{
    GENOME_FASTA_INPUT: "/share/data/umw_biocore/genome_data/zebrafish/GRCz11plus_ensembl/GRCz11plus_ensembl.fa",
    GENE_ANNOTATION_INPUT: "/share/data/umw_biocore/genome_data/cellrangeratac/zebrafish/GRCz11_v4.2.1/LL_V4.2.1.transcript.gtf",
    MOTIF_INPUT: "/share/data/umw_biocore/genome_data/cellrangeratac/zebrafish/GRCz11_v4.2.1/JASPAR2020_CORE_vertebrates_non-redundant_pfms_jaspar.txt",
    ORGANISM: "Danio rerio",
    NON_NUCLEAR_CONTIGS: ["chrM"],
    PRIMARY_CONTIGS: ["chr1","chr10","chr11","chr12","chr13","chr14","chr15","chr16","chr17","chr18","chr19","chr2","chr20","chr21","chr22","chr23","chr24","chr25","chr3","chr4","chr5","chr6","chr7","chr8","chr9"]
}