cellranger 3.0.2 is located under /share/pkg/cellranger/3.0.2
/share/pkg/cellranger/3.0.2/cellranger-cs/3.0.2/bin
cellranger mkgtf (3.0.2)
Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
-------------------------------------------------------------------------------

Writing new genes GTF file (may take 10 minutes for a 1GB input GTF file)...
Invalid number of columns in GTF line 1: track name=V4.2gtf

Please fix your GTF and start again.

------------------------------------------------------------
Sender: LSF System <lsfadmin@c39b01>
Subject: Job 64668: <module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.2.1 && cellranger mkgtf LL_V4.2.1.gtf LL_V4.2.1.validated.gtf> in cluster <umghpcc> Exited

Job <module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.2.1 && cellranger mkgtf LL_V4.2.1.gtf LL_V4.2.1.validated.gtf> was submitted from host <ghpcc06> by user <gxy11w> in cluster <umghpcc> at Fri Nov 15 13:13:12 2019.
Job was executed on host(s) <c39b01>, in queue <long>, as user <gxy11w> in cluster <umghpcc> at Fri Nov 15 13:14:11 2019.
</home/gxy11w> was used as the home directory.
</share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.2.1> was used as the working directory.
Started at Fri Nov 15 13:14:11 2019.
Terminated at Fri Nov 15 13:14:35 2019.
Results reported at Fri Nov 15 13:14:35 2019.

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.2.1 && cellranger mkgtf LL_V4.2.1.gtf LL_V4.2.1.validated.gtf
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Exited with exit code 1.

Resource usage summary:

    CPU time :                                   2.14 sec.
    Max Memory :                                 45 MB
    Average Memory :                             29.00 MB
    Total Requested Memory :                     20048.00 MB
    Delta Memory :                               20003.00 MB
    Max Swap :                                   -
    Max Processes :                              5
    Max Threads :                                6
    Run time :                                   24 sec.
    Turnaround time :                            83 sec.

The output (if any) is above this job summary.

cellranger 3.0.2 is located under /share/pkg/cellranger/3.0.2
/share/pkg/cellranger/3.0.2/cellranger-cs/3.0.2/bin
cellranger mkgtf (3.0.2)
Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
-------------------------------------------------------------------------------

Writing new genes GTF file (may take 10 minutes for a 1GB input GTF file)...
...done


------------------------------------------------------------
Sender: LSF System <lsfadmin@c40b04>
Subject: Job 64680: <module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.2.1 && cellranger mkgtf LL_V4.2.1.gtf LL_V4.2.1.validated.gtf> in cluster <umghpcc> Done

Job <module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.2.1 && cellranger mkgtf LL_V4.2.1.gtf LL_V4.2.1.validated.gtf> was submitted from host <ghpcc06> by user <gxy11w> in cluster <umghpcc> at Fri Nov 15 13:49:27 2019.
Job was executed on host(s) <c40b04>, in queue <long>, as user <gxy11w> in cluster <umghpcc> at Fri Nov 15 13:50:00 2019.
</home/gxy11w> was used as the home directory.
</share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.2.1> was used as the working directory.
Started at Fri Nov 15 13:50:00 2019.
Terminated at Fri Nov 15 13:50:51 2019.
Results reported at Fri Nov 15 13:50:51 2019.

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.2.1 && cellranger mkgtf LL_V4.2.1.gtf LL_V4.2.1.validated.gtf
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Successfully completed.

Resource usage summary:

    CPU time :                                   28.15 sec.
    Max Memory :                                 59 MB
    Average Memory :                             43.75 MB
    Total Requested Memory :                     20048.00 MB
    Delta Memory :                               19989.00 MB
    Max Swap :                                   -
    Max Processes :                              5
    Max Threads :                                14
    Run time :                                   51 sec.
    Turnaround time :                            84 sec.

The output (if any) is above this job summary.