 EG435963 - 7|7 B1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 258483 Mm.271573 NM_146490 ENSMUSG00000062497 Olfr1411 MOR208-3 - 1|1 D olfactory receptor 1411 protein-coding 105246760 XR_878689 Gm42002 - - 5 F|5 predicted gene, 42002 ncRNA 62459 D14Mit261 - - 14 30.51 cM DNA Segment, Chr 14 Massachusetts Institute of Technology 261 unknown 100418191 Gm19065 - - 6|6 F3 membrane bound O-acyltransferase domain containing 2 pseudogene pseudo 16291 In(5)30Rk-p In(5)30Rk|In30Rk - - inversion, Chr 5, Roderick 30, proximal other 102633384 Mm.446117 XR_382664 Gm31219 - - 13 C1|13 predicted gene, 31219 ncRNA 83997 Mm.36769 NM_032008 ENSMUSG00000021870 Slmap D330001L02Rik|Miranda|Slap|mKIAA1601 - 14|14 A3 sarcolemma associated protein protein-coding 100417676 Gm18757 - - 7|7 A1 predicted gene, 18757 pseudo 103917 Sagg - - - saggy protein-coding 170656 Mm.46109 NM_028621 ENSMUSG00000058368 Krtap21-1 1110017B05Rik|AI506979|KAP21.1|Krtap16-7 - 16|16 C3.3 keratin associated protein 21-1 protein-coding 111623 Tcra-V15 - - - T cell receptor alpha, variable 15 other 117218 Ap2q - - 2 34.9 cM alcohol preference 2 QTL unknown 214572 Mm.251804 NM_145404 ENSMUSG00000060098 Prmt7 4933402B05Rik|BC006705 - 8|8 D3 protein arginine N-methyltransferase 7 protein-coding 100009600 Mm.483362 NM_001103168 ENSMUSG00000079681 Zglp1 Glp1 - 9|9 A3 zinc finger, GATA-like protein 1 protein-coding 105246127 Gm41467 - - 16 B3|16 predicted gene, 41467 pseudo 100415915 Mm.387180 NR_045765 ENSMUSG00000085112 A530072M11Rik - - 4 A2|4 RIKEN cDNA gene A530072M11 ncRNA 276714 389D19.R - - - DNA segment, 389D19.R unknown 105246691 XR_878467 Gm41939 - - 1 E2.3|1 predicted gene, 41939 ncRNA 665319 Gm7583 - - 7|7 C-D1 predicted gene 7583 pseudo 102631881 Gm42744 Gm30103 - 5|5 predicted gene 42744 ncRNA 105245784 Mm.390686 XR_874713 ENSMUSG00000114693 Gm41177 - - 14 D1|14 predicted gene, 41177 ncRNA 69263 Mm.12553 NM_027009 ENSMUSG00000033970 Rfc3 2810416I22Rik|38kDa|AU022547|Recc3 - 5|5 G3 replication factor C (activator 1) 3 protein-coding 100042680 Gm3961 - - 6 G2|6 predicted gene 3961 unknown 102635882 XR_390562 Gm33106 - - 4 B1|4 predicted gene, 33106 ncRNA 329738 Mm.72322 NM_177859 ENSMUSG00000049565 Aknad1 4921525H12Rik - 3|3 F3 AKNA domain containing 1 protein-coding 73863 Mm.66894 NM_001201322 ENSMUSG00000022993 4930415O20Rik - - 15|15 F1 RIKEN cDNA 4930415O20 gene protein-coding 432987 Mm.450174 NM_001004170 ENSMUSG00000095241 Gm5478 EG432987 - 15 F2|15 predicted pseudogene 5478 pseudo 242248 Mm.30832 NM_001033350 ENSMUSG00000037922 Bank1 A530094C12Rik|AI451642|AVIEF|BANK - 3 G3|3 63.04 cM B cell scaffold protein with ankyrin repeats 1 protein-coding 545912 Zscan4-ps1 EG545912 - 7|7 A1 zinc finger and SCAN domain containing 4, pseudogene 1 pseudo 102633362 XR_386410 Gm31206 - - 18 E3|18 predicted gene, 31206 ncRNA 13286 Del(14)46H Del46H - - deletion, Chr 14, Harwell 46 other 64242 Mm.41395 NM_022414 ENSMUSG00000021032 Ngb - - 12|12 D2 neuroglobin protein-coding 14121 Mm.423078 NM_019395 ENSMUSG00000069805 Fbp1 Fbp-2|Fbp2|Fbp3 - 13|13 B3 fructose bisphosphatase 1 protein-coding 665038 Vmn2r-ps61 EG665038|Gm7458 - 7 C|7 vomeronasal 2, receptor, pseudogene 61 pseudo 667242 Mup-ps11 Gm13516 - 4|4 B3 major urinary protein, pseudogene 11 pseudo 14420 Mm.5120 NM_008079 ENSMUSG00000021003 Galc 2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher - 12 E|12 49.83 cM galactosylceramidase protein-coding 100043171 Mm.417748 Gm4279 - - 16 A1|16 predicted gene 4279 protein-coding 211064 Mm.486235 NM_001102565 ENSMUSG00000079036 Alkbh1 2700073G19Rik|Abh|Alkbh|alkB|hABH - 12|12 D2 alkB homolog 1, histone H2A dioxygenase protein-coding 100417122 Gm18407 - - 1|1 H2.3 translin-associated factor X pseudogene pseudo 666452 Gm12097 - - 11|11 A4 predicted gene 12097 pseudo 105244103 XR_866072 Gm39776 - - 2 A3|2 predicted gene, 39776 ncRNA 105243927 Mm.159035 XR_865433 1700126A01Rik - - 1|1 C1.3 RIKEN cDNA 1700126A01 gene ncRNA 51796 Mm.1963 NM_016799 ENSMUSG00000028809 Srrm1 AA407769|POP101|Srm160 - 4|4 D3 serine/arginine repetitive matrix 1 protein-coding 108168968 Gm46863 - - 4 C5|4 predicted gene, 46863 pseudo 108282 Psme2-ps2 - - - protease (prosome, macropain) 28 subunit, beta, b, pseudogene 2 pseudo 78725 Mm.171357 NM_172433 ENSMUSG00000101026 D730001G18Rik Ly6g6g - 15|15 D3 RIKEN cDNA D730001G18 gene ncRNA 102633504 Mm.261785 XR_387657 ENSMUSG00000106938 Gm31314 - - 5 F|5 predicted gene, 31314 ncRNA 108168311 XR_001782022 Gm46571 - - 16 B4|16 predicted gene, 46571 ncRNA 100038623 Mm.387135 NR_033475 Gm10823 - - 16 B2|16 predicted gene 10823 ncRNA 17921 Mm.1403 NM_008663 ENSMUSG00000030761 Myo7a Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1 - 7 E1|7 53.57 cM myosin VIIA protein-coding 381983 Mm.44928 NM_001005511 ENSMUSG00000062044 Lmtk3 BC059845|aatyk3 - 7|7 B3 lemur tyrosine kinase 3 protein-coding 111496 Xmmv71 Mmv-71|Xmmv-71 - - xenotropic-MCF leukemia virus 71 other 100035227 Bodw3 - - - body weight 3 unknown 78324 2900002M20Rik - - 1|1 RIKEN cDNA 2900002M20 gene protein-coding 100034998 Pltct1 - - - platelet count 1 unknown 102640284 XR_374619 Gm36393 - - 2 C2|2 predicted gene, 36393 ncRNA 110258 Hh3 Hh-3 - - hemopoietic histocompatibility 3 protein-coding 105243197 XR_870474 Gm39184 - - 8 B3.1|8 predicted gene, 39184 ncRNA 384113 Gm5287 EG384113 - 4|4 C3 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member pseudogene pseudo 442798 Mm.119480 NM_001002768 9630041A04Rik - - 9|9 F1 RIKEN cDNA 9630041A04 gene unknown 217887 Mm.186678 NM_145450 ENSMUSG00000037594 BC022687 AW050009|C130001I08Rik|Clba1|Flj20080 - 12 F1|12 61.2 cM cDNA sequence BC022687 protein-coding 75843 4930564B12Rik - - 12|12 RIKEN cDNA 4930564B12 gene protein-coding 381218 Mm.280653 NM_198651 ENSMUSG00000064202 4430402I18Rik AW122618|Spata6l - 19|19 C1 RIKEN cDNA 4430402I18 gene protein-coding 108155 Mm.487332 NM_139144 ENSMUSG00000034160 Ogt 1110038P24Rik|4831420N21Rik|AI115525|Ogtl - X|X D O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) protein-coding 246196 Mm.26852 NM_172575 ENSMUSG00000055917 Zfp277 2410017E24Rik|NIRF4 - 12|12 B1 zinc finger protein 277 protein-coding 74881 Mm.410819 NR_110448 ENSMUSG00000112762 4930459C07Rik - - 10|10 C3 RIKEN cDNA 4930459C07 gene ncRNA 108168193 Gm46477 - - 14 E2.1|14 60S ribosomal protein L27 pseudogene pseudo 442809 Mm.444779 NM_001002775 4932416K20Rik - - 8|8 D3 RIKEN cDNA 4932416K20 gene ncRNA 105242562 XR_868688 Gm38739 - - 5 G2|5 predicted gene, 38739 ncRNA 15405 Mm.4694 NM_010456 ENSMUSG00000038227 Hoxa9 D6a9|Hox-1.7 - 6 B3|6 25.4 cM homeobox A9 protein-coding 108610 Iap3rc22 - - - intracisternal A-type particle, U3 region, SINE repeat c-22 other 18000 Mm.428652 NM_010891 ENSMUSG00000026276 Sept2 AW208991|Nedd-5|Nedd5|mKIAA0158 - 1|1 D septin 2 protein-coding 105242482 LOC105242482 - - - C-C motif chemokine 12 protein-coding 27637 D13Die28 - - 13 53.05 cM DNA segment, Chr 13, Dietrich 28 unknown 100504400 Mm.373409 NM_001191032 ENSMUSG00000095240 Cypt14 - - X|X A3.3 cysteine-rich perinuclear theca 14 protein-coding 13627 Mm.138471 NM_010106 ENSMUSG00000037742 Eef1a1 - - 9|9 E1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 76670 Mm.159759 NM_029698 ENSMUSG00000039543 Cfap70 Ttc18 - 14|14 A3 cilia and flagella associated protein 70 protein-coding 16564 Mm.41379 NM_016705 ENSMUSG00000022629 Kif21a - - 15 E3|15 45.86 cM kinesin family member 21A protein-coding 61458 D6Mit183 - - 6 25.82 cM DNA segment, Chr 6, Massachusetts Institute of Technology 183 unknown 626327 Gm6665 EG626327 - 18|18 B1 glutathione S-transferase, mu 2 pseudogene pseudo 11697 am - - - amputated unknown 382844 Rpl19-ps4 EG382844|Gm5202 - 14|14 A1 ribosomal protein L19, pseudogene 4 pseudo 111518 Cea - - - carcinoembryonic antigen gene family other 107623 Pgame1 Pgam1e|Pgam1e1 - - phosphoglycerate mutase elevated 1 protein-coding 108169202 XR_001785453 Gm46989 - - 6 B1|6 predicted gene, 46989 ncRNA 21224 T(5;7)50Ad T50Ad - - reciprocal translocation, Chr 5 and 7, Adler 50 other 110338 Anth2 Anth-2 - - resistance to Bacillus anthracis 2 protein-coding 105245841 Mm.406746 XR_874890 ENSMUSG00000115580 Gm41230 - - 14 E2.2|14 predicted gene, 41230 ncRNA 71611 9130022K11Rik - - 11|11 RIKEN cDNA 9130022K11 gene protein-coding 102467361 n-TFgaa2 n-Tf2 - 19 A|19 nuclear encoded tRNA pheylalanine 2 (anticodon GAA) tRNA 107751 Mm.119274 NM_001001796 ENSMUSG00000041730 Prrxl1 Drg11|Drgx - 14|14 B paired related homeobox protein-like 1 protein-coding 102632539 Astx1b Gm14953 - X|X 49.81 cM amplified spermatogenic transcripts X encoded 1B protein-coding 100042100 Mm.396155 XR_874178 Gm3667 - - 14 A1|14 predicted gene 3667 protein-coding 100039795 Mm.101743 NM_001164528 ENSMUSG00000040612 Ildr2 2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|Ll - 1 H2.3|1 73.61 cM immunoglobulin-like domain containing receptor 2 protein-coding 102638999 LOC102638999 - - 1 C4 60S ribosomal protein L17 pseudogene pseudo 106049965 Sbe3 ECR3 - - Shh brain enhancer 3 biological-region 72934 2900006G07Rik - - 16|16 RIKEN cDNA 2900006G07 gene protein-coding 100534379 Gm21048 - - 5|5 G3 soc-2 (suppressor of clear) homolog pseudogene pseudo 13463 Dp(18)4H Dp4H - - duplication, Chr 18, Harwell 4 other 105245566 Mm.401912 LOC105245566 - - - uncharacterized LOC105245566 ncRNA 105246491 XR_877560 Gm41776 - - 18 E3|18 predicted gene, 41776 ncRNA 54652 Mm.289647 NM_019582 ENSMUSG00000031142 Cacna1f A930034B14|Cav1.4|Sfc17|nerg1|nob2 - X A1.1|X 3.42 cM calcium channel, voltage-dependent, alpha 1F subunit protein-coding 622019 Mm.246123 NM_001277919 Gm11780 - - 4|4 A1 predicted gene 11780 protein-coding 93695 Mm.302602 NM_053110 ENSMUSG00000029816 Gpnmb DC-HIL|Dchil|ipd - 6 B2.3|6 23.82 cM glycoprotein (transmembrane) nmb protein-coding 93760 Mm.22478 NM_001080819 ENSMUSG00000007880 Arid1a 1110030E03Rik|BAF250a|Osa1|Smarcf1 - 4|4 D2.3 AT rich interactive domain 1A (SWI-like) protein-coding 102634346 XR_383265 Gm31951 - - 14 A3|14 predicted gene, 31951 ncRNA 105242633 Gm38792 - - 6|6 predicted gene, 38792 ncRNA 100416838 Gm12327 - - 11|11 B4 zinc finger protein 735 pseudogene pseudo 107143 AI314034 - - - expressed sequence AI314034 unknown 75097 Mm.50414 NM_001081661 ENSMUSG00000047079 Ube2dnl2 4930524E20Rik - X|X E1 ubiquitin-conjugating enzyme E2D N-terminal like 2 protein-coding 225865 Mm.87321 NM_139301 ENSMUSG00000038498 Catsper1 Catsper|KSper - 19|19 A cation channel, sperm associated 1 protein-coding 629997 Gm7022 EG629997 - X|X A3.1 predicted gene 7022 pseudo 631097 Gm7054 - - 13 D1|13 establishment of cohesion 1 homolog 1 pseudogene pseudo 99229 AU041474 - - - expressed sequence AU041474 protein-coding 102633742 XR_384988 Gm31495 - - 16 C3.1|16 predicted gene, 31495 ncRNA 329831 Mm.454466 NM_177377 ENSMUSG00000042788 Fam166b 4833436C18Rik - 4|4 A5 family with sequence similarity 166, member B protein-coding 52105 D1Ertd164e - - 1 1.79 cM DNA segment, Chr 1, ERATO Doi 164, expressed unknown 240660 Mm.262085 NM_175507 ENSMUSG00000044026 Slc35g1 AA590464|D330039I19Rik|Tmem20 - 19|19 C3 solute carrier family 35, member G1 protein-coding 75487 Mm.396170 XR_868793 1700012J15Rik Gm44217 - 6|6 A1 RIKEN cDNA 1700012J15 gene ncRNA 19573 Rb(5.15)3Bnr Rb3Bnr - - Robertsonian translocation, Chr 5 and 15, Universitat Bonn/Rhein 3 other 98123 C85771 - - - expressed sequence C85771 unknown 96872 C77651 - - - expressed sequence C77651 protein-coding 102634746 XM_006539348 Gm13201 - - 4 E2|4 78.67 cM predicted gene 13201 protein-coding 270665 Gm5060 EG270665 - X|X F3 high mobility group box 3 pseudogene pseudo 319859 Mm.259909 NM_177020 E030011O05Rik - - 9|9 E3.3 RIKEN cDNA E030011O05 gene ncRNA 13041 Mm.113590 NM_009985 ENSMUSG00000024910 Ctsw lymphopain - 19|19 A cathepsin W protein-coding 100503819 Gm12454 - - 4|4 23.05 cM predicted gene 12454 ncRNA 102638394 Gm34971 - - 9|9 predicted gene, 34971 ncRNA 98029 C81557 - - - expressed sequence C81557 unknown 77068 Mm.436825 5930436O19Rik - - 17|17 E4 RIKEN cDNA 5930436O19 gene protein-coding 102467481 n-TDgtc4 n-Td4 - 1 H3|1 nuclear encoded tRNA aspartic acid 4 (anticodon GTC) tRNA 62137 D13Mit69 - - 13 43.79 cM DNA segment, Chr 13, Massachusetts Institute of Technology 69 unknown 53945 Mm.28756 NM_016917 ENSMUSG00000025993 Slc40a1 Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1 - 1|1 C1.1 solute carrier family 40 (iron-regulated transporter), member 1 protein-coding 665450 Gm7638 EG665450 - 16|16 A1 predicted gene 7638 pseudo 626652 Gm6693 EG626652 - 1|1 E2.1 AMME chromosomal region gene 1-like pseudogene pseudo 211027 Trav3-4 A730076H11Rik|Gm28|Gm79 - 14|14 C2 T cell receptor alpha variable 3-4 other 77043 Mm.333548 NM_029849 4632433K11Rik AW049395 - 7|7 A1 RIKEN cDNA 4632433K11 gene unknown 74718 Mm.440548 NM_029068 ENSMUSG00000027534 Snx16 4930522N22Rik|AI117577|AI747675 - 3|3 A1 sorting nexin 16 protein-coding 17850 Mm.259884 NM_008650 ENSMUSG00000023921 Mut D230010K02Rik|Mcm - 17 B2|17 19.55 cM methylmalonyl-Coenzyme A mutase protein-coding 69295 Mm.396150 NR_126544 ENSMUSG00000084984 Far1os 1700006P19Rik - 7|7 F1 fatty acyl CoA reductase 1, opposite strand ncRNA 12616 Mm.440169 NM_007682 ENSMUSG00000068267 Cenpb CENP-B - 2 F1|2 63.29 cM centromere protein B protein-coding 52774 D4Bwg23e - - - DNA segment, Chr 4, Brigham & Women's Genetics-23 expressed unknown 108168471 LOC108168471 - - X C3 60S ribosomal protein L37 pseudogene pseudo 18563 Mm.1845 NM_008797 ENSMUSG00000024892 Pcx Pc|Pcb - 19 A|19 4.07 cM pyruvate carboxylase protein-coding 102636236 XR_375301 Gm33359 - - 2 H3|2 predicted gene, 33359 ncRNA 102633051 XR_383356 Gm30969 - - 14 B|14 predicted gene, 30969 ncRNA 21034 T(10;12)10Rl T10Rl - - reciprocal translocation, Chr 10 and 12, Russell 10 other 380705 Mm.490673 NM_001033433 ENSMUSG00000089876 Tmem102 4632403M07Rik|Cbap|Tmem102-ps - 11|11 B3 transmembrane protein 102 protein-coding 73279 1700023B13Rik - - 17|17 RIKEN cDNA 1700023B13 gene protein-coding 78182 4930520M14Rik - - 5|5 RIKEN cDNA 4930520M14 gene protein-coding 117197 Mm.46744 NM_133724 ENSMUSG00000060708 Bloc1s4 2610101N07Rik|Blos4|Cno - 5|5 B3 biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino protein-coding 102465586 NR_105936 ENSMUSG00000098460 Mir6970 Gm27589|mmu-mir-6970 - 17|17 B1 microRNA 6970 ncRNA 110233 Igh-Ns4 - - - immunoglobulin heavy chain Ns4 other 108243 Dppa5-ps3 Esg1-ps3|esg-1 - - developmental pluripotency associated 5, pseudogene 3 pseudo 210741 Mm.312046 NM_199251 ENSMUSG00000050138 Kcnk12 mntk1 - 17|17 E4 potassium channel, subfamily K, member 12 protein-coding 13655 Mm.103737 NM_018781 ENSMUSG00000033730 Egr3 Pilot - 14|14 D2 early growth response 3 protein-coding 100504524 XM_006500528 Cisd3b Gm20267 - 2 H2|2 83.85 cM CDGSH iron sulfur domain 3B protein-coding 21174 T(4;12)47H T47H - - reciprocal translocation, Chr 4 and 12, Harwell 47 other 52046 DXGgc6e - - - DNA segment, Chr X, G. Consalez 6, expressed unknown 71489 Mm.442482 NR_045875 ENSMUSG00000086199 Bcas3os1 8430403D17Rik - 11|11 C breast carcinoma amplified sequence 3, opposite strand 1 ncRNA 110468 Tcra-V8.4 - - - T cell receptor alpha, variable 8.4 other 105244748 XR_868424 Gm40304 Gm42747 - 5 C1|5 predicted gene, 40304 ncRNA 108168371 Gm46616 - - 18 A1|18 signal recognition particle 9 kDa protein pseudogene pseudo 51945 D1Ertd811e AU019756 - 1 59.98 cM DNA segment, Chr 1, ERATO Doi 811, expressed protein-coding 108168314 H2-Pb Gm46572|H-2Ab|H-2I|H-2Pb|H2-Ab|H2-Ab3|Ia7|Pb - 17 B1|17 histocompatibility 2, P region beta locus pseudo 108167720 XR_001779364 Gm46153 - - 9 C|9 predicted gene, 46153 ncRNA 111905 Iap3rc6 - - - intracisternal A-type particle, U3 region, SINE repeat c-6 other 100043090 Gm4222 - - 2 E1|2 predicted gene 4222 protein-coding 100417914 Gm15049 - - X|X F2 POU domain, class 5, transcription factor 1 pseudogene pseudo 102638402 XR_877174 Gm34979 - - 18 A1|18 predicted gene, 34979 ncRNA 26400 Mm.3906 NM_011944 ENSMUSG00000002948 Map2k7 5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2 - 8|8 A1.1 mitogen-activated protein kinase kinase 7 protein-coding 19659 Mm.279741 NM_011254 ENSMUSG00000046402 Rbp1 CRBPI|Crbp|Rbp-1 - 9 E3.3|9 51.36 cM retinol binding protein 1, cellular protein-coding 102633520 Gm31328 - - 17 E2|17 myeloma-overexpressed gene 2 protein homolog pseudo 100415944 LOC100415944 - - - vomeronasal 2, receptor 43 pseudogene pseudo 62186 D15Mit41 - - 15 53.99 cM DNA segment, Chr 15, Massachusetts Institute of Technology 41 unknown 258550 Mm.334988 NM_146557 ENSMUSG00000058491 Olfr869 MOR145-6 - 9|9 A3 olfactory receptor 869 protein-coding 76602 Mm.87305 NR_152121 ENSMUSG00000097515 1700040D17Rik - - 3|3 F2.1 RIKEN cDNA 1700040D17 gene ncRNA 62190 D15Mit57 - - 15 14.54 cM DNA segment, Chr 15, Massachusetts Institute of Technology 57 unknown 72822 Mm.458554 2810455O05Rik - - 8|8 RIKEN cDNA 2810455O05 gene unknown 70296 Mm.19172 NM_146252 ENSMUSG00000039678 Tbc1d13 2600014A06Rik|BC025586 - 2|2 B TBC1 domain family, member 13 protein-coding 11677 Mm.451 NM_009658 ENSMUSG00000001642 Akr1b3 ALR2|AR|Ahr-1|Ahr1|Akr1b1|Aldor1|Aldr1 - 6 14.87 cM|6 B1 aldo-keto reductase family 1, member B3 (aldose reductase) protein-coding 21325 T(X;7)5Rl T5Rl - - reciprocal translocation, Chr X and 7, Russell 5 other 59052 Mm.29122 NM_021554 ENSMUSG00000030876 Mettl9 0610012D09Rik|AA517660|Drev|MNCb-5680 - 7|7 F2 methyltransferase like 9 protein-coding 22022 Mm.250631 NM_009419 ENSMUSG00000029344 Tpst2 AI448750|D5Ucla3|Tango13b|grm|grt - 5 F|5 54.65 cM protein-tyrosine sulfotransferase 2 protein-coding 100312986 Mm.437659 NM_001167673 ENSMUSG00000090738 Gm17727 Pate-e|Pate7 - 9 A4|9 20.44 cM predicted gene, 17727 protein-coding 111228 Ppib-rs1 Cphn2-rs1 - - peptidylprolyl isomerase B, related sequence 1 pseudo 399633 Mm.439892 A630014C17Rik - - - RIKEN cDNA A630014C17 gene ncRNA 20331 seb - - - seborrheic dermatitis unknown 100416434 Gm18109 - - X|X A1.2 Kruppel-like factor 17 pseudogene pseudo 98106 C77298 - - - expressed sequence C77298 unknown 100504255 Mm.123608 NR_045100 ENSMUSG00000084773 Gm12159 - - 11 B1.1|11 27.39 cM predicted gene 12159 ncRNA 100039715 Gm14550 - - X|X A3.3 predicted gene 14550 pseudo 68354 Mm.46194 NR_037995 Plekhd1os 0610009B14Rik - 12|12 C3 pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand ncRNA 102634779 XR_001779260 Gm32281 - - 9 E3.3|9 predicted gene, 32281 ncRNA 77352 Mm.428709 NM_001033180 ENSMUSG00000026601 Axdnd1 9430070O13Rik|Gm979 - 1|1 G3 axonemal dynein light chain domain containing 1 protein-coding 105244934 Gm40456 - - 7|7 predicted gene, 40456 ncRNA 105245634 XR_873962 Gm41062 - - 13 D2.2|13 predicted gene, 41062 ncRNA 625716 Mm.295865 NM_001081318 ENSMUSG00000079263 Gm6614 EG625716 - 6|6 G2 predicted gene 6614 protein-coding 105246434 Mm.406254 XR_001782505 Gm41724 - - 18 D1|18 predicted gene, 41724 ncRNA 61535 D8Mit201 - - 8 69.04 cM DNA segment, Chr 8, Massachusetts Institute of Technology 201 unknown 22346 Mm.29407 NM_009507 ENSMUSG00000033933 Vhl Vhlh - 6 E3|6 52.81 cM von Hippel-Lindau tumor suppressor protein-coding 383509 Gm5254 EG383509 - 1|1 C1.3 lactate dehydrogenase A pseudogene pseudo 435830 Gm5714 EG435830 - 5|5 A1 predicted gene 5714 pseudo 78630 Mm.71125 1700089I07Rik - - 2|2 RIKEN cDNA 1700089I07 gene protein-coding 102637901 XR_870339 Gm34597 Gm45468 - 8 A4|8 predicted gene, 34597 ncRNA 11438 Mm.252369 NM_015730 ENSMUSG00000027577 Chrna4 Acra-4|Acra4|EBN1|ENFL1 - 2 H4|2 103.54 cM cholinergic receptor, nicotinic, alpha polypeptide 4 protein-coding 110408 Dxcp1 Dcp-1|Dcp1 - - dexamethasone induced cleft palate 1 protein-coding 14536 Mm.439703 NM_010264 ENSMUSG00000063972 Nr6a1 1700113M01Rik|Gcnf|NCNF|RTR - 2|2 B nuclear receptor subfamily 6, group A, member 1 protein-coding 100036276 Arigg1 - - - anti-RBC IgG antibodies 1 unknown 102639963 XR_385718 Gm36152 - - 17 E1.1|17 predicted gene, 36152 ncRNA 105246164 XR_876260 Gm41498 - - 16 C4|16 predicted gene, 41498 ncRNA 116628 Cafq3 - - 9 31.71 cM caffeine metabolism QTL 3 unknown 546767 Gm13735 - - 2|2 D Max interacting protein 1 pseudogene pseudo 100040519 Mrpl23-ps1 Gm13671 - 2|2 C3 mitichondrial ribosomal protein L23, pseudogene 1 pseudo 105246226 XR_876649 Gm41538 - - 17 A3.2|17 predicted gene, 41538 ncRNA 27225 Mm.3935 NM_020494 ENSMUSG00000041645 Ddx24 1700055J08Rik|2510027P10Rik|AI649272 - 12|12 E DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 protein-coding 100504229 Mm.355162 A530017D24Rik AI854151 - 11|11 RIKEN cDNA A530017D24 gene unknown 245405 NM_001085510 Gm4987 EG245405 - X|X A4 ribosomal protein L32 pseudogene pseudo 102638042 XR_388833 Gm34704 - - 11 B4|11 predicted gene, 34704 ncRNA 330052 Mm.459265 NR_027362 ENSMUSG00000105076 A930003O13Rik - - 5|5 A3 RIKEN cDNA A930003O13 gene ncRNA 675190 Vmn2r-ps91 - - 8|8 B3.3 vomeronasal 2, receptor, pseudogene 91 pseudo 100035582 Vgot1 - - - vaginal opening timing 1 unknown 102466153 NR_105784 ENSMUSG00000099214 Mir6365 Gm27683|mmu-mir-6365 - 16|16 A1 microRNA 6365 ncRNA 62042 D6Mit388 - - 6 45.43 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 388 unknown 76935 1810065K23Rik - - - RIKEN cDNA 1810065K23 gene protein-coding 19671 Mm.391143 NM_023131 ENSMUSG00000024889 Rce1 D19Ertd283e|D19Ertd98e - 19|19 A Ras converting CAAX endopeptidase 1 protein-coding 15529 Mm.234266 NM_008304 ENSMUSG00000022261 Sdc2 4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2 - 15 B3.1|15 13.74 cM syndecan 2 protein-coding 53006 L22T7 - - - DNA segment, L22T7 unknown 102633048 XR_382856 Gm30967 - - 13 D1|13 predicted gene, 30967 ncRNA 620419 Mm.460423 NM_001200023 ENSMUSG00000092260 Zfp963 - - 8|8 B3.3 zinc finger protein 963 protein-coding 235047 Mm.290849 NM_172763 ENSMUSG00000057982 Zfp809 BB114266|C330026E23 - 9|9 A3 zinc finger protein 809 protein-coding 171218 Pcpila1 - - - PCP induced locomotor activity 1 unknown 71458 Mm.196328 NM_029510 ENSMUSG00000040363 Bcor 2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575 - X|X A1.1 BCL6 interacting corepressor protein-coding 102634098 LOC102634098 - - 2 C1.3 U1 small nuclear ribonucleoprotein C pseudogene pseudo 404397 Olfr511-ps1 GA_x5J8B7W5M25-134931-135139 - 7|7 E3 olfactory receptor 511, pseudogene 1 pseudo 108502 Mintf - - - Moloney MuLV integration site, EC cells, f other 100503047 XM_003085585 LOC100503047 - - 12 D2 eukaryotic translation initiation factor 1A, X-chromosomal-like protein-coding 56612 Mm.158264 NM_020031 ENSMUSG00000001289 Pfdn5 1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1 - 15 F3|15 57.48 cM prefoldin 5 protein-coding 105246554 XR_877789 Gm41828 - - 19 C1|19 predicted gene, 41828 ncRNA 100035515 Chldq5 - - - cholesterol and HDL QTL 5 unknown 17160 Mm.761 NM_008550 ENSMUSG00000029119 Man2b2 mKIAA0935 - 5|5 B3 mannosidase 2, alpha B2 protein-coding 207933 Gm13502 - - 2|2 C1.1 predicted gene 13502 pseudo 100041365 Gm3292 - - 17|17 A2 predicted gene 3292 pseudo 100034894 Alcw6 - - 8 18.89 cM alcohol withdrawal 6 unknown 100035086 Tailaq4 Tlaq4 - - tail length adjusted QTL 4 unknown 100042472 Gm10600 Gm10599 - 4|4 A5 predicted gene 10600 pseudo 66333 Mm.29756 NM_175105 ENSMUSG00000042797 Aqp11 1700015P13Rik|AI648923|sjds - 7|7 E1 aquaporin 11 protein-coding 233813 Mm.389939 NM_177697 ENSMUSG00000030889 Vwa3a E030013G06Rik - 7|7 F2 von Willebrand factor A domain containing 3A protein-coding 102633350 Gm31196 - - 15|15 predicted gene, 31196 ncRNA 61732 D5Mit255 - - 5 30.52 cM DNA segment, Chr 5, Massachusetts Institute of Technology 255 unknown 723868 NR_029961 ENSMUSG00000065575 Mir449a Mirn449|Mirn449a|mir-449a|mmu-mir-449 - 13|13 D2.2 microRNA 449a ncRNA 105245219 XR_871845 Gm40703 - - 10 C1|10 predicted gene, 40703 ncRNA 623706 Gm13651 Gm1834 - 2|2 C3 phosphoribosyl pyrophosphate synthetase-associated protein 2 pseudogene pseudo 100217453 NR_028548 ENSMUSG00000094411 Snord16a MBII-98 - 9 C|9 small nucleolar RNA, C/D box 16A snoRNA 110120421 LOC110120421 - - - VISTA enhancer mm1046 biological-region 100040333 Gm2719 - - 6 B1|6 protein tyrosine phosphatase domain containing 1 pseudogene pseudo 100416389 Gm18093 - - 15|15 B1 predicted gene, 18093 pseudo 102633185 XR_384366 Gm31075 - - 15 E3|15 predicted gene, 31075 ncRNA 18749 Mm.16766 NM_011100 ENSMUSG00000005034 Prkacb CbPKA|Pkacb - 3|3 H2 protein kinase, cAMP dependent, catalytic, beta protein-coding 105244172 XR_879875 Gm39826 - - 11 B1.3|11 predicted gene, 39826 ncRNA 100417297 Gm18513 - - 10|10 B3 crumbs homolog 1 pseudogene pseudo 544940 Gm5791 EG544940|Ppia-ps13_866.1 - 13|13 B3 peptidyl-prolyl cis-trans isomerase A pseudogene 13_866.1 pseudo 111531 Xmv17 Xmv-17 - - xenotropic murine leukemia virus 17 other 404527 Olfr1503-ps1 - - 19|19 A olfactory receptor 1503, pseudogene 1 pseudo 230770 Mm.257157 NM_199305 ENSMUSG00000053730 Tmem39b 6330509E05Rik|BC037095 - 4|4 D2.2 transmembrane protein 39b protein-coding 105246495 Gm41780 - - 18 B1|18 predicted gene, 41780 pseudo 329003 Mm.326526 NM_183033 ENSMUSG00000058881 Zfp516 C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222 - 18|18 E3 zinc finger protein 516 protein-coding 100039588 Gm12980 - - 4|4 D2.2 predicted gene 12980 pseudo 619293 Mm.387061 NM_001033798 ENSMUSG00000072982 9230009I02Rik - - 11|11 B1.3 RIKEN cDNA 9230009I02 gene ncRNA 320462 Mm.368273 B930098A02Rik - - 5|5 RIKEN cDNA B930098A02 gene protein-coding 245683 Mm.295846 NM_001081667 ENSMUSG00000047485 Klhl34 Gm388 - X|X F4 kelch-like 34 protein-coding 103579 AA517833 - - - expressed sequence AA517833 unknown 100125269 Vmn2r-ps127 - - 17 A3.2|17 vomeronasal 2, receptor, pseudogene 127 pseudo 252870 Mm.295330 NM_001003918 ENSMUSG00000022710 Usp7 2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp - 16|16 A1 ubiquitin specific peptidase 7 protein-coding 102634574 XR_383103 Gm32121 - - 14 A2|14 predicted gene, 32121 ncRNA 101867 Mm.231400 NM_025897 ENSMUSG00000030888 Rrp8 1500003O22Rik|2900001K19Rik|AW538116 - 7|7 E3 ribosomal RNA processing 8, methyltransferase, homolog (yeast) protein-coding 667729 Gm13668 Gm10821 - 2|2 C3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100035184 Ath28 - - - atherosclerosis 28 unknown 107376 Mm.245813 NR_026942 ENSMUSG00000053117 E330013P04Rik 9930018I18Rik|AW492152 - 19|19 D3 RIKEN cDNA E330013P04 gene ncRNA 61575 DXMit175 - - X 61.35 cM DNA segment, Chr X, Massachusetts Institute of Technology 175 unknown 62022 D4Mit325 - - 4 34.06 cM DNA segment, Chr 4, Massachusetts Institute of Technology 325 unknown 12067 Ube2n-ps1 1500026J17Rik|Benh-ps1 - 5 C3.3|5 40.68 cM ubiquitin-conjugating enzyme E2N, pseudogene 1 pseudo 102635915 XR_380543 Gm33130 - - 10 B5.3|10 predicted gene, 33130 ncRNA 105247204 XR_881561 Gm42343 - - 4 E1|4 predicted gene, 42343 ncRNA 102637768 Gm28107 - - Y|Y predicted gene 28107 protein-coding 17007 ltnr1 - - - lentinan responsive 1 unknown 100124551 Vmn2r-ps39 - - 7|7 A1 vomeronasal 2, receptor, pseudogene 39 pseudo 258201 Mm.376687 NM_001011867 ENSMUSG00000095901 Olfr538 MOR253-10P|MOR253-12P|MOR253-13P|Olfr1523-ps1|Olfr1553-ps1 - 7|7 F4 olfactory receptor 538 protein-coding 100503432 Gm19688 - - 10 C1|10 38.56 cM 60S ribosomal protein L23-like pseudo 108169073 Gm15921 - - 5 G1.3|5 68.88 cM 60S ribosomal protein L21 pseudogene pseudo 19116 Mm.10516 NM_011169 ENSMUSG00000005268 Prlr AI987712|Pr-1|Pr-3|Prlr-rs1 - 15 A1|15 5.23 cM prolactin receptor protein-coding 333639 Mm.371730 NM_001081354 ENSMUSG00000059401 Mamld1 G630014P10Rik - X|X A7.3 mastermind-like domain containing 1 protein-coding 112163563 AA415637 - - - expressed sequence AA415637 protein-coding 66568 Mm.263163 NM_025637 ENSMUSG00000028133 Rwdd3 2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1 - 3|3 G1 RWD domain containing 3 protein-coding 223604 Mm.386856 NM_001033876 ENSMUSG00000036760 Kcnk9 Task3 - 15|15 D3 potassium channel, subfamily K, member 9 protein-coding 666574 Gm13144 - - 4|4 E1 predicted gene 13144 pseudo 62859 D11Mit301 - - 11 75.93 cM DNA segment, Chr 11, Massachusetts Institute of Technology 301 unknown 73223 3110076C19Rik - - 15|15 RIKEN cDNA 3110076C19 gene protein-coding 102634667 XR_373752 Gm32199 - - 1 H4|1 predicted gene, 32199 ncRNA 319371 Mm.436865 NR_003293 ENSMUSG00000078700 D030028A08Rik - - 11|11 D RIKEN cDNA D030028A08 gene ncRNA 85084 DXMit71 - - X 78.63 cM DNA segment, Chr X, Massachusetts Institute of Technology 71 unknown 67281 Mm.10474 NM_026069 ENSMUSG00000041841 Rpl37 3110005M08Rik - 15|15 A1 ribosomal protein L37 protein-coding 102636663 XR_373686 Gm33668 - - 1 H2.3|1 predicted gene, 33668 ncRNA 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|D430007A19Rik|Znf608 - 18|18 D3 zinc finger protein 608 protein-coding 213438 Mm.265244 NM_175442 ENSMUSG00000054293 P2ry10b A630033H20Rik|AI662791|P2ry10 - X|X D purinergic receptor P2Y, G-protein coupled 10B protein-coding 100043048 Vmn1r-ps70 Gm4192 - 7|7 A3 vomeronasal 1 receptor, pseudogene 70 pseudo 270685 Mm.184752 NM_172308 ENSMUSG00000040675 Mthfd1l 2410004L15Rik|AI647056|Fthfsdc1 - 10|10 A1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 105245313 Gm40788 - - 10|10 predicted gene, 40788 ncRNA 102637820 XR_880408 Hopxos Gm15830 - 5 C3.3|5 41.45 cM HOP homeobox, opposite strand ncRNA 105244384 XR_867048 Gm40003 - - 2 H3|2 predicted gene, 40003 ncRNA 223666 Mm.322931 NM_198420 ENSMUSG00000033697 Arhgap39 9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2 - 15 D3|15 36.28 cM Rho GTPase activating protein 39 protein-coding 18949 Mm.22347 NM_008891 ENSMUSG00000020994 Pnn AU045199|D12Ertd512e - 12 C1|12 26.0 cM pinin protein-coding 73126 3110038A09Rik 3110040K14Rik|AV166053 - 18|18 RIKEN cDNA 3110038A09 gene protein-coding 223773 Mm.396622 NM_181412 ENSMUSG00000034333 Zbed4 1700009F06Rik - 15|15 E3 zinc finger, BED type containing 4 protein-coding 102638225 XR_375940 Gm34837 - - 3 F2.2|3 predicted gene, 34837 ncRNA 66749 4933406L23Rik Gm44035 - 6|6 RIKEN cDNA 4933406L23 gene protein-coding 70387 Mm.261082 NM_027412 ENSMUSG00000071660 Ttc9c 2210019E14Rik|6330408J23Rik - 19|19 A tetratricopeptide repeat domain 9C protein-coding 66813 Mm.474472 NM_025778 ENSMUSG00000030200 Bcl2l14 4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg - 6|6 G1 BCL2-like 14 (apoptosis facilitator) protein-coding 14367 Mm.150813 NM_022721 ENSMUSG00000045005 Fzd5 5330434N09Rik|AI427138|Fz-5|Fz5|mFz5 - 1 C2|1 32.74 cM frizzled class receptor 5 protein-coding 100043308 Trav14n-3 - - 14|14 C2 T cell receptor alpha variable 14N-3 other 102631944 Gm30146 - - 7|7 predicted gene, 30146 ncRNA 100504347 Mm.130500 NR_045052 ENSMUSG00000094002 Gm20187 - - 12 A2|12 9.85 cM predicted gene, 20187 ncRNA 100041621 Mm.458576 NM_001123372 ENSMUSG00000036552 Gm3435 - - 17|17 A2 predicted gene 3435 protein-coding 111056 Rrm2-ps4 - - - ribonucleotide reductase M2 pseudogene 4 pseudo 52398 Mm.394184 NM_001009818 ENSMUSG00000058013 Sept11 6230410I01Rik|AW548875|D5Ertd606e - 5 E2|5 47.29 cM septin 11 protein-coding 61405 D5Mit168 - - 5 76.15 cM DNA segment, Chr 5, Massachusetts Institute of Technology 168 unknown 53709 D13Mc1 D13McC1 - - DNA segment, Chr 13, McClelland 1 unknown 381835 Mm.297828 NM_001200041 ENSMUSG00000085272 Sbk3 Gm1078|Sgk110 - 7|7 A1 SH3 domain binding kinase family, member 3 protein-coding 74414 Mm.276043 NM_028925 ENSMUSG00000028099 Polr3c 4933407E01Rik|RPC3|RPC62 - 3|3 F2.1 polymerase (RNA) III (DNA directed) polypeptide C protein-coding 381534 Mm.318133 NM_001033773 ENSMUSG00000069733 Ube2u - - 4|4 C6 ubiquitin-conjugating enzyme E2U (putative) protein-coding 385317 Mm.108656 NM_029229 ENSMUSG00000048994 H2al3 4930557A04Rik - X|X A1.1 H2A histone family member L3 protein-coding 107296 AU022933 - - - expressed sequence AU022933 unknown 105245511 Gm40958 - - 13|13 predicted gene, 40958 ncRNA 105243656 Gm39492 - - 11|11 predicted gene, 39492 ncRNA 108168242 XR_001781699 Gm46517 - - 15 A1|15 predicted gene, 46517 ncRNA 109054 Mm.28808 NM_001013369 ENSMUSG00000052033 Pfdn4 0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4 - 2 H3|2 91.91 cM prefoldin 4 protein-coding 320784 Mm.474182 NR_131127 ENSMUSG00000112121 C230072F16Rik - - 17|17 E3 RIKEN cDNA C230072F16 gene ncRNA 116521 Obq8 - - - obesity QTL 8 unknown 108168495 XR_001782872 Gm46694 - - X A1.1|X predicted gene, 46694 ncRNA 239447 Mm.82400 NM_173422 ENSMUSG00000038591 Colec10 CL-L1 - 15 D1|15 21.15 cM collectin sub-family member 10 protein-coding 112072 Bpq3 - - 4 32.54 cM blood pressure QTL 3 unknown 668216 Gm9049 EG668216 - 10|10 D2 predicted gene 9049 pseudo 13303 Del(3)1Rn Del(3)?|Del? - - deletion, Chr 3, Rinchik 1 other 100038723 Mm.388565 Sox5it Gm10396 - - SRY (sex determining region Y)-box 5, intronic transcript protein-coding 12051 Mm.439658 NM_033601 ENSMUSG00000053175 Bcl3 AI528691|Bcl-3 - 7 A3|7 9.95 cM B cell leukemia/lymphoma 3 protein-coding 11610 Mm.46247 NM_009642 ENSMUSG00000029007 Agtrap 3300002E14Rik|AT1R|Atrap|D4Wsu124e - 4 E2|4 78.67 cM angiotensin II, type I receptor-associated protein protein-coding 319465 C030026K05Rik - - 8|8 RIKEN cDNA C030026K05 gene protein-coding 100035972 Skmw12 - - - skeletal muscle weight 12 unknown 108168604 XM_017318810 LOC108168604 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 628058 XM_003688835 Gm6833 EG628058 - 7|7 B3 predicted gene 6833 protein-coding 64139 Mm.279933 NM_022326 ENSMUSG00000074871 Ctsm 1600027J17Rik|AI324100|Catm - 13 B2|13 32.74 cM cathepsin M protein-coding 60958 DXMit87 - - X 34.81 cM DNA segment, Chr X, Massachusetts Institute of Technology 87 unknown 102638813 XR_380022 Gm35289 - - 9 F4|9 predicted gene, 35289 ncRNA 384703 Mm.377901 NM_207146 ENSMUSG00000044705 Olfr670 GA_x5J8B7W6B6J-141796-141659|MOR32-8 - 7|7 E3 olfactory receptor 670 protein-coding 546829 Gm11895 Hn1-ps1 - 4|4 A3 hematological and neurological expressed 1 pseudogene 1 pseudo 102632727 XR_880688 Gm30723 - - 3 A2|3 predicted gene, 30723 ncRNA 628686 Mm.203332 NR_126329 ENSMUSG00000097393 D030068K23Rik - - 8|8 D3 RIKEN cDNA D030068K23 gene ncRNA 16307 In(8)34Rk In34Rk - - inversion, Chr 8, Roderick 34 other 102637290 XR_001782773 Gm15151 - - X F3|X 68.46 cM predicted gene 15151 unknown 108098 Mm.26212 NM_025315 ENSMUSG00000030291 Med21 0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7 - 6 G3|6 77.7 cM mediator complex subunit 21 protein-coding 18158 Mm.2740 NM_008726 ENSMUSG00000029019 Nppb AA408272|BNF|BNP - 4 E2|4 78.57 cM natriuretic peptide type B protein-coding 240667 Mm.329873 NM_001033343 ENSMUSG00000051984 Sec31b Gm341|Sec31l2 - 19|19 C3 Sec31 homolog B (S. cerevisiae) protein-coding 142981 Cbx3-ps2 EG628648|Gm6901 - 13|13 chromobox 3, pseudogene 2 pseudo 109649 Chol1 - - - cholesterol 1 unknown 102638811 XR_374156 Gm35287 - - 2 A3|2 predicted gene, 35287 ncRNA 80796 Mm.21075 NM_020036 ENSMUSG00000033765 Calm4 2310037J09Rik|AI649108|DD112|Scarf - 13|13 A1 calmodulin 4 protein-coding 19684 Mm.245746 NM_009041 ENSMUSG00000032050 Rdx AA516625 - 9|9 A5.3 radixin protein-coding 105246702 Mm.440689 XR_878509 Gm41949 - - 1 E3|1 predicted gene, 41949 ncRNA 234086 Mm.268896 NM_001034862 ENSMUSG00000051978 Erich1 - - 8|8 A1.1 glutamate rich 1 protein-coding 19224 Mm.275434 NM_008969 ENSMUSG00000047250 Ptgs1 COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1 - 2 B|2 24.19 cM prostaglandin-endoperoxide synthase 1 protein-coding 20084 Mm.298745 NM_011296 ENSMUSG00000008668 Rps18 H-2Ke3|H2-Ke3|Ke-3|ke3 - 17 B1|17 17.98 cM ribosomal protein S18 protein-coding 102632496 XR_388057 Gm30554 - - 8 E1|8 predicted gene, 30554 ncRNA 102640344 Mm.405337 XR_875452 A730060N03Rik - - 15|15 E1 RIKEN cDNA A730060N03 gene ncRNA 110120362 LOC110120362 - - - VISTA enhancer mm27 biological-region 257772 Gm5001 EG257772|GA_x5J8B7W6GG0-4757855-4757501 - 6 C1|6 olfactory receptor GA_x5J8B7W6GG0-4757855-4757501 pseudo 102638513 Gm35059 - - 4|4 predicted gene, 35059 ncRNA 109751 Act7 - - - actin related gene 7 protein-coding 232333 Mm.5260 NM_178703 ENSMUSG00000030310 Slc6a1 A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1 - 6|6 E3 solute carrier family 6 (neurotransmitter transporter, GABA), member 1 protein-coding 102631985 Gm30175 - - Y|Y predicted gene, 30175 protein-coding 105244366 Gm39989 - - 11|11 predicted gene, 39989 ncRNA 619319 NM_001033815 4932430I15Rik - - 5|5 E3 RIKEN cDNA 4932430I15 gene unknown 102465566 NR_105904 ENSMUSG00000098380 Mir6939 Gm27498|mmu-mir-6939 - 12|12 F1 microRNA 6939 ncRNA 623402 Gm6425 EG623402 - 19|19 A solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 pseudogene pseudo 102636008 XR_383678 Gm33203 - - 14 E1|14 predicted gene, 33203 ncRNA 97074 C79557 - - - expressed sequence C79557 protein-coding 72098 Mm.441135 NM_028097 ENSMUSG00000028232 Tmem68 2010300G19Rik|AA408325|AW123402 - 4|4 A1 transmembrane protein 68 protein-coding 109279935 LOC109279935 Mm279 - - VISTA enhancer mm279 biological-region 100036207 Pgia20 - - - proteoglycan induced arthritis 20 unknown 53413 Mm.22530 NM_016857 ENSMUSG00000020792 Exoc7 Exo70|sec70 - 11|11 E2 exocyst complex component 7 protein-coding 69191 Mm.32631 NM_001081070 ENSMUSG00000024184 Pdia2 1810041F13Rik|AI661267|Pdip|Pdipl - 17|17 A3.3 protein disulfide isomerase associated 2 protein-coding 434025 Mm.304143 Igkv9-120 EG434025|Gm5571 - 6|6 C1 immunoglobulin kappa chain variable 9-120 other 100861923 Gm21330 - - Y|Y predicted gene, 21330 protein-coding 108168988 XR_001784517 LOC108168988 - - 4 E2 uncharacterized LOC108168988 ncRNA 108168766 XR_001783329 Gm46745 - - 2 C2|2 predicted gene, 46745 ncRNA 666633 Gm8202 EG666633 - X|X F2 predicted gene 8202 pseudo 100504389 Mm.138127 9030407P20Rik - - 7|7 RIKEN cDNA 9030407P20 gene unknown 102631798 XR_375856 Gm30044 - - 3 F2.1|3 predicted gene, 30044 ncRNA 100040538 Gm10448 - - X|X E3 predicted pseudogene 10448 protein-coding 105246394 XR_877290 Gm41686 - - 18 B1|18 predicted gene, 41686 ncRNA 102641016 XR_389579 LOC102641016 - - 12 F1 uncharacterized LOC102641016 ncRNA 100042372 Trav2 Gm10886|Gm1209 - 14|14 C2 T cell receptor alpha variable 2 other 14572 gdn - - - golden unknown 72027 Mm.276829 NM_028064 ENSMUSG00000063354 Slc39a4 1600025H15Rik|AU041686|AWMS2|ZIP4 - 15|15 D3 solute carrier family 39 (zinc transporter), member 4 protein-coding 100035124 Adip16 - - 12 30.06 cM adiposity 16 unknown 100035369 Etax11 - - - ethanol induced ataxia 11 unknown 79555 Mm.266668 NM_024473 ENSMUSG00000019132 BC005537 8030460C05Rik|C78201 - 13|13 A3.1 cDNA sequence BC005537 protein-coding 104037 Lop5 Lop-5 - - lens opacity 5 protein-coding 66628 Mm.269083 NM_001080969 ENSMUSG00000011254 Thg1l - - 11|11 B1.1 tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) protein-coding 102638958 XR_373453 Gm35393 - - 1 C2|1 predicted gene, 35393 ncRNA 234463 Mm.273578 NM_145599 ENSMUSG00000031617 Tmem184c 8430433H16Rik|AI645453|AL033298|BC004056|Tmem34 - 8|8 C1 transmembrane protein 184C protein-coding 97128 C76824 - - - expressed sequence C76824 protein-coding 62348 D1Mit405 - - 1 83.25 cM DNA segment, Chr 1, Massachusetts Institute of Technology 405 unknown 102634532 XM_011244862 ENSMUSG00000096685 Gm3642 100042054 - 14 A1|14 4.07 cM predicted gene 3642 protein-coding 260346 Gm5036 EG260346|c222389 - 10|10 B2 predicted gene 5036 pseudo 77432 Mm.491436 NM_023865 ENSMUSG00000023263 9530002B09Rik Aump|Vpp1|Vppl - 4|4 D2.2 RIKEN cDNA 9530002B09 gene protein-coding 108168668 XM_017318879 LOC108168668 - - Y E Y-linked testis-specific protein 1-like protein-coding 17966 Mm.784 NM_008676 ENSMUSG00000017119 Nbr1 mKIAA0049 - 11 D|11 65.36 cM neighbor of Brca1 gene 1 protein-coding 109280000 LOC109280000 Mm898 - - VISTA enhancer mm898 biological-region 723903 NR_029904 ENSMUSG00000065578 Mir181b-2 Mirn181b-2|mir-181b-2 - 2|2 B microRNA 181b-2 ncRNA 109279934 LOC109279934 Mm271 - - VISTA enhancer mm271 biological-region 100035662 Hdlq49 - - - HDL QTL 49 unknown 102631766 XR_386773 Gm30021 - - 19 D1|19 predicted gene, 30021 ncRNA 171198 Mm.222640 NM_134180 ENSMUSG00000115705 Vmn1r28 V1rc25 - 6|6 B3 vomeronasal 1 receptor 28 protein-coding 105244585 Gm40177 - - 3|3 predicted gene, 40177 ncRNA 23806 Mm.305925 NM_019927 ENSMUSG00000025234 Arih1 AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77 - 9|9 B ariadne RBR E3 ubiquitin protein ligase 1 protein-coding 258421 Mm.377490 NM_146429 ENSMUSG00000048919 Olfr223 MOR256-30 - 11|11 B1.3 olfactory receptor 223 protein-coding 53295 645M6T7 - - - DNA segment, 645M6T7 (Roswell Park) unknown 102634200 XR_383896 Gm31841 - - 15 B2|15 predicted gene, 31841 ncRNA 111703 Iapt11 - - - intracisternal A particle, tumor specific 11 other 102639589 XR_386638 Gm35866 - - 19 C1|19 predicted gene, 35866 ncRNA 493034 Lith10 - - 6 1.81 cM lithogenic gene 10 unknown 110120396 LOC110120396 - - - VISTA enhancer mm976 biological-region 103997 Dpa - - - D-phenylalanine unknown 100035886 Tdmq1 - - 9 25.36 cM type 2 diabetes modifying QTL 1 unknown 102632078 XR_388742 ENSMUSG00000087622 Gm12290 - - 11 B3|11 39.91 cM predicted gene 12290 ncRNA 668382 XM_003085258 Pabpc1l2b-ps EG668382|Pabpc1l2b|Rbm32b - X|X D poly(A) binding protein, cytoplasmic 1-like 2B, pseudogene protein-coding 100504440 Gm14577 - - X|X 23.19 cM predicted gene 14577 pseudo 102467632 n-TLtaa4 n-Tl26 - 19 A|19 nuclear encoded tRNA leucine 4 (anticodon TAA) tRNA 110120485 LOC110120485 - - - VISTA enhancer mm1514 biological-region 667845 Gm11241 - - 4|4 C3 malate dehydrogenase 2, NAD (mitochondrial) pseudogene pseudo 102640530 XR_375740 ENSMUSG00000102191 Gm36569 - - 3 E3|3 predicted gene, 36569 ncRNA 110133 Rmv2 Rmv-2 - - resistance to Moloney virus 2 protein-coding 54608 Mm.365490 NM_018811 ENSMUSG00000039202 Abhd2 2210009N18Rik|LABH2|Labh-2 - 7|7 D2 abhydrolase domain containing 2 protein-coding 258409 Mm.417822 NM_146414 ENSMUSG00000094133 Olfr1431 MOR214-5 - 19|19 A olfactory receptor 1431 protein-coding 100502668 Mm.482237 Gm19313 - - 4 E2|4 86.17 cM predicted gene, 19313 unknown 111285 Hmgn2-rs5 Hmg17-rs5 - - high mobility group nucleosomal binding domain 2, related sequence 5 pseudo 108167482 XM_017312471 Gm46011 - - 7 B3|7 predicted gene, 46011 protein-coding 16601 Mm.291595 NM_010638 ENSMUSG00000033863 Klf9 2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971 - 19|19 B Kruppel-like factor 9 protein-coding 110120406 LOC110120406 - - - VISTA enhancer mm979 biological-region 102640368 NR_151525 ENSMUSG00000087691 Gm15674 - - 1 E4|1 56.89 cM predicted gene 15674 ncRNA 105245268 XR_871973 Gm40746 - - 10 C3|10 predicted gene, 40746 ncRNA 100628583 NR_039568 ENSMUSG00000093017 Mir5108 mmu-mir-5108|mu-mir-5108 - 10 B4|10 32.28 cM microRNA 5108 ncRNA 102636039 XR_373314 Gm33222 - - 1 B|1 predicted gene, 33222 ncRNA 319930 Mm.215839 NM_177036 ENSMUSG00000049848 Ceacam19 C130022P09Rik|CEAL1 - 7|7 A3 carcinoembryonic antigen-related cell adhesion molecule 19 protein-coding 102633704 XR_373282 Gm31465 - - 1 A5|1 predicted gene, 31465 ncRNA 100041883 Gm3563 - - 7|7 A1 vomeronasal 2, receptor 39 pseudogene pseudo 68267 Mm.33729 NM_026646 ENSMUSG00000019082 Slc25a22 1300006L01Rik|AI060884|Gc1 - 7|7 F5 solute carrier family 25 (mitochondrial carrier, glutamate), member 22 protein-coding 229715 Mm.275752 NM_146137 ENSMUSG00000050947 Amigo1 Amigo|ali2 - 3|3 F2.3 adhesion molecule with Ig like domain 1 protein-coding 102642202 Mm.415363 NR_136934 ENSMUSG00000086648 Gm15511 - - 9 C|9 38.58 cM predicted gene 15511 ncRNA 666646 Gm12115 - - 11|11 A4 predicted gene 12115 pseudo 692174 Igkv11-118 ie11 - 6|6 C1 immunoglobulin kappa chain variable 11-118 pseudo 100035308 Sxbq3 Sxb-3 - 17 17.98 cM SGC/Knj cross B6 QTL 3 unknown 105245998 Gm41365 - - 15|15 predicted gene, 41365 ncRNA 13688 Mm.259516 NM_010124 ENSMUSG00000020091 Eif4ebp2 2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II - 10 B4|10 32.21 cM eukaryotic translation initiation factor 4E binding protein 2 protein-coding 66530 Mm.28000 NM_024432 ENSMUSG00000019578 Ubxn6 1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2 - 17|17 D UBX domain protein 6 protein-coding 547210 Mm.472681 NM_001177569 ENSMUSG00000094881 H2al2c Gm6026|H2al2y - Y A1|Y H2A histone family member L2C protein-coding 360117 D17Jcs120 - - - DNA segment, Chr 17, John C. Schimenti 120 unknown 692141 Igkv4-75 - - 6|6 C1 immunoglobulin kappa chain variable 4-75 pseudo 62663 D15Mit117 - - 15 34.41 cM DNA segment, Chr 15, Massachusetts Institute of Technology 117 unknown 53115 EC218RR - - - DNA segment, EC218RR unknown 57749 Mm.272720 NM_021311 ENSMUSG00000029423 Piwil1 MIWI - 5 G1.3|5 67.86 cM piwi-like RNA-mediated gene silencing 1 protein-coding 105244886 Gm40414 - - 6|6 predicted gene, 40414 pseudo 97234 C78802 - - - expressed sequence C78802 protein-coding 105244957 XR_872872 Gm40475 - - 12 D1|12 predicted gene, 40475 ncRNA 320139 Mm.258388 NM_177081 ENSMUSG00000031506 Ptpn7 BPTP-4|C920001D21Rik|HEPTP|LC-PTP|LPTP - 1|1 E4 protein tyrosine phosphatase, non-receptor type 7 protein-coding 242960 Mm.25794 NM_178729 ENSMUSG00000039753 Fbxl5 Fbl4|Fir4 - 5|5 B3 F-box and leucine-rich repeat protein 5 protein-coding 109280072 LOC109280072 Mm693 - - VISTA enhancer mm693 biological-region 62976 D15Mit244 - - 15 48.65 cM DNA Segment, Chr 15, Massachusetts Institute of Technology 244 unknown 20201 Mm.21567 NM_013650 ENSMUSG00000056054 S100a8 60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8 - 3 F1|3 39.9 cM S100 calcium binding protein A8 (calgranulin A) protein-coding 102638276 LOC102638276 - - 11 B1.1 ribosomal protein 63, mitochondrial-like pseudo 12096 Mm.389459 NM_007541 ENSMUSG00000074483 Bglap BGP|Bglap1|OC|OG1|mOC-A - 3 F1|3 38.82 cM bone gamma carboxyglutamate protein protein-coding 667487 Gm8662 EG667487 - X|X F4 predicted gene 8662 pseudo 100036452 Mpdk3 - - - modifier of polycystic kidney disease 3 unknown 16431 Mm.193 NM_008409 ENSMUSG00000031239 Itm2a AW108051|Bricd2a|E25|Itm2 - X|X D integral membrane protein 2A protein-coding 433261 Gm5521 EG433261 - 19|19 D3 mortality factor 4 like 2 pseudogene pseudo 24051 Mm.89310 NM_011890 ENSMUSG00000029156 Sgcb 43kDa|AI747103|AI844814|beta-SG - 5|5 C3.3 sarcoglycan, beta (dystrophin-associated glycoprotein) protein-coding 52758 D7Wsu170e - - - DNA segment, Chr 7, Wayne State University 170, expressed unknown 53417 Mm.135110 NM_016868 ENSMUSG00000004328 Hif3a Ipas|MOP7|NEPAS|bHLHe17 - 7|7 A2 hypoxia inducible factor 3, alpha subunit protein-coding 359929 DXMgc63 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 63 unknown 330814 Mm.260733 NM_181039 ENSMUSG00000013033 Adgrl1 2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821 - 8|8 C2 adhesion G protein-coupled receptor L1 protein-coding 109686 Brp13 Brp-13 - - brain protein 13 protein-coding 73485 Mm.396247 XR_377011 1700071G01Rik - - 5|5 C3.2 RIKEN cDNA 1700071G01 gene unknown 492907 Mbis2 Bana2 - - Mycobacterium bovis-induced systemic lupus erythematosus 2 unknown 100043053 Gm10620 - - 8 E1|8 predicted gene 10620 protein-coding 224180 Mm.146439 NM_175010 Gm4827 B130050K08|EG224180 - 16 B5|16 predicted gene 4827 ncRNA 50779 Mm.126176 NM_015812 ENSMUSG00000021219 Rgs6 - - 12 D1|12 38.14 cM regulator of G-protein signaling 6 protein-coding 780937 Ighv1-57 - - 12|12 F2 immunoglobulin heavy variable V1-57 pseudo 215723 Mm.131205 NM_146004 ENSMUSG00000048329 Mfsd6l - - 11|11 B3 major facilitator superfamily domain containing 6-like protein-coding 67420 Mm.206919 NM_026143 ENSMUSG00000030759 Far1 2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2 - 7|7 F1 fatty acyl CoA reductase 1 protein-coding 100038562 Mm.181624 Gm10869 - - - predicted gene 10869 protein-coding 80985 Mm.315002 NM_020267 ENSMUSG00000027189 Trim44 Dipb|Mc7 - 2|2 E2 tripartite motif-containing 44 protein-coding 102639517 XR_386047 Gm35814 - - 18 A1|18 predicted gene, 35814 ncRNA 108622 Iap5rb20 - - - intracisternal A-type particle, U5 region, SINE repeat b-20 other 224109 Mm.33498 NM_146069 ENSMUSG00000052384 Nrros E430025L02Rik|Lrcc33|Lrrc33 - 16|16 B2 negative regulator of reactive oxygen species protein-coding 100035195 Pbwg18 - - - postnatal body weight growth 18 unknown 93882 Mm.196702 NM_053136 ENSMUSG00000051486 Pcdhb11 Pcdhb5E|PcdhbK - 18|18 B3 protocadherin beta 11 protein-coding 70289 Mm.440380 2510016D11Rik - - 5|5 RIKEN cDNA 2510016D11 gene protein-coding 100316831 NR_035418 ENSMUSG00000080594 Mir669h Mirn669h|mir-669h|mmu-mir-669h - 2 A1|2 8.22 cM microRNA 669h ncRNA 51872 D2Ertd282e - - - DNA segment, Chr 2, ERATO Doi 282, expressed unknown 100038444 Gm10472 - - - predicted gene 10472 protein-coding 111401 Emv34 Emv-34 - - endogenous ecotropic MuLV 34 other 108534 Ms13-2 Ms13-Ps2 - - minisatellite 13-2 detected by M13 phage probe other 321022 Mm.261025 NM_175565 ENSMUSG00000032803 Cdv3 2510010F10Rik|C230084J24Rik|C79446|TPP36 - 9|9 F1 carnitine deficiency-associated gene expressed in ventricle 3 protein-coding 68453 Mm.46367 NM_026730 ENSMUSG00000022579 Gpihbp1 1110002J19Rik|GPI-HBP1 - 15|15 D3 GPI-anchored HDL-binding protein 1 protein-coding 381633 Mm.4923 NM_001033458 ENSMUSG00000070858 Gm1673 - - 5|5 B2 predicted gene 1673 protein-coding 101477 Mm.436970 AA960618 - - - expressed sequence AA960618 unknown 102640838 LOC102640838 - - 12 F1 ubiquitin-conjugating enzyme E2 variant 1 pseudogene pseudo 108169100 XM_017321260 ENSMUSG00000092166 LOC108169100 - - 5 E3 PRAME family member 8-like protein-coding 100036295 Nwa2 - - 19 36.26 cM New Zealand White autoimmunity 2 unknown 27586 D5Buc33 503D21.T7 - - DNA segment, Chr 5, Bucan 33 unknown 74176 Mm.20187 NM_028799 ENSMUSG00000053675 Tgm5 2310007C07Rik|TGMX|TGx - 2|2 E5 transglutaminase 5 protein-coding 110120460 LOC110120460 - - - VISTA enhancer mm1506 biological-region 61890 D1Mit431 - - 1 8.7 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 431 unknown 71169 Mm.177520 NM_027706 ENSMUSG00000020576 Nbas 4933425L03Rik|Nag - 12|12 A1.1 neuroblastoma amplified sequence protein-coding 102639996 XR_872011 Gm36177 - - 10 D1|10 predicted gene, 36177 ncRNA 236546 Mm.247428 NM_199060 ENSMUSG00000095071 AF067061 - - 13 D2.3|13 cDNA sequence AF067061 protein-coding 381612 Gm5152 EG381612 - 5|5 A1 predicted gene 5152 pseudo 666942 Gm8373 EG666942 - 17|17 A3.3 predicted gene 8373 pseudo 258304 Mm.377424 NM_146307 ENSMUSG00000096679 Olfr498 MOR204-36 - 7|7 E3 olfactory receptor 498 protein-coding 492953 Cocia4 - - 1 10.59 cM cocaine induced activation 4 unknown 17349 Mm.10414 NM_010801 ENSMUSG00000048416 Mlf1 HLS7 - 3 E1|3 30.91 cM myeloid leukemia factor 1 protein-coding 28174 D16Ium38e D16Ium38 - - DNA segment, Chr 16, Indiana University Medical 38, expressed unknown 85159 DXMit222 - - X 76.75 cM DNA segment, Chr X, Massachusetts Institute of Technology 222 unknown 102637315 XR_380002 Gm34159 - - 9 F4|9 predicted gene, 34159 ncRNA 100035175 Mord2 - - - modifier of retinal degeneration 2 unknown 64706 Mm.40393 NM_022723 ENSMUSG00000016763 Scube1 7330410C13Rik|A630023E24Rik - 15|15 E1 signal peptide, CUB domain, EGF-like 1 protein-coding 258890 Mm.472596 NM_146888 ENSMUSG00000094858 Olfr1297 MOR248-4 - 2|2 E3 olfactory receptor 1297 protein-coding 112405 Mm.140619 NM_053207 ENSMUSG00000031987 Egln1 AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20 - 8|8 E2 egl-9 family hypoxia-inducible factor 1 protein-coding 434874 XM_017318668 Gm5645 EG434874 - X|X F3 predicted pseudogene 5645 protein-coding 100417785 Gm13677 - - 2|2 D predicted gene 13677 pseudo 227794 Olfr364-ps1 GA_x6K02T2NLDC-33831282-33832243|MOR138-4P|MOR138-7|Olfr364 - 2|2 B olfactory receptor 364, pseudogene 1 pseudo 105247035 XR_001783815 Gm42217 - - 3 B|3 predicted gene, 42217 ncRNA 665260 Gm7559 EG665260 - 16|16 C3.3 tripartite motif-containing 55 pseudogene pseudo 51875 Mm.271147 NM_001040130 ENSMUSG00000026939 Tmem141 1110065P14Rik|AI663999|D2Ertd217e - 2 A3|2 17.57 cM transmembrane protein 141 protein-coding 100416096 Gm14806 - - X|X C3 sorting nexin 10 pseudogene pseudo 102638973 XR_386738 Gm35406 - - 19 C3|19 predicted gene, 35406 ncRNA 100034848 Heal9 - - 18 43.49 cM wound healing/regeneration 9 unknown 100416873 Gm14840 - - X|X D high mobility group box 1 pseudogene pseudo 102640618 Gm36638 - - 13|13 predicted gene, 36638 ncRNA 76709 Mm.337038 NM_029711 ENSMUSG00000006304 Arpc2 2210023N03Rik|34kDa|p34-Arc - 1 38.49 cM|1 C3 actin related protein 2/3 complex, subunit 2 protein-coding 51786 Mm.716 NM_016856 ENSMUSG00000041781 Cpsf2 100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367 - 12|12 E cleavage and polyadenylation specific factor 2 protein-coding 665585 Gm7700 EG665585 - X|X A4 SEC13 homolog pseudogene pseudo 16553 Mm.342703 NM_010617 ENSMUSG00000021375 Kif13a 4930505I07Rik|mKIAA4109 - 13|13 A5 kinesin family member 13A protein-coding 57430 Mm.6590 NM_020565 ENSMUSG00000069668 Sult3a1 ST3A1|Sult-x2|Sultx2 - 10|10 B1 sulfotransferase family 3A, member 1 protein-coding 100503791 Gm16201 - - 7|7 84.92 cM predicted gene 16201 ncRNA 107271 Mm.145488 NM_134151 ENSMUSG00000028811 Yars AL024047|AU018965 - 4|4 D2.2 tyrosyl-tRNA synthetase protein-coding 100316810 NR_035445 ENSMUSG00000084751 Mir1894 Mirn1894|mmu-mir-1894 - 17 B1|17 18.77 cM microRNA 1894 ncRNA 210801 Mm.248433 NM_153135 ENSMUSG00000063626 Unc5d D930029E11Rik|Unc5h4|mKIAA1777 - 8|8 A2 unc-5 netrin receptor D protein-coding 18100 Mm.20918 NM_010922 ENSMUSG00000022706 Mrpl40 Nlvcf - 16 A3|16 11.69 cM mitochondrial ribosomal protein L40 protein-coding 20620 Mm.380 NM_152804 ENSMUSG00000021701 Plk2 Snk - 13|13 D2.1 polo like kinase 2 protein-coding 100035759 Fob3a - - - F-line obesity QTL 3a unknown 100417670 Gm18751 - - 1|1 G1 inner membrane protein, mitochondrial pseudogene pseudo 93971 Mm.14112 NM_053154 Klra19 Ly49s - 6|6 F3 killer cell lectin-like receptor, subfamily A, member 19 protein-coding 100039258 Gm10290 - - 5|5 B1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100036401 Bmc7 - - - bone mineral content 7 unknown 102632053 XR_380043 A330032P22Rik - - 10|10 A1 RIKEN cDNA A330032P22 gene protein-coding 78876 B230214N19Rik - - 19|19 C3 RIKEN cDNA B230214N19 gene protein-coding 104153 Spl - - - plasma serotonin level unknown 110195 Gtpc - - - GTP concentration, erythrocytic protein-coding 73554 Mm.320005 NR_045931 ENSMUSG00000092499 1700092C10Rik - - 14|14 D2 RIKEN cDNA 1700092C10 gene ncRNA 666138 Gm7945 EG666138 - 14|14 B predicted gene 7945 protein-coding 100502763 Prox2os Gm19357 - 12|12 39.54 cM prospero homeobox 2 opposite strand ncRNA 78082 Mm.243927 NR_130988 ENSMUSG00000089874 9230117E06Rik - - 16|16 B1 RIKEN cDNA 9230117E06 gene ncRNA 62681 D16Mit113 - - 16 32.13 cM DNA segment, Chr 16, Massachusetts Institute of Technology 113 unknown 102632227 XR_377638 Gm30362 - - 6 B2.3|6 predicted gene, 30362 ncRNA 723885 NR_029749 ENSMUSG00000065527 Mir93 Mirn93|mir-93|mmu-mir-93 - 5|5 G2 microRNA 93 ncRNA 56195 Mm.29966 NM_019550 ENSMUSG00000028134 Ptbp2 Ptb2|brPTB|nPTB - 3|3 G1 polypyrimidine tract binding protein 2 protein-coding 112307 Mwq1 - - - molecular weight of quadriceps QTL 1 unknown 105244278 XR_866675 Gm39918 - - 2 E5|2 predicted gene, 39918 ncRNA 102636517 Gm33559 - - 1|1 predicted gene, 33559 ncRNA 102636627 XR_378864 Gm33638 - - 8 A4|8 predicted gene, 33638 ncRNA 219103 Mm.212525 NM_001014996 ENSMUSG00000064128 Cenpj 4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4 - 14|14 C3 centromere protein J protein-coding 102635720 LOC102635720 - - 13 A4 non-histone chromosomal protein HMG-17 pseudogene pseudo 16616 Mm.443292 NM_010642 ENSMUSG00000066516 Klk1b21 Klk21|mGk-21 - 7 B3|7 28.6 cM kallikrein 1-related peptidase b21 protein-coding 102632211 XR_375652 Gm30351 - - 3 C|3 predicted gene, 30351 ncRNA 105638 Mm.2519 NM_172254 ENSMUSG00000021905 Dph3 DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2 - 14|14 B diphthamine biosynthesis 3 protein-coding 18391 Mm.425181 NM_011014 ENSMUSG00000036078 Sigmar1 Oprs1|Sig1R|sigma1R - 4|4 A5 sigma non-opioid intracellular receptor 1 protein-coding 77968 A930041D05Rik - - 4|4 RIKEN cDNA A930041D05 gene protein-coding 102633675 Gm31442 - - 7|7 predicted gene, 31442 ncRNA 105244153 XR_879810 Gm39815 - - 11 B1.1|11 predicted gene, 39815 ncRNA 359921 DXMgc84 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 84 unknown 100036749 Fbtq1 - - - femoral bone trait QTL 1 unknown 217203 Mm.280559 NM_144830 ENSMUSG00000034947 Tmem106a 0610008L10Rik|AI043106|BC022145 - 11|11 D transmembrane protein 106A protein-coding 102633249 Mm.428127 XR_376248 ENSMUSG00000104785 Gm31121 - - 3 H3|3 predicted gene, 31121 ncRNA 232784 Mm.196782 NM_145576 ENSMUSG00000052763 Zfp212 Znf212|mKIAA3011 - 6|6 B2.3 Zinc finger protein 212 protein-coding 100035177 Bomd7 - - 11 54.6 cM bone mineral density 7 unknown 71623 Mm.293700 NM_027844 ENSMUSG00000054759 Krtap5-2 4833428E21Rik - 7|7 F5 keratin associated protein 5-2 protein-coding 109279931 LOC109279931 Mm251 - - VISTA enhancer mm251 biological-region 75381 Mm.417807 NR_040479 ENSMUSG00000100777 4930598F16Rik - - 1|1 D RIKEN cDNA 4930598F16 gene ncRNA 111809 Iapls1-31 - - - intracisternal A particle, lymphocyte specific 1-31 other 625732 Gm11893 - - 4|4 A3 predicted gene 11893 pseudo 102638742 Mm.381153 XR_877463 Gm35234 - - 18 D3|18 predicted gene, 35234 ncRNA 14479 Mm.244209 NM_027604 ENSMUSG00000020124 Usp15 4921514G19Rik|AI327321|E430033I05Rik|Gcap18 - 10|10 D2 ubiquitin specific peptidase 15 protein-coding 100502920 Mm.403982 NR_038016 ENSMUSG00000097069 Gm16998 - - 10 B3|10 27.48 cM predicted gene, 16998 ncRNA 100038579 C730037M02Rik - - 19 B|19 RIKEN cDNA C730037M02 gene unknown 105245542 XR_873607 Gm40987 - - 13 B3|13 predicted gene, 40987 ncRNA 252830 Mm.25863 NM_145710 ENSMUSG00000041583 Obox6 D17Ertd599e - 7|7 A2 oocyte specific homeobox 6 protein-coding 100526465 NR_037218 ENSMUSG00000092781 Mir3057 mir-3057|mmu-mir-3057 - 10 C1|10 39.72 cM microRNA 3057 ncRNA 20459 Mm.4497 NM_009184 ENSMUSG00000038751 Ptk6 BRK|Sik|Tksk|tks - 2 H4|2 103.62 cM PTK6 protein tyrosine kinase 6 protein-coding 544707 Mm.349862 NR_033602 ENSMUSG00000112471 Gm5779 EG544707 - 10|10 C1 ribosomal protein, large, P0 pseudogene pseudo 67884 Mm.297512 NM_026431 ENSMUSG00000020284 1810043G02Rik AV026620|D10Jhu13e - 10 C1|10 39.72 cM RIKEN cDNA 1810043G02 gene protein-coding 102635041 XR_387962 Gm32477 - - 8 D1|8 predicted gene, 32477 ncRNA 100043102 Mm.30797 NR_033631 ENSMUSG00000097184 4632428C04Rik Gm4231 - 16 B2|16 RIKEN cDNA 4632428C04 gene ncRNA 29815 Mm.45815 NM_013867 ENSMUSG00000028121 Bcar3 AI131758|AND-34 - 3|3 G1 breast cancer anti-estrogen resistance 3 protein-coding 105246748 Gm41990 - - 3|3 predicted gene, 41990 ncRNA 100041658 Mm.457982 NM_001134675 ENSMUSG00000073842 Mup7 Gm12546|Mup3 - 4 B3|4 major urinary protein 7 protein-coding 77490 Mm.426238 NR_040435 ENSMUSG00000086322 E130218I03Rik E130106C14Rik - 4|4 D3 RIKEN cDNA E130218I03 gene ncRNA 54339 Mm.441473 Tes3-ps - - 13|13 A5 testis derived transcript 3, pseudogene pseudo 67680 Mm.246965 NM_023374 ENSMUSG00000009863 Sdhb 0710008N11Rik - 4|4 D3 succinate dehydrogenase complex, subunit B, iron sulfur (Ip) protein-coding 624855 Mm.390061 NM_001037922 ENSMUSG00000062687 Cks1brt EG624855|Gm6531 - 8 C3|8 CDC28 protein kinase 1b, retrogene protein-coding 71166 Mm.157049 NR_040290 ENSMUSG00000102416 4933424G06Rik 1700104I15Rik - 1|1 B RIKEN cDNA 4933424G06 gene ncRNA 777655 Ighj3 Gm16843 - 12|12 F1 immunoglobulin heavy joining 3 other 100416913 Gm18316 - - 13|13 A3.2-A3.3 SCAN domain containing 3 pseudogene pseudo 60937 DXMit29 - - X 78.5 cM DNA segment, Chr X, Massachusetts Institute of Technology 29 unknown 665916 Gm7847 EG665916 - 18|18 A2 predicted gene 7847 pseudo 12164 Mm.439764 NM_007559 ENSMUSG00000002384 Bmp8b Op3 - 4 D2.2|4 57.38 cM bone morphogenetic protein 8b protein-coding 667287 Gm8557 EG667287 - 12|12 D2 predicted gene 8557 pseudo 383250 Mif-ps8 EG383250|Gm5228|Mif-ps3 - 17|17 C macrophage migration inhibitory factor, pseudogene 8 pseudo 105246907 XR_880409 Gm15831 - - 5 C3.3|5 41.45 cM predicted gene 15831 ncRNA 320120 A130067G02Rik - - 10|10 A2 RIKEN cDNA A130067G02 gene protein-coding 622728 Ighv1-75 Gm16811 - 12|12 F2 immunoglobulin heavy variable 1-75 other 14349 Mm.422607 NM_010244 ENSMUSG00000070583 Fv1 Fv-1|Rv-1|Rv1 - 4 E2|4 78.56 cM Friend virus susceptibility 1 protein-coding 108720141 LOC108720141 - - 4 A1 ES cell cis-regulatory motif 9a biological-region 664944 Gm7415 EG664944 - X A3.1|X predicted pseudogene 7415 pseudo 666873 Gm8339 EG666873 - 11|11 E1 Smad nuclear interacting protein 1 pseudogene pseudo 100415952 Gm17835 - - 3|3 B hemopexin pseudogene pseudo 108167620 XR_001778901 Gm46088 - - 1 B|1 predicted gene, 46088 ncRNA 72692 Mm.64579 NM_144802 ENSMUSG00000024095 Hnrnpll 2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll - 17|17 E3 heterogeneous nuclear ribonucleoprotein L-like protein-coding 70345 Mm.411813 NR_028125 ENSMUSG00000097882 0610038B21Rik - - 8|8 C1 RIKEN cDNA 0610038B21 gene ncRNA 751544 NR_030242 ENSMUSG00000070139 Mir532 Mirn532|mir-532|mmu-mir-532 - X A1.1|X microRNA 532 ncRNA 103517 Mm.435820 BB187676 - - - expressed sequence BB187676 protein-coding 102633720 XR_391161 Gm29638 - - 7 A1|7 predicted gene 29638 ncRNA 665241 Gm7551 EG665241 - 7|7 C heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 66079 Mm.482265 NM_025339 ENSMUSG00000066233 Tmem42 0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e - 9 F4|9 73.52 cM transmembrane protein 42 protein-coding 102633291 Mm.459187 XR_001778041 Gm31152 Gm45603 - 7 A1|7 predicted gene, 31152 ncRNA 109280041 LOC109280041 Mm304 - - VISTA enhancer mm304 biological-region 102466882 NR_106172 ENSMUSG00000098634 Mir8096 Gm27479|mmu-mir-8096 - 1|1 C5 microRNA 8096 ncRNA 105244420 XR_879955 Gm40029 - - 11 B3|11 predicted gene, 40029 ncRNA 64654 Mm.347933 NM_022657 ENSMUSG00000000182 Fgf23 - - 6|6 F3 fibroblast growth factor 23 protein-coding 75243 Mm.444753 NR_130981 ENSMUSG00000114048 4930549C15Rik - - 12|12 A2 RIKEN cDNA 4930549C15 gene ncRNA 69363 Mm.45607 NM_027055 ENSMUSG00000070563 Spaca4 1700008E09Rik|AV043694|Samp14 - 7|7 B3 sperm acrosome associated 4 protein-coding 791303 Mm.484762 XR_388866 Gm10277 - - 11 B5|11 predicted gene 10277 unknown 16429 Mm.247426 NM_010584 ENSMUSG00000038209 Itln1 IntL|Itln|Itln2|Itln3|Itln5|Itlna|Lfr - 1|1 H3 intelectin 1 (galactofuranose binding) protein-coding 628541 Igkv4-69 EG628541|Gm6894|km4 - 6|6 C1 immunoglobulin kappa variable 4-69 other 114261 Manz6 QTL-C10.1 - - mandible size 6 unknown 78734 Mm.258969 8030402F09Rik - - 10|10 RIKEN cDNA 8030402F09 gene protein-coding 102631850 Gm26927 - - 13|13 predicted gene, 26927 pseudo 666851 Gm8324 100040565|EG666851|Gm2843 - 14|14 A1 ribosomal protein L3 pseudogene pseudo 329659 Mm.39342 NM_177856 ENSMUSG00000048581 E130311K13Rik - - 3|3 E1 RIKEN cDNA E130311K13 gene protein-coding 105244907 XR_872785 Gm40431 - - 12 C1|12 predicted gene, 40431 ncRNA 442799 Mm.444577 NM_001033495 9330154J02Rik - - 9|9 E3.1 RIKEN cDNA 9330154J02 gene unknown 85231 D18Mit224 - - 18 14.19 cM DNA segment, Chr 18, Massachusetts Institute of Technology 224 unknown 628916 Serpina3l-ps 3E2|EG628916|Gm6933|Serpina3l|spi2 - 12 E|12 serine (or cysteine) peptidase inhibitor, clade A, member 3L, pseudogene pseudo 106757 Mm.23401 NM_175350 ENSMUSG00000040828 Catsperd 4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146 - 17|17 D cation channel sperm associated auxiliary subunit delta protein-coding 433171 Mm.353332 NR_045415 Gm10549 - - 18 B1|18 predicted gene 10549 ncRNA 27827 335F15F - - - DNA segment, 335F15F (Research Genetics) unknown 625540 Mm.258508 XR_377119 ENSMUSG00000107143 Gm6598 EG625540|Gm42469 - 5|5 G1.3 predicted gene 6598 ncRNA 319254 Mm.453025 9630039A02Rik - - 6|6 RIKEN cDNA 9630039A02 gene protein-coding 77103 Mm.402172 XR_870435 5330439A09Rik - - 8|8 B1.3 RIKEN cDNA 5330439A09 gene ncRNA 102641079 XR_389905 LOC102641079 - - - uncharacterized LOC102641079 ncRNA 11443 Mm.86425 NM_009601 ENSMUSG00000041189 Chrnb1 Achr-2|Acrb - 11 B3|11 42.87 cM cholinergic receptor, nicotinic, beta polypeptide 1 (muscle) protein-coding 404310 Mm.377935 NM_207550 ENSMUSG00000074996 Olfr199 GA_x5J8B7W8B52-93129-93296|MOR182-14 - 16|16 C1.3 olfactory receptor 199 protein-coding 105244449 Mm.405410 XR_867315 Gm40055 Gm42512 - 3 D|3 predicted gene, 40055 protein-coding 102638240 XR_378059 Gm34849 - - 6 F3|6 predicted gene, 34849 ncRNA 387219 NR_029743 ENSMUSG00000065468 Mir26b Mirn26b|mir-26b|mmu-mir-26b - 1|1 C3 microRNA 26b ncRNA 17927 Mm.1526 NM_010866 ENSMUSG00000009471 Myod1 AI503393|MYF3|MyoD|Myod-1|bHLHc1 - 7 B3|7 30.03 cM myogenic differentiation 1 protein-coding 102636233 LOC102636233 - - 2 C1.2 40S ribosomal protein S21 pseudogene pseudo 110120458 LOC110120458 - - - VISTA enhancer mm1492 biological-region 20378 Mm.427436 NM_011356 ENSMUSG00000027004 Frzb Frp|Sfrp3|frezzled|fritz|frzb-1 - 2 C3|2 48.13 cM frizzled-related protein protein-coding 111043198 Gm46996 - - 12|12 predicted gene 46996 pseudo 73132 Mm.37457 NM_175194 ENSMUSG00000071253 Slc25a16 3110021G18Rik|GDA|GDC|HGT.1|ML7 - 10|10 B4 solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16 protein-coding 107714 Ptma-rs1 - - - prothymosin alpha, related sequence 1 protein-coding 13233 Mm.425522 Defa14 Defcr14 - 8|8 defensin, alpha, 14 protein-coding 102632759 Gm30748 - - 14|14 predicted gene, 30748 pseudo 227588 Gm13368 - - 2|2 A2 predicted gene 13368 pseudo 70807 Mm.24215 NM_027560 ENSMUSG00000002910 Arrdc2 4632416I05Rik|Ilad1 - 8|8 B3.3 arrestin domain containing 2 protein-coding 667325 Gm8575 EG667325 - 8|8 B1.1 peroxiredoxin 2 pseudogene pseudo 100416666 Gm18177 - - Y|Y A1 zinc finger protein 397 pseudogene pseudo 100036488 W3q9 - - - weight 3 weeks QTL 9 unknown 258634 Mm.377604 NM_146641 ENSMUSG00000075136 Olfr1164 MOR174-11 - 2|2 D olfactory receptor 1164 protein-coding 13628 Mm.2645 NM_007906 ENSMUSG00000016349 Eef1a2 EEF1AL|EF-1-alpha-2|Eef1a|S1|STN|wasted|wst - 2 H4|2 103.6 cM eukaryotic translation elongation factor 1 alpha 2 protein-coding 27424 Mm.24399 NM_013794 Klra16 Klra24|Ly-49P|Ly49P|Ly49x - 6|6 F3 killer cell lectin-like receptor, subfamily A, member 16 protein-coding 100039556 Gm2308 - - 7 B3|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102634560 XR_391304 Gm32110 - - 7 B3|7 predicted gene, 32110 ncRNA 622282 Mm.249065 XM_017319383 Gm6306 EG622282 - 2|2 E2 predicted gene 6306 protein-coding 105246964 XR_880572 Gm42154 - - 5 F|5 predicted gene, 42154 ncRNA 102635853 Mm.436098 XR_386220 Gm16283 - - 18 C|18 27.09 cM predicted gene 16283 ncRNA 102638705 XR_373799 Gm35201 - - 1 H5|1 predicted gene, 35201 ncRNA 102467365 n-TPagg3 n-Tp3 - 13 A3.1|13 nuclear encoded tRNA proline 3 (anticodon AGG) tRNA 66695 Mm.383216 NM_025711 ENSMUSG00000021388 Aspn 4631401G09Rik|AA986886|Plap1|Slrr1c - 13|13 A5 asporin protein-coding 108169039 XR_001784844 ENSMUSG00000085166 LOC108169039 - - 5 B2 uncharacterized LOC108169039 ncRNA 109279938 LOC109279938 Mm308 - - VISTA enhancer mm308 biological-region 13110 Mm.98200 NM_010008 ENSMUSG00000052914 Cyp2j6 - - 4 C5|4 44.62 cM cytochrome P450, family 2, subfamily j, polypeptide 6 protein-coding 19156 Mm.29978 NM_011179 ENSMUSG00000004207 Psap AI037048|SGP-1 - 10 B4|10 30.02 cM prosaposin protein-coding 102640165 Gm36298 - - 13 B3|13 predicted gene, 36298 pseudo 102640333 XR_878408 Gm36424 - - 1 D|1 predicted gene, 36424 ncRNA 66194 Mm.250599 NM_025412 ENSMUSG00000022571 Pycrl 1110058B13Rik|2700073G24Rik|Pycr3 - 15|15 D3 pyrroline-5-carboxylate reductase-like protein-coding 433712 Rpsa-ps11 Gm12595 - 4|4 B3 ribosomal protein SA, pseudogene 11 pseudo 100418400 Pafah1b1-ps2 Lis4|Mdsh4|Pafaha-ps2 - 7|7 A1 platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 2 pseudo 102635072 XR_388663 Gm32500 - - 11 B1.3|11 predicted gene, 32500 ncRNA 108464 Ms34 MMS34 - - minisatellites detected by probe MMS34 other 102465659 NR_106055 ENSMUSG00000098327 Mir7087 Gm27273|mmu-mir-7087 - 9|9 A5.2 microRNA 7087 ncRNA 93930 D16Jhu69 410O15.SP6 - - DNA segment, Chr 16, Johns Hopkins University 69 unknown 66933 Mm.396201 1700025L06Rik - - 7|7 RIKEN cDNA 1700025L06 gene protein-coding 19615 Rb(8.14)16Rma Rb16Rma - - Robertsonian translocation, Chr 8 and 14, Universita di Roma 16 other 14703 Gng2-ps1 - - 4 A3|4 11.11 cM guanine nucleotide binding protein (G protein), gamma 2 subunit, pseudogene 1 pseudo 74127 Mm.440055 NM_028770 ENSMUSG00000037185 Krt80 1200016G03Rik|2310041I20Rik|Kb20 - 15 F2|15 keratin 80 protein-coding 27393 Mm.103655 NM_017404 ENSMUSG00000022889 Mrpl39 C21orf8|MRP-L5|ORF22|Rpml5 - 16|16 C3.3 mitochondrial ribosomal protein L39 protein-coding 98010 C77626 - - - expressed sequence C77626 unknown 76053 5830426K05Rik - - 11|11 RIKEN cDNA 5830426K05 gene protein-coding 111895 Iap5rc4 - - - intracisternal A-type particle, U5 region, SINE repeat c-4 other 630952 NM_001011876 ENSMUSG00000072598 Ang6 EG630952 - 14|14 C1 angiogenin, ribonuclease A family, member 6 protein-coding 67710 Mm.22117 NM_026329 ENSMUSG00000071662 Polr2g 2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l - 19|19 A polymerase (RNA) II (DNA directed) polypeptide G protein-coding 102637296 Gm34144 - - 5|5 predicted gene, 34144 ncRNA 102637277 Gm21994 - - 2|2 predicted gene 21994 protein-coding 105244042 Gm39726 - - 11|11 predicted gene, 39726 ncRNA 105247118 XR_881208 Gm42276 - - 4 A5|4 predicted gene, 42276 ncRNA 100043380 Mm.106408 Gm4402 - - 18 E2|18 predicted gene 4402 unknown 101055983 XM_006541411 ENSMUSG00000091556 Gm14569 - - X A3.3|X 20.82 cM predicted gene 14569 protein-coding 108167532 XR_001778561 Gm46040 - - 8 B3.1|8 predicted gene, 46040 ncRNA 53003 N13T7 - - - DNA segment, N13T7 unknown 68163 Mm.185935 A930006D01Rik - - 8|8 RIKEN cDNA A930006D01 gene unknown 100034757 Trmq1 - - 6 77.7 cM T cell ratio modifier QTL 1 unknown 111580 Xmv63 Xmv-63 - - xenotropic murine leukemia virus 63 other 74533 Mm.136913 NM_028986 ENSMUSG00000027439 Gzf1 8430437G08Rik|Zfp336|mGZF1 - 2|2 G3 GDNF-inducible zinc finger protein 1 protein-coding 98809 AA537040 - - - expressed sequence AA537040 unknown 628709 Mm.390595 NM_001177832 ENSMUSG00000095909 Gm10324 - - 13 B3|13 predicted gene 10324 protein-coding 54610 Mm.387293 NM_018775 ENSMUSG00000003134 Tbc1d8 AD3|HBLP1|VRP - 1|1 B TBC1 domain family, member 8 protein-coding 102634101 Mm.445258 NR_110511 ENSMUSG00000112925 Gm31763 - - 10 B5.1|10 predicted gene, 31763 ncRNA 434003 Mm.332979 NR_152155 ENSMUSG00000084973 Gm13848 - - 6|6 A3.3 predicted gene 13848 ncRNA 105244245 Mm.438032 XR_866576 Gm39888 - - 2 E2|2 predicted gene, 39888 ncRNA 108024 Mm.300786 Igkv6-20 Igk-V19-20 - 6|6 C1 immunoglobulin kappa variable 6-20 other 433387 Rpl21-ps1 EG433387|Gm5534 - 1|1 H5 ribosomal protein 21, pseudogene 1 pseudo 76627 Mm.31415 NM_029680 ENSMUSG00000042888 Prr30 1700110M21Rik - 14|14 E2.3 proline rich 30 protein-coding 100038647 Mm.484122 Gm10572 - - 4 D2.2|4 predicted gene 10572 unknown 100035443 Brml5 - - - bone response to mechanical loading 5 unknown 208440 Mm.217326 NM_172459 ENSMUSG00000048264 Dip2c 2900024P20Rik|9630044M06|mKIAA0934 - 13|13 A1 disco interacting protein 2 homolog C protein-coding 12258 Mm.38888 NM_009776 ENSMUSG00000023224 Serping1 C1INH|C1nh - 2|2 D serine (or cysteine) peptidase inhibitor, clade G, member 1 protein-coding 94281 Mm.48179 NM_053198 ENSMUSG00000063698 Sfxn4 - - 19|19 D3 sideroflexin 4 protein-coding 100036193 Brml3 - - - bone response to mechanical loading 3 unknown 18173 Mm.2913 NM_013612 ENSMUSG00000026177 Slc11a1 Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity - 1 C3|1 38.54 cM solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 protein-coding 114810 Bwtq2 - - - body weight QTL 2 unknown 100041012 Mm.460754 XR_874077 Gm3095 - - 14 A1|14 predicted gene 3095 protein-coding 105244916 Mm.393265 XR_872804 Gm40438 - - 12 C3|12 predicted gene, 40438 ncRNA 100861898 XM_006516436 ENSMUSG00000113201 Gm21936 - - 12 D2|12 predicted gene, 21936 protein-coding 100678 Mm.271784 NM_133900 ENSMUSG00000029446 Psph AI480570|PSP|PSPase - 5|5 G1.3 phosphoserine phosphatase protein-coding 112433 Lrnpcs2 - - - learning-preconditioned stimulus 2 unknown 76961 Mm.396392 NR_045389 ENSMUSG00000101773 2210420H20Rik - - 18|18 E3 RIKEN cDNA 2210420H20 gene ncRNA 57340 Mm.306870 NM_020605 ENSMUSG00000025318 Jph3 JP-3|Jp3 - 8|8 E1 junctophilin 3 protein-coding 105246427 XR_877372 Gm41717 - - 18 B3|18 predicted gene, 41717 ncRNA 73107 2900092N22Rik - - - RIKEN cDNA 2900092N22 gene protein-coding 105246497 Gm41781 - - 18|18 predicted gene, 41781 protein-coding 102637042 XR_386711 Gm33951 - - 19 C3|19 predicted gene, 33951 ncRNA 100418064 Gm18978 - - 18|18 E3 heterogeneous nuclear ribonucleoprotein D-like pseudogene pseudo 258287 Mm.377416 NM_146290 ENSMUSG00000050613 Olfr125 MOR218-8 - 17|17 B1 olfactory receptor 125 protein-coding 52604 D13Ertd324e - - 13 50.47 cM DNA segment, Chr 13, ERATO Doi 324, expressed unknown 72019 1500005C15Rik - - 3|3 RIKEN cDNA 1500005C15 gene protein-coding 102634993 Mm.211925 XR_001780544 Gm32442 - - 12 A1.1|12 predicted gene, 32442 ncRNA 665931 Mm.341719 NR_038063 Rplp2-ps1 Gm7852 - 12 C3|12 ribosomal protein, large P2, pseudogene 1 pseudo 57740 Mm.65336 NM_021302 ENSMUSG00000015981 Stk32c PKE|Pkek|YANK3 - 7|7 F4 serine/threonine kinase 32C protein-coding 108168002 XR_001780619 Gm46352 - - 12 C1|12 predicted gene, 46352 ncRNA 18663 Mm.717 NM_031190 ENSMUSG00000031233 Pgk2 Pgk-2|Tcp-2 - 17 B2|17 19.44 cM phosphoglycerate kinase 2 protein-coding 624191 Gm6482 EG624191 - 14|14 B predicted gene 6482 protein-coding 60594 Mm.476990 NM_021894 ENSMUSG00000054083 Capn12 CANP 12 - 7|7 B1 calpain 12 protein-coding 75324 Mm.410805 4930562D21Rik - - 9|9 RIKEN cDNA 4930562D21 gene protein-coding 100042797 Gm4037 - - 14|14 C3 ribosomal protein S2 pseudogene pseudo 105245674 XR_874184 Gm41093 - - 14 A1|14 predicted gene, 41093 ncRNA 493037 Cd8ts1 - - 5 24.07 cM CD8 T cell subset 1 unknown 102635789 XR_381232 Gm33037 - - 12 A1.1|12 predicted gene, 33037 ncRNA 14675 Mm.313181 NM_008137 ENSMUSG00000024697 Gna14 AU023208 - 19 A|19 11.29 cM guanine nucleotide binding protein, alpha 14 protein-coding 630347 Ighvhs107.a3.106 - - 12|12 Ig heavy chain V region VHS107.a3.106 other 61562 DXMit100 - - X 78.83 cM DNA segment, Chr X, Massachusetts Institute of Technology 100 unknown 664814 Gm7352 EG664814 - 14 A3|14 ribosomal protein L3 pseudogene pseudo 73423 Mm.396228 1700058M13Rik - - 13|13 B1 RIKEN cDNA 1700058M13 gene ncRNA 102636768 Gm33748 - - 17|17 predicted gene, 33748 ncRNA 102637637 LOC102637637 - - 17 B3 serine palmitoyltransferase small subunit A pseudogene pseudo 100040572 Mm.278873 NR_046069 Gm2848 - - 13 A5|13 predicted gene 2848 ncRNA 60986 D19Mit1 - - 19 50.32 cM DNA segment, Chr 19, Massachusetts Institute of Technology 1 unknown 626082 Mm.428099 NR_040557 ENSMUSG00000103428 Gm20754 - - 3|3 E3 predicted gene, 20754 ncRNA 102631522 Gm29120 - - Y|Y predicted gene 29120 protein-coding 52118 Mm.227506 NM_027514 ENSMUSG00000040511 Pvr 3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5 - 7 A3|7 9.95 cM poliovirus receptor protein-coding 100039281 Gm10250 - - 15|15 A1 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d pseudogene pseudo 102467392 n-TWcca3 n-Tw3 - 13 A3.1|13 nuclear encoded tRNA trytophan 3 (anticodon CCA) tRNA 102467342 n-TKctt4 n-Tk4 - 9 A2|9 nuclear encoded tRNA lysine 4 (anticodon CTT) tRNA 98174 T25620 - - - expressed sequence T25620 unknown 102636746 XR_381243 Gm33734 - - 12 A1.1|12 predicted gene, 33734 ncRNA 74762 Mm.40901 NM_001081160 ENSMUSG00000043557 Mdga1 1200011I03Rik|GPIM|Mamdc3 - 17|17 A3.3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 385316 Gm5379 EG385316 - X|X A1.1 voltage-dependent anion channel 1 pseudogene pseudo 83766 Mm.31646 NM_031404 ENSMUSG00000029712 Actl6b Actl6|ArpNa|Baf53b - 5|5 G2 actin-like 6B protein-coding 53662 D4Mc1 D4McC1 - - DNA segment, Chr 4, McClelland 1 unknown 70466 Mm.45785 NM_181589 ENSMUSG00000048327 Ckap2l 2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm - 2|2 F1 cytoskeleton associated protein 2-like protein-coding 665522 Rps12-ps15 EG665522|Gm7671 - X|X E3 ribosomal protein S12, pseudogene 15 pseudo 230098 Mm.331567 NM_001013377 ENSMUSG00000051517 Arhgef39 E130306D19Rik - 4|4 A5 Rho guanine nucleotide exchange factor (GEF) 39 protein-coding 105245367 XR_873174 Gm11337 - - 13 A3.1|13 9.93 cM predicted gene 11337 ncRNA 18632 Mm.20901 NM_011069 ENSMUSG00000028102 Pex11b PEX11beta|Pex11pbeta - 3|3 F2.1 peroxisomal biogenesis factor 11 beta protein-coding 353344 Mm.184937 NM_181753 ENSMUSG00000043972 Opn5 Gpr136|Neuropsin|PGR12|TMEM13 - 17|17 B3 opsin 5 protein-coding 78112 Mm.401935 NR_040629 ENSMUSG00000099933 4930452N14Rik - - 1|1 G3 RIKEN cDNA 4930452N14 gene ncRNA 52777 D17Wsu117e - - - DNA segment, Chr 17, Wayne State University 117, expressed unknown 106618 Mm.35470 NM_134124 ENSMUSG00000073434 Wdr90 3230401M21Rik|AI551153|mKIAA1924 - 17|17 A3.3 WD repeat domain 90 protein-coding 57355 Mm.358682 NM_020609 ENSMUSG00000031022 BC051019 AA571491|D7H11orf16|ICRFP703B1614Q5.5 - 7|7 E3 cDNA sequence BC051019 protein-coding 102852 A130057A22Rik AA517123 - - RIKEN cDNA A130057A22 gene protein-coding 258557 Mm.377566 NM_146564 ENSMUSG00000059303 Olfr836 MOR152-3 - 9|9 A2 olfactory receptor 836 protein-coding 102638592 XR_373447 Gm35120 - - 1 C2|1 predicted gene, 35120 ncRNA 78632 Mm.243734 1700080C20Rik - - - RIKEN cDNA 1700080C20 gene protein-coding 102635750 XR_374802 Gm33010 - - 2 E1|2 predicted gene, 33010 ncRNA 268780 Mm.203208 NM_178748 ENSMUSG00000042961 Egflam 5930412K08|AU040377 - 15|15 A1 EGF-like, fibronectin type III and laminin G domains protein-coding 15294 Hmgb1-rs14 Hmg1-rs14 - - high mobility group box 1, related sequence 14 pseudo 54128 Mm.9699 NM_016881 ENSMUSG00000022711 Pmm2 AI585868|C86848 - 16|16 A1 phosphomannomutase 2 protein-coding 102640509 Gm36550 - - 13|13 predicted gene, 36550 ncRNA 320249 Mm.320725 NR_015593 ENSMUSG00000115432 D130009I18Rik - - 14|14 E2.3 RIKEN cDNA D130009I18 gene ncRNA 71567 Mm.278221 NM_027830 ENSMUSG00000058298 Mcm9 9030408O17Rik|Gm235|Mcmdc1 - 10|10 B3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 667437 Xlr3e-ps EG667437|Xlr3e - X|X A7.3 X-linked lymphocyte-regulated 3E, pseudogene pseudo 100009664 Mm.415439 NR_045876 F630206G17Rik - - 11|11 B1.1 RIKEN cDNA F630206G17 gene ncRNA 216867 Mm.289238 NM_153081 ENSMUSG00000040938 Slc16a11 AB041591|MCT 11|MNCb-2717 - 11|11 B3 solute carrier family 16 (monocarboxylic acid transporters), member 11 protein-coding 626834 Mm.389891 NM_001039042 ENSMUSG00000054046 Klk13 Egfbp-2|mGk-13 - 7|7 B3 kallikrein related-peptidase 13 protein-coding 102633708 Gm31468 - - 16|16 predicted gene, 31468 ncRNA 75995 Mm.46179 NR_138577 ENSMUSG00000097251 5033417F24Rik 6330419D11Rik - 1|1 D RIKEN cDNA 5033417F24 gene ncRNA 111339 Hoxc Hox-3|Hox-6 - 15 F1-F3|15 homeobox C cluster other 216643 Mm.99989 NM_146017 ENSMUSG00000020159 Gabrp - - 11|11 A4 gamma-aminobutyric acid (GABA) A receptor, pi protein-coding 667172 Gm8494 EG667172 - 5 G3|5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene pseudo 66251 Mm.258910 NM_025445 ENSMUSG00000054277 Arfgap3 0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1 - 15|15 E1 ADP-ribosylation factor GTPase activating protein 3 protein-coding 52389 Mm.39863 NM_177469 ENSMUSG00000025475 Adgra1 2900059M17Rik|D7Ertd680e|Gpr123 - 7 F4|7 84.89 cM adhesion G protein-coupled receptor A1 protein-coding 102633425 LOC102633425 - - 9 A1 aldose reductase pseudogene pseudo 237560 Mm.37320 NM_146242 ENSMUSG00000060187 Lrrc10 D330003I11Rik|Hrlrrp|Serdin1 - 10|10 D2 leucine rich repeat containing 10 protein-coding 546160 Mm.479756 XR_871269 Fbxw25 E330001B16Rik - 9|9 F2 F-box and WD-40 domain protein 25 unknown 64082 Mm.390856 NM_022318 ENSMUSG00000022803 Popdc2 AV006127|Pop2 - 16|16 B4 popeye domain containing 2 protein-coding 105246250 XR_876727 Gm41558 - - 17 A3.3|17 predicted gene, 41558 ncRNA 224487 Gm4829 EG224487 - 17|17 A1 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 pseudogene pseudo 100418352 Gm19156 - - 14|14 C1 nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene pseudo 102636219 XR_377682 Gm33348 - - 6 B3|6 predicted gene, 33348 ncRNA 102633645 Gm28844 - - Y|Y predicted gene 28844 ncRNA 77378 C030026M15Rik - - - RIKEN cDNA C030026M15 gene protein-coding 52316 D6Ertd318e - - 6 39.13 cM DNA segment, Chr 6, ERATO Doi 318, expressed unknown 62921 D10Mit253 - - 10 17.31 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 253 unknown 105244430 XR_879967 Gm40039 - - 11 B3|11 predicted gene, 40039 ncRNA 210148 Mm.243943 NM_144798 ENSMUSG00000024069 Slc30a6 9530029F08Rik|ZnT6 - 17|17 E2 solute carrier family 30 (zinc transporter), member 6 protein-coding 545184 Gm5812 EG545184 - 17|17 A1 predicted gene 5812 pseudo 22200 Mm.277626 NM_011666 ENSMUSG00000030061 Uba3 A830034N06Rik|AI256736|AI848246|AW546539|Ube1c - 6|6 D3 ubiquitin-like modifier activating enzyme 3 protein-coding 105247274 Gm42402 - - 7 B4|7 predicted gene, 42402 pseudo 105246140 XR_876182 Gm41477 - - 16 C3.1|16 predicted gene, 41477 ncRNA 435940 Mm.482057 NM_001166711 ENSMUSG00000095191 Gm5725 EG435940|Vmn1r136 - 7|7 A3 predicted gene 5725 protein-coding 100039302 Gm2147 - - 1 A1|1 motile sperm domain containing 1 pseudogene pseudo 94050 Ms10i MMS10-I - 19|19 minisatellite 10i detected by probe MMS10 other 105833 Mm.26205 NM_153518 ENSMUSG00000003354 Ccdc65 4933417K04Rik|AI428139|AU020178|NYD-SP28 - 15|15 F1 coiled-coil domain containing 65 protein-coding 226115 Mm.54119 NM_153520 ENSMUSG00000050121 Opalin Tmem10|Tmp10 - 19|19 C3 oligodendrocytic myelin paranodal and inner loop protein protein-coding 102637176 Mm.332343 NR_153822 Gm20052 Gm34055 - 5 20.21 cM|5 B3 predicted gene, 20052 ncRNA 100417664 Gm18748 - - 16|16 A3 U2 small nuclear ribonucleoprotein B pseudogene pseudo 100035221 Mlepq2 - - - M16 leptin QTL 2 unknown 108168535 XR_001782915 LOC108168535 - - Y C2 uncharacterized LOC108168535 ncRNA 83675 Mm.286834 NM_031397 ENSMUSG00000014329 Bicc1 Bic-C|bpk|jcpk - 10 B5.3|10 36.75 cM BicC family RNA binding protein 1 protein-coding 404194 Mm.213862 NM_205844 ENSMUSG00000059383 Gfral AY457637|Gral - 9|9 D GDNF family receptor alpha like protein-coding 546672 XR_385027 Gm5965 EG546672 - 16|16 C3.3 predicted gene 5965 unknown 97821 E030047P09Rik C81458 - - RIKEN cDNA E030047P09 gene protein-coding 105246034 Mm.462107 NM_177188 B430209F14Rik - - 15|15 F1 RIKEN cDNA B430209F14 gene ncRNA 85305 Mm.196544 NM_053092 ENSMUSG00000031948 Kars AA589550|AL024334|AL033315|AL033367|D8Ertd698e|D8Wsu108e|LysRS|mKIAA0070 - 8 E1|8 58.27 cM lysyl-tRNA synthetase protein-coding 72277 Mm.272766 NM_028180 ENSMUSG00000045350 1700030F18Rik FAM186A - 15|15 F1 RIKEN cDNA 1700030F18 gene protein-coding 244183 Mm.347647 NM_175648 ENSMUSG00000052749 Trim30b A530023O14Rik|Trim30-1 - 7|7 E3 tripartite motif-containing 30B protein-coding 62015 D6Mit352 - - 6 22.9 cM DNA segment, Chr 6, Massachusetts Institute of Technology 352 unknown 27733 D17Tu49c - - - DNA segment, Chr 17, Tubigen 49, C unknown 75483 Mm.660 NM_001039049 ENSMUSG00000043319 Cox8c 1700007F21Rik|COX8-3|COXVIII-3 - 12|12 E cytochrome c oxidase subunit VIIIc protein-coding 258128 Olfr405-ps1 Gm15874|MOR125-3P - 11|11 B5 olfactory receptor 405, pseudogene 1 pseudo 230027 Mm.5662 NM_172687 ENSMUSG00000028247 Coq3 4732433J24|C77934 - 4 A3|4 9.11 cM coenzyme Q3 methyltransferase protein-coding 22209 Mm.395649 NM_019668 ENSMUSG00000016308 Ube2a HHR6A|HR6A|Mhr6a - X|X A3.3 ubiquitin-conjugating enzyme E2A protein-coding 100043588 Gm4536 - - 7|7 A3 chromobox protein homolog 3 pseudogene pseudo 65256 Mm.27159 NM_023049 ENSMUSG00000021200 Asb2 1110008E15Rik - 12 E|12 52.9 cM ankyrin repeat and SOCS box-containing 2 protein-coding 100035588 Fmgty11 - - 14 56.16 cM femur geometry 11 unknown 74154 Mm.267353 NM_028789 ENSMUSG00000015127 Unkl 1300004G08Rik - 17|17 A3.3 unkempt family like zinc finger protein-coding 105246658 XR_878372 Gm41915 - - 1 D|1 predicted gene, 41915 ncRNA 258724 Mm.377657 NM_146729 ENSMUSG00000094347 Olfr784 MOR110-3 - 10|10 D3 olfactory receptor 784 protein-coding 100037283 Mm.426736 NM_001083938 ENSMUSG00000095687 Rnaset2a 0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2 - 17|17 A1 ribonuclease T2A protein-coding 61847 D1Mit411 - - 1 12.62 cM DNA segment, Chr 1, Massachusetts Institute of Technology 411 unknown 100041367 Gm3294 - - 6 A3.3|6 predicted gene 3294 protein-coding 111422 Mtv32 Mtv-32 - - mammary tumor virus locus 32 other 105246664 Gm41919 - - 1|1 predicted gene, 41919 ncRNA 108167518 XR_001778498 LOC108167518 - - 8 A1.1 uncharacterized LOC108167518 ncRNA 404238 Mm.377926 NM_207537 ENSMUSG00000070546 Mrgprb3 MrgB3 - 7|7 B4 MAS-related GPR, member B3 protein-coding 11685 Mm.274093 NM_145684 ENSMUSG00000018907 Alox12e 12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1 - 11 B3|11 42.99 cM arachidonate lipoxygenase, epidermal protein-coding 52019 D17Ertd589e - - 17 51.91 cM DNA segment, Chr 17, ERATO Doi 589, expressed unknown 77508 Mm.402783 9330118I20Rik - - 6|6 RIKEN cDNA 9330118I20 gene protein-coding 237636 Mm.212492 NM_207242 ENSMUSG00000020447 Npc1l1 9130221N23Rik|Gm243 - 11|11 A1 NPC1 like intracellular cholesterol transporter 1 protein-coding 61242 D3Mit1007 D1Mit283 - 3 25.47 cM DNA segment, Chr 3, Massachusetts Institute of Technology 1007 unknown 628268 Igkv2-109 Gm10878|he24 - 6|6 C1 immunoglobulin kappa variable 2-109 other 381337 Mm.17413 NM_027957 ENSMUSG00000046337 Fam178b 1700024G10Rik|Gm990 - 1|1 B family with sequence similarity 178, member B protein-coding 70558 Mm.243897 5730437C11Rik - - 3|3 RIKEN cDNA 5730437C11 gene unknown 235858 Gm392 - - 8|8 B2 predicted gene 392 pseudo 110430 Evi13 - - - ecotropic viral integration site 13 protein-coding 77437 9430087B13Rik - - 5|5 RIKEN cDNA 9430087B13 gene protein-coding 546096 Mm.252264 NR_131138 ENSMUSG00000110053 Gm29682 Gm45664 - 8|8 D3 predicted gene, 29682 ncRNA 211228 Mm.132939 NM_153074 ENSMUSG00000049988 Lrrc25 Mapa - 8|8 B3.3 leucine rich repeat containing 25 protein-coding 105245360 XR_873159 Gm40828 - - 13 A3.1|13 predicted gene, 40828 ncRNA 791329 Mm.327813 Gm9968 - - - predicted gene 9968 unknown 100503893 Gm19945 - - 15|15 35.44 cM predicted gene, 19945 protein-coding 382406 Mm.440656 NM_027740 ENSMUSG00000019952 Poc1b 4933430F16Rik|Wdr51b - 10|10 C3-D1 POC1 centriolar protein B protein-coding 626456 Gm6676 EG626456 - 14|14 A1 predicted gene 6676 protein-coding 68033 Mm.261064 NM_197980 ENSMUSG00000045438 Cox19 1810074D02Rik|2810437L13Rik - 5|5 G2 cytochrome c oxidase assembly protein 19 protein-coding 100532730 Mm.461541 NR_077233 C230037L18Rik - - 15 E3|15 44.94 cM RIKEN cDNA C230037L18 gene ncRNA 108169098 XM_017321259 Gm46934 - - 5 E3|5 predicted gene, 46934 protein-coding 102639518 XR_375199 LOC102639518 - - 2 H3 uncharacterized LOC102639518 ncRNA 636612 Gm7181 EG636612 - 5 B3|5 ubiquitin-conjugating enzyme E2 variant 1 pseudogene pseudo 12654 Mm.38274 NM_007695 ENSMUSG00000064246 Chil1 AW208766|Brp39|Chi3l1|Gp39 - 1 E4|1 58.15 cM chitinase-like 1 protein-coding 75458 Mm.269219 NM_029295 ENSMUSG00000054400 Cklf 1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1 - 8|8 D3 chemokine-like factor protein-coding 100035789 Mmtp2 - - 17 15.8 cM modifier of mammary tumor progression 2 unknown 55942 Mm.153684 NM_018820 ENSMUSG00000008384 Sertad1 1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1 - 7|7 A3 SERTA domain containing 1 protein-coding 68771 Mm.443351 NR_130982 1110058D11Rik - - 17|17 E1.1 RIKEN cDNA 1110058D11 gene ncRNA 109829 Ea4 Ea-4 - - erythrocyte antigen 4 protein-coding 105242986 XR_869770 Gm39044 - - 7 D3|7 predicted gene, 39044 ncRNA 100861713 Gm21156 - - Y A1|Y predicted gene, 21156 pseudo 26457 Mm.38165 NM_011977 ENSMUSG00000031808 Slc27a1 FATP1|Fatp - 8|8 B3.3 solute carrier family 27 (fatty acid transporter), member 1 protein-coding 100545 AA617259 - - - expressed sequence AA617259 unknown 667962 Mm.422667 NM_001177405 ENSMUSG00000089756 Zfp966 Gm8898 - 2|2 H4 zinc finger protein 966 protein-coding 626009 Mm.451 NR_028277 Gm6644 Akr1b3p|EG626009 - 1|1 C1.2 Akr1b3 pseudogene pseudo 17346 Mm.209327 NM_021461 ENSMUSG00000028708 Mknk1 2410048M24Rik|Mnk1 - 4|4 D1 MAP kinase-interacting serine/threonine kinase 1 protein-coding 239833 Mm.131951 NM_172823 ENSMUSG00000022802 Lmln 5330415H22Rik|AI465495 - 16|16 B3 leishmanolysin-like (metallopeptidase M8 family) protein-coding 100124659 Trbv2 Gm16752|Tcrb-V4 - 6 19.12 cM|6 B1 T cell receptor beta, variable 2 other 102640909 Gm36861 - - 7|7 predicted gene, 36861 ncRNA 108168392 XR_001782499 Gm46634 - - 18 E1|18 predicted gene, 46634 ncRNA 111224 Hmgb1-rs9 Hmg1-rs9 - - high mobility group box 1, related sequence 9 pseudo 100041400 NM_001099322 Gm12226 - - 11 B1.3|11 oxidative stress responsive 1 pseudogene pseudo 102636366 XR_388568 Gm33453 - - 11 A4|11 predicted gene, 33453 ncRNA 634967 Tgif2-ps2 Gm7148 - 17 B2|17 TGFB-induced factor homeobox 2, pseudogene 2 pseudo 14034 exf ex - - exfoliative unknown 234733 Mm.482176 NM_172284 ENSMUSG00000033658 Ddx19b 2810457M08Rik|4921519L13Rik|AW260119 - 8|8 E1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b protein-coding 100504237 Gm20127 - - 14|14 57.86 cM splicing factor, arginine/serine-rich 13A-like pseudo 225164 Mm.21500 NM_144860 ENSMUSG00000024294 Mib1 DIP-1|E430019M12Rik|Mib|mKIAA1323 - 18|18 A1 mindbomb E3 ubiquitin protein ligase 1 protein-coding 105245262 XR_871951 Gm40740 - - 10 C2|10 predicted gene, 40740 ncRNA 62131 D13Mit47 - - 13 54.93 cM DNA segment, Chr 13, Massachusetts Institute of Technology 47 unknown 434127 Gm5586 EG434127 - 7|7 A2 40S RIBOSOMAL PROTEIN S3A (V-FOS TRANSFORMATION EFFECTOR PROTEIN) pseudo 100417116 Gm14943 - - X|X E3 integrator complex subunit 3 pseudogene pseudo 27613 D0Hgu4 - - - DNA segment, Human Genetics Unit 4 unknown 70828 4633401B06Rik - - 3|3 RIKEN cDNA 4633401B06 gene protein-coding 105243677 XR_882299 Gm39508 - - X A4|X predicted gene, 39508 ncRNA 101896 Mm.428412 AW743092 - - - expressed sequence AW743092 unknown 80287 Mm.284059 NM_030255 ENSMUSG00000009585 Apobec3 Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3 - 15 E1|15 37.85 cM apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 protein-coding 217645 Gm4806 EG217645 - 12|12 C1 ligatin pseudogene pseudo 493116 Angfq1 - - 4 13.99 cM angiogenesis due to FGF2 QTL 1 unknown 77389 Mm.235018 C030032F19Rik - - 7|7 D3 RIKEN cDNA C030032F19 gene protein-coding 72935 Mm.205045 NM_134059 ENSMUSG00000021494 Ddx41 2900024F02Rik|AA958953|ABS|AI324246 - 13|13 B1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 protein-coding 101048 AA517576 - - - expressed sequence AA517576 unknown 383592 XM_017314039 ENSMUSG00000087236 Kif28 Gm1305 - 1|1 H4 kinesin family member 28 protein-coding 100502629 Gm12726 - - 4|4 49.41 cM 60S ribosomal protein L15-like pseudo 100416994 Gm18352 - - 7|7 B4 MAS-related GPR, member A4 pseudogene pseudo 67808 Mm.288737 NM_026388 ENSMUSG00000029030 Tprgl 1200015A19Rik|Svap30|Tprg1l|mover - 4|4 E2 transformation related protein 63 regulated like protein-coding 67287 Mm.439943 NM_029922 ENSMUSG00000025237 Parp6 1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6 - 9|9 B poly (ADP-ribose) polymerase family, member 6 protein-coding 77791 Mm.333574 A930003G23Rik - - 7|7 RIKEN cDNA A930003G23 gene protein-coding 105243211 Gm39192 - - 8|8 predicted gene, 39192 ncRNA 102640934 XR_389538 Gm36880 - - 5 F|5 predicted gene, 36880 ncRNA 381308 Mm.490248 NM_001033450 ENSMUSG00000026536 Ifi211 A730048F03|Ifi205b|Mnda|ifi-205-B - 1|1 H3 interferon activated gene 211 protein-coding 102640114 Gm36261 - - Y|Y predicted gene, 36261 ncRNA 112335 Lore2 - - - loss of righting induced by ethanol 2 unknown 108168150 Gm46449 - - 14 B|14 predicted gene, 46449 pseudo 100036387 Dbsq5 - - - diabetes susceptibility QTL 5 unknown 97072 C79256 - - - expressed sequence C79256 unknown 102639815 Mm.403720 XR_877302 Gm36037 - - 18 B1|18 predicted gene, 36037 ncRNA 105244092 XR_866003 Gm39766 - - 2 A3|2 predicted gene, 39766 ncRNA 67211 Mm.260782 NM_026034 ENSMUSG00000038525 Armc10 2810037C14Rik|Svh - 5|5 A3 armadillo repeat containing 10 protein-coding 100526520 NR_037239 ENSMUSG00000092972 Mir3078 mmu-mir-3078 - 14 D1|14 33.77 cM microRNA 3078 ncRNA 81630 Mm.482096 NM_020625 ENSMUSG00000051390 Zbtb22 1110008J20Rik|AI265210|AI415166|Bing1|Zfp297 - 17|17 B1 zinc finger and BTB domain containing 22 protein-coding 77167 8030476L19Rik - - 15|15 RIKEN cDNA 8030476L19 gene protein-coding 381070 Casp16-ps Casp16|EG381070|Gm5146 - 17|17 A3.3 caspase 16, apoptosis-related cysteine peptidase, pseudogene pseudo 18509 Mm.218760 NM_011039 ENSMUSG00000028736 Pax7 Pax-7 - 4 D3|4 70.83 cM paired box 7 protein-coding 16536 Mm.40615 NM_010611 ENSMUSG00000016346 Kcnq2 HNSPC|KQT2|Nmf134 - 2 H4|2 103.57 cM potassium voltage-gated channel, subfamily Q, member 2 protein-coding 100035645 Abfw3 - - - abdominal fat weight 3 unknown 328231 Mm.227476 NM_177808 Gm5082 A030008J09|EG328231 - 13 A4|13 predicted gene 5082 protein-coding 53302 561O14T7 - - - DNA segment, 561O14T7 (Roswell Park) unknown 105243782 Gm39563 - - 5|5 predicted gene, 39563 ncRNA 102635469 XR_375016 Gm38479 - - 2 F3|2 predicted gene, 38479 ncRNA 52737 D13Uth6e - - - DNA segment, Chr 13, University of Utah, expressed 6 unknown 100035070 Tailq5 - - - tail length QTL 5 unknown 59057 Mm.417427 NM_021559 ENSMUSG00000051469 Zfp24 3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24 - 18|18 A2 zinc finger protein 24 protein-coding 79565 Mm.34235 NM_024479 ENSMUSG00000040557 Mettl27 AW492986|BC002286|Wbscr27 - 5|5 G2 methyltransferase like 27 protein-coding 242894 Mm.150319 NM_001004365 ENSMUSG00000056367 Actr3b 9630005C02|ARP11|AW047569|Arp3b|Arp3beta - 5|5 B1 ARP3 actin-related protein 3B protein-coding 105243649 XR_878039 Gm39488 - - X A1.1|X predicted gene, 39488 ncRNA 18517 pc - - - phocomelic unknown 21005 T(1;13)1Wa T1Wa - - reciprocal translocation, Chr 1 and 13, Wageningen 1 other 108167848 Mm.339511 XM_017314865 ENSMUSG00000072915 Gm12258 - - 11|11 B1.3 predicted gene 12258 protein-coding 100041345 XM_017318757 ENSMUSG00000100535 Gm20870 - - Y|Y C3 predicted gene, 20870 protein-coding 102640 AL022988 - - - expressed sequence AL022988 unknown 18536 Mm.117896 NM_023662 ENSMUSG00000031592 Pcm1 2600002H09Rik|9430077F19Rik|C030044G17Rik - 8 A4|8 23.89 cM pericentriolar material 1 protein-coding 100043950 Gm14516 - - X|X A1.2 predicted gene 14516 pseudo 102640549 XR_384847 Gm36585 - - 16 B4|16 predicted gene, 36585 ncRNA 78043 Mm.398313 NR_045462 4930548J01Rik 1700113K09Rik - 17|17 A1 RIKEN cDNA 4930548J01 gene ncRNA 77426 9430099H24Rik - - 3|3 RIKEN cDNA 9430099H24 gene protein-coding 30825 DXChri5 - - - DNA segment, Chr X, Children's Hospital Research Institute 5 unknown 100043657 Gm4573 - - 14 D1|14 high mobility group nucleosomal binding domain 2, pseudogene pseudo 71592 Mm.192094 NM_175170 ENSMUSG00000040596 Pogk 9130401E23Rik|BASS2|mKIAA1513 - 1|1 H2.3 pogo transposable element with KRAB domain protein-coding 71386 Mm.389133 NM_027778 ENSMUSG00000101315 Krtap28-13 5530401N06Rik - 1|1 C5 keratin associated protein 28-13 protein-coding 105246728 XR_878606 Gm41970 - - 1 G2|1 predicted gene, 41970 ncRNA 111720 Mpmv35 Mpmv-35 - - modified polytropic murine leukemia virus 35 other 116878 Pgia3 Pgia21|Pgia38 - 7 48.36 cM proteoglycan induced arthritis 3 unknown 100042761 Mm.484910 NM_001163731 ENSMUSG00000095251 Gm10697 - - 3 F2.1|3 predicted gene 10697 protein-coding 227733 Mm.78923 NM_198191 ENSMUSG00000046854 Pip5kl1 BC028795 - 2|2 B phosphatidylinositol-4-phosphate 5-kinase-like 1 protein-coding 73098 3110005M07Rik - - 2|2 RIKEN cDNA 3110005M07 gene protein-coding 791356 Mm.400472 Gm9944 - - - predicted gene 9944 unknown 102636110 LOC102636110 - - 13 B3 zinc finger protein 431-like pseudo 329387 Mm.125817 NR_130173 ENSMUSG00000087461 C230014O12Rik - - 2|2 B RIKEN cDNA C230014O12 gene ncRNA 69596 Mm.2937 NM_027129 ENSMUSG00000068264 Ap5s1 0610038L13Rik|2310035K24Rik|AW060727|sigma5 - 2|2 F1 adaptor-related protein 5 complex, sigma 1 subunit protein-coding 105242585 Gm38756 - - 5|5 predicted gene, 38756 ncRNA 780894 Ighv1-45 - - 12|12 F2 immunoglobulin heavy variable V1-45 pseudo 100503958 Gm19987 - - 9 C|9 37.3 cM 60S ribosomal protein L12-like pseudo 105243458 Gm39374 - - 9|9 predicted gene, 39374 ncRNA 100036066 Lvrq7 - - - liver weight QTL 7 unknown 668357 Mm.422619 NM_001142690 ENSMUSG00000067561 Dmrtc1c2 - - X|X D DMRT-like family C1c2 protein-coding 112163561 AU018577 - - - expressed sequence AU018577 protein-coding 214663 Mm.266264 NM_181328 ENSMUSG00000021265 Slc25a29 C030003J19Rik|CACL|mCACL - 12|12 F1 solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29 protein-coding 50876 Mm.291880 NM_016711 ENSMUSG00000032186 Tmod2 N-Tmod|NTMOD - 9 D|9 42.31 cM tropomodulin 2 protein-coding 110734 Zfp91-rs1 - - - zinc finger protein 91, related sequence 1 protein-coding 78698 Mm.348587 C330025O08Rik - - 5|5 RIKEN cDNA C330025O08 gene protein-coding 402746 Mm.339788 A230054M22Rik - - 11|11 RIKEN cDNA A230054M22 gene protein-coding 61097 D1Mit488 - - 1 45.12 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 488 unknown 100042513 Gm3878 - - 1|1 E4 predicted gene 3878 pseudo 109280025 LOC109280025 Mm192 - - VISTA enhancer mm192 biological-region 100035932 Pltq1 - - - platelet quantitative locus 1 unknown 635871 Mm.390787 XR_002061 ENSMUSG00000116424 Gm7167 EG635871 - 15 E3|15 predicted gene 7167 unknown 100040067 Mm.76877 Gm2582 - - 15 D1|15 predicted gene 2582 protein-coding 109280088 LOC109280088 Mm795 - - VISTA enhancer mm795 biological-region 111594 Pmv48 Pmv-48 - - polytropic murine leukemia virus 48 other 102635053 Gm16276 - - 17|17 29.11 cM predicted gene 16276 protein-coding 102639840 XR_388160 Gm36059 - - 8 E1|8 predicted gene, 36059 ncRNA 108168232 Gm46510 - - 15 B3.1|15 U6 snRNA-associated Sm-like protein LSm3 pseudogene pseudo 381022 Mm.264889 NM_001033276 ENSMUSG00000048154 Kmt2d ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4 - 15|15 F1 lysine (K)-specific methyltransferase 2D protein-coding 100042393 Gm3821 - - 13|13 A3.1 predicted gene 3821 pseudo 26965 Mm.87611 NM_012042 ENSMUSG00000029686 Cul1 Cul-1 - 6|6 B2.3 cullin 1 protein-coding 108168287 XR_001781926 Gm46551 - - 16 B4|16 predicted gene, 46551 ncRNA 75883 Mm.108996 XR_373301 ENSMUSG00000101223 4930568A12Rik - - 1|1 B RIKEN cDNA 4930568A12 gene unknown 19653 Mm.426069 NM_009032 ENSMUSG00000094936 Rbm4 4921506I22Rik|Lark1|Mlark|Rbm4a|lark - 19|19 A RNA binding motif protein 4 protein-coding 102607 Mm.35084 NM_028874 ENSMUSG00000031993 Snx19 3526401K03Rik|AI195321|AI848208|mKIAA0254 - 9|9 A4 sorting nexin 19 protein-coding 329514 Mm.207315 NM_177848 ENSMUSG00000074805 Il1bos 9430083I22|Gm14047 - 2 F1|2 interleukin 1 beta, opposite strand ncRNA 100416167 Gm17953 - - 3|3 E3 predicted gene, 17953 pseudo 108168838 XR_001783624 Gm46788 - - 2 H3|2 predicted gene, 46788 ncRNA 62476 D18Mit230 - - 18 10.6 cM DNA Segment, Chr 18, Massachusetts Institute of Technology 230 unknown 75723 Mm.159552 NM_001081395 ENSMUSG00000013076 Amotl1 2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155 - 9|9 A2 angiomotin-like 1 protein-coding 100035821 Espq4 - - - embryo survival preimplantation QTL 4 unknown 69876 Mm.226820 NM_175152 ENSMUSG00000039759 Thap3 2010013E08Rik|2210418H06Rik - 4|4 E2 THAP domain containing, apoptosis associated protein 3 protein-coding 93908 D16Jhu46 85P10.T7 - - DNA segment, Chr 16, Johns Hopkins University 46 unknown 105243477 Gm39390 - - 9|9 predicted gene, 39390 ncRNA 76931 1700016C23Rik - - - RIKEN cDNA 1700016C23 gene protein-coding 105243937 XR_865460 Gm39650 - - 1 C2|1 predicted gene, 39650 ncRNA 624403 Gm12626 - - 11|11 B2 poly(A) binding protein, cytoplasmic 4 pseudogene pseudo 102635108 XR_376887 Gm32528 - - 5 B3|5 predicted gene, 32528 ncRNA 102636855 XR_376152 Gm33809 - - 3 H1|3 predicted gene, 33809 ncRNA 100861474 NR_046122 ENSMUSG00000095966 n-R5s105 Rn5s5 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 105 rRNA 103347 Mm.442309 AU019202 - - - expressed sequence AU019202 unknown 72154 Mm.20263 NM_028130 ENSMUSG00000036898 Zfp157 2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1 - 5|5 G2 zinc finger protein 157 protein-coding 100038716 Gm10623 - - - predicted gene 10623 unknown 66772 Mm.116960 NM_025758 ENSMUSG00000038997 Asb17 4933436O18Rik - 3|3 H3 ankyrin repeat and SOCS box-containing 17 protein-coding 12555 Mm.1976 NM_007662 ENSMUSG00000031962 Cdh15 AI323380|Cdh14|Mcad - 8 E1|8 71.99 cM cadherin 15 protein-coding 109279858 LOC109279858 Mm39 - - VISTA enhancer mm39 biological-region 62311 D1Mit273 - - 1 84.79 cM DNA segment, Chr 1, Massachusetts Institute of Technology 273 unknown 66979 Mm.195753 NM_025882 ENSMUSG00000030042 Pole4 2400007P05Rik|5830430F06Rik - 6|6 C3 polymerase (DNA-directed), epsilon 4 (p12 subunit) protein-coding 68526 Mm.451014 NM_001080707 ENSMUSG00000041762 Gpr155 1110017O10Rik|DEPDC3|F730029F15Rik|PGR22 - 2|2 C3 G protein-coupled receptor 155 protein-coding 668592 Mm.452801 XR_105855 Gm9258 EG668592 - 17|17 D predicted gene 9258 ncRNA 17537 Mm.360516 NM_008627 ENSMUSG00000041420 Meis3 AI573393|Mrg2 - 7 A2|7 8.76 cM Meis homeobox 3 protein-coding 625276 Gm6569 EG625276|Gm1598 - 15|15 D3 predicted gene 6569 protein-coding 105243461 XR_870939 ENSMUSG00000111633 Gm39377 - - 9 E1|9 predicted gene, 39377 ncRNA 62874 D11Mit264 - - 11 62.28 cM DNA segment, Chr 11, Massachusetts Institute of Technology 264 unknown 102637392 XR_872685 Gm34215 - - 12 A3|12 predicted gene, 34215 ncRNA 668716 Gm9316 EG668716 - 17 E2|17 F-box protein 34 pseudogene pseudo 381406 Mm.330785 NM_001007581 ENSMUSG00000039725 Trp53rka 2810408M09Rik - 2|2 H3 transformation related protein 53 regulating kinase A protein-coding 109861 Aft - - - abnormal feet and tail unknown 623583 Olfr1293-ps MOR245-24P|Olfr1293 - 2|2 E3 olfactory receptor 1293, pseudogene pseudo 100035051 Dbts2 - - - diabetes 2 unknown 102636413 Gm21820 - - Y|Y predicted gene, 21820 pseudo 631990 Mm.401324 NM_001166658 ENSMUSG00000090546 Cdr1 100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077 - X A6|X 34.33 cM cerebellar degeneration related antigen 1 protein-coding 102640269 XR_387907 Gm36380 Gm45450 - 8 C5|8 predicted gene, 36380 ncRNA 258680 Mm.271521 NM_146685 ENSMUSG00000095640 Olfr1434 MOR214-4|Olfr1433|Olfr1433-ps1 - 19|19 A olfactory receptor 1434 protein-coding 21916 Mm.249594 NM_021883 ENSMUSG00000028328 Tmod1 E-Tmod|Tmod - 4 B1|4 24.49 cM tropomodulin 1 protein-coding 100126098 Fl2sa - - - fatty liver 2 in SMXA unknown 105247291 XR_882348 LOC105247291 - - - uncharacterized LOC105247291 ncRNA 27752 D1Sta10 - - - DNA segment, Chr 1, Philip Stanier 10 unknown 71040 Mm.488105 XR_387941 ENSMUSG00000110427 4933406B17Rik Gm45852 - 8|8 C5 RIKEN cDNA 4933406B17 gene unknown 22164 Mm.4994 NM_009452 ENSMUSG00000026700 Tnfsf4 Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34 - 1 H2.1|1 69.75 cM tumor necrosis factor (ligand) superfamily, member 4 protein-coding 75032 4930488N15Rik - - 8|8 RIKEN cDNA 4930488N15 gene protein-coding 668206 Gm12617 - - 11|11 B2 Uba52 pseudogene pseudo 100034953 Bsbob5 - - 15 17.41 cM BSB obesity 5 unknown 102633618 XR_378826 Gm31402 - - 8 A2|8 predicted gene, 31402 ncRNA 258822 Mm.223248 NM_146825 ENSMUSG00000059623 Olfr39 MOR144-1 - 9 A3|9 7.51 cM olfactory receptor 39 protein-coding 18828 Mm.10306 NM_008880 ENSMUSG00000032372 Plscr2 - - 9|9 E3.3 phospholipid scramblase 2 protein-coding 434253 Rpl21-ps13 EG434253|Gm5603 - 7|7 F4 ribosomal protein L21-ps13 pseudo 109032 Mm.335802 NM_030194 ENSMUSG00000070034 Sp110 5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1 - 1|1 C5 Sp110 nuclear body protein protein-coding 100418288 Skiv2l-ps1 Ski2w2|slp - 17|17 B1 superkiller viralicidic activity 2-like (S. cerevisiae), pseudogene 1 pseudo 101056237 Gm29806 - - 17|17 predicted gene, 29806 pseudo 102637273 XR_390579 Gm34133 - - 4 B2|4 predicted gene, 34133 ncRNA 102634472 Gm32049 - - 15|15 predicted gene, 32049 ncRNA 11932 Mm.235204 NM_013415 ENSMUSG00000041329 Atp1b2 Amog|Atpb-2 - 11 B3|11 42.86 cM ATPase, Na+/K+ transporting, beta 2 polypeptide protein-coding 382792 Gm5199 EG382792|Ppia-ps13_1124.1 - 13|13 C3 peptidylprolyl isomerase A (Ppia) pseudogene pseudo 385246 Gm5377 EG385246 - Y|Y A1 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor pseudogene pseudo 14225 Mm.278458 NM_008019 ENSMUSG00000032966 Fkbp1a FKBP12|Fkbp|Fkbp1 - 2|2 G3 FK506 binding protein 1a protein-coding 331392 Mm.23126 NM_198633 ENSMUSG00000051537 Gm5124 EG331392 - X A2|X nucleolar and coiled-body phosphoprotein 1 pseudogene pseudo 674202 Gm13921 - - 2|2 E2 predicted gene 13921 pseudo 52367 D8Ertd575e - - 8 46.07 cM DNA segment, Chr 8, ERATO Doi 575, expressed unknown 68152 Mm.240265 NM_026583 ENSMUSG00000058503 Fam133b 2900022K02Rik|5830415L20Rik - 5 A1|5 family with sequence similarity 133, member B protein-coding 67834 Mm.279195 NM_029573 ENSMUSG00000032279 Idh3a 1110003P10Rik|1500012E04Rik|AA407078|AI316514 - 9|9 A5.3 isocitrate dehydrogenase 3 (NAD+) alpha protein-coding 69024 Mm.329629 NM_026912 ENSMUSG00000024787 Snx15 1500032B08Rik|E130013C21Rik - 19|19 A sorting nexin 15 protein-coding 27979 Mm.21671 NM_133916 ENSMUSG00000056076 Eif3b AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1 - 5 G2|5 78.97 cM eukaryotic translation initiation factor 3, subunit B protein-coding 102633496 XR_381770 Gm31308 - - 12 D1|12 predicted gene, 31308 ncRNA 109559 Scr - - - scruffy unknown 17653 Ms6hm PC-1 - - minisatellite 6 hypermutable other 100169871 Mm.437589 XM_011242639 Gm10910 - - 9 A4|9 predicted gene 10910 protein-coding 77594 Mm.329924 NR_045318 ENSMUSG00000097632 4930552P12Rik - - 19|19 D2 RIKEN cDNA 4930552P12 gene ncRNA 85139 D9Mit260 - - 9 37.87 cM DNA segment, Chr 9, Massachusetts Institute of Technology 260 unknown 71838 Mm.5348 NM_027949 ENSMUSG00000021902 Phf7 1700006H01Rik|1700010P14Rik|AI427892|AW555949 - 14|14 B PHD finger protein 7 protein-coding 16182 Mm.253664 NM_008365 ENSMUSG00000026070 Il18r1 Il18ralpha|Il1rrp - 1|1 B interleukin 18 receptor 1 protein-coding 70083 Mm.41925 NM_133719 ENSMUSG00000002274 Metrn 1810034B16Rik|EyeLinc16|Hyrac - 17|17 A3.3 meteorin, glial cell differentiation regulator protein-coding 100040305 Mm.390468 Gm2701 - - 12 E|12 predicted gene 2701 unknown 606543 Gm6070 EG606543|Ppia-ps8_36.1 - 8|8 A1.1 peptidylprolyl isomerase A pseudogene 8_36.1 pseudo 102640779 Mm.394084 NM_175248 2900052L18Rik - - 11|11 E2 RIKEN cDNA 2900052L18 gene ncRNA 286968 Mm.446076 6530437J22Rik - - 7|7 RIKEN cDNA 6530437J22 gene protein-coding 105242426 Gm38696 - - 15|15 predicted gene, 38696 pseudo 102636603 XR_386127 Gm33621 - - 18 A2|18 predicted gene, 33621 ncRNA 668848 Gm9400 EG668848 - 17|17 E4 post-GPI attachment to proteins 2 pseudogene pseudo 100043172 XR_140938 Gm10080 - - 9 A5.2|9 predicted gene 10080 pseudo 102633082 Gm30995 - - 12|12 predicted gene, 30995 ncRNA 75565 Mm.45686 NM_029339 ENSMUSG00000030714 Sgf29 1700023O11Rik|9530025I05Rik|Ccdc101 - 7|7 F3 SAGA complex associated factor 29 protein-coding 100503976 Gm19994 - - 10 B2|10 24.46 cM predicted gene, 19994 pseudo 102636314 XR_380549 Gm33416 - - 10 B5.3|10 predicted gene, 33416 ncRNA 19011 Mm.1001 NM_008902 ENSMUSG00000022468 Endou Pp11r|Tcl-30 - 15 F1|15 53.7 cM endonuclease, polyU-specific protein-coding 328436 Mm.246762 NR_153767 ENSMUSG00000114744 Gm38409 E030037F02 - 14|14 D1 predicted gene, 38409 ncRNA 101055648 Gm29705 - - 8 B3.3|8 predicted gene, 29705 pseudo 72431 Mm.158821 NM_028236 ENSMUSG00000030472 Ceacam18 2010110O04Rik - 7|7 B3 carcinoembryonic antigen-related cell adhesion molecule 18 protein-coding 11364 Mm.10530 NM_007382 ENSMUSG00000062908 Acadm AU018656|MCAD - 3 H3|3 78.77 cM acyl-Coenzyme A dehydrogenase, medium chain protein-coding 100036369 Raml1 - - 18 6.36 cM radiation induced acute myeloid leukemia 1 unknown 69301 Mm.144202 NM_027028 ENSMUSG00000055826 Tescl 1700008P20Rik - 7|7 A3 tescalcin-like protein-coding 12235 Mm.2185 NM_009772 ENSMUSG00000027379 Bub1 AL022991|Bub1a|C80208|D2Xrf87 - 2 F1|2 62.1 cM BUB1, mitotic checkpoint serine/threonine kinase protein-coding 78463 1700065F09Rik - - 2|2 RIKEN cDNA 1700065F09 gene protein-coding 105246385 XR_877254 Gm41679 - - 18 A2|18 predicted gene, 41679 ncRNA 219022 Mm.276362 NM_177625 ENSMUSG00000006288 Ttc5 - - 14|14 C1 tetratricopeptide repeat domain 5 protein-coding 103142 Mm.235814 NM_153133 ENSMUSG00000056148 Rdh9 AI121090|Crad3 - 10|10 D3 retinol dehydrogenase 9 protein-coding 56388 Mm.301900 NM_019792 ENSMUSG00000029630 Cyp3a25 AI327008 - 5 G2|5 85.17 cM cytochrome P450, family 3, subfamily a, polypeptide 25 protein-coding 73594 1700112L15Rik - - 8|8 RIKEN cDNA 1700112L15 gene protein-coding 330470 Mm.291102 NM_001033418 ENSMUSG00000074378 Bsph1 Gm767 - 7|7 A1 binder of sperm protein homolog 1 protein-coding 101985 Mm.29069 NM_133954 ENSMUSG00000031792 Usb1 AA960436 - 8|8 C5 U6 snRNA biogenesis 1 protein-coding 100526531 NR_037216 ENSMUSG00000096893 Mir344d-2 mir-344d-2|mmu-mir-344d-2 - 7 C|7 34.27 cM microRNA 344d-2 ncRNA 406223 Mm.475602 NM_001003670 ENSMUSG00000064232 Gm5414 EG406223|Kb14 - 15|15 F2 predicted gene 5414 protein-coding 102640008 Mm.428778 XR_001779396 Gm28800 - - 1 E3|1 predicted gene 28800 ncRNA 100035063 Egq3 - - - early growth QTL 3 unknown 624713 Mm.442604 NR_036654 Gm6525 EG624713 - 3|3 F1 ribosomal protein L36a pseudogene pseudo 102636951 XR_383693 Gm33880 - - 14 E2.2|14 predicted gene, 33880 ncRNA 100038590 Mm.4450 Gm10535 - - - predicted gene 10535 unknown 100124693 Trbv27 - - 6|6 B1 T cell receptor beta variable 27 pseudo 384398 Gm5307 Aurkb-ps|EG384398 - 6|6 C1 aurora kinase B pseudogene pseudo 503691 Mm.44798 A030001O10Rik - - - RIKEN cDNA A030001O10 gene protein-coding 258940 Mm.223338 NM_146938 ENSMUSG00000094764 Olfr346 MOR136-11 - 2|2 B olfactory receptor 346 protein-coding 242161 LOC242161 - - 3|3 F3 uncharacterized LOC242161 ncRNA 66970 Mm.343095 NM_024186 ENSMUSG00000003992 Ssbp2 1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2 - 13|13 C3 single-stranded DNA binding protein 2 protein-coding 668233 Gm9058 EG668233 - 8|8 E1 ribosomal protein S3A pseudogene pseudo 22695 Mm.389856 NM_011756 ENSMUSG00000044786 Zfp36 Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36 - 7 A3-B1|7 16.72 cM zinc finger protein 36 protein-coding 53056 B22SP6 - - - DNA segment, B22SP6 unknown 100041739 Mm.259285 XR_389128 1700025D23Rik - - 11|11 E2 RIKEN cDNA 1700025D23 gene unknown 669833 Gm16463 EG667813 - X|X C1 predicted gene 16463 pseudo 108168691 XM_017318933 LOC108168691 - - - putative F-box protein At1g47300 protein-coding 100503438 Mm.483820 Gm19692 - - 6|6 46.92 cM predicted gene, 19692 unknown 383936 Mm.477959 Gm5283 EG383936 - 3|3 A1 ATPase, H+ transporting, V1 subunit G pseudogene pseudo 105243335 Gm39287 - - 8|8 predicted gene, 39287 ncRNA 102636931 Mm.247195 XM_017315317 Gm33869 - - 12 B3|12 predicted gene, 33869 protein-coding 102636764 NR_151519 ENSMUSG00000099706 Gm29536 - - 1 C4|1 predicted gene 29536 ncRNA 667762 Gm12218 - - 11|11 B1.3 predicted gene 12218 pseudo 238448 Ighv1-62-2 EG238448|Gm4932 - 12|12 F2 immunoglobulin heavy variable 1-62-2 other 67509 Mm.292423 NM_026209 ENSMUSG00000045107 Saysd1 1810063B07Rik|4930488P03Rik - 14|14 A3 SAYSVFN motif domain containing 1 protein-coding 387150 NR_029546 ENSMUSG00000065537 Mir132 Mirn132|mir-132|mmu-mir-132 - 11|11 B5 microRNA 132 ncRNA 102636087 XR_374255 Gm13609 - - 2 B|2 21.99 cM predicted gene 13609 ncRNA 102636528 XR_391553 Gm33570 Gm45067 - 7 C|7 predicted gene, 33570 ncRNA 629374 Mageb6-ps EG629374|Gm42|Gm6968|Mageb6|mMage-b6 - X|X C1 melanoma antigen, family B, 6, pseudogene pseudo 100035084 Egaq4 - - - early growth adjusted QTL 4 unknown 665079 Gm11903 - - 4|4 A3 ribosomal protein S6 pseudogene pseudo 100417323 Gm18533 - - 15|15 A2 crumbs homolog 1 pseudogene pseudo 105245413 Mm.135634 Gm11377 - - 13|13 13.46 cM predicted gene 11377 ncRNA 668766 Gm9343 EG668766 - 7 B5|7 predicted gene 9343 pseudo 102633177 XR_388207 Gm31069 - - 8 E2|8 predicted gene, 31069 ncRNA 101056230 Gm28682 - - Y|Y predicted gene 28682 pseudo 102639764 XR_001778524 Gm35998 Gm45726 - 8 A1.3|8 predicted gene, 35998 ncRNA 102542 AI480769 - - - expressed sequence AI480769 unknown 100862178 Gm21542 - - 19|19 predicted gene, 21542 pseudo 102633838 XR_386666 Gm31568 - - 19 C2|19 predicted gene, 31568 ncRNA 735270 NR_030491 ENSMUSG00000076042 Mir710 Mirn710|mmu-mir-710 - 8 B3.1|8 microRNA 710 ncRNA 105244969 XR_870314 Gm40487 - - 8 A4|8 predicted gene, 40487 ncRNA 66268 Mm.28924 NM_025457 ENSMUSG00000010607 Pigyl 1810008A14Rik|PIG-Y|Pigy - 9|9 A3 phosphatidylinositol glycan anchor biosynthesis, class Y-like protein-coding 77128 Mm.275414 NM_029870 ENSMUSG00000048249 Crebrf A930001N09Rik|LRF - 17|17 A3.3 CREB3 regulatory factor protein-coding 21864 tip - - - tippy unknown 106852 AA516741 - - - expressed sequence AA516741 unknown 100416175 Gm13593 - - 2|2 C1.3 predicted gene 13593 pseudo 319618 Mm.250197 NM_001033379 ENSMUSG00000041477 Dcp1b B930050E02Rik - 6|6 F1 decapping mRNA 1B protein-coding 492917 Pcd4ts1 - - 6 15.12 cM p-glycoprotein positive CD4 T cell subset 1 unknown 102633627 XR_385459 LOC102633627 - - 17 A3.3 tropomyosin alpha-4 chain pseudogene pseudo 108169109 LOC108169109 - - 5 C3.3 astrocytic phosphoprotein PEA-15 pseudogene pseudo 67674 Mm.318804 NM_026306 ENSMUSG00000038812 Trmt112 0610038D11Rik|Trm112p - 19|19 A tRNA methyltransferase 11-2 protein-coding 338467 Mm.287329 NM_001045529 ENSMUSG00000039456 Morc3 1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3 - 16|16 C4 microrchidia 3 protein-coding 102633148 XR_378936 Gm31050 - - 8 B1.1|8 predicted gene, 31050 ncRNA 68223 Mm.233827 NM_183272 ENSMUSG00000030859 Fam24a 1700063I17Rik - 7|7 F3 family with sequence similarity 24, member A protein-coding 102632965 Gm30907 - - 4 B3|4 predicted gene, 30907 pseudo 105245200 Gm40686 - - 10|10 predicted gene, 40686 ncRNA 105244083 XR_865974 Gm39760 - - 2 A1|2 predicted gene, 39760 ncRNA 641454 Mm.150322 NR_102283 ENSMUSG00000084803 5830444B04Rik - - 4|4 E2 RIKEN cDNA 5830444B04 gene ncRNA 102636193 Gm33328 - - 8|8 predicted gene, 33328 protein-coding 112065 Mobq3 Mob3 - 12 57.3 cM multigenic obesity QTL 3 unknown 100312481 Vmn1r-ps42 - - 7 A1|7 3.32 cM vomeronasal 1 receptor, pseudogene 42 pseudo 109279860 LOC109279860 Mm43 - - VISTA enhancer mm43 biological-region 72719 Mm.441759 2810040C05Rik C79728 - 4|4 RIKEN cDNA 2810040C05 gene protein-coding 100534390 LOC100534390 - - 17|17 E1.3 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit pseudogene pseudo 641025 Mm.303767 XM_017318940 LOC641025 CRP55H|IGHV|IgVH|Igh|Igm - - Ig heavy chain Mem5-like protein-coding 77867 Mm.160009 D730045B01Rik - - 5|5 G3 RIKEN cDNA D730045B01 gene unknown 18626 Mm.7373 NM_011065 ENSMUSG00000020893 Per1 Hftm|Per|m-rigui|mPer1 - 11|11 B3 period circadian clock 1 protein-coding 52502 Mm.142095 NM_025821 ENSMUSG00000008393 Carhsp1 1200011K09Rik|Crhsp-24|D16Ertd465e - 16 A1|16 4.26 cM calcium regulated heat stable protein 1 protein-coding 620750 Gm6177 EG620750 - 1|1 H2.1 ribosomal protein L23A pseudogene pseudo 100035151 Bntq8 - - - bone traits QTL 8 unknown 258992 Mm.391191 NM_146990 ENSMUSG00000050865 Olfr1494 MOR266-1 - 19|19 A olfactory receptor 1494 protein-coding 105242453 XM_017318978 LOC105242453 - - - gastrula zinc finger protein XlCGF26.1-like protein-coding 382518 Gm12201 - - 11|11 B1.3 tubulin alpha-4 pseudogene pseudo 102637864 Gm23428 - - 9 C|9 predicted gene, 23428 pseudo 69612 Mm.229107 NM_133714 ENSMUSG00000022992 Kansl2 2310037I24Rik|B930009D17 - 15|15 F1 KAT8 regulatory NSL complex subunit 2 protein-coding 102467250 n-TRtcg1 n-Tr15 - 13 A3.1|13 nuclear encoded tRNA arginine 1 (anticodon TCG) tRNA 73919 Mm.46381 NM_029610 ENSMUSG00000030922 Lyrm1 1110065L10Rik|2310004B22Rik|4930404J24Rik - 7|7 F2 LYR motif containing 1 protein-coding 664893 Gm7393 EG664893 - 17|17 A2 predicted gene 7393 pseudo 637908 Mm.469871 NM_001104644 ENSMUSG00000096002 Vmn2r53 EG637908|Gm471 - 7|7 A1 vomeronasal 2, receptor 53 protein-coding 105242994 XR_869792 Gm39048 - - 7 E1|7 predicted gene, 39048 ncRNA 621364 XM_885772 Frg2f4 EG621364|Gm6219 - 14|14 E2.3 FSHD region gene 2 family member 4 protein-coding 546250 Gm5930 EG546250 - 14|14 C1 predicted gene 5930 pseudo 102637629 Gm34391 - - 6 G1|6 predicted gene, 34391 pseudo 105244174 XR_879897 Gm39828 - - 11 B1.3|11 predicted gene, 39828 ncRNA 102467518 n-TEctc4 n-Te4 - 17 D|17 nuclear encoded tRNA glutamic acid 4 (anticodon CTC) tRNA 109279873 LOC109279873 Mm77 - - VISTA enhancer mm77 biological-region 102639679 XR_378761 Gm35934 Gm45771 - 8 A1.3|8 predicted gene, 35934 ncRNA 229687 Mm.39224 NM_170594 ENSMUSG00000043873 Chil5 Bclp|Bclp1|Bclp2|Chi3l7 - 3|3 F2.2 chitinase-like 5 protein-coding 210145 Mm.33811 NM_199013 ENSMUSG00000062028 Irgc1 F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc - 7|7 A3 immunity-related GTPase family, cinema 1 protein-coding 100416303 Gm15081 - - X|X F2 lysyl-tRNA synthetase pseudogene pseudo 387206 NR_029793 ENSMUSG00000065551 Mir210 Mirn210|mir-210|mmu-mir-210 - 7|7 F5 microRNA 210 ncRNA 108168127 n-TDgtc12 Trnad-guc|n-Td12 - 13 A3.1|13 nuclear encoded tRNA aspartic acid 12 (anticodon GTC) tRNA 100035948 T2dm2sa - - - type 2 diabetes mellitus 2 in SMXA RI mice unknown 83921 Mm.329776 NM_031997 ENSMUSG00000024754 Tmem2 - - 19|19 B transmembrane protein 2 protein-coding 100042953 Gm4125 - - 17 B1|17 nuclear factor, interleukin 3, regulated pseudogene pseudo 259048 Mm.377806 NM_147046 ENSMUSG00000045540 Olfr600 MOR39-1 - 7|7 E3 olfactory receptor 600 protein-coding 70891 Mm.477599 NM_029254 ENSMUSG00000052525 Spdya 4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1 - 17|17 E1.3 speedy/RINGO cell cycle regulator family, member A protein-coding 14000 Mm.293142 NM_026799 ENSMUSG00000022191 Drosha 1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen - 15|15 A1 drosha, ribonuclease type III protein-coding 102631961 Mm.421654 XR_384237 ENSMUSG00000097085 Gm26634 - - 15 E1|15 predicted gene, 26634 ncRNA 239530 Mm.122997 NM_173365 ENSMUSG00000045281 Gpr20 A430106B11Rik - 15|15 D3 G protein-coupled receptor 20 protein-coding 780864 Ighv15-2 - - 12|12 F2 immunoglobulin heavy variable V15-2 other 668442 Gm12310 - - 11|11 B3 cofilin 1, non-muscle pseudogene pseudo 23833 Mm.24130 NM_013706 ENSMUSG00000000682 Cd52 AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7 - 4 D3|4 66.5 cM CD52 antigen protein-coding 100035878 Dxmod DOXmod - - doxorubicin nephropathy modifier unknown 101056006 Gm29761 - - 9 A3|9 predicted gene, 29761 pseudo 100042965 Gm13879 - - 2|2 E2 predicted gene 13879 pseudo 100504154 Mm.440491 NR_152256 ENSMUSG00000087626 Gm15050 - - 6 B3|6 25.4 cM predicted gene 15050 ncRNA 106846 Mm.312685 AA408650 - - - expressed sequence AA408650 unknown 74616 Mm.247457 NM_029022 ENSMUSG00000008226 Scrn3 4833415E20Rik|AI427019|AV002033|Ses3 - 2|2 C3 secernin 3 protein-coding 62082 D10Mit68 - - 10 47.46 cM DNA segment, Chr 10, Massachusetts Institute of Technology 68 unknown 53047 K20SP6 - - - DNA segment, K20SP6 unknown 665232 Gm11929 - - 4|4 A5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105245190 XR_871771 Gm40677 - - 10 B5.1|10 predicted gene, 40677 ncRNA 105245821 Gm41211 - - 14|14 predicted gene, 41211 ncRNA 404518 Olfr1478-ps1 GA_x5J8B7W6KF8-5546505-5545716 - 19|19 A olfactory receptor 1478, pseudogene 1 pseudo 18389 Mm.285075 NM_011012 ENSMUSG00000027584 Oprl1 KOR-3|KOR3|LC132|MOR-C|NOP|ORGC|ORL1|Oprl|XOR1|morc - 2 H4|2 103.74 cM opioid receptor-like 1 protein-coding 53147 279P18Sp6 - - - DNA segment, 279P18Sp6 unknown 626942 Mm.404019 NM_001104539 ENSMUSG00000092120 Vmn2r90 EG626942 - 17|17 A3.2 vomeronasal 2, receptor 90 protein-coding 67088 Mm.277683 NM_025958 ENSMUSG00000030319 Cand2 2210404G23Rik|Tp120b|mKIAA0667 - 6|6 E3 cullin-associated and neddylation-dissociated 2 (putative) protein-coding 96927 C86562 - - - expressed sequence C86562 unknown 76656 Mm.489047 1700120O09Rik - - 14|14 D1 RIKEN cDNA 1700120O09 gene protein-coding 100041026 Gm12466 - - 4|4 B2 ribosomal protein L13 pseudogene pseudo 75170 Mm.372967 NR_045713 ENSMUSG00000093528 Nrg3os 4930529F24Rik - 14|14 B neuregulin 3, opposite strand ncRNA 102631694 XR_386386 Gm29967 - - 18 E3|18 predicted gene, 29967 ncRNA 100502857 Gm19417 - - 4|4 45.52 cM predicted gene, 19417 ncRNA 102639299 XR_001780667 Gm35644 - - 12 E|12 predicted gene, 35644 ncRNA 105243065 XR_869981 Gm39096 - - 7 F3|7 predicted gene, 39096 ncRNA 320032 Mm.39644 XR_001785201 C130093G08Rik - - 6|6 A3.1 RIKEN cDNA C130093G08 gene protein-coding 105243436 XR_870866 Gm39361 - - 9 C|9 predicted gene, 39361 ncRNA 68655 Mm.379161 NM_001081416 ENSMUSG00000071984 Fndc1 1110027O12Rik|1110051A18Rik|mKIAA1866 - 17|17 A1 fibronectin type III domain containing 1 protein-coding 101056222 Gm28574 - - Y|Y predicted gene 28574 protein-coding 100036209 Lbm6 - - - lean body mass 6 unknown 26397 Mm.18494 NM_008928 ENSMUSG00000018932 Map2k3 AW212142|MEK3|MKK3|Prkmk3|mMKK3b - 11|11 B2 mitogen-activated protein kinase kinase 3 protein-coding 105247087 Gm42249 - - 2 H4|2 predicted gene, 42249 pseudo 77518 9330179C17Rik - - 7|7 RIKEN cDNA 9330179C17 gene protein-coding 76205 Mm.41940 NM_024270 ENSMUSG00000003062 Stard3nl 0610035N01Rik|6530409L22Rik|AW124774|MENTHO - 13|13 A2 STARD3 N-terminal like protein-coding 27475 20S - - - DNA segment, 20S unknown 640145 Gm7287 - - 7|7 A2 ribosomal protein L15 pseudogene pseudo 100417932 Gm18907 - - 7|7 E3 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene pseudo 320739 Mm.388474 NR_130170 6530403H02Rik - - 3|3 G1 RIKEN cDNA 6530403H02 gene ncRNA 100039639 Gm11539 - - 11|11 D ribosomal protein L18 pseudogene pseudo 102633770 XR_383094 ENSMUSG00000114538 Gm31517 - - 14 A2|14 predicted gene, 31517 ncRNA 319178 Mm.390567 NM_175664 ENSMUSG00000075031 Hist1h2bb H2b-143 - 13|13 A3.1 histone cluster 1, H2bb protein-coding 116617 D7Tem21 - - - DNA segment, Chr 7, Tempel 21 unknown 102467409 n-TVtac2 n-Tv22 - 19 A|19 nuclear encoded tRNA valine 2 (anticodon TAC) tRNA 108168712 XR_001783024 Gm46724 - - 4 D2.2|4 predicted gene, 46724 ncRNA 79410 Mm.482592 NM_024470 Klra23 Ly-49W1|Ly-49W2|Ly49W - 6|6 F3 killer cell lectin-like receptor subfamily A, member 23 protein-coding 100503003 Mm.401217 NR_154462 Gm17484 - - 8|8 predicted gene, 17484 ncRNA 102634185 XR_376633 Gm31830 - - 4 D2.2|4 predicted gene, 31830 ncRNA 100034779 Sluc18 - - 4 20.11 cM susceptibility to lung cancer 18 unknown 108168997 XR_001784535 Gm46885 - - 4 C3|4 predicted gene, 46885 ncRNA 101055662 Gm29706 - - 7 E3|7 predicted gene, 29706 pseudo 19352 Mm.277831 NM_011231 ENSMUSG00000038975 Rabggtb - - 3 H3|3 78.76 cM Rab geranylgeranyl transferase, b subunit protein-coding 105243096 Gm39118 - - 7|7 predicted gene, 39118 ncRNA 319305 Mm.343005 A730087J23Rik - - 13|13 RIKEN cDNA A730087J23 gene unknown 76821 2600017C09Rik - - - RIKEN cDNA 2600017C09 gene protein-coding 545982 Gm5899 EG545982 - 7|7 E1 predicted pseudogene 5899 pseudo 100042709 Gm20937 - - Y|Y predicted gene, 20937 protein-coding 100038437 Mm.411788 XR_379164 Gm10706 - - 9 A2|9 predicted gene 10706 unknown 102641872 LOC102641872 - - - trafficking protein particle complex subunit 10 protein-coding 23980 Mm.195898 NM_018858 ENSMUSG00000032959 Pebp1 HCNP|Pbp|Pbp1|Pbpr|Rkip - 5 F|5 56.88 cM phosphatidylethanolamine binding protein 1 protein-coding 16973 Mm.274581 NM_008513 ENSMUSG00000024913 Lrp5 BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142 - 19|19 A low density lipoprotein receptor-related protein 5 protein-coding 56588 242D11L2 - - - DNA segment, 242D11L2 unknown 381319 Mm.6922 NM_030060 ENSMUSG00000026630 Batf3 9130211I03Rik|Snft - 1|1 H6 basic leucine zipper transcription factor, ATF-like 3 protein-coding 102637197 XR_390476 Gm34071 - - 4 A5|4 predicted gene, 34071 ncRNA 68668 Mm.458122 NM_026806 ENSMUSG00000074155 Klk5 1110030O19Rik - 7 B3|7 28.3 cM kallikrein related-peptidase 5 protein-coding 21957 Mm.389992 NM_011620 ENSMUSG00000061723 Tnnt3 fTnT - 7 F5|7 87.94 cM troponin T3, skeletal, fast protein-coding 102502 Mm.11869 NM_001033210 ENSMUSG00000049493 Pls1 AI427122 - 9|9 E3.3 plastin 1 (I-isoform) protein-coding 60812 D4Mit43 - - 4 50.18 cM DNA segment, Chr 4, Massachusetts Institute of Technology 43 unknown 67225 Mm.316928 NM_026043 ENSMUSG00000027981 Rnpc3 2810441O16Rik|AI447568|C030014B17Rik - 3|3 F3 RNA-binding region (RNP1, RRM) containing 3 protein-coding 404579 Mm.248019 AL118337 - - - expressed sequence AL118337 unknown 94064 Mm.34951 NM_053161 ENSMUSG00000024414 Mrpl27 A630055F16Rik|D11Moh47|D18Ertd643e - 11 D|11 58.9 cM mitochondrial ribosomal protein L27 protein-coding 100036100 Mfiq2 - - - M16 feed intake QTL 2 unknown 385333 Gm5383 EG385333 - X|X A1.3 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 60455 Mm.304656 NM_021793 ENSMUSG00000024180 Tmem8 AW490096|GPI-PLA2|M83|Pgap6|Tmem8a - 17|17 A3.3 transmembrane protein 8 (five membrane-spanning domains) protein-coding 61692 D6Mit243 - - 6 32.27 cM DNA segment, Chr 6, Massachusetts Institute of Technology 243 unknown 545085 Mm.321312 NM_001081402 ENSMUSG00000039828 Wdr70 4833422F06Rik - 15|15 A1 WD repeat domain 70 protein-coding 26878 Mm.285580 NM_020025 ENSMUSG00000033849 B3galt2 - - 1|1 F UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 protein-coding 102642016 Prssly - - - protease, serine-like, Chr Y protein-coding 105246520 Gm41799 - - 18|18 predicted gene, 41799 ncRNA 75610 Mm.175502 NM_029363 ENSMUSG00000029384 2010109A12Rik - - 5|5 E2 RIKEN cDNA 2010109A12 gene protein-coding 14766 Mm.290834 NM_018882 ENSMUSG00000031785 Adgrg1 Cyt28|Gpr56|TM7LN4|TM7XN1 - 8 C5|8 47.12 cM adhesion G protein-coupled receptor G1 protein-coding 69723 Mm.275691 NM_027186 ENSMUSG00000018449 Rpain 2400006N03Rik|Rip - 11|11 B4 RPA interacting protein protein-coding 668656 Gm9289 EG668656 - 12|12 A1.3 predicted gene 9289 pseudo 100040661 Gm9825 - - 6 A1|6 ribonucleic acid binding protein S1 pseudogene pseudo 100039571 Gm10335 - - 10|10 A2 ribosomal protein L23A pseudogene pseudo 102635554 XR_001781227 LOC102635554 - - 14 B uncharacterized LOC102635554 ncRNA 101071 AI315681 - - - expressed sequence AI315681 protein-coding 100145 Mm.327235 AI467481 - - - expressed sequence AI467481 unknown 97266 C87115 - - - expressed sequence C87115 unknown 666094 Gm7926 EG666094 - 18|18 B1 predicted gene 7926 pseudo 108168523 Gm46711 - - Y C3|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 105180384 F830230K02Rik - - - Riken cDNA F830230K02 gene protein-coding 102467300 n-TEctc7 n-Te7 - 1 H3|1 nuclear encoded tRNA glutamic acid 7 (anticodon CTC) tRNA 102639537 XR_389078 Gm35828 - - 11 E1|11 predicted gene, 35828 ncRNA 101055891 Gm29739 - - 3 B|3 predicted gene, 29739 pseudo 27864 D0Nds26 - - - DNA segment, Nuffield Department of Surgery 26 unknown 96960 C77491 - - - expressed sequence C77491 protein-coding 19300 Mm.229109 NM_008992 ENSMUSG00000021240 Abcd4 P69r|P70R|Pxmp1l - 12 D1|12 39.3 cM ATP-binding cassette, sub-family D (ALD), member 4 protein-coding 258196 Mm.389956 NM_001011866 ENSMUSG00000054054 Olfr309 MOR251-4P - 7|7 D3 olfactory receptor 309 protein-coding 68966 Mm.21214 NM_026890 ENSMUSG00000022204 Ngdn 1500001L15Rik|Ngd|neuroguidin - 14|14 C3 neuroguidin, EIF4E binding protein protein-coding 77748 Mm.392803 9230111E07Rik - - 2|2 RIKEN cDNA 9230111E07 gene unknown 73612 1700127G19Rik - - 18|18 RIKEN cDNA 1700127G19 gene protein-coding 385472 Gm5397 EG385472 - X|X A7.3 predicted gene 5397 pseudo 14622 Mm.26859 NM_010291 ENSMUSG00000042357 Gjb5 Cnx31.1|Cx31.1|Gjb-5 - 4 D2.2|4 61.51 cM gap junction protein, beta 5 protein-coding 50757 Mm.296059 NM_015793 ENSMUSG00000105589 Fbxw14 AU045528|E330009N23Rik|Fbx12|Fbxo12 - 9|9 F2 F-box and WD-40 domain protein 14 protein-coding 102465200 NR_105802 ENSMUSG00000098871 Mir6381 Gm27963|mmu-mir-6381 - 3|3 H1 microRNA 6381 ncRNA 625775 Gm6621 EG625775 - 1 B|1 ribosomal protein L7A pseudogene pseudo 74007 Mm.36544 NM_028709 ENSMUSG00000020042 Btbd11 6330404E16Rik - 10|10 C1 BTB (POZ) domain containing 11 protein-coding 100039322 Gm2157 - - 15 A1|15 ribosomal protein L22 like 1 pseudogene pseudo 74949 4930477E14Rik - - 3|3 RIKEN cDNA 4930477E14 gene protein-coding 57316 Mm.287982 NM_020558 ENSMUSG00000000581 C1d 1110036E10Rik|AI875855|SUN-CoR - 11|11 A3.1 C1D nuclear receptor co-repressor protein-coding 665409 Gm7626 EG665409 - 1|1 H2.3 transcription elongation factor B polypeptide 2 pseudogene pseudo 18777 Mm.299955 NM_008866 ENSMUSG00000025903 Lypla1 APT-1|Gm39587|LPL-I|Pla1a - 1|1 A1 lysophospholipase 1 protein-coding 14594 Mm.281124 NM_010283 ENSMUSG00000035778 Ggta1 AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT - 2 B|2 23.6 cM glycoprotein galactosyltransferase alpha 1, 3 protein-coding 102636695 XR_379068 Gm33695 - - 8 B3.3|8 predicted gene, 33695 ncRNA 73867 Mm.78933 NR_045943 ENSMUSG00000112967 4930428E07Rik - - 12|12 A3 RIKEN cDNA 4930428E07 gene ncRNA 100041002 Mm.397543 Gm3088 - - 2 B|2 predicted gene 3088 unknown 105242741 XR_869365 Gm38875 - - 6 E3|6 predicted gene, 38875 ncRNA 102636532 Gm33571 - - Y|Y predicted gene, 33571 protein-coding 100526505 NR_037283 ENSMUSG00000093348 Mir3101 mir-3101|mmu-mir-3101 - 7 A3|7 15.84 cM microRNA 3101 ncRNA 100503798 Gm19901 - - 3 E1|3 29.81 cM splicing factor, arginine/serine-rich 13A-like pseudo 109587 Wc - - - waved coat unknown 100416360 LOC100416360 - - 17|17 B1 ribosomal protein S6 pseudogene pseudo 15153 Hc4 Cen4 - - heterochromatin, Chr 4 other 99467 Mm.404389 BB235207 - - - expressed sequence BB235207 unknown 59047 Mm.238254 NM_021549 ENSMUSG00000002963 Pnkp 1810009G08Rik|PNK - 7|7 B3 polynucleotide kinase 3'- phosphatase protein-coding 72823 Mm.35153 NM_001081050 ENSMUSG00000052062 Pard3b 1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta - 1|1 C2 par-3 family cell polarity regulator beta protein-coding 547402 Gm6035 EG547402 - 13|13 D2.2 ribosomal protein L3 pseudogene pseudo 100041859 Gm3550 - - 18 B1|18 ribosomal protein L29 pseudogene pseudo 85041 D3Mit60 - - 3 1.96 cM DNA segment, Chr 3, Massachusetts Institute of Technology 60 unknown 117571 DXMgc94 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 94 unknown 319467 Mm.447279 NR_126083 ENSMUSG00000114961 A930002C04Rik - - 13|13 A5 RIKEN cDNA A930002C04 gene ncRNA 546024 Mm.259041 NM_001033638 ENSMUSG00000074365 Crxos AA606869|AY590891|Crxos1|Egam1 - 7|7 A2 cone-rod homeobox, opposite strand protein-coding 100124352 Traj37 Gm16671 - 14|14 C2 T cell receptor alpha joining 37 other 102639559 XR_882313 Gm35843 - - Y A1|Y predicted gene, 35843 ncRNA 105245066 XR_872969 Gm40569 - - 12 F1|12 predicted gene, 40569 ncRNA 108167431 LOC108167431 - - 7 C small nuclear ribonucleoprotein-associated protein B'-like pseudo 664982 Gm7437 - - X A3.1|X predicted gene 7437 protein-coding 102636968 Mm.136083 NR_151606 ENSMUSG00000085632 Gm12381 - - 4 A5|4 19.97 cM predicted gene 12381 ncRNA 18109 Mm.16469 NM_008709 ENSMUSG00000037169 Mycn N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc - 12 A1.1|12 6.14 cM v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived protein-coding 112041 Swq3 - - - spleen weight QTL 3 unknown 61590 D9Mit286 - - 9 22.0 cM DNA segment, Chr 9, Massachusetts Institute of Technology 286 unknown 102465792 NR_106162 ENSMUSG00000098884 Mir7689 Gm27434|mmu-mir-7689 - 5|5 B3 microRNA 7689 ncRNA 102636922 XR_380850 Gm33861 - - 10 D2|10 predicted gene, 33861 ncRNA 102631711 Gm29981 - - 15|15 predicted gene, 29981 ncRNA 104134 H19h H-19 - - histocompatibility 19 protein-coding 102466238 NR_106133 ENSMUSG00000099072 Mir7673 Gm27569|mmu-mir-7673 - X|X C3 microRNA 7673 ncRNA 100049549 NR_030534 ENSMUSG00000076338 Mir181d Mirn181d|mir-181d - 8 C2|8 microRNA 181d ncRNA 28037 D1Wsu158e - - 1 30.45 cM DNA segment, Chr 1, Wayne State University 158, expressed unknown 20595 Mm.2025 NM_011420 ENSMUSG00000021645 Smn1 AI849087|Gemin1|Smn - 13 D1|13 52.99 cM survival motor neuron 1 protein-coding 14489 Mm.182746 NM_008098 ENSMUSG00000029840 Mtpn 5033418D15Rik|Gcdp|V1 - 6|6 B1 myotrophin protein-coding 100035149 Bntq3 - - - bone traits QTL 3 unknown 102640026 XR_390300 Gm16357 - - 2 H4|2 98.58 cM predicted gene 16357 ncRNA 100047050 Gm20566 - - 3|3 B 60S ribosomal protein L23-like pseudo 629925 Ighv1-49 Gm16830 - 12|12 F2 immunoglobulin heavy variable 1-49 other 102639497 XR_869029 Gm35798 - - 6 B2.3|6 predicted gene, 35798 ncRNA 244180 Mm.17149 NM_172905 ENSMUSG00000044265 Olfm5 E030002O03Rik - 7|7 E3 olfactomedin 5 protein-coding 626053 XM_011240678 Gm6647 EG626053 - 5|5 A1 predicted gene 6647 protein-coding 105245991 XR_875480 Gm41358 - - 15 E1|15 predicted gene, 41358 ncRNA 19732 Mm.43777 NM_009059 ENSMUSG00000041354 Rgl2 KE1.5|Rab2l|Rgt2|Rlf - 17|17 B1 ral guanine nucleotide dissociation stimulator-like 2 protein-coding 100534354 LOC100534354 - - 2|2 C1.1 vacuolar protein sorting 45 (yeast) pseudogene pseudo 105246851 Mm.399393 LOC105246851 - - - uncharacterized LOC105246851 ncRNA 207728 Mm.247564 NM_001008548 ENSMUSG00000030653 Pde2a CGS-PDE|cGSPDE - 7|7 E2 phosphodiesterase 2A, cGMP-stimulated protein-coding 18213 Mm.33496 NM_008746 ENSMUSG00000059146 Ntrk3 AW125844|Ntrk3_tv3|TrkC - 7 D2|7 44.01 cM neurotrophic tyrosine kinase, receptor, type 3 protein-coding 100504325 XR_001783630 Gm11007 - - 2 H4|2 98.61 cM predicted gene 11007 pseudo 69382 Mm.45466 NM_027064 ENSMUSG00000045022 1700024P04Rik H2bl1|Subh2bv - 13|13 D1 RIKEN cDNA 1700024P04 gene protein-coding 70757 Mm.27286 NM_023587 ENSMUSG00000035376 Hacd2 6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb - 16|16 B3 3-hydroxyacyl-CoA dehydratase 2 protein-coding 66377 Mm.331007 NM_025523 ENSMUSG00000037152 Ndufc1 2310016K22Rik|KFYI - 3|3 C NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1 protein-coding 102639950 XR_382820 LOC102639950 - - 13 D1 uncharacterized LOC102639950 ncRNA 109279868 LOC109279868 Mm69 - - VISTA enhancer mm69 biological-region 54524 Mm.88818 NM_018800 ENSMUSG00000027849 Syt6 3110037A08Rik|AW048930|sytVI - 3|3 F2.2 synaptotagmin VI protein-coding 102632739 XM_006526406 LOC102632739 - - 18 B3 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4-like protein-coding 102465968 NR_105855 ENSMUSG00000098441 Mir6537 Gm27808|mmu-mir-6537 - 7|7 A3 microRNA 6537 ncRNA 97031 Mm.308539 NM_175286 ENSMUSG00000048707 Tprn C430004E15Rik|C87750 - 2|2 A3 taperin protein-coding 60721 D9Mit61 - - 9 4.13 cM DNA segment, Chr 9, Massachusetts Institute of Technology 61 unknown 23923 Mm.35020 NM_011834 ENSMUSG00000057228 Aadat AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2 - 8 B3.1|8 30.85 cM aminoadipate aminotransferase protein-coding 100036538 Mm.441952 BC028777 5430411J08Rik - - cDNA sequence BC028777 ncRNA 109286566 Crest2 - - - Isl1 enhancer E2 biological-region 640970 LOC640970 - - - h-2 class I histocompatibility antigen, TLA(B) alpha chain-like protein-coding 105245228 XR_871862 Gm40712 - - 10 C1|10 predicted gene, 40712 ncRNA 226472 Gm4845 EG226472 - 1|1 F glutathione S-transferase, mu 4 pseudogene pseudo 108167396 LOC108167396 - - - Ig heavy chain V region 914-like other 231620 LOC231620 - - 5|5 F uncharacterized LOC231620 unknown 101056048 Gm28517 - - Y|Y predicted gene 28517 protein-coding 61360 D4Mit175 - - 4 45.71 cM DNA segment, Chr 4, Massachusetts Institute of Technology 175 unknown 109264 Mm.334011 NM_181407 ENSMUSG00000030621 Me3 1700020C08Rik|B230207H15Rik - 7|7 D3 malic enzyme 3, NADP(+)-dependent, mitochondrial protein-coding 20557 Mm.290922 NM_011409 ENSMUSG00000018986 Slfn3 - - 11|11 C schlafen 3 protein-coding 100126357 Mm.440069 Gm10676 - - - predicted gene 10676 unknown 100417777 Gm18818 - - 11|11 B1.3 ATPase family, AAA domain containing 1 pseudogene pseudo 105242932 Gm39004 - - 7|7 predicted gene, 39004 ncRNA 100302432 NM_001199307 Gm14435 - - 2|2 H4 KRAB box containing protein pseudo 545677 Mm.372731 NM_001033791 ENSMUSG00000073764 Gm12888 - - 4 D2.2|4 predicted gene 12888 protein-coding 100038739 Mm.437382 Gm10615 - - - predicted gene 10615 unknown 258979 Mm.377775 NM_146977 ENSMUSG00000045148 Olfr1255 MOR232-4 - 2|2 E1 olfactory receptor 1255 protein-coding 320886 A630006J10Rik - - 1|1 RIKEN cDNA A630006J10 gene protein-coding 111849 Iapls3-40 - - - intracisternal A particle, lymphocyte specific 3-40 other 23897 Mm.256035 NM_011826 ENSMUSG00000027944 Hax1 HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s - 3|3 F1 HCLS1 associated X-1 protein-coding 620119 Gm6128 EG620119|H3mm6 - 14|14 A3 H3 histone, family 3A pseudogene pseudo 258808 Mm.377699 NM_146812 ENSMUSG00000045132 Olfr620 MOR4-1 - 7|7 E3 olfactory receptor 620 protein-coding 102633699 XR_389011 Gm31460 - - 11 D|11 predicted gene, 31460 ncRNA 21089 T(15;16)198Dn T198Dn - - reciprocal translocation, Chr 15 and 16, Davisson 198 other 112136085 LOC112136085 - - - uncharacterized LOC112136085 pseudo 102640474 Gm28742 - - Y|Y predicted gene 28742 ncRNA 114576 Hdl3 - - 16 19.88 cM high density lipoprotein (HDL) level 3 unknown 56443 Mm.371610 NM_019767 ENSMUSG00000029621 Arpc1a 0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329 - 5|5 G2 actin related protein 2/3 complex, subunit 1A protein-coding 626583 Mm.333124 Igkv3-2 IgK|IgK21-2|Igk-V21-2 - 6|6 C1 immunoglobulin kappa variable 3-2 other 632394 Gm14251 - - 2|2 H1 predicted gene 14251 pseudo 103784 Mm.298132 NM_178909 ENSMUSG00000078970 Wdr92 AI553587|HZGJ - 11|11 A2 WD repeat domain 92 protein-coding 100417632 Gm15004 - - X|X F1 presenilin associated, rhomboid-like pseudogene pseudo 111269 Hprt-ps1 D17Rp10|RP10 - - hypoxanthine guanine phosphoribosyl transferase pseudogene 1 pseudo 108167880 XR_001780157 Gm46267 - - 11 A1|11 predicted gene, 46267 ncRNA 100038468 Mm.446750 NR_033547 ENSMUSG00000074385 Gm10684 - - 9 A5.2|9 predicted gene 10684 ncRNA 62939 D11Mit318 - - 11 37.96 cM DNA Segment, Chr 11, Massachusetts Institute of Technology 318 unknown 258747 Mm.377670 NM_146752 ENSMUSG00000075164 Olfr1106 MOR172-6|MOR172-8_p - 2|2 D olfactory receptor 1106 protein-coding 52791 D18Wsu187e - - - DNA segment, Chr 18, Wayne State University 187, expressed unknown 20892 Mm.259716 NM_016665 ENSMUSG00000025144 Cenpx Stra13 - 11|11 E2 centromere protein X protein-coding 100040634 Gm10284 - - 8|8 B2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105245696 XR_874400 5430425E15Rik - - 14|14 A3 RIKEN cDNA 5430425E15 gene ncRNA 108167805 LOC108167805 - - 10 B1 60S ribosomal protein L15 pseudogene pseudo 100038702 Gm10730 - - - predicted gene 10730 unknown 667706 Gm8774 EG667706 - 6|6 F3 thioredoxin domain containing 9 pseudogene pseudo 71099 Mm.171300 NM_027673 ENSMUSG00000007591 Tssk4 1700020B19Rik|4933424F08Rik|TSK-4|TSSK-4 - 14|14 C3 testis-specific serine kinase 4 protein-coding 61377 D4Mit223 - - 4 61.54 cM DNA segment, Chr 4, Massachusetts Institute of Technology 223 unknown 112190 Remslp1 - - 4 31.66 cM rapid eye movement sleep 1 unknown 64385 Mm.486449 NM_022434 ENSMUSG00000024292 Cyp4f14 1300014O15Rik|cyp4f-14 - 17|17 B1 cytochrome P450, family 4, subfamily f, polypeptide 14 protein-coding 66153 Mm.381192 NM_025386 ENSMUSG00000073633 Fbxo36 0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e - 1 C5|1 43.43 cM F-box protein 36 protein-coding 105244569 Gm40162 - - 3|3 predicted gene, 40162 ncRNA 100034845 Fcsa2 - - 8 42.16 cM femoral cross-sectional area 2 unknown 105245557 XR_873668 Gm41001 - - 13 C1|13 predicted gene, 41001 ncRNA 108167780 Gm46198 - - 10 B2|10 predicted gene, 46198 pseudo 96971 C78660 - - - expressed sequence C78660 protein-coding 62846 D12Mit211 - - 12 49.85 cM DNA segment, Chr 12, Massachusetts Institute of Technology 211 unknown 100861755 Mm.382859 NM_001310449 ENSMUSG00000106445 Gm21190 - - 5 A2|5 predicted gene, 21190 protein-coding 667481 Mm.429473 Trav6d-5 Gm13969 - 14|14 C2 T cell receptor alpha variable 6D-5 other 100035379 Spmd4 - - - spermatogenesis defect 4 unknown 71779 Mm.27064 NM_027920 ENSMUSG00000025702 March8 1300017E09Rik|MARCH-VIII|Mir - 6|6 E3 membrane-associated ring finger (C3HC4) 8 protein-coding 69944 Mm.32118 NM_172403 ENSMUSG00000020491 2810021J22Rik AI449137 - 11|11 B1.3 RIKEN cDNA 2810021J22 gene protein-coding 102637009 XR_376025 Gm33924 - - 3 G1|3 predicted gene, 33924 ncRNA 100503575 Gm19777 - - 1 H6|1 98.33 cM prefoldin subunit 1-like pseudo 102636180 XR_378034 Gm33320 - - 6 F3|6 predicted gene, 33320 ncRNA 215061 Mm.261834 NM_178240 ENSMUSG00000053388 Trim50 - - 5|5 G2 tripartite motif-containing 50 protein-coding 100415981 Gm17852 - - 4|4 E2 espin-like pseudogene pseudo 62025 D1Mit509 - - 1 84.46 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 509 unknown 100034829 Sbmd3 - - - spinal bone mineral density 3 unknown 102632442 LOC102632442 - - 11 A2 glutamine synthetase-like pseudo 668970 Gm14375 - - X|X A1.1 actin, beta pseudogene pseudo 108168627 XM_017318835 LOC108168627 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 102641966 XR_869807 Gm38588 - - 7 E1|7 predicted gene, 38588 ncRNA 74880 Mm.399205 4930445B16Rik - - 2|2 RIKEN cDNA 4930445B16 gene protein-coding 100034989 Grwtj2 - - - growth trajectory 2 unknown 624759 Mm.491054 NR_040750 ENSMUSG00000106053 Gm20752 - - 3|3 H4 predicted gene, 20752 ncRNA 100124572 Vmn2r-ps136 - - Y|Y A1 vomeronasal 2, receptor, pseudogene 136 pseudo 29879 l7Rl2 In(7)4Rl-d|l(7)2Rl|l72Rl|p|pl-2 - - lethal, Chr 7, Russell 2 unknown 100316808 NR_035434 ENSMUSG00000084728 Mir1905 Mirn1905|mmu-mir-1905 - 3 F1|3 38.86 cM microRNA 1905 ncRNA 258136 Mm.377356 NM_001011846 ENSMUSG00000066240 Olfr517 MOR268-4 - 7|7 E3 olfactory receptor 517 protein-coding 105245921 XR_875169 Gm41301 - - 15 B3.1|15 predicted gene, 41301 ncRNA 493078 Lmr3 - - - leishmaniasis resistance 3 unknown 21115 T(2;12)47Dn T47Dn - - reciprocal translocation, Chr 2 and 12, Davisson 47 other 66861 Mm.21762 NM_024181 ENSMUSG00000027006 Dnajc10 1200006L06Rik|D2Ertd706e|ERdj5|JPDI - 2|2 C3 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 105242817 Mm.446769 XR_869586 ENSMUSG00000086863 Gm15543 - - 6 G3|6 77.37 cM predicted gene 15543 ncRNA 77705 Mm.159975 NM_029960 ENSMUSG00000027446 9230104L09Rik mCST E2 - 2|2 G3 RIKEN cDNA 9230104L09 gene protein-coding 56036 Mm.23492 NM_018856 ENSMUSG00000029068 Ccnl2 1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138 - 4 E2|4 87.47 cM cyclin L2 protein-coding 78458 Mm.401549 1700064N11Rik - - 5|5 RIKEN cDNA 1700064N11 gene protein-coding 545926 Gm5890 EG545926 - 7|7 A3 predicted gene 5890 pseudo 102636379 LOC102636379 - - 2 F3 prothymosin alpha pseudogene pseudo 106990 AU022178 - - - expressed sequence AU022178 unknown 257880 Mm.377281 NM_001011735 ENSMUSG00000075181 Olfr1066 MOR188-8|MOR256-52P - 2|2 D olfactory receptor 1066 protein-coding 72668 Mm.102183 NM_028317 ENSMUSG00000054074 Skida1 2810030E01Rik|5730507N06Rik|BB088113|DLN-1 - 2|2 A3 SKI/DACH domain containing 1 protein-coding 20618 Mm.282800 NM_011430 ENSMUSG00000023064 Sncg C79089|persyn - 14 B|14 20.81 cM synuclein, gamma protein-coding 19260 Mm.395 NM_008979 ENSMUSG00000027843 Ptpn22 70zpep|PEP|Ptpn8 - 3|3 F2.2 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) protein-coding 667716 Gm11789 - - 11|11 E2 predicted gene 11789 ncRNA 100034939 Ncilt - - - nuclear cytoplasmic invaginations in lung tumors unknown 100041766 NM_001141923 Gm9762 - - 3|3 E3 ubiquitin-conjugating enzyme E2D 2 pseudogene pseudo 100035368 Etax8 - - - ethanol induced ataxia 8 unknown 207143 Bbaa18 Bb18 - 10 34.72 cM B.burgdorferi-associated arthritis 18 unknown 105243145 XR_870259 Gm39145 - - 8 A2|8 predicted gene, 39145 ncRNA 71220 Mm.438575 4933427J07Rik - - 2|2 RIKEN cDNA 4933427J07 gene protein-coding 235320 Mm.457803 NM_001033324 ENSMUSG00000066687 Zbtb16 AI467657|PLZF|Zfp145|lu - 9 A5.3|9 26.47 cM zinc finger and BTB domain containing 16 protein-coding 102465619 NR_105989 ENSMUSG00000099043 Mir7022 Gm27291|mmu-mir-7022 - 4|4 E2 microRNA 7022 ncRNA 93925 D16Jhu64 503G8.T7 - - DNA segment, Chr 16, Johns Hopkins University 64 unknown 70325 Mm.390414 NM_027388 ENSMUSG00000045140 Pigw 2610044A17Rik|Gwt1 - 11|11 C phosphatidylinositol glycan anchor biosynthesis, class W protein-coding 102635665 XR_378347 Gm32945 - - 7 E1|7 predicted gene, 32945 ncRNA 108168793 XR_001783470 Gm46764 - - 2 F1|2 predicted gene, 46764 ncRNA 216873 Mm.432524 NM_172561 ENSMUSG00000018287 Spag7 5730443G10|ACRP|FSA-1|Fsa1l - 11 B3|11 43.21 cM sperm associated antigen 7 protein-coding 223918 Mm.385009 NM_001033277 ENSMUSG00000036966 Spryd3 BC008150 - 15|15 F2 SPRY domain containing 3 protein-coding 105247347 LOC105247347 - - - uncharacterized LOC105247347 ncRNA 75605 Mm.28995 NM_152895 ENSMUSG00000042207 Kdm5b 2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034 - 1 E4|1 58.24 cM lysine (K)-specific demethylase 5B protein-coding 17120 Mm.27250 NM_010752 ENSMUSG00000029554 Mad1l1 AI173502|AW550425|Mad1 - 5 G2|5 78.82 cM MAD1 mitotic arrest deficient 1-like 1 protein-coding 102465171 NR_105754 ENSMUSG00000098660 Mir6336 Gm27584|mmu-mir-6336 - 2|2 B microRNA 6336 ncRNA 387132 Mm.379565 NM_001001450 ENSMUSG00000023165 Ssxb2 - - X A1.1|X synovial sarcoma, X member B2 protein-coding 75739 Mm.133293 NM_001081287 ENSMUSG00000057440 Mpp7 1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955 - 18|18 A1 membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) protein-coding 66634 Mm.157070 NM_025676 ENSMUSG00000027353 Mcm8 5730432L01Rik - 2|2 F2 minichromosome maintenance 8 homologous recombination repair factor protein-coding 319582 Mm.180924 NM_176952 ENSMUSG00000039620 6430573F11Rik Kiaa1456|TRM9L|Trmt9b - 8|8 A4 RIKEN cDNA 6430573F11 gene protein-coding 100417245 Gm12805 - - 4|4 D1 crumbs homolog 1 pseudogene pseudo 102232 AU022186 - - - expressed sequence AU022186 unknown 102636475 XR_378724 Gm33532 - - 8 A1.1|8 predicted gene, 33532 ncRNA 62821 D13Mit250 - - 13 30.06 cM DNA segment, Chr 13, Massachusetts Institute of Technology 250 unknown 105246802 XR_878988 Gm42027 - - 8 C2|8 predicted gene, 42027 ncRNA 632482 Gm29689 - - 12 F2|12 predicted gene, 29689 pseudo 102636057 XR_391545 Gm33234 - - 7 C|7 predicted gene, 33234 ncRNA 100559 Mm.212589 NM_133894 ENSMUSG00000061906 Ugt2b38 9430041C03Rik|AA986709 - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide B38 protein-coding 102637679 Mm.99783 XR_374581 Gm13575 - - 2 C1.3|2 37.73 cM predicted gene 13575 ncRNA 110120536 LOC110120536 - - - VISTA enhancer mm1288 biological-region 319626 Mm.186748 NR_015610 ENSMUSG00000097736 9530059O14Rik - - 9|9 F4 RIKEN cDNA 9530059O14 gene ncRNA 111724 Mpmv43 Mpmv-43 - - modified polytropic murine leukemia virus 43 other 74103 Mm.120298 NM_028757 ENSMUSG00000053702 Nebl 1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl - 2|2 A3 nebulette protein-coding 493026 Nktcn2 - - - natural killer T cell numbers 2 unknown 108169034 XR_001784829 Gm46906 - - 5 B1|5 predicted gene, 46906 ncRNA 13841 Mm.257266 NM_010141 ENSMUSG00000028289 Epha7 Cek11|Ebk|Ehk3|Hek11|Mdk1 - 4 A4|4 12.42 cM Eph receptor A7 protein-coding 435554 Gm5686 EG435554 - 18|18 A1 RAE1 RNA export 1 homolog pseudogene pseudo 102634299 Gm31918 - - 12|12 predicted gene, 31918 ncRNA 102637784 Gm34509 - - 9|9 predicted gene, 34509 ncRNA 102631880 XR_376614 Gm30102 - - 4 D2.2|4 predicted gene, 30102 ncRNA 61331 D3Mit194 - - 3 64.43 cM DNA segment, Chr 3, Massachusetts Institute of Technology 194 unknown 546638 Ube2d4 EG546638|Gm5959 - 15|15 D1 ubiquitin-conjugating enzyme E2D 4 protein-coding 100048971 Wtmq4 mQTL10a - - weight module QTL 4 unknown 102639732 XR_384619 ENSMUSG00000116455 Gm35974 - - 16 A1|16 predicted gene, 35974 ncRNA 71365 Mm.490430 NM_027772 ENSMUSG00000038240 Pdss2 5430420P03Rik|Gm60|Plmp|kd|mDLP1 - 10 B2|10 22.91 cM prenyl (solanesyl) diphosphate synthase, subunit 2 protein-coding 100035861 Hdlcl2 - - 13 26.25 cM HDL cholesterol level 2 unknown 13494 Mm.3250 NM_007879 ENSMUSG00000020457 Drg1 AA408859|AI132520|DRG-1|NEDD-3|Nedd3 - 11|11 A1 developmentally regulated GTP binding protein 1 protein-coding 100418313 Gm14896 - - X|X E1 Ras-GTPase-activating protein SH3-domain binding protein 1 pseudogene pseudo 329460 Mm.377885 NM_001011517 ENSMUSG00000060827 Olfr1193 MOR226-1|MOR230-9|Olfr1193-ps1|Olfr1194-ps1 - 2|2 D olfactory receptor 1193 protein-coding 105245813 XR_874811 Gm41203 - - 14 D2|14 predicted gene, 41203 ncRNA 240518 Mm.277580 NM_172835 ENSMUSG00000024901 Peli3 6030441F14Rik|A930011L17|BC028931 - 19|19 A pellino 3 protein-coding 74686 Mm.307948 NM_029054 ENSMUSG00000027880 Slc25a54 4930443G12Rik|SCaMC-1like - 3|3 F3 solute carrier family 25, member 54 protein-coding 68877 Mm.289680 NM_026859 ENSMUSG00000022553 Maf1 1110068E11Rik|AU042856 - 15|15 D3 MAF1 homolog, negative regulator of RNA polymerase III protein-coding 100043908 Gm14237 - - 2|2 H3 predicted gene 14237 pseudo 105243185 XR_870423 Gm39174 - - 8 B1.1|8 predicted gene, 39174 ncRNA 11461 Mm.328431 NM_007393 ENSMUSG00000029580 Actb Actx|E430023M04Rik|beta-actin - 5 G2|5 81.8 cM actin, beta protein-coding 102639664 XR_386639 Gm35922 - - 19 C1|19 predicted gene, 35922 ncRNA 20183 Mm.3475 NM_009107 ENSMUSG00000015843 Rxrg Nr2b3 - 1 H2.3|1 74.99 cM retinoid X receptor gamma protein-coding 66869 Mm.334581 NM_181274 ENSMUSG00000054648 Zfp869 1200003I07Rik - 8|8 B3.3 zinc finger protein 869 protein-coding 100040038 Gm14606 - - X|X A4 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 102632139 Mm.406968 XR_375651 ENSMUSG00000104109 Gm30292 - - 3 C|3 predicted gene, 30292 ncRNA 665565 Gm7691 EG665565 - 15|15 D1 ribosomal protein L17 pseudogene pseudo 493152 Pfat2 - - 6 42.11 cM predicted fat percentage 2 unknown 61885 D1Mit314 - - 1 70.41 cM DNA segment, Chr 1, Massachusetts Institute of Technology 314 unknown 668257 Mm.95646 NM_001114084 ENSMUSG00000067597 Dgat2l6 9930021F22Rik - X|X C3 diacylglycerol O-acyltransferase 2-like 6 protein-coding 11789 Mm.384171 NM_007462 ENSMUSG00000005871 Apc AI047805|AU020952|AW124434|CC1|Min|mAPC - 18 B1|18 18.53 cM adenomatosis polyposis coli protein-coding 433022 Mm.380993 NM_001134480 ENSMUSG00000087141 Plcxd2 AW494639|EG433022 - 16|16 B5 phosphatidylinositol-specific phospholipase C, X domain containing 2 protein-coding 73666 Mm.292487 NM_028597 ENSMUSG00000025872 Thoc3 2410044K02Rik|AL033344 - 13|13 B1 THO complex 3 protein-coding 102638892 XR_881303 Gm35344 - - 4 B3|4 predicted gene, 35344 ncRNA 108168157 XR_001781251 Gm46451 - - 14 C1|14 predicted gene, 46451 ncRNA 108168213 Gm46496 - - 15 A1|15 predicted gene, 46496 pseudo 18155 Mm.16347 NM_010932 ENSMUSG00000045731 Pnoc N/OFQ|Npnc1|OFQ/N - 14|14 D1 prepronociceptin protein-coding 70290 2310079F09Rik - - 2|2 RIKEN cDNA 2310079F09 gene protein-coding 546905 Igkv8-31 EG546905|Gm5994 - 6|6 C1 immunoglobulin kappa chain variable 8-31 pseudo 109766 Tcp3 Tcp-3 - - t-complex protein 3 protein-coding 109280039 LOC109280039 Mm292 - - VISTA enhancer mm292 biological-region 116814 Actvty2 Act-2 - X 5.98 cM activity 2 unknown 102637184 XR_383696 Gm34061 - - 14 E2.2|14 predicted gene, 34061 ncRNA 105245871 XR_875001 Gm41255 - - 15 A1|15 predicted gene, 41255 ncRNA 225363 Mm.329353 NM_144866 ENSMUSG00000024360 Etf1 AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1 - 18|18 B1 eukaryotic translation termination factor 1 protein-coding 102642489 XR_868542 Gm38612 - - 5 G1.3|5 predicted gene, 38612 ncRNA 791383 Mm.403104 NR_033504 ENSMUSG00000055048 Gm9962 - - 7 B5|7 predicted gene 9962 ncRNA 27652 D1Dau6 - - - DNA segment, Chr 1, DA Underhill 6 unknown 667583 Trav5d-4 EG667583|Gm8713 - 14 C2|14 T cell receptor alpha variable 5D-4 other 100035703 Actre5 - - - activity response to ethanol 5 unknown 108167331 XR_865224 Gm45942 - - 1 A5|1 predicted gene, 45942 ncRNA 14756 Mm.291831 NM_008156 ENSMUSG00000021340 Gpld1 6330541J12Rik|AW546131 - 13 A3.1|13 10.79 cM glycosylphosphatidylinositol specific phospholipase D1 protein-coding 110668 Yb1b - - - YB-1 DNA binding protein related sequence b protein-coding 105245622 XR_873934 Gm41052 - - 13 D2.1|13 predicted gene, 41052 ncRNA 105245857 XR_874958 Gm41246 - - 14 E4|14 predicted gene, 41246 ncRNA 67692 Mm.54306 NM_183266 ENSMUSG00000050844 1700020N01Rik - - 10|10 A3 RIKEN cDNA 1700020N01 gene ncRNA 667737 Gm11652 - - 11|11 E1 basic leucine zipper and W2 domains 1 pseudogene pseudo 106838 Mm.439986 BB217838 - - - expressed sequence BB217838 unknown 100048620 LOC100048620 - - 2|2 E5 ribosomal protein L35A pseudogene pseudo 100217445 NR_028542 ENSMUSG00000093044 Snord8 MBII-28 - 14 C2|14 small nucleolar RNA, C/D box 8 snoRNA 109279966 LOC109279966 Mm489 - - VISTA enhancer mm489 biological-region 68511 Mm.310284 NM_001177964 ENSMUSG00000020633 Dcdc2c 1110015M06Rik - 12|12 A2 doublecortin domain containing 2C protein-coding 404336 Mm.377945 NM_207573 ENSMUSG00000107645 Olfr1380 GA_x5J8B7W6C8B-3023-2886 - 11|11 B1.2 olfactory receptor 1380 protein-coding 105245326 Gm40801 - - 10|10 predicted gene, 40801 ncRNA 85030 Mm.101198 NM_033042 ENSMUSG00000024793 Tnfrsf25 APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl - 4|4 E2 tumor necrosis factor receptor superfamily, member 25 protein-coding 668474 Ighv1-7 EG668474|Gm9190 - 12 F2|12 immunoglobulin heavy variable V1-7 other 101056052 Gm29767 - - 13 D2.3|13 predicted gene, 29767 pseudo 102637989 Gm34665 - - X|X predicted gene, 34665 ncRNA 100035099 Manln5 - - 4 33.96 cM mandible length 5 unknown 21647 Mm.440445 NM_011560 ENSMUSG00000079707 Tcte3 D17Leh117c|LC2|Tcte-3|Tctex-2|Tctex-4|Tctex2|Tctex4 - 17 A2|17 8.95 cM t-complex-associated testis expressed 3 protein-coding 105463122 Tip3 - - - transcribed intergenic polycomb 3 ncRNA 100312946 Vmn1r-ps90 - - - vomeronasal 1 receptor Vmn1r-ps90 pseudogene pseudo 100041886 Gm3565 - - 12 F1|12 high mobility group box 1 pseudogene pseudo 100416521 Gm16259 - - 14|14 E2.3 ribosomal protein L17 pseudogene pseudo 236983 Gm4913 EG236983 - X|X E1 S-adenosylhomocysteine hydrolase pseudogene pseudo 80334 Mm.160172 NM_030265 ENSMUSG00000029088 Kcnip4 AV032399|Calp|Calp250|KChIP4|KChIP4a - 5|5 B3 Kv channel interacting protein 4 protein-coding 110120422 LOC110120422 - - - VISTA enhancer mm1063 biological-region 110400 Evi23 - - - ecotropic viral integration site 23 protein-coding 26412 Mm.25860 NM_009006 ENSMUSG00000024948 Map4k2 AI385662|BL44|GCK|Rab8ip - 19|19 A mitogen-activated protein kinase kinase kinase kinase 2 protein-coding 102636214 Gm33346 - - 1|1 predicted gene, 33346 ncRNA 258635 Mm.271484 NM_146642 ENSMUSG00000068817 Olfr1140 MOR177-6 - 2|2 D olfactory receptor 1140 protein-coding 100137011 Mm.384404 Gm12689 - - - predicted gene 12689 protein-coding 320876 D930002L09Rik - - 3|3 RIKEN cDNA D930002L09 gene protein-coding 102640941 Gm36887 - - 3|3 predicted gene, 36887 ncRNA 110096 Rasl2-2 - - - RAS-like, family 2, locus 2 protein-coding 102638114 Mm.399114 Gm34753 - - 6|6 predicted gene, 34753 ncRNA 15455 Hpvc1 HC1 - 8|8 human papillomavirus 18 E5 central sequence motif gene 1 protein-coding 26371 Mm.45179 NM_025296 ENSMUSG00000003662 Ciao1 AW210570|Wdr39 - 2 F1|2 61.86 cM cytosolic iron-sulfur protein assembly 1 protein-coding 664923 Gm7408 EG664923 - X A3.1|X predicted pseudogene 7408 pseudo 100042194 Mm.330165 NR_045894 ENSMUSG00000086555 Gm13446 - - 2|2 B predicted gene 13446 ncRNA 670764 Mm.480250 NM_001166757 ENSMUSG00000094221 Vmn1r124 Gm9500 - 7 A3|7 vomeronasal 1 receptor 124 protein-coding 108168273 Gm46541 - - 16 C1.1|16 neo-calmodulin pseudogene pseudo 77117 Mm.440905 NM_175252 ENSMUSG00000074865 Zfp934 6720457D02Rik - 13|13 B3 zinc finger protein 934 protein-coding 546623 Gm5958 EG546623 - 14|14 E2.2 predicted pseudogene 5958 pseudo 100038659 Mm.448549 NR_045747 ENSMUSG00000115946 Mirt2 Gm10872|Gm24562 - 15 D3|15 myocardial infraction associated transcript 2 ncRNA 52690 Mm.159185 NM_028262 ENSMUSG00000056770 Setd3 2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e - 12 F1|12 59.23 cM SET domain containing 3 protein-coding 100417502 Gm18652 - - 18|18 B3 coiled-coil domain containing 53 pseudogene pseudo 320858 Mm.137356 NM_177278 ENSMUSG00000041565 L3mbtl4 A730037L19Rik|D930040M24Rik - 17|17 E1.2 L3MBTL4 histone methyl-lysine binding protein protein-coding 328370 Mm.259657 NM_177815 ENSMUSG00000052395 Rft1 D930025H04 - 14|14 B RFT1 homolog protein-coding 85058 D1Mit92 - - 1 54.7 cM DNA segment, Chr 1, Massachusetts Institute of Technology 92 unknown 74387 Mm.236220 NM_028905 ENSMUSG00000039851 4932438H23Rik 4931406G06Rik|AI550392 - 16|16 C3.3 RIKEN cDNA 4932438H23 gene protein-coding 171239 Mm.377195 NM_134205 ENSMUSG00000115267 Vmn1r76 V1rg4 - 7|7 A1 vomeronasal 1 receptor 76 protein-coding 329253 Mm.487858 NR_046167 ENSMUSG00000086264 Gm15850 6530439I21 - 1|1 E4 predicted gene 15850 ncRNA 170752 Mm.390149 NM_133217 ENSMUSG00000032066 Bco2 B-diox-II|Bcdo2|Bcmo2|CMO2 - 9|9 A5.3 beta-carotene oxygenase 2 protein-coding 408059 Mm.249297 NM_001198971 ENSMUSG00000091996 BC049352 SMIM35 - 9 A5.2|9 cDNA sequence BC049352 protein-coding 78653 Mm.391470 NM_175277 ENSMUSG00000045160 Bola3 1810056O20Rik - 6|6 C3 bolA-like 3 (E. coli) protein-coding 102632717 XR_388200 Gm30713 - - 8 E2|8 predicted gene, 30713 ncRNA 102635976 XR_378719 Gm33175 Gm45559 - 8 A1.1|8 predicted gene, 33175 ncRNA 102640588 XR_389232 Gm11769 - - 11 E2|11 83.96 cM predicted gene 11769 ncRNA 100417674 Gm18755 - - 10|10 D3 opioid growth factor receptor-like 1 pseudogene pseudo 27912 D16Ium53 - - - DNA segment, Chr 16, Indiana University Medical 53 unknown 11303 Mm.277376 NM_013454 ENSMUSG00000015243 Abca1 ABC-1|Abc1 - 4 B2|4 28.57 cM ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 100036144 Angfq2 - - - angiogenesis due to FGF2 QTL 2 unknown 102638832 Mm.112794 NR_151524 ENSMUSG00000099960 Gm28590 - - 1 E2.3|1 predicted gene 28590 ncRNA 329851 Mm.392470 NR_040669 ENSMUSG00000085967 Gm12530 D730003B17 - 4 B3|4 predicted gene 12530 ncRNA 109503 Alcp17 - - - alcohol preference locus 17, male specific unknown 102637575 XR_391566 Gm34350 Gm45103 - 7 C|7 predicted gene, 34350 ncRNA 62654 D14Mit174 - - 14 19.37 cM DNA segment, Chr 14, Massachusetts Institute of Technology 174 unknown 100041843 Defa-ps18 Gm15306 - 8|8 A2 defensin, alpha, pseudogene 18 pseudo 104264 Olfr14 - - - olfactory receptor 14 protein-coding 102467343 n-TKctt6 n-Tk6 - 13 A1|13 nuclear encoded tRNA lysine 6 (anticodon CTT) tRNA 102635110 Gm32530 - - 5|5 predicted gene, 32530 ncRNA 100134990 Mm.247328 NR_004857 ENSMUSG00000085415 Selenok-ps1 Gm12060 - 11|11 A3.2 selenoprotein K, pseudogene 1 pseudo 102632835 XR_377172 Gm30804 - - 5 G2|5 predicted gene, 30804 ncRNA 14114 Mm.297992 NM_010180 ENSMUSG00000006369 Fbln1 - - 15|15 E2 fibulin 1 protein-coding 638634 Ighv1-70 EG638634|Gm7245 - 12|12 F2 immunoglobulin heavy variable 1-70 other 665513 Gm7667 EG665513 - 16 C3.3|16 ribosomal protein L13 pseudogene pseudo 72699 Mm.440138 NM_023684 ENSMUSG00000090077 Lime1 2810038K19Rik|LIME - 2|2 H4 Lck interacting transmembrane adaptor 1 protein-coding 399570 Mm.71924 NR_040437 ENSMUSG00000085843 Kank4os A730085A09Rik - 4|4 C6 KN motif and ankyrin repeat domains 4, opposite strand ncRNA 100042006 Gm3621 - - 19|19 C1 phytanoyl-CoA hydroxylase pseudogene pseudo 16605 Klk1b10-ps Klk-ps3|mGk-10 - 7 B3|7 28.47 cM kallikrein 1-related peptidase b10, pseudogene pseudo 621818 NM_001045541 Gm9785 - - X D|X polycomb group ring finger 6 pseudogene pseudo 27659 D1Dau4 - - - DNA segment, Chr 1, DA Underhill 4 unknown 109280093 LOC109280093 Mm876 - - VISTA enhancers mm876 and mm999 biological-region 665689 Gm12663 - - 11|11 A2 predicted gene 12663 pseudo 20377 Mm.281691 NM_013834 ENSMUSG00000031548 Sfrp1 2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1 - 8 A2|8 11.48 cM secreted frizzled-related protein 1 protein-coding 102640319 XR_386166 Gm36416 - - 18 B2|18 predicted gene, 36416 ncRNA 108406 Xmmv10 Env-10|Xmmv-10 - - xenotropic-MCF leukemia virus 10 other 102632662 Gm30680 - - 2|2 predicted gene, 30680 ncRNA 257847 Gm12855 GA_x5J8B7W3BSW-40181-41086 - 4|4 D2.1 olfactory receptor GA_x5J8B7W3BSW-40181-41086 pseudo 751535 NR_030430 ENSMUSG00000076286 Mir672 Mirn672|mir-672|mmu-mir-672 - X D|X microRNA 672 ncRNA 112057 Phrtq1 Hrtq1 - - percent heart QTL 1 unknown 76365 Mm.158789 NM_023814 ENSMUSG00000032419 Tbx18 2810012F10Rik|2810404D13Rik - 9 E3.1|9 47.06 cM T-box18 protein-coding 320274 9330209N08Rik - - 16|16 RIKEN cDNA 9330209N08 gene protein-coding 102640402 Gm28936 - - Y|Y predicted gene 28936 protein-coding 100158259 Gm17068 - - 19|19 A glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 13845 Mm.6972 NM_010143 ENSMUSG00000005958 Ephb3 AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6 - 16|16 B1 Eph receptor B3 protein-coding 16247 In(14)36Rk In36Rk - - inversion, Chr 14, Roderick 54 other 27401 Mm.35584 NM_013787 ENSMUSG00000054115 Skp2 4930500A04Rik|FBXL1|FWD1|p45 - 15|15 A1 S-phase kinase-associated protein 2 (p45) protein-coding 13067 Mm.4872 NM_009989 ENSMUSG00000056436 Cyct T-Cc - 2 C3|2 44.94 cM cytochrome c, testis protein-coding 668035 XM_011241955 Olfr687 EG668035|Gm8937|MOR40-11 - 7 E3|7 olfactory receptor 687 protein-coding 100035535 Lith9 - - 17 60.67 cM lithogenic gene 9 unknown 71997 Mm.150977 NM_028047 ENSMUSG00000002210 Smg9 1500002O20Rik|AI429693|N28092 - 7|7 A3 smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans) protein-coding 102633630 XR_374885 Gm31413 - - 2 E4|2 predicted gene, 31413 ncRNA 192102 Stheal5 - - 6 39.51 cM soft tissue heal 5 unknown 56362 Mm.23502 NM_019878 ENSMUSG00000029269 Sult1b1 ST1B1|St2b2 - 5|5 E1 sulfotransferase family 1B, member 1 protein-coding 102639507 XR_385230 Gm16168 - - 17 A1|17 7.8 cM predicted gene 16168 ncRNA 105246469 XR_877483 Gm41754 - - 18 E1|18 predicted gene, 41754 ncRNA 258395 Mm.377479 NM_146400 ENSMUSG00000044039 Olfr1288 MOR245-9 - 2|2 E3 olfactory receptor 1288 protein-coding 260408 Mm.79114 NM_153172 ENSMUSG00000047257 Prss45 Tespl|Tessp5 - 9|9 F2 protease, serine 45 protein-coding 102640782 XR_384955 Gm36766 - - 16 C2|16 predicted gene, 36766 ncRNA 100416504 Gm18132 - - 13|13 A3.3 predicted gene, 18132 pseudo 100035871 Bwtq12 - - 15 30.86 cM body weight QTL 12 unknown 100040099 Gm10784 - - 13|13 A5 immediate early response 3 interacting protein 1 pseudogene pseudo 30795 Mm.28480 NM_013902 ENSMUSG00000020949 Fkbp3 25kDa|FKBP-3|FKBP25 - 12|12 C1 FK506 binding protein 3 protein-coding 320557 Mm.458280 NM_001100458 ENSMUSG00000041817 Fam169a B230112C05Rik|SLAP75 - 13|13 D1 family with sequence similarity 169, member A protein-coding 102639983 XR_870180 Gm36166 - - 8 A1.3|8 predicted gene, 36166 ncRNA 114871 Mm.362025 NM_054063 ENSMUSG00000030373 Psg28 cea16 - 7|7 A3 pregnancy-specific glycoprotein 28 protein-coding 21321 T(X;7)3Neu T3Neu - - reciprocal translocation, Chr X and 7, Neuhauser-Klaus 3 other 387136 NR_029528 ENSMUSG00000070144 Mir1a-1 Mir1-1|Mirn1-1|Mirn1b|Mirn1c|Mirn1d|mir-1a-1|mmu-mir-1-1|mmu-mir-1a-1 - 2|2 H4 microRNA 1a-1 ncRNA 623045 Rpl36-ps7 Gm12456 - 3|3 F2.2 ribosomal protein L36, pseudogene 7 pseudo 52015 D10Ertd276e - - 10 21.63 cM DNA segment, Chr 10, ERATO Doi 276, expressed unknown 22334 Mm.262327 NM_011695 ENSMUSG00000021771 Vdac2 Vdac6|mVDAC2|mVDAC6 - 14 A3|14 11.91 cM voltage-dependent anion channel 2 protein-coding 69444 Mm.275677 NM_027083 ENSMUSG00000020945 Lyzl6 1700023H08Rik|Lyc1|Lyzb - 11|11 E1 lysozyme-like 6 protein-coding 71342 Mm.410782 NR_040541 ENSMUSG00000106002 5430434I15Rik - - 3|3 B RIKEN cDNA 5430434I15 gene ncRNA 73149 Mm.25684 NM_153197 ENSMUSG00000043832 Clec4a3 3110037K17Rik|Dcir3 - 6|6 F2 C-type lectin domain family 4, member a3 protein-coding 76487 Mm.44745 NM_029628 ENSMUSG00000050423 Ppp1r3g 1600032L17Rik - 13|13 A3.3 protein phosphatase 1, regulatory (inhibitor) subunit 3G protein-coding 100416041 Gm17887 - - 3|3 B CD164 antigen pseudogene pseudo 100417756 Gm16580 - - 17|17 A3.3 poly(A) binding protein, cytoplasmic 1 pseudogene pseudo 268281 Mm.133101 NM_172937 ENSMUSG00000090112 Shprh 2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05 - 10|10 A1 SNF2 histone linker PHD RING helicase protein-coding 100861598 Mm.436648 XR_001782889 Gm21064 - - Y A1|Y predicted gene, 21064 protein-coding 404312 Mm.271395 NM_207552 ENSMUSG00000049864 Olfr250 MOR170-14 - 9|9 A5.1 olfactory receptor 250 protein-coding 21287 T(9;17)10Ad T10Ad - - reciprocal translocation, Chr 9 and 17, Adler 10 other 105242890 XR_880195 Gm38975 - - 11 D|11 predicted gene, 38975 ncRNA 70699 Mm.261208 NM_027513 ENSMUSG00000038759 Nup205 3830404O05Rik|AV248391|mKIAA0225 - 6|6 B1 nucleoporin 205 protein-coding 404467 Olfr1071 - - 2|2 olfactory receptor 1071 protein-coding 96893 D530037H12Rik C79576 - - RIKEN cDNA D530037H12 gene protein-coding 78715 D530015H24Rik - - 13|13 RIKEN cDNA D530015H24 gene protein-coding 105245003 XR_870719 ENSMUSG00000110924 Gm40518 - - 9 A5.3|9 predicted gene, 40518 ncRNA 100039888 Gm11223 - - 4|4 C2 stathmin 1 pseudogene pseudo 70497 Mm.403318 NM_144529 ENSMUSG00000030766 Arhgap17 5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15 - 7|7 F3 Rho GTPase activating protein 17 protein-coding 100043797 Gm4654 - - 14 E2.3|14 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 665046 Gm7463 EG665046 - 6|6 B1 slowmo homolog 2 pseudogene pseudo 72094 Mm.482739 NM_028094 ENSMUSG00000035780 Ugt2a3 2010321J07Rik - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide A3 protein-coding 100039274 Gm13555 - - 2|2 C1.3 predicted gene 13555 pseudo 100035815 Bwnd4wk7 - - - body weight, NMR1 x DBA, 4 week, QTL 7 unknown 105243149 XR_870274 Gm39148 - - 8 A2|8 predicted gene, 39148 ncRNA 104258 Lyb3 Lyb-3 - - B-lymphocyte antigen 3 protein-coding 16342 Eif3s6-ps1 Gm11994|Int6-ps1 - 11 A1|11 6.13 cM eukaryotic translation initiation factor 3, subunit 6, pseudogene 1 pseudo 435206 Mm.377965 NM_001010838 ENSMUSG00000095569 Taar7d taR-7d - 10|10 A4 trace amine-associated receptor 7D protein-coding 53788 D0Tu31 D17Tu31 - - DNA segment, Tubingen 31 unknown 102467472 n-TRtct1 n-Tr21 - 19 A|19 nuclear encoded tRNA arginine 1 (anticodon TCT) tRNA 666594 Gm8181 EG666594 - 18|18 B3 predicted gene 8181 pseudo 108167691 XR_001779327 Gm46135 - - 9 F4|9 predicted gene, 46135 ncRNA 228355 Mm.36410 NM_145527 ENSMUSG00000040687 Madd 9630059K23Rik|IG20 - 2|2 E1 MAP-kinase activating death domain protein-coding 110959 Mm.410206 NM_033080 ENSMUSG00000034875 Nudt19 D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s - 7 B2|7 21.37 cM nudix (nucleoside diphosphate linked moiety X)-type motif 19 protein-coding 100043219 Gm13975 - - 2|2 E4 ribosomal protein L7A pseudogene pseudo 75002 Mm.261400 NM_183109 ENSMUSG00000045631 Tmprss12 4930478A21Rik - 15|15 F1 transmembrane (C-terminal) protease, serine 12 protein-coding 73255 Mm.307720 XR_384925 ENSMUSG00000073976 1700026J12Rik - - 16|16 B5 RIKEN cDNA 1700026J12 gene unknown 102637267 XR_389175 Gm34128 - - 11 E2|11 predicted gene, 34128 ncRNA 17748 Mm.192991 NM_013602 ENSMUSG00000031765 Mt1 MT-I|Mt-1 - 8 C5|8 46.34 cM metallothionein 1 protein-coding 100316932 Mm.484709 NR_033168 ENSMUSG00000064493 Snora28 MBI-13 - 12 F1|12 61.03 cM small nucleolar RNA, H/ACA box 28 snoRNA 21309 T(X;4)8Rl T8Rl - - reciprocal translocation, Chr X and 4, Russell 8 other 24112 Mm.89985 NM_011911 ENSMUSG00000095932 Vmn1r49 V1r5|V1rb2|VRi2 - 6 D1|6 40.02 cM vomeronasal 1, receptor 49 protein-coding 64009 Mm.331626 NM_022027 ENSMUSG00000096054 Syne1 8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1 - 10|10 A1 spectrin repeat containing, nuclear envelope 1 protein-coding 78612 Mm.410766 9530034A14Rik - - 3|3 RIKEN cDNA 9530034A14 gene protein-coding 66148 Mm.248046 NM_025384 ENSMUSG00000022013 Dnajc15 1110003P16Rik|Dnajd1 - 14|14 D3 DnaJ heat shock protein family (Hsp40) member C15 protein-coding 492866 Eila3 - - - ethanol induced locomotor activity 3 unknown 100036456 Pltq2 - - - platelet quantitative locus 2 unknown 112163566 AA210234 - - - expressed sequence AA210234 protein-coding 100503878 Zfp683 Gm13060|Hobit - 4 D3|4 66.5 cM zinc finger protein 683 pseudo 243308 Mm.36612 NM_183025 ENSMUSG00000056014 A430033K04Rik C86988 - 5|5 G2 RIKEN cDNA A430033K04 gene protein-coding 104041 Lop9 Lop-9 - - lens opacity 9 protein-coding 52762 D3Bwg0800e - - - DNA segment, Chr 3, Brigham & Women's Genetics 0800 expressed unknown 27820 349F04R - - - DNA segment, 349F04R (Research Genetics) unknown 108168663 XM_017318874 LOC108168663 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 14612 Mm.24615 NM_008120 ENSMUSG00000050234 Gja4 AU020209|AW558810|Cnx37|Cx37|Gja-4 - 4 D2.2|4 61.47 cM gap junction protein, alpha 4 protein-coding 100861868 Gm21282 - - Y|Y predicted gene, 21282 protein-coding 62688 D16Mit127 - - 16 33.65 cM DNA segment, Chr 16, Massachusetts Institute of Technology 127 unknown 108168453 XM_017318657 Gm15262 - - X F4|X 73.95 cM predicted gene 15262 protein-coding 102635441 XR_382263 Gm32778 - - 13 A4|13 predicted gene, 32778 ncRNA 258582 Mm.377577 NM_146589 ENSMUSG00000057761 Olfr1022 MOR196-1 - 2|2 D olfactory receptor 1022 protein-coding 110879 Ltrm1 Ltrm-1 - - LTR mink cell focus forming murine leukemia viral locus 1 protein-coding 102640489 Gm15828 - - 16|16 38.88 cM predicted gene 15828 pseudo 72484 XR_377738 2610300M13Rik Gm44029 - 6|6 C1 RIKEN cDNA 2610300M13 gene ncRNA 493114 Prnr1 - - 5 63.84 cM prion resistance 1 unknown 102632458 XR_388638 Gm30525 - - 11 B1.3|11 predicted gene, 30525 ncRNA 171038 Chab5 - - 19 13.18 cM cholesterol absorption 5 unknown 619320 4930527B05Rik - - - RIKEN cDNA 4930527B05 gene protein-coding 85132 D9Mit167 - - 9 45.88 cM DNA segment, Chr 9, Massachusetts Institute of Technology 167 unknown 102636227 XR_374026 Gm33355 - - 2 A3|2 predicted gene, 33355 ncRNA 101249 AU021805 - - - expressed sequence AU021805 unknown 100885830 NR_049191 ENSMUSG00000093615 Mir5618 Gm23685|mmu-mir-5618 - 9|9 A1 microRNA 5618 ncRNA 108168557 XM_017318758 ENSMUSG00000100856 LOC108168557 - - Y C3 X-linked lymphocyte-regulated protein PM1-like protein-coding 16821 Mm.123925 NM_010695 ENSMUSG00000026919 Lcn4 A630045M08Rik|Vnsp2 - 2|2 A3 lipocalin 4 protein-coding 108129 Hmgcs1-rs1 - - - 3-hydroxy-3-methylglutaryl-Coenzyme A synthase, related sequence 1 protein-coding 100417249 Gm18481 - - 6|6 A1 crumbs homolog 1 pseudogene pseudo 105244905 Gm40429 - - 12|12 predicted gene, 40429 ncRNA 236573 Mm.425261 NM_172777 ENSMUSG00000029298 Gbp9 - - 5|5 E5 guanylate-binding protein 9 protein-coding 18024 Mm.1025 NM_010902 ENSMUSG00000015839 Nfe2l2 Nrf2 - 2 C3|2 44.75 cM nuclear factor, erythroid derived 2, like 2 protein-coding 70050 2600014K08Rik - - 18|18 RIKEN cDNA 2600014K08 gene protein-coding 108043 Mm.110444 NM_027454 ENSMUSG00000031492 Chrnb3 5730417K16Rik|Acrb3 - 8|8 A2 cholinergic receptor, nicotinic, beta polypeptide 3 protein-coding 102632644 Gm30666 - - 8 A1.1|8 predicted gene, 30666 pseudo 320622 B930068K11Rik - - 2|2 RIKEN cDNA B930068K11 gene protein-coding 21119 T(2;14)48H T48H - - reciprocal translocation, Chr 2 and 14, Harwell 48 other 105246390 Gm41682 - - 18|18 predicted gene, 41682 ncRNA 56707 Mm.448367 NM_019940 ENSMUSG00000087598 Zfp111 - - 7|7 A3 zinc finger protein 111 protein-coding 100913185 Gm29700 - - 1 F|1 glutathione S-transferase, mu 4 pseudogene pseudo 623241 Gm6411 EG623241 - 13|13 C3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene pseudo 102640418 Gm36483 - - 1|1 predicted gene, 36483 ncRNA 140723 Mm.87663 NM_080644 ENSMUSG00000040373 Cacng5 - - 11|11 E1 calcium channel, voltage-dependent, gamma subunit 5 protein-coding 21232 T(6;13)3Gso T3Gso - - reciprocal translocation, Chr 6 and 13, Generoso 3 other 107686 Mm.29135 NM_026943 ENSMUSG00000040824 Snrpd2 1810009A06Rik|SMD2 - 7|7 A3 small nuclear ribonucleoprotein D2 protein-coding 109609 Es23 Es-23|Es-23e|Es-23t|Es23-e|Es23-t - - esterase 23 protein-coding 77951 Mm.197640 NM_030013 ENSMUSG00000049439 Cyp20a1 A930011N14Rik|Cypm - 1|1 C2 cytochrome P450, family 20, subfamily a, polypeptide 1 protein-coding 98429 Mm.40367 AI834762 - - - expressed sequence AI834762 unknown 60974 D13Mit7 - - - DNA segment, Chr 13, Massachusetts Institute of Technology 7 unknown 102633163 XR_376247 Gm31060 - - 3 H3|3 predicted gene, 31060 ncRNA 27836 D2Dcr11 - - - DNA segment, Chr 2, Derry C. Roopenian 11 unknown 100307069 Gm17817 - - X B|X 38.38 cM predicted gene, 17817 pseudo 102633662 Gm31433 - - 9|9 predicted gene, 31433 protein-coding 80982 Mm.160389 NM_030728 ENSMUSG00000052353 Cemip 12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199 - 7 D3|7 48.35 cM cell migration inducing protein, hyaluronan binding protein-coding 70405 Mm.20079 NM_027416 ENSMUSG00000063130 Calml3 2310068O22Rik|AI326174 - 13|13 A1 calmodulin-like 3 protein-coding 102635697 XR_383675 Gm32969 - - 14 E1|14 predicted gene, 32969 ncRNA 404285 Mm.377929 NM_207544 ENSMUSG00000058399 Vmn1r64 V1rd11 - 7|7 A1 vomeronasal 1 receptor 64 protein-coding 100042049 Mm.21724 NR_004442 Gm15421 - - 5|5 A3 ribosomal protein L22 like 1 pseudogene pseudo 20182 Mm.1243 NM_011306 ENSMUSG00000039656 Rxrb AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub - 17 B1|17 17.98 cM retinoid X receptor beta protein-coding 102639166 XR_868712 Gm35541 - - 5 G3|5 predicted gene, 35541 ncRNA 70509 5730405N03Rik - - 14|14 E4 RIKEN cDNA 5730405N03 gene unknown 224171 Mm.24491 NM_172616 ENSMUSG00000033031 C330027C09Rik AA408511|AU018569|Cip2a|Kiaa1524 - 16|16 B5 RIKEN cDNA C330027C09 gene protein-coding 105245791 Mm.220387 XR_874729 Gm41183 - - 14 D1|14 predicted gene, 41183 ncRNA 223483 Mm.395017 XR_875150 A830021M18Rik A830021M18 - 15|15 B3.1 RIKEN cDNA A830021M18 gene ncRNA 105242878 XR_881896 Gm38966 - - 7 A3|7 predicted gene, 38966 ncRNA 109279884 LOC109279884 Mm16 - - VISTA enhancer mm16 biological-region 27628 D11Moh3 - - 11 59.01 cM DNA segment, Chr 11, KL Mohlke 3 unknown 100041236 Gm3222 - - 17 A2|17 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105245452 XR_873141 Gm40904 - - 13 A1|13 predicted gene, 40904 ncRNA 105245354 Gm40825 - - 11|11 predicted gene, 40825 protein-coding 100043013 Mm.480289 NM_001166838 ENSMUSG00000096813 Vmn1r126 Gm4170 - 7 A3|7 vomeronasal 1 receptor 126 protein-coding 100861717 Gm21160 - - Y|Y predicted gene, 21160 protein-coding 102637136 Gm34023 - - 3 A1|3 predicted gene, 34023 pseudo 52377 Mm.29997 NM_026555 ENSMUSG00000019539 Rcn3 6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49 - 7 B3|7 29.11 cM reticulocalbin 3, EF-hand calcium binding domain protein-coding 108276 Eif4a-ps2 - - - eukaryotic translation initiation factor 4A, pseudogene 2 pseudo 94093 Mm.195036 NM_053170 ENSMUSG00000033014 Trim33 8030451N04Rik|AI413936|Ecto|Tif1g - 3|3 F2.2 tripartite motif-containing 33 protein-coding 102636269 XM_006541414 Gm33383 - - X A3.3|X predicted gene, 33383 protein-coding 94041 Mm.84927 NM_053156 ENSMUSG00000020636 Allc 1700012B22Rik|Alc - 12 A2|12 10.97 cM allantoicase protein-coding 66687 Mm.22252 NM_025706 ENSMUSG00000020130 Tbc1d15 4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP - 10|10 D2 TBC1 domain family, member 15 protein-coding 100502743 Gm13369 - - 2|2 16.89 cM predicted gene 13369 pseudo 18992 Mm.129387 NM_008899 ENSMUSG00000095139 Pou3f2 9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7 - 4 A3|4 9.73 cM POU domain, class 3, transcription factor 2 protein-coding 73977 Mm.414915 NR_045961 ENSMUSG00000093472 4930438E09Rik - - 14|14 D1 RIKEN cDNA 4930438E09 gene ncRNA 258732 Mm.377662 NM_146737 ENSMUSG00000109631 Olfr494 MOR204-10 - 7|7 E3 olfactory receptor 494 protein-coding 667507 XM_017315659 Gm8674 EG667507 - 13|13 A5 predicted gene 8674 protein-coding 21217 T(5;16)53H T53H - - reciprocal translocation, Chr 5 and 16, Harwell 53 other 100036526 Gm9887 - - - predicted gene 9887 protein-coding 665321 Gm7584 EG665321 - 10|10 A3 chromodomain protein, Y chromosome-like pseudogene pseudo 100861700 Gm21147 - - Y A1|Y predicted gene, 21147 pseudo 108168540 XM_017318727 LOC108168540 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 71990 Mm.24495 NM_028041 ENSMUSG00000029599 Ddx54 2410015A15Rik|AI414901|DP97 - 5|5 F DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 protein-coding 111831 Iapls2-18 - - - intracisternal A particle, lymphocyte specific 2-18 other 102634181 Gm21890 - - Y|Y predicted gene, 21890 protein-coding 74016 Mm.65691 NM_028716 ENSMUSG00000026873 Phf19 3110009G19Rik|3321402G02Rik - 2|2 B PHD finger protein 19 protein-coding 27756 Mm.165735 NM_030597 ENSMUSG00000007050 Lsm2 D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP - 17 B1|17 18.52 cM LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 61259 D2Mit151 - - 2 18.92 cM DNA segment, Chr 2, Massachusetts Institute of Technology 151 unknown 102637270 XR_373778 Gm34130 - - 1 H5|1 predicted gene, 34130 ncRNA 108167538 Gm45434 - - 8 C1|8 60S ribosomal protein L37 pseudogene pseudo 105244496 XR_867459 Gm40093 - - 3 F2.1|3 predicted gene, 40093 ncRNA 263305 Gm5038 EG263305 - 11|11 B1.3 piggyBac transposable element derived 2 (Pgbd2) pseudogene pseudo 102636431 XR_378040 Gm33496 - - 6 F3|6 predicted gene, 33496 ncRNA 67541 Mm.483178 4932416J16Rik - - 4|4 RIKEN cDNA 4932416J16 gene protein-coding 68488 Mm.338835 NR_138560 1110002J07Rik - - 10|10 B5.1 RIKEN cDNA 1110002J07 gene ncRNA 109279985 LOC109279985 Mm716 - - VISTA enhancer mm716 biological-region 207785 Mm.294969 NM_153407 ENSMUSG00000044636 Csrnp2 CSRNP-2|Csnrp2|taip-12 - 15|15 F1 cysteine-serine-rich nuclear protein 2 protein-coding 111282 Ugt1a1-rs1 Gnt1-rs - - UDP glucuronosyltransferase 1 family, polypeptide A1, related sequence 1 pseudo 102641752 Gm38574 - - 8 E2|8 predicted gene, 38574 pseudo 22362 Mm.57574 NM_016982 ENSMUSG00000059305 Vpreb1 CD179a|Vpreb-1 - 16 A3|16 10.46 cM pre-B lymphocyte gene 1 protein-coding 100047501 LOC100047501 - - 11|11 ribosomal protein S16 pseudogene pseudo 237073 Mm.256670 NM_153586 ENSMUSG00000031433 Rbm41 BB131279|D330023I21Rik - X|X F1 RNA binding motif protein 41 protein-coding 100417208 Gm18452 - - 5|5 D crumbs homolog 1 pseudogene pseudo 102634482 Gm32056 - - 10|10 predicted gene, 32056 protein-coding 108942767 LOC108942767 - - - Nanog 5' regulatory region biological-region 216543 Mm.260314 NM_172260 ENSMUSG00000044066 Cep68 6030463E10Rik|AI481761|BC027174|Kiaa0582 - 11 A3.1|11 12.92 cM centrosomal protein 68 protein-coding 108168476 Gm14883 - - X A1.3|X 13.65 cM up-regulated during skeletal muscle growth protein 5 pseudogene pseudo 360129 D17Brg153 - - - DNA segment, Chr 17, David E. Bergstrom 153 unknown 102467259 n-TNgtt12 n-Tn12 - 3 F2.1|3 nuclear encoded tRNA asparagine 12 (anticodon GTT) tRNA 102638782 Gm35264 - - 4|4 predicted gene, 35264 ncRNA 102638468 XR_001782246 Gm29050 - - 17 A1|17 predicted gene 29050 ncRNA 56838 Mm.143745 NM_020279 ENSMUSG00000074715 Ccl28 CCK1|MEC|Scya28 - 13|13 D2.3 chemokine (C-C motif) ligand 28 protein-coding 109555 Pt - - - pintail unknown 211187 Mm.121498 NM_172492 ENSMUSG00000055003 Lrtm2 A230084J22|AI841794 - 6|6 F1 leucine-rich repeats and transmembrane domains 2 protein-coding 17876 Mm.18535 NM_010852 ENSMUSG00000027201 Myef2 9430071B01|mKIAA1341 - 2 F1|2 61.16 cM myelin basic protein expression factor 2, repressor protein-coding 97372 C79461 - - - expressed sequence C79461 protein-coding 100503376 Gm19663 - - 13 A5|13 25.83 cM predicted gene, 19663 pseudo 102634775 Mm.154141 NR_155455 Gm32278 - - 16 A1|16 predicted gene, 32278 ncRNA 100504504 4833423F13Rik - - 16|16 RIKEN cDNA 4833423F13 gene ncRNA 258300 Mm.391211 NM_146303 ENSMUSG00000049498 Olfr1449 MOR202-34 - 19|19 A olfactory receptor 1449 protein-coding 78019 Mm.243845 NR_131107 ENSMUSG00000114953 4930519K11Rik - - 14|14 A3 RIKEN cDNA 4930519K11 gene ncRNA 100462895 Gm13350 - - 2 A3|2 12.9 cM GAR1 ribonucleoprotein homolog pseudogene pseudo 100041927 Gm3577 - - 10 B3|10 predicted gene 3577 protein-coding 105244258 XR_866615 Gm39900 - - 2 E3|2 predicted gene, 39900 ncRNA 108069 Mm.318966 NM_181850 ENSMUSG00000003974 Grm3 0710001G23Rik|Gprc1c|mGlu3|mGluR3 - 5|5 A1 glutamate receptor, metabotropic 3 protein-coding 109902 Esl1 - - - early lymphoma of SL 1 protein-coding 328448 Mm.453009 NM_001037936 Gm6999 E130119H08|EG629734 - 14|14 D3 predicted gene 6999 unknown 102636998 Gm33915 - - 4|4 predicted gene, 33915 pseudo 108168025 XR_001780680 Gm46373 - - 12 E|12 predicted gene, 46373 ncRNA 100416393 Gm12149 - - 11|11 B1.1 predicted gene 12149 pseudo 53765 D7H19S51 D19S51h - - DNA segment, Chr 7, human D19S51 unknown 100042872 Gm10112 - - X|X E1 developmental pluripotency associated 5 pseudogene pseudo 664723 Mm.45302 NM_001039941 Cypt8 - - - cysteine-rich perinuclear theca 8 protein-coding 102467246 n-TRacg6 n-Tr6 - 14 C2|14 nuclear encoded tRNA arginine 6 (anticodon ACG) tRNA 108167902 XR_001780221 Gm46282 - - 11 B1.3|11 predicted gene, 46282 ncRNA 21267 T(7;18)50H T50H - - reciprocal translocation, Chr 7 and 18, Harwell 50 other 667599 Mm.484993 NM_001166756 ENSMUSG00000096601 Gm8720 EG667599|Vmn1r164 - 7|7 A3 predicted gene 8720 protein-coding 68735 Mm.25585 NM_026826 ENSMUSG00000016833 Mrps18c 1110037D14Rik - 5|5 E4 mitochondrial ribosomal protein S18C protein-coding 668744 Gm13886 - - 2|2 E2 TAR DNA binding protein pseudogene pseudo 665255 Mm.425373 NM_001081405 ENSMUSG00000066820 Vmn2r28 EG665255 - 7|7 A1 vomeronasal 2, receptor 28 protein-coding 60597 Mm.173337 NM_021921 ENSMUSG00000022619 Mapk8ip2 3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148 - 15|15 E3 mitogen-activated protein kinase 8 interacting protein 2 protein-coding 100502864 Gm15756 - - 6|6 40.16 cM predicted gene 15756 ncRNA 408077 D6Wum33 - - - DNA segment, Chr 6, Washington University School of Medicine 33 unknown 668892 Gm14245 - - 2|2 F1 poly (A) polymerase alpha pseudogene pseudo 100039028 Mm.482557 NM_001164526 ENSMUSG00000073834 Mup11 Gm12549 - 4|4 B3 major urinary protein 11 protein-coding 105247165 Gm42313 - - 4 A3|4 predicted gene, 42313 pseudo 100041107 Gm3142 - - 15 D3|15 predicted gene 3142 protein-coding 100043574 Gm4526 - - 7 A3|7 predicted gene 4526 pseudo 66904 Mm.335385 NM_025835 ENSMUSG00000032527 Pccb 1300012P06Rik|AI314687|R74805 - 9|9 E4 propionyl Coenzyme A carboxylase, beta polypeptide protein-coding 75451 Mm.396165 NR_126462 ENSMUSG00000108800 1700011C11Rik - - 7|7 D1 RIKEN cDNA 1700011C11 gene ncRNA 101055769 Mm.421401 NR_105031 Gm12596 - - 4 B3|4 32.47 cM predicted gene 12596 ncRNA 78107 4930425F17Rik - - 2|2 RIKEN cDNA 4930425F17 gene protein-coding 107620 Evi10 - - - ecotropic viral integration site 10 protein-coding 75617 Mm.292027 NM_024266 ENSMUSG00000009927 Rps25 2810009D21Rik - 9|9 A5.2 ribosomal protein S25 protein-coding 14287 Mm.3830 NM_010236 ENSMUSG00000009566 Fpgs AA408187 - 2 B|2 22.09 cM folylpolyglutamyl synthetase protein-coding 73160 Mm.416910 3110018I06Rik - - 12|12 F1 RIKEN cDNA 3110018I06 gene unknown 102636041 XR_373424 ENSMUSG00000087022 Gm38484 - - 1 C1.3|1 predicted gene, 38484 ncRNA 102635831 XR_382688 Gm33073 - - 13 C3|13 predicted gene, 33073 ncRNA 71919 Mm.12255 NM_028003 ENSMUSG00000022466 Rpap3 2310042P20Rik|D15Ertd682e - 15 F1|15 53.54 cM RNA polymerase II associated protein 3 protein-coding 75388 Mm.483408 NM_029267 ENSMUSG00000025977 Boll 4930554P13Rik|4930597B14Rik - 1|1 C1.2 boule homolog, RNA binding protein protein-coding 225348 Mm.38816 NM_144863 ENSMUSG00000038299 Wdr36 5730444A13Rik|Ta-wdrp - 18|18 B1 WD repeat domain 36 protein-coding 677786 Gm12229 - - 11|11 B1.3 predicted gene 12229 pseudo 111765 Iapls3-1 - - - intracisternal A particle, lymphocyte specific 3-1 other 21351 Mm.29182 NM_011528 ENSMUSG00000025503 Taldo1 - - 7|7 F5 transaldolase 1 protein-coding 407786 Mm.19440 NM_001001176 ENSMUSG00000047242 Taf9b BC066223|Taf9l - X|X D TATA-box binding protein associated factor 9B protein-coding 102637527 Gm34313 - - 14|14 predicted gene, 34313 ncRNA 105243987 XR_865664 Gm39685 - - 1 G3|1 predicted gene, 39685 ncRNA 107988027 Gm37417 - - 1 H3|1 olfactory receptor pseudogene pseudo 74884 Mm.363520 NR_126547 ENSMUSG00000087604 Cdrt4os1 4930452L02Rik - 11|11 B3 CMT1A duplicated region transcript 4, opposite strand 1 ncRNA 105243237 XR_879014 Gm39211 - - 8 C2|8 predicted gene, 39211 ncRNA 102632554 XM_006516447 Gm30599 - - 12 F1|12 predicted gene, 30599 protein-coding 71556 8430434A19Rik - - 19|19 RIKEN cDNA 8430434A19 gene protein-coding 117214 mrct - - - modifier of Rinshoken cataract protein-coding 100418205 Gm19073 - - 10|10 A4 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 pseudogene pseudo 624254 Gm6486 EG624254 - 5|5 A1 predicted gene 6486 pseudo 100124453 NR_030578 ENSMUSG00000077980 Mir654 Mirn654|mmu-mir-654 - 12 F1|12 microRNA 654 ncRNA 98660 Mm.207432 NM_178405 ENSMUSG00000007097 Atp1a2 AW060654|Atpa-3|mKIAA0778 - 1 H3|1 79.6 cM ATPase, Na+/K+ transporting, alpha 2 polypeptide protein-coding 63913 Mm.157700 NM_022018 ENSMUSG00000026483 Fam129a AI256368|AU019833|Niban - 1|1 G1 family with sequence similarity 129, member A protein-coding 68002 Mm.250424 NM_026503 ENSMUSG00000026154 Sdhaf4 1110058L19Rik|1700001E18Rik|C6orf57 - 1|1 A5 succinate dehydrogenase complex assembly factor 4 protein-coding 73656 Mm.440719 NM_028595 ENSMUSG00000079419 Ms4a6c 2200009H22Rik|2210417N07Rik - 19|19 A membrane-spanning 4-domains, subfamily A, member 6C protein-coding 105247286 Gm28773 - - Y|Y predicted gene 28773 protein-coding 100534274 LOC100534274 - - 1|1 E4 nucleoporin 54 pseudogene pseudo 100416479 Gm18129 - - 7|7 B5 sorbitol dehydrogenase pseudogene pseudo 100418005 Gm15495 Cct4-1p - 7|7 A3 chaperonin containing Tcp1, subunit 4 (delta) pseudogene pseudo 102634737 XR_389021 Gm32249 - - 11 D|11 predicted gene, 32249 ncRNA 52053 D1Ertd86e - - 1 H4|1 DNA segment, Chr 1, ERATO Doi 86, expressed unknown 61618 D8Mit281 - - 8 16.6 cM DNA segment, Chr 8, Massachusetts Institute of Technology 281 unknown 102633820 XR_389614 Gm31552 - - 3 A3|3 predicted gene, 31552 ncRNA 105243030 XR_869869 Gm39071 - - 7 F1|7 predicted gene, 39071 ncRNA 105243922 XR_865415 Gm39639 - - 1 C1.1|1 predicted gene, 39639 ncRNA 56792 Mm.131237 NM_019992 ENSMUSG00000029254 Stap1 AI586015|Brdg1|STAP-1 - 5|5 E1 signal transducing adaptor family member 1 protein-coding 105243570 XR_871369 Gm39457 - - 9 F4|9 predicted gene, 39457 ncRNA 102634215 XR_877636 Gm31854 - - 18 E4|18 predicted gene, 31854 ncRNA 100417861 Gm14116 - - 2|2 G2 predicted gene 14116 pseudo 73569 Mm.25670 NM_028572 ENSMUSG00000091243 Vgll3 1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2 - 16|16 C1.3 vestigial like family member 3 protein-coding 56055 Mm.22147 NM_019581 ENSMUSG00000023952 Gtpbp2 nmf205 - 17|17 C GTP binding protein 2 protein-coding 433227 Mm.207427 LOC433227 - - 19|19 A uncharacterized LOC433227 unknown 19384 Mm.297440 NM_009391 ENSMUSG00000029430 Ran - - 5|5 G1.3 RAN, member RAS oncogene family protein-coding 108168111 LOC108168111 - - 13 D1 high mobility group protein B1 pseudogene pseudo 320591 9630026C02Rik - - 18|18 RIKEN cDNA 9630026C02 gene protein-coding 105244833 XM_017321860 Gm40369 - - 6 B2.3|6 predicted gene, 40369 protein-coding 360078 D17Jcs14 - - - DNA segment, Chr 17, John C. Schimenti 14 unknown 100043156 Gm4270 - - 7|7 A1 predicted gene 4270 pseudo 100035667 Sxbq2 Sxb-2 - 6 8.16 cM SGC/Knj cross B6 QTL 2 unknown 258119 Olfr1470-ps1 MOR202-30P - 19|19 A olfactory receptor 1470, pseudogene 1 pseudo 21051 T(10;18)12Rl T12Rl - - reciprocal translocation, Chr 10 and 18, Russell 12 other 100038811 Ignpq3 - - - IgA nephropathy QTL 3 unknown 105242885 Gm38971 - - 7|7 predicted gene, 38971 ncRNA 102633383 XR_382572 ENSMUSG00000113244 Gm31218 - - 13 B3|13 predicted gene, 31218 ncRNA 667948 XR_376757 Gm8890 - - 5 A1|5 predicted gene 8890 pseudo 100043305 Mm.412052 NR_033637 Gm4349 - - 3 F2.1|3 SET domain, bifurcated 1 pseudogene pseudo 11593 Mm.334535 NM_001005847 ENSMUSG00000031521 Aga AW060726 - 8|8 B1.3 aspartylglucosaminidase protein-coding 61072 D2Mit357 - - 2 8.78 cM DNA segment, Chr 2, Massachusetts Institute of Technology 357 unknown 102633067 XR_385755 Gm30983 - - 17 E2|17 predicted gene, 30983 ncRNA 100416085 Gm11905 - - 4|4 A3 peroxiredoxin 3 pseudogene pseudo 237730 Mm.189222 NM_001004147 ENSMUSG00000051062 Fbll1 AI595406 - 11|11 A4 fibrillarin-like 1 protein-coding 435949 Mm.485000 NM_001166713 ENSMUSG00000095806 Gm5728 EG435949|Vmn1r99 - 7|7 A3 predicted gene 5728 protein-coding 105245468 XR_873257 Gm40917 - - 13 A3.3|13 predicted gene, 40917 ncRNA 252912 Mm.377269 NM_145850 ENSMUSG00000069299 Vmn1r188 V1rh17 - 13|13 A3.1 vomeronasal 1 receptor 188 protein-coding 628388 Rpl3-ps2 EG628388|Gm6873 - X|X A7.3 ribosomal protein L3, pseudogene 2 pseudo 102633459 XR_387939 Gm31277 - - 8 C5|8 predicted gene, 31277 ncRNA 102634858 XR_877837 Gm32342 - - 19 C2|19 predicted gene, 32342 ncRNA 623121 Mm.138449 NM_001033384 ENSMUSG00000073491 Ifi213 E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A - 1|1 H3 interferon activated gene 213 protein-coding 105247124 XR_881229 Gm42281 - - 4 B1|4 predicted gene, 42281 ncRNA 110024 H58 - - - histocompatibility 58 (ID7) protein-coding 68053 Mm.404043 NM_026534 ENSMUSG00000028243 Ubxn2b 3110003A22Rik|6430407D20Rik|AI451665|p37 - 4|4 A1 UBX domain protein 2B protein-coding 100417883 Gm18878 - - 13|13 A1 lysophosphatidylcholine acyltransferase 4 pseudogene pseudo 105245647 XR_001780853 Gm41075 - - 13 D2.2|13 predicted gene, 41075 ncRNA 246088 Mtes1 - - - Metastasis efficiency suppressor gene 1 unknown 74668 Mm.375018 NR_146399 ENSMUSG00000113218 4933409F18Rik 4930435E18Rik - 12|12 A2 RIKEN cDNA 4933409F18 gene ncRNA 19858 NR_004415 ENSMUSG00000105025 Rnu3b1 Rnu3b-1 - 11 C|11 52.1 cM U3B small nuclear RNA 1 snRNA 73437 Mm.398310 XR_879187 1700064F23Rik - - 8|8 D3 RIKEN cDNA 1700064F23 gene ncRNA 76589 Mm.311629 NM_152823 ENSMUSG00000043592 Unc5cl 2510009H09Rik|BB155270|Zud - 17|17 C unc-5 family C-terminal like protein-coding 109755 Es5r Esr - - esterase 5 regulator protein-coding 77560 Mm.403130 XR_880538 9330198I05Rik Gm43082 - 5|5 F RIKEN cDNA 9330198I05 gene ncRNA 20198 Mm.3925 NM_011311 ENSMUSG00000001020 S100a4 18A2|42a|Capl|FSp1|Mts1|PeL98|metastasin|pk9a - 3 F1|3 39.27 cM S100 calcium binding protein A4 protein-coding 100125321 Vmn2r-ps73 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 73 pseudo 100041581 Mm.463942 NM_001099323 ENSMUSG00000038630 Zkscan16 XM_143800|Zfp483 - 4|4 B3 zinc finger with KRAB and SCAN domains 16 protein-coding 71295 Mm.399130 4933431K14Rik - - 9|9 E3.1 RIKEN cDNA 4933431K14 gene protein-coding 100502586 Gm19265 - - 6|6 37.55 cM predicted gene, 19265 ncRNA 52132 Mm.278798 NM_028771 ENSMUSG00000002608 Ccdc97 1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e - 7 A3|7 13.99 cM coiled-coil domain containing 97 protein-coding 56522 Mm.441372 NM_019943 ENSMUSG00000074817 Papolb PAP|Paplob|Papola-ps|Papt|Plap-ps|Tpap - 5|5 G2 poly (A) polymerase beta (testis specific) protein-coding 100416947 Gm18330 - - 3|3 G3 transmembrane protein 126A pseudogene pseudo 16625 Mm.422814 NM_008458 ENSMUSG00000066361 Serpina3c 1A1|Kalbp|Klkbp|spi2 - 12|12 E serine (or cysteine) peptidase inhibitor, clade A, member 3C protein-coding 113854 Mm.377151 NM_053227 ENSMUSG00000068234 Vmn1r44 V1RA10|V1rb11|V1rb4 - 6|6 D1 vomeronasal 1 receptor 44 protein-coding 13032 Mm.89295 NM_009982 ENSMUSG00000030560 Ctsc AI047818|CatC|DPP1|DPPI - 7|7 D3 cathepsin C protein-coding 69528 Mm.272846 NM_027103 ENSMUSG00000031847 1700030J22Rik - - 8|8 E1 RIKEN cDNA 1700030J22 gene protein-coding 780822 Ighv6-2 - - 12|12 F1 immunoglobulin heavy variable V6-2 pseudo 235312 Mm.227110 NM_145613 ENSMUSG00000079592 C1qtnf5 Ctrp5 - 9 A5.1|9 24.62 cM C1q and tumor necrosis factor related protein 5 protein-coding 545226 Rpl21-ps7 EG545226|Gm5816 - 17|17 E4 ribosomal protein L21, pseudogene 7 pseudo 110561 H2-T5 H-2T5 - - histocompatibility 2, T region locus 5 protein-coding 258155 Mm.377363 NM_001011853 ENSMUSG00000067526 Olfr1425 MOR239-7 - 19|19 A olfactory receptor 1425 protein-coding 100861988 Gm21380 - - Y|Y predicted gene, 21380 protein-coding 102639523 XR_381603 Gm35818 - - 12 C1|12 predicted gene, 35818 ncRNA 19499 Rb(16.17)7Bnr Rb7Bnr - - Robertsonian translocation, Chr 16 and 17, Universitat Bonn/Rhein 7 other 100036070 Hipp5 DGVi11a - 11 10.44 cM hippocampal weight 5 unknown 74647 Mm.370609 NR_152796 ENSMUSG00000112846 4930432O09Rik - - 10|10 D2 RIKEN cDNA 4930432O09 gene ncRNA 102635355 Gm32716 - - 10|10 predicted gene, 32716 ncRNA 107787 Msz - - - resistance to diabetes induction by MSz unknown 110237 Igh-Sa4 - - - immunoglobulin heavy chain Sa4 other 108168409 XR_001782660 Gm46648 - - 19 C1|19 predicted gene, 46648 ncRNA 110120474 LOC110120474 - - - VISTA enhancer mm1480 biological-region 105244601 XR_879979 Gm40191 - - 11 B3|11 predicted gene, 40191 ncRNA 102465601 NR_105960 ENSMUSG00000104979 Mir6994 mmu-mir-6994 - 19|19 A microRNA 6994 ncRNA 108167795 XR_001779718 Gm46212 - - 10 A2|10 predicted gene, 46212 ncRNA 102637254 XR_376028 Gm34119 - - 3 G1|3 predicted gene, 34119 ncRNA 52943 E.seq - - - DNA segment, E unknown 71088 Mm.425950 NM_027668 ENSMUSG00000071749 4933412E24Rik - - 15|15 D1 RIKEN cDNA 4933412E24 gene protein-coding 61044 DXMit136 - - X 4.23 cM DNA segment, Chr X, Massachusetts Institute of Technology 136 unknown 102633002 XR_379340 Gm30934 - - 9 A5.2|9 predicted gene, 30934 ncRNA 380907 Mm.81009 NM_001004158 ENSMUSG00000053868 Gm5142 EG380907 - 14|14 C3 predicted gene 5142 protein-coding 100036427 Vmbic6 - - 11 46.18 cM ventral midbrain iron content 6 unknown 100035603 Egq11 - - - early growth QTL 11 unknown 102633960 XR_382471 Gm31657 - - 13 B1|13 predicted gene, 31657 ncRNA 110120468 LOC110120468 - - - VISTA enhancer mm1522 biological-region 60796 D3Mit74 - - 3 38.78 cM DNA segment, Chr 3, Massachusetts Institute of Technology 74 unknown 105246882 Gm42087 - - 11|11 predicted gene, 42087 ncRNA 105243884 XR_872300 Gm39609 - - 11 A3.2|11 predicted gene, 39609 ncRNA 108167934 XR_001780350 Gm46298 - - 11 E1|11 predicted gene, 46298 ncRNA 102637308 Gm34153 - - 3|3 predicted gene, 34153 ncRNA 619914 Gm6113 EG619914 - X|X A2 predicted gene 6113 pseudo 100036061 Abbp3 - - - A/J and C57BL/6 blood pressure 3 unknown 71133 Mm.158577 NR_040715 ENSMUSG00000111746 4933422A05Rik - - 9|9 A4 RIKEN cDNA 4933422A05 gene ncRNA 24087 Mm.89983 NM_011904 ENSMUSG00000025013 Tll2 - - 19|19 C3 tolloid-like 2 protein-coding 108168514 Gm46706 - - Y C1|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 102637350 XR_381120 Gm34185 - - 11 A3.3|11 predicted gene, 34185 ncRNA 53040 CA7.14 - - - DNA segment, CA7.14 unknown 668579 Cd9-ps - - 7 B3|7 Cd9 antigen, pseudogene pseudo 14588 Mm.198399 NM_020014 ENSMUSG00000027316 Gfra4 AW060733|G630015H18Rik - 2 F1|2 63.26 cM glial cell line derived neurotrophic factor family receptor alpha 4 protein-coding 74450 Mm.101264 NM_153501 ENSMUSG00000037514 Pank2 4933409I19Rik|AI642621 - 2|2 F1 pantothenate kinase 2 protein-coding 109879 Akp4 Akp-4 - - alkaline phosphatase 4 protein-coding 102632402 Gm38445 - - 3|3 predicted gene, 38445 protein-coding 16751 l4Rn2 l(4)2Rn - - lethal, Chr 4, Rinchik 2 unknown 102633703 Gm31464 - - 8|8 predicted gene, 31464 protein-coding 111365144 LOC111365144 - - - Nos2 promoter region biological-region 21341 Mm.41977 NM_021441 ENSMUSG00000031832 Taf1c Tafi95|mTAFI95 - 8|8 E1 TATA-box binding protein associated factor, RNA polymerase I, C protein-coding 258378 Mm.377466 NM_146380 ENSMUSG00000073955 Olfr593 MOR24-2 - 7|7 E3 olfactory receptor 593 protein-coding 13643 Mm.249637 NM_007911 ENSMUSG00000003934 Efnb3 EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2 - 11 B3|11 42.8 cM ephrin B3 protein-coding 11502 Mm.28908 NM_007404 ENSMUSG00000031555 Adam9 AU020942|MDC9|Mltng|mKIAA0021 - 8 A2|8 13.7 cM a disintegrin and metallopeptidase domain 9 (meltrin gamma) protein-coding 108168401 Gm46641 - - 18 A1|18 predicted gene, 46641 pseudo 100126229 Mm.387835 XR_881946 Gm12758 - - 7|7 B1 predicted gene 12758 unknown 108168295 XR_001781959 Gm46556 - - 16 C4|16 predicted gene, 46556 ncRNA 110937 Apbb1-rs1 - - - amyloid beta (A4) precursor protein-binding, family B, member 1, related sequence 1 protein-coding 109962 Life1 - - - lifespan variability, 1 unknown 100504285 Mm.291105 NM_001195033 ENSMUSG00000090121 Abhd12b Gm804 - 12|12 C2 abhydrolase domain containing 12B protein-coding 100416909 Gm18312 - - 13|13 A5 kinesin family member 11 pseudogene pseudo 52049 D1Ggc4e - - - DNA segment, Chr 1, G. Consalez 4, expressed unknown 102635060 XR_386825 Gm32492 - - 19 D2|19 predicted gene, 32492 ncRNA 231252 Mm.140015 NM_001081104 ENSMUSG00000029205 Chrna9 2410015I05Rik|Acra9|EG666827|Gm8311 - 5 C3.1|5 33.84 cM cholinergic receptor, nicotinic, alpha polypeptide 9 protein-coding 258792 Mm.377693 NM_146796 ENSMUSG00000045395 Olfr1499 MOR211-2 - 19|19 A olfactory receptor 1499 protein-coding 102633271 Mm.186880 XR_870124 Gm31135 Gm45158 - 8 A1.1|8 predicted gene, 31135 ncRNA 102637143 XR_384295 Gm34027 - - 15 E2|15 predicted gene, 34027 ncRNA 626897 Gm6717 EG626897 - 1|1 E2.1 HCLS1-associated protein X-1-like pseudo 723851 NR_029851 ENSMUSG00000070100 Mir362 Mirn362|mir-362|mmu-mir-362 - X|X A1.1 microRNA 362 ncRNA 26365 Mm.322502 NM_011926 ENSMUSG00000074272 Ceacam1 Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2 - 7 A3|7 13.84 cM carcinoembryonic antigen-related cell adhesion molecule 1 protein-coding 107553 Tel15q - - - telomeric sequence, Chr 15, q arm protein-coding 100417548 Gm18681 - - 14|14 B microtubule-associated protein 1S pseudogene pseudo 100503366 Gm19658 - - 13|13 9.77 cM predicted gene, 19658 ncRNA 77917 A030014E15Rik - - 1|1 C5 RIKEN cDNA A030014E15 gene protein-coding 246749 Esmr - - 18 30.12 cM experimental severe malaria resistance unknown 102640191 XR_386647 Gm36319 - - 19 C1|19 predicted gene, 36319 ncRNA 53091 232b10C - - - DNA segment, 232b10C unknown 22097 Mm.472939 NR_002844 ENSMUSG00000085715 Tsix - - X D|X 46.13 cM X (inactive)-specific transcript, opposite strand ncRNA 102640069 XR_384841 Gm36225 - - 16 B3|16 predicted gene, 36225 ncRNA 790912 Mm.447313 NR_003283 ENSMUSG00000087434 Rab11fip4os1 Gm11202 - 11 B5|11 RAB11 family interacting protein 4 (class II), opposite strand 1 ncRNA 210711 Mm.58882 NM_145955 ENSMUSG00000048170 Mcmbp 1110007A13Rik|AU017382|BC025641|MCM-BP - 7|7 F3 minichromosome maintenance complex binding protein protein-coding 111336 Hoxa Hox-1 - 6 B3-C|6 homeobox A cluster other 77751 9230118N17Rik - - 7|7 RIKEN cDNA 9230118N17 gene protein-coding 111855 Iapls2-22 - - - intracisternal A particle, lymphocyte specific 2-22 other 61353 D4Mit151 - - 4 32.36 cM DNA segment, Chr 4, Massachusetts Institute of Technology 151 unknown 547213 LOC547213 - - 17|17 ribosomal protein S6 kinase alpha 2 like protein-coding 140629 Mm.486003 NM_080562 ENSMUSG00000027300 Ubox5 1500010O06Rik|C330018L13Rik|Rnf37|UIP5|Ubce7ip5|Ube7ip5 - 2 F1|2 U box domain containing 5 protein-coding 105243135 XR_870174 Gm39138 - - 8 A1.3|8 predicted gene, 39138 ncRNA 329727 Mm.293641 NM_177857 ENSMUSG00000007379 Dennd2c A930010I20Rik - 3|3 F2.2 DENN/MADD domain containing 2C protein-coding 235712 Mm.425459 NM_153101 ENSMUSG00000096719 Mrgpra2b MrgA2|Mrgpra2 - 7|7 B3 MAS-related GPR, member A2B protein-coding 114694 Skull7 E6.1|QTL-S6.1 - 6 6.68 cM skull morphology 7 unknown 665415 Gm7629 EG665415 - 13|13 B3 predicted gene 7629 pseudo 108168727 XM_017319362 Gm46725 - - 2 A3|2 predicted gene, 46725 protein-coding 22284 Mm.242646 NM_009481 ENSMUSG00000031010 Usp9x 5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl - X A1.1|X 7.95 cM ubiquitin specific peptidase 9, X chromosome protein-coding 105242744 XR_869369 Gm38878 - - 6 E3|6 predicted gene, 38878 ncRNA 109965 Ggm1 Ggm-1 - - ganglioside expression 1 protein-coding 320661 Mm.26480 NM_177221 ENSMUSG00000029190 D5Ertd579e 9030221A05Rik|A930018H20Rik|Kiaa0232 - 5 B3|5 19.18 cM DNA segment, Chr 5, ERATO Doi 579, expressed protein-coding 14321 Fth-ps2 Fth-rs2 - 6|6 B1 ferritin heavy chain, pseudogene 2 pseudo 100034891 Vmbic8 - - - ventral midbrain iron content 8 unknown 667295 Mup-ps18 Gm12562 - 4|4 B3 major urinary protein, pseudogene 18 pseudo 62133 D13Mit61 - - 13 20.16 cM DNA segment, Chr 13, Massachusetts Institute of Technology 61 unknown 27055 Mm.20943 NM_012056 ENSMUSG00000029781 Fkbp9 1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS - 6 B3|6 27.74 cM FK506 binding protein 9 protein-coding 665966 Gm7867 EG665966 - 1|1 D predicted gene 7867 pseudo 102465904 NR_106198 ENSMUSG00000098310 Mir8118 Gm27954|mmu-mir-8118 - 4|4 A5 microRNA 8118 ncRNA 105243363 Gm39310 - - 9|9 predicted gene, 39310 ncRNA 16770 Mm.5074 NM_010679 ENSMUSG00000022991 Lalba AW208827|Lyzg - 15|15 F1 lactalbumin, alpha protein-coding 67379 Mm.280594 NM_026117 ENSMUSG00000054499 Dedd2 2410050E11Rik|FLAME-3 - 7|7 A3 death effector domain-containing DNA binding protein 2 protein-coding 243874 Mm.277114 NM_194058 ENSMUSG00000060508 Nlrp9b Nalp-delta|Nalp9b|Nlrp9 - 7|7 A3 NLR family, pyrin domain containing 9B protein-coding 100093640 Trnal-uag - - - transfer RNA leucine (anticodon UAG) tRNA 330264 Gm5110 EG330264 - 6|6 A1 actin, gamma, cytoplasmic 1 pseudogene pseudo 108168827 LOC108168827 - - 2 H4 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 268686 Mm.291249 NM_001081159 ENSMUSG00000021679 S100z Gm625 - 13|13 D1 S100 calcium binding protein, zeta protein-coding 112034 Bw18 - - 6 35.94 cM body weight QTL 18 unknown 18642 Mm.272582 NM_021514 ENSMUSG00000033065 Pfkm AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx - 15|15 F1 phosphofructokinase, muscle protein-coding 102636486 XR_374815 Gm33540 - - 2 E1|2 predicted gene, 33540 ncRNA 14687 Mm.32595 NM_010311 ENSMUSG00000040009 Gnaz AI847979|Gz - 10 C1|10 38.48 cM guanine nucleotide binding protein, alpha z subunit protein-coding 67615 Mm.389540 NM_026275 ENSMUSG00000036241 Ube2r2 1200003M11Rik|Cdc34b|Ubc3b - 4|4 A5 ubiquitin-conjugating enzyme E2R 2 protein-coding 258429 Mm.377497 NM_146437 ENSMUSG00000111179 Olfr996 MOR175-4 - 2|2 D olfactory receptor 996 protein-coding 102633349 XR_373210 Gm31195 - - 1 A3|1 predicted gene, 31195 ncRNA 102635558 XR_383673 Gm32860 - - 14 E1|14 predicted gene, 32860 ncRNA 242747 Mm.332053 NM_198619 ENSMUSG00000059423 Zfp933 2810408P10Rik - 4|4 E1 zinc finger protein 933 protein-coding 359859 DXMgc44 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 44 unknown 100040636 Gm20848 - - Y|Y predicted gene, 20848 protein-coding 108167412 XM_017312414 Gm45975 - - 7 A3|7 predicted gene, 45975 protein-coding 69304 Mm.491242 1700001A13Rik - - - RIKEN cDNA 1700001A13 gene protein-coding 106869 Mm.27740 NM_134131 ENSMUSG00000062210 Tnfaip8 AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe - 18|18 D1 tumor necrosis factor, alpha-induced protein 8 protein-coding 116889 Eae17 - - 10 35.26 cM experimental allergic encephalomyelitis susceptibility 17 unknown 27594 EST974366 - - - DNA segment, EST 974366 unknown 77449 9530007D14Rik - - - RIKEN cDNA 9530007D14 gene protein-coding 108386 Xmmv1 Xmmv-1 - - xenotropic-MCF leukemia virus 1 other 665813 Rpl19-ps7 EG665813|Gm7801 - 18 A2|18 ribosomal protein L19, pseudogene 7 pseudo 105245745 XR_874580 Gm41144 - - 14 C1|14 predicted gene, 41144 ncRNA 102634088 XR_379221 Gm31755 - - 9 A4|9 predicted gene, 31755 ncRNA 117592 Mm.440185 NM_080445 ENSMUSG00000050796 B3galt6 BB129894|GalTII - 4|4 E2 UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6 protein-coding 105244764 XR_868474 Gm40316 - - 5 C3.2|5 predicted gene, 40316 ncRNA 70771 Mm.158445 NM_027543 ENSMUSG00000056679 Gpr173 3230401K02Rik|Sreb3 - X|X F3 G-protein coupled receptor 173 protein-coding 105247068 Gm42241 - - 5|5 predicted gene, 42241 ncRNA 270624 Mm.115205 NM_178753 ENSMUSG00000071722 Spin4 9630042H07Rik - X|X C3 spindlin family, member 4 protein-coding 102632007 XR_877324 Gm30188 - - 18 B3|18 predicted gene, 30188 ncRNA 105244983 Gm40500 - - 8|8 predicted gene, 40500 protein-coding 207921 Mm.184898 NM_175431 ENSMUSG00000050545 Fam228b A830093I24Rik - 12|12 A1.1 family with sequence similarity 228, member B protein-coding 52223 Mm.24985 D6Ertd160e - - 6 B1|6 DNA segment, Chr 6, ERATO Doi 160, expressed unknown 100504605 Mm.483695 Gm20310 - - 8|8 38.5 cM predicted gene, 20310 unknown 111300 Hmgn1-rs8 Hmg14-rs8 - - high mobility group nucleosomal binding domain 1, related sequence 8 pseudo 319480 Mm.34883 NM_176922 ENSMUSG00000032243 Itga11 4732459H24Rik - 9|9 B integrin alpha 11 protein-coding 665747 Gm15550 EG665747 - 6 B2.1|6 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase pseudogene pseudo 626575 Mm.332020 Gm6687 EG626575|srsf - 4|4 E1 predicted gene 6687 protein-coding 72511 Mm.140700 NR_045172 ENSMUSG00000097040 2610316D01Rik - - 3|3 B RIKEN cDNA 2610316D01 gene ncRNA 105245386 XR_872531 Gm40850 - - 12 A1.2|12 predicted gene, 40850 ncRNA 108168365 XM_017318017 Gm46612 - - 18 D3|18 immunity-related GTPase pseudogene pseudo 100041672 LOC100041672 - - - PRAME family member 9/15-like pseudo 109453 Hpic3 - - - haloperidol induced catalepsy 3 unknown 102631671 Gm21819 - - Y|Y predicted gene, 21819 protein-coding 245607 Mm.489763 NM_001163015 ENSMUSG00000072966 Gprasp2 5330440H13Rik|GASP-2|GASP2|Prpl5 - X F1|X 57.3 cM G protein-coupled receptor associated sorting protein 2 protein-coding 102635593 XR_373236 Gm28836 - - 1 A4|1 predicted gene 28836 ncRNA 51959 D7Ertd1e - - 7 20.68 cM DNA segment, Chr 7, ERATO Doi 1, expressed unknown 108291 Eif4ebp1-ps1 - - - eukaryotic translation initiation factor 4E binding protein 1, pseudogene 1 pseudo 258999 Mm.223386 NM_146997 ENSMUSG00000044029 Olfr178 MOR184-6 - 16|16 C1.2 olfactory receptor 178 protein-coding 216453 Mm.222953 NM_147222 ENSMUSG00000054052 Rdh19 RDH-S|RDH-S2|Rdhs - 10 D3|10 76.27 cM retinol dehydrogenase 19 protein-coding 13851 epi - - - exocrine pancreatic insufficiency unknown 22213 Mm.458125 NM_019803 ENSMUSG00000009293 Ube2g2 1110003O05Rik|D10Xrf369|UBC7|Ubc7p - 10 C1|10 39.72 cM ubiquitin-conjugating enzyme E2G 2 protein-coding 110386 Tpm3-rs8 - - - tropomyosin 3, related sequence 8 protein-coding 102634083 XR_379096 Gm31751 - - 9 A1|9 predicted gene, 31751 ncRNA 108179 Rnu3b-ps5 - - - U3B small nuclear RNA pseudogene 5 pseudo 108168486 XR_001782845 LOC108168486 - - X A1.1 uncharacterized LOC108168486 ncRNA 102634354 XR_373400 Gm31955 - - 1 C1.1|1 predicted gene, 31955 ncRNA 211623 Mm.439926 NM_207229 ENSMUSG00000095304 Plac9a Plac9 - 14|14 A3 placenta specific 9a protein-coding 109280116 LOC109280116 Mm1346 - - VISTA enhancer mm1346 biological-region 108168492 XR_001782865 Gm46693 - - X A1.1|X predicted gene, 46693 ncRNA 227937 Mm.260938 NM_026361 ENSMUSG00000026991 Pkp4 5031422I09Rik|9430019K17Rik|Armrp|p0071 - 2|2 C1.1 plakophilin 4 protein-coding 105242856 XR_880136 Gm38950 - - 11 D|11 predicted gene, 38950 ncRNA 102633952 XR_381402 Gm31650 - - 12 A2|12 predicted gene, 31650 ncRNA 11689 Mm.41072 NM_009662 ENSMUSG00000025701 Alox5 5-LO|5-LOX|5LO|5LX|AI850497|F730011J02 - 6 E3|6 53.79 cM arachidonate 5-lipoxygenase protein-coding 22526 Mm.427330 NM_009529 ENSMUSG00000094624 Gm4836 - - X A3.1|X predicted gene 4836 protein-coding 60996 D2Mit176 - - 2 3.79 cM DNA segment, Chr 2, Massachusetts Institute of Technology 176 unknown 11470 Mm.30959 NM_009611 ENSMUSG00000070979 Actl7a Tact2 - 4 B3|4 31.66 cM actin-like 7a protein-coding 492927 Ssta3 - - 6 35.94 cM susceptibility to Salmonella typhimurium antigens 3 unknown 102467612 n-TWcca8 n-Tw8 - 11 B2|11 nuclear encoded tRNA trytophan 8 (anticodon CCA) tRNA 78425 Mm.326532 NR_002850 9530053H05Rik - - 19|19 A RIKEN cDNA 9530053H05 gene other 217026 Mm.117874 NM_145432 ENSMUSG00000000976 Heatr6 2700008B19Rik|BB135312|BB249351 - 11|11 C HEAT repeat containing 6 protein-coding 359871 DXMgc22 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 22 unknown 100416160 Wdr46-ps Gm17947 - 5|5 A1 Wdr46 retrotransposed pseudogene pseudo 75163 Mm.396159 4930542C16Rik 1700010J08Rik - 14|14 A3 RIKEN cDNA 4930542C16 gene ncRNA 114731 Skull23 QTL-S16.1 - 16 13.8 cM skull morphology 23 unknown 268755 Mm.194050 NR_040709 ENSMUSG00000097545 Mir124a-1hg A930011O12Rik|Rncr3|mir-124-1|mir-3078 - 14|14 D1 Mir124-1 host gene (non-protein coding) ncRNA 236366 Mm.352227 NM_001033157 ENSMUSG00000073197 5730507C01Rik - - 12|12 A1.2 RIKEN cDNA 5730507C01 gene protein-coding 100049713 NR_029645 ENSMUSG00000077886 Mir295 Mirn295|mir-295|mmu-miR-295 - 7 A1|7 microRNA 295 ncRNA 62052 DXMit236 - - X 75.85 cM DNA Segment, Chr X, Massachusetts Institute of Technology 236 unknown 404443 Olfr928-ps1 GA_x5J8B7W60AJ-716549-716307|MOR171-55_p - 9|9 A5.1 olfactory receptor 928, pseudogene 1 pseudo 100125407 Femwf7 - - - femur work to failure 7 unknown 100416987 Gm18348 - - 7|7 B4 MAS-related GPR, member X1 pseudogene pseudo 14234 Mm.14092 NM_013519 ENSMUSG00000046714 Foxc2 Fkh14|Hfhbf3|MFH-1|Mfh1 - 8 E1|8 70.33 cM forkhead box C2 protein-coding 53161 2c8b2-1092 - - - DNA segment, 2c8b2-1092 unknown 101056240 LOC101056240 - - 2 B small ubiquitin-related modifier 2 pseudogene pseudo 100504212 Gm13786 - - 2|2 50.85 cM 60S ribosomal protein L34-like pseudo 67196 Mm.284587 NM_026024 ENSMUSG00000026429 Ube2t 2700084L22Rik|C80607 - 1|1 E4 ubiquitin-conjugating enzyme E2T protein-coding 624388 Gm6500 EG624388 - X|X E1 predicted gene 6500 pseudo 100041732 Gm15222 - - 14|14 C1 predicted gene 15222 protein-coding 100271882 NM_001145863 ENSMUSG00000079009 Gm14139 - - 2|2 G3 predicted gene 14139 protein-coding 112363 Carp2 Q11Ucp1-p - - carcass protein in high growth mice 2 unknown 110120432 LOC110120432 - - - VISTA enhancer mm1298 biological-region 12660 Mm.225505 NM_013490 ENSMUSG00000024843 Chka CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha - 19 A|19 3.57 cM choline kinase alpha protein-coding 668018 Gm8927 EG668018 - 6|6 A3.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102636582 XR_382507 Gm26555 - - 13 B1|13 predicted gene, 26555 ncRNA 105243165 XR_870321 Gm39159 - - 8 A4|8 predicted gene, 39159 ncRNA 100038944 Gm20791 - - Y|Y predicted gene, 20791 protein-coding 105246707 XR_878526 4833413N01Rik - - 1|1 E4 RIKEN cDNA 4833413N01 gene protein-coding 71833 Mm.307455 NM_027946 ENSMUSG00000049354 Dcaf7 1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68 - 11|11 E1 DDB1 and CUL4 associated factor 7 protein-coding 100416145 Mm.439689 Tuba-rs1 alphaTT1 - 17|17 A3.3 tubulin alpha, related sequence 1 pseudo 72854 2900034C19Rik - - 4|4 RIKEN cDNA 2900034C19 gene protein-coding 77472 C030024C20Rik - - 16|16 RIKEN cDNA C030024C20 gene protein-coding 668103 Supt20-ps EG668103|Fam48b1 - X|X C3 suppressor of Ty 20, pseudogene pseudo 595136 Mm.42805 NM_001030274 ENSMUSG00000028648 Ndufs5 AI256693 - 4|4 D2.2 NADH dehydrogenase (ubiquinone) Fe-S protein 5 protein-coding 102639673 XR_377225 Gm35929 - - 5 G3|5 predicted gene, 35929 ncRNA 111057 Ass-ps2 - - - argininosuccinate synthetase pseudogene 2 pseudo 667912 Gm8877 EG667912 - 17|17 B1 predicted gene 8877 pseudo 108167863 XR_001780128 Gm46259 - - 11 B1.3|11 predicted gene, 46259 ncRNA 53621 Mm.214525 NM_016877 ENSMUSG00000038784 Cnot4 Not4|Not4h|Not4hp - 6|6 B1 CCR4-NOT transcription complex, subunit 4 protein-coding 620189 Gm14371 - - 2|2 H4 predicted gene 14371 pseudo 407814 Mm.271088 NM_001025435 ENSMUSG00000046974 BC053393 - - 11|11 B1.1 cDNA sequence BC053393 protein-coding 102636876 XR_383925 Gm33826 - - 15 B3.1|15 predicted gene, 33826 ncRNA 208043 Mm.250391 NM_177581 ENSMUSG00000038384 Setd1b AA516740|BC035291|KMT2G|mKIAA1076 - 5|5 F SET domain containing 1B protein-coding 105246532 XR_877718 Gm41806 - - 19 A|19 predicted gene, 41806 ncRNA 16303 In(8)14Rk-d In(8)14Rk|In14Rk - - inversion, Chr 8, Roderick 14, distal other 53718 D5H4S76 D4S76h - - DNA segment, Chr 5, human D4S76 unknown 668426 Gm9164 EG668426 - X D|X glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 665004 NR_136916 Gm7443 EG665004 - 6|6 C3 ribosomal protein L27 pseudogene pseudo 108167468 XR_001778320 Gm46006 - - 7 F5|7 predicted gene, 46006 ncRNA 102465703 NR_106079 ENSMUSG00000098247 Mir7220 Gm27329|mmu-mir-7220 - 18|18 E1 microRNA 7220 ncRNA 52250 Mm.146332 NM_178608 ENSMUSG00000052852 Reep1 D6Ertd253e - 6 C1|6 32.2 cM receptor accessory protein 1 protein-coding 385277 Igkv4-60 Gm10455|Gm1529|kl4 - 6|6 C1 immunoglobulin kappa variable 4-60 other 108375 Xmv1 Xmv-1 - - xenotropic murine leukemia virus 1 other 66676 Mm.296043 NM_025698 ENSMUSG00000033184 Tmed7 3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM - 18|18 C transmembrane p24 trafficking protein 7 protein-coding 105244826 XR_001785228 Gm40363 - - 6 B2.3|6 predicted gene, 40363 protein-coding 102631988 Gm29003 - - Y|Y predicted gene 29003 ncRNA 27855 D0Nds13 - - - DNA segment, Nuffield Department of Surgery 13 unknown 100039175 Mm.439926 XR_874468 ENSMUSG00000094800 Gm9780 - - 14 A3|14 predicted gene 9780 protein-coding 68775 Mm.178798 NM_133699 ENSMUSG00000020566 Atp6v1c2 1110038G14Rik - 12|12 A1.1 ATPase, H+ transporting, lysosomal V1 subunit C2 protein-coding 100035427 Fcs2 - - - fibroblast cell senescence 2 unknown 100126788 Ity2b - - - immunity to S. typhimurium 2b unknown 100417090 Gm18394 - - 8|8 B3.1 predicted gene, 18394 pseudo 99138 Mm.41271 NM_139308 ENSMUSG00000027367 Stard7 AI852671|AL022671|AW544915 - 2 F1|2 61.88 cM START domain containing 7 protein-coding 12332 Mm.18626 NM_007599 ENSMUSG00000056737 Capg gCap39|mbh1 - 6|6 C1 capping protein (actin filament), gelsolin-like protein-coding 66471 Mm.218657 NM_023210 ENSMUSG00000015749 Anp32e 2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L - 3|3 F2.1 acidic (leucine-rich) nuclear phosphoprotein 32 family, member E protein-coding 239559 Mm.323805 NM_001004150 ENSMUSG00000047878 A4galt - - 15|15 E1 alpha 1,4-galactosyltransferase protein-coding 627884 Vmn1r-ps144 EG627884|Gm6805 - 17|17 A3.2 vomeronasal 1 receptor, pseudogene 144 pseudo 108167447 XR_001778219 Gm44507 - - 7 E1|7 predicted gene 44507 ncRNA 67005 Mm.271986 NM_025901 ENSMUSG00000038628 Polr3k 12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11 - 2|2 H4 polymerase (RNA) III (DNA directed) polypeptide K protein-coding 544696 Mm.411188 NM_001033385 ENSMUSG00000038122 Tbc1d32 Bromi|C6orf170|D630037F22Rik|b2b2284Clo - 10|10 B3-B4 TBC1 domain family, member 32 protein-coding 258227 Mm.377385 NM_001011524 ENSMUSG00000060556 Olfr1418 MOR266-5 - 19|19 A olfactory receptor 1418 protein-coding 100416796 Gm18258 - - 7|7 F4 gamma-glutamyl hydrolase pseudogene pseudo 111438 Emv41 Emv-41 - - endogenous ecotropic MuLV 41 other 100270751 Gm15590 - - 17|17 A1 ferritin light chain 1 pseudogene pseudo 100503701 Gm19843 - - 12|12 62.59 cM predicted gene, 19843 protein-coding 207209 Mm.207121 NM_001079929 ENSMUSG00000059562 Ccdc154 Ccdc157|Gm317 - 17|17 A3.3 coiled-coil domain containing 154 protein-coding 61438 D6Mit106 - - 6 48.54 cM DNA segment, Chr 6, Massachusetts Institute of Technology 106 unknown 100415813 Gm17831 - - 7 F3|7 70.0 cM mitochondrial carrier triple repeat 1 pseudogene pseudo 545470 Gm5839 EG545470 - 18|18 C glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100040270 Rapgef4os1 Gm13634 - 2|2 C3 Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 1 protein-coding 780884 Ighv1-23 Gm9738 - 12|12 F2 immunoglobulin heavy variable V1-23 other 100504059 Gm20039 - - 18|18 59.41 cM 60S ribosomal protein L32-like pseudo 632903 Gm7096 EG632903 - 19|19 A predicted gene 7096 pseudo 105246038 XR_875655 Gm41399 - - 15 F1|15 predicted gene, 41399 ncRNA 260296 Mm.28010 NM_153110 ENSMUSG00000109718 Trim61 2czf61|AU018704|C85201|E330039K03Rik|Rnf35 - 8|8 B3.1 tripartite motif-containing 61 protein-coding 111996 Insq5 - - - insulin QTL 5 unknown 102633794 Mm.379965 XR_374887 LOC102633794 - - 2 E4 uncharacterized LOC102633794 ncRNA 18301 Mm.1870 NM_008761 ENSMUSG00000009687 Fxyd5 EF-8|Oit2|RIC - 7|7 B1 FXYD domain-containing ion transport regulator 5 protein-coding 102635683 XR_386216 Gm32958 - - 18 C|18 predicted gene, 32958 ncRNA 102636595 Gm33614 - - 9 A5.3|9 predicted gene, 33614 pseudo 109344 Mm.440012 NR_040331 ENSMUSG00000087406 E130215H24Rik - - 2|2 G3 RIKEN cDNA E130215H24 gene ncRNA 74980 Mm.401948 4930465K09Rik - - 15|15 RIKEN cDNA 4930465K09 gene protein-coding 67708 Mm.11233 NM_026327 ENSMUSG00000034501 Pcnx4 1810048J11Rik|4932413O10|AU017192|Pcnxl4 - 12|12 C3 pecanex homolog 4 protein-coding 53083 B2N(I) - - - DNA segment, B2N(I) unknown 100036754 Mlca4 - - - modifier of locomotor activity 4 unknown 102640073 Mm.404949 XR_390410 Gm11820 - - 4 A1|4 5.58 cM predicted gene 11820 ncRNA 258989 Mm.377778 NM_146987 ENSMUSG00000091983 Olfr457 MOR257-1 - 6|6 B2.1 olfactory receptor 457 protein-coding 108167509 Gm46025 - - 7 A3|7 predicted gene, 46025 pseudo 102639906 XR_383732 Gm36107 - - 14 E2.3|14 predicted gene, 36107 ncRNA 67902 Mm.103546 NM_026445 ENSMUSG00000025538 Sumf2 2610040F05Rik - 5|5 G1.3 sulfatase modifying factor 2 protein-coding 19584 Rb(6.10)13Tu Rb13Tu - - Robertsonian translocation, Chr 6 and 10, Tubingen 13 other 777674 Ighd5-3 Gm17663 - 12|12 F1 immunoglobulin heavy diversity 5-3 pseudo 19743 Mm.12961 NM_011269 ENSMUSG00000023926 Rhag CD241|Rh50|Rh50A - 17 B2|17 19.54 cM Rhesus blood group-associated A glycoprotein protein-coding 435881 Gm5721 EG435881 - 6 A2|6 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase pseudogene pseudo 100628624 NR_039553 ENSMUSG00000093100 Mir3971 mmu-mir-3971|mu-mir-3971 - 11 B5|11 45.92 cM microRNA 3971 ncRNA 22042 Mm.28683 NM_011638 ENSMUSG00000022797 Tfrc 2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90 - 16 B3|16 23.06 cM transferrin receptor protein-coding 100502877 Rps8-ps4 Gm10712 - 7 A1|7 7.85 cM ribosomal protein S8, pseudogene 4 pseudo 434225 Mm.488631 NM_001018010 Platr28 EG434225|Gm15514 - 7 E3|7 pluripotency associated transcript 28 unknown 100312514 Vmn1r-ps69 - - 7 A1|7 7.81 cM vomeronasal 1 receptor, pseudogene 69 pseudo 23890 Mm.487326 NM_011823 ENSMUSG00000040229 Gpr34 Lypsr1 - X|X A1.1 G protein-coupled receptor 34 protein-coding 105244630 Mm.412757 XR_872445 Gm26520 - - 12 A1.1|12 predicted gene, 26520 ncRNA 102635712 XR_001782644 Gm32980 - - 19 D2|19 predicted gene, 32980 ncRNA 102639819 XR_380894 Gm36041 - - 10 D2|10 predicted gene, 36041 ncRNA 102637463 Gm34266 - - 17 B2|17 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 pseudogene pseudo 100036057 Tbbmd1 - - 1 94.35 cM total body bone mineral density 1 unknown 13370 Mm.148342 NM_007860 ENSMUSG00000034785 Dio1 5DI|D1|ITDI1|TXDI1 - 4 C7|4 50.18 cM deiodinase, iodothyronine, type I protein-coding 114473 Sle10 Bxs4 - 1 6.27 cM systematic lupus erythematosus susceptibility 10 unknown 102465759 NR_106109 ENSMUSG00000098516 Mir7651 Gm27664|mmu-mir-7651 - 11|11 A1 microRNA 7651 ncRNA 103363 AU022778 - - - expressed sequence AU022778 unknown 69719 Mm.305535 NM_023525 ENSMUSG00000013629 Cad 2410008J01Rik|AU018859|Cpad - 5|5 B1 carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase protein-coding 66106 Mm.140340 NM_025357 ENSMUSG00000041476 Smpx 1010001C09Rik|Csl - X|X F4 small muscle protein, X-linked protein-coding 270627 Mm.261750 NM_001081008 ENSMUSG00000031314 Taf1 AU015687|B430306D02Rik|Ccg-1|Ccg1|KAT4|N-TAF1|TAFII250|Taf2a|p250 - X D|X 44.29 cM TATA-box binding protein associated factor 1 protein-coding 100503902 Gm19951 - - 12|12 50.16 cM predicted gene, 19951 ncRNA 258953 Mm.377768 NM_146951 ENSMUSG00000094266 Olfr340 MOR136-1 - 2|2 B olfactory receptor 340 protein-coding 21372 Mm.258476 NM_020601 ENSMUSG00000025246 Tbl1x 5330429M20|Tbl1 - X B|X 38.31 cM transducin (beta)-like 1 X-linked protein-coding 53899 Naip3-ps2 Birc1c-ps2 - 13 53.09 cM NLR family, apoptosis inhibitory protein 3, pseudogene 2 pseudo 100526559 NR_037290 ENSMUSG00000093215 Mir3103 mir-3103|mmu-mir-3103 - 7 F3|7 70.09 cM microRNA 3103 ncRNA 214158 Mm.314151 NM_001029935 ENSMUSG00000064140 Trim38 Gm23 - 13|13 A3.1 tripartite motif-containing 38 protein-coding 105245443 XR_873031 Gm40897 - - 12 F1|12 predicted gene, 40897 ncRNA 209966 Mm.234233 NM_171824 ENSMUSG00000050751 Pgbd5 2900019M05Rik|AI854313 - 8|8 E2 piggyBac transposable element derived 5 protein-coding 100416320 Gm18037 - - 5|5 A1 ribosomal protein L19 pseudogene pseudo 60969 D10Mit8 - - 10 42.5 cM DNA segment, Chr 10, Massachusetts Institute of Technology 8 unknown 105246596 XR_877926 Gm41866 - - 19 D2|19 predicted gene, 41866 ncRNA 218210 Mm.255398 NM_175749 ENSMUSG00000021374 Nup153 B130015D15Rik|C88147 - 13|13 A5 nucleoporin 153 protein-coding 27686 D11Moh13 - - - DNA segment, Chr 11, KL Mohlke 13 unknown 100043242 Gm4308 - - 10 D1|10 THO complex 4 pseudogene pseudo 62887 D11Mit223 - - 11 70.07 cM DNA segment, Chr 11, Massachusetts Institute of Technology 223 unknown 208177 Mm.211477 NM_153412 ENSMUSG00000033149 Phldb2 AV253284|C820004H04Rik|LL5b|LL5beta - 16|16 B5 pleckstrin homology like domain, family B, member 2 protein-coding 102634417 XR_377031 Gm32002 - - 5 C3.3|5 predicted gene, 32002 ncRNA 73963 Mm.487933 4930434F21Rik - - 9|9 RIKEN cDNA 4930434F21 gene protein-coding 73164 3110037B15Rik - - 9|9 RIKEN cDNA 3110037B15 gene protein-coding 102633037 XR_001782284 Gm30958 - - 17 C|17 predicted gene, 30958 ncRNA 67630 Mm.102765 NM_026283 ENSMUSG00000021770 Samd8 1110053F04Rik|1700010P07Rik|SMSr - 14|14 A3 sterile alpha motif domain containing 8 protein-coding 52532 D12Ertd123e - - 12 35.64 cM DNA segment, Chr 12, ERATO Doi 123, expressed unknown 20605 Mm.278336 NM_009216 ENSMUSG00000035431 Sstr1 SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1 - 12 C1|12 25.61 cM somatostatin receptor 1 protein-coding 100503588 Gm19785 - - 10|10 29.64 cM predicted gene, 19785 ncRNA 68814 1110060G06Rik - - 5|5 RIKEN cDNA 1110060G06 gene protein-coding 100039334 Gm2165 - - X A3.1|X predicted gene 2165 ncRNA 67673 Mm.153758 NM_026305 ENSMUSG00000055839 Elob 0610040H15Rik|Tceb2 - 17|17 A3.3 elongin B protein-coding 97259 C85922 - - - expressed sequence C85922 unknown 109771 Tcp8 Tcp-8 - - t-complex protein 8 protein-coding 380674 Mm.384871 NM_199313 Rdh18-ps Rdh18 - 10|10 D3 retinol dehydrogenase 18, pseudogene pseudo 226139 Mm.248237 NM_144874 ENSMUSG00000040018 Cox15 2900026G05Rik - 19|19 C3 cytochrome c oxidase assembly protein 15 protein-coding 435647 Gm5703 EG435647 - 1|1 G1 MYB binding protein (P160) 1a pseudogene pseudo 93716 Mm.247203 NM_033591 ENSMUSG00000103897 Pcdhga8 mKIAA4054 - 18|18 B3 protocadherin gamma subfamily A, 8 protein-coding 102634879 Gm15715 - - 5 A3|5 9.97 cM predicted gene 15715 pseudo 14615 Mm.390369 NM_008122 ENSMUSG00000034520 Gjc1 C130009G16Rik|Cnx45|Cx45|Gja-7|Gja7 - 11|11 E1 gap junction protein, gamma 1 protein-coding 100042448 Gm12623 - - 11|11 B2 poly A binding protein, cytoplasmic 4 pseudogene pseudo 630077 LOC630077 - - - serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform-like pseudo 83984 Mm.432504 NM_032004 ENSMUSG00000047654 Tssk6 Sstk|TSK-6|TSSK-6 - 8|8 B3.3 testis-specific serine kinase 6 protein-coding 492957 Cocia8 - - 6 12.36 cM cocaine induced activation 8 unknown 106986 Mm.442323 AU020951 - - - expressed sequence AU020951 protein-coding 68344 Mm.28766 NM_026685 ENSMUSG00000046082 Tmem174 0610009B10Rik|AA986094 - 13|13 D1 transmembrane protein 174 protein-coding 97990 C86938 - - - expressed sequence C86938 unknown 77252 Mm.29184 NM_029886 ENSMUSG00000040139 9430038I01Rik - - 7|7 F4 RIKEN cDNA 9430038I01 gene protein-coding 53735 D17Tu10 DXTu10 - - DNA segment, Chr 17, Tubingen 10 unknown 625285 H2-Q3 EG625285|Gm6571|H-2Q3|Qa-3|Qa3 - 17 B1|17 18.64 cM histocompatibility 2, Q region locus 3 pseudo 102639145 Mm.400712 LOC102639145 - - - protein PRRC2A-like protein-coding 71533 9030407C09Rik - - 2|2 RIKEN cDNA 9030407C09 gene protein-coding 97387 Mm.21612 NM_133789 ENSMUSG00000030374 Strn4 C80611|ZIN|zinedin - 7|7 A2 striatin, calmodulin binding protein 4 protein-coding 111324 Hmgn2-rs16 Hmg17-rs16 - - high mobility group nucleosomal binding domain 2, related sequence 16 pseudo 16204 Mm.142716 NM_008375 ENSMUSG00000020405 Fabp6 GT|I-15P|I-BABP|ILBP|ILBP3|Illbp - 11 B1.1|11 25.81 cM fatty acid binding protein 6, ileal (gastrotropin) protein-coding 105247212 XR_881579 Gm42350 - - 4 E2|4 predicted gene, 42350 ncRNA 70355 Mm.242413 NM_147217 ENSMUSG00000051043 Gprc5c 1110028I06Rik|3200002M13Rik|Raig3 - 11|11 E2 G protein-coupled receptor, family C, group 5, member C protein-coding 100035453 Psrs4 - - - psoriasis susceptibility 4 unknown 100124297 Traj55 Gm17471 - 14|14 C2 T cell receptor alpha joining 55 pseudo 16519 Mm.5127 NM_008426 ENSMUSG00000026824 Kcnj3 GIRK-1|GIRK1|Kcnf3|Kir3.1 - 2|2 C1.1 potassium inwardly-rectifying channel, subfamily J, member 3 protein-coding 100035728 Otx2m1 Otmf18 - 18 11.96 cM orthodenticle homolog 2 modifier 1 unknown 114602 Mm.28331 NM_053253 ENSMUSG00000010044 Zmynd10 Blu - 9|9 F1 zinc finger, MYND domain containing 10 protein-coding 54351 Mm.13430 NM_018740 ENSMUSG00000018565 Elp5 Derp6|Rai12 - 11|11 B3 elongator acetyltransferase complex subunit 5 protein-coding 100036481 Axtrb9 Axtofd5 - - anxiety-related behavior 9 unknown 102632745 XM_011251048 ENSMUSG00000104191 Gm30737 - - Y A1|Y predicted gene, 30737 protein-coding 15368 Mm.276389 NM_010442 ENSMUSG00000005413 Hmox1 D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32 - 8 35.59 cM|8 C1 heme oxygenase 1 protein-coding 380654 Mm.34980 NM_001347060 ENSMUSG00000020014 Cfap54 4930485B16Rik|Gm872 - 10|10 C2 cilia and flagella associated protein 54 protein-coding 627775 Xlr5e-ps Xlr5e - X A7.3|X X-linked lymphocyte-regulated 5E, pseudogene pseudo 102638279 XR_384449 Gm34880 - - 15 F1|15 predicted gene, 34880 ncRNA 100532729 Mm.422674 B430305J03Rik - - 3 29.81 cM RIKEN cDNA B430305J03 gene unknown 16007 Mm.1231 NM_010516 ENSMUSG00000028195 Cyr61 AI325051|CCN1|Igfbp10 - 3 H2|3 70.18 cM cysteine rich protein 61 protein-coding 99485 Mm.316473 AA409016 - - - expressed sequence AA409016 unknown 209478 Mm.391153 NM_145952 ENSMUSG00000048720 Tbc1d12 BC033574 - 19|19 C3 TBC1D12: TBC1 domain family, member 12 protein-coding 102570 Mm.38775 NM_133980 ENSMUSG00000074028 Slc22a13 AI648912|OCTL1|OCTL3|ORCTL3 - 9|9 F3 solute carrier family 22 (organic cation transporter), member 13 protein-coding 384710 Gm5340 - - 7|7 A1 acidic ribosomal phosphoprotein P0 pseudogene pseudo 100036172 Appd2 - - - APP associated premature death 2 unknown 207683 Mm.245564 NM_170599 ENSMUSG00000022790 Igsf11 1700025L02Rik|BT-IgSF|Igsf13 - 16|16 B4 immunoglobulin superfamily, member 11 protein-coding 73938 Mm.399107 NR_040631 ENSMUSG00000086221 4930412B13Rik - - 2|2 E5 RIKEN cDNA 4930412B13 gene ncRNA 73028 2900046F13Rik - - 2|2 RIKEN cDNA 2900046F13 gene protein-coding 75904 Mm.414916 NR_155418 ENSMUSG00000084971 4930579D09Rik - - 6|6 G3 RIKEN cDNA 4930579D09 gene ncRNA 432447 Gm9824 EG432447 - 10|10 A4 phosphatidylethanolamine-binding protein pseudogene pseudo 78456 Mm.419813 C030002A05Rik - - 8|8 RIKEN cDNA C030002A05 gene protein-coding 100418448 Gm14274 - - 2|2 H3 N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10 pseudogene pseudo 19301 Mm.21853 NM_008993 ENSMUSG00000029499 Pxmp2 22kDa|PMP22 - 5 F|5 53.44 cM peroxisomal membrane protein 2 protein-coding 434775 Mm.150008 XR_001556 Gm5636 EG434775 - X|X A4 predicted gene 5636 ncRNA 21334 Mm.2374 NM_009312 ENSMUSG00000025400 Tac2 PPT-B|Tac3 - 10|10 D3 tachykinin 2 protein-coding 102632779 XR_390522 Gm30763 - - 4 B1|4 predicted gene, 30763 ncRNA 20440 Mm.149029 NM_145933 ENSMUSG00000022885 St6gal1 AW742324|Siat1|St6Gal-I|St6gal|St6galI - 16 B1|16 14.03 cM beta galactoside alpha 2,6 sialyltransferase 1 protein-coding 100043147 Mm.489001 NR_040518 ENSMUSG00000097056 Gm4262 - - 16 A1|16 predicted gene 4262 ncRNA 105245476 XR_873294 Gm40925 - - 13 A4|13 predicted gene, 40925 ncRNA 215001 Mm.328871 NM_001100454 ENSMUSG00000071192 Wfikkn1 Gasp2|Wfikkn - 17|17 A3.3 WAP, FS, Ig, KU, and NTR-containing protein 1 protein-coding 78648 Mm.366093 NR_130791 2400006E01Rik Gm43733|lncRNA-JADE - 3|3 B RIKEN cDNA 2400006E01 gene ncRNA 414282 LOC414282 - - 18|18 uncharacterized LOC414282 unknown 61937 D5Mit376 - - 5 86.87 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 376 unknown 171429 Mm.45201 NM_134420 ENSMUSG00000023259 Slc26a6 B930010B04Rik|CFEX|Pat-1|Pat1 - 9|9 F2 solute carrier family 26, member 6 protein-coding 666712 Gm8250 EG666712 - 19|19 B predicted gene 8250 pseudo 117066 Mm.485905 NM_026906 ENSMUSG00000074870 Cts3 1600000I23Rik - 13|13 B2 cathepsin 3 protein-coding 72919 2900019A20Rik - - 5|5 RIKEN cDNA 2900019A20 gene protein-coding 73082 3100003M19Rik - - 18|18 RIKEN cDNA 3100003M19 gene unknown 102635782 XR_385660 Gm33032 - - 17 D|17 predicted gene, 33032 ncRNA 108168283 XR_001781891 Gm46548 - - 16 B2|16 predicted gene, 46548 ncRNA 623030 Gm6386 EG623030 - 19|19 A calpastatin pseudogene pseudo 240641 Mm.278471 NM_183046 ENSMUSG00000024795 Kif20b 33cex|C330014J10Rik|MPP1|Mphosph1|magoo - 19|19 C1 kinesin family member 20B protein-coding 14245 Mm.153625 NM_015763 ENSMUSG00000020593 Lpin1 Lipin1|fld - 12 A1.1|12 7.9 cM lipin 1 protein-coding 102640529 XR_381306 Gm36568 - - 12 A1.1|12 predicted gene, 36568 ncRNA 260397 Sials - - - sialoadenitis susceptibility unknown 67457 Mm.202092 NM_026169 ENSMUSG00000024816 Frmd8 1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809 - 19|19 A FERM domain containing 8 protein-coding 664797 Gm7344 EG664797 - 9|9 A1 predicted gene 7344 pseudo 105243389 Gm39324 - - 9|9 predicted gene, 39324 ncRNA 51818 D17Leh66E - - - DNA segment, Chr 17, Lehrach 66 unknown 20981 Mm.4824 NM_016663 ENSMUSG00000030731 Syt3 AI385753|sytIII - 7 B3|7 28.83 cM synaptotagmin III protein-coding 100417521 Gm15065 - - X|X A7.3 ring finger and WD repeat domain 2 pseudogene pseudo 100418271 Gm19111 - - 15|15 B1 discs, large homolog-associated protein 5 pseudogene pseudo 17064 Mm.681 NM_010740 ENSMUSG00000027435 Cd93 6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68 - 2 G3|2 73.48 cM CD93 antigen protein-coding 100504512 Mm.159844 XR_105498 4930426I24Rik 6720480K08Rik - 12|12 C3 RIKEN cDNA 4930426I24 gene unknown 62997 D10Mit299 - - 10 34.73 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 299 unknown 230603 Mm.33091 NM_153392 ENSMUSG00000028555 Ttc39a 4922503N01Rik - 4|4 C7 tetratricopeptide repeat domain 39A protein-coding 100503912 Mm.425703 Gm11772 - - 11|11 83.96 cM predicted gene 11772 unknown 75332 Mm.108636 NR_040655 4930556G01Rik - - 4|4 A5 RIKEN cDNA 4930556G01 gene ncRNA 103762 Mm.393094 AI503301 - - - expressed sequence AI503301 protein-coding 102639377 XR_377269 Gm35704 - - 5 G3|5 predicted gene, 35704 ncRNA 20274 Mm.440889 NM_018852 ENSMUSG00000075316 Scn9a Nav1.7|PN1|mKIAA4197 - 2 C1.3|2 39.13 cM sodium channel, voltage-gated, type IX, alpha protein-coding 100049548 NR_030531 ENSMUSG00000077092 Mir742 Mirn742|mir-742|mmu-miR-742 - X A7.1|X microRNA 742 ncRNA 102635017 XR_389624 Gm32458 - - 3 A3|3 predicted gene, 32458 ncRNA 246277 Mm.296382 NM_144942 ENSMUSG00000023044 Csad Csd - 15|15 F2 cysteine sulfinic acid decarboxylase protein-coding 105245526 XR_873546 Gm40972 - - 13 B2|13 predicted gene, 40972 ncRNA 108167541 XR_001778603 Gm46046 - - 8 C2|8 predicted gene, 46046 ncRNA 100041253 Mm.422705 NM_001200055 ENSMUSG00000095996 Gm16513 - - 5|5 E3 predicted gene, Gm16513 protein-coding 12305 Mm.5021 NM_007584 ENSMUSG00000003534 Ddr1 6030432F18|AI323681|CD167a|Cak|Nep|PTK3A - 17 B1|17 18.7 cM discoidin domain receptor family, member 1 protein-coding 108554 Iapls1-27 - - - intracisternal A particle, lymphocyte specific 1-27 other 16258 In(17)1t In1 - - inversion, Chr 17 other 100504267 Mm.438550 NR_036469 ENSMUSG00000085912 Trp53cor1 Gm16197|linc-p21|lincRNA-p21 - 17 A3.3|17 15.04 cM tumor protein p53 pathway corepressor 1 ncRNA 20360 Mm.23662 NM_011351 ENSMUSG00000038777 Sema6c Semay|mKIAA1869 - 3|3 F2.1 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C protein-coding 105245563 XR_873685 Gm41005 - - 13 C1|13 predicted gene, 41005 ncRNA 245666 Mm.33027 NM_001005475 ENSMUSG00000041115 Iqsec2 Brag1 - X F3|X 68.46 cM IQ motif and Sec7 domain 2 protein-coding 62630 D14Mit116 - - 14 40.29 cM DNA segment, Chr 14, Massachusetts Institute of Technology 116 unknown 404634 Mm.272870 NM_207000 ENSMUSG00000020086 H2afy2 macroH2A2 - 10|10 B4 H2A histone family, member Y2 protein-coding 74708 Mm.246796 NM_029062 ENSMUSG00000026063 Pih1d3 4930521A18Rik - 1|1 B PIH1 domain containing 3 protein-coding 110616 Mm.271914 NM_029705 ENSMUSG00000021189 Atxn3 2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3 - 12|12 E ataxin 3 protein-coding 230734 Mm.258568 NM_153566 ENSMUSG00000028889 Yrdc AV303379|BC023823|IRIP|ITIP - 4|4 D2.2 yrdC domain containing (E.coli) protein-coding 227720 Mm.289686 NM_172268 ENSMUSG00000001855 Nup214 BC039282|CAN|D2H9S46E - 2 B|2 21.97 cM nucleoporin 214 protein-coding 727711 Gm15459 EyeLinc17 - 5 A1|5 heat shock protein 8 pseudogene pseudo 100861720 Gm21163 - - Y|Y predicted gene, 21163 protein-coding 111329 Atp7a-rs1 - - - ATPase, Cu ++ transporting, alpha polypeptide (Menkes syndrome), related sequence 1 pseudo 19607 Rb(7.18)9Lub Rb9Lub - - Robertsonian translocation, Chr 7 and 18, Lubeck 9 other 102632544 XR_374984 Gm30590 - - 2 F1|2 predicted gene, 30590 ncRNA 100126091 Mtbcq4 - - - multiple trait body composition QTL 4 unknown 111851 Iapls1-21 - - - intracisternal A particle, lymphocyte specific 1-21 other 240068 Mm.121392 NM_001024950 ENSMUSG00000067424 Zfp563 D10628|D130054H01|NTfin7|Zfp413 - 17|17 B1 zinc finger protein 563 protein-coding 225518 Mm.297645 NM_001033281 ENSMUSG00000069378 Prdm6 Gm92|PRISM - 18|18 D1 PR domain containing 6 protein-coding 102640139 LOC102640139 - - - predicted GPI-anchored protein 58 protein-coding 68246 Mm.319633 NR_077218 ENSMUSG00000086632 1700112J05Rik 1700110A09Rik - 5 C3.3|5 RIKEN cDNA 1700112J05 gene ncRNA 105245578 XM_017315699 LOC105245578 - - 13 B3 zinc finger protein 120-like protein-coding 72250 Mm.416854 1700029E06Rik - - 5|5 RIKEN cDNA 1700029E06 gene unknown 67773 Mm.425492 NM_026370 ENSMUSG00000030801 Kat8 2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1 - 7 F3|7 69.83 cM K(lysine) acetyltransferase 8 protein-coding 100124431 NR_030548 ENSMUSG00000077111 Mir18b Mirn18b|mir-18b|mmu-mir-18b - X A5|X microRNA 18b ncRNA 100416327 Gm18042 - - 10|10 B4 predicted gene, 18042 pseudo 666420 XR_001781243 Gm8094 EG666420 - 14|14 B predicted gene 8094 protein-coding 105244690 XR_868158 Gm40252 - - 4 D2.2|4 predicted gene, 40252 ncRNA 631581 Gm16436 EG666467 - X|X A6 predicted gene 16436 pseudo 257881 Mm.377282 NM_001011736 ENSMUSG00000094422 Olfr205 GA_x54KRFPKG5P-55543875-55542958|GA_x5J8B7U0478-6-340|MOR182-11P - 16|16 C1.3 olfactory receptor 205 protein-coding 56533 Mm.44606 NM_019958 ENSMUSG00000019775 Rgs17 6430507P11Rik|Rgsz2 - 10|10 A1 regulator of G-protein signaling 17 protein-coding 21815 Mm.101034 NM_009372 ENSMUSG00000047407 Tgif1 AA959811|AI462167|Tgif - 17|17 E1.3 TGFB-induced factor homeobox 1 protein-coding 71472 Mm.289706 NM_027804 ENSMUSG00000006676 Usp19 8430421I07Rik|AI047774|Zmynd9 - 9|9 F2 ubiquitin specific peptidase 19 protein-coding 329360 Mm.244652 NM_001033410 ENSMUSG00000089953 Rnf224 Gm757 - 2|2 A3 ring finger protein 224 protein-coding 100861794 Mm.402054 NR_077242 ENSMUSG00000106740 Gm21221 - - 5 G3|5 predicted gene, 21221 ncRNA 100418356 Gm12096 - - 11|11 A4 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 pseudogene pseudo 111002 Mm.482672 NR_028405 Marcksl1-ps4 Gm16264|Mlp-rs4|Mrp-rs4 - 13 A1|13 2.37 cM MARCKS-like 1, pseudogene 4 pseudo 67654 Mm.75066 NR_015490 ENSMUSG00000105734 4930558C23Rik - - 3|3 F2.1 RIKEN cDNA 4930558C23 gene ncRNA 359888 DXMgc29 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 29 unknown 101056084 XM_006519864 ENSMUSG00000114865 Gm29776 - - 14 C2|14 predicted gene, 29776 protein-coding 627525 Gm13768 - - 2|2 E1 protein tyrosine phosphatase, receptor type, J pseudogene pseudo 102635332 Gm28787 - - Y|Y predicted gene 28787 pseudo 102635368 XR_376888 Gm32725 - - 5 B3|5 predicted gene, 32725 ncRNA 102639756 XR_387272 Gm35992 - - 1 D|1 predicted gene, 35992 ncRNA 258003 Olfr1142-ps1 MOR177-13P - 2|2 D olfactory receptor 1142, pseudogene 1 pseudo 387177 NR_029569 ENSMUSG00000076361 Mir182 Mirn182|mir-182|mmu-mir-182 - 6|6 A3.3 microRNA 182 ncRNA 432460 Tmem229b-ps EG432460|Gm5423 - 10|10 B3 transmembrane protein 229B, pseudogene pseudo 100035235 Bwq7 - - 1 46.74 cM body weight, QTL 7 unknown 67188 Mm.391160 NR_033198 ENSMUSG00000097787 2700046G09Rik - - 19|19 C1 RIKEN cDNA 2700046G09 gene ncRNA 100048897 Mm.470104 4731419I09Rik - - - RIKEN cDNA 4731419I09 gene unknown 626661 Gm10156 EG626661 - 7|7 E3 predicted gene 10156 pseudo 14775 Mm.1090 NM_008160 ENSMUSG00000063856 Gpx1 AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx - 9 F2|9 59.24 cM glutathione peroxidase 1 protein-coding 102636098 XR_375916 Gm33265 - - 3 F2.2|3 predicted gene, 33265 ncRNA 100416406 Gm18100 - - 6|6 E1 ribosomal protein L17 pseudogene pseudo 668736 XM_001480994 Frg2f5 EG668736|Gm9324 - 14|14 E2.3 FSHD region gene 2 family member 5 protein-coding 233724 Mm.43212 NM_153525 ENSMUSG00000047554 Tmem41b 1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e - 7 E3|7 57.69 cM transmembrane protein 41B protein-coding 74437 Mm.85792 NM_001199996 ENSMUSG00000045330 4933402E13Rik - - X|X A6 RIKEN cDNA 4933402E13 gene protein-coding 385643 Mm.440414 NM_201375 ENSMUSG00000060459 Kng2 - - 16|16 B1 kininogen 2 protein-coding 108167765 Gm46187 - - 10 A1|10 predicted gene, 46187 pseudo 102636429 XR_377553 Gm33494 - - 6 B1|6 predicted gene, 33494 ncRNA 56173 Mm.328716 NM_019500 ENSMUSG00000047109 Cldn14 AI851731 - 16|16 C4 claudin 14 protein-coding 111672 Igh-C - - 12|12 immunoglobulin heavy chain constant region other 102635255 Gm32641 - - 13|13 predicted gene, 32641 ncRNA 624684 Gm6520 EG624684 - 3|3 H4 predicted gene 6520 pseudo 110120533 LOC110120533 - - - VISTA enhancer mm1111 biological-region 68355 Mm.45111 NR_027924 2010204K13Rik 0610010M13Rik|Cip7 - X|X A1.1 RIKEN cDNA 2010204K13 gene ncRNA 226407 Mm.489713 NM_178690 ENSMUSG00000036104 Rab3gap1 1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130 - 1|1 E3 RAB3 GTPase activating protein subunit 1 protein-coding 100036221 Cfid - - 10 24.48 cM cystic fibrosis intestinal distress unknown 59012 Mm.285934 NM_021509 ENSMUSG00000020000 Moxd1 3230402N08Rik|MNCb-5203 - 10|10 A4 monooxygenase, DBH-like 1 protein-coding 100359413 NR_102683 ENSMUSG00000084381 AA413626 - - 11|11 A1 ribosomal protein L17 pseudogene pseudo 670558 Mm.398582 NM_001204916 ENSMUSG00000091618 H60c 4632413I24Rik|Gm9491 - 10 A1|10 histocompatibility 60c protein-coding 623796 Mm.490409 NR_040414 ENSMUSG00000084274 Gm12504 - - 4 B1|4 prothymosin alpha pseudogene pseudo 107419 Das - - - dopamine agonist sensitivity unknown 114734 Skull26 E19|QTL-S19.1 - 19 13.82 cM skull morphology 26 unknown 72146 Mm.439929 2810001A02Rik - - 15|15 RIKEN cDNA 2810001A02 gene unknown 62416 D14Mit209 - - 14 15.06 cM DNA segment, Chr 14, Massachusetts Institute of Technology 209 unknown 102632455 XR_387641 Gm30522 - - 5 F|5 predicted gene, 30522 ncRNA 108167929 XR_001780338 LOC108167929 - - 11 E1 uncharacterized LOC108167929 ncRNA 667521 Gm13332 - - 2|2 A3 DiGeorge syndrome critical region gene 14 pseudogene pseudo 258081 Olfr1035-ps1 MOR171-31P - 2|2 D olfactory receptor 1035, pseudogene 1 pseudo 11488 Mm.89854 NM_009613 ENSMUSG00000020926 Adam11 AW060611|Mdc - 11 E1|11 66.48 cM a disintegrin and metallopeptidase domain 11 protein-coding 217830 Mm.218590 NM_145448 ENSMUSG00000021185 Dglucy 9030617O03Rik - 12|12 E D-glutamate cyclase protein-coding 102637765 XR_868275 Gm34493 - - 5 A1|5 predicted gene, 34493 ncRNA 102637442 XR_387998 ENSMUSG00000085464 Gm16208 - - 8 D3|8 53.53 cM predicted gene 16208 ncRNA 100417275 Gm15105 - - X|X F3 methylphosphate capping enzyme pseudogene pseudo 78405 Mm.20344 NM_198190 ENSMUSG00000074121 Ntf5 2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4 - 7 B3|7 29.3 cM neurotrophin 5 protein-coding 170740 Mm.339982 NM_133208 ENSMUSG00000005267 Zfp287 B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74 - 11|11 B2 zinc finger protein 287 protein-coding 105243814 XR_872233 Gm39573 - - 11 A1|11 predicted gene, 39573 ncRNA 13560 Mm.163132 NM_007893 ENSMUSG00000024137 E4f1 p120E4F|phi-AP3 - 17 A3.3|17 12.39 cM E4F transcription factor 1 protein-coding 667686 Mif-ps1 EG667686|Gm8762 - 1|1 E4 macrophage migration inhibitory factor, pseudogene 1 pseudo 93874 Mm.82308 NM_053128 ENSMUSG00000045498 Pcdhb3 PcdhbC - 18|18 B3 protocadherin beta 3 protein-coding 13611 Mm.33065 NM_010102 ENSMUSG00000044199 S1pr4 Edg6|Lpc1|S1p4 - 10|10 C1 sphingosine-1-phosphate receptor 4 protein-coding 54722 Mm.248361 NM_018769 ENSMUSG00000029821 Gsdme 2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15 - 6|6 B2.3 gasdermin E protein-coding 108168267 Mm.390796 XR_001781773 5330439K02Rik - - 15|15 F1 RIKEN cDNA 5330439K02 gene ncRNA 258431 Mm.271359 NM_146439 ENSMUSG00000094182 Olfr937 MOR171-24 - 9|9 A5.1 olfactory receptor 937 protein-coding 320714 Mm.39461 NM_177240 ENSMUSG00000038102 Trappc11 AW558465|D030016E14Rik|R75422 - 8|8 B1.1 trafficking protein particle complex 11 protein-coding 12156 Mm.103205 NM_007553 ENSMUSG00000027358 Bmp2 AI467020|Bmp2a - 2 F2|2 65.21 cM bone morphogenetic protein 2 protein-coding 105243507 XR_871040 Gm39409 - - 9 E3.3|9 predicted gene, 39409 ncRNA 102467482 n-TDgtc6 n-Td6 - 1 H3|1 nuclear encoded tRNA aspartic acid 6 (anticodon GTC) tRNA 14394 Mm.439668 NM_010250 ENSMUSG00000010803 Gabra1 GABAA-alpha1|GABAAR-alpha1|Gabra-1 - 11 A5|11 24.97 cM gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 protein-coding 105247029 XR_880785 Gm42211 - - 3 B|3 predicted gene, 42211 ncRNA 669723 Gm9466 - - 10|10 C1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 pseudogene pseudo 493168 Tesq2 - - - testis weight QTL 2 unknown 11872 Mm.57008 NM_019915 ENSMUSG00000030651 Art2b ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2 - 7 E2|7 54.61 cM ADP-ribosyltransferase 2b protein-coding 66538 Mm.39485 NM_175109 ENSMUSG00000051518 Rps19bp1 2510038A11Rik|AI604923|S19BP - 15|15 E1 ribosomal protein S19 binding protein 1 protein-coding 105244125 XR_866150 Gm39793 - - 2 B|2 predicted gene, 39793 ncRNA 100503085 Mm.379256 NM_001195075 ENSMUSG00000014164 Klhl3 7530408C15Rik|AI430941|EG627648 - 13|13 B1 kelch-like 3 protein-coding 552878 Mm.445707 C130023C23Rik - - - Riken cDNA C130023C23 gene unknown 233328 Mm.33284 NM_146191 ENSMUSG00000015133 Lrrk1 AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790 - 7|7 C leucine-rich repeat kinase 1 protein-coding 111964 Mltr3 - - - modified polytropic long terminal repeat containing proviral locus 3 other 75689 Mm.44408 NM_080846 ENSMUSG00000020928 Higd1b 2310056K19Rik - 11|11 E1 HIG1 domain family, member 1B protein-coding 105246150 XR_876216 Gm41486 - - 16 C3.3|16 predicted gene, 41486 ncRNA 241116 Mm.186404 NM_172848 ENSMUSG00000047021 Cfap65 A230051F10|B230363K08Rik|Ccdc108 - 1|1 C4 cilia and flagella associated protein 65 protein-coding 105244257 Gm39899 - - 2|2 predicted gene, 39899 ncRNA 100036048 Blacv1 Vol8a - - basolateral amygdala complex volume 1 unknown 51975 D4Ggc2e - - - DNA segment, Chr 4, G. Consalez 2, expressed unknown 503844 Mm.24663 NM_007448 ENSMUSG00000053961 Ang5 - - 14 C1|14 angiogenin, ribonuclease A family, member 5 protein-coding 74222 Mm.159143 NM_028826 ENSMUSG00000034219 Sept14 1700016K13Rik - 5|5 G1.3 septin 14 protein-coding 69211 Mm.259768 NR_045474 2310081J21Rik - - 13|13 A5 RIKEN cDNA 2310081J21 gene ncRNA 100048917 Mm.389208 B930036N10Rik - - 1 H3|1 RIKEN cDNA B930036N10 gene unknown 27963 D9Wsu74e - - 9 29.85 cM DNA segment, Chr 9, Wayne State University 74, expressed unknown 15149 Hc18 Cen18 - - heterochromatin, Chr 18 other 102636335 XR_870308 Gm33433 - - 8 A3|8 predicted gene, 33433 ncRNA 327837 Mm.392258 B930054O08 - - 10|10 D2 uncharacterized protein B930054O08 protein-coding 77329 Mm.474624 C030010C08Rik - - 13|13 B3 RIKEN cDNA C030010C08 gene protein-coding 320723 Mm.471301 B230220B15Rik - - 13|13 D2.1 RIKEN cDNA B230220B15 gene unknown 103733 Mm.479145 NM_134024 ENSMUSG00000035198 Tubg1 1500010O08Rik|AI451582|AI503389|Tubg - 11 D|11 64.24 cM tubulin, gamma 1 protein-coding 15932 Mm.358608 NM_008325 ENSMUSG00000033540 Idua 6030426D08 - 5 F|5 53.24 cM iduronidase, alpha-L- protein-coding 68764 Mm.60083 NM_001024478 ENSMUSG00000035860 Cdhr3 1110049B09Rik|BB172694|Cdh28 - 12|12 A3 cadherin-related family member 3 protein-coding 62185 D15Mit40 - - 15 57.22 cM DNA segment, Chr 15, Massachusetts Institute of Technology 40 unknown 69095 Mm.490529 1810012K08Rik - - 2|2 RIKEN cDNA 1810012K08 gene ncRNA 54192 Mm.8034 NM_017471 ENSMUSG00000000003 Pbsn PB|Prbs - X|X B probasin protein-coding 73827 Mm.24630 NM_178066 ENSMUSG00000047090 Tmem198b 1110012D08Rik - 10|10 D3 transmembrane protein 198b protein-coding 21780 Mm.229292 NM_009360 ENSMUSG00000003923 Tfam AI661103|Hmgts|mtTFA|tsHMG - 10 B5.3|10 36.83 cM transcription factor A, mitochondrial protein-coding 399612 9630010G10Rik - - - RIKEN cDNA 9630010G10 gene protein-coding 105242758 XR_001785357 Gm38888 - - 6 F1|6 predicted gene, 38888 ncRNA 66203 Mm.292457 NM_025420 ENSMUSG00000027912 Lce1m 1110059L13Rik|AI131654|Lce5a|Sprrl10 - 3 F1|3 late cornified envelope 1M protein-coding 100036418 Gvhd5 - - 4 81.42 cM graft-versus host disease 5 unknown 58208 Mm.392694 NM_021399 ENSMUSG00000048251 Bcl11b 9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1 - 12 F1|12 59.1 cM B cell leukemia/lymphoma 11B protein-coding 105243862 Gm39593 - - 1|1 predicted gene, 39593 ncRNA 102637097 XR_382518 Gm38494 - - 13 B1|13 predicted gene, 38494 ncRNA 100415787 Mm.392206 NR_045945 ENSMUSG00000084880 Tomm6os Gm14872|Prickle4os - 17 C|17 translocase of outer mitochondrial membrane 6, opposite strand ncRNA 100417703 Gm18772 - - 16|16 C1.3 RNA terminal phosphate cyclase-like 1 pseudogene pseudo 100503070 Gm11318 Vmn1r-ps122 - 13 A3.1|13 9.39 cM vomeronasal 1 receptor Vmn1r-ps122 pseudogene pseudo 85070 D6Mit74 - - 6 23.7 cM DNA segment, Chr 6, Massachusetts Institute of Technology 74 unknown 100124491 NR_030544 ENSMUSG00000077962 Mir874 Mirn874|mir-874|mmu-mir-874 - 13 B1|13 microRNA 874 ncRNA 105244034 XM_017314070 LOC105244034 - - 1 H5 uncharacterized LOC105244034 protein-coding 100862122 LOC100862122 - - 14 A1 uncharacterized LOC100862122 pseudo 623568 Gm6440 EG623568 - 16|16 A3 Rps20 pseudogene pseudo 105244650 XR_868001 Gm40223 - - 4 C7|4 predicted gene, 40223 ncRNA 226356 Mm.297290 NM_001115074 ENSMUSG00000036962 Cfap221 Gm101|Pcdp1 - 1|1 E2.3 cilia and flagella associated protein 221 protein-coding 102634822 Gm11131 - - 17|17 18.65 cM predicted gene 11131 ncRNA 105243974 XR_872342 Gm39674 - - 11 A4|11 predicted gene, 39674 ncRNA 628368 Vmn2r-ps37 EG628368 - 7|7 A1 vomeronasal 2, receptor, pseudogene 37 pseudo 102639853 Gm36067 - - 7|7 predicted gene, 36067 ncRNA 109685 Mm.447916 NM_178020 ENSMUSG00000036091 Hyal3 Hyl3 - 9 F1|9 58.19 cM hyaluronoglucosaminidase 3 protein-coding 100416447 Gm18117 - - 1|1 C1.1 sorbitol dehydrogenase pseudogene pseudo 667023 Gm8425 EG667023 - 16|16 B3 predicted gene 8425 pseudo 28214 D6Wum16 242D11L2 - - DNA segment, Chr 6, Washington University School of Medicine 16 unknown 75203 Mm.490940 NR_040598 4930539N22Rik - - 3|3 A1 RIKEN cDNA 4930539N22 gene ncRNA 666262 Gm8010 EG666262 - 1|1 H4 translin-associated factor X pseudogene pseudo 434484 Mm.445821 NM_001013817 ENSMUSG00000070031 Sp140 - - 1|1 C5 Sp140 nuclear body protein protein-coding 109483 Sles3 - - 3 34.91 cM systemic lupus erythmatosus suppressor 3 unknown 382348 Mm.377897 NM_001010837 ENSMUSG00000100186 Taar8b Gm1149|taR-8b - 10|10 A4 trace amine-associated receptor 8B protein-coding 22710 Mm.296100 NM_144515 ENSMUSG00000051341 Zfp52 KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29 - 17 A3.2|17 11.4 cM zinc finger protein 52 protein-coding 104162 Lyx1 Lyx-1 - - lymphocyte antigen X 1 protein-coding 54427 Mm.13433 NM_019448 ENSMUSG00000000730 Dnmt3l D6Ertd14e|ecat7 - 10 C1|10 39.72 cM DNA (cytosine-5-)-methyltransferase 3-like protein-coding 61410 D5Mit175 - - 5 52.15 cM DNA segment, Chr 5, Massachusetts Institute of Technology 175 unknown 105246931 XR_880471 Gm42125 - - 5 E4|5 predicted gene, 42125 ncRNA 105246423 XR_877365 Gm41713 - - 18 B3|18 predicted gene, 41713 ncRNA 668202 Gm9043 EG668202 - X|X C3 predicted gene 9043 protein-coding 106780823 Obox4-ps39 Gm27258 - 7 A1|7 oocyte specific homeobox 4, pseudogene 39 pseudo 102636050 Gm33229 - - 2|2 predicted gene, 33229 pseudo 102640603 XR_380909 Gm36628 - - 10 D2|10 predicted gene, 36628 ncRNA 13435 Mm.5001 NM_007872 ENSMUSG00000020661 Dnmt3a MmuIIIA - 12|12 A1.1 DNA methyltransferase 3A protein-coding 22404 Mm.274948 NM_011717 ENSMUSG00000024050 Wiz - - 17|17 B1 widely-interspaced zinc finger motifs protein-coding 102640821 Mm.403964 XR_379317 ENSMUSG00000110823 Gm36799 - - 9 A5.1|9 predicted gene, 36799 ncRNA 16155 Mm.4154 NM_008349 ENSMUSG00000022969 Il10rb 6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2 - 16 C3.3|16 52.87 cM interleukin 10 receptor, beta protein-coding 58867 Mm.214217 NM_021482 ENSMUSG00000040231 Syngr4 1700016O14Rik - 7|7 B3 synaptogyrin 4 protein-coding 74874 4930444E06Rik - - 2|2 RIKEN cDNA 4930444E06 gene protein-coding 493170 Vmbic1 - - 1 67.71 cM ventral midbrain iron content 1 unknown 231803 Mm.61193 NM_144913 ENSMUSG00000029726 Mepce Bcdin3|D5Wsu46e - 5 G2|5 76.7 cM methylphosphate capping enzyme protein-coding 100036329 Abfp3 - - - abdominal fat percentage 3 unknown 112320 Mwq4 - - - molecular weight of quadriceps QTL 4 unknown 102632201 Gm30341 - - 3 A2|3 predicted gene, 30341 pseudo 19455 Rb(10.11)5Rma Rb5Rma - - Robertsonian translocation, Chr 10 and 11, Universita di Roma 5 other 105246522 Gm26977 - - 18|18 predicted gene, 26977 pseudo 101055697 Gm29712 - - 11 B3|11 predicted gene, 29712 pseudo 381280 Mm.384762 NM_198652 ENSMUSG00000044783 Hjurp 6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1 - 1|1 D Holliday junction recognition protein protein-coding 108172 Ubl1-ps2 Pic1-ps2 - - ubiquitin-like 1, pseudogene 2 pseudo 17173 Mm.196417 NM_008554 ENSMUSG00000009248 Ascl2 2410083I15Rik|Mash2|bHLHa45 - 7 F5|7 88.08 cM achaete-scute family bHLH transcription factor 2 protein-coding 667610 Gm8724 EG667610 - 6|6 F3 predicted pseudogene 8724 pseudo 242570 Mm.185636 NM_183024 ENSMUSG00000035275 Raver2 A430091O22Rik - 4|4 C6 ribonucleoprotein, PTB-binding 2 protein-coding 56086 Mm.326055 NM_023871 ENSMUSG00000054766 Set 2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I - 2|2 B SET nuclear oncogene protein-coding 100035260 Wght4 - - - weight 4 unknown 100036257 Bmd22 - - - bone mineral density 22 unknown 102632907 Gm12891 - - 4|4 D2.2 CDC28 protein kinase regulatory subunit 2 pseudogene pseudo 98758 Mm.422979 NM_133834 ENSMUSG00000042079 Hnrnpf 4833420I20Rik|AA407306|Hnrpf - 6|6 F1 heterogeneous nuclear ribonucleoprotein F protein-coding 117014 Tafat - - 4 74.75 cM TallyHo associated mesenteric fat pad weight unknown 245472 Gm4989 EG245472 - X|X A7.3 synaptophysin-like protein pseudogene pseudo 100036411 Tcq2 - - - total cholesterol QTL 2 unknown 239650 Mm.54140 NM_177716 ENSMUSG00000029875 Ccdc184 5630400A08|AI836003 - 15|15 F1 coiled-coil domain containing 184 protein-coding 319314 Mm.393810 NR_045989 ENSMUSG00000087132 A930001C03Rik - - 19|19 A RIKEN cDNA A930001C03 gene ncRNA 76936 Mm.311439 NM_029804 ENSMUSG00000059208 Hnrnpm 2610023M21Rik|AA409009|Hnrpm|mKIAA4193 - 17|17 B1 heterogeneous nuclear ribonucleoprotein M protein-coding 100416555 Gm11862 - - 4|4 A2 SEC23A pseudogene pseudo 102639564 Gm35847 - - 13|13 predicted gene, 35847 ncRNA 102467321 n-THgtg1 n-Th11 - 3 F2.1|3 nuclear encoded tRNA histidine 1 (anticodon GTG) tRNA 12879 Mm.52265 NM_138686 ENSMUSG00000062563 Cys1 2900006B19Rik|AV218859|Ccap|ck|cpk - 12 A1.3|12 8.49 cM cystin 1 protein-coding 56739 Mm.23149 NM_020002 ENSMUSG00000002324 Rec8 Rec8L1|mrec - 14 C3|14 28.19 cM REC8 meiotic recombination protein protein-coding 12238 Mm.249586 NM_147778 ENSMUSG00000051154 Commd3 AW550818|Bup|D2Ertd542e - 2 A3|2 12.9 cM COMM domain containing 3 protein-coding 54198 Mm.277870 NM_017472 ENSMUSG00000019804 Snx3 SDP3 - 10 B2|10 22.89 cM sorting nexin 3 protein-coding 623064 Gm6390 - - 10|10 A4 lactate dehydrogenase A pseudogene pseudo 67769 Mm.138321 NM_026367 ENSMUSG00000039210 Gpatch2 5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2 - 1|1 H5 G patch domain containing 2 protein-coding 50525 Mm.31701 NM_015773 ENSMUSG00000022783 Spag6l PF16|Spag6|Spag6l1 - 16|16 A3 sperm associated antigen 6-like protein-coding 66142 Mm.197728 NM_025379 ENSMUSG00000031231 Cox7b 1100001F07Rik|1110004F07Rik|C80563 - X|X D cytochrome c oxidase subunit VIIb protein-coding 66737 Mm.445908 NR_110443 ENSMUSG00000090255 4921534H16Rik - - 9|9 E3.3 RIKEN cDNA 4921534H16 gene ncRNA 244913 Gm4978 EG244913 - 9|9 C ribosomal protein L7A pseudogene pseudo 102640013 Gm36189 - - 6|6 predicted gene, 36189 pseudo 105246110 XR_876062 Gm41452 - - 16 B3|16 predicted gene, 41452 ncRNA 114157 Taste5 - - - taste-saccharin preference 5 unknown 217893 Mm.35754 NM_198165 ENSMUSG00000021143 Pacs2 6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602 - 12|12 F1 phosphofurin acidic cluster sorting protein 2 protein-coding 15526 Mm.209419 NM_010481 ENSMUSG00000024359 Hspa9 74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74 - 18 B1|18 18.8 cM heat shock protein 9 protein-coding 102640149 XR_380899 Gm36284 - - 10 D2|10 predicted gene, 36284 ncRNA 12488 Mm.218637 NM_009847 ENSMUSG00000061665 Cd2ap AL024079|C78928|METS-1|Mets1 - 17|17 B3 CD2-associated protein protein-coding 11625 Mm.197554 NM_013465 ENSMUSG00000022868 Ahsg - - 16 B1|16 13.74 cM alpha-2-HS-glycoprotein protein-coding 225912 Mm.252701 NM_201351 ENSMUSG00000034445 Cyb561a3 2310004G04Rik|Cybasc3|Lcytb - 19|19 A cytochrome b561 family, member A3 protein-coding 328563 Mm.17957 NM_001143686 ENSMUSG00000091694 Apol11b A330102K04Rik - 15|15 E1 apolipoprotein L 11b protein-coding 102632575 Gm30613 - - 5|5 predicted gene, 30613 ncRNA 227197 Mm.290791 NM_145518 ENSMUSG00000025968 Ndufs1 5830412M15Rik|9930026A05Rik - 1|1 C2 NADH dehydrogenase (ubiquinone) Fe-S protein 1 protein-coding 68523 Mm.279 NM_026753 ENSMUSG00000031879 Fam96b 1110019N10Rik - 8|8 D3 family with sequence similarity 96, member B protein-coding 80294 Mm.203556 NM_030262 ENSMUSG00000020260 Pofut2 2310011G23Rik|AI256847|BC003494|C21orf80|FUT13 - 10|10 C1 protein O-fucosyltransferase 2 protein-coding 100036041 Feml4 - - - femur length in high growth mice 4 unknown 665977 Gm7874 EG665977 - 18|18 A2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100035477 Bmc2 - - - bone mineral content 2 unknown 108511950 Gata2r1 - - 6 D1 Gata2R1 erythroid cis-regulatory module biological-region 16316 In(X)3H-p In(X)3H|In3H - - inversion, Chr X, Harwell 3, proximal other 19656 Mm.24718 NM_009033 ENSMUSG00000037070 Rbmxl1 Hnrpg|Rbmx|Rbmxrt - 8|8 C1 RNA binding motif protein, X-linked like-1 protein-coding 105246490 Gm41775 - - 18|18 predicted gene, 41775 ncRNA 329876 Mm.389583 Gm12680 A930009N24 - 4|4 C4 predicted gene 12680 unknown 101055894 LOC101055894 - - X A7.3 non-histone chromosomal protein HMG-14 pseudogene pseudo 105247190 Gm42330 - - 4|4 predicted gene, 42330 ncRNA 18310 Mm.250444 NM_146652 ENSMUSG00000043605 Olfr13 K7|MOR261-6 - 6|6 B2.1 olfactory receptor 13 protein-coding 102467273 n-TCgca17 n-Tc17 - 6 B2.3|6 nuclear encoded tRNA cysteine 17 (anticodon GCA) tRNA 102029 AI315376 - - - expressed sequence AI315376 unknown 102639119 XR_375943 ENSMUSG00000105102 Gm35507 - - 3 F2.3|3 predicted gene, 35507 ncRNA 71785 Mm.390122 NM_027924 ENSMUSG00000032006 Pdgfd 1110003I09Rik - 9|9 A1 platelet-derived growth factor, D polypeptide protein-coding 382722 Gm5191 EG382722 - 13|13 A1 basic leucine zipper and W2 domains 1 pseudogene pseudo 109975 Plcd2 - - - phospholipase C, delta 2 protein-coding 100035085 W10q17 - - - weight 10 weeks QTL 17 unknown 258505 Mm.353371 NM_146512 ENSMUSG00000058802 Olfr97 MOR156-2 - 17|17 B1 olfactory receptor 97 protein-coding 77591 Mm.133560 NM_029936 ENSMUSG00000053289 Ddx10 4632415A01Rik|AI646054 - 9|9 A5.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 protein-coding 100417117 Gm15011 - - X|X F1 NMD3 homolog pseudogene pseudo 100417424 Gm18605 - - 14|14 D3 ubiquitin specific peptidase 15 pseudogene pseudo 16666 Mm.422799 NM_008470 ENSMUSG00000053797 Krt16 AI324768|CK-16|K16|Krt1-16 - 11|11 D keratin 16 protein-coding 624582 Mm.439775 NR_038091 Morf4l1-ps1 A730098P11Rik - 16|16 B1 mortality factor 4 like 1, pseudogene 1 pseudo 61814 D2Mit368 - - 2 24.51 cM DNA segment, Chr 2, Massachusetts Institute of Technology 368 unknown 102636785 XR_001783022 Gm33760 - - 4|4 predicted gene, 33760 ncRNA 13143 Mm.304472 NM_010019 ENSMUSG00000032380 Dapk2 - - 9 C|9 35.75 cM death-associated protein kinase 2 protein-coding 17286 Mm.341398 NM_008584 ENSMUSG00000036144 Meox2 AI528662|Gax|Mox-2|Mox2 - 12 A3|12 16.84 cM mesenchyme homeobox 2 protein-coding 57778 Mm.138913 NM_019679 ENSMUSG00000055805 Fmnl1 8030453N10Rik|AI553564|Fmnl|Fnrl|Frls - 11|11 E1 formin-like 1 protein-coding 53812 D17Tu53A D17Tu53 - - DNA segment, Chr 17, Tubingen 53A unknown 97096 C85129 - - - expressed sequence C85129 unknown 68291 Mm.291779 NM_026658 ENSMUSG00000032342 Mto1 2310039H01Rik|5730419A02Rik - 9|9 E1 mitochondrial tRNA translation optimization 1 protein-coding 102637633 Gm34395 - - 1|1 predicted gene, 34395 ncRNA 77983 Mm.153204 NR_045454 ENSMUSG00000087024 B230119M05Rik - - X|X E3 RIKEN cDNA B230119M05 gene ncRNA 235048 Mm.292381 NM_181419 ENSMUSG00000062794 Zfp599 6720416P20 - 9|9 A3 zinc finger protein 599 protein-coding 212326 Mm.51259 NM_153535 ENSMUSG00000070044 Fam149a AW213256|mKIAA4166 - 8|8 B1.1 family with sequence similarity 149, member A protein-coding 105243300 XR_879240 LOC105243300 - - 8 E1 uncharacterized LOC105243300 ncRNA 100039393 Gm20803 - - Y|Y predicted gene, 20803 protein-coding 100124389 Traj14 Gm16657 - 14|14 C2 T cell receptor alpha joining 14 pseudo 100312987 Mm.445254 NM_001167677 ENSMUSG00000091215 Pate1 Gm17252|Pate - 9 A4|9 20.39 cM prostate and testis expressed 1 protein-coding 100510874 Mm.425537 B930053N02Rik EG621377 - 8 B3.3|8 RIKEN cDNA B930053N02 gene unknown 112133 Aaq1 - - 15 16.82 cM alcohol acceptance QTL 1 unknown 100039624 NM_001081681 Gm12166 - - 11|11 B1.1 SFT2 domain containing 1 pseudogene pseudo 620574 Mm.482065 NM_001167153 ENSMUSG00000094298 Gm6164 EG620574|Vmn1r96 - 7|7 A3 predicted gene 6164 protein-coding 432636 Mm.447413 XR_001780549 Gm5432 EG432636 - 12|12 A1.1 predicted gene 5432 ncRNA 56451 Mm.29845 NM_019879 ENSMUSG00000052738 Suclg1 1500000I01Rik|Sucla1 - 6|6 C1 succinate-CoA ligase, GDP-forming, alpha subunit protein-coding 108169106 Gm43117 - - 5 B1|5 predicted gene 43117 pseudo 319543 Mm.165401 A730059M13Rik - - 4|4 RIKEN cDNA A730059M13 gene protein-coding 61820 D2Mit346 - - 2 100.84 cM DNA segment, Chr 2, Massachusetts Institute of Technology 346 unknown 28171 D6Wum8 G.555 - - DNA segment, Chr 6, Washington University School of Medicine 8 unknown 320310 Mm.438713 C730045O03Rik - - 1|1 RIKEN cDNA C730045O03 gene protein-coding 100034911 Hdlq29 - - 17 29.73 cM HDL QTL 29 unknown 77044 Mm.17166 NM_175251 ENSMUSG00000033237 Arid2 1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200 - 15|15 F1 AT rich interactive domain 2 (ARID, RFX-like) protein-coding 69677 Mm.45901 NM_027163 ENSMUSG00000026985 Il1f8 2310043N20Rik|Il36b - 2 A3|2 16.21 cM interleukin 1 family, member 8 protein-coding 102634008 XR_379356 Gm31698 - - 9 A5.3|9 predicted gene, 31698 ncRNA 77768 A430105P17Rik - - 13|13 RIKEN cDNA A430105P17 gene protein-coding 105242628 XR_868972 Gm38787 - - 6 B1|6 predicted gene, 38787 ncRNA 52682 D11Ertd726e - - - DNA segment, Chr 11, ERATO Doi 726, expressed protein-coding 75303 Mm.159495 4930562A09Rik - - 5|5 F RIKEN cDNA 4930562A09 gene unknown 69641 Mm.475762 NM_027149 ENSMUSG00000037957 Wdr20 2310040A13Rik|AI549910|Wdr20a - 12|12 F1 WD repeat domain 20 protein-coding 108168505 Gm46701 - - Y A1|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 100177 Mm.276096 NM_177462 ENSMUSG00000042408 Zmym6 9330177P20Rik|AI593204|AI661340|D4Wsu24e|Zfp258 - 4 D2.2|4 61.25 cM zinc finger, MYM-type 6 protein-coding 108168720 XR_001783081 LOC108168720 - - - uncharacterized LOC108168720 ncRNA 102638401 XR_866805 Gm34978 - - 2 G1|2 predicted gene, 34978 ncRNA 21835 Mm.28585 NM_009381 ENSMUSG00000035686 Thrsp S14|SPOT14 - 7|7 E1 thyroid hormone responsive protein-coding 620709 Mm.99499 NM_177840 ENSMUSG00000045684 Lcn6 9230101D24Rik - 2|2 A3 lipocalin 6 protein-coding 75930 Mm.195663 NR_015535 ENSMUSG00000110629 4930567H12Rik 4930579P07Rik - 8|8 E2 RIKEN cDNA 4930567H12 gene ncRNA 100040914 Mm.399127 Gm10518 - - 1|1 H4 predicted gene 10518 unknown 54369 Mm.12951 NM_018757 ENSMUSG00000032478 Nme6 nm23-M6 - 9|9 F2 NME/NM23 nucleoside diphosphate kinase 6 protein-coding 207375 Mm.391339 NM_198105 ENSMUSG00000025262 Fam120c D930001I21Rik|ORF34 - X|X F3 family with sequence similarity 120, member C protein-coding 668021 Gm8929 EG668021 - 5 A1|5 anaphase-promoting complex subunit 5 pseudogene pseudo 112078 Oriq2 - - 2 31.66 cM ovulation rate QTL 2 unknown 75654 Mm.441403 1700003O08Rik - - 10|10 B3 RIKEN cDNA 1700003O08 gene protein-coding 319398 NM_176905 D330005C11Rik - - 5|5 G2 RIKEN cDNA D330005C11 gene protein-coding 102640144 Mm.6660 Gm17167 - - 4|4 22.32 cM predicted gene 17167 protein-coding 269700 Mm.184589 NM_181421 ENSMUSG00000042744 Hectd4 A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614 - 5|5 F HECT domain E3 ubiquitin protein ligase 4 protein-coding 258702 Mm.377643 NM_146707 ENSMUSG00000063116 Olfr410 MOR255-5 - 11|11 B5 olfactory receptor 410 protein-coding 224824 Mm.299399 NM_145488 ENSMUSG00000002763 Pex6 AI132582|D130055I09Rik|mKIAA4177 - 17|17 C peroxisomal biogenesis factor 6 protein-coding 73608 Mm.86833 NM_028584 ENSMUSG00000001672 Marveld3 1810006A16Rik|AI642133|Marvd3|Mrvldc3 - 8|8 D3 MARVEL (membrane-associating) domain containing 3 protein-coding 100042094 Rps27a-ps1 Gm3663 - 1 C1.1|1 ribosomal protein S27A, pseudogene 1 pseudo 628081 Gm6838 EG628081 - 12|12 A1.3 predicted gene 6838 pseudo 102640776 Gm36762 - - 6|6 predicted gene, 36762 pseudo 67164 Mm.46777 NM_026010 ENSMUSG00000030725 Lipt2 2610209A20Rik - 7|7 E2 lipoyl(octanoyl) transferase 2 (putative) protein-coding 28047 D16Ium30e D16Ium30 - - DNA segment, Chr 16, Indiana University Medical 30, expressed unknown 22111 Tspyl-ps - - 12|12 C1 testis-specific protein, Y-encoded-like, pseudogene pseudo 114727 Skull19 E13|QTL-S13.1 - - skull morphology 19 unknown 492903 Lmr9 - - 4 2.04 cM leishmaniasis resistance 9 unknown 108134 Rps6ka2c 90kDa - - ribosomal protein S6 kinase, polypeptide 2, D17Leh66c region protein-coding 105242636 XR_869004 Gm38795 - - 6 B2.1|6 predicted gene, 38795 ncRNA 382843 Rpl21-ps4 EG382843|Gm5201 - 14|14 A1 ribosomal protein L21, pseudogene 4 pseudo 384883 Gm5359 EG384883|Map1lc3-ps6 - 8|8 C5 microtubule-associated protein 1 light chain 3 pseudogene copy 6 pseudo 27641 D13Die25 - - - DNA segment, Chr 13, Dietrich 25 unknown 545366 Mm.439660 NM_001025575 ENSMUSG00000033898 Cfhr2 Cfhrb_4/2 - 1|1 F complement factor H-related 2 protein-coding 109279912 LOC109279912 Mm136 - - VISTA enhancer mm136 biological-region 102640197 Gm29131 - - Y|Y predicted gene 29131 ncRNA 105246435 XR_877403 Gm41725 - - 18 D1|18 predicted gene, 41725 ncRNA 107250 Mm.24417 NM_178929 ENSMUSG00000025213 Kazald1 AI842353|Bono1|IGFBP-rP10 - 19|19 C3 Kazal-type serine peptidase inhibitor domain 1 protein-coding 26898 Mm.31948 NM_012007 ENSMUSG00000055298 Ctsj CATP|CatRLP|Ctsp - 13 B2|13 32.62 cM cathepsin J protein-coding 105243394 Gm39328 - - 9|9 predicted gene, 39328 ncRNA 330463 Mm.136456 NM_177888 ENSMUSG00000055150 Zfp78 A330079D15|KRAB12|Zfp77 - 7 A1|7 3.69 cM zinc finger protein 78 protein-coding 102633812 XR_388210 Gm31546 - - 8 E2|8 predicted gene, 31546 ncRNA 105243776 Gm39561 - - 12|12 predicted gene, 39561 protein-coding 100417258 Gm18486 - - 9|9 D crumbs homolog 1 pseudogene pseudo 54169 Mm.248967 NM_017479 ENSMUSG00000021767 Kat6b AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf - 14|14 A3 K(lysine) acetyltransferase 6B protein-coding 239102 Mm.441113 NM_001039198 ENSMUSG00000040721 Zfhx2 ZFH-5 - 14|14 C3 zinc finger homeobox 2 protein-coding 100039716 Gm15131 - - X|X F3 ribosomal protein L13 pseudogene pseudo 434019 Mm.445137 NR_152156 ENSMUSG00000073045 Gm5570 EG434019 - 6 B3|6 predicted gene 5570 ncRNA 225432 Mm.329400 NM_172626 ENSMUSG00000024491 Rbm27 A730010I06|AI043120|Psc1|mKIAA1311 - 18|18 B3 RNA binding motif protein 27 protein-coding 74685 Mm.38634 NM_029053 ENSMUSG00000022759 Lrrc74b 4930451C15Rik|mCG12354|mCP17390 - 16|16 A3 leucine rich repeat containing 74B protein-coding 65019 Mm.140380 NM_022891 ENSMUSG00000071415 Rpl23 2810009A01Rik - 11 D|11 61.1 cM ribosomal protein L23 protein-coding 105244911 XR_872790 Gm40434 - - 12 C2|12 predicted gene, 40434 ncRNA 110433 Evi16 - - - ecotropic viral integration site 16 protein-coding 665413 Mm.491664 Gm7628 EG665413 - 9|9 F2 predicted gene 7628 protein-coding 14763 Mm.409670 NM_010338 ENSMUSG00000039904 Gpr37 AI848630|Pael-R - 6 A3.1|6 11.65 cM G protein-coupled receptor 37 protein-coding 80978 Mm.160368 NM_030726 ENSMUSG00000059408 Mrgprh Gpr90|Mgrb|MrgH - 17|17 A1 MAS-related GPR, member H protein-coding 100039205 Gm12394 - - 4|4 A5 predicted gene 12394 unknown 102633516 Mm.421426 XR_379475 Peak1os Gm26589 - 9 B|9 pseudopodium-enriched atypical kinase 1, opposite strand ncRNA 62877 D11Mit254 - - 11 78.74 cM DNA segment, Chr 11, Massachusetts Institute of Technology 254 unknown 27511 B546P1S - - - DNA segment, B546P1S unknown 105245810 Gm41200 - - 14|14 predicted gene, 41200 ncRNA 73635 Mm.472804 NM_026865 ENSMUSG00000097487 Ptges3l 1110069E20Rik|1700113I22Rik - 11|11 D prostaglandin E synthase 3 like protein-coding 112267 Dps2 - - 12 60.94 cM delta power in slow-wave sleep 2 unknown 100862283 Gm21617 - - Y|Y predicted gene, 21617 protein-coding 52792 D9Bwg001e - - - DNA segment, Chr 9, Brigham & Women's Genetics 001 expressed unknown 100503046 Gm14963 - - 19|19 4.39 cM predicted gene 14963 ncRNA 630663 XM_006516824 Gm7040 - - 13 A1|13 predicted gene 7040 protein-coding 108168835 LOC108168835 - - 2 H2 60S ribosomal protein L29 pseudogene pseudo 76179 Mm.122538 NM_001033173 ENSMUSG00000063317 Usp31 6330567E21Rik|mKIAA1203 - 7|7 F2 ubiquitin specific peptidase 31 protein-coding 105245807 XR_874782 Gm41197 - - 14 D2|14 predicted gene, 41197 ncRNA 105245489 Gm40937 - - 13|13 predicted gene, 40937 ncRNA 100504394 Gm20203 - - 1 H6|1 96.92 cM placenta-specific gene 8 protein-like pseudo 110315 Trbv26 Gm16909|Tcrb-V3|Tcrb-V3.1 - 6 B1|6 19.33 cM T cell receptor beta, variable 26 other 228564 Mm.121514 NM_172673 ENSMUSG00000027238 Frmd5 1500032A09Rik|A930004K21Rik|R75430 - 2|2 E5 FERM domain containing 5 protein-coding 110973 Tpm4-ps Tm43/TM-4 - - tropomyosin 4, pseudogene pseudo 70223 Mm.29192 NM_027350 ENSMUSG00000024587 Nars 3010001M15Rik|AA960128|ASNRS|C78150 - 18|18 E1 asparaginyl-tRNA synthetase protein-coding 192196 Mm.276133 NM_138680 ENSMUSG00000029823 Luc7l2 4930471C18Rik|AA522013|AU015269|CGI59|Cgi74 - 6|6 B1 LUC7-like 2 (S. cerevisiae) protein-coding 68505 Mm.227361 NM_001081041 ENSMUSG00000024799 Vps51 1110014N23Rik|3110057M17Rik|AI837850|Ffr - 19|19 A VPS51 GARP complex subunit protein-coding 102634212 XR_866755 Gm31851 - - 2 F2|2 predicted gene, 31851 ncRNA 19332 Mm.37632 NM_011227 ENSMUSG00000031504 Rab20 AA536966|D8Ertd350e - 8 A1.1|8 5.73 cM RAB20, member RAS oncogene family protein-coding 102634309 Mm.416875 XR_880054 Gm11419 - - 11 B5|11 49.76 cM predicted gene 11419 ncRNA 381417 Mm.482295 NM_001085518 ENSMUSG00000079071 Gm14085 - - 2|2 E5 predicted gene 14085 protein-coding 12409 Mm.21454 NM_007621 ENSMUSG00000025150 Cbr2 MLCR - 11 E2|11 84.47 cM carbonyl reductase 2 protein-coding 76533 2010106G04Rik - - 17|17 RIKEN cDNA 2010106G04 gene protein-coding 100039460 Gm2250 - - X|X A3.2 RNA binding protein with multiple splicing 2 pseudogene pseudo 102636390 Gm28739 - - Y|Y predicted gene 28739 protein-coding 16020 Igh-7 - - 12|12 immunoglobulin heavy chain 7 (heavy chain of IgE) other 434310 Mm.334512 NR_033588 ENSMUSG00000066158 AY512931 - - 8|8 B1.1 cDNA sequence AY512931 ncRNA 109648 Mm.154796 NM_023456 ENSMUSG00000029819 Npy 0710005A05Rik - 6 B2.3|6 24.04 cM neuropeptide Y protein-coding 116768 Cocrb15 - - - cocaine related behavior 15 unknown 18789 Mm.255877 NM_011112 ENSMUSG00000021111 Papola Pap|PapIII|Plap - 12|12 E poly (A) polymerase alpha protein-coding 791077 NR_030439 ENSMUSG00000076456 Mir760 Mirn760|mir-760|mmu-mir-760 - 3 G1|3 microRNA 760 ncRNA 544749 Olfr779 Gm9792|MOR110-11P|Olfr779-ps1 - 10 D3|10 olfactory receptor 779 pseudo 108544 Ms13-14 Ms13-Ps14 - - minisatellite 13-14 detected by M13 phage probe other 102632527 Gm28554 - - Y|Y predicted gene 28554 protein-coding 110564 Lth1 Lth-1|Lvth-1 - - liver 30-40 thousand Mol. Wt. protein 1 protein-coding 110126 Rn18s-rs2 Rnr6 - - 18s RNA, related sequence 2 rRNA 692169 Mm.423001 Igkv15-103 Igk-V32 - 6 C1|6 31.18 cM immunoglobulin kappa chain variable 15-103 other 100034879 Abbp2 - - - A/J and C57BL/6 blood pressure 2 unknown 105243950 XR_865494 Gm39658 - - 1 C3|1 predicted gene, 39658 ncRNA 14714 Mm.358309 NM_008145 ENSMUSG00000015812 Gnrh1 Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg - 14|14 D1 gonadotropin releasing hormone 1 protein-coding 99633 Mm.9776 NM_001081298 ENSMUSG00000028184 Adgrl2 AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786 - 3|3 H3 adhesion G protein-coupled receptor L2 protein-coding 100035544 Ltsd5 - - 7 43.68 cM lung tumor shape-determining 5 unknown 102634120 XR_389145 Gm31781 - - 11 E2|11 predicted gene, 31781 ncRNA 212111 Mm.28308 NM_183144 ENSMUSG00000025477 Inpp5a - - 7|7 F4 inositol polyphosphate-5-phosphatase A protein-coding 102636456 Gm21832 - - Y|Y predicted gene, 21832 protein-coding 100042623 Gm3933 - - 1|1 F predicted gene 3933 pseudo 100417980 Gm18932 - - 11|11 A3.2 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene pseudo 108168050 XR_001780833 Gm46391 - - 13 A1|13 cytochrome c oxidase subunit 8A, mitochondrial pseudogene pseudo 105244108 XR_866100 Gm39781 - - 2 B|2 predicted gene, 39781 ncRNA 114291 Manh24 QTL-SH18.1 - - mandible shape 24 unknown 102640164 XR_387468 Gm36297 - - 1 G1|1 predicted gene, 36297 ncRNA 449561 NR_046303 AF357426 MBII-49 - 12 F1|12 snoRNA AF357426 snoRNA 330216 Mm.19719 NM_177878 ENSMUSG00000049285 Mblac1 - - 5|5 G2 metallo-beta-lactamase domain containing 1 protein-coding 671250 Gm16459 EG667641 - X|X F4 pyruvate kinase, muscle pseudogene pseudo 73344 Mm.391543 NM_028509 ENSMUSG00000040163 1700034J05Rik - - 6|6 G3 RIKEN cDNA 1700034J05 gene protein-coding 433129 Obox6-ps1 EG433129|Gm5496 - 17|17 E1.1 oocyte specific homeobox 6, pseudogene 1 pseudo 57255 Mm.86652 NM_020504 ENSMUSG00000008843 Cldn13 2500004B14Rik - 5|5 G2 claudin 13 protein-coding 116872 Mm.66015 NM_027548 ENSMUSG00000067001 Serpinb7 4631416M05Rik|megsin|ovalbumin - 1|1 E2.1 serine (or cysteine) peptidase inhibitor, clade B, member 7 protein-coding 76779 Mm.458921 NM_029738 ENSMUSG00000014232 Cluap1 2310030D15Rik|2610111M03Rik - 16|16 A1 clusterin associated protein 1 protein-coding 320613 Mm.446402 Spag17os B930086A06Rik - 3|3 F2.2 sperm associated antigen 17, opposite strand unknown 110120554 LOC110120554 - - - VISTA enhancer mm1471 biological-region 230622 Mm.291107 NM_001103199 ENSMUSG00000087194 Skint6 - - 4|4 D1 selection and upkeep of intraepithelial T cells 6 protein-coding 493131 Hivan1 - - 3 9.61 cM HIV-associated nephropathy 1 unknown 105396 Mm.22144 AW742864 - - - expressed sequence AW742864 unknown 77120 9030201C23Rik - - 3|3 RIKEN cDNA 9030201C23 gene protein-coding 227091 Mm.389120 XR_373402 Gm553 - - 1|1 C1.1 predicted gene 553 unknown 259063 Mm.377817 NM_147061 ENSMUSG00000043948 Olfr691 MOR31-6 - 7|7 E3 olfactory receptor 691 protein-coding 28109 Mm.196210 NM_026579 ENSMUSG00000020255 D10Wsu102e AI747614|C430041I18Rik - 10 C1|10 41.16 cM DNA segment, Chr 10, Wayne State University 102, expressed protein-coding 72293 Mm.45506 NM_028186 ENSMUSG00000021567 Nkd2 2210403L10Rik|AW212591|mNkd2 - 13|13 C1 naked cuticle 2 protein-coding 102639064 XR_377957 Gm35467 - - 6 E3|6 predicted gene, 35467 ncRNA 100417999 Gm18939 - - 12|12 B1 ubiquitin specific peptidase 9, X chromosome pseudogene pseudo 93841 Mm.390180 NM_033607 ENSMUSG00000035337 Uchl4 - - 9 C|9 34.58 cM ubiquitin carboxyl-terminal esterase L4 protein-coding 73002 2900076A13Rik - - 2|2 RIKEN cDNA 2900076A13 gene protein-coding 108168059 XR_001780848 Gm46397 - - 13 D1|13 predicted gene, 46397 ncRNA 108167510 Gm46026 - - 7 C|7 predicted gene, 46026 pseudo 102637446 XR_388821 Gm34252 - - 11 B4|11 predicted gene, 34252 ncRNA 619333 Mm.133825 F930026P19Rik - - - RIKEN cDNA F930026P19 gene protein-coding 100036246 Vtbt6 - - 9 18.24 cM vertebral trabecular bone trait 6 unknown 544808 XR_880153 AA623943 - - 11|11 D expressed sequence AA623943 protein-coding 108167351 XR_872936 Gm45956 - - 12 E|12 predicted gene, 45956 ncRNA 20493 Mm.486361 NM_011387 ENSMUSG00000021135 Slc10a1 Ntcp - 12 C3-D1|12 37.21 cM solute carrier family 10 (sodium/bile acid cotransporter family), member 1 protein-coding 100416289 Gm18020 - - 16|16 C4 predicted gene, 18020 pseudo 640992 Gm7316 EG640992 - 14|14 C1 predicted gene 7316 pseudo 102633069 XR_374878 Gm30985 - - 2 E4|2 predicted gene, 30985 ncRNA 102635505 XR_374800 Gm32824 - - 2 E1|2 predicted gene, 32824 ncRNA 102638062 Gm34715 - - X|X predicted gene, 34715 ncRNA 12671 Mm.342315 NM_033269 ENSMUSG00000046159 Chrm3 Chrm-3|M3|M3R - 13 A1|13 3.72 cM cholinergic receptor, muscarinic 3, cardiac protein-coding 319955 Mm.318310 NM_001081221 ENSMUSG00000054051 Ercc6 4732403I04|C130058G22Rik|CSB - 14|14 B excision repair cross-complementing rodent repair deficiency, complementation group 6 protein-coding 101056163 LOC101056163 - - 8 B3.3 14-3-3 protein sigma-like pseudo 110991 Adh1-ps Adh-1ps - - alcohol dehydrogenase 1 (class I), pseudogene pseudo 14731 Mm.5903 NM_010331 ENSMUSG00000022561 Gpaa1 C80044|mGAA1 - 15|15 D3 GPI anchor attachment protein 1 protein-coding 21199 T(5;11)542Ct T542Ct - - reciprocal translocation, Chr 5 and 11, Cattanach 542 other 108075 Mm.272251 NM_175641 ENSMUSG00000040488 Ltbp4 2310046A13Rik - 7|7 A3 latent transforming growth factor beta binding protein 4 protein-coding 108308 Mmv10 Mmv-10 - - MCF endogenous virus 10 other 72861 NM_183093 2900005I04Rik - - X|X C1 RIKEN cDNA 2900005I04 gene unknown 791351 Mm.86343 C630004M23Rik - - - RIKEN cDNA C630004M23 gene unknown 100036139 Hstx1 - - - hybrid sterility, X Chromosome QTL 1 unknown 108175 Tk-ps2 - - - thymidine kinase pseudogene 2 pseudo 106672 Mm.61488 NM_001002895 ENSMUSG00000062753 AI413582 AI854251|Smim29 - 17|17 A3.3 expressed sequence AI413582 protein-coding 105246770 XR_878709 Gm42009 - - 5 F|5 predicted gene, 42009 ncRNA 96999 Mm.441763 C80425 - - - expressed sequence C80425 unknown 21185 T(4;6)48Ad T48Ad - - reciprocal translocation, Chr 4 and 6, Adler 48 other 629869 Mm.436242 Ighv1-17 EG629869|Gm7013 - 12|12 F2 immunoglobulin heavy variable 1-17 pseudo 21960 Mm.44701 NM_022312 ENSMUSG00000015829 Tnr J1-tenascin|TN-R|janusin|restrictin - 1|1 H1 tenascin R protein-coding 666215 Gm13127 - - 4|4 E1 microspherule protein 1 pseudogene pseudo 100416298 Gm18023 - - X|X E3 ring finger protein 2 pseudogene pseudo 381535 NM_001085519 ENSMUSG00000037028 Gm12800 - - 4|4 C6 predicted gene 12800 unknown 404705 Prkcz2 Gm1839|Prkczl - 7|7 A3 protein kinase C, zeta 2 pseudo 105246184 Gm41518 - - 17|17 predicted gene, 41518 ncRNA 229714 Mm.73666 NM_175470 ENSMUSG00000046793 Gpr61 - - 3|3 F2.3 G protein-coupled receptor 61 protein-coding 71670 Mm.29735 NM_027857 ENSMUSG00000024866 Acy3 0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1 - 19|19 A aspartoacylase (aminoacylase) 3 protein-coding 327939 Mm.406525 XR_388712 ENSMUSG00000084805 Gm12273 D630015H07 - 11|11 B2 predicted gene 12273 ncRNA 102015 XR_001778641 AI225912 - - 8 D3|8 expressed sequence AI225912 ncRNA 258489 Mm.377531 NM_146496 ENSMUSG00000096068 Olfr486 MOR204-19 - 7|7 E3 olfactory receptor 486 protein-coding 100416688 Gm18195 - - 7|7 A3 zinc finger protein 787 pseudogene pseudo 14124 fc - - - flecking unknown 100040814 Amd-ps4 - - 4|4 B1 S-adenosylmethionine decarboxylase, pseudogene 4 pseudo 14883 Gtayu6 - - - gene trap AYU 6 unknown 102641276 LOC102641276 - - - guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 protein-coding 319191 Mm.14767 NM_178182 ENSMUSG00000071516 Hist1h2ai H2a-291A - 13|13 A3.1 histone cluster 1, H2ai protein-coding 100035714 Bdln8 - - - body length 8 unknown 223672 Mm.243758 NM_173786 ENSMUSG00000057346 Apol9a - - 15|15 D3 apolipoprotein L 9a protein-coding 319466 NR_131037 ENSMUSG00000114189 9330199G10Rik - - 13|13 A2 RIKEN cDNA 9330199G10 gene ncRNA 56321 Mm.257482 NM_019816 ENSMUSG00000018697 Aatf 4933415H02Rik|5830465M17Rik|Che-1|Trb - 11|11 C apoptosis antagonizing transcription factor protein-coding 14251 Mm.2931 NM_008027 ENSMUSG00000059714 Flot1 reggie-2 - 17|17 B1 flotillin 1 protein-coding 19892 Mm.131708 NM_029987 ENSMUSG00000028174 Rpe65 65kDa|A930029L06Rik|LCA2|Mord1|RP20|rd12 - 3 H4|3 82.52 cM retinal pigment epithelium 65 protein-coding 320265 Mm.489890 NM_182808 ENSMUSG00000059187 Fam19a1 C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1 - 6|6 D3 family with sequence similarity 19, member A1 protein-coding 258326 Mm.223021 NM_146329 ENSMUSG00000049797 Olfr642 MOR13-6 - 7|7 E3 olfactory receptor 642 protein-coding 27421 Mm.63514 NM_018795 ENSMUSG00000030834 Abcc6 Abcc1b|DCC|Dyscalc1|Mrp6|dyscalc - 7 29.64 cM|7 B3 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 protein-coding 27465 8S - - - DNA segment, 8S unknown 666118 NM_001081410 Olfr335-ps MOR137-2|Olfr335 - 2|2 B olfactory receptor 335, pseudogene pseudo 105242674 XR_869158 Gm38825 Gm44051 - 6 C1|6 predicted gene, 38825 ncRNA 55963 Mm.6379 NM_018861 ENSMUSG00000020142 Slc1a4 ASCT-1|ASCT1|AW045657|SATT - 11 A3.1|11 12.97 cM solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 protein-coding 64138 Mm.156919 NM_022325 ENSMUSG00000016256 Ctsz AI787083|AU019819|CTSX|D2Wsu143e - 2 H4|2 97.94 cM cathepsin Z protein-coding 75180 Mm.179335 NM_029198 ENSMUSG00000028642 Tmem269 4930538K18Rik - 4|4 D2.1 transmembrane protein 269 protein-coding 74307 Mm.48791 NM_001177347 ENSMUSG00000090840 1700092M07Rik Tex54 - 19|19 A RIKEN cDNA 1700092M07 gene protein-coding 72097 Mm.142607 NM_028096 ENSMUSG00000026090 2010300C02Rik - - 1|1 B RIKEN cDNA 2010300C02 gene protein-coding 102638245 XR_385146 Gm34854 - - 17 A1|17 predicted gene, 34854 ncRNA 13047 Mm.320317 NM_009986 ENSMUSG00000029705 Cux1 CDP|Cutl1|Cux|Cux-1 - 5 G2|5 75.96 cM cut-like homeobox 1 protein-coding 62329 D6Mit175 - - 6 30.11 cM DNA segment, Chr 6, Massachusetts Institute of Technology 175 unknown 100041116 Gm3148 - - 6 A1|6 high mobility group box 2 pseudogene pseudo 62177 D14Mit97 - - 14 62.2 cM DNA segment, Chr 14, Massachusetts Institute of Technology 97 unknown 105246768 XR_878704 Gm42007 - - 5 F|5 predicted gene, 42007 ncRNA 102638207 XR_389061 Gm34823 - - 11 E1|11 predicted gene, 34823 ncRNA 667551 Mm.484969 NM_001166754 ENSMUSG00000095619 Vmn1r157 100043559|EG667551|Gm4517|Gm8699|Vmn1r109 - 7|7 A3 vomeronasal 1 receptor 157 protein-coding 20851 Mm.34064 NM_011489 ENSMUSG00000020919 Stat5b - - 11 D|11 63.63 cM signal transducer and activator of transcription 5B protein-coding 100502678 Gm12187 - - 11 B1.2|11 29.07 cM predicted gene 12187 pseudo 102639889 Gm29593 - - 19|19 predicted gene 29593 ncRNA 19791 NR_003278 Rn18s - - - 18S ribosomal RNA rRNA 69452 1700027M17Rik - - 14|14 RIKEN cDNA 1700027M17 gene protein-coding 277668 Mm.475072 NM_001126325 ENSMUSG00000078513 Gm13088 - - 4|4 E1 predicted gene 13088 protein-coding 100042548 Mm.419939 XR_001779344 Gm3898 - - 9 A5.1|9 predicted gene 3898 ncRNA 213522 Mm.333396 NM_198604 ENSMUSG00000038167 Plekhg6 BC026778|Gm155 - 6|6 F3 pleckstrin homology domain containing, family G (with RhoGef domain) member 6 protein-coding 61659 D7Mit267 - - 7 17.09 cM DNA segment, Chr 7, Massachusetts Institute of Technology 267 unknown 492851 Sluc16 - - - susceptibility to lung cancer 16 unknown 672931 Gm9584 - - 16|16 C1.3 geminin pseudogene pseudo 23813 B430B21S - - - DNA segment B430-B-21-S unknown 102637209 XR_381922 Gm34081 - - 12 F1|12 predicted gene, 34081 ncRNA 103514 BB165335 - - - expressed sequence BB165335 protein-coding 52732 D2Wsu34e - - - DNA segment, Chr 2, Wayne State University 34, expressed unknown 102632460 XR_384244 Gm30527 - - 15 E1|15 predicted gene, 30527 ncRNA 105244160 XR_879830 Gm39820 - - 11 B1.3|11 predicted gene, 39820 ncRNA 100035974 Etax3 - - 2 17.24 cM ethanol induced ataxia 3 unknown 62675 D15Mit159 - - 15 41.96 cM DNA segment, Chr 15, Massachusetts Institute of Technology 159 unknown 110265 Mm.26713 NM_026322 ENSMUSG00000054733 Msra 2310045J23Rik|6530413P12Rik|MSR-A - 14 D1|14 33.36 cM methionine sulfoxide reductase A protein-coding 53414 Mm.472101 NM_016859 ENSMUSG00000023988 Bysl Bys|Enp1 - 17 C|17 23.63 cM bystin-like protein-coding 61515 D8Mit137 - - 8 53.04 cM DNA segment, Chr 8, Massachusetts Institute of Technology 137 unknown 492945 Alaa2 - - 9 21.42 cM alopecia areata 2 unknown 21038 T(10;13)199H T199H - - reciprocal translocation, Chr 10 and 13, Harwell 199 other 619324 Mm.61488 NM_001033818 C130040N14Rik - - 17|17 A3.3 RIKEN cDNA C130040N14 gene protein-coding 493094 Chol10 Cq4 - - cholesterol 10 unknown 100040182 Rpl30-ps7 Gm2648 - 10 B5.3|10 ribosomal protein L30, pseudogene 7 pseudo 66660 Mm.22379 NM_025690 ENSMUSG00000032212 Sltm 5730455C01Rik|5730555F13Rik|9130215G10Rik|Met - 9|9 D SAFB-like, transcription modulator protein-coding 110991260 LOC110991260 - - 11 B5 solute carrier family 6 member 4 gene promoter biological-region 100312538 Vmn1r-ps109 Gm11305 - 13|13 A3.1 vomeronasal 1 receptor, pseudogene 109 pseudo 270091 Mm.212709 NM_001033371 ENSMUSG00000054320 Lrrc36 BC036564 - 8|8 D3 leucine rich repeat containing 36 protein-coding 102638931 Mm.421405 XR_375192 Gm35374 - - 2 H2|2 predicted gene, 35374 ncRNA 73561 Mm.399360 1700097M23Rik - - 6|6 C3 RIKEN cDNA 1700097M23 gene protein-coding 780936 Ighv8-7 - - 12|12 F2 immunoglobulin heavy variable V8-7 pseudo 61662 D7Mit255 - - 7 68.16 cM DNA segment, Chr 7, Massachusetts Institute of Technology 255 unknown 83677 Mm.450552 Usmg2 - - - upregulated during skeletal muscle growth 2 unknown 100039166 Gm14417 - - 2|2 H4 predicted gene 14417 protein-coding 633360 LOC633360 - - 8|8 uncharacterized LOC633360 protein-coding 321016 Gm10817 8030455F02Rik - 19|19 predicted gene 10817 unknown 108447 Tcra-V20 V[a]A10 - - T cell receptor alpha, variable 20 other 116957 Trbv4c1 - - 17 20.67 cM T cell receptor beta variable 4, control 1 unknown 27501 B9L14S - - - DNA segment, B9L14S unknown 72103 Mm.31770 NM_024251 ENSMUSG00000030051 Aplf 2010301N04Rik|AI452191 - 6|6 D1 aprataxin and PNKP like factor protein-coding 111508 Pmv2 Pmv-2 - - polytropic murine leukemia virus 2 other 26894 Mm.244536 NM_012003 ENSMUSG00000030127 Cops7a D6Ertd35e|SGN7a - 6 F2|6 59.17 cM COP9 signalosome subunit 7A protein-coding 257937 Olfr1192-ps1 MOR225-11 - 2|2 D olfactory receptor 1192, pseudogene 1 pseudo 338348 Mm.475130 NM_177384 ENSMUSG00000039021 Ttc16 1200002K10Rik - 2|2 B tetratricopeptide repeat domain 16 protein-coding 105244402 XM_017319400 LOC105244402 - - 2 H4 zinc finger protein 239-like protein-coding 105246919 XR_880432 Gm42115 - - 5 E2|5 predicted gene, 42115 ncRNA 111727 Iapt15 - - - intracisternal A particle, tumor specific 15 other 53890 Mm.29594 NM_016926 ENSMUSG00000018974 Sart3 AU045857|mKIAA0156 - 5|5 F squamous cell carcinoma antigen recognized by T cells 3 protein-coding 105246109 XR_876060 Gm41451 - - 16 B3|16 predicted gene, 41451 ncRNA 258595 Mm.377585 NM_146602 ENSMUSG00000059087 Olfr698 MOR283-3 - 7|7 E3 olfactory receptor 698 protein-coding 61709 D5Mit318 - - 5 56.03 cM DNA segment, Chr 5, Massachusetts Institute of Technology 318 unknown 21987 Mm.439966 NM_009413 ENSMUSG00000000296 Tpd52l1 D53 - 10|10 A4 tumor protein D52-like 1 protein-coding 67375 Mm.26928 NM_133686 ENSMUSG00000030674 Qprt 2410027J01Rik|AI647766|QPRTase - 7|7 F3 quinolinate phosphoribosyltransferase protein-coding 105244086 XM_011238999 Gm37416 - - 2 A2|2 predicted gene, 37416 protein-coding 62028 D1Mit526 - - 1 11.38 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 526 unknown 100415957 Gm17838 - - 7|7 B5 nucleolin pseudogene pseudo 22171 Mm.268395 NM_021288 ENSMUSG00000025747 Tyms Ts - 5 B1|5 15.81 cM thymidylate synthase protein-coding 75847 Mm.261764 NM_178629 ENSMUSG00000043153 Ispd 4930579E17Rik|AV040780 - 12|12 A3 isoprenoid synthase domain containing protein-coding 56025 D5Buc50 - - - DNA segment, Chr 5, Bucan 50 unknown 666655 Gm8216 EG666655 - X|X F2 COMM domain containing 2 pseudogene pseudo 791306 Mm.491571 Gm9915 - - 1|1 predicted gene 9915 ncRNA 105247242 Gm42374 - - 7|7 predicted gene, 42374 ncRNA 319752 Mm.294476 NR_045727 B230209E15Rik - - 7|7 C RIKEN cDNA B230209E15 gene ncRNA 102466796 NR_106020 ENSMUSG00000099330 Mir7053 Gm27503|mmu-mir-7053 - 7|7 B3 microRNA 7053 ncRNA 12790 Mm.214224 NM_009918 ENSMUSG00000026114 Cnga3 CNG3 - 1|1 B cyclic nucleotide gated channel alpha 3 protein-coding 171183 Mm.377164 NM_134165 ENSMUSG00000115467 Vmn1r37 V1rc10 - 6|6 C1 vomeronasal 1 receptor 37 protein-coding 102632619 Gm30646 - - 7 B1|7 predicted gene, 30646 pseudo 381384 Mm.259809 NR_046014 ENSMUSG00000051986 A530006G24Rik Gm1003 - 2|2 G2 RIKEN cDNA A530006G24 gene ncRNA 100043842 NM_001310657 ENSMUSG00000099729 Scgb2b11 Abpbg11|Gm4687 - 7 B1|7 secretoglobin, family 2B, member 11 protein-coding 13656 Mm.44137 NM_020596 ENSMUSG00000071341 Egr4 NGF1-C|NGFI-C|NGFIC|pAT133 - 6 C3|6 37.48 cM early growth response 4 protein-coding 666870 Gm8338 EG666870 - 1|1 E2.3 Acidic ribosomal phosphoprotein P0 pseudogene pseudo 102640094 Gm36247 - - 8 B3.2|8 predicted gene, 36247 pseudo 382423 Mm.431239 NM_001033474 ENSMUSG00000074748 Atxn7l3b 4921506J03Rik|6230409E21Rik|AI315132 - 10|10 D2 ataxin 7-like 3B protein-coding 383103 Mm.325732 NM_001013778 ENSMUSG00000050908 Tvp23a Fam18a - 16|16 A1 trans-golgi network vesicle protein 23A protein-coding 102638692 XR_382540 Gm35193 - - 13 B2|13 predicted gene, 35193 ncRNA 258836 Mm.331617 NM_146839 ENSMUSG00000051593 Olfr272 MOR262-7 - 4|4 B2 olfactory receptor 272 protein-coding 666747 Mm.425592 NM_001170884 ENSMUSG00000079162 Trim43b EG666747|Gm8269 - 9|9 E3.1 tripartite motif-containing 43B protein-coding 100416293 Gm14615 - - X|X A4 zinc finger protein 7 pseudogene pseudo 633238 Gm7107 EG633238 - 14|14 C1 cyclin-dependent kinase 8 pseudogene pseudo 258160 Mm.377366 NM_001011857 ENSMUSG00000047794 Olfr685 MOR37-1 - 7|7 E3 olfactory receptor 685 protein-coding 625631 Bloc1s2-ps Bloc1s2b|Gm13540 - 2|2 C1.1 biogenesis of lysosomal organelles complex-1, subunit 2, pseudogene pseudo 214459 Mm.209491 NM_153118 ENSMUSG00000039735 Fnbp1l 2610318I01Rik|AW548221|TOCA1|toca-1 - 3|3 G1 formin binding protein 1-like protein-coding 433653 NM_001270430 ENSMUSG00000091721 Gimd1 EG433653|Gm5549 - 3|3 G3 GIMAP family P-loop NTPase domain containing 1 protein-coding 20908 Mm.272264 NM_011502 ENSMUSG00000041488 Stx3 Syn-3 - 19|19 A syntaxin 3 protein-coding 16057 Mm.342177 Igh-V3609N - - - immunoglobulin heavy chain (V3609N non-productive) other 19119 Mm.325769 NM_008933 ENSMUSG00000038015 Prm2 AI528784|Prm-2 - 16 A1|16 5.84 cM protamine 2 protein-coding 111539 Pmv19 Pmv-19 - - polytropic murine leukemia virus 19 other 433791 Mm.276881 NM_001085522 ENSMUSG00000070605 Zfp992 Gm13251 - 4|4 E1 zinc finger protein 992 protein-coding 404308 Mm.484787 NM_213721 ENSMUSG00000080990 Olfr118 MOR263-13 - 17|17 B1 olfactory receptor 118 protein-coding 320262 Mm.425464 NM_177118 A830073O21Rik - - 7|7 D2 RIKEN cDNA A830073O21 gene unknown 74325 Mm.290026 NM_028870 ENSMUSG00000047547 Cltb 2310046E19Rik|lcb - 13|13 B1 clathrin, light polypeptide (Lcb) protein-coding 20848 Mm.249934 NM_011486 ENSMUSG00000004040 Stat3 1110034C02Rik|AW109958|Aprf - 11 D|11 63.82 cM signal transducer and activator of transcription 3 protein-coding 630282 LOC630282 IGHV175|VHQ52.a19.61 - 12|12 immunoglobulin heavy chain V region other 28015 Mm.21094 NM_178602 ENSMUSG00000032199 Polr2m AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185 - 9 D|9 39.85 cM polymerase (RNA) II (DNA directed) polypeptide M protein-coding 493119 Bsbob - - - BSB obesity unknown 85131 D9Mit139 - - 9 23.41 cM DNA segment, Chr 9, Massachusetts Institute of Technology 139 unknown 101513 Mm.53259 NM_028308 ENSMUSG00000025147 Mob2 1110017M21Rik|2700078K21Rik|AI256456|Mmh - 7|7 F5 MOB kinase activator 2 protein-coding 102637310 XR_385133 Gm34155 - - 17 A1|17 predicted gene, 34155 ncRNA 60760 D2Mit56 - - 2 41.97 cM DNA segment, Chr 2, Massachusetts Institute of Technology 56 unknown 100035653 Sdtq6 L8 - - skull development traits QTL 6 unknown 110163 Tctex8 Tctex-8 - - t-complex testis-expressed 8 protein-coding 280408 Mm.41416 NM_001029938 ENSMUSG00000038195 Rilp AI835553|Gm857 - 11|11 B5 Rab interacting lysosomal protein protein-coding 245704 Aliq4 - - 6 25.82 cM acute lung injury QTL 4 unknown 381845 Mm.439896 NM_029809 ENSMUSG00000033967 Rnf225 2310014L17Rik|AV237412|C77118 - 7|7 A1 ring finger protein 225 protein-coding 11535 Mm.1408 NM_009627 ENSMUSG00000030790 Adm AM - 7 E3|7 57.7 cM adrenomedullin protein-coding 105246940 XR_880489 Gm42134 - - 5 E4|5 predicted gene, 42134 ncRNA 208677 Mm.294693 NM_145365 ENSMUSG00000035041 Creb3l3 BC010786|CREB-H|D10Bur1e - 10 C1|10 39.72 cM cAMP responsive element binding protein 3-like 3 protein-coding 66089 Mm.288183 NM_025346 ENSMUSG00000001054 Rmnd5b 0610039K22Rik|Gid2 - 11|11 B1.3 required for meiotic nuclear division 5 homolog B protein-coding 110120562 LOC110120562 - - - VISTA enhancer mm1538 biological-region 102465554 NR_105885 ENSMUSG00000105908 Mir6920 mmu-mir-6920 - 11|11 B1.3 microRNA 6920 ncRNA 78931 Mm.160155 NR_038051 4930546C10Rik - - 18|18 E2 RIKEN cDNA 4930546C10 gene ncRNA 62464 D13Mit307 - - 13 13.71 cM DNA Segment, Chr 13 Massachusetts Institute of Technology 307 unknown 100418232 Gm19088 - - 5|5 A3 complement component 1, q subcomponent binding protein pseudogene pseudo 100504308 Mm.412960 XR_377364 Gm15473 - - 6 A2|6 7.67 cM predicted gene 15473 ncRNA 102632699 Gm30702 - - 18|18 predicted gene, 30702 ncRNA 108168388 XR_001782480 Gm46630 - - 18 A2|18 predicted gene, 46630 ncRNA 108167513 XR_001778377 Gm46027 - - 7 E3|7 predicted gene, 46027 ncRNA 212124 Mm.425507 NM_177212 ENSMUSG00000049571 Cfap46 9330101J02Rik|E030019B06Rik|Gm170|Ttc40 - 7|7 F4 cilia and flagella associated protein 46 protein-coding 28159 DYzEms15 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 15 unknown 105244515 XR_867517 Gm40109 - - 3 F2.2|3 predicted gene, 40109 ncRNA 102642842 XR_873569 Gm38639 - - 13 B3|13 predicted gene, 38639 ncRNA 102638818 XR_866698 Gm26697 - - 2 F1|2 predicted gene, 26697 ncRNA 102639027 Gm28871 - - Y|Y predicted gene 28871 pseudo 70237 Mm.440847 NM_198161 ENSMUSG00000072964 Bhlhb9 2700087I09Rik - X|X F1 basic helix-loop-helix domain containing, class B9 protein-coding 319183 Mm.371766 NM_178198 ENSMUSG00000069300 Hist1h2bj - - 13|13 A3.1 histone cluster 1, H2bj protein-coding 21097 T(15;19)6Gso T6Gso - - reciprocal translocation, Chr 15 and 19, Generoso 6 other 399579 6720462K09Rik - - - RIKEN cDNA 6720462K09 gene protein-coding 668366 Gm9130 EG668366 - 14|14 D1 predicted gene 9130 pseudo 100534374 Gm21046 - - 18|18 E2 ribosomal protein S6 kinase, polypeptide 1 pseudogene pseudo 108616 Iap5ra13 - - - intracisternal A-type particle, U5 region, SINE repeat a-13 other 105242795 Gm38909 - - 6|6 predicted gene, 38909 ncRNA 13162 Mm.41993 NM_010020 ENSMUSG00000021609 Slc6a3 DAT|Dat1 - 13 C1|13 40.1 cM solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 protein-coding 102631538 Gm29850 - - 14|14 predicted gene, 29850 protein-coding 102636095 XR_867015 Gm33262 - - 2 H3|2 predicted gene, 33262 ncRNA 109279939 LOC109279939 Mm311 - - VISTA enhancer mm311 biological-region 22343 Mm.235300 NM_011699 ENSMUSG00000027162 Lin7c 9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3 - 2 E3|2 56.65 cM lin-7 homolog C (C. elegans) protein-coding 384862 Gm5356 EG384862 - 8|8 C3 proteasome (prosome, macropain) subunit, beta type 3 pseudogene pseudo 433053 LOC433053 - - 16|16 Ig lambda1 chain c region other 26561 Mm.29373 NM_011985 ENSMUSG00000029061 Mmp23 CA-MMP - 4|4 E2 matrix metallopeptidase 23 protein-coding 619808 Mm.443250 XR_105177 1700010L04Rik - - 7|7 D3 RIKEN cDNA 1700010L04 gene unknown 665634 Gm11278 - - 13|13 A3.1 predicted gene 11278 ncRNA 13313 Del(5)43H Del43H - - deletion, Chr 5, Harwell 43 other 667464 Mm.480253 NM_001166749 ENSMUSG00000095273 Vmn1r142 EG667464|Gm8647 - 7|7 A3 vomeronasal 1 receptor 142 protein-coding 58882 AI324858 - - - EST AI324858 unknown 102634681 XM_006500524 Gm32211 - - 2 H1|2 predicted gene, 32211 protein-coding 100034866 Scc12 - - 7 70.15 cM colon tumor susceptibility 12 unknown 18379 Mm.335311 NM_001111286 ENSMUSG00000066463 Omt2a OM2a - 9 E1|9 43.65 cM oocyte maturation, alpha protein-coding 108168899 XR_001783984 Gm46824 - - 3 G2|3 predicted gene, 46824 ncRNA 69131 Mm.260516 NM_026952 ENSMUSG00000003119 Cdk12 1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc - 11 D|11 61.75 cM cyclin-dependent kinase 12 protein-coding 71566 Mm.280560 NM_133733 ENSMUSG00000032024 Clmp 9030425E11Rik|ACAM|ASP5|AW557819 - 9|9 A5.1 CXADR-like membrane protein protein-coding 108564 Iapls2-8 - - - intracisternal A particle, lymphocyte specific 2-8 other 18619 Mm.475097 NM_001002927 ENSMUSG00000045573 Penk AI326464|ENK|PPA|Penk1 - 4 A1|4 2.31 cM preproenkephalin protein-coding 105244576 XR_867723 Gm40169 - - 3 H2|3 predicted gene, 40169 ncRNA 433365 Mm.229362 NM_001008426 ENSMUSG00000043282 Teddm1b EG433365|Gm5531 - 1|1 G3 transmembrane epididymal protein 1B protein-coding 73137 Mm.29889 NM_028447 ENSMUSG00000024594 Prrc1 1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik - 18|18 D3 proline-rich coiled-coil 1 protein-coding 56567 14c5T7 - - - DNA segment, 14c5T7 unknown 100042211 Gm3724 - - 5|5 A3 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2 pseudogene pseudo 100043207 Mm.275426 XM_011240373 ENSMUSG00000070360 Amy2a1 Amy2-1|mAmy2-6 - 3 F3|3 49.35 cM amylase 2a1 protein-coding 666186 XR_874542 Gm7970 EG666186 - 14|14 B predicted gene 7970 protein-coding 623488 Ppp1r2-ps4 EG623488|Gm6435 - 9|9 C protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 4 pseudo 102631762 Mm.462441 XR_390818 Gm30019 - - 4 D2.3|4 predicted gene, 30019 ncRNA 105245092 XR_871411 Gm40590 - - 10 A1|10 predicted gene, 40590 ncRNA 497655 Gm11451 EG497655 - 2|2 H2 protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a pseudogene pseudo 100035539 Lbm10 - - 14 36.32 cM lean body mass 10 unknown 110529 Prdx2-rs5 - - - peroxiredoxin 2, related sequence 5 protein-coding 99218 Mm.442335 AU022702 - - - expressed sequence AU022702 unknown 12562 Mm.21767 NM_009868 ENSMUSG00000031871 Cdh5 7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec - 8 D3|8 53.04 cM cadherin 5 protein-coding 102632092 XR_374637 Gm30257 - - 2 C3|2 predicted gene, 30257 ncRNA 14874 Mm.29652 NM_010363 ENSMUSG00000021033 Gstz1 MAAI - 12|12 D2 glutathione transferase zeta 1 (maleylacetoacetate isomerase) protein-coding 668489 Mm.158324 NR_027860 Gm9199 EG668489 - 14|14 D3 glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 102631569 XR_870030 Gm29872 - - 7 F3|7 predicted gene, 29872 ncRNA 320452 Mm.150294 NM_177161 ENSMUSG00000051048 P4ha3 D930031A02Rik - 7|7 E2 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III protein-coding 110120518 LOC110120518 - - - VISTA enhancer mm1496 biological-region 108168858 LOC108168858 - - 3 A1 protein tyrosine phosphatase type IVA 1 pseudogene pseudo 16254 In(15)35Rk In35Rk - - inversion, Chr 15, Roderick 35 other 109280077 LOC109280077 Mm751 - - VISTA enhancer mm751 biological-region 78128 Mm.229357 NM_153115 ENSMUSG00000079842 Spag11a 9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11 - 8|8 A1.3 sperm associated antigen 11A protein-coding 66291 Mm.28071 NM_025471 ENSMUSG00000028295 Smim8 1810030N24Rik|2810406B13Rik - 4|4 A5 small integral membrane protein 8 protein-coding 62824 D13Mit244 - - 13 21.63 cM DNA segment, Chr 13, Massachusetts Institute of Technology 244 unknown 102637705 NM_001347049 ENSMUSG00000093626 Ly6l Gm20654 - 15 D3|15 34.37 cM lymphocyte antigen 6 complex, locus L protein-coding 102639541 Gm35832 - - 8|8 predicted gene, 35832 ncRNA 105245965 XR_875381 ENSMUSG00000115711 Gm41336 - - 15 D1|15 predicted gene, 41336 ncRNA 259144 Mm.377865 NM_001011528 ENSMUSG00000090631 Olfr456 MOR257-7P - 6|6 B2.1 olfactory receptor 456 protein-coding 77285 9430037O13Rik - - - RIKEN cDNA 9430037O13 gene protein-coding 75604 Mm.24400 NM_029360 ENSMUSG00000018919 Tm4sf5 2010003F10Rik|AI323987 - 11|11 B3 transmembrane 4 superfamily member 5 protein-coding 12819 Mm.233547 NM_009928 ENSMUSG00000028339 Col15a1 - - 4|4 B1 collagen, type XV, alpha 1 protein-coding 100417955 Gm18919 - - X|X C3 thrombospondin, type I, domain containing 7B pseudogene pseudo 110130 Cxv1 Cxv-1 - - control of xenotropic virus 1 protein-coding 22360 Mm.4766 NM_009513 ENSMUSG00000048978 Nrsn1 Neurensin-1|Neuro-p24|Vmp - 13|13 A3.1 neurensin 1 protein-coding 102631797 Gm30043 - - 3|3 predicted gene, 30043 ncRNA 102636799 XR_378532 Gm33771 - - 7 F3|7 predicted gene, 33771 ncRNA 102643040 XR_869413 Gm38651 - - 6 F1|6 predicted gene, 38651 ncRNA 102640393 XR_867072 Gm36462 - - 2 H3|2 predicted gene, 36462 ncRNA 258202 Olfr1376-ps1 MOR129-4P|Olfr226-ps1 - 11|11 B1.3 olfactory receptor 1376, pseudogene 1 pseudo 102635528 XR_384174 Gm32839 - - 15 D3|15 predicted gene, 32839 ncRNA 102640443 Mm.413101 XR_377353 ENSMUSG00000108025 Gm36503 Gm43998 - 6 A1-A2|6 predicted gene, 36503 ncRNA 109627 Ins3-ps Ins-3 - - insulin III, pseudogene pseudo 76851 5730575G16Rik - - - RIKEN cDNA 5730575G16 gene protein-coding 100416728 Gm18217 - - 18|18 D3 ferritin heavy chain 1 pseudogene pseudo 665825 Gm7809 EG665825 - 17|17 A3.3 predicted gene 7809 pseudo 383709 Mm.244520 NM_001033477 Gm1322 - - 2|2 C1.3 predicted gene 1322 protein-coding 110304 Mm.307061 NM_080438 ENSMUSG00000038257 Glra3 - - 8 B2|8 29.69 cM glycine receptor, alpha 3 subunit protein-coding 74619 Mm.399170 4930432B10Rik - - 10|10 RIKEN cDNA 4930432B10 gene protein-coding 19217 Mm.4630 NM_008964 ENSMUSG00000037759 Ptger2 EP2|Ptgerep2 - 14 C1|14 22.68 cM prostaglandin E receptor 2 (subtype EP2) protein-coding 102634719 XR_375685 Gm32237 - - 3 D|3 predicted gene, 32237 ncRNA 61843 D1Mit425 - - 1 67.71 cM DNA segment, Chr 1, Massachusetts Institute of Technology 425 unknown 100035102 Manln12 - - 11 71.83 cM mandible length 12 unknown 54396 Mm.458517 NM_019440 ENSMUSG00000069874 Irgm2 AI481100|GTPI|Ifggd2|Iigp2 - 11|11 B1.3 immunity-related GTPase family M member 2 protein-coding 100042604 Gm13453 - - 2|2 B ATPase, H+ transporting, lysosomal (vacuolar proton pump) pseudo 104097 Pol27 Pol-27 - - viral polymerase 27 protein-coding 100035724 Hdlq3 - - - HDL QTL 3 unknown 235503 Eef1a1-ps1 - - 19|19 B eukaryotic translation elongation factor 1 alpha 1, pseudogene 1 pseudo 104896 Mm.380740 AI852580 - - - expressed sequence AI852580 protein-coding 78230 5033405D04Rik - - 8|8 RIKEN cDNA 5033405D04 gene protein-coding 105245626 XR_873940 Gm41055 - - 13 D2.1|13 predicted gene, 41055 ncRNA 105246744 XR_878655 Gm41986 - - 2 H4|2 predicted gene, 41986 ncRNA 102633025 XR_382567 Gm30950 - - 13 B3|13 predicted gene, 30950 ncRNA 105243695 XR_878129 Gm39522 - - X A7.3|X predicted gene, 39522 ncRNA 13680 Mm.287901 NM_007916 ENSMUSG00000015023 Ddx19a DBP5|Ddx19|Eif4a-rs1 - 8|8 E1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a protein-coding 18140 Mm.42196 NM_010931 ENSMUSG00000001228 Uhrf1 AL022808|ICBP90|Np95|RNF106 - 17|17 D ubiquitin-like, containing PHD and RING finger domains, 1 protein-coding 12059 bd - - - bradypneic unknown 73898 Mm.39860 4930429E23Rik - - 4|4 D3 RIKEN cDNA 4930429E23 gene protein-coding 100417967 Gm18924 - - 8|8 B3.3 gem (nuclear organelle) associated protein 8 pseudogene pseudo 72780 Mm.45191 NM_028351 ENSMUSG00000019880 Rspo3 2810459H04Rik|AW742308|Cristin1|Thsd2 - 10|10 A4 R-spondin 3 protein-coding 102635622 Mm.461597 Gm26664 - - 8|8 predicted gene, 26664 ncRNA 52145 Mm.458770 D9Ertd720e - - 9 7.02 cM DNA segment, Chr 9, ERATO Doi 720, expressed unknown 77877 Mm.207311 NM_029998 ENSMUSG00000022195 6030458C11Rik - - 15|15 A1 RIKEN cDNA 6030458C11 gene protein-coding 100048974 Hbtq - - - habituation QTL unknown 102633294 XR_878184 Gm31155 - - X C3|X predicted gene, 31155 ncRNA 13828 Mm.240051 NM_013513 ENSMUSG00000023216 Epb42 Epb4.2 - 2 E5|2 60.37 cM erythrocyte membrane protein band 4.2 protein-coding 268697 Mm.260114 NM_172301 ENSMUSG00000041431 Ccnb1 Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1 - 13 D1|13 53.23 cM cyclin B1 protein-coding 105242814 XR_869576 Gm38923 - - 6 G3|6 predicted gene, 38923 ncRNA 320912 Mm.234723 A330041D05Rik - - 18|18 RIKEN cDNA A330041D05 gene protein-coding 100190765 NR_030602 ENSMUSG00000078027 Mir449b Mirn449b - 13|13 D2.2 microRNA 449b ncRNA 140919 Mm.256618 NM_080853 ENSMUSG00000030500 Slc17a6 2900073D12Rik|DNPI|VGLUT2 - 7|7 B4 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 protein-coding 102414 Mm.25720 NM_007713 ENSMUSG00000032316 Clk3 AI256811 - 9|9 B CDC-like kinase 3 protein-coding 259092 Mm.377836 NM_147088 ENSMUSG00000062142 Olfr569 MOR30-1 - 7|7 E3 olfactory receptor 569 protein-coding 85083 DXMit69 - - - DNA segment, Chr X, Massachusetts Institute of Technology 69 unknown 27381 Mm.103653 NM_013775 ENSMUSG00000060863 Tcl1b2 - - 12|12 E T cell leukemia/lymphoma 1B, 2 protein-coding 102635051 Mm.417771 XR_389965 Gm32486 Gm45329 - 7 F4|7 predicted gene, 32486 ncRNA 434147 Mm.59171 NM_001033781 ENSMUSG00000074274 D930028M14Rik EG434147 - 7|7 A3 RIKEN cDNA D930028M14 gene ncRNA 110606 Mm.151174 NM_145927 ENSMUSG00000033373 Fntb 2010013E13Rik|AA409500 - 12 C3|12 33.73 cM farnesyltransferase, CAAX box, beta protein-coding 232334 Mm.268357 NM_177683 ENSMUSG00000030315 Vgll4 BC048841|VGL-4 - 6|6 E3 vestigial like family member 4 protein-coding 100041273 Mm.379154 NM_001362047 Gm3244 - - 15 D3|15 predicted pseudogene 3244 protein-coding 14463 Mm.247669 NM_008092 ENSMUSG00000021944 Gata4 Gata-4 - 14 D1|14 33.24 cM GATA binding protein 4 protein-coding 105244954 Gm40473 - - 12|12 predicted gene, 40473 ncRNA 19889 Mm.288141 NM_133669 ENSMUSG00000060090 Rp2 AI662636|Rp2h - X|X A1.3 retinitis pigmentosa 2 homolog protein-coding 69617 Mm.41933 NM_145131 ENSMUSG00000021193 Pitrm1 2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104 - 13|13 A1 pitrilysin metallepetidase 1 protein-coding 407831 Mm.34379 NM_001001183 ENSMUSG00000024168 Tmem204 - - 17|17 A3.3 transmembrane protein 204 protein-coding 110915 Lamr1-rs2 67kDa|P40-rs2 - - laminin receptor 1 (ribosomal protein SA), related sequence 2 protein-coding 632982 Cct3-ps1 Cct3-2P|Gm12491|TRiC5-P5 - 4|4 B2 chaperonin containing Tcp1, subunit 3 (gamma) pseudogene 1 pseudo 654439 Mm.246945 D430004P15Rik - - - Riken cDNA D430004P15 gene protein-coding 74055 Mm.34031 NM_019588 ENSMUSG00000024998 Plce1 4933403A21Rik|PLCepsilon|Plce|mKIAA1516 - 19|19 C3 phospholipase C, epsilon 1 protein-coding 108168265 XR_001781769 Gm46538 - - 15 F1|15 predicted gene, 46538 ncRNA 100035736 Pgia23 - - - proteoglycan induced arthritis 23 unknown 18771 Mm.259295 NM_016670 ENSMUSG00000006705 Pknox1 D17Wsu76e|PREP1 - 17 B1|17 16.78 cM Pbx/knotted 1 homeobox protein-coding 103712 Mm.27768 NM_134022 6330403K07Rik AI415455|AV161034|UGS148 - 11|11 B4 RIKEN cDNA 6330403K07 gene protein-coding 67299 Mm.260623 NM_026082 ENSMUSG00000028556 Dock7 3110056M06Rik|Gm430 - 4 C6|4 45.6 cM dedicator of cytokinesis 7 protein-coding 102636198 XR_380272 Gm33333 - - 10 B2|10 predicted gene, 33333 ncRNA 102632803 XR_377645 Gm30781 Gm44019 - 6 B2.3|6 predicted gene, 30781 ncRNA 102640977 LOC102640977 - - 4 E1 protein CDV3 pseudogene pseudo 108168119 n-TFgaa1 Trnaf-gaa|n-Tf1 - 13 A3.1|13 nuclear encoded tRNA pheylalanine 1 (anticodon GAA) tRNA 27873 D16Smh250 - - - DNA segment, Chr 16, St. Mary's Hospital 250 unknown 435616 Gm5699 EG435616 - 1|1 B THO complex 4 pseudogene pseudo 631449 Gm7064 EG631449 - 1 H4|1 predicted gene 7064 pseudo 226518 Mm.40548 NM_175460 ENSMUSG00000042751 Nmnat2 AI843915|D030041I09Rik|PNAT1|PNAT2 - 1|1 G3 nicotinamide nucleotide adenylyltransferase 2 protein-coding 100093685 Trnar-ucg - - - transfer RNA arginine (anticodon UCG) tRNA 102637787 XR_380174 Gm26740 - - 10 A3|10 predicted gene, 26740 ncRNA 235072 Mm.270259 NM_009859 ENSMUSG00000001833 Sept7 Cdc10|E430034N22 - 9|9 A4 septin 7 protein-coding 68564 Mm.428996 NM_001024205 ENSMUSG00000037857 Nufip2 1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321 - 11|11 B5 nuclear fragile X mental retardation protein interacting protein 2 protein-coding 105244343 XM_017319389 Gm39972 - - 2 H1|2 predicted gene, 39972 protein-coding 106497 AA517669 - - - expressed sequence AA517669 unknown 640171 Ctsm-ps - - 13|13 cathepsin M, pseudogene pseudo 64659 Mm.29599 NM_025474 ENSMUSG00000058267 Mrps14 1810032L21Rik|AL022847|Rpms14 - 1|1 H2.1 mitochondrial ribosomal protein S14 protein-coding 666920 Mm.153636 Gm8364 EG666920 - 4|4 B3 predicted gene 8364 unknown 623554 Gm6439 EG623554 - 3|3 H3 transformer 2 beta homolog pseudogene pseudo 53324 Mm.10099 NM_016789 ENSMUSG00000059991 Nptx2 Narp|np2 - 5 G2|5 84.58 cM neuronal pentraxin 2 protein-coding 53716 D4Smh6b D4Pas1 - 4 86.17 cM DNA segment, Chr 4, St. Mary's Hospital 6b unknown 62973 D15Mit241 - - 15 41.4 cM DNA Segment, Chr 15, Massachusetts Institute of Technology 241 unknown 241850 Mm.87455 NM_183181 ENSMUSG00000055882 Abhd16b 1700095H12 - 2|2 H4 abhydrolase domain containing 16B protein-coding 359920 DXMgc75 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 75 unknown 105245785 LOC105245785 - - 14 D1 putative uncharacterized protein ZNRD1-AS1 homolog pseudo 640489 Gm7295 EG640489 - 16|16 C3.3 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 pseudogene pseudo 102632019 XR_381752 Gm26777 - - 12 C3|12 predicted gene, 26777 ncRNA 111162619 LOC111162619 - - - C15 enhancer in intron of tumor protein p63 gene biological-region 14706 Mm.215394 NM_010317 ENSMUSG00000021303 Gng4 - - 13 A1|13 5.29 cM guanine nucleotide binding protein (G protein), gamma 4 protein-coding 378775 Mm.441313 NR_040625 ENSMUSG00000087115 Pcsk2os2 9430032N09Rik|Gm12360 - 2|2 G1 proprotein convertase subtilisin/kexin type 2, opposite strand 2 ncRNA 75275 Mm.159484 NM_029232 ENSMUSG00000041255 Tmco5b 4930563P21Rik - 2|2 E4 transmembrane and coiled-coil domains 5B protein-coding 73176 Mm.425058 XM_993996 ENSMUSG00000114582 3110040M04Rik - - 1|1 G1 RIKEN cDNA 3110040M04 gene protein-coding 105245205 XR_871823 Gm40690 - - 10 B5.3|10 predicted gene, 40690 ncRNA 14660 Mm.398608 NM_001081081 ENSMUSG00000026103 Gls 6330442B14|AI314027|B230365M23Rik - 1 C1.1|1 26.86 cM glutaminase protein-coding 258736 Mm.223169 NM_146741 ENSMUSG00000044040 Olfr1497 MOR212-1 - 19|19 A olfactory receptor 1497 protein-coding 70434 Mm.432136 2610201A13Rik AW488471 - - RIKEN cDNA 2610201A13 gene protein-coding 102635392 XR_375015 Gm32746 - - 2 F3|2 predicted gene, 32746 ncRNA 624906 Gm14928 EG624906 - X|X E1 predicted gene 14928 protein-coding 111861 H2-I H-2I - - H2 I region, includes H2-Aa, Ab, Bl, Ea, Eb, Eb2, Ob, Pb other 665755 XM_011249886 ENSMUSG00000096728 LOC665755 - - 5|5 PRAME family member 8-like protein-coding 665463 Rps12-ps12 EG665463|Gm7643 - X|X E3 ribosomal protein S12, pseudogene 12 pseudo 100040001 Gm2546 - - 7 D3|7 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105245614 XR_873880 Gm41044 - - 13 D1|13 predicted gene, 41044 ncRNA 101056200 Gm29795 - - 8|8 predicted gene, 29795 protein-coding 100036210 Musz4 Ms5 - - muscle size 4 unknown 73774 Mm.399145 NR_151500 4930422M22Rik - - 9|9 RIKEN cDNA 4930422M22 gene ncRNA 19113 Mm.196424 NM_008930 ENSMUSG00000006488 Prl7a1 AA407021|AA409971|AA410116|PLP-E|PLP-G|Prlpe|Prlpg - 13 A3.1|13 12.56 cM prolactin family 7, subfamily a, member 1 protein-coding 102141 Mm.267258 NM_207213 ENSMUSG00000038291 Snx25 AI661919|Gm1699|Gm173|Sbbi31 - 8|8 B1.1 sorting nexin 25 protein-coding 102634295 Mm.412139 Gm16189 - - X|X 36.85 cM predicted gene 16189 ncRNA 383949 Gm5284 EG383949 - 3|3 F1 protein phosphatase 1, catalytic subunit, alpha isoform pseudogene pseudo 61880 D1Mit325 - - 1 32.79 cM DNA segment, Chr 1, Massachusetts Institute of Technology 325 unknown 667795 Gm8818 EG667795 - 1|1 G3 predicted pseudogene 8818 pseudo 68416 Mm.25210 NM_026716 ENSMUSG00000084174 Sycn 0910001K16Rik|1810038B08Rik|SYL - 7|7 B1 syncollin protein-coding 100534384 Gm21051 - - 12|12 D3 signal recognition particle receptor ('docking protein') pseudogene pseudo 102634434 Mm.421311 XR_001779217 Gm32017 - - 9 D|9 predicted gene, 32017 ncRNA 100041785 Gm16399 EG622296 - 3|3 A1 cytochrome c oxidase, subunit VIc pseudogene pseudo 320810 E030026E10Rik - - 5|5 RIKEN cDNA E030026E10 gene protein-coding 102632825 XR_387001 Gm30798 - - X C3|X predicted gene, 30798 ncRNA 105244233 Mm.31158 Gm39879 - - 2|2 predicted gene, 39879 ncRNA 27715 D1Dau23 - - - DNA segment, Chr 1, DA Underhill 23 unknown 66593 Mm.46716 NM_023232 ENSMUSG00000029433 Diablo 0610041G12Rik|1700006L01Rik|AU040403|Smac - 5|5 F diablo, IAP-binding mitochondrial protein protein-coding 61528 D8Mit186 - - 8 63.1 cM DNA segment, Chr 8, Massachusetts Institute of Technology 186 unknown 100035363 Ccmp2 - - - cerebellar cAMP 2 unknown 117080 Cpfd4 Cpfd-4q - - cerebellum pattern fissures, declival 4 unknown 67154 Mm.130883 NM_026002 ENSMUSG00000022255 Mtdh 2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric - 15 B3.1|15 13.98 cM metadherin protein-coding 105244774 Gm40326 - - 5|5 predicted gene, 40326 ncRNA 665352 Gm7598 EG665352 - X A3.3|X coiled-coil domain containing 94 pseudogene pseudo 56221 Mm.31505 NM_019577 ENSMUSG00000004814 Ccl24 CKb-6|MPIF-2|Scya24 - 5|5 G2 chemokine (C-C motif) ligand 24 protein-coding 100862135 Gm21506 - - Y|Y predicted gene, 21506 protein-coding 100035767 Abbp1 - - - A/J and C57BL/6 blood pressure 1 unknown 622976 Mm.482747 NM_001037917 ENSMUSG00000048621 Gm6377 EG622976 - X|X D predicted gene 6377 protein-coding 105242444 XR_867945 Gm38709 - - 4 C6|4 predicted gene, 38709 ncRNA 492971 Hdlq22 - - 5 17.28 cM HDL QTL 22 unknown 105242823 XR_869599 Gm38928 - - 6 G3|6 predicted gene, 38928 ncRNA 61630 D8Mit250 - - 8 44.25 cM DNA segment, Chr 8, Massachusetts Institute of Technology 250 unknown 93723 Mm.247203 NM_033594 ENSMUSG00000102742 Pcdhga11 - - 18|18 B3 protocadherin gamma subfamily A, 11 protein-coding 106821731 Alpha-re alpha-MRE - 11 A4 alpha-globin locus regulatory region biological-region 111147 Zfp79-rs1 - - - zinc finger protein 79, related sequence 1 pseudo 102631802 XR_381986 Gm30048 - - 12 F1|12 predicted gene, 30048 ncRNA 73549 Mm.398741 NR_038059 ENSMUSG00000079407 1700110I01Rik 100040740|1700016F01Rik|Gm2938 - 14|14 A1 RIKEN cDNA 1700110I01 gene ncRNA 19672 Mm.4876 NM_009037 ENSMUSG00000005973 Rcn1 Rcn - 2 E3|2 55.18 cM reticulocalbin 1 protein-coding 106014250 LOC106014250 - - - Pax6 upstream regulatory region biological-region 102633426 Gm31256 - - 1 H1|1 predicted gene, 31256 pseudo 70784 Mm.35827 NM_001033158 ENSMUSG00000041696 Rasl12 4631404I11Rik - 9|9 C RAS-like, family 12 protein-coding 100862113 Gm21488 - - Y|Y predicted gene, 21488 protein-coding 109136575 LOC109136575 - - - CR4 enhancer downstream of Fgf8 biological-region 100036189 Wbcq5 - - - white blood cell QTL 5 unknown 105246357 Gm41656 - - 17|17 predicted gene, 41656 protein-coding 77225 Mm.491511 9330161L09Rik - - 12|12 E RIKEN cDNA 9330161L09 gene ncRNA 105246227 XR_876652 Gm41539 - - 17 A3.2|17 predicted gene, 41539 ncRNA 51986 D14Sut1e - - - DNA segment, Chr 14, Sutcliffe 1, expressed unknown 217995 Mm.171186 NM_144835 ENSMUSG00000050244 Heatr1 AA517551|B130016L12Rik|BC019693 - 13 A1|13 4.56 cM HEAT repeat containing 1 protein-coding 21176 T(4;16)31Ad T31Ad - - reciprocal translocation, Chr 4 and 16, Adler 31 other 76459 Mm.277921 NM_178396 ENSMUSG00000032373 Car12 2310047E01Rik|AI314958|CA-XII|Ca12 - 9|9 C carbonic anhydrase 12 protein-coding 266645 Mm.25735 NM_001033041 ENSMUSG00000026348 Acmsd - - 1|1 E3 amino carboxymuconate semialdehyde decarboxylase protein-coding 76163 Mm.30241 6330537M06Rik - - 8|8 RIKEN cDNA 6330537M06 gene protein-coding 102634450 XR_391441 ENSMUSG00000109118 Gm32031 Gm45109 - 7 B3|7 predicted gene, 32031 ncRNA 110467530 LOC110467530 - - - Cyp1a2 5' enhancer biological-region 16978 Mm.45039 NM_008515 ENSMUSG00000026305 Lrrfip1 AU024550|Fliiap1 - 1|1 D leucine rich repeat (in FLII) interacting protein 1 protein-coding 107613 Lblr - - - lymphoblastic lymphoma resistance protein-coding 22307 Mm.261598 NM_009491 ENSMUSG00000067010 Vmn2r10 V2r16|VR16 - 5|5 F vomeronasal 2, receptor 10 protein-coding 432768 Gm5451 EG432768 - 13|13 B3 predicted gene 5451 protein-coding 320885 B930008F14Rik - - X|X E3 RIKEN cDNA B930008F14 gene protein-coding 105244626 XR_867943 Gm40207 - - 4 C5|4 predicted gene, 40207 ncRNA 105247078 XR_880946 Gm42247 - - 2 H4|2 predicted gene, 42247 ncRNA 258964 Mm.389986 NM_146962 ENSMUSG00000057997 Olfr541 MOR253-3 - 7|7 F4 olfactory receptor 541 protein-coding 102866 Mm.28777 NM_145629 ENSMUSG00000016382 Pls3 AI115446|AL024105 - X|X A7.3 plastin 3 (T-isoform) protein-coding 19205 Mm.265610 NM_008956 ENSMUSG00000006498 Ptbp1 AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB - 10 C1|10 39.72 cM polypyrimidine tract binding protein 1 protein-coding 73710 Mm.379227 NM_023716 ENSMUSG00000045136 Tubb2b 2410129E14Rik|brdp - 13|13 A3.3 tubulin, beta 2B class IIB protein-coding 56349 Mm.22261 NM_019671 ENSMUSG00000021215 Net1 Net1a|mNET1 - 13|13 A1 neuroepithelial cell transforming gene 1 protein-coding 102633352 XR_373509 Gm31197 - - 1 C3|1 predicted gene, 31197 ncRNA 319172 Mm.423402 NM_175660 ENSMUSG00000061615 Hist1h2ab H2A.1|H2a-53 - 13|13 A3.1 histone cluster 1, H2ab protein-coding 331528 Mm.487600 LOC331528 - - X|X F1 uncharacterized LOC331528 unknown 100036358 Nilac9 - - - nicotine induced locomotor activity 9 unknown 330820 Mm.212913 NM_177901 ENSMUSG00000069971 4933402J07Rik - - 8|8 C3 RIKEN cDNA 4933402J07 gene protein-coding 207618 Mm.478808 NM_001163223 ENSMUSG00000092094 Zfp804b Gm441 - 5|5 A1 zinc finger protein 804B protein-coding 105243443 LOC105243443 - - - uncharacterized LOC105243443 ncRNA 105246147 XR_876194 Gm41483 - - 16 C3.3|16 predicted gene, 41483 ncRNA 258943 Mm.377762 NM_146941 ENSMUSG00000075382 Olfr353 MOR127-3 - 2|2 B olfactory receptor 353 protein-coding 109275 Mm.27747 NM_175419 ENSMUSG00000037761 Actr5 AA545173|B430109J19Rik - 2|2 H1 ARP5 actin-related protein 5 protein-coding 102635492 LOC102635492 - - 7 E1 40S ribosomal protein S11-like pseudo 108167896 XR_001780191 Gm46278 - - 11 A4|11 predicted gene, 46278 ncRNA 100035847 Tailq2 - - - tail length QTL 2 unknown 111553 Pmv44 Pmv-44 - - polytropic murine leukemia virus 44 other 56016 Mm.35551 NM_019487 ENSMUSG00000019853 Hebp2 SOUL - 10|10 A3 heme binding protein 2 protein-coding 74754 Mm.133370 NM_053272 ENSMUSG00000034926 Dhcr24 2310076D10Rik|5830417J06Rik|mKIAA0018 - 4|4 C7 24-dehydrocholesterol reductase protein-coding 62337 D19Mit96 - - 19 15.54 cM DNA segment, Chr 19, Massachusetts Institute of Technology 96 unknown 233490 Mm.29496 NM_145151 ENSMUSG00000051451 Crebzf 1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf - 7|7 E1 CREB/ATF bZIP transcription factor protein-coding 100048185 XM_011242645 Gm29692 - - 9|9 A5.3 predicted gene, 29692 protein-coding 116902 Lvif - - - leukemia virus inactivating factor protein-coding 380728 Mm.297539 NM_001081194 ENSMUSG00000035355 Kcnh4 BEC2 - 11 D|11 63.57 cM potassium voltage-gated channel, subfamily H (eag-related), member 4 protein-coding 102467414 n-THgtg9 n-Th9 - 3 F2.1|3 nuclear encoded tRNA histidine 9 (anticodon GTG) tRNA 78280 5330430B06Rik - - 17|17 RIKEN cDNA 5330430B06 gene protein-coding 13874 Mm.4791 NM_007950 ENSMUSG00000029377 Ereg EPR - 5|5 E1 epiregulin protein-coding 102640682 XM_017312466 Gm36694 - - 7 A3|7 predicted gene, 36694 protein-coding 109279961 LOC109279961 Mm427 - - VISTA enhancer mm427 biological-region 102632032 Gm30207 - - 6|6 predicted gene, 30207 ncRNA 21677 Mm.3019 NM_011565 ENSMUSG00000030796 Tead2 ETEF-1|ETF|Etdf|TEAD-2|TEF-4|TEF4 - 7 B3|7 29.19 cM TEA domain family member 2 protein-coding 492890 Cd8mts3 - - 2 56.21 cM CD8 memory T cell subset 3 unknown 109280060 LOC109280060 Mm529 - - VISTA enhancer mm529 biological-region 110729 Odc-rs21 - - - ornithine decarboxylase, related sequence 21 protein-coding 105246500 XR_877581 Gm41784 - - 18 E3|18 predicted gene, 41784 ncRNA 359872 DXMgc23 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 23 unknown 100417766 Gm17045 - - 14|14 A1 esterase D/formylglutathione hydrolase pseudogene pseudo 105244849 XR_872671 Gm40383 - - 12 A3|12 predicted gene, 40383 ncRNA 100093659 Trnat-ggu - - - transfer RNA threonine (anticodon GGU) tRNA 102637087 XM_011250925 Gm33989 - - 7 B3|7 predicted gene, 33989 protein-coding 100418240 Gm19093 - - 7|7 A1 zinc finger and SCAN domain containing 4, pseudogene 2 pseudogene pseudo 105246970 Gm42159 - - 5|5 predicted gene, 42159 ncRNA 111822 Iapls2-24 - - - intracisternal A particle, lymphocyte specific 2-24 other 68114 Mm.273418 NM_023431 ENSMUSG00000020156 Mum1 2610019J09|9430059D04Rik|UBE-1C2 - 10|10 C1 melanoma associated antigen (mutated) 1 protein-coding 105246628 Gm41893 - - X|X predicted gene, 41893 ncRNA 108412 Xmmv16 Env-16|Xmmv-16 - - xenotropic-MCF leukemia virus 16 other 13175 Mm.393242 NM_019978 ENSMUSG00000027797 Dclk1 1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369 - 3|3 C doublecortin-like kinase 1 protein-coding 225922 Mm.26881 NM_001037634 ENSMUSG00000055895 Oosp2 Gm99|Plac1l|Tmem122 - 19|19 A oocyte secreted protein 2 protein-coding 105242572 Gm38746 - - 5|5 predicted gene, 38746 ncRNA 108167440 XR_001778181 LOC108167440 - - 7 D1 uncharacterized LOC108167440 protein-coding 105246092 XR_875989 Gm41436 - - 16 B2|16 predicted gene, 41436 ncRNA 109115963 LOC109115963 - - - Fgf3 upstream enhancer biological-region 105245874 XR_875004 Gm41257 - - 15 A1|15 predicted gene, 41257 ncRNA 13491 Mm.41075 NM_007878 ENSMUSG00000025496 Drd4 AW125663|D4R|Drd-4 - 7 F5|7 86.6 cM dopamine receptor D4 protein-coding 61272 D2Mit234 - - - DNA segment, Chr 2, Massachusetts Institute of Technology 234 unknown 102467449 n-TAagc5 n-Ta5 - - nuclear encoded tRNA alanine 5 (anticodon AGC) tRNA 61021 D6Mit169 - - 6 5.33 cM DNA segment, Chr 6, Massachusetts Institute of Technology 169 unknown 66156 Mm.21645 NM_025389 ENSMUSG00000025135 Anapc11 1110011I19Rik|R75218 - 11|11 E2 anaphase promoting complex subunit 11 protein-coding 102640490 LOC102640490 - - 2 A1 acyl-CoA-binding protein pseudogene pseudo 545951 Mm.212736 NR_153827 ENSMUSG00000101708 Gm28453 1700010N08Rik|Gm38683 - 7|7 B3 predicted gene 28453 ncRNA 114643 Mm.43230 NM_033541 ENSMUSG00000001166 Oas1c Oasl2|Oasl5 - 5 F|5 60.64 cM 2'-5' oligoadenylate synthetase 1C protein-coding 108168700 XR_001782986 LOC108168700 - - - uncharacterized LOC108168700 ncRNA 100041985 Gm3608 - - 1|1 E2.1 capping protein (actin filament) muscle Z-line, alpha 1 pseudogene pseudo 85211 D14Mit165 - - 14 56.16 cM DNA segment, Chr 14, Massachusetts Institute of Technology 165 unknown 76203 6430605C03Rik - - 2|2 RIKEN cDNA 6430605C03 gene protein-coding 15377 Mm.42260 NM_008260 ENSMUSG00000040891 Foxa3 Hnf-3g|Hnf3g|Tcf-3g|Tcf3g - 7 A3|7 9.46 cM forkhead box A3 protein-coding 16763 Mm.36726 NM_133664 ENSMUSG00000041782 Lad1 LADA|lad-1 - 1|1 E4 ladinin protein-coding 108167677 XR_001779264 Gm46126 - - 9 E3.3|9 predicted gene, 46126 ncRNA 102640728 Gm36728 - - Y|Y predicted gene, 36728 protein-coding 78541 Mm.200766 NM_030121 ENSMUSG00000048175 Asb8 4930539L19Rik|AI788835|C430011H06Rik - 15|15 F1 ankyrin repeat and SOCS box-containing 8 protein-coding 66839 Mm.281086 NM_024179 ENSMUSG00000024442 0610009O20Rik 2700004E22Rik|Dele|Kiaa0141 - 18|18 B3 RIKEN cDNA 0610009O20 gene protein-coding 723924 NR_029799 ENSMUSG00000065583 Mir218-2 Mirn218-2|mir-218-2 - 11|11 A4 microRNA 218-2 ncRNA 103220 Mm.440762 NM_153595 ENSMUSG00000044937 Ttc41 AI449705|AU041509|Gnn - 10 C1|10 43.07 cM tetratricopeptide repeat domain 41 protein-coding 102638138 Gm26585 - - 10 A3|10 predicted gene, 26585 pseudo 102639186 XR_386741 Gm26644 - - 19 C3|19 predicted gene, 26644 ncRNA 105244590 XR_867774 Gm16231 - - 3 H3|3 77.16 cM predicted gene 16231 ncRNA 75459 Mm.45462 NM_001162880 ENSMUSG00000078938 Syce3 1700007E06Rik|TSEG-2|TSEG2 - 15|15 E3 synaptonemal complex central element protein 3 protein-coding 72647 Mm.410849 NR_045308 ENSMUSG00000100119 2700089I24Rik - - 19|19 D3 RIKEN cDNA 2700089I24 gene ncRNA 14236 Mm.112824 NM_180974 ENSMUSG00000034998 Foxn2 3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF - 17|17 E4 forkhead box N2 protein-coding 109267 Mm.332750 NM_001160366 ENSMUSG00000029699 Ssc4d C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d - 5|5 G2 scavenger receptor cysteine rich family, 4 domains protein-coding 54390 Mm.31775 NM_019436 ENSMUSG00000028460 Sit1 Sit - 4|4 A5 suppression inducing transmembrane adaptor 1 protein-coding 269514 Mm.40708 NM_172988 ENSMUSG00000040410 Fbxl4 AI836810|FBL4|FBL5 - 4|4 A3 F-box and leucine-rich repeat protein 4 protein-coding 320484 Mm.122284 NM_178785 ENSMUSG00000052142 Rasal3 A430107D22Rik - 17|17 B1 RAS protein activator like 3 protein-coding 329366 Mm.77712 NM_177841 ENSMUSG00000048038 Ccdc187 4932418E24Rik - 2|2 A3 coiled-coil domain containing 187 protein-coding 102637354 XR_375929 LOC102637354 - - 3 F2.2 uncharacterized LOC102637354 ncRNA 102466782 NR_105961 ENSMUSG00000098786 Mir6995 Gm27576|mmu-mir-6995 - 19|19 C3 microRNA 6995 ncRNA 671840 Gm14668 - - X|X A7.1 tetratricopeptide repeat domain 39C pseudogene pseudo 214292 Mm.425290 NM_001013751 ENSMUSG00000085957 Syna Gm453|Gm52|syncytin-A - 5|5 G2 syncytin a protein-coding 102638390 Gm34967 - - 16 B3|16 predicted gene, 34967 pseudo 105243182 XR_870418 Gm39172 - - 8 B1.1|8 predicted gene, 39172 ncRNA 62388 D16Mit108 - - 16 2.76 cM DNA segment, Chr 16, Massachusetts Institute of Technology 108 unknown 67184 Mm.21162 NM_023312 ENSMUSG00000036199 Ndufa13 2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19 - 8|8 B3.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 protein-coding 50769 Mm.319599 NM_015803 ENSMUSG00000021983 Atp8a2 AI415030|Atpc1b|agil|wl - 14|14 C3-D1 ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 protein-coding 108168596 XM_017318802 LOC108168596 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 74045 Mm.292156 NR_046034 ENSMUSG00000084980 Slc36a1os 4921508A21Rik - 11|11 B1.3 solute carrier family 36 (proton/amino acid symporter), member 1, opposite strand ncRNA 100035756 Pcfm1 - - 2 17.18 cM periosteal circumference and femur length 1 unknown 80909 Mm.45218 NM_030719 ENSMUSG00000015944 Gatsl2 7530428J21Rik|AW742413|Castor2|Gats|Gatsl1 - 5|5 G2 GATS protein-like 2 protein-coding 100043119 Mm.421252 Gm4241 - - 13 C3|13 predicted gene 4241 protein-coding 433687 Gm11824 - - 4|4 A1 ribosomal protein SA pseudogene pseudo 402728 Mm.444553 NR_002867 ENSMUSG00000086029 Pax6os1 4831410G09Rik|Pax6os - 2|2 E3 paired box 6 opposite strand 1 ncRNA 102640239 XR_377972 Gm36355 Gm44082 - 6 E3|6 predicted gene, 36355 ncRNA 105242935 XR_882066 Gm39007 - - 7 B3|7 predicted gene, 39007 ncRNA 258570 Mm.377572 NM_146577 ENSMUSG00000075201 Olfr1043 MOR185-7 - 2|2 D olfactory receptor 1043 protein-coding 85227 D10Mit270 - - 10 73.67 cM DNA Segment, Chr 10, Massachusetts Institute of Technology 270 unknown 493024 Hdis - - 1 44.69 cM horizontal distance traveled unknown 60952 DXMit73 - - X 33.5 cM DNA segment, Chr X, Massachusetts Institute of Technology 73 unknown 100346 AU067697 - - - expressed sequence AU067697 unknown 100043326 Mm.479858 NM_001270541 ENSMUSG00000078754 Scgb2b3 Abpbg3|Gm4362 - 7 B1|7 secretoglobin, family 2B, member 3 protein-coding 108167737 XR_001779494 Gm46165 - - 1 G3|1 predicted gene, 46165 ncRNA 13595 Mm.27183 NM_007898 ENSMUSG00000031168 Ebp AI255399|Pabp|SI|Td|mSI - X A1.1|X 3.7 cM phenylalkylamine Ca2+ antagonist (emopamil) binding protein protein-coding 20682 Mm.286407 NM_011448 ENSMUSG00000000567 Sox9 2010306G03Rik|AV220920|mKIAA4243 - 11 E2|11 77.27 cM SRY (sex determining region Y)-box 9 protein-coding 51917 D2Ertd691e - - 2 75.41 cM DNA segment, Chr 2, ERATO Doi 691, expressed unknown 100036506 Vmmt20 - - - vertebral morphology and mechanical traits 20 unknown 105244269 XR_866651 Gm39910 - - 2 E4|2 predicted gene, 39910 ncRNA 52165 D2Ertd105e - - 2 71.15 cM DNA segment, Chr 2, ERATO Doi 105, expressed unknown 102467410 n-TMcat19 n-Tm19 - - nuclear encoded tRNA methionine 19 (anticodon CAT) tRNA 624662 Gm6517 EG624662 - 5|5 C3.1 predicted gene 6517 pseudo 74062 Mm.394766 NR_001584 Speer8-ps1 4933405L09Rik|SPEER-8|Speer8-ps - 5|5 A2 spermatogenesis associated glutamate (E)-rich protein 8, pseudogene 1 pseudo 100036166 Pscr3 - - - corneal resistance to P. aeruginosa 3 unknown 105247308 LOC105247308 - - - poly(rC)-binding protein 2-like pseudo 66254 Mm.9563 NM_025447 ENSMUSG00000021692 Dimt1 1500031M22Rik|AV111347|Dimt1l - 13|13 D2.1 DIM1 dimethyladenosine transferase 1-like (S. cerevisiae) protein-coding 216198 Mm.296142 NM_146008 ENSMUSG00000020034 Tcp11l2 E430026E19Rik - 10|10 C1 t-complex 11 (mouse) like 2 protein-coding 11769 Mm.833 NM_007457 ENSMUSG00000004849 Ap1s1 AP19 - 5|5 G2 adaptor protein complex AP-1, sigma 1 protein-coding 100628568 NR_039540 ENSMUSG00000092830 Mir3963 mmu-mir-3963|mu-mir-3963 - 3 H3|3 76.76 cM microRNA 3963 ncRNA 100039557 Gm2309 - - X A3.2|X predicted gene 2309 protein-coding 107770 Mm.37974 NM_181540 ENSMUSG00000036151 Tm6sf2 - - 8|8 B3.3 transmembrane 6 superfamily member 2 protein-coding 268749 Mm.23748 NM_194346 ENSMUSG00000047098 Rnf31 AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217 - 14|14 C3 ring finger protein 31 protein-coding 99526 Mm.491248 NM_133857 ENSMUSG00000039701 Usp53 AA939927|Phxr3|Sp6|mKIAA1350|mbo - 3|3 G1 ubiquitin specific peptidase 53 protein-coding 76005 Mm.416969 5033426E14Rik - - 8|8 RIKEN cDNA 5033426E14 gene ncRNA 621304 Mm.255719 XR_375474 Gm6209 EG621304 - 3|3 C predicted gene 6209 unknown 108421 Xmmv30 Env-30|Xmmv-30 - - xenotropic-MCF leukemia virus 30 other 108071 Mm.235018 NM_001033224 ENSMUSG00000049583 Grm5 6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b - 7|7 D3 glutamate receptor, metabotropic 5 protein-coding 111245 Mif-ps2 - - - macrophage migration inhibitory factor, pseudogene 2 pseudo 105243794 XM_011249367 ENSMUSG00000109737 Gm39566 - - 11 B3|11 predicted gene, 39566 protein-coding 76885 6430514K02Rik - - 8|8 RIKEN cDNA 6430514K02 gene protein-coding 219132 Mm.479285 NM_199015 ENSMUSG00000068245 Phf11d D14Ertd668e|Phf11|Phf11l - 14 C3|14 31.48 cM PHD finger protein 11D protein-coding 105243945 XR_865483 Gm39654 - - 1 C2|1 predicted gene, 39654 ncRNA 22407 wn - - - white nose unknown 71538 Mm.28584 NM_023605 ENSMUSG00000001366 Fbxo9 9030401P18Rik|AA986398 - 9|9 E1 f-box protein 9 protein-coding 66895 Mm.28943 NM_025831 ENSMUSG00000021411 Pxdc1 1300014I06Rik - 13 A3.3|13 PX domain containing 1 protein-coding 171507 Lith5 - - 9 45.34 cM lithogenic gene 5 unknown 100194 Mm.441417 AI666798 - - - expressed sequence AI666798 protein-coding 279618 Mm.296522 NM_001271548 Gm715 - - X|X A6 predicted gene 715 protein-coding 100502766 Mm.335713 NM_001195298 ENSMUSG00000079553 Kifc1 100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a - 17 B1|17 17.98 cM kinesin family member C1 protein-coding 70988 Mm.161414 NM_027637 ENSMUSG00000086727 4931428L18Rik 4930563O14Rik - 1|1 B RIKEN cDNA 4931428L18 gene ncRNA 100417103 Gm18398 - - 14|14 A3 aconitase 2, mitochondrial pseudogene pseudo 110947 Tceb1l-rs2 15kDa|Ocp2-rs2 - - transcription elongation factor B (SIII), polypeptide 1-like, related sequence 2 protein-coding 102634569 XR_376640 Gm32117 - - 4 D2.2|4 predicted gene, 32117 ncRNA 668932 Dnmt3b-ps1 Dnmt3c|Dnmt3c-ps|Gm14490 - 2|2 H1 DNA methyltransferase 3B, pseudogene 1 pseudo 62287 D19Mit55 - - 19 51.34 cM DNA segment, Chr 19, Massachusetts Institute of Technology 55 unknown 381110 Mm.209801 NM_201361 ENSMUSG00000036368 Rmdn2 AW061290|Fam82a1|RMD-2|mRMD-2 - 17|17 E3 regulator of microtubule dynamics 2 protein-coding 60425 Mm.266972 NM_021791 ENSMUSG00000024871 Doc2g D830013O18Rik - 19|19 A double C2, gamma protein-coding 244882 Mm.325589 NM_001033535 ENSMUSG00000074345 Tnfaip8l3 9930029P06Rik|Gm517 - 9|9 A5.3 tumor necrosis factor, alpha-induced protein 8-like 3 protein-coding 73852 Mm.29006 NM_027271 ENSMUSG00000025766 D3Ertd751e 2810009O15Rik|4930415G15Rik - 3|3 B DNA segment, Chr 3, ERATO Doi 751, expressed protein-coding 67117 Mm.29150 NM_025975 ENSMUSG00000031176 Dynlt3 2310075M16Rik|AU042796|Tcte1l - X|X A1.1 dynein light chain Tctex-type 3 protein-coding 268935 Mm.258491 NM_001004366 ENSMUSG00000038677 Scube3 CEGF3|D030038I21Rik - 17|17 A3.3 signal peptide, CUB domain, EGF-like 3 protein-coding 76817 2700052C19Rik - - - RIKEN cDNA 2700052C19 gene protein-coding 105246069 XR_875900 Gm41419 - - 16 A1|16 predicted gene, 41419 ncRNA 492831 Bmd13 - - 13 21.73 cM bone mineral density 13 unknown 69697 Mm.390010 NM_027171 ENSMUSG00000044433 Camsap3 2310057J16Rik|Kiaa1543|Nezha - 8|8 A1.1 calmodulin regulated spectrin-associated protein family, member 3 protein-coding 102467326 n-TIaat13 n-Ti13 - 1 G3|1 nuclear encoded tRNA isoleucine 13 (anticodon TAT) tRNA 16223 In(1)24Rk-d In(1)24Rk|In24Rk - - inversion, Chr 1, Roderick 24, distal other 102638438 Gm35005 - - 9|9 predicted gene, 35005 ncRNA 442835 Mm.99065 NM_001002791 ENSMUSG00000027468 Defb22 9230002F21Rik - 2|2 G3 defensin beta 22 protein-coding 67800 Mm.180189 NM_026384 ENSMUSG00000030747 Dgat2 0610010B06Rik|ARAT|DGAT-2 - 7|7 E1 diacylglycerol O-acyltransferase 2 protein-coding 20729 Mm.188432 NM_011462 ENSMUSG00000021395 Spin1 Spin - 13 A5|13 26.04 cM spindlin 1 protein-coding 243923 Mm.222680 NM_145840 ENSMUSG00000056043 Rgs9bp R9AP|Rgs9-1bp - 7|7 B2 regulator of G-protein signalling 9 binding protein protein-coding 76684 Mm.491043 NR_040574 ENSMUSG00000086550 Pla2g10os 1810007I06Rik - 16|16 A1 phospholipase A2, group X, opposite strand ncRNA 62083 D10Mit69 - - 10 49.23 cM DNA segment, Chr 10, Massachusetts Institute of Technology 69 unknown 319788 Mm.96073 A830058I18Rik - - 8|8 A1.1 RIKEN cDNA A830058I18 gene protein-coding 105246976 Gm42164 - - 5|5 predicted gene, 42164 protein-coding 319688 Mm.124571 NM_176978 5930422O12Rik - - 8|8 A4 RIKEN cDNA 5930422O12 gene unknown 102635968 XR_387539 Gm33169 - - 3 A1|3 predicted gene, 33169 ncRNA 102641286 Mm.330572 XR_866711 ENSMUSG00000087162 Gm14244 - - 2 F1|2 62.08 cM predicted gene 14244 ncRNA 625335 Gm13311 - - 2|2 A2 OTK27 pseudo 431706 Mm.439456 NM_001003666 ENSMUSG00000055341 Zfp457 Rslcan-6 - 13 B3|13 34.54 cM zinc finger protein 457 protein-coding 111666 Igh-V24 - - - immunoglobulin heavy chain (V24 family) other 67306 Mm.332366 NM_173181 ENSMUSG00000043542 Zc2hc1a 3110050N22Rik|AI790358|AU023959|Fam164a - 3|3 A1 zinc finger, C2HC-type containing 1A protein-coding 100040628 Gm2875 - - 8 C5|8 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 635617 Gm7162 EG635617 - 17 A1|17 RAN GTPase activating protein 1 pseudogene pseudo 668836 Gm9390 EG668836 - 17|17 E3 Wilms' tumour 1-associating protein pseudogene pseudo 492889 Cd8mts1 - - 1 80.33 cM CD8 T memory cell subset 1 unknown 16745 l1Rk4 l(1)-4Rk - - lethal, Chr 1, Roderick 4 unknown 22192 Mm.196580 NM_145578 ENSMUSG00000005575 Ube2m 2510040H03Rik|UBC12|Ubc-rs2 - 7 A1|7 7.73 cM ubiquitin-conjugating enzyme E2M protein-coding 666044 Gm15566 EG666044 - 9 F4|9 ribosomal protein L19 pseudogene pseudo 102635766 Gm33020 - - 13|13 predicted gene, 33020 ncRNA 74703 Mm.196017 NM_029061 ENSMUSG00000025808 Ccdc7a 4930517G15Rik|4930540C21Rik|Biot2|Ccdc7 - 8|8 E2 coiled-coil domain containing 7A protein-coding 105245074 XR_001780695 Gm40576 - - 12 F1|12 predicted gene, 40576 ncRNA 100041576 Mm.451765 NR_027993 ENSMUSG00000015882 Gm3414 - - 5 B3|5 predicted gene 3414 ncRNA 105245580 XM_011244606 A930018O16Rik - - 13|13 B3 RIKEN cDNA A930018O16 gene protein-coding 102631919 Gm21963 - - 13|13 predicted gene, 21963 pseudo 258279 Mm.377410 NM_146282 ENSMUSG00000058692 Olfr846 MOR149-3 - 9|9 A2 olfactory receptor 846 protein-coding 319506 Mm.304916 XR_880698 7530428D23Rik - - 3|3 A3 RIKEN cDNA 7530428D23 gene ncRNA 100035354 Neogq1 - - 9 31.63 cM neonatal growth QTL 1 unknown 61056 D5Mit331 - - 5 2.36 cM DNA segment, Chr 5, Massachusetts Institute of Technology 331 unknown 102636479 XR_374031 Gm33534 - - 2 A3|2 predicted gene, 33534 ncRNA 109095 Mm.431589 NM_175402 ENSMUSG00000074102 Rbm15b 1810017N16Rik - 9|9 F1 RNA binding motif protein 15B protein-coding 64817 Mm.261024 NM_022814 ENSMUSG00000028369 Svep1 1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom - 4|4 B3 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 70997 Mm.252722 NM_027641 ENSMUSG00000027329 Spef1 4931426K16Rik|Clamp - 2 F1|2 sperm flagellar 1 protein-coding 107321 Mm.313136 NM_134152 ENSMUSG00000024696 Lpxn 4933402K05Rik|A530083L21Rik|AV278559|LDPL - 19|19 A leupaxin protein-coding 13121 Mm.140158 NM_020010 ENSMUSG00000001467 Cyp51 AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI - 5 A1|5 2.3 cM cytochrome P450, family 51 protein-coding 673742 Gm9604 - - 7|7 A1 predicted gene 9604 pseudo 667081 Gm8447 EG667081 - 13|13 C3 predicted gene 8447 pseudo 100038519 Gm9900 - - 11 B1-B2|11 predicted gene 9900 protein-coding 67422 Mm.100290 NM_026144 ENSMUSG00000012117 Dhdds 3222401G21Rik|CIT|DS|HDS|W91638 - 4|4 D3 dehydrodolichyl diphosphate synthase protein-coding 61369 D4Mit203 - - 4 63.26 cM DNA segment, Chr 4, Massachusetts Institute of Technology 203 unknown 78597 Mm.361250 Gm9955 A930009h06rik - 18|18 predicted gene 9955 unknown 72747 Mm.52526 NM_028341 ENSMUSG00000024424 Ttc39c 1700008N02Rik|2810439F02Rik - 18|18 A1 tetratricopeptide repeat domain 39C protein-coding 192287 Mm.228067 NM_138756 ENSMUSG00000032449 Slc25a36 C330005L02Rik - 9|9 E3.3 solute carrier family 25, member 36 protein-coding 229521 Mm.379376 NM_018804 ENSMUSG00000068923 Syt11 1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970 - 3 F1|3 38.96 cM synaptotagmin XI protein-coding 100043803 NM_001111287 Orai2-ps Gm4659|Y0G0112L11Rik - 16 C1.3|16 ORAI calcium release-activated calcium modulator 2, pseudogene pseudo 105245145 XR_871626 ENSMUSG00000110898 Gm40638 - - 10 B2|10 predicted gene, 40638 ncRNA 258017 Olfr451-ps1 MOR257-6 - 6|6 B2.1 olfactory receptor 451, pseudogene 1 pseudo 402741 Mm.438124 C030004N09Rik - - 4|4 RIKEN cDNA C030004N09 gene protein-coding 62606 D13Mit141 - - 13 31.88 cM DNA segment, Chr 13, Massachusetts Institute of Technology 141 unknown 116626 Cafq1 - - 1 80.33 cM caffeine metabolism QTL 1 unknown 231570 Mm.261891 NM_001007574 ENSMUSG00000111375 A830010M20Rik AI849226|Kiaa1107|mKIAA1107 - 5|5 E5 RIKEN cDNA A830010M20 gene protein-coding 170758 Mm.34008 NM_133223 ENSMUSG00000018012 Rac3 Rac1B - 11|11 E2 Rac family small GTPase 3 protein-coding 11830 Mm.45580 NM_009701 ENSMUSG00000044217 Aqp5 - - 15 F1|15 56.13 cM aquaporin 5 protein-coding 75255 Mm.414845 NR_038030 ENSMUSG00000026729 4930562F07Rik - - 1|1 H1 RIKEN cDNA 4930562F07 gene ncRNA 61132 D5Mit406 - - 5 56.88 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 406 unknown 105243290 XR_879199 Gm39252 - - 8 E1|8 predicted gene, 39252 ncRNA 60708 D5Mit72 - - 5 10.06 cM DNA segment, Chr 5, Massachusetts Institute of Technology 72 unknown 97857 C77563 - - - expressed sequence C77563 protein-coding 672902 Gm9583 - - 10|10 C1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 pseudogene pseudo 100043911 Mm.260590 NM_001033179 ENSMUSG00000055897 Ppp4r1l-ps 1700007P14Rik|5830403E09Rik|C030010B13Rik|Ppp4r1l - 2|2 H3 protein phosphatase 4, regulatory subunit 1-like, pseudogene pseudo 100418085 Gm18991 - - 8|8 A1.1 NSA2 ribosome biogenesis homolog pseudogene pseudo 112382 Eae1 - - - experimental allergic encephalomyelitis susceptibility 1 unknown 665119 Mm.102072 NM_001127725 ENSMUSG00000091712 Sec14l5 - - 16|16 A1 SEC14-like lipid binding 5 protein-coding 102465219 NR_105833 ENSMUSG00000099174 Mir6406 Gm27981|mmu-mir-6406 - 11|11 B3 microRNA 6406 ncRNA 102638166 XR_384091 Gm34794 - - 15 C|15 predicted gene, 34794 ncRNA 102638969 XR_390600 Gm35402 - - 4 B3|4 predicted gene, 35402 ncRNA 110700 Cni-rs2 - - - cornichon, related sequence 2 protein-coding 100316700 NR_035472 ENSMUSG00000105743 Mir1949 mir-1949|mmu-mir-1949 - 18 B2|18 19.14 cM microRNA 1949 ncRNA 100316815 NR_130330 ENSMUSG00000076959 Mir669l mmu-mir-669l - 2 A1|2 8.22 cM microRNA 669l ncRNA 12589 Mm.10125 NM_009879 ENSMUSG00000029469 Ift81 AW060663|Cdv-1|Cdv-1r|Cdv1 - 5 F|5 62.44 cM intraflagellar transport 81 protein-coding 320937 Mm.333881 E430014L09Rik - - 7|7 RIKEN cDNA E430014L09 gene protein-coding 72840 2810481J17Rik - - 16|16 RIKEN cDNA 2810481J17 gene protein-coding 13096 Mm.38963 NM_010001 ENSMUSG00000042248 Cyp2c37 - - 19|19 C3 cytochrome P450, family 2. subfamily c, polypeptide 37 protein-coding 102640115 Gm36262 - - 12 C1|12 predicted gene, 36262 pseudo 105246913 XR_880420 Gm42110 - - 5 E2|5 predicted gene, 42110 ncRNA 229488 Mm.119926 NM_172682 ENSMUSG00000051000 Fam160a1 9930021J17Rik - 3|3 F1 family with sequence similarity 160, member A1 protein-coding 105245598 XR_873825 Gm41029 - - 13 D1|13 predicted gene, 41029 ncRNA 100502914 Gm19451 - - 3|3 38.78 cM predicted gene, 19451 ncRNA 213389 Mm.215162 NM_144809 ENSMUSG00000051977 Prdm9 BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7 - 17|17 A2 PR domain containing 9 protein-coding 102634733 LOC102634733 - - 6 A3.3 zinc finger protein 212 pseudogene pseudo 102634060 XR_867664 Gm19708 Gm31738 - 3 G3|3 predicted gene, 19708 ncRNA 108151 Mm.89313 NM_028882 ENSMUSG00000040254 Sema3d 4631426B19Rik - 5|5 A1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D protein-coding 319192 Mm.5220 NM_178212 ENSMUSG00000063954 Hist2h2aa2 H2a-614|H2a-615 - 3|3 F2.1 histone cluster 2, H2aa2 protein-coding 213422 Rpl28-ps4 EG213422|Gm4783 - 6|6 F1 ribosomal protein L28, pseudogene 4 pseudo 52526 D6Mm3e - - - DNA segment, Chr 6, Miriam Meisler 3, expressed unknown 66361 Mm.371617 NM_025512 ENSMUSG00000039795 Zfand1 2310008M20Rik|AW048890 - 3|3 A1 zinc finger, AN1-type domain 1 protein-coding 100041278 Mm.441448 Gm3247 - - 13 D2.3|13 predicted gene 3247 unknown 81006 Mm.160412 NM_030733 ENSMUSG00000040372 Gpr63 PSP24beta|Psp24-2 - 4|4 A3 G protein-coupled receptor 63 protein-coding 109042 Mm.3124 NM_028444 ENSMUSG00000037060 Cavin3 3110015B12Rik|6330514M23Rik|Prkcdbp|SRBC - 7|7 E3 caveolae associated 3 protein-coding 404416 Olfr696-ps1 GA_x5J8B7W6B6J-1522840-1521873 - 7|7 E3 olfactory receptor 696, pseudogene 1 pseudo 102467510 n-TQctg1 n-Tq1 - 13 A3.1|13 nuclear encoded tRNA glutamine 1 (anticodon CTG) tRNA 51795 Mm.1927 NM_016911 ENSMUSG00000090084 Srpx drs|drs-1|drs-2|mDRS-1|mDRS-2 - X|X A1.1 sushi-repeat-containing protein protein-coding 100035654 Wght2 - - - weight 2 unknown 108225 Tyro3-rs1 - - - TYRO3 protein tyrosine kinase, related sequence 1 pseudo 230259 Mm.45688 NM_153158 ENSMUSG00000045071 E130308A19Rik - - 4|4 B3 RIKEN cDNA E130308A19 gene protein-coding 93914 D16Jhu52 332E4.SP6 - - DNA segment, Chr 16, Johns Hopkins University 52 unknown 102637431 Gm34241 - - 3|3 predicted gene, 34241 ncRNA 100534345 Gm21036 - - 7|7 B4 predicted gene, 21036 pseudo 381782 Igkv4-50 Gm1069|IgVk4-50 - 6|6 C1 immunoglobulin kappa variable 4-50 other 320500 Mm.156365 NM_177175 ENSMUSG00000046593 Tmem215 A930001M12Rik - 4|4 A5 transmembrane protein 215 protein-coding 100038597 Mm.41508 A130057D12Rik - - - RIKEN cDNA A130057D12 gene protein-coding 100124459 NR_030608 ENSMUSG00000077931 Mir877 Mirn877|mir-877|mmu-mir-877 - 17 B1|17 microRNA 877 ncRNA 668277 Gm9083 EG668277 - X|X A1.3 predicted gene 9083 pseudo 100503314 Gm15896 - - 9|9 44.88 cM predicted gene 15896 pseudo 434031 Igkv10-95 EG434031|Gm5573|Vk10c - 6|6 C1 immunoglobulin kappa variable 10-95 other 70423 Mm.416781 NM_197996 ENSMUSG00000037031 Tspan15 1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15 - 10|10 B4 tetraspanin 15 protein-coding 21167 T(3;14)28Ad T28Ad - - reciprocal translocation, Chr 3 and 14, Adler 28 other 117160 Mm.271934 NM_053273 ENSMUSG00000034714 Ttyh2 1110001A03Rik - 11|11 E2 tweety family member 2 protein-coding 110120414 LOC110120414 - - - VISTA enhancer mm988 biological-region 74230 Mm.271247 NM_198637 ENSMUSG00000053783 1700016K19Rik Liat1 - 11|11 B5 RIKEN cDNA 1700016K19 gene protein-coding 102632483 XM_017315290 Gm17330 - - 12 A1.3|12 8.46 cM predicted gene, 17330 protein-coding 110120453 LOC110120453 - - - VISTA enhancer mm1087 biological-region 100039959 Gm10566 - - 1|1 A3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100035060 Lgaq2 - - - late growth adjusted QTL 2 unknown 667143 Gm8480 EG667143 - Y|Y A1 predicted gene 8480 pseudo 102636897 XR_386890 Gm33844 - - X A1.1|X predicted gene, 33844 ncRNA 69870 Mm.292739 NM_027241 ENSMUSG00000028104 Polr3gl 2010003I19Rik - 3|3 F2.1 polymerase (RNA) III (DNA directed) polypeptide G like protein-coding 360064 D17Jcs31 - - - DNA segment, Chr 17, John C. Schimenti 31 unknown 232811 Mm.247844 NM_146177 ENSMUSG00000059851 Kmt5c BC024816|Suv4-20h2|Suv420h2 - 7|7 A1 lysine methyltransferase 5C protein-coding 676914 Mm.228502 NR_037189 ENSMUSG00000070465 Gm9696 - - 3|3 D arylacetamide deacetylase-like 2 pseudogene pseudo 192652 Mm.340378 NM_138950 ENSMUSG00000045374 Wdr81 BC054822|Gm883|mFLJ00182|nur5 - 11|11 B5 WD repeat domain 81 protein-coding 631621 Gm7071 - - X|X A6 predicted gene 7071 pseudo 100036091 Scpro11 - - X 57.4 cM Stem cell proliferation 11 unknown 21078 T(13;17)1Lub T1Lub - - reciprocal translocation, Chr 13 and 17, Lubeck 1 other 245446 Mm.101707 NM_178740 ENSMUSG00000046699 Slitrk4 6430513G13|D930039I09Rik - X|X A7.1 SLIT and NTRK-like family, member 4 protein-coding 110530 Prdx2-rs7 - - - peroxiredoxin 2, related sequence 7 protein-coding 723917 NR_030262 ENSMUSG00000076063 Mir539 Mirn539|mir-539|mmu-mir-539 - 12 F1|12 microRNA 539 ncRNA 108168696 XR_001782982 Gm46721 - - 6 G3|6 predicted gene, 46721 ncRNA 71585 Mm.381338 9130403I23Rik - - 3|3 RIKEN cDNA 9130403I23 gene protein-coding 69256 Mm.218343 NM_027007 ENSMUSG00000024276 Zfp397 2810411K16Rik|6720480F11Rik|AI461664 - 18|18 A2 zinc finger protein 397 protein-coding 100040724 Mm.260543 NR_028265 ENSMUSG00000097391 Mirg 2810474H01Rik|AI852992|Gm2928|Meg9|mir-410 - 12 F1|12 miRNA containing gene ncRNA 258895 Mm.377738 NM_146893 ENSMUSG00000075107 Olfr1216 MOR233-9 - 2|2 E1 olfactory receptor 1216 protein-coding 333433 Mm.38198 NM_175380 ENSMUSG00000050627 Gpd1l 2210409H23Rik|D9Ertd660e - 9 F3|9 65.47 cM glycerol-3-phosphate dehydrogenase 1-like protein-coding 27841 119L04aR - - - DNA segment, 119L04aR (Research Genetics) unknown 252905 Mm.377264 NM_145843 ENSMUSG00000095430 Vmn1r72 V1rg1 - 7|7 A1 vomeronasal 1 receptor 72 protein-coding 319583 Mm.80584 NM_176953 ENSMUSG00000049717 Lig4 5830471N16Rik|tiny - 8|8 A1.1 ligase IV, DNA, ATP-dependent protein-coding 76653 Cby3 1700121K02Rik - 11|11 B1.3 chibby family member 3 protein-coding 24060 Mm.281885 NM_011895 ENSMUSG00000028293 Slc35a1 AA408150|AI314851 - 4|4 A5 solute carrier family 35 (CMP-sialic acid transporter), member 1 protein-coding 12554 Mm.334841 NM_019707 ENSMUSG00000031841 Cdh13 4932416G01Rik|Cdht|Tcad - 8 E1|8 65.97 cM cadherin 13 protein-coding 67826 Mm.26680 NM_144521 ENSMUSG00000009894 Snap47 1110031B06Rik|SNAP-47 - 11|11 B1.3 synaptosomal-associated protein, 47 protein-coding 105245198 XR_871807 Gm40684 - - 10 B5.3|10 predicted gene, 40684 ncRNA 619833 Ighv1-69 Gm16708 - 12|12 F2 immunoglobulin heavy variable 1-69 other 100503474 Mm.428276 NR_037986 Platr22 Gm16880 - 1 E4|1 59.95 cM pluripotency associated transcript 22 ncRNA 105243177 Mm.114690 XR_001778549 ENSMUSG00000110179 Gm39168 Gm45256 - 8 B1.1|8 predicted gene, 39168 ncRNA 12898 cpy - - - crimpy unknown 105244379 Gm39998 - - 2|2 predicted gene, 39998 ncRNA 69981 Mm.486324 NM_133718 ENSMUSG00000032328 Tmem30a 2010200I23Rik|AW540225|Cdc50a|D9Wsu20e - 9 E1|9 43.82 cM transmembrane protein 30A protein-coding 21826 Mm.26688 NM_011581 ENSMUSG00000023885 Thbs2 TSP2|Thbs-2 - 17 A2|17 8.95 cM thrombospondin 2 protein-coding 320734 Mm.321046 NM_177247 C920008G01Rik TRAV7D-6 - 14|14 C2 RIKEN cDNA C920008G01 gene other 212996 Mm.299204 NM_145218 ENSMUSG00000034040 Wbscr17 AA388321|E330012B09Rik|Galnt17 - 5|5 G2 Williams-Beuren syndrome chromosome region 17 homolog (human) protein-coding 77278 9430024C03Rik - - 10|10 C1 RIKEN cDNA 9430024C03 gene protein-coding 319691 Mm.397130 D430022A14Rik - - 14|14 RIKEN cDNA D430022A14 gene protein-coding 100039332 XR_376635 Gm2164 Gm27247 - 4 D2.2|4 predicted gene 2164 unknown 666731 Mm.446951 NM_001177858 ENSMUSG00000067399 Trim43c EG666731|Trim43 - 9|9 E3.1 tripartite motif-containing 43C protein-coding 102467535 n-TGtcc1 n-Tg20 - 1 H3|1 nuclear encoded tRNA glycine 1 (anticodon TCC) tRNA 666305 Gm15526 EG666305 - 6 B3|6 predicted gene 15526 pseudo 257780 Olfr442-ps1 EG257780|GA_x5J8B7W6337-1183223-1183810|Gm5007 - 6 B2.1|6 olfactory receptor 442, pseudogene 1 pseudo 102637719 Mm.487755 XR_872112 Gm38500 - - 10 D2|10 predicted gene, 38500 ncRNA 258744 Mm.347661 NM_146749 ENSMUSG00000058628 Olfr875 MOR161-4 - 9|9 A4 olfactory receptor 875 protein-coding 100034842 Tbbmd2 - - 2 59.34 cM total body bone mineral density 2 unknown 258612 Mm.377593 NM_146619 ENSMUSG00000039608 Olfr303 MOR104-2 - 7|7 D3 olfactory receptor 303 protein-coding 72046 Mm.271657 NM_178623 ENSMUSG00000049680 Urgcp 2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507 - 11|11 A1 upregulator of cell proliferation protein-coding 96974 C78895 - - - expressed sequence C78895 unknown 15273 Mm.42157 NM_010437 ENSMUSG00000015501 Hivep2 Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2 - 10|10 A2 human immunodeficiency virus type I enhancer binding protein 2 protein-coding 100036480 Fibrs2 - - - fibrosarcoma susceptibility 2 unknown 620915 Gm6190 EG620915 - 12|12 D2 CDK5 and Abl enzyme substrate 2 pseudogene pseudo 26424 Mm.16794 NM_030676 ENSMUSG00000026398 Nr5a2 AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B - 1 59.98 cM|1 E4 nuclear receptor subfamily 5, group A, member 2 protein-coding 102638544 XR_383952 Gm35081 - - 15 B3.1|15 predicted gene, 35081 ncRNA 107142 AI266966 - - - expressed sequence AI266966 unknown 68262 Mm.258300 NM_026644 ENSMUSG00000023827 Agpat4 1500003P24Rik - 17|17 A1 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) protein-coding 112154 Skts1 - - 7 33.37 cM skin tumor susceptibility 1 unknown 24018 Mm.240024 NM_011884 ENSMUSG00000028274 Rngtt AU020997|HCE|MCE1 - 4|4 A5 RNA guanylyltransferase and 5'-phosphatase protein-coding 102631707 Gm29977 - - 7|7 predicted gene, 29977 pseudo 231727 Mm.484068 NM_198611 ENSMUSG00000029431 B3gnt4 1010001G17Rik|BGnT-4 - 5|5 F UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 protein-coding 105246981 XR_880614 Gm42169 - - X A2|X predicted gene, 42169 ncRNA 68281 Mm.268474 NM_175128 ENSMUSG00000046567 4930430F08Rik 4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik - 10|10 D1 RIKEN cDNA 4930430F08 gene protein-coding 384895 Gm5361 EG384895 - 8|8 D1 predicted gene 5361 pseudo 18113 Mm.8362 NM_010924 ENSMUSG00000032271 Nnmt - - 9 A5.3|9 26.45 cM nicotinamide N-methyltransferase protein-coding 20344 Mm.3337 NM_011347 ENSMUSG00000026580 Selp CD62P|GMP-140|Grmp|LECAM3|PADGEM - 1 H2.2|1 71.42 cM selectin, platelet protein-coding 109858 H61 - - - histocompatibility 61 protein-coding 100041605 Mm.99350 NR_030730 ENSMUSG00000098705 Gm3428 - - 9 A4|9 predicted gene 3428 ncRNA 235459 Mm.293117 NM_199151 ENSMUSG00000033543 Gtf2a2 TFIIA-gamma|TfIIg|Tfiia2 - 9|9 D general transcription factor II A, 2 protein-coding 66705 Mm.29017 NM_025718 ENSMUSG00000024136 Dnase1l2 4733401H14Rik - 17|17 A3.3 deoxyribonuclease 1-like 2 protein-coding 68277 Mm.121122 NM_026655 ENSMUSG00000040177 2310057M21Rik 3110040E10Rik|AI429544 - 7|7 F3 RIKEN cDNA 2310057M21 gene protein-coding 68703 Mm.291274 NM_001085492 ENSMUSG00000039852 Rere 1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye|eyes3|mKIAA0458 - 4 E2|4 81.34 cM arginine glutamic acid dipeptide (RE) repeats protein-coding 105242985 XR_869761 Gm39043 Gm44529 - 7 D3|7 predicted gene, 39043 ncRNA 61495 D7Mit200 - - 7 45.5 cM DNA segment, Chr 7, Massachusetts Institute of Technology 200 unknown 667488 Gm270 - - 13|13 A5 predicted gene 270 protein-coding 52356 D1Ertd507e - - 1 50.84 cM DNA segment, Chr 1, ERATO Doi 507, expressed unknown 108961 Mm.240566 NM_001013368 ENSMUSG00000046179 E2f8 4432406C08Rik|AA410048 - 7|7 B4 E2F transcription factor 8 protein-coding 21278 T(8;16)17H T17H - - reciprocal translocation, Chr 8 and 16, Harwell 17 other 232973 Mm.189648 NM_182785 ENSMUSG00000062732 Lypd4 4933400F01Rik - 7|7 A3 Ly6/Plaur domain containing 4 protein-coding 668844 NM_001100613 Gm9396 EG668844 - 3|3 G3 predicted gene 9396 pseudo 71855 1700015O11Rik - - 6|6 RIKEN cDNA 1700015O11 gene protein-coding 257981 Olfr680-ps1 MOR40-10P - 7|7 E3 olfactory receptor 680, pseudogene 1 pseudo 66066 Mm.25547 NM_025331 ENSMUSG00000032766 Gng11 0610037B21Rik - 6|6 A1 guanine nucleotide binding protein (G protein), gamma 11 protein-coding 18997 Mm.234261 NM_138944 ENSMUSG00000031688 Pou4f2 Brn-3.2|Brn-3b|Brn3b|Pou4f-rs1|mBrn3-3R - 8|8 C1 POU domain, class 4, transcription factor 2 protein-coding 110179 Igh-Pc - - - immunoglobulin heavy chain Pc other 78478 Mm.391317 NM_030106 ENSMUSG00000060726 Tmsb15a 1700129I15Rik|Tb15a|Tmsbl1|Tmsl8 - X|X F1 thymosin beta 15a protein-coding 100035875 Wbcq2 - - - white blood cell QTL 2 unknown 407243 Mm.4863 NM_145538 ENSMUSG00000090213 Tmem189 AI840826|Kua - 2|2 H3 transmembrane protein 189 protein-coding 628189 Gm6853 EG628189 - 8|8 A3 testis expressed gene 24 pseudogene pseudo 100502733 Mm.482635 Gm19344 - - 5|5 55.99 cM predicted gene, 19344 unknown 72523 Mm.37796 2700005E23Rik - - 14|14 RIKEN cDNA 2700005E23 gene protein-coding 109929 Mm.41880 NM_028356 ENSMUSG00000056459 Zbtb25 2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50 - 12 C3|12 33.73 cM zinc finger and BTB domain containing 25 protein-coding 109499 Alcp12 - - 7 70.29 cM alcohol preference locus 12, male specific unknown 16735 L1Md-Tf29 - - - L1 repeat, Tf subfamily, member 29 other 61143 D9Mit346 - - 9 52.66 cM DNA Segment, Chr 9 Massachusetts Institute of Technology 346 unknown 100035241 Mtxe5 - - - methotrexate efficacy 5 unknown 258781 Mm.223210 NM_146785 ENSMUSG00000057444 Olfr915 MOR167-4 - 9|9 A5.1 olfactory receptor 915 protein-coding 77719 6030458A19Rik - - 14|14 RIKEN cDNA 6030458A19 gene protein-coding 353235 Mm.308500 NM_201243 ENSMUSG00000103800 Pcdha8 - - 18|18 B2-B3 protocadherin alpha 8 protein-coding 102633143 XR_378818 Gm31045 - - 8 A2|8 predicted gene, 31045 ncRNA 105242945 XR_001778131 Gm39016 - - 7 B5|7 predicted gene, 39016 ncRNA 71100 Mm.414841 NR_045508 ENSMUSG00000079048 4933413L06Rik - - 13|13 D2.3 RIKEN cDNA 4933413L06 gene ncRNA 668432 Gm1826 - - 2|2 D synovial sarcoma translocation, Chromosome 18 pseudogene pseudo 102634387 XR_373223 Gm31982 - - 1 A3|1 predicted gene, 31982 ncRNA 110806304 Timm29-ps1 - - 9|9 translocase of inner mitochondrial membrane 29, pseudogene 1 pseudo 74405 Mm.248531 NM_028916 ENSMUSG00000025038 Efhc2 4933407D04Rik|mRib72-2 - X|X A1.2 EF-hand domain (C-terminal) containing 2 protein-coding 237711 Mm.445271 NM_146016 ENSMUSG00000044072 Eml6 2900083P10Rik|C230094A16Rik|EMAP-6 - 11|11 A3.3 echinoderm microtubule associated protein like 6 protein-coding 387145 NR_029541 ENSMUSG00000065540 Mir126a Mir126|Mirn126|mir-126a|mmu-mir-126|mmu-mir-126a - 2|2 A3 microRNA 126a ncRNA 102631955 XR_382651 Gm30154 - - 13 C1|13 predicted gene, 30154 ncRNA 664889 Gm7390 EG664889 - 9 A1|9 transcription factor Dp 1 pseudogene pseudo 102642117 LOC102642117 - - - A-kinase anchor protein 4 protein-coding 108355 Grr - - - growth and reproductive region other 71840 Mm.282330 NM_027951 ENSMUSG00000024175 Tekt4 1700010L19Rik - 17|17 A3.3 tektin 4 protein-coding 105245459 XR_873225 ENSMUSG00000113998 Gm40909 - - 13 A3.3|13 predicted gene, 40909 ncRNA 17261 Mm.28184 NM_133665 ENSMUSG00000001419 Mef2d C80750 - 3 F1|3 38.78 cM myocyte enhancer factor 2D protein-coding 108168568 XM_017318771 LOC108168568 - - Y C2 Y-linked testis-specific protein 1-like protein-coding 13010 Mm.4263 NM_009976 ENSMUSG00000027447 Cst3 CysC - 2 G3|2 73.6 cM cystatin C protein-coding 67472 Mm.45125 NM_026182 ENSMUSG00000027601 Mtfr1 1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2 - 3|3 A2 mitochondrial fission regulator 1 protein-coding 108472 Ms4 MMS4 - - minisatellites detected by probe MMS4 other 110324 Bis3 - - - beta-carboline-induced seizures 3 unknown 652989 Rpl32p L32-4A - X|X ribosomal protein L32 pseudogene pseudo 208718 Mm.389152 NM_153530 ENSMUSG00000053333 Dis3l2 4930429A22Rik|8030493P09Rik - 1|1 C5 DIS3 like 3'-5' exoribonuclease 2 protein-coding 102640655 XR_377358 ENSMUSG00000107022 Gm36669 - - 6 A2|6 predicted gene, 36669 ncRNA 268878 Mm.9823 NM_175650 ENSMUSG00000048939 Atp13a5 C630015F21Rik - 16|16 B2 ATPase type 13A5 protein-coding 353325 Mm.377892 NM_207020 ENSMUSG00000071149 Tas2r115 T2R15|Tas2r15|mGR15|mt2r49 - 6 G1|6 64.03 cM taste receptor, type 2, member 115 protein-coding 102631993 Mm.451980 XR_377865 LOC102631993 - - 6 D1 uncharacterized LOC102631993 ncRNA 19403 Rare1 - - - retinoic acid response element 1 other 100417743 Gm18798 - - Y|Y A1 ubiquitin-activating enzyme E1, Chr Y 1 pseudogene pseudo 71021 Mm.434725 4933403J19Rik - - - RIKEN cDNA 4933403J19 gene protein-coding 72308 Mm.196721 NM_028193 ENSMUSG00000011158 Brf1 2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90 - 12|12 F1 BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit protein-coding 112317 Bwefm - - 5 64.81 cM body weight females and males day 10 unknown 14628 Mm.46636 NM_172416 ENSMUSG00000038280 Ostm1 1200002H13Rik|HSPC019|gl - 10 B2|10 22.89 cM osteopetrosis associated transmembrane protein 1 protein-coding 100504164 Mm.443302 NM_181990 ENSMUSG00000110430 Cmtm1 CHLFH1a|CKLFH|CKLFH1|Cklfsf1 - 8|8 D3 CKLF-like MARVEL transmembrane domain containing 1 protein-coding 102467362 n-TFgaa4 n-Tf4 - 13 A2|13 nuclear encoded tRNA pheylalanine 4 (anticodon GAA) tRNA 100035631 Gnf2 - - - growth and fatness 2 unknown 100504157 Gm20091 - - 10 C3|10 49.8 cM cytochrome c oxidase, subunit VIIc pseudogene pseudo 108168783 XR_001783434 Gm46756 - - 2 E4|2 predicted gene, 46756 ncRNA 14544 Mm.45054 NM_010266 ENSMUSG00000058624 Gda AU015411|AW047581|GAH - 19 B|19 14.32 cM guanine deaminase protein-coding 102636878 Gm33828 - - 7 F1|7 predicted gene, 33828 pseudo 74394 Mm.159185 4932441P12Rik - - 12|12 RIKEN cDNA 4932441P12 gene protein-coding 433375 Mm.294885 NM_011804 ENSMUSG00000040713 Creg1 AA755314|Creg - 1|1 H2.3 cellular repressor of E1A-stimulated genes 1 protein-coding 102639209 XR_384456 Gm35569 - - 15 F1|15 predicted gene, 35569 ncRNA 52203 D9Ertd306e - - - DNA segment, Chr 9, ERATO Doi 306, expressed unknown 102638159 XR_387591 Gm13790 - - 5 F|5 55.99 cM predicted gene 13790 ncRNA 224079 Mm.54954 NM_172613 ENSMUSG00000038094 Atp13a4 4631413J11Rik|4832416L12|9330174J19Rik - 16|16 B2 ATPase type 13A4 protein-coding 102640546 XR_383604 Gm36583 - - 14 D3|14 predicted gene, 36583 ncRNA 100040223 Mm.387262 NM_001103152 ENSMUSG00000094325 Gm20831 - - Y|Y A1 predicted gene, 20831 protein-coding 625342 Mm.484784 NR_028497 Gm13315 - - 2|2 A2 lactate dehydrogenase A pseudogene pseudo 100416368 Gm18074 - - 14|14 E2.1 predicted gene, 18074 pseudo 100417855 Gm8775 EG667709 - 3|3 A1 heterogeneous nuclear ribonucleoprotein H2 pseudogene pseudo 105245691 XR_874387 Gm17030 - - 14 A3|14 10.45 cM predicted gene 17030 ncRNA 100036105 Impbw1 Bmq3 - - imprinted body weight QTL 1 unknown 108169129 XR_001785192 Gm46950 - - 6 A1|6 predicted gene, 46950 ncRNA 94069 Ms10o MMS10-O - 14|14 minisatellite 10o detected by probe MMS10 other 61613 D9Mit227 - - 9 23.36 cM DNA segment, Chr 9, Massachusetts Institute of Technology 227 unknown 78892 Mm.264680 NM_030209 ENSMUSG00000031825 Crispld2 1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp - 8|8 E1 cysteine-rich secretory protein LCCL domain containing 2 protein-coding 97752 C86687 - - - expressed sequence C86687 unknown 330635 Mm.68610 3830612M24 - - 7|7 F1 uncharacterized protein 3830612M24 protein-coding 100126591 Gm17792 - - 14|14 C2 glutamate oxaloacetate transaminase 2, mitochondrial pseudogene pseudo 72759 Mm.208477 NM_028343 ENSMUSG00000039428 Tmem135 2810439K08Rik|AW319712|PMP52 - 7|7 D3 transmembrane protein 135 protein-coding 61071 D2Mit360 - - 2 10.8 cM DNA segment, Chr 2, Massachusetts Institute of Technology 360 unknown 93743 Ear-ps2 - - 14 C1|14 eosinophil-associated, ribonuclease A family, pseudogene 2 pseudo 78889 Mm.307022 NM_019653 ENSMUSG00000017677 Wsb1 1110056B13Rik|2700038M07Rik - 11|11 B5 WD repeat and SOCS box-containing 1 protein-coding 102638077 XR_388952 Gm34726 - - 11 C|11 predicted gene, 34726 ncRNA 98582 Mm.326336 NM_001113187 ENSMUSG00000085079 Khdc1b AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c - 1|1 A4 KH domain containing 1B protein-coding 100035226 Bodw1 - - - body weight 1 unknown 100039693 Gm20812 - - Y|Y predicted gene, 20812 protein-coding 111871 Iap3ra9 - - - intracisternal A-type particle, U3 region, SINE repeat a-9 other 93893 Mm.348054 NM_053147 ENSMUSG00000073591 Pcdhb22 Pcdhb15|PcdhbV - 18|18 B3 protocadherin beta 22 protein-coding 546500 Rpl9-ps3 Gm12211 - 11|11 B1.3 ribosomal protein L9, pseudogene 3 pseudo 105247131 XR_881270 Gm42286 - - 4 B1|4 predicted gene, 42286 ncRNA 492944 Aibl - - - adiposity index and body length unknown 17879 Mm.477065 NM_030679 ENSMUSG00000056328 Myh1 A530084A17Rik|IId|IId/x|MHC-2X/D|MHC2X/D|MYHC-IIX|MdMs|MyHC-IId/x|MyHC-IIx/d|Myhs-f|Myhs-f2|Myhsf2 - 11 B3|11 40.59 cM myosin, heavy polypeptide 1, skeletal muscle, adult protein-coding 546854 XR_868232 Gm5984 EG546854 - 5|5 A1 predicted gene 5984 ncRNA 99031 Mm.240435 NM_145525 ENSMUSG00000042359 Osbpl6 1110062M20Rik|AI596402|ORP-6|mKIAA4128 - 2|2 C3 oxysterol binding protein-like 6 protein-coding 67770 Mm.35170 NM_026368 ENSMUSG00000028578 Caap1 5830433M19Rik|AI536248|CAAP - 4|4 C5 caspase activity and apoptosis inhibitor 1 protein-coding 100036118 Etax10 - - 11 78.74 cM ethanol induced ataxia 10 unknown 96913 C85133 - - - expressed sequence C85133 unknown 245902 Mm.390150 NM_001081429 ENSMUSG00000034303 Ccdc15 A630039F14Rik|D030074L19 - 9|9 A4 coiled-coil domain containing 15 protein-coding 100628581 NR_039563 ENSMUSG00000093060 Mir5104 mir-5104|mmu-mir-5104|mu-mir-5104 - 10 A1|10 2.45 cM microRNA 5104 ncRNA 100043679 Gm4585 - - 7|7 F3 U1 small nuclear ribonucleoprotein 1C pseudogene pseudo 105180388 A130047H01Rik - - - Riken cDNA A130047H01 gene protein-coding 97875 C79329 - - - expressed sequence C79329 unknown 100417169 Gm13566 - - 2|2 C1.2 TBC1 domain family, member 15 pseudogene pseudo 102641103 Gm38532 - - 11|11 predicted gene, 38532 ncRNA 11752 Mm.3267 NM_013473 ENSMUSG00000021950 Anxa8 AI466995|Anx8 - 14 B|14 20.8 cM annexin A8 protein-coding 100418180 Gm19057 - - 1|1 H2.1 guanosine diphosphate (GDP) dissociation inhibitor 1 pseudogene pseudo 69372 Mm.482182 NM_001160330 ENSMUSG00000074576 Mocs3 1700020H17Rik|Uba4 - 2|2 H3 molybdenum cofactor synthesis 3 protein-coding 69693 Mm.34964 NM_181579 ENSMUSG00000034607 Pof1b 2310066B14Rik - X|X E1 premature ovarian failure 1B protein-coding 100504525 Mm.87065 NR_037989 ENSMUSG00000100684 Gm20268 - - 1 E1.1|1 49.26 cM predicted gene, 20268 ncRNA 100035923 Cfmq3 - - 10 66.75 cM cystic fibrosis modifier QTL 3 unknown 15165 Mm.343429 NM_010408 ENSMUSG00000021730 Hcn1 Bcng1|C630013B14Rik|HAC2 - 13 D2.3|13 66.34 cM hyperpolarization-activated, cyclic nucleotide-gated K+ 1 protein-coding 99934 AW743297 - - - expressed sequence AW743297 unknown 15079 H3f3a-ps1 H3mm16 - X|X D H3 histone, family 3A, pseudogene 1 pseudo 277146 Trav6d-4 Gm1796|Gm25|Gm291|Gm701 - 14|14 C2 T cell receptor alpha variable 6D-4 other 105243198 XR_870475 Gm39185 Gm45825 - 8 B3.1|8 predicted gene, 39185 ncRNA 111318 Hmgn2-rs19 Hmg17-rs19 - - high mobility group nucleosomal binding domain 2, related sequence 19 pseudo 73877 Mm.399172 NR_045953 ENSMUSG00000115727 4930432J09Rik - - 14|14 E2.3 RIKEN cDNA 4930432J09 gene ncRNA 105243311 XR_879285 Gm39269 - - 8 E1|8 predicted gene, 39269 ncRNA 117004 Mm.196680 NM_054090 ENSMUSG00000075140 Olfr73 MOR174-9|fascin-1|mOR-EG - 2|2 D olfactory receptor 73 protein-coding 105242681 Gm38831 - - 6|6 predicted gene, 38831 ncRNA 76928 Mm.443261 1700015C17Rik - - 3|3 RIKEN cDNA 1700015C17 gene protein-coding 100418307 Gm19132 - - 19|19 A GTPase activating protein (SH3 domain) binding protein 2 pseudogene pseudo 102676 Mm.335039 AU022048 - - - expressed sequence AU022048 unknown 30865 C78513 - - - EST C78513 protein-coding 100417545 Gm18679 - - 17|17 C Ewing sarcoma breakpoint region 1 pseudogene pseudo 100416242 Gm17997 - - 8|8 D1 predicted gene, 17997 pseudo 71330 Mm.234195 NM_027764 ENSMUSG00000035469 Rcbtb1 5430409I18Rik|AW111883|CLLD7|CLLL7 - 14|14 C3 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 protein-coding 105348 Mm.171335 NM_027307 ENSMUSG00000021556 Golm1 2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257 - 13|13 B2 golgi membrane protein 1 protein-coding 70358 Mm.85429 NM_027399 ENSMUSG00000015652 Steap1 2410007B19Rik|Prss24|Steap - 5 A1|5 3.2 cM six transmembrane epithelial antigen of the prostate 1 protein-coding 100034967 Mp53d3 - - 19 45.06 cM modifier of p53-deficiency 3 unknown 109941 Sgp1 Sgp-1 - - serum gp70 production 1 protein-coding 270190 Mm.22897 NM_173447 ENSMUSG00000032537 Ephb1 9330129L11|AW488255|C130099E04Rik|Cek6|Elk|Elkh|Hek6|Net - 9|9 F1 Eph receptor B1 protein-coding 67381 Mm.282888 NM_026119 ENSMUSG00000022109 Med4 2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip - 14|14 D3 mediator complex subunit 4 protein-coding 53665 D7Mc1 D7McC1 - - DNA segment, Chr 7, McClelland 1 unknown 100417822 Gm14802 - - X|X C3 heterogeneous nuclear ribonucleoprotein M pseudogene pseudo 70753 Mm.490700 NR_045141 ENSMUSG00000108077 6330415B21Rik - - 6|6 C3 RIKEN cDNA 6330415B21 gene ncRNA 98754 Mm.404411 A630081D01Rik BB240235 - - RIKEN cDNA A630081D01 gene protein-coding 381944 Mm.334094 NM_201409 ENSMUSG00000062369 Usp17lb DUB-1A|Dub1a|USP17-B - 7|7 E3 ubiquitin specific peptidase 17-like B protein-coding 102639612 XR_385036 Gm35882 - - 16 C3.3|16 predicted gene, 35882 ncRNA 100046591 Gm17775 - - 3|3 F3 mortality factor 4 like 2 pseudogene pseudo 52182 D1Ertd148e - - - DNA segment, Chr 1, ERATO Doi 148, expressed unknown 28135 Mm.38910 NM_001081122 ENSMUSG00000032534 Cep63 4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2 - 9 F1|9 54.61 cM centrosomal protein 63 protein-coding 100417024 Hmgb3-ps Gm16543 - 14|14 A1 Hmgb3 retrotransposed pseudogene pseudo 22113 Mm.334344 NM_009434 ENSMUSG00000010760 Phlda2 Ipl|Tssc3 - 7 F5|7 88.23 cM pleckstrin homology like domain, family A, member 2 protein-coding 102636849 XR_001783525 Gm14170 - - 2 H1|2 77.39 cM predicted gene 14170 ncRNA 100504661 Mm.442322 NR_045057 ENSMUSG00000112880 Gm20337 - - 12 C3|12 37.2 cM predicted gene, 20337 ncRNA 61326 D3Mit183 - - 3 23.09 cM DNA segment, Chr 3, Massachusetts Institute of Technology 183 unknown 66996 Mm.36666 NM_023289 ENSMUSG00000030368 Ceacam11 1600015D01Rik - 7|7 A2 carcinoembryonic antigen-related cell adhesion molecule 11 protein-coding 105244557 XR_867638 Gm40150 - - 3 G3|3 predicted gene, 40150 ncRNA 62602 D13Mit136 - - 13 13.99 cM DNA segment, Chr 13, Massachusetts Institute of Technology 136 unknown 69103 1810015A16Rik - - 6|6 RIKEN cDNA 1810015A16 gene protein-coding 634104 Mm.259785 NM_001011780 ENSMUSG00000090129 Olfr287 MOR286-1 - 15|15 F1 olfactory receptor 287 protein-coding 102467265 n-TDgtc14 n-Td14 - 5 G1.1|5 nuclear encoded tRNA aspartic acid 14 (anticodon GTC) tRNA 17922 Mm.440013 NM_032394 ENSMUSG00000024388 Myo7b - - 18 B1|18 17.89 cM myosin VIIB protein-coding 240816 Mm.329340 NM_001243223 ENSMUSG00000042641 Rgsl1 4930415K13Rik|Gm202|Rgsl2 - 1|1 G3 regulator of G-protein signaling like 1 protein-coding 61719 D5Mit300 - - 5 29.8 cM DNA segment, Chr 5, Massachusetts Institute of Technology 300 unknown 100861901 Mm.441727 NM_001270642 ENSMUSG00000094144 Gm21312 - - 10 D1|10 predicted gene, 21312 protein-coding 102637723 Gm34461 - - 12|12 predicted gene, 34461 ncRNA 100036559 Pis1 - - - pilocarpine-induced seizures 1 unknown 171248 Mm.377204 NM_134214 ENSMUSG00000061829 Vmn1r214 V1rh5 - 13|13 A3.1 vomeronasal 1 receptor 214 protein-coding 80285 Mm.49074 NM_030253 ENSMUSG00000022906 Parp9 ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9 - 16|16 B3 poly (ADP-ribose) polymerase family, member 9 protein-coding 108168640 XM_017318849 LOC108168640 - - Y B X-linked lymphocyte-regulated protein PM1-like protein-coding 100862009 Gm21396 - - Y|Y predicted gene, 21396 protein-coding 665424 Gm7631 EG665424 - 5|5 E1 UDP glucuronosyltransferase 2 family, polypeptide B1 pseudogene pseudo 110219 Vas1 - - - autoimmune vasitis resistance 1 protein-coding 111832672 LOC111832672 - - - alpha fetoprotein (Afp) 5' regulatory region biological-region 104237 Apo - - - anterior polar opacity unknown 102640875 Gm28736 - - Y|Y predicted gene 28736 ncRNA 13321 Del(7)Tyr-p D7Ssb3Hp|Del(7)Tyrc-3H-p|Tyr - - deletion, Chr 7, Tyr c-3H, proximal other 639946 Klra27 Ly49e/c2 - - killer cell lectin-like receptor, subfamily A, member 27 protein-coding 102633261 XR_382570 Gm31128 - - 13 B3|13 predicted gene, 31128 ncRNA 19043 Mm.249695 NM_011151 ENSMUSG00000061130 Ppm1b PP2CB - 17 E4|17 55.13 cM protein phosphatase 1B, magnesium dependent, beta isoform protein-coding 78265 4632418H02Rik - - 9|9 RIKEN cDNA 4632418H02 gene protein-coding 117219 Ap3q - - 4 82.64 cM alcohol preference 3 QTL unknown 100043813 Mm.270283 NM_001190258 ENSMUSG00000050621 Rps27rt Gm9846|Rps27l2 - 9|9 F3 ribosomal protein S27, retrogene protein-coding 62314 D1Mit293 - - 1 97.55 cM DNA segment, Chr 1, Massachusetts Institute of Technology 293 unknown 105244972 Gm40490 - - 8|8 predicted gene, 40490 ncRNA 102634490 XR_391518 ENSMUSG00000108986 Gm32061 Gm45009 - 7 C|7 predicted gene, 32061 ncRNA 107769 Mm.221412 NM_145375 ENSMUSG00000038623 Tm6sf1 AI428514|BC023123|C630016D09Rik - 7|7 D3 transmembrane 6 superfamily member 1 protein-coding 382133 Mm.463885 NM_207162 ENSMUSG00000094575 Gm20738 - - Y|Y B predicted gene, 20738 protein-coding 780888 Ighv1-32 - - 12|12 F2 immunoglobulin heavy variable V1-32 pseudo 105244266 XR_866641 Gm39907 - - 2 E3|2 predicted gene, 39907 ncRNA 110546 Ptma-rs7 - - - prothymosin alpha, related sequence 7 protein-coding 100043859 Scgb1b21 Abpa21|Gm4695 - 7 B1|7 secretoglobin, family 1B, member 21 protein-coding 666451 Mm.390434 Gm8113 EG666451 - 14|14 C1 predicted gene 8113 other 100417585 Gm16581 - - 1|1 C1.2 serine/arginine repetitive matrix 2 pseudogene pseudo 639030 Gm7258 EG639030 - 7|7 F3 mitochondrial ribosomal protein S36 pseudogene pseudo 59126 Mm.143818 NM_021606 ENSMUSG00000026749 Nek6 1300007C09Rik - 2 B|2 24.41 cM NIMA (never in mitosis gene a)-related expressed kinase 6 protein-coding 69354 Mm.250980 NM_027052 ENSMUSG00000022464 Slc38a4 1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3 - 15|15 F1 solute carrier family 38, member 4 protein-coding 105242440 Gm38707 - - 3|3 predicted gene, 38707 ncRNA 105245186 Mm.390301 Gm28447 - - 10|10 predicted gene 28447 ncRNA 117172 Mm.160339 NM_054100 ENSMUSG00000068078 2310034C09Rik - - 16|16 C3.3 RIKEN cDNA 2310034C09 gene protein-coding 107086 AA409025 - - - expressed sequence AA409025 unknown 110283 Tir1 - - 17 17.98 cM trypanosome infection response 1 unknown 108686 Mm.338284 NM_176841 ENSMUSG00000032740 Ccdc88a A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1 - 11|11 A3.3 coiled coil domain containing 88A protein-coding 67092 Mm.29975 NM_025961 ENSMUSG00000027199 Gatm 1810003P21Rik|AI314789|AT - 2 E5|2 60.63 cM glycine amidinotransferase (L-arginine:glycine amidinotransferase) protein-coding 102635358 Mm.446684 LOC102635358 - - - uncharacterized LOC102635358 ncRNA 105244360 XR_866965 Gm39983 - - 2 H3|2 predicted gene, 39983 ncRNA 110234 Igh-Ns5 - - - immunoglobulin heavy chain Ns5 other 677168 XR_168557 Gm9706 - - 17 C|17 predicted gene 9706 unknown 16336 Mm.476857 NM_013564 ENSMUSG00000079019 Insl3 Rlf|Rlnl - 8 B3.3|8 34.43 cM insulin-like 3 protein-coding 56297 Mm.392505 NM_019665 ENSMUSG00000022722 Arl6 1110018H24Rik|2210411E14Rik|BBS3 - 16|16 C1.3 ADP-ribosylation factor-like 6 protein-coding 16790 Mm.4487 NM_008486 ENSMUSG00000039062 Anpep AP-M|AP-N|Apn|Cd13|P150 - 7|7 D2 alanyl (membrane) aminopeptidase protein-coding 100862323 XM_003688965 ENSMUSG00000093857 Btbd35f22 Gm21645 - X A3.1|X BTB domain containing 35, family member 22 protein-coding 258559 Mm.377568 NM_146566 ENSMUSG00000062868 Olfr830 MOR152-1 - 9|9 A2 olfactory receptor 830 protein-coding 74134 Mm.275188 NM_028775 ENSMUSG00000040703 Cyp2s1 1200011C15Rik|AU041727|C79779 - 7|7 A3 cytochrome P450, family 2, subfamily s, polypeptide 1 protein-coding 67030 Mm.18875 NM_025923 ENSMUSG00000004018 Fancl 2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd - 11|11 A3.3 Fanconi anemia, complementation group L protein-coding 61276 D2Mit244 - - - DNA segment, Chr 2, Massachusetts Institute of Technology 244 unknown 102633715 Mm.442357 XR_001783437 Gm31474 - - 2 E4|2 predicted gene, 31474 ncRNA 11354 Mm.8025 NM_009596 ENSMUSG00000066583 Scgb1b27 Abp|Abpa|Abpa27|Sal-1|Tcp - 7 B1|7 19.38 cM secretoglobin, family 1B, member 27 protein-coding 58188 Mm.150675 NM_021387 ENSMUSG00000039257 Vstm2b 2900093B09Rik|AB030198 - 7|7 B3 V-set and transmembrane domain containing 2B protein-coding 100035776 Cia27 - - - collagen induced arthritis QTL 27 unknown 19370 Mm.439724 NM_009018 Raet1c RAE-1gamma - 10|10 A3 retinoic acid early transcript gamma protein-coding 493007 Orgwq4 - - 3 12.7 cM organ weight QTL 4 unknown 102465896 NR_106185 ENSMUSG00000098922 Mir8106 Gm27594|mmu-mir-8106 - 9|9 F4 microRNA 8106 ncRNA 62037 D4Mit356 - - 4 83.1 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 356 unknown 100039221 Gm2108 - - 7|7 B3 predicted gene 2108 pseudo 78631 Mm.243738 NM_001177380 ENSMUSG00000079619 Cypt15 1700085A12Rik - X|X A3.3 cysteine-rich perinuclear theca 15 protein-coding 102641305 LOC102641305 - - 5 G2 40S ribosomal protein S2 pseudogene pseudo 100043166 Gm12517 - - 3|3 F3 predicted gene 12517 pseudo 105246899 XR_880382 Gm42100 - - X A3.1|X predicted gene, 42100 ncRNA 17940 Mm.6898 NM_008670 ENSMUSG00000021640 Naip1 AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1 - 13 D1|13 53.18 cM NLR family, apoptosis inhibitory protein 1 protein-coding 108168650 XM_017318861 LOC108168650 - - Y C3 Y-linked testis-specific protein 1-like protein-coding 654452 Mm.424928 NR_002878 Defa-ps12 Defb46-ps|EG654452 - 8 A1.3|8 defensin, alpha, pseudogene 12 pseudo 108169201 XM_017321889 Gm46988 - - 6 B1|6 predicted gene, 46988 protein-coding 13057 Mm.271671 NM_007806 ENSMUSG00000006519 Cyba b558|nmf333|p22-phox|p22phox - 8|8 E1 cytochrome b-245, alpha polypeptide protein-coding 100416273 Gm18014 - - 9|9 D ribosomal protein S2 pseudogene pseudo 102635628 XM_017312476 Gm32916 - - 7 F2|7 predicted gene, 32916 protein-coding 387221 NR_029531 ENSMUSG00000065475 Mir27b Mirn27b|mmu-mir-27b - 13|13 B3 microRNA 27b ncRNA 14727 Mm.439661 NM_008147 ENSMUSG00000112023 Lilr4b Gp49a|gp49 - 10|10 B3 leukocyte immunoglobulin-like receptor, subfamily B, member 4B protein-coding 29834 Del(11)10Brd - - - deletion, Chr 11, Bradley 10 other 100418416 Gm19197 - - 17|17 C FCF1 small subunit processome component homolog pseudogene pseudo 18473 Pafah1b1-ps1 Lis3|Mdsh3|Pafaha-ps1 - 3 F2.1|3 41.82 cM platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 1 pseudo 60846 D5Mit63 - - 5 71.21 cM DNA segment, Chr 5, Massachusetts Institute of Technology 63 unknown 102632456 Gm30523 - - 14|14 predicted gene, 30523 ncRNA 100038447 Mm.491518 Gm10729 - - - predicted gene 10729 unknown 56032 Mm.11337 NM_018879 ENSMUSG00000010057 Nprl2 2810446G01Rik|G21|NPR2L|Tusc4 - 9|9 F1 nitrogen permease regulator-like 2 protein-coding 102636046 Mm.229339 XR_379806 ENSMUSG00000099599 Gm28548 - - 9 F1|9 predicted gene 28548 ncRNA 17769 Mm.89959 NM_010840 ENSMUSG00000029009 Mthfr AI323986 - 4 E2|4 78.67 cM methylenetetrahydrofolate reductase protein-coding 102639356 XR_390022 LOC102639356 - - - uncharacterized LOC102639356 ncRNA 378460 Mm.272606 NM_001002842 ENSMUSG00000032739 Pram1 AY665714 - 17|17 B1 PML-RAR alpha-regulated adaptor molecule 1 protein-coding 243937 Mm.322505 NM_172385 ENSMUSG00000043456 Zfp536 9630010P11Rik|Znf536|mKIAA0390 - 7|7 B2-B3 zinc finger protein 536 protein-coding 105246568 Gm41841 - - 19|19 predicted gene, 41841 ncRNA 414081 Mm.246905 NR_029381 ENSMUSG00000086822 5330413P13Rik - - 2 F1|2 RIKEN cDNA 5330413P13 gene ncRNA 62005 D7Mit361 - - 7 82.32 cM DNA segment, Chr 7, Massachusetts Institute of Technology 361 unknown 100217440 NR_034046 Snora61 MBI-164 - 4 D2.3|4 small nucleolar RNA, H/ACA box 61 snoRNA 224432 Mm.439811 NM_178923 ENSMUSG00000022983 Scaf4 AA517739|Sfrs15|Sra4|Srsf15 - 16|16 C3.3 SR-related CTD-associated factor 4 protein-coding 102637140 XR_387995 Gm34026 - - 8 D3|8 predicted gene, 34026 ncRNA 62064 D10Mit34 - - 10 63.51 cM DNA segment, Chr 10, Massachusetts Institute of Technology 34 unknown 213056 Mm.26272 NM_172513 ENSMUSG00000038174 Fam126b C130065N10Rik|D1Ertd53e|D630010C10 - 1 C1.3|1 29.12 cM family with sequence similarity 126, member B protein-coding 109953 Map1 Map-1 - - mannosidase processing 1 protein-coding 100048057 Gm9830 - - 9|9 A5.2 family with sequence similarity 103, member A1 pseudogene pseudo 77628 4930544N03Rik - - 4|4 RIKEN cDNA 4930544N03 gene protein-coding 259033 Mm.377798 NM_147031 ENSMUSG00000047594 Olfr1122 MOR264-1 - 2|2 D olfactory receptor 1122 protein-coding 68206 Mm.219540 2900060N18Rik - - 11|11 RIKEN cDNA 2900060N18 gene protein-coding 16756 l7Rn2 l(7)-2Rn - - lethal, Chr 7, Rinchik 2 unknown 61689 D6Mit252 - - - DNA segment, Chr 6, Massachusetts Institute of Technology 252 unknown 77637 Mm.380633 C030044C18Rik - - 10|10 RIKEN cDNA C030044C18 gene protein-coding 100312499 Vmn1r-ps52 - - 7|7 A1 vomeronasal 1 receptor, pseudogene 52 pseudo 19622 Rb(8.17)6Sic Rb6Sic - - Robertsonian translocation, Chr 8 and 17, Sicily 6 other 69462 Mm.64338 NM_001081961 ENSMUSG00000075605 Slurp2 2300005B03Rik|SLURP-2 - 15|15 D3 secreted Ly6/Plaur domain containing 2 protein-coding 11846 Mm.154144 NM_007482 ENSMUSG00000019987 Arg1 AI|AI256583|Arg-1|PGIF - 10|10 A4 arginase, liver protein-coding 53993 D16Wis1 m595 - - DNA segment, Chr 16, Wisconsin 1 unknown 100041290 Mm.472885 NR_029469 D4Ertd617e - - 4 D2.1|4 54.97 cM DNA segment, Chr 4, ERATO Doi 617, expressed ncRNA 67168 Mm.390681 NM_175116 ENSMUSG00000033446 Lpar6 2610302I02Rik|P2ry5|P2y5 - 14|14 D3 lysophosphatidic acid receptor 6 protein-coding 61123 D3Mit351 - - 3 64.89 cM DNA Segment, Chr 3 Massachusetts Institute of Technology 351 unknown 27571 D5Buc11 337O19.SP6 - 5 37.53 cM DNA segment, Chr 5, Bucan 11 unknown 27217 Mm.103647 NM_013729 ENSMUSG00000026497 Mixl1 Mm1|Mml - 1|1 H4 Mix1 homeobox-like 1 (Xenopus laevis) protein-coding 102634544 XR_378841 Gm32098 Gm45585 - 8 A2|8 predicted gene, 32098 ncRNA 117586 Mm.291499 NM_001081067 ENSMUSG00000022347 A1bg C44 - 15|15 D1 alpha-1-B glycoprotein protein-coding 105242850 XR_881825 Gm38946 - - 7 A1|7 predicted gene, 38946 ncRNA 100035518 Gutl1 - - - gut length 1 unknown 237107 Mm.45987 NM_198110 ENSMUSG00000025266 Gnl3l BC020354 - X|X F3 guanine nucleotide binding protein-like 3 (nucleolar)-like protein-coding 61094 D1Mit476 - - 1 20.36 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 476 unknown 102640559 XR_876924 Gm36594 - - 17 E1.3|17 predicted gene, 36594 ncRNA 77251 9430020M11Rik - - 19|19 RIKEN cDNA 9430020M11 gene protein-coding 112296 Estq4 Est4 - 10 66.65 cM estradiol regulated response QTL 4 unknown 102636388 Gm33468 - - 5|5 predicted gene, 33468 ncRNA 102640945 XR_001782916 Gm36891 - - Y A2|Y predicted gene, 36891 ncRNA 101055944 LOC101055944 - - 5 A1 uncharacterized LOC101055944 pseudo 75135 Mm.476814 NR_015516 4930526I15Rik 1600027J15Rik - 9 F4|9 RIKEN cDNA 4930526I15 gene ncRNA 70427 Mm.334193 NM_027422 ENSMUSG00000042570 Mier2 2700087H15Rik|mKIAA1193 - 10|10 C1 MIER family member 2 protein-coding 112174 Daq9 - - 13 67.21 cM directional asymmetry QTL 9 unknown 102632979 Gm29061 - - Y|Y predicted gene 29061 ncRNA 11605 Mm.1114 NM_013463 ENSMUSG00000031266 Gla Ags - X E3|X 56.2 cM galactosidase, alpha protein-coding 100504556 Mm.381440 D5Ertd683e - - 5|5 81.92 cM DNA segment, Chr 5, ERATO Doi 683, expressed unknown 97827 Mm.206631 NM_133798 ENSMUSG00000032705 Exd2 4930539P14Rik|C85658|Exdl2 - 12|12 C3 exonuclease 3'-5' domain containing 2 protein-coding 102631674 XR_878523 Gm28913 Gm29953 - 1 E4|1 predicted gene 28913 ncRNA 18345 Mm.222839 NM_146934 ENSMUSG00000093942 Olfr46 IB7|ID12|IF5|MOR253-8 - 7|7 F4 olfactory receptor 46 protein-coding 320804 5830444F18Rik - - 17|17 RIKEN cDNA 5830444F18 gene protein-coding 53315 Mm.6824 NM_016771 ENSMUSG00000029273 Sult1d1 5033411P13Rik|AI987815|ST1d1|SULT-N|Sultn - 5|5 E1 sulfotransferase family 1D, member 1 protein-coding 105244795 Gm40343 - - 5|5 predicted gene, 40343 ncRNA 105244452 Gm40058 - - 3|3 predicted gene, 40058 ncRNA 71660 Mm.28231 NM_027852 ENSMUSG00000009281 Rarres2 0610007L05Rik|AI303516 - 6|6 B2.3 retinoic acid receptor responder (tazarotene induced) 2 protein-coding 13035 Mm.4858 NM_007800 ENSMUSG00000040314 Ctsg CatG|VSP - 14 C3|14 28.19 cM cathepsin G protein-coding 21326 T(X;7)5Rl T5Rl - - reciprocal translocation, Chr X and 7, Russell 5 other 258232 Mm.391464 NM_207620 ENSMUSG00000096229 Olfr774 MOR111-11|MOR111-2 - 10|10 D3 olfactory receptor 774 protein-coding 67123 Mm.289795 NM_023305 ENSMUSG00000028437 Ubap1 2700092A01Rik|NAG20|UBAP-1|Ubap - 4|4 A5 ubiquitin-associated protein 1 protein-coding 105246719 XR_878584 Gm41962 - - 1 E4|1 predicted gene, 41962 ncRNA 102633825 Mm.391216 XR_390002 Gm31556 - - X A3.1|X predicted gene, 31556 ncRNA 112227 Afpq10 - - - abdominal fat percent QTL 10 unknown 53328 Mm.9052 NM_016783 ENSMUSG00000006373 Pgrmc1 AA415812|HPR6.6|PPMR|Vema|mPR - X|X A3.3 progesterone receptor membrane component 1 protein-coding 105246299 XR_876882 Gm41603 - - 17 D|17 predicted gene, 41603 ncRNA 100415998 Gm15256 - - X|X A1.1 predicted gene 15256 pseudo 329239 Mm.403817 Gm29455 A330041K01 - 1|1 E2.3 predicted gene 29455 ncRNA 108169080 XR_001785007 Gm42808 - - 5 G2|5 predicted gene 42808 ncRNA 75274 Mm.108718 NR_045441 ENSMUSG00000086244 4930558G05Rik - - X|X E3 RIKEN cDNA 4930558G05 gene ncRNA 51889 D3Ertd343e - - - DNA segment, Chr 3, ERATO Doi 343, expressed unknown 171539 AF179939 431-21-102 - - DNA sequence AF179939 unknown 100416222 Gm17978 - - 5|5 E5 centromere protein N pseudogene pseudo 229227 Mm.207907 NM_172679 ENSMUSG00000037270 4932438A13Rik 4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek - 3|3 B RIKEN cDNA 4932438A13 gene protein-coding 235973 Mm.118804 NM_001033325 ENSMUSG00000070313 A630095E13Rik Gm191|Pate14|Sslp-1|Sslp1 - 9|9 A4 RIKEN cDNA A630095E13 gene protein-coding 100034360 Mm.101633 9330171B17Rik - - 7|7 D2 RIKEN cDNA 9330171B17 gene unknown 257954 Olfr1555-ps1 MOR0-15P|MOR202-43 - 19|19 A olfactory receptor 1555, pseudogene 1 pseudo 22147 Mm.270295 NM_009449 ENSMUSG00000067338 Tuba3b M[a]7|Tuba7 - 6|6 G3 tubulin, alpha 3B protein-coding 381707 Mm.159016 NR_033216 ENSMUSG00000042184 1700069L16Rik 1700096P12Rik - 5|5 F RIKEN cDNA 1700069L16 gene ncRNA 19225 Mm.292547 NM_011198 ENSMUSG00000032487 Ptgs2 COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs - 1 G1|1 63.84 cM prostaglandin-endoperoxide synthase 2 protein-coding 100036235 Cia5b Cia21 - - collagen induced arthritis QTL 5b unknown 100417137 Gm18418 - - 17|17 E1.1 predicted gene, 18418 pseudo 623459 Mm.260891 NM_001244762 ENSMUSG00000096316 Faiml EG623459|Gm6432 - 9|9 E3.3 Fas apoptotic inhibitory molecule like protein-coding 171195 Mm.389764 NM_134177 ENSMUSG00000095670 Vmn1r30 V1rc22|V1rc9 - 6|6 B3 vomeronasal 1 receptor 30 protein-coding 52717 Mm.21793 NM_025514 ENSMUSG00000020107 Anapc16 2310005G07Rik|APC16|D10Ertd641e - 10 B4|10 29.66 cM anaphase promoting complex subunit 16 protein-coding 61255 D2Mit136 - - 2 67.43 cM DNA segment, Chr 2, Massachusetts Institute of Technology 136 unknown 102638480 XR_375333 Gm35033 - - 2 H3|2 predicted gene, 35033 ncRNA 244886 Mm.24361 NM_172923 ENSMUSG00000032313 Tmem266 9630029F15|AI118078|HVRP1 - 9|9 B transmembrane protein 266 protein-coding 105247005 XR_880694 Gm42189 - - 3 A2|3 predicted gene, 42189 ncRNA 100417677 Gm18758 - - 7|7 A1 predicted gene, 18758 pseudo 675713 Gm17758 - - 12|12 hippocalcin-like protein 1-like pseudo 67695 Mm.21450 NM_024460 ENSMUSG00000038803 Ost4 2310016E02Rik - 5|5 B1 oligosaccharyltransferase complex subunit 4 (non-catalytic) protein-coding 70008 Mm.13451 NM_027286 ENSMUSG00000015405 Ace2 2010305L05Rik - X F5|X 76.12 cM angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 protein-coding 225152 Mm.119273 NM_153086 ENSMUSG00000036855 Gjd4 9430022F06Rik|Cx39 - 18|18 A1 gap junction protein, delta 4 protein-coding 78672 Mm.410765 XM_017313049 9530057J20Rik - - 8 A1.3|8 RIKEN cDNA 9530057J20 gene protein-coding 271375 Mm.441535 NM_206535 ENSMUSG00000090176 Cd200r2 AY230198|Cd200r1l - 16|16 B4-B5 Cd200 receptor 2 protein-coding 108168496 XR_001782873 LOC108168496 - - X A1.1 uncharacterized LOC108168496 ncRNA 102636022 Mm.436868 XR_374555 ENSMUSG00000085975 Gm13572 - - 2 C1.1|2 34.31 cM predicted gene 13572 ncRNA 107964 Pim1-rs2 Pim-1rs2 - - proviral integration site 1 related sequence 2 protein-coding 100126086 Lvwtq1 - - - liver weight QTL 1 unknown 100417515 Gm13396 - - 2|2 A3 ring finger and WD repeat domain 2 pseudogene pseudo 100038651 Mm.483765 D130062J21Rik - - 4 A4|4 RIKEN cDNA D130062J21 gene unknown 73172 Mm.151436 NM_028457 ENSMUSG00000028629 Exo5 3110037I16Rik|AV297100|Dem1|Exo V|mExo5 - 4|4 D2.2 exonuclease 5 protein-coding 105245538 XR_873600 Gm40983 - - 13 B3|13 predicted gene, 40983 ncRNA 102638573 Gm10477 - - X|X 30.06 cM predicted gene 10477 protein-coding 382053 Mm.295534 NM_198672 ENSMUSG00000069922 Ces3a Ces3|Ces31|Es31 - 8|8 D3 carboxylesterase 3A protein-coding 235302 Mm.135745 NM_001243261 D630033O11Rik Gm588 - 9|9 A5.1 RIKEN cDNA D630033O11 gene protein-coding 245516 Gm4990 EG245516 - X|X C3 family with sequence similarity 48, member A pseudogene pseudo 60791 D3Mit59 - - 3 79.05 cM DNA segment, Chr 3, Massachusetts Institute of Technology 59 unknown 100861634 Gm21092 - - 8 A2|8 cadherin 11 pseudogene pseudo 105246255 XR_876738 Gm41563 - - 17 B1|17 predicted gene, 41563 ncRNA 100039290 Gm2142 - - 3|3 G3 DCN1, defective in cullin neddylation 1, domain containing 2 pseudogene pseudo 328759 Mm.469839 NM_001102581 ENSMUSG00000091631 Vmn2r95 - - 17|17 A3.2 vomeronasal 2, receptor 95 protein-coding 14357 Mm.1645 NM_008052 ENSMUSG00000029603 Dtx1 Fxit1|mKIAA4160 - 5 F|5 60.64 cM deltex 1, E3 ubiquitin ligase protein-coding 102633435 Mm.489015 XR_871577 Gm26535 - - 10 B1|10 predicted gene, 26535 ncRNA 100418031 Gm18955 - - 12|12 F2 heterogeneous nuclear ribonucleoprotein A2/B1 pseudogene pseudo 100041588 Gm3418 - - 1 B|1 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene pseudo 73954 Mm.416923 4930431L21Rik - - 3|3 RIKEN cDNA 4930431L21 gene protein-coding 100462737 Gm19244 - - 6 B3|6 27.82 cM ribosomal protein S27 pseudogene pseudo 102636276 XR_387310 Gm33388 - - 1 E2.3|1 predicted gene, 33388 ncRNA 52095 D5H4S181E - - - DNA segment, Chr 5, human D4S181E, expressed unknown 623781 Mm.389344 NM_001039223 ENSMUSG00000055926 Gm14137 - - 2|2 E5 predicted gene 14137 protein-coding 105246448 Gm41737 - - 18|18 predicted gene, 41737 ncRNA 20753 Mm.331191 NM_009264 ENSMUSG00000050359 Sprr1a AI528815|SPR1a|mSPRR1A - 3 F1|3 40.14 cM small proline-rich protein 1A protein-coding 666771 Gm11620 - - 11|11 E1 predicted gene 11620 pseudo 105245842 XM_017316342 Gm41231 Gm45369 - 14 E2.3|14 predicted gene, 41231 protein-coding 493015 Skmw2 - - - skeletal muscle weight 2 unknown 53687 D1Lws2 D1Rti2 - - DNA segment, Chr 1, S. Lewis 2 unknown 109496 Nidd3 - - - non-insulin-dependent diabetes mellitus 3 unknown 105245908 Gm41288 - - 15|15 predicted gene, 41288 ncRNA 20085 Mm.300281 NM_023133 ENSMUSG00000040952 Rps19 Dsk3 - 7|7 A3 ribosomal protein S19 protein-coding 230789 Mm.11473 NM_145553 ENSMUSG00000028878 Fam76a - - 4|4 D2.3 family with sequence similarity 76, member A protein-coding 13647 Mm.439663 NM_010115 Egfbp2 Egfbp-2|Klk1b26|PRECE-1|mGk-13 - 7 B3|7 epidermal growth factor binding protein type B protein-coding 105246118 XR_876098 Gm41459 - - 16 B5|16 predicted gene, 41459 ncRNA 668215 Mm.394223 NR_033510 ENSMUSG00000087579 Hectd2os 1500017E21Rik - 19 C2|19 Hectd2, opposite strand ncRNA 102634080 Gm31749 - - 7|7 predicted gene, 31749 ncRNA 105247009 XR_880704 Gm42193 - - 3 A3|3 predicted gene, 42193 ncRNA 27719 D1Dau27 - - - DNA segment, Chr 1, DA Underhill 27 unknown 213570 Ighv1-78 Gm16812 - 12|12 F2 immunoglobulin heavy variable 1-78 other 111370 Cyp2d - - - cytochrome P450, 2d region other 23996 Mm.29582 NM_011874 ENSMUSG00000030603 Psmc4 CIP21|MIP224 - 7 A3|7 16.11 cM proteasome (prosome, macropain) 26S subunit, ATPase, 4 protein-coding 668771 Gm9347 EG668771 - 7 F3|7 3-phosphoglycerate dehydrogenase pseudogene pseudo 105246406 XR_877318 Gm41698 - - 18 B2|18 predicted gene, 41698 ncRNA 116927 Artles - - - arterial lesions unknown 668500 Gm9207 - - 3 F2.1|3 CCR4-NOT transcription complex, subunit 3 pseudogene pseudo 100504493 Mm.382101 XR_374278 Gm13605 - - 2 B|2 23.46 cM predicted gene 13605 ncRNA 108167711 XR_001779352 Gm46147 - - 9 E3.3|9 predicted gene, 46147 ncRNA 258477 Mm.377523 NM_146484 ENSMUSG00000109020 Olfr197 MOR183-3 - 16|16 C1.3 olfactory receptor 197 protein-coding 668899 Gm14044 - - 2|2 F1 ribosomal protein L27A pseudogene pseudo 61733 D4Mit290 - - 4 45.52 cM DNA segment, Chr 4, Massachusetts Institute of Technology 290 unknown 102639986 Mm.247304 XR_385041 Gm36169 - - 16 C3.3|16 predicted gene, 36169 ncRNA 27768 332I15.T7 - - - DNA segment, 332I15.T7 (Roswell Park) unknown 434285 Mm.334425 NM_001007591 ENSMUSG00000049008 BB014433 - - 8|8 A1.1 expressed sequence BB014433 ncRNA 105244435 XR_867208 Gm40043 - - 3 C|3 predicted gene, 40043 ncRNA 100503694 Gm19838 - - 8|8 A4 a disintegrin and metallopeptidase domain 26B pseudogene pseudo 102633357 LOC102633357 - - - uncharacterized LOC102633357 ncRNA 732519 Gt(pU21)11Imeg Ayu21-11|GtAyu21-11 - - gene trap 11, Institute of Molecular Embryology and Genetics unknown 105244509 XR_001783932 Gm40103 - - 3 F2.2|3 predicted gene, 40103 ncRNA 102637362 Gm34192 - - Y|Y predicted gene, 34192 protein-coding 100039243 Gm15066 - - X|X F2 eukaryotic translation elongation factor pseudogene pseudo 100418042 Gm12661 - - 11|11 B1.3 predicted gene 12661 pseudo 100039316 Gm9843 - - 16 C3.1|16 predicted gene 9843 pseudo 109750 Lamr9 - - - laminin receptor 9 protein-coding 19515 Rb(2.6)4Iem Rb4Iem - - Robertsonian translocation, Chr 2 and 6, Inst of Experimental Medicine Leningrad other 328190 Mm.446957 NR_046131 ENSMUSG00000113338 A530046M15Rik A530046M15 - 13|13 A1 RIKEN cDNA A530046M15 gene ncRNA 77684 Mm.190482 NM_001080942 ENSMUSG00000078800 Bsph2 9230107M04Rik|Bsph2a - 7|7 A1 binder of sperm protein homolog 2 protein-coding 53014 CA7.6 - - - DNA segment, CA7.6 unknown 100418149 Gm19035 - - 18|18 B2 heat shock transcription factor 2 binding protein pseudogene pseudo 553095 Mm.39702 NR_131220 ENSMUSG00000098087 Gm17750 - - 13 C3|13 43.99 cM predicted gene, 17750 ncRNA 105244949 Gm40471 - - 8|8 predicted gene, 40471 protein-coding 105246537 XR_877742 Gm41811 - - 19 A|19 predicted gene, 41811 ncRNA 20768 Mm.20294 NM_009266 ENSMUSG00000049091 Sephs2 Sps2|Ysg3 - 7 F3|7 69.43 cM selenophosphate synthetase 2 protein-coding 23805 Mm.57247 NM_011789 ENSMUSG00000020135 Apc2 AI852447|APCL|R75424 - 10|10 C1 adenomatosis polyposis coli 2 protein-coding 622052 XM_886462 Frg2f8 EG622052|Gm6280 - 14|14 E4 FSHD region gene 2 family member 8 protein-coding 20657 Mm.2407 NM_011435 ENSMUSG00000072941 Sod3 AI314465|EC-SOD - 5 C1|5 27.92 cM superoxide dismutase 3, extracellular protein-coding 108432 Xmmv48 Xmmv-48|Xp-7 - - xenotropic-MCF leukemia virus 48 other 102638732 Gm35226 - - 2|2 predicted gene, 35226 ncRNA 629945 Mm.447551 XR_880275 Cep112it Cep112os2|Gm11669 - 11|11 E1 centrosomal protein 112, intronic transcript ncRNA 19533 Rb(3.9)12Lub Rb12Lub - - Robertsonian translocation, Chr 3 and 9, Lubeck 12 other 101055811 LOC101055811 - - - uncharacterized LOC101055811 protein-coding 258368 Mm.377460 NM_146371 ENSMUSG00000062892 Olfr1450 MOR202-33 - 19|19 A olfactory receptor 1450 protein-coding 53722 D7Cwr18 D7Cw18|D7Tm18 - - DNA segment, Chr 7, Case Western Reserve 18 unknown 102467389 n-TTcgt5 n-Tt14 - 16 A1|16 nuclear encoded tRNA threonine 5 (anticodon CGT) tRNA 329096 Mm.417782 NR_045297 ENSMUSG00000097171 Gm17644 4932411L15 - 1|1 A3 predicted gene, 17644 ncRNA 105246113 XR_876085 Gm41455 - - 16 B4|16 predicted gene, 41455 ncRNA 16635 Mm.333431 NM_010649 ENSMUSG00000079852 Klra4 Chok|Klra32|Klra33|Ly-49d|Ly49d|ly49r<129> - 6 F3|6 63.44 cM killer cell lectin-like receptor, subfamily A, member 4 protein-coding 329496 Mm.235844 NR_126479 ENSMUSG00000087203 Gm13986 C230060E24 - 2|2 E5 predicted gene 13986 ncRNA 14602 Mm.89928 NM_001003685 ENSMUSG00000004654 Ghrhr Ghrfr|lit|little - 6 B3|6 27.38 cM growth hormone releasing hormone receptor protein-coding 27370 Mm.32118 NM_013765 ENSMUSG00000025362 Rps26 - - 10|10 D3 ribosomal protein S26 protein-coding 319672 Mm.446707 B130021K23Rik - - 6|6 RIKEN cDNA B130021K23 gene protein-coding 385499 Gm5401 EG385499 - X|X C3 predicted pseudogene 5401 protein-coding 14585 Mm.88367 NM_010279 ENSMUSG00000025089 Gfra1 AU042498 - 19 D2|19 54.18 cM glial cell line derived neurotrophic factor family receptor alpha 1 protein-coding 791361 Mm.217963 NR_045003 ENSMUSG00000113336 Gm16497 - - 12 A1.1|12 predicted gene 16497 ncRNA 13527 Mm.94371 NM_010087 ENSMUSG00000024302 Dtna 2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn - 18 A2|18 12.08 cM dystrobrevin alpha protein-coding 102635133 Mm.483595 XR_380630 LOC102635133 - - 10 C1 uncharacterized LOC102635133 ncRNA 104248 Mm.257404 NM_172549 ENSMUSG00000020196 Cabin1 A330070M20Rik|Cain|Ppp3in - 10 C1|10 38.56 cM calcineurin binding protein 1 protein-coding 69391 NM_001145259 1700018A14Rik - - 18|18 C RIKEN cDNA 1700018A14 gene unknown 105244378 XR_867035 Gm39997 - - 2 H3|2 predicted gene, 39997 ncRNA 105245374 XR_872501 Gm40840 - - 12 A1.1|12 predicted gene, 40840 ncRNA 66402 Mm.29132 NM_025540 ENSMUSG00000042045 Sln 2310045A07Rik - 9|9 A5.3 sarcolipin protein-coding 225870 Mm.271922 NM_145495 ENSMUSG00000024883 Rin1 - - 19|19 A Ras and Rab interactor 1 protein-coding 72359 2210020O09Rik - - 16|16 RIKEN cDNA 2210020O09 gene protein-coding 100035322 Gwth5 - - - growth traits 5 unknown 105242956 XR_882137 Gm39021 - - 7 B5|7 predicted gene, 39021 ncRNA 109280071 LOC109280071 Mm657 - - VISTA enhancer mm657 biological-region 19899 Mm.3459 NM_009077 ENSMUSG00000059070 Rpl18 L18|Rpl18a - 7|7 B3 ribosomal protein L18 protein-coding 61467 D6Mit212 - - 6 35.17 cM DNA segment, Chr 6, Massachusetts Institute of Technology 212 unknown 102639148 XR_375068 Gm35528 - - 2 G3|2 predicted gene, 35528 ncRNA 626721 NR_003101 Cd63-ps Cd63-rs1|EG626721|Gm6699 - 18 27.24 cM|18 D1 CD63 antigen, pseudogene pseudo 73249 1600017P15Rik Gm24413 - 3|3 RIKEN cDNA 1600017P15 gene protein-coding 18602 Mm.250358 NM_011061 ENSMUSG00000025330 Padi4 Pad4|Pdi4 - 4 D3|4 72.34 cM peptidyl arginine deiminase, type IV protein-coding 384077 Mm.332031 NM_001085418 ENSMUSG00000036749 Pramel5 - - 4 E1|4 preferentially expressed antigen in melanoma like 5 protein-coding 100038357 Mm.387121 Gm10856 - - 15 E1-E2|15 predicted gene 10856 unknown 666424 Gm8097 EG666424 - X|X F1 predicted gene 8097 pseudo 100035309 Acla2 Acla-2 - 4 43.34 cM anticardiolipin antibody 2 unknown 105247222 XR_881602 Gm42357 - - 4 E2|4 predicted gene, 42357 ncRNA 19164 Mm.998 NM_008943 ENSMUSG00000019969 Psen1 Ad3h|PS-1|PS1|S182 - 12 D1|12 38.84 cM presenilin 1 protein-coding 102632761 LOC102632761 - - 14 E4 serine/arginine-rich splicing factor 10-like pseudo 100035489 Bmc4 - - - bone mineral content 4 unknown 53181 38.MMHAP67FLE5.seq - - - DNA segment, 38.MMHAP67FLE5 unknown 381560 Mm.44558 NM_201368 ENSMUSG00000037752 Xkr8 4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8 - 4|4 D2.3 X-linked Kx blood group related 8 protein-coding 102638533 XR_001783020 Gm35074 - - 4 D2.2|4 predicted gene, 35074 ncRNA 18634 Mm.338363 NM_008822 ENSMUSG00000020003 Pex7 MmPEX7 - 10|10 A3 peroxisomal biogenesis factor 7 protein-coding 16312 In(9)Rl-d In(9)Rl|InRl - - inversion, Chr 9, Russell, distal other 61988 D9Mit114 - - 9 51.41 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 114 unknown 102634580 Mm.145145 XR_389454 ENSMUSG00000097237 Gm26519 - - 5 E5|5 predicted gene, 26519 ncRNA 94109 Mm.436988 NM_053171 ENSMUSG00000060924 Csmd1 B930082H09|mKIAA1890 - 8|8 A1.1-A1.3 CUB and Sushi multiple domains 1 protein-coding 404465 Olfr1069-ps1 MOR189-8_p - 2|2 D olfactory receptor 1069, pseudogene 1 pseudo 100418126 Gm19019 - - 14|14 D1 non-SMC element 2 homolog (MMS21, S. cerevisiae) pseudogene pseudo 100035727 Nociq1 - - 9 53.48 cM nociceptive sensitivity inflammatory QTL 1 unknown 404737 Iglj1 Igl-J1 - 16|16 A3 immunoglobulin lambda joining 1 other 624140 Gm6474 EG624140 - 13|13 B2 proteasome (prosome, macropain) subunit, alpha type 2 pseudogene pseudo 381673 Mm.192133 NM_198665 ENSMUSG00000052014 A330070K13Rik Gm1051 - 5|5 G1.3 RIKEN cDNA A330070K13 gene protein-coding 21113 T(2D;11B5)4Dn T(2;11)4Dn|T4Dn - - reciprocal translocation, Chr 2, cytogenetic band D; and Chr 11, cytogenetic band B5, Davisson 4 other 102635638 XR_870737 LOC102635638 - - 9 A5.3 uncharacterized LOC102635638 ncRNA 102637282 XR_381119 Gm12082 - - 11 A3.3|11 16.23 cM predicted gene 12082 ncRNA 319341 C230007H23Rik - - 12|12 RIKEN cDNA C230007H23 gene protein-coding 100034854 Cfsw2 - - 5 52.23 cM cystic fibrosis survival to weaning 2 unknown 108169008 XR_001784555 Gm46891 - - 4 A5|4 predicted gene, 46891 ncRNA 18413 Mm.131422 NM_001013365 ENSMUSG00000058755 Osm OncoM - 11 A1|11 2.94 cM oncostatin M protein-coding 217715 Mm.29041 NM_145445 ENSMUSG00000004788 Eif2b2 EIF-2Bbeta|EIF2B - 12|12 D1 eukaryotic translation initiation factor 2B, subunit 2 beta protein-coding 17161 Mm.21108 NM_173740 ENSMUSG00000025037 Maoa 1110061B18Rik|AA407771 - X A1.2|X 11.78 cM monoamine oxidase A protein-coding 108167973 LOC108167973 - - 12 D3 glyceraldehyde-3-phosphate dehydrogenase-like pseudo 105247101 Mm.412398 XR_881147 4930598A11Rik - - 4|4 A3 RIKEN cDNA 4930598A11 gene ncRNA 319189 Mm.297655 NM_175666 ENSMUSG00000105827 Hist2h2bb H2b-616 - 3|3 F2.1 histone cluster 2, H2bb protein-coding 217847 Mm.29094 NM_144834 ENSMUSG00000061947 Serpina10 PZI|ZPI - 12|12 E serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10 protein-coding 668542 Mm.313460 Ighv1-62 IgG|IgM|IgVH|Igh - 12|12 F2 immunoglobulin heavy variable V1-62 pseudo 140799 Ramt1 Ram1 - 4 66.64 cM recognized antigen from MCA-induced tumor 1 unknown 102634125 Mm.399124 XR_378948 Gm31786 Gm45863 - 8 B1.1|8 predicted gene, 31786 ncRNA 105245666 XR_874121 Gm41088 - - 14 A1|14 predicted gene, 41088 ncRNA 51848 D2Ggc6e - - - DNA segment, Chr 2, G. Consalez 6, expressed unknown 62679 D16Mit103 - - 16 22.4 cM DNA segment, Chr 16, Massachusetts Institute of Technology 103 unknown 105246998 XR_880671 Gm42184 - - 3 A1|3 predicted gene, 42184 ncRNA 18935 Mm.62505 NM_008888 ENSMUSG00000012520 Phox2b Dilp1|NBPhox|Pmx2b|Px2b - 5 C3.1|5 35.95 cM paired-like homeobox 2b protein-coding 359867 DXMgc38 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 38 unknown 404495 Olfr1292-ps1 GA_x5J8B7TWLR0-1874-2347 - 2|2 E3 olfactory receptor 1292, pseudogene 1 pseudo 112321 Mwq5 - - - molecular weight of quadriceps QTL 5 unknown 77880 Mm.416977 6030442E23Rik - - 7|7 RIKEN cDNA 6030442E23 gene ncRNA 64339 Mm.292544 NM_022424 ENSMUSG00000038552 Fndc4 2810430J06Rik|6330410H20Rik|AB030187|AI838506|AW487863|FRCP1|Fnmp1 - 5|5 B1 fibronectin type III domain containing 4 protein-coding 104179 Srv - - - sensitivity to RADLV unknown 100038526 Mm.191866 NR_040563 Gm10560 - - 4 E2|4 predicted gene 10560 ncRNA 100502813 Gm19391 - - 3|3 48.13 cM predicted gene, 19391 ncRNA 110760 Igkj2 Igk-J2 - 6 C1|6 32.04 cM immunoglobulin kappa joining 2 other 73820 Mm.60493 NR_040495 4930404A05Rik - - 16|16 B5 RIKEN cDNA 4930404A05 gene ncRNA 100035532 Bdln5 - - 9 60.68 cM body length 5 unknown 667592 Gm11599 - - 1|1 C2 predicted gene 11599 pseudo 66116 Mm.13036 NM_023160 ENSMUSG00000057103 Nat8f1 1110002I11Rik|AI266962|Cml1 - 6|6 C3 N-acetyltransferase 8 (GCN5-related) family member 1 protein-coding 107305670 LOC107305670 - - - origin of replication in Il13 biological-region 208449 Mm.329810 NM_144792 ENSMUSG00000040451 Sgms1 9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23 - 19|19 C1 sphingomyelin synthase 1 protein-coding 404346 Mm.439631 NM_207693 ENSMUSG00000063549 Olfr322 GA_x5J8B7U1E65-1-838|MOR256-64|Olfr179|Olfr179-ps1|Olfr216|Olfr216-ps1|Olfr322-ps1 - 11|11 B1.3 olfactory receptor 322 protein-coding 692164 Igkv2-95-2 Gm17533|hi24 - 6|6 C1 immunoglobulin kappa variable 2-95-2 pseudo 100416314 Gm18032 - - 12|12 F2 PRA1 domain family 2 pseudogene pseudo 20957 Mm.243849 NM_011516 ENSMUSG00000027855 Sycp1 SCP1 - 3|3 F2.2 synaptonemal complex protein 1 protein-coding 102633753 Mm.416936 NR_151510 4930534H03Rik - - 10|10 C2 RIKEN cDNA 4930534H03 gene ncRNA 100417762 Gm18812 - - 14|14 E1 NOP2 nucleolar protein homolog pseudogene pseudo 108533 Ms13-3 Ms13-ps3 - - minisatellite 13-3 detected by M13 phage probe other 102640537 XR_868086 Gm36574 - - 4 D2.1|4 predicted gene, 36574 ncRNA 666927 Mm.465133 NM_001099309 ENSMUSG00000078575 Gm12887 - - 4|4 D2.2 predicted gene 12887 protein-coding 102631984 Gm30174 - - Y|Y predicted gene, 30174 ncRNA 545681 Mm.2478 NR_102393 ENSMUSG00000085667 Gm12992 - - 4|4 D2.3 predicted gene 12992 ncRNA 105244845 Gm40379 - - 6|6 predicted gene, 40379 ncRNA 112096 Bglq5 - - 6 77.7 cM body growth late QTL 5 unknown 70817 Mm.410844 4633402D09Rik - - 12|12 RIKEN cDNA 4633402D09 gene protein-coding 100417223 Gm18462 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 102640331 XR_382041 Gm36423 - - 13 A1|13 predicted gene, 36423 ncRNA 67345 Mm.234437 NM_026101 ENSMUSG00000020064 Herc4 1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593 - 10|10 B4 hect domain and RLD 4 protein-coding 667697 Gm8768 EG667697 - 10 D1|10 ribosomal protein L7A pseudogene pseudo 13587 Mm.327386 NM_007895 ENSMUSG00000072596 Ear2 EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2 - 14|14 C1 eosinophil-associated, ribonuclease A family, member 2 protein-coding 102638492 XR_382019 Gm35043 - - 13 A1|13 predicted gene, 35043 ncRNA 57869 Mm.247957 NM_178873 ENSMUSG00000046947 Adck2 AA408112|BB006057 - 6|6 B1 aarF domain containing kinase 2 protein-coding 100418002 Gm18941 - - 5|5 F STIP1 homology and U-Box containing protein 1 pseudogene pseudo 100418118 Gm19011 - - 13|13 A5 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 62138 D13Mit70 - - 13 54.28 cM DNA segment, Chr 13, Massachusetts Institute of Technology 70 unknown 102637492 Mm.399020 NR_153823 A730035I17Rik Gm34285 - 5 E3|5 RIKEN cDNA A730035I17 gene ncRNA 102635482 Gm32809 - - 13|13 predicted gene, 32809 ncRNA 21214 T(5;15)4Ad T4Ad - - reciprocal translocation, Chr 5 and 15, Adler 4 other 100039723 Gm2389 - - 1 C5|1 Sp140 nuclear body protein pseudogene pseudo 12633 Mm.336848 NM_009805 ENSMUSG00000026031 Cflar 2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip - 1 C1.3|1 29.16 cM CASP8 and FADD-like apoptosis regulator protein-coding 102635071 XR_001778215 Gm26944 - - 7 E1|7 predicted gene, 26944 ncRNA 621171 Gm13604 - - 2|2 C1.3 predicted gene 13604 pseudo 100416644 Gm18167 - - 2|2 G3 sal-like 4 pseudogene pseudo 102640526 XR_001782641 LOC102640526 - - 19 A uncharacterized LOC102640526 ncRNA 227290 Mm.379371 NM_146110 ENSMUSG00000006299 Aamp AU040907|Aamp-rs - 1 C3|1 38.53 cM angio-associated migratory protein protein-coding 74039 Mm.32584 NM_028728 ENSMUSG00000058099 Nfam1 4921501M20Rik|Cnaip - 15|15 E1 Nfat activating molecule with ITAM motif 1 protein-coding 62894 D10Mit238 - - 10 70.37 cM DNA segment, Chr 10, Massachusetts Institute of Technology 238 unknown 100039384 Gm2199 100039506 - 5 D|5 mitochondrial carrier homolog 2 pseudogene pseudo 102634592 XR_379717 Gm32133 - - 9 E3.3|9 predicted gene, 32133 ncRNA 20405 Mm.1773 NM_013664 ENSMUSG00000003200 Sh3gl1 C77078|EEN|SH3P8|Sh3d2b - 17 D|17 29.11 cM SH3-domain GRB2-like 1 protein-coding 100043730 Gm14008 - - 2|2 F1 predicted gene 14008 pseudo 102640621 Mm.436447 XR_378071 Gm36640 Gm44276 - 6 G1|6 predicted gene, 36640 ncRNA 100503599 Gm19791 - - 10|10 9.85 cM olfactory receptor 2B2-like pseudo 105246481 XR_877527 Gm41766 - - 18 E2|18 predicted gene, 41766 ncRNA 105244261 XR_866636 Gm39902 - - 2 E3|2 predicted gene, 39902 ncRNA 111702 Mpmv42 Mpmv-42 - - modified polytropic murine leukemia virus 42 other 22680 Mm.401332 NM_011751 ENSMUSG00000017421 Zfp207 8430401D15Rik|BuGZ|Zep|Znf207 - 11|11 B5 zinc finger protein 207 protein-coding 68614 Mm.275272 NM_134093 ENSMUSG00000037353 Letmd1 1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr - 15|15 F1 LETM1 domain containing 1 protein-coding 384461 Gm5313 EG384461 - 6|6 D1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 105242488 Mm.284594 LOC105242488 - - - tight junction-associated protein 1 protein-coding 62806 D14Mit203 - - - DNA segment, Chr 14, Massachusetts Institute of Technology 203 unknown 193003 Mm.440256 NM_178656 ENSMUSG00000048070 Pirt A530088H08Rik - 11|11 B3 phosphoinositide-interacting regulator of transient receptor potential channels protein-coding 665798 Mm.458907 XR_001778331 Gm7789 EG665798 - 7 A1|7 predicted pseudogene 7789 unknown 16563 Mm.355686 NM_008442 ENSMUSG00000021693 Kif2a C530030B14Rik|Kif2|Kns2|M-kinesin - 13|13 D2.1 kinesin family member 2A protein-coding 319327 B930032C10Rik - - 9|9 RIKEN cDNA B930032C10 gene protein-coding 258402 Mm.271333 NM_146407 ENSMUSG00000075179 Olfr1079 MOR189-1 - 2|2 D olfactory receptor 1079 protein-coding 111951 Iap3ra17 - - - intracisternal A-type particle, U3 region, SINE repeat a-17 other 21256 T(7;14)2Iem T2Iem - - reciprocal translocation, Chr 7 and 14, Inst of Experimental Medicine Leningrad 2 other 27412 Mm.422745 NM_013788 ENSMUSG00000070526 Peg12 Frat3 - 7 C|7 34.38 cM paternally expressed 12 protein-coding 54636 Mm.305725 NM_172372 ENSMUSG00000039382 Wdr45 C79260|DXImx38e|JM5|Sfc19|WIPI-4|Wdrx1 - X A1.1|X 3.48 cM WD repeat domain 45 protein-coding 100306955 Mm.27103 NR_028572 ENSMUSG00000097052 Snora43 ACA43 - 2|2 A3 small nucleolar RNA, H/ACA box 43 snoRNA 61728 D5Mit267 - - - DNA segment, Chr 5, Massachusetts Institute of Technology 267 unknown 76063 5830431M20Rik - - 6|6 RIKEN cDNA 5830431M20 gene protein-coding 100505199 Mm.486134 LOC100505199 - - - uncharacterized LOC100505199 ncRNA 243881 Mm.294678 NM_001081148 ENSMUSG00000040650 Cyp2b23 EG243881 - 7|7 A3 cytochrome P450, family 2, subfamily b, polypeptide 23 protein-coding 100417652 Gm18741 - - 15|15 A2 AMME chromosomal region gene 1-like pseudogene pseudo 107944 Yaa Tp(X;Y)1Ekw - - accelerated autoimmunity and lymphoproliferation transposition unknown 56306 Mm.18637 NM_019643 ENSMUSG00000039985 Fam60a Ppcs1|Pptcs1|Sinhcaf|Tera - 6|6 G3 family with sequence similarity 60, member A protein-coding 94283 Ybx1-ps2 Msy-3 - 6|6 B1 Y box protein 1, pseudogene 2 pseudo 102465626 NR_106002 ENSMUSG00000099003 Mir7035 Gm27661|mmu-mir-7035 - 5|5 G2 microRNA 7035 ncRNA 108295 Fgv2 Fgv-2 - - C3H/Fg virus 2 other 112212 Daq15 - - - directional asymmetry QTL 15 unknown 103480 AW552990 - - - expressed sequence AW552990 protein-coding 62627 D14Mit105 - - 14 50.9 cM DNA segment, Chr 14, Massachusetts Institute of Technology 105 unknown 100415983 Gm14357 - - X|X A1.1 predicted gene 14357 pseudo 225471 Mm.149280 NM_173394 ENSMUSG00000056130 Ticam2 B430113A10|TICAM-2|TRAM|Tirp|Trif - 18|18 C toll-like receptor adaptor molecule 2 protein-coding 100169876 Gm11123 - - X D|X predicted gene 11123 unknown 112004 Fecq1 - - 2 24.26 cM fecundity QTL 1 unknown 19146 Mm.5184 NM_008941 ENSMUSG00000022857 Tmprss15 Entk|Prss7 - 16|16 C3.1-C3.2 transmembrane protease, serine 15 protein-coding 100035698 Tbt2 - - - trabecular bone traits 2 unknown 100048894 Mm.4533 Gm10680 - - 9 A5.2|9 predicted gene 10680 unknown 108621 Iap5rb19 - - - intracisternal A-type particle, U5 region, SINE repeat b-19 other 102633765 Gm26606 - - 4|4 predicted gene, 26606 ncRNA 100417769 Gm18813 - - 14|14 B zinc finger, DHHC domain containing 17 pseudogene pseudo 17135 Mm.157313 NM_010757 ENSMUSG00000018143 Mafk AW061068|NF-E2|Nfe2u - 5 G2|5 78.81 cM v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian) protein-coding 666647 XM_017316338 Gm8212 EG666647 - 14|14 C1 predicted gene 8212 protein-coding 11515 Mm.439750 NM_009624 ENSMUSG00000005580 Adcy9 AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520 - 16 A1|16 2.42 cM adenylate cyclase 9 protein-coding 105246876 Gm42082 - - 11|11 predicted gene, 42082 ncRNA 54405 Mm.34869 NM_019443 ENSMUSG00000016427 Ndufa1 1810049F12Rik|MWFE - X|X A3.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 protein-coding 636952 XR_875318 Gm7194 EG636952 - 15|15 B3.1 predicted gene 7194 ncRNA 100312540 Vmn1r-ps111 Gm11308 - 13|13 A3.1 vomeronasal 1 receptor, pseudogene 111 pseudo 110269 Ftl1-rs2 - - - ferritin light chain 1, related sequence 2 protein-coding 62839 D12Mit228 - - 12 39.43 cM DNA segment, Chr 12, Massachusetts Institute of Technology 228 unknown 102639575 XR_001784888 Gm35855 - - 5 E1|5 predicted gene, 35855 ncRNA 102636042 XR_373676 Gm33224 - - 1 H2.3|1 predicted gene, 33224 ncRNA 100040208 Mm.333011 NM_001102660 ENSMUSG00000096525 Gm2663 - - 6 B1|6 predicted gene 2663 protein-coding 100416507 Gm18135 - - 13|13 D2.2 ribosomal protein L17 pseudogene pseudo 106862 Mm.436977 AA763521 - - - expressed sequence AA763521 unknown 72162 Mm.224233 NM_028136 ENSMUSG00000027770 Dhx36 2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488 - 3|3 E1 DEAH (Asp-Glu-Ala-His) box polypeptide 36 protein-coding 22788 Mm.1381 NM_011776 ENSMUSG00000004948 Zp3 Zp-3 - 5 G2|5 75.62 cM zona pellucida glycoprotein 3 protein-coding 100416817 Gm18275 - - 14|14 A2 zinc finger protein 384 pseudogene pseudo 62574 D12Mit153 - - 12 15.71 cM DNA segment, Chr 12, Massachusetts Institute of Technology 153 unknown 229445 Mm.254642 NM_177662 ENSMUSG00000028015 Ctso A330105D01Rik|AI118514 - 3|3 E3 cathepsin O protein-coding 732481 Gm9730 - - X A7.3|X Fam58a pseudogene pseudo 216810 Mm.218875 NM_153080 ENSMUSG00000000538 Tom1l2 2900016I08Rik|A730055F12Rik|AU042072|Srebf1 - 11|11 B2 target of myb1-like 2 (chicken) protein-coding 61391 D5Mit136 - - 5 59.57 cM DNA segment, Chr 5, Massachusetts Institute of Technology 136 unknown 76816 Mm.171399 NM_029756 ENSMUSG00000026504 Sdccag8 2700048G21Rik|5730470G24Rik|Cccap - 1|1 H4 serologically defined colon cancer antigen 8 protein-coding 105246401 XR_877307 Gm41693 - - 18 B2|18 predicted gene, 41693 ncRNA 97713 C78763 - - - expressed sequence C78763 protein-coding 492939 Angvq1 - - - angiogenesis by VEGF QTL 1 unknown 109280062 LOC109280062 Mm569 - - VISTA enhancer mm569 biological-region 257926 Mm.103733 NM_020289 ENSMUSG00000043925 Olfr544 MOR42-3|Ors6 - 7|7 E3 olfactory receptor 544 protein-coding 319638 Mm.73467 NM_176968 ENSMUSG00000039480 Nt5dc1 6030401B09Rik|AW987726|Nt5c2l1 - 10|10 B1 5'-nucleotidase domain containing 1 protein-coding 111413 Emv59 Emv-59 - - endogenous ecotropic MuLV 59 other 19527 Rb(3.6)3Tu Rb3Tu - - Robertsonian translocation, Chr 3 and 6, Tubingen 3 other 102633410 XR_376114 Gm31243 Gm43603 - 3 G3|3 predicted gene, 31243 ncRNA 380809 Mm.390489 Ighv10-3 EG380809|Gm5140 - 12|12 F2 immunoglobulin heavy variable V10-3 other 75788 Mm.27735 NM_029438 ENSMUSG00000038780 Smurf1 4930431E10Rik|mKIAA1625 - 5|5 G2 SMAD specific E3 ubiquitin protein ligase 1 protein-coding 27616 D0Hgu7 - - - DNA segment, Human Genetics Unit 7 unknown 105245292 XR_872055 Gm40768 - - 10 D2|10 predicted gene, 40768 ncRNA 100825 AU022245 - - - expressed sequence AU022245 unknown 102640171 XM_006508379 Gm38525 - - 7 E3|7 predicted gene, 38525 protein-coding 101056044 Gm27219 - - 9 A4|9 predicted gene 27219 pseudo 20322 Mm.371580 NM_146126 ENSMUSG00000027227 Sord Sdh-1|Sdh1|Sodh-1 - 2 E5|2 60.59 cM sorbitol dehydrogenase protein-coding 330723 Mm.334452 NM_001081187 ENSMUSG00000037406 Htra4 B430206E18Rik - 8|8 A2 HtrA serine peptidase 4 protein-coding 102640955 XR_874552 LOC102640955 - - 14 B uncharacterized LOC102640955 ncRNA 78394 Mm.280544 NM_030096 ENSMUSG00000020677 Ddx52 2700029C06Rik|ROK1 - 11|11 C DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 protein-coding 244448 Mm.64542 NM_177742 ENSMUSG00000031651 Triml1 4933403D14|BC050188 - 8|8 A4 tripartite motif family-like 1 protein-coding 101923 Mm.132350 BB212172 - - - expressed sequence BB212172 unknown 16511 Mm.6539 NM_013569 ENSMUSG00000038319 Kcnh2 AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b - 5 A3|5 10.94 cM potassium voltage-gated channel, subfamily H (eag-related), member 2 protein-coding 100504474 Mm.46323 NM_001195596 ENSMUSG00000096546 Smlr1 2010003K15Rik - 10|10 A4 small leucine-rich protein 1 protein-coding 61460 D6Mit192 - - 6 48.93 cM DNA segment, Chr 6, Massachusetts Institute of Technology 192 unknown 434198 Mm.389911 NR_045850 ENSMUSG00000100005 B130024G19Rik - - 7|7 C RIKEN cDNA B130024G19 gene ncRNA 140806 Mm.90154 NM_080729 ENSMUSG00000040770 Il25 IL-17e|Il17e - 14|14 C2 interleukin 25 protein-coding 111398 Emv27 Emv-19|Emv-27 - - endogenous ecotropic MuLV 27 other 667378 XM_011250759 Gm8600 EG667378 - 7 A3|7 predicted gene 8600 protein-coding 100526562 NR_037292 ENSMUSG00000093221 Mir3105 mmu-mir-3105 - 7 F5|7 88.46 cM microRNA 3105 ncRNA 102637447 XR_880228 Gm34253 - - 11 D|11 predicted gene, 34253 ncRNA 21437 tclLub9 tcl-Lub9 - - t-complex lethal Lub9 unknown 71461 Mm.181833 NM_175168 ENSMUSG00000023972 Ptk7 8430404F20Rik|chz|mPTK7/CCK4 - 17|17 C PTK7 protein tyrosine kinase 7 protein-coding 102640238 XR_377844 Gm36354 - - 6 D1|6 predicted gene, 36354 ncRNA 666002 Mm.469838 NM_001102584 ENSMUSG00000091945 Vmn2r114 EG666002|V2Rp3 - 17|17 A3.3 vomeronasal 2, receptor 114 protein-coding 117146 Mm.28792 NM_054093 ENSMUSG00000029577 Ube3b AI449831|AU020130 - 5|5 F ubiquitin protein ligase E3B protein-coding 97962 C78880 - - - expressed sequence C78880 unknown 61934 D5Mit372 - - 5 71.21 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 372 unknown 666429 Gm8099 EG666429 - 5|5 G2 ZW10 interactor pseudogene pseudo 672405 Gm9560 - - 10|10 D3 glial cells missing homolog 1 pseudogene pseudo 433305 Gm5527 EG433305 - 1|1 C1.1 predicted gene 5527 pseudo 102637316 Mm.399088 XR_375314 Gm14249 Gm38497 - 2 89.47 cM|2 H3 predicted gene 14249 ncRNA 102640189 XR_390931 Gm36317 - - 4 E1|4 predicted gene, 36317 ncRNA 12483 Mm.260994 NM_009845 ENSMUSG00000030577 Cd22 A530093D23|Lyb-8|Lyb8 - 7 B1|7 19.26 cM CD22 antigen protein-coding 408074 D6Wum35 - - - DNA segment, Chr 6, Washington University School of Medicine 35 unknown 110120511 LOC110120511 - - - VISTA enhancer mm1426 biological-region 212539 Mm.81916 NM_001033248 ENSMUSG00000010529 Gm266 - - 12|12 F1 predicted gene 266 protein-coding 13294 Del(17)18H Del18H - - deletion, Chr 17, Harwell 18 other 100862192 XM_003689145 ENSMUSG00000096236 LOC100862192 - - - PRAME family member 8-like protein-coding 723941 NR_030263 ENSMUSG00000076052 Mir541 Mirn541|mir-541|mmu-mir-541 - 12 F1|12 microRNA 541 ncRNA 100040442 Gm2773 - - 9|9 E3.3 predicted gene 2773 pseudo 102640960 Gm36900 - - 7|7 predicted gene, 36900 ncRNA 12012 Mm.2859 NM_007519 ENSMUSG00000039653 Baat AI118337|AI158864|BAT - 4 B1|4 26.51 cM bile acid-Coenzyme A: amino acid N-acyltransferase protein-coding 329777 Mm.331447 NM_025662 ENSMUSG00000039047 Pigk 3000001O05Rik|Gm38470|PIG-K - 3|3 H3 phosphatidylinositol glycan anchor biosynthesis, class K protein-coding 105244867 XR_869425 Gm40398 - - 6 F2|6 predicted gene, 40398 ncRNA 27451 10S - - - DNA segment, 10S unknown 67524 Mm.444300 NR_045468 ENSMUSG00000086046 1700095A21Rik - - 4 E1|4 RIKEN cDNA 1700095A21 gene ncRNA 26572 Mm.40 NM_011991 ENSMUSG00000019373 Cops3 Csn3|Sgn3 - 11|11 B1.3 COP9 signalosome subunit 3 protein-coding 108168574 XM_017318778 LOC108168574 - - Y C1 Y-linked testis-specific protein 1-like protein-coding 194237 Mm.206201 NM_177572 ENSMUSG00000048899 Rimkla B930030J24|NAAGS|NAAGS-II|Rimk - 4|4 D2.1 ribosomal modification protein rimK-like family member A protein-coding 102634933 XR_867578 Gm26871 - - 3 G1|3 predicted gene, 26871 ncRNA 668868 Gm9408 EG668868 - 3|3 G3 heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 105246813 XR_879122 Gm42037 - - 8 D1|8 predicted gene, 42037 ncRNA 14654 Mm.89320 NM_020492 ENSMUSG00000000263 Glra1 nmf11|oscillator|ot|spasmodic|spd - 11 B1.3|11 33.12 cM glycine receptor, alpha 1 subunit protein-coding 105246338 XR_877041 Gm41639 - - 17 E4|17 predicted gene, 41639 ncRNA 105245391 XR_872546 Gm40855 - - 12 A1.3|12 predicted gene, 40855 ncRNA 106527 AI131754 - - - expressed sequence AI131754 unknown 105247183 XR_881491 Gm42325 - - 4 D3|4 predicted gene, 42325 ncRNA 14867 Mm.458154 NM_008184 ENSMUSG00000068762 Gstm6 - - 3|3 F2.3 glutathione S-transferase, mu 6 protein-coding 234076 Mm.219813 NM_172282 ENSMUSG00000038497 Tmco3 B230339H12Rik|C87304 - 8|8 A1.1 transmembrane and coiled-coil domains 3 protein-coding 69639 Mm.29253 NM_027148 ENSMUSG00000027752 Exosc8 2310032N20Rik|CIP3|mKIAA4013 - 3|3 C exosome component 8 protein-coding 100035125 Adip18 - - 17 7.78 cM adiposity 18 unknown 97545 A430027C01Rik C81296 - - RIKEN cDNA A430027C01 gene protein-coding 654809 Mm.399159 NR_045871 ENSMUSG00000106333 4930428O21Rik - - 5|5 F RIKEN cDNA 4930428O21 gene ncRNA 102636610 XR_375820 Gm20652 - - 3 F1|3 38.9 cM predicted gene 20652 ncRNA 17240 Mm.329100 NM_010783 ENSMUSG00000032717 Mdfi I-mf|I-mfa - 17 C|17 23.99 cM MyoD family inhibitor protein-coding 101055938 Gm29747 - - 3 A1|3 predicted gene, 29747 pseudo 54132 Mm.5567 NM_016861 ENSMUSG00000055044 Pdlim1 CLP36|Clim1|mClim1 - 19|19 C3 PDZ and LIM domain 1 (elfin) protein-coding 258490 Mm.377532 NM_146497 ENSMUSG00000109497 Olfr492 MOR204-18 - 7|7 E3 olfactory receptor 492 protein-coding 105246604 Gm41873 - - 19|19 predicted gene, 41873 ncRNA 497097 Mm.454496 NM_001011874 ENSMUSG00000051951 Xkr4 AY534250|Gm210|XRG4|mKIAA1889 - 1|1 A1 X-linked Kx blood group related 4 protein-coding 72184 Mm.153585 NM_028145 ENSMUSG00000035298 Klhl35 2810406K13Rik - 7|7 E1 kelch-like 35 protein-coding 102640795 XR_375965 Gm36778 - - 3 F3|3 predicted gene, 36778 ncRNA 66522 Mm.154906 NM_023217 ENSMUSG00000056204 Pgpep1 2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp - 8|8 B3.3 pyroglutamyl-peptidase I protein-coding 232065 Mm.321293 Igkv8-19 EP3-6VL|Igk-V8-19 - 6|6 C1 immunoglobulin kappa variable 8-19 other 105246837 XR_879462 Gm42059 - - 19 A|19 predicted gene, 42059 ncRNA 60850 D5Mit68 - - 5 60.4 cM DNA segment, Chr 5, Massachusetts Institute of Technology 68 unknown 100416798 Gm11350 - - 13|13 A3.1 predicted gene 11350 pseudo 320696 Mm.209991 NM_177230 ENSMUSG00000050050 Ccdc158 4932413O14Rik - 5|5 E2 coiled-coil domain containing 158 protein-coding 100417306 Gm18519 - - 17|17 A3.2 crumbs homolog 1 pseudogene pseudo 100416039 Gm17885 - - 19|19 C1 cathepsin L pseudogene pseudo 11775 Mm.322894 NM_021492 ENSMUSG00000062444 Ap3b2 AI549966|AU042881|Naptb|[b]-NAP|beta-NAP|beta3B - 7 D3|7 45.71 cM adaptor-related protein complex 3, beta 2 subunit protein-coding 69085 Mm.52356 NM_145453 ENSMUSG00000021621 Zcchc9 1810019C21Rik - 13|13 C3 zinc finger, CCHC domain containing 9 protein-coding 102635365 Gm29023 - - Y|Y predicted gene 29023 ncRNA 100126269 Mm.247402 NR_045280 ENSMUSG00000115453 BC048602 - - 15 B3.1|15 cDNA sequence BC048602 ncRNA 493173 Vmbic5 - - - ventral midbrain iron content 5 unknown 258638 Mm.271486 NM_146644 ENSMUSG00000075137 Olfr1163 MOR174-8 - 2|2 D olfactory receptor 1163 protein-coding 102467643 n-TCgca57 n-Tc57 - 6 B2.3|6 nuclear encoded tRNA cysteine 57 (anticodon GCA) tRNA 108167502 XR_001778351 Gm46018 - - 7 F1|7 predicted gene, 46018 ncRNA 102631815 XR_001785445 Gm30056 - - 6 G2|6 predicted gene, 30056 ncRNA 102635405 NR_136890 Gm32755 - - 12 D2|12 predicted gene, 32755 ncRNA 20632 Snrp1c-ps2 mC-[y]22 - 13|13 A3.1 U1 small nuclear ribonucleoprotein 1C, pseudogene 2 pseudo 100502887 NM_001011861 ENSMUSG00000058807 Olfr331 MOR275-4 - 11|11 B1.3 olfactory receptor 331 protein-coding 15482 Mm.14287 NM_013558 ENSMUSG00000007033 Hspa1l Hsc70t|Msh5 - 17 B1|17 18.51 cM heat shock protein 1-like protein-coding 404365 Olfr260-ps1 MOR26-4_p - 7|7 E3 olfactory receptor 260, pseudogene 1 pseudo 72082 Mm.142581 NM_028089 ENSMUSG00000025002 Cyp2c55 2010318C06Rik - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 55 protein-coding 381410 Mm.330401 NM_001033451 ENSMUSG00000075040 Zfp408 Gm1011 - 2|2 E1 zinc finger protein 408 protein-coding 20927 Mm.259076 NM_011510 ENSMUSG00000040136 Abcc8 D930031B21Rik|SUR1|Sur - 7 B3|7 29.66 cM ATP-binding cassette, sub-family C (CFTR/MRP), member 8 protein-coding 105243961 XR_865570 Gm39667 - - 1 C5|1 predicted gene, 39667 ncRNA 117069 D11Lgp4e - - - DNA segment, Chr 11, Lothar Hennighausen 4, expressed unknown 52585 Mm.21623 NM_026819 ENSMUSG00000002332 Dhrs1 1110029G07Rik|AW112170|D14Ertd484e - 14 C3|14 28.19 cM dehydrogenase/reductase (SDR family) member 1 protein-coding 100526501 NR_037277 ENSMUSG00000092862 Mir3094 mir-3094|mmu-mir-3094 - 4 A5|4 20.76 cM microRNA 3094 ncRNA 13259 Del(10)1H Del1H - - deletion, Chr 10, Harwell 1 other 105246737 XR_878637 Gm41979 - - 1 G3|1 predicted gene, 41979 ncRNA 93922 D16Jhu61 230K7.SP6 - - DNA segment, Chr 16, Johns Hopkins University 61 unknown 22245 Mm.425076 NM_011675 ENSMUSG00000002550 Uck1 URK1|Umpk - 2|2 B uridine-cytidine kinase 1 protein-coding 100859931 Mm.291222 NM_001142939 ENSMUSG00000041716 Gm20604 AK010878-Moap1 - 12 E|12 predicted gene 20604 protein-coding 13106 Mm.21758 NM_021282 ENSMUSG00000025479 Cyp2e1 Cyp2e - 7 F4|7 85.94 cM cytochrome P450, family 2, subfamily e, polypeptide 1 protein-coding 61730 D5Mit263 - - 5 71.44 cM DNA segment, Chr 5, Massachusetts Institute of Technology 263 unknown 62417 D14Mit207 - - 14 12.07 cM DNA segment, Chr 14, Massachusetts Institute of Technology 207 unknown 111971 Rnu1b3 Rnu1b-3 - - U1b3 small nuclear RNA snRNA 100043728 Mm.416180 LOC100043728 - - 2|2 H3 uncharacterized LOC100043728 unknown 102638600 XR_380184 Gm35126 - - 10 A3|10 predicted gene, 35126 ncRNA 619994 Mm.313480 Ighv1-77 Gm16746 - 12|12 F2 immunoglobulin heavy variable 1-77 other 100035009 Fmgty3 - - 4 46.99 cM femur geometry 3 unknown 100035271 Stheal11 - - 17 19.74 cM soft tissue heal 11 unknown 319358 Mm.218637 NM_176898 C530047H08Rik - - 17|17 A1 RIKEN cDNA C530047H08 gene unknown 110632 H2-Q14 Q14 - - histocompatibility 2, Q region locus 14 protein-coding 102639959 XR_373467 Gm36148 - - 1 C2|1 predicted gene, 36148 ncRNA 384695 Mm.480284 NM_001166707 ENSMUSG00000094385 Vmn1r123 Gm1446 - 7|7 A3 vomeronasal 1 receptor 123 protein-coding 667382 Xlr3d-ps EG667382|Xlr3d - X|X A7.3 X-linked lymphocyte-regulated 3D, pseudogene pseudo 108167633 XR_001779053 Gm46098 - - 1 C5|1 predicted gene, 46098 ncRNA 109470 Crhq1 Crh1 - 11 62.4 cM compensatory renal hypertrophy QTL 1 unknown 53771 DXHXS676 DXS676h - - DNA segment, Chr X, human DXS676 unknown 102639336 Gm35672 - - 13|13 predicted gene, 35672 ncRNA 100417959 Gm14985 - - X|X E3 DnaJ (Hsp40) homolog, subfamily C, member 14 pseudogene pseudo 668965 Gm9427 EG546327|EG668965 - X A1.1|X spindlin family, member 2 pseudogene pseudo 217310 Mm.205707 NM_175454 ENSMUSG00000034586 Hid1 C630004H02Rik - 11|11 E2 HID1 domain containing protein-coding 665363 Gm7600 EG665363 - 8|8 A1.1 ribosomal protein S3A pseudogene pseudo 71989 Mm.273515 NM_028040 ENSMUSG00000032044 Rpusd4 2410001E19Rik - 9|9 A4 RNA pseudouridylate synthase domain containing 4 protein-coding 105242759 XR_869411 Gm38889 - - 6 F1|6 predicted gene, 38889 ncRNA 102635256 XR_387965 Gm32642 - - 8 D2|8 predicted gene, 32642 ncRNA 236576 Mm.297666 NM_001030293 ENSMUSG00000061654 Spry3 Gm1409|Gm391|sprouty3 - X|X sprouty RTK signaling antagonist 3 protein-coding 105245299 Gm40774 - - 10|10 predicted gene, 40774 ncRNA 53816 D17Leh108B D17Leh108|D17Tu108 - - DNA segment, Chr 17, Lehrach 108B unknown 61231 D1Mit247 - - 1 20.14 cM DNA segment, Chr 1, Massachusetts Institute of Technology 247 unknown 194197 Gm12901 - - 4|4 D2.2 predicted gene 12901 pseudo 94192 Mm.102752 NM_052993 ENSMUSG00000042460 C1galt1 2210410E06Rik|AV284120|T-synthase - 6|6 A1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 protein-coding 100125255 Trbj2-1 Gm16804 - 6 19.7 cM|6 B1 T cell receptor beta joining 2-1 other 384084 Gm13246 - - 4|4 E1 predicted gene 13246 pseudo 100303646 NR_028433 ENSMUSG00000064621 AF357355 MBII-343 - 12|12 F1 snoRNA AF357355 snoRNA 382088 Mm.360477 NM_205822 ENSMUSG00000038750 Omt2b AU018149|C86230|Mosg|OM2b - 9 E1|9 43.65 cM oocyte maturation, beta protein-coding 111530 Tcra-V9 - - - T cell receptor alpha, variable 9 other 257838 Olfr1319-ps1 GA_x5J8B7W3P0G-705890-705633 - 2|2 E3 olfactory receptor 1319, pseudogene 1 pseudo 102917 AI462521 - - - expressed sequence AI462521 unknown 105245736 XR_874561 Gm41136 - - 14 C1|14 predicted gene, 41136 ncRNA 108168733 Gm46727 - - 2 G3|2 predicted gene, 46727 pseudo 98871 AI194270 - - - expressed sequence AI194270 unknown 117222 Ap4q - - - alcohol preference 4 QTL unknown 629785 Gm7003 EG629785|IGHV(III)-4 - 12|12 F1 predicted gene 7003 other 100417381 Gm18580 - - 14|14 E4 ubiquitin-associated protein 2 pseudogene pseudo 108699 Mm.257073 NM_029716 ENSMUSG00000056486 Chn1 0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2 - 2|2 C3 chimerin 1 protein-coding 52612 Mm.486409 D13Ertd332e - - 13 45.1 cM DNA segment, Chr 13, ERATO Doi 332, expressed unknown 102632859 XR_390831 Gm30822 - - 4 D3|4 predicted gene, 30822 ncRNA 433047 Mm.298027 NR_045150 Gm20741 - - 16|16 C3.3 keratin associated protein pseudogene pseudo 639576 Gm7273 EG639576 - 18|18 E3 C2 calcium-dependent domain containing 2-like pseudogene pseudo 233246 Mm.254431 NM_177694 ENSMUSG00000055489 Ano5 9330162L24|Gdd1|Tmem16e - 7|7 B4 anoctamin 5 protein-coding 61387 D5Mit125 - - 5 12.7 cM DNA segment, Chr 5, Massachusetts Institute of Technology 125 unknown 105245340 Mm.4857 XR_872234 Gm40812 - - 11 A1|11 predicted gene, 40812 ncRNA 102638792 XR_391578 Gm35271 - - 7 C|7 predicted gene, 35271 ncRNA 385138 Mm.293026 NM_198677 ENSMUSG00000072145 BC061237 - - 14|14 C1 cDNA sequence BC061237 protein-coding 102632477 Mm.406773 NR_155763 Gm30539 - - 10 D3|10 predicted gene, 30539 ncRNA 102637053 XR_377305 Gm33959 - - 6 A1|6 predicted gene, 33959 ncRNA 62820 D13Mit260 - - 13 63.73 cM DNA segment, Chr 13, Massachusetts Institute of Technology 260 unknown 108168425 XR_001782713 LOC108168425 - - 19 C3 uncharacterized LOC108168425 ncRNA 100040611 Gm10154 - - 4|4 C3 ribosomal protein L34 pseudogene pseudo 102638988 Gm35416 - - 13|13 predicted gene, 35416 pseudo 433003 NR_153656 Gm5481 EG433003 - 16|16 A2 ribosomal protein L30 pseudogene pseudo 219170 Mm.320428 NM_177629 ENSMUSG00000045655 Fam216b 9330158N17|AU021034 - 14|14 D3 family with sequence similarity 216, member B protein-coding 433131 Gm5497 EG433131|Ppia-ps17_1026.1 - 17|17 E1.1 peptidylprolyl isomerase A pseudogene 17_1026.1 pseudo 218194 Mm.160124 NM_198419 ENSMUSG00000054728 Phactr1 9630030F18Rik|Rpel1 - 13|13 A4 phosphatase and actin regulator 1 protein-coding 67054 Mm.182931 NM_025939 ENSMUSG00000029247 Paics 2610511I09Rik|ADE2H1|AIRC|PAIS - 5|5 C3.3 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase protein-coding 102631851 XR_377258 Gm30078 - - 5 G3|5 predicted gene, 30078 ncRNA 61269 D2Mit219 - - 2 44.69 cM DNA segment, Chr 2, Massachusetts Institute of Technology 219 unknown 723828 NR_029807 ENSMUSG00000065471 Mir222 Mirn222|mir-222|mmu-mir-222 - X A1.3|X microRNA 222 ncRNA 102639394 XR_001782418 Gm35720 - - 18 E1|18 predicted gene, 35720 ncRNA 105243583 XR_880301 Gm39468 - - 11 E2|11 predicted gene, 39468 ncRNA 62813 D13Mit270 - - 13 56.92 cM DNA segment, Chr 13, Massachusetts Institute of Technology 270 unknown 100861860 Gm21275 - - Y|Y predicted gene, 21275 protein-coding 667013 Gm14730 - - X|X A7.3 predicted gene 14730 pseudo 12767 Mm.1401 NM_009911 ENSMUSG00000045382 Cxcr4 CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo - 1 E3|1 56.43 cM chemokine (C-X-C motif) receptor 4 protein-coding 108167787 XR_001779703 Gm46205 - - 10 D3|10 predicted gene, 46205 ncRNA 77265 Mm.483592 9430002A10Rik - - 8|8 C3 RIKEN cDNA 9430002A10 gene unknown 85170 D12Mit36 - - 12 26.43 cM DNA segment, Chr 12, Massachusetts Institute of Technology 36 unknown 404335 Mm.377341 NM_207572 ENSMUSG00000054890 Olfr1535 MOR256-36|MOR256-63|Olfr1365 - 13|13 A3.1 olfactory receptor 1535 protein-coding 102638638 XR_375063 Gm14114 - - 2 G1|2 72.63 cM predicted gene 14114 ncRNA 321002 B930063P07Rik - - 13|13 RIKEN cDNA B930063P07 gene protein-coding 243914 Mm.389870 NM_144556 ENSMUSG00000036560 Lgi4 Lgil3|clp - 7 B1|7 19.29 cM leucine-rich repeat LGI family, member 4 protein-coding 259100 Mm.377842 NM_147096 ENSMUSG00000063582 Olfr666 MOR34-1 - 7|7 E3 olfactory receptor 666 protein-coding 71242 Mm.151498 NM_027733 ENSMUSG00000024352 Spata24 2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2 - 18|18 B2 spermatogenesis associated 24 protein-coding 77974 Mm.274373 NM_030017 ENSMUSG00000021123 Rdh12 - - 12|12 C3 retinol dehydrogenase 12 protein-coding 112253 Cia3 - - 6 52.75 cM collagen induced arthritis QTL 3 unknown 434339 Ap3s1-ps2 Ap3s1-rs2|EG434339|Gm5610 - 8|8 C5 adaptor-related protein complex 3, sigma 1 subunit, pseudogene 2 pseudo 100534622 Gm17449 - - 13|13 34.54 cM predicted gene, 17449 protein-coding 73127 3110039C02Rik - - 3|3 RIKEN cDNA 3110039C02 gene protein-coding 71529 Mm.255986 NM_144531 ENSMUSG00000040606 Kazn 2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin - 4|4 E1 kazrin, periplakin interacting protein protein-coding 105592 AU018466 - - - expressed sequence AU018466 protein-coding 100036266 Grwtj1 - - - growth trajectory 1 unknown 110349 Evi6 - - - ecotropic viral integration site 6 protein-coding 100038478 Mm.483740 Gm10616 - - - predicted gene 10616 unknown 102640764 Mm.442613 XR_381842 Gm36756 - - 12 E|12 predicted gene, 36756 ncRNA 73024 Mm.268027 NM_133749 ENSMUSG00000055943 Emc7 2900064A13Rik|AI451465|ORF3|c11orf3 - 2|2 E3 ER membrane protein complex subunit 7 protein-coding 67329 Mm.394933 NR_028360 1700018L02Rik - - 19|19 C1 RIKEN cDNA 1700018L02 gene ncRNA 117076 Actre3 Actre3q - 2 68.3 cM activity response to ethanol 3 unknown 75111 Mm.440931 XR_379016 4930512H18Rik - - 8|8 B3.1 RIKEN cDNA 4930512H18 gene unknown 12638 Mm.15621 NM_021050 ENSMUSG00000041301 Cftr AW495489|Abcc7 - 6 A2|6 8.1 cM cystic fibrosis transmembrane conductance regulator protein-coding 110202 Aecp Acp - - vitamin A enhanced cleft palate protein-coding 101055712 Gm29717 - - 14 C3|14 predicted gene, 29717 pseudo 100042065 Mm.209678 NM_001177348 ENSMUSG00000091937 Gm3646 - - 1 B|1 predicted gene 3646 protein-coding 100417834 Gm18855 - - 7|7 A3 heterogeneous nuclear ribonucleoprotein K pseudogene pseudo 102634397 XR_385093 Gm31989 - - 16 C4|16 predicted gene, 31989 ncRNA 102640308 Mm.393871 XR_388274 Gm38527 - - 19 A|19 predicted gene, 38527 ncRNA 105246529 XR_877704 Gm41804 - - 19 A|19 predicted gene, 41804 ncRNA 105243604 Mm.455745 XR_880317 Gm39474 - - 11 E2|11 predicted gene, 39474 ncRNA 493140 Lxw6 - - 7 2.71 cM lupus BXSB x NZW 6 unknown 108168368 XR_001782420 Gm46613 - - 18 D1|18 predicted gene, 46613 ncRNA 105242799 XR_869507 Gm38911 - - 6 G1|6 predicted gene, 38911 ncRNA 102467474 n-TNgtt2 n-Tn2 - 15 A1|15 nuclear encoded tRNA asparagine 2 (anticodon GTT) tRNA 61606 D9Mit256 - - 9 26.42 cM DNA segment, Chr 9, Massachusetts Institute of Technology 256 unknown 70552 Mm.45104 NM_153777 ENSMUSG00000038637 Lrrc56 5730427C23Rik|BB110509|mFLJ00101 - 7|7 F5 leucine rich repeat containing 56 protein-coding 105247092 XR_881096 Gm42252 - - 4 A1|4 predicted gene, 42252 ncRNA 100125297 Imacq - - - isoflurane minimum alveolar concentration QTL unknown 18824 Mm.18565 NM_019755 ENSMUSG00000031146 Plp2 mIMA4 - X A1.1|X 3.45 cM proteolipid protein 2 protein-coding 102643259 LOC102643259 - - - nucleoredoxin-like protein 1 protein-coding 102636436 Mm.421287 XR_389166 ENSMUSG00000097117 Gm26730 - - 11 E2|11 predicted gene, 26730 ncRNA 27913 D16Ium52 - - 16 55.55 cM DNA segment, Chr 16, Indiana University Medical 52 unknown 100039818 Gm2439 - - 5|5 E1 predicted gene 2439 pseudo 320763 Mm.124169 A430034D21Rik - - 1|1 RIKEN cDNA A430034D21 gene protein-coding 96861 C76132 - - - expressed sequence C76132 unknown 16317 In(YLS)Lub InLub|Y|Y - - inversion, Chr Y, Lubeck other 434758 Mm.357753 NM_001114157 ENSMUSG00000071769 Rhox3h EG434758|Rhox3.8|Rhox3g - X A3.3|X reproductive homeobox 3H protein-coding 402753 Mm.132885 D630033A02Rik - - 10|10 D2 RIKEN cDNA D630033A02 gene protein-coding 665480 Gm7654 EG665480 - 1|1 A3 isopentenyl-diphosphate delta isomerase pseudogene pseudo 65247 Mm.234152 NM_023046 ENSMUSG00000026311 Asb1 1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146 - 1 D|1 46.19 cM ankyrin repeat and SOCS box-containing 1 protein-coding 105243358 XR_870577 Gm39305 - - 9 A3|9 predicted gene, 39305 ncRNA 73083 2900082C11Rik - - 12|12 RIKEN cDNA 2900082C11 gene protein-coding 102693 Mm.28639 NM_153537 ENSMUSG00000048537 Phldb1 AU041016|D330037A14Rik|Ll5a - 9|9 A5.2 pleckstrin homology like domain, family B, member 1 protein-coding 109279948 LOC109279948 Mm403 - - VISTA enhancer mm403 biological-region 436188 XM_017318677 Gm5751 EG436188 - X|X A1.1 predicted gene 5751 protein-coding 61818 D2Mit353 - - 2 68.3 cM DNA segment, Chr 2, Massachusetts Institute of Technology 353 unknown 61339 D3Mit210 - - 3 38.78 cM DNA segment, Chr 3, Massachusetts Institute of Technology 210 unknown 546644 NM_008531 ENSMUSG00000022582 Ly6g Gr-1|Gr1|Ly-6G - 15|15 D3 lymphocyte antigen 6 complex, locus G protein-coding 100416001 Gm17861 - - X|X A1.1 IK cytokine pseudogene pseudo 102635791 XR_387088 Gm33039 - - X F2|X predicted gene, 33039 ncRNA 17957 Mm.274308 NM_019632 ENSMUSG00000027438 Napb Brp14|E161|I47|SNARE|b-SNAP - 2|2 G3 N-ethylmaleimide sensitive fusion protein attachment protein beta protein-coding 258392 Mm.377476 NM_146397 ENSMUSG00000064006 Olfr190 MOR183-4 - 16|16 C1.3 olfactory receptor 190 protein-coding 23856 Mm.253836 NM_011805 ENSMUSG00000038914 Dido1 6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido - 2|2 H4 death inducer-obliterator 1 protein-coding 94071 Mm.197689 NM_053165 ENSMUSG00000030364 Clec2h Clrf|clr-f - 6|6 F3 C-type lectin domain family 2, member h protein-coding 102637582 XR_387447 Gm34353 - - 1 E4|1 predicted gene, 34353 ncRNA 100034773 Tshp12 QTL-TSH12.2 - - tooth shape 12 unknown 723955 NR_029812 ENSMUSG00000065524 Mir135a-2 Mirn135a-2|mir-135a-2 - 10|10 C2 microRNA 135a-2 ncRNA 100049172 Mm.379767 Gm10428 - - - predicted gene 10428 unknown 67334 Mm.46146 NM_026096 ENSMUSG00000040456 Hypm 1700054O13Rik|H2al3 - X|X A1.1 huntingtin interacting protein M protein-coding 67596 Mm.131264 NM_183264 ENSMUSG00000034833 Tespa1 5830405N20Rik|A430001F24Rik|AI450549 - 10|10 D3 thymocyte expressed, positive selection associated 1 protein-coding 319562 Mm.184335 NM_176943 ENSMUSG00000051295 9630028B13Rik - - 1|1 H5 RIKEN cDNA 9630028B13 gene ncRNA 102639094 Gm28102 - - Y|Y predicted gene 28102 protein-coding 112372 Apmt2 - - 9 53.48 cM accelerator of polyoma-induced mammary tumors 2 unknown 394432 Mm.300095 NM_201642 ENSMUSG00000090124 Ugt1a7c A10'|A13|Ugt1a10 - 1|1 D UDP glucuronosyltransferase 1 family, polypeptide A7C protein-coding 62993 D12Mit280 - - 12 60.94 cM DNA segment, Chr 12, Massachusetts Institute of Technology 280 unknown 100416998 Gm18354 - - 7|7 D3 vomeronasal 2, receptor 66 pseudogene pseudo 105243253 Mm.383540 XR_879097 ENSMUSG00000101613 Gm28516 - - 8 C5|8 predicted gene 28516 ncRNA 100035398 Blct4 - - - blood cell traits 4 unknown 546088 Gm5912 EG546088 - 8 C5|8 G patch domain and KOW motifs pseudogene pseudo 672372 Gm9557 - - 9|9 A5.3 heat shock protein 90, alpha (cytosolic), class A member 1 pseudogene pseudo 230909 Mm.332067 NM_001085505 ENSMUSG00000070577 Gm572 b2b1167Clo - 4|4 E2 predicted gene 572 protein-coding 56744 Mm.332490 NM_019932 ENSMUSG00000029373 Pf4 Cxcl4|Scyb4 - 5|5 E1 platelet factor 4 protein-coding 100035609 Egq6 - - - early growth QTL 6 unknown 78380 2600002D14Rik - - - RIKEN cDNA 2600002D14 gene protein-coding 69820 Mm.281060 1810059H22Rik Gm577 - 5|5 G3 RIKEN cDNA 1810059H22 gene unknown 493161 Splq5 - - - spleen weight QTL 5 unknown 110120445 LOC110120445 - - - VISTA enhancer mm1052 biological-region 109978 Mm.31840 NM_026639 ENSMUSG00000030217 Art4 4432404K01Rik|ARTC4|DO|DOK1 - 6 G1|6 66.72 cM ADP-ribosyltransferase 4 protein-coding 102633317 XR_378938 Gm31172 Gm45480 - 8 B1.1|8 predicted gene, 31172 ncRNA 108167411 XR_001778066 Gm45974 - - 7 A3|7 predicted gene, 45974 ncRNA 243755 Mm.23666 NM_172892 ENSMUSG00000029843 Slc13a4 9630060C05Rik|SUT-1|SUT1 - 6|6 B1 solute carrier family 13 (sodium/sulfate symporters), member 4 protein-coding 105242855 Gm38949 - - 11|11 predicted gene, 38949 ncRNA 102636973 XR_871979 Gm33897 - - 10 C3|10 predicted gene, 33897 ncRNA 100503795 Gm19899 - - X|X 21.49 cM predicted gene, 19899 ncRNA 28120 D10Wsu159e - - 10 24.87 cM DNA segment, Chr 10, Wayne State University 159, expressed unknown 100036334 Iba6 - - 2 14.7 cM induction of brown adipocytes 6 unknown 108169151 XR_001785291 Gm46964 - - 6 D1|6 predicted gene, 46964 ncRNA 74239 Mm.179704 NM_028833 ENSMUSG00000036555 Iqce 1700028P05Rik|mKIAA1023 - 5|5 G2 IQ motif containing E protein-coding 109576 Bey - - - bulgy-eye unknown 105387 Mm.26838 NM_134072 ENSMUSG00000033715 Akr1c14 9030611N15Rik|AW557061 - 13|13 A1 aldo-keto reductase family 1, member C14 protein-coding 100042662 Vmn2r-ps49 100042803|Gm4040 - 7|7 A1 vomeronasal 2, receptor, pseudogene 49 pseudo 170744 Mm.196676 NM_133212 ENSMUSG00000040522 Tlr8 - - X|X F5 toll-like receptor 8 protein-coding 60363 Mm.87202 NM_021719 ENSMUSG00000001739 Cldn15 2210009B08Rik|BB107105 - 5|5 G2 claudin 15 protein-coding 73315 1700041L08Rik - - 4|4 RIKEN cDNA 1700041L08 gene protein-coding 665953 Gm12035 - - 11|11 A3.1 ribosomal protein L15 pseudogene pseudo 100418020 Gm20955 - - 3|3 F2.1 Rap guanine nucleotide exchange factor (GEF) 2 pseudogene pseudo 107935 Idd9.1 - - - insulin dependent diabetes susceptibility 9.1 protein-coding 404431 Olfr831-ps1 - - 9|9 A2 olfactory receptor 831, pseudogene 1 pseudo 69786 Mm.218434 NM_176842 ENSMUSG00000054226 Tprkb 0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1 - 6|6 C3 Tp53rk binding protein protein-coding 102631645 XR_388867 Gm29932 - - 11 B5|11 predicted gene, 29932 ncRNA 751520 NR_030449 ENSMUSG00000076253 Mir680-3 Mirn680-3 - 12 A3|12 microRNA 680-3 ncRNA 100038736 Mm.57295 Gm10209 - - - predicted gene 10209 protein-coding 62796 D15Mit167 - - 15 25.58 cM DNA segment, Chr 15, Massachusetts Institute of Technology 167 unknown 258706 Mm.453816 NM_146711 ENSMUSG00000070377 Olfr43 IA7|MOR125-1|MOR125-5_p|Olfr403 - 11|11 B5 olfactory receptor 43 protein-coding 102635603 XR_390557 Gm32894 - - 4 B1|4 predicted gene, 32894 ncRNA 27710 D1Dau33 - - - DNA segment, Chr 1, DA Underhill 33 unknown 52990 M6T7 - - - DNA segment, M6T7 unknown 71887 Mm.379204 NM_027982 ENSMUSG00000002228 Ppm1j 2310008J22Rik|PP2Czeta|Ppp2cz - 3|3 F2.2 protein phosphatase 1J protein-coding 102638684 Gm28656 - - Y|Y predicted gene 28656 protein-coding 105242541 XR_861455 LOC105242541 - - - uncharacterized LOC105242541 ncRNA 102632778 Mm.441023 XR_380099 6530403G13Rik - - 10|10 A1 RIKEN cDNA 6530403G13 gene ncRNA 102633343 Gm31191 - - 13 D2.2|13 predicted gene, 31191 pseudo 27857 D0Nds16 - - - DNA segment, Nuffield Department of Surgery 16 unknown 245282 Mm.390820 NM_177744 ENSMUSG00000050982 Apol10a 9030421J09Rik - 15|15 E1 apolipoprotein L 10A protein-coding 102635690 Gm11281 - - 13|13 8.09 cM predicted gene 11281 pseudo 102465642 NR_106027 ENSMUSG00000098267 Mir7060 Gm27515|mmu-mir-7060 - 7|7 F3 microRNA 7060 ncRNA 235435 Mm.436581 NM_145835 ENSMUSG00000032401 Lctl E130104I05Rik|KLPH - 9|9 C lactase-like protein-coding 105245898 Mm.414064 NR_155439 ENSMUSG00000115335 Gm41279 - - 15 B1|15 predicted gene, 41279 ncRNA 72195 Mm.164187 NM_028150 ENSMUSG00000053134 Supt7l 2610524B01Rik|6030455L14Rik - 5|5 B1 suppressor of Ty 7-like protein-coding 320057 A630057N01Rik - - 4|4 B1 RIKEN cDNA A630057N01 gene protein-coding 102467626 n-TVtac1 n-Tv21 - 19 A|19 nuclear encoded tRNA valine 1 (anticodon TAC) tRNA 69048 Mm.402215 NM_022885 ENSMUSG00000021629 Slc30a5 1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1 - 13|13 D1 solute carrier family 30 (zinc transporter), member 5 protein-coding 231868 Mm.440105 NM_172726 ENSMUSG00000039244 E130309D02Rik A630028N22 - 5|5 G2 RIKEN cDNA E130309D02 gene protein-coding 70213 2310075M01Rik - - 14|14 RIKEN cDNA 2310075M01 gene protein-coding 102634383 Gm31979 - - 14|14 predicted gene, 31979 ncRNA 102640545 Mm.207463 XR_378070 Gm36582 - - 6 G1|6 predicted gene, 36582 ncRNA 111829 Iapls1-67 - - - intracisternal A particle, lymphocyte specific 1-67 other 19579 Rb(5.19)1Wh Rb1Wh|T1Wh - - Robertsonian translocation, Chr 5 and 19, White 1 other 170812 Mm.423023 NM_133245 Ahsp EDRF|Eraf - - alpha hemoglobin stabilizing protein protein-coding 30800 Mm.390121 NM_013903 ENSMUSG00000018620 Mmp20 - - 9|9 A1 matrix metallopeptidase 20 (enamelysin) protein-coding 433698 Mm.444648 NM_001277167 ENSMUSG00000078721 Fam205a1 Gm12429 - 4|4 A5 family with sequence similarity 205, member A1 protein-coding 100039921 Gm2495 - - 9|9 E3.3 predicted gene 2495 pseudo 77595 Mm.159949 NM_029937 ENSMUSG00000027939 Nup210l 4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps - 3|3 F1 nucleoporin 210-like protein-coding 102639705 XR_867959 Gm35956 - - 4 C6|4 predicted gene, 35956 ncRNA 100126097 Fl1sa - - - fatty liver 1 in SMXA unknown 102637163 XM_006540494 ENSMUSG00000101232 LOC102637163 - - 7 B1 major allergen I polypeptide chain 1-like protein-coding 105243984 XR_865659 Gm39683 - - 1 G3|1 predicted gene, 39683 ncRNA 100499514 NR_037217 ENSMUSG00000093280 Mir2861 mmu-mir-2861 - 2 B|2 22.09 cM microRNA 2861 ncRNA 111713 Mpmv25 Env-6|Mpmv-25|Xmmv-6 - - modified polytropic murine leukemia virus 25 other 77806 Mm.392819 NR_040619 ENSMUSG00000085958 A930019D19Rik - - 2|2 G1 RIKEN cDNA A930019D19 gene ncRNA 17844 Mm.445286 NM_008649 ENSMUSG00000058523 Mup5 Mup18 - 4|4 B3 major urinary protein 5 protein-coding 75077 4930509A12Rik - - - RIKEN cDNA 4930509A12 gene protein-coding 76419 Mm.84522 NR_040263 ENSMUSG00000045709 Smkr-ps 1700023L04Rik - 6|6 A3.3 smal lysine rich protein 1, pseudogene ncRNA 100124581 Vmn2r-ps132 - - 17|17 A3.3 vomeronasal 2, receptor, pseudogene 132 pseudo 109488 Cplaq5 - - - circadian period of locomotor activity 5 unknown 102465981 NR_105924 ENSMUSG00000098442 Mir6959 Gm27807|mmu-mir-6959 - 15|15 E3 microRNA 6959 ncRNA 230959 Mm.318874 NM_001099299 ENSMUSG00000039546 Ajap1 Gm573 - 4|4 E2 adherens junction associated protein 1 protein-coding 69851 Mm.410859 2010007E15Rik - - 8|8 A3 RIKEN cDNA 2010007E15 gene protein-coding 621380 Gm6221 EG621380 - X|X F1 predicted pseudogene 6221 pseudo 16878 Mm.4964 NM_008501 ENSMUSG00000034394 Lif - - 11 A1|11 2.94 cM leukemia inhibitory factor protein-coding 105244025 XR_865777 Gm39713 - - 1 H4|1 predicted gene, 39713 ncRNA 217119 Mm.100638 NM_145828 ENSMUSG00000020868 Xylt2 E030002B02Rik|XT-II|XT2|xylT-II - 11|11 D xylosyltransferase II protein-coding 105246075 XR_875932 Gm41423 - - 16 A1|16 predicted gene, 41423 ncRNA 13456 Dp(14)18H Dp18H - - duplication, Chr 14, Harwell 18 other 19587 Rb(6.13)1H Rb1H - - Robertsonian translocation, Chr 6 and 13, Harwell 1 other 634517 Gm7138 - - 10 C1|10 predicted gene 7138 protein-coding 105243041 Gm39077 - - 7|7 predicted gene, 39077 ncRNA 100043606 Mm.183410 XR_381465 Arl4aos 4930555J06Rik|Gm4547 - 12 B1|12 ADP-ribosylation factor-like 4A, opposite strand unknown 18048 Mm.440886 NM_010915 ENSMUSG00000066513 Klk1b4 Ngfa|alpha-NGF|mGk-4 - 7 B3|7 28.72 cM kallikrein 1-related pepidase b4 protein-coding 61137 D9Mit328 - - 9 23.53 cM DNA Segment, Chr 9 Massachusetts Institute of Technology 328 unknown 102633050 LOC102633050 - - 19 A cytochrome b-c1 complex subunit 9 pseudogene pseudo 18555 Mm.102574 NM_011049 ENSMUSG00000031065 Cdk16 Crk5|Pctaire1|Pctk1 - X A1.3|X 16.18 cM cyclin-dependent kinase 16 protein-coding 12449 Mm.77695 NM_007634 ENSMUSG00000072082 Ccnf CycF|Fbxo1 - 17 A3.3|17 12.32 cM cyclin F protein-coding 102635035 Gm21805 - - Y|Y predicted gene, 21805 protein-coding 114660 Mm.296952 NM_053258 Etos1 DD64 - 7|7 F3 ectopic ossification 1 ncRNA 105243968 XR_865593 LOC105243968 - - 1 C5 uncharacterized LOC105243968 ncRNA 547253 Mm.244406 NM_001039530 ENSMUSG00000034422 Parp14 1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268 - 16|16 B3 poly (ADP-ribose) polymerase family, member 14 protein-coding 16752 l4Rn3 l(4)3Rn - - lethal, Chr 4, Rinchik 3 unknown 105245125 Gm40619 - - 10|10 predicted gene, 40619 ncRNA 19947 Rpl30-ps1 RpL30-2 - 6|6 B1 ribosomal protein L30, pseudogene 1 pseudo 105246246 XR_876713 Gm16191 - - 17 A3.3|17 15.03 cM predicted gene 16191 ncRNA 72981 Mm.4428 NM_028410 ENSMUSG00000030753 Thap12 2900052B10Rik|Dap4|Prkrir|Rpkrir - 7|7 E1 THAP domain containing 12 protein-coding 665815 Gm7802 EG665815 - 9|9 C predicted gene 7802 pseudo 100041196 Gm13344 Gm678 - 2|2 A3 predicted gene 13344 protein-coding 71176 Mm.474695 NM_027708 ENSMUSG00000089984 Fbxo24 4933422D21Rik|Fbx24 - 5|5 G2 F-box protein 24 protein-coding 12721 Mm.290482 NM_009898 ENSMUSG00000030707 Coro1a Clabp|Lmb3|TACO|p57 - 7 69.25 cM|7 F3 coronin, actin binding protein 1A protein-coding 102632860 XR_380610 Gm30823 - - 10 C1|10 predicted gene, 30823 ncRNA 19879 Mm.285294 NM_031194 ENSMUSG00000063796 Slc22a8 Oat3|Roct - 19|19 A solute carrier family 22 (organic anion transporter), member 8 protein-coding 105246828 XM_011248577 Gm42052 - - 8 E1|8 predicted gene, 42052 protein-coding 107835 Idd6 Idd-6 - - insulin dependent diabetes susceptibility 6 protein-coding 105246577 XR_877861 Gm41848 - - 19 C3|19 predicted gene, 41848 ncRNA 78420 Mm.488197 NR_046194 ENSMUSG00000085514 Bcas3os2 9530048J24Rik - 11|11 C breast carcinoma amplified sequence 3 opposite strand 2 ncRNA 18751 Mm.207496 NM_008855 ENSMUSG00000052889 Prkcb PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2 - 7 F2|7 65.75 cM protein kinase C, beta protein-coding 26370 Mm.24643 NM_019405 ENSMUSG00000031347 Cetn2 1110034A02Rik|AI326150|Calt|caltractin - X A7.3|X 37.29 cM centrin 2 protein-coding 218332 Gm4812 - - 13|13 B3 predicted gene 4812 pseudo 108167772 Gm46191 - - 10 C1|10 nucleolar RNA helicase 2 pseudogene pseudo 28264 D10Jhu51 - - 7 33.45 cM DNA segment, Chr 10, Johns Hopkins University 51 unknown 21816 Mm.41964 NM_019984 ENSMUSG00000022218 Tgm1 2310004J08Rik|Tgase1 - 14|14 C3 transglutaminase 1, K polypeptide protein-coding 102633928 XR_378133 Sox5os4 Gm15686 - 6 G3|6 77.03 cM SRY (sex determining region Y)-box 5, opposite strand 4 ncRNA 226144 Mm.279865 NM_145502 ENSMUSG00000025198 Erlin1 2810439N09Rik|C80197|Keo4|Spfh1 - 19|19 C3 ER lipid raft associated 1 protein-coding 71826 Mm.335855 NM_027940 ENSMUSG00000095384 1700001F09Rik Gm10377 - 14|14 B RIKEN cDNA 1700001F09 gene protein-coding 66390 Mm.182294 NM_025531 ENSMUSG00000016257 Prelid3b 2310042G06Rik|AA407013|Slmo2 - 2|2 H4 PRELI domain containing 3B protein-coding 102642578 LOC102642578 - - - uncharacterized LOC102642578 ncRNA 230737 Mm.90760 NM_145552 ENSMUSG00000028869 Gnl2 BC003262|HUMAUANTIG|Ngp-1 - 4|4 D2.2 guanine nucleotide binding protein-like 2 (nucleolar) protein-coding 665382 Gm7612 EG665382 - 18|18 E4 predicted gene 7612 pseudo 69834 Mm.37380 NM_133717 ENSMUSG00000030055 Rab43 1810048P08Rik|2500004H21Rik|AW490415 - 6|6 D1 RAB43, member RAS oncogene family protein-coding 100417505 Gm12667 Hspd1-21 - 4|4 C5 heat shock protein 1 (chaperonin) pseudogene 21 pseudo 101056033 Gm28408 - - 7 B1|7 predicted gene 28408 pseudo 15354 Mm.336087 NM_008253 ENSMUSG00000015217 Hmgb3 Hmg2a|Hmg4 - X|X A7.3 high mobility group box 3 protein-coding 100126196 Tsti1 - - - tail suspension test immobility 1 unknown 102637266 XR_388818 Gm34127 - - 11 B4|11 predicted gene, 34127 ncRNA 105247620 Mm.417764 LOC105247620 - - - uncharacterized LOC105247620 ncRNA 68672 Mm.410870 1110035E04Rik - - 8|8 RIKEN cDNA 1110035E04 gene protein-coding 100775173 Ighv1-74 Gm16710 - 12|12 F2 immunoglobulin heavy variable V1-74 other 62151 D13Mit95 - - 13 24.86 cM DNA segment, Chr 13, Massachusetts Institute of Technology 95 unknown 105242914 XR_881976 Gm38993 - - 7 B2|7 predicted gene, 38993 ncRNA 102635841 Gm33082 - - 8|8 predicted gene, 33082 ncRNA 236428 Mm.383280 BC026762 - - 7|7 A3 cDNA sequence BC026762 protein-coding 22601 Mm.221992 NM_009534 ENSMUSG00000053110 Yap1 AI325207|Yap|Yap65|Yki|Yorkie - 9|9 A1 yes-associated protein 1 protein-coding 102635156 Gm32565 - - 15|15 predicted gene, 32565 pseudo 28253 Mm.272223 NM_020495 ENSMUSG00000030236 Slco1b2 7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1 - 6 G2|6 72.57 cM solute carrier organic anion transporter family, member 1b2 protein-coding 61291 D2Mit283 - - 2 74.28 cM DNA segment, Chr 2, Massachusetts Institute of Technology 283 unknown 75437 Mm.108632 NM_029287 ENSMUSG00000010841 1700006E09Rik Cfap97d1 - 11|11 D RIKEN cDNA 1700006E09 gene protein-coding 100035052 W3q12 - - - weight 3 weeks QTL 12 unknown 100042113 Gm3675 - - 7 A1|7 vomeronasal 2, receptor 30 pseudogene pseudo 101613 Mm.386833 NM_133946 ENSMUSG00000038745 Nlrp6 AI504961|Avr|Nalp6|Navr|Navr/Avr|Non-AVR|Pypaf5 - 7|7 F5 NLR family, pyrin domain containing 6 protein-coding 102640667 XR_384631 Gm36681 - - 16 A1|16 predicted gene, 36681 ncRNA 19106 Mm.378990 NM_011163 ENSMUSG00000024079 Eif2ak2 2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik - 17 E3|17 49.56 cM eukaryotic translation initiation factor 2-alpha kinase 2 protein-coding 21683 Mm.42209 NM_009347 ENSMUSG00000037705 Tecta Tctna - 9 A5.1|9 23.63 cM tectorin alpha protein-coding 80797 Mm.20897 NM_030601 ENSMUSG00000028262 Clca3a2 Clca2 - 3|3 H2 chloride channel accessory 3A2 protein-coding 100504453 Mm.484209 XR_168529 Gm20236 - - 14 D2|14 36.04 cM predicted gene, 20236 ncRNA 102635541 Mm.146793 XR_391458 Gm32849 Gm44630 - 7 B4|7 predicted gene, 32849 ncRNA 61928 D5Mit364 - - 5 49.57 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 364 unknown 100126429 Bbq1 - - - brain and behavior QTL 1 unknown 61670 D6Mit301 - - 6 66.48 cM DNA segment, Chr 6, Massachusetts Institute of Technology 301 unknown 665967 Gm7868 EG665967 - 12|12 C2 thioredoxin domain containing 9 pseudogene pseudo 107091 AA517132 - - - expressed sequence AA517132 unknown 12523 Mm.259115 NM_013489 ENSMUSG00000038147 Cd84 A130013D22Rik|CDw84|SLAMF5 - 1 H3|1 79.54 cM CD84 antigen protein-coding 21944 Mm.8983 NM_011614 ENSMUSG00000097328 Tnfsf12 Apo3l|Dr3l|Dr3lg|Tweak - 11|11 B3 tumor necrosis factor (ligand) superfamily, member 12 protein-coding 100137727 Mm.258094 9130230N09Rik - - 11|11 RIKEN cDNA 9130230N09 gene protein-coding 102632189 Mm.447414 Gm30329 - - 8|8 predicted gene, 30329 ncRNA 102466769 NR_105903 ENSMUSG00000098263 Mir6938 Gm27519|mmu-mir-6938 - 12|12 D1 microRNA 6938 ncRNA 80914 Mm.280895 NM_030724 ENSMUSG00000026558 Uck2 AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk - 1|1 H2.3 uridine-cytidine kinase 2 protein-coding 75091 4930520A20Rik - - 18|18 RIKEN cDNA 4930520A20 gene protein-coding 100418333 Gm19145 - - 17|17 E5 ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog pseudogene pseudo 233064 Mm.271677 NM_146186 ENSMUSG00000037020 Wdr62 2310038K02Rik|b2b1508Clo - 7|7 B1 WD repeat domain 62 protein-coding 102633084 Gm21902 - - Y|Y predicted gene, 21902 protein-coding 21428 Mm.628 NM_011550 ENSMUSG00000017801 Mlx Tcfl4|Tf4|bHLHd13 - 11|11 D MAX-like protein X protein-coding 98066 C78984 - - - expressed sequence C78984 unknown 102636919 Mm.394088 XR_380275 Gm15199 - - 10 B2|10 22.89 cM predicted gene 15199 ncRNA 70788 Mm.68617 NM_027551 ENSMUSG00000026308 Klhl30 4631423F02Rik - 1|1 D kelch-like 30 protein-coding 170757 Mm.317261 NM_133222 ENSMUSG00000039167 Adgrl4 1110033N21Rik|ETL1|Eltd1|Etl - 3|3 H3 adhesion G protein-coupled receptor L4 protein-coding 75423 Mm.314378 NM_182994 ENSMUSG00000036093 Arl5a 2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534 - 2|2 C1.1 ADP-ribosylation factor-like 5A protein-coding 319654 Mm.444973 6430537I21Rik - - 10|10 RIKEN cDNA 6430537I21 gene protein-coding 67618 Mm.33970 NM_026276 ENSMUSG00000025894 Aasdhppt 2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5 - 9|9 A1 aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase protein-coding 110010 Tind - - - T-peripheral cell antigen protein-coding 100036315 Salpa3 - - - serum alkaline phosphatase activity 3 unknown 102637491 Mm.417812 XR_373329 4930556I23Rik - - 1|1 B RIKEN cDNA 4930556I23 gene ncRNA 319951 Mm.225196 NR_040391 ENSMUSG00000105891 A230001M10Rik - - 3|3 F2.2 RIKEN cDNA A230001M10 gene ncRNA 102634894 Gm32369 - - 12|12 predicted gene, 32369 ncRNA 387249 NR_029526 ENSMUSG00000065440 Mirlet7g Mirnlet7g|let-7g|mmu-let-7g - 9|9 F1 microRNA let7g ncRNA 667107 Gm8460 EG667107 - 6 F1|6 predicted gene 8460 pseudo 492863 Rear2 - - 12 15.67 cM rearing 2 unknown 102638146 XR_001783858 Gm34780 - - 3 E1|3 predicted gene, 34780 ncRNA 108169185 Gm43978 - - 6 G1|6 cyclin-dependent kinase 4 pseudogene pseudo 11834 Mm.2545 NM_009702 ENSMUSG00000040383 Aqr AW495846|mKIAA0560 - 2 E4|2 57.57 cM aquarius protein-coding 100041566 Mm.489580 NM_001243113 ENSMUSG00000096664 Gm3409 - - 5 G3|5 predicted gene 3409 protein-coding 620213 Gm6136 EG620213 - 1|1 C5 ribosomal protein L6 pseudogene pseudo 105244223 XR_866517 Gm39870 - - 2 E1|2 predicted gene, 39870 ncRNA 723896 NR_029758 ENSMUSG00000065534 Mir324 Mirn324|mir-324|mmu-mir-324 - 11|11 B3 microRNA 324 ncRNA 105243894 XR_865310 Gm39615 - - 1 A5|1 predicted gene, 39615 ncRNA 232989 Mm.254223 NM_144922 ENSMUSG00000040725 Hnrnpul1 E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1 - 7|7 A3 heterogeneous nuclear ribonucleoprotein U-like 1 protein-coding 117116 D12Pgn7 - - - DNA segment, Chr 12, Paigen 7 unknown 108524 Ms13-17 Ms13-Hf1 - - minisatellite 13-17 detected by M13 phage probe other 102633477 XR_881163 Gm27243 - - 4 A3|4 predicted gene 27243 ncRNA 237877 Mm.89551 NM_001029856 ENSMUSG00000017550 Atad5 C130052G03Rik|FRAG1|Gm17 - 11|11 B5 ATPase family, AAA domain containing 5 protein-coding 66949 Mm.176695 NM_025863 ENSMUSG00000034317 Trim59 2310035M22Rik|2700022F13Rik|Mrf1|TSBF1 - 3|3 E1 tripartite motif-containing 59 protein-coding 383354 Gm5240 EG383354 - 18|18 A1 ribosomal protein SA pseudogene pseudo 667099 Nasp-ps1 EG667099|Gm8455 - 6|6 C1 nuclear autoantigenic sperm protein (histone-binding), pseudogene 1 pseudo 102637154 XR_385677 Gm34038 - - 17 E1.1|17 predicted gene, 34038 ncRNA 102380 Mm.29363 D9Mgi32 AA408061 - - DNA Segment, Chr 9, Mouse Genome Informatics 32 unknown 62769 D16Mit176 - - 16 44.11 cM DNA segment, Chr 16, Massachusetts Institute of Technology 176 unknown 53117 A007110 - - - DNA segment, A007110 unknown 100042019 LOC100042019 - - - ubiquitin-40S ribosomal protein S27a pseudo 102638808 XR_378745 Gm35285 - - 8 A1.1|8 predicted gene, 35285 ncRNA 102636067 XR_873504 Gm33240 - - 13 B1|13 predicted gene, 33240 ncRNA 105245971 Mm.380365 NR_155443 ENSMUSG00000069996 Gm41341 - - 15 D3|15 predicted gene, 41341 ncRNA 74770 Mm.44195 NM_029095 ENSMUSG00000032523 Hhatl 1110011D13Rik|Gup1|Mg56 - 9|9 F4 hedgehog acyltransferase-like protein-coding 105246419 Gm41709 - - 18|18 predicted gene, 41709 ncRNA 19568 Rb(5.14)6Mpl Rb6Mpl - - Robertsonian translocation, Chr 5 and 14, Montpellier 6 other 67588 Mm.294120 NM_026259 ENSMUSG00000025373 Rnf41 2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1 - 10 D3|10 76.55 cM ring finger protein 41 protein-coding 105246938 XR_880487 Gm42132 - - 5 E4|5 predicted gene, 42132 ncRNA 105242430 XM_011243947 Gm38699 Gm21067 - 12 A1.3|12 predicted gene, 38699 protein-coding 110951 Atp5g1-rs1 - - - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C (subunit 9), isoform 1, related sequence 1 protein-coding 28168 DYzEms20 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 20 unknown 102637745 XR_373695 Gm34477 - - 1 H2.3|1 predicted gene, 34477 ncRNA 320648 B630006K09Rik - - 6|6 RIKEN cDNA B630006K09 gene protein-coding 61826 D2Mit337 - - 2 60.8 cM DNA segment, Chr 2, Massachusetts Institute of Technology 337 unknown 108399 Srev12 Srev-12 - - SWR/J-RF/J ecotropic provirus 12 other 102637517 XR_376684 Gm34305 - - 4 D2.2|4 predicted gene, 34305 ncRNA 105243562 XR_871331 Gm39451 - - 9 F3|9 predicted gene, 39451 ncRNA 258272 Mm.377406 NM_146275 ENSMUSG00000051392 Olfr1402 MOR217-1 - 3|3 F2.1 olfactory receptor 1402 protein-coding 624717 Gm6526 EG624717 - 14|14 C1 predicted gene 6526 pseudo 102638305 Gm21722 - - Y|Y predicted gene, 21722 protein-coding 100503661 Mm.280685 1700010B13Rik - - 15|15 RIKEN cDNA 1700010B13 gene unknown 75622 Mm.26988 NM_029367 ENSMUSG00000053184 Spaca3 1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1 - 11|11 B5 sperm acrosome associated 3 protein-coding 102643096 LOC102643096 - - - uncharacterized LOC102643096 ncRNA 100039614 Mm.392931 NM_001160137 ENSMUSG00000093868 Gm20809 - - Y|Y A2 predicted gene, 20809 protein-coding 387166 NR_029719 ENSMUSG00000065505 Mir148a Mirn148|Mirn148a|mir-148a - 6 B3|6 microRNA 148a ncRNA 102467346 n-TKctt13 n-Tk13 - 17 A3.3|17 nuclear encoded tRNA lysine 13 (anticodon CTT) tRNA 110514 Prdx1-rs2 - - - peroxiredoxin 1, related sequence 2 protein-coding 666419 Gm8093 EG666419 - 9|9 E1 predicted gene 8093 pseudo 100503967 Cyp2b26-ps EG623532 - 7|7 A3 cytochrome P450, family 2, subfamily b, polypeptide 26, pseudogene pseudo 212569 Mm.358842 NM_198322 ENSMUSG00000030446 Zfp273 6820416H06Rik|Rslcan1 - 13|13 B3 zinc finger protein 273 protein-coding 61352 D4Mit148 - - 4 69.48 cM DNA segment, Chr 4, Massachusetts Institute of Technology 148 unknown 226351 Mm.439806 NM_146103 ENSMUSG00000098923 Tmem185b 2500001K11Rik - 1|1 E2.3 transmembrane protein 185B protein-coding 636859 Gm7191 - - 8 D1|8 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102635592 XR_378513 Gm32884 Gm44671 - 7 F3|7 predicted gene, 32884 ncRNA 61008 D4Mit181 - - 4 4.23 cM DNA segment, Chr 4, Massachusetts Institute of Technology 181 unknown 102635877 XR_379064 Gm33103 Gm45729 - 8 B3.3|8 predicted gene, 33103 ncRNA 102637605 Gm15425 - - 17 A1|17 5.01 cM predicted gene 15425 pseudo 109719 Pol8 Pol-8 - - viral polymerase 8 protein-coding 85148 D3Mit246 - - 3 37.32 cM DNA segment, Chr 3, Massachusetts Institute of Technology 246 unknown 62755 D17Mit189 - - 17 55.23 cM DNA segment, Chr 17, Massachusetts Institute of Technology 189 unknown 100040163 Gm2639 - - 2|2 A1 predicted gene 2639 pseudo 105247149 Gm42301 - - 4|4 predicted gene, 42301 ncRNA 666302 Gm8035 EG666302 - 6 B2.3|6 PRP18 pre-mRNA processing factor 18 homolog pseudogene pseudo 102635027 Gm32467 - - 4|4 predicted gene, 32467 ncRNA 14132 Mm.3303 NM_010189 ENSMUSG00000003420 Fcgrt FcRn - 7 B3|7 29.12 cM Fc receptor, IgG, alpha chain transporter protein-coding 64704 Mm.21880 NM_019752 ENSMUSG00000068329 Htra2 AI481710|Omi|Prss25|mnd2 - 6 C3|6 35.94 cM HtrA serine peptidase 2 protein-coding 245468 Mm.256249 NM_153169 ENSMUSG00000046287 Pnma3 - - X|X A7.3 paraneoplastic antigen MA3 protein-coding 257796 Olfr879-ps1 EG257796|GA_x5J8B7W60AJ-1667802-1666911|Gm5017 - 9 A4|9 olfactory receptor 879, pseudogene 1 pseudo 228228 Mm.377243 NM_207154 ENSMUSG00000049843 Olfr1102 MOR179-4 - 2|2 D olfactory receptor 1102 protein-coding 11859 Mm.5028 NM_008887 ENSMUSG00000007946 Phox2a Arix|Phox2|Pmx2|Pmx2a|Px2a - 7 E2|7 54.66 cM paired-like homeobox 2a protein-coding 595150 Gm6046 EG595150|Rpl32-ps5c - 5|5 F ribosomal protein L32 5C pseudogene pseudo 56868 Mm.333617 NM_020261 ENSMUSG00000074359 Psg23 1620401C02Rik|cea11 - 7 A3|7 9.18 cM pregnancy-specific glycoprotein 23 protein-coding 102640087 XR_377277 Gm36241 Gm43451 - 5 G3|5 predicted gene, 36241 ncRNA 319187 NM_178201 ENSMUSG00000095217 Hist1h2bn - - 13|13 A3.1 histone cluster 1, H2bn protein-coding 105242980 XR_882241 Gm39040 - - 7 D2|7 predicted gene, 39040 ncRNA 100504597 Gm20304 - - 10 A4|10 18.59 cM single-stranded DNA-binding protein, mitochondrial-like pseudo 105243337 Mm.417264 XR_879380 A930035F09Rik - - 8|8 E2 RIKEN cDNA A930035F09 gene ncRNA 85216 D18Mit102 - - 18 58.63 cM DNA segment, Chr 18, Massachusetts Institute of Technology 102 unknown 102638966 XR_385595 Gm35399 - - 17 B3|17 predicted gene, 35399 ncRNA 102635992 XM_006540491 ENSMUSG00000099581 LOC102635992 - - 7 B1 major allergen I polypeptide chain 1 protein-coding 61797 D2Mit411 - - 2 80.04 cM DNA segment, Chr 2, Massachusetts Institute of Technology 411 unknown 105244633 Gm40213 - - 4|4 predicted gene, 40213 ncRNA 100504149 Gm11514 - - 11 D|11 59.01 cM 60S ribosomal protein L28-like pseudo 61656 D7Mit276 - - 7 34.35 cM DNA segment, Chr 7, Massachusetts Institute of Technology 276 unknown 100418073 Gm15021 - - X|X F1 NSA2 ribosome biogenesis homolog pseudogene pseudo 108517 Ms13-12 Ms13-Ps12 - - minisatellite 13-12 detected by M13 phage probe other 103710 Mm.171514 NM_153142 ENSMUSG00000048807 Slc35e4 A330108F03Rik|AI414849|AI536442 - 11|11 A1 solute carrier family 35, member E4 protein-coding 21208 T(5;13)5Ad T5Ad - - reciprocal translocation, Chr 5 and 13, Adler 5 other 70785 Mm.284447 NM_153551 ENSMUSG00000002668 Dennd1c 4432409M07Rik - 17|17 D DENN/MADD domain containing 1C protein-coding 100038592 Mm.387127 Gm10385 - - - predicted gene 10385 protein-coding 433938 Mm.332576 NM_001081235 ENSMUSG00000070576 Mn1 AA003644|AA009236 - 5 F|5 53.86 cM meningioma 1 protein-coding 108168321 Gm46578 - - 17 A1|17 60S ribosomal protein L34 pseudogene pseudo 102633188 Mm.180157 XR_875964 Gm31077 - - 16 B1|16 predicted gene, 31077 ncRNA 66364 Mm.392089 NM_001308425 2310009A05Rik 5031420N21Rik - 9|9 D RIKEN cDNA 2310009A05 gene protein-coding 102631614 Gm29910 - - 2|2 predicted gene, 29910 ncRNA 104310 Poo - - - primary oocyte ovulation unknown 18675 Mm.2529 NM_011077 ENSMUSG00000057457 Phex Gy|HPDR|HPDR1|Hyp|PEX - X F4|X 72.38 cM phosphate regulating endopeptidase homolog, X-linked protein-coding 100502662 Gm15925 - - 7|7 A1 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6 pseudogene pseudo 237253 Mm.206759 NM_172784 ENSMUSG00000019796 Lrp11 1700034J19Rik|6330533B21|9830160H19Rik - 10|10 A1 low density lipoprotein receptor-related protein 11 protein-coding 27685 D11Moh10 - - - DNA segment, Chr 11, KL Mohlke 10 unknown 15388 Mm.9043 NM_177301 ENSMUSG00000015165 Hnrnpl C79783|D830027H13Rik|Hnrpl - 7|7 B1 heterogeneous nuclear ribonucleoprotein L protein-coding 100041272 Gm15045 - - X|X F1 predicted gene 15045 pseudo 75919 4930584E12Rik - - 9|9 RIKEN cDNA 4930584E12 gene protein-coding 14208 Mm.14501 NM_008014 ENSMUSG00000029147 Ppm1g AI385652|Fin13 - 5 B1|5 17.27 cM protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform protein-coding 100504568 Mm.321153 NR_151538 ENSMUSG00000097482 Gm17634 - - 1 E2.1|1 49.46 cM predicted gene, 17634 ncRNA 102640097 XR_373826 Gm36249 - - 1 H5|1 predicted gene, 36249 ncRNA 110343 Tel16q - - - telomeric sequence, Chr 16, q arm protein-coding 102633449 XR_381873 Gm31271 - - 12 E|12 predicted gene, 31271 ncRNA 74196 Mm.209503 NM_152817 ENSMUSG00000024078 Ttc27 2610511O17Rik - 17|17 E2 tetratricopeptide repeat domain 27 protein-coding 21689 Mm.42257 NM_011569 ENSMUSG00000020799 Tekt1 MT14 - 11|11 B4 tektin 1 protein-coding 100503487 Mm.491743 Gm19721 - - 9|9 58.55 cM predicted gene, 19721 ncRNA 105243848 XR_872249 Gm39581 - - 11 A1|11 predicted gene, 39581 ncRNA 108169176 XR_001785404 Gm46979 - - 6 G2|6 predicted gene, 46979 ncRNA 58810 Mm.30085 NM_021473 ENSMUSG00000028692 Akr1a1 2610201A18Rik|Akr1a4 - 4|4 D1 aldo-keto reductase family 1, member A1 (aldehyde reductase) protein-coding 116946 Naad4 - - - Neu associated allelic deletion 4 other 105243892 XR_865298 Gm29414 - - 1 A5|1 predicted gene 29414 ncRNA 105246280 Mm.421455 XR_876835 Gm41584 - - 17 C|17 predicted gene, 41584 ncRNA 666788 Gm15770 EG666788 - 5 G2|5 predicted gene 15770 pseudo 258626 Mm.271476 NM_146633 ENSMUSG00000057270 Olfr1501 MOR212-3 - 19|19 A olfactory receptor 1501 protein-coding 320939 Mm.436738 NR_045643 5930403L14Rik - - 4|4 E2 RIKEN cDNA 5930403L14 gene ncRNA 102635547 Gm28658 - - Y|Y predicted gene 28658 protein-coding 114165 Cons5 - - - consumption-saccharin intake 5 unknown 192852 Mm.342821 NM_001195544 ENSMUSG00000086545 Lrrc3c Gm12 - 11|11 D leucine rich repeat containing 3C protein-coding 72500 Mm.295464 NM_030244 ENSMUSG00000089762 Ier5l 2610524G09Rik - 2|2 B immediate early response 5-like protein-coding 109367 Obq1 - - - obesity QTL 1 unknown 102633493 LOC102633493 - - 3 G3 60S ribosomal protein L36a-like pseudo 104225 Rmp2 Rmp-2 - - resistance to mousepox 2 protein-coding 94232 Mm.303059 NM_033526 ENSMUSG00000008604 Ubqln4 A1Up|A1u|AI663987|CIP75|UBIN - 3|3 F1 ubiquilin 4 protein-coding 28018 Mm.282122 NM_138589 ENSMUSG00000030870 Ubfd1 AI467302|D7Wsu105e|D7Wsu128e|Ubph - 7 F2|7 65.35 cM ubiquitin family domain containing 1 protein-coding 110747 Actb-rs2 - - - actin, beta, cytoplasmic, related sequence 2 protein-coding 100312548 Gm11321 Vmn1r-ps119 - 13|13 A3.1 vomeronasal 1 receptor Vmn1r-ps119 pseudogene pseudo 108567 Iapls1-57 - - - intracisternal A particle, lymphocyte specific 1-57 other 85047 D7Mit65 - - 7 7.98 cM DNA segment, Chr 7, Massachusetts Institute of Technology 65 unknown 622178 Gm6293 EG622178 - 19|19 A predicted pseudogene 6293 protein-coding 102636594 XR_001779110 Gm33613 - - 9 A4|9 predicted gene, 33613 ncRNA 28256 D10Jhu45 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 45 unknown 105245454 XR_873212 Gm40905 - - 13 A3.3|13 predicted gene, 40905 ncRNA 105246485 XR_877537 Gm41770 - - 18 E2|18 predicted gene, 41770 ncRNA 111345 Saa - - - serum amyloid A cluster other 100418082 Gm11282 - - 13|13 A3.1 Tu translation elongation factor, mitochondrial pseudogene pseudo 105246599 Gm41869 - - 19|19 predicted gene, 41869 ncRNA 111782 Iapls1-18 - - - intracisternal A particle, lymphocyte specific 1-18 other 74366 Mm.455690 4932422M17Rik - - 5|5 F RIKEN cDNA 4932422M17 gene unknown 100043602 Gm4545 - - 7 A3|7 predicted gene 4545 pseudo 108168206 XR_001781479 Gm46490 - - 14 E5|14 predicted gene, 46490 ncRNA 108167643 XR_001779123 LOC108167643 - - 9 A4 SEC61, gamma subunit pseudogene pseudo 383051 Gm5217 EG383051 - 15|15 D3 prune homolog pseudogene pseudo 100416871 Gm29693 - - 2|2 E5 kinesin family member 16B pseudogene pseudo 105244989 XR_870517 Gm40506 - - 9 A1|9 predicted gene, 40506 ncRNA 102465903 NR_106197 ENSMUSG00000099124 Mir8117 Gm27323|mmu-mir-8117 - 5|5 B3 microRNA 8117 ncRNA 98858 AI131651 - - - expressed sequence AI131651 protein-coding 100040268 Mm.317638 NM_019475 ENSMUSG00000111611 Olfr157 Mor262-12|Olfr37c|Or37c - 4|4 B1 olfactory receptor 157 protein-coding 102632057 XR_386075 Gm30230 - - 18 A1|18 predicted gene, 30230 ncRNA 108168707 XR_001783008 Gm46722 - - 4 E2|4 predicted gene, 46722 ncRNA 216739 Mm.267478 NM_144823 ENSMUSG00000020333 Acsl6 A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837 - 11 B1.3|11 32.13 cM acyl-CoA synthetase long-chain family member 6 protein-coding 105247423 Mm.392919 LOC105247423 - - - uncharacterized LOC105247423 ncRNA 14074 Fabp3-ps1 Fabph-3|Fabph-ps1|Fabph3 - 10|10 C1 fatty acid binding protein 3, muscle and heart, pseudogene 1 pseudo 225467 Mm.262096 NM_172627 ENSMUSG00000024477 Pggt1b 2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1 - 18|18 C protein geranylgeranyltransferase type I, beta subunit protein-coding 12353 Mm.232523 NM_009802 ENSMUSG00000028972 Car6 Ca6|DOC1 - 4|4 E2 carbonic anhydrase 6 protein-coding 100416297 Gm14913 - - X|X E1 tousled-like kinase 1 pseudogene pseudo 229574 Mm.10755 NM_001013804 Flg2 EG229574 - 3|3 F2.1 filaggrin family member 2 protein-coding 100504604 Gm16316 - - 2|2 84.42 cM predicted gene 16316 ncRNA 70186 Mm.212991 NM_027342 ENSMUSG00000003955 Fam162a 2310056P07Rik|HGTD-P - 16|16 B3 family with sequence similarity 162, member A protein-coding 667310 Gm8566 EG667310 - 6|6 C1 Sod1 pseudogene pseudo 102639734 Gm35976 - - 17|17 predicted gene, 35976 ncRNA 214742 Mm.207457 NM_144814 ENSMUSG00000037395 Rcor3 4921514E24Rik|C730034D20Rik|E130101E15Rik - 1|1 H6 REST corepressor 3 protein-coding 100312511 Vmn1r-ps66 - - 7|7 A1 vomeronasal 1 receptor, pseudogene 66 pseudo 102638595 Gm35122 - - 9|9 predicted gene, 35122 ncRNA 780794 Mm.436014 Ighv5-17 Gm16609 - 12|12 F1 immunoglobulin heavy variable 5-17 other 102467460 n-TAtgc3 n-Ta32 - X F1|X nuclear encoded tRNA alanine 3 (anticodon TGC) tRNA 105243430 Gm39356 - - 9|9 predicted gene, 39356 ncRNA 102632087 XR_374196 Gm13373 - - 2 A3|2 19.38 cM predicted gene 13373 ncRNA 108167818 Gm46231 - - 10 B5.3|10 60S ribosomal protein L36 pseudogene pseudo 105247175 XR_881455 Gm42320 - - 4 D2.3|4 predicted gene, 42320 ncRNA 102634795 XR_381783 Gm32296 - - 12 D2|12 predicted gene, 32296 ncRNA 102635761 XR_392443 ENSMUSG00000100544 Gm28606 - - Y D|Y predicted gene 28606 ncRNA 434586 Igkv4-71 Gm16730|al4 - 6|6 C1 immunoglobulin kappa chain variable 4-71 other 61593 D9Mit280 - - 9 70.48 cM DNA segment, Chr 9, Massachusetts Institute of Technology 280 unknown 102636522 XR_379813 Gm33564 - - 9 F1|9 predicted gene, 33564 ncRNA 26893 Mm.3981 NM_012002 ENSMUSG00000019494 Cops6 Sgn3|VIP/MOV34 - 5|5 G2 COP9 signalosome subunit 6 protein-coding 102635709 Gm14319 - - 2|2 87.87 cM predicted gene 14319 ncRNA 27364 Mm.131443 NM_013761 ENSMUSG00000001323 Srr M100034|Rgsc34|Srs - 11|11 B5 serine racemase protein-coding 230777 Mm.246595 NM_198959 ENSMUSG00000028778 Hcrtr1 Ox1r|ox-1-R|ox1-R - 4|4 D2.2 hypocretin (orexin) receptor 1 protein-coding 257942 Olfr379-ps1 MOR135-25 - 11|11 B4 olfactory receptor 379, pseudogene 1 pseudo 105247220 XR_001783031 Gm42355 - - 4 E2|4 predicted gene, 42355 protein-coding 18120 Mm.181290 NM_026246 ENSMUSG00000007338 Mrpl49 4833419D18Rik|Nof1 - 19 A|19 4.34 cM mitochondrial ribosomal protein L49 protein-coding 628356 Gm6870 EG628356 - 18|18 E3 predicted gene 6870 pseudo 70796 Mm.100917 NM_175160 ENSMUSG00000039199 Zdhhc1 4432412D04Rik|DHHC-1 - 8|8 D3 zinc finger, DHHC domain containing 1 protein-coding 13040 Mm.3619 NM_021281 ENSMUSG00000038642 Ctss Cats - 3 F2.1|3 40.74 cM cathepsin S protein-coding 100035351 Org9 ORG17.1 - 17 12.53 cM organ weight 9 unknown 24075 Mm.274846 NM_020024 ENSMUSG00000043866 Taf10 30kDa|AU041226|TAFII30|Taf2h - 7|7 E3 TATA-box binding protein associated factor 10 protein-coding 100313510 C530020B09Rik - - 3 G1|3 RIKEN cDNA C530020B09 gene unknown 21438 tclPa1 tcl-Pa1 - - t-complex lethal Pa1 unknown 52711 D11Ertd729e - - 11 54.63 cM DNA segment, Chr 11, ERATO Doi 729, expressed unknown 211612 Mm.218811 NM_001093750 ENSMUSG00000041552 Ptchd1 9630036J22Rik|AI848149|Gm387 - X|X F3 patched domain containing 1 protein-coding 69194 2010015B12Rik - - 12|12 RIKEN cDNA 2010015B12 gene protein-coding 102633486 XR_386663 Gm31300 - - 19 C1|19 predicted gene, 31300 ncRNA 14233 Mm.32926 NM_023907 ENSMUSG00000047861 Foxi1 5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3 - 11 A4|11 19.65 cM forkhead box I1 protein-coding 108167612 Gm26983 - - 1 A1|1 40S ribosomal protein S15a pseudogene pseudo 667993 Gm8916 EG667993 - X C2|X tubulin, beta 6 pseudogene pseudo 15130 Mm.288567 NM_016956 Hbb-b2 AI036344|Hbb2|Hbbt2|beta2 - 7 E3|7 54.85 cM hemoglobin, beta adult minor chain protein-coding 383504 Gm5253 - - 1|1 C1.1 THO complex 3 pseudogene pseudo 78777 Mm.23672 NM_183137 ENSMUSG00000025377 Tepsin 2410002I01Rik|Enthd2 - 11|11 E2 TEPSIN, adaptor related protein complex 4 accessory protein protein-coding 100034791 Hdlq9 - - 16 51.42 cM HDL QTL 9 unknown 93717 Mm.247203 NM_033592 ENSMUSG00000102440 Pcdhga9 - - 18|18 B3 protocadherin gamma subfamily A, 9 protein-coding 18844 Mm.3789 NM_008881 ENSMUSG00000030084 Plxna1 2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053 - 6|6 D1 plexin A1 protein-coding 623223 Mm.367743 XR_378684 Gm6410 EG623223 - 8|8 A1.1 predicted gene 6410 unknown 102638364 XR_390387 Gm34947 - - 4 A1|4 predicted gene, 34947 ncRNA 102467644 n-TEctc3 n-Te3 - 7 E1|7 nuclear encoded tRNA glutamic acid 3 (anticodon CTC) tRNA 100040044 Gm2568 - - 12 C1|12 predicted gene 2568 unknown 102633615 XR_389136 Gm31399 - - 11 E2|11 predicted gene, 31399 ncRNA 105246064 XR_875869 Gm41414 - - 16 A1|16 predicted gene, 41414 ncRNA 670358 Mm.384475 XM_017321262 Gm9484 - - 5 E3|5 predicted gene 9484 protein-coding 102636150 Gm33300 - - 7|7 predicted gene, 33300 protein-coding 11705 Mm.376094 NM_007445 ENSMUSG00000035262 Amh MIS - 10 C1|10 39.72 cM anti-Mullerian hormone protein-coding 235300 Mm.261326 NM_001034863 ENSMUSG00000048503 Tmem136 AA396355|Gm184 - 9|9 A5.1 transmembrane protein 136 protein-coding 73962 Mm.50289 NR_040501 ENSMUSG00000085405 4930441J16Rik Astx1a|Astx1b|Astx1c - 2|2 C3 RIKEN cDNA 4930441J16 gene ncRNA 11540 Mm.333734 NM_009630 ENSMUSG00000020178 Adora2a A2AAR|A2aR|AA2AR - 10|10 C1 adenosine A2a receptor protein-coding 100034864 Capsq3 - - - capsaicin sensitivity related QTL 3 unknown 21272 T(8;10)8Ad T8Ad - - reciprocal translocation, Chr 8 and 10, Adler 8 other 109452 Cia6 - - 6 32.53 cM collagen induced arthritis QTL 6 unknown 16727 l17Wis9 l(17)-9Wis - - lethal, Chr 17, U Wisconsin 9 unknown 14376 Mm.3196 NM_008060 ENSMUSG00000071650 Ganab AU042638|G2an|GluII|mKIAA0088 - 19|19 A alpha glucosidase 2 alpha neutral subunit protein-coding 257681 GA_x5J8B7TT63N-1148-873 - - - olfactory receptor GA_x5J8B7TT63N-1148-873 protein-coding 66468 Mm.283406 NM_025581 ENSMUSG00000036223 Ska1 2810433K01Rik|AV117428 - 18|18 E2 spindle and kinetochore associated complex subunit 1 protein-coding 207133 Bbaa11 Bb11 - 1 33.31 cM B.burgdorferi-associated arthritis 11 unknown 13392 Mm.3896 NM_010054 ENSMUSG00000023391 Dlx2 AW121999|Dlx-2|Tes-1 - 2 C2|2 42.65 cM distal-less homeobox 2 protein-coding 109279922 LOC109279922 Mm182 - - VISTA enhancer mm182 biological-region 19875 ro - - - rough unknown 102637792 XR_386252 LOC102637792 - - 18 D3 uncharacterized LOC102637792 ncRNA 21823 Mm.1292 NM_009377 ENSMUSG00000000214 Th - - 7 F5|7 88.06 cM tyrosine hydroxylase protein-coding 62214 D16Mit49 - - 16 45.13 cM DNA segment, Chr 16, Massachusetts Institute of Technology 49 unknown 102636195 XR_876005 Gm33330 - - 16 B2|16 predicted gene, 33330 ncRNA 102637423 XR_386249 Gm34233 - - 18 D3|18 predicted gene, 34233 ncRNA 73081 2900084C01Rik - - 10|10 RIKEN cDNA 2900084C01 gene protein-coding 15360 Mm.289131 NM_008256 ENSMUSG00000027875 Hmgcs2 1300002P16|mHS - 3 F2.2|3 42.74 cM 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 protein-coding 100036254 Brmth1 - - - behavioral response to methamphetamines 1 unknown 97810 Mm.449843 C80068 - - - expressed sequence C80068 protein-coding 100416086 Gm12363 - - 4|4 A5 tubulin, beta 6 pseudogene pseudo 102635420 XM_011241966 Gm32766 - - 7 F1|7 predicted gene, 32766 protein-coding 545683 XR_001784566 Gm13213 - - 4|4 D2.3 predicted gene 13213 protein-coding 108167862 XR_001780127 Gm46258 - - 11 B1.1|11 predicted gene, 46258 ncRNA 21013 T(1C2;16C3)45Dn T(1;16)45Dn|T45Dn - - reciprocal translocation, Chr 1, cytogenetic band C2; and Chr 16, cytogenetic band C3, Davisson 45 other 13077 Mm.15537 NM_009993 ENSMUSG00000032310 Cyp1a2 CP12|CYPIA2|P450-3 - 9 B|9 31.3 cM cytochrome P450, family 1, subfamily a, polypeptide 2 protein-coding 246728 Mm.260926 NM_145227 ENSMUSG00000032690 Oas2 Oasl11 - 5 F|5 60.64 cM 2'-5' oligoadenylate synthetase 2 protein-coding 102639728 XR_389081 Gm35971 - - 11 E1|11 predicted gene, 35971 ncRNA 61617 D8Mit284 - - 8 44.99 cM DNA segment, Chr 8, Massachusetts Institute of Technology 284 unknown 71816 Mm.317015 NM_027934 ENSMUSG00000021720 Rnf180 3110001E11Rik|Rines - 13|13 D1 ring finger protein 180 protein-coding 100417313 Gm18524 - - 14|14 C1 crumbs homolog 1 pseudogene pseudo 56573 102g4T7 - - - DNA segment, 102g4T7 unknown 60804 D4Mit16 - - 4 61.67 cM DNA segment, Chr 4, Massachusetts Institute of Technology 16 unknown 100503422 Gm19684 - - 17|17 18.94 cM predicted gene, 19684 protein-coding 102632572 Gm30610 - - 16|16 predicted gene, 30610 ncRNA 668408 Mm.159024 1700084K02Rik - - 19|19 C3 RIKEN cDNA 1700084K02 gene unknown 100217436 NR_028536 Snord93 Gm22397|MBII-336 - 5 A3|5 small nucleolar RNA, C/D box 93 snoRNA 100417294 Gm17230 - - 10|10 A3 MYB binding protein (P160) 1a pseudogene pseudo 100417587 Gm18700 - - 1|1 E1.1 baculoviral IAP repeat-containing 2 pseudogene pseudo 102631832 XR_374632 Gm30069 - - 2 C3|2 predicted gene, 30069 ncRNA 100093655 Trnap-ggg - - - transfer RNA proline (anticodon GGG) tRNA 100035624 Scpro6 - - 3 21.81 cM Stem cell proliferation 6 unknown 16949 Mm.250492 NM_010729 ENSMUSG00000032334 Loxl1 Loxl - 9 B|9 31.65 cM lysyl oxidase-like 1 protein-coding 16069 Mm.1192 NM_152839 ENSMUSG00000067149 Jchain 9530090F24Rik|AI323815|Igj|Jch - 5|5 E1 immunoglobulin joining chain protein-coding 102639248 XR_880912 Gm35602 - - 5 B1|5 predicted gene, 35602 ncRNA 62794 D15Mit173 - - 15 56.78 cM DNA segment, Chr 15, Massachusetts Institute of Technology 173 unknown 68916 Mm.212227 NM_144536 ENSMUSG00000006191 Cdkal1 1190005B03Rik|6620401C13Rik - 13|13 A3.1-A3.2 CDK5 regulatory subunit associated protein 1-like 1 protein-coding 105244570 XR_867692 Gm40163 - - 3 H2|3 predicted gene, 40163 ncRNA 13172 Mm.307176 NM_001005232 ENSMUSG00000030507 Dbx1 AI426026|Dbx - 7 B4|7 31.44 cM developing brain homeobox 1 protein-coding 100312570 Vmn1r-ps145 - - 17 A3.2|17 11.4 cM vomeronasal 1 receptor, pseudogene 145 pseudo 108168561 XM_017318763 LOC108168561 - - Y D Y-linked testis-specific protein 1-like protein-coding 100233175 Mm.291222 NM_001142938 ENSMUSG00000091931 Gon7 - - 12|12 E GON7, KEOPS complex subunit homolog protein-coding 105246238 XR_876684 Gm41550 - - 17 A3.3|17 predicted gene, 41550 ncRNA 100040183 Gm2649 - - 12|12 C1 PRELI domain containing 1 pseudogene pseudo 102638608 Tmem167-ps3 Gm29620 - 7 A1|7 transmembrane protein 167, pseudogene 3 pseudo 69312 Mm.386795 NM_027033 ENSMUSG00000025916 Ppp1r42 1700011J18Rik|4930418G15Rik|Lrrc67|TLRR - 1|1 A2 protein phosphatase 1, regulatory subunit 42 protein-coding 102639823 Gm36045 - - X|X predicted gene, 36045 ncRNA 116701 Mm.35691 NM_054071 ENSMUSG00000008090 Fgfrl1 FGFR5|FGFR5beta|FGFR5gamma - 5|5 F fibroblast growth factor receptor-like 1 protein-coding 74897 Mm.243822 NR_040475 ENSMUSG00000104072 4930448I06Rik - - 1|1 B RIKEN cDNA 4930448I06 gene ncRNA 14369 Mm.297906 NM_008057 ENSMUSG00000041075 Fzd7 Fz7 - 1 C2|1 30.08 cM frizzled class receptor 7 protein-coding 100873094 Mm.318596 NR_046459 ENSMUSG00000085123 Rubie - - 14 C1 RNA upstream of Bmp4 expressed in inner ear ncRNA 66790 Mm.34901 NM_025768 ENSMUSG00000038515 Grtp1 5430401C05Rik|C81211|Tbc1d6 - 8|8 A1.1 GH regulated TBC protein 1 protein-coding 780834 Ighv1-1 - - 12|12 F1 immunoglobulin heavy variable V1-1 pseudo 102638531 NR_151609 Gm35073 - - 4 C6|4 predicted gene, 35073 ncRNA 319651 Mm.66568 NM_176972 ENSMUSG00000033364 Usp37 4932415L06Rik|C330008N13Rik - 1|1 C3 ubiquitin specific peptidase 37 protein-coding 110826 Mm.30200 NM_026695 ENSMUSG00000004610 Etfb 0610009I16Rik|2810441H06Rik - 7 B3|7 28.25 cM electron transferring flavoprotein, beta polypeptide protein-coding 14475 Gcap10 - - - granule cell antiserum positive 10 protein-coding 73390 Mm.181475 NM_133751 ENSMUSG00000047669 Msl3l2 1700060H10Rik - 10|10 B3 MSL3 like 2 protein-coding 493918 Fcnc-ps H-Fcn|Hfcn - 4|4 D2.3 ficolin C pseudogene pseudo 100416655 Gm14797 - - X|X C1 SET domain containing 3 pseudogene pseudo 628830 Gm12090 - - 11|11 A3.3 predicted gene 12090 pseudo 102637332 Gm34171 - - 14|14 predicted gene, 34171 ncRNA 319870 Mm.488274 NR_131123 ENSMUSG00000097781 9330136K24Rik - - 17|17 A3.2 RIKEN cDNA 9330136K24 gene ncRNA 492987 Kidq7 - - - kidney weight QTL 7 unknown 102636674 Mm.399320 NR_152787 ENSMUSG00000112778 Gm33677 - - 10 D2|10 predicted gene, 33677 ncRNA 16816 Mm.1593 NM_008490 ENSMUSG00000035237 Lcat AI046659|D8Wsu61e - 8 D3|8 53.06 cM lecithin cholesterol acyltransferase protein-coding 105244702 XR_868222 Gm40261 - - 5 A1|5 predicted gene, 40261 ncRNA 105245388 Gm40852 - - 12|12 predicted gene, 40852 ncRNA 102466255 NR_106171 ENSMUSG00000106463 Mir1291 mmu-mir-1291 - 15|15 F1 microRNA 1291 ncRNA 22414 Mm.10740 NM_009520 ENSMUSG00000027840 Wnt2b Wnt13 - 3 F2.2|3 45.88 cM wingless-type MMTV integration site family, member 2B protein-coding 666130 Gm7941 EG666130 - 18|18 B1 predicted gene 7941 pseudo 100416908 Gm18311 - - 13|13 A3.2 SCAN domain containing 3 pseudogene pseudo 111507 Igh - - 12 F1-F2|12 immunoglobulin heavy chain complex protein-coding 52755 D9Bwg1e - - - DNA segment, Chr 9, Brigham & Women's Genetics 1 expressed unknown 102639811 LOC102639811 - - 17 A2 28S ribosomal protein S21, mitochondrial pseudogene pseudo 22274 ur - - - urogenital unknown 102633390 XR_388072 Gm31225 - - 8 E1|8 predicted gene, 31225 ncRNA 100036359 Elads1 - - - ENU induced lung adenoma susceptibility 1 unknown 102637487 XR_378440 Gm34282 - - 7 F1|7 predicted gene, 34282 ncRNA 258946 Mm.271539 NM_146944 ENSMUSG00000049315 Olfr348 MOR136-8 - 2|2 B olfactory receptor 348 protein-coding 114690 Skull3 QTL-S2.1 - - skull morphology 3 unknown 100502643 Mm.131987 NR_045092 ENSMUSG00000115654 Gm19303 - - 15 C|15 19.26 cM predicted gene, 19303 ncRNA 74158 Mm.323393 NM_028792 ENSMUSG00000022426 Josd1 1300006C06Rik|mKIAA0063 - 15|15 E1 Josephin domain containing 1 protein-coding 102631601 Gm29898 - - 19|19 predicted gene, 29898 pseudo 232560 Mm.150568 NM_181541 ENSMUSG00000030309 Caprin2 C1qdc1|Eeg1|rng140 - 6|6 G3 caprin family member 2 protein-coding 72440 Mm.143908 NM_197981 ENSMUSG00000048668 Rhno1 2510047L19Rik|5930416I19Rik - 6|6 F3 RAD9-HUS1-RAD1 interacting nuclear orphan 1 protein-coding 72043 Mm.1011 NM_028072 ENSMUSG00000006800 Sulf2 2010004N24Rik|AU020235|MSulf-2|mKIAA1247 - 2|2 H3 sulfatase 2 protein-coding 74221 Mm.273326 NM_028825 ENSMUSG00000051896 Tex37 1700011F03Rik|Tsc21 - 6|6 C1 testis expressed 37 protein-coding 97519 C77901 - - - expressed sequence C77901 unknown 19606 Rb(7.18)7Mpl Rb7Mpl - - Robertsonian translocation, Chr 7 and 18, Montpellier 7 other 62247 D17Mit95 - - - DNA segment, Chr 17, Massachusetts Institute of Technology 95 unknown 105245466 XR_873251 ENSMUSG00000114404 Gm40915 - - 13 A3.3|13 predicted gene, 40915 ncRNA 106780819 Obox4-ps34 Gm20622 - 7 A2|7 8.56 cM oocyte specific homeobox 4, pseudogene 34 pseudo 258713 Mm.377649 NM_146718 ENSMUSG00000050134 Olfr430 MOR105-5P - 1|1 H3 olfactory receptor 430 protein-coding 114171 Etohcta5 - - - ethanol conditioned taste aversion 5 unknown 99757 Mm.39952 AI854905 - - - expressed sequence AI854905 protein-coding 100504261 Gm17608 - - 3|3 42.04 cM predicted gene, 17608 ncRNA 320783 C130083B21Rik - - 3|3 RIKEN cDNA C130083B21 gene protein-coding 100504537 Gm13302 - - 4|4 predicted gene 13302 protein-coding 62577 D12Mit157 - - - DNA segment, Chr 12, Massachusetts Institute of Technology 157 unknown 269569 Gm12728 Ppia-ps4_954.1 - 4|4 C7 peptidyl-prolyl cis-trans isomerase A pseudogene 4_954.1 pseudo 384350 Gm5300 EG384350 - 6|6 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 108167380 XR_001785038 LOC108167380 - - 5 B1 uncharacterized LOC108167380 ncRNA 381270 Mm.337023 NM_001045533 ENSMUSG00000039372 March4 BC056494|mKIAA1399 - 1|1 C3 membrane-associated ring finger (C3HC4) 4 protein-coding 101056083 Gm29029 - - Y|Y predicted gene 29029 protein-coding 105243354 XR_870566 Gm39301 - - 9 A3|9 predicted gene, 39301 ncRNA 110120452 LOC110120452 - - - VISTA enhancer mm1577 biological-region 100038608 Mm.450744 NR_033541 ENSMUSG00000115667 Gm10389 - - 15 A1|15 predicted gene 10389 ncRNA 73680 Mm.32997 NM_028603 ENSMUSG00000028807 Zbtb8a 2410081M15Rik|AI480941 - 4|4 D2.2 zinc finger and BTB domain containing 8a protein-coding 12973 crz - - - control of early proliferation of Trypanosoma cruzi unknown 105245689 XR_874380 Gm41102 - - 14 A3|14 predicted gene, 41102 ncRNA 13099 Mm.353875 NM_010004 ENSMUSG00000025004 Cyp2c40 AI265721|AI662255 - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 40 protein-coding 100417702 Gm18771 - - 16|16 B1 zinc finger, CCHC domain containing 6 pseudogene pseudo 100034922 Lvrq4 - - - liver weight QTL 4 unknown 105247028 XR_880781 Gm42210 - - 3 B|3 predicted gene, 42210 ncRNA 105246165 XR_876262 Gm41499 - - 16 C4|16 predicted gene, 41499 ncRNA 22763 Mm.273496 NM_011767 ENSMUSG00000022201 Zfr C920030H05Rik - 15|15 A1 zinc finger RNA binding protein protein-coding 71683 Mm.292145 NM_027863 ENSMUSG00000090523 Gypc 0610037F22Rik|Cd236r - 18 B1|18 18.05 cM glycophorin C protein-coding 791069 NR_030415 ENSMUSG00000076288 Mir301b Mirn301b|mir-301b - 16 A3|16 microRNA 301b ncRNA 78521 Mm.28449 NM_181278 ENSMUSG00000045767 B230219D22Rik AA119856|D530037I19Rik - 13|13 B1 RIKEN cDNA B230219D22 gene protein-coding 105242731 XR_869336 Gm38870 - - 6 D3|6 predicted gene, 38870 ncRNA 71241 Mm.66855 NM_027732 ENSMUSG00000011349 Dmrtc2 4933432E21Rik|Dmrt7 - 7|7 A3 doublesex and mab-3 related transcription factor like family C2 protein-coding 105243686 XR_878114 Gm39516 - - X A6|X predicted gene, 39516 ncRNA 22428 Mm.150373 NM_011722 ENSMUSG00000031516 Dctn6 AU044699|WS-3|p27 - 8|8 A4 dynactin 6 protein-coding 791332 Mm.247582 B930095I24Rik - - - RIKEN cDNA B930095I24Rik gene protein-coding 102640721 Gm36721 - - 19|19 predicted gene, 36721 ncRNA 105246224 XR_876641 Gm41536 - - 17 A3.1|17 predicted gene, 41536 ncRNA 258677 Mm.261576 NM_146682 ENSMUSG00000067522 Olfr76 MOR215-3|V5 - 19|19 A olfactory receptor 76 protein-coding 102638822 XR_391245 Gm35297 - - 7 B2|7 predicted gene, 35297 ncRNA 319215 Mm.425597 NR_040764 ENSMUSG00000099616 4932413F04Rik - - 9|9 F1 RIKEN cDNA 4932413F04 gene ncRNA 105054 AW743876 - - - expressed sequence AW743876 unknown 101809 Mm.377262 NM_182927 ENSMUSG00000037239 Spred3 AW047143|D130060H24Rik|Spred-3 - 7|7 B1 sprouty-related, EVH1 domain containing 3 protein-coding 13001 Mm.378901 NM_009975 ENSMUSG00000024387 Csnk2b CK II beta - 17 B1|17 18.59 cM casein kinase 2, beta polypeptide protein-coding 319591 D930036K23Rik - - 2|2 RIKEN cDNA D930036K23 gene protein-coding 102637289 XR_391564 Gm34140 - - 7 C|7 predicted gene, 34140 ncRNA 105247075 XM_011249823 LOC105247075 - - - nuclear body protein SP140-like protein-coding 112092 Tlq1 - - 2 100.95 cM telomere length QTL 1 unknown 100416127 Gm17229 - - 10|10 A3 F-box protein 34 pseudogene pseudo 100862349 XM_003688806 ENSMUSG00000104824 Gm21663 - - 5 B1|5 predicted gene, 21663 protein-coding 102632195 XR_378478 Gm30335 - - 7 F3|7 predicted gene, 30335 ncRNA 666663 Gm12458 - - 4|4 B1 predicted gene 12458 pseudo 109280129 LOC109280129 Mm1401 - - VISTA enhancer mm1401 biological-region 66616 Mm.89515 NM_025664 ENSMUSG00000002365 Snx9 2700073N08Rik|SDP1|SH3PX1 - 17 A1|17 3.51 cM sorting nexin 9 protein-coding 100504362 Mm.220853 NM_001193667 ENSMUSG00000095320 Gm1987 100038965 - 4|4 A5 predicted gene 1987 protein-coding 108167928 XR_001780337 Gm46296 - - 11 E1|11 predicted gene, 46296 ncRNA 100040699 Gm2914 - - 1|1 A5 predicted gene 2914 pseudo 102631715 XR_374325 Gm29985 - - 2 B|2 predicted gene, 29985 ncRNA 100040529 Mm.309140 XR_383856 Gm2824 - - 15 B1|15 predicted gene 2824 ncRNA 102640090 XR_389933 Gm36244 - - 6|6 predicted gene, 36244 ncRNA 16384 Is(HSR;1)1Icg Is1Icg - - insertion, homogeneous staining region, Chr 1, Inst of Cytology and Genetics Novosibirsk 1 other 100035133 Arfix - - 17 17.98 cM antibody response to human factor IX unknown 16658 Mm.330745 NM_010658 ENSMUSG00000074622 Mafb Kreisler|Krml|Krml1|kr - 2 H2|2 80.92 cM v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) protein-coding 359986 DXMgc123 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 123 unknown 240613 Mm.313351 NM_172836 ENSMUSG00000046138 9930021J03Rik Gm9832|mKIAA2026 - 19|19 C1 RIKEN cDNA 9930021J03 gene protein-coding 100416055 Gm21925 - - 7|7 A3 tectorin alpha pseudogene pseudo 52939 G.seq - - - DNA segment, G unknown 208198 Mm.60720 NM_145361 ENSMUSG00000003344 Btbd2 2610037C03Rik|4930512K17Rik - 10|10 C1 BTB (POZ) domain containing 2 protein-coding 100042864 Gm10263 - - 13|13 C1 40S ribosomal protein S28 pseudogene pseudo 664821 XM_972876 Gm7356 EG664821 - 17|17 A2 predicted gene 7356 protein-coding 74046 4632432E15Rik Gm38310 - 3|3 RIKEN cDNA 4632432E15 gene protein-coding 102635360 XM_017315287 Gm32719 - - 12 A1.2|12 predicted gene, 32719 protein-coding 57329 Mm.157751 NM_020595 ENSMUSG00000027416 Otor CDRAP|Fdp|MIA|MIAL - 2|2 G1 otoraplin protein-coding 112124 Szs2 Kasz4 - 4 43.34 cM seizure susceptibility 2 unknown 21335 Mm.379024 NM_011524 ENSMUSG00000037313 Tacc3 Aint|C86661|Eric1 - 5|5 B2 transforming, acidic coiled-coil containing protein 3 protein-coding 102640129 Gm36270 - - 14|14 predicted gene, 36270 ncRNA 67604 Mm.270137 NM_026269 ENSMUSG00000025858 Get4 1110007L15Rik|AW412535|Cee - 5|5 G2 golgi to ER traffic protein 4 protein-coding 102633784 LOC102633784 - - 16 A1 40S ribosomal protein S2 pseudogene pseudo 102636202 Mm.407006 NR_155867 Gm33337 - - 10 D2|10 predicted gene, 33337 ncRNA 56734 Mm.439742 NM_008807 ENSMUSG00000023467 Tulp2 Pdet - 7|7 B3 tubby-like protein 2 protein-coding 69794 Mm.396139 NR_036588 ENSMUSG00000110340 1600027J07Rik - - 8|8 D2 RIKEN cDNA 1600027J07 gene ncRNA 105244124 Mm.383504 XR_866140 LOC105244124 - - 2 B uncharacterized LOC105244124 ncRNA 102638687 XR_382020 Gm35190 - - 13 A1|13 predicted gene, 35190 ncRNA 140546 Mm.235891 NM_080469 ENSMUSG00000033423 Eri3 PINT1|Prnpip1 - 4|4 D1-D2.1 exoribonuclease 3 protein-coding 105245376 XR_001780564 Gm40842 - - 12 A1.2|12 predicted gene, 40842 ncRNA 105244112 XR_866115 Gm39785 - - 2 B|2 predicted gene, 39785 ncRNA 546659 Gm5962 EG546659 - 16|16 B1 predicted gene 5962 pseudo 100416066 Gm17900 - - 16|16 B5 predicted gene, 17900 pseudo 14282 Mm.248335 NM_008036 ENSMUSG00000003545 Fosb - - 7 A3|7 9.56 cM FBJ osteosarcoma oncogene B protein-coding 621697 Mm.440587 NM_001101561 Rpl32l EG621697|Gm6251 - 10|10 A3 ribosomal protein L32-like protein-coding 74521 Mm.248619 NM_028980 ENSMUSG00000021209 Ppp4r4 8430415E04Rik|mKIAA1622 - 12|12 E protein phosphatase 4, regulatory subunit 4 protein-coding 106660622 LOC106660622 - - 3 A3 Sox2 control region biological-region 102640528 XR_391268 Gm36567 - - 7 B2|7 predicted gene, 36567 ncRNA 61634 D8Mit241 - - 8 48.92 cM DNA segment, Chr 8, Massachusetts Institute of Technology 241 unknown 329753 Mm.119720 NR_040552 ENSMUSG00000104763 9830132P13Rik 9830132P13 - 3|3 G2 RIKEN cDNA 9830132P13 gene ncRNA 117083 Tne1 Tne-1q - 1 67.71 cM total number errors, hindlimb coordination test 1 unknown 100040491 Gm12349 - - 11|11 D predicted gene 12349 protein-coding 100042139 Gm3690 - - 7|7 A1 zinc finger protein 772 pseudogene pseudo 102636239 XR_386705 Gm27042 - - 19 C3|19 predicted gene, 27042 ncRNA 53978 Mm.23253 NM_020028 ENSMUSG00000031861 Lpar2 Edg4|IPA2|LPA2 - 8 B3.3|8 33.91 cM lysophosphatidic acid receptor 2 protein-coding 100035462 Imab3 - - - intermale aggressive behavior 3 unknown 97464 C85351 - - - expressed sequence C85351 protein-coding 16975 Mm.442134 NM_053073 ENSMUSG00000028613 Lrp8 4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b - 4|4 C7 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor protein-coding 225849 Mm.118076 NM_198168 ENSMUSG00000024777 Ppp2r5b B'beta|BC026670 - 19|19 A protein phosphatase 2, regulatory subunit B', beta protein-coding 61037 D8Mit170a D8Mit170 - 8 10.35 cM DNA segment, Chr 8, Massachusetts Institute of Technology 170a unknown 68337 Mm.133825 NM_024223 ENSMUSG00000006356 Crip2 0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp - 12 F1|12 61.57 cM cysteine rich protein 2 protein-coding 102638344 Gm38508 - - 13|13 predicted gene, 38508 ncRNA 102632677 Gm29545 - - Y|Y predicted gene 29545 pseudo 102638137 XR_385585 Gm34773 - - 17 B3|17 predicted gene, 34773 ncRNA 435619 Gm5700 EG435619 - 1|1 C1.1 FK506 binding protein 9 pseudogene pseudo 619601 Gm6087 EG619601 - 14|14 E4 tera pseudogene pseudo 69956 Mm.30256 NM_027275 ENSMUSG00000063884 Ptcd3 2610034F17Rik|2810422B04Rik|AA589622|AU045708|MRP-S39 - 6|6 C1 pentatricopeptide repeat domain 3 protein-coding 240843 Mm.329579 NM_207583 ENSMUSG00000004031 Brinp2 6430517E21Rik|BB361039|Fam5b|mKIAA1747 - 1|1 H1 bone morphogenic protein/retinoic acid inducible neural-specific 2 protein-coding 100035144 Scpro4 - - 1 37.02 cM Stem cell proliferation 4 unknown 433102 Mm.136760 NM_001163194 ENSMUSG00000090509 Sfta2 EG433102 - 17|17 B1 surfactant associated 2 protein-coding 621352 Gm6215 EG621352 - X|X F1 predicted pseudogene 6215 pseudo 634346 XM_981747 Gm7135 EG634346 - 1|1 D predicted gene 7135 protein-coding 15146 Hc15 Cen15 - - heterochromatin, Chr 15 other 19495 Rb(16.17)74Lub Rb74Lub - - Robertsonian translocation, Chr 16 and 17, Lubeck 74 other 105245942 XR_875324 Gm41314 - - 15 B3.1|15 predicted gene, 41314 ncRNA 19951 Mm.104368 NM_172086 ENSMUSG00000057841 Rpl32 AU020185|rpL32-3A - 6 E3|6 53.72 cM ribosomal protein L32 protein-coding 330119 Mm.133062 NM_177872 ENSMUSG00000043635 Adamts3 1100001H14Rik|6330442E02Rik - 5|5 E1 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3 protein-coding 16235 In(10)7H - - - inversion, Chr 10, Harwell 7 other 226562 Mm.245446 NM_001081290 ENSMUSG00000040225 Prrc2c 1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096 - 1 H2.1|1 proline-rich coiled-coil 2C protein-coding 100312567 Vmn1r-ps141 - - 17|17 A3.2 vomeronasal 1 receptor, pseudogene 141 pseudo 105244004 XR_865723 Gm39699 - - 1 H2.3|1 predicted gene, 39699 ncRNA 108167557 XR_001778668 Gm46055 - - 8 E1|8 predicted gene, 46055 ncRNA 26897 Mm.1978 NM_012006 ENSMUSG00000072949 Acot1 ACH2|CTE-1|CTE-I|Cte1|D12Ucla1 - 12 D1|12 39.0 cM acyl-CoA thioesterase 1 protein-coding 100515 Mm.38277 NM_001081144 ENSMUSG00000046572 Zfp518b 6820424L24Rik|AA410078|AI661722|Znf518b - 5|5 B3 zinc finger protein 518B protein-coding 73544 Mm.464365 1700093A15Rik - - - RIKEN cDNA 1700093A15 gene protein-coding 102466159 NR_105843 ENSMUSG00000099160 Mir6415 Gm27714|mmu-mir-6415 - 5|5 E2 microRNA 6415 ncRNA 171283 Mm.17771 NM_134248 ENSMUSG00000040405 Havcr1 AI503787|KIM-1|TIM-1|Tim1|Timd1 - 11|11 B1.1 hepatitis A virus cellular receptor 1 protein-coding 76641 Mm.2261 1700123N01Rik - - 3|3 RIKEN cDNA 1700123N01 gene protein-coding 21529 Tcra-V2.5 - - - T cell receptor alpha, variable 2.5 other 102640972 Mm.405617 NR_156009 Gm36908 - - 10 A4|10 predicted gene, 36908 ncRNA 109422 Mol3 - - - modifier of LPS-response 3 unknown 171197 Mm.377176 NM_134179 ENSMUSG00000093376 Vmn1r23 V1rc24 - 6|6 B3 vomeronasal 1 receptor 23 protein-coding 108168416 XR_001782678 Gm46655 - - 19 A|19 predicted gene, 46655 ncRNA 234290 Mm.39244 NM_173411 ENSMUSG00000049946 BC030500 - - 8|8 B2 cDNA sequence BC030500 protein-coding 78571 C630050I24Rik - - 8|8 D3 RIKEN cDNA C630050I24 gene ncRNA 104943 Mm.248938 NM_027828 ENSMUSG00000036136 Fam110c 9030611O19Rik|AU019489 - 12|12 A2 family with sequence similarity 110, member C protein-coding 110471 Tcra-V8.1 - - - T cell receptor alpha, variable 8.1 other 100035998 Lore10 - - - loss of righting induced by ethanol 10 unknown 435483 Gm5675 EG435483 - 16|16 C3.1 mitogen-activated protein kinase 3 pseudogene pseudo 112136069 Gm15931 - - 7 A1|7 2.47 cM predicted gene 15931 pseudo 102635252 Mm.220252 XR_878672 C230057A21Rik Gm1642 - 3|3 A1 RIKEN cDNA C230057A21 gene ncRNA 105244187 LOC105244187 - - 2 C1.3 60S ribosomal protein L21 pseudogene pseudo 21367 Mm.260861 NM_011531 ENSMUSG00000053024 Cntn2 D130012K04Rik|TAG-1|TAG1|Tax - 1|1 E4 contactin 2 protein-coding 100417501 Gm18651 - - 18|18 B1 oxysterol binding protein-like 9 pseudogene pseudo 100504349 Gm13187 - - 2|2 2.49 cM predicted gene 13187 ncRNA 102639086 Mm.404270 XR_376051 Gm15551 - - 3 G1|3 55.99 cM predicted gene 15551 ncRNA 102638568 XR_381017 Gm35102 - - 11 A1|11 predicted gene, 35102 ncRNA 108168441 XR_001782763 Gm46674 - - X C3|X predicted gene, 46674 ncRNA 53877 Mm.377124 NM_001017422 Ear4 RNS2|Rnase2|mR4 - 14|14 C1 eosinophil-associated, ribonuclease A family, member 4 protein-coding 435927 XM_973315 ENSMUSG00000084927 Gm5724 EG435927 - 6|6 G2 predicted gene 5724 protein-coding 105244885 Gm40413 - - 6|6 predicted gene, 40413 ncRNA 258334 Mm.390388 NM_146337 ENSMUSG00000047511 Olfr1396 MOR276-2 - 11|11 B1.2 olfactory receptor 1396 protein-coding 626683 Gm11362 - - 13|13 A3.1 predicted gene 11362 protein-coding 53806 D17H16S259 D16S259h - - DNA segment, Chr 17, human D16S259 unknown 100040514 Defa-ps14 - - 8|8 A1.3 defensin, alpha, pseudogene 14 pseudo 105245877 Gm41260 - - 15|15 predicted gene, 41260 ncRNA 241196 Mm.110886 NM_172852 ENSMUSG00000048775 Serpinb13 5430417G24|HUR7|HURPIN|PI13|headpin - 1|1 E2.1 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13 protein-coding 16732 L1Md-Tf18 - - - L1 repeat, Tf subfamily, member 18 other 15412 Mm.3546 NM_010459 ENSMUSG00000038692 Hoxb4 Hox-2.6 - 11 D|11 59.83 cM homeobox B4 protein-coding 100043638 Mm.382801 NM_001324552 ENSMUSG00000109396 Gm4565 - - 7 A3|7 predicted gene 4565 protein-coding 102640759 XR_380778 Gm36751 - - 10 D1|10 predicted gene, 36751 ncRNA 53796 D2H11S408 D11S408h - - DNA segment, Chr 2, human D11S408 unknown 100036233 Vmbic9 - - 17 22.26 cM ventral midbrain iron content 9 unknown 102631768 Gm30022 - - 3|3 predicted gene, 30022 protein-coding 71217 Mm.158622 4933431I19Rik - - 16|16 RIKEN cDNA 4933431I19 gene unknown 102639784 Gm28079 - - Y|Y predicted gene 28079 ncRNA 108168460 LOC108168460 - - X A3.3 40S ribosomal protein S27-like pseudo 60921 D9Mit36 - - 9 52.64 cM DNA segment, Chr 9, Massachusetts Institute of Technology 36 unknown 111763 Iapls2-7 - - - intracisternal A particle, lymphocyte specific 2-7 other 100040388 Gm12551 - - 4|4 C4 predicted gene 12551 protein-coding 74705 4930505O19Rik - - 15|15 RIKEN cDNA 4930505O19 gene protein-coding 434436 Mm.475142 NM_001081244 Lsmem2 - - 9|9 F1 leucine-rich single-pass membrane protein 2 protein-coding 626419 Mm.390334 NR_046025 ENSMUSG00000086808 Gm11981 - - 11|11 A1 predicted gene 11981 ncRNA 68954 Mm.46960 NR_045812 ENSMUSG00000097247 1500012K07Rik - - 7|7 D1 RIKEN cDNA 1500012K07 gene ncRNA 259087 Mm.377832 NM_147083 ENSMUSG00000050085 Olfr622 MOR26-1 - 7|7 E3 olfactory receptor 622 protein-coding 77807 Mm.196961 A930025H08Rik - - 13|13 RIKEN cDNA A930025H08 gene protein-coding 15227 Mm.33897 NM_010426 ENSMUSG00000042812 Foxf1 AI450827|FREAC1|Foxf1a|Freac-1|HFH-8|Hfh8 - 8 E1|8 70.31 cM forkhead box F1 protein-coding 665381 Gm7611 EG665381 - 13|13 A2 predicted gene 7611 pseudo 12010 Mm.163 NM_009735 ENSMUSG00000060802 B2m Ly-m11|beta2-m|beta2m - 2 E5|2 60.55 cM beta-2 microglobulin protein-coding 330031 Mm.389059 NR_152132 Gm5106 A230021K14|EG330031 - 5|5 A1 predicted gene 5106 ncRNA 105244254 XR_866609 Gm39896 - - 2 E2|2 predicted gene, 39896 ncRNA 67609 Mm.212157 NM_026273 ENSMUSG00000059920 4930453N24Rik AI649104|din - 16|16 C1.3 RIKEN cDNA 4930453N24 gene protein-coding 77424 Mm.99224 NM_183123 ENSMUSG00000053729 Spinkl 9530002K18Rik - 18|18 B3 serine protease inhibitor, Kazal type-like protein-coding 108169043 XM_017321203 Gm46911 - - 5 B3|5 predicted gene, 46911 protein-coding 27702 D1Dau16 - - - DNA segment, Chr 1, DA Underhill 16 unknown 621842 Gm6266 EG621842 - 6|6 G3 ribosomal protein S2 pseudogene pseudo 73736 Mm.341848 NM_028632 ENSMUSG00000021243 Fcf1 1110008B24Rik - 12|12 D1 FCF1 rRNA processing protein protein-coding 110007 Qui - - - quinine sensitivity, taste unknown 112426 Lrnx2 - - - learning contextual 2 unknown 13838 Mm.400747 NM_007936 ENSMUSG00000026235 Epha4 2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb - 1 C4|1 39.55 cM Eph receptor A4 protein-coding 100503334 Gm15728 - - 5|5 56.88 cM predicted gene 15728 ncRNA 68230 Mm.431352 NR_045302 1700102H20Rik - - 17|17 A1 RIKEN cDNA 1700102H20 gene ncRNA 665859 Gm14980 EG665859 - X|X E3 predicted gene 14980 protein-coding 102640283 XR_385723 Gm36392 - - 17 E1.3|17 predicted gene, 36392 ncRNA 111400 Emv32 Emv-32|Fgv-1 - - endogenous ecotropic MuLV 32 other 193034 Mm.447485 NM_001001445 ENSMUSG00000005952 Trpv1 OTRPC1|TRPV1alpha|TRPV1beta|VR-1|Vr1 - 11 B4|11 45.25 cM transient receptor potential cation channel, subfamily V, member 1 protein-coding 56174 Mm.190650 NM_019542 ENSMUSG00000034744 Nagk Gnk - 6|6 C3 N-acetylglucosamine kinase protein-coding 19507 Rb(2.17)11Rma Rb11Rma - - Robertsonian translocation, Chr 2 and 17, Universita di Roma 11 other 100038621 Mm.387118 Gm10839 D15Ertd466e - - predicted gene 10839 ncRNA 12740 Mm.7339 NM_009903 ENSMUSG00000047501 Cldn4 Cep-r|Cpetr|Cpetr1 - 5 G2|5 74.9 cM claudin 4 protein-coding 114896 Mm.287475 NM_054070 ENSMUSG00000031967 Afg3l1 1700047G05Rik|3110061K15Rik - 8|8 E1 AFG3-like AAA ATPase 1 protein-coding 102631595 XR_376859 Gm29892 - - 5 B1|5 predicted gene, 29892 ncRNA 102631634 XR_387630 Gm29926 - - 5 F|5 predicted gene, 29926 ncRNA 100384878 Gm17825 - - 6 C1|6 32.21 cM ribosomal protein L7A pseudogene pseudo 102467493 n-TCgca16 n-Tc16 - 6 B2.3|6 nuclear encoded tRNA cysteine 16 (anticodon GCA) tRNA 100418131 Gm19022 - - 9|9 F3 selection and upkeep of intraepithelial T cells 4 pseudogene pseudo 100628606 NR_039536 ENSMUSG00000105841 Mir3960 mmu-mir-3960 - 2 B|2 22.09 cM microRNA 3960 ncRNA 105245097 XM_011243103 Gm40595 - - 10 A1|10 predicted gene, 40595 protein-coding 102637220 Gm34089 - - 8|8 predicted gene, 34089 ncRNA 60857 D6Mit15 - - 6 77.7 cM DNA segment, Chr 6, Massachusetts Institute of Technology 15 unknown 260398 Thypr2 - - 1 28.97 cM thymocyte proliferative response 2 unknown 109581 Es6 Es-6 - - esterase 6 protein-coding 16341 Mm.289992 NM_008388 ENSMUSG00000022336 Eif3e 48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48 - 15 B3.2|15 16.73 cM eukaryotic translation initiation factor 3, subunit E protein-coding 68204 Mm.443536 NR_027901 ENSMUSG00000107722 2900060B14Rik - - 1|1 E2.3 RIKEN cDNA 2900060B14 gene ncRNA 100035377 Smtw1 - - - small testis weight 1 unknown 105243416 XR_870787 Gm39344 - - 9 B|9 predicted gene, 39344 ncRNA 71856 Mm.330770 NM_027961 ENSMUSG00000076434 Wfdc3 1700015L13Rik|1700127F16Rik - 2|2 H3 WAP four-disulfide core domain 3 protein-coding 321003 Mm.390833 NM_177310 ENSMUSG00000022401 Xpnpep3 APP3|E430012M05Rik - 15|15 E1 X-prolyl aminopeptidase 3, mitochondrial protein-coding 100418119 Gm19012 - - 17|17 A3.3 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 102640428 Gm36491 - - 4|4 predicted gene, 36491 ncRNA 108168671 XM_017318882 LOC108168671 - - Y D Y-linked testis-specific protein 1-like protein-coding 385327 Gm5381 EG385327 - X|X A1.1 makorin, ring finger protein, 2 pseudogene pseudo 110615 Ihpd - - - interspecific hybrid placental dysplasia protein-coding 100036446 Dice1a Dice1.1 - - determination of interleukin 4 commitment 1a unknown 257902 Mm.377292 NM_001011749 ENSMUSG00000073900 Olfr704 MOR283-12P - 7|7 E3 olfactory receptor 704 protein-coding 20363 Mm.392203 NM_009155 ENSMUSG00000064373 Selenop AU018766|D15Ucla1|Se-P|Sepp1|selp - 15 A1|15 1.84 cM selenoprotein P protein-coding 235380 Mm.93636 NM_172771 ENSMUSG00000041268 Dmxl2 6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856 - 9|9 A5.3 Dmx-like 2 protein-coding 105243871 Gm39599 - - 1|1 predicted gene, 39599 ncRNA 52742 D9Wsu1e - - - DNA segment, Chr 9, Wayne State University 1, expressed unknown 102634683 XR_390848 LOC102634683 - - 4 D3 uncharacterized LOC102634683 ncRNA 24000 Mm.4420 NM_011877 ENSMUSG00000021009 Ptpn21 PTPD1|PTPRL10 - 12|12 E protein tyrosine phosphatase, non-receptor type 21 protein-coding 100502845 Mm.420625 Gm19409 - - 5|5 16.9 cM predicted gene, 19409 unknown 258969 Mm.223360 NM_146967 ENSMUSG00000075097 Olfr1226 MOR233-2 - 2|2 E1 olfactory receptor 1226 protein-coding 11833 Mm.273175 NM_007474 ENSMUSG00000030762 Aqp8 AI255744|AQP-8 - 7 67.42 cM|7 F3 aquaporin 8 protein-coding 73674 Mm.270376 NM_028599 ENSMUSG00000025995 Wdr75 1300003A18Rik|2410118I19Rik|C77608 - 1|1 C1.1 WD repeat domain 75 protein-coding 105244289 XR_866723 Gm39928 - - 2 F1|2 predicted gene, 39928 ncRNA 62172 D14Mit79 - - 14 20.84 cM DNA segment, Chr 14, Massachusetts Institute of Technology 79 unknown 102635583 XR_376753 Gm32877 Gm43641 - 5 A1|5 predicted gene, 32877 ncRNA 108281 Lyn-ps1 - - - Yamaguchi sarcoma viral (v-yes-1) oncogene homolog, pseudogene 1 pseudo 102638545 Mm.262665 XR_378374 Gm35082 Gm44791 - 7 E2|7 predicted gene, 35082 ncRNA 100042371 Gm3807 - - 11 E2|11 predicted gene 3807 unknown 319635 Mm.442403 A930004J17Rik - - 4|4 RIKEN cDNA A930004J17 gene protein-coding 103743 Mm.27682 NM_029537 ENSMUSG00000035413 Tmem98 6530411B15Rik|AI463522 - 11|11 B5 transmembrane protein 98 protein-coding 98208 AA517459 - - - expressed sequence AA517459 unknown 102642939 Mm.351553 LOC102642939 - - - uncharacterized LOC102642939 ncRNA 108168364 Gm46611 - - 18 A2|18 predicted gene, 46611 pseudo 667792 Gm8815 EG667792 - 17|17 B1 predicted gene 8815 pseudo 414801 Mm.29457 NM_001001738 ENSMUSG00000044948 Itprip 4833424O12Rik|DANGER - 19|19 D1 inositol 1,4,5-triphosphate receptor interacting protein protein-coding 100416109 Gm17920 - - 17|17 D tubulin, beta 5 pseudogene pseudo 677155 Gm15703 - - 16 B2|16 ribonuclease H2, large subunit pseudogene pseudo 242291 Mm.218889 NM_177730 ENSMUSG00000066324 Impad1 1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP - 4|4 A1 inositol monophosphatase domain containing 1 protein-coding 111548 Pmv32 Pmv-32 - - polytropic murine leukemia virus 32 other 76823 Mm.398400 2410164B09Rik - - - RIKEN cDNA 2410164B09 gene protein-coding 58246 Mm.245527 NM_021435 ENSMUSG00000018999 Slc35b4 4930474D06Rik|AB041549|AW494345 - 6|6 A3.3 solute carrier family 35, member B4 protein-coding 66233 Mm.29142 NM_023178 ENSMUSG00000009640 Dmap1 1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425 - 4|4 D2.1 DNA methyltransferase 1-associated protein 1 protein-coding 100039112 Gm14938 - - X|X E1 lactate dehydrogenase A pseudogene pseudo 666394 Gm8080 EG666394 - 1|1 E2.1 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3D pseudogene pseudo 102637003 XR_380634 Gm33919 - - 10 C1|10 predicted gene, 33919 ncRNA 100044404 Selenok-ps2 Gm17763 - 5|5 G2 selenoprotein K, pseudogene 2 pseudo 102632581 Gm30619 - - 10 A4|10 UPF0762 protein C6orf58 homolog pseudo 57752 Mm.86322 NM_021314 ENSMUSG00000030852 Tacc2 mKIAA4180 - 7|7 F3 transforming, acidic coiled-coil containing protein 2 protein-coding 100416706 Mm.478045 NM_001163246 ENSMUSG00000058093 Zfp729b AA987127 - 13|13 B3 zinc finger protein 729b protein-coding 68094 Mm.417338 NM_198160 ENSMUSG00000025369 Smarcc2 5930405J04Rik - 10|10 D3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 protein-coding 12211 Mm.442564 NM_007566 ENSMUSG00000024073 Birc6 A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289 - 17|17 E2 baculoviral IAP repeat-containing 6 protein-coding 109280108 LOC109280108 Mm1324 - - VISTA enhancer mm1324 biological-region 102641179 XR_869119 Gm38539 - - 6 B3|6 predicted gene, 38539 ncRNA 102638441 XR_385497 Gm35007 - - 17 A3.3|17 predicted gene, 35007 ncRNA 20262 Mm.2319 NM_009133 ENSMUSG00000027581 Stmn3 9330161A03Rik|AI604839|R75323|Sclip - 2|2 H4 stathmin-like 3 protein-coding 319894 Mm.59196 NR_045190 ENSMUSG00000086369 E330017L17Rik - - 4|4 D2.2 RIKEN cDNA E330017L17 gene ncRNA 69847 Mm.23656 NM_175638 ENSMUSG00000035112 Wnk4 2010002J11Rik|Pha2b|Prkwnk4 - 11|11 D WNK lysine deficient protein kinase 4 protein-coding 100417513 Gm18661 - - 3|3 A1 predicted gene, 18661 pseudo 381852 Mm.305150 NM_001034877 Gm5155 EG381852 - 7 A2|7 predicted gene 5155 protein-coding 215029 Mm.461202 NM_172156 ENSMUSG00000062201 Prl3d3 Ghd6|PL-Ig|Plig - 13|13 A3.1 prolactin family 3, subfamily d, member 3 protein-coding 100038696 Mm.484833 Gm10866 - - 15 E1-E2|15 predicted gene 10866 unknown 102636468 XR_383685 Gm33525 - - 14 E2.1|14 predicted gene, 33525 ncRNA 56445 Mm.475573 NM_019794 ENSMUSG00000031701 Dnaja2 1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3 - 8|8 C3 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 100750327 Gm10226 - - 17 11.4 cM predicted gene 10226 protein-coding 102636645 Gm33653 - - Y|Y predicted gene, 33653 pseudo 105246245 XR_876712 LOC105246245 - - 17 A3.3 uncharacterized LOC105246245 ncRNA 105247233 Gm42367 - - 4|4 predicted gene, 42367 protein-coding 628808 Vmn2r-ps99 EG628808|EG665915|Vmn2r-ps101 - 13|13 B3 vomeronasal 2, receptor, pseudogene 99 pseudo 492898 Fembrs5 - - 1 88.97 cM femur breaking strength 5 unknown 100504717 Mm.394445 NR_040444 ENSMUSG00000085181 Gm12709 - - 4 C6|4 47.24 cM predicted gene 12709 ncRNA 56338 Mm.410189 NM_023719 ENSMUSG00000038393 Txnip 1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1 - 3 F2.1|3 41.93 cM thioredoxin interacting protein protein-coding 100043164 Gm4276 - - 17|17 B1 phosphatidylethanolamine binding protein 1 pseudogene pseudo 109918 Cypr1 - - 16 30.92 cM cytokine production 1 protein-coding 75667 Mm.45821 NM_029379 ENSMUSG00000040541 Tmem225 1700030E15Rik|Tnen225 - 9|9 A5.1 transmembrane protein 225 protein-coding 62662 D15Mit112 - - 15 15.17 cM DNA segment, Chr 15, Massachusetts Institute of Technology 112 unknown 67803 Mm.21687 NM_172397 ENSMUSG00000040699 Limd2 0610025L06Rik|AI413966 - 11|11 E1 LIM domain containing 2 protein-coding 104738 AA589515 - - - expressed sequence AA589515 unknown 100036371 Clas4 - - - carcinogen-induced lung adenoma susceptibility 4 unknown 666760 Gm11809 - - 4|4 A1 PRP3 pre-mRNA processing factor 3 homolog pseudogene pseudo 77605 Mm.27624 NM_029938 ENSMUSG00000041126 H2afv C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre - 11|11 A1 H2A histone family, member V protein-coding 102632403 XR_878178 ENSMUSG00000082035 Rpl17-ps8 Gm14934 - X C3|X 42.69 cM ribosomal protein L17, pseudogene 8 pseudo 61983 D9Mit299 - - 9 26.83 cM DNA Segment, Chr 9, Massachusetts Institute of Technology 299 unknown 100042201 XM_017318775 ENSMUSG00000099856 Gm20906 - - Y|Y E predicted gene, 20906 protein-coding 102634911 XR_388778 Gm32384 - - 11 B3|11 predicted gene, 32384 ncRNA 100043002 XR_878063 Llph-ps2 Gm14535 - X|X A1.1 LLP homolog, pseudogene 2 pseudo 68314 Mm.46190 NM_197983 ENSMUSG00000046840 Hnf4aos 0610008F07Rik - 2|2 H3 hepatic nuclear factor 4 alpha, opposite strand ncRNA 100042584 Mm.451696 NR_033526 ENSMUSG00000082315 Gm16523 A130054J05Rik - 2|2 B mitochondrial ribosomal protein L40 pseudogene pseudo 100035538 Cia17 mCia17 - - collagen induced arthritis QTL 17 unknown 665918 XM_001472765 LOC665918 - - Y|Y Y-linked testis-specific protein 1 protein-coding 107502 Mnp - - - modifier of Niemann Pick type C1 unknown 102632928 XR_378685 Gm17215 - - 8 A1.1|8 2.65 cM predicted gene 17215 ncRNA 665095 Mm.331717 NM_001104927 ENSMUSG00000082932 Cyp2j8 Cyp2j8-ps - 4|4 C5 cytochrome P450, family 2, subfamily j, polypeptide 8 protein-coding 105244587 XR_867754 Gm40178 - - 3 H3|3 predicted gene, 40178 ncRNA 105245213 XR_871836 Gm40697 - - 10 C1|10 predicted gene, 40697 ncRNA 621763 Gm6257 EG621763 - 9|9 C DnaJ (Hsp40) homolog, subfamily C, member 17 pseudogene pseudo 634322 Mm.425908 Trav14d-3-dv8 TCRAV2.5|TRAV14D-3|Trav14d-3/dv8 - 14|14 C2 T cell receptor alpha variable 14D-3-DV8 other 330921 Mm.479701 NM_001033421 ENSMUSG00000074452 Pate2 Gm846|Pate-M|mANLP1 - 9|9 A4 prostate and testis expressed 2 protein-coding 19742 rh - - - rachiterata unknown 62427 D10Mit212 - - 10 7.82 cM DNA segment, Chr 10, Massachusetts Institute of Technology 212 unknown 102638221 XR_375329 Gm14637 - - 2 H3|2 91.91 cM predicted gene 14637 ncRNA 108168666 XM_017318877 LOC108168666 - - Y E Y-linked testis-specific protein 1-like protein-coding 19255 Mm.260433 NM_008977 ENSMUSG00000024539 Ptpn2 AI325124|Ptpt|TC-PTP - 18|18 E1 protein tyrosine phosphatase, non-receptor type 2 protein-coding 97356 C77495 - - - expressed sequence C77495 protein-coding 619764 Gm6098 - - 3 E3|3 predicted gene 6098 protein-coding 105246617 XR_877980 Gm41884 - - 19 D3|19 predicted gene, 41884 ncRNA 225594 Mm.329460 NM_001034859 ENSMUSG00000068606 Gm4841 EG225594|Ifgga3 - 18 D3|18 predicted gene 4841 protein-coding 111981 Eye1 - - - eye weight 1 unknown 100504064 Gm20040 - - 16 B2|16 21.11 cM 60S ribosomal protein L28-like pseudo 244281 Mm.422761 NM_001081397 ENSMUSG00000039057 Myo16 BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865 - 8|8 A1.1 myosin XVI protein-coding 236785 Mm.377256 NM_207631 ENSMUSG00000067971 Olfr1321 MOR264-26 - X|X A5 olfactory receptor 1321 protein-coding 108168656 XM_017318867 LOC108168656 - - Y D Y-linked testis-specific protein 1-like protein-coding 433326 Gm5529 EG433326 - 1|1 C4 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 pseudogene pseudo 108167974 LOC108167974 - - 12 F1 40S ribosomal protein S6-like pseudo 625109 Mm.469845 NM_001103365 ENSMUSG00000092162 Vmn2r86 EG625109 - 10|10 D3 vomeronasal 2, receptor 86 protein-coding 102637057 XR_388578 Gm33963 - - 11 A5|11 predicted gene, 33963 ncRNA 112047 Start2 - - 4 57.76 cM startle response 2 unknown 110953 Atp5g1-rs3 - - - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C (subunit 9), isoform 1, related sequence 3 protein-coding 546913 Mm.469875 NM_001104637 ENSMUSG00000095486 Vmn2r22 EG546913 - 6|6 F2 vomeronasal 2, receptor 22 protein-coding 105245451 XR_873140 Gm40903 - - 13 A1|13 predicted gene, 40903 ncRNA 100036460 Pbat1 Pbat-1 - 17 17.98 cM platelet-binding antibody-associated thrombocytopenia 1 unknown 78916 4930425K24Rik - - 12|12 F1 RIKEN cDNA 4930425K24 gene protein-coding 233406 Mm.227274 NM_145150 ENSMUSG00000038943 Prc1 D7Ertd348e - 7 D2|7 45.62 cM protein regulator of cytokinesis 1 protein-coding 102638505 Gm35053 - - 14|14 predicted gene, 35053 pseudo 102631942 XR_380790 Gm30145 - - 10 D1|10 predicted gene, 30145 ncRNA 74354 Mm.127952 NM_028886 ENSMUSG00000056215 Lrguk 4921528H16Rik - 6|6 A3.3 leucine-rich repeats and guanylate kinase domain containing protein-coding 638698 Gm7248 EG638698 - 4 C6|4 U2 small nuclear ribonucleoprotein B pseudogene pseudo 101056136 Mm.489000 NR_105055 ENSMUSG00000092152 Gm17026 - - 14 B|14 22.41 cM predicted gene 17026 ncRNA 108168104 XR_001781015 Gm46433 - - 13 C3|13 predicted gene, 46433 ncRNA 52016 Mm.122725 D19Ertd409e - - 19 38.75 cM DNA segment, Chr 19, ERATO Doi 409, expressed protein-coding 104142 Len2 Len-2 - - eye lens protein 2 protein-coding 98491 AL022878 - - - expressed sequence AL022878 unknown 780931 Mm.335723 Ighv1-53 AB069917|Igmv23|Jh2|Jh4 - 12|12 F2 immunoglobulin heavy variable 1-53 other 102640495 Gm17657 - - 17|17 15.41 cM predicted gene, 17657 protein-coding 15926 Mm.9925 NM_010497 ENSMUSG00000025950 Idh1 AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc - 1 C2|1 32.91 cM isocitrate dehydrogenase 1 (NADP+), soluble protein-coding 62689 D16Mit128 - - 16 53.72 cM DNA segment, Chr 16, Massachusetts Institute of Technology 128 unknown 330132 Mm.319769 A430057O09 - - 5|5 E3 uncharacterized protein A430057O09 unknown 61549 D9Mit144 - - 9 34.43 cM DNA segment, Chr 9, Massachusetts Institute of Technology 144 unknown 74720 Mm.159318 NM_029070 ENSMUSG00000022715 Tmem114 4930511J11Rik|Cldn26 - 16|16 A1 transmembrane protein 114 protein-coding 74852 Mm.159336 XR_001781666 4930402D18Rik - - 15|15 D1 RIKEN cDNA 4930402D18 gene ncRNA 108275 Eif4a-ps5 - - - eukaryotic translation initiation factor 4A, pseudogene 5 pseudo 54673 Mm.271775 NM_019464 ENSMUSG00000037062 Sh3glb1 AA409932|AI314629|AU015566|Bif-1|mKIAA0491 - 3|3 H2 SH3-domain GRB2-like B1 (endophilin) protein-coding 61959 D7Mit328 - - 7 57.7 cM DNA Segment, Chr 7, Massachusetts Institute of Technology 328 unknown 101055956 Gm29753 - - 15 A1|15 predicted gene, 29753 pseudo 381290 Mm.188617 NM_213616 ENSMUSG00000026463 Atp2b4 Pmca4 - 1 E4|1 57.95 cM ATPase, Ca++ transporting, plasma membrane 4 protein-coding 102467419 n-TAagc16 n-Ta16 - 13 A3.1|13 nuclear encoded tRNA alanine 16 (anticodon AGC) tRNA 77014 Mm.392348 2700079J08Rik - - 2|2 RIKEN cDNA 2700079J08 gene protein-coding 100417186 Gm15073 - - X|X F2 crumbs homolog 1 pseudogene pseudo 329480 Mm.246679 NR_015462 ENSMUSG00000074987 Wt1os 6030498F17|AI314831|Wt1-as - 2|2 E2 Wilms tumor 1 homolog, opposite strand ncRNA 102637747 Gm34479 - - 9|9 predicted gene, 34479 ncRNA 20370 Mm.229330 NM_021286 ENSMUSG00000000632 Sez6 BSRP-C|D11Bhm177e|sez-6 - 11 B5|11 46.74 cM seizure related gene 6 protein-coding 100418295 Gm19123 - - 1|1 A5 predicted gene, 19123 pseudo 102635654 XR_382266 Gm32939 - - 13 A4|13 predicted gene, 32939 ncRNA 102633258 Mm.50673 XR_001780936 Gm31126 - - 13 A5|13 predicted gene, 31126 ncRNA 100038649 Mm.483598 Gm10690 - - - predicted gene 10690 unknown 382867 Mm.343728 NM_001013777 ENSMUSG00000044519 Zfp488 Gm1206|Znf488 - 14|14 B zinc finger protein 488 protein-coding 105247144 XR_881359 Gm42296 - - 4 C1|4 predicted gene, 42296 ncRNA 74145 Mm.235105 NM_028784 ENSMUSG00000039109 F13a1 1200014I03Rik|AI462306|F13a - 13|13 A3.3 coagulation factor XIII, A1 subunit protein-coding 108167539 XR_001778595 Gm46044 - - 8 C2|8 predicted gene, 46044 ncRNA 258590 Mm.223116 NM_146597 ENSMUSG00000056863 Olfr702 MOR260-4 - 7|7 E3 olfactory receptor 702 protein-coding 108619 Iap5rb17 - - - intracisternal A-type particle, U5 region, SINE repeat b-17 other 108345 Bdv1 Bdv-1 - - BALB/c defective provirus 1 other 100036182 Tshp14 QTL-TSH13.2 - - tooth shape 14 unknown 62440 D12Mit266 - - 12 2.65 cM DNA segment, Chr 12, Massachusetts Institute of Technology 266 unknown 241633 Mm.222235 NM_001080944 ENSMUSG00000060131 Atp8b4 Im - 2|2 F1 ATPase, class I, type 8B, member 4 protein-coding 319333 C030012N03Rik - - 2|2 RIKEN cDNA C030012N03 gene protein-coding 60732 D1Mit18 - - 1 26.99 cM DNA segment, Chr 1, Massachusetts Institute of Technology 18 unknown 17916 Mm.42019 NM_053214 ENSMUSG00000024300 Myo1f C330006B10Rik - 17 B1|17 17.98 cM myosin IF protein-coding 93857 D14Jor2 - - 14 19.12 cM DNA segment, Chr 14, Barbara Jordan 2 unknown 102637397 XR_391916 ENSMUSG00000101681 Gm28522 CH36-136L6.12 - Y B|Y predicted gene 28522 ncRNA 112354 Alcp1 - - 2 27.37 cM alcohol preference locus 1, male specific unknown 382986 Gm5213 - - 15 B3.1|15 ferritin light chain 1 pseudogene pseudo 102633372 XR_391633 Gm31213 - - 7 D2|7 predicted gene, 31213 ncRNA 102635047 XR_879969 Gm32483 - - 11 B3|11 predicted gene, 32483 ncRNA 105245678 XR_874217 Gm41095 - - 14 A1|14 predicted gene, 41095 ncRNA 61032 D8Mit124 - - 8 7.59 cM DNA segment, Chr 8, Massachusetts Institute of Technology 124 unknown 108167631 XR_001779019 Gm46096 - - 1 C5|1 predicted gene, 46096 ncRNA 56557 D6Ott8 - - 6 63.44 cM DNA segment, Chr 6, Animal Research Centre, Ottawa 8 unknown 61577 DXMit170 - - X 45.87 cM DNA segment, Chr X, Massachusetts Institute of Technology 170 unknown 258423 Mm.377492 NM_146431 ENSMUSG00000063106 Olfr1510 MOR223-6 - 14|14 C2 olfactory receptor 1510 protein-coding 236852 Mm.115316 NM_001085506 ENSMUSG00000043453 Magea10 - - X|X A7.3 melanoma antigen family A, 10 protein-coding 105246273 XR_876797 Gm41579 - - 17 B1|17 predicted gene, 41579 ncRNA 27384 Mm.27447 NM_013778 ENSMUSG00000021213 Akr1c13 mKIAA4014 - 13|13 A1 aldo-keto reductase family 1, member C13 protein-coding 27835 D2Dcr21 - - - DNA segment, Chr 2, Derry C. Roopenian 21 unknown 629865 Ighv1-15 Gm16858 - 12|12 F2 immunoglobulin heavy variable 1-15 other 12614 Mm.22680 NM_009886 ENSMUSG00000016028 Celsr1 Adgrc1|Crsh|Scy|crash - 15 E2|15 40.42 cM cadherin, EGF LAG seven-pass G-type receptor 1 protein-coding 105246417 XR_877346 Gm41707 - - 18 B3|18 predicted gene, 41707 ncRNA 665933 Gm7853 EG665933 - 14|14 B predicted gene 7853 pseudo 100038514 Mm.331495 NM_001243100 Gm11837 - - 4 A2|4 predicted gene 11837 protein-coding 493010 Orgwq7 - - 9 20.76 cM organ weight QTL 7 unknown 105244351 Gm39977 - - 2|2 predicted gene, 39977 ncRNA 546802 Gm5979 EG546802 - 3|3 F1 high mobility group box 3 pseudogene pseudo 70995 4931412I15Rik - - 7|7 RIKEN cDNA 4931412I15 gene protein-coding 100040811 Gm11919 - - 4|4 A4 ribosomal protein S6 pseudogene pseudo 52739 D7Wsu1e - - - DNA segment, Chr 7, Wayne State University-1, expressed unknown 224742 Mm.329022 NM_013854 ENSMUSG00000038762 Abcf1 AU041969|Abc50|D17Wsu166e|GCN20 - 17 B1|17 18.8 cM ATP-binding cassette, sub-family F (GCN20), member 1 protein-coding 105246454 XR_877461 Gm41741 - - 18 D3|18 predicted gene, 41741 ncRNA 328061 Mm.56067 NR_110487 ENSMUSG00000112792 Gm38407 4931412M21 - 12|12 A1.1 predicted gene, 38407 ncRNA 62767 D16Mit179 - - 16 47.34 cM DNA segment, Chr 16, Massachusetts Institute of Technology 179 unknown 404461 Olfr1050-ps1 GA_x5J8B7TUS7D-1-861|GA_x5J8B7W3KVV-42515-42818|MOR194-2_p - 2|2 D olfactory receptor 1050, pseudogene 1 pseudo 230696 Mm.473722 NM_001012400 ENSMUSG00000078584 AU022252 AI450326 - 4|4 D2.1 expressed sequence AU022252 protein-coding 76025 Mm.177551 NM_029502 ENSMUSG00000025575 Cant1 5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy - 11 E2|11 83.15 cM calcium activated nucleotidase 1 protein-coding 102633342 XR_387654 Gm31190 - - 5 F|5 predicted gene, 31190 ncRNA 109988 Ri1 Ri-1 - - recognition of identity 1 unknown 384589 Mm.454021 NM_001256066 ENSMUSG00000078757 Scgb1b29 Abpa29|Abpa29_a7|EG384589|Gm5326 - 7|7 B1 secretoglobin, family 1B, member 29 protein-coding 381083 Gm16194 Gm1607 - 17 A3.3|17 predicted gene 16194 protein-coding 382038 Mm.334891 NM_001029876 ENSMUSG00000031976 Urb2 C77575|mKIAA0133 - 8|8 E2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) protein-coding 105245780 XR_874705 Gm15918 - - 14 D1|14 33.34 cM predicted gene 15918 ncRNA 12454 Mm.474441 NM_009832 ENSMUSG00000021258 Ccnk AW123198|AW413594|CPR4|CycK - 12 F1|12 59.23 cM cyclin K protein-coding 16614 Klk1b14-ps Klk-ps11|Klk14|mGk-14 - 7 B3|7 28.56 cM kallikrein 1-related peptidase b14, pseudogene pseudo 677457 Gm9717 - - 7 B3|7 MAS-related GPR, member A4 pseudogene pseudo 85073 D12Mit1009 D7Mit36 - 12 2.8 cM DNA segment, Chr 12, Massachusetts Institute of Technology 1009 unknown 56742 Mm.389499 NM_019976 ENSMUSG00000068744 Psrc1 5430413I02Rik|AL033312|Dda3 - 3|3 F3 proline/serine-rich coiled-coil 1 protein-coding 100043826 Mrps36-ps1 Gm19255|Gm4676 - 17|17 C mitichondrial ribosomal protein S36, pseudogene 1 pseudo 228801 Mm.3783 NM_153418 ENSMUSG00000027485 Bpifb1 Lplunc1 - 2|2 H1 BPI fold containing family B, member 1 protein-coding 108168218 LOC108168218 - - 15 E1 60S ribosomal protein L29 pseudogene pseudo 69470 Mm.200889 NM_175145 ENSMUSG00000034850 Tmem127 2310003P10Rik|AI314202|AI317350 - 2 F1|2 61.87 cM transmembrane protein 127 protein-coding 269134 Gm5049 EG269134 - 1|1 H2.1 glutamic pyruvic transaminase, soluble pseudogene pseudo 232400 Mm.259234 NM_001001179 ENSMUSG00000047228 A2ml1 Ovos|Ovos2 - 6|6 F3 alpha-2-macroglobulin like 1 protein-coding 105245866 Mm.390754 NM_001039531 ENSMUSG00000075463 Gm15735 4930594M22Rik|F930011C10Rik - 14 E5|14 66.04 cM predicted gene 15735 ncRNA 100035423 Nhil3 - - - non-heme iron levels 3 unknown 73974 Mm.401934 4930452L12Rik - - 10|10 RIKEN cDNA 4930452L12 gene protein-coding 329470 Mm.486910 NM_183220 ENSMUSG00000040272 Accs 2610203E10Rik|Phacs - 2|2 E1 1-aminocyclopropane-1-carboxylate synthase (non-functional) protein-coding 28176 D16Ium35e D16Ium26|D16Ium26e|D16Ium35 - - DNA segment, Chr 16, Indiana University Medical 35, expressed unknown 373864 Mm.194116 NM_025685 ENSMUSG00000045672 Col27a1 5730512J02Rik|AI449266 - 4|4 B3 collagen, type XXVII, alpha 1 protein-coding 100379145 Mm.484711 NR_033336 ENSMUSG00000064451 Snora23 MBI-1 - 7 E3|7 57.7 cM small nucleolar RNA, H/ACA box 23 snoRNA 27530 D0Mnp2 MUS241-1 - - DNA segment, Montpellier 2 unknown 110120423 LOC110120423 - - - VISTA enhancer mm1092 biological-region 100217451 Mm.484708 NR_028546 ENSMUSG00000064563 Snora7a MBI-141 - 6 E3|6 small nucleolar RNA, H/ACA box 7A snoRNA 108168761 XR_001783311 Gm46743 - - 2 C1.1|2 predicted gene, 46743 ncRNA 240665 Mm.309 NM_172839 ENSMUSG00000025010 Ccnj D430039C20Rik - 19|19 C3 cyclin J protein-coding 112214173 LOC112214173 - - - spermatogenesis associated 2 pseudogene pseudo 140640 Fembm1 - - - femoral bone morphometry 1 unknown 102637063 XR_378871 Gm33968 Gm45347 - 8 A4|8 predicted gene, 33968 ncRNA 235330 Mm.177413 NM_172770 ENSMUSG00000040219 Ttc12 E330017O07Rik - 9|9 A5.3 tetratricopeptide repeat domain 12 protein-coding 102631874 Mm.138830 XR_375857 Gm20627 - - 3 F2.1|3 41.7 cM predicted gene 20627 ncRNA 107975 Mm.234923 NM_153129 ENSMUSG00000024855 Pacs1 AI325977 - 19|19 A phosphofurin acidic cluster sorting protein 1 protein-coding 666693 Gm8242 EG666693 - 18 B3|18 predicted gene 8242 pseudo 83995 Mm.156952 NM_032006 ENSMUSG00000043089 Mmp1a MMP-1a|Mcol-A|Mcola - 9|9 A1 matrix metallopeptidase 1a (interstitial collagenase) protein-coding 677233 Scgb1b6-ps Abpa6-ps|Gm9709 - 7|7 B1 secretoglobin, family 1B, member 6, pseudogene pseudo 245572 Mm.137011 NM_145224 ENSMUSG00000031241 Tbx22 D230020M15Rik - X D|X 47.59 cM T-box 22 protein-coding 383080 Gm5218 EG383080 - 15|15 E1 predicted gene 5218 protein-coding 77315 Mm.404883 C030008P14Rik - - 8|8 RIKEN cDNA C030008P14 gene protein-coding 62260 D18Mit69 - - 18 14.17 cM DNA segment, Chr 18, Massachusetts Institute of Technology 69 unknown 333088 Mm.332961 NM_001029985 ENSMUSG00000059022 Kcp AW060220|CRIM-2|Crim2|Gm793|KCP-1 - 6|6 A3.3 kielin/chordin-like protein protein-coding 408069 C330013J06Rik - - - RIKEN cDNA C330013J06 gene protein-coding 105247070 XR_880913 Gm42243 - - 5 B1|5 predicted gene, 42243 ncRNA 108168333 LOC108168333 - - 17 A1 28S ribosomal protein S18c, mitochondrial pseudogene pseudo 78938 Mm.11935 NM_030236 ENSMUSG00000037536 Fbxo34 2900057B08Rik|5830426G16Rik - 14|14 C1 F-box protein 34 protein-coding 107324 Mm.38205 AV313155 - - - expressed sequence AV313155 unknown 75308 Mm.108657 4930557B21Rik - - 19|19 RIKEN cDNA 4930557B21 gene protein-coding 320749 Mm.396688 NR_028416 D630041G03Rik - - 7|7 A1 RIKEN cDNA D630041G03 gene ncRNA 53119 M-01174 - - - DNA segment, M-01174 unknown 62128 D13Mit35 - - 13 67.21 cM DNA segment, Chr 13, Massachusetts Institute of Technology 35 unknown 66590 Mm.292517 NM_025648 ENSMUSG00000003808 Farsa 0610012A19Rik|Farsla|pheRS - 8|8 C2-C3 phenylalanyl-tRNA synthetase, alpha subunit protein-coding 493104 Dntcs2 - - - dental caries susceptibility 2 unknown 268747 Mm.151577 NM_001024645 ENSMUSG00000022211 Carmil3 Lrrc16b|mFLJ00240 - 14|14 C3 capping protein regulator and myosin 1 linker 3 protein-coding 73861 4930428B07Rik - - 11|11 RIKEN cDNA 4930428B07 gene protein-coding 105243704 XR_878157 Gm39526 Gm44592 - X C3|X predicted gene, 39526 ncRNA 545140 Mm.432690 NM_001011733 ENSMUSG00000075427 Olfr288 C85333|GA_x5J8B7W76D0-7609197-7608973|MOR286-3P - 15|15 F1 olfactory receptor 288 protein-coding 105246099 XR_876009 Gm41442 - - 16 B2|16 predicted gene, 41442 ncRNA 102632906 Gm30860 - - 12|12 predicted gene, 30860 ncRNA 112056 Bomb1 - - 3 56.89 cM bone marrow pre-B 1 unknown 105244482 XR_867409 Gm40083 - - 3 F1|3 predicted gene, 40083 ncRNA 28024 D5Wsu148e - - 5 20.21 cM DNA segment, Chr 5, Wayne State University 148, expressed unknown 15111 Mm.430844 NM_010402 ENSMUSG00000038193 Hand2 AI225906|AI661148|Ehand2|Hed|Th2|Thing2|bHLHa26|dHAND - 8 B2|8 29.8 cM heart and neural crest derivatives expressed 2 protein-coding 102467440 n-TTagt8 n-Tt8 - 11 B3|11 nuclear encoded tRNA threonine 8 (anticodon AGT) tRNA 102636773 XR_390374 Gm33752 - - 4 A1|4 predicted gene, 33752 ncRNA 16473 jt syn - - joined toes unknown 69046 Mm.7884 NM_026921 ENSMUSG00000044792 Isca1 1810010A06Rik|Hbld2 - 13|13 B2 iron-sulfur cluster assembly 1 protein-coding 23984 Mm.87161 NM_011866 ENSMUSG00000023868 Pde10a - - 17|17 A1 phosphodiesterase 10A protein-coding 21090 T(15;16)1Kl - - - reciprocal translocation, Chr 15 and 16, Klein 1 other 62330 D6Mit184 - - 6 25.81 cM DNA segment, Chr 6, Massachusetts Institute of Technology 184 unknown 100035908 Tsiq3 Tsi3 - 15 45.31 cM T cell secretion of IL4 QTL 3 unknown 16869 Mm.4965 NM_008498 ENSMUSG00000018698 Lhx1 Lim1 - 11 C|11 51.31 cM LIM homeobox protein 1 protein-coding 100040605 Gm15710 - - 5 E2|5 ribosomal protein L13 pseudogene pseudo 73124 Mm.249232 NM_175193 ENSMUSG00000034109 Golim4 3110027H23Rik|GIMPC|GPP130|Golph4|P138 - 3|3 E3 golgi integral membrane protein 4 protein-coding 15015 Mm.464284 NM_001143689 ENSMUSG00000035929 H2-Q4 H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1 - 17 B1|17 18.65 cM histocompatibility 2, Q region locus 4 protein-coding 108169040 Gm42935 - - 5 B3|5 60S ribosomal protein L39 pseudogene pseudo 105244834 Gm40370 - - 6|6 predicted gene, 40370 ncRNA 102635856 Gm33092 - - 3 D|3 predicted gene, 33092 pseudo 100040983 Gm3077 - - 14|14 B predicted gene 3077 pseudo 100043086 Gm16456 EG667605|Vmn1r-ps82 - 7|7 A3 vomeronasal 1 receptor Vmn1r-ps82 pseudogene pseudo 54561 Mm.490573 NM_138742 ENSMUSG00000055733 Nap1l3 MB20 - X|X E3 nucleosome assembly protein 1-like 3 protein-coding 100042609 Gm3927 - - 19|19 C3 predicted gene 3927 pseudo 61407 D5Mit171 - - 5 28.85 cM DNA segment, Chr 5, Massachusetts Institute of Technology 171 unknown 105246573 XR_877853 Gm41845 - - 19 C3|19 predicted gene, 41845 ncRNA 110120397 LOC110120397 - - - VISTA enhancer mm116 biological-region 619334 Xlr4e-ps EG667446|Xlr4e - X|X A7.3 X-linked lymphocyte-regulated 4E, pseudogene pseudo 81018 Mm.22225 NM_030743 ENSMUSG00000006418 Rnf114 1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228 - 2|2 H3 ring finger protein 114 protein-coding 381269 Mm.422636 NM_001005423 ENSMUSG00000039395 Mreg Gm974|Wdt2|dsu - 1|1 C3 melanoregulin protein-coding 100628615 NR_039539 ENSMUSG00000092633 Mir3962 mmu-mir-3962|mu-mir-3962 - 1 H6|1 98.34 cM microRNA 3962 ncRNA 100418466 Gm11606 - - 1|1 C2 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3 pseudogene pseudo 105244272 XR_866660 Gm39913 - - 2 E5|2 predicted gene, 39913 ncRNA 110669 Yb1c - - - YB-1 DNA binding protein related sequence c protein-coding 106121 AA516830 - - - expressed sequence AA516830 unknown 100043698 Gm14003 - - 2|2 F1 predicted gene 14003 protein-coding 76925 Mm.33631 NM_001039593 ENSMUSG00000042800 Spata46 1700015E13Rik - 1|1 H3 spermatogenesis associated 46 protein-coding 105244674 Gm12867 - - 4|4 55.34 cM predicted gene 12867 ncRNA 28044 D3Wsu167e - - 3 45.52 cM DNA segment, Chr 3, Wayne State University 167, expressed unknown 20469 Mm.3072 NM_011379 ENSMUSG00000056917 Sipa1 Spa1 - 19 A|19 4.34 cM signal-induced proliferation associated gene 1 protein-coding 18946 Mm.10753 NM_018874 ENSMUSG00000042179 Pnliprp1 Plrp1 - 19 D2|19 54.49 cM pancreatic lipase related protein 1 protein-coding 102466643 NR_105821 ENSMUSG00000098500 Mir6396 Gm27938|mmu-mir-6396 - 8|8 E1 microRNA 6396 ncRNA 102632462 Mm.405186 XR_389552 Gm30529 - - 5 F|5 predicted gene, 30529 ncRNA 100416254 Gm18005 - - 4|4 C5 STAM binding protein pseudogene pseudo 21984 Mm.2372 NM_009411 ENSMUSG00000033834 Tpbpa AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo - 13 B2|13 32.57 cM trophoblast specific protein alpha protein-coding 106049963 Sfpe1 SNE - - sonic hedgehog floor plate enhancer 1 biological-region 13426 Mm.20893 NM_010063 ENSMUSG00000029757 Dync1i1 DH IC-1|DHIC-1|DIC|Dncic1|IC74 - 6 A1|6 2.26 cM dynein cytoplasmic 1 intermediate chain 1 protein-coding 116763 Cocrb10 - - - cocaine related behavior 10 unknown 245350 Mm.302695 NM_001272033 AA414768 - - X|X A1.1 expressed sequence AA414768 protein-coding 100039256 Hmgb1-ps1 - - 11|11 A5 high mobility group box 1, pseudogene 1 pseudo 330914 Mm.46683 NM_177379 ENSMUSG00000041444 Arhgap32 3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap - 9|9 A4 Rho GTPase activating protein 32 protein-coding 100036002 Tbt4 - - - trabecular bone traits 4 unknown 52029 Mm.372318 D17Ertd657e - - - DNA segment, Chr 17, ERATO Doi 657, expressed unknown 66403 Mm.272989 NM_025541 ENSMUSG00000019857 Asf1a 2310079C17Rik|C79052 - 10|10 B3 anti-silencing function 1A histone chaperone protein-coding 110573 Tcra-V15.3 - - - T cell receptor alpha, variable 15.3 other 105243539 XR_871284 Gm39431 - - 9 F3|9 predicted gene, 39431 ncRNA 105245408 XR_873200 Gm40869 - - 13 A3.2|13 predicted gene, 40869 ncRNA 104358 n-THgtg8 Trnah4|n-Th8 - 3|3 F2.1 nuclear encoded tRNA histidine 8 (anticodon GTG) tRNA 20302 Mm.1282 NM_011337 ENSMUSG00000000982 Ccl3 AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3 - 11 C|11 51.04 cM chemokine (C-C motif) ligand 3 protein-coding 104885 Mm.37751 NM_178915 ENSMUSG00000054013 Tmem179 AI839735 - 12|12 F1 transmembrane protein 179 protein-coding 100113411 Trav15-3 - - 14|14 C2 T cell receptor alpha variable 15-3 pseudo 100503831 Mm.483363 XR_105229 Gm38427 - - 8 B3.3|8 predicted gene, 38427 unknown 233231 Mm.297430 NM_205810 ENSMUSG00000070547 Mrgprb1 MrgB1 - 7|7 B4 MAS-related GPR, member B1 protein-coding 17741 TrnR - - - tRNA tRNA 105546 Mm.4266 AI646531 - - - expressed sequence AI646531 unknown 66240 Mm.58507 NM_021487 ENSMUSG00000090122 Kcne1l 1500015C14Rik|Kcne5|Mink - X|X F2 potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene protein-coding 110522 Igl1-r Igl-1r|Igl-Lo - - immunoglobulin lambda chain regulator other 12834 Mm.1949 NM_146007 ENSMUSG00000020241 Col6a2 Col6a-2 - 10 C1|10 39.32 cM collagen, type VI, alpha 2 protein-coding 100040131 Gm11765 - - 4|4 C3 predicted gene 11765 pseudo 105246131 XR_876147 Gm41470 - - 16 C1.3|16 predicted gene, 41470 ncRNA 74726 Mm.78172 NR_040451 ENSMUSG00000115177 4930523O13Rik 4921524H24Rik - 15|15 B3.3 RIKEN cDNA 4930523O13 gene ncRNA 18578 Mm.20181 NM_019840 ENSMUSG00000028525 Pde4b Dpde4|R74983|dunce - 4 C6|4 46.99 cM phosphodiesterase 4B, cAMP specific protein-coding 102639221 XR_375338 Gm35580 - - 2 H3|2 predicted gene, 35580 ncRNA 21646 Mm.486358 NM_022311 ENSMUSG00000038347 Tcte2 AI429268|Tcte-2 - 17 A1|17 8.9 cM t-complex-associated testis expressed 2 protein-coding 102467278 n-TCgca27 n-Tc27 - 6 B2.3|6 nuclear encoded tRNA cysteine 27 (anticodon GCA) tRNA 30055 Mm.142132 NM_013895 ENSMUSG00000020219 Timm13 D10Ertd378e|Tim9|Timm9 - 10 C1|10 39.72 cM translocase of inner mitochondrial membrane 13 protein-coding 108168513 Gm46705 - - Y B|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 28288 D10Jhu63 - - 10 38.83 cM DNA segment, Chr 10, Johns Hopkins University 63 unknown 77089 5730564C23Rik - - - RIKEN cDNA 5730564C23 gene protein-coding 68628 Mm.374815 NM_026791 ENSMUSG00000008167 Fbxw9 1110017H11Rik|Fbw9 - 8|8 C3 F-box and WD-40 domain protein 9 protein-coding 67465 Mm.156914 NM_026175 ENSMUSG00000002129 Sf3a1 1200014H24Rik|5930416L09Rik|AI159724 - 11|11 A1 splicing factor 3a, subunit 1 protein-coding 102632980 XR_382205 Gm30918 - - 13 A3.3|13 predicted gene, 30918 ncRNA 225497 Mm.329435 NM_001004061 ENSMUSG00000035420 Fam170a Gm93|Znfd - 18|18 D1 family with sequence similarity 170, member A protein-coding 102636512 XR_384067 Gm33557 - - 15 B3.1|15 predicted gene, 33557 ncRNA 52338 D8Ertd563e - - - DNA segment, Chr 8, ERATO Doi 563, expressed unknown 52449 D11Ggc3e - - - DNA segment, Chr 11, G. Consalez 3, expressed unknown 399604 C530014P21Rik - - - RIKEN cDNA C530014P21 gene protein-coding 78254 Mm.444632 Zfp286it 4921522H14Rik - 11|11 zinc finger protein 286, intronic transcript protein-coding 105243305 XR_879259 Gm39265 - - 8 E1|8 predicted gene, 39265 ncRNA 76195 Mm.297971 6330590E21Rik - - 10|10 RIKEN cDNA 6330590E21 gene protein-coding 105246881 Gm42086 - - 11|11 predicted gene, 42086 ncRNA 258143 Olfr637-ps1 MOR12-3P - 7|7 E3 olfactory receptor 637, pseudogene 1 pseudo 100039030 Mm.484125 NM_001104946 ENSMUSG00000082639 Gm2012 - - X A2|X predicted gene 2012 protein-coding 332397 Mm.186390 NM_178421 ENSMUSG00000072437 Nanos1 NOS-1 - 19|19 D3 nanos C2HC-type zinc finger 1 protein-coding 73173 Mm.87246 NM_130448 ENSMUSG00000037892 Pcdh18 3110038E07Rik|BB095589|PCDH68L - 3|3 C protocadherin 18 protein-coding 668723 Amy2-ps1 EG668723 - 3 F3|3 49.35 cM amylase 2, pseudogene 1 pseudo 244668 Mm.271668 NM_001081337 ENSMUSG00000001995 Sipa1l2 BC058408|mKIAA1389 - 8|8 E2 signal-induced proliferation-associated 1 like 2 protein-coding 100040532 Gm12967 - - 4|4 D2.2 predicted gene 12967 pseudo 100035827 Noan2 - - 5 85.17 cM nitrous oxide antinociception 2 unknown 102634285 XR_001783445 Gm31906 - - 2 E5|2 predicted gene, 31906 ncRNA 257805 Olfr756-ps1 GA_x5J8B7W5KGR-1221410-1222149 - 17|17 B1 olfactory receptor 756, pseudogene 1 pseudo 100035636 Ses6 - - 9 2.46 cM salmonella enteritidis susceptibility 6 unknown 83437 Mm.391589 Pgam1-ps1 - - 11|11 A3.1 phosphoglycerate mutase 1, pseudogene 1 pseudo 100503307 Mm.188008 NR_040429 ENSMUSG00000086610 Gm15408 - - 5 G3|5 89.16 cM predicted gene 15408 ncRNA 102638044 XR_378884 Gm34705 - - 8 A4|8 predicted gene, 34705 ncRNA 233904 Mm.435494 NM_010940 ENSMUSG00000042308 Setd1a BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1 - 7|7 F3 SET domain containing 1A protein-coding 14553 Gdap8 - - - ganglioside-induced differentiation-associated-protein 8 protein-coding 61604 D9Mit261 - - 9 42.67 cM DNA segment, Chr 9, Massachusetts Institute of Technology 261 unknown 51810 Mm.86589 NM_016805 ENSMUSG00000039630 Hnrnpu AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U - 1|1 H4 heterogeneous nuclear ribonucleoprotein U protein-coding 100216539 NR_030702 ENSMUSG00000077625 Snord4a - - 11 B5|11 small nucleolar RNA, C/D box 4A snoRNA 53694 D2Nds2 D0Nds25 - 2 5.05 cM DNA segment, Chr 2, Nuffield Department of Surgery 2 unknown 100039626 Gm2343 - - 1|1 H2.1 GC-rich promoter binding protein 1-like 1 pseudogene pseudo 105245792 XR_874730 Gm41184 - - 14 D1|14 predicted gene, 41184 ncRNA 630294 Mm.484916 NM_001177467 ENSMUSG00000092243 Gm7030 EG630294|H2-t9 - 17|17 B1 predicted gene 7030 protein-coding 72763 2810439L12Rik - - 4|4 RIKEN cDNA 2810439L12 gene protein-coding 100041411 Gm12225 - - 11|11 B1.3 predicted gene 12225 pseudo 100124296 Traj56 Gm16769 - 14|14 C2 T cell receptor alpha joining 56 other 102640147 XR_374750 Gm36282 - - 2 C3|2 predicted gene, 36282 ncRNA 22712 Mm.12916 NM_011760 ENSMUSG00000023882 Zfp54 2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83 - 17 A3.2|17 11.4 cM zinc finger protein 54 protein-coding 387344 Mm.377906 NM_199155 ENSMUSG00000062952 Tas2r110 T2R10|Tas2r10|mt2r57 - 6 G1|6 64.03 cM taste receptor, type 2, member 110 protein-coding 102632119 XR_383805 Gm16311 - - 15 A1|15 2.15 cM predicted gene 16311 ncRNA 100042497 Gm3871 - - 10 D1|10 predicted gene 3871 unknown 62105 D11Mit99 - - 11 62.99 cM DNA segment, Chr 11, Massachusetts Institute of Technology 99 unknown 108167937 XR_001780358 Gm46300 - - 11 E2|11 predicted gene, 46300 ncRNA 93709 Mm.247203 NM_033584 ENSMUSG00000103144 Pcdhga1 - - 18|18 B3 protocadherin gamma subfamily A, 1 protein-coding 100504455 Mm.26272 XR_865438 Gm15834 C130065N10Rik - 1|1 C1.3 predicted gene 15834 ncRNA 434378 7030419G21Rik - - 9|9 A3 RIKEN cDNA 7030419G21 gene protein-coding 18760 Mm.133719 NM_008858 ENSMUSG00000002688 Prkd1 PKD|PKD1|Pkcm|Prkcm - 12|12 B3 protein kinase D1 protein-coding 71132 Mm.179740 NM_027687 ENSMUSG00000024430 Cabyr 1700016C01Rik|4933421A18Rik|CBP86|FSP-2 - 18|18 A1 calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) protein-coding 94216 Mm.155586 NM_053185 ENSMUSG00000031273 Col4a6 BB116301 - X|X F1-F2 collagen, type IV, alpha 6 protein-coding 99814 AU022436 - - - expressed sequence AU022436 unknown 62193 D15Mit62 - - 15 29.03 cM DNA segment, Chr 15, Massachusetts Institute of Technology 62 unknown 116604 D7Tem1 - - - DNA segment, Chr 7, Tempel 1 unknown 403201 Mm.110162 NR_152140 5330416C01Rik Gm532 - 13|13 D1 RIKEN cDNA 5330416C01 gene ncRNA 85143 D6Mit250 - - 6 47.75 cM DNA segment, Chr 6, Massachusetts Institute of Technology 250 unknown 68567 Mm.45127 NM_026770 ENSMUSG00000029161 Cgref1 1110004G24Rik|AW045201|Cgr11 - 5|5 B1 cell growth regulator with EF hand domain 1 protein-coding 100040834 Mm.417690 Gm2990 - - 14 B|14 predicted gene 2990 unknown 96870 C77235 - - - expressed sequence C77235 unknown 100503248 Mm.403916 NR_037976 ENSMUSG00000085653 Gm15179 - - 1 C4|1 38.87 cM predicted gene 15179 ncRNA 30917 AI256787 - - - EST AI256787 unknown 76866 Mm.200590 NM_001081100 ENSMUSG00000029049 Morn1 2900057D20Rik|4930417P05Rik|AU042805 - 4|4 E2 MORN repeat containing 1 protein-coding 102637454 Gm34258 - - 16 B4|16 predicted gene, 34258 pseudo 100416882 Gm18300 - - 1|1 A2 cytochrome b5 reductase 4 pseudogene pseudo 21137 T(2;4)1Sn T1Sn - - reciprocal translocation, Chr 2 and 4, Snell 1 other 211535 Mm.227539 NM_001033243 ENSMUSG00000040189 Ccdc114 - - 7|7 B3 coiled-coil domain containing 114 protein-coding 723833 NR_029651 ENSMUSG00000098807 Mir300 Mirn300|mir-300|mmu-mir-300 - 12 F1|12 microRNA 300 ncRNA 100043092 Mm.367420 NR_046074 ENSMUSG00000110042 Gm4224 - - 7 A1|7 predicted gene 4224 ncRNA 20514 Mm.1056 NM_009201 ENSMUSG00000001918 Slc1a5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7 - 7|7 A2 solute carrier family 1 (neutral amino acid transporter), member 5 protein-coding 56784 Mm.292180 NM_019994 ENSMUSG00000021027 Ralgapa1 2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884 - 12|12 C1 Ral GTPase activating protein, alpha subunit 1 protein-coding 102632760 Gm30749 - - 14|14 predicted gene, 30749 ncRNA 100038725 Mm.441403 NM_001204983 ENSMUSG00000038594 Cep85l Gm9766 - 10 B3|10 centrosomal protein 85-like protein-coding 100035781 Hdlq30 - - - HDL QTL 30 unknown 102638929 XR_380297 Gm35372 - - 10 B2|10 predicted gene, 35372 ncRNA 66743 Mm.318331 NM_025739 ENSMUSG00000028677 Rnf220 4732477A13|4931406I20Rik|5730503K05Rik|AV302541 - 4|4 D1 ring finger protein 220 protein-coding 102634645 Gm32181 - - Y|Y predicted gene, 32181 ncRNA 105244221 XR_866511 Gm39868 - - 2 D|2 predicted gene, 39868 ncRNA 70488 5730405O12Rik - - 11|11 RIKEN cDNA 5730405O12 gene protein-coding 100628570 NR_039544 ENSMUSG00000093311 Mir3965 mmu-mir-3965|mu-mir-3965 - 5 G2|5 74.53 cM microRNA 3965 ncRNA 102636218 Mm.343364 NR_151444 ENSMUSG00000085634 Gm15290 - - 13 D2.2|13 63.3 cM predicted gene 15290 ncRNA 360050 D17Jcs70 - - - DNA segment, Chr 17, John C. Schimenti 70 unknown 110467519 LOC110467519 - - - Cyp1a1 5' regulatory region biological-region 102639121 Gm35509 - - 12|12 predicted gene, 35509 ncRNA 100046572 Gm14712 - - X|X A7.3 leucine rich repeat containing 58 pseudogene pseudo 100417530 Gm15975 - - 5|5 C1 PAP associated domain containing 4 pseudogene pseudo 111283 Psmb7-ps2 Sfc9 - X A1.1|X 3.66 cM proteasome (prosome, macropain) subunit, beta type 7, pseudogene 2 pseudo 26368 Mm.27096 NM_011927 ENSMUSG00000007209 Ceacam9 AA410097|AW545709|Cea-5|Cea5|mmCGM8 - 7 A2|7 9.15 cM carcinoembryonic antigen-related cell adhesion molecule 9 protein-coding 105244105 Gm39778 - - 2|2 predicted gene, 39778 ncRNA 77066 Mm.125475 5930409G06Rik - - 3|3 RIKEN cDNA 5930409G06 gene protein-coding 100034827 Hrq3 - - 1 45.53 cM heart rate QTL 3 unknown 100039656 Gm12918 - - 4|4 A1 ribosomal protein L13 pseudogene pseudo 66859 Mm.19325 NM_025807 ENSMUSG00000037762 Slc16a9 1200003C15Rik|4930425B13Rik|AI552636 - 10|10 B5.3 solute carrier family 16 (monocarboxylic acid transporters), member 9 protein-coding 23992 Mm.277250 NM_011871 ENSMUSG00000002731 Prkra AV120107|PRK|Pact|RAX|lear - 2|2 C3 protein kinase, interferon inducible double stranded RNA dependent activator protein-coding 94226 Mm.190619 NM_053190 ENSMUSG00000045087 S1pr5 Edg8|S1P5|lpB4 - 9|9 A3 sphingosine-1-phosphate receptor 5 protein-coding 68052 Mm.14798 NM_026533 ENSMUSG00000090862 Rps13 2700063M04Rik - 7|7 F1 ribosomal protein S13 protein-coding 434325 Mm.33613 NM_001100462 ENSMUSG00000043664 Tmem221 - - 8|8 B3.3 transmembrane protein 221 protein-coding 76859 4921518B13Rik - - 9|9 RIKEN cDNA 4921518B13 gene protein-coding 74507 5530400K19Rik - - 1|1 RIKEN cDNA 5530400K19 gene protein-coding 100039293 NM_001177539 ENSMUSG00000072672 Duxbl3 Gm10391 - 14 A3|14 double homeobox B-like 3 protein-coding 68539 Mm.251890 NM_134142 ENSMUSG00000034659 Tmem109 1110006I15Rik|AA958958|C77652 - 19|19 A transmembrane protein 109 protein-coding 360128 D17Brg152 - - - DNA segment, Chr 17, David E. Bergstrom 152 unknown 76707 Mm.138740 NM_029709 ENSMUSG00000064302 Clasp1 1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha - 1|1 E2.3 CLIP associating protein 1 protein-coding 62492 D10Mit135 - - 10 54.99 cM DNA segment, Chr 10, Massachusetts Institute of Technology 135 unknown 13384 Mm.20449 NM_007863 ENSMUSG00000052373 Mpp3 6430514B01|Dlgh3 - 11 D|11 65.48 cM membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) protein-coding 100036424 Tmevd9 - - 1 33.31 cM Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 9 unknown 230613 Mm.122553 NM_177668 ENSMUSG00000048766 Skint10 A030001H23Rik|Gm570 - 4|4 D1 selection and upkeep of intraepithelial T cells 10 protein-coding 110837 Usf1-rs2 - - - upstream transcription factor 1, related sequence 2 protein-coding 16188 Mm.425857 NM_008369 ENSMUSG00000068758 Il3ra CD123|CDw123|SUT-1 - 14 A1|14 7.08 cM interleukin 3 receptor, alpha chain protein-coding 69527 Mm.252982 NM_023514 ENSMUSG00000060679 Mrps9 2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637 - 1|1 B mitochondrial ribosomal protein S9 protein-coding 492979 Igf1sl1 - - 6 53.75 cM IGF-1 serum levels 1 unknown 27611 D0Hgu2 - - - DNA segment, Human Genetics Unit 2 unknown 83560 Mm.440758 NM_031386 ENSMUSG00000010342 Tex14 C85585 - 11|11 C testis expressed gene 14 protein-coding 19144 Mm.3944 NM_011177 ENSMUSG00000050063 Klk6 AI849898|BSP|Bssp|Klk29|MSP|Prss18|Prss9|neurosin - 7 B3|7 28.28 cM kallikrein related-peptidase 6 protein-coding 664919 Mm.427609 Gm7406 EG664919 - 9|9 A1 predicted gene 7406 unknown 102641825 XR_880073 Gm38577 - - 11 C|11 predicted gene, 38577 ncRNA 106298 Mm.288606 NM_001039521 ENSMUSG00000022682 Rrn3 AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a - 16|16 A1 RRN3 RNA polymerase I transcription factor homolog (yeast) protein-coding 18616 Mm.389800 NM_008817 ENSMUSG00000002265 Peg3 AL022617|ASF-1|End4|Gcap4|Pw1|Zfp102|mKIAA0287 - 7 A1|7 3.89 cM paternally expressed 3 protein-coding 52157 D10Ggc1e - - - DNA segment, Chr 10, G. Consalez 1, expressed unknown 77881 6030458E02Rik - - 19|19 RIKEN cDNA 6030458E02 gene protein-coding 100039914 Gm20821 - - Y|Y predicted gene, 20821 protein-coding 360069 D17Jcs86 - - - DNA segment, Chr 17, John C. Schimenti 86 unknown 13017 Mm.246240 NM_009980 ENSMUSG00000030970 Ctbp2 AA407280|D7Ertd45e|Gtrgeo6|Ribeye - 7 F3|7 76.32 cM C-terminal binding protein 2 protein-coding 112393 Eae44b Eae6|Eae6b - 11 32.13 cM experimental allergic encephalomyelitis susceptibility 44b unknown 105247037 XR_880810 Gm42218 - - X A2|X predicted gene, 42218 ncRNA 108168879 XR_001783918 Gm46811 - - 3 F1|3 predicted gene, 46811 ncRNA 236690 Mm.90233 NM_173415 ENSMUSG00000051228 Nyx CLNP|CSNB1|CSNB4|nob - X A1.1|X 8.37 cM nyctalopin protein-coding 66481 Mm.289669 NM_025587 ENSMUSG00000039001 Rps21 1810049N11Rik|2410030A14Rik - 2|2 H4 ribosomal protein S21 protein-coding 105782 Mm.25568 NM_134089 ENSMUSG00000022568 Scrib AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul - 15 D3|15 35.29 cM scribbled planar cell polarity protein-coding 108167392 XR_389929 LOC108167392 - - - uncharacterized LOC108167392 ncRNA 80291 Mm.425280 NM_030259 ENSMUSG00000029401 Rilpl2 - - 5|5 F Rab interacting lysosomal protein-like 2 protein-coding 102631741 XR_879339 Gm30005 - - 8 E2|8 predicted gene, 30005 ncRNA 194908 Mm.344651 NM_183139 ENSMUSG00000043648 Pld6 4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD - 11|11 B1.3 phospholipase D family, member 6 protein-coding 654362 Mm.466598 NM_001040461 Fbxw7as1 Dear|Dear1|Despr - 3|3 F1 F-box and WD-40 domain protein 7 antisense transcript 1 ncRNA 78924 Mm.296547 4930420G21Rik - - 16|16 C3.3 RIKEN cDNA 4930420G21 gene unknown 791350 Mm.394999 Gm9898 - - - predicted gene 9898 unknown 100862242 LOC100862242 - - 7 E3 40S ribosomal protein S2 pseudogene pseudo 102636393 Mm.134173 XR_387546 A930014E01Rik Gm37316 - 3|3 A1 RIKEN cDNA A930014E01 gene ncRNA 671917 XM_006535878 ENSMUSG00000094915 LOC671917 - - - component of Sp100-rs-like protein-coding 102633763 XR_381774 Gm31513 - - 12 D1|12 predicted gene, 31513 ncRNA 105243885 XR_872312 Gm39610 - - 11 A3.2|11 predicted gene, 39610 ncRNA 21415 Mm.440067 NM_009332 ENSMUSG00000055799 Tcf7l1 Tcf-3|Tcf3|bHLHb21 - 6 C1|6 32.27 cM transcription factor 7 like 1 (T cell specific, HMG box) protein-coding 110992 Top1-ps2 - - - topoisomerase (DNA) I pseudogene 2 pseudo 404374 Olfr289-ps1 GA_x5J8B7W66A6-1043662-1044210 - 3|3 A1 olfactory receptor 289, pseudogene 1 pseudo 102467530 n-TGgcc2 n-Tg10 - 8 E1|8 nuclear encoded tRNA glycine 2 (anticodon GCC) tRNA 102640412 XR_383602 Gm36477 - - 14 D3|14 predicted gene, 36477 ncRNA 102640658 XR_388278 Gm36672 - - 19 A|19 predicted gene, 36672 protein-coding 74564 Mm.398902 9130022E09 - - 6|6 uncharacterized 9130022E09 unknown 100125844 Tbqt3 - - - tibia bone quality traits 3 unknown 100035193 Zit1 - - 1 84.32 cM zinc induced tolerance 1 unknown 230233 Mm.282743 NM_026079 ENSMUSG00000028431 Ikbkap 3110040G09Rik|6030413P05|C78473|Elp1|IKAP - 4 B3|4 31.66 cM inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein protein-coding 228775 Mm.276018 NM_144554 ENSMUSG00000032715 Trib3 Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3 - 2 G3|2 74.83 cM tribbles pseudokinase 3 protein-coding 19777 Mm.387220 NM_011274 ENSMUSG00000030421 Uri1 C80913|NNX3|Rmp - 7|7 B3 URI1, prefoldin-like chaperone protein-coding 100035842 Tgyl1 - - - triglyceride level 1 unknown 545490 Mm.484023 NM_001242943 ENSMUSG00000078879 Zfp973 6230416C02Rik|Gm14306|Gm14436 - 2|2 H4 zinc finger protein 973 protein-coding 105244311 Gm39945 - - 2|2 predicted gene, 39945 ncRNA 100417222 Gm18461 - - 7|7 A3 crumbs homolog 1 pseudogene pseudo 72075 Mm.250418 NM_031373 ENSMUSG00000049401 Ogfr 2010013E17Rik - 2|2 H4 opioid growth factor receptor protein-coding 258791 Mm.337275 NM_146795 ENSMUSG00000049052 Olfr812 MOR110-1 - 10|10 D3 olfactory receptor 812 protein-coding 627833 Gm6794 EG627833 - 6|6 C1 predicted gene 6794 pseudo 14104 Mm.236443 NM_007988 ENSMUSG00000025153 Fasn A630082H08Rik|FAS - 11 E2|11 84.56 cM fatty acid synthase protein-coding 102631535 Gm29848 - - 6 C1|6 predicted gene, 29848 pseudo 100416155 Gm17944 - - 9|9 E3.1 thymidine kinase 1 pseudogene pseudo 13681 Mm.26680 NM_144958 ENSMUSG00000059796 Eif4a1 BM-010|Ddx2a|Eif4 - 11 B3|11 42.86 cM eukaryotic translation initiation factor 4A1 protein-coding 102634680 XR_375009 Gm14210 - - 2 F3|2 66.89 cM predicted gene 14210 ncRNA 110074 Mm.282499 NM_023595 ENSMUSG00000027203 Dut 5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase - 2 F1|2 61.33 cM deoxyuridine triphosphatase protein-coding 620390 Gm6147 EG620390 - 12|12 B3 high mobility group protein 1 pseudogene pseudo 110899 Lrp-rs - - - low density lipoprotein receptor-related protein, related sequence protein-coding 74388 Mm.202749 NM_028906 ENSMUSG00000032393 Dpp8 2310004I03Rik|4932434F09Rik|AI666706|DPP VIII - 9|9 C dipeptidylpeptidase 8 protein-coding 493146 Mnotch - - 1 81.08 cM modifier of Notch unknown 20589 Mm.3179 NM_009212 ENSMUSG00000024831 Ighmbp2 AEP|Catf1|RIPE3b1|Smbp-2|Smbp2|Smubp2|nmd|sma - 19 A|19 3.03 cM immunoglobulin mu binding protein 2 protein-coding 258832 Mm.377712 NM_146835 ENSMUSG00000029184 Olfr109 MOR250-1 - 17|17 B1 olfactory receptor 109 protein-coding 791423 Mm.483498 NR_033549 ENSMUSG00000055045 Gm11190 - - 11 B5|11 predicted gene 11190 ncRNA 100504286 Gm20150 - - 15 D1|15 25.43 cM predicted gene, 20150 pseudo 105244382 XR_867044 Gm40001 - - 2 H3|2 predicted gene, 40001 ncRNA 102633368 XR_375766 Gm31210 - - 3 F1|3 predicted gene, 31210 ncRNA 493006 Orgwq3 - - 2 60.69 cM organ weight QTL 3 unknown 14275 Mm.2135 NM_008034 ENSMUSG00000001827 Folr1 FBP1|Folbp-1|Folbp1 - 7|7 E2 folate receptor 1 (adult) protein-coding 18457 Mm.268921 NM_019788 ENSMUSG00000005804 Bloc1s6 BLOC-1|Pldn|Stx13bp1|pa - 2 E5|2 60.66 cM biogenesis of lysosomal organelles complex-1, subunit 6, pallidin protein-coding 111519 Igl Igl-x - 16 A3|16 immunoglobulin lambda chain complex protein-coding 404736 Iglc4 EG404736|Gm5410|Igl-C4 - 16|16 A3 immunoglobulin lambda constant 4 pseudo 75766 Mm.159563 NM_029422 ENSMUSG00000022303 Dcstamp 4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP - 15|15 B3.1 dendrocyte expressed seven transmembrane protein protein-coding 404242 Mm.354955 NM_207540 ENSMUSG00000070552 Mrgprx1 MrgC11|Mrgprc11 - 7|7 B4 MAS-related GPR, member X1 protein-coding 100041690 Gm12288 - - 11|11 B3 protease (prosome, macropain) 26S subunit, ATPase 1 pseudogene pseudo 432725 Gm5445 EG432725 - 13|13 A1 predicted gene 5445 pseudo 62650 D14Mit164 - - 14 50.9 cM DNA segment, Chr 14, Massachusetts Institute of Technology 164 unknown 105242583 XR_868745 Gm38755 - - 5 G3|5 predicted gene, 38755 ncRNA 665247 Gm7554 EG665247 - 6|6 B1 predicted gene 7554 pseudo 100039176 Mm.261790 NR_046065 ENSMUSG00000087283 Gm13580 - - 2|2 C1.1 predicted gene 13580 ncRNA 668323 Gm12297 - - 11|11 B3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 28137 D9Mgc46e EL1 - 9 54.57 cM DNA segment, Chr 9, MRC UK Mouse Genome Centre 46 expressed unknown 100503743 XR_105549 Gm19866 - - 13 B2|13 31.88 cM predicted gene, 19866 ncRNA 21378 Mm.417272 NR_027799 Tbrg3 TB-11 - 15|15 E1 transforming growth factor beta regulated gene 3 ncRNA 104009 Mm.27035 NM_023268 ENSMUSG00000033684 Qsox1 1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo - 1|1 G3 quiescin Q6 sulfhydryl oxidase 1 protein-coding 71254 Mm.102341 NM_194335 ENSMUSG00000039164 Naif1 2310007O20Rik|4933440H19Rik - 2|2 B nuclear apoptosis inducing factor 1 protein-coding 13461 Dp(17)1 - - - duplication, Chr 17 other 105243134 XR_870169 Gm39137 - - 8 A1.3|8 predicted gene, 39137 ncRNA 107045 Mm.312170 NM_134137 ENSMUSG00000024493 Lars 2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352 - 18|18 B3 leucyl-tRNA synthetase protein-coding 384261 Mm.396194 Gm5296 - - 5 C3.1|5 predicted gene 5296 unknown 668792 Gm9364 EG668792 - 3|3 G1 predicted gene 9364 pseudo 68740 Mm.69020 NM_001191018 ENSMUSG00000095992 Krtap22-2 1110032D16Rik - 16|16 C3.3 keratin associated protein 22-2 protein-coding 57816 Mm.273285 NM_021344 ENSMUSG00000029359 Tesc 1010001A17Rik|2410011K10Rik|TE-1 - 5 F|5 57.84 cM tescalcin protein-coding 75025 Mm.159401 NR_045356 ENSMUSG00000112484 4930473O22Rik - - 10|10 C3 RIKEN cDNA 4930473O22 gene ncRNA 69361 Mm.46095 NM_173367 ENSMUSG00000048573 Cypt3 1700006H02Rik|Ckt1r1 - X|X F3 cysteine-rich perinuclear theca 3 protein-coding 105246117 XR_876093 Gm41458 - - 16 B5|16 predicted gene, 41458 ncRNA 56600 291h24Sp6 - - - DNA segment, 291h24Sp6 unknown 399631 D130009B15Rik - - - RIKEN cDNA D130009B15 gene protein-coding 114154 Taste2 - - - taste-saccharin preference 2 unknown 211673 Mm.229141 NM_001102430 ENSMUSG00000067851 Arfgef1 ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200 - 1|1 A2 ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) protein-coding 28282 D10Jhu72 - - 10 38.55 cM DNA segment, Chr 10, Johns Hopkins University 72 unknown 100043476 Gm4463 - - 14|14 E2.3 family with sequence similarity 33, member A pseudogene pseudo 16669 Mm.439699 NM_008471 ENSMUSG00000020911 Krt19 AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19 - 11 D|11 63.42 cM keratin 19 protein-coding 66092 Mm.182912 NM_078478 ENSMUSG00000041028 Ghitm 1010001P14Rik|C77840|MICS1|PTD010|Tmbim5 - 14 B|14 21.29 cM growth hormone inducible transmembrane protein protein-coding 102638975 XR_375727 Gm35407 - - 3 E1|3 predicted gene, 35407 ncRNA 100534371 LOC100534371 - - X|X D fibronectin type III domain containing 3C1 pseudogene pseudo 667880 Gm8857 EG667880 - 5|5 A1 predicted gene 8857 pseudo 108168541 XM_017318728 LOC108168541 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 22371 Mm.22339 NM_011708 ENSMUSG00000001930 Vwf 6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD - 6 F3|6 59.32 cM Von Willebrand factor protein-coding 102640502 XR_391406 Gm36546 Gm44819 - 7 B3|7 predicted gene, 36546 ncRNA 100034781 Kcal3 - - - kilocalorie 3 unknown 100416675 Gm18185 - - 1|1 E1.1 survival motor neuron 1 pseudogene pseudo 100504135 Mm.288015 Gm20081 - - 14 D1|14 33.34 cM predicted gene, 20081 ncRNA 102635448 XR_377905 Gm32783 - - 6 D3|6 predicted gene, 32783 ncRNA 100042959 Gm4130 - - 13 C3|13 heterogeneous nuclear ribonucleoprotein K pseudogene pseudo 102634148 XR_382873 Gm31803 - - 13 D2.1|13 predicted gene, 31803 ncRNA 102638484 XR_391115 Gm35037 Gm44160 - 7 A1|7 predicted gene, 35037 ncRNA 27470 29T - - - DNA segment, 29T unknown 109279984 LOC109279984 Mm713 - - VISTA enhancer mm713 biological-region 235682 Mm.326477 NM_173364 ENSMUSG00000047036 Zfp445 AW610627|ZNF168|Znf445|mszf29|mszf50 - 9|9 F4 zinc finger protein 445 protein-coding 109845 Ly29 Ly-29 - - lymphocyte antigen 29 protein-coding 224139 Mm.244815 NM_030035 ENSMUSG00000034243 Golgb1 4930428L02Rik|628101|6330407A06Rik|AU042952|C130074L01Rik|F730017E11Rik|Gm6840|mKIAA4151 - 16|16 B3 golgi autoantigen, golgin subfamily b, macrogolgin 1 protein-coding 111000 Capza1-ps1 Cappa1-ps1 - - capping protein (actin filament) muscle Z-line, alpha 1, pseudogene 1 pseudo 109730 Lyr - - - lymphoma resistance unknown 359858 DXMgc82 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 82 unknown 72989 2900074G08Rik - - 10|10 RIKEN cDNA 2900074G08 gene protein-coding 100042319 Gm3788 - - 3 F1|3 thymosin, beta 10 pseudogene pseudo 207932 Mm.328688 NM_029497 ENSMUSG00000039929 Urb1 4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539 - 16|16 C3.3 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) protein-coding 320492 Mm.52021 NM_177173 ENSMUSG00000057715 A830018L16Rik - - 1|1 A2 RIKEN cDNA A830018L16 gene protein-coding 61153 D13Mit1000 D10Mit82 - 13 25.47 cM DNA segment, Chr 13, Massachusetts Institute of Technology 1000 unknown 625048 Gm6546 EG625048 - 3|3 E1 ribosomal protein L7A pseudogene pseudo 106088 BB060269 - - - expressed sequence BB060269 unknown 105242603 Gm38771 - - 6|6 predicted gene, 38771 ncRNA 105245031 XR_870985 Gm40542 - - 9 E3.1|9 predicted gene, 40542 ncRNA 109416 Bwfq1 - - - body weight and fat QTL 1 unknown 233445 Mm.389930 NM_001105184 ENSMUSG00000091205 Vmn2r71 EG233445 - 7|7 D3 vomeronasal 2, receptor 71 protein-coding 53171 MHAa77c12 - - - DNA segment, YAC MHAa77c12 unknown 105243295 XR_879216 Gm39257 - - 8 E1|8 predicted gene, 39257 ncRNA 270106 Mm.319719 NM_016738 ENSMUSG00000000740 Rpl13 A52|L13 - 8|8 E1 ribosomal protein L13 protein-coding 102467495 n-TCgca20 n-Tc20 - 6 B2.3|6 nuclear encoded tRNA cysteine 20 (anticodon GCA) tRNA 108167455 XR_001778252 Gm44781 - - 7 E3|7 predicted gene 44781 ncRNA 71430 5430416B10Rik - - 2|2 RIKEN cDNA 5430416B10 gene protein-coding 83433 Mm.261623 NM_031254 ENSMUSG00000023992 Trem2 TREM-2|Trem2a|Trem2b|Trem2c - 17|17 C triggering receptor expressed on myeloid cells 2 protein-coding 628664 Mm.429832 NM_001270494 ENSMUSG00000094682 Gm6902 EG628664 - 7|7 A3 predicted gene 6902 protein-coding 627371 Gm6749 EG627371 - 6|6 E2 predicted pseudogene 6749 protein-coding 59030 Mm.272570 NM_021527 ENSMUSG00000027274 Mkks 1300013E18Rik|AI463362|AI957237|Bbs6 - 2|2 F3 McKusick-Kaufman syndrome protein-coding 102632494 XR_387802 Gm30552 - - 8 C1-C2|8 predicted gene, 30552 ncRNA 72590 Mm.177502 NM_028292 ENSMUSG00000030718 Ppme1 1110069N17Rik|2700017M01Rik|PME-1|Pme1 - 7|7 E2 protein phosphatase methylesterase 1 protein-coding 59015 Mm.24532 NM_021512 ENSMUSG00000051329 Nup160 160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197 - 2|2 E1 nucleoporin 160 protein-coding 53666 D7Mc2 D7McC2 - - DNA segment, Chr 7, McClelland 2 unknown 108169114 Gm46940 - - 5 F|5 60S ribosomal protein L19 pseudogene pseudo 269633 Mm.392539 NM_026621 ENSMUSG00000055235 Wdr86 2810046M22Rik|BC059069 - 5|5 A3 WD repeat domain 86 protein-coding 330164 Mm.193276 NM_177875 ENSMUSG00000052848 C130026L21Rik - - 5|5 F RIKEN cDNA C130026L21 gene ncRNA 72787 Mm.28478 NM_028355 ENSMUSG00000028614 Ndc1 2810475A17Rik|AI450313|Tmem48|sks - 4|4 C7 NDC1 transmembrane nucleoporin protein-coding 105242639 XR_869010 Gm38798 - - 6 B2.1|6 predicted gene, 38798 ncRNA 75538 Mm.258841 NM_028169 ENSMUSG00000051113 Fam71e1 0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5 - 7|7 B3 family with sequence similarity 71, member E1 protein-coding 69352 Mm.389031 NM_178617 ENSMUSG00000040536 Necab1 1700003H21Rik|Efcbp1|STIP-1 - 4|4 A2 N-terminal EF-hand calcium binding protein 1 protein-coding 105244791 Gm40341 - - 5|5 predicted gene, 40341 ncRNA 73531 Mm.396245 NR_040527 ENSMUSG00000107637 1700069P05Rik - - 6|6 F1 RIKEN cDNA 1700069P05 gene ncRNA 105610 AU024086 - - - expressed sequence AU024086 unknown 111832 Iapls2-23 - - - intracisternal A particle, lymphocyte specific 2-23 other 100417286 Gm18504 - - 12|12 D3 crumbs homolog 1 pseudogene pseudo 50765 Mm.21757 NM_015799 ENSMUSG00000029716 Tfr2 Trfr2 - 5|5 G2 transferrin receptor 2 protein-coding 667927 Gm8881 EG667927 - 16|16 C1.1 pyruvate kinase, muscle pseudogene pseudo 56525 Mm.295595 NM_019941 ENSMUSG00000047603 Zfp235 0610030O19Rik|AI428448 - 7|7 A3 zinc finger protein 235 protein-coding 111625 Xmv50 Xmv-50 - - xenotropic murine leukemia virus 50 other 116760 Drb7 - - - dopamine receptor binding 7 unknown 105243957 XR_865539 Gm29185 - - 1 C3|1 predicted gene 29185 ncRNA 100036333 Cfmq2 - - 9 17.8 cM cystic fibrosis modifier QTL 2 unknown 108188 Rpl7-ps3 - - - ribosomal protein L7, pseudogene 3 pseudo 631595 Ighv1-21-1 EG631595|Gm7070 - 12|12 F2 immunoglobulin heavy variable 1-21-1 pseudo 621487 XM_001480998 Frg2f9 Gm6232 - 14 E2.3|14 FSHD region gene 2 family member 9 protein-coding 791260 Mm.475469 NM_001081679 ENSMUSG00000078630 Tomt Comt2|F930017I19Rik - 7 E2|7 transmembrane O-methyltransferase protein-coding 667049 Gm12539 - - 4|4 B3 predicted gene 12539 pseudo 94068 Ms10n MMS10-N - 14|14 minisatellite 10n detected by probe MMS10 other 105245551 Gm40995 - - 13|13 predicted gene, 40995 ncRNA 100856803 Gm8265 666740 - 14|14 2.86 cM predicted gene 8265 protein-coding 102632849 XR_875959 Gm30814 - - 16 B1|16 predicted gene, 30814 ncRNA 97708 C78568 - - - expressed sequence C78568 unknown 320011 Mm.261022 NM_198899 ENSMUSG00000037470 Uggt1 0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1 - 1|1 B UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 21201 T(5;11)57H T57H - - reciprocal translocation, Chr 5 and 11, Harwell 57 other 105244670 Gm40236 - - 4|4 predicted gene, 40236 ncRNA 74555 9130401L11Rik - - 6|6 RIKEN cDNA 9130401L11 gene protein-coding 668110 Mm.390078 NM_029139 ENSMUSG00000033409 Syce1l 4930481F22Rik|MMRP|PSESS|mmrp2 - 8|8 E1 synaptonemal complex central element protein 1 like protein-coding 665733 Eif5al3-ps EG665733|Eif5al3 - 5|5 E1 eukaryotic translation initiation factor 5A-like 3, pseudogene pseudo 51931 D1Ertd799e - - 1 15.46 cM DNA segment, Chr 1, ERATO Doi 799, expressed unknown 110596868 LOC110596868 - - - Cyp7a1 promoter biological-region 100418047 Gm18966 - - 6|6 A3.1 cell division cycle 20 homolog pseudogene pseudo 381175 Mm.266831 NM_201362 ENSMUSG00000038903 Ccdc68 BC046343 - 18|18 E2 coiled-coil domain containing 68 protein-coding 68255 Mm.389784 NM_023440 ENSMUSG00000045282 Tmem86b C330014O21Rik - 7|7 A1 transmembrane protein 86B protein-coding 100093675 Trnak-cuu - - - transfer RNA lysine (anticodon CUU) tRNA 107982 Amh-rs5 - - - anti-Mullerian hormone, related sequence 5 protein-coding 384741 Gm5342 EG384741 - 7|7 C glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 98112 C78330 AU019959 - - expressed sequence C78330 protein-coding 102634074 XR_869076 Gm31746 - - 6 B3|6 predicted gene, 31746 ncRNA 26422 Mm.384353 NM_030595 ENSMUSG00000027799 Nbea Lyst2|mKIAA1544 - 3 C|3 26.61 cM neurobeachin protein-coding 100040893 Gm3028 - - 9|9 A3 stromal membrane-associated protein 1 pseudogene pseudo 17228 Mm.1252 NM_010780 ENSMUSG00000022225 Cma1 MMCP-5|Mcp-5|Mcp5|Mcpt5 - 14 C3|14 28.19 cM chymase 1, mast cell protein-coding 102635223 XR_378024 Gm32616 - - 6 F2|6 predicted gene, 32616 ncRNA 107926 Gdcr2 Gdcr-2 - - glycerolphosphate dehydrogenase regulator 2 protein-coding 207142 Bbaa14 Bb14 - - B.burgdorferi-associated arthritis 14 unknown 106736463 LOC106736463 - - - C4a androgen-responsive enhancer biological-region 27931 D0Ffm6 8G3 - - DNA segment, Universitat Frankfurt, Frankfurt/Main 6 unknown 105246358 XR_877152 Gm41657 - - 18 A1|18 predicted gene, 41657 ncRNA 105247024 Gm42206 - - 3|3 predicted gene, 42206 ncRNA 244233 Mm.19283 NM_172909 ENSMUSG00000025461 Cd163l1 B430307C05|E430002D04Rik|Scart1 - 7|7 F4 CD163 molecule-like 1 protein-coding 102640341 XR_001778244 Gm36430 - - 7 E3|7 predicted gene, 36430 ncRNA 21754 Mm.485441 NM_011571 ENSMUSG00000028458 Tesk1 AI326901 - 4|4 A5 testis specific protein kinase 1 protein-coding 100043549 Gm4512 - - 17|17 E1.1 zinc finger, BED domain containing 4 pseudogene pseudo 16415 Mm.12872 NM_008405 ENSMUSG00000000157 Itgb2l 5033406G21Rik|pactolus - 16|16 C4 integrin beta 2-like protein-coding 102637015 XR_381681 Gm33929 - - 12 C3|12 predicted gene, 33929 ncRNA 100048701 Mm.428544 NR_045264 ENSMUSG00000084826 AI847159 - - 2|2 F1 expressed sequence AI847159 ncRNA 108168087 XR_001780956 Gm46418 - - 13 B1|13 predicted gene, 46418 ncRNA 668911 Gm14053 - - 2|2 F3 ribosomal protein L21 pseudogene pseudo 100126776 Mm.471588 NM_001256050 ENSMUSG00000095625 Esp24 Gm21947 - 17 B1|17 exocrine gland secreted peptide 24 protein-coding 108168782 XR_001783433 Gm21985 - - 2 E3|2 predicted gene 21985 ncRNA 69423 Mm.46121 NM_027076 1700019M22Rik - - 12|12 E NFX-like protein pseudo 108802 Mm.318248 NM_001033226 ENSMUSG00000028558 Calr4 4933403L16Rik|AU017583 - 4|4 C7 calreticulin 4 protein-coding 23959 Mm.244235 NM_011851 ENSMUSG00000032420 Nt5e 2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT - 9|9 E3.1 5' nucleotidase, ecto protein-coding 107481 Tgct1 - - 19|19 testicular germ cell tumor 1 protein-coding 100503582 Mm.329508 NR_040461 Gm19784 - - 18 E1|18 39.77 cM predicted gene, 19784 ncRNA 328263 Mm.123405 NR_046142 ENSMUSG00000114531 A530065N20Rik A530065N20 - 13|13 B2 RIKEN cDNA A530046M15 gene ncRNA 26932 Mm.259626 NM_012024 ENSMUSG00000021051 Ppp2r5e 4633401M22Rik|AI449017|B56beta - 12|12 C3 protein phosphatase 2, regulatory subunit B', epsilon protein-coding 433230 Nsa2-ps1 EG433230|Gm19415|Gm5515 - 19|19 B NSA2 ribosome biogenesis homolog, pseudogene 1 pseudo 239667 Mm.243658 NM_172819 ENSMUSG00000023026 Dip2b 4932422C22|AI317237|AI854602|mKIAA1463 - 15|15 F1 disco interacting protein 2 homolog B protein-coding 230872 Mm.80685 NM_172122 ENSMUSG00000040860 Crocc - - 4|4 D3 ciliary rootlet coiled-coil, rootletin protein-coding 257985 Mm.422962 NM_001011797 ENSMUSG00000095075 Olfr782 MOR110-8 - 10|10 D3 olfactory receptor 782 protein-coding 18331 Mm.246535 NM_010980 ENSMUSG00000075066 Olfr32 MOR227-7P|MOR227-9_p|MTPCR05 - 2|2 E1 olfactory receptor 32 protein-coding 62065 D10Mit35a D10Mit35 - 10 70.36 cM DNA segment, Chr 10, Massachusetts Institute of Technology 35a unknown 53707 D12Nyu4 D12-4 - - DNA segment, Chr 12, NYU 4 unknown 13629 Mm.2903 NM_007907 ENSMUSG00000034994 Eef2 Ef-2 - 10|10 C1 eukaryotic translation elongation factor 2 protein-coding 236914 Gm371 - - X|X C3 germ cell-less homolog 1 pseudogene pseudo 71875 2300010F08Rik 9430087B15Rik - 4|4 RIKEN cDNA 2300010F08 gene protein-coding 100861915 Gm21937 - - 12 D2|12 predicted gene, 21937 pseudo 258653 Mm.377616 NM_146659 ENSMUSG00000075151 Olfr1136 MOR177-3 - 2|2 D olfactory receptor 1136 protein-coding 692114 Igkv13-57-1 gz33r - 6|6 C1 immunoglobulin kappa chain variable 13-57-1 pseudo 60822 D4Mit67 - - 4 70.02 cM DNA segment, Chr 4, Massachusetts Institute of Technology 67 unknown 73932 4930406M16Rik - - 17|17 RIKEN cDNA 4930406M16 gene protein-coding 723829 NR_029657 ENSMUSG00000065456 Mir106a Mirn106a|mir-106a - X A5|X microRNA 106a ncRNA 244654 Mm.490385 NM_198625 ENSMUSG00000033763 Mtss1l ABBA - 8|8 E1 metastasis suppressor 1-like protein-coding 56492 Mm.386784 NM_019815 ENSMUSG00000032473 Cldn18 - - 9|9 E3.3 claudin 18 protein-coding 68693 Mm.476519 NM_001081196 ENSMUSG00000071659 Hnrnpul2 1110031M08Rik|AI465155|Hnrpul2 - 19|19 A heterogeneous nuclear ribonucleoprotein U-like 2 protein-coding 328918 Mm.261685 NM_001080810 Zscan30 C230097I24Rik|Gm754|Zfp397os - 18|18 A2 zinc finger and SCAN domain containing 30 protein-coding 14345 Mm.63450 NM_010242 ENSMUSG00000049307 Fut4 AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1 - 9 A2|9 4.3 cM fucosyltransferase 4 protein-coding 109268 9430090L19Rik - - 1|1 RIKEN cDNA 9430090L19 gene protein-coding 228684 Mm.486585 NM_001033296 ENSMUSG00000074764 Sel1l2 Gm118 - 2|2 F3 sel-1 suppressor of lin-12-like 2 (C. elegans) protein-coding 11987 Mm.275489 NM_007513 ENSMUSG00000041313 Slc7a1 4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1 - 5 G3|5 88.48 cM solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 protein-coding 18030 Mm.136604 NM_017373 ENSMUSG00000056749 Nfil3 AV225605|E4BP4 - 13 B1|13 27.68 cM nuclear factor, interleukin 3, regulated protein-coding 380823 Ighv1-64 Gm16865|VNP - 12|12 F2 immunoglobulin heavy variable 1-64 other 75662 Mm.396205 XR_375132 ENSMUSG00000087148 1700030C14Rik - - 2|2 H1 RIKEN cDNA 1700030C14 gene ncRNA 70894 Mm.87320 NM_001081046 ENSMUSG00000020690 Efcab3 4921510J17Rik - 11|11 E1 EF-hand calcium binding domain 3 protein-coding 626985 Gm6726 EG626985 - 17|17 B1 predicted gene 6726 pseudo 100504291 Mm.393534 Gm16618 - - 16|16 12.46 cM predicted gene, 16618 unknown 217122 Mm.24063 NM_183153 Gm11545 A430060F13Rik|C86086 - 11|11 D predicted gene 11545 protein-coding 67583 Mm.444284 NR_015596 ENSMUSG00000087223 4930442L01Rik - - 3|3 F2.1 RIKEN cDNA 4930442L01 gene ncRNA 100035542 Sbmd2 - - 2 21.81 cM spinal bone mineral density 2 unknown 105244076 Gm39754 - - 2|2 predicted gene, 39754 protein-coding 105242816 XR_869582 Gm38925 - - 6 G3|6 predicted gene, 38925 ncRNA 77706 Mm.261496 NM_029961 ENSMUSG00000072791 Abcb5 9230106F14Rik - 12|12 F2 ATP-binding cassette, sub-family B (MDR/TAP), member 5 protein-coding 102634844 Mm.288703 NR_151618 Gm16582 - - 1 C4|1 38.54 cM predicted gene 16582 ncRNA 108167339 XM_017314880 LOC108167339 - - 11 A1 uncharacterized LOC108167339 protein-coding 61480 D7Mit141 - - 7 88.95 cM DNA segment, Chr 7, Massachusetts Institute of Technology 141 unknown 22059 Mm.222 NM_011640 ENSMUSG00000059552 Trp53 Tp53|bbl|bfy|bhy|p44|p53 - 11 B3|11 42.83 cM transformation related protein 53 protein-coding 381979 Mm.297064 NM_001003920 ENSMUSG00000035390 Brsk1 Gm1100|SAD-B|SADB - 7|7 A1 BR serine/threonine kinase 1 protein-coding 77994 Mm.394688 NR_015543 ENSMUSG00000090386 Mir99ahg 2810055G20Rik|D730043B02Rik - 16|16 C3.1 Mir99a and Mirlet7c-1 host gene (non-protein coding) ncRNA 66957 Mm.12638 NM_025867 ENSMUSG00000026327 Serpinb11 2310046M08Rik|AU015399 - 1|1 E2.1 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11 protein-coding 110159 Gct4 Sot - - granulosa cell tumorigenesis 4 unknown 61096 D1Mit486 - - 1 44.64 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 486 unknown 666311 Mm.260773 NM_001081431 ENSMUSG00000070420 Zscan25 EG666311|Zfp498 - 5|5 G2 zinc finger and SCAN domain containing 25 protein-coding 27367 Mm.290771 NM_013762 ENSMUSG00000060036 Rpl3 F2|J1 - 15|15 E1 ribosomal protein L3 protein-coding 15959 Mm.426079 NM_010501 ENSMUSG00000074896 Ifit3 Ifi49|P49 - 19|19 C1 interferon-induced protein with tetratricopeptide repeats 3 protein-coding 101056014 NM_133243 AY036118 Erf1 - 17|17 B1 cDNA sequence AY036118 ncRNA 18508 Mm.3608 NM_013627 ENSMUSG00000027168 Pax6 1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey - 2 E3|2 55.31 cM paired box 6 protein-coding 18285 Mm.252830 NM_008757 ENSMUSG00000061923 Odf1 - - 15 B3.1|15 15.14 cM outer dense fiber of sperm tails 1 protein-coding 320929 Mm.183114 4732460I02Rik - - X|X RIKEN cDNA 4732460I02 gene protein-coding 102466215 NR_105984 ENSMUSG00000099202 Mir7017 Gm27945|mmu-mir-7017 - 4|4 D2.3 microRNA 7017 ncRNA 433182 Mm.70666 NM_001025388 ENSMUSG00000059040 Eno1b EG433182|Eno1|Gm5506 - 18 C|18 enolase 1B, retrotransposed protein-coding 61396 D5Mit148 - - 5 17.33 cM DNA segment, Chr 5, Massachusetts Institute of Technology 148 unknown 100040722 NM_001282034 ENSMUSG00000095934 Btbd35f13 Gm2927 - X A3.2|X BTB domain containing 35, family member 13 protein-coding 105247209 XR_881575 Gm13165 - - 4 E1|4 78.38 cM predicted gene 13165 ncRNA 108167441 XR_001778189 Gm44968 - - 7 D3|7 predicted gene 44968 ncRNA 54614 Mm.358668 NM_018786 ENSMUSG00000023007 Prpf40b 2610317D23Rik|Hypc - 15|15 F1 pre-mRNA processing factor 40B protein-coding 404506 Olfr1379-ps1 MOR129-5_p - 11|11 B1.3 olfactory receptor 1379, pseudogene 1 pseudo 100316711 NR_035490 ENSMUSG00000089139 Mir1964 mir-1964|mmu-mir-1964 - 7 B1|7 17.26 cM microRNA 1964 ncRNA 320080 Mm.27258 NM_198035 ENSMUSG00000044617 Zbtb39 7030401O21Rik|mKIAA0352 - 10|10 D3 zinc finger and BTB domain containing 39 protein-coding 626943 NM_001085540 ENSMUSG00000078509 Pramef17 Gm13107 - 4|4 E1 PRAME family member 17 protein-coding 100417458 Gm18620 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 101056408 Mm.475778 NM_001282148 Gm15816 - - 8 A2|8 11.42 cM predicted gene 15816 protein-coding 75983 5033423K11Rik - - 5|5 RIKEN cDNA 5033423K11 gene protein-coding 105244000 Gm39695 - - 1|1 predicted gene, 39695 ncRNA 664890 XR_035653 ENSMUSG00000095494 Gm7391 EG664890 - X A3.1|X predicted pseudogene 7391 unknown 102633553 LOC102633553 - - 17 C thioredoxin-like protein 4A pseudogene pseudo 552911 LOC552911 - - - uncharacterized LOC552911 unknown 102465202 NR_105805 ENSMUSG00000105738 Mir6384 mmu-mir-6384 - X|X A5 microRNA 6384 ncRNA 100502902 Gm19443 - - 18|18 53.32 cM predicted gene, 19443 ncRNA 257949 Olfr634-ps1 MOR12-4 - 7|7 E3 olfactory receptor 634, pseudogene 1 pseudo 215890 Mm.94461 NM_175448 ENSMUSG00000019785 Clvs2 A330019N05Rik|Rlbp1l2 - 10|10 A4-B1 clavesin 2 protein-coding 27584 D5Buc14 441I19.T7 - 5 37.56 cM DNA segment, Chr 5, Bucan 14 unknown 100041678 Mm.443041 NM_001256886 ENSMUSG00000096003 Gm3500 100041758|Gm3401 - 14 A1|14 predicted gene 3500 protein-coding 22696 Mm.5011 NM_009554 ENSMUSG00000028389 Zfp37 Tzn|Zfp-37 - 4 B3|4 33.04 cM zinc finger protein 37 protein-coding 383613 Gm5265 EG383613 - 1|1 H2.3 predicted pseudogene 5265 pseudo 61939 D5Mit378 - - 5 85.17 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 378 unknown 100039377 NM_001102678 ENSMUSG00000095887 Gm10096 Xmr-like - X A3.1|X predicted gene 10096 protein-coding 21473 Mm.364342 Tcra Tcralpha - 14 C2|14 T cell receptor alpha chain protein-coding 71077 4933423N12Rik - - 15|15 RIKEN cDNA 4933423N12 gene protein-coding 105245072 XR_873001 Gm40574 - - 12 F1|12 predicted gene, 40574 ncRNA 66473 Mm.34374 NM_025583 ENSMUSG00000031957 Ctrb1 2200008D09Rik|AI504462|Ctrb|Prt-2 - 8 E1|8 57.98 cM chymotrypsinogen B1 protein-coding 404554 AL024386 - - - expressed sequence AL024386 unknown 100048969 Gofm4 - - - gonadal fat mass 4 unknown 387151 NR_029547 ENSMUSG00000065399 Mir133a-1 Mirn133|Mirn133a-1|mir-133a-1 - 18|18 A1 microRNA 133a-1 ncRNA 100126821 Gm17794 - - 10|10 A3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 243846 Mm.482401 NM_172297 ENSMUSG00000041375 Ccdc9 2600011L02Rik - 7|7 A2 coiled-coil domain containing 9 protein-coding 252909 Mm.377268 NM_145847 ENSMUSG00000070817 Vmn1r85 V1rj3 - 7|7 A1 vomeronasal 1 receptor 85 protein-coding 80794 Mm.81698 NM_023224 ENSMUSG00000040525 Cblc 2310076I21Rik|2310079L19Rik|Cbl3 - 7|7 A3 Casitas B-lineage lymphoma c protein-coding 58222 Mm.143789 NM_021411 ENSMUSG00000020732 Rab37 B230331O03Rik|B230354I04Rik - 11|11 E2 RAB37, member RAS oncogene family protein-coding 58861 Mm.287166 NM_021476 ENSMUSG00000052821 Cysltr1 BB147369|CysLT1R|Cyslt1 - X|X D cysteinyl leukotriene receptor 1 protein-coding 668236 Gm9059 EG668236 - X|X C3 predicted gene 9059 unknown 668894 Mm.393119 XM_001004454 ENSMUSG00000079051 Gm14025 - - 2|2 F1 predicted gene 14025 protein-coding 629915 Mm.422810 Ighv1-47 Gm16966 - 12|12 F2 immunoglobulin heavy variable 1-47 other 102638429 Gm12613 - - 11 B2|11 37.81 cM predicted gene 12613 pseudo 100035504 Tcq1 - - - total cholesterol QTL 1 unknown 62487 D10Mit117 - - 10 43.66 cM DNA segment, Chr 10, Massachusetts Institute of Technology 117 unknown 192285 Mm.330408 NM_138755 ENSMUSG00000058318 Phf21a 80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1 - 2|2 E1 PHD finger protein 21A protein-coding 74435 Mm.195711 NM_028938 ENSMUSG00000028182 Lrriq3 4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44 - 3|3 H4 leucine-rich repeats and IQ motif containing 3 protein-coding 100036495 Idd26 - - 1 6.27 cM insulin dependent diabetes susceptibility 26 unknown 102631904 XR_380479 Gm30121 - - 10 B4|10 predicted gene, 30121 ncRNA 668253 Mm.32886 NR_028264 ENSMUSG00000097589 Dleu2 1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2 - 14 D1|14 33.16 cM deleted in lymphocytic leukemia, 2 ncRNA 67574 Mm.249084 NM_026247 ENSMUSG00000041718 Alg13 2810046O15Rik|4833435D08Rik|Glt28d1|MDS031 - X|X F2 asparagine-linked glycosylation 13 protein-coding 100861640 XM_003688971 ENSMUSG00000094945 Rhox4a2 Gm21098 - X A3.3|X reproductive homeobox 4A2 protein-coding 259090 Olfr562-ps1 MOR14-5 - 7|7 E3 olfactory receptor 562, pseudogene 1 pseudo 102635974 Gm11625 - - 11 D|11 65.15 cM predicted gene 11625 pseudo 100418121 Gm19014 - - 14|14 A3 eukaryotic translation elongation factor 1 gamma pseudogene pseudo 100862426 LOC100862426 - - - zinc finger and SCAN domain containing protein 4D-like pseudo 73793 4930405G09Rik - - 7|7 RIKEN cDNA 4930405G09 gene protein-coding 70307 2510042H03Rik - - 16|16 RIKEN cDNA 2510042H03 gene protein-coding 545743 Gm5864 EG545743 - 5|5 B1 PDZ and LIM domain protein 1 pseudogene pseudo 102641308 Gm38547 - - 9|9 predicted gene, 38547 ncRNA 670912 Mm.10628 Gm9510 - - 16 C4|16 predicted gene 9510 unknown 232227 Mm.196943 NM_182784 ENSMUSG00000034312 Iqsec1 AW561907|BC026481|BRAG2|D6Ertd349e|cI-43 - 6 D1|6 40.16 cM IQ motif and Sec7 domain 1 protein-coding 100048885 Mm.422695 NM_001134644 Gm2083 - - 4|4 B3 major urinary protein LOC100048885 protein-coding 360112 D17Jcs113 - - - DNA segment, Chr 17, John C. Schimenti 113 unknown 111216 Oat-rs2 Oatrs2 - - ornithine aminotransferase related sequence 2 pseudo 100042446 Vmn1r-ps65 Gm3850 - 7|7 A1 vomeronasal 1 receptor, pseudogene 65 pseudo 72482 Mm.288249 NM_026683 ENSMUSG00000033701 Acbd6 0610010G04Rik|2610100E10Rik - 1|1 G3 acyl-Coenzyme A binding domain containing 6 protein-coding 102637694 Gm29659 - - Y|Y predicted gene 29659 pseudo 70885 Mm.252421 NM_027590 ENSMUSG00000031864 Ints10 4921521J11Rik|AI462004 - 8|8 B3.3 integrator complex subunit 10 protein-coding 385550 Mm.469435 XR_106321 ENSMUSG00000096819 Srsy - - Y|Y A1 serine-rich, secreted, Y-linked protein-coding 62367 D1Mit543 - - - DNA Segment, Chr 1, Massachusetts Institute of Technology 543 unknown 102639917 XR_385040 Gm36116 - - 16 C3.3|16 predicted gene, 36116 ncRNA 108167593 Gm46077 - - 1 B|1 40S ribosomal protein S28 pseudogene pseudo 320707 Mm.210095 NM_177236 ENSMUSG00000031376 Atp2b3 6430519O13Rik|Pmca3 - X|X A7.3 ATPase, Ca++ transporting, plasma membrane 3 protein-coding 102636079 Mm.421381 NR_155348 ENSMUSG00000115142 Gm33251 - - 15 B3.1|15 predicted gene, 33251 ncRNA 16113 Mm.333124 Igk-V24 IGKV2-f - - immunoglobulin kappa chain variable 24 (V24) other 105358867 Mm.192128 LOC105358867 - - - uncharacterized LOC105358867 ncRNA 100124681 Mm.304135 Trbv17 Gm16779|Tcrb-V9 - 6 19.25 cM|6 B1 T cell receptor beta, variable 17 other 100041685 Gm15220 - - 14|14 C1 predicted gene 15220 pseudo 62771 D16Mit159 - - 16 3.39 cM DNA segment, Chr 16, Massachusetts Institute of Technology 159 unknown 619322 NM_001033816 F830104G03Rik - - 3|3 D RIKEN cDNA F830104G03 gene unknown 625424 Mm.389677 NM_001039228 ENSMUSG00000051503 Gm6583 EG625424 - 5 F|5 predicted gene 6583 protein-coding 216821 Mm.28063 NM_173453 ENSMUSG00000043284 Tmem11 5730466P16Rik|AA409091 - 11|11 B2 transmembrane protein 11 protein-coding 100043099 Mm.129543 Gm4230 - - 18 D3|18 predicted gene 4230 unknown 100043312 Hmgb1-ps5 Gm15447|Hmg-E - 3 F2.1|3 high mobility group box 1, pseudogene 5 pseudo 353310 Mm.212469 NM_001101502 ENSMUSG00000085795 Zfp703 1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1 - 8|8 A2 zinc finger protein 703 protein-coding 100035058 W3q2 - - - weight 3 weeks QTL 2 unknown 105246058 Mm.145886 XR_875859 Gm41409 - - 16 A1|16 predicted gene, 41409 ncRNA 61078 D1Mit296 - - 1 2.08 cM DNA segment, Chr 1, Massachusetts Institute of Technology 296 unknown 71974 Mm.33202 NM_133740 ENSMUSG00000030505 Prmt3 2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3 - 7|7 B4 protein arginine N-methyltransferase 3 protein-coding 102639351 XR_389684 Gm15952 - - 3 B|3 17.41 cM predicted gene 15952 ncRNA 116537 Modm - - - modifier of methylation unknown 100035890 Crhtaq3 - - 13 30.11 cM Crh transcript abundance QTL 3 unknown 102640908 XR_386656 Gm36860 - - 19 C1|19 predicted gene, 36860 ncRNA 105245128 XR_871567 Gm40622 - - 10 A4|10 predicted gene, 40622 ncRNA 100040053 Gm2574 - - 3 H1|3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100043180 XM_006527715 ENSMUSG00000101818 Gm28269 Gm4281 - X A2|X predicted gene 28269 protein-coding 664726 Mm.437189 NM_001039944 Cypt10 - - - cysteine-rich perinuclear theca 10 protein-coding 109604 Es12 Es-12 - - esterase 12 protein-coding 621628 Mm.469914 NM_001101560 ENSMUSG00000091530 Cldn20 EG621628 - 17|17 A1 claudin 20 protein-coding 108167853 XR_001780120 Gm46254 - - 11 B5|11 predicted gene, 46254 ncRNA 105246585 XR_001782646 Gm41856 - - 19 C3|19 predicted gene, 41856 ncRNA 22354 Mm.282007 NM_011703 ENSMUSG00000032528 Vipr1 AV071699|VIP-R1|VPAC1 - 9 F4|9 72.5 cM vasoactive intestinal peptide receptor 1 protein-coding 100579150 Gm17618 - - 13 44.4 cM predicted gene, 17618 protein-coding 78467 Mm.416872 XR_874489 ENSMUSG00000115723 1700087M22Rik - - 14|14 B RIKEN cDNA 1700087M22 gene ncRNA 76098 5830462P14Rik - - 14|14 RIKEN cDNA 5830462P14 gene protein-coding 68675 Mm.343005 NM_138312 ENSMUSG00000064138 Fam172a 1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87 - 13|13 C1 family with sequence similarity 172, member A protein-coding 258741 Mm.223174 NM_146746 ENSMUSG00000059595 Olfr935 MOR171-11 - 9|9 A5.1 olfactory receptor 935 protein-coding 102631791 Gm11465 - - 2|2 86.09 cM predicted gene 11465 ncRNA 69253 Mm.1980 NM_024441 ENSMUSG00000038086 Hspb2 27kDa|2810021G24Rik|HSP27|MKBP - 9 A5.3|9 27.75 cM heat shock protein 2 protein-coding 68222 Mm.227260 NM_026624 ENSMUSG00000026969 Fam166a 4931415M17 - 2|2 A3 family with sequence similarity 166, member A protein-coding 102639761 XR_875072 Gm35996 - - 15 B1|15 predicted gene, 35996 ncRNA 73925 Mm.72430 4930404O17Rik - - 14|14 RIKEN cDNA 4930404O17 gene protein-coding 100039370 Gm2189 - - 6|6 B1 predicted gene 2189 pseudo 777684 Ighv2-1 Gm17347 - 12|12 F1 immunoglobulin heavy variable 2-1 pseudo 258681 Mm.271522 NM_146686 ENSMUSG00000060049 Olfr235 MOR214-3|Olfr232|Olfr232-ps1|Olfr235-ps1|Olfr245|Olfr245-ps1 - 19|19 A olfactory receptor 235 protein-coding 71208 Mm.159465 NM_172408 ENSMUSG00000045928 4933440M02Rik - - 7|7 F3 RIKEN cDNA 4933440M02 gene ncRNA 110481 Tcra-V5.1 - - - T cell receptor alpha, variable 5.1 other 60752 D2Mit32 - - 2 17.18 cM DNA segment, Chr 2, Massachusetts Institute of Technology 32 unknown 403183 Mm.336176 NM_207281 ENSMUSG00000046828 Mettl21e 4832428D23Rik|Gm991 - 1|1 C1.1 methyltransferase like 21E protein-coding 326619 Mm.228709 NM_178192 ENSMUSG00000060093 Hist1h4a - - 13|13 A3.1 histone cluster 1, H4a protein-coding 14923 Mm.3624 NM_008193 ENSMUSG00000020444 Guk1 AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1 - 11|11 B1.3 guanylate kinase 1 protein-coding 102632853 XR_385449 Gm30818 - - 17 A3.3|17 predicted gene, 30818 ncRNA 665178 Gm7529 EG665178 - 9|9 A1 CD2-associated protein pseudogene pseudo 110462 Tcra-VBMA - - - T cell receptor alpha, variable BMA other 105244219 XR_866507 Gm39867 - - 2 C3|2 predicted gene, 39867 ncRNA 107539 Lap2 Lap-2 - - leucine aminopeptidase 2, serum protein-coding 100417183 Gm14976 - - X|X E3 karyopherin (importin) beta 1 pseudogene pseudo 102467499 n-TCgca31 n-Tc31 - 6 B2.3|6 nuclear encoded tRNA cysteine 31 (anticodon GCA) tRNA 404424 Olfr762-ps1 - - 17|17 B1 olfactory receptor 762, pseudogene 1 pseudo 100034968 Tgct3 - - - testicular germ cell tumor 3 unknown 23863 Mm.304252 NM_201227 ENSMUSG00000053226 Dand5 Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco - 8|8 C2 DAN domain family member 5, BMP antagonist protein-coding 620228 Gm6137 EG620228 - Y|Y A1 ras homolog gene family, member A pseudogene pseudo 102637285 XR_386894 Gm34138 - - X A1.1|X predicted gene, 34138 ncRNA 269854 Mm.42652 NM_201355 ENSMUSG00000035285 Nat14 BC047219 - 7|7 A1 N-acetyltransferase 14 protein-coding 100042591 Mm.469891 NM_001105062 ENSMUSG00000096373 Vmn2r31 - - 7|7 A1 vomeronasal 2, receptor 31 protein-coding 18754 Mm.24614 NM_011104 ENSMUSG00000045038 Prkce 5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156 - 17|17 E4 protein kinase C, epsilon protein-coding 70941 Mm.158501 NM_027612 ENSMUSG00000028520 4921539E11Rik - - 4|4 C6 RIKEN cDNA 4921539E11 gene protein-coding 171188 Mm.222748 NM_134170 ENSMUSG00000062905 Vmn1r32 V1rc15 - 6|6 C1 vomeronasal 1 receptor 32 protein-coding 54367 Mm.248876 NM_018759 ENSMUSG00000029290 Zfp326 5730470H14Rik|ZAN75|Znf326 - 5|5 E5 zinc finger protein 326 protein-coding 61080 D2Mit425 - - 2 2.65 cM DNA Segment, Chr 2, Massachusetts Institute of Technology 425 unknown 102637043 Gm33952 - - 3|3 predicted gene, 33952 pseudo 100534343 Gm21034 - - 7|7 B4 predicted gene, 21034 pseudo 102636623 Gm33634 - - 6|6 predicted gene, 33634 ncRNA 27924 D16Ium41 - - 16 49.78 cM DNA segment, Chr 16, Indiana University Medical 41 unknown 241128 Mm.145511 NM_173425 ENSMUSG00000043230 Fam124b A830043J08Rik - 1|1 C5 family with sequence similarity 124, member B protein-coding 105245410 Gm40871 - - 12|12 predicted gene, 40871 ncRNA 13340 Mm.4930 NM_007854 ENSMUSG00000024891 Slc29a2 Der12|Ent2|Hnp36 - 19|19 A solute carrier family 29 (nucleoside transporters), member 2 protein-coding 75054 4930511P09Rik - - 18|18 RIKEN cDNA 4930511P09 gene protein-coding 80879 Mm.28632 NM_030696 ENSMUSG00000025161 Slc16a3 Mct3|Mct4 - 11|11 E2 solute carrier family 16 (monocarboxylic acid transporters), member 3 protein-coding 109280019 LOC109280019 Mm152 - - VISTA enhancer mm152 biological-region 268480 Mm.340766 NM_001080925 ENSMUSG00000038020 Rapgefl1 B230105J10 - 11|11 D Rap guanine nucleotide exchange factor (GEF)-like 1 protein-coding 102633432 XR_379583 Gm31262 - - 9 C|9 predicted gene, 31262 ncRNA 73496 Mm.243730 1700072G22Rik - - 1|1 RIKEN cDNA 1700072G22 gene protein-coding 109540 Re Den|Ri|denuded|riccioli - - rex unknown 19226 Mm.284168 NM_020623 ENSMUSG00000059077 Pth Pthp - 7 F1|7 59.19 cM parathyroid hormone protein-coding 74107 Mm.9916 NM_028293 ENSMUSG00000024989 Cep55 1200008O12Rik|2700032M20Rik - 19|19 C2 centrosomal protein 55 protein-coding 791088 Mm.483016 Tmem147os C630016N16Rik - 7 B1|7 transmembrane protein 147, opposite strand unknown 97548 C81615 - - - expressed sequence C81615 protein-coding 631331 Gm7061 EG631331 - X|X C3 proteasome subunit beta type-1-like pseudo 100040961 XR_871563 Gm10145 - - 10|10 A4 predicted gene 10145 pseudo 93933 D16Jhu73 638E9.SP6 - - DNA segment, Chr 16, Johns Hopkins University 73 unknown 22780 Mm.133367 NM_011771 ENSMUSG00000018168 Ikzf3 5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3 - 11|11 D IKAROS family zinc finger 3 protein-coding 20365 Mm.286177 NM_011353 ENSMUSG00000021643 Serf1 4F5|Msmac1|m4F5 - 13 D1|13 52.98 cM small EDRK-rich factor 1 protein-coding 108168601 XM_017318807 LOC108168601 - - Y D Y-linked testis-specific protein 1-like protein-coding 100035044 Phdlc1 - - - plasma HDL cholesterol 1 unknown 257872 Mm.377280 NM_001012266 ENSMUSG00000045204 Olfr835 MOR150-3 - 9|9 A2 olfactory receptor 835 protein-coding 634825 Mm.429748 NM_001177482 ENSMUSG00000061958 Gm14851 CRS1C-2 - 8 A2|8 predicted gene 14851 protein-coding 622335 Gm6314 EG622335 - 7|7 F4 predicted pseudogene 6314 pseudo 111725 Mpmv44 Mpmv-44 - - modified polytropic murine leukemia virus 44 other 75964 Mm.273769 NM_029491 ENSMUSG00000033382 Trappc8 5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012 - 18|18 A2 trafficking protein particle complex 8 protein-coding 667371 Gm8596 EG667371 - 1|1 E4 ribosomal protein L7A pseudogene pseudo 100418383 Gm19173 - - 6|6 B2.3 amiloride binding protein 1 (amine oxidase, copper-containing) pseudogene pseudo 105243243 XR_879047 Gm39216 - - 8 C3|8 predicted gene, 39216 ncRNA 100035956 Fatpad5 - - - fat pad 5 unknown 67148 Mm.241472 NM_025997 ENSMUSG00000038646 Fam103a1 2410047I02Rik|2610204K14Rik|RAM - 7|7 D3 family with sequence similarity 103, member A1 protein-coding 100035959 Ntta3 - - - neurotensin transcript abundance 3 unknown 102640142 XR_385850 Gm36279 - - 17 E4|17 predicted gene, 36279 ncRNA 80976 Mm.33490 NM_030725 ENSMUSG00000027220 Syt13 5730409J20Rik|AI549909|mKIAA1427 - 2|2 E1 synaptotagmin XIII protein-coding 102638167 XR_875436 Gm38506 - - 15 D3|15 predicted gene, 38506 ncRNA 75120 4930509E22Rik - - 8|8 RIKEN cDNA 4930509E22 gene protein-coding 102466887 NR_106196 ENSMUSG00000099145 Mir8116 Gm27485|mmu-mir-8116 - 5|5 G2 microRNA 8116 ncRNA 667466 Gm15454 EG667466 - 1|1 E4 predicted gene 15454 protein-coding 102631591 Gm29889 - - X C3|X predicted gene, 29889 pseudo 14415 Mm.272120 NM_008077 ENSMUSG00000070880 Gad1 EP10|Gad-1 - 2 C2|2 41.63 cM glutamate decarboxylase 1 protein-coding 52790 D11Wsu197e - - - DNA segment, Chr 11, Wayne State University 197, expressed unknown 108168757 XR_001783305 Gm46742 - - 2 C1.1|2 predicted gene, 46742 ncRNA 668591 Ighv1-81 Gm16711 - 12|12 F2 immunoglobulin heavy variable 1-81 other 100126203 Mm.217172 NR_152214 6820426E19Rik Gm43983 - 6 F1|6 RIKEN cDNA 6820426E19 gene ncRNA 102637079 XR_380715 Gm33981 - - 10 C3|10 predicted gene, 33981 ncRNA 665571 Vmn2r-ps45 EG665571 - 7|7 A1 vomeronasal 2, receptor, pseudogene 45 pseudo 102634340 Mm.489050 XR_377030 Usp46os1 1700094C10Rik - 5|5 C3.3 ubiquitin specific peptidase 46, opposite strand 1 ncRNA 23961 Mm.233471 NM_001083925 ENSMUSG00000029605 Oas1b Flv|L1|Mmu-L1|Oas1|Oias-2|Oias2|Wnv - 5 F|5 60.64 cM 2'-5' oligoadenylate synthetase 1B protein-coding 213541 Mm.23998 NM_145393 ENSMUSG00000040025 Ythdf2 9430020E02Rik|HGRG8|NY-REN-2 - 4|4 D2.3 YTH domain family 2 protein-coding 100417944 Gm18912 - - 6|6 G1 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene pseudo 93888 Mm.87553 NM_053142 ENSMUSG00000046387 Pcdhb17 Pcdhb16|PcdhbQ|mKIAA1621 - 18|18 B3 protocadherin beta 17 protein-coding 26943 Mm.218473 NM_012032 ENSMUSG00000017707 Serinc3 AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1 - 2|2 H3 serine incorporator 3 protein-coding 252864 Mm.330671 NM_145744 ENSMUSG00000042662 Dusp15 AI851682|LMW-DSP10|T-DSP10 - 2|2 H1 dual specificity phosphatase-like 15 protein-coding 258562 Mm.223091 NM_146569 ENSMUSG00000059379 Olfr1014 MOR213-5 - 2|2 D olfactory receptor 1014 protein-coding 71466 8430415D16Rik - - 3|3 RIKEN cDNA 8430415D16 gene protein-coding 105245217 Gm40701 - - 10|10 predicted gene, 40701 ncRNA 621155 Gm6204 EG621155 - 3|3 C ribosomal protein S14 pseudogene pseudo 100417037 Gm18377 - - 9|9 A4 transmembrane protein 126B pseudogene pseudo 21100 T(16C3-4;17A2)65Dn T(16;17)65Dn|T65Dn|Ts65Dn - - reciprocal translocation, Chr 16, cytogenetic band C3-4; and Chr 17, cytogenetic band A2, Davisson 65 other 102632865 XR_376240 Gm30827 - - 3 H3|3 predicted gene, 30827 ncRNA 105245090 XR_873067 Gm40588 - - 12 F1|12 predicted gene, 40588 ncRNA 109346 Mm.247537 NM_026241 ENSMUSG00000079610 Ankrd39 9130416N05Rik|C030004B10Rik - 1|1 B ankyrin repeat domain 39 protein-coding 16651 Mm.49689 NM_010656 ENSMUSG00000030255 Sspn Krag - 6 G3|6 77.7 cM sarcospan protein-coding 105247140 XR_881343 Gm11210 - - 4 B3|4 33.25 cM predicted gene 11210 ncRNA 546810 Gm5981 EG546810|Ppia-ps3_2252.1 - 3|3 G1 eptidyl-prolyl cis-trans isomerase A pseudogene 3_2252.1 pseudo 108167547 XR_001778642 Gm46049 - - 8 D3|8 predicted gene, 46049 ncRNA 102465188 NR_105783 ENSMUSG00000098675 Mir6364 Gm27327|mmu-mir-6364 - 16|16 A1 microRNA 6364 ncRNA 241296 Mm.389232 NM_177725 ENSMUSG00000007476 Lrrc8a Lrrc8|mKIAA1437 - 2|2 B leucine rich repeat containing 8A protein-coding 214308 NM_001111144 Gm381 - - X|X E3 high density lipoprotein (HDL) binding protein pseudogene pseudo 67996 Mm.24042 NM_026499 ENSMUSG00000016921 Srsf6 1210001E11Rik|AI314910|AW146126|Sfrs6 - 2 H2|2 83.87 cM serine/arginine-rich splicing factor 6 protein-coding 105242616 XR_868929 Gm38781 - - 6 A3.3|6 predicted gene, 38781 ncRNA 244672 Mm.245482 NM_027545 ENSMUSG00000025898 Cwf19l2 3230401L03Rik|9030209E10 - 9|9 A1 CWF19-like 2, cell cycle control (S. pombe) protein-coding 23971 Mm.244912 NM_011863 ENSMUSG00000028032 Papss1 AI325286|Asapk|SK1 - 3 G3|3 61.05 cM 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 13207 Mm.491096 NM_007840 ENSMUSG00000020719 Ddx5 2600009A06Rik|G17P1|HUMP68|Hlr1|p68 - 11 E1|11 70.01 cM DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 protein-coding 105247186 Gm42328 - - 4|4 predicted gene, 42328 protein-coding 208079 Mm.131226 NM_177329 ENSMUSG00000046764 A530053G22Rik - - 6|6 B3 RIKEN cDNA A530053G22 gene ncRNA 67652 Mm.55848 NM_026293 ENSMUSG00000028264 Spaca1 1700124L11Rik|4930540L03Rik - 4|4 A5 sperm acrosome associated 1 protein-coding 109403 Etohc3 - - 9 28.62 cM ethanol consumption 3 unknown 666724 Gm12475 - - 4|4 B2 polymerase (DNA-directed), delta 3, accessory subunit pseudogene pseudo 12817 Mm.300931 NM_007731 ENSMUSG00000058806 Col13a1 - - 10 32.29 cM|10 B4 collagen, type XIII, alpha 1 protein-coding 75291 Mm.23423 NM_133759 ENSMUSG00000071661 Zbtb3 4930563M09Rik - 19|19 A zinc finger and BTB domain containing 3 protein-coding 77209 Mm.125693 XR_868998 8030453O22Rik - - 6|6 B1 RIKEN cDNA 8030453O22 gene unknown 99132 Mm.384304 AI956758 - - - expressed sequence AI956758 protein-coding 100416667 Gm18178 - - Y|Y A1 zinc finger protein 449 pseudogene pseudo 74385 Mm.379235 NM_144535 ENSMUSG00000036291 Ap5m1 4932432K03Rik|Mu5|Mudeng - 14|14 C1 adaptor-related protein complex 5, mu 1 subunit protein-coding 74587 4833422B07Rik - - 18|18 RIKEN cDNA 4833422B07 gene protein-coding 233222 Mm.240142 NM_153067 ENSMUSG00000078698 Mrgpra3 Mrga3 - 7|7 B3 MAS-related GPR, member A3 protein-coding 100035152 Bntq9 - - - bone traits QTL 9 unknown 100124287 Traj61 Gm17363 - 14|14 C2 T cell receptor alpha joining 61 pseudo 102633789 XR_379586 Gm31530 - - 9 D|9 predicted gene, 31530 ncRNA 13528 Mm.286202 NM_007886 ENSMUSG00000071454 Dtnb - - 12 A1.1|12 1.88 cM dystrobrevin, beta protein-coding 102636753 XR_392233 ENSMUSG00000099836 Gm29204 - - Y C2|Y predicted gene 29204 ncRNA 18416 Mm.2611 NM_008769 ENSMUSG00000031173 Otc AI265390|Sf|spf - X A1.1|X 4.66 cM ornithine transcarbamylase protein-coding 100503388 Mm.482880 NM_001205034 ENSMUSG00000096380 Gm19668 - - 10 C1|10 39.72 cM predicted gene, 19668 protein-coding 69634 Mm.34608 NM_029556 ENSMUSG00000025545 Clybl 0610033J05Rik|2310014M14Rik|AI256068|Clb - 14|14 E5 citrate lyase beta like protein-coding 319346 C230069I12Rik - - 11|11 RIKEN cDNA C230069I12 gene protein-coding 435753 Gm5711 EG435753|Ppia-ps3_1234.1 - 3|3 G1 peptidylprolyl isomerase A pseudogene 3_1234.1 pseudo 105243287 XR_879192 Gm39250 - - 8 E1|8 predicted gene, 39250 ncRNA 114280 Manh13 QTL-SH10.1 - - mandible shape 13 unknown 100039495 Mm.121014 NR_045598 ENSMUSG00000086013 Gm15706 - - 6 G3|6 predicted gene 15706 ncRNA 102637224 Gm34093 - - 15|15 predicted gene, 34093 ncRNA 102638902 XR_391403 Gm35353 - - 7 B3|7 predicted gene, 35353 ncRNA 101055892 LOC101055892 - - X F1 cell division cycle protein 20 homolog pseudogene pseudo 20211 Mm.3489 NM_011316 ENSMUSG00000040017 Saa4 Saa-4|Saa-5 - 7 B3|7 30.53 cM serum amyloid A 4 protein-coding 102633947 XR_877207 Gm31646 - - 18 A2|18 predicted gene, 31646 ncRNA 258982 Mm.377776 NM_146980 ENSMUSG00000075061 Olfr1272 MOR227-3 - 2|2 E1 olfactory receptor 1272 protein-coding 105243001 Gm39051 - - 7|7 predicted gene, 39051 ncRNA 238836 Gm4938 EG238836|H3mm14 - 13|13 D1 H3 histone, family 3 pseudogene pseudo 85196 D18Mit167 - - 18 4.59 cM DNA segment, Chr 18, Massachusetts Institute of Technology 167 unknown 69587 Mm.261218 NM_172716 ENSMUSG00000033623 Pcgf3 2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3 - 5|5 F polycomb group ring finger 3 protein-coding 270076 Mm.2475 NM_008097 ENSMUSG00000003809 Gcdh 9030411L18|AI266902|D17825|GCD - 8 C3|8 41.28 cM glutaryl-Coenzyme A dehydrogenase protein-coding 100035403 Mpcp4 - - - myeloid progenitor cell proliferation 4 unknown 14163 Mm.8142 NM_008001 ENSMUSG00000025265 Fgd1 ZFYVE3 - X F3|X 68.46 cM FYVE, RhoGEF and PH domain containing 1 protein-coding 14560 Mm.432071 NM_145741 ENSMUSG00000021943 Gdf10 Bmp3b - 14 B|14 20.8 cM growth differentiation factor 10 protein-coding 100046034 Gm14279 - - 2|2 predicted gene 14279 protein-coding 102634678 Mm.177058 NR_110445 Haglr 6720416L17Rik|Hoxd-as1|Mdgt - 2|2 C3 Hoxd antisense growth associated long non-coding RNA ncRNA 668778 Gm9353 EG668778 - 3|3 G1 within bgcn homolog pseudogene pseudo 16229 In(10)17Rk-d In(10)17Rk|In17Rk - - inversion, Chr 10, Roderick 17, distal other 226601 Mm.475593 NM_001164306 ENSMUSG00000086056 Gm4846 EG226601|Fmo13 - 1|1 H2.3 predicted gene 4846 protein-coding 665485 Vmn2r-ps38 EG665485 - 7|7 A1 vomeronasal 2, receptor, pseudogene 38 pseudo 59046 Mm.247837 NM_021548 ENSMUSG00000007656 Arpp19 19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12 - 9|9 D cAMP-regulated phosphoprotein 19 protein-coding 111455 Rnr15 - - - ribosomal RNA, Chr 15 cluster other 667358 Vmn1r-ps76 EG667358|Gm8592 - 7|7 A3 vomeronasal 1 receptor, pseudogene 76 pseudo 108168579 XM_017318783 ENSMUSG00000094660 LOC108168579 - - Y E Y-linked testis-specific protein 1-like protein-coding 414361 Gm5418 EG414361 - 7|7 A2 vitamin K epoxide reductase complex, subunit 1-like 1 pseudogene 2 pseudo 111646 Ms15 MMS15 - - minisatellites detected by probe MMS15 other 66423 Mm.29063 NM_025556 ENSMUSG00000031458 Coprs 1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5 - 8|8 A1.1 coordinator of PRMT5, differentiation stimulator protein-coding 404212 Pisrt1 - - - polled intersex syndrome regulated transcript 1 protein-coding 100313943 Mm.46547 NR_031758 ENSMUSG00000093355 Snora26 MBI-6 - 5 C3.3|5 39.38 cM small nucleolar RNA, H/ACA box 26 snoRNA 102639371 XR_376465 Gm35701 - - 4 C6|4 predicted gene, 35701 ncRNA 20422 Mm.2469 NM_009169 ENSMUSG00000042541 Sem1 DSS1|Shfdg1|Shfg|Shfm1 - 6|6 A1 SEM1, 26S proteasome complex subunit protein-coding 387518 Tas2r145-ps3 Tas2r45|mps3|ps3 - 6|6 G1 taste receptor, type 2, member 145, pseudogene 3 pseudo 111872 Iap3rb1 - - - intracisternal A-type particle, U3 region, SINE repeat b-1 other 52558 Mm.290407 D10Ertd284e - - 10 58.68 cM DNA segment, Chr 10, ERATO Doi 284, expressed unknown 61144 D9Mit351 - - 9 73.03 cM DNA Segment, Chr 9 Massachusetts Institute of Technology 351 unknown 105245383 XM_017315298 Gm40848 - - 12 A1.2|12 predicted gene, 40848 protein-coding 112081 Alcw2 - - - alcohol withdrawal 2 unknown 492936 Bslm4 - - 1 81.08 cM basal locomotor activity 4 unknown 12267 Mm.2408 NM_009779 ENSMUSG00000040552 C3ar1 AZ3B|C3AR|HNFAG09 - 6|6 F2 complement component 3a receptor 1 protein-coding 76964 Mm.472489 NM_029816 ENSMUSG00000009114 2610028H24Rik ORF67 - 10|10 C1 RIKEN cDNA 2610028H24 gene protein-coding 11778 Mm.220173 NM_009682 ENSMUSG00000063801 Ap3s2 [s]3B - 7|7 D2 adaptor-related protein complex 3, sigma 2 subunit protein-coding 100417628 Gm14739 - - X|X C1 actin, alpha 2, smooth muscle, aorta pseudogene pseudo 102632068 Mm.147104 Gm30239 - - 13|13 predicted gene, 30239 ncRNA 26447 Mm.244352 NM_011972 ENSMUSG00000038425 Poli Rad30b - 18 44.48 cM|18 E2 polymerase (DNA directed), iota protein-coding 100034839 Tauph - - 16 48.89 cM tau phosphorylation unknown 73708 Mm.27982 NM_139218 ENSMUSG00000046323 Dppa3 2410075G02Rik|PCG7|PGC7|Stella - 6|6 F1 developmental pluripotency-associated 3 protein-coding 102634437 Ywhaq-ps3 Gm11226 - 4 C2|4 35.92 cM tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 3 pseudo 100035942 Ath38 - - - atherosclerosis 38 unknown 100035148 Bntq2 - - - bone traits QTL 2 unknown 100503960 Gm19989 - - - transcriptional adapter 2-beta-like pseudo 108167990 LOC108167990 - - 12 A1.3 zinc finger protein 120-like pseudo 258418 Mm.377489 NM_146426 ENSMUSG00000095910 Olfr469 MOR204-21 - 7|7 E3 olfactory receptor 469 protein-coding 28050 D16Ium19e D16Ium19 - - DNA segment, Chr 16, Indiana University Medical 19, expressed unknown 16593 Mm.278357 NM_008450 ENSMUSG00000021288 Klc1 AI874768|Kns2 - 12 F1|12 61.13 cM kinesin light chain 1 protein-coding 102466883 NR_106176 ENSMUSG00000065420 Mir142b Gm27750|mmu-mir-142b - 11|11 C microRNA 142b ncRNA 102639519 XR_001783599 Gm35815 - - 2 H4|2 predicted gene, 35815 ncRNA 56304 Ce9 - - 6|6 C1 immunoglobulin light chain variable region other 320811 Mm.211654 9430034N14Rik - - 1|1 RIKEN cDNA 9430034N14 gene protein-coding 780802 Ighv4-1 Gm16612 - 12|12 F1 immunoglobulin heavy variable 4-1 other 102636221 XR_388684 Gm33350 - - 11 B1.3|11 predicted gene, 33350 ncRNA 225523 Mm.193678 NM_178686 ENSMUSG00000048799 Cep120 A230075C01|AU016693|Ccdc100 - 18|18 D1 centrosomal protein 120 protein-coding 97008 C80918 - - - expressed sequence C80918 unknown 57890 Mm.131781 NM_145826 ENSMUSG00000043088 Il17re AA589509|IL-17RE|Il25r - 6|6 E3 interleukin 17 receptor E protein-coding 270163 Mm.249545 NM_173018 ENSMUSG00000039585 Myo9a 4732465J09Rik|C130068I12Rik|C230003M11 - 9 B|9 32.13 cM myosin IXa protein-coding 60724 D9Mit90 - - 9 17.8 cM DNA segment, Chr 9, Massachusetts Institute of Technology 90 unknown 665339 Gm11977 - - 11|11 A1 retinoblastoma binding protein 5 pseudogene pseudo 76001 Mm.399753 XR_388120 5033426O07Rik - - 8|8 E1 RIKEN cDNA 5033426O07 gene ncRNA 13130 da - - - dark unknown 59029 Mm.218198 NM_021526 ENSMUSG00000026914 Psmd14 2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11 - 2|2 C1.3 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 protein-coding 112103 Bglq9 - - 12 21.09 cM body growth late QTL 9 unknown 16699 Mm.353193 NM_010671 ENSMUSG00000050224 Krtap13 4C32 - 16|16 C3.3 keratin associated protein 13 protein-coding 258361 Mm.223052 NM_146364 ENSMUSG00000110253 Olfr495 MOR204-37 - 7|7 E3 olfactory receptor 495 protein-coding 21159 T(3;10)61H T61H - - reciprocal translocation, Chr 3 and 10, Harwell 61 other 105243580 XR_871391 Gm39465 - - 9 F4|9 predicted gene, 39465 ncRNA 77402 Mm.35628 9530018F02Rik - - 12|12 RIKEN cDNA 9530018F02 gene protein-coding 100048911 Mm.442669 D930003E18Rik - - - RIKEN cDNA D930003E18 gene unknown 102633737 XR_388651 Gm31490 - - 11 B1.3|11 predicted gene, 31490 ncRNA 230648 Mm.283565 NM_172698 ENSMUSG00000034210 Efcab14 4732418C07Rik - 4|4 D1 EF-hand calcium binding domain 14 protein-coding 69823 Mm.12831 NM_027226 ENSMUSG00000022800 Fyttd1 2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190 - 16|16 B3 forty-two-three domain containing 1 protein-coding 235610 Mm.100622 NM_172774 ENSMUSG00000025646 Atrip 6620401K05Rik - 9|9 F2 ATR interacting protein protein-coding 100041102 Mm.420028 NM_001243937 ENSMUSG00000095074 Gm3139 - - 5 E3|5 predicted gene 3139 protein-coding 243373 Mm.26678 NM_177737 ENSMUSG00000053297 AI854703 AI182503|D630044C04 - 6|6 B2.3 expressed sequence AI854703 pseudo 102632390 XR_385629 Gm30475 - - 17 C|17 predicted gene, 30475 ncRNA 77975 Mm.290341 NM_030018 ENSMUSG00000022964 Tmem50b AU015466|AU019872|B230114J08Rik - 16|16 C3.3 transmembrane protein 50B protein-coding 100503093 Gm11334 - - 13|13 9.55 cM predicted gene 11334 pseudo 227154 Mm.286006 NM_172656 ENSMUSG00000026027 Stradb AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb - 1 C1.3|1 29.2 cM STE20-related kinase adaptor beta protein-coding 102632174 XR_374873 Gm30319 - - 2 E3|2 predicted gene, 30319 ncRNA 100038518 Plast3 - - - plasma plant sterol 3 unknown 224805 Mm.329063 NM_198608 ENSMUSG00000023938 Aars2 Aarsl|AlaRS|Gm89 - 17|17 B3 alanyl-tRNA synthetase 2, mitochondrial protein-coding 61382 D5Mit110 - - 5 35.95 cM DNA segment, Chr 5, Massachusetts Institute of Technology 110 unknown 100040326 Gm12741 - - 4|4 C7 ribosomal protein L9 pseudogene pseudo 111290 Hmgn2-rs2 Hmg17-rs2 - - high mobility group nucleosomal binding domain 2, related sequence 2 pseudo 665625 Vmn2r-ps51 - - 7|7 A1 vomeronasal 2, receptor, pseudogene 51 pseudo 30954 Mm.289812 NM_013929 ENSMUSG00000064326 Siva1 CD27bp|Siva - 12|12 F1 SIVA1, apoptosis-inducing factor protein-coding 547035 Kdm4dl EG547035|Gm27205|Gm6017 - 9|9 A2 lysine (K)-specific demethylase 4D-like pseudo 27953 D16Nds2 - - - DNA segment, Chr 16, Nuffield Department of Surgery 2 unknown 100038370 Mm.439873 4932427H20Rik - - - RIKEN cDNA 4932427H20 gene protein-coding 100035809 Motr1 - - - modifier of tubby retinal degeneration 1 unknown 100417636 Gm18726 - - 12|12 A3 zinc finger CCCH type containing 14 pseudogene pseudo 383499 Gm5252 EG383499 - 1|1 A3 protein arginine N-methyltransferase pseudogene pseudo 100861611 Gm21076 - - Y|Y predicted gene, 21076 protein-coding 100113420 Frct5 - - - fear conditioning traits 5 unknown 100101936 Trav12-4 - - 14|14 C2 T cell receptor alpha variable 12-4 pseudo 100416777 Gm18244 - - 12|12 A1.1 zinc finger protein 384 pseudogene pseudo 102638420 XR_382306 Gm34991 - - 13 A5|13 predicted gene, 34991 ncRNA 102632091 XR_385741 Gm30256 - - 17 E1.3|17 predicted gene, 30256 ncRNA 433170 Gm5503 EG433170 - 18|18 B1 O-sialoglycoprotein endopeptidase pseudogene pseudo 108168012 XR_001780640 Gm46361 - - 12 C3|12 predicted gene, 46361 ncRNA 100048427 Gm13875 - - 2|2 predicted gene 13875 pseudo 111238 Snrpn-ps1 - - - small nuclear ribonucleoprotein N, pseudogene 1 pseudo 61872 D1Mit338 - - - DNA segment, Chr 1, Massachusetts Institute of Technology 338 unknown 15551 Mm.445308 NM_010482 ENSMUSG00000049511 Htr1b - - 9 E1|9 44.61 cM 5-hydroxytryptamine (serotonin) receptor 1B protein-coding 101055632 XR_882315 Gm29582 - - Y A2|Y predicted gene 29582 ncRNA 105243738 XR_878290 Gm39546 - - X F4|X predicted gene, 39546 ncRNA 780860 Ighv10-2 - - 12|12 F2 immunoglobulin heavy variable V10-2 pseudo 319572 Mm.211663 NR_038040 ENSMUSG00000112366 C730027H18Rik - - 10|10 B5.3 RIKEN cDNA C730027H18 gene ncRNA 105242907 LOC105242907 - - 7 B1 60S ribosomal protein L21-like pseudo 223650 Mm.259929 NM_144848 Eppk1 6230424I18Rik|EPIPL|EPIPL1|EPPK - 15|15 D3 epiplakin 1 protein-coding 108167781 Gm46199 - - 10 B3|10 predicted gene, 46199 pseudo 674920 Gm15364 - - X|X A7.3 predicted gene 15364 pseudo 62346 D1Mit407 - - 1 89.89 cM DNA segment, Chr 1, Massachusetts Institute of Technology 407 unknown 433776 Gm13050 - - 4|4 E1 eukaryotic translation elongation factor pseudogene pseudo 102634473 Mm.484482 NR_136907 ENSMUSG00000100371 Gm29669 - - 1 B|1 predicted gene 29669 ncRNA 68203 Mm.29362 NM_001024474 ENSMUSG00000047842 Diras2 2900052J15Rik|AI414999 - 13|13 A5 DIRAS family, GTP-binding RAS-like 2 protein-coding 69227 Mm.270950 NM_001040396 ENSMUSG00000075700 Selenot 2810407C02Rik|5730408P04Rik|Selt - 3|3 D selenoprotein T protein-coding 62356 D1Mit459 - - 1 91.86 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 459 unknown 97629 C76711 - - - expressed sequence C76711 unknown 319563 D130052P04Rik - - 17|17 RIKEN cDNA D130052P04 gene protein-coding 102631980 XM_017314869 Gm30172 - - 11 A1|11 predicted gene, 30172 pseudo 112265 Cia8 - - 10 38.48 cM collagen induced arthritis QTL 8 unknown 11567 Mm.10739 NM_009635 ENSMUSG00000025432 Avil Advil|DOC6 - 10|10 D3 advillin protein-coding 73606 Mm.444734 NR_045368 1700120E14Rik - - 18|18 E2 RIKEN cDNA 1700120E14 gene ncRNA 102638708 XR_385422 Gm35203 - - 17 A2|17 predicted gene, 35203 ncRNA 52542 D15Ertd154e - - 15 15.14 cM DNA segment, Chr 15, ERATO Doi 154, expressed unknown 60527 Mm.253875 NM_021890 ENSMUSG00000024664 Fads3 AI464531 - 19|19 A fatty acid desaturase 3 protein-coding 71888 Mm.440318 NM_027983 ENSMUSG00000035592 Krt33a 2310015J09Rik - 11|11 D keratin 33A protein-coding 320394 Mm.334775 NM_177150 ENSMUSG00000036672 Cenpt G630055P03Rik - 8|8 D3 centromere protein T protein-coding 384042 Gm12834 - - 4|4 D1 adaptor-related protein complex 2, beta 1 subunit pseudogene pseudo 75973 Mm.228517 NM_029493 ENSMUSG00000075225 Ccdc162 5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976 - 10|10 B2 coiled-coil domain containing 162 protein-coding 545637 Mm.457901 NM_001097978 ENSMUSG00000096530 Gm11758 - - 4|4 C3 predicted gene 11758 protein-coding 110851 Tarbp2-rs2 Prbp-ps - - TAR (HIV) RNA binding protein 2, related sequence 2 protein-coding 62269 D19Mit19 - - 19 34.08 cM DNA segment, Chr 19, Massachusetts Institute of Technology 19 unknown 102633689 Mm.317045 XR_382863 Gm31452 - - 13 D2.1|13 predicted gene, 31452 ncRNA 226439 Mm.491831 NM_001270609 ENSMUSG00000097918 Ascl5 Ascl5-ps|Gm197|bHLHa47 - 1|1 E4 achaete-scute family bHLH transcription factor 5 protein-coding 11804 Mm.19133 NM_009691 ENSMUSG00000031996 Aplp2 AI790698|APLP-2|CDEBP - 9 A4|9 16.66 cM amyloid beta (A4) precursor-like protein 2 protein-coding 100416951 Gm18333 - - 2|2 F1 Casitas B-lineage lymphoma pseudogene pseudo 627871 Gm6802 EG627871 - 12|12 A1.2 predicted gene 6802 unknown 99468 BB236304 - - - expressed sequence BB236304 protein-coding 100040191 Mm.380976 Krtap19-9a Gm9829|Krtap16-10a - 16|16 C3.3 keratin associated protein 19-9A protein-coding 15251 Mm.3879 NM_010431 ENSMUSG00000021109 Hif1a AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78 - 12 C3|12 31.99 cM hypoxia inducible factor 1, alpha subunit protein-coding 102632114 XR_001778593 Gm30271 - - 8 C1|8 predicted gene, 30271 ncRNA 75323 Mm.362968 NR_037999 ENSMUSG00000097519 4930558J18Rik - - 1|1 C1.3 RIKEN cDNA 4930558J18 gene ncRNA 624681 Mm.471592 NM_030747 ENSMUSG00000092618 Btnl6 EG624681|Gm6519|NG13 - 17 B1|17 18.1 cM butyrophilin-like 6 protein-coding 105245309 XR_872123 Gm40784 - - 10 D2|10 predicted gene, 40784 ncRNA 27520 B396H6S - - - DNA segment, B396H6S unknown 100040809 Gm2979 - - 3|3 A3 predicted gene 2979 pseudo 110011 Cfm1 Cftrm - 7|7 cystic fibrosis modifier 1 protein-coding 102638694 LOC102638694 - - - uncharacterized LOC102638694 ncRNA 218877 Mm.27812 NM_001025379 ENSMUSG00000021904 Sema3g AK129018 - 14|14 B sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G protein-coding 105246365 Mm.402339 XR_877173 Gm41664 - - 18 A1|18 predicted gene, 41664 ncRNA 242484 Mm.23214 NM_178727 ENSMUSG00000052117 D630039A03Rik - - 4|4 B3 RIKEN cDNA D630039A03 gene protein-coding 666922 Gm8365 EG666922 - 5 E5|5 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100039220 Gm12751 - - 4|4 A5 polymerase (RNA) I polypeptide D pseudogene pseudo 107945 Defa-rs9 CRS4C-3|Defcr-rs9 - - defensin, alpha, related sequence 9 protein-coding 102639477 Gm35781 - - 19 C1|19 UPF0729 protein C18orf32 homolog pseudogene pseudo 102639702 XM_006528352 Gm35953 - - X A6|X predicted gene, 35953 protein-coding 108168507 Gm46702 - - Y B|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 102634584 XR_373751 2900024J01Rik - - 1|1 H4 RIKEN cDNA 2900024J01 gene ncRNA 102636181 XR_383463 Gm33321 - - 14 C3|14 predicted gene, 33321 ncRNA 671297 Gm14856 - - X|X D TM2 domain containing 2 pseudogene pseudo 76246 Mm.33437 NM_030112 ENSMUSG00000027304 Rtf1 2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82 - 2|2 E5 RTF1, Paf1/RNA polymerase II complex component protein-coding 102633083 XR_382001 Gm30996 - - 12 F2|12 predicted gene, 30996 ncRNA 102633641 Gm31422 - - Y|Y predicted gene, 31422 ncRNA 72902 Mm.334552 NM_023689 ENSMUSG00000054162 Spock3 2900045C01Rik|AI428471|mKIAA4039 - 8|8 B3.1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3 protein-coding 13619 Mm.6822 NM_007905 ENSMUSG00000040669 Phc1 AW557034|Edr|Edr1|Mph1|Rae-28|rae28 - 6 F1|6 57.52 cM polyhomeotic 1 protein-coding 109832 H25 H-25 - - histocompatibility 25 protein-coding 16170 Mm.10137 NM_010551 ENSMUSG00000001741 Il16 mKIAA4048 - 7 D3|7 47.43 cM interleukin 16 protein-coding 100502691 Gm11633 - - 11|11 61.42 cM cytochrome c oxidase subunit 5A, mitochondrial-like pseudo 102631760 XR_375368 Gm30017 - - 2 H4|2 predicted gene, 30017 ncRNA 20732 Mm.104955 NM_016907 ENSMUSG00000027315 Spint1 HAI-1 - 2|2 E5 serine protease inhibitor, Kunitz type 1 protein-coding 100039240 Mm.483167 NM_001109969 ENSMUSG00000095293 Gm10058 - - X A2|X predicted gene 10058 protein-coding 52331 Mm.21965 NM_175096 ENSMUSG00000047963 Stbd1 D530019K15Rik|D5Ertd593e - 5 E2|5 47.21 cM starch binding domain 1 protein-coding 111270 Srpk1-ps1 - - - serine/arginine-rich protein specific kinase 1, pseudogene 1 pseudo 72230 Mm.289689 NM_028160 ENSMUSG00000074500 Zfp558 1700007A21Rik|4932704I17Rik|Zfp558-ps - 9|9 A2 zinc finger protein 558 protein-coding 433082 Mm.237134 D930048G16Rik - - 17|17 A3.3 RIKEN cDNA D930048G16 gene unknown 100416062 Gm13423 - - 2|2 A3 nucleophosmin 1 pseudogene pseudo 105244684 XR_868137 Gm40246 - - 4 D2.2|4 predicted gene, 40246 ncRNA 105245196 Gm40682 - - 10|10 predicted gene, 40682 ncRNA 320202 Mm.87078 NM_177099 ENSMUSG00000066652 Lefty2 6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B - 1|1 H4 left-right determination factor 2 protein-coding 78717 Mm.169482 D530014G21Rik - - 8|8 A1.1 RIKEN cDNA D530014G21 gene unknown 67198 Mm.159989 NM_144882 ENSMUSG00000038305 Spats2l 2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586 - 1|1 C1.3 spermatogenesis associated, serine-rich 2-like protein-coding 76261 Mm.38143 NM_029554 ENSMUSG00000060512 0610040J01Rik AI662686 - 5|5 C3.1 RIKEN cDNA 0610040J01 gene protein-coding 21099 T(16;17)43H T43H - - reciprocal translocation, Chr 16 and 17, Harwell 43 other 102639529 XR_377341 ENSMUSG00000107847 Gm35822 Gm44004 - 6 A1|6 predicted gene, 35822 ncRNA 102638522 XR_867620 Gm35065 Gm43591 - 3 G1|3 predicted gene, 35065 ncRNA 100417463 Gm18625 - - 12|12 D2 GLE1 RNA export mediator pseudogene pseudo 100043381 NM_001099349 ENSMUSG00000078880 Gm14308 - - 2 H4|2 predicted gene 14308 protein-coding 102633279 XR_379580 Gm31141 - - 9 C|9 predicted gene, 31141 ncRNA 73106 Mm.491308 NM_001042710 ENSMUSG00000020323 Prss57 2900092M14Rik|GLGL782|NSP4|Prssl1|UNQ782 - 10|10 C1 protease, serine 57 protein-coding 68888 Mm.46387 NM_026860 ENSMUSG00000030048 Gkn3 1190003M12Rik - 6|6 D1 gastrokine 3 protein-coding 100041890 Mm.423382 NM_001177521 ENSMUSG00000094818 Defa32 Gm15308 - 8 A2|8 defensin, alpha, 32 protein-coding 102243 Mm.442359 AU024581 - - - expressed sequence AU024581 unknown 102637975 XR_380014 ENSMUSG00000110863 Gm34655 - - 9 F4|9 predicted gene, 34655 ncRNA 100035614 Baa2 - - 1 44.69 cM BALB/c autoimmunity 2 unknown 75213 4930544L20Rik - - 7|7 RIKEN cDNA 4930544L20 gene protein-coding 108167714 XR_001779354 Gm46149 - - 9 E3.3|9 predicted gene, 46149 ncRNA 20954 sy - - - shaker-with-syndactylism deletion region unknown 237320 Mm.90181 NM_178713 ENSMUSG00000037542 Aldh8a1 Raldh4 - 10|10 A3 aldehyde dehydrogenase 8 family, member A1 protein-coding 100035500 Kwq14 Kwq8 - - kidney weight QTL 14 unknown 105243494 XR_870990 Gm39398 - - 9 E3.1|9 predicted gene, 39398 ncRNA 22277 us - - - urogenital syndrome unknown 18631 Mm.20615 NM_011068 ENSMUSG00000030545 Pex11a PEX11alpha - 7|7 D2 peroxisomal biogenesis factor 11 alpha protein-coding 12964 Mm.26904 NM_007774 ENSMUSG00000044429 Cryga Cryg-4|DGcry-4 - 1 C2|1 32.84 cM crystallin, gamma A protein-coding 53113 EC351RR - - - DNA segment, EC351RR unknown 109509 Sle4 - - - systemic lupus erythematosus susceptibility 4 unknown 22282 Mm.322453 NM_011680 ENSMUSG00000058239 Usf2 Usf-2|bHLHb12 - 7 B1|7 19.27 cM upstream transcription factor 2 protein-coding 108937 Mm.323087 NM_175388 ENSMUSG00000058761 Rnf169 2900057K09Rik - 7|7 E2 ring finger protein 169 protein-coding 56368 Mm.24833 NM_019720 ENSMUSG00000037190 Cyb561d2 AW049681|Tsp10 - 9|9 F1 cytochrome b-561 domain containing 2 protein-coding 777602 AW742323 - - 1|1 expressed sequence AW742323 unknown 243910 Mm.386878 NM_172142 ENSMUSG00000036931 Nfkbid I-kappa-B-delta|IkappaBNS|ikB-delta - 7|7 B1 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta protein-coding 669737 Gm15043 - - X|X F1 predicted gene 15043 pseudo 100418404 Gm19187 - - 7|7 B5 solute carrier family 1 (neutral amino acid transporter), member 5 pseudogene pseudo 105242433 XM_011243934 Gm38702 - - 12 A1.2|12 predicted gene, 38702 protein-coding 15182 Mm.19806 NM_008229 ENSMUSG00000019777 Hdac2 D10Wsu179e|YAF1|Yy1bp|mRPD3 - 10 19.44 cM|10 B1 histone deacetylase 2 protein-coding 101969 AA672651 - - - expressed sequence AA672651 protein-coding 60833 D4Mit81 - - 4 37.89 cM DNA segment, Chr 4, Massachusetts Institute of Technology 81 unknown 73426 Mm.396239 NR_040465 ENSMUSG00000101634 1700066B17Rik - - 1|1 B RIKEN cDNA 1700066B17 gene ncRNA 100124554 Vmn2r-ps10 Gm16319 - 3|3 E1 vomeronasal 2, receptor, pseudogene 10 pseudo 101056129 Gm29784 - - 5|5 predicted gene, 29784 pseudo 74547 9030622M22Rik - - 8|8 RIKEN cDNA 9030622M22 gene protein-coding 19082 Mm.6670 NM_016781 ENSMUSG00000067713 Prkag1 AA571379|BB036179|Prkaac - 15 F1|15 54.73 cM protein kinase, AMP-activated, gamma 1 non-catalytic subunit protein-coding 102632657 XR_390520 Gm12678 - - 4 B1|4 23.63 cM predicted gene 12678 ncRNA 109280125 LOC109280125 Mm1377 - - VISTA enhancer mm1377 biological-region 105243553 XR_001780353 LOC105243553 - - 11 E1 uncharacterized LOC105243553 ncRNA 102466999 NR_106111 ENSMUSG00000099082 Mir7036b Gm27625|mmu-mir-7036b - 5|5 B2 microRNA 7036b ncRNA 75175 Mm.399335 NR_040565 4930542C21Rik - - 16|16 B3 RIKEN cDNA 4930542C21 gene ncRNA 102465648 NR_106038 ENSMUSG00000099076 Mir7070 Gm27565|mmu-mir-7070 - 8|8 C3 microRNA 7070 ncRNA 100044381 Znf729 - - 5|5 zinc finger protein 729 protein-coding 100518 AA516635 - - - expressed sequence AA516635 unknown 28000 Mm.491104 NM_134129 ENSMUSG00000024735 Prpf19 AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev - 19 A|19 7.33 cM pre-mRNA processing factor 19 protein-coding 108169192 XR_001785439 LOC108169192 - - 6 C1 uncharacterized LOC108169192 ncRNA 69952 Mm.158311 NR_045047 ENSMUSG00000097929 Tunar 2810011L19Rik|Tuna - 12|12 E Tcl1 upstream neural differentiation associated RNA ncRNA 109279882 LOC109279882 Mm14 - - VISTA enhancer mm14 biological-region 170719 Mm.254267 NM_130885 ENSMUSG00000022307 Oxr1 2210416C20Rik|C7|C7B - 15|15 B3.1 oxidation resistance 1 protein-coding 102633217 Gm29633 - - Y|Y predicted gene 29633 ncRNA 27458 E2R - - - DNA segment, E2R unknown 108167963 XM_017315292 Gm46320 - - 12 F1|12 predicted gene, 46320 protein-coding 101236 Mm.388104 AU016938 - - - expressed sequence AU016938 protein-coding 241656 Mm.131572 NM_172858 ENSMUSG00000039913 Pak7 2900083L08Rik|PAK-5|PAK-7|Pak5 - 2|2 F3 p21 (RAC1) activated kinase 7 protein-coding 17130 Mm.325757 NM_008542 ENSMUSG00000036867 Smad6 Madh6|b2b390Clo - 9|9 C SMAD family member 6 protein-coding 108465 Ms36 MMS36 - - minisatellites detected by probe MMS36 other 331026 Mm.22554 NM_177910 ENSMUSG00000070284 Gmppb AI317178|E430010H19 - 9|9 F1 GDP-mannose pyrophosphorylase B protein-coding 100093695 Trnastop-uca - - - transfer RNA opal suppressor (anticodon UCA) tRNA 100038361 Mm.484837 Gm10723 - - - predicted gene 10723 unknown 100418227 Gm19084 - - 12|12 A1.1 eukaryotic translation initiation factor 3, subunit B pseudogene pseudo 106131 AA589532 - - - expressed sequence AA589532 unknown 100113417 Frct3 - - - fear conditioning traits 3 unknown 66934 Mm.25410 NM_025853 ENSMUSG00000027635 Dsn1 1700022L09Rik|AW552447 - 2|2 H1 DSN1 homolog, MIS12 kinetochore complex component protein-coding 105244899 XR_872762 Gm40425 - - 12 C1|12 predicted gene, 40425 ncRNA 623519 Gm6438 EG623519 - 16|16 A3 predicted gene 6438 pseudo 85036 D4Mit2 - - 4 10.61 cM DNA segment, Chr 4, Massachusetts Institute of Technology 2 unknown 100038727 Gm10811 - - - predicted gene 10811 protein-coding 240261 Mm.329416 NM_001160399 ENSMUSG00000071855 Ccdc112 8430438M01Rik|AW108467 - 18|18 C coiled-coil domain containing 112 protein-coding 245522 Mm.336158 NM_001003916 ENSMUSG00000035062 Zc4h2 Gm372|mKIAA1166 - X|X C3 zinc finger, C4H2 domain containing protein-coding 20591 Mm.142655 NM_013668 ENSMUSG00000025332 Kdm5c D930009K15Rik|Jarid1c|Smcx|mKIAA0234 - X F3|X 68.46 cM lysine (K)-specific demethylase 5C protein-coding 67786 Mm.482307 6230424C14Rik - - 13|13 RIKEN cDNA 6230424C14 gene protein-coding 224291 Mm.246580 NM_173861 ENSMUSG00000068167 Csnka2ip Ckt2 - 16|16 C1.3 casein kinase 2, alpha prime interacting protein protein-coding 56711 Mm.331467 NM_019969 ENSMUSG00000003282 Plag1 - - 4|4 A1 pleiomorphic adenoma gene 1 protein-coding 108167739 XR_001779517 LOC108167739 - - 1 H2.1 uncharacterized LOC108167739 ncRNA 66724 Mm.119646 NM_025729 ENSMUSG00000035476 Tab3 4921526G09Rik|Map3k7ip3|mKIAA4135 - X|X C1 TGF-beta activated kinase 1/MAP3K7 binding protein 3 protein-coding 768271 Mm.150542 XR_105843 BE949265 - - 17 B3|17 cDNA sequence BE949265 unknown 228421 Mm.274086 NM_139303 ENSMUSG00000027115 Kif18a AU024633|B130001M12Rik|gcd2 - 2|2 E3 kinesin family member 18A protein-coding 100303736 Mm.453529 NR_028446 ENSMUSG00000077767 Snora35 MBI-36 - X|X F2 small nucleolar RNA, H/ACA box 35 snoRNA 320023 6720467L15Rik - - 6|6 RIKEN cDNA 6720467L15 gene protein-coding 100042735 Obox4-ps20 Gm3998 - 7 A2|7 oocyte specific homeobox 4, pseudogene 20 pseudo 666173 Mm.309250 NM_177151 ENSMUSG00000037646 Vps13b 1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032 - 15|15 B3.1 vacuolar protein sorting 13B protein-coding 74945 Mm.401956 NR_040613 ENSMUSG00000086529 Acss2os 4930471I20Rik - 2|2 H1 acyl-CoA synthetase short-chain family member 2, opposite strand ncRNA 436468 Trav15d-1-dv6d-1 Gm13979|Tradv15d-1|Trav15d-1/dv6d-1 - 14 C2|14 T cell receptor alpha variable 15D-1-DV6D-1 other 11974 Mm.22602 NM_025272 ENSMUSG00000015575 Atp6v0e Atp6k|Atp6v0e1|M9.2 - 17|17 A3.3 ATPase, H+ transporting, lysosomal V0 subunit E protein-coding 74083 Mm.2000 4933411K05Rik - - 9|9 RIKEN cDNA 4933411K05 gene protein-coding 106017 Mm.385034 AW050190 - - - expressed sequence AW050190 unknown 18141 Mm.28379 NM_016714 ENSMUSG00000016619 Nup50 1700030K07Rik|AI413123|Npap60 - 15 E2|15 40.25 cM nucleoporin 50 protein-coding 105246441 Mm.410788 XR_877412 4933434P08Rik - - 18|18 D3 RIKEN cDNA 4933434P08 gene ncRNA 105244541 XR_867595 Gm40134 - - 3 G1|3 predicted gene, 40134 ncRNA 102636064 Gm28542 - - Y|Y predicted gene 28542 pseudo 80880 Mm.196330 NM_030697 ENSMUSG00000042099 Kank3 0610013D04Rik|Ankrd47|D17Ertd288e|NG28 - 17 B1|17 17.98 cM KN motif and ankyrin repeat domains 3 protein-coding 105243193 Mm.488994 Gm39182 - - 8|8 predicted gene, 39182 ncRNA 105242679 XR_869172 Gm38830 - - 6 C1|6 predicted gene, 38830 ncRNA 77661 Mm.440269 1520401O13Rik - - 4|4 D2.2 RIKEN cDNA 1520401O13 gene protein-coding 19612 Rb(8.12)22Lub Rb22Lub - - Robertsonian translocation, Chr 8 and 12, Lubeck 22 other 102632801 XR_377379 Gm30779 - - 6 A3.1|6 predicted gene, 30779 ncRNA 109696 Ath6 - - - atherosclerosis 6 protein-coding 17659 Ms73 MMS73 - - minisatellites detected by probe MMS73 other 102639749 Gm26230 - - 7|7 predicted gene, 26230 ncRNA 108167647 XR_001779145 LOC108167647 - - 9 A5.2 uncharacterized LOC108167647 ncRNA 102635385 XM_017313740 ENSMUSG00000110266 Gm32742 - - 9 A5.3|9 predicted gene, 32742 protein-coding 105244309 XR_866768 Gm39943 - - 2 F3|2 predicted gene, 39943 ncRNA 664994 Mm.302624 NM_001101598 ENSMUSG00000086784 Isoc2a Isoc2 - 7|7 A1 isochorismatase domain containing 2a protein-coding 110120387 LOC110120387 - - - VISTA enhancer mm580 biological-region 634762 Gm7145 EG634762 - 1|1 E2.3 predicted gene 7145 protein-coding 100043823 Mm.441469 Gm4673 - - 7 B1|7 predicted gene 4673 unknown 102640624 LOC102640624 - - 7 F2 60S ribosomal protein L32 pseudogene pseudo 170935 Mm.197460 NM_133355 ENSMUSG00000010825 Grid2ip - - 5|5 G2 glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1 protein-coding 97418 NR_002852 ENSMUSG00000095892 Rnu5g Rnu5a|U5a - 9|9 C RNA, U5G small nuclear snRNA 102640388 XR_385166 Gm36458 - - 17 A1|17 predicted gene, 36458 ncRNA 209448 Mm.31665 NM_010462 ENSMUSG00000022484 Hoxc10 AI506621|Hox-3.6 - 15 F3|15 58.03 cM homeobox C10 protein-coding 226970 Mm.41604 NM_183019 ENSMUSG00000037509 Arhgef4 9330140K16Rik|Asef - 1|1 B Rho guanine nucleotide exchange factor (GEF) 4 protein-coding 329540 Mm.50600 NM_001001986 ENSMUSG00000061411 Nol4l 4931410H15|8430427H17Rik|AI429157|Gm1636 - 2|2 H1 nucleolar protein 4-like protein-coding 100503410 Gm14795 - - X C1|X 39.95 cM jagunal homolog 1 pseudogene pseudo 17287 Mm.5346 NM_008585 ENSMUSG00000023914 Mep1a AI098089|AW107200|Mep-1|Mep-1a|Mep1 - 17 B3|17 19.73 cM meprin 1 alpha protein-coding 105244162 XR_879833 ENSMUSG00000110618 Gm39822 Gm45818 - 11 B1.3|11 predicted gene, 39822 ncRNA 497108 Ear-ps4 - - 14|14 C1 eosinophil-associated, ribonuclease A family, pseudogene 4 pseudo 666346 Gm8056 EG666346 - 8 C1|8 calponin 2 pseudogene pseudo 664956 Gm7424 EG664956 - 6|6 C3 60S ribosomal protein L5 pseudogene pseudo 20296 Mm.290320 NM_011333 ENSMUSG00000035385 Ccl2 AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje - 11 C|11 49.82 cM chemokine (C-C motif) ligand 2 protein-coding 75628 Mm.487763 1700010L13Rik - - 19|19 D2 RIKEN cDNA 1700010L13 gene protein-coding 100418067 Gm11511 - - 11|11 D eukaryotic translation initiation factor 2C, 2 pseudogene pseudo 269400 Mm.11333 NM_001001882 ENSMUSG00000038685 Rtel1 AI451565|AW540478|Rtel - 2|2 H4 regulator of telomere elongation helicase 1 protein-coding 319786 Mm.129691 NR_033340 B930059L03Rik - - 12|12 F1 RIKEN cDNA B930059L03 gene ncRNA 100416759 Gm13366 - - 2|2 A2 casein kinase 1, alpha 1 pseudogene pseudo 21834 Mm.32563 NM_009380 ENSMUSG00000021779 Thrb Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta - 14|14 A2 thyroid hormone receptor beta protein-coding 102639877 Gm48810 - - 8 B3.1|8 predicted gene, 48810 pseudo 319161 Mm.261664 NM_175657 ENSMUSG00000069305 Hist1h4n - - 13|13 A3.1 histone cluster 1, H4n protein-coding 102640739 XR_377853 Gm36735 - - 6 D1|6 predicted gene, 36735 ncRNA 108438 Xmmv59 Xmmv-59|Xp-18 - - xenotropic-MCF leukemia virus 59 other 102465891 NR_106178 ENSMUSG00000070109 Mir497b Gm27737|mmu-mir-497b - 11|11 B3 microRNA 497b ncRNA 320408 B230308P20Rik - - 2|2 RIKEN cDNA B230308P20 gene protein-coding 53015 CA7.7 - - - DNA segment, CA7.7 unknown 100417871 Gm15048 - - X|X F2 predicted gene 15048 pseudo 106489 Mm.311080 NM_134114 ENSMUSG00000073468 Sft2d1 5630401J11Rik|AA409698 - 17|17 A1 SFT2 domain containing 1 protein-coding 234703 Rpl10-ps2 EG234703|Gm4892 - 8|8 D3 ribosomal protein L10, pseudogene 2 pseudo 100124337 Traj51 Gm16924 - 14|14 C2 T cell receptor alpha joining 51 pseudo 111458 Qa2 H2-Qa2|Ped|Qa-2 - - Qa lymphocyte antigen 2 region other 672095 Gm9547 - - 14|14 C3 non-POU-domain-containing, octamer binding protein pseudogene pseudo 105243062 XR_869967 Gm39093 - - 7 F3|7 predicted gene, 39093 ncRNA 100126077 Mom7 - - - modifier of Min 7 unknown 102465607 NR_105970 ENSMUSG00000099091 Mir7003 Gm27340|mmu-mir-7003 - 2|2 H2 microRNA 7003 ncRNA 210762 Mm.292354 NM_001163103 ENSMUSG00000052221 Ppp1r36 Gm70 - 12|12 C3 protein phosphatase 1, regulatory subunit 36 protein-coding 79203 167L17-T7 - - - DNA segment, 167L17-T7 unknown 630028 Gm7023 - - X|X A3.2 actin, beta pseudogene pseudo 359864 DXMgc81 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 81 unknown 105242531 Gm38721 - - 5|5 predicted gene, 38721 ncRNA 100502978 Gm19484 - - 13 A5|13 25.62 cM predicted gene, 19484 pseudo 78624 Mm.57574 1700048G13Rik - - 16|16 RIKEN cDNA 1700048G13 gene protein-coding 105246301 Gm41605 - - 17|17 predicted gene, 41605 ncRNA 73807 Mm.261185 4930403P22Rik - - 1|1 RIKEN cDNA 4930403P22 gene protein-coding 102467379 n-TSgct4 n-Ts18 - 13 A3.1|13 nuclear encoded tRNA serine 4 (anticodon GCT) tRNA 69993 Mm.321147 NM_023543 ENSMUSG00000004633 Chn2 1700026N20Rik|4930557O16Rik|ARHGAP3|Bch - 6|6 B3 chimerin 2 protein-coding 102466241 NR_106163 ENSMUSG00000098521 Mir7243 Gm27363|mmu-mir-7243 - 9|9 F1 microRNA 7243 ncRNA 108167672 XR_001779251 Gm29415 - - 9|9 E3.1 predicted gene 29415 ncRNA 258499 Mm.377538 NM_146506 ENSMUSG00000063380 Olfr945 MOR171-20 - 9|9 A5.1 olfactory receptor 945 protein-coding 104244 Sr1 Sr-1 - - spectrotype regulation unknown 278097 Mm.113272 NM_001007578 ENSMUSG00000050394 Armcx6 AW060994 - X|X E3 armadillo repeat containing, X-linked 6 protein-coding 102467337 n-TLcag9 n-Tl21 - 1 H3|1 nuclear encoded tRNA leucine 9 (anticodon CAG) tRNA 102640461 XR_380315 Gm36517 - - 10 B4|10 predicted gene, 36517 ncRNA 52764 D1Bwg0420e - - - DNA segment, Chr 1, Brigham & Women's Genetics 0420 expressed unknown 11639 Mm.42040 NM_009647 ENSMUSG00000028527 Ak4 AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e - 4 C6|4 46.84 cM adenylate kinase 4 protein-coding 105244154 XR_879813 Gm39816 - - 11 B1.1|11 predicted gene, 39816 ncRNA 100035858 W10q12 - - 17 19.62 cM weight 10 weeks QTL 12 unknown 11624 Mm.290446 NM_009644 ENSMUSG00000021575 Ahrr mKIAA1234 - 13|13 C1 aryl-hydrocarbon receptor repressor protein-coding 102635920 XR_381235 Gm33134 - - 12 A1.1|12 predicted gene, 33134 ncRNA 109864 Ly28 Ly-28 - - lymphocyte antigen 28 protein-coding 81004 Mm.202966 NM_030732 ENSMUSG00000027630 Tbl1xr1 8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1 - 3|3 A3 transducin (beta)-like 1X-linked receptor 1 protein-coding 100526479 NR_037243 ENSMUSG00000093076 Mir3082 mir-3082|mmu-mir-3082 - 17 A3.3|17 12.93 cM microRNA 3082 ncRNA 102638076 XR_378539 Gm34725 - - 7 F3|7 predicted gene, 34725 ncRNA 30932 Mm.269248 NM_145600 ENSMUSG00000031711 Zfp330 BC008086|Noa36|Znf330 - 8|8 C2 zinc finger protein 330 protein-coding 18606 Mm.250256 NM_015744 ENSMUSG00000022425 Enpp2 ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD - 15|15 D1 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 26410 Mm.3275 NM_007746 ENSMUSG00000024235 Map3k8 Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT - 18 A1|18 2.73 cM mitogen-activated protein kinase kinase kinase 8 protein-coding 102635729 XR_388792 Gm32992 - - 11 B3|11 predicted gene, 32992 ncRNA 98657 Mm.44723 AW050000 - - - expressed sequence AW050000 protein-coding 102637554 XR_382404 Gm34332 - - 13 B1|13 predicted gene, 34332 ncRNA 72943 2900018E21Rik - - 10|10 RIKEN cDNA 2900018E21 gene protein-coding 319224 Mm.477035 NR_040589 ENSMUSG00000105960 6330410L21Rik - - 3|3 G3 RIKEN cDNA 6330410L21 gene ncRNA 664703 Cypt13 - - X|X cysteine-rich perinuclear theca 13 protein-coding 246735 Mm.473773 NM_145229 ENSMUSG00000044820 AY074887 Mcpr1 - 9|9 B cDNA sequence AY074887 protein-coding 665821 Rpl21-ps10 EG665821|Gm7806 - 3|3 B ribosomal protein L21, pseudogene 10 pseudo 102636127 XR_379986 Gm33285 - - 9 F3|9 predicted gene, 33285 ncRNA 242620 Mm.32825 NM_172296 ENSMUSG00000047143 Dmrta2 Dmrt5 - 4|4 C7 doublesex and mab-3 related transcription factor like family A2 protein-coding 17436 Mm.148155 NM_008615 ENSMUSG00000032418 Me1 D9Ertd267e|Mdh-1|Mod-1|Mod1 - 9 E3.1|9 46.58 cM malic enzyme 1, NADP(+)-dependent, cytosolic protein-coding 435653 Mm.337931 NM_001029984 ENSMUSG00000070524 Fcrlb FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2 - 1|1 H3 Fc receptor-like B protein-coding 100125340 A230083N12Rik - - - RIKEN cDNA A230083N12 gene protein-coding 236727 Mm.132983 NM_177353 ENSMUSG00000037341 Slc9a7 A530087D17Rik|NHE7 - X|X A1.3 solute carrier family 9 (sodium/hydrogen exchanger), member 7 protein-coding 104729 AA511268 - - - expressed sequence AA511268 unknown 97187 Mm.422698 NM_001177542 ENSMUSG00000046262 C87977 C85819 - 4|4 E1 expressed sequence C87977 protein-coding 102633879 XR_376871 Gm31601 - - 5 B2|5 predicted gene, 31601 ncRNA 116516 Eae24 - - 8 12.86 cM experimental allergic encephalomyelitis susceptibility 24 unknown 76273 Mm.290669 NM_029561 ENSMUSG00000053253 Ndfip2 0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165 - 14|14 E2.3 Nedd4 family interacting protein 2 protein-coding 242653 Mm.130701 NM_153105 ENSMUSG00000066058 Cldn19 - - 4|4 D2.1 claudin 19 protein-coding 108478 Ms86 MMS86 - - minisatellites detected by probe MMS86 other 20654 soc - - - soft coat unknown 70579 Mm.245357 NM_144530 ENSMUSG00000102976 Zc3h11a 1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663 - 1|1 E4 zinc finger CCCH type containing 11A protein-coding 73636 1700125C05Rik - - 13|13 RIKEN cDNA 1700125C05 gene protein-coding 98653 Mm.487076 AW049021 - - 1|1 E4 expressed sequence AW049021 ncRNA 668327 Gm9108 EG668327 - 15|15 F3 hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit pseudogene pseudo 100038352 Gm10802 - - - predicted gene 10802 protein-coding 102467601 n-TTagt1 n-Tt1 - 13 A3.1|13 nuclear encoded tRNA threonine 1 (anticodon AGT) tRNA 436003 Mm.475617 NM_001127686 ENSMUSG00000078621 Hbb-bh2 EG436003|Gm5736 - 7 54.85 cM|7 E3 hemoglobin beta, bh2 protein-coding 215708 Mm.135018 NM_174868 ENSMUSG00000054942 Miga1 A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1 - 3|3 H3 mitoguardin 1 protein-coding 65969 Mm.313915 NM_001081084 ENSMUSG00000026726 Cubn AA408369|AL022750|D2Wsu88e - 2 A1|2 9.86 cM cubilin (intrinsic factor-cobalamin receptor) protein-coding 547302 Gm6031 EG547302 - 16 A1|16 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene pseudo 258863 Mm.377725 NM_146864 ENSMUSG00000050198 Olfr768 MOR114-4 - 10|10 D3 olfactory receptor 768 protein-coding 108168035 XR_001780728 LOC108168035 - - 12 F1 uncharacterized LOC108168035 ncRNA 74704 Mm.393411 4930518I15Rik - - 2|2 RIKEN cDNA 4930518I15 gene unknown 72225 Mm.102193 NR_040647 1700003M07Rik - - 4|4 D2.2 RIKEN cDNA 1700003M07 gene ncRNA 100043101 Mm.480247 NM_001166842 ENSMUSG00000074291 Vmn1r168 Gm10659 - 7|7 A3 vomeronasal 1 receptor 168 protein-coding 102632039 Mm.410779 NR_155501 Gm30214 - - 14|14 predicted gene, 30214 ncRNA 258264 Mm.318723 NM_207156 ENSMUSG00000057179 Olfr747 MOR106-16|MOR106-7 - 14|14 C1 olfactory receptor 747 protein-coding 108452 Pmv66 Pmv-66 - - polytropic murine leukemia virus 66 other 114271 Manh7 QTL-SH6.1 - - mandible shape 7 unknown 111685 Mpmv6 Mpmv-6 - - modified polytropic murine leukemia virus 6 other 102638737 XR_385830 Gm35229 - - 17 E4|17 predicted gene, 35229 ncRNA 76376 Mm.490487 NM_172426 ENSMUSG00000037996 Slc24a2 2810021B17Rik|6330417K15Rik|AI847460|Nckx2 - 4|4 C4 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 protein-coding 102637748 Gm34480 - - 9|9 predicted gene, 34480 ncRNA 100417029 Gm18372 - - 15|15 E3 WEE1 homolog 2 pseudogene pseudo 14582 Mm.373385 NM_008114 ENSMUSG00000026815 Gfi1b Gfi-1B - 2|2 A3 growth factor independent 1B protein-coding 241274 Mm.389243 NM_146251 ENSMUSG00000036833 Pnpla7 BC027342|E430013P11Rik|Nre - 2|2 A3 patatin-like phospholipase domain containing 7 protein-coding 101055845 Gm29730 - - 1 B|1 predicted gene, 29730 pseudo 108167575 XM_017313053 Gm46065 - - 8 E1|8 predicted gene, 46065 protein-coding 53747 D10Led1 D10Led2|D10Led3 - - DNA segment, Chr 10, P. Leder 1 unknown 78086 NR_130989 ENSMUSG00000085619 4930555B12Rik - - X|X E1 RIKEN cDNA 4930555B12 gene ncRNA 109594 Mm.360145 NM_057173 ENSMUSG00000036111 Lmo1 Rbtn-1|Rbtn1|Ttg1 - 7 E3|7 57.21 cM LIM domain only 1 protein-coding 74953 Mm.401971 NR_045354 ENSMUSG00000086241 4930483K19Rik - - 10|10 C1 RIKEN cDNA 4930483K19 gene ncRNA 73095 Mm.185413 NM_001007570 ENSMUSG00000002346 Slc25a42 2900084M01Rik - 8|8 B3.3 solute carrier family 25, member 42 protein-coding 57421 Bhmt-ps1 - - 4|4 A3 betaine-homocysteine methyltransferase, pseudogene 1 pseudo 70719 Mm.243954 NM_027521 ENSMUSG00000035697 Arhgap45 6330406L22Rik|AW539505|Ha-1|Hmha1 - 10|10 C1 Rho GTPase activating protein 45 protein-coding 105245430 Gm40886 - - 12|12 predicted gene, 40886 protein-coding 667226 Gm8524 EG667226|Gm1856 - 9|9 E3.3 predicted gene 8524 pseudo 21929 Mm.116683 NM_009397 ENSMUSG00000019850 Tnfaip3 A20|Tnfip3 - 10 A3|10 8.08 cM tumor necrosis factor, alpha-induced protein 3 protein-coding 219189 Mm.159651 NM_027906 ENSMUSG00000058997 Vwa8 1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564 - 14|14 D3 von Willebrand factor A domain containing 8 protein-coding 629884 Mm.390491 Ighv1-26 Gm16717 - 12|12 F2 immunoglobulin heavy variable 1-26 other 74051 Mm.274956 NM_028734 ENSMUSG00000015653 Steap2 4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP - 5|5 A1 six transmembrane epithelial antigen of prostate 2 protein-coding 102636320 Gm33420 - - Y|Y tRNA methyltransferase 112 homolog pseudo 109280065 LOC109280065 Mm634 - - VISTA enhancer mm634 biological-region 19143 Mm.243926 NM_011176 ENSMUSG00000031995 St14 Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase - 9 A4|9 16.61 cM suppression of tumorigenicity 14 (colon carcinoma) protein-coding 102634034 Mm.448137 XR_388217 Gm31718 Gm45802 - 8 E2|8 predicted gene, 31718 ncRNA 76132 Mm.159689 NM_175234 ENSMUSG00000028246 Faxc 6230409E13Rik|AW742931 - 4|4 A3 failed axon connections homolog protein-coding 106522 Mm.311974 NM_134117 ENSMUSG00000024247 Pkdcc AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346 - 17 E4|17 52.25 cM protein kinase domain containing, cytoplasmic protein-coding 101055907 NM_001361166 Gm15246 - - X|X F5 predicted gene 15246 protein-coding 102631583 Gm13714 - - 2|2 49.66 cM predicted gene 13714 pseudo 320486 Mm.391625 NR_131125 ENSMUSG00000085589 A430078I02Rik T25621 - 6|6 D1 RIKEN cDNA A430078I02 gene ncRNA 100038909 Mm.3189 NM_001166672 ENSMUSG00000074417 Gm14548 - - 7|7 A1 predicted gene 14548 protein-coding 100038717 Mm.403533 Gm10826 - - - predicted gene 10826 unknown 110120552 LOC110120552 - - - VISTA enhancer mm1095 biological-region 111341 Ph - - - patch deletion region other 387222 NR_029744 ENSMUSG00000065610 Mir29a Mirn29a|mir-29a|mmu-mir-29a - 6|6 A3.3 microRNA 29a ncRNA 68527 Mm.27791 NM_026754 ENSMUSG00000026668 Ucma 1110017I16Rik|AW121955|Grp - 2|2 A1 upper zone of growth plate and cartilage matrix associated protein-coding 108168637 XM_017318845 ENSMUSG00000095242 LOC108168637 - - Y A1 Y-linked testis-specific protein 1-like protein-coding 435666 Gm13508 - - 2|2 C1.1 predicted gene 13508 pseudo 61917 D4Mit300 - - 4 42.15 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 300 unknown 66237 Mm.396107 NM_023179 ENSMUSG00000024403 Atp6v1g2 1500002D01Rik|Atp6g2|NG38|VAG2 - 17|17 B1 ATPase, H+ transporting, lysosomal V1 subunit G2 protein-coding 24054 sgl - - - scraggly unknown 100885838 NR_049199 ENSMUSG00000093710 Mir5625 Gm23930|mmu-mir-5625 - 5|5 B1 microRNA 5625 ncRNA 100040867 Mm.481748 NM_001166646 ENSMUSG00000096468 Gm16405 EG625802 - X|X A5 predicted gene 16405 protein-coding 105242392 XR_869219 Gm38676 - - 6 D1|6 predicted gene, 38676 ncRNA 69841 Mm.57938 2010002M09Rik - - 3|3 RIKEN cDNA 2010002M09 gene protein-coding 52058 D4Ertd76e - - 4 69.85 cM DNA segment, Chr 4, ERATO Doi 76, expressed unknown 76513 1810058N15Rik - - 19|19 A RIKEN cDNA 1810058N15 gene protein-coding 404309 Mm.377934 NM_207549 ENSMUSG00000108464 Olfr192 - - 16|16 C1.3 olfactory receptor 192 protein-coding 78651 Mm.28694 NM_030145 ENSMUSG00000031683 Lsm6 1500031N17Rik|2410088K19Rik|AI747288 - 8|8 C1 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 100093661 Trnat-cgu - - - transfer RNA threonine (anticodon CGU) tRNA 106557 Mm.432764 NM_175349 ENSMUSG00000101959 Ldhal6b 4933402O15Rik|AI326310|LDHL|Ldhal - 17|17 A1 lactate dehydrogenase A-like 6B protein-coding 208084 Mm.211032 NM_172453 ENSMUSG00000041064 Pif1 4631410M14|AI449441 - 9|9 C PIF1 5'-to-3' DNA helicase protein-coding 104072 Tol1 Tol-1 - - tolerance to BCG protein-coding 404356 Olfr240-ps1 MOR160-6_p - 15|15 F1 olfactory receptor 240, pseudogene 1 pseudo 258974 Mm.223365 NM_146972 ENSMUSG00000075091 Olfr1233 MOR238-1 - 2|2 E1 olfactory receptor 1233 protein-coding 56526 Mm.260036 NM_019942 ENSMUSG00000050379 Sept6 2810035H17Rik|C920001C06Rik|Sep6|mKIAA0128 - X|X A3.3 septin 6 protein-coding 100034995 Bmch7 - - 17 39.3 cM bone mechanical trait 7 unknown 12540 Mm.1022 NM_009861 ENSMUSG00000006699 Cdc42 AI747189|AU018915 - 4 D3|4 69.83 cM cell division cycle 42 protein-coding 105243318 XR_879317 Gm39275 - - 8 E1|8 predicted gene, 39275 ncRNA 258210 Olfr387-ps1 MOR135-17 - 11|11 B4 olfactory receptor 387, pseudogene 1 pseudo 100417148 Gm18423 - - 6|6 F3 predicted gene, 18423 pseudo 100534317 LOC100534317 - - 7|7 D1 actin, gamma, cytoplasmic 1 pseudogene pseudo 102637370 XR_383697 Gm34199 - - 14 E2.3|14 predicted gene, 34199 ncRNA 74264 Mm.39304 NM_028842 ENSMUSG00000083695 Rnf138rt1 - - X|X F5 ring finger protein 138, retrogene 1 protein-coding 102637613 Mm.406344 XR_381122 Gm12092 - - 11 A3.3|11 16.79 cM predicted gene 12092 ncRNA 102634630 NR_144499 Gm32168 - - 15 D3|15 predicted gene, 32168 ncRNA 53312 Mm.5856 NM_016736 ENSMUSG00000028954 Nub1 4931404D21Rik|6330412F12Rik|BS4|NY-REN-18 - 5|5 A3 negative regulator of ubiquitin-like proteins 1 protein-coding 723936 NR_029916 ENSMUSG00000065477 Mir411 Mirn411|mir-411|mmu-mir-411 - 12 F1|12 microRNA 411 ncRNA 66085 Mm.182962 NM_025344 ENSMUSG00000031029 Eif3f 0610037M02Rik|AA409853|Eif3s5 - 7|7 E3 eukaryotic translation initiation factor 3, subunit F protein-coding 76577 Mm.194459 NM_178397 ENSMUSG00000025873 Faf2 2210404D11Rik|AI462440|Ubxd8|mKIAA0887 - 13|13 B1 Fas associated factor family member 2 protein-coding 381522 Mm.54220 NM_198660 ENSMUSG00000035539 Ccdc180 E230008N13Rik|Gm1025 - 4|4 B1 coiled-coil domain containing 180 protein-coding 105243825 XR_872237 Gm39575 - - 11 A1|11 predicted gene, 39575 ncRNA 102635310 XR_374797 Gm32683 - - 2 E1|2 predicted gene, 32683 ncRNA 258604 Mm.271457 NM_146611 ENSMUSG00000095774 Olfr970 MOR171-16 - 9|9 A5.1 olfactory receptor 970 protein-coding 71158 Mm.442154 XR_001783388 4933423P22Rik Ptprj-as1 - 2|2 E1 RIKEN cDNA 4933423P22 gene ncRNA 668752 Gm9334 EG668752 - 14|14 E3 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene pseudo 102467464 n-TRacg2 n-Tr2 - 9 F4|9 nuclear encoded tRNA arginine 2 (anticodon ACG) tRNA 101314 Mm.485793 NM_133937 ENSMUSG00000033940 Brk1 6720456B07Rik|AW011779 - 6|6 E3 BRICK1, SCAR/WAVE actin-nucleating complex subunit protein-coding 13276 Del(14)23H Del23H - - deletion, Chr 14, Harwell 23 other 108167340 XR_875916 LOC108167340 - - 16 A1 sperm motility kinase 3-like protein-coding 100036117 Skmw14 - - 6 77.7 cM skeletal muscle weight 14 unknown 105245957 Mm.438068 Gm16006 - - 15|15 24.02 cM predicted gene 16006 ncRNA 67143 Mm.334273 NM_175115 ENSMUSG00000040167 Ikzf5 2610034F18Rik|PEGASUS|Zfpn1a5 - 7|7 F3 IKAROS family zinc finger 5 protein-coding 102467517 n-TEctc1 n-Te1 - - nuclear encoded tRNA glutamic acid 1 (anticodon CTC) tRNA 100312490 Vmn1r-ps29 Vmn1r-ps30 - 6 D1|6 vomeronasal 1 receptor, pseudogene 29 pseudo 14704 Mm.329700 NM_010316 ENSMUSG00000071658 Gng3 - - 19 A|19 5.76 cM guanine nucleotide binding protein (G protein), gamma 3 protein-coding 231602 Mm.55948 NM_153400 ENSMUSG00000029503 P2rx2 P2X2a|P2x2 - 5|5 F purinergic receptor P2X, ligand-gated ion channel, 2 protein-coding 17874 Mm.213003 NM_010851 ENSMUSG00000032508 Myd88 - - 9 F3|9 71.33 cM myeloid differentiation primary response gene 88 protein-coding 68303 Mm.258545 NM_026667 ENSMUSG00000029185 Fam114a1 1190001N04Rik|9130005N14Rik|Noxp20 - 5|5 C3.1 family with sequence similarity 114, member A1 protein-coding 108168376 XM_017318020 Gm46620 - - 18 E3|18 predicted gene, 46620 protein-coding 101056305 LOC101056305 - - - H-2 class I histocompatibility antigen, K-D alpha chain protein-coding 104721 Mm.251255 NM_134040 ENSMUSG00000037149 Ddx1 AA409185|DBP-RB - 12|12 A1.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 protein-coding 105245764 XR_874658 Gm41162 - - 14 C3|14 predicted gene, 41162 ncRNA 100418433 Gm19211 - - 3|3 F2.2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5 pseudogene pseudo 102631855 XR_388288 Gm30082 - - 19 A|19 predicted gene, 30082 ncRNA 102638413 Gm34987 - - 12|12 predicted gene, 34987 pseudo 78134 Mm.90147 NM_175271 ENSMUSG00000049929 Lpar4 5730485F04Rik|Gpr23|LPA4|p2y9 - X|X D lysophosphatidic acid receptor 4 protein-coding 52167 D8Ertd294e - - 8 41.61 cM DNA segment, Chr 8, ERATO Doi 294, expressed unknown 66914 Mm.30028 NM_025842 ENSMUSG00000115987 Vps28 1110014J03Rik|CIIA|D730005C08Rik - 15|15 D3 vacuolar protein sorting 28 protein-coding 102640969 Gm29603 - - 9|9 predicted gene 29603 pseudo 76957 2210019G11Rik - - 11|11 B2 RIKEN cDNA 2210019G11 gene protein-coding 27626 D11Moh6 - - 11 59.01 cM DNA segment, Chr 11, KL Mohlke 6 unknown 104510 AU022579 - - - expressed sequence AU022579 unknown 105245777 XR_874686 Gm41173 - - 14 D1|14 predicted gene, 41173 ncRNA 22423 Mm.88365 NM_011720 ENSMUSG00000036961 Wnt8b - - 19 C3|19 37.98 cM wingless-type MMTV integration site family, member 8B protein-coding 667395 Gm8607 EG667395 - 12|12 D3 predicted gene 8607 pseudo 634132 Trav7-2 Gm13952 - 14|14 C2 T cell receptor alpha variable 7-2 other 75569 Mm.243721 NR_045377 ENSMUSG00000101683 1700028D13Rik - - 5|5 F RIKEN cDNA 1700028D13 gene ncRNA 105246489 XR_877549 Gm41774 - - 18 E2|18 predicted gene, 41774 ncRNA 106622 Mm.435623 AI605517 - - - expressed sequence AI605517 protein-coding 74290 XR_869979 1700102J08Rik 9230113C19Rik - 7|7 F3 RIKEN cDNA 1700102J08 gene unknown 100210 Mm.274001 NM_133884 ENSMUSG00000028848 Gpn2 AI838661|Atpbd1b|R74630 - 4|4 D2.3 GPN-loop GTPase 2 protein-coding 109279927 LOC109279927 Mm196 - - VISTA enhancer mm196 biological-region 245240 Mm.452996 NM_173434 ENSMUSG00000069892 9930111J21Rik2 9930111J21Rik|Irgb5 - 11|11 B1.2 RIKEN cDNA 9930111J21 gene 2 protein-coding 105244491 Gm37116 - - 3|3 predicted gene, 37116 protein-coding 108563 Iapls1-37 - - - intracisternal A particle, lymphocyte specific 1-37 other 102636421 Gm21740 - - Y|Y predicted gene, 21740 protein-coding 105242858 XR_880137 Gm38951 - - 11 D|11 predicted gene, 38951 ncRNA 68243 Mm.158191 NM_026634 ENSMUSG00000032671 A930018P22Rik - - 2|2 E2 RIKEN cDNA A930018P22 gene protein-coding 100504710 Mm.486515 NM_001201389 ENSMUSG00000079495 Nat8f6 Gm11128 - 6 C3|6 37.48 cM N-acetyltransferase 8 (GCN5-related) family member 6 protein-coding 102465114 NR_105743 ENSMUSG00000105118 Gm38437 Mir3084-2|mmu-mir-3084-2 - 19|19 D3 predicted gene, 38437 ncRNA 61948 D6Mit328 - - 6 52.62 cM DNA Segment, Chr 6, Massachusetts Institute of Technology 328 unknown 111690 Iapt9 - - - intracisternal A particle, tumor specific 9 other 77920 Mm.197051 NR_045073 ENSMUSG00000086363 A330102I10Rik - - 13|13 A3.1 RIKEN cDNA A330102I10 gene ncRNA 73304 Mm.484041 1700034J04Rik - - 12|12 A1.1 RIKEN cDNA 1700034J04 gene unknown 319405 Mm.246494 NR_040393 ENSMUSG00000097466 D430036J16Rik - - 9|9 E1 RIKEN cDNA D430036J16 gene ncRNA 12716 Mm.252145 NM_009897 ENSMUSG00000000308 Ckmt1 Mt-CK|ScCKmit|U-MtCK|UbCKmit|mi-CK|mia-CK - 2 E5|2 60.37 cM creatine kinase, mitochondrial 1, ubiquitous protein-coding 233979 Mm.102235 NM_146206 ENSMUSG00000048677 Tpcn2 D830047E22Rik|Gm35086 - 7|7 F5 two pore segment channel 2 protein-coding 108191 Rpl35a-ps1 L35a - - ribosomal protein L35a, pseudogene 1 pseudo 102635031 Gm32470 - - 3|3 predicted gene, 32470 ncRNA 723849 NR_029655 ENSMUSG00000065492 Mir34b Mirn34b|mir-34b|mmu-mir-34b - 9|9 A5.3 microRNA 34b ncRNA 667626 Trav10n EG667626|Gm8736 - 14|14 C2 T cell receptor alpha variable 10N other 258789 Mm.389298 NM_146793 ENSMUSG00000075062 Olfr1271 MOR227-5 - 2|2 E1 olfactory receptor 1271 protein-coding 102638268 Mm.246105 XR_001780974 ENSMUSG00000051054 1700014D04Rik - - 13|13 B2 RIKEN cDNA 1700014D04 gene protein-coding 114535 Bbaa1 Bb1 - 4 43.3 cM B.burgdorferi-associated arthritis 1 unknown 140765 Mm.214638 NM_080727 ENSMUSG00000024034 Tmprss3 - - 17|17 A3.3 transmembrane protease, serine 3 protein-coding 105245673 XM_011244827 ENSMUSG00000096869 LOC105245673 - - 14 A1 uncharacterized LOC105245673 protein-coding 67870 Mm.11311 NM_026421 ENSMUSG00000029326 Enoph1 2310057D15Rik|BB183658|C81437 - 5|5 E4 enolase-phosphatase 1 protein-coding 107479 Emv71 - - - endogenous ecotropic MuLV 71 protein-coding 102634115 XR_383658 Gm31776 - - 14 D3|14 predicted gene, 31776 ncRNA 63958 Mm.415260 NM_022022 ENSMUSG00000028960 Ube4b 4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684 - 4 E2|4 79.08 cM ubiquitination factor E4B protein-coding 100043902 Mm.150838 NR_015385 ENSMUSG00000093460 Six3os1 D17Mgi26|E130112H22Rik|Rncr1|Six3os - 17|17 E4 SIX homeobox 3, opposite strand 1 ncRNA 114722 Skull14 L10|QTL-S10.1 - 10 34.83 cM skull morphology 14 unknown 61848 D1Mit410 - - 1 10.98 cM DNA segment, Chr 1, Massachusetts Institute of Technology 410 unknown 667666 Mm.459230 NM_001177545 ENSMUSG00000066007 Zfp600 Gm13164 - 4 E1|4 zinc finger protein 600 protein-coding 108168923 XM_017320469 Gm46840 - - 4 A1|4 predicted gene, 46840 protein-coding 328309 Mm.174191 NM_183205 ENSMUSG00000042857 Gm9776 A530089L17 - 13 C3|13 predicted gene 9776 ncRNA 105244318 XR_866795 Gm39952 - - 2 G1|2 predicted gene, 39952 ncRNA 52822 Mm.270469 NM_027530 ENSMUSG00000029291 Rufy3 2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx - 5 E1|5 43.77 cM RUN and FYVE domain containing 3 protein-coding 102638385 Gm34964 - - 7|7 predicted gene, 34964 ncRNA 105246558 XR_877808 Gm41832 - - 19 C1|19 predicted gene, 41832 ncRNA 434440 Mm.450846 NM_001008428 ENSMUSG00000061701 Fbxw20 Fbxw12 - 9|9 F2 F-box and WD-40 domain protein 20 protein-coding 69519 Mm.272517 NM_027100 ENSMUSG00000032417 Rwdd2a 1700030C20Rik|AI848608|Rwdd2 - 9|9 E3.1 RWD domain containing 2A protein-coding 110120522 LOC110120522 - - - VISTA enhancer mm1188 biological-region 13649 Mm.8534 NM_007912 ENSMUSG00000020122 Egfr 9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2 - 11 A2|11 9.41 cM epidermal growth factor receptor protein-coding 629849 Ighv8-2 EG629849|Gm7010 - 12|12 F2 immunoglobulin heavy variable V8-2 other 208760 Mm.235537 NM_177587 ENSMUSG00000045091 Aqp12 AB084104|mAQP12 - 1|1 D aquaporin 12 protein-coding 102631550 XR_386289 Gm29860 - - 18 E1|18 predicted gene, 29860 ncRNA 14017 Mm.439665 NM_010161 ENSMUSG00000078771 Evi2a AW491894|Evi-2|Evi2 - 11 B5|11 46.81 cM ecotropic viral integration site 2a protein-coding 102640215 XR_375355 Gm36337 - - 2 H3|2 predicted gene, 36337 ncRNA 338351 Mm.116704 NM_001081956 ENSMUSG00000059708 Akap17b AA407619|AKAP-17B|B230333C21Rik|C230056F04Rik|PRKA17B|Sfrs17b|Srsf17b|Talia - X|X A3.3 A kinase (PRKA) anchor protein 17B protein-coding 493017 Smdq2 - - 2 56.65 cM segregation of mitochondrial DNA QTL 2 unknown 102631845 Mm.417672 XR_391617 Gm30075 - - 7 D1|7 predicted gene, 30075 ncRNA 641104 Gm7318 EG641104 - 15|15 E1 transmembrane emp24 domain trafficking protein 2 pseudogene pseudo 258298 Mm.377420 NM_146301 ENSMUSG00000096708 Olfr1475 MOR202-36 - 19|19 A olfactory receptor 1475 protein-coding 19566 Rb(5.14)21Lub Rb21Lub - - Robertsonian translocation, Chr 5 and 14, Lubeck 21 other 68845 Mm.181689 NM_029406 ENSMUSG00000003423 Pih1d1 1110061L23Rik|4933413A04Rik|Nop17 - 7|7 B3 PIH1 domain containing 1 protein-coding 259019 Mm.377791 NM_147017 ENSMUSG00000075198 Olfr1045 MOR185-2 - 2|2 D olfactory receptor 1045 protein-coding 100910 Mm.140672 NM_133913 ENSMUSG00000038181 Chpf2 2010209O12Rik|AW060945|Gm42230|mKIAA1402|mir-671 - 5|5 A3 chondroitin polymerizing factor 2 protein-coding 23989 Mm.246493 NM_011869 ENSMUSG00000017210 Med24 911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100 - 11 D|11 62.46 cM mediator complex subunit 24 protein-coding 64251 Snord116l8 Gm26223|Pwcr1l8 - - small nucleolar RNA, C/D box 116-like 8 snoRNA 100035734 Obq18 - - 9 71.32 cM obesity QTL 18 unknown 319174 Hist1h2aj H2a-291b - 13|13 A3.1 histone cluster 1, H2aj pseudo 109636 Pre2 Pre-2|Pre-4 - - prealbumin 2 protein-coding 105423 AA517116 - - - expressed sequence AA517116 unknown 100034834 Psl3 - - 1 97.3 cM promotion susceptibility QTL 3 unknown 630146 Mm.190915 NM_001099332 ENSMUSG00000086564 Cd101 EWI-101|Gm1016|Gm734|Igsf2 - 3|3 F2.2 CD101 antigen protein-coding 637550 Gm7208 EG637550 - 8 D3|8 carboxylesterase 2A pseudogene pseudo 105242475 LOC105242475 - - - mucosal pentraxin protein-coding 70456 Mm.195625 NM_027430 ENSMUSG00000026568 Mpc2 0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43 - 1|1 H2.2 mitochondrial pyruvate carrier 2 protein-coding 100125852 Ltsw2 Ltw2 - - low testis weight 2 unknown 70382 Mm.276299 NM_183285 ENSMUSG00000016940 Kctd2 2310012I15Rik - 11|11 E2 potassium channel tetramerisation domain containing 2 protein-coding 105246506 Mm.392326 NR_131039 LOC105246506 - - 18 E3 uncharacterized LOC105246506 ncRNA 111885 Iap5ra5 - - - intracisternal A-type particle, U5 region, SINE repeat a-5 other 229883 Gm4863 EG229883 - 3|3 H1 DiGeorge syndrome critical region gene 14 pseudogene pseudo 105246655 XR_878362 Gm41913 - - 1 D|1 predicted gene, 41913 ncRNA 73833 Mm.260890 NM_028661 ENSMUSG00000030590 Fam98c 1110006G06Rik|AI836081|AV026483|B230110F21Rik - 7|7 B1 family with sequence similarity 98, member C protein-coding 606520 Gm6055 EG606520|Map1lc3-ps2 - 14|14 C1 microtubule-associated protein 1 light chain 3 pseudogene 2 pseudo 102635165 XR_374362 LOC102635165 - - 2 C1.1 uncharacterized LOC102635165 ncRNA 260305 Mm.302496 NM_153424 ENSMUSG00000039577 Nphp4 4930564O18Rik|nmf192 - 4|4 E2 nephronophthisis 4 (juvenile) homolog (human) protein-coding 26417 Mm.8385 NM_011952 ENSMUSG00000063065 Mapk3 Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk - 7 F3|7 69.25 cM mitogen-activated protein kinase 3 protein-coding 110030 Msmr2 - - - MSM lymphoma resistance 2 protein-coding 102632698 XR_390829 Gm30701 - - 4 D3|4 predicted gene, 30701 ncRNA 73985 Mm.399211 NR_125720 ENSMUSG00000097738 4930445N18Rik 3010027C24Rik - 18|18 E3 RIKEN cDNA 4930445N18 gene ncRNA 380977 Mm.399924 NR_045326 ENSMUSG00000097915 A330009N23Rik - - 15|15 F1 RIKEN cDNA A330009N23 gene ncRNA 100384874 Gm17824 - - 5 B3|5 26.02 cM ribosomal protein L7A pseudogene pseudo 66763 Mm.109093 NM_025751 ENSMUSG00000021718 4933425L06Rik - - 13|13 D1 RIKEN cDNA 4933425L06 gene protein-coding 102636704 XR_374564 Gm33702 - - 2 C1.3|2 predicted gene, 33702 ncRNA 105245803 XR_874769 Gm41193 - - 14 D2|14 predicted gene, 41193 ncRNA 109851611 LOC109851611 - - - DRG (dorsal root ganglion) regulatory region upstream of Runx3 biological-region 100417115 Gm13930 - - 2|2 E3 H2A histone family, member Z pseudogene pseudo 61423 D5Mit222 - - 5 81.53 cM DNA segment, Chr 5, Massachusetts Institute of Technology 222 unknown 246086 Mm.250572 NM_139226 ENSMUSG00000045518 Onecut3 OC-3|Oc3 - 10|10 C1 one cut domain, family member 3 protein-coding 66144 Mm.371614 NM_025381 ENSMUSG00000004285 Atp6v1f 1110004G16Rik - 6|6 A3.3 ATPase, H+ transporting, lysosomal V1 subunit F protein-coding 52595 D15Ertd430e - - 15 57.18 cM DNA segment, Chr 15, ERATO Doi 430, expressed unknown 102634900 XR_387528 LOC102634900 - - 3 A1 uncharacterized LOC102634900 ncRNA 735280 NR_030416 ENSMUSG00000076275 Mir675 Mirn675|mir-675|mmu-mir-675 - 7 F5|7 microRNA 675 ncRNA 100418252 Gm20957 - - 15|15 A1 proteasome (prosome, macropain) subunit, alpha type 2 pseudogene pseudo 239528 Mm.23095 NM_153178 ENSMUSG00000036698 Ago2 1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215 - 15|15 D3 argonaute RISC catalytic subunit 2 protein-coding 225283 Mm.28427 NM_144861 ENSMUSG00000040446 Rprd1a C77387|mKIAA4077 - 18|18 A2 regulation of nuclear pre-mRNA domain containing 1A protein-coding 547349 Mm.439675 NM_001025208 LOC547349 - - 17|17 B1 MHC class I family member protein-coding 627342 Gm6746 EG627342 - 15|15 E3 mitochondrial ribosomal protein L30 pseudogene pseudo 100036745 Fbtq8 - - - femoral bone trait QTL 8 unknown 735261 NR_030455 ENSMUSG00000105333 Mir684-2 Mirn684-2 - 4 A1|4 microRNA 684-2 ncRNA 61968 D8Mit302 - - 8 35.65 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 302 unknown 102465173 NR_105758 ENSMUSG00000098588 Mir6340 Gm27909|mmu-mir-6340 - 2|2 H4 microRNA 6340 ncRNA 667456 Gm8641 EG667456 - 9|9 E3.3 membrane-associated ring finger (C3HC4) 5 pseudogene pseudo 71085 Mm.21646 NM_027667 ENSMUSG00000025154 Arhgap19 4933411B03Rik|AI120128|AW546831|mFLJ00368 - 19|19 C3 Rho GTPase activating protein 19 protein-coding 230857 Mm.401062 NM_199307 ENSMUSG00000057530 Ece1 AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d - 4|4 D3 endothelin converting enzyme 1 protein-coding 102639432 Gm35747 - - 10|10 predicted gene, 35747 ncRNA 52262 D7Ertd312e - - 7 23.3 cM DNA segment, Chr 7, ERATO Doi 312, expressed unknown 100415914 Mm.261765 NR_040674 ENSMUSG00000087070 Gm12505 - - 4 B3|4 predicted gene 12505 ncRNA 102637183 XR_383389 Gm34060 - - 14 C1|14 predicted gene, 34060 ncRNA 100418287 Gm19119 - - 13|13 B3 upstream binding transcription factor, RNA polymerase I pseudogene pseudo 100502736 Mm.445354 NM_001270489 ENSMUSG00000092216 Gm19345 - - 7 A3|7 9.95 cM predicted gene, 19345 protein-coding 102098 Mm.170461 NM_133962 ENSMUSG00000004568 Arhgef18 AI467246|D030053O22Rik - 8|8 A1.1 rho/rac guanine nucleotide exchange factor (GEF) 18 protein-coding 259002 Mm.379447 NM_147000 ENSMUSG00000049362 Olfr173 MOR184-3 - 16|16 C1.2 olfactory receptor 173 protein-coding 71693 Mm.30724 NM_027866 ENSMUSG00000036655 Colec11 CL-K1 - 12|12 A2 collectin sub-family member 11 protein-coding 11840 Mm.371546 NM_007476 ENSMUSG00000048076 Arf1 - - 11|11 B1.3 ADP-ribosylation factor 1 protein-coding 100526796 Mm.384135 NR_037588 Cahm B930003M22Rik - 17 A1|17 colon adenocarcinoma hypermethylated RNA ncRNA 100417280 Gm15238 - - X|X F5 BTB (POZ) domain containing 10 pseudogene pseudo 15193 Mm.12966 NM_008233 ENSMUSG00000002833 Hdgfl2 HRP-2|Hdgfrp2 - 17|17 D HDGF like 2 protein-coding 54377 Mm.103724 NM_019431 ENSMUSG00000020723 Cacng4 AI413107|AW491861 - 11|11 E1 calcium channel, voltage-dependent, gamma subunit 4 protein-coding 85144 D5Mit304 - - 5 37.16 cM DNA segment, Chr 5, Massachusetts Institute of Technology 304 unknown 100043896 Gm14246 - - 2|2 H2 predicted gene 14246 protein-coding 100526521 NR_037245 ENSMUSG00000104890 Mir3084-1 Mir3084|mmu-mir-3084|mmu-mir-3084-1 - 19 B|19 19.87 cM microRNA 3084-1 ncRNA 434540 Mm.479863 NM_054058 ENSMUSG00000063305 Psg20 Cea7|EG434540 - 7|7 A3 pregnancy-specific glycoprotein 20 protein-coding 112299 Tlsr2 - - - thymic lymphoma suppressor region 2 unknown 666414 Gm8089 EG666414 - 1|1 E2.1 predicted gene 8089 pseudo 62239 D17Mit67 - - 17 24.91 cM DNA segment, Chr 17, Massachusetts Institute of Technology 67 unknown 105246376 XR_877198 Gm41672 - - 18 A1|18 predicted gene, 41672 ncRNA 77166 Mm.159859 NM_029873 ENSMUSG00000021600 8030423J24Rik - - 13|13 C1 RIKEN cDNA 8030423J24 gene protein-coding 17381 Mm.2055 NM_008605 ENSMUSG00000049723 Mmp12 AV378681|MME|Mmel - 9 A1|9 2.46 cM matrix metallopeptidase 12 protein-coding 100417440 Gm14278 - - 2|2 H1 N-myc downstream regulated gene 3 pseudogene pseudo 50785 Mm.213566 NM_015818 ENSMUSG00000045216 Hs6st1 6Ost1 - 1|1 B heparan sulfate 6-O-sulfotransferase 1 protein-coding 100417739 Gm18796 - - Y|Y A1 ubiquitin-activating enzyme E1, Chr Y 1 pseudogene pseudo 105246663 XR_878401 Gm41918 - - 1 D|1 predicted gene, 41918 ncRNA 669389 Gm9456 - - 18 E3|18 predicted gene 9456 unknown 105243563 XR_871333 Gm39452 - - 9 F3|9 predicted gene, 39452 ncRNA 29820 Mm.281356 NM_013869 ENSMUSG00000060548 Tnfrsf19 AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy - 14|14 D1 tumor necrosis factor receptor superfamily, member 19 protein-coding 258662 Mm.377625 NM_146420 ENSMUSG00000094692 Olfr738 MOR106-3 - 14|14 C1 olfactory receptor 738 protein-coding 98388 Mm.260054 NM_145142 ENSMUSG00000026080 Chst10 AI507003|AU041319|Hnk-1st|ST - 1|1 B carbohydrate sulfotransferase 10 protein-coding 105244873 XR_869483 Gm40404 - - 6 F3|6 predicted gene, 40404 ncRNA 108167718 XR_001779358 Gm46151 - - 9 F1|9 predicted gene, 46151 ncRNA 26886 Mm.273502 NM_021886 ENSMUSG00000045273 Cenph 1700021I11Rik|2410018A12Rik|2610042E16Rik|2810046K12Rik|AU044255|CENP-H|ENP - 13 53.23 cM|13 D1 centromere protein H protein-coding 102634545 XR_373528 Gm32099 - - 1 C4|1 predicted gene, 32099 ncRNA 62913 D10Mit197 - - 10 35.0 cM DNA segment, Chr 10, Massachusetts Institute of Technology 197 unknown 13592 Mm.319947 NM_010095 ENSMUSG00000022053 Ebf2 D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3 - 14|14 D1 early B cell factor 2 protein-coding 109812 H44 H-44 - - histocompatibility 44 protein-coding 259054 Mm.377811 NM_147052 ENSMUSG00000051362 Olfr589 MOR32-3 - 7|7 E3 olfactory receptor 589 protein-coding 105243455 XR_870919 Gm39371 - - 9 D|9 predicted gene, 39371 ncRNA 108169052 LOC108169052 - - 5 E1 rho GTPase-activating protein 11A pseudogene pseudo 21004 T(1;13)1Wa T1Wa - - reciprocal translocation, Chr 1 and 13, Wageningen 1 other 100417794 Gm18831 - - 7|7 B3 topoisomerase (DNA) II binding protein 1 pseudogene pseudo 103335 AU015253 - - - expressed sequence AU015253 protein-coding 227638 Mm.116769 NM_153559 ENSMUSG00000036327 Qsox2 BC030934|Qscn6l1|Soxn - 2|2 A3 quiescin Q6 sulfhydryl oxidase 2 protein-coding 105242825 Gm38929 - - 6|6 predicted gene, 38929 ncRNA 102465564 NR_105900 ENSMUSG00000098955 Mir6935 Gm27344|mmu-mir-6935 - 11|11 E2 microRNA 6935 ncRNA 15561 Mm.4831 NM_013561 ENSMUSG00000032269 Htr3a 5-HT3 - 9|9 A5.3 5-hydroxytryptamine (serotonin) receptor 3A protein-coding 62221 D16Mit84 - - 16 29.53 cM DNA segment, Chr 16, Massachusetts Institute of Technology 84 unknown 407791 Mm.234181 BC049739 - - - cDNA sequence BC049739 protein-coding 628768 Gm6913 EG628768 - 14|14 D1 predicted gene 6913 pseudo 108167958 Gm46316 - - 12 A1.3|12 40S ribosomal protein S29 pseudogene pseudo 105291 AU022445 - - - expressed sequence AU022445 unknown 100862233 Gm21577 - - Y|Y predicted gene, 21577 pseudo 27355 Mm.269699 NM_013753 ENSMUSG00000020092 Pald1 MMPAL|Pald|mKIAA1274 - 10|10 B4 phosphatase domain containing, paladin 1 protein-coding 105661730 Mm.137893 NR_131249 ENSMUSG00000099906 Lincmd1 Linc-md1 - 1 A4|1 long intergenic non-protein coding RNA of muscle differentiation 1 ncRNA 19664 Mm.209292 NM_009035 ENSMUSG00000039191 Rbpj AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh - 5 C1|5 29.37 cM recombination signal binding protein for immunoglobulin kappa J region protein-coding 102634662 XR_378955 Gm32194 - - 8 B1.1|8 predicted gene, 32194 ncRNA 102465543 NR_105866 ENSMUSG00000098997 Mir6901 Gm27732|mmu-mir-6901 - 1|1 D microRNA 6901 ncRNA 102642619 LOC102642619 - - - peroxiredoxin-6 protein-coding 114174 Etohcta8 - - 9 47.35 cM ethanol conditioned taste aversion 8 unknown 110341 Tel13q TD-2|TD-3 - - telomeric sequence, Chr 13, q arm protein-coding 225358 Mm.226899 NM_146084 ENSMUSG00000036501 Fam13b 2610024E20Rik|AW060714|AW546153 - 18|18 B1 family with sequence similarity 13, member B protein-coding 109433676 LOC109433676 - - - Bmp4 enhancer ECR2 biological-region 105675 Mm.41656 NM_134084 ENSMUSG00000021868 Ppif AW457192|CyP-D|CyP-F|CypD|PPIase - 14|14 A3 peptidylprolyl isomerase F (cyclophilin F) protein-coding 74038 Mm.171304 NR_130958 ENSMUSG00000085208 Brip1os 4632419I22Rik - 11|11 C BRCA1 interacting protein C-terminal helicase 1, opposite strand ncRNA 52666 Mm.272230 NM_028027 ENSMUSG00000019467 Arhgef25 2410008H17Rik|D10Ertd610e|GEFT - 10 D3|10 74.5 cM Rho guanine nucleotide exchange factor (GEF) 25 protein-coding 70059 Mm.207605 NM_027299 ENSMUSG00000021263 Degs2 2210008A03Rik|AI852933|DES2 - 12|12 F1 delta(4)-desaturase, sphingolipid 2 protein-coding 320105 Mm.440922 D030036P13Rik - - X|X RIKEN cDNA D030036P13 gene protein-coding 100038545 Mm.388494 NR_040751 ENSMUSG00000104015 Gm10745 - - 3 A1|3 predicted gene 10745 ncRNA 100535 Mm.247620 NM_133893 ENSMUSG00000032623 Oas1d AA536864|C85127|oasl8 - 5 F|5 60.87 cM 2'-5' oligoadenylate synthetase 1D protein-coding 14412 Mm.258596 NM_144512 ENSMUSG00000030108 Slc6a13 GAT3|Gabt3|Gat2 - 6|6 F1 solute carrier family 6 (neurotransmitter transporter, GABA), member 13 protein-coding 665180 Mm.349066 NM_001101507 ENSMUSG00000079598 Clec2l AI414054|AW122724|Gm1064 - 6|6 B1 C-type lectin domain family 2, member L protein-coding 102637763 XR_376571 LOC102637763 - - 4 D1 uncharacterized LOC102637763 ncRNA 385336 Gm5384 EG385336 - X|X A1.3 predicted gene 5384 pseudo 383994 Gm11864 - - 4|4 A2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene pseudo 100502704 Gm19331 - - 12|12 62.55 cM predicted gene, 19331 ncRNA 100503142 Mm.359204 NR_155430 B230303A05Rik B230303A05|EG328191 - 13|13 A1 U1 small nuclear ribonucleoprotein 1C pseudogene pseudo 670708 Gm9499 - - 1 D|1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 107792 Tel6p - - - telomeric sequence, Chr 6, centromere end protein-coding 76524 Mm.283636 NM_001033175 ENSMUSG00000032245 Cln6 1810065L06Rik|AW743417|D9Bwg1455e|nclf - 9 B|9 33.89 cM ceroid-lipofuscinosis, neuronal 6 protein-coding 77995 E130102C15Rik - - X|X RIKEN cDNA E130102C15 gene protein-coding 102632159 XR_378803 Gm30306 - - 8 A2|8 predicted gene, 30306 ncRNA 240063 Mm.30675 NM_183177 ENSMUSG00000055202 Zfp811 BC052046 - 17|17 B1 zinc finger protein 811 protein-coding 22768 Mm.411381 NM_009571 ENSMUSG00000000103 Zfy2 Zfy-2 - Y|Y A1 zinc finger protein 2, Y-linked protein-coding 100416883 Gm18301 - - 1|1 C1.1 transmembrane protein 209 pseudogene pseudo 433406 Mm.389003 NR_002688 Gm13363 - - 2|2 A3 predicted gene 13363 pseudo 102637127 XR_381920 Gm34017 - - 12 F1|12 predicted gene, 34017 ncRNA 100126787 Ity2a - - - immunity to S. typhimurium 2a unknown 112427 Lrnx4 - - - learning contextual 4 unknown 102635863 LOC102635863 - - 13 A3.3 serpin B9-like pseudo 100036535 Gm9913 - - - predicted gene 9913 unknown 102638596 XR_379283 Gm35123 - - 9 A5.1|9 predicted gene, 35123 ncRNA 102633145 XR_001778985 Gm31047 - - 1 C3|1 predicted gene, 31047 ncRNA 170676 Mm.320575 NM_130877 ENSMUSG00000092035 Peg10 AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2 - 6 A1|6 1.81 cM paternally expressed 10 protein-coding 107291 AU021773 - - - expressed sequence AU021773 unknown 85221 D15Mit163 - - 15 10.84 cM DNA segment, Chr 15, Massachusetts Institute of Technology 163 unknown 62551 D11Mit209 - - 11 40.59 cM DNA segment, Chr 11, Massachusetts Institute of Technology 209 unknown 100113368 Rosq1 - - 7 25.61 cM reactive oxygen species QTL 1 unknown 105246186 XR_876357 LOC105246186 - - 17 A1 uncharacterized LOC105246186 ncRNA 224023 Mm.282807 NM_145479 ENSMUSG00000022750 Klhl22 2610318I18Rik|Kelchl - 16 A3|16 11.01 cM kelch-like 22 protein-coding 60504 Mm.155643 NM_021887 ENSMUSG00000030745 Il21r NILR - 7|7 F3 interleukin 21 receptor protein-coding 102636115 XR_388561 Gm33277 - - 11 A4|11 predicted gene, 33277 ncRNA 226777 Mm.169542 NM_178692 ENSMUSG00000039349 C130074G19Rik - - 1|1 H5 RIKEN cDNA C130074G19 gene protein-coding 77703 Mm.99596 9230106L01Rik - - 16|16 RIKEN cDNA 9230106L01 gene protein-coding 100417474 Gm16102 - - 1|1 C1.1 voltage-dependent anion channel 1 pseudogene pseudo 18985 Mm.897 NM_011136 ENSMUSG00000032053 Pou2af1 BOB.1|Bob-1|Bob1|OBF-1|OBF.1|OCA-B|OCAB - 9|9 A5.3 POU domain, class 2, associating factor 1 protein-coding 99499 AA511261 - - - expressed sequence AA511261 unknown 102641609 XR_877225 Gm38565 - - 18 A2|18 predicted gene, 38565 ncRNA 52341 D4Ertd571e - - - DNA segment, Chr 4, ERATO Doi 571, expressed unknown 80751 Mm.388529 NM_030564 ENSMUSG00000029474 Rnf34 AW061037|AW536122|BC004042|C88279|RIFF - 5|5 F ring finger protein 34 protein-coding 403172 Mm.84518 NM_207276 ENSMUSG00000056544 Defb21 4930525K10Rik|Gm121 - 2|2 H1 defensin beta 21 protein-coding 56307 Mm.289329 NM_019648 ENSMUSG00000036112 Metap2 4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2 - 10|10 C2 methionine aminopeptidase 2 protein-coding 102637560 XR_384301 Gm34337 - - 15 E2|15 predicted gene, 34337 ncRNA 100038559 Gm10673 - - - predicted gene 10673 protein-coding 75896 Mm.417808 4930587A21Rik - - 1|1 RIKEN cDNA 4930587A21 gene protein-coding 19571 Rb(5.15)15Rma Rb15Rma - - Robertsonian translocation, Chr 5 and 15, Universita di Roma 15 other 56880 D5Kng3 - - - DNA segment, Chr 5, Kingsley 3 unknown 73523 Mm.23509 NM_028526 ENSMUSG00000022085 Pebp4 PEBP-4 - 14|14 D2 phosphatidylethanolamine binding protein 4 protein-coding 102632404 Mm.383181 XR_391416 ENSMUSG00000109491 Gm15396 - - 7 B3|7 28.84 cM predicted gene 15396 ncRNA 102636993 XR_389366 Gm33911 - - 5 E3|5 predicted gene, 33911 ncRNA 114697 Embl1 - - - embryonic lethal 1 unknown 105246951 XR_880509 Gm42144 - - 5 E5|5 predicted gene, 42144 ncRNA 381590 Mm.331698 NM_198663 ENSMUSG00000038330 C87499 - - 4|4 C4 expressed sequence C87499 protein-coding 20427 shmy - - - shimmy unknown 319697 Mm.447081 E430016L07Rik - - 19|19 RIKEN cDNA E430016L07 gene protein-coding 319908 D030005H02Rik - - 8|8 RIKEN cDNA D030005H02 gene protein-coding 53763 D2H11S16 D11S16h - - DNA segment, Chr 2, human D11S16 unknown 102634581 XM_017318884 LOC102634581 - - - nuclear body protein SP140-like protein protein-coding 102308570 Mm.27503 NM_001286103 ENSMUSG00000096740 Lbhd1 Gm21743 - 19 A|19 LBH domain containing 1 protein-coding 67998 Mm.33881 NM_026501 ENSMUSG00000017802 Retreg3 1300010M03Rik|4933404C01Rik|AI551748|Fam134c - 11|11 D reticulophagy regulator family member 3 protein-coding 102632020 XR_381855 Gm30198 - - 12 E|12 predicted gene, 30198 ncRNA 105245371 Gm40837 - - 12|12 predicted gene, 40837 ncRNA 50530 Mm.41931 NM_015776 ENSMUSG00000030116 Mfap5 MAGP-2|MFAP-5 - 6|6 F1 microfibrillar associated protein 5 protein-coding 102467479 n-TNgtt13 n-Tn13 - 3 F2.1|3 nuclear encoded tRNA asparagine 13 (anticodon GTT) tRNA 56530 Mm.44220 NM_019953 ENSMUSG00000025381 Cnpy2 5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9 - 10 D3|10 76.52 cM canopy FGF signaling regulator 2 protein-coding 97362 C77798 - - - expressed sequence C77798 unknown 102636712 XR_376024 Gm33708 - - 3 G1|3 predicted gene, 33708 ncRNA 664967 Vmn1r-ps1 Gm14386 - 2|2 H4 vomeronasal 1 receptor, pseudogene 1 pseudo 102638132 XM_006497581 Gm34768 - - 2 A1|2 predicted gene, 34768 protein-coding 108167754 XR_001779613 Gm46177 - - 1 H6|1 predicted gene, 46177 ncRNA 75017 Mm.60775 NR_126087 ENSMUSG00000110406 4930470O06Rik - - 8|8 B3.1 RIKEN cDNA 4930470O06 gene ncRNA 320736 Mm.187910 NM_178791 ENSMUSG00000050666 Vstm4 E130203B14Rik - 14|14 B V-set and transmembrane domain containing 4 protein-coding 102634572 XR_376882 Gm32119 - - 5 B3|5 predicted gene, 32119 ncRNA 100039068 Gm20798 - - Y|Y predicted gene, 20798 protein-coding 100041336 XM_001476676 ENSMUSG00000091185 Gm3278 - - 14 A1|14 predicted gene 3278 protein-coding 78185 Mm.160055 NR_029473 ENSMUSG00000039545 Flicr 4930524L23Rik|Ppp1r3fos - X|X A1.1 Foxp3 regulating long intergenic noncoding RNA ncRNA 100503651 Gm15354 - - 8|8 33.14 cM predicted gene 15354 ncRNA 100036502 Raml3 - - 4 52.81 cM radiation induced acute myeloid leukemia 3 unknown 102639314 XR_373811 Gm35655 - - 1 H5|1 predicted gene, 35655 ncRNA 106337 Mm.192893 AU022434 - - - expressed sequence AU022434 protein-coding 666019 Gm7892 EG666019 - 6|6 D3 Rho GDP dissociation inhibitor (GDI) alpha pseudogene pseudo 67830 Mm.241604 NM_026395 ENSMUSG00000029048 Rer1 1110060F11Rik|5830454N22Rik|AU043380 - 4|4 E2 retention in endoplasmic reticulum sorting receptor 1 protein-coding 22591 Mm.2806 NM_009531 ENSMUSG00000030094 Xpc - - 6|6 D1 xeroderma pigmentosum, complementation group C protein-coding 19111 Mm.7512 NM_011166 ENSMUSG00000069259 Prl6a1 Ghd10|PLP-B|Prlpb - 13 A3.1|13 12.39 cM prolactin family 6, subfamily a, member 1 protein-coding 108168624 XM_017318832 LOC108168624 - - Y D Y-linked testis-specific protein 1-like protein-coding 109584 Far - - - first arch unknown 546244 Igkv4-61 Gm16895|aq4 - 6|6 C1 immunoglobulin kappa chain variable 4-61 other 27546 D7Zem4 MAR|Rpl23 - - DNA segment, Chr 7, Zemel 4 unknown 100042945 Gm4120 - - 12|12 A1.3 predicted gene 4120 pseudo 16219 In(1)1Lub-p In(1)1Lub|In1Lub - - inversion, Chr 1, Lubeck 1, proximal other 230824 Mm.331972 NM_001013756 ENSMUSG00000037188 Grhl3 AI561912|Get1|Som|Tfcp2l4|ct - 4 D3|4 67.76 cM grainyhead like transcription factor 3 protein-coding 619719 Mm.360537 XM_006500806 6430590A07Rik EG619719 - 3|3 B RIKEN cDNA 6430590A07 gene protein-coding 619863 Gm6105 EG619863 - 12|12 F2 high mobility group box 2 pseudogene pseudo 72149 Mm.403722 NM_028126 ENSMUSG00000069631 Strada 2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik - 11|11 E1 STE20-related kinase adaptor alpha protein-coding 108168271 Gm46540 - - 16 A3|16 28S ribosomal protein S21, mitochondrial pseudogene pseudo 75855 Mm.402080 NR_131034 ENSMUSG00000101636 4930579H20Rik - - 10|10 A4 RIKEN cDNA 4930579H20 gene ncRNA 53798 D2H11S412 D11S412h - - DNA segment, Chr 2, human D11S412 unknown 98256 Mm.27217 NM_133809 ENSMUSG00000039783 Kmo AI046660 - 1|1 H3 kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) protein-coding 17127 Mm.7320 NM_016769 ENSMUSG00000032402 Smad3 AU022421|Madh3 - 9|9 C SMAD family member 3 protein-coding 102634557 Gm16219 - - 10|10 38.64 cM predicted gene 16219 pseudo 67731 Mm.25683 NM_026346 ENSMUSG00000022358 Fbxo32 4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx - 15|15 D1 F-box protein 32 protein-coding 320950 Mm.420078 NR_152128 ENSMUSG00000097842 9330104G04Rik - - 7|7 A2 RIKEN cDNA 9330104G04 gene ncRNA 100039226 Gm16368 EG193330 - 12|12 D2 eukaryotic translation initiation factor 1A pseudogene pseudo 228025 Mm.448232 XR_866412 Gm17250 Gm559 - 2|2 C2 predicted gene, 17250 unknown 360076 D17Jcs88 - - - DNA segment, Chr 17, John C. Schimenti 88 unknown 105246836 Gm42058 - - 19|19 predicted gene, 42058 ncRNA 72003 Mm.317515 NM_028052 ENSMUSG00000056296 Synpr 1500003F20Rik|SPO - 14|14 A1 synaptoporin protein-coding 667313 Gm8569 EG667313 - X|X F3 RELT tumor necrosis factor receptor pseudogene pseudo 100035996 Elda1 - - 11 32.13 cM ethanol induced low dose activation 1 unknown 100861888 Gm21301 - - Y|Y predicted gene, 21301 protein-coding 102641052 Gm13093 - - 4|4 80.96 cM predicted gene 13093 ncRNA 27647 D0Hgu13 - - - DNA segment, Human Genetics Unit 13 unknown 100036084 Lgaq1 - - - late growth adjusted QTL 1 unknown 194292 Mm.300184 NR_024513 Gm5 Gm1812 - 5|5 G3 predicted gene 5 ncRNA 100522 AA516935 - - - expressed sequence AA516935 unknown 243628 Mm.469873 NM_001104639 ENSMUSG00000072780 Vmn2r24 EG243628 - 6|6 F2 vomeronasal 2, receptor 24 protein-coding 105245014 XR_870875 Gm40528 - - 9 C|9 predicted gene, 40528 ncRNA 260411 Desp1 Fst-1 - 8 50.07 cM despair 1 unknown 100045125 XM_011250932 Gm17768 - - 7|7 B3 predicted gene, 17768 protein-coding 546133 XM_011242843 Gm5917 EG546133 - 9|9 B predicted gene 5917 pseudo 116817 Frp2 Frp-2 - 5 68.16 cM free running period 2 unknown 102467294 n-TQctg9 n-Tq9 - 9 C|9 nuclear encoded tRNA glutamine 9 (anticodon CTG) tRNA 71729 Mm.196208 NM_173402 ENSMUSG00000029101 Rgs12 1200016K18Rik|4632412M04Rik|AI481290|E130309H11 - 5 B2|5 17.96 cM regulator of G-protein signaling 12 protein-coding 105244660 XR_868023 Gm40229 - - 4 D1|4 predicted gene, 40229 ncRNA 74411 Mm.441887 NM_028922 ENSMUSG00000040105 Plpp6 4932443D16Rik|Ppapdc2 - 19|19 C1 phospholipid phosphatase 6 protein-coding 100316774 NR_035463 ENSMUSG00000087899 Mir1942 mmu-mir-1942 - 15 D3|15 35.54 cM microRNA 1942 ncRNA 386649 Mm.419479 NM_198326 ENSMUSG00000027455 Nsfl1c Munc-18c|Stxbp3a|p47 - 2|2 G3 NSFL1 (p97) cofactor (p47) protein-coding 13094 Mm.14413 NM_010000 ENSMUSG00000040660 Cyp2b9 Cyp2b - 7 A3|7 14.11 cM cytochrome P450, family 2, subfamily b, polypeptide 9 protein-coding 30914 AI317185 - - - EST AI317185 unknown 269881 Mm.389883 NM_001081292 ENSMUSG00000040390 Map3k10 BC028668|BC046514|MST|Mlk2 - 7|7 A3 mitogen-activated protein kinase kinase kinase 10 protein-coding 14457 Mm.40338 NM_008088 ENSMUSG00000033066 Gas7 AW124766|B230343A10Rik|Gas7-cb - 11|11 B3 growth arrest specific 7 protein-coding 67178 Mm.271056 NM_026015 ENSMUSG00000009076 Zmat5 2610510L01Rik|D11Bwg0572e|D11Bwg1548e - 11 A1|11 2.96 cM zinc finger, matrin type 5 protein-coding 100124493 NR_030542 ENSMUSG00000078024 Mir883b Mirn883b|mir-883b - X A7.1|X microRNA 883b ncRNA 102632795 Gm30775 - - X|X predicted gene, 30775 pseudo 434881 Mm.357614 NM_001037167 ENSMUSG00000072888 Samt2 EG434881|Gm5647 - X|X F3 spermatogenesis associated multipass transmembrane protein 2 protein-coding 105245051 LOC105245051 - - 12 E cytochrome c oxidase subunit 7C, mitochondrial pseudogene pseudo 215387 Mm.29786 NM_144818 ENSMUSG00000034906 Ncaph A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H - 2|2 F1 non-SMC condensin I complex, subunit H protein-coding 629667 Gm6993 EG629667 - 12|12 A2 predicted gene 6993 protein-coding 667353 Gm8590 EG667353 - 16|16 B4 SET domain-containing protein 8 pseudogene pseudo 102632089 XR_379917 Gm30254 - - 9 F3|9 predicted gene, 30254 ncRNA 105242685 XR_869182 Gm38834 - - 6 C1|6 predicted gene, 38834 ncRNA 258900 Mm.223310 NM_146898 ENSMUSG00000075111 Olfr1213 MOR233-7 - 2|2 E1 olfactory receptor 1213 protein-coding 110620 H2-Q11 Qa-11|Qa11 - - histocompatibility 2, Q region locus 11 protein-coding 107818 Myhn3 Myhn-3 - - myosin heavy chain, nonmuscular, type C protein-coding 207965 Mm.102487 NM_001033236 ENSMUSG00000049882 Vcpkmt Gm71|Mettl21d|Mettl221d|VCP-KMT - 12|12 C2 valosin containing protein lysine (K) methyltransferase protein-coding 102635161 LOC102635161 - - 5 A3 macrophage migration inhibitory factor pseudogene pseudo 16304 In(8)14Rk-p In(8)14Rk|In14Rk - - inversion, Chr 8, Roderick 14, proximal other 435614 Gm5697 EG435614 - 1|1 A5 RNA polymerase II associated protein 3 pseudogene pseudo 102545 Mm.35600 NM_133978 ENSMUSG00000032436 Cmtm7 AI481279|Cklfsf7|LNV - 9|9 F3 CKLF-like MARVEL transmembrane domain containing 7 protein-coding 100041155 Cox20-ps Gm15683 - 7 E3|7 COX20 Cox2 chaperone, pseudogene pseudo 111777 Iapls3-7 - - - intracisternal A particle, lymphocyte specific 3-7 other 271374 Gm5063 EG271374 - 16|16 B4 lactate dehydrogenase A pseudogene pseudo 547006 Gm6009 EG547006 - 8|8 A2 predicted gene 6009 pseudo 100038694 Mm.416538 Gm10796 - - - predicted gene 10796 unknown 109660 Mm.2745 NM_023182 ENSMUSG00000031896 Ctrl 0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366 - 8 D3|8 53.06 cM chymotrypsin-like protein-coding 545884 Mm.482064 NM_001185040 Gm5885 EG545884 - 6 G1|6 predicted gene 5885 protein-coding 105245170 XR_873109 Gm40660 - - 13 A1|13 predicted gene, 40660 ncRNA 111979 El4 - - 9 26.83 cM epilepsy 4 unknown 78454 Mm.118809 9530077C14Rik - - 4|4 D3 RIKEN cDNA 9530077C14 gene protein-coding 108169065 XR_001784945 Gm46920 - - 5 F|5 predicted gene, 46920 ncRNA 242502 Mm.331671 NM_001081644 ENSMUSG00000095341 Gm428 - - 4|4 C3 predicted gene 428 protein-coding 75319 Mm.401991 4930555O08Rik - - 11|11 RIKEN cDNA 4930555O08 gene protein-coding 102636372 XR_001783272 Gm33457 - - 2 B|2 predicted gene, 33457 ncRNA 171541 AF179942 12-14-142 - - DNA sequence AF179942 unknown 23821 Mm.24044 NM_011792 ENSMUSG00000032086 Bace1 ASP2|Bace|C76936 - 9|9 A5.2 beta-site APP cleaving enzyme 1 protein-coding 79233 Mm.350514 NM_024467 ENSMUSG00000046556 Zfp319 AI225750|AI413472|Znf319|mKIAA1388 - 8|8 C5 zinc finger protein 319 protein-coding 102637189 XM_017313097 Gm34066 - - 1 C1.1|1 predicted gene, 34066 protein-coding 668683 Gm9302 EG668683 - 14 E2.3|14 ribosomal protein L10A pseudogene pseudo 100416279 Gm17214 - - 3|3 E1 ribosomal protein L17 pseudogene pseudo 28270 D10Jhu35 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 35 unknown 102465614 NR_105982 ENSMUSG00000106436 Mir7015 mmu-mir-7015 - 4|4 D2.2 microRNA 7015 ncRNA 104932 Mm.274150 NR_102381 AU015791 - - 12 E|12 expressed sequence AU015791 ncRNA 102633766 XR_392579 ENSMUSG00000099496 Gm28365 - - Y E|Y predicted gene 28365 ncRNA 100126087 Swqnd2 - - - spleen weight QTL 2 unknown 53092 232b10D - - - DNA segment, 232b10D unknown 102635466 XR_379794 Gm32797 - - 9 F1|9 predicted gene, 32797 ncRNA 110631 H2-Q15 Q15 - - histocompatibility 2, Q region locus 15 protein-coding 14266 Mm.466576 NM_008032 ENSMUSG00000031189 Aff2 FMR2P|Fmr2|Ox19|Oxh - X|X A7.1-A7.2 AF4/FMR2 family, member 2 protein-coding 12359 Mm.4215 NM_009804 ENSMUSG00000027187 Cat 2210418N07|Cas-1|Cas1|Cs-1 - 2 E2|2 54.43 cM catalase protein-coding 319539 C130031E09Rik - - 5|5 RIKEN cDNA C130031E09 gene protein-coding 102626 Mm.222612 NM_178907 ENSMUSG00000032577 Mapkapk3 3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3 - 9|9 F1 mitogen-activated protein kinase-activated protein kinase 3 protein-coding 668870 Gm9409 EG668870 - 3|3 G3 predicted gene 9409 pseudo 75122 Mm.159433 NM_029172 ENSMUSG00000019815 Zc2hc1b 4930519B02Rik|Fam164b - 10|10 A2 zinc finger, C2HC-type containing 1B protein-coding 20375 Mm.1302 NM_011355 ENSMUSG00000002111 Spi1 Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1 - 2 E1|2 50.44 cM spleen focus forming virus (SFFV) proviral integration oncogene protein-coding 15423 Mm.1351 NM_013553 ENSMUSG00000075394 Hoxc4 Hox-3.5 - 15 F3|15 58.08 cM homeobox C4 protein-coding 100044855 Gm16042 - - 6|6 A1 F-box protein 5 pseudo 100526519 NR_037231 ENSMUSG00000094952 Mir3070b mir-3070-2|mmu-mir-3070-2|mmu-mir-3070b - 12 F1|12 60.38 cM microRNA 3070b ncRNA 320140 B930012P20Rik - - 3|3 RIKEN cDNA B930012P20 gene protein-coding 18263 Mm.34102 NM_013614 ENSMUSG00000011179 Odc1 ODC - 12 A1.1|12 8.11 cM ornithine decarboxylase, structural 1 protein-coding 20679 Mm.323365 NM_011445 ENSMUSG00000051910 Sox6 AI987981|SOX-LZ - 7 F1|7 61.29 cM SRY (sex determining region Y)-box 6 protein-coding 215114 Mm.280805 NM_146001 ENSMUSG00000039959 Hip1 2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113 - 5 G2|5 75.18 cM huntingtin interacting protein 1 protein-coding 667245 Rpl31-ps24 EG667245|Gm8537 - 1|1 C2 ribosomal protein L31, pseudogene 24 pseudo 107003 Mm.395148 NR_040342 A330093E20Rik AU043608 - 18 C|18 RIKEN cDNA A330093E20 gene ncRNA 723956 NR_029552 ENSMUSG00000065512 Mir138-2 Mirn138-2|mir-138-2 - 8|8 C5 microRNA 138-2 ncRNA 102636575 Mm.417291 XR_386887 Gm14862 Gm33602 - X 4.21 cM|X A1.1 predicted gene 14862 ncRNA 102640583 XR_378194 Gm36613 - - 6 G3|6 predicted gene, 36613 ncRNA 18803 Mm.44463 NM_021280 ENSMUSG00000016933 Plcg1 AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1 - 2 H2|2 80.97 cM phospholipase C, gamma 1 protein-coding 280667 Mm.444773 NM_172125 ENSMUSG00000062438 Adam1b Adam1|Ftna - 5|5 F a disintegrin and metallopeptidase domain 1b protein-coding 26912 Mm.237085 NM_013847 ENSMUSG00000006378 Gcat AI526977|Kbl - 15 E1|15 37.7 cM glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase) protein-coding 101994 Mm.289346 NM_181854 ENSMUSG00000047710 Champ1 AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802 - 8 A1.1|8 6.4 cM chromosome alignment maintaining phosphoprotein 1 protein-coding 666973 Gm13176 - - 2|2 A1 protein regulator of cytokinesis 1 pseudogene pseudo 15145 Hc14 Cen14 - - heterochromatin, Chr 14 other 100035212 Imraq2 - - - immune response to AAV2 QTL 2 unknown 109279862 LOC109279862 Mm48 - - VISTA enhancer mm48 biological-region 66557 Mm.46448 NM_025631 ENSMUSG00000027481 Bpifb2 2310034L21Rik|2310069A01Rik|AV089125|Bpil1|LPLUNC2|RYSR - 2|2 H1 BPI fold containing family B, member 2 protein-coding 723901 NR_030264 ENSMUSG00000076140 Mir542 Mirn542|mir-542|mmu-mir-542 - X|X A5 microRNA 542 ncRNA 545562 Mm.462977 NM_001190403 Amy2b Amy-X|Amy2-2|mAmy2-1 - 3 F3|3 49.35 cM amylase 2b protein-coding 74917 Mm.32228 NM_183107 4930474M22Rik - - 17|17 A2 RIKEN cDNA 4930474M22 gene ncRNA 105243769 XR_875528 Gm39558 - - 15 E2|15 predicted gene, 39558 ncRNA 61935 D5Mit374 - - 5 77.98 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 374 unknown 22038 Mm.421956 NM_011636 ENSMUSG00000032369 Plscr1 MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2 - 9|9 E3.3 phospholipid scramblase 1 protein-coding 110028 Iva2 - - - isovaleric acid smelling 2 protein-coding 100034795 Ath20 - - 10 9.75 cM atherosclerosis 20 unknown 433204 Gm5509 EG433204 - 18|18 E3 zinc finger, DHHC domain containing 6 pseudogene pseudo 665386 Gm7614 EG665386 - 13|13 A2 predicted gene 7614 pseudo 100039214 Gm16374 EG432919 - 15|15 A1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100034788 Bdln4 - - 9 36.41 cM body length 4 unknown 18256 Mm.41776 NM_010953 ENSMUSG00000015001 Oc90 Ocn-95|PLA2L|Pla2ll|oc95 - 15 D1|15 29.16 cM otoconin 90 protein-coding 105247017 Gm42200 - - 3|3 predicted gene, 42200 ncRNA 67542 Mm.249548 NM_026225 ENSMUSG00000027742 Cog6 4933405E16Rik|AU018618|mKIAA1134 - 3|3 C component of oligomeric golgi complex 6 protein-coding 100303645 Mm.441426 NR_028425 D7Ertd143e - - 7 1.88 cM|7 A1 DNA segment, Chr 7, ERATO Doi 143, expressed ncRNA 16267 In(2)3Dn-d In(2)3Dn|In3Dn - - inversion, Chr 2, Davisson 3, distal other 96899 C80154 - - - expressed sequence C80154 unknown 109280014 LOC109280014 Mm109 - - VISTA enhancer mm109 biological-region 17760 Mm.154087 NM_010837 ENSMUSG00000055407 Map6 2810411E12Rik|Map-6|Mtap6|STOP - 7|7 E1 microtubule-associated protein 6 protein-coding 338367 Mm.151948 NM_177390 ENSMUSG00000035441 Myo1d 9930104H07Rik|AW544947|D11Ertd9e|myosin-1d - 11 B5|11 47.95 cM myosin ID protein-coding 243407 Mm.389758 NM_175524 ENSMUSG00000029917 C130060K24Rik - - 6|6 C1 RIKEN cDNA C130060K24 gene protein-coding 209361 Mm.86343 NM_027748 ENSMUSG00000025782 Taf3 140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140 - 2|2 A1 TATA-box binding protein associated factor 3 protein-coding 193438 Tpi-rs8 Tpi-8 - 13 A3.1|13 11.21 cM triosephosphate isomerase related sequence 8 pseudo 107934 Mm.39945 NM_080437 ENSMUSG00000023473 Celsr3 Adgrc3|Fmi1|flamingo|mKIAA0812 - 9|9 F2 cadherin, EGF LAG seven-pass G-type receptor 3 protein-coding 271457 Mm.329123 NM_025887 ENSMUSG00000017831 Rab5a 2410015H04Rik|AI663973|AU021172|nnyRab5a - 17 C|17 27.82 cM RAB5A, member RAS oncogene family protein-coding 106286 D16Mgi11 AI853701 - - DNA Segment, Chr 16, Mouse Genome Informatics 11 unknown 258335 Mm.377439 NM_146338 ENSMUSG00000046881 Olfr374 MOR130-1 - 8|8 B3.3 olfactory receptor 374 protein-coding 100416333 Gm18046 - - 7|7 A3 ribosomal protein L17 pseudogene pseudo 15549 htr - - - hesitator unknown 101056241 XM_006502571 Gm29808 EG626841|Gm6711 - 3 E3|3 predicted gene, 29808 protein-coding 105245315 XR_872137 Gm40790 - - 10 D2|10 predicted gene, 40790 ncRNA 108168419 XR_001782694 Gm46658 - - 19 A|19 predicted gene, 46658 ncRNA 102638722 XR_377584 ENSMUSG00000107598 Gm35216 - - 6 B2.1|6 predicted gene, 35216 ncRNA 102637006 Gm33921 - - X|X predicted gene, 33921 pseudo 208618 Mm.237935 NM_029895 ENSMUSG00000036617 Etl4 6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt - 2 A3|2 14.27 cM enhancer trap locus 4 protein-coding 112202 Skts9 - - 16 13.8 cM skin tumor susceptibility 9 unknown 105243876 XR_872269 Gm39602 - - 11 A3.1|11 predicted gene, 39602 ncRNA 61054 D6Mit260 - - 6 4.6 cM DNA segment, Chr 6, Massachusetts Institute of Technology 260 unknown 22069 n-TUtca2 Trnau1|Trsp|n-Ts2|tRNA-Sec - 7|7 9.56 cM nuclear encoded tRNA selenocysteine 2 (anticodon TCA) tRNA 245610 Mm.336244 NM_001024141 ENSMUSG00000057000 Nxf3 Gm384 - X F1|X 57.38 cM nuclear RNA export factor 3 protein-coding 104806 Mm.374847 NM_178912 ENSMUSG00000055884 Fancm AI427100|C730036B14Rik|D12Ertd364e - 12 C1|12 27.21 cM Fanconi anemia, complementation group M protein-coding 628422 Mm.469902 NM_001105055 ENSMUSG00000090383 Vmn2r58 EG628422 - 7 B3|7 vomeronasal 2, receptor 58 protein-coding 20843 Mm.290422 NM_021465 ENSMUSG00000025862 Stag2 9230105L23Rik|B230112I07Rik|SA-2|SAP2 - X|X A4 stromal antigen 2 protein-coding 105244636 LOC105244636 - - 12 A1.1 40S ribosomal protein S26-like pseudo 216558 Mm.28877 NM_139297 ENSMUSG00000001891 Ugp2 UDPGP|UGPase - 11 A3.1|11 13.89 cM UDP-glucose pyrophosphorylase 2 protein-coding 112346 Mlviq1 - - 7 88.85 cM murine leukemia virus infection QTL, 1 unknown 319622 Mm.323386 NM_001033380 ENSMUSG00000095115 Itpripl2 C130081G24|E030018N11Rik - 7|7 F1 inositol 1,4,5-triphosphate receptor interacting protein-like 2 protein-coding 102634854 LOC102634854 - - 2 H1 protein transport protein Sec61 subunit gamma pseudogene pseudo 109727 Hst1 Hst-1 - - hybrid sterility 1 protein-coding 108169184 Gm43975 - - 6 F3|6 cyclin-dependent kinase 4 pseudogene pseudo 12921 Mm.1892 NM_007762 ENSMUSG00000018634 Crhr1 CRF1R|CRFR1|Crhr - 11 E1|11 67.77 cM corticotropin releasing hormone receptor 1 protein-coding 102641369 XR_869526 Gm38552 - - 6 G1|6 predicted gene, 38552 ncRNA 108168005 XR_001780621 Gm46354 - - 12 C2|12 retinol-binding protein 1 pseudogene pseudo 62523 D11Mit139 - - 11 29.23 cM DNA segment, Chr 11, Massachusetts Institute of Technology 139 unknown 116904 Mm.475768 NM_054085 ENSMUSG00000038763 Alpk3 AW319487|D330016D04|MAK|Midori|mKIAA1330 - 7|7 D3 alpha-kinase 3 protein-coding 61769 D3Mit280 - - 3 34.38 cM DNA segment, Chr 3, Massachusetts Institute of Technology 280 unknown 100036153 Egq7 - - - early growth QTL 7 unknown 105244222 XR_866516 Gm39869 - - 2 E1|2 predicted gene, 39869 ncRNA 227738 Mm.248037 NM_199302 ENSMUSG00000026792 Lrsam1 - - 2|2 B leucine rich repeat and sterile alpha motif containing 1 protein-coding 620627 Sult2a-ps2 EG620627|Gm15436|Gm6168 - 7|7 A1 sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, pseudogene 2 pseudo 100039137 Gm2060 - - 1 C4|1 predicted gene 2060 pseudo 435772 XM_017320478 Cnbd1 - - 4 A3|4 cyclic nucleotide binding domain containing 1 protein-coding 732522 Gt(pU21)40Imeg Ayu21-40|GtAyu21-40 - - gene trap 40, Institute of Molecular Embryology and Genetics unknown 108342 Mtv50 Mtv-50 - - mammary tumor virus locus 50 other 15040 Mm.439648 NM_010398 ENSMUSG00000067212 H2-T23 37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d - 17 B1|17 18.86 cM histocompatibility 2, T region locus 23 protein-coding 100125254 Trbj1-7 Gm16650 - 6 19.69 cM|6 B1 T cell receptor beta joining 1-7 other 71829 Mm.141452 NM_027942 ENSMUSG00000047619 Ddi1 1700011N24Rik - 9|9 A1 DNA-damage inducible 1 protein-coding 668817 Gm9379 EG668817 - 3|3 G1 high mobility group box 2 pseudogene pseudo 67669 Mm.28679 NM_026304 ENSMUSG00000062797 Hikeshi 0610007P06Rik|1110002N09Rik|l(7)6Rn|l7Rn6 - 7 D3|7 50.4 cM heat shock protein nuclear import factor protein-coding 70337 Mm.24153 NM_027391 ENSMUSG00000019762 Iyd 0610009A07Rik|AI265638|Dehal1 - 10|10 A1 iodotyrosine deiodinase protein-coding 105246076 XR_875933 Gm41424 - - 16 A2|16 predicted gene, 41424 ncRNA 103149 Mm.441195 NM_133995 ENSMUSG00000033427 Upb1 AI195023 - 10|10 C1 ureidopropionase, beta protein-coding 13250 Del(1)42H Del42H - - deletion, Chr 1, Harwell 42 other 102634893 Gm32368 - - Y|Y predicted gene, 32368 pseudo 100467 Mm.381365 AW987390 - - - expressed sequence AW987390 unknown 68157 Mm.273536 NM_026586 6720475J19Rik - - 19|19 A RIKEN cDNA 6720475J19 gene other 105245112 Gm40606 - - 10|10 predicted gene, 40606 ncRNA 102638885 LOC102638885 - - 1 C4 60S ribosomal protein L12 pseudogene pseudo 258610 Mm.377592 NM_146617 ENSMUSG00000055610 Olfr307 MOR219-1 - 7|7 D3 olfactory receptor 307 protein-coding 108167591 XR_001778768 Gm46076 - - 8 A3|8 60S ribosomal protein L27a pseudogene pseudo 100035467 Bw31 Bw25 - - body weight QTL 31 unknown 387204 NR_029724 ENSMUSG00000065432 Mir208a Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208 - 14|14 C2 microRNA 208a ncRNA 15460 Mm.7598 NM_021877 ENSMUSG00000022096 Hr ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino - 14|14 D2 hairless protein-coding 102638145 Gm34779 - - 7 A1|7 predicted gene, 34779 pseudo 102641661 Mm.333682 XR_881900 Gm38569 Gm44880 - 7 A3|7 predicted gene, 38569 ncRNA 105243040 XR_869903 Gm39076 - - 7 F2|7 predicted gene, 39076 ncRNA 623444 Gm14628 EG623444 - X|X A4 predicted gene 14628 protein-coding 105242860 XR_881864 Gm38952 - - 7 A3|7 predicted gene, 38952 ncRNA 228602 Mm.271990 NM_028367 ENSMUSG00000027309 4930402H24Rik 2810487F15Rik|AI413763|C78926 - 2 F1|2 RIKEN cDNA 4930402H24 gene protein-coding 85127 D5Mit130 - - 5 22.11 cM DNA segment, Chr 5, Massachusetts Institute of Technology 130 unknown 73297 Mm.422673 NM_028494 ENSMUSG00000074619 1700034I23Rik - - 3|3 B FUN14 domain containing 2 pseudogene pseudo 675985 Rps6-ps2 EG626259|Gm16406 - 8|8 C3 ribosomal protein S6, pseudogene 2 pseudo 27925 D16Ium40 - - - DNA segment, Chr 16, Indiana University Medical 40 unknown 56356 Mm.275766 NM_019821 ENSMUSG00000011884 Gltp 1110001F24Rik|C76925|C77564 - 5|5 F glycolipid transfer protein protein-coding 64384 Mm.29760 NM_022433 ENSMUSG00000025486 Sirt3 2310003L23Rik|AI848213|Sir2l3 - 7|7 F4-F5 sirtuin 3 protein-coding 269437 Mm.316391 NM_183191 ENSMUSG00000036834 Plch1 BC042549|PLC-eta-1|PLCeta1|Plcl3 - 3|3 E1 phospholipase C, eta 1 protein-coding 13557 Mm.268356 NM_010093 ENSMUSG00000016477 E2f3 E2F3b|E2f3a - 13|13 A3.2 E2F transcription factor 3 protein-coding 259163 Mm.419145 NM_001199840 ENSMUSG00000094673 Olfr1354 EG257869|GA_x5J8B7TPDN2-1058-1265|GA_x6K02T03FR9-4826-3919|MOR139-5|MOR139-7|MOR185-8|Olfr1354-ps1|Olfr233-ps1 - 10|10 C1 olfactory receptor 1354 protein-coding 17252 Mm.291799 NM_021557 ENSMUSG00000066441 Rdh11 2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1 - 12 C3|12 35.51 cM retinol dehydrogenase 11 protein-coding 105244703 XR_868231 Gm40262 - - 5 A1|5 predicted gene, 40262 ncRNA 109208 5930420B01Rik - - 2|2 RIKEN cDNA 5930420B01 gene protein-coding 102635867 XR_377680 Gm33097 - - 6 B3|6 predicted gene, 33097 ncRNA 102640367 Gm21881 - - Y|Y predicted gene, 21881 protein-coding 105841 Mm.322557 NM_001081066 ENSMUSG00000036661 Dennd3 AI447457|E030003N15Rik - 15|15 D3 DENN/MADD domain containing 3 protein-coding 110515 Prdx1-rs3 - - - peroxiredoxin 1, related sequence 3 protein-coding 108581 Iap3rb4 - - - intracisternal A-type particle, U3 region, SINE repeat b-4 other 114808 Bwtq4 - - - body weight QTL 4 unknown 22312 Mm.484664 NM_001104569 ENSMUSG00000056910 Vmn2r107 V2r6|Vmn107 - 17|17 A3.2 vomeronasal 2, receptor 107 protein-coding 105243468 XR_870950 Gm39383 - - 9 E2|9 predicted gene, 39383 ncRNA 16680 Mm.25292 NM_008474 ENSMUSG00000044294 Krt84 AV235125|HRb-1|Krt2-16|Krt2-3 - 15 F2|15 56.9 cM keratin 84 protein-coding 243834 Mm.133086 NM_178732 ENSMUSG00000004500 Zfp324 A930002M05|D430030K24Rik|ZF5128 - 7|7 A1 zinc finger protein 324 protein-coding 100040049 Mm.102235 NR_033626 ENSMUSG00000109305 1810010D01Rik Gm2572 - 7 F5|7 RIKEN cDNA 1810010D01 gene ncRNA 108169171 XR_001785382 Gm46977 - - 6 G1|6 predicted gene, 46977 protein-coding 100035270 Cmn3 - - 16 34.22 cM cardiac modifier of nmd 3 unknown 93710 Mm.247203 NM_033585 ENSMUSG00000103332 Pcdhga2 mKIAA0588 - 18|18 B3 protocadherin gamma subfamily A, 2 protein-coding 114078 Axtofa5 - - - anxiety-open field activity 5 unknown 100417310 Gm18522 - - 17|17 B1 crumbs homolog 1 pseudogene pseudo 71868 Mm.151092 NM_027970 ENSMUSG00000029248 Thegl 1700023E05Rik - 5|5 C3.3 theg spermatid protein like protein-coding 102635231 XR_865555 Gm32622 - - 1 C4|1 predicted gene, 32622 ncRNA 61927 D5Mit357 - - 5 41.45 cM DNA Segment, Chr 5, Massachusetts Institute of Technology 357 unknown 100041653 Mm.399935 Gm3455 - - 6 B2.3|6 predicted gene 3455 unknown 434410 Mm.244196 Gm17749 - - 9|9 C predicted gene, 17749 ncRNA 71111 Mm.32727 NM_027677 ENSMUSG00000026343 Gpr39 4933415E13Rik - 1|1 E2.3-E3 G protein-coupled receptor 39 protein-coding 100416976 Gm18345 - - 5|5 C3.3 sterol O-acyltransferase 1 pseudogene pseudo 51960 Mm.339711 NM_030211 ENSMUSG00000054770 Kctd18 4932411A20Rik|6530404F10Rik - 1|1 C1.3 potassium channel tetramerisation domain containing 18 protein-coding 100458 AW743250 - - - expressed sequence AW743250 unknown 18294 Mm.43612 NM_010957 ENSMUSG00000030271 Ogg1 Mmh - 6 E3|6 52.75 cM 8-oxoguanine DNA-glycosylase 1 protein-coding 62871 D11Mit276 - - 11 40.48 cM DNA segment, Chr 11, Massachusetts Institute of Technology 276 unknown 102635362 XR_001784046 Gm32721 - - 3 H3|3 predicted gene, 32721 ncRNA 16055 Igh-V31 - - - immunoglobulin heavy chain (V31 family) other 62864 D11Mit290 - - 11 70.03 cM DNA segment, Chr 11, Massachusetts Institute of Technology 290 unknown 100124295 Traj57 Gm16768 - 14|14 C2 T cell receptor alpha joining 57 other 546769 XM_621554 ENSMUSG00000080713 Olfr1174-ps MOR174-18|Olfr1174 - 2|2 D olfactory receptor 1174, pseudogene pseudo 105242557 Mm.450596 XR_868670 Gm20635 - - 5 G2|5 82.12 cM predicted gene 20635 ncRNA 74343 Mm.35627 NM_028881 ENSMUSG00000027936 Crtc2 4632407F12Rik|Torc2 - 3|3 F1 CREB regulated transcription coactivator 2 protein-coding 105242655 XR_869082 Gm38810 - - 6 B3|6 predicted gene, 38810 ncRNA 61792 D2Mit423 - - 2 73.57 cM DNA segment, Chr 2, Massachusetts Institute of Technology 423 unknown 432478 Mm.235302 NM_001081688 ENSMUSG00000059406 Tmprss9 Serase-1B - 10|10 C1 transmembrane protease, serine 9 protein-coding 102638761 XR_383716 4930518C04Rik - - 14|14 E2.3 RIKEN cDNA 4930518C04 gene ncRNA 16049 Igh-V B1H12|B4H2|Gal13|IGHV2B|M86 - 12 F2|12 immunoglobulin heavy chain variable region other 100036457 Ascla3 - - 3 72.43 cM atherosclerotic lesion area 3 unknown 109607 Es16 Es-16 - - esterase 16 protein-coding 258874 Mm.377731 NM_146874 Olfr900 GA_x6K02T2PVTD-32071567-32072508|MOR170-13|MOR170-2 - 9|9 A5 olfactory receptor 900 protein-coding 21462 Mm.264651 NM_009341 ENSMUSG00000055602 Tcp10b D17Leh66B|D17Leh66ba|T66B-a|Tcp-10b|Tcp-10bt - 17 8.76 cM|17 A1 t-complex protein 10b protein-coding 100038377 Gm10750 - - - predicted gene 10750 unknown 102631999 Gm30182 - - 8|8 predicted gene, 30182 ncRNA 216177 Mm.482395 NM_001163064 ENSMUSG00000078435 AU041133 - - 10|10 C1 expressed sequence AU041133 protein-coding 98158 C81543 - - - expressed sequence C81543 unknown 107997 Rtp - - - resistance to transplantable plasmacytoma MPC 11 unknown 77291 9430079G20Rik - - 3|3 RIKEN cDNA 9430079G20 gene protein-coding 102637878 LOC102637878 - - 3 H2 60S ribosomal protein L21 pseudogene pseudo 62457 D14Mit257 - - 14 26.44 cM DNA Segment, Chr 14 Massachusetts Institute of Technology 257 unknown 68342 Mm.1129 NM_026684 ENSMUSG00000040048 Ndufb10 0610011B04Rik|22kDa|PDSW - 17|17 A3.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 protein-coding 110142 Rn18s-rs4 - - - 18s RNA, related sequence 4 rRNA 105246393 Gm41685 - - 18|18 predicted gene, 41685 ncRNA 19291 Mm.296150 NM_011221 ENSMUSG00000094483 Purb 2310015K15Rik|AA114818|Cager-2|D11Bwg0414e - 11 A1|11 4.16 cM purine rich element binding protein B protein-coding 100035356 Pregq1 - - 11 32.13 cM pregnancy QTL 1 unknown 22167 Txn-ps1 - - 1 C1.1|1 23.63 cM thioredoxin, pseudogene 1 pseudo 97736 C81354 - - - expressed sequence C81354 unknown 109828 Mm.208034 NM_001243837 ENSMUSG00000079105 C7 A530026G17|Gm1238 - 15 A1|15 1.98 cM complement component 7 protein-coding 19461 Rb(10.12)5Lub Rb5Lub - - Robertsonian translocation, Chr 10 and 12, Lubeck 5 other 319735 A430036H03Rik - - 10|10 RIKEN cDNA A430036H03 gene protein-coding 78829 Mm.286399 NM_023910 ENSMUSG00000029723 Tsc22d4 0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2 - 5|5 G2 TSC22 domain family, member 4 protein-coding 72709 Mm.34776 NM_028331 ENSMUSG00000022440 C1qtnf6 2810036M19Rik|CTRP6 - 15|15 E1 C1q and tumor necrosis factor related protein 6 protein-coding 547109 Mm.304302 NM_001034906 ENSMUSG00000090693 Trim43a EG547109|Gm6021 - 9|9 E3.1 tripartite motif-containing 43A protein-coding 100043682 Mm.482794 NR_028578 ENSMUSG00000109270 Gm10584 - - 7|7 F3 predicted gene 10584 ncRNA 28064 Mm.248769 NM_145353 ENSMUSG00000071074 Yipf3 C6orf109|D17Wsu94e|KLIP1 - 17 C|17 22.9 cM Yip1 domain family, member 3 protein-coding 100503890 Mm.254898 NM_001195244 ENSMUSG00000087687 Pet100 2900053A13Rik - 8|8 A1.1 PET100 homolog protein-coding 108168717 XR_001783053 LOC108168717 - - - uncharacterized LOC108168717 ncRNA 435489 Gm5678 EG435489 - 16|16 C4 carbonyl reductase 1 pseudogene pseudo 383691 Gm13472 - - 2|2 B predicted gene 13472 pseudo 94091 Mm.248049 NM_053168 ENSMUSG00000020455 Trim11 - - 11|11 B1.3 tripartite motif-containing 11 protein-coding 108168207 XR_001781481 Gm46491 - - 14 A1|14 predicted gene, 46491 ncRNA 171168 Mm.218784 NM_175731 ENSMUSG00000045019 Acer1 2310024P18Rik|AI662009|Alkcdase1|Asah3|Cer1 - 17|17 D alkaline ceramidase 1 protein-coding 100036382 Lore11 - - - loss of righting induced by ethanol 11 unknown 102633961 XR_383097 Gm31658 - - 14 A2|14 predicted gene, 31658 ncRNA 98247 Mm.441818 AA986695 - - - expressed sequence AA986695 unknown 97024 C87037 - - - expressed sequence C87037 unknown 15483 Mm.28328 NM_008288 ENSMUSG00000016194 Hsd11b1 - - 1|1 H6 hydroxysteroid 11-beta dehydrogenase 1 protein-coding 625354 Gm13549 - - 2|2 C1.1 lactate dehydrogenase A pseudogene pseudo 606718 Gm6077 EG606718|Ppia-ps3_1390.1 - 3|3 G3 peptidylprolyl isomerase A pseudogene 3_1390.1 pseudo 77913 Mm.86331 NM_183128 A030003K21Rik - - 1|1 C5 RIKEN cDNA A030003K21 gene protein-coding 109931 Tex1 - - - testis expressed gene 1 protein-coding 263764 Mm.122091 NM_170597 ENSMUSG00000050967 Creg2 A830098L22Rik - 1|1 B cellular repressor of E1A-stimulated genes 2 protein-coding 102636591 XR_373685 Gm33610 - - 1 H2.3|1 predicted gene, 33610 ncRNA 102636811 XR_374818 Gm33780 - - 2 E1|2 predicted gene, 33780 ncRNA 102643244 Mm.212244 XR_871116 Gm16252 - - 9 F1|9 55.45 cM predicted gene 16252 ncRNA 258984 Mm.389309 NM_146982 ENSMUSG00000049057 Olfr1257 MOR232-1 - 2|2 E1 olfactory receptor 1257 protein-coding 100689012 Gm29696 - - 12 A1.1|12 predicted gene, 29696 pseudo 105246283 Gm41587 - - 17|17 predicted gene, 41587 protein-coding 102639013 XR_375193 LOC102639013 - - 2 H2 uncharacterized LOC102639013 ncRNA 116739 Dautb1 - - - dopamine uptake transporter binding 1 unknown 24067 Mm.471968 NM_011899 ENSMUSG00000073079 Srp54a 54kDa|Srp54 - 12|12 C1 signal recognition particle 54A protein-coding 65972 Mm.30241 NM_023065 Ifi30 GILT|IP30 - 8|8 B3.3 interferon gamma inducible protein 30 protein-coding 102634384 XR_383662 Gm31980 - - 14 D3|14 predicted gene, 31980 ncRNA 402765 6030422H21Rik - - 17|17 RIKEN cDNA 6030422H21 gene protein-coding 62548 D11Mit202 - - 11 75.23 cM DNA segment, Chr 11, Massachusetts Institute of Technology 202 unknown 102635284 Gm29627 - - 7 B1|7 predicted gene 29627 pseudo 625796 Fam136b-ps EG625796|Gm6624 - 15|15 B2 family with sequence similarity 136, member B, pseudogene pseudo 66526 Mm.246956 NM_025617 ENSMUSG00000028619 Tceanc2 2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2 - 4|4 C7 transcription elongation factor A (SII) N-terminal and central domain containing 2 protein-coding 102640757 XR_375360 Gm36749 - - 2 H3|2 predicted gene, 36749 ncRNA 105243086 XR_880993 Gm39112 - - 7 F4|7 predicted gene, 39112 ncRNA 61723 D5Mit284 - - 5 78.74 cM DNA segment, Chr 5, Massachusetts Institute of Technology 284 unknown 258949 Mm.377765 NM_146947 ENSMUSG00000068950 Olfr338 MOR136-5 - 2|2 B olfactory receptor 338 protein-coding 64177 Mm.296889 NM_022413 ENSMUSG00000029868 Trpv6 CAT|CaT1|Cac|Ecac2|Otrpc3 - 6|6 B2.1 transient receptor potential cation channel, subfamily V, member 6 protein-coding 100039471 Vmn2r-ps84 - - 7|7 D3 vomeronasal 2, receptor, pseudogene 84 pseudo 70052 Mm.30660 NM_027297 ENSMUSG00000066148 Prpf4 1600015H11Rik|AI874830|AW047464|bN189G18.1 - 4|4 B3 pre-mRNA processing factor 4 protein-coding 108167567 LOC108167567 - - 8 A4 60S ribosomal protein L29 pseudogene pseudo 100036012 Pstc3 - - - periosteal circumference 3 unknown 625585 Mm.389497 NR_045362 ENSMUSG00000104543 Gm6602 - - 3 F3|3 predicted gene 6602 ncRNA 69020 Mm.294295 NM_001081065 ENSMUSG00000034429 Zfp707 1500031N24Rik|AI451708|AW495315 - 15|15 D3 zinc finger protein 707 protein-coding 108168905 XR_001784012 Gm46828 - - 3 H2|3 predicted gene, 46828 ncRNA 100416697 Gm18204 - - 7|7 A1 zinc finger protein 273 pseudogene pseudo 100418427 Gm19206 - - 1|1 C1.1 TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq pseudogene pseudo 72139 Mm.426514 NM_153780 ENSMUSG00000071302 2610044O15Rik8 2610044O15Rik - 8 E2|8 RIKEN cDNA 2610044O15 gene protein-coding 638605 Ighv2-5 Gm16593 - 12|12 F1 immunoglobulin heavy variable 2-5 other 22310 Mm.359403 NM_009493 ENSMUSG00000070844 Vmn2r42 V2r4 - 7 A1|7 5.8 cM vomeronasal 2, receptor 42 protein-coding 100042677 Obox4-ps8 Gm3959 - 7 A1|7 oocyte specific homeobox 4, pseudogene 8 pseudo 114301 Mm.253736 NM_023245 ENSMUSG00000033377 Palmd 4631423C22Rik|PALML - 3 G1|3 50.49 cM palmdelphin protein-coding 257914 Mm.377299 NM_001011757 ENSMUSG00000109806 Olfr663 MOR40-12 - 7|7 E3 olfactory receptor 663 protein-coding 20738 Mm.431547 NR_033583 ENSMUSG00000116210 Spn-ps Cd43-ps - 15|15 E3 sialophorin, pseudogene pseudo 102640227 XR_392414 ENSMUSG00000101425 Gm29255 CH36-202N10.1 - Y D|Y predicted gene 29255 ncRNA 102638068 Gm28899 - - Y|Y predicted gene 28899 ncRNA 667030 Slc25a5-ps EG667030|Gm8429 - 14|14 A1 Slc25a5 retrotransposed pseudogene pseudo 102467456 n-TAcgc4 n-Ta23 - X F1|X nuclear encoded tRNA alanine 4 (anticodon CGC) tRNA 105243882 XR_872286 Gm39607 - - 11 A3.1|11 predicted gene, 39607 ncRNA 73430 Mm.379224 NM_028538 ENSMUSG00000070709 Zfp974 1700049G17Rik|AV321011|BB026409 - 7|7 A3 zinc finger protein 974 protein-coding 100036103 Sdtq2 L2 - - skull development traits QTL 2 unknown 97815 C80571 - - - expressed sequence C80571 unknown 223869 A130012F09 - - 15|15 F1 uncharacterized A130012F09 unknown 66836 Mm.440071 NM_025791 ENSMUSG00000010097 Tmem223 0610006I08Rik - 19|19 A transmembrane protein 223 protein-coding 572559 Gm6039 EG572559 - X|X A7.3 protein phosphatase 4, regulatory subunit 2 pseudogene pseudo 665306 Mm.358758 NR_030715 ENSMUSG00000038917 3930402G23Rik - - 8|8 A1.1 RIKEN cDNA 3930402G23 gene ncRNA 621467 Gm6228 EG621467 - X|X F1 preferentially expressed antigen in melanoma-like 3 pseudogene pseudo 449563 AF357428 MBII-78 - 12 60.56 cM snoRNA AF357428 protein-coding 70000 Mm.460061 2410024N13Rik - - 3|3 F2.2 RIKEN cDNA 2410024N13 gene protein-coding 671650 XM_017313738 Gm20783 - - 9|9 F4 predicted gene, 20783 protein-coding 100417907 Gm18893 - - 3|3 B POU domain, class 5, transcription factor 1 pseudogene pseudo 26382 Mm.279187 NM_013710 ENSMUSG00000024013 Fgd2 Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2 - 17 15.26 cM|17 A3.3 FYVE, RhoGEF and PH domain containing 2 protein-coding 102632152 XM_006516996 ENSMUSG00000114073 Gm30302 - - 13 A5|13 predicted gene, 30302 protein-coding 620395 Tdgf1-ps1 EG620395|Gm6148|Tdgf2 - 16 A1|16 2.19 cM teratocarcinoma-derived growth factor, pseudogene 1 pseudo 227656 Mm.291874 NM_207234 ENSMUSG00000052406 Rexo4 Gm111|Rex4|Xpmc2h - 2|2 A3 REX4, 3'-5' exonuclease protein-coding 100502999 Gm19497 - - 1|1 58.1 cM predicted gene, 19497 protein-coding 628757 Gm6912 EG628757 - 16|16 B5 adenine phosphoribosyl transferase, pseudogene pseudo 110120433 LOC110120433 - - - VISTA enhancer mm1391 biological-region 102638876 XR_377725 Gm35335 - - 6 B3|6 predicted gene, 35335 ncRNA 53727 D17Zt5 D17Mia5 - - DNA segment, Chr 17, Zdenek Trachtulec 5 unknown 328366 Mm.35308 C130057D09Rik - - 14|14 A3 RIKEN cDNA C130057D09 gene protein-coding 105242781 Gm38904 - - 6|6 predicted gene, 38904 ncRNA 74596 Mm.46764 NM_173370 ENSMUSG00000029330 Cds1 4833409J18Rik|AI314024|AW125888 - 5|5 E4 CDP-diacylglycerol synthase 1 protein-coding 665172 Gm7525 EG665172 - 10|10 A2 predicted gene 7525 pseudo 19055 Mm.331389 NM_008913 ENSMUSG00000028161 Ppp3ca 2900074D19Rik|CN|Caln|Calna|CnA - 3|3 G3 protein phosphatase 3, catalytic subunit, alpha isoform protein-coding 108167454 XR_001778249 LOC108167454 - - 7 E3 uncharacterized LOC108167454 ncRNA 102632845 XR_384360 Gm30810 - - 15 E3|15 predicted gene, 30810 ncRNA 117591 Mm.260137 NM_145559 ENSMUSG00000005107 Slc2a9 Glut9|SLC2A9B|SLC2a9A - 5|5 B3 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 102640400 Gm36467 - - Y|Y predicted gene, 36467 ncRNA 62707 D17Mit150 - - 17 30.61 cM DNA segment, Chr 17, Massachusetts Institute of Technology 150 unknown 171215 Bplpf2 - - - bleomycin pulmonary fibrosis 2 unknown 27724 D1Sta5 - - - DNA segment, Chr 1, Philip Stanier 5 unknown 101243625 Gm29812 - - 11 A3.1|11 heterogeneous nuclear ribonucleoprotein R pseudogene pseudo 665283 Gm11971 - - 11|11 A1 predicted gene 11971 protein-coding 633789 Gm7126 EG633789 - 12 A1.1|12 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 pseudogene pseudo 109280031 LOC109280031 Mm245 - - VISTA enhancer mm245 biological-region 27617 D0Hgu8 - - - DNA segment, Human Genetics Unit 8 unknown 100124395 Traj8 Gm16918 - 14|14 C2 T cell receptor alpha joining 8 pseudo 105244926 XR_869796 Gm40448 - - 7 E1|7 predicted gene, 40448 ncRNA 258309 Mm.377429 NM_146312 ENSMUSG00000073923 Olfr657 MOR40-13 - 7|7 E3 olfactory receptor 657 protein-coding 102640517 XR_388857 Gm36558 - - 11 B5|11 predicted gene, 36558 ncRNA 497118 Dcr3 - - - decoy receptor 3 protein-coding 110829 Mm.57734 NM_026148 ENSMUSG00000019920 Lims1 2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1 - 10 B4|10 29.31 cM LIM and senescent cell antigen-like domains 1 protein-coding 74238 Mm.255401 NM_028832 ENSMUSG00000049038 Mterf2 1700007D05Rik|Mterfd3 - 10|10 C1 mitochondrial transcription termination factor 2 protein-coding 102635792 XR_376998 Gm33040 - - 5 C3.1|5 predicted gene, 33040 ncRNA 20588 Mm.85410 NM_009211 ENSMUSG00000032481 Smarcc1 AI115498|BAF155|Rsc8|SRG3|msp3 - 9|9 F2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 protein-coding 210766 Mm.226957 NM_145956 ENSMUSG00000031201 Brcc3 C6.1A - X|X A7.3 BRCA1/BRCA2-containing complex, subunit 3 protein-coding 319302 A730043B01Rik - - - RIKEN cDNA A730043B01 gene protein-coding 218333 Mm.139738 NM_144837 ENSMUSG00000034525 Ice1 C77245|mKIAA0947 - 13|13 C1 interactor of little elongation complex ELL subunit 1 protein-coding 218030 Mm.352263 NM_175006 ENSMUSG00000009734 Pou6f2 D130006K24Rik|RPF-1 - 13|13 A2 POU domain, class 6, transcription factor 2 protein-coding 28099 DYzEms1 - - - DNA segment, Chr Y, repetitive sequence, Elizabeth M. Simpson 1 unknown 668838 NM_001163289 Gm9392 EG668838 - 7|7 B3 Rap1A-retro1 pseudo 102632729 Gm30725 - - 1|1 predicted gene, 30725 ncRNA 98579 AU022928 - - - expressed sequence AU022928 unknown 628923 Mm.79600 NM_001085544 ENSMUSG00000079522 Gm14744 OBP1|OBP2|Obp1f - X|X B predicted gene 14744 protein-coding 102639767 Mm.415473 Gm13748 - - 1|1 32.38 cM predicted gene 13748 ncRNA 105243328 XR_879355 Gm39281 - - 8 E2|8 predicted gene, 39281 ncRNA 102640810 XR_001781703 Gm36790 - - 15 B1|15 predicted gene, 36790 ncRNA 77006 Mm.440063 NM_029832 ENSMUSG00000068290 Ddrgk1 1110001I20Rik|2600009E05Rik|AI326138|Ufbp1 - 2|2 F1 DDRGK domain containing 1 protein-coding 21010 T(1;14)5Gso T5Gso - - reciprocal translocation, Chr 1 and 14, Generoso 5 other 102636793 Mm.470084 Gm45752 Gm33766 - 8|8 predicted gene 45752 ncRNA 22054 n-THgtg5 Trnah2|n-Th5 - 2|2 E5 nuclear encoded tRNA histidine 5 (anticodon GTG) tRNA 108062 Mm.67938 NM_133196 ENSMUSG00000031256 Cstf2 C630034J23Rik|Cstf64|mir-3112 - X|X E3 cleavage stimulation factor, 3' pre-RNA subunit 2 protein-coding 102467333 n-TLcaa3 n-Tl12 - 11 B1.3|11 nuclear encoded tRNA leucine 3 (anticodon CAA) tRNA 619824 Igkv12-49 - - 6|6 C1 immunoglobulin kappa chain variable 12-49 pseudo 102467649 n-TLcag7 n-Tl19 - 1 H3|1 nuclear encoded tRNA leucine 7 (anticodon CAG) tRNA 102637265 Mm.417689 Gm29507 - - 7|7 predicted gene 29507 ncRNA 60690 D4Mit1 - - 4 7.09 cM DNA segment, Chr 4, Massachusetts Institute of Technology 1 unknown 73316 Mm.196315 NM_028500 ENSMUSG00000019732 Calr3 1700031L01Rik|6330586I20Rik|Crt2|cspn - 8|8 B3.3 calreticulin 3 protein-coding 102632811 XR_865531 Gm30788 - - 1 C3|1 predicted gene, 30788 ncRNA 64938 Cigs2 CNS-7|Cns7 - 11|11 conserved intergenic sequence 2 other 240289 Gm4950 EG240289 - 18|18 D1 proteasome (prosome, macropain) subunit, beta type 3 pseudogene pseudo 101056178 XR_391425 Gm29791 Gm44762 - 7 B3|7 predicted gene, 29791 ncRNA 78122 Mm.243821 4930445N08Rik - - 2|2 RIKEN cDNA 4930445N08 gene protein-coding 67724 Mm.248779 NM_026340 ENSMUSG00000022325 Pop1 4932434G09Rik - 15|15 B3.1 processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae) protein-coding 258629 Mm.271479 NM_146636 ENSMUSG00000094846 Olfr1487 MOR202-18 - 19|19 A olfactory receptor 1487 protein-coding 76096 5830468K08Rik - - 3|3 RIKEN cDNA 5830468K08 gene protein-coding 51998 D17Ertd191e - - 17 19.57 cM DNA segment, Chr 17, ERATO Doi 191, expressed unknown 667067 Mm.480264 NM_001166736 ENSMUSG00000095201 Vmn1r91 EG667067|Gm8442 - 7|7 A3 vomeronasal 1 receptor 91 protein-coding 100042727 Gm3993 - - 12 A1.2|12 predicted gene 3993 protein-coding 192104 Stheal7 - - 7 81.85 cM soft tissue heal 7 unknown 113843 Insq9 - - 10 39.72 cM insulin QTL 9 unknown 112280 Rigs1 - - 7 35.19 cM radiation induced gastroschisis 1 unknown 62797 D14Mit228 - - - DNA segment, Chr 14, Massachusetts Institute of Technology 228 unknown 108167623 XR_001778912 Gm46091 - - 1 B|1 predicted gene, 46091 ncRNA 258299 Mm.329752 NM_146302 ENSMUSG00000045883 Olfr1461 MOR202-35 - 19|19 A olfactory receptor 1461 protein-coding 241041 Mm.290634 NR_002858 ENSMUSG00000025936 Gm4956 EG241041 - 1 A4|1 predicted gene 4956 pseudo 435766 Mm.210428 NM_177066 ENSMUSG00000040086 Tnni3k Cark|D830019J24Rik - 3|3 H4 TNNI3 interacting kinase protein-coding 66855 Mm.178818 NM_025804 ENSMUSG00000001472 Tcf25 1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049 - 8 E1|8 72.1 cM transcription factor 25 (basic helix-loop-helix) protein-coding 69166 Mm.491059 NR_038140 ENSMUSG00000101088 1810018F18Rik 1810031L05Rik|1810047O18Rik - 19|19 D2 RIKEN cDNA 1810018F18 gene ncRNA 320213 Mm.152890 NM_023801 ENSMUSG00000022772 Senp5 6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3 - 16|16 B2 SUMO/sentrin specific peptidase 5 protein-coding 666854 Gm15794 EG666854 - 5|5 C3.1 predicted gene 15794 pseudo 52107 D8Ertd130e - - 8 5.3 cM DNA segment, Chr 8, ERATO Doi 130, expressed unknown 61421 D5Mit215 - - 5 66.13 cM DNA segment, Chr 5, Massachusetts Institute of Technology 215 unknown 105245849 XR_874926 Gm41238 - - 14 E2.3|14 predicted gene, 41238 ncRNA 259116 Mm.377856 NM_147112 ENSMUSG00000066272 Olfr559 MOR11-1 - 7|7 E3 olfactory receptor 559 protein-coding 61033 D8Mit143 - - 8 11.59 cM DNA segment, Chr 8, Massachusetts Institute of Technology 143 unknown 96957 Mm.315212 NM_175285 ENSMUSG00000054484 Tmem62 B830009D23Rik|C77355 - 2|2 E5 transmembrane protein 62 protein-coding 102634530 Mm.488748 XR_382757 Gm32089 - - 13 C3|13 predicted gene, 32089 ncRNA 107157 Mm.393351 AI327134 - - - expressed sequence AI327134 protein-coding 102637305 Gm12586 - - 11|11 87.92 cM predicted gene 12586 pseudo 75383 4930599N24Rik - - 3|3 RIKEN cDNA 4930599N24 gene protein-coding 70298 2600010L24Rik - - 5|5 RIKEN cDNA 2600010L24 gene protein-coding 108961160 LOC108961160 - - - Pou5f1 5' regulatory region biological-region 108377 Xmv7 Xmv-7 - - xenotropic murine leukemia virus 7 other 108167930 XR_001780345 LOC108167930 - - 11 E1 uncharacterized LOC108167930 ncRNA 623174 Rpl34-ps2 EG623174|Gm6404 - 13|13 D2.2 ribosomal protein L34, pseudogene 2 pseudo 19222 Mm.287572 NM_008967 ENSMUSG00000043017 Ptgir IP|PGI2 - 7 A2|7 9.15 cM prostaglandin I receptor (IP) protein-coding 224440 Mm.10628 NM_145482 ENSMUSG00000022948 Setd4 AY037804|C21orf18|ORF21 - 16|16 C4 SET domain containing 4 protein-coding 102465184 NR_105776 ENSMUSG00000098276 Mir6358 Gm27830|mmu-mir-6358 - 18|18 E3 microRNA 6358 ncRNA 236537 Mm.214642 NM_153102 ENSMUSG00000070902 Zfp352 2czf48 - 4|4 C5 zinc finger protein 352 protein-coding 100526822 Gm9778 - - - predicted gene 9778 protein-coding 110120412 LOC110120412 - - - VISTA enhancer mm268 biological-region 77401 9430087J23Rik - - 1|1 RIKEN cDNA 9430087J23 gene protein-coding 212952 Mm.477436 NM_001101450 ENSMUSG00000091497 Gm44 - - X|X C1 predicted gene 44 protein-coding 74841 Mm.246018 NM_027554 ENSMUSG00000038250 Usp38 4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891 - 8 C2|8 38.68 cM ubiquitin specific peptidase 38 protein-coding 108169007 Gm46890 - - 4 E1|4 arylacetamide deacetylase-like 4 pseudo 54411 Mm.21961 NM_018794 ENSMUSG00000019087 Atp6ap1 16A|AC45|AI316502|AW108110|Atp6ip1|Atp6s1|C7-1|CF2|VATPS1|XAP-3|mFLJ00383 - X A7.3|X 37.96 cM ATPase, H+ transporting, lysosomal accessory protein 1 protein-coding 20531 Mm.284891 NM_011402 ENSMUSG00000029188 Slc34a2 AA536683|D5Ertd227e|NaPi-2b|Npt2b - 5 C1|5 28.92 cM solute carrier family 34 (sodium phosphate), member 2 protein-coding 329934 Mm.277090 NM_194060 ENSMUSG00000052135 Foxo6 - - 4|4 D2.1 forkhead box O6 protein-coding 78933 Mm.435620 NM_030231 ENSMUSG00000061298 Agbl4 4930578N11Rik|4931433A01Rik - 4|4 C7-D1 ATP/GTP binding protein-like 4 protein-coding 634504 XM_001477786 ENSMUSG00000095721 Gm7137 - - 10 C1|10 predicted gene 7137 protein-coding 665350 Mm.214019 Gm7596 EG665350 - 5|5 B1 predicted gene 7596 protein-coding 62184 D15Mit37 - - 15 40.89 cM DNA segment, Chr 15, Massachusetts Institute of Technology 37 unknown 236798 Mm.35282 NM_001033327 ENSMUSG00000053852 Adgrg4 Gm367|Gpr112|PGR17 - X|X A6 adhesion G protein-coupled receptor G4 protein-coding 20700 Mm.439692 NM_009243 ENSMUSG00000066366 Serpina1a Aat-2|Aat2|Dom1|PI1|Spi1-1|Spi1-3 - 12 E|12 52.98 cM serine (or cysteine) peptidase inhibitor, clade A, member 1A protein-coding 100861484 NR_046132 ENSMUSG00000095652 n-R5s123 Rn5s14 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 123 rRNA 105243431 Gm39357 - - 9|9 predicted gene, 39357 ncRNA 13034 Mm.230249 NM_007799 ENSMUSG00000004552 Ctse A430072O03Rik|C920004C08Rik|CE|CatE - 1 E4|1 57.14 cM cathepsin E protein-coding 545851 Igkv12-44 Gm16851 - 6|6 C1 immunoglobulin kappa variable 12-44 other 628359 Gm6871 EG628359 - 7|7 B3 predicted gene 6871 protein-coding 77038 Mm.43636 NM_023854 ENSMUSG00000027255 Arfgap2 2310032E02Rik|Zfp289 - 2|2 E1 ADP-ribosylation factor GTPase activating protein 2 protein-coding 76192 Mm.112632 NM_024465 ENSMUSG00000032046 Abhd12 1500011G07Rik|6330583M11Rik|AI431047|AW547313 - 2|2 G3 abhydrolase domain containing 12 protein-coding 69566 Mm.396405 NR_045491 ENSMUSG00000102098 2310016D03Rik - - 12|12 A2 RIKEN cDNA 2310016D03 gene ncRNA 320799 Mm.436734 NM_177263 ENSMUSG00000035877 Zhx3 1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395 - 2|2 H2 zinc fingers and homeoboxes 3 protein-coding 100039294 Gm20801 - - Y|Y predicted gene, 20801 protein-coding 104389 Ifi12 - - - interferon activated gene 12 protein-coding 100036236 Cia29 - - - collagen induced arthritis QTL 29 unknown 67256 Dlx6os3 2900009C24Rik|Dlx6os2 - 6|6 distal-less homeobox 6, opposite strand 3 unknown 105245824 XR_874831 Gm41214 - - 14 D3|14 predicted gene, 41214 ncRNA 210982 Mm.37642 NM_001100452 ENSMUSG00000036568 Bicral Gltscr1l|mKIAA0240 - 17|17 C BRD4 interacting chromatin remodeling complex associated protein like protein-coding 399603 Mm.411968 NM_207269 ENSMUSG00000072568 Fam84b BF642811|D330050I23Rik - 15|15 D1 family with sequence similarity 84, member B protein-coding 100041342 Gm12537 - - 4|4 B3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 76033 5830435N06Rik - - 11|11 RIKEN cDNA 5830435N06 gene protein-coding 62139 D13Mit71 - - 13 54.35 cM DNA segment, Chr 13, Massachusetts Institute of Technology 71 unknown 387284 Mm.379565 XM_017318681 Ssxb7 EG627853|Gm6797 - X|X A1.1 synovial sarcoma, X member B7 protein-coding 105243496 XR_001779258 Gm39400 - - 9 E3.3|9 predicted gene, 39400 ncRNA 100042109 Mm.432195 NM_001099325 ENSMUSG00000073257 Gm10488 - - X|X A3.1 predicted gene 10488 protein-coding 100310781 Mm.397795 LOC100310781 - - 12 C3 uncharacterized LOC100310781 unknown 100035312 Lmr18 - - 16 48.96 cM leishmaniasis resistance 18 unknown 195349 NM_001081663 Btnl7-ps Btnl7|Gm34 - 17|17 B1 butyrophilin-like 7, pseudogene pseudo 102635787 Mm.412577 NR_155866 Gm33035 - - 10 B5.3|10 predicted gene, 33035 ncRNA 100862220 XR_390012 ENSMUSG00000079773 LOC100862220 - - - uncharacterized LOC100862220 ncRNA 114541 Bbaa6 Bb6 - 12 60.56 cM B.burgdorferi-associated arthritis 6 unknown 17896 Mm.390355 NM_010858 ENSMUSG00000061086 Myl4 ALC1|AMLC|ELC|ELC1a|GT1|MLC1EMB|MLC1a|Myla - 11 E1|11 67.79 cM myosin, light polypeptide 4 protein-coding 435528 Mm.359622 NM_001145060 ENSMUSG00000091043 Glyatl3 EG435528|Gm5683 - 17|17 B2 glycine-N-acyltransferase-like 3 protein-coding 269717 Mm.308396 NM_178751 ENSMUSG00000039747 Orai2 A730041O15Rik|Tmem142b - 5|5 G2 ORAI calcium release-activated calcium modulator 2 protein-coding 69202 Mm.142187 NM_026988 ENSMUSG00000030122 Ptms 2610009E16Rik - 6|6 F2 parathymosin protein-coding 100040857 Gm3004 - - 16 C4|16 predicted gene 3004 protein-coding 100417128 Gm18411 - - 7|7 E3 5-azacytidine induced gene 2 pseudogene pseudo 100034801 Tgq1 - - 18 40.14 cM triglyceride QTL 1 unknown 56706 Mm.175612 NM_019937 ENSMUSG00000027829 Ccnl1 2610030E23Rik|AU018493|Ccnl|ania-6a - 3|3 E1 cyclin L1 protein-coding 113852 Mm.377149 NM_053225 ENSMUSG00000094553 Vmn1r50 V1RA5|V1rb1|VN2 - 6|6 D1 vomeronasal 1 receptor 50 protein-coding 96909 C81203 - - - expressed sequence C81203 unknown 100416069 Gm17902 - - X|X B nucleoplasmin 3 pseudogene pseudo 16348 Mm.317706 NM_010569 ENSMUSG00000028344 Invs Nphp2|inv - 4 B1|4 26.11 cM inversin protein-coding 69179 Mm.143025 NM_028839 ENSMUSG00000006526 Tmem110 1810038N08Rik|2310014H19Rik|AW554125|STIMATE - 14|14 B transmembrane protein 110 protein-coding 102640886 XR_378075 Gm36844 - - 6 G1|6 predicted gene, 36844 ncRNA 17941 Naip1-rs1 Birc1-rs1|Naip-rs1 - 13 D1|13 53.03 cM NLR family, apoptosis inhibitory protein 1, related sequence 1 pseudo 60406 Mm.118 NM_021788 ENSMUSG00000031609 Sap30 30kDa - 8 B2|8 29.85 cM sin3 associated polypeptide protein-coding 20128 Mm.295578 NM_009099 ENSMUSG00000030921 Trim30a Rpt-1|Rpt1|Trim30 - 7 E3|7 55.69 cM tripartite motif-containing 30A protein-coding 259009 Mm.377786 NM_147007 ENSMUSG00000056921 Olfr394 MOR135-8 - 11|11 B4 olfactory receptor 394 protein-coding 69906 Mm.17875 NM_172402 ENSMUSG00000022299 Slc25a32 2610043O12Rik|Mftc - 15|15 B3.1 solute carrier family 25, member 32 protein-coding 606735 Mm.246808 NR_015464 ENSMUSG00000097868 A330069E16Rik - - 2|2 E1 RIKEN cDNA A330069E16 gene ncRNA 66716 Mm.56430 NM_025724 ENSMUSG00000047025 Ccer1 4921510H08Rik|AV259683 - 10|10 C3 coiled-coil glutamate-rich protein 1 protein-coding 111988 Insq3 - - - insulin QTL 3 unknown 109754 Mm.22560 NM_029787 ENSMUSG00000018042 Cyb5r3 0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3 - 15 E1|15 39.4 cM cytochrome b5 reductase 3 protein-coding 73785 Mm.482314 4930431H11Rik - - 3|3 RIKEN cDNA 4930431H11 gene protein-coding 65962 Mm.21587 NM_023055 ENSMUSG00000002504 Slc9a3r2 0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1 - 17|17 A3.3 solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2 protein-coding 665887 Gm7839 EG665887 - 7|7 A1 predicted gene 7839 pseudo 102637732 XR_377099 Gm34468 - - 5 G1.3|5 predicted gene, 34468 ncRNA 107451 Fv6 Fv-6 - - Friend virus susceptibility 6 unknown 100042256 Gm12063 - - 11|11 A3.2 predicted gene 12063 protein-coding 74206 Mm.447042 NM_001081028 ENSMUSG00000030583 Sipa1l3 2610511M17Rik - 7|7 B1 signal-induced proliferation-associated 1 like 3 protein-coding 100417555 Gm12045 - - 11|11 A3.1 RAB5C, member RAS oncogene family pseudogene pseudo 100417982 Gm18934 - - 9|9 A1 RAB11 family interacting protein 5 (class I) pseudogene pseudo 100036026 Bmd28 Bmd21 - - bone mineral density 28 unknown 18087 Mm.32842 NM_010918 ENSMUSG00000032525 Nktr 5330401F18Rik|D9Wsu172e - 9 F4|9 72.57 cM natural killer tumor recognition sequence protein-coding 106582 Mm.390992 NM_134122 ENSMUSG00000059791 Nrm 2610307M02Rik|AI429796 - 17|17 B1 nurim (nuclear envelope membrane protein) protein-coding 108168176 XM_011244817 ENSMUSG00000094706 Gm10338 - - 14 4.47 cM|14 A1 predicted gene 10338 protein-coding 442802 Mm.356327 NM_001002770 C330011M18Rik - - 8|8 C3 RIKEN cDNA C330011M18 gene unknown 258880 Mm.377732 NM_001001809 ENSMUSG00000046643 Olfr218 MOR267-3|Olfr1405-ps1|Olfr218-ps1 - 1|1 H3 olfactory receptor 218 protein-coding 99730 Mm.24431 NM_025444 ENSMUSG00000048100 Taf13 1810004N01Rik|2010309N11Rik|AI847295|TAFII18 - 3|3 F3 TATA-box binding protein associated factor 13 protein-coding 73876 4930432F03Rik - - 4|4 RIKEN cDNA 4930432F03 gene protein-coding 73067 Mm.294445 NM_028427 ENSMUSG00000025521 Tmem192 3110005G23Rik - 8|8 B3.1 transmembrane protein 192 protein-coding 14815 Mm.129481 NM_008173 ENSMUSG00000024431 Nr3c1 GR|Grl-1|Grl1 - 18 B3|18 21.09 cM nuclear receptor subfamily 3, group C, member 1 protein-coding 76628 Mm.384589 NR_131043 ENSMUSG00000097527 1700112J16Rik - - 7|7 C RIKEN cDNA 1700112J16 gene ncRNA 73347 Mm.63848 NM_028511 ENSMUSG00000057402 Cldn34b2 1700042B14Rik - X|X F3 claudin 34B2 protein-coding 108168682 LOC108168682 - - - PRAME family member 8-like pseudo 102634456 Mm.342392 Gm32036 - - 13|13 predicted gene, 32036 ncRNA 73914 Mm.146194 NM_028679 ENSMUSG00000020227 Irak3 4833428C18Rik|AI563835|IRAK-M - 10|10 D2 interleukin-1 receptor-associated kinase 3 protein-coding 673977 Mm.480248 NM_001166759 ENSMUSG00000095275 Vmn1r107 100043561|Gm4519|Gm9609|Vmn1r110 - 7 A3|7 vomeronasal 1 receptor 107 protein-coding 100035696 Lore9 - - - loss of righting induced by ethanol 9 unknown 100417482 Gm18639 - - 7|7 A1 Ewing sarcoma breakpoint region 1 pseudogene pseudo 108954 Mm.293628 NM_133819 ENSMUSG00000046062 Ppp1r15b 1810033K10Rik|AI606441|C530022L24Rik|CReP - 1|1 E4 protein phosphatase 1, regulatory (inhibitor) subunit 15b protein-coding 100312566 Vmn1r-ps140 - - 17 A3.2|17 vomeronasal 1 receptor, pseudogene 140 pseudo 111513 Xmmv75 Env-54 - - xenotropic-MCF leukemia virus 75 other 319204 3632413A11Rik - - 4|4 RIKEN cDNA 3632413A11 gene protein-coding 108012 Mm.426783 NM_026887 ENSMUSG00000031367 Ap1s2 1500012A13Rik|AI853648|EST1 - X|X F5 adaptor-related protein complex 1, sigma 2 subunit protein-coding 70548 Mm.102557 5730437C12Rik - - 2|2 RIKEN cDNA 5730437C12 gene protein-coding 105246548 Gm41822 - - 19|19 predicted gene, 41822 ncRNA 105245474 Mm.212754 XR_873274 ENSMUSG00000114710 Gm40923 - - 13 A3.3|13 predicted gene, 40923 ncRNA 240055 Mm.133211 NM_001081656 ENSMUSG00000034413 Neurl1b C230078M08Rik|EG240055 - 17 A3.3|17 neuralized E3 ubiquitin protein ligase 1B protein-coding 359901 DXMgc58 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 58 unknown 108167758 XR_001779644 Gm46181 - - 10 D2|10 predicted gene, 46181 ncRNA 100416788 Gm18251 - - 10|10 C1 transcription factor E3 pseudogene pseudo 327871 Gm12017 - - 11|11 A3.1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100049610 Fmtq20 - - - femur mechanical trait QTL 20 unknown 100416943 Gm18328 - - 9|9 F3 vaccinia related kinase 1 pseudogene pseudo 108168542 XM_017318729 LOC108168542 - - Y A2 Y-linked testis-specific protein 1-like protein-coding 70496 5730406E14Rik - - 12|12 RIKEN cDNA 5730406E14 gene protein-coding 19650 Mm.244671 NM_011249 ENSMUSG00000027641 Rbl1 AW547426|PRB1|p107 - 2 H1|2 78.05 cM RB transcriptional corepressor like 1 protein-coding 621205 Gm6206 EG621205 - X|X D ring finger and WD repeat domain 2 (Rfwd2) pseudogene pseudo 777672 Ighd2-6 Gm16941 - 12|12 F1 immunoglobulin heavy diversity 2-6 other 100042795 2810047C21Rik2 - - 7|7 A1 RIKEN cDNA 2810047C21 gene 2 protein-coding 109280080 LOC109280080 Mm763 - - VISTA enhancer mm763 biological-region 102635574 Gm17196 - - 10|10 22.5 cM predicted gene 17196 ncRNA 105246925 Gm42120 - - 5|5 predicted gene, 42120 ncRNA 102634220 Gm31857 - - 3|3 predicted gene, 31857 ncRNA 102638959 XR_389391 ENSMUSG00000105686 Gm35394 Gm43252 - 5 E3|5 predicted gene, 35394 ncRNA 100043481 Gm4468 - - 15 F1|15 predicted gene 4468 pseudo 111879 Iap3rc4 - - - intracisternal A-type particle, U3 region, SINE repeat c-4 other 433743 Gm12906 - - 4|4 C7 translocase of outer mitochondrial membrane 22 pseudogene pseudo 52044 Mm.394832 D19Ertd744e - - 19 17.63 cM DNA segment, Chr 19, ERATO Doi 744, expressed unknown 100526489 NR_037259 ENSMUSG00000104652 Mir669a-8 mmu-mir-669a-8 - 2 A1|2 8.22 cM microRNA 669a-8 ncRNA 26909 Mm.283046 NM_012012 ENSMUSG00000039748 Exo1 5730442G03Rik|Msa - 1 H4|1 81.9 cM exonuclease 1 protein-coding 27574 D5Buc22 381P13.SP6 - 5 38.44 cM DNA segment, Chr 5, Bucan 22 unknown 57889 AA589488 - - - EST AA589488 unknown 74254 Mm.348649 NM_133756 ENSMUSG00000064037 Gpn1 2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1 - 5|5 B1 GPN-loop GTPase 1 protein-coding 114080 Hpic5 - - 9 16.84 cM haloperidol-induced catelepsy 5 unknown 21758 Tet(5<12>)1Jic - - - tetrasomy, Chr 5 and 12, Central Institute for Experimental Animals, Japan other 73335 Mm.72124 1700047K16Rik - - 11|11 B1.3 RIKEN cDNA 1700047K16 gene ncRNA 105245106 XM_011243239 Gm40600 - - 10 A1|10 predicted gene, 40600 protein-coding 109844 Ly25 Ly-25 - - lymphocyte antigen 25 protein-coding 20207 Saa-ps - - 7 B3|7 serum amyloid A, pseudogene pseudo 319711 Mm.31753 NR_015614 ENSMUSG00000097585 E230029C05Rik AI452102|B230337J15|Gm26529|Gm32094 - 7|7 D3 RIKEN cDNA E230029C05 gene ncRNA 13134 Mm.320593 NM_007826 ENSMUSG00000055639 Dach1 Dac|Dach - 14 E2.1|14 48.25 cM dachshund family transcription factor 1 protein-coding 667676 Gm8756 EG667676 - 13|13 D1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 68039 Mm.22246 NM_026523 ENSMUSG00000025723 Nmb 3110023K12Rik - 7|7 D3 neuromedin B protein-coding 102634883 XR_374357 Gm32360 - - 2 C1.1|2 predicted gene, 32360 ncRNA 70155 Mm.28013 NM_001081079 ENSMUSG00000026158 Ogfrl1 2210417C17Rik - 1|1 A5 opioid growth factor receptor-like 1 protein-coding 15426 Mm.6167 NM_010466 ENSMUSG00000001657 Hoxc8 D130011F21Rik|Hox-3.1 - 15 F3|15 58.05 cM homeobox C8 protein-coding 100039076 Gm2035 - - 12 D2|12 eukaryotic translation initiation factor 1A-like 2 pseudogene pseudo 78236 5330417P21Rik - - - RIKEN cDNA 5330417P21 gene protein-coding 105245169 XR_873108 Gm40659 - - 13 A1|13 predicted gene, 40659 ncRNA 212541 Mm.2965 NM_145383 ENSMUSG00000030324 Rho Noerg1|Opn2|Ops|RP4 - 6 E3|6 53.72 cM rhodopsin protein-coding 28207 D6Wum15 109BL5 - 6 63.44 cM DNA segment, Chr 6, Washington University School of Medicine 15 unknown 102467504 n-TCgca43 n-Tc43 - 6 B2.3|6 nuclear encoded tRNA cysteine 43 (anticodon GCA) tRNA 140641 Fembm3 - - 7 63.44 cM femoral bone morphometry 3 unknown 30941 Mm.27510 NM_013919 ENSMUSG00000053483 Usp21 ESTM28|Usp16|Usp23|W53272 - 1 H3|1 79.3 cM ubiquitin specific peptidase 21 protein-coding 100417714 Gm18777 - - 10|10 B5.1 chromobox homolog 5 pseudogene pseudo 13322 Del(8)44H Del44H - - deletion, Chr 8, Harwell 44 other 669792 Rpl21-ps9 Gm14171 - 2|2 H1 ribosomal protein L21, pseudogene 9 pseudo 258302 Mm.377422 NM_146305 ENSMUSG00000055033 Olfr420 MOR105-10 - 1|1 H3 olfactory receptor 420 protein-coding 102639883 XR_380201 Gm36089 - - 10 A4|10 predicted gene, 36089 ncRNA 100417642 Zbed4-ps2 Gm18732 - 7|7 A1 zinc finger, BED type containing 4, pseudogene 2 pseudo 75352 Mm.60906 NM_023774 ENSMUSG00000046180 4930550L24Rik mage-k1 - X|X A6 RIKEN cDNA 4930550L24 gene protein-coding 100036272 Salpa1 - - 2 62.49 cM serum alkaline phosphatase activity 1 unknown 105246693 XR_878482 Gm41940 - - 1 E2.3|1 predicted gene, 41940 ncRNA 60784 D3Mit41 - - 3 42.32 cM DNA segment, Chr 3, Massachusetts Institute of Technology 41 unknown 56610 D12Mgc1 - - - DNA segment, Chr 12, MRC UK Mouse Genome Centre 1 unknown 108425 Xmmv38 Env-38|Xmmv-38 - - xenotropic-MCF leukemia virus 38 other 105245088 XM_011243062 Gm40587 - - 9 F3|9 predicted gene, 40587 protein-coding 100418355 Gm19159 - - 18|18 E1 branched chain ketoacid dehydrogenase E1, alpha polypeptide pseudogene pseudo 17086 Mm.240231 NM_010746 ENSMUSG00000062524 Ncr1 Ly94|NKp46 - 7|7 A1 natural cytotoxicity triggering receptor 1 protein-coding 668101 Mm.423523 NM_001173460 ENSMUSG00000095028 Sirpb1b - - 3 A1|3 signal-regulatory protein beta 1B protein-coding 223431 Mm.442630 NM_153061 Tiaf2 Tif2 - 15|15 B1 TGF-beta1-induced anti-apoptotic factor 2 unknown 111941 Iap5rc10 - - - intracisternal A-type particle, U5 region, SINE repeat c-10 other 667065 Cyp3a63-ps EG667065|Gm8440 - 5 G2|5 cytochrome P450, family 3, subfamily a, member 63, pseudogene pseudo 102989 AU022052 - - - expressed sequence AU022052 unknown 102639754 Gm28677 - - Y|Y predicted gene 28677 ncRNA 105243872 Gm39600 - - 1 A3|1 predicted gene, 39600 pseudo 105242971 XR_882210 Gm39033 Gm45065 - 7 C|7 predicted gene, 39033 ncRNA 69271 3200001G23Rik - - 5|5 RIKEN cDNA 3200001G23 gene protein-coding 57246 Mm.31452 NM_020496 ENSMUSG00000031965 Tbx20 9430010M06Rik|AL022859|Tbx12 - 9|9 A4 T-box 20 protein-coding 102635323 XR_391454 Gm32694 - - 7 B4|7 predicted gene, 32694 ncRNA 112110 Bgeq3 - - 4 61.67 cM body growth early QTL 3 unknown 100042014 Mm.363890 Gm3625 - - 12 A1.1|12 predicted gene 3625 ncRNA 74133 Mm.23257 NM_024262 ENSMUSG00000020495 Smg8 1200011M11Rik - 11|11 C smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans) protein-coding 21422 Mm.219040 NM_033476 ENSMUSG00000009733 Tfcp2 CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1 - 15 F1|15 56.33 cM transcription factor CP2 protein-coding 109279975 LOC109279975 Mm645 - - VISTA enhancer mm645 biological-region 665655 Gm7733 EG665655 - 3|3 A3 ribosome production factor 2 homolog pseudogene pseudo 66547 Mm.396348 XR_382492 2010203P06Rik - - 13|13 B1 RIKEN cDNA 2010203P06 gene ncRNA 435361 Rpl13-ps2 EG435361|Gm5663 - 13|13 B1 ribosomal protein L13, pseudogene 2 pseudo 102636835 XR_001778914 Gm33795 - - 1 C1.1|1 predicted gene, 33795 ncRNA 100035203 Marq1 - - 5 63.84 cM methamphetamine response QTL 1 unknown 108167791 XR_001779711 Gm46208 - - 10 A1|10 predicted gene, 46208 ncRNA 234344 Mm.334561 NM_001163564 ENSMUSG00000014907 Naf1 Gm174 - 8|8 B3.1 nuclear assembly factor 1 ribonucleoprotein protein-coding 68810 Mm.200188 NM_199465 ENSMUSG00000039103 Nexn 1110046H09Rik|AA553326|NELIN - 3|3 H3 nexilin protein-coding 219149 Mm.32071 NM_173393 ENSMUSG00000035067 Xkr6 2700008G24Rik|BC024502|Xrg6 - 14|14 D1 X-linked Kx blood group related 6 protein-coding 100039072 Gm2033 - - 8 A4|8 predicted gene 2033 pseudo 666944 Gm13188 - - 2|2 A1 predicted gene 13188 pseudo 13346 Mm.6712 NM_010043 ENSMUSG00000026208 Des - - 1 C4|1 38.85 cM desmin protein-coding 104783 AI316808 - - - expressed sequence AI316808 unknown 108168349 XR_001782217 Gm46603 - - 17 A3.3|17 predicted gene, 46603 ncRNA 666881 Gm8343 EG666881 - 9|9 A4 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 319910 Mm.208379 D030028M11Rik - - 9|9 RIKEN cDNA D030028M11 gene protein-coding 12982 Mm.287228 NM_009970 ENSMUSG00000059326 Csf2ra CD116|Csfgmra|GM-CSF-Ra|GM-CSFR - 19 D3|19 56.89 cM colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein-coding 72050 Mm.281714 NM_023645 ENSMUSG00000026047 Kdelc1 1810049A15Rik|5730416C13Rik|EP58|Kdel1 - 1|1 C1.1 KDEL (Lys-Asp-Glu-Leu) containing 1 protein-coding 72564 2700063P09Rik - - 4|4 RIKEN cDNA 2700063P09 gene protein-coding 56581 66M4E12R - - - DNA segment, 66M4E12R unknown 631379 Gm10292 - - 3|3 E1 alkylglycerone phosphate synthase pseudogene pseudo 102634261 XR_376876 Gm31888 - - 5 B3|5 predicted gene, 31888 ncRNA 105242606 XR_868819 Gm38774 - - 6 A3.1|6 predicted gene, 38774 ncRNA 68401 Mm.22385 NM_175935 ENSMUSG00000034793 G6pc3 0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP - 11|11 D glucose 6 phosphatase, catalytic, 3 protein-coding 21405 Mm.332607 NM_009327 ENSMUSG00000029556 Hnf1a AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1 - 5 55.99 cM|5 F HNF1 homeobox A protein-coding 109279965 LOC109279965 Mm451 - - VISTA enhancer mm451 biological-region 100416143 Gm15599 - - 17|17 A1 tubulin, alpha 1B pseudogene pseudo 258011 Olfr184-ps1 MOR0-9P - 16|16 olfactory receptor 184, pseudogene 1 pseudo 19241 Mm.142729 NM_021278 ENSMUSG00000049775 Tmsb4x Ptmb4|Tb4|Tbeta4 - X F5|X 78.28 cM thymosin, beta 4, X chromosome protein-coding 11363 Mm.2445 NM_007381 ENSMUSG00000026003 Acadl AA960361|AU018452|C79855|LCAD - 1 C3|1 33.64 cM acyl-Coenzyme A dehydrogenase, long-chain protein-coding 102640065 XR_389330 Gm36222 - - 5 E2|5 predicted gene, 36222 ncRNA 170786 Mm.32510 NM_133238 ENSMUSG00000031494 Cd209a CD209|CDSIGN|CIRE|DC-SIGN|DC-SIGN1|Dcsign|SIGN-R1|SIGNR5 - 8|8 A1.1 CD209a antigen protein-coding 61754 D4Mit249 - - 4 59.38 cM DNA segment, Chr 4, Massachusetts Institute of Technology 249 unknown 619298 Mm.387787 NM_001033802 G930045G22Rik - - 6|6 B2.3 RIKEN cDNA G930045G22 gene unknown 791281 Mm.484638 Gm10253 - - - predicted gene 10253 unknown 100861623 XM_003688970 ENSMUSG00000095601 Rhox3a2 Gm21085 - X A3.3|X reproductive homeobox 3A2 protein-coding 85308 Mm.40667 NM_033146 ENSMUSG00000022217 Emc9 1500005A01Rik|Cgi112|Fam158a - 14|14 C3 ER membrane protein complex subunit 9 protein-coding 108168355 XR_001782245 Gm46605 - - 17 A1|17 predicted gene, 46605 ncRNA 67771 Mm.288974 NM_026369 ENSMUSG00000008475 Arpc5 5830443F10Rik|p16-Arc - 1|1 G3 actin related protein 2/3 complex, subunit 5 protein-coding 403351 Mm.441572 D430018B14Rik - - - RIKEN cDNA D430018B14 gene protein-coding 102638771 XR_389674 Gm35255 - - 3 A3|3 predicted gene, 35255 ncRNA 217216 Mm.247335 NM_153544 ENSMUSG00000034773 BC030867 - - 11|11 D cDNA sequence BC030867 protein-coding 15403 Mm.222030 NM_010454 ENSMUSG00000043219 Hoxa6 Hox-1.2 - 6 B3|6 25.4 cM homeobox A6 protein-coding 100043740 Gm4617 - - 3|3 G1 prothymosin alpha pseudogene pseudo 270156 Mm.335149 NM_212449 ENSMUSG00000059820 AU019823 Gm639 - 9|9 A5.3 expressed sequence AU019823 protein-coding 76788 Mm.277308 NM_029742 ENSMUSG00000029775 Klhdc10 2410127E18Rik|AI593221|mKIAA0265 - 6|6 A3.3 kelch domain containing 10 protein-coding 100216534 NR_028563 ENSMUSG00000064725 Snord96a U96 - 11 B1.2|11 small nucleolar RNA, C/D box 96A snoRNA 75364 Mm.399358 4930549P19Rik - - - RIKEN cDNA 4930549P19 gene protein-coding 235184 Mm.127892 NM_146222 ENSMUSG00000042138 Msantd2 2810450G17Rik|9530092B10Rik - 9|9 A4 Myb/SANT-like DNA-binding domain containing 2 protein-coding 11826 Mm.18625 NM_007472 ENSMUSG00000004655 Aqp1 CHIP28 - 6 B3|6 27.38 cM aquaporin 1 protein-coding 636544 Gm7180 EG636544 - 7|7 D3 translocase of inner mitochondrial membrane 17a pseudogene pseudo 102639284 XR_390400 Gm35631 - - 4 A1|4 predicted gene, 35631 ncRNA 60845 D5Mit62 - - 5 81.9 cM DNA segment, Chr 5, Massachusetts Institute of Technology 62 unknown 61110 D2Mit480 - - 2 56.65 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 480 unknown 105243344 XR_870548 Gm39292 - - 9 A1|9 predicted gene, 39292 ncRNA 108863623 LOC108863623 - - - Gfi1 +35 kb enhancer biological-region 100093714 Mm.465886 NR_153847 Gm12296 - - 11 B3|11 predicted gene 12296 ncRNA 102467630 n-TCgca37 n-Tc37 - 6 B2.3|6 nuclear encoded tRNA cysteine 37 (anticodon GCA) tRNA 80891 Mm.45173 NM_030707 ENSMUSG00000015852 Fcrls 2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc - 3|3 F1 Fc receptor-like S, scavenger receptor protein-coding 723976 NR_030523 ENSMUSG00000076011 Mir652 Mirn652|miRX|mmu-mir-652 - X F2|X microRNA 652 ncRNA 14387 Mm.4793 NM_008064 ENSMUSG00000025579 Gaa E430018M07Rik - 11 E2|11 83.35 cM glucosidase, alpha, acid protein-coding 102632279 Gm30398 - - 9|9 predicted gene, 30398 ncRNA 102640318 Gm36415 - - 10|10 predicted gene, 36415 protein-coding 665063 Gm7470 EG665063 - 1|1 A1 dipeptidylpeptidase 8 pseudogene pseudo 100043471 Hcfc1r1-ps1 Gm4458 - 17|17 C host cell factor C1 regulator 1 (XPO1-dependent), pseudogene 1 pseudo 330817 Mm.193086 NM_201408 ENSMUSG00000060038 Dhps Dhs - 8|8 C3 deoxyhypusine synthase protein-coding 13331 Del(Y)2Psb Del(Y)(Y-del)|Del(Y)(Y-del)2Psb - - deletion 2, Chr Y, RIII, Paul S Burgoyne other 102640321 XR_386381 Gm36418 - - 18 E3|18 predicted gene, 36418 ncRNA 242785 Mm.22306 NM_001033352 ENSMUSG00000073700 Klhl21 1810045K06Rik|D330008A20|mKIAA0469 - 4|4 E2 kelch-like 21 protein-coding 58210 Mm.116986 NM_026907 ENSMUSG00000039364 Sectm1b 1810003C24Rik|K12|Sectm1 - 11|11 E2 secreted and transmembrane 1B protein-coding 54632 Mm.327529 NM_133991 ENSMUSG00000031171 Ftsj1 AI931847|Ftsj|Ftsjl|Sfc12 - X A1.1|X 3.73 cM FtsJ RNA methyltransferase homolog 1 (E. coli) protein-coding 21908 Mm.391203 NM_021901 ENSMUSG00000025215 Tlx1 Hox-11|Hox11|Tlx-1 - 19 C3|19 38.45 cM T cell leukemia, homeobox 1 protein-coding 16293 In(5)33Rk-p In(5)33Rk|In33Rk - - inversion, Chr 5, Roderick 33, proximal other 278725 Mm.436927 NR_045722 E130310I04Rik A930019C19Rik - 16|16 B3 RIKEN cDNA E130310I04 gene ncRNA 72572 Mm.276650 NM_139140 ENSMUSG00000051934 Spats2 2700012F11Rik|59kDa|Scr59|p59 - 15|15 F1 spermatogenesis associated, serine-rich 2 protein-coding 97908 Mm.261657 NM_145073 ENSMUSG00000099517 Hist1h3g H3.1-221|M32460 - 13|13 A3.1 histone cluster 1, H3g protein-coding 13511 Mm.345891 NM_007883 ENSMUSG00000044393 Dsg2 AA408168|D18Ertd293e - 18 A2|18 11.42 cM desmoglein 2 protein-coding 59035 Mm.178115 NM_021531 ENSMUSG00000032185 Carm1 Prmt4 - 9|9 A3 coactivator-associated arginine methyltransferase 1 protein-coding 102640937 XR_379916 Gm36883 - - 9 F3|9 predicted gene, 36883 ncRNA 105243952 XR_865506 Gm39659 - - 1 C3|1 predicted gene, 39659 ncRNA 75196 Mm.67665 NM_029202 ENSMUSG00000029517 Ankrd7 4930532L20Rik|AV278427 - 6|6 A2 ankyrin repeat domain 7 protein-coding 12613 Mm.236017 NM_009885 ENSMUSG00000026818 Cel 1810036E18Rik|BAL - 2 A3|2 19.38 cM carboxyl ester lipase protein-coding 62636 D14Mit131 - - 14 63.59 cM DNA segment, Chr 14, Massachusetts Institute of Technology 131 unknown 56601 463o20Sp6 - - - DNA segment, 463o20Sp6 unknown 112330 Tria1 - - 11 31.99 cM T cell receptor induced activation 1 unknown 243423 Igkv1-132 EG243423|Gm4965|bi2 - 6|6 C1 immunoglobulin kappa variable 1-132 other 105245288 XR_872043 Gm40764 - - 10 D2|10 predicted gene, 40764 ncRNA 668661 Mm.274492 NM_025880 ENSMUSG00000045411 2410002F23Rik - - 7|7 B3 RIKEN cDNA 2410002F23 gene protein-coding 20969 Mm.2580 NM_011519 ENSMUSG00000020592 Sdc1 AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1 - 12 A1.1|12 3.94 cM syndecan 1 protein-coding 359854 DXMgc4 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 4 unknown 105244824 XR_872642 Gm40361 - - 12 A2|12 predicted gene, 40361 ncRNA 20519 Mm.99252 NM_011395 ENSMUSG00000023828 Slc22a3 EMT|Oct3|Orct3|Slca22a3 - 17 A1|17 8.52 cM solute carrier family 22 (organic cation transporter), member 3 protein-coding 258449 Mm.324601 NM_146457 ENSMUSG00000063780 Olfr282 MOR160-2 - 15|15 F1 olfactory receptor 282 protein-coding 105247013 XR_880718 Gm42197 - - 3 A3|3 predicted gene, 42197 ncRNA 110006 Mm.3317 NM_010368 ENSMUSG00000025534 Gusb AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g - 5 G1.3|5 68.32 cM glucuronidase, beta protein-coding 61995 D8Mit352 - - 8 53.04 cM DNA segment, Chr 8, Massachusetts Institute of Technology 352 unknown 110086 Tcpm1 Tpm1 - - T cell phenotype modifier 1 protein-coding 667822 Gm8832 EG667822 - X|X F5 predicted gene 8832 pseudo 102443351 Mm.292904 NM_011644 ENSMUSG00000070425 Xntrpc Xndr-trpc2 - 7 E2|7 Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough protein-coding 102640706 XR_384343 Gm36710 - - 15 E3|15 predicted gene, 36710 ncRNA 16248 In(14)54Rk In54Rk - - inversion, Chr 14, Roderick 54 other 667722 Gm11485 - - 4|4 C3 ribonucleotide reductase M2 pseudogene pseudo 140494 Mm.462308 NM_080467 ENSMUSG00000038600 Atp6v0a4 Atp6n1b|a4 - 6|6 B1 ATPase, H+ transporting, lysosomal V0 subunit A4 protein-coding 108167651 XR_001779167 Gm46111 - - 9 A5.3|9 predicted gene, 46111 ncRNA 107753 Mm.390793 NM_025622 ENSMUSG00000043501 Lgals2 2200008F12Rik|AI324147 - 15|15 E1 lectin, galactose-binding, soluble 2 protein-coding 102635044 XR_377780 Gm32480 - - 6 C3|6 predicted gene, 32480 ncRNA 100035689 Mskt1 - - - musculoskeletal traits 1 unknown 100316674 NR_130328 ENSMUSG00000080556 Mir467g Mirn467g|mmu-mir-467g - 5 B2|5 17.92 cM microRNA 467g ncRNA 665913 Zscan4-ps2 - - 7|7 A1 zinc finger and SCAN domain containing 4, pseudogene 2 pseudo 61215 D1Mit193 - - 1 56.92 cM DNA segment, Chr 1, Massachusetts Institute of Technology 193 unknown 108167480 Gm46010 - - 7 B1|7 predicted gene, 46010 pseudo 240427 Mm.312871 NM_053099 ENSMUSG00000024548 Setbp1 C130092E12|Seb|mKIAA0437 - 18|18 E3 SET binding protein 1 protein-coding 62893 D10Mit242 - - 10 39.72 cM DNA segment, Chr 10, Massachusetts Institute of Technology 242 unknown 102467527 n-TGccc3 n-Tg3 - 4 A5|4 nuclear encoded tRNA glycine 3 (anticodon CCC) tRNA 111486 Xmmv23 Env-23|Xmmv-23 - - xenotropic-MCF leukemia virus 23 other 102633203 XR_871946 Gm31090 - - 10 C2|10 predicted gene, 31090 ncRNA 105244948 Gm40470 - - 8|8 predicted gene, 40470 ncRNA 108168764 XR_001783322 LOC108168764 - - 2 C1.3 uncharacterized LOC108168764 ncRNA 105247184 XR_881492 Gm42326 - - 4 D3|4 predicted gene, 42326 ncRNA 20656 Mm.290876 NM_013671 ENSMUSG00000006818 Sod2 MnSOD|Sod-2 - 17 A1|17 8.75 cM superoxide dismutase 2, mitochondrial protein-coding 102639661 Gm35919 - - 18 E1|18 predicted gene, 35919 pseudo 67308 Mm.193181 NM_023331 ENSMUSG00000030612 Mrpl46 3110052F15Rik|C15orf4|C80107|LIECG2|P2ECSL - 7|7 D2 mitochondrial ribosomal protein L46 protein-coding 100041004 Gm3090 - - 5 G2|5 predicted gene 3090 protein-coding 68021 Mm.140243 NM_026512 ENSMUSG00000038286 Bphl 2010012D11Rik|5730533B08Rik|AI115341 - 13|13 A3.3 biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) protein-coding 347726 Klra26 Ly49e/c1 - - killer cell lectin-like receptor, subfamily A, member 26 protein-coding 102634748 Mm.247298 XR_380523 Gm32255 - - 10 B5.1|10 predicted gene, 32255 ncRNA 102635298 XR_378155 Gm32675 - - 6 G3|6 predicted gene, 32675 ncRNA 102632886 XR_001778534 Gm30845 - - 8 A2|8 predicted gene, 30845 ncRNA 16151 Mm.12967 NM_010547 ENSMUSG00000004221 Ikbkg 1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO - X|X A7.3 inhibitor of kappaB kinase gamma protein-coding 101113 Mm.295647 NM_133924 ENSMUSG00000050373 Snx21 5730407K14Rik|AI481716 - 2|2 H3 sorting nexin family member 21 protein-coding 230073 Mm.86382 NM_172689 ENSMUSG00000040296 Ddx58 6430573D20Rik|C330021E21|RIG-I|RLR-1 - 4|4 A5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 protein-coding 63831 DXMit20 - - X 75.66 cM DNA segment, Chr X, Massachusetts Institute of Technology 20 unknown 12343 Mm.392504 NM_007604 ENSMUSG00000015733 Capza2 1110053K06Rik|AW208808|Cappa2 - 6 A2|6 7.96 cM capping protein (actin filament) muscle Z-line, alpha 2 protein-coding 494448 Mm.38438 NM_028763 ENSMUSG00000089715 Cbx6 - - 15|15 E1 chromobox 6 protein-coding 24053 Mm.72173 NM_011892 ENSMUSG00000035296 Sgcg 35kDa|5430420E18Rik|AI642964|gamma-SG - 14|14 D1 sarcoglycan, gamma (dystrophin-associated glycoprotein) protein-coding 93687 Mm.26908 NM_146087 ENSMUSG00000024576 Csnk1a1 2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a - 18|18 E1 casein kinase 1, alpha 1 protein-coding 319446 Mm.248357 NM_176913 ENSMUSG00000053687 Dpep2 F630103D06Rik|MBD-2 - 8|8 D3 dipeptidase 2 protein-coding 105245492 XR_873370 Gm40940 - - 13 A5|13 predicted gene, 40940 ncRNA 666548 Gm8158 EG666548 - 10|10 C1 predicted gene 8158 pseudo 105247634 LOC105247634 - - - uncharacterized LOC105247634 ncRNA 624165 Gm6477 EG624165 - 10|10 B1 nucleophosmin 1 pseudogene pseudo 78739 Mm.417032 NR_131013 ENSMUSG00000108030 9530062K07Rik - - 6|6 E3 RIKEN cDNA 9530062K07 gene ncRNA 102640074 Mm.412957 NR_152767 Gm36229 - - 10 B3|10 predicted gene, 36229 ncRNA 100035015 Noan1 - - 2 39.24 cM nitrous oxide antinociception 1 unknown 100038661 Gm10192 - - - predicted gene 10192 protein-coding 258729 NM_146734 ENSMUSG00000094426 Olfr478 GA_x6K02T2PBJ9-10361879-10360935|MOR204-13 - 7|7 E3 olfactory receptor 478 protein-coding 100043240 Gm15583 - - 1 F|1 predicted gene 15583 protein-coding 20170 Mm.101110 NM_176785 ENSMUSG00000074811 Hps6 5330434M19Rik|BLOC2|ru - 19 C3|19 38.75 cM HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 protein-coding 105246943 Gm42137 - - 5|5 predicted gene, 42137 ncRNA 15155 Hc6 Cen6 - - heterochromatin, Chr 6 other 100041724 Mm.383311 NM_001099324 ENSMUSG00000079261 Gm15217 - - 14|14 C1 predicted gene 15217 ncRNA 61177 D18Mit21 - - 18 8.85 cM DNA segment, Chr 18, Massachusetts Institute of Technology 21 unknown 258254 Olfr1516-ps MOR111-2|Olfr1516 - 10|10 olfactory receptor 1516, pseudogene pseudo 108037 Mm.29890 NM_028230 ENSMUSG00000025403 Shmt2 2700043D08Rik|AA408223|AA986903|SHMT - 10|10 D3 serine hydroxymethyltransferase 2 (mitochondrial) protein-coding 93703 Mm.247203 NM_033578 ENSMUSG00000103088 Pcdhgb6 - - 18|18 B3 protocadherin gamma subfamily B, 6 protein-coding 214899 Mm.404761 NM_145997 ENSMUSG00000030180 Kdm5a AA409370|C76986|Jarid1a|RBP2|Rbbp2 - 6 F1|6 56.95 cM lysine (K)-specific demethylase 5A protein-coding 104087 Dre - - - dominant reduced ear unknown 110804 Sod1m Msod1 - - superoxide dismutase 1, soluble, modifier protein-coding 434797 Mm.391298 NM_001099302 ENSMUSG00000079534 Gm5640 EG434797 - X|X A7.3 predicted gene 5640 protein-coding 100040872 Gm3014 - - 8 B3.1|8 predicted gene 3014 unknown 100041440 Gm20874 - - Y|Y predicted gene, 20874 protein-coding 73178 Mm.1574 NM_028459 ENSMUSG00000029684 Wasl 2900021I12Rik|3110031I02Rik|N-WASP - 6|6 A3.1 Wiskott-Aldrich syndrome-like (human) protein-coding 666541 Gm8155 EG666541 - 10|10 A1 copine III pseudogene pseudo 217140 Mm.46189 NM_146027 ENSMUSG00000020877 Scrn2 AV001119|D11Moh48|SES2 - 11 D|11 60.62 cM secernin 2 protein-coding 226118 Mm.371690 NM_183215 AI606181 D330002H16Rik - 19|19 C3 expressed sequence AI606181 unknown 105244461 XR_867346 Gm40066 - - 3 E1|3 predicted gene, 40066 ncRNA 100417514 XM_006502557 ENSMUSG00000074206 Adh6b Adh5b - 3|3 G3 alcohol dehydrogenase 6B (class V) protein-coding 102633119 Mm.417644 XR_375669 ENSMUSG00000106577 Gm31026 - - 3 C|3 predicted gene, 31026 ncRNA 105246256 XR_876739 Gm41564 - - 17 B1|17 predicted gene, 41564 ncRNA 14531 Mm.1400 NM_008103 ENSMUSG00000023333 Gcm1 GCMa|Gcm-rs2|Gcm1-rs1|glide - 9 E1|9 43.49 cM glial cells missing homolog 1 protein-coding 11782 Mm.386749 NM_021710 ENSMUSG00000020955 Ap4s1 AI314282 - 12|12 B3 adaptor-related protein complex AP-4, sigma 1 protein-coding 104795666 NR_128565 ENSMUSG00000093246 Gm24572 Mir3618|mmu-mir-3618 - 16|16 A3 predicted gene, 24572 ncRNA 102467374 n-TSaga7 n-Ts7 - 13 A3.1|13 nuclear encoded tRNA serine 7 (anticodon AGA) tRNA 102641523 Gm37108 - - 1 A1|1 predicted gene, 37108 pseudo 666893 Vmn1r-ps17 EG666893|Gm8351 - 6|6 B3 vomeronasal 1 receptor, pseudogene 17 pseudo 102637611 XR_389256 Gm34375 - - 4 D3|4 predicted gene, 34375 ncRNA 13390 Mm.475101 NM_010053 ENSMUSG00000041911 Dlx1 Dlx|Dlx-1 - 2 C2|2 42.61 cM distal-less homeobox 1 protein-coding 62645 D14Mit156 - - - DNA segment, Chr 14, Massachusetts Institute of Technology 156 unknown 100035280 Cafcnq1 - - 2 24.51 cM cobblestone area-forming cell number QTL 1 unknown 13972 Mm.236139 NM_023120 ENSMUSG00000000884 Gnb1l ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf - 16 A3|16 11.46 cM guanine nucleotide binding protein (G protein), beta polypeptide 1-like protein-coding 20408 Mm.736 NM_017400 ENSMUSG00000030638 Sh3gl3 EEN-B2|SH3P13|Sh3d2c|Sh3d2c2 - 7 D3|7 47.15 cM SH3-domain GRB2-like 3 protein-coding 258850 Mm.334007 NM_146851 ENSMUSG00000059319 Olfr295 MOR220-1 - 7|7 D3 olfactory receptor 295 protein-coding 18598 Mm.4223 NM_008811 ENSMUSG00000047674 Pdha2 Pdhal - 3|3 H1 pyruvate dehydrogenase E1 alpha 2 protein-coding 53618 Mm.35628 NM_016893 ENSMUSG00000021065 Fut8 - - 12|12 C3 fucosyltransferase 8 protein-coding 667511 Gm8676 EG667511 - 6|6 A1 SET pseudogene pseudo 12704 Mm.8321 NM_007708 ENSMUSG00000029516 Cit C030025P15Rik|CRIK|CRIK-SK|Cit-k - 5|5 F citron protein-coding 666876 Gm13503 - - 2|2 C1.1 predicted gene 13503 pseudo 228136 Mm.288508 NM_144887 ENSMUSG00000034075 Zdhhc5 1110032A17Rik|AI451382|Zisp - 2|2 D zinc finger, DHHC domain containing 5 protein-coding 100038969 Rps12-ps18 Gm14958 - X E3|X ribosomal protein S12, pseudogene 18 pseudo 102632743 XR_375660 Gm30735 Gm43565 - 3 C|3 predicted gene, 30735 ncRNA 110238 Igh-Sa5 - - - immunoglobulin heavy chain Sa5 other 116882 Pgia7 - - 11 42.99 cM proteoglycan induced arthritis 7 unknown 213474 Gm4784 EG213474 - X|X D eukaryotic translation initiation factor 4B pseudogene pseudo 73301 Mm.61243 NM_183096 ENSMUSG00000037101 Ttc29 1700031F13Rik - 8|8 C1 tetratricopeptide repeat domain 29 protein-coding 102634768 Gm32272 - - 7|7 predicted gene, 32272 protein-coding 27998 Mm.27853 NM_138586 ENSMUSG00000061286 Exosc5 D7Wsu180e - 7 A3|7 13.96 cM exosome component 5 protein-coding 102640532 Gm14652 - - X A4|X 24.35 cM predicted gene 14652 pseudo 106315 AU015849 - - - expressed sequence AU015849 protein-coding 73483 1700074A11Rik - - 2|2 RIKEN cDNA 1700074A11 gene protein-coding 71089 Mm.87382 NM_027669 ENSMUSG00000022542 Sept12 1700028G04Rik|4933413B09Rik|Septin12 - 16|16 A1 septin 12 protein-coding 624277 Gm6490 - - 14|14 B predicted gene 6490 pseudo 62665 D15Mit126 - - 15 13.74 cM DNA segment, Chr 15, Massachusetts Institute of Technology 126 unknown 104184 Mm.399785 NM_178645 ENSMUSG00000020840 Blmh AI035728|Bh|Bmh - 11|11 B5 bleomycin hydrolase protein-coding 640017 Gm20768 - - 5|5 predicted gene, 20768 pseudo 108168804 XR_001783503 Gm46770 - - 2 G3|2 predicted gene, 46770 ncRNA 66973 Mm.29484 NM_025878 ENSMUSG00000024436 Mrps18b 2400002C15Rik|MRP-S18-2|S18mt-b - 17|17 B1 mitochondrial ribosomal protein S18B protein-coding 217109 Mm.379350 NM_001013375 ENSMUSG00000054079 Utp18 6230425C22Rik|6430513M13|Wdr50 - 11|11 D UTP18 small subunit processome component protein-coding 619310 Mm.335016 NM_001033813 ENSMUSG00000074472 Zfp872 9530015I07Rik - 9|9 A3 zinc finger protein 872 protein-coding 110942 Kcna1-rs1 - - - potassium voltage-gated channel, shaker-related subfamily, member 1, related sequence 1 protein-coding 66350 Mm.151951 NM_023196 ENSMUSG00000027999 Pla2g12a 2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1 - 3|3 G3 phospholipase A2, group XIIA protein-coding 100043652 Gm14497 - - 2|2 H1 predicted gene 14497 pseudo 493141 Marif1 - - - macrophage-associated risk inflammatory factor 1 unknown 97232 Mm.417212 C78283 - - - expressed sequence C78283 protein-coding 258522 Mm.377550 NM_146529 ENSMUSG00000049372 Olfr1183 MOR230-6 - 2|2 D olfactory receptor 1183 protein-coding 359905 DXMgc54 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 54 unknown 667774 Gm8804 EG667774 - 8|8 D3 microtubule-associated protein, RP/EB family, member 1 pseudogene pseudo 105246983 XR_880616 Gm42171 - - X A2|X predicted gene, 42171 ncRNA 234329 Mm.28010 NM_153097 ENSMUSG00000053490 Trim60 2czf45|Rnf33 - 8|8 B3.1 tripartite motif-containing 60 protein-coding 69401 Mm.34841 NM_027072 ENSMUSG00000059455 Plac8l1 1700009N18Rik|1700015M15Rik - 18|18 B3 PLAC8-like 1 protein-coding 102635070 XR_383908 Gm32499 - - 15 B3.1|15 predicted gene, 32499 ncRNA 74481 Mm.159219 NM_028967 ENSMUSG00000039699 Batf2 B-ATF-2 - 19|19 A basic leucine zipper transcription factor, ATF-like 2 protein-coding 100043388 Scgb1b17 Abpa17|Gm4406 - 7 B1|7 secretoglobin, family 1B, member 17 protein-coding 102791 Mm.24670 NM_133986 ENSMUSG00000039461 Tcta 9130410M22Rik|AW553637|C85065|Tctal - 9 F1|9 59.2 cM T cell leukemia translocation altered gene protein-coding 61863 D1Mit366 - - 1 52.38 cM DNA segment, Chr 1, Massachusetts Institute of Technology 366 unknown 637776 NM_001362112 Zfp977 EG637776|Gm7221 - 7|7 B3 zinc finger protein 977 protein-coding 102635913 Gm33128 - - 18|18 predicted gene, 33128 ncRNA 53669 D8Fcr1 Psx-8 - - DNA segment, Chr 8, Frederick Cancer Research Center 1 unknown 100042606 Gm3926 - - 13|13 C1 splicing factor 3a, subunit 2 pseudogene pseudo 73428 1700058M10Rik - - 8|8 RIKEN cDNA 1700058M10 gene protein-coding 639644 Gm7275 EG639644 - 16 B5|16 predicted gene 7275 pseudo 100035157 Idd16.2 Idd16b - - insulin dependent diabetes susceptibility 16.2 unknown 100418327 Gm16353 - - 9|9 D branched chain ketoacid dehydrogenase E1, beta polypeptide pseudogene pseudo 100125245 Vmn2r-ps116 - - 17 A3.2|17 vomeronasal 2, receptor, pseudogene 116 pseudo 100038487 Mm.483537 Gm10629 - - - predicted gene 10629 unknown 19305 Mm.22418 NM_008995 ENSMUSG00000005069 Pex5 AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306 - 6 F2|6 59.15 cM peroxisomal biogenesis factor 5 protein-coding 102467575 n-TMcat6 n-Tm6 - 13 A3.1|13 nuclear encoded tRNA methionine 6 (anticodon CAT) tRNA 102635993 XR_376137 Gm33189 - - 3 H1|3 predicted gene, 33189 ncRNA 61625 D8Mit264 - - 8 40.62 cM DNA segment, Chr 8, Massachusetts Institute of Technology 264 unknown 623678 Gm14653 EG623678 - X|X A4 predicted gene 14653 protein-coding 102638648 Gm17450 - - 13 C3|13 46.82 cM predicted gene, 17450 pseudo 237979 Mm.130504 NM_172800 ENSMUSG00000041592 Sdk2 4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514 - 11|11 E2 sidekick cell adhesion molecule 2 protein-coding 545339 Mm.275266 Gm5831 - - 9 A5.1|9 Sp140 nuclear body protein family member pseudogene pseudo 18146 Mm.1131 NM_008721 ENSMUSG00000015094 Npdc1 AI314472|NPDC-1 - 2|2 A3 neural proliferation, differentiation and control 1 protein-coding 102637944 XR_386034 Gm34630 - - 18 A1|18 predicted gene, 34630 ncRNA 66183 Mm.45481 NM_133675 ENSMUSG00000043461 Sptssb 1110032A04Rik|ADMP|Sssptb - 3|3 E2 serine palmitoyltransferase, small subunit B protein-coding 53686 D9Hrb1 D9Ham1 - - DNA segment, Chr 9, Harbers 1 unknown 108317 Mlv1 Mlv-1 - - murine leukemia virus 1 other 102631827 XR_379200 Gm30066 - - 9 A4|9 predicted gene, 30066 ncRNA 102632190 XR_388053 Gm30330 - - 8 E1|8 predicted gene, 30330 ncRNA 207667 Mm.36349 NM_172446 ENSMUSG00000022245 Skor1 AV273001|C230094B15Rik|Corl1|Lbxcor1 - 9|9 B SKI family transcriptional corepressor 1 protein-coding 54670 Mm.270043 NM_001001488 ENSMUSG00000039529 Atp8b1 AI451886|FIC1|Ic - 18|18 E1 ATPase, class I, type 8B, member 1 protein-coding 381629 Mm.28144 NM_027855 ENSMUSG00000013622 Atraid 0610007C21Rik|AI316792|Apr3|HSPC013|p18 - 5|5 B1 all-trans retinoic acid induced differentiation factor protein-coding 664793 Mm.410565 NR_027813 ENSMUSG00000113593 Zp4-ps EG664793|Zp4|Zpb - 13|13 A1 zona pellucida glycoprotein 4, pseudogene pseudo 791378 Mm.350576 NR_033584 ENSMUSG00000110541 Gm10280 - - 8 E1|8 predicted gene 10280 ncRNA 100418257 Gm19103 - - 19|19 A proteasome (prosome, macropain) subunit, alpha type 3 pseudogene pseudo 100418217 Gm12989 - - 4|4 D3 proteasome (prosome, macropain) subunit, alpha type 5 pseudogene pseudo 77440 9430087N24Rik - - 15|15 RIKEN cDNA 9430087N24 gene protein-coding 433432 Gm13624 - - 2|2 C2 predicted gene 13624 pseudo 102631854 XR_879342 Gm30081 - - 8 E2|8 predicted gene, 30081 ncRNA 100417173 Gm14609 - - X|X A4 crumbs homolog 1 pseudogene pseudo 62112 D12Mit74 - - 12 30.34 cM DNA segment, Chr 12, Massachusetts Institute of Technology 74 unknown 667876 Gm8855 EG667876 - X|X C1 prohibitin pseudogene pseudo 107786 Bmfr2 Bmfr-2|bmf-1 - - B cell maturation factor responsiveness 2 protein-coding 105245927 XR_875176 Gm41305 - - 15 B3.1|15 predicted gene, 41305 ncRNA 100035841 Adbg1 - - - adult body growth 1 unknown 102634669 Gm32201 - - 1|1 predicted gene, 32201 ncRNA 382626 Gm5186 EG382626 - 12|12 E armadillo repeat containing 10 pseudogene pseudo 72820 2810461L16Rik - - 2|2 RIKEN cDNA 2810461L16 gene protein-coding 61183 D19Mit29 - - 19 4.22 cM DNA segment, Chr 19, Massachusetts Institute of Technology 29 unknown 16190 Mm.233802 NM_010557 ENSMUSG00000030748 Il4ra CD124|Il4r - 7 F3|7 68.94 cM interleukin 4 receptor, alpha protein-coding 110120365 LOC110120365 - - - VISTA enhancer mm111 biological-region 212439 Mm.268547 NM_177604 ENSMUSG00000042510 AA986860 E030025M07|Sarg - 1|1 E4 expressed sequence AA986860 protein-coding 61116 D2Mit492 - - 2 73.4 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 492 unknown 71724 Mm.20108 NM_023617 ENSMUSG00000064294 Aox3 1200011D03Rik|AI326299|Aoh1|Aoh2 - 1 C1.3|1 28.96 cM aldehyde oxidase 3 protein-coding 100041437 Gm3338 - - 13 B3|13 predicted gene 3338 pseudo 208169 Mm.277437 NM_198106 ENSMUSG00000033210 Slc9c1 Gm610|NHE-10|Slc9a10|sNHE|spermNHE - 16|16 B5 solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 protein-coding 751538 NR_030450 ENSMUSG00000076065 Mir681 Mirn681|mmu-mir-681 - 12 C2|12 microRNA 681 ncRNA 72358 Mm.251864 2210411A11Rik AI450237 - 9|9 RIKEN cDNA 2210411A11 gene protein-coding 110120371 LOC110120371 - - - VISTA enhancer mm790 biological-region 320123 D130056L21Rik - - 2|2 RIKEN cDNA D130056L21 gene protein-coding 667240 Mm.480259 NM_001166741 ENSMUSG00000094680 Vmn1r121 EG667240|Gm8533 - 7|7 A3 vomeronasal 1 receptor 121 protein-coding 105244844 XM_011241550 Gm40378 - - 6 C1|6 predicted gene, 40378 protein-coding 673652 LOC673652 - - - NHP2-like protein 1 pseudogene pseudo 17744 TrnT - - - tRNA tRNA 58175 Mm.103771 NM_021374 ENSMUSG00000002459 Rgs20 2900073E09Rik|Rgsz1 - 1|1 A1 regulator of G-protein signaling 20 protein-coding 111058 Hsp86-ps1 86kDa|Hsp86-2|Hsp90 - - heat shock protein 86, pseudogene 1 pseudo 19521 Rb(3.14)7Tu Rb7Tu - - Robertsonian translocation, Chr 3 and 14, Tubingen 7 other 272714 XR_002343 Gm5067 EG272714 - 5 B1|5 predicted gene 5067 unknown 12151 Mm.289584 NM_007552 ENSMUSG00000026739 Bmi1 AW546694|Bmi-1|Pcgf4 - 2 A3|2 12.9 cM Bmi1 polycomb ring finger oncogene protein-coding 66503 Mm.443331 NR_045798 ENSMUSG00000097101 1810034E14Rik - - 13|13 B3 RIKEN cDNA 1810034E14 gene ncRNA 636450 Gm15596 EG636450 - 6 A2|6 NSA2 ribosome biogenesis homolog pseudogene pseudo 93765 Mm.371667 NM_080560 ENSMUSG00000074781 Ube2n 1500026J17Rik|AL022654|BB101821|UBC13 - 10|10 C2 ubiquitin-conjugating enzyme E2N protein-coding 100504547 Gm20281 - - 1|1 49.26 cM LYR motif-containing protein 2-like pseudo 15510 Mm.1777 NM_010477 ENSMUSG00000025980 Hspd1 60kDa|CPN60|HSP-60|HSP-65|Hsp60 - 1|1 C1.2 heat shock protein 1 (chaperonin) protein-coding 666772 Gm8281 100041721|EG666772|Gm3483 - 14|14 A1 predicted pseudogene 8281 pseudo 52734 D13Uth9e - - - DNA segment, Chr 13, University of Utah, expressed 9 unknown 27614 D0Hgu5 - - - DNA segment, Human Genetics Unit 5 unknown 12045 Mm.479217 NM_007534 ENSMUSG00000089929 Bcl2a1b A1-b - 9|9 E3.1 B cell leukemia/lymphoma 2 related protein A1b protein-coding 668511 Ighv1-30 Gm17539 - 12|12 F2 immunoglobulin heavy variable 1-30 pseudo 102631819 XR_388739 Gm30060 - - 11 B3|11 predicted gene, 30060 ncRNA 108168928 XR_001784237 Gm46843 - - 4 A1|4 predicted gene, 46843 ncRNA 20928 Mm.35670 NM_011511 ENSMUSG00000030249 Abcc9 AI414027|AI449286|SUR2A|SUR2B|Sur2 - 6 G2|6 74.35 cM ATP-binding cassette, sub-family C (CFTR/MRP), member 9 protein-coding 110736 Idd18 - - - insulin dependent diabetes susceptibility 18 protein-coding 76815 Mm.296049 NM_029755 ENSMUSG00000006056 Calcoco2 2410154J16Rik|C77254|Ndp52|Ndp52l1 - 11 D|11 59.4 cM calcium binding and coiled-coil domain 2 protein-coding 66684 Mm.182094 NM_025703 ENSMUSG00000051579 Tceal8 3930402F23Rik - X|X F1 transcription elongation factor A (SII)-like 8 protein-coding 102639395 XR_380585 Gm35721 - - 10 C1|10 predicted gene, 35721 ncRNA 108167332 XM_011241543 Gm45943 - - 6 B3|6 predicted gene, 45943 protein-coding 406176 Mm.356219 NM_207664 ENSMUSG00000110526 Olfr151 M71|MOR171-2 - 9|9 A4 olfactory receptor 151 protein-coding 59079 Mm.277354 NM_021563 ENSMUSG00000021709 Erbin 1700028E05Rik|Erbb2ip|mKIAA1225 - 13|13 D1 Erbb2 interacting protein protein-coding 21645 Mm.491193 NM_013688 ENSMUSG00000023949 Tcte1 D17Sil1|Tcte-1 - 17 B3|17 22.54 cM t-complex-associated testis expressed 1 protein-coding 76260 Mm.282660 NM_029553 ENSMUSG00000021013 Ttc8 0610012F22Rik|AV001447|BBS8 - 12|12 E tetratricopeptide repeat domain 8 protein-coding 100043108 Mm.482331 NM_001104525 ENSMUSG00000092008 Cyp2c69 AI098658 - 19|19 C3 cytochrome P450, family 2, subfamily c, polypeptide 69 protein-coding 61962 D8Mit291 - - 8 19.01 cM DNA Segment, Chr 8, Massachusetts Institute of Technology 291 unknown 107626 Mm.486144 NM_001199212 ENSMUSG00000093806 Asmt Hiomt - X F5|X acetylserotonin O-methyltransferase protein-coding 670880 XM_006514349 Gm9507 - - 10 C1|10 predicted gene 9507 protein-coding 100303731 Mm.392433 Gm10874 - - 5|5 predicted gene 10874 unknown 20044 Mm.43778 NM_020600 ENSMUSG00000024608 Rps14 2600014J02Rik|AL023078 - 18 E1|18 34.4 cM ribosomal protein S14 protein-coding 61404 D5Mit165 - - 5 72.31 cM DNA segment, Chr 5, Massachusetts Institute of Technology 165 unknown 102632946 XR_391631 Gm30892 - - 7 D2|7 predicted gene, 30892 ncRNA 751529 NR_030465 ENSMUSG00000076218 Mir692-1 Mirn692-1|mir-692-1 - 17 A1|17 microRNA 692-1 ncRNA 102635704 Mm.54293 Gm32975 - - 8|8 predicted gene, 32975 ncRNA 13301 Del(2)59H Del59H - - deletion, Chr 2, Harwell 59 other 68659 Mm.427274 NM_133187 ENSMUSG00000027955 Fam198b 1110032E23Rik|2210419I08Rik|AV011458|Ened - 3|3 E3 family with sequence similarity 198, member B protein-coding 102640571 Gm36605 - - 13|13 predicted gene, 36605 ncRNA 102632781 XR_386088 Gm30765 - - 18 A1|18 predicted gene, 30765 ncRNA 102162 Mm.291777 NM_133966 ENSMUSG00000038697 Taf5l 1110005N04Rik|AI849020 - 8|8 E2 TATA-box binding protein associated factor 5 like protein-coding 382876 Gm5205 EG382876 - 14|14 B glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 100504043 Gm17529 - - 12|12 25.97 cM predicted gene, 17529 ncRNA 85109 D13Mit80 - - 13 3.6 cM DNA segment, Chr 13, Massachusetts Institute of Technology 80 unknown 100035331 Nilac8 - - 14 31.52 cM nicotine induced locomotor activity 8 unknown 100124461 NR_030540 ENSMUSG00000077881 Mir882 Mirn882|mmu-mir-882 - 12 F1|12 microRNA 882 ncRNA 102633678 Gm31444 - - X|X predicted gene, 31444 protein-coding 69032 Mm.33351 NM_026915 ENSMUSG00000032530 Lyzl4 1810009N24Rik|AI504271|Lyc4|Lyza - 9|9 F4 lysozyme-like 4 protein-coding 100504687 Mm.26072 NR_045295 ENSMUSG00000096995 2810029C07Rik AU017849 - 12|12 F1 RIKEN cDNA 2810029C07 gene ncRNA 432611 Mm.212764 NM_001034878 ENSMUSG00000034706 Dnaic2 C030015H18Rik|Dnai2|Gm728|b2b3405Clo - 11|11 E2 dynein, axonemal, intermediate chain 2 protein-coding 320415 Mm.86373 NM_177157 ENSMUSG00000046814 Gchfr 2010323F13Rik|GFRP|P35 - 2|2 E5 GTP cyclohydrolase I feedback regulator protein-coding 102640233 Gm36350 - - 5|5 predicted gene, 36350 ncRNA 552908 Mm.438548 LOC552908 - - - uncharacterized LOC552908 unknown 224129 Mm.41137 NM_001012765 ENSMUSG00000022840 Adcy5 AW121902|Ac5 - 16|16 B3 adenylate cyclase 5 protein-coding 102632061 XR_386779 Gm30234 - - 19 D2|19 predicted gene, 30234 ncRNA 71308 4933430H06Rik - - 5|5 RIKEN cDNA 4933430H06 gene protein-coding 100126461 Trav15n-3 - - 14|14 C2 T cell receptor alpha variable 15N-3 pseudo 112359 Nidd6 - - 1 65.11 cM non-insulin-dependent diabetes mellitus 6 unknown 17449 Mm.212703 NM_008618 ENSMUSG00000020321 Mdh1 B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2 - 11 A3.1|11 13.89 cM malate dehydrogenase 1, NAD (soluble) protein-coding 319819 Mm.50754 NM_177008 ENSMUSG00000062391 4932435O22Rik - - 11|11 E2 RIKEN cDNA 4932435O22 gene ncRNA 110666 Tel17p - - - telomeric sequence, Chr 17, centromere end protein-coding 74111 Mm.41022 NM_028762 ENSMUSG00000029594 Rbm19 1200009A02Rik|AV302714|NPO - 5|5 F RNA binding motif protein 19 protein-coding 102634774 Gm32277 - - 9|9 predicted gene, 32277 ncRNA 102635479 XR_376657 Gm32807 - - 4 D2.2|4 predicted gene, 32807 ncRNA 105245271 XR_871981 Gm40749 - - 10 C3|10 predicted gene, 40749 ncRNA 493073 Lith8 - - 4 57.76 cM lithogenic gene 8 unknown 61146 D4Mit1006 DXMit215 - 4 23.73 cM DNA Segment, Chr 4, Massachusetts Institute of Technology 1006 unknown 102467234 n-TAagc17 n-Ta17 - 13 A3.1|13 nuclear encoded tRNA alanine 17 (anticodon AGC) tRNA 105244695 XR_868177 Gm12958 - - 4 D2.2|4 62.1 cM predicted gene 12958 ncRNA 102635335 XR_001784962 Gm32701 - - 5 G1.1|5 predicted gene, 32701 ncRNA 73504 Mm.9277 NR_045444 ENSMUSG00000090307 1700071M16Rik - - 17|17 B3 RIKEN cDNA 1700071M16 gene ncRNA 100038551 Mm.483533 Gm10757 - - - predicted gene 10757 unknown 107771 Mm.330057 NM_023326 ENSMUSG00000049086 Bmyc 2900002K07Rik|AW060705|Mycb - 2|2 A3 brain expressed myelocytomatosis oncogene protein-coding 102635225 XR_378154 Gm15499 - - 6 G3|6 77.42 cM predicted gene 15499 ncRNA 552873 LOC552873 - - - uncharacterized LOC552873 unknown 217588 Mm.25656 NM_145442 ENSMUSG00000021028 Mbip 4933408E06Rik - 12|12 C1 MAP3K12 binding inhibitory protein 1 protein-coding 76760 1810044K17Rik - - 16|16 RIKEN cDNA 1810044K17 gene protein-coding 110858 Evi5-rs2 - - - ecotropic viral integration site 5 related sequence 2 protein-coding 110784 Mm.324393 NM_001083906 ENSMUSG00000031618 Nr3c2 MR|Mlr - 8 C1|8 36.34 cM nuclear receptor subfamily 3, group C, member 2 protein-coding 110848 Ahcy-rs1 - - - S-adenosylhomocysteine hydrolase, related sequence 1 protein-coding 268822 Mm.181624 NM_172960 ENSMUSG00000022550 Adck5 A230108P17 - 15|15 D3 aarF domain containing kinase 5 protein-coding 102632418 XR_387801 Gm30494 - - 8 C1|8 predicted gene, 30494 ncRNA 111521 Pmv29 Pmv-29 - - polytropic murine leukemia virus 29 other 100303746 NR_028479 Snora20 MBI-125 - 17|17 A1 small nucleolar RNA, H/ACA box 20 snoRNA 102640077 XR_386053 Gm36232 - - 18 A1|18 predicted gene, 36232 ncRNA 102634701 XR_377775 Gm32223 - - 6 C3|6 predicted gene, 32223 ncRNA 108601 Iap3ra15 - - - intracisternal A-type particle, U3 region, SINE repeat a-15 other 67155 Mm.491146 NM_011416 ENSMUSG00000024921 Smarca2 2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm - 19 C1|19 21.17 cM SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 97103 C85601 - - - expressed sequence C85601 unknown 71096 Mm.336395 NM_027671 ENSMUSG00000025909 Sntg1 4933426D16Rik|G1SYN|SYN4 - 1|1 A1-A2 syntrophin, gamma 1 protein-coding 100502895 Gm19439 - - 3|3 38.78 cM predicted gene, 19439 ncRNA 74104 Mm.28663 NM_023732 ENSMUSG00000026198 Abcb6 1200005B17Rik - 1|1 C4 ATP-binding cassette, sub-family B (MDR/TAP), member 6 protein-coding 70656 5730526G10Rik - - 12|12 RIKEN cDNA 5730526G10 gene protein-coding 20742 Mm.123110 NM_009260 ENSMUSG00000020315 Sptbn1 9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049 - 11 A3.3|11 17.44 cM spectrin beta, non-erythrocytic 1 protein-coding 624446 Gm6505 EG624446 - 3|3 A3 predicted pseudogene 6505 pseudo 50877 Mm.103703 NM_016720 ENSMUSG00000035239 Neu3 - - 7|7 E1 neuraminidase 3 protein-coding 102465150 NR_105750 ENSMUSG00000099311 Mir6244 Gm27368|mmu-mir-6244 - 9|9 A5.3 microRNA 6244 ncRNA 71994 Mm.275555 NM_028044 ENSMUSG00000053931 Cnn3 1600014M03Rik|C85854|Calpo3 - 3|3 G1 calponin 3, acidic protein-coding 100416950 Gm18332 - - 2|2 F1 Brca1 associated protein 1 pseudogene pseudo 110114 Cxv2 Cxv-2|XenCSA - - control of xenotropic virus 2 protein-coding 666212 Gm11380 - - 13|13 A3.2 predicted gene 11380 pseudo 100049596 Fmtq15 - - - femur mechanical trait QTL 15 unknown 100034898 Imgt1 Igt-1 - 6 6.68 cM impaired glucose tolerance 1 unknown 100416444 Gm18115 - - 12|12 A3 ribosomal protein S3A pseudogene pseudo 105244241 XR_001783415 Gm39884 - - 2 E1|2 predicted gene, 39884 ncRNA 100045026 Mm.462686 NM_001039241 LOC100045026 - - 17|17 butyrophilin-like protein-coding 71375 Mm.341972 NM_183186 ENSMUSG00000033713 Foxn3 5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1 - 12|12 E forkhead box N3 protein-coding 105246635 XR_878162 Gm41897 - - X C3|X predicted gene, 41897 ncRNA 27898 D16Ium67 - - 16 36.36 cM DNA segment, Chr 16, Indiana University Medical 67 unknown 13204 Mm.993 NM_007839 ENSMUSG00000029169 Dhx15 DBP1|DEAH9|Ddx15|HRH2|mDEAH9 - 5|5 C1 DEAH (Asp-Glu-Ala-His) box polypeptide 15 protein-coding 217316 Mm.25773 NM_001080934 ENSMUSG00000045775 Slc16a5 A130015N09Rik|MCT 5|MCT 6|MCT5 - 11|11 E2 solute carrier family 16 (monocarboxylic acid transporters), member 5 protein-coding 56484 Mm.338613 NM_019740 ENSMUSG00000048756 Foxo3 1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a - 10 B2|10 22.79 cM forkhead box O3 protein-coding 320765 Mm.396773 9630045H20Rik - - 11|11 RIKEN cDNA 9630045H20 gene protein-coding 108168359 XR_001782285 Gm46609 - - 17 E4|17 predicted gene, 46609 ncRNA 237459 Mm.217404 NM_146239 ENSMUSG00000020015 Cdk17 6430598J10Rik|Pctk2 - 10|10 C2 cyclin-dependent kinase 17 protein-coding 14715 Mm.26791 NM_010323 ENSMUSG00000029255 Gnrhr - - 5 E1|5 43.56 cM gonadotropin releasing hormone receptor protein-coding 14148 Mm.1061 NM_007996 ENSMUSG00000032051 Fdx1 - - 9|9 A5.3 ferredoxin 1 protein-coding 111392 Emv20 Emv-20 - - endogenous ecotropic MuLV 20 other 21163 T(3;12)30Rk T30Rk - - reciprocal translocation, Chr 3 and 12, Roderick 30 other 111699 Mpmv8 Mpmv-8 - - modified polytropic murine leukemia virus 8 other 230784 Mm.23608 NM_144907 ENSMUSG00000028893 Sesn2 HI95|SEST2|Ses2 - 4|4 D2.3 sestrin 2 protein-coding 73305 1700038C09Rik - - 10|10 RIKEN cDNA 1700038C09 gene protein-coding 52339 D8Ertd572e - - 8 38.37 cM DNA segment, Chr 8, ERATO Doi 572, expressed unknown 320927 6720474J12Rik - - 9|9 RIKEN cDNA 6720474J12 gene protein-coding 105244731 Mm.332344 XR_868367 Gm40289 Gm42505 - 5 B3|5 predicted gene, 40289 ncRNA 22406 Wld Wlds - 4|4 wallerian degeneration other 100124680 Trbv16 Gm16776|Tcrb-V11 - 6 19.24 cM|6 B1 T cell receptor beta, variable 16 other 67657 Mm.28158 NM_026297 ENSMUSG00000022827 Rabl3 4930553C05Rik|AA958834 - 16|16 B3 RAB, member RAS oncogene family-like 3 protein-coding 105242550 Gm38731 - - 5|5 predicted gene, 38731 ncRNA 215789 Mm.283359 NM_001033257 ENSMUSG00000062866 Phactr2 AV158170|BC012871 - 10|10 A2 phosphatase and actin regulator 2 protein-coding 111479 Parb - - XY 74.2 cM pseudoautosomal region boundary other 73184 Mm.254267 3110047M12Rik - - 15|15 RIKEN cDNA 3110047M12 gene protein-coding 111342 Surf - - - surfeit gene cluster other 74430 Mm.271901 NM_028934 ENSMUSG00000021747 4930452B06Rik 4933406L09Rik|AI854000 - 14|14 A1 RIKEN cDNA 4930452B06 gene protein-coding 252906 Mm.377265 NM_145844 ENSMUSG00000099611 Vmn1r189 V1rh2 - 13|13 A3.1 vomeronasal 1 receptor 189 protein-coding 100093684 Trnar-ccg - - - transfer RNA arginine (anticodon CCG) tRNA 242735 Mm.94020 NM_001162983 ENSMUSG00000028584 Lrrc38 A230053A07Rik - 4|4 E1 leucine rich repeat containing 38 protein-coding 237987 Mm.44542 NM_172801 ENSMUSG00000050201 Otop2 4732464P15 - 11|11 E2 otopetrin 2 protein-coding 99510 AA545176 - - - expressed sequence AA545176 unknown 102637882 XM_006541566 LOC102637882 - - X A3.3 pituitary homeobox 3-like protein-coding 105244822 XR_868931 Gm40359 - - 6 A3.3|6 predicted gene, 40359 ncRNA 52097 D16Ertd6e - - 16 12.4 cM DNA segment, Chr 16, ERATO Doi 6, expressed unknown 71881 Mm.26599 NM_027977 ENSMUSG00000033096 Apmap 2310001A20Rik|AI314817 - 2|2 G3 adipocyte plasma membrane associated protein protein-coding 231413 Mm.332474 NM_178700 ENSMUSG00000044221 Grsf1 BB232551|C80280|D5Wsu31e - 5 E1|5 43.85 cM G-rich RNA sequence binding factor 1 protein-coding 70584 Mm.21876 NM_027470 ENSMUSG00000030602 Pak4 5730488L07Rik|AW555722|mKIAA1142 - 7|7 B1 p21 (RAC1) activated kinase 4 protein-coding 104216 Ads2 Ads-2 - - anti dsDNA antibody 2 unknown 101489 Mm.281916 NM_053194 ENSMUSG00000025485 Ric8a AI114950|RIC-8|Ric8 - 7|7 F4 RIC8 guanine nucleotide exchange factor A protein-coding 75395 Mm.440014 NR_131758 ENSMUSG00000085645 Hoxb5os 0610040B09Rik|AV302770|Hoxb5/6as - 11|11 D homeobox B5 and homeobox B6, opposite strand ncRNA 100503710 Mm.440240 NM_001195531 ENSMUSG00000095845 Gm5741 EG436049 - 8|8 C3 predicted gene 5741 protein-coding 407830 Mm.440433 BC010981 - - - cDNA sequence BC010981 protein-coding 100504335 Gm20179 - - X|X 68.46 cM predicted gene, 20179 ncRNA 100503826 Gm13075 - - 4|4 74.0 cM predicted gene 13075 ncRNA 20893 Mm.2436 NM_011498 ENSMUSG00000030103 Bhlhe40 Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14 - 6|6 E2 basic helix-loop-helix family, member e40 protein-coding 21103 T(16;17)7Gso T7Gso - - reciprocal translocation, Chr 16 and 17, Generoso 7 other 61506 D8Mit110 - - 8 53.04 cM DNA segment, Chr 8, Massachusetts Institute of Technology 110 unknown 98250 D1Mgi23 AA990471 - - DNA segment, Chr 1, Mouse Genome Informatics 23 unknown 19361 Mm.330492 NM_011234 ENSMUSG00000027323 Rad51 AV304093|Rad51a|Reca - 2 E5|2 59.92 cM RAD51 recombinase protein-coding 112022 Szv2 Kasz7 - 7 64.3 cM seizure severity 2 unknown 20509 Mm.265060 NM_031196 ENSMUSG00000001436 Slc19a1 AI323572|RFC|RFC-1|RFC1 - 10 C1|10 39.72 cM solute carrier family 19 (folate transporter), member 1 protein-coding 628614 Ighv1-34 Gm16735 - 12|12 F2 immunoglobulin heavy variable 1-34 other 320545 A430019L02Rik - - 18|18 RIKEN cDNA A430019L02 gene protein-coding 14184 Mm.6904 NM_008010 ENSMUSG00000054252 Fgfr3 CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3 - 5 B2|5 17.83 cM fibroblast growth factor receptor 3 protein-coding 108167760 XR_001779657 LOC108167760 - - 10 D2 uncharacterized LOC108167760 ncRNA 100042948 Mm.406754 NR_030670 Gm15760 - - 16|16 A3 mitochondrial ribosomal protein S18B pseudogene pseudo 67446 Mm.46179 NM_175118 ENSMUSG00000047067 Dusp28 0710001B24Rik|AV005521 - 1|1 D dual specificity phosphatase 28 protein-coding 19557 Rb(4.6)2Bnr Rb2Bnr - - Robertsonian translocation, Chr 4 and 6, Universitat Bonn/Rhein 2 other 207181 Mm.326411 NM_178660 ENSMUSG00000039607 Rbms3 6720477E09Rik|8430436O14Rik - 9|9 F3 RNA binding motif, single stranded interacting protein protein-coding 109280144 LOC109280144 Mm1338 - - VISTA enhancer mm1338 biological-region 97400 C85813 - - - expressed sequence C85813 unknown 195555 Mm.389601 NM_001085414 ENSMUSG00000078512 Pramef6 Gm13099 - 4|4 E1 PRAME family member 6 protein-coding 100040448 XM_001474927 ENSMUSG00000094352 Btbd35f19 Gm2777 - X A3.1|X BTB domain containing 35, family member 19 protein-coding 665486 Gm7656 EG665486 - 7|7 C glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102634184 XR_381880 Gm31829 - - 12 E|12 predicted gene, 31829 ncRNA 61273 D2Mit235 - - 2 22.09 cM DNA segment, Chr 2, Massachusetts Institute of Technology 235 unknown 17754 Mm.36501 NM_032393 ENSMUSG00000027254 Map1a 6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1 - 2 E5|2 60.37 cM microtubule-associated protein 1 A protein-coding 12363 Mm.1569 NM_007609 ENSMUSG00000033538 Casp4 CASP-11|CASP-4|Casp11|Caspl|ich-3 - 9 A1|9 2.46 cM caspase 4, apoptosis-related cysteine peptidase protein-coding 17231 Mm.41979 NM_008572 ENSMUSG00000022157 Mcpt8 BB139338|MMCP-8 - 14 C3|14 28.19 cM mast cell protease 8 protein-coding 672799 Rpl37a-ps2 Gm9576 - 18|18 E2 ribosomal protein L37a, pseudogene 2 pseudo 99839 Mm.482598 AU067648 - - - expressed sequence AU067648 unknown 102631524 Gm21728 - - Y|Y predicted gene, 21728 ncRNA 105244066 XR_865898 Gm39745 - - 1 H6|1 predicted gene, 39745 ncRNA 112163558 Mm.458987 AA624815 - - - expressed sequence AA624815 protein-coding 110806267 LOC110806267 - - - Tert 5' regulatory region biological-region 667028 Gm8428 EG667028 - 6|6 A1 lysyl-tRNA synthetase pseudogene pseudo 668096 NM_001177418 Gm13698 - - 2|2 D CWC22 spliceosome-associated protein homolog pseudogene pseudo 67967 Mm.37562 NM_133692 ENSMUSG00000030726 Pold3 2410142G14Rik|C85233|P66|P68 - 7|7 E2 polymerase (DNA-directed), delta 3, accessory subunit protein-coding 100041900 Gm13526 - - 2|2 C1.1 predicted gene 13526 protein-coding 102635491 Mm.129011 XR_874873 Gm32815 - - 14 E1|14 predicted gene, 32815 ncRNA 112163571 Mm.130270 BB462381 - - - expressed sequence BB462381 protein-coding 102640936 XR_374186 Gm36882 - - 2 A3|2 predicted gene, 36882 ncRNA 328258 Mm.482177 NM_177809 ENSMUSG00000021509 Slc25a48 AU042651|E230025K15 - 13|13 B1 solute carrier family 25, member 48 protein-coding 102634671 Gm32203 - - 16|16 predicted gene, 32203 ncRNA 100035766 Hbnr7 Hpnr7 - - Heligmosomoides bakeri nematode resistance 7 unknown 108168996 XR_001784533 Gm46884 - - 4 C1|4 predicted gene, 46884 ncRNA 102632826 Gm17577 - - X|X 49.81 cM predicted gene, 17577 protein-coding 17095 Mm.4925 NM_008535 ENSMUSG00000034041 Lyl1 Lyl-1|bHLHa18 - 8 C2|8 41.02 cM lymphoblastomic leukemia 1 protein-coding 53678 DYByu3 D0Byu3 - - DNA segment, Chr Y, Brigham Young University 3 unknown 434863 XR_878275 ENSMUSG00000095872 Gm15128 Ott-like - X F2|X predicted gene 15128 protein-coding 546903 Mm.484975 NM_001166720 ENSMUSG00000093755 Vmn1r39 EG546903|Gm5993 - 6|6 C1 vomeronasal 1 receptor 39 protein-coding 100384882 Gm17828 - - 9 D|9 40.08 cM ribosomal protein L7A pseudogene pseudo 100504037 Gm16021 - - 11|11 45.25 cM predicted gene 16021 pseudo 11425 Mm.477720 NM_007385 ENSMUSG00000074336 Apoc4 Acl|apo-CIV|apoC-IV - 7 A3|7 9.94 cM apolipoprotein C-IV protein-coding 100416770 Gm14679 - - X|X A6 N-myristoyltransferase 1 pseudogene pseudo 102631544 XR_384855 Gm29855 - - 16 B4|16 predicted gene, 29855 ncRNA 116703 Listr2 - - 13 43.68 cM listeriosis resistance 2 unknown 15570 hubb hub|jaundice - - hyper-unconjugated bilirubinemia unknown 100034846 Loco2 - - 17 19.74 cM locomotor activity 2 unknown 100233207 Mm.373801 NM_001142953 ENSMUSG00000091685 Gm17359 - - 3|3 E3 predicted gene, 17359 protein-coding 319413 NM_176907 D830016O14Rik - - 19|19 A RIKEN cDNA D830016O14 gene protein-coding 19069 Mm.288962 NM_172394 ENSMUSG00000040667 Nup88 Nup84|Prei2 - 11 B4|11 43.21 cM nucleoporin 88 protein-coding 320256 Mm.110648 NM_177117 ENSMUSG00000038060 Dlec1 D630005C06Rik - 9|9 F3 deleted in lung and esophageal cancer 1 protein-coding 232836 Mm.246599 NM_178028 ENSMUSG00000034660 Galp - - 7|7 A1 galanin-like peptide protein-coding 114341 Wta4 - - 17 17.98 cM weight adult 4 unknown 106795 Mm.11434 NM_025674 ENSMUSG00000050410 Tcf19 5730403J10Rik|AW495861 - 17|17 B1 transcription factor 19 protein-coding 61040 DXMit164 - - X 15.78 cM DNA segment, Chr X, Massachusetts Institute of Technology 164 unknown 258340 Mm.377441 NM_146343 ENSMUSG00000059910 Olfr1265 MOR228-2 - 2|2 E1 olfactory receptor 1265 protein-coding 216560 Mm.138090 NM_145425 ENSMUSG00000020319 Wdpcp AV249152 - 11 A3.1|11 13.9 cM WD repeat containing planar cell polarity effector protein-coding 13850 Mm.15295 NM_007940 ENSMUSG00000022040 Ephx2 CEH|Eph2|SEH|sEP - 14 D1|14 34.36 cM epoxide hydrolase 2, cytoplasmic protein-coding 100526510 NR_037293 ENSMUSG00000106471 Mir3107 mir-486b|mmu-mir-3107|mmu-mir-486b - 8 A2|8 11.42 cM microRNA 3107 ncRNA 108167882 XR_001780163 Gm46269 - - 11 A1|11 predicted gene, 46269 ncRNA 635470 Gm14407 - - 2|2 H4 predicted gene 14407 protein-coding 16859 Mm.341434 NM_010708 ENSMUSG00000001123 Lgals9 AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9 - 11|11 B5 lectin, galactose binding, soluble 9 protein-coding 218695 Mm.250796 XM_017316348 Gm10044 - - 14 A1|14 predicted gene 10044 protein-coding 100038520 Gm10830 - - 15|15 predicted gene 10830 ncRNA 62144 D13Mit85 - - 13 14.39 cM DNA segment, Chr 13, Massachusetts Institute of Technology 85 unknown 100035951 Acla1 Acla-1 - 17 17.98 cM anticardiolipin antibody 1 unknown 21022 T(1;7)40H T40H - - reciprocal translocation, Chr 1 and 7, Harwell 40 other 434261 Krt8-ps Gm5604 - 7 A3|7 keratin 8, pseudogene pseudo 105244622 XR_867910 Gm40205 - - 4 C5|4 predicted gene, 40205 ncRNA 77761 Mm.234087 9230118N01Rik - - 2|2 RIKEN cDNA 9230118N01 gene protein-coding 105244812 LOC105244812 - - 6 A3.1 60S ribosomal protein L32 pseudogene pseudo 67876 Mm.281019 NM_026424 ENSMUSG00000025981 Coq10b 1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641 - 1|1 C1.2 coenzyme Q10B protein-coding 546726 Mm.457750 NM_001105201 ENSMUSG00000062432 Cyp26c1 EG546726 - 19|19 C2 cytochrome P450, family 26, subfamily c, polypeptide 1 protein-coding 360213 Mm.331156 NM_183037 ENSMUSG00000042766 Trim46 TRIFIC - 3|3 F1 tripartite motif-containing 46 protein-coding 100039730 Gm12168 - - 11|11 B1.1 predicted gene 12168 pseudo 100035049 Bwtn1 - - - body weight at necropsy 1 unknown 100036324 Mpdk4 - - - modifier of polycystic kidney disease 4 unknown 102634238 XR_001779912 Gm31870 - - 1 H6|1 predicted gene, 31870 ncRNA 61013 D5Mit193 - - 5 2.36 cM DNA segment, Chr 5, Massachusetts Institute of Technology 193 unknown 69094 Mm.29633 NM_026938 ENSMUSG00000019158 Tmem160 1810008O21Rik - 7|7 A2 transmembrane protein 160 protein-coding 77442 Mm.159922 NR_131083 ENSMUSG00000112041 9530020I12Rik - - 12|12 A1.1 RIKEN cDNA 9530020I12 gene ncRNA 108167942 XR_001780403 Gm46304 - - 11 E2|11 predicted gene, 46304 ncRNA 63019 D16Mit106 - - 16 57.68 cM DNA segment, Chr 16, Massachusetts Institute of Technology 106 unknown 108167580 XR_001778749 Gm46068 - - 8 A4|8 predicted gene, 46068 ncRNA 98932 Mm.271770 NM_172118 ENSMUSG00000067818 Myl9 AI327049|MLC20|Mylc2c|RLC-C - 2|2 H1 myosin, light polypeptide 9, regulatory protein-coding 100416933 Gm13724 - - 6|6 A3.3 phosphoglycerate kinase 1 pseudogene pseudo 108168695 Gm15781 - - 6 G3|6 78.74 cM cytochrome c, somatic pseudogene pseudo 235461 Mm.170855 NM_172772 ENSMUSG00000042444 Mindy2 AI465301|B230380D07Rik|Fam63b|mKIAA1164 - 9|9 D MINDY lysine 48 deubiquitinase 2 protein-coding 72914 2900012M01Rik - - 9|9 RIKEN cDNA 2900012M01 gene protein-coding 633640 Mm.46679 NM_001039244 ENSMUSG00000074634 Tmem267 EG633640|Gm7120 - 13|13 D2.3 transmembrane protein 267 protein-coding 102642194 XR_866879 Gm38598 - - 2 H1|2 predicted gene, 38598 ncRNA 20847 Mm.293120 NM_019963 ENSMUSG00000040033 Stat2 1600010G07Rik|AW496480 - 10 D3|10 76.5 cM signal transducer and activator of transcription 2 protein-coding 102634445 XR_386573 Gm32026 - - 19 A|19 predicted gene, 32026 ncRNA 108526 Ms13-38 Ms13-Hf22 - - minisatellite 13-38 detected by M13 phage probe other 60971 D12Mit4 - - 12 35.51 cM DNA segment, Chr 12, Massachusetts Institute of Technology 4 unknown 666359 Gm8061 EG666359 - X F1|X transcription elongation factor B (SIII), polypeptide 2 pseudogene pseudo 212190 Mm.292226 NM_178671 ENSMUSG00000043621 Ubxn10 5730509E04Rik|A830047D02|Ubxd3 - 4|4 D3 UBX domain protein 10 protein-coding 100041038 Gm12467 - - 4|4 B2 predicted gene 12467 pseudo 102634825 XR_380828 Gm32319 - - 10 D2|10 predicted gene, 32319 ncRNA 60727 DXMit54 - - X 6.64 cM DNA segment, Chr X, Massachusetts Institute of Technology 54 unknown 492869 Acsns3 - - 17 17.98 cM Angiostrongylus costaricensis nematode susceptibility 3 unknown 19525 Rb(3.5)1Icg Rb1Icg - - Robertsonian translocation, Chr 3 and 5, Inst of Cytology and Genetics Novosibirsk 1 other 105246329 Gm41630 - - 17|17 predicted gene, 41630 ncRNA 675689 Mm.478806 NM_001163353 Gm12171 - - 11|11 B1.1 predicted gene 12171 protein-coding 791333 Gm10050 - - - predicted gene 10050 protein-coding 108481 Ms92 MMS92 - - minisatellites detected by probe MMS92 other 100036344 Chlq2 - - 3 27.32 cM circulating hormone level QTL 2 unknown 665210 Mm.469864 NM_001104540 ENSMUSG00000091206 Vmn2r91 EG665210 - 17|17 A3.2 vomeronasal 2, receptor 91 protein-coding 240913 Mm.491147 NM_172845 ENSMUSG00000006403 Adamts4 ADAM-TS4|ADAMTS-2|ADMP-1 - 1 H3|1 79.28 cM a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 protein-coding 100503390 Mm.412755 XR_385043 Gm17518 - - 16 C3.3|16 51.88 cM predicted gene, 17518 ncRNA 327984 Mm.438254 E130101M22 - - 11|11 C uncharacterized protein E130101M22 protein-coding 58998 Mm.40477 NM_021495 ENSMUSG00000022656 Nectin3 2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3 - 16|16 B5 nectin cell adhesion molecule 3 protein-coding 27525 B432H10S - - - DNA segment, B432H10S unknown 102224 Mm.394834 AU019542 - - - expressed sequence AU019542 unknown 71011 Mm.307348 NR_033580 ENSMUSG00000055700 4933401B06Rik - - X|X D GLE1 RNA export mediator pseudogene pseudo 230641 Gm12833 - - 4|4 D1 predicted gene 12833 pseudo 108169097 XM_017321258 ENSMUSG00000094195 LOC108169097 - - 5 E3 PRAME family member 8-like protein-coding 102631858 XR_388982 Gm30084 - - 11 D|11 predicted gene, 30084 ncRNA 625121 Mm.450651 XR_001780862 Gm6556 EG625121 - 13|13 A1 predicted gene 6556 unknown 108168247 Gm46522 - - 15 B2|15 60S ribosomal protein L7a pseudogene pseudo 94246 Mm.439784 NM_194262 ENSMUSG00000039219 Arid4b BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180 - 13 A1|13 5.29 cM AT rich interactive domain 4B (RBP1-like) protein-coding 100036163 Spnw6 - - - spleen weight 6 unknown 69671 Mm.45401 NM_027161 ENSMUSG00000023153 Tmem52 2310043I08Rik - 4|4 E2 transmembrane protein 52 protein-coding 108168520 XM_017318712 ENSMUSG00000094821 LOC108168520 - - Y C3 X-linked lymphocyte-regulated protein PM1-like protein-coding 105245758 Gm41157 - - 14|14 predicted gene, 41157 ncRNA 14915 Mm.2614 NM_008190 ENSMUSG00000023247 Guca2a Guca2 - 4 D2.1|4 55.47 cM guanylate cyclase activator 2a (guanylin) protein-coding 100041085 Mm.332530 NM_001173500 ENSMUSG00000071335 Mfsd4b3 G630090E17Rik|Naglt1c - 10 B1|10 major facilitator superfamily domain containing 4B3 protein-coding 234378 Mm.187090 NM_172052 ENSMUSG00000055707 Klhl26 C630013N10Rik|Klkl26 - 8|8 B3.3 kelch-like 26 protein-coding 105244161 XR_879831 Gm39821 - - 11 B1.3|11 predicted gene, 39821 ncRNA 100042434 Gm3844 - - 13 B3|13 predicted gene 3844 protein-coding 108167676 LOC108167676 - - 9 E3.3 histone H3.3-like pseudo 621093 Mup-ps13 EG621093|Gm16003 - 4 B3|4 major urinary protein, pseudogene 13 pseudo 97986 C85445 - - - expressed sequence C85445 protein-coding 61243 D1Mit287 - - 1 57.91 cM DNA segment, Chr 1, Massachusetts Institute of Technology 287 unknown 102467552 n-TLcaa1 n-Tl10 - 13 A2|13 nuclear encoded tRNA leucine 1 (anticodon CAA) tRNA 109115962 LOC109115962 - - - Fgf3 proximal promoter region biological-region 268781 Gm5043 EG268781 - 15|15 A1 myotubularin related protein 3 pseudogene pseudo 71274 Mm.399152 NR_040719 ENSMUSG00000097021 4933433G15Rik 4921522K19Rik - 9|9 D RIKEN cDNA 4933433G15 gene ncRNA 665328 Gm7587 EG665328 - 7|7 A1 predicted gene 7587 pseudo 666098 Gm7928 EG666098 - 13|13 B3 predicted gene 7928 pseudo 16168 Mm.4392 NM_008357 ENSMUSG00000031712 Il15 AI503618|IL-15 - 8 C2|8 39.33 cM interleukin 15 protein-coding 671132 Mm.389803 XR_391191 ENSMUSG00000108654 Gm9519 - - 7 A2|7 predicted gene 9519 unknown 107671 Ilk-rs - - - integrin linked kinase, related sequence protein-coding 107604629 LOC107604629 - - - Ren1 promoter and enhancer region biological-region 98285 AI255230 - - - expressed sequence AI255230 unknown 668515 Ighv1-35 EG668515|Gm9217 - 12 F2|12 immunoglobulin heavy variable 1-35 pseudo 66155 Mm.2815 NM_025388 ENSMUSG00000062963 Ufc1 1110021H02Rik|AA062310|ESTM29 - 1 H3|1 79.31 cM ubiquitin-fold modifier conjugating enzyme 1 protein-coding 100415900 Gm20946 - - 8 A2|8 predicted gene, 20946 pseudo 108168787 XR_001783448 Gm46759 - - 2 F1|2 predicted gene, 46759 ncRNA 69216 Mm.36697 NM_024462 ENSMUSG00000028643 Svbp 2410005K17Rik|AI851162|Ccdc23 - 4|4 D2.1 small vasohibin binding protein protein-coding 105243482 XR_880218 Gm39391 - - 11 D|11 predicted gene, 39391 ncRNA 105244708 XR_868279 4930568A13Rik Gm43716 - 5|5 A1 RIKEN cDNA 4930568A13 gene ncRNA 258074 Mm.379445 NM_001011823 ENSMUSG00000095525 Olfr834 MOR153-2|MOR153-4_p - 9|9 A2 olfactory receptor 834 protein-coding 239435 Mm.24204 NM_175503 ENSMUSG00000068522 Aard A5D3|AV328152 - 15|15 C alanine and arginine rich domain containing protein protein-coding 665015 Gm7449 EG665015 - 1|1 A1 high mobility group box 1-like pseudogene pseudo 62778 D16Mit138 - - 16 29.93 cM DNA segment, Chr 16, Massachusetts Institute of Technology 138 unknown 105243144 XR_870258 Gm39144 - - 8 A2|8 predicted gene, 39144 ncRNA 100036291 Manln9 - - 10 54.72 cM mandible length 9 unknown 102637788 XR_001784266 Gm12405 - - 4 A5|4 21.8 cM predicted gene 12405 ncRNA 105855 Mm.30805 NM_153505 ENSMUSG00000022488 Nckap1l 4930568P13Rik|AI463083|Hem1|Hemp1 - 15|15 F3 NCK associated protein 1 like protein-coding 667609 Gm13328 - - 2|2 A3 mitochondrial ribosomal protein S5 pseudogene pseudo 59011 Mm.439911 NM_021508 ENSMUSG00000068697 Myoz1 2310001N11Rik|AV090278|FATZ|Myoz - 14|14 A3 myozenin 1 protein-coding 666498 Gm13149 - - 4|4 E1 predicted gene 13149 protein-coding 105243502 XR_871019 Gm39404 - - 9 E3.3|9 predicted gene, 39404 ncRNA 328235 Mm.188356 NR_045285 ENSMUSG00000089815 Gm5083 A730030A06 - 13 A4|13 predicted gene 5083 ncRNA 100416357 Gm18067 - - 17|17 C ribosomal protein L5 pseudogene pseudo 319764 Mm.208482 NM_001354493 ENSMUSG00000085139 A730046J19Rik SERTM2 - X|X F2 RIKEN cDNA A730046J19 gene protein-coding 77112 5930427J20Rik - - 18|18 RIKEN cDNA 5930427J20 gene protein-coding 68174 4930534H18Rik AV040741 - 16|16 C3.3 RIKEN cDNA 4930534H18 gene protein-coding 105243340 XR_870522 Gm39289 - - 9 A1|9 predicted gene, 39289 ncRNA 102467617 n-TVaac3 n-Tv3 - 13 A3.1|13 nuclear encoded tRNA valine 3 (anticodon AAC) tRNA 105243999 XR_865712 Gm39694 - - 1 H2.3|1 predicted gene, 39694 ncRNA 23945 Mm.272197 NM_011844 ENSMUSG00000033174 Mgll AA589436|Magl|Mgl - 6|6 D1 monoglyceride lipase protein-coding 18231 Mm.46954 NM_008751 ENSMUSG00000046178 Nxph1 C130005L03Rik - 6|6 A1 neurexophilin 1 protein-coding 56460 Mm.350037 NM_019762 ENSMUSG00000054065 Pkp3 2310056L12Rik - 7|7 F5 plakophilin 3 protein-coding 22421 Mm.56964 NM_009527 ENSMUSG00000030093 Wnt7a AI849442|Wnt-7a|px|tw - 6 D1|6 40.45 cM wingless-type MMTV integration site family, member 7A protein-coding 387156 NR_029819 ENSMUSG00000065414 Mir138-1 Mirn138|Mirn138-1|mir-138-1 - 9|9 F4 microRNA 138-1 ncRNA 100417145 Gm6608 625628 - 6|6 F3 predicted gene 6608 pseudo 627235 Gm6741 EG627235 - 17|17 E5 haloacid dehalogenase-like hydrolase domain containing 4 pseudogene pseudo 110742 Dcsx3 - - - distortion controlling, chromosome X, locus 3 protein-coding 100417136 Gm17228 - - 17|17 E1.1 predicted gene 17228 pseudo 105246781 XR_878741 Gm42019 - - 5 F|5 predicted gene, 42019 ncRNA 100141473 LOC100141473 - - - low-density lipoprotein receptor domain class A containing protein protein-coding 102465218 NR_105832 ENSMUSG00000098718 Mir496b Gm28028|mmu-mir-496b - 19|19 A microRNA 496b ncRNA 112162 Imh1 - - - IgM hypergammaglobulinemia 1 unknown 67471 Mm.358705 NM_026181 ENSMUSG00000063808 Gpatch1 1300003A17Rik|ECGP|Gpatc1 - 7|7 B2 G patch domain containing 1 protein-coding 74935 4930480K02Rik Gm44263 - 6|6 RIKEN cDNA 4930480K02 gene protein-coding 102632551 XR_381052 Gm30596 - - 11 A1|11 predicted gene, 30596 ncRNA 109538 Tmevd4 - - - Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 4 unknown 100042788 Gm4032 - - 14|14 C3 predicted gene 4032 pseudo 109928 Rmcf - - - resistance to MCF virus unknown 664812 Gm7351 EG664812 - 8|8 B2 ribosomal protein S7 pseudogene pseudo 100113372 Afteq2 - - - acute functional tolerance to ethanol QTL 2 unknown 407811 Mm.436951 BC060293 - - - cDNA sequence BC060293 protein-coding 102634070 Gm28421 - - Y|Y predicted gene 28421 ncRNA 103406 Mm.158783 NM_001034895 ENSMUSG00000034949 Zfr2 2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086 - 10|10 C1 zinc finger RNA binding protein 2 protein-coding 83814 Mm.98668 NM_031881 ENSMUSG00000024589 Nedd4l 1300012C07Rik|Nedd4-2|Nedd4b - 18|18 E1 neural precursor cell expressed, developmentally down-regulated gene 4-like protein-coding 218298 Gm4810 EG218298 - 13|13 B3 SNW domain containing 1 pseudogene pseudo 62884 D11Mit230 - - 11 16.15 cM DNA segment, Chr 11, Massachusetts Institute of Technology 230 unknown 100042594 XM_017318734 ENSMUSG00000094570 Gm20931 - - Y|Y C2 predicted gene, 20931 protein-coding 669000 Gm9440 EG669000 - X|X A2 predicted gene 9440 pseudo 15373 Mm.323562 NM_008257 ENSMUSG00000040148 Hmx3 Nkx-5.1|Nkx5-1|Nkx5.1 - 7 F3|7 74.32 cM H6 homeobox 3 protein-coding 108168382 XR_001782452 Gm46626 - - 18 E1|18 predicted gene, 46626 ncRNA 74550 9130007G19Rik - - 2|2 E5 RIKEN cDNA 9130007G19 gene protein-coding 665143 Gm7514 EG665143 - 7|7 F5 predicted gene 7514 pseudo 320449 Mm.404477 NR_131124 ENSMUSG00000103690 A730004F24Rik - - 1|1 H5 RIKEN cDNA A730004F24 gene ncRNA 116523 Obq10 - - 2 62.22 cM obesity QTL 10 unknown 234878 Mm.216458 NM_145608 ENSMUSG00000031853 Map3k21 Mlk4|mKIAA1804 - 8|8 E2 mitogen-activated protein kinase kinase kinase 21 protein-coding 100043935 Gm14365 - - X|X A1.1 RNA binding protein with multiple splicing 2 pseudogene pseudo 214547 Mm.225 NM_172530 ENSMUSG00000046280 She 9430022A14 - 3|3 F1 src homology 2 domain-containing transforming protein E protein-coding 353123 NR_153851 ENSMUSG00000084890 A830036E02Rik - - 11|11 D RIKEN cDNA A830036E02 gene ncRNA 668398 Gm9149 EG668398 - 7|7 B1 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 242509 Mm.190774 NM_172870 ENSMUSG00000028487 Bnc2 5031434M05Rik|8430420F16Rik - 4|4 C4 basonuclin 2 protein-coding 77311 C030011I16Rik - - 17|17 RIKEN cDNA C030011I16 gene protein-coding 404440 Olfr880-ps1 - - 9|9 A4 olfactory receptor 880, pseudogene 1 pseudo 623534 Mm.484967 NM_001165957 Nme9 Txndc6 - 9|9 E3.3 NME/NM23 family member 9 protein-coding 116883 Pgia8 - - 15 13.74 cM proteoglycan induced arthritis 8 unknown 19131 Mm.425348 NM_011174 ENSMUSG00000059934 Prh1 MP2|Prp - 6 64.03 cM|6 G1 proline rich protein HaeIII subfamily 1 protein-coding 195727 Mm.336313 NM_001081052 ENSMUSG00000059493 Nhs Gm389|Gm48|Nhs1|Xcat - X F4|X 74.17 cM NHS actin remodeling regulator protein-coding 13897 Mm.63490 NM_133660 ENSMUSG00000061959 Ces1e Eg|Es-22|Es22|egasyn - 8 C5|8 45.11 cM carboxylesterase 1E protein-coding 60697 DXMit5 - - X 74.91 cM DNA segment, Chr X, Massachusetts Institute of Technology 5 unknown 109136 Mm.26510 NM_133823 ENSMUSG00000037022 Mmaa 2810018E08Rik|AI840684 - 8|8 C1 methylmalonic aciduria (cobalamin deficiency) type A protein-coding 64602 Mm.208991 NM_022655 ENSMUSG00000032293 Ireb2 D9Ertd85e|Irp2 - 9 B|9 29.81 cM iron responsive element binding protein 2 protein-coding 105244012 XR_865739 Gm37125 - - 1 H3|1 predicted gene, 37125 ncRNA 71885 Mm.274890 NM_027980 ENSMUSG00000025384 Faap100 2310003H01Rik - 11|11 E2 Fanconi anemia core complex associated protein 100 protein-coding 101592 Mm.238020 NM_175317 ENSMUSG00000038563 Efl1 4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1 - 7 D3|7 47.25 cM elongation factor like GPTase 1 protein-coding 102467391 n-TWcca1 n-Tw1 - 10 A4|10 nuclear encoded tRNA trytophan 1 (anticodon CCA) tRNA 100529 AA517864 - - - expressed sequence AA517864 unknown 108169128 XR_001785191 Gm46949 - - 6 A1|6 predicted gene, 46949 ncRNA 108168171 XR_001781344 Gm46462 - - 14 A1|14 predicted gene, 46462 ncRNA 61835 D2Mit307 - - 2 63.42 cM DNA segment, Chr 2, Massachusetts Institute of Technology 307 unknown 74583 4833411I10Rik - - 2|2 RIKEN cDNA 4833411I10 gene protein-coding 102634706 Gm32227 - - 7|7 predicted gene, 32227 ncRNA 74342 Mm.292568 NM_028880 ENSMUSG00000060780 Lrrtm1 4632401D06Rik|AW125451 - 6|6 C3 leucine rich repeat transmembrane neuronal 1 protein-coding 359846 DXMgc78 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 78 unknown 17625 Ms47 MMS47 - - minisatellites detected by probe MMS47 other 75404 Mm.44305 NM_001081123 ENSMUSG00000036198 Arhgap36 1100001E04Rik|rho-gap - X|X A5 Rho GTPase activating protein 36 protein-coding 22691 Mm.358645 NM_009553 ENSMUSG00000038797 Zscan2 Zfp-29|Zfp29 - 7 D3|7 45.71 cM zinc finger and SCAN domain containing 2 protein-coding 75343 4930557B06Rik - - 5|5 RIKEN cDNA 4930557B06 gene protein-coding 667039 Gm13172 - - 4|4 E2 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 102632772 Mm.446778 XR_378930 Gm30759 - - 8 B1.1|8 predicted gene, 30759 ncRNA 102636481 XR_866132 Gm33536 - - 2 B|2 predicted gene, 33536 ncRNA 227753 Mm.443 NM_146120 ENSMUSG00000026879 Gsn ADF - 2 B|2 23.5 cM gelsolin protein-coding 97881 A530058O07Rik C80161 - - RIKEN cDNA A530058O07 gene protein-coding 100862150 LOC100862150 - - - PRAME family member 6-like pseudo 106804090 LOC106804090 - - - nonconserved acetylation island sequence M45 enhancer biological-region 102639824 XR_391687 Gm36046 - - X A5|X predicted gene, 36046 ncRNA 77034 Mm.183076 NM_029841 ENSMUSG00000044496 2510039O18Rik Kiaa2013 - 4|4 E2 RIKEN cDNA 2510039O18 gene protein-coding 66727 Mm.116803 NM_025731 ENSMUSG00000024973 Hrasls5 1700055A14Rik|1700086E08Rik|4921526K24Rik|HRSL5|iNAT - 19|19 A HRAS-like suppressor family, member 5 protein-coding 215895 Mm.473684 NM_001101452 ENSMUSG00000090298 Sult3a2 EG215895|Gm4794 - 10|10 B1 sulfotransferase family 3A, member 2 protein-coding 70598 Mm.23049 NM_001081243 ENSMUSG00000034898 Filip1 5730485H21Rik|AI843021 - 9|9 E1 filamin A interacting protein 1 protein-coding 547447 XM_006528356 Gm6038 EG547447 - X|X A7.2 predicted pseudogene 6038 protein-coding 67017 Mm.30013 NM_025912 ENSMUSG00000027495 Fam210b 2010011I20Rik|AI430961|AV108736 - 2|2 H3 family with sequence similarity 210, member B protein-coding 28046 D16Ium33e D16Ium33 - - DNA segment, Chr 16, Indiana University Medical 33, expressed unknown 76013 Mm.446542 5830407E08Rik - - 2|2 RIKEN cDNA 5830407E08 gene protein-coding 619900 Rps27a-ps2 EG619900|Gm6111 - 9|9 E2 ribosomal protein S27A, pseudogene 2 pseudo 432834 Gm5459 EG432834 - 14|14 B predicted gene 5459 protein-coding 104679 9530018D06Rik AW742795 - - RIKEN cDNA 9530018D06 gene protein-coding 78375 2810433H14Rik - - 14|14 RIKEN cDNA 2810433H14 gene protein-coding 77072 Mm.446079 6720420G18Rik - - 5|5 RIKEN cDNA 6720420G18 gene protein-coding 665497 Gm7662 - - 18|18 E4 high mobility group box 2 pseudogene pseudo 108167806 XM_017314177 Gm46221 - - 10 B2|10 predicted gene, 46221 protein-coding 21778 Mm.14485 NM_009359 ENSMUSG00000090626 Tex9 Gm19407|tsec-1 - 9|9 D testis expressed gene 9 protein-coding 110696 Mm.303091 NM_201608 ENSMUSG00000058124 H2-M10.3 5.3H - 17 B1|17 19.01 cM histocompatibility 2, M region locus 10.3 protein-coding 77839 A930036A04Rik - - 12|12 RIKEN cDNA A930036A04 gene protein-coding 100038541 Mm.382638 Gm10554 - - 18 A1|18 predicted gene 10554 unknown 102633312 Mm.50225 XR_001780140 1700001J04Rik 4930429E18Rik - 11|11 E2 RIKEN cDNA 1700001J04 gene ncRNA 28267 D10Jhu61 - - - DNA segment, Chr 10, Johns Hopkins University 61 unknown 102631706 XR_378302 Gm29976 - - 7 D3|7 predicted gene, 29976 ncRNA 97314 C81608 - - - expressed sequence C81608 protein-coding 109279979 LOC109279979 Mm673 - - VISTA enhancer mm673 biological-region 233189 Mm.26514 NM_145582 ENSMUSG00000038888 Ctu1 Atpbd3|BC005752 - 7|7 B3 cytosolic thiouridylase subunit 1 protein-coding 640914 Gm14107 - - 2|2 G2 predicted gene 14107 pseudo 100861481 NR_046128 ENSMUSG00000096710 n-R5s117 Rn5s11 - 8 E1|8 72.1 cM nuclear encoded rRNA 5S 117 rRNA 258928 Mm.377751 NM_146926 ENSMUSG00000096151 Olfr477 MOR204-1 - 7|7 E3 olfactory receptor 477 protein-coding 239853 Mm.258979 NM_172825 ENSMUSG00000022755 Adgrg7 9130020O16Rik|Gpr128 - 16|16 C1.1 adhesion G protein-coupled receptor G7 protein-coding 665989 Gm7879 EG665989 - 5|5 B3 peptidyl prolyl isomerase H pseudogene pseudo 97500 T25669 - - - expressed sequence T25669 unknown 66706 Mm.29471 NM_023247 ENSMUSG00000070283 Ndufaf3 4733401H18Rik - 9|9 F2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3 protein-coding 67976 Mm.284710 NM_026485 ENSMUSG00000015363 Trabd 5730502D15Rik|AL023039 - 15|15 E3 TraB domain containing protein-coding 100035617 Adip12 - - 4 74.75 cM adiposity 12 unknown 108341 Mtv42 Mtv-42 - - mammary tumor virus locus 42 other 102640808 Mm.404555 XR_378074 Gm26653 - - 6 G1|6 predicted gene, 26653 ncRNA 111491 Xmmv42 Xmmv-42|Xp-1 - - xenotropic-MCF leukemia virus 42 other 69083 Mm.19320 NM_026935 ENSMUSG00000023122 Sult1c2 1810008N17Rik|ST1C1|ST1C2|Sult1c1 - 17|17 C sulfotransferase family, cytosolic, 1C, member 2 protein-coding 85113 D18Mit19 - - 18 3.02 cM DNA segment, Chr 18, Massachusetts Institute of Technology 19 unknown 111792 Iapls3-10 - - - intracisternal A particle, lymphocyte specific 3-10 other 102636415 XR_381676 Gm33487 - - 12 C3|12 predicted gene, 33487 ncRNA 61644 D8Mit227 - - 8 24.34 cM DNA segment, Chr 8, Massachusetts Institute of Technology 227 unknown 108168032 XR_001780708 Gm46380 - - 12 F1|12 predicted gene, 46380 ncRNA 61131 D5Mit405 - - 5 56.76 cM DNA Segment, Chr 5 Massachusetts Institute of Technology 405 unknown 102466212 NR_105949 ENSMUSG00000098389 Mir6983 Gm27496|mmu-mir-6983 - 18|18 E1 microRNA 6983 ncRNA 102633471 XR_001778536 Gm31288 - - 8 A2|8 predicted gene, 31288 ncRNA 21831 thf - - - thin fur unknown 114241 Stk19-ps1 RP2 - 17|17 B1 serine/threonine kinase 19, pseudogene 1 pseudo 21058 T(11;13)56H T56H - - reciprocal translocation, Chr 11 and 13, Harwell 56 other 70895 4921511E07Rik - - 1|1 RIKEN cDNA 4921511E07 gene protein-coding 384358 Gm5302 EG384358 - 6|6 A3.1 ribosomal protein L7A pseudogene pseudo 668528 Gm13758 - - 2|2 D voltage-dependent anion channel 1 pseudogene pseudo 102635144 Mm.357537 XR_376986 Gm32556 - - 5 C3.1|5 predicted gene, 32556 ncRNA 108167491 LOC108167491 - - 7 A3 60S ribosomal protein L15 pseudogene pseudo 258780 Mm.451664 NM_146784 ENSMUSG00000094701 Olfr916 MOR168-1 - 9|9 A5.1 olfactory receptor 916 protein-coding 14734 Mm.22515 NM_016697 ENSMUSG00000055653 Gpc3 OCI-5 - X|X A5 glypican 3 protein-coding 62372 D11Mit162 - - 11 10.57 cM DNA segment, Chr 11, Massachusetts Institute of Technology 162 unknown 223732 Mm.6471 NM_177630 ENSMUSG00000055745 Rtl6 BC058638|Ldoc1l|Mar6|Mart6 - 15|15 E2 retrotransposon Gag like 6 protein-coding 387146 NR_029542 ENSMUSG00000070076 Mir127 Mirn127|mir-127|mmu-mir-127 - 12|12 F1 microRNA 127 ncRNA 171236 Mm.377192 NM_134202 ENSMUSG00000045575 Vmn1r233 V1rf5 - 17|17 A3.2 vomeronasal 1 receptor 233 protein-coding 102634874 XR_378339 Gm32353 - - 7 E1|7 predicted gene, 32353 ncRNA 107436 Pchr - - - Plasmodium chaubaudi resistance protein-coding 58869 Mm.151332 NM_021483 ENSMUSG00000027674 Pex5l 1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp - 3|3 A3 peroxisomal biogenesis factor 5-like protein-coding 102637353 Gm34188 - - 3|3 predicted gene, 34188 ncRNA 11632 Mm.10433 NM_016666 ENSMUSG00000024847 Aip AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2 - 19 A|19 3.82 cM aryl-hydrocarbon receptor-interacting protein protein-coding 17543 Ms10e MMS10-E - - minisatellite 10e detected by probe MMS10 other 664702 Mm.381066 NR_029458 A530088E08Rik - - 17|17 B1 RIKEN cDNA A530088E08 gene ncRNA 64381 Mm.34460 NM_022430 ENSMUSG00000024730 Ms4a8a 2010004L09Rik|AI481240|CD20L5|Ms4a8 - 19|19 A membrane-spanning 4-domains, subfamily A, member 8A protein-coding 102637587 XR_377703 ENSMUSG00000108285 Gm34358 Gm43995 - 6 B3|6 predicted gene, 34358 ncRNA 71910 Mm.385055 NM_028000 ENSMUSG00000031570 Plpp5 1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b - 8 A2|8 phospholipid phosphatase 5 protein-coding 100038628 Mm.212585 NR_033472 ENSMUSG00000025194 Gm10768 - - 19 C3|19 predicted gene 10768 ncRNA 14347 Mm.1203 NM_013524 ENSMUSG00000036587 Fut7 AI853193|FTVII|Fuc-TVII|FucT-VII - 2|2 A3 fucosyltransferase 7 protein-coding 56644 Mm.239516 NM_020008 ENSMUSG00000079293 Clec7a BGR|Clecsf12|beta-GR - 6|6 F3 C-type lectin domain family 7, member a protein-coding 102634785 XR_375138 Gm32286 - - 2 H1|2 predicted gene, 32286 ncRNA 110577 Tcra-V12.2 - - - T cell receptor alpha, variable 12.2 other 100503734 Mm.484526 Gm19863 - - 1|1 15.75 cM predicted gene, 19863 unknown 65958 Ccl19-ps2 ELC|Scya19-ps2 - 4 A5|4 22.67 cM chemokine (C-C motif) ligand 19, pseudogene 2 pseudo 18477 Mm.30929 NM_011034 ENSMUSG00000028691 Prdx1 MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1 - 4 D1|4 53.28 cM peroxiredoxin 1 protein-coding 67106 Mm.36575 NM_025970 ENSMUSG00000057572 Zbtb8os 2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm - 4|4 D2.2 zinc finger and BTB domain containing 8 opposite strand protein-coding 319195 Mm.276337 NM_001002239 ENSMUSG00000062328 Rpl17 - - 18|18 E2 ribosomal protein L17 protein-coding 108168963 Zfp978 Gm13145 - 4 E1|4 78.48 cM zinc finger protein 978 pseudo 100306934 Gm17815 - - 3|3 F2.1 lactate dehydrogenase A pseudogene pseudo 62914 D10Mit192 - - 10 18.85 cM DNA segment, Chr 10, Massachusetts Institute of Technology 192 unknown 279056 Gm14140 - - 2|2 G3 REX4, RNA exonuclease 4 homolog pseudogene pseudo 216835 Mm.158885 NM_173754 ENSMUSG00000020905 Usp43 - - 11|11 B3 ubiquitin specific peptidase 43 protein-coding 102638158 XR_873544 Gm34788 - - 13 B2|13 predicted gene, 34788 ncRNA 100036039 Kwq15 Kwq9 - - kidney weight QTL 15 unknown 258345 Mm.377444 NM_146348 ENSMUSG00000070852 Olfr1121 MOR264-18 - 2|2 D olfactory receptor 1121 protein-coding 279706 Mm.102590 NM_001081668 ENSMUSG00000072944 Nup62cl Gm719 - X|X F1 nucleoporin 62 C-terminal like protein-coding 100038577 Mm.387093 NR_033545 ENSMUSG00000113856 Gm10790 - - 13 A4|13 predicted gene 10790 ncRNA 105244878 Gm40408 - - 6|6 predicted gene, 40408 ncRNA 114233 Eae19 - - 19 29.79 cM experimental allergic encephalomyelitis susceptibility 19 unknown 666966 Gm8387 EG666966 - 16|16 B3 predicted gene 8387 pseudo 100503921 Mm.483674 Gm19966 - - 6|6 15.12 cM predicted gene, 19966 unknown 100040698 Mm.489578 NM_001243015 ENSMUSG00000101294 Btbd35f15 Gm2913 - X A3.2|X BTB domain containing 35, family member 15 protein-coding 359987 DXMgc124 - - - DNA segment, Chr X, MRC UK Mouse Genome Centre 124 unknown 625167 Mm.389772 NR_110455 ENSMUSG00000107660 Gm6559 EG625167 - 6|6 B3 predicted gene 6559 ncRNA 56085 Mm.182053 NM_026842 ENSMUSG00000005312 Ubqln1 1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1 - 13 B1|13 30.95 cM ubiquilin 1 protein-coding 606545 Gm6072 EG606545|Ppia-ps6_789.1 - 6|6 C3 peptidylprolyl isomerase A pseudogene 6_789.1 pseudo 320179 Mm.245316 B230216C01Rik - - 2|2 RIKEN cDNA B230216C01 gene protein-coding 666009 XM_017313121 Gm7889 EG666009 - 1|1 D predicted gene 7889 protein-coding 102632008 XR_375370 Gm30189 - - 2 H4|2 predicted gene, 30189 ncRNA 102465602 NR_105962 ENSMUSG00000098548 Mir6996 Gm27531|mmu-mir-6996 - 2|2 A3 microRNA 6996 ncRNA 93969 Mm.333431 NM_053152 Klra22 Ly49v - - killer cell lectin-like receptor subfamily A, member 22 protein-coding 100503524 Gm13567 - - 2|2 34.81 cM 40S ribosomal protein S21-like pseudo 77257 Mm.253367 XR_374262 9430024E24Rik - - 2|2 B RIKEN cDNA 9430024E24 gene unknown 76683 Mm.394279 XR_378553 1500002F19Rik - - 7|7 F3 RIKEN cDNA 1500002F19 gene ncRNA 62890 D11Mit218 - - 11 24.4 cM DNA segment, Chr 11, Massachusetts Institute of Technology 218 unknown 105243644 XR_880351 Gm39484 - - 11 E2|11 predicted gene, 39484 ncRNA 102632589 XR_867474 Gm26232 - - 3 F2.1|3 predicted gene, 26232 ncRNA 105245146 XR_871627 Gm40639 - - 10 B2|10 predicted gene, 40639 ncRNA 28258 D10Jhu41 - - 10 39.72 cM DNA segment, Chr 10, Johns Hopkins University 41 unknown 102639584 LOC102639584 - - 17 E4 ubiquitin-conjugating enzyme E2 S-like pseudo 61712 D5Mit314 - - 5 53.25 cM DNA segment, Chr 5, Massachusetts Institute of Technology 314 unknown 547103 Gm10674 EG547103 - 8|8 B1.3 predicted gene 10674 protein-coding 16388 Is(In7;X)1Ct Flecked|Is(X;7)1Ct|Is1Ct|T(7:X)1Ct|T(X;1)Ct|T(X;7)1Ct|T(X;I)Ct|T1Ct|fd - - insertion, inverted Chr 7 piece into Chr X, Cattanach 1 other 61077 D1Mit316 - - 1 2.46 cM DNA segment, Chr 1, Massachusetts Institute of Technology 316 unknown 76184 Mm.159704 NM_147218 ENSMUSG00000044749 Abca6 6330565N06Rik - 11|11 E1 ATP-binding cassette, sub-family A (ABC1), member 6 protein-coding 545732 Mm.389066 NM_001177510 ENSMUSG00000067848 4933402N22Rik - - 5 A1|5 RIKEN cDNA 4933402N22 gene protein-coding 85189 D1Mit223 - - 1 93.21 cM DNA segment, Chr 1, Massachusetts Institute of Technology 223 unknown 17189 Mm.404074 NM_013593 ENSMUSG00000018893 Mb AI325109 - 15 D3|15 36.36 cM myoglobin protein-coding 224662 Mm.328925 4932407I05 - - 17|17 A3.3 uncharacterized protein 4932407I05 unknown 22060 Trp53-ps - - 17 C|17 28.3 cM transformation related protein 53, pseudogene pseudo 102636518 XR_389979 Gm33560 - - 7 F5|7 predicted gene, 33560 ncRNA 15974 Mm.377093 NM_008336 ENSMUSG00000100079 Ifnab - - 4|4 C4 interferon alpha B protein-coding 106780820 Obox4-ps36 Gm20665 - 7 A1|7 8.3 cM oocyte specific homeobox 4, pseudogene 36 pseudo 56720 Mm.258622 NM_019911 ENSMUSG00000028011 Tdo2 AA407491|TDO|TO|chky - 3|3 E3 tryptophan 2,3-dioxygenase protein-coding 102467284 n-Tcgca44 n-Tc44 - 6 B2.3|6 nuclear encoded tRNA cysteine 44 (anticodon GCA) tRNA 12627 Mm.2531 NM_007685 ENSMUSG00000026124 Cfc1 AV265756|b2b970Clo|cryptic - 1|1 B cripto, FRL-1, cryptic family 1 protein-coding 102641637 Gm38567 - - 1|1 predicted gene, 38567 ncRNA 112066 Swq4 - - - spleen weight QTL 4 unknown 100034805 Pgia18 - - - proteoglycan induced arthritis 18 unknown 22027 Mm.87773 NM_011631 ENSMUSG00000020048 Hsp90b1 ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96 - 10 C1|10 43.05 cM heat shock protein 90, beta (Grp94), member 1 protein-coding 102632650 Gm30672 - - 2|2 predicted gene, 30672 protein-coding 258935 Mm.377756 NM_146933 ENSMUSG00000044025 Olfr790 MOR112-1 - 10|10 D3 olfactory receptor 790 protein-coding 20728 Mm.21642 NM_011461 ENSMUSG00000004359 Spic AU019198|C76795|Prf|Spi-C - 10|10 C1 Spi-C transcription factor (Spi-1/PU.1 related) protein-coding 75159 Mm.243854 NR_040478 ENSMUSG00000100589 4930533P14Rik - - 1|1 D RIKEN cDNA 4930533P14 gene ncRNA 102636345 Gm33438 - - 18|18 predicted gene, 33438 protein-coding 216445 Mm.227198 NM_146011 ENSMUSG00000040345 Arhgap9 AU043488 - 10|10 D3 Rho GTPase activating protein 9 protein-coding 102638121 XR_383843 Gm34759 - - 15 A1|15 predicted gene, 34759 ncRNA 108168028 XR_001780684 Gm46376 - - 12 E|12 predicted gene, 46376 ncRNA 105244079 Gm39757 - - 2|2 predicted gene, 39757 protein-coding 67750 Mm.33864 NM_026359 ENSMUSG00000021961 4930578I06Rik AI429111 - 14|14 D1 RIKEN cDNA 4930578I06 gene protein-coding 445267 Mm.398140 NR_004443 ENSMUSG00000087009 Nphs1os Nphs1as - 7|7 B1 nephrosis 1 homolog, nephrin, opposite strand ncRNA 111665 Igh-V12 V>H<12|VH12 - - immunoglobulin heavy chain (V12 family) other 108167408 XR_001778045 Gm45971 - - 7 A1|7 predicted gene, 45971 ncRNA 21147 T(2;6)97Dn T97Dn - - reciprocal translocation, Chr 2 and 6, Davisson 97 other 81701 Mm.231343 NM_152922 ENSMUSG00000015467 Egfl8 Ng3 - 17 B1|17 18.19 cM EGF-like domain 8 protein-coding 69784 Mm.271188 NM_001145198 ENSMUSG00000087651 1500009L16Rik 2700050C19Rik|OCC-1 - 10|10 C1 RIKEN cDNA 1500009L16 gene protein-coding 68844 XR_385029 ENSMUSG00000068067 1110057P08Rik - - 16|16 C3.3 RIKEN cDNA 1110057P08 gene ncRNA 100417343 Gm18546 - - 3|3 G3 farnesyl diphosphate synthetase pseudogene pseudo 16882 Mm.277136 NM_010716 ENSMUSG00000020697 Lig3 D11Wsu78e - 11 C|11 50.23 cM ligase III, DNA, ATP-dependent protein-coding 30059 Mm.21826 NM_013899 ENSMUSG00000027076 Timm10 Tim13|Timm13a - 2|2 D translocase of inner mitochondrial membrane 10 protein-coding 18408 Mm.200907 NM_181325 ENSMUSG00000031482 Slc25a15 D630044L02Rik|Ornt1 - 8|8 A2 solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15 protein-coding 27062 Mm.260881 NM_012061 ENSMUSG00000054423 Cadps AU067781|CAPS|CAPS1|mKIAA1121 - 14|14 A1 Ca2+-dependent secretion activator protein-coding 100035857 Tailq3 Tlq3 - - tail length QTL 3 unknown 105245102 LOC105245102 - - 12 E heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 100885 Mm.473122 AV276577 - - - expressed sequence AV276577 unknown 100417862 Gm14153 - - 2|2 G3 heterogeneous nuclear ribonucleoprotein H1 pseudogene pseudo 70948 Mm.219475 NM_027614 ENSMUSG00000035560 Wdr20rt 4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b - 12|12 C1 WD repeat domain 20, retrogene protein-coding 102635687 XR_391460 Gm32962 - - 7 B4|7 predicted gene, 32962 ncRNA 102635578 XR_871801 Gm32872 - - 10 B5.2|10 predicted gene, 32872 ncRNA 14166 Mm.269011 NM_010198 ENSMUSG00000042826 Fgf11 Fgf-11|Fhf-3|Fhf3 - 11|11 B3 fibroblast growth factor 11 protein-coding 78751 Mm.26377 NM_178404 ENSMUSG00000042851 Zc3h6 4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035 - 2|2 F1 zinc finger CCCH type containing 6 protein-coding 100417301 Gm18516 - - 7|7 A2 argininosuccinate synthetase 1 pseudogene pseudo 100534330 LOC100534330 - - 16|16 B4 RNA binding motif protein 39 pseudogene pseudo 109857 Mm.4512 NM_173047 ENSMUSG00000022947 Cbr3 1110001J05Rik|C81353 - 16 C4|16 54.58 cM carbonyl reductase 3 protein-coding 320355 Mm.99517 NM_177142 ENSMUSG00000032948 Lipi D930038D03Rik|lpd1 - 16|16 C3.1 lipase, member I protein-coding 380752 Mm.273724 NM_201357 ENSMUSG00000036613 Eipr1 D12Ertd604e|Tssc1 - 12 A2|12 11.26 cM EARP complex and GARP complex interacting protein 1 protein-coding 102633795 XR_375124 Gm31535 - - 2 G3|2 predicted gene, 31535 ncRNA 71745 Mm.291707 NM_029402 ENSMUSG00000024231 Cul2 1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106 - 18|18 A1 cullin 2 protein-coding 71951 Mm.77066 NM_172412 ENSMUSG00000029510 Gpc2 2410016G05Rik - 5|5 G2 glypican 2 (cerebroglycan) protein-coding 100035969 Lbn10 LBN17.1 - 17 17.98 cM long bones 10 unknown 100628621 NR_039537 ENSMUSG00000106655 Mir3961 mmu-mir-3961 - 13 C3|13 43.68 cM microRNA 3961 ncRNA 216148 Mm.39424 NM_001024539 ENSMUSG00000020312 Shc2 6720466E06|SCK|ShcB|Sli - 10 C1|10 39.72 cM SHC (Src homology 2 domain containing) transforming protein 2 protein-coding 14797 Mm.180013 NM_010347 ENSMUSG00000054452 Aes AL024115|Esp1|Grg|Grg-5|Grg5|Tle5 - 10 C1|10 39.72 cM amino-terminal enhancer of split protein-coding 108121 Mm.379289 NM_024187 ENSMUSG00000061613 U2af1 2010107D16Rik - 17|17 B1 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 protein-coding 21061 T(11B1;16B5)233Dn T(11;16)233Dn|T233Dn - - reciprocal translocation, Chr 11, cytogenetic band B1 and Chr 16, cytogenetic band B5, Davisson 233 other 18950 Mm.17932 NM_013632 ENSMUSG00000115338 Pnp AL024301|AU015798|Np|Np-1|Np-2|Pnp1 - 14 C1|14 26.31 cM purine-nucleoside phosphorylase protein-coding 69736 Mm.222184 NM_027191 ENSMUSG00000035351 Nup37 2410003L22Rik|2810039M17Rik - 10|10 C1 nucleoporin 37 protein-coding 73142 3110035F07Rik - - 14|14 RIKEN cDNA 3110035F07 gene protein-coding 20813 Mm.363404 NM_009273 ENSMUSG00000009549 Srp14 14kDa|AW536328 - 2|2 E5 signal recognition particle 14 protein-coding 101055862 XM_011242027 ENSMUSG00000109655 Gm29735 - - 7 F5|7 predicted gene, 29735 protein-coding 192199 Mm.42202 NM_138683 ENSMUSG00000028871 Rspo1 R-spondin|Rspondin - 4|4 D2.2 R-spondin 1 protein-coding 629152 Gm6951 EG629152 - 19 C3|19 stearoyl-coenzyme A desaturase pseudogene pseudo 108168531 Gm46713 - - Y D|Y multifunctional methyltransferase subunit TRM112-like protein pseudogene pseudo 61476 D7Mit134 - - 7 73.18 cM DNA segment, Chr 7, Massachusetts Institute of Technology 134 unknown 108167370 XM_017315655 Gm45965 - - 13 B3|13 predicted gene, 45965 protein-coding 19042 Mm.261045 NM_008910 ENSMUSG00000021096 Ppm1a 2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1 - 12|12 C3 protein phosphatase 1A, magnesium dependent, alpha isoform protein-coding 100043295 Gm15500 - - 7 F1|7 ribosomal protein L5 pseudogene pseudo 116621 Bits2 - - 6 37.96 cM bitterness sensitivity 2 unknown 433064 Gm17748 - - 17|17 A1 peptidyl-prolyl cis-trans isomerase H-like pseudo 665029 Gm12704 - - 4|4 C5 predicted gene 12704 pseudo 75913 Mm.474799 NR_038053 4930579G18Rik - - 14|14 C2 RIKEN cDNA 4930579G18 gene ncRNA 404591 AL117728 - - - expressed sequence AL117728 unknown 110120553 LOC110120553 - - - VISTA enhancer mm1097 biological-region 67067 Mm.371623 NM_025946 ENSMUSG00000067847 Romo1 2010100O12Rik|AI853864 - 2|2 H1 reactive oxygen species modulator 1 protein-coding 22361 Mm.27154 NM_011704 ENSMUSG00000037440 Vnn1 V-1 - 10|10 A4 vanin 1 protein-coding 52450 D10Ggc2e - - - DNA segment, Chr 10, G. Consalez 2, expressed unknown 111554 Pmv47 Pmv-47 - - polytropic murine leukemia virus 47 other 100038814 Slt1 - - - susceptibility to spontaneously occurring lung cancer 1 unknown 547420 Trav7-3 Gm13946 - 14|14 C2 T cell receptor alpha variable 7-3 other 105243904 XR_865343 Gm39625 - - 1 B|1 predicted gene, 39625 ncRNA 93736 Mm.395281 NM_033565 ENSMUSG00000049470 Aff4 AF5Q31|Alf4|Laf4l|MCEF - 11|11 B1.3 AF4/FMR2 family, member 4 protein-coding 52050 DXGgc4e - - - DNA segment, Chr X, G. Consalez 4, expressed unknown 18655 Mm.316355 NM_008828 ENSMUSG00000062070 Pgk1 Pgk-1 - X D|X 47.36 cM phosphoglycerate kinase 1 protein-coding 100416235 Gm17990 - - 7|7 E3 ribosomal protein 10 pseudogene pseudo 109907 Tpre - - - pre-T cell alloantigen protein-coding 116609 D7Tem11 - - - DNA segment, Chr 7, Tempel 11 unknown 100036145 Brmth7 - - - behavioral response to methamphetamines 7 unknown 111578 Xmv61 Xmv-61 - - xenotropic murine leukemia virus 61 other 112221 Wt10q1 - - - body weight, 10 weeks, QTL 1 unknown 69142 Mm.171061 NM_026956 ENSMUSG00000051906 Cd209f 1810029C22Rik|AI647041|SIGNR8 - 8|8 A1.1 CD209f antigen protein-coding 629016 Mm.440800 NM_001038651 ENSMUSG00000098905 Zfp953 E130120F12Rik - 13|13 B3 zinc finger protein 953 protein-coding 102639303 Gm28353 - - Y|Y predicted gene 28353 protein-coding 102640270 Gm36381 - - 8|8 predicted gene, 36381 ncRNA 20597 Mm.4628 NM_011421 ENSMUSG00000037049 Smpd1 A-SMase|ASM|Zn-SMase|aSMase - 7 E3|7 55.9 cM sphingomyelin phosphodiesterase 1, acid lysosomal protein-coding 102467267 n-TCgca2 n-Tc2 - 6 B2.3|6 nuclear encoded tRNA cysteine 2 (anticodon GCA) tRNA 436193 Fthl17-ps3 EG436193|Gm5753 - X|X A1.1 ferritin, heavy polypeptide-like 17, pseudogene 3 pseudo 18972 Mm.35788 NM_008894 ENSMUSG00000020471 Pold2 50kDa|p50|po1D2 - 11|11 A1 polymerase (DNA directed), delta 2, regulatory subunit protein-coding 20494 Mm.3500 NM_011388 ENSMUSG00000023073 Slc10a2 9130221J18Rik|AI605518|ASBT|IBAT|ISBT - 8 A1.1|8 2.16 cM solute carrier family 10, member 2 protein-coding 102637931 XR_389056 Gm34620 - - 11 E1|11 predicted gene, 34620 ncRNA 62589 D13Mit104 - - 13 50.13 cM DNA segment, Chr 13, Massachusetts Institute of Technology 104 unknown 93840 Mm.36148 NM_033509 ENSMUSG00000026556 Vangl2 C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska|stbm|strabismus - 1 H3|1 79.54 cM VANGL planar cell polarity 2 protein-coding 319387 Mm.273631 NM_198702 ENSMUSG00000037605 Adgrl3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768 - 5|5 D-E1 adhesion G protein-coupled receptor L3 protein-coding 108169060 XM_017321226 LOC108169060 - - 5 F zinc finger protein 431-like protein-coding 105245608 XR_873867 Gm41039 - - 13 D1|13 predicted gene, 41039 ncRNA 60941 DXMit37 - - X 59.1 cM DNA segment, Chr X, Massachusetts Institute of Technology 37 unknown 622523 Mm.390032 NR_040690 ENSMUSG00000110231 Gm6329 EG622523 - 8|8 B1.1 predicted gene 6329 ncRNA 102465620 NR_105992 ENSMUSG00000099060 Mir7025 Gm27860|mmu-mir-7025 - 5|5 C3.3 microRNA 7025 ncRNA 102631582 Gm29884 - - 10 A4|10 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog pseudo 112079 Oriq1 - - - ovulation rate QTL 1 unknown 20650 Mm.30228 NM_009229 ENSMUSG00000041308 Sntb2 Snt2 - 8 D3|8 53.38 cM syntrophin, basic 2 protein-coding 432730 Gm5446 EG432730 - 13|13 A2 predicted gene 5446 pseudo 16004 Mm.26553 NM_010515 ENSMUSG00000023830 Igf2r AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300 - 17 A1|17 8.64 cM insulin-like growth factor 2 receptor protein-coding 330428 Mm.44237 NM_001081186 ENSMUSG00000030160 Tmem52b D630042F21Rik - 6|6 F3 transmembrane protein 52B protein-coding 111590 Pmv41 Pmv-41 - - polytropic murine leukemia virus 41 other 243961 Mm.360368 NM_001034115 ENSMUSG00000038738 Shank1 - - 7|7 B3 SH3 and multiple ankyrin repeat domains 1 protein-coding 93927 D16Jhu66 553H14.SP6 - - DNA segment, Chr 16, Johns Hopkins University 66 unknown 21926 Mm.1293 NM_013693 ENSMUSG00000024401 Tnf DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f - 17 B1|17 18.59 cM tumor necrosis factor protein-coding 66632 Mm.117809 NM_025675 ENSMUSG00000057147 Dph6 5730421E18Rik|Atpbd4 - 2|2 E4 diphthamine biosynthesis 6 protein-coding 77620 C030045M22Rik - - 12|12 RIKEN cDNA C030045M22 gene protein-coding 102633965 Gm31662 - - 15|15 predicted gene, 31662 protein-coding 105244723 XR_868342 Gm40281 - - 5 B2|5 predicted gene, 40281 ncRNA 105244859 XR_872682 ENSMUSG00000113832 Gm40392 - - 12 A3|12 predicted gene, 40392 ncRNA 98744 BB143336 - - - expressed sequence BB143336 unknown 73379 Mm.373589 NM_028523 ENSMUSG00000035107 Dcbld2 1700055P21Rik|AW146002|CLCP1|Esdn - 16|16 C1.2 discoidin, CUB and LCCL domain containing 2 protein-coding 338521 Mm.41083 NM_178086 ENSMUSG00000033579 Fa2h FAAH|Faxdc1|G630055L08Rik - 8|8 E1 fatty acid 2-hydroxylase protein-coding 100041999 Gm3617 - - 1 B|1 ribosomal protein L17 pseudogene pseudo 22722 Mm.2095 NM_009564 ENSMUSG00000027551 Zfp64 - - 2 H3|2 88.99 cM zinc finger protein 64 protein-coding 20486 skt - - - small with kinky tail unknown 100041971 Mm.448716 Gm3598 - - 8 B3.3|8 predicted gene 3598 protein-coding 546917 Gm15707 EG546917 - 6 G3|6 lactate dehydrogenase A pseudogene pseudo 100042125 Gm15535 - - 3 F1|3 predicted gene 15535 ncRNA 105244499 XR_867467 Gm40096 - - 3 F2.1|3 predicted gene, 40096 ncRNA 606725 Gm6078 EG606725|Ppia-ps18_172.1 - 18|18 A1 peptidylprolyl isomerase A pseudogene 18_172.1 pseudo 404515 Olfr1455-ps1 - - 19|19 A olfactory receptor 1455, pseudogene 1 pseudo 100038363 Mm.30815 NR_030718 ENSMUSG00000078122 F630028O10Rik Gm14924|mir-223 - X C3|X RIKEN cDNA F630028O10 gene ncRNA 102637110 Gm34005 - - 9 D|9 predicted gene, 34005 pseudo 100900 Mm.200231 NM_153571 ENSMUSG00000043510 Hscb AI325508|AW049829|Hsc20 - 5|5 F HscB iron-sulfur cluster co-chaperone protein-coding 56327 Mm.21071 NM_019722 ENSMUSG00000024944 Arl2 2610009M23Rik|AI115441|AW553335 - 19|19 A ADP-ribosylation factor-like 2 protein-coding 70835 Mm.157351 NM_133731 ENSMUSG00000045027 Prss22 4733401N09Rik|BSSP-4|SP001LA - 17 A3.3|17 12.18 cM protease, serine 22 protein-coding 100035093 Hdlcl1 - - 7 61.37 cM HDL cholesterol level 1 unknown 414123 Mm.45103 XR_866566 Mir670hg E530001K10Rik - 2 E1|2 MIR670 host gene (non-protein coding) unknown 21281 T(9;10)62H T62H - - reciprocal translocation, Chr 9 and 10, Harwell 62 other 170763 Mm.491205 NM_133228 ENSMUSG00000097333 Zfp87 2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72 - 13 B3|13 34.54 cM zinc finger protein 87 protein-coding 110120477 LOC110120477 - - - VISTA enhancer mm1548 biological-region 110498 Tcra-V1.8 - - - T cell receptor alpha, variable 1.8 other 81905 Mm.357990 NM_133190 ENSMUSG00000053395 Cacng8 - - 7 A1|7 1.98 cM calcium channel, voltage-dependent, gamma subunit 8 protein-coding 66569 Mm.281887 NM_025638 ENSMUSG00000061666 Gdpd1 2610020H15Rik - 11|11 C glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 71688 0610042B02Rik - - - RIKEN cDNA 0610042B02 gene protein-coding 72077 Mm.195555 NM_028087 ENSMUSG00000032226 Gcnt3 2010013H22Rik|2210021I22Rik|2210401J11Rik - 9|9 D glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 108494 Emvc2 Emvc-2 - - endogenous ecotropic MuLV, castaneus type 2 other 14764 Mm.470721 NM_009962 ENSMUSG00000034117 Ptgdr2 Crth2|Gpr44|Grp45 - 19|19 A prostaglandin D2 receptor 2 protein-coding 545829 Gm5874 EG545829 - 6|6 A2 predicted gene 5874 pseudo 14012 Mm.33240 NM_007962 ENSMUSG00000032092 Mpzl2 Eva|Eva1 - 9 A5.2|9 24.84 cM myelin protein zero-like 2 protein-coding 622334 Gm12900 - - 4|4 D2.2 predicted gene 12900 pseudo 100416052 Gm13435 - - 2|2 B nucleoporin 50 pseudogene pseudo 102635011 XR_383454 Gm32454 - - 14 C3|14 predicted gene, 32454 ncRNA 105243868 XR_865214 Gm28153 - - 1 A3|1 predicted gene 28153 ncRNA 105242401 XM_003688832 LOC105242401 - - 7 B3 uncharacterized protein C2orf78 homolog protein-coding 60730 DXMit89 - - X 4.73 cM DNA segment, Chr X, Massachusetts Institute of Technology 89 unknown 100038676 7120432I05Rik - - 16 C3.3|16 RIKEN cDNA 7120432I05 gene unknown 102634423 XR_874420 Gm32008 - - 14 A3|14 predicted gene, 32008 ncRNA 105245644 XR_873981 Gm41072 - - 13 D2.2|13 predicted gene, 41072 ncRNA 105245804 XR_874770 Gm41194 - - 14 D2|14 predicted gene, 41194 ncRNA 208366 Mm.35545 NM_145938 ENSMUSG00000021418 Rpp40 D8Bwg1265e|Rnasep1 - 13|13 A3.3 ribonuclease P 40 subunit protein-coding 73406 1700067A10Rik - - 14|14 RIKEN cDNA 1700067A10 gene protein-coding 102631566 XR_382840 Gm29870 - - 13 D1|13 predicted gene, 29870 ncRNA 76950 Mm.102196 2900001G08Rik - - 17|17 RIKEN cDNA 2900001G08 gene protein-coding 102632285 Gm38443 - - 7|7 predicted gene, 38443 protein-coding 102640550 XR_373729 Gm36586 - - 1 H4|1 predicted gene, 36586 ncRNA 100862262 Gm21599 - - Y|Y predicted gene, 21599 protein-coding 74187 Mm.28382 NM_028805 ENSMUSG00000031787 Katnb1 2410003J24Rik|KAT - 8|8 C5 katanin p80 (WD40-containing) subunit B 1 protein-coding 258877 Mm.223291 NM_146877 ENSMUSG00000050763 Olfr1395 MOR277-1 - 11|11 B1.2 olfactory receptor 1395 protein-coding 791345 Mm.263189 Gm9960 - - - predicted gene 9960 unknown 102633401 XR_385761 Gm31235 - - 17 E2|17 predicted gene, 31235 ncRNA 105243190 XR_870432 Gm39179 - - 8 B1.3|8 predicted gene, 39179 ncRNA 100502601 Mm.399434 NR_040357 Gm19276 - - 15 A1|15 5.35 cM predicted gene, 19276 ncRNA 320453 Mm.442212 NR_040279 ENSMUSG00000086552 Dlx4os A730090H04Rik|Dlx4as - 11|11 D distal-less homeobox 4, opposite strand ncRNA 102637741 XR_389374 Gm34475 - - 5 E3|5 predicted gene, 34475 ncRNA 100043856 NM_001310621 ENSMUSG00000100058 Scgb2b18 Abpbg18|Gm4692 - 7 B1|7 secretoglobin, family 2B, member 18 protein-coding 100862474 LOC100862474 - - - coatomer subunit delta-like pseudo 110890 H2-T18rs Tla-rs - - histocompatibility 2, T region locus 18, related sequences protein-coding 100503810 NR_151527 ENSMUSG00000085395 Gm13056 - - 4 D3|4 73.62 cM predicted gene 13056 ncRNA 224454 Mm.487663 NM_146073 ENSMUSG00000034265 Zdhhc14 B530001K09Rik|New1cp - 17|17 A1 zinc finger, DHHC domain containing 14 protein-coding 102465192 NR_105789 ENSMUSG00000099149 Mir6370 Gm27480|mmu-mir-6370 - 6|6 A2 microRNA 6370 ncRNA 104196 Ea5 Ea-5|H-5 - - erythrocyte antigen 5 protein-coding 102638656 Gm35168 - - 11|11 predicted gene, 35168 ncRNA 114292 Manh25 QTL-SH19.1 - - mandible shape 25 unknown 235627 Mm.335481 NM_183276 ENSMUSG00000056724 Nbeal2 1110014F23Rik|BC042396|mKIAA0540 - 9|9 F2 neurobeachin-like 2 protein-coding 76800 Mm.259620 NM_029749 ENSMUSG00000051306 Usp42 2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e - 5 G2|5 82.5 cM ubiquitin specific peptidase 42 protein-coding 100039182 XM_011244255 Gm16505 - - 13|13 A1 predicted gene 16505 protein-coding 100503887 Gm17067 - - 7|7 28.25 cM predicted gene 17067 pseudo 70225 Mm.340195 NM_027351 ENSMUSG00000026035 Ppil3 2310076N22Rik|2510026K04Rik|Cyp10l - 1|1 C1.3 peptidylprolyl isomerase (cyclophilin)-like 3 protein-coding 213895 Mm.25269 NM_194339 ENSMUSG00000030138 Bms1 AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187 - 6|6 F1 BMS1, ribosome biogenesis factor protein-coding 493134 Lvrq2 - - - liver weight QTL 2 unknown 108169107 XR_001785040 Gm46937 - - 5 B3|5 predicted gene, 46937 ncRNA 14038 Mm.1650 NM_007969 ENSMUSG00000000983 Wfdc18 Expi|Kal1|WDNM1 - 11|11 C WAP four-disulfide core domain 18 protein-coding 61111 D2Mit483 - - 2 57.31 cM DNA Segment, Chr 2 Massachusetts Institute of Technology 483 unknown 15985 Mm.2987 NM_008339 ENSMUSG00000040592 Cd79b B29|Ig-beta|Igb|Igbeta - 11 E1|11 68.89 cM CD79B antigen protein-coding 633361 Gm14480 - - X A1.1|X calmodulin 2 pseudogene pseudo 101255 AU022706 - - - expressed sequence AU022706 unknown 17716 ND1 - - - NADH dehydrogenase subunit 1 protein-coding 69537 Mm.20169 NM_027109 ENSMUSG00000019088 Dnase1l1 2310005K03Rik|AI324885|Dnase1ll|Dnasex|Dnl1ll|G4.8 - X A7.3|X 37.94 cM deoxyribonuclease 1-like 1 protein-coding 102132 Mm.37632 NR_126558 ENSMUSG00000096957 E230013L22Rik AI645545 - 8 A1.1|8 RIKEN cDNA E230013L22 gene ncRNA 258508 Mm.377544 NM_146515 ENSMUSG00000061972 Olfr99 MOR156-1 - 17|17 B1 olfactory receptor 99 protein-coding 108168689 XM_017318930 LOC108168689 - - - glutamic acid-rich protein-like protein-coding 433749 Gm12844 - - 4|4 D2.1 ras homolog gene family, member A pseudogene pseudo 100862003 Gm21392 - - 6|6 predicted gene, 21392 pseudo 105242593 XR_868784 Gm20618 - - 6 A1|6 2.59 cM predicted gene 20618 ncRNA 30821 DXChri1 - - - DNA segment, Chr X, Children's Hospital Research Institute 1 unknown 232972 Mm.293074 NM_199150 ENSMUSG00000045587 BC049730 Lypd10 - 7|7 A3 cDNA sequence BC049730 protein-coding 67073 Mm.248647 NM_025951 ENSMUSG00000029186 Pi4k2b 2610042N09Rik|4933409G22Rik - 5|5 C1 phosphatidylinositol 4-kinase type 2 beta protein-coding 100035692 Mpcp6 - - - myeloid progenitor cell proliferation 6 unknown 664980 Gm7435 EG664980 - 9|9 B ring finger protein 19A pseudogene pseudo 110308 Mm.451847 NM_027011 ENSMUSG00000061527 Krt5 3300001P10Rik|AW146334|CK5|K5|Krt2-5|Tfip8 - 15 F2|15 56.98 cM keratin 5 protein-coding 52160 D15Ggc2e - - - DNA segment, Chr 15, G. Consalez 2, expressed unknown 26431 Mm.195632 NM_019834 ENSMUSG00000041890 Git2 1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148 - 5|5 F G protein-coupled receptor kinase-interactor 2 protein-coding 60964 D3Mit329 - - 3 7.66 cM DNA Segment, Chr 3 Massachusetts Institute of Technology 329 unknown 101056071 Mm.450591 LOC101056071 - - - uncharacterized LOC101056071 protein-coding 75368 Mm.108728 NM_001204904 ENSMUSG00000086277 4930558K02Rik - - 1|1 H2.1 RIKEN cDNA 4930558K02 gene protein-coding 102633570 Gm21752 - - Y|Y predicted gene, 21752 protein-coding 105245247 XR_871909 Gm40726 - - 10 C1|10 predicted gene, 40726 ncRNA 69864 Mm.45641 NM_027239 ENSMUSG00000013653 1810065E05Rik AV047390 - 11|11 B1.3 RIKEN cDNA 1810065E05 gene protein-coding 16924 Mm.440403 NM_010727 ENSMUSG00000029228 Lnx1 Lnx - 5|5 C3.3 ligand of numb-protein X 1 protein-coding 19471 Rb(11.13)6Lub Rb6Lub - - Robertsonian translocation, Chr 11 and 13, Lubeck 6 other 61250 D2Mit123 - - 2 33.74 cM DNA segment, Chr 2, Massachusetts Institute of Technology 123 unknown 102632605 XR_378928 Gm30635 - - 8 B1.1|8 predicted gene, 30635 ncRNA 50817 Mm.216072 NM_015830 ENSMUSG00000037326 Capn15 Solh - 17|17 A3.3 calpain 15 protein-coding 102638693 XR_377329 Gm35194 - - 6 A1|6 predicted gene, 35194 ncRNA 107650 Mm.217222 NM_175356 ENSMUSG00000038861 Pi4kb ESTM41|PI4K-beta|PI4Kbeta|Pik4cb - 3|3 F2.1 phosphatidylinositol 4-kinase beta protein-coding 21043 T(10;14)8Rk T8Rk - - reciprocal translocation, Chr 10 and 14, Roderick 8 other 100043216 NM_001100446 ENSMUSG00000081218 Gm4297 - - X A2|X predicted gene 4297 protein-coding 105244756 Mm.417661 XR_868455 Gm40309 Gm42724 - 5 C3.1|5 predicted gene, 40309 ncRNA 69674 Mm.390387 NM_027162 ENSMUSG00000020743 Mif4gd 1110014L05Rik|2310075G12Rik - 11|11 E2 MIF4G domain containing protein-coding 102639629 XR_391594 Gm35894 - - 7 C|7 predicted gene, 35894 ncRNA 109280089 LOC109280089 Mm799 - - VISTA enhancer mm799 biological-region 620240 Igkv8-26 Gm16945 - 6|6 C1 immunoglobulin kappa variable 8-26 other 102635172 Scgb1b8-ps Abpa8-ps - 7 B1|7 secretoglobin, family 1B, member 8, pseudogene pseudo 101017 AW822016 - - - expressed sequence AW822016 unknown 100534312 LOC100534312 - - X|X C3 shugoshin 1 pseudogene pseudo 102639007 XR_390394 Gm35429 - - 4 A1|4 predicted gene, 35429 ncRNA 105243746 XR_879406 Gm39552 - - Y A1|Y predicted gene, 39552 ncRNA 319321 B230220N19Rik - - 4|4 A5 RIKEN cDNA B230220N19 gene unknown 108168820 XM_017319394 Gm34294 - - 2|2 H3 predicted gene, 34294 ncRNA 27810 358A17R - - - DNA segment, 358A17R (Research Genetics) unknown 102636636 XR_390371 Gm33646 - - 4 A1|4 predicted gene, 33646 ncRNA 108168876 XR_001783869 Gm46809 - - 3 F1|3 predicted gene, 46809 ncRNA 22758 Mm.24124 NM_016684 ENSMUSG00000036721 Zscan12 2510038J07Rik|FPM315|Zfp96|mKIAA0426|zfp-96 - 13|13 A3.1 zinc finger and SCAN domain containing 12 protein-coding 67592 Mm.78654 NM_026262 ENSMUSG00000020299 4930524B15Rik - - 11|11 A4 RIKEN cDNA 4930524B15 gene protein-coding 62561 D12Mit117 - - 12 43.32 cM DNA segment, Chr 12, Massachusetts Institute of Technology 117 unknown 258305 Mm.377425 NM_146308 ENSMUSG00000051190 Olfr1356 MOR142-1|MOR142-2_p - 10|10 C1 olfactory receptor 1356 protein-coding 78224 4930571N24Rik - - - RIKEN cDNA 4930571N24 gene protein-coding 22306 Mm.458977 NM_009490 ENSMUSG00000070847 Vmn2r30 V2r15 - 7|7 A1 vomeronasal 2, receptor 30 protein-coding 100036386 Ctrq2 Crtq-2 - - C. trachomatis resistance QTL 2 unknown 111786 Iapls1-10 - - - intracisternal A particle, lymphocyte specific 1-10 other 27605 D0Dcr2 - - - DNA segment, Derry C. Roopenian 2 unknown 28081 Mm.351688 NM_138598 ENSMUSG00000041629 Fam104a D11Wsu99e - 11 E2|11 79.12 cM family with sequence similarity 104, member A protein-coding 108168983 XR_001784482 Gm46874 - - 4 E1|4 predicted gene, 46874 ncRNA 105246003 XR_001781724 Gm41370 - - 15 E1|15 predicted gene, 41370 ncRNA 73495 Mm.159020 NM_028554 ENSMUSG00000035454 Samt3 1700072E05Rik - X|X C1 spermatogenesis associated multipass transmembrane protein 3 protein-coding 223780 Mm.210541 NM_182928 ENSMUSG00000054136 Adm2 Am2|IMD|Imdn - 15|15 E3 adrenomedullin 2 protein-coding 61285 D2Mit262 - - 2 77.26 cM DNA segment, Chr 2, Massachusetts Institute of Technology 262 unknown 140781 Mm.457983 NM_080728 ENSMUSG00000053093 Myh7 B-MHC|MYH-beta/slow|MyHC-I|Myhc-b|Myhcb|beta-MHC|betaMHC|myHC-beta|myHC-slow - 14 C3|14 28.01 cM myosin, heavy polypeptide 7, cardiac muscle, beta protein-coding 77480 Mm.250641 NM_001081378 ENSMUSG00000036333 Kidins220 3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250 - 12|12 A1.3 kinase D-interacting substrate 220 protein-coding 100504171 Gm17575 - - 3|3 41.79 cM predicted gene, 17575 ncRNA 102632767 Gm30755 - - 8|8 predicted gene, 30755 protein-coding 105245958 XR_875363 Gm41329 - - 15 D1|15 predicted gene, 41329 ncRNA 100416187 Gm14425 - - 2|2 C3 ribosomal protein 10 pseudogene pseudo 109279906 LOC109279906 Mm91 - - VISTA enhancer mm91 biological-region 545285 LOC545285 - - 19|19 C1 uncharacterized LOC545285 unknown 78050 Mm.437837 4930570N18Rik - - 1|1 RIKEN cDNA 4930570N18 gene protein-coding 667584 Gm8714 EG667584 - 18|18 D3 interferon inducible GTPase 1 pseudogene pseudo 280662 Mm.348786 NM_145146 ENSMUSG00000029369 Afm Alf|alpha-Alb - 5|5 E1 afamin protein-coding 780825 Ighv9-3 Gm9737 - 12|12 F1 immunoglobulin heavy variable V9-3 other 20248 Mm.482944 NM_009126 ENSMUSG00000044594 Serpinb3a 1110001H02Rik|1110013A16Rik|Scca2|Serpinb4|Sqn5 - 1|1 E2.1 serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3A protein-coding 62763 D17Mit174 - - 17 13.09 cM DNA segment, Chr 17, Massachusetts Institute of Technology 174 unknown 14299 Mm.249318 NM_019681 ENSMUSG00000062661 Ncs1 9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1 - 2|2 B neuronal calcium sensor 1 protein-coding 245527 Mm.189270 NM_175540 ENSMUSG00000034457 Eda2r 9430060M22Rik|TNFRSF27|Xedar - X|X C3 ectodysplasin A2 receptor protein-coding 105244673 Gm40238 - - 12 A1.1|12 metallothionein-2 pseudogene pseudo 102635635 XR_870430 Gm32923 - - 8 B1.1|8 predicted gene, 32923 ncRNA 100312526 Vmn1r-ps96 - - 13 A3.1|13 vomeronasal 1 receptor, pseudogene 96 pseudo 50768 Mm.125155 NM_015802 ENSMUSG00000031523 Dlc1 A730069N07Rik|Arhgap7|HP|STARD12|dlc-1 - 8 A4|8 23.05 cM deleted in liver cancer 1 protein-coding 100035758 Ofca1 - - - open field activity and conditioned avoidance 1 unknown 67356 Mm.131623 NM_026104 ENSMUSG00000027355 Tmco5 1700095F04Rik|Tmco5a - 2|2 E5 transmembrane and coiled-coil domains 5 protein-coding 62983 D17Mit234 - - 17 19.16 cM DNA Segment, Chr 17, Massachusetts Institute of Technology 234 unknown 94044 Mm.27990 NM_153516 ENSMUSG00000009112 Bcl2l13 BCL-RAMBO|E430016C20Rik|Mil-1|Mil1 - 6 F1|6 57.01 cM BCL2-like 13 (apoptosis facilitator) protein-coding 11491 Mm.27681 NM_009615 ENSMUSG00000052593 Adam17 CD156b|Tace - 12 A1.3|12 8.3 cM a disintegrin and metallopeptidase domain 17 protein-coding 245015 Mm.335382 Gm518 - - 9|9 E3.3 high mobility group box 1 pseudogene pseudo 103086 Mm.441348 AA409749 - - - expressed sequence AA409749 unknown 100043899 Mm.442535 NM_001099331 ENSMUSG00000078949 R3hdml - - 2|2 H3 R3H domain containing-like protein-coding 105242722 XR_869285 Gm38864 - - 6 D2-D3|6 predicted gene, 38864 ncRNA 666151 XM_017318658 Gm7950 EG666151 - X|X A5 predicted pseudogene 7950 protein-coding 105246788 Mm.444011 XR_878762 Gm34166 - - 5|5 F predicted gene, 34166 ncRNA 102637071 XR_379270 Gm33974 - - 9 A4|9 predicted gene, 33974 ncRNA 100417423 Gm18604 - - 17|17 B1 ADP-ribosylation factor-like 4A pseudogene pseudo 102632805 XR_001781182 Gm30783 - - 14 A3|14 predicted gene, 30783 ncRNA 103232 Mm.442410 Gm15122 - - - predicted gene 15122 unknown 102465765 NR_106119 ENSMUSG00000098885 Mir7659 Gm27433|mmu-mir-7659 - 10|10 C1 microRNA 7659 ncRNA 109279946 LOC109279946 Mm400 - - VISTA enhancer mm400 biological-region 258555 Mm.434360 NM_146562 ENSMUSG00000063842 Olfr862 MOR146-1 - 9|9 A3 olfactory receptor 862 protein-coding 97221 Mm.149954 C77623 - - - expressed sequence C77623 protein-coding 100036226 Aevm1 - - 8 34.43 cM autoimmune extremity vasculitis in MRL mice 1 unknown 76373 Mm.159732 NM_029584 ENSMUSG00000063535 Zfp773 2810409K11Rik - 7|7 A1 zinc finger protein 773 protein-coding 100036192 Abfw5 - - - abdominal fat weight 5 unknown 69109 Mm.341420 NM_197989 ENSMUSG00000049489 Fam58b 1810009O10Rik|Ccnq|Fam58a - 11|11 B5 family with sequence similarity 58, member B protein-coding 102638251 XR_881302 Gm12536 - - 4 B3|4 31.66 cM predicted gene 12536 protein-coding 56092 Mm.3692 NM_019539 ENSMUSG00000021440 Cts7 CTS1|Epcs24|Epcs71 - 13|13 B2 cathepsin 7 protein-coding 328277 Gm5085 - - 13 B3|13 predicted gene 5085 ncRNA 100628601 NR_039594 ENSMUSG00000092907 Mir5132 mir-5132|mmu-mir-5132|mu-mir-5132 - X A7.3|X 37.63 cM microRNA 5132 ncRNA 20612 Mm.1374 NM_011426 ENSMUSG00000027322 Siglec1 Cd169|Siglec-1|Sn - 2 F1|2 63.26 cM sialic acid binding Ig-like lectin 1, sialoadhesin protein-coding 61105 D1Mit508 - - 1 76.84 cM DNA Segment, Chr 1 Massachusetts Institute of Technology 508 unknown 102637729 Gm28355 - - Y|Y predicted gene 28355 ncRNA 493081 Pgia19 - - - proteoglycan induced arthritis 19 unknown 100042715 Mm.291093 NM_001177589 Gm3985 - - 8|8 A3 predicted gene 3985 protein-coding 61543 D9Mit130 - - 9 25.91 cM DNA segment, Chr 9, Massachusetts Institute of Technology 130 unknown 75283 Mm.195735 NM_029235 4930556L07Rik 1700020P01Rik|4930593I08Rik - 2|2 G3 RIKEN cDNA 4930556L07 gene ncRNA 319974 Mm.409595 NM_177047 ENSMUSG00000029673 Auts2 2700063G02Rik|A730011F23Rik|D830032G16Rik - 5|5 G2 autism susceptibility candidate 2 protein-coding 18071 Mm.2474 NM_010916 ENSMUSG00000051251 Nhlh1 Hen1|Nscl|Tal2|bHLHa35 - 1 H3|1 79.54 cM nescient helix loop helix 1 protein-coding 626870 Mm.369429 NM_001037928 ENSMUSG00000040978 Gm11992 - - 11|11 A1 predicted gene 11992 protein-coding 102632444 XR_381381 Gm30515 - - 12 A2|12 predicted gene, 30515 ncRNA 64209 Mm.29151 NM_022331 ENSMUSG00000031770 Herpud1 Herp|Mifl|SUP - 8|8 C5 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 protein-coding 109504 Alcp18 - - 11 75.93 cM alcohol preference locus 18, male specific unknown 108167665 LOC108167665 - - 1 D 60S ribosomal protein L17 pseudogene pseudo 629242 Mm.464102 XM_001480210 Gm6958 - - 16 C1.1|16 predicted gene 6958 protein-coding 100312575 Vmn1r-ps150 Gm11165 - 17 A3.2|17 vomeronasal 1 receptor, pseudogene 150 pseudo 102640469 XR_381736 4933435C09Rik - - 12|12 C3 RIKEN cDNA 4933435C09 gene ncRNA 72605 Mm.342160 NM_028296 ENSMUSG00000056158 Car10 2700029L05Rik|BB085816|Ca10 - 11|11 D carbonic anhydrase 10 protein-coding 66192 Mm.21705 NM_025410 ENSMUSG00000015289 Lage3 1110049G11Rik|Eso3|Itba2 - X|X A7.3 L antigen family, member 3 protein-coding 102633132 XR_001778635 Gm31036 Gm45813 - 8 C5|8 predicted gene, 31036 ncRNA 105245627 XR_873943 Gm41056 - - 13 D2.1|13 predicted gene, 41056 ncRNA 103900 AL022704 - - - expressed sequence AL022704 unknown 85075 D7Mit78 - - 7 21.37 cM DNA segment, Chr 7, Massachusetts Institute of Technology 78 unknown 11686 Mm.340329 NM_009659 ENSMUSG00000032807 Alox12b 12R-LOX|Aloxe2|e-LOX2 - 11 B3|11 42.38 cM arachidonate 12-lipoxygenase, 12R type protein-coding 669402 Gm9458 - - 1|1 B predicted gene 9458 pseudo 102634112 Gm20706 - - 6 A3.1|6 11.24 cM predicted gene 20706 pseudo 102635663 XR_001785284 Gm32943 - - 6 C3|6 predicted gene, 32943 ncRNA 72465 Mm.139115 NM_028245 ENSMUSG00000094870 Zfp131 2610109I01Rik|AW558871|Znf131 - 13|13 D2.3 zinc finger protein 131 protein-coding 102633823 XR_389765 Gm31555 - - 5 A3|5 predicted gene, 31555 ncRNA 546150 Mm.118635 NM_001024729 Gm5919 EG546150 - 9 E2|9 predicted gene 5919 unknown 18679 Mm.212889 NM_008832 ENSMUSG00000034055 Phka1 5330411D17|9830108K24Rik|Phka - X D|X 45.47 cM phosphorylase kinase alpha 1 protein-coding 170938 Mm.480419 NM_133358 ENSMUSG00000066880 Zfp617 Zfps11-6 - 8|8 B3.3 zinc finger protein 617 protein-coding 329513 Mm.473529 NM_177847 ENSMUSG00000056738 A730036I17Rik - - 2|2 F1 RIKEN cDNA A730036I17 gene ncRNA 102634888 XR_871788 Gm32364 - - 10 B5.1|10 predicted gene, 32364 ncRNA 232288 Mm.27789 NM_145148 ENSMUSG00000030064 Frmd4b 6030440G05Rik|C87375|GOBLIN|GRSP1|R74720 - 6|6 D3 FERM domain containing 4B protein-coding 75022 Mm.401957 NR_045460 4930471L23Rik - - 17|17 E1.3 RIKEN cDNA 4930471L23 gene ncRNA 12669 Mm.240607 NM_007698 ENSMUSG00000032773 Chrm1 Chrm-1|M1|M1R - 19|19 A cholinergic receptor, muscarinic 1, CNS protein-coding 51879 D3Ertd425e - - - DNA segment, Chr 3, ERATO Doi 425, expressed unknown 67430 Mm.347950 NM_026150 ENSMUSG00000020434 4921536K21Rik AV043724 - 11|11 A1 RIKEN cDNA 4921536K21 gene protein-coding 11448 Mm.4980 NM_009603 ENSMUSG00000014609 Chrne AChrepsilon|Acre|nAChRE - 11 B3|11 43.14 cM cholinergic receptor, nicotinic, epsilon polypeptide protein-coding 665836 Gm7814 EG665836 - 15|15 D1 predicted gene 7814 pseudo 102639241 XR_378387 Gm35597 - - 7 E2|7 predicted gene, 35597 ncRNA 53728 D17Zt4 D17Mia4 - - DNA segment, Chr 17, Zdenek Trachtulec 4 unknown 20423 Mm.57202 NM_009170 ENSMUSG00000002633 Shh 9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081|ShhNC - 5 B1|5 14.39 cM sonic hedgehog protein-coding 78656 Mm.45602 NM_030147 ENSMUSG00000003778 Brd8 2610007E11Rik|4432404P07Rik|SMAP - 18|18 B1 bromodomain containing 8 protein-coding 100035557 Moo2 Mobe2 - 13 34.54 cM modifier of obesity 2 unknown 108167969 XR_001780525 Gm46326 - - 12 A2|12 predicted gene, 46326 ncRNA 259039 Mm.377803 NM_147037 ENSMUSG00000058904 Olfr1413 MOR208-1 - 1|1 D olfactory receptor 1413 protein-coding 791363 Mm.25321 A730071L15Rik - - - RIKEN cDNA A730071L15Rik gene protein-coding 109280040 LOC109280040 Mm296 - - VISTA enhancer mm296 biological-region 638631 Vhq52.a23.68 - - 12|12 immunoglobulin heavy chain V region VHQ52.a23.68 other 69449 Mm.250447 NR_038001 ENSMUSG00000101968 1700027A15Rik - - 1|1 C3 RIKEN cDNA 1700027A15 gene ncRNA 666085 Mm.389810 NM_001081449 ENSMUSG00000096593 Vmn2r54 EG666085|Gm1496|Gm470 - 7 A1|7 vomeronasal 2, receptor 54 protein-coding 667526 Gm8684 EG667526|Hspd1-7p - 3|3 E3 heat shock protein 1 (chaperonin) pseudogene 7 pseudo 74351 Mm.45725 NM_001080981 ENSMUSG00000003360 Ddx23 3110082M05Rik|4921506D17Rik - 15|15 F1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 protein-coding 102639687 XR_379544 Gm35941 - - 9 C|9 predicted gene, 35941 ncRNA 102640394 Gm36463 - - 4|4 predicted gene, 36463 ncRNA 664851 Gm15538 EG664851 - 16|16 A1 predicted gene 15538 pseudo 105244770 Gm40322 - - 5|5 predicted gene, 40322 ncRNA 108389 Xmv4 Xmv-4 - - xenotropic murine leukemia virus 4 other 20775 Mm.296169 NM_009270 ENSMUSG00000022351 Sqle AI323792 - 15|15 D1 squalene epoxidase protein-coding 654359 Mm.439961 NR_110477 Gm12338 - - 11|11 B5 cytochrome c oxidase, subunit VIIc pseudogene pseudo 102633295 Gm15075 - - X F2|X 68.1 cM predicted gene 15075 pseudo 108167698 Gm46138 - - 9 E1|9 predicted gene, 46138 pseudo 100038690 Mm.384983 NR_131153 ENSMUSG00000114613 Gm10732 - - 13 D2.3|13 predicted gene 10732 ncRNA 100040194 Gm14688 - - X|X A7.1 predicted gene 14688 pseudo 245128 Mm.268551 NM_001004153 ENSMUSG00000054753 AU018091 - - 7|7 A1 expressed sequence AU018091 protein-coding 68791 1110050P16Rik - - 9|9 RIKEN cDNA 1110050P16 gene protein-coding 114265 Manh1 QTL-SH1.1 - - mandible shape 1 unknown 102467565 n-TKctt12 n-Tk12 - 17 A3.3|17 nuclear encoded tRNA lysine 12 (anticodon CTT) tRNA 100416268 Gm18010 - - 6|6 B2.3 predicted gene, 18010 pseudo 545767 Gm5869 EG545767 - 5|5 E1 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 100039163 Gm2076 - - 13 C3|13 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 246158 L1Md-Gf27 GF27 - - L1 repeat, Gf subfamily, member 27 other 436082 Gm5746 EG436082 - 9|9 D a disintegrin and metallopeptidase domain 4 pseudogene pseudo 258285 Mm.419238 NM_146288 ENSMUSG00000083947 Olfr122 MOR263-10 - 17|17 B1 olfactory receptor 122 protein-coding 108135 Rps6ka2b 90kDa - - ribosomal protein S6 kinase, polypeptide 2, D17Leh66b region protein-coding 105245093 XR_871418 Gm40591 - - 10 A1|10 predicted gene, 40591 ncRNA 110874 Ltrm4 Ltrm-4 - - LTR mink cell focus forming murine leukemia viral locus 4 protein-coding 96923 C86103 - - - expressed sequence C86103 unknown 102631848 Gm28371 - - Y|Y predicted gene 28371 protein-coding 109650 Lepq1 - - - leptin QTL 1 unknown 258022 Mm.377330 NM_001011802 ENSMUSG00000049758 Olfr1318 MOR245-16 - 2|2 E3 olfactory receptor 1318 protein-coding 102635959 Gm33163 - - Y|Y predicted gene, 33163 ncRNA 672828 Gm9578 - - 14 D3|14 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 321015 Mm.35670 NM_177314 ENSMUSG00000104234 5330439B14Rik - - 6|6 G2 RIKEN cDNA 5330439B14 gene ncRNA 102634193 XR_382354 Gm31835 - - 13 A5|13 predicted gene, 31835 ncRNA 109486 Cplaq4 - - 1 10.96 cM circadian period of locomotor activity 4 unknown 111899 Pltr1 - - - polytropic long terminal repeat containing proviral locus 1 other 319880 Mm.23047 NM_172051 ENSMUSG00000020023 Tmcc3 A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1 - 10|10 C2 transmembrane and coiled coil domains 3 protein-coding 100039885 Vmn1r-ps5 Gm2476 - 6|6 A1 vomeronasal 1 receptor, pseudogene 5 pseudo 258387 Mm.377472 NM_146392 ENSMUSG00000052417 Olfr720 MOR274-2 - 14|14 A1 olfactory receptor 720 protein-coding 108167982 XR_001780553 Gm46336 - - 12 A1.1|12 predicted gene, 46336 ncRNA 100038555 Mm.444788 NR_045885 ENSMUSG00000109722 Gm10578 - - 7 F3|7 predicted gene 10578 ncRNA 432946 Gm5469 EG432946 - 15|15 B3.1 heterogeneous nuclear ribonucleoprotein A3 pseudogene pseudo 78712 C630044B11Rik - - 13|13 RIKEN cDNA C630044B11 gene protein-coding 78067 5830426I08Rik - - 15|15 RIKEN cDNA 5830426I08 gene protein-coding 105246501 Mm.403904 NR_155289 A330094K24Rik - - 18|18 E3 RIKEN cDNA A330094K24 gene ncRNA 100217460 NR_028565 ENSMUSG00000065196 Snord85 MBII-251|Z50 - 4 D2.2|4 small nucleolar RNA, C/D box 85 snoRNA 100503704 Mm.480572 NR_037666 ENSMUSG00000097397 Gm16861 - - 16 A1|16 2.48 cM predicted gene, 16861 ncRNA 102633247 Gm31119 - - 19|19 predicted gene, 31119 ncRNA 320871 Mm.475463 NM_177280 ENSMUSG00000086844 B230206H07Rik - - 7|7 F5 RIKEN cDNA B230206H07 gene ncRNA 100503289 Mm.138279 XR_866843 ENSMUSG00000087029 Gm14133 - - 2 G3|2 73.8 cM predicted gene 14133 ncRNA 102466996 NR_106092 ENSMUSG00000104804 Mir7233 mmu-mir-7233 - 6|6 F3 microRNA 7233 ncRNA 102632838 XR_001781307 Gm30806 - - 14 D1|14 predicted gene, 30806 ncRNA 102637963 Gm12622 - - 11 B2|11 37.81 cM predicted gene 12622 pseudo 111007 Pgk1-ps4 Pgk-1ps4 - - phosphoglycerate kinase 1, pseudogene 4 pseudo 106316 AU015881 - - - expressed sequence AU015881 unknown 27591 D15H22S992E - - - DNA segment, Chr 15, human D22S992E unknown 56773 Mm.432506 NM_019950 ENSMUSG00000031952 Chst5 AI173964|GST-4|Gn6st-3|I-GlcNAc-6-ST - 8|8 E1 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 protein-coding 102637404 XR_868997 Gm26008 - - 6 B1|6 predicted gene, 26008 ncRNA 230405 Mm.246593 NM_177348 ENSMUSG00000045364 Ifne Ifn-tau-1|Ifne1|Ifnt1|Infe1 - 4 C4|4 42.04 cM interferon epsilon protein-coding 102639063 XR_388150 Gm35466 - - 8 E1|8 predicted gene, 35466 ncRNA 54391 Mm.7013 NM_019437 ENSMUSG00000024712 Rfk 0610038L10Rik|AF031381|KOI-4 - 19|19 B riboflavin kinase protein-coding 100041168 Gm20863 - - Y|Y predicted gene, 20863 protein-coding 100042293 Gm3774 - - 7|7 A1 predicted gene 3774 pseudo 101056210 XM_017318755 ENSMUSG00000100645 Gm28576 - - Y A1|Y predicted gene 28576 protein-coding 105244053 XR_865847 Gm39735 - - 1 H6|1 predicted gene, 39735 ncRNA 497114 Mm.425522 NM_001012307 ENSMUSG00000074446 Defa23 Defcr23 - 8|8 A2 defensin, alpha, 23 protein-coding 666983 Gm8403 EG666983 - 1|1 E2.3 eukaryotic translation elongation factor 1 alpha 1 pseudogene pseudo 70919 4921520J07Rik - - 7|7 RIKEN cDNA 4921520J07 gene protein-coding 105244912 XR_872791 Gm40435 - - 12 C2|12 predicted gene, 40435 ncRNA 100034867 Scc15 - - 11 37.81 cM colon tumor susceptibility 15 unknown 102638855 XR_866497 Gm35317 - - 2 C3|2 predicted gene, 35317 ncRNA 22287 Mm.2258 NM_011681 ENSMUSG00000024653 Scgb1a1 CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg - 19|19 A secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 105246815 Gm42039 - - 8|8 predicted gene, 42039 ncRNA 18791 Mm.154660 NM_008872 ENSMUSG00000031538 Plat AU020998|AW212668|D8Ertd2e|tPA - 8 A2|8 11.42 cM plasminogen activator, tissue protein-coding 105245910 XR_875114 ENSMUSG00000115428 Gm41290 - - 15 B3.1|15 predicted gene, 41290 ncRNA 100417828 Gm18851 - - 7|7 A1 zinc finger and SCAN domain containing 4C pseudogene pseudo 112294 Lmb2 - - - lupus in MRL and B6 F2 cross, QTL 2 unknown 68653 Mm.290725 NM_178614 ENSMUSG00000022437 Samm50 1110030L07Rik - 15|15 E2 SAMM50 sorting and assembly machinery component protein-coding 240638 Mm.74636 NM_172838 ENSMUSG00000009378 Slc16a12 3230401A21|AW210596 - 19|19 C1 solute carrier family 16 (monocarboxylic acid transporters), member 12 protein-coding 74384 Mm.458268 4932433N03Rik AI450317 - 9|9 RIKEN cDNA 4932433N03 gene protein-coding 111818 Iapls1-65 - - - intracisternal A particle, lymphocyte specific 1-65 other 102639104 LOC102639104 - - 5 E1 UDP-glucuronosyltransferase 2A1-like pseudo 100562 AB039976 - - - expressed sequence AB039976 protein-coding 100041449 Mm.301900 NM_001105160 ENSMUSG00000061292 Cyp3a59 - - 5 G3|5 cytochrome P450, family 3, subfamily a, polypeptide 59 protein-coding 67522 Mm.254797 NR_045287 ENSMUSG00000099474 1700097N02Rik - - 17|17 A3.3 RIKEN cDNA 1700097N02 gene ncRNA 100035162 Crhtaq1 - - - Crh transcript abundance QTL 1 unknown 102636856 Gm33810 - - 3|3 predicted gene, 33810 ncRNA 638453 Gm7238 EG638453 - 7 B3|7 predicted gene 7238 pseudo 100041025 Gm3102 - - 14|14 C1 predicted gene 3102 pseudo 100417141 Gm18420 - - 15|15 A1 mediator complex subunit 27 pseudogene pseudo 100039782 Gm10709 - - 9|9 A1 ribosomal protein L29 pseudogene pseudo 100418322 Gm19140 - - 8|8 A4 ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog pseudogene pseudo 238963 Gm4939 EG238963 - 14|14 A2 vacuolar protein sorting 4b pseudogene pseudo 73197 3110056J03Rik - - - RIKEN cDNA 3110056J03 gene protein-coding 672934 Gm9585 - - 10|10 D2 LIM-domain containing, protein kinase pseudogene pseudo 105244909 Gm40432 - - 12|12 predicted gene, 40432 ncRNA 15019 Mm.486287 NM_023124 H2-Q8 H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8 - 17 B1|17 histocompatibility 2, Q region locus 8 protein-coding 12822 Mm.4352 NM_009929 ENSMUSG00000001435 Col18a1 - - 10 C1|10 39.72 cM collagen, type XVIII, alpha 1 protein-coding 66172 Mm.46424 NM_025397 ENSMUSG00000018923 Med11 1110030J09Rik|AI465144|AW545069 - 11|11 B3 mediator complex subunit 11 protein-coding 100043269 Rps19-ps1 Gm4327 - 14 C2|14 ribosomal protein S19, pseudogene 1 pseudo 619743 Igkv4-56 Gm16992|ao4 - 6|6 C1 immunoglobulin kappa chain variable 4-56 pseudo 52036 Mm.284686 NM_028999 ENSMUSG00000024908 Ppp6r3 4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558 - 19 A|19 3.21 cM protein phosphatase 6, regulatory subunit 3 protein-coding 12222 bt2 bt-2 - - belted 2 unknown 14082 Mm.5126 NM_010175 ENSMUSG00000031077 Fadd Mort1/FADD - 7 F5|7 88.85 cM Fas (TNFRSF6)-associated via death domain protein-coding 210973 Mm.57295 NM_145958 ENSMUSG00000059486 Kbtbd2 BC022962|Bklhd1|mKIAA1489 - 6|6 B3 kelch repeat and BTB (POZ) domain containing 2 protein-coding 72479 Mm.272905 NM_024255 ENSMUSG00000028383 Hsdl2 2610207I16Rik - 4|4 B3 hydroxysteroid dehydrogenase like 2 protein-coding 75835 Mm.159597 NM_029460 ENSMUSG00000074164 Vmn2r-ps54 1700108E19Rik|4930562N12Rik|Casr-rs5|Gm10948|Gprc2a-rs5 - 7 B3|7 vomeronasal 2, receptor, pseudogene 54 pseudo 54721 Mm.20249 NM_018793 ENSMUSG00000032175 Tyk2 JTK1 - 9|9 A3 tyrosine kinase 2 protein-coding 98483 D1Mgi53 AI987788 - - DNA Segment, Chr 1, Mouse Genome Informatics 53 unknown 109280137 LOC109280137 Mm1315 - - VISTA enhancer mm1315 biological-region 105243735 XR_878285 Gm39545 - - X F3|X predicted gene, 39545 ncRNA 231470 Mm.291120 NM_175473 ENSMUSG00000034687 Fras1 E130113P14Rik|bl|mKIAA1500 - 5|5 E3 Fraser extracellular matrix complex subunit 1 protein-coding 100040190 Gm2654 - - 13 A5|13 pseudouridylate synthase 7 homolog pseudogene pseudo 102632461 XR_384505 Gm30528 - - 15 F3|15 predicted gene, 30528 ncRNA 109674 Mm.274335 NM_028779 ENSMUSG00000027889 Ampd2 1200014F01Rik|AI552571|Ampd-2|m4521Dajl - 3 F2.3|3 46.83 cM adenosine monophosphate deaminase 2 protein-coding 664792 Gm7341 EG664792 - 1|1 A1 solute carrier family 35 member E3 pseudogene pseudo 100035921 Bmgr4 - - - bone marrow graft rejection 4 unknown 102636222 XR_388800 Gm33351 - - 11 B4|11 predicted gene, 33351 ncRNA 27485 29S - - - DNA segment, 29S unknown 667101 Gm8456 EG667101 - 13|13 C3 predicted gene 8456 pseudo 433208 Mm.430770 NM_001034886 D030046N08Rik EG433208|Gm15955 - 18 E4|18 RIKEN cDNA D030046N08 gene protein-coding 15364 Mm.157190 NM_010441 ENSMUSG00000056758 Hmga2 9430083A20Rik|HMGI-C|Hmgic|pg|pygmy - 10 D2|10 67.94 cM high mobility group AT-hook 2 protein-coding 207213 Mm.425165 NM_148949 ENSMUSG00000094084 Tdpoz1 2cpoz56|Mapp2|Spopl1 - 3|3 F2.1 TD and POZ domain containing 1 protein-coding 16596 Mm.4847 NM_010635 ENSMUSG00000054191 Klf1 Eklf|Nan - 8 41.3 cM|8 C3 Kruppel-like factor 1 (erythroid) protein-coding 56207 Mm.261004 NM_019562 ENSMUSG00000018189 Uchl5 5830413B11Rik|Uch37 - 1 F|1 62.54 cM ubiquitin carboxyl-terminal esterase L5 protein-coding 60797 D3Mit75 - - 3 43.73 cM DNA segment, Chr 3, Massachusetts Institute of Technology 75 unknown 100041094 Gm3136 - - 6|6 A3.1 zinc finger and SCAN domain containing 5B pseudogene pseudo 105245223 Gm40707 - - 10|10 predicted gene, 40707 ncRNA 61844 D1Mit417 - - 1 50.34 cM DNA segment, Chr 1, Massachusetts Institute of Technology 417 unknown 71901 Mm.39215 NM_027993 ENSMUSG00000028439 Fam219a 2310028H24Rik - 4|4 A5 family with sequence similarity 219, member A protein-coding 70177 Mm.453076 2210415C06Rik - - - RIKEN cDNA 2210415C06 gene protein-coding 93909 D16Jhu47 425P5.SP6 - - DNA segment, Chr 16, Johns Hopkins University 47 unknown 110193 Tcrb-D - - - T cell receptor beta, D region other 258837 Mm.377714 NM_146840 ENSMUSG00000044824 Olfr545 MOR42-1|S50 - 7|7 E3 olfactory receptor 545 protein-coding 16184 Mm.915 NM_008367 ENSMUSG00000026770 Il2ra CD25|Il2r|Ly-43 - 2 A1|2 8.91 cM interleukin 2 receptor, alpha chain protein-coding 100503481 Mm.272069 NM_001252013 4930453H23Rik - - X|X A2 RIKEN cDNA 4930453H23 gene protein-coding 226976 Mm.24734 NM_172652 ENSMUSG00000010453 Kansl3 4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310 - 1|1 B KAT8 regulatory NSL complex subunit 3 protein-coding 384524 Gm5320 EG384524 - 7|7 A1 3-phosphoglycerate dehydrogenase pseudogene pseudo 105244539 Gm40132 - - 3|3 predicted gene, 40132 ncRNA 56348 Mm.22505 NM_019657 ENSMUSG00000027195 Hsd17b12 2610510O05Rik|AI172963|KIK-I|Kik1 - 2|2 E1 hydroxysteroid (17-beta) dehydrogenase 12 protein-coding 105244401 Gm14444 - - 2|2 98.22 cM predicted gene 14444 protein-coding 100035381 Raml5 - - - radiation induced acute myeloid leukemia 5 unknown 76508 Mm.260203 NR_015577 ENSMUSG00000083844 Ube2d-ps 1600028I17Rik|2210015D19Rik|AI596465 - 11|11 A1 ubiquitin-conjugating enzyme E2D, pseudogene ncRNA 631071 Gm16589 EyeLinc10 - 8|8 A1.1 axin interaction partner and dorsalization antagonist pseudogene pseudo 54397 Mm.373627 NM_019441 ENSMUSG00000015474 Ppt2 0610007M19Rik|AA672937 - 17 B1|17 18.19 cM palmitoyl-protein thioesterase 2 protein-coding 12417 Mm.280968 NM_007624 ENSMUSG00000029836 Cbx3 HP1g|M32 - 6 B3|6 24.89 cM chromobox 3 protein-coding 102631865 XR_385737 Gm30091 - - 17 E1.3|17 predicted gene, 30091 ncRNA 75443 Mm.46161 NR_073044 ENSMUSG00000079476 1700011M02Rik - - X|X D RIKEN cDNA 1700011M02 gene ncRNA 105244477 XR_867391 Gm40078 - - 3 F1|3 predicted gene, 40078 ncRNA 110790 Igk-V10A - - - immunoglobulin kappa chain variable 10 (V10)A other 102640926 XR_377978 Gm36873 - - 6 E3|6 predicted gene, 36873 ncRNA 674251 Mm.330187 XR_374295 Adgrd2-ps EG666416|Gm13585|Gm999|Gpr144|Gpr144-ps - 2|2 B adhesion G protein-coupled receptor D2, pseudogene pseudo 209324 XM_156070 ENSMUSG00000079595 Gm4758 EG209324|Stfna3l1 - 16|16 B3 predicted gene 4758 protein-coding 432803 Gm5455 EG432803 - 13|13 D2.1 gem (nuclear organelle) associated protein 8 pseudogene pseudo 85064 D4Mit55 - - 4 24.28 cM DNA segment, Chr 4, Massachusetts Institute of Technology 55 unknown 24058 Mm.38017 NM_023059 ENSMUSG00000025494 Sigirr AI256711|TIR8 - 7|7 F5 single immunoglobulin and toll-interleukin 1 receptor (TIR) domain protein-coding 102633167 Mm.127060 XR_001780620 Gm31063 - - 12 C1|12 predicted gene, 31063 ncRNA 67427 Mm.21938 NM_026147 ENSMUSG00000028234 Rps20 4632426K06Rik|Dsk4 - 4|4 A1 ribosomal protein S20 protein-coding 67676 Mm.27131 NM_026308 ENSMUSG00000024446 Rpp21 0610037N01Rik - 17|17 B1 ribonuclease P 21 subunit protein-coding 61894 D1Mit440 - - 1 44.98 cM DNA Segment, Chr 1, Massachusetts Institute of Technology 440 unknown 67554 Mm.46067 NM_026232 ENSMUSG00000022003 Slc25a30 4933433D23Rik|AV025504|AV221431|AW319655|KMCP1 - 14|14 D3 solute carrier family 25, member 30 protein-coding 111708 Mpmv16 Mpmv-16 - - modified polytropic murine leukemia virus 16 other 215194 Mm.290690 NM_145416 ENSMUSG00000035047 Kri1 - - 9|9 A3 KRI1 homolog protein-coding 102639366 XR_380885 Gm35696 100043500|Gm4480 - 10 D2|10 predicted gene, 35696 ncRNA 360062 D17Jcs33 - - - DNA segment, Chr 17, John C. Schimenti 33 unknown 258735 Olfr1493-ps1 MOR266-3 - 19|19 A olfactory receptor 1493, pseudogene 1 pseudo 100417755 Gm18808 - - 17|17 B1 histocompatibility 2, M region locus 3 pseudogene pseudo 62447 D11Mit349 - - 11 33.29 cM DNA Segment, Chr 11 Massachusetts Institute of Technology 349 unknown 61160 D12Mit82 - - 12 7.03 cM DNA segment, Chr 12, Massachusetts Institute of Technology 82 unknown 53058 O21SP6 - - - DNA segment, O21SP6 unknown 74531 Mm.41984 9030405F24Rik - - 6|6 RIKEN cDNA 9030405F24 gene protein-coding 105246006 Gm41373 - - 15|15 predicted gene, 41373 ncRNA 545543 Gm5850 EG545543 - 3|3 F1 ribosomal protein L3 pseudogene pseudo 60744 D1Mit77 - - 1 38.01 cM DNA segment, Chr 1, Massachusetts Institute of Technology 77 unknown 102634985 XR_374359 Gm32434 - - 2 C1.1|2 predicted gene, 32434 ncRNA 100035332 Nilac10 - - 16 3.41 cM nicotine induced locomotor activity 10 unknown 269902 Mm.483785 NM_177764 ENSMUSG00000066537 Vmn2r57 D430014M15|EG269902 - 7|7 B3 vomeronasal 2, receptor 57 protein-coding 102454 Mm.29816 AI197427 - - - expressed sequence AI197427 unknown 381716 Mm.276086 NM_001200025 ENSMUSG00000079666 1700015F17Rik Gm1686 - 5|5 A1 RIKEN cDNA 1700015F17 gene protein-coding 108575 Iap5rc17 - - - intracisternal A-type particle, U5 region, SINE repeat c-17 other 102634524 XR_376259 Gm32085 - - 3 H3|3 predicted gene, 32085 ncRNA 227095 Mm.222063 NM_146108 ENSMUSG00000041426 Hibch 2610509I15Rik|HIBYL-COA-H - 1|1 C1.1 3-hydroxyisobutyryl-Coenzyme A hydrolase protein-coding 12848 Mm.3596 NM_009939 ENSMUSG00000027206 Cops2 AI315723|C85265|Csn2|Sgn2|TRIP-15|Trip15 - 2 F1|2 61.76 cM COP9 signalosome subunit 2 protein-coding 105246157 XR_876241 Gm41491 - - 16 C3.3|16 predicted gene, 41491 ncRNA 100036746 Mlca2 - - - modifier of locomotor activity 2 unknown 100417718 Gm18780 - - 7|7 F1 BCL2-associated transcription factor 1 pseudogene pseudo 668155 Gm9008 EG668155 - 6|6 C2 ring finger protein 26 pseudogene pseudo 100416164 Gm17950 - - 9|9 F1 WD repeat domain 85 pseudogene pseudo 108511970 Zfpm1r10 - - 8 E1 Zfpm1R10 erythroid cis-regulatory module biological-region 108290 Eif4ebp1-ps2 - - - eukaryotic translation initiation factor 4E binding protein 1, pseudogene 2 pseudo 18378 Mm.440368 NM_011010 ENSMUSG00000074006 Omp - - 7 E1|7 53.59 cM olfactory marker protein protein-coding 102635932 XR_377909 Gm33143 - - 6 D3|6 predicted gene, 33143 ncRNA 231147 Mm.290429 NM_194344 ENSMUSG00000036553 Sh3tc1 4631428G15|BC024909 - 5|5 B3 SH3 domain and tetratricopeptide repeats 1 protein-coding 692187 Mm.424583 Igkv2-137 Gm16955|IGKV - 6 30.89 cM|6 C1 immunoglobulin kappa chain variable 2-137 other 667126 Gm8472 EG667126 - 15|15 B1 ribosomal protein L35 pseudogene pseudo 270004 Mm.132547 NM_183193 ENSMUSG00000048377 Foxi2 B130055A05Rik - 7|7 F3 forkhead box I2 protein-coding 102639028 Gm28969 - - Y|Y predicted gene 28969 ncRNA 319806 Mm.467575 D630022N01Rik - - 3|3 RIKEN cDNA D630022N01 gene protein-coding 74369 Mm.289351 NM_028897 ENSMUSG00000068117 Mei1 4932408F18Rik|mei1 - 15 E1|15 38.41 cM meiotic double-stranded break formation protein 1 protein-coding 545725 Mm.99593 NM_172135 ENSMUSG00000040429 Mterf1a 4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b - 5|5 A1 mitochondrial transcription termination factor 1a protein-coding 100503120 Mm.387130 NR_077219 ENSMUSG00000084866 A930006K02Rik - - 16|16 C3.3 RIKEN cDNA A930006K02 gene ncRNA 219102 Gm4819 EG219102 - 14|14 C3 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 665108 Gm7495 EG665108 - 9|9 A1 predicted gene 7495 pseudo 110717 Top1-rs2 - - - topoisomerase (DNA) II, related sequence 2 protein-coding 16274 In(3)11Rk-d In(3)11Rk|In11Rk - - inversion, Chr 3, Roderick 11, distal other 17884 Mm.297382 NM_010855 ENSMUSG00000057003 Myh4 AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf - 11 B3|11 40.59 cM myosin, heavy polypeptide 4, skeletal muscle protein-coding 665598 Vmn2r-ps47 EG665598 - 7|7 A1 vomeronasal 2, receptor, pseudogene 47 pseudo 102634171 XR_390844 Gm31820 - - 4 D3|4 predicted gene, 31820 ncRNA 100040843 Mm.482683 NM_001100181 ENSMUSG00000063929 Cyp4a32 - - 4|4 D1 cytochrome P450, family 4, subfamily a, polypeptide 32 protein-coding 666535 Gm8152 EG666535 - 5|5 E5 predicted gene 8152 pseudo 624672 XM_017312467 Gm6518 EG624672 - 7|7 B1 predicted gene 6518 protein-coding 105704528 Mm.415128 NM_001308446 ENSMUSG00000078491 Gm13090 - - 4 E2|4 81.55 cM predicted gene 13090 protein-coding 21450 tclw73 tcl-w73 - - t-complex lethal w73 unknown 15394 Mm.197 NM_010449 ENSMUSG00000029844 Hoxa1 ERA1|Hox-1.6 - 6 B3|6 25.4 cM homeobox A1 protein-coding 66139 Mm.330087 NM_025376 ENSMUSG00000009214 Mymk 1110002H13Rik|AI131587|Tmem8c|myomaker - 2|2 A3 myomaker, myoblast fusion factor protein-coding 640324 Gm7291 - - 5|5 G2 predicted gene 7291 pseudo 105245276 XR_872006 Gm40753 - - 10 D1|10 predicted gene, 40753 ncRNA