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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| zipHomerResults.pl | 2014-03-27 20:00 | 429 | |
| tagDir2hicFile.pl | 2017-12-11 16:46 | 5.4K | |
| tagDir2bed.pl | 2014-03-27 20:00 | 1.8K | |
| tagDir2HiCsummary.pl | 2017-12-11 16:46 | 5.4K | |
| tag2pos.pl | 2014-03-27 20:00 | 1.7K | |
| tag2bed.pl | 2014-03-27 20:00 | 596 | |
| tab2fasta.pl | 2015-11-23 17:00 | 383 | |
| subtractBedGraphsDir..> | 2018-05-17 18:31 | 2.8K | |
| subtractBedGraphs.pl | 2018-05-24 13:26 | 3.5K | |
| seq2profile.pl | 2014-03-27 19:58 | 2.5K | |
| selectRepeatBg.pl | 2016-11-30 17:19 | 12K | |
| scrambleFasta.pl | 2014-03-27 19:58 | 1.5K | |
| scanMotifGenomeWide.pl | 2019-08-21 11:06 | 7.1K | |
| sam2spliceJunc.pl | 2016-05-27 03:31 | 1.5K | |
| runHiCpca.pl | 2019-08-21 11:06 | 20K | |
| rotateHiCmatrix.pl | 2018-05-09 15:59 | 3.8K | |
| revoppMotif.pl | 2014-03-27 19:57 | 691 | |
| resizePosFile.pl | 2014-03-27 19:57 | 2.0K | |
| renamePeaks.pl | 2014-03-27 19:56 | 593 | |
| removeRedundantPeaks.pl | 2014-03-27 19:56 | 3.1K | |
| removePoorSeq.pl | 2014-03-27 19:56 | 2.0K | |
| removeOutOfBoundsRea..> | 2019-08-21 11:06 | 4.9K | |
| removeBadSeq.pl | 2014-03-27 19:55 | 453 | |
| removeAccVersion.pl | 2016-01-27 19:01 | 1.0K | |
| randomizeMotifs.pl | 2014-03-27 19:54 | 1.5K | |
| randomizeGroupFile.pl | 2014-03-27 19:54 | 646 | |
| randRemoveBackground.pl | 2014-03-27 19:55 | 2.2K | |
| qseq2fastq.pl | 2014-03-27 19:54 | 1.6K | |
| profile2seq.pl | 2014-03-27 19:54 | 1.3K | |
| preparseGenome.pl | 2019-08-21 11:06 | 9.9K | |
| prepForR.pl | 2019-08-21 11:06 | 0 | |
| pos2bed.pl | 2015-11-20 11:55 | 2.8K | |
| parseGTF.pl | 2018-09-18 19:16 | 22K | |
| old/ | 2018-05-17 09:41 | - | |
| motif2Logo.pl | 2014-03-27 19:52 | 1.8K | |
| motif2Jaspar.pl | 2014-03-27 19:52 | 503 | |
| mergePeaks | 2019-08-21 11:06 | 2.5M | |
| mergeData.pl | 2014-03-27 19:51 | 4.7K | |
| merge2Dbed.pl | 2018-05-17 09:30 | 13K | |
| map-fastq.pl | 2018-07-09 00:05 | 14K | |
| makeUCSCfile | 2019-08-21 11:06 | 2.5M | |
| makeTagDirectory | 2019-08-21 11:06 | 2.5M | |
| makeMultiWigHub.pl | 2019-08-21 11:06 | 14K | |
| makeMetaGeneProfile.pl | 2019-08-21 11:06 | 5.8K | |
| makeHiCWashUfile.pl | 2014-03-27 19:50 | 5.6K | |
| makeBinaryFile.pl | 2014-03-27 19:50 | 622 | |
| makeBigWig.pl | 2019-08-21 11:06 | 9.0K | |
| makeBigBedMotifTrack.pl | 2014-03-27 19:49 | 2.1K | |
| loadPromoters.pl | 2019-08-21 11:06 | 11K | |
| loadGenome.pl | 2019-08-21 11:06 | 9.6K | |
| joinFiles.pl | 2014-03-27 19:48 | 449 | |
| homerTools | 2019-08-21 11:06 | 2.6M | |
| homer2 | 2019-08-21 11:06 | 823K | |
| homer | 2019-08-21 11:06 | 872K | |
| groupSequences.pl | 2014-03-27 19:48 | 1.2K | |
| go2cytoscape.pl | 2014-03-27 19:47 | 2.3K | |
| gff2pos.pl | 2014-03-27 19:47 | 512 | |
| getTopPeaks.pl | 2014-03-27 19:47 | 616 | |
| getSiteConservation.pl | 2014-03-27 19:47 | 1.3K | |
| getRandomReads.pl | 2014-03-27 19:46 | 1.9K | |
| getPos.pl | 2014-03-27 19:46 | 419 | |
| getPeakTags | 2019-08-21 11:06 | 2.5M | |
| getPartOfPromoter.pl | 2014-03-27 19:46 | 391 | |
| getMappingStats.pl | 2018-09-12 14:52 | 5.1K | |
| getMappableRegions | 2019-08-21 11:06 | 143K | |
| getLikelyAdapters.pl | 2017-06-14 14:58 | 2.1K | |
| getHomerQCstats.pl | 2018-04-30 13:14 | 8.5K | |
| getHiCcorrDiff.pl | 2019-08-21 11:06 | 5.4K | |
| getGenomeTilingPeaks | 2019-08-21 11:06 | 2.5M | |
| getGenesInCategory.pl | 2014-03-27 19:44 | 517 | |
| getGWASoverlap.pl | 2019-08-21 11:06 | 28K | |
| getFocalPeaks.pl | 2015-12-07 13:19 | 1.0K | |
| getDistalPeaks.pl | 2019-08-21 11:06 | 3.6K | |
| getDifferentialPeaks..> | 2019-08-21 11:06 | 7.2K | |
| getDifferentialPeaks | 2019-08-21 11:06 | 2.5M | |
| getDifferentialBedGr..> | 2014-03-27 19:40 | 2.1K | |
| getDiffExpression.pl | 2019-01-02 14:11 | 35K | |
| getConservedRegions.pl | 2019-08-21 11:06 | 9.5K | |
| getChrLengths.pl | 2014-03-27 19:40 | 700 | |
| genomeOntology | 2019-08-21 11:06 | 2.5M | |
| genericConvertIDs.pl | 2014-03-27 19:38 | 1.9K | |
| freq2group.pl | 2014-03-27 19:38 | 1.0K | |
| flipPC1toMatch.pl | 2018-05-04 19:58 | 1.6K | |
| findcsRNATSS.pl | 2019-08-21 11:06 | 34K | |
| findTopMotifs.pl | 2014-03-27 19:38 | 2.9K | |
| findTADsAndLoopsFrom..> | 2019-08-21 11:06 | 2.6M | |
| findTADsAndLoops.pl | 2019-08-21 11:06 | 20K | |
| findRedundantBLAT.pl | 2014-03-27 19:37 | 915 | |
| findPeaks | 2019-08-21 11:06 | 2.5M | |
| findMotifsGenome.pl | 2019-08-21 11:06 | 44K | |
| findMotifs.pl | 2019-08-21 11:06 | 43K | |
| findKnownMotifs.pl | 2019-08-21 11:06 | 15K | |
| findHiCInteractionsB..> | 2019-08-21 11:06 | 5.3K | |
| findHiCDomains.pl | 2019-08-21 11:06 | 17K | |
| findHiCCompartments.pl | 2017-06-19 20:22 | 5.8K | |
| findGOtxt.pl | 2019-08-21 11:06 | 2.7K | |
| findGO.pl | 2019-08-21 11:06 | 6.8K | |
| filterTADsAndLoops.pl | 2019-08-21 11:06 | 15K | |
| filterTADsAndCPs.pl | 2017-09-22 11:19 | 14K | |
| filterListBy.pl | 2016-02-10 19:44 | 834 | |
| fastq2fasta.pl | 2014-03-27 19:33 | 444 | |
| fasta2tab.pl | 2014-03-27 19:33 | 1.6K | |
| eland2tags.pl | 2014-03-27 19:32 | 9.3K | |
| duplicateCol.pl | 2014-03-27 19:32 | 416 | |
| convertOrganismID.pl | 2019-08-21 11:06 | 2.5K | |
| convertIDs.pl | 2019-08-21 11:06 | 2.2K | |
| convertCoordinates.pl | 2017-01-19 13:13 | 5.8K | |
| conservationPerLocus.pl | 2014-03-27 19:31 | 315 | |
| conservationAverage.pl | 2014-03-27 19:30 | 645 | |
| cons2fasta.pl | 2014-03-27 19:30 | 1.5K | |
| condenseBedGraph.pl | 2014-03-27 19:29 | 1.3K | |
| compareMotifs.pl | 2019-08-21 11:06 | 42K | |
| combineHubs.pl | 2016-05-27 03:30 | 929 | |
| combineGO.pl | 2019-02-11 18:05 | 3.2K | |
| cluster2bedgraph.pl | 2014-03-27 19:27 | 1.3K | |
| cluster2bed.pl | 2016-05-04 22:24 | 2.8K | |
| cleanUpSequences.pl | 2014-03-27 19:27 | 1.4K | |
| cleanUpPeakFile.pl | 2014-03-27 19:27 | 807 | |
| chopify.pl | 2014-03-27 19:25 | 854 | |
| chopUpPeakFile.pl | 2014-03-27 19:26 | 1.0K | |
| chopUpBackground.pl | 2014-03-27 19:26 | 1.0K | |
| checkTagBias.pl | 2019-08-21 11:06 | 8.4K | |
| checkPeakFile.pl | 2014-03-27 19:24 | 1.7K | |
| changeNewLine.pl | 2014-03-27 19:23 | 563 | |
| bridgeResult2Cytosca..> | 2016-05-27 03:29 | 1.4K | |
| blat2gtf.pl | 2016-05-27 03:29 | 1.4K | |
| bed2tag.pl | 2014-03-27 19:22 | 378 | |
| bed2pos.pl | 2015-02-19 14:52 | 3.4K | |
| bed2DtoUCSCbed.pl | 2018-05-17 19:32 | 4.6K | |
| batchParallel.pl | 2016-07-13 18:23 | 2.2K | |
| batchMakeTagDirector..> | 2016-06-05 02:51 | 1.3K | |
| batchMakeMultiWigHub.pl | 2016-12-20 11:15 | 1.8K | |
| batchMakeHiCMatrix.pl | 2018-05-23 21:00 | 4.5K | |
| batchFindMotifsGenom..> | 2016-05-24 14:46 | 2.7K | |
| batchFindMotifs.pl | 2016-05-25 03:01 | 1.3K | |
| batchAnnotatePeaksHi..> | 2014-03-27 19:20 | 1.2K | |
| assignTSStoGene.pl | 2019-08-21 11:06 | 8.2K | |
| assignGenomeAnnotation | 2019-08-21 11:06 | 2.5M | |
| assignGeneWeights.pl | 2014-03-27 19:19 | 2.5K | |
| annotateTranscripts.pl | 2019-08-21 11:06 | 16K | |
| annotateRelativePosi..> | 2019-03-14 15:45 | 6.6K | |
| annotatePeaks.pl | 2019-08-21 11:06 | 126K | |
| annotateInteractions.pl | 2019-08-21 11:06 | 54K | |
| analyzeRepeats.pl | 2019-08-21 11:06 | 45K | |
| analyzeRNA.pl | 2019-08-21 11:06 | 32K | |
| analyzeHiC | 2019-08-21 11:06 | 2.6M | |
| analyzeChIP-Seq.pl | 2019-08-21 11:06 | 16K | |
| adjustRedunGroupFile.pl | 2014-03-27 19:15 | 1.6K | |
| adjustPeakFile.pl | 2017-05-23 11:52 | 5.9K | |
| addOligos.pl | 2014-03-27 19:15 | 1.0K | |
| addInternalData.pl | 2014-03-27 19:14 | 1.2K | |
| addGeneAnnotation.pl | 2019-08-21 11:06 | 1.8K | |
| addDataHeader.pl | 2014-03-27 19:08 | 1.1K | |
| addData.pl | 2014-03-27 19:08 | 892 | |
| Statistics.pm | 2019-03-08 11:33 | 23K | |
| SIMA.pl | 2019-08-21 11:06 | 28K | |
| HomerSVGLogo.pm | 2017-07-14 16:20 | 3.6K | |
| HomerConfig.pm | 2019-08-21 11:06 | 11K | |
| GenomeOntology.pl | 2019-08-21 11:06 | 8.7K | |