chr1.trna1 (17052061-17052133) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (17052094-17052096) Score: 24.9 Filtered: HMM Sc=18.80 Sec struct Sc=6.10 * | * | * | * | * | * | * | Seq: GTTTCTGTAGTATAGTGGTtATCATGTTTGCCTCACATGTGAAAGAcCCTTGGCTCGAGACTGGAGGGAAACA Str: >>>>>>...>>............<<.>>>>>.......<<<<<......>>>>.......<<<<..<<<<<<. chr1.trna2 (17053780-17053850) Length: 71 bp Type: Gly Anticodon: CCC at 33-35 (17053812-17053814) Score: 56.3 Filtered: HMM Sc=54.00 Sec struct Sc=2.30 * | * | * | * | * | * | * | Seq: GCCTTGGTGGTGCAGTGGTAGAATTCTCGCCTCCCACGTGGGAGaCCCGGGTTCAATTCCCGGCCAATGCA Str: >>.>>>>..>>.>.......<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<.<<. chr1.trna3 (17186693-17186765) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (17186726-17186728) Score: 27.2 Filtered, Possible pseudogene: HMM Sc=26.90 Sec struct Sc=0.30 * | * | * | * | * | * | * | Seq: GTTTCTGTGGTGTAGTGGTtATTATGTTCGCTTCACATATGAAAGGtCTCTGGTTCGAGACTGCGTGGGAACA Str: >>>>>>>..>>>..........<<<.>>>>.........<<<<.....>.>>>.......<<<.<<<<<<<<. chr1.trna4 (17188416-17188486) Length: 71 bp Type: Gly Anticodon: CCC at 33-35 (17188448-17188450) Score: 78.3 HMM Sc=56.60 Sec struct Sc=21.70 * | * | * | * | * | * | * | Seq: GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTCCCACGCGGGAGaCCCGGGTTCAATTCCCGGCCAATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna5 (17199078-17199149) Length: 72 bp Type: Glu Anticodon: TTC at 34-36 (17199111-17199113) Score: 71.6 HMM Sc=44.70 Sec struct Sc=26.90 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGCtAGGATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGCCAGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna6 (17201958-17202031) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (17201992-17201994) Score: 52.0 Filtered: HMM Sc=42.90 Sec struct Sc=9.10 * | * | * | * | * | * | * | Seq: GTCTCTGTGGTGCAATCGGTtAGCGCGTTCGGCTGTTAACCATAAGGtTGGTGGTTAGAGACCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>..>>.......<<..<.....>>>>>.......<<<<<<<<<<<<. chr1.trna7 (17216172-17216245) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (17216206-17216208) Score: 77.7 HMM Sc=51.90 Sec struct Sc=25.80 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTCGGCTGTTAACCGAAAGAtTGGTGGTTCGAGCCCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna8 (39970192-39970267) Length: 76 bp Type: Lys Anticodon: CTT at 37-39 (39970228-39970230) Score: 48.3 Filtered, Possible pseudogene: HMM Sc=53.50 Sec struct Sc=-5.20 * | * | * | * | * | * | * | * Seq: GCCacCAGCaTGTCTCAGTCGGTATAGTGTGAGACTCTTAATCTCAGGGtCGTGGGTTCAAGCCCCACATTGGGCG Str: >>>..>>>.....>>..........<<..>>>>>.......<<<<<.....>>>>>.......<<<<<.<<<<<<. chr1.trna9 (94313129-94313213) Length: 85 bp Type: Arg Anticodon: TCT at 34-36 (94313162-94313164) Score: 71.1 Possible intron: 38-49 (94313166-94313177) HMM Sc=51.20 Sec struct Sc=19.90 * | * | * | * | * | * | * | * | Seq: GGCTCCGTGGCGCAATGGAtAGCGCATTGGACTTCTAgaggctgaaggcATTCAAAGGtTCCGGGTTCGAGTCCCGGCGGAGTCG Str: >>>>>>>..>>>>........<<<<.>>>>>...................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna10 (143690028-143690101) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (143690062-143690064) Score: 46.1 Filtered: HMM Sc=37.70 Sec struct Sc=8.40 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTTGACTGTTAACTGAAAGGtTGGTGGTGCAAGCCCATCCAGGGATG Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna11 (144301611-144301684) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (144301645-144301647) Score: 53.5 HMM Sc=38.90 Sec struct Sc=14.60 * | * | * | * | * | * | * | Seq: GTCTCTGTGGTGCAATCGGTtAGCGCGTTCCGCTGTTAACCGAAAGCtTGGTGGTTCGAGCCCACCCAGGGATG Str: >>>>>>>..>>>>.........<<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna12 (144481840-144481913) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (144481874-144481876) Score: 48.0 Filtered: HMM Sc=33.30 Sec struct Sc=14.70 * | * | * | * | * | * | * | Seq: GTCTCTGTGGTGCAATCGGTtAGCGCGTTCCGCTGTTAACCGAAAGCtTGGTGGTTTGAGCCCACCCAGGGATG Str: >>>>>>>..>>>>.........<<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna13 (145385729-145385804) Length: 76 bp Type: Asn Anticodon: GTT at 35-37 (145385763-145385765) Score: 41.0 Filtered: HMM Sc=17.40 Sec struct Sc=23.60 * | * | * | * | * | * | * | * Seq: GTCTCTGTGGCGCCATCGGTtAGTGCCTTCGGCTGTTTgaACCGAAAGGcTGGTGGTTCAAGCCCACCCAGAGATG Str: >>>>>>>..>>>>.........<<<<.>>>>>.........<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna14 (145941579-145941649) Length: 71 bp Type: Arg Anticodon: CCT at 33-35 (145941611-145941613) Score: 23.8 Filtered, Possible pseudogene: HMM Sc=29.60 Sec struct Sc=-5.80 * | * | * | * | * | * | * | Seq: GCATTGGTAGTTCAGCGGTGGCATTCTCCCCACCTACGCGGGAGaCCTGGGTTCAACTCCCGGCCAAAGCA Str: >>.>>>>..>>.>.......<.<<.>>>.>.......<.<<<....>>>>>.......<<<<<<<<<.<<. chr1.trna15 (145950996-145951066) Length: 71 bp Type: Gly Anticodon: CCC at 33-35 (145951028-145951030) Score: 27.6 Filtered, Possible pseudogene: HMM Sc=23.80 Sec struct Sc=3.80 * | * | * | * | * | * | * | Seq: GCGTTGGCAGTTCAGTGGTAGAATTCTCGCCTCCCACCCGGGAGaCCTGGATTCCATTTCCGGCAAATGCA Str: >>>>>.>..>>>>.......<<<<.>>>>.........<<<<....>>>>>.......<<<<<<.<<<<<. chr1.trna16 (145963304-145963375) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (145963337-145963339) Score: 71.9 HMM Sc=44.40 Sec struct Sc=27.50 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTgAGCACTCTGGACTCTGAATCCAGCGaTCCGAGTTCGAGTCTCGGTGGAACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna17 (146544773-146544844) Length: 72 bp Type: His Anticodon: GTG at 34-36 (146544806-146544808) Score: 60.1 HMM Sc=29.80 Sec struct Sc=30.30 * | * | * | * | * | * | * | Seq: GCCGTGATCGTATAGTGGTtAGTACTCTGCGTTGTGGCCGCAGCAaCCTCGGTTCGAATCCGAGTCACGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna18 (147483291-147483361) Length: 71 bp Type: Arg Anticodon: CCT at 33-35 (147483323-147483325) Score: 23.8 Filtered, Possible pseudogene: HMM Sc=29.60 Sec struct Sc=-5.80 * | * | * | * | * | * | * | Seq: GCATTGGTAGTTCAGCGGTGGCATTCTCCCCACCTACGCGGGAGaCCTGGGTTCAACTCCCGGCCAAAGCA Str: >>.>>>>..>>.>.......<.<<.>>>.>.......<.<<<....>>>>>.......<<<<<<<<<.<<. chr1.trna19 (147492714-147492784) Length: 71 bp Type: Gly Anticodon: CCC at 33-35 (147492746-147492748) Score: 27.6 Filtered, Possible pseudogene: HMM Sc=23.80 Sec struct Sc=3.80 * | * | * | * | * | * | * | Seq: GCGTTGGCAGTTCAGTGGTAGAATTCTCGCCTCCCACCCGGGAGaCCTGGATTCCATTTCCGGCAAATGCA Str: >>>>>.>..>>>>.......<<<<.>>>>.........<<<<....>>>>>.......<<<<<<.<<<<<. chr1.trna20 (147505038-147505109) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (147505071-147505073) Score: 71.9 HMM Sc=44.40 Sec struct Sc=27.50 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTgAGCACTCTGGACTCTGAATCCAGCGaTCCGAGTTCGAGTCTCGGTGGAACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna21 (147719029-147719102) Length: 74 bp Type: Asn Anticodon: ATT at 35-37 (147719063-147719065) Score: 47.8 Filtered: HMM Sc=40.80 Sec struct Sc=7.00 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTcAGAGCGTTCGGCTATTAACCGAACGGtGAGTAGTTCAAGACCACCCAGGGACG Str: >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<......>>.>.......<.<<.<<<<<<<. chr1.trna22 (147753471-147753542) Length: 72 bp Type: His Anticodon: GTG at 34-36 (147753504-147753506) Score: 60.1 HMM Sc=29.80 Sec struct Sc=30.30 * | * | * | * | * | * | * | Seq: GCCGTGATCGTATAGTGGTtAGTACTCTGCGTTGTGGCCGCAGCAaCCTCGGTTCGAATCCGAGTCACGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna23 (147800937-147801008) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (147800970-147800972) Score: 58.5 HMM Sc=36.20 Sec struct Sc=22.30 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTaAGCACTCTGGACTCTGAATCCAGCCATCTGAGTTCGAGTCTCTGTGGAACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>.>>>.......<<<.<<<<<<<<. chr1.trna24 (147825689-147825760) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (147825722-147825724) Score: 35.0 Filtered, Possible pseudogene: HMM Sc=34.30 Sec struct Sc=0.70 * | * | * | * | * | * | * | Seq: GGTTCCATGGGTTAATGGTgAGCACCCTGGACTCTGAATCAAGCGaTCCGAGTTCAAATCTCGGTGGTACCT Str: >>>.>>>..>..>........<..<.>>.>>.......<<.<<....>>>>>.......<<<<<<<<.<<<. chr1.trna25 (147877537-147877610) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (147877571-147877573) Score: 46.1 Filtered: HMM Sc=37.70 Sec struct Sc=8.40 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTTGACTGTTAACTGAAAGGtTGGTGGTGCAAGCCCATCCAGGGATG Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna26 (148000805-148000878) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (148000839-148000841) Score: 67.8 HMM Sc=49.10 Sec struct Sc=18.70 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGTAGTCGGTtAGCGCGTTCGGCTGTTAACCGAAAAGtTGGTGGTTCGAGCCCACCCAGGAACG Str: >>.>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<.<<. chr1.trna27 (148248115-148248188) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (148248149-148248151) Score: 80.9 HMM Sc=55.20 Sec struct Sc=25.70 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTCGGCTGTTAACCGAAAGGtTGGTGGTTCGAGCCCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna28 (149079364-149079435) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (149079397-149079399) Score: 35.7 Filtered, Possible pseudogene: HMM Sc=36.40 Sec struct Sc=-0.70 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTgAGGGCTTTGGACTCTGACTACAGTGaTCAGAGTTCAAGTCTCAGTGGGACCT Str: >>>>>>>..>>.>........<.<<.>>>.>.......<.<<<....>.>>>.......<<<.<<<<<<<<. chr1.trna29 (149186125-149186196) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (149186158-149186160) Score: 71.9 HMM Sc=44.40 Sec struct Sc=27.50 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTaAGCACTCTGGACTCTGAATCCAGCGaTCCGAGTTCGAGTCTCGGTGGAACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna30 (149608609-149608682) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (149608643-149608645) Score: 46.1 Filtered: HMM Sc=37.70 Sec struct Sc=8.40 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTTGACTGTTAACTGAAAGGtTGGTGGTGCAAGCCCATCCAGGGATG Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna31 (153643726-153643797) Length: 72 bp Type: iMet Anticodon: CAT at 33-35 (153643758-153643760) Score: 60.4 HMM Sc=30.80 Sec struct Sc=29.60 * | * | * | * | * | * | * | Seq: AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGtCGATGGATCGAAACCATCCTCTGCTA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna32 (161390661-161390733) Length: 73 bp Type: Sup Anticodon: TTA at 35-37 (161390695-161390697) Score: 36.3 Filtered, Possible pseudogene: HMM Sc=34.60 Sec struct Sc=1.70 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGCtAGGATTCTaGTGCTTTAACTGCcAGCGCCCAGGTTCAATTCCCGGTTAGGAAA Str: >.>>>>>..>>>>........<<<<.>>.>>>.......<<<.<<...>>.>>.......<<.<<<<<<<.<. chr1.trna33 (161411323-161411405) Length: 83 bp Type: Leu Anticodon: CAG at 35-37 (161411357-161411359) Score: 78.2 HMM Sc=47.50 Sec struct Sc=30.70 * | * | * | * | * | * | * | * | Seq: GTCAGGATGGCCGAGCGGTctAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAATCCCACTCCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr1.trna34 (161413094-161413164) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (161413126-161413128) Score: 80.9 HMM Sc=60.10 Sec struct Sc=20.80 * | * | * | * | * | * | * | Seq: GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCCATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna35 (161418741-161418823) Length: 83 bp Type: Leu Anticodon: CAG at 35-37 (161418775-161418777) Score: 78.2 HMM Sc=47.50 Sec struct Sc=30.70 * | * | * | * | * | * | * | * | Seq: GTCAGGATGGCCGAGCGGTctAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAATCCCACTCCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr1.trna36 (161420467-161420537) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (161420499-161420501) Score: 80.9 HMM Sc=60.10 Sec struct Sc=20.80 * | * | * | * | * | * | * | Seq: GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCCATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna37 (161426122-161426204) Length: 83 bp Type: Leu Anticodon: CAG at 35-37 (161426156-161426158) Score: 78.2 HMM Sc=47.50 Sec struct Sc=30.70 * | * | * | * | * | * | * | * | Seq: GTCAGGATGGCCGAGCGGTctAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAATCCCACTCCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr1.trna38 (161427898-161427968) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (161427930-161427932) Score: 80.9 HMM Sc=60.10 Sec struct Sc=20.80 * | * | * | * | * | * | * | Seq: GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCCATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna39 (161433532-161433614) Length: 83 bp Type: Leu Anticodon: CAG at 35-37 (161433566-161433568) Score: 78.2 HMM Sc=47.50 Sec struct Sc=30.70 * | * | * | * | * | * | * | * | Seq: GTCAGGATGGCCGAGCGGTctAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAATCCCACTCCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr1.trna40 (161435258-161435328) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (161435290-161435292) Score: 80.9 HMM Sc=60.10 Sec struct Sc=20.80 * | * | * | * | * | * | * | Seq: GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCCATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna41 (161440913-161440995) Length: 83 bp Type: Leu Anticodon: CAG at 35-37 (161440947-161440949) Score: 78.2 HMM Sc=47.50 Sec struct Sc=30.70 * | * | * | * | * | * | * | * | Seq: GTCAGGATGGCCGAGCGGTctAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAATCCCACTCCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr1.trna42 (161450356-161450426) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (161450388-161450390) Score: 69.4 HMM Sc=50.30 Sec struct Sc=19.10 * | * | * | * | * | * | * | Seq: GCATAGGTGGTTCAGTGGTAGAATTCTTGCCTGCCACGCAGGAGGCCCAGGTTTGATTCCTGGCCCATGCA Str: >>>>.>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<.<<<<. chr1.trna43 (161492935-161493006) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (161492968-161492970) Score: 23.5 Filtered: HMM Sc=14.70 Sec struct Sc=8.80 * | * | * | * | * | * | * | Seq: TCCTTGTTACTATAGTGGTgAGTATCTCTGCCTGTCATGCGTGAGaGAGGGGGTCGATTCCCCGACGGGGAG Str: >>>>>>>...>>>........<<<..>.>>>.......<<<.<.....>>>>.......<<<<.<<<<<<<. chr1.trna44 (161500903-161500974) Length: 72 bp Type: Gly Anticodon: TCC at 34-36 (161500936-161500938) Score: 73.8 HMM Sc=49.30 Sec struct Sc=24.50 * | * | * | * | * | * | * | Seq: GCGTTGGTGGTATAGTGGTgAGCATAGCTGCCTTCCAAGCAGTTGaCCCGGGTTCGATTCCCGGCCAACGCA Str: >>>>>>>..>>.>........<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna45 (161510031-161510104) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (161510065-161510067) Score: 81.5 HMM Sc=55.70 Sec struct Sc=25.80 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTCGGCTGTTAACCGAAAGGtTGGTGGTTCGATCCCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna46 (161574588-161574659) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (161574621-161574623) Score: 24.8 Filtered: HMM Sc=14.40 Sec struct Sc=10.40 * | * | * | * | * | * | * | Seq: TCCTTGTTACTATAGTGGTaAGTATCTCTGCCTGTCATGCATGAGaGAGGGGGTCGATTCCCTGACGGGGAG Str: >>>>>>>...>>>........<<<..>.>>>.......<<<.<.....>>>>.......<<<<.<<<<<<<. chr1.trna47 (161582508-161582579) Length: 72 bp Type: Glu Anticodon: TTC at 34-36 (161582541-161582543) Score: 54.6 Filtered: HMM Sc=46.60 Sec struct Sc=8.00 * | * | * | * | * | * | * | Seq: GCGTTGGTGGTGTAGTGGTgAGCACAGCTGCCTTTCAAGCAGTTAaCGCGGGTTCGATTCCCGGGTAACGAA Str: .>>>>>...>>>>........<<<<.>>>>>.......<<<<<.....>>>>.......<<<<..<<<<<.. chr1.trna48 (161591465-161591538) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (161591499-161591501) Score: 39.0 Filtered: HMM Sc=33.70 Sec struct Sc=5.30 * | * | * | * | * | * | * | Seq: GTTTCTGTAGCGCGATCGGTtAGCGCCTTCGGCTGTTAAACGAAAGGtTGGTGGTTCGTTCCCACCCCGGGACA Str: >>>>>.>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<.<<<<<. chr1.trna49 (165566150-165566222) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (165566183-165566185) Score: 46.9 Filtered, Possible pseudogene: HMM Sc=48.20 Sec struct Sc=-1.30 * | * | * | * | * | * | * | Seq: GTCTAGCTAGATCAGTTGGTAGAGCATAAGACTCTTAATCTCAGGGtCATGGGTTTGAGCCCTACGTTGGGCG Str: >>>>>>>..>.>>........<<.<.>.>>>.......<<<.<......>>>>.......<<<<.<<<<<<<. chr1.trna50 (167683962-167684033) Length: 72 bp Type: Pro Anticodon: CGG at 33-35 (167683994-167683996) Score: 70.2 HMM Sc=43.80 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna51 (204475655-204475727) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (204475688-204475690) Score: 87.8 HMM Sc=67.30 Sec struct Sc=20.50 * | * | * | * | * | * | * | Seq: GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGtCCAGGGTTCAAGTCCCTGTTCGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna52 (205443271-205443343) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (205443304-205443306) Score: 65.1 Filtered: HMM Sc=55.20 Sec struct Sc=9.90 * | * | * | * | * | * | * | Seq: GCCCGGAGAGCTCAGTGGGtAGAGCATCAGACTTTTAATCTGAGGGtCCAGGGTTCAAGTCCTCGTTCGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<. chr1.trna53 (222638347-222638419) Length: 73 bp Type: Thr Anticodon: TGT at 34-36 (222638380-222638382) Score: 84.1 HMM Sc=60.00 Sec struct Sc=24.10 * | * | * | * | * | * | * | Seq: GGCTCCATAGCTCAGTGGTtAGAGCACTGGTCTTGTAAACCAGGGGtCGCGAGTTCGATCCTCGCTGGGGCCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna56 (249168054-249168159) Length: 106 bp Type: Leu Anticodon: CAA at 35-37 (249168088-249168090) Score: 73.6 Possible intron: 39-60 (249168092-249168113) HMM Sc=52.30 Sec struct Sc=21.30 * | * | * | * | * | * | * | * | * | * | * Seq: GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGgtaagcaccttgcctgcgggctTTCTGGTCTCCGGATGGAGGCGTGGGTTCGAATCCCACTTCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>.............................<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. chr1.trna57 (249168447-249168518) Length: 72 bp Type: Glu Anticodon: CTC at 34-36 (249168480-249168482) Score: 68.7 HMM Sc=47.40 Sec struct Sc=21.30 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGTtAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGAAA Str: >.>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<.<. chr1.trna58 (207178230-207178154) Length: 77 bp Type: Pro Anticodon: TGG at 34-36 (207178197-207178195) Score: 22.6 Filtered, Possible pseudogene: HMM Sc=35.20 Sec struct Sc=-12.60 * | * | * | * | * | * | * | * Seq: GCCAGGAGAGCTCAGTGGTgATGGGATGAGATCTGGACTCACACCTCTAGgCCTGGGTTCAAATCCCAGGTCTAGCG Str: >>.>>>....>>..........<<..>>.>>.......<<.<<.........>>>>>.......<<<<<.<<<.<<. chr1.trna59 (204476230-204476158) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (204476197-204476195) Score: 87.8 HMM Sc=67.30 Sec struct Sc=20.50 * | * | * | * | * | * | * | Seq: GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGtCCAGGGTTCAAGTCCCTGTTCGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna60 (180184348-180184276) Length: 73 bp Type: Val Anticodon: AAC at 34-36 (180184315-180184313) Score: 39.9 Filtered: HMM Sc=26.30 Sec struct Sc=13.60 * | * | * | * | * | * | * | Seq: GTTTCCATAGTGTACTGGTtATCACATTCACCTAACACGCGAAAGGtCCTTGGTTTGAAACCAGGCAGAAACA Str: >>>>>....>>>..........<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<..<<<<<. chr1.trna61 (172157613-172157538) Length: 76 bp Type: Undet Anticodon: NNN at 0-0 (0-0) Score: 24.5 Filtered, Possible pseudogene: HMM Sc=24.10 Sec struct Sc=0.40 * | * | * | * | * | * | * | * Seq: TCTCcaccCTGTGGTCTAGTGGTtAGGAGTTGGTGCTTTCGTCATGACAGCCCAGGTTCAATTCCTGGTTAGAGAG Str: >>>>......>...>>>........<<<..>>..........<<.......>>>>>.......<<<<<<..<<<<. chr1.trna62 (167684796-167684725) Length: 72 bp Type: Pro Anticodon: AGG at 33-35 (167684764-167684762) Score: 70.2 HMM Sc=43.80 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna63 (161581819-161581736) Length: 84 bp Type: Leu Anticodon: CAA at 36-38 (161581784-161581782) Score: 57.5 HMM Sc=39.40 Sec struct Sc=18.10 * | * | * | * | * | * | * | * | Seq: GTCAGGATGGCCGAGCAGTcttAAGGCGCTGCGTTCAAATCGCACCCTCCGCTGGAGGCGTGGGTTCGAATCCCACTTTTGACA Str: >>>>>>>..>>>............<<<..>>>>.......<<<<..>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr1.trna64 (161575356-161575286) Length: 71 bp Type: Cys Anticodon: GCA at 33-35 (161575324-161575322) Score: 26.1 Filtered, Possible pseudogene: HMM Sc=24.70 Sec struct Sc=1.40 * | * | * | * | * | * | * | Seq: GCATTGGTGGTGTAGTGGTAGACTTCTCGCCCGCAACGCGGGAGGCCCGCGTCCGATTACCGGCCAATGCA Str: >>>>>>>..>..>.......<..<.>>>>>.......<<<<<....>>>...........<<<<<<<<<<. chr1.trna65 (161500214-161500132) Length: 83 bp Type: Leu Anticodon: CAG at 35-37 (161500180-161500178) Score: 78.2 HMM Sc=47.50 Sec struct Sc=30.70 * | * | * | * | * | * | * | * | Seq: GTCAGGATGGCCGAGCGGTctAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAATCCCACTCCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr1.trna66 (161493707-161493637) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (161493675-161493673) Score: 81.0 HMM Sc=59.90 Sec struct Sc=21.10 * | * | * | * | * | * | * | Seq: GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna67 (161440276-161440205) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (161440243-161440241) Score: 66.5 HMM Sc=35.70 Sec struct Sc=30.80 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTgAGTATCCCCGCCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna68 (161439618-161439547) Length: 72 bp Type: Gly Anticodon: TCC at 34-36 (161439585-161439583) Score: 73.8 HMM Sc=49.30 Sec struct Sc=24.50 * | * | * | * | * | * | * | Seq: GCGTTGGTGGTATAGTGGTgAGCATAGCTGCCTTCCAAGCAGTTGaCCCGGGTTCGATTCCCGGCCAACGCA Str: >>>>>>>..>>.>........<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna69 (161439260-161439189) Length: 72 bp Type: Glu Anticodon: CTC at 34-36 (161439227-161439225) Score: 73.2 HMM Sc=49.00 Sec struct Sc=24.20 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGTtAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna70 (161432895-161432824) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (161432862-161432860) Score: 66.5 HMM Sc=35.70 Sec struct Sc=30.80 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTgAGTATCCCCGCCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna71 (161432237-161432166) Length: 72 bp Type: Gly Anticodon: TCC at 34-36 (161432204-161432202) Score: 73.8 HMM Sc=49.30 Sec struct Sc=24.50 * | * | * | * | * | * | * | Seq: GCGTTGGTGGTATAGTGGTgAGCATAGCTGCCTTCCAAGCAGTTGaCCCGGGTTCGATTCCCGGCCAACGCA Str: >>>>>>>..>>.>........<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna72 (161431880-161431809) Length: 72 bp Type: Glu Anticodon: CTC at 34-36 (161431847-161431845) Score: 73.2 HMM Sc=49.00 Sec struct Sc=24.20 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGTtAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna73 (161425485-161425414) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (161425452-161425450) Score: 66.5 HMM Sc=35.70 Sec struct Sc=30.80 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTgAGTATCCCCGCCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna74 (161424827-161424756) Length: 72 bp Type: Gly Anticodon: TCC at 34-36 (161424794-161424792) Score: 73.8 HMM Sc=49.30 Sec struct Sc=24.50 * | * | * | * | * | * | * | Seq: GCGTTGGTGGTATAGTGGTgAGCATAGCTGCCTTCCAAGCAGTTGaCCCGGGTTCGATTCCCGGCCAACGCA Str: >>>>>>>..>>.>........<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna75 (161424469-161424398) Length: 72 bp Type: Glu Anticodon: CTC at 34-36 (161424436-161424434) Score: 73.2 HMM Sc=49.00 Sec struct Sc=24.20 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGTtAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna76 (161418104-161418033) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (161418071-161418069) Score: 66.5 HMM Sc=35.70 Sec struct Sc=30.80 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTgAGTATCCCCGCCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna77 (161417446-161417375) Length: 72 bp Type: Gly Anticodon: TCC at 34-36 (161417413-161417411) Score: 73.8 HMM Sc=49.30 Sec struct Sc=24.50 * | * | * | * | * | * | * | Seq: GCGTTGGTGGTATAGTGGTgAGCATAGCTGCCTTCCAAGCAGTTGaCCCGGGTTCGATTCCCGGCCAACGCA Str: >>>>>>>..>>.>........<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna78 (161417089-161417018) Length: 72 bp Type: Glu Anticodon: CTC at 34-36 (161417056-161417054) Score: 73.2 HMM Sc=49.00 Sec struct Sc=24.20 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGTtAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna79 (161410686-161410615) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (161410653-161410651) Score: 66.5 HMM Sc=35.70 Sec struct Sc=30.80 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTgAGTATCCCCGCCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna80 (161410032-161409961) Length: 72 bp Type: Gly Anticodon: TCC at 34-36 (161409999-161409997) Score: 56.0 HMM Sc=41.50 Sec struct Sc=14.50 * | * | * | * | * | * | * | Seq: GCGTTGGTGGTATAGTGGTgAGCATAGTTGCCTTCCAAGCAGTTGaCCCGGGCTCGATTCCCGCCCAACGCA Str: >>>>>>>..>>.>........<.<<.>>>>>.......<<<<<.....>>>>.......<<<<.<<<<<<<. chr1.trna81 (161397940-161397867) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (161397906-161397904) Score: 80.9 HMM Sc=55.20 Sec struct Sc=25.70 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTCGGCTGTTAACCGAAAGGtTGGTGGTTCGAGCCCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna82 (161391954-161391883) Length: 72 bp Type: Glu Anticodon: TTC at 34-36 (161391921-161391919) Score: 68.7 HMM Sc=44.50 Sec struct Sc=24.20 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGCtAGGATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna83 (161369562-161369490) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (161369529-161369527) Score: 79.4 HMM Sc=49.30 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTCACACGCGAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna84 (159111474-159111401) Length: 74 bp Type: Arg Anticodon: TCT at 35-37 (159111440-159111438) Score: 78.5 HMM Sc=56.90 Sec struct Sc=21.60 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATGGAcgAGCGCGCTGGACTTCTAATCCAGAGGtTCCGGGTTCGAGTCCCGGCAGAGATG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna85 (150017452-150017382) Length: 71 bp Type: Ala Anticodon: AGC at 33-35 (150017420-150017418) Score: 47.4 Filtered: HMM Sc=39.40 Sec struct Sc=8.00 * | * | * | * | * | * | * | Seq: GGGGGTGTAGATCAGTGGTAGGGCGCACGCTTAGCATGCATGAGGcCCTGGGTCAATCcCCAGCACCTCCA Str: >>>>>>>..>.>>.......<<.<.>>.>>.......<<.<<.....>>>>........<<<<<<<<<<<. chr1.trna86 (149711871-149711798) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (149711837-149711835) Score: 69.8 HMM Sc=48.30 Sec struct Sc=21.50 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGCtAGCGCGTTTGGCTGTTAACTAAAAGGtTGGTGGTTCGAACCCACCCAGAGGCG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna87 (149684161-149684088) Length: 74 bp Type: Val Anticodon: CAC at 34-36 (149684128-149684126) Score: 71.0 HMM Sc=43.80 Sec struct Sc=27.20 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTCACACGCGtAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<.<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna88 (149680280-149680210) Length: 71 bp Type: Gly Anticodon: CCC at 33-35 (149680248-149680246) Score: 51.6 Filtered, Possible pseudogene: HMM Sc=48.20 Sec struct Sc=3.40 * | * | * | * | * | * | * | Seq: GCACTGGTGGTTCAGTGGTAGAATTCTCGCCTCCCACGCGGGAGaCCCGGGTTTAATTCCCGGTCAAGATA Str: >...>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<...<. chr1.trna89 (149672984-149672905) Length: 80 bp Type: Phe Anticodon: GAA at 42-44 (149672943-149672941) Score: 26.6 Filtered, Possible pseudogene: HMM Sc=28.70 Sec struct Sc=-2.10 * | * | * | * | * | * | * | * Seq: TCCgCatctgcaTGGTTGTCTAGTGGCtAGGATTCGGTGCTGAAAGCGTCACGGCCCGGGTTCGATTCCCGGTCAGGGAA Str: >>>.>.......>>>..>>>>........<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna90 (149670130-149670057) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (149670096-149670094) Score: 37.7 Filtered: HMM Sc=30.60 Sec struct Sc=7.10 * | * | * | * | * | * | * | Seq: ATCTCCGTGGAGCAATTGGTtAGCGCGTTCGGCCGTTAACCGGAAAGtTGGTGGTTCGAGCCTACCCAGGGACG Str: .>>>>.>..>.>>.........<<.<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<.. chr1.trna91 (149664427-149664355) Length: 73 bp Type: Glu Anticodon: TTC at 34-36 (149664394-149664392) Score: 35.9 Filtered: HMM Sc=28.40 Sec struct Sc=7.50 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGCtAGGATTCGGCGCTTTCACCGCCTGCAGCTCGAGTTCGATTCCTGGTCAGGGAA Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>.>.......<.<<<<<<<<<<. chr1.trna92 (149615690-149615617) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (149615656-149615654) Score: 53.5 HMM Sc=38.90 Sec struct Sc=14.60 * | * | * | * | * | * | * | Seq: GTCTCTGTGGTGCAATCGGTtAGCGCGTTCCGCTGTTAACCGAAAGCtTGGTGGTTCGAGCCCACCCAGGGATG Str: >>>>>>>..>>>>.........<<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna93 (149343151-149343081) Length: 71 bp Type: Ala Anticodon: TGC at 35-37 (149343117-149343115) Score: 22.4 Filtered, Possible pseudogene: HMM Sc=24.90 Sec struct Sc=-2.50 * | * | * | * | * | * | * | Seq: GGATTGGTGGTCCAGTGGTAGAATTCTcaCCGCCTGCATAGGAGaCCCTGGTTTAATTCCTGGCCAATGCA Str: >.>>>>>..>>.>.......<.<<.....>>.........<<....>>.>>.......<<.<<<<<<<.<. chr1.trna94 (149326345-149326272) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (149326311-149326309) Score: 54.5 HMM Sc=35.10 Sec struct Sc=19.40 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGCtAGCGCGTTTGGCTGTTAACTAAAAAGtTGGTGGTTCGAACACACCCAGAGGCG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>.........<<<<<<<<<<<. chr1.trna95 (149298627-149298555) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (149298594-149298592) Score: 72.2 HMM Sc=46.10 Sec struct Sc=26.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTCACACGCGAAAGGtCCCCGGTTCGAAACTGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna96 (149294736-149294666) Length: 71 bp Type: Val Anticodon: CAC at 33-35 (149294704-149294702) Score: 60.1 Filtered: HMM Sc=53.90 Sec struct Sc=6.20 * | * | * | * | * | * | * | Seq: GCACTGGTGGTTCAGTGGTAGAATTCTCGCCTCACACGCGGGACACCCGGGTTCAATTCCCGGTCAAGGCA Str: >>..>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<..<<. chr1.trna97 (149287438-149287359) Length: 80 bp Type: Undet Anticodon: NNN at 0-0 (0-0) Score: 24.3 Filtered, Possible pseudogene: HMM Sc=28.00 Sec struct Sc=-3.70 * | * | * | * | * | * | * | * Seq: TCCgCatctgcaTGGTTGTCTAGTGGCtAGGATTCGGTGCTGAAAgagccACGGCCCGGGTTCGATTCCCGGTCAGGGAA Str: >>>.>.......>>>..>>>>........<<<<......................>>>>>.......<<<<<<<<<<<<. chr1.trna98 (149284576-149284503) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (149284542-149284540) Score: 42.4 Filtered: HMM Sc=35.20 Sec struct Sc=7.20 * | * | * | * | * | * | * | Seq: ATCTCCGTGGAGCAATTGGTtAGCGCGTTCGGCTGTTAACCGGAAAGtTGGTGGTTCGAGCCTACCCAGGGACG Str: .>>>>.>..>.>>.........<<.<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<.. chr1.trna99 (149278857-149278785) Length: 73 bp Type: Glu Anticodon: TTC at 34-36 (149278824-149278822) Score: 28.2 Filtered, Possible pseudogene: HMM Sc=28.30 Sec struct Sc=-0.10 * | * | * | * | * | * | * | Seq: TCCGTGGTGGTCTAGTGGCtAGGATTCGGCGCTTTCACCGCCTGCAGCTCGAGTTCGATTCCTGGTCAGGGAA Str: >>>.>>>..>>>>........<<<<..>>>>.......<<<<......>>>.>.......<.<<<<<<.<<<. chr1.trna100 (149230643-149230570) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (149230609-149230607) Score: 73.8 HMM Sc=51.20 Sec struct Sc=22.60 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATGGGTtAGCGCGTTCGGCTGTTAACCGAAAGGtTGGTGGTTCGAGCCCATCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna101 (149212021-149211948) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (149211987-149211985) Score: 37.2 Filtered, Possible pseudogene: HMM Sc=37.80 Sec struct Sc=-0.60 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCACAATCGGTtAGAGCGTTCGGCTGTTAATCTAAAGGtTGGTGGCTAGAACCCACTGAGGGACG Str: >>>>>>...>>.>.........<.<<.>>.>>.......<<.<<.....>>>>>.......<<<<<.<<<<<<. chr1.trna102 (149161699-149161628) Length: 72 bp Type: Glu Anticodon: TTC at 34-36 (149161666-149161664) Score: 31.5 Filtered, Possible pseudogene: HMM Sc=33.40 Sec struct Sc=-1.90 * | * | * | * | * | * | * | Seq: TGTCTGGTGGTCAAGTGGCtAGGATTTGGCGCTTTCACTGCCGCGGCCCGCGTTCGATTCCCGGTCAGGGAA Str: >.>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>.>.......<.<<<<<<<<.<. chr1.trna103 (149155899-149155828) Length: 72 bp Type: His Anticodon: GTG at 34-36 (149155866-149155864) Score: 58.2 HMM Sc=30.50 Sec struct Sc=27.70 * | * | * | * | * | * | * | Seq: GCCATGATCGTATAGTGGTtAGTACTCTGCGCTGTGGCCGCAGCAaCCTCGGTTCGAATCCGAGTCACGGCA Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<.<<<. chr1.trna104 (148760429-148760356) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (148760395-148760393) Score: 79.7 HMM Sc=53.90 Sec struct Sc=25.80 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCATTCGGCTGTTAACCGAAAGGtTGGTGGTTCGAGCCCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna105 (148598387-148598314) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (148598353-148598351) Score: 79.7 HMM Sc=53.90 Sec struct Sc=25.80 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCATTCGGCTGTTAACCGAAAGGtTGGTGGTTCGAGCCCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna106 (147851133-147851060) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (147851099-147851097) Score: 30.4 Filtered, Possible pseudogene: HMM Sc=31.40 Sec struct Sc=-1.00 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCACAATCGGTtAGCTTGTTCGGCTGTTAATCTAGAGGtTGGTGGTTAGAGCCCACTGAGGGATG Str: >>>>>>...>..>.........<..<.>>.>>.......<<.<<.....>>>>>.......<<<<<.<<<<<<. chr1.trna107 (147789554-147789485) Length: 70 bp Type: Asn Anticodon: GTT at 31-33 (147789524-147789522) Score: 20.4 Filtered: HMM Sc=10.70 Sec struct Sc=9.70 * | * | * | * | * | * | * Seq: GTCTCTGTTGCGCAATCAGCGCGTTTGGCTGTTAACAGAAAGGcTGGTGGTCCGAGCCCAACCAGGGACT Str: >>>>>>>..>>>>.....<<<<.>>>.>.......<.<<<.....>.>>>.......<<<.<<<<<<<<. chr1.trna108 (147781101-147781030) Length: 72 bp Type: Glu Anticodon: TTC at 34-36 (147781068-147781066) Score: 36.6 Filtered, Possible pseudogene: HMM Sc=33.90 Sec struct Sc=2.70 * | * | * | * | * | * | * | Seq: TCCTTGGTGGTCTAGTGGCtAGGATTCGGTGCTTTCACCTGTGCGGCCCGGGTTCAATTCCCGATGAAGGAA Str: >>>>>.>..>>>>........<<<<.>>..>.......<..<<.....>>>>.......<<<<.<.<<<<<. chr1.trna109 (147774916-147774845) Length: 72 bp Type: His Anticodon: GTG at 34-36 (147774883-147774881) Score: 60.1 HMM Sc=29.80 Sec struct Sc=30.30 * | * | * | * | * | * | * | Seq: GCCGTGATCGTATAGTGGTtAGTACTCTGCGTTGTGGCCGCAGCAaCCTCGGTTCGAATCCGAGTCACGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna110 (147737453-147737382) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (147737420-147737418) Score: 71.9 HMM Sc=44.40 Sec struct Sc=27.50 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTaAGCACTCTGGACTCTGAATCCAGCGaTCCGAGTTCGAGTCTCGGTGGAACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna111 (147716809-147716738) Length: 72 bp Type: Gly Anticodon: CCC at 34-36 (147716776-147716774) Score: 28.2 Filtered, Possible pseudogene: HMM Sc=27.10 Sec struct Sc=1.10 * | * | * | * | * | * | * | Seq: GCGTCAGTGGtTTTAGTGGTGGAATTCCTGCCTCCCATGCACGAGaTCCGTGTTCAACTCCTGGTTGGTGCA Str: >>>>>>>..>.>>>.......<<<<.>.>>>.......<<<.<....>>>.>.......<.<<<<<<<<<<. chr1.trna112 (147520840-147520767) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (147520806-147520804) Score: 68.6 HMM Sc=49.80 Sec struct Sc=18.80 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTCGGCTGTTAACTGAAAGGtTAGTGGTTCGAGCCCACCCGGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<<<<<. chr1.trna113 (146476831-146476760) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (146476798-146476796) Score: 37.3 Filtered: HMM Sc=28.50 Sec struct Sc=8.80 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTgACCACTTTGGACTCTGAATACAGTGaTCAGAGTTCAAGTCTCACTGGAACCT Str: >>>>>>>..>>>..........<<<.>>>.>.......<.<<<......>>>.......<<<..<<<<<<<. chr1.trna114 (145979107-145979034) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (145979073-145979071) Score: 68.6 HMM Sc=49.80 Sec struct Sc=18.80 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTCGGCTGTTAACTGAAAGGtTAGTGGTTCGAGCCCACCCGGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<<<<<. chr1.trna115 (145399304-145399233) Length: 72 bp Type: Glu Anticodon: CTC at 34-36 (145399271-145399269) Score: 73.2 HMM Sc=49.00 Sec struct Sc=24.20 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGTtAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna116 (145397935-145397864) Length: 72 bp Type: Gly Anticodon: TCC at 34-36 (145397902-145397900) Score: 73.8 HMM Sc=49.30 Sec struct Sc=24.50 * | * | * | * | * | * | * | Seq: GCGTTGGTGGTATAGTGGTgAGCATAGCTGCCTTCCAAGCAGTTGaCCCGGGTTCGATTCCCGGCCAACGCA Str: >>>>>>>..>>.>........<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna117 (145396952-145396881) Length: 72 bp Type: His Anticodon: GTG at 34-36 (145396919-145396917) Score: 60.1 HMM Sc=29.80 Sec struct Sc=30.30 * | * | * | * | * | * | * | Seq: GCCGTGATCGTATAGTGGTtAGTACTCTGCGTTGTGGCCGCAGCAaCCTCGGTTCGAATCCGAGTCACGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna118 (145395594-145395522) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (145395561-145395559) Score: 87.8 HMM Sc=68.80 Sec struct Sc=19.00 * | * | * | * | * | * | * | Seq: GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGtCGTGGGTTCGAGCCCCACGTTGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna119 (145379391-145379320) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (145379358-145379356) Score: 44.7 Filtered: HMM Sc=36.50 Sec struct Sc=8.20 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTgAGCACTTTGGACTCTGAATACAGTGaTCAGAGTTCAAGTCTCACTGGGACCT Str: >>>>>>>..>>>>........<<<<.>>>.>.......<.<<<......>>>.......<<<..<<<<<<<. chr1.trna120 (144839507-144839436) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (144839474-144839472) Score: 44.7 Filtered: HMM Sc=36.50 Sec struct Sc=8.20 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTgAGCACTTTGGACTCTGAATACAGTGaTCAGAGTTCAAGTCTCACTGGGACCT Str: >>>>>>>..>>>>........<<<<.>>>.>.......<.<<<......>>>.......<<<..<<<<<<<. chr1.trna121 (144488916-144488843) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (144488882-144488880) Score: 46.1 Filtered: HMM Sc=37.70 Sec struct Sc=8.40 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTTGACTGTTAACTGAAAGGtTGGTGGTGCAAGCCCATCCAGGGATG Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna122 (144308687-144308614) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (144308653-144308651) Score: 46.1 Filtered: HMM Sc=37.70 Sec struct Sc=8.40 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTTGACTGTTAACTGAAAGGtTGGTGGTGCAAGCCCATCCAGGGATG Str: >>>>>>>..>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna123 (143879905-143879832) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (143879871-143879869) Score: 62.7 HMM Sc=47.40 Sec struct Sc=15.30 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGCtAGCGCGTTTGGCTGTTAACTAAAAGGtTGGCGGTTCGAACCCACCCAGAGGCG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<. chr1.trna124 (143663631-143663558) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (143663597-143663595) Score: 42.4 Filtered, Possible pseudogene: HMM Sc=41.20 Sec struct Sc=1.20 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCACAATCGGTtAGCGCGTTCGGCTGTTAATCTAGAGGtTGGTGGTTAGAGCCCACTGAGGGATG Str: >>>>>>...>>.>.........<.<<.>>.>>.......<<.<<.....>>>>>.......<<<<<.<<<<<<. chr1.trna125 (93981906-93981834) Length: 73 bp Type: Cys Anticodon: GCA at 34-36 (93981873-93981871) Score: 77.8 HMM Sc=57.60 Sec struct Sc=20.20 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTCAAATCCGGGTGCCCCCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna126 (55423614-55423542) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (55423581-55423579) Score: 64.8 HMM Sc=54.80 Sec struct Sc=10.00 * | * | * | * | * | * | * | Seq: GCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGtCATGGGTTTGAGCCCCACGTTTGGTG Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<.<<<. chr1.trna127 (17006573-17006501) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (17006540-17006538) Score: 37.6 Filtered: HMM Sc=23.00 Sec struct Sc=14.60 * | * | * | * | * | * | * | Seq: GTTTCTGTGGTGTAGTGGTtATCATGTTCGCCTCACACGAGAAAAGtCCCTGATTCGAGACTGGGTGGGAACG Str: >>>>>>>..>>>..........<<<.>>>.>.......<.<<<.....>>>>.........<<<<<<<<<<<. chr1.trna128 (17004836-17004766) Length: 71 bp Type: Gly Anticodon: CCC at 33-35 (17004804-17004802) Score: 65.7 Filtered: HMM Sc=56.10 Sec struct Sc=9.60 * | * | * | * | * | * | * | Seq: GCGTTGGTGGTTTAGTGGTAGAATTCTCGCCTCCCATGCGGGAGaCCCGGGTTCAATTCCCGGCCACTGCA Str: >>>.>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<.<<<. chr1.trna129 (16874232-16874160) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (16874199-16874197) Score: 27.2 Filtered, Possible pseudogene: HMM Sc=26.90 Sec struct Sc=0.30 * | * | * | * | * | * | * | Seq: GTTTCTGTGGTGTAGTGGTtATTATGTTCGCTTCACATATGAAAGGtCTCTGGTTCGAGACTGCGTGGGAACA Str: >>>>>>>..>>>..........<<<.>>>>.........<<<<.....>.>>>.......<<<.<<<<<<<<. chr1.trna130 (16872504-16872434) Length: 71 bp Type: Gly Anticodon: CCC at 33-35 (16872472-16872470) Score: 78.3 HMM Sc=56.60 Sec struct Sc=21.70 * | * | * | * | * | * | * | Seq: GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTCCCACGCGGGAGaCCCGGGTTCAATTCCCGGCCAATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna131 (16861845-16861774) Length: 72 bp Type: Glu Anticodon: TTC at 34-36 (16861812-16861810) Score: 68.7 HMM Sc=44.50 Sec struct Sc=24.20 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGCtAGGATTCGGCGCTTTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr1.trna132 (16858966-16858893) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (16858932-16858930) Score: 44.1 Filtered: HMM Sc=35.00 Sec struct Sc=9.10 * | * | * | * | * | * | * | Seq: GTCTCTGTGGTGCAATCGGTtAGCGCGTTCGGCTGTTAACCATAAGGtTGGTGGTTACAGACCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>..>>.......<<..<.....>>>>>.......<<<<<<<<<<<<. chr1.trna133 (16847153-16847080) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (16847119-16847117) Score: 76.5 HMM Sc=51.10 Sec struct Sc=25.40 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTCGGCTGTTAACTGAAAGGtTGGTGGTTCGAGCCCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr1.trna134 (7990408-7990339) Length: 70 bp Type: Undet Anticodon: NNN at 0-0 (0-0) Score: 43.0 Filtered, Possible pseudogene: HMM Sc=38.40 Sec struct Sc=4.60 * | * | * | * | * | * | * Seq: TCCCTGGTAGTCTAGTGGTtAGGATTCCGCGCTCGCCATCACGaCCCGGGTTCGATTCCTGGTCAGGGAA Str: >>>>>>>..>>>>........<<<<.........>..><..<...>>>>>.......<<<<<<<<<<<<. chr1_gl000192_random.trna1 (468370-468443) Length: 74 bp Type: Asn Anticodon: ATT at 35-37 (468404-468406) Score: 47.8 Filtered: HMM Sc=40.80 Sec struct Sc=7.00 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTcAGAGCGTTCGGCTATTAACCGAACGGtGAGTAGTTCAAGACCACCCAGGGACG Str: >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<......>>.>.......<.<<.<<<<<<<. chr1_gl000192_random.trna2 (466149-466079) Length: 71 bp Type: Gly Anticodon: CCC at 33-35 (466117-466115) Score: 35.0 Filtered, Possible pseudogene: HMM Sc=33.80 Sec struct Sc=1.20 * | * | * | * | * | * | * | Seq: GCGTCAGTGGTTTAGTGGTGGAATTCCTGCCTCCCATGCACGAGaTCCGTGTTCAACTCCTGGTTGGTGCA Str: >>>>>>>..>>>>.......<<<<.>.>>>.......<<<.<....>>>.>.......<.<<<<<<<<<<. chr2.trna1 (11691833-11691893) Length: 61 bp Type: Gly Anticodon: CCC at 28-30 (11691860-11691862) Score: 36.5 Filtered: HMM Sc=15.40 Sec struct Sc=21.10 * | * | * | * | * | * | Seq: GTGGTCTAGTGGTtAGGATTCAGCGCTCCCACCGCCGCAgCCCGGGTTCGATTCCCGGtCA Str: >..>>>>........<<<<.>.>>>.......<<<.<....>>>>>.......<<<<<.<. chr2.trna2 (27273650-27273738) Length: 89 bp Type: Tyr Anticodon: GTA at 34-36 (27273683-27273685) Score: 77.9 Possible intron: 38-53 (27273687-27273702) HMM Sc=50.10 Sec struct Sc=27.80 * | * | * | * | * | * | * | * | * Seq: CCTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGtggatagggcgtggcaATCCTTAGGtCGCTGGTTCGATTCCGGCTCGAAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr2.trna3 (27274082-27274154) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (27274115-27274117) Score: 59.7 HMM Sc=36.10 Sec struct Sc=23.60 * | * | * | * | * | * | * | Seq: GGGGGATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtAGCGGGATCGATGCCCGCATCCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr2.trna4 (30277568-30277640) Length: 73 bp Type: Leu Anticodon: AAG at 34-36 (30277601-30277603) Score: 37.7 Filtered: HMM Sc=23.60 Sec struct Sc=14.10 * | * | * | * | * | * | * | Seq: GGGCCAGTGGCTCAATGGAtAATGCGTCTGACTAAGAATCAGAAGAtTCCAGCCTTGACTCCTGGCTGGCTCA Str: >>>>>>>..>>............<<.>>>>>.......<<<<<.....>>>>.........<<<<<<<<<<<. chr2.trna5 (43037676-43037768) Length: 93 bp Type: Ile Anticodon: TAT at 35-37 (43037710-43037712) Score: 73.2 Possible intron: 39-57 (43037714-43037732) HMM Sc=45.00 Sec struct Sc=28.20 * | * | * | * | * | * | * | * | * | Seq: GCTCCAGTGGCGCAATCGGTtAGCGCGCGGTACTTATAcagcagtacatgcagagcaATGCCGAGGtTGTGAGTTCGAGCCTCACCTGGAGCA Str: >>>>>>>..>>>>.........<<<<.>>>>>..........................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr2.trna6 (75124046-75124118) Length: 73 bp Type: Sup Anticodon: TCA at 33-35 (75124078-75124080) Score: 21.3 Filtered, Possible pseudogene: HMM Sc=25.80 Sec struct Sc=-4.50 * | * | * | * | * | * | * | Seq: GcctgTGGTCTAGTGGTtAGAATTcAGTGTTTTCAGTGCTCTAGTCCAGGTTCAATTCCTGGtcaGGGAACCA Str: >......>>.>........<.<<..>>.>>.......<<.<<...>>>>>.......<<<<<.........<. chr2.trna7 (85085876-85085948) Length: 73 bp Type: Val Anticodon: TAC at 34-36 (85085909-85085911) Score: 47.6 Filtered: HMM Sc=29.80 Sec struct Sc=17.80 * | * | * | * | * | * | * | Seq: GGTTCCATAGTGTAACAGTtATCATGTCTGCTTTACACACTGAAGGtCCTGGGTTCAAACTCCAGTGGAACCA Str: >>>>>>>..>>>..........<<<.>>.>.........<.<<.....>>>>>.......<<<<<<<<<<<<. chr2.trna8 (87339573-87339644) Length: 72 bp Type: Pro Anticodon: AGG at 33-35 (87339605-87339607) Score: 28.9 Filtered, Possible pseudogene: HMM Sc=28.30 Sec struct Sc=0.60 * | * | * | * | * | * | * | Seq: GGCTGGTTGGTCTAGGGCTATGATTCTCACTTAGGGTGCAAAAGGtCCTGGGTTCAAATCCCAGAGGAGCCC Str: >>>>..>..>>>.........<<<..>..>.......<..<......>>>>>.......<<<<<<..<<<<. chr2.trna10 (157257281-157257352) Length: 72 bp Type: Ala Anticodon: CGC at 33-35 (157257313-157257315) Score: 74.4 HMM Sc=54.40 Sec struct Sc=20.00 * | * | * | * | * | * | * | Seq: GGGGATGTAGCTCAGTGGTAGAGCGCGCGCTTCGCATGTGTGAGGtCCCGGGTTCAATCCCCGGCATCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr2.trna12 (219110549-219110641) Length: 93 bp Type: Tyr Anticodon: ATA at 34-36 (219110582-219110584) Score: 57.6 Possible intron: 38-57 (219110586-219110605) HMM Sc=34.40 Sec struct Sc=23.20 * | * | * | * | * | * | * | * | * | Seq: CCTTCAATAGTTCAGCTGGTAGAGCAGAGGACTATAGctacttcctcagtaggagacGTCCTTAGGtTGCTGGTTCGATTCCAGCTTGAAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>...........................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr2.trna13 (219491140-219491207) Length: 68 bp Type: Ser Anticodon: TGA at 30-32 (219491169-219491171) Score: 26.3 Filtered, Possible pseudogene: HMM Sc=27.40 Sec struct Sc=-1.10 * | * | * | * | * | * | * Seq: GcaCAGCCCAGTGGTgcAGGGCATGGCTCTGACACCTGGCGgCCTGGGTTCAAATCCCAGCTTCTACA Str: >....>>>>.........<<<<.>>>.........<<<.....>>>>>.......<<<<<......<. chr2.trna14 (224186387-224186315) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (224186354-224186352) Score: 34.5 Filtered, Possible pseudogene: HMM Sc=41.00 Sec struct Sc=-6.50 * | * | * | * | * | * | * | Seq: GTTGGGGTAACTCAGTTGGTAGAGTAGCAGACTTTTCATCTGAGGGtCCAGGGTTTAAGTCCATGTCCAGGCA Str: >>>.>>>..>>>>........<<<<..>>>>.......<<<<......>>.>>.......<<.<<<<<.<<<. chr2.trna15 (204229201-204229129) Length: 73 bp Type: Glu Anticodon: TTC at 33-35 (204229169-204229167) Score: 36.1 Filtered, Possible pseudogene: HMM Sc=44.30 Sec struct Sc=-8.20 * | * | * | * | * | * | * | Seq: GCAATGGTGGTTCAGTGGTAGAATTCTCGCCTTTCACACAGGAGaCCCGGGTTCAATTCCTGaCCCAtgTACA Str: >.>.>>>..>>>>.......<<<<.>>.>.........<.<<.....>>>>.......<<<<..<<<..<.<. chr2.trna16 (159738243-159738171) Length: 73 bp Type: Glu Anticodon: CTC at 35-37 (159738209-159738207) Score: 21.4 Filtered, Possible pseudogene: HMM Sc=22.00 Sec struct Sc=-0.60 * | * | * | * | * | * | * | Seq: TCCcCTGGTGGTCTAGTGCTtAGGATTTGGCACTCTCGCCACCGCAgCCTGCGTTCAATTCCCGGTCAGGGAA Str: >>>.>>>>..>>>>........<<<<.>>>...........<<<....>>>.>.......<.<<<<<<<<<<. chr2.trna17 (157257729-157257659) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (157257697-157257695) Score: 81.0 HMM Sc=59.90 Sec struct Sc=21.10 * | * | * | * | * | * | * | Seq: GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr2.trna18 (152687719-152687652) Length: 68 bp Type: Leu Anticodon: CAA at 50-52 (152687670-152687668) Score: 22.0 Filtered: HMM Sc=15.20 Sec struct Sc=6.80 * | * | * | * | * | * | * Seq: TGCAGATTAGCACAGTGGTttgAGTGTgGATCTAACCTTTGTCTGGGTTCAAAGCCCAGATCcaGCAA Str: >>>.>>>..>>>>..........<<<<...............>>>>>.......<<<<<<<<..<<<. chr2.trna19 (131094772-131094701) Length: 72 bp Type: Glu Anticodon: TTC at 34-36 (131094739-131094737) Score: 72.5 HMM Sc=47.50 Sec struct Sc=25.00 * | * | * | * | * | * | * | Seq: TCCCATATGGTCTAGCGGTtAGGATTCCTGGTTTTCACCCAGGTGGCCCGGGTTCGACTCCCGGTATGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr2.trna22 (70476193-70476123) Length: 71 bp Type: Gly Anticodon: CCC at 33-35 (70476161-70476159) Score: 75.1 HMM Sc=46.00 Sec struct Sc=29.10 * | * | * | * | * | * | * | Seq: GCGCCGCTGGTGTAGTGGTATCATGCAAGATTCCCATTCTTGCGaCCCGGGTTCGATTCCCGGGCGGCGCA Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr2.trna23 (45937513-45937441) Length: 73 bp Type: Gln Anticodon: TTG at 34-36 (45937480-45937478) Score: 38.0 Filtered, Possible pseudogene: HMM Sc=37.80 Sec struct Sc=0.20 * | * | * | * | * | * | * | Seq: GGCTGTGTACCTCAGTGGGcAAGGGTATGGACTTTGAAGCCAGACTaTTTGGGTTCAAATCCCAGCTTGGCCT Str: >>>>>.>..>>>..........<<<..>>>.........<<<......>>>>>.......<<<<<<.<<<<<. chr3.trna1 (15252973-15253048) Length: 76 bp Type: Lys Anticodon: TTT at 37-39 (15253009-15253011) Score: 41.4 Filtered: HMM Sc=30.50 Sec struct Sc=10.90 * | * | * | * | * | * | * | * Seq: GCCTGGATAGCTCCTTCGGTAGAGCatcATCAGACTTTTAATGTGAGGGtCCAGGGTTCAAGTTCCTGTTTGGGCG Str: >>>>>>>..>>>>........<<<<....>>>.>.......<.<<<.....>>>>>.......<<<<<<<<<<<<. chr3.trna2 (123860719-123860791) Length: 73 bp Type: Pro Anticodon: GGG at 35-37 (123860753-123860755) Score: 20.7 Filtered, Possible pseudogene: HMM Sc=19.20 Sec struct Sc=1.50 * | * | * | * | * | * | * | Seq: AGCAGTGTGGGCCAGTGGGaAGTGCTCAGgCTTTGGGGCTGgGAGGaTCTGGGTTTGAATCCCAGCTCTGCTG Str: >>>>>.>..>..>........<..<.>...>.........<.<.....>>>>>.......<<<<<<.<<<<<. chr3.trna3 (169490018-169490090) Length: 73 bp Type: Val Anticodon: AAC at 34-36 (169490051-169490053) Score: 79.4 HMM Sc=49.30 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTAACACGCGAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr3.trna4 (184366165-184366095) Length: 71 bp Type: Asp Anticodon: GTC at 34-36 (184366132-184366130) Score: 38.2 Filtered: HMM Sc=16.30 Sec struct Sc=21.90 * | * | * | * | * | * | * | Seq: TTCTTGTTAATATAGTGGTgAGTATTCCCACCTGTCATGCGGGAGACGGGGTTCAATTCCCTGATGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>.>.......<.<<<...>>>>>.......<<<<<<<<<<<<. chr3.trna5 (148221309-148221228) Length: 82 bp Type: Leu Anticodon: AAG at 35-37 (148221275-148221273) Score: 27.5 Filtered: HMM Sc=15.20 Sec struct Sc=12.30 * | * | * | * | * | * | * | * | Seq: GGTAGCATGGCTGAGTGGTcTAAGaTTCTGAATTAAGTCTCCAGTCTCTTTGGGGgCGTGGTtTTCAATCCCACCGCTGCTA Str: >>>>>>...>>>..........<<.<.>>>.>.......<.<<<.>>>...<<<...>>>>.........<<<<.<<<<<<. chr3.trna6 (131950713-131950642) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (131950681-131950679) Score: 77.2 HMM Sc=56.90 Sec struct Sc=20.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCTGGTTCAAATCCAGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr3.trna7 (131948015-131947944) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (131947983-131947981) Score: 79.3 HMM Sc=62.00 Sec struct Sc=17.30 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCTGGTTCAAATCCAGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr3.trna8 (111068577-111068503) Length: 75 bp Type: Undet Anticodon: NNN at 0-0 (0-0) Score: 26.7 Filtered, Possible pseudogene: HMM Sc=24.30 Sec struct Sc=2.40 * | * | * | * | * | * | * | Seq: CCCaaTGcTGTAGCTCAGCAGCtAGGGCTTTGTCTTTTCAAAATGGCAGCCTGGGTTCAATTCCCAGCTTAGGGA Str: >>>..>>..>..>>>>........<<<<.>>..........<<.......>>>>>.......<<<<<<.<<<<<. chr3.trna10 (45730563-45730491) Length: 73 bp Type: Arg Anticodon: ACG at 34-36 (45730530-45730528) Score: 64.2 HMM Sc=45.60 Sec struct Sc=18.60 * | * | * | * | * | * | * | Seq: GGGCCAGTGGCGCAATGGAtAACGCGTCTGACTACGGATCAGAAGAtTCTAGGTTCGACTCCTGGCTGGCTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr3.trna11 (17741464-17741385) Length: 80 bp Type: Cys Anticodon: GCA at 34-36 (17741431-17741429) Score: 40.9 Filtered, Possible pseudogene: HMM Sc=38.60 Sec struct Sc=2.30 * | * | * | * | * | * | * | * Seq: GGGGGTATATCTCAGGGGGcAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTGAAATCCGGGtgctggaTTTTCTCA Str: >>>>>.>...>>>........<<<..>>>>>.......<<<<<.....>>>>>.......<<<<<.......<.<<<<<. chr4.trna1 (124430076-124430005) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (124430044-124430042) Score: 81.9 HMM Sc=61.60 Sec struct Sc=20.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTCAAATCCGGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr4.trna2 (40908815-40908743) Length: 73 bp Type: Gln Anticodon: TTG at 34-36 (40908782-40908780) Score: 31.7 Filtered, Possible pseudogene: HMM Sc=26.80 Sec struct Sc=4.90 * | * | * | * | * | * | * | Seq: GACCATGTGGCCTAAGGGAaAAGACATCTCACTTTGGGTCAGAAGAtTGAGGGTTCAAGTCCTTTCATGGTCA Str: >>>>>>>..>.>>........<<.<.>>>.>.......<.<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna1 (151988596-151988771) Length: 176 bp Type: Cys Anticodon: ACA at 33-35 (151988628-151988630) Score: 35.9 Possible intron: 37-133 (151988632-151988728) Filtered, Possible pseudogene: HMM Sc=40.00 Sec struct Sc=-4.10 * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * | * Seq: GGCTGTATAGCTCAGTGGTAGAGCATTTGACTACAGaatcctatactcaggggaaggagaactgggggtttctcagtgggtcaaaggacttgtagtggtaaatcaaaagcaactctataagctatgtaacaaaCTTTAAAGtCATatgtagctGGGTTCAAATCCTGTTTCTGCCA Str: >>>.>.>..>>>>.......<<<<.>>.>>........................................................................................................<<.<<....>>........>>>.......<<<<<<.<.<<<. chr5.trna2 (180524070-180524142) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (180524103-180524105) Score: 79.4 HMM Sc=49.30 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTCACACGCGAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna3 (180528840-180528921) Length: 82 bp Type: Leu Anticodon: AAG at 35-37 (180528874-180528876) Score: 75.2 HMM Sc=53.50 Sec struct Sc=21.70 * | * | * | * | * | * | * | * | Seq: GGTAGCGTGGCCGAGCGGTctAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<. chr5.trna4 (180591154-180591226) Length: 73 bp Type: Val Anticodon: AAC at 34-36 (180591187-180591189) Score: 79.4 HMM Sc=49.30 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTAACACGCGAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna5 (180596610-180596682) Length: 73 bp Type: Val Anticodon: AAC at 34-36 (180596643-180596645) Score: 79.4 HMM Sc=49.30 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTAACACGCGAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna6 (180600650-180600722) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (180600683-180600685) Score: 79.4 HMM Sc=49.30 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTCACACGCGAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna7 (180614701-180614782) Length: 82 bp Type: Leu Anticodon: AAG at 35-37 (180614735-180614737) Score: 74.8 HMM Sc=55.10 Sec struct Sc=19.70 * | * | * | * | * | * | * | * | Seq: GGTAGCGTGGCCGAGCGGTctAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGgCGTGGGTTCGAATCCCACCGCTGCCA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<. chr5.trna8 (180633868-180633939) Length: 72 bp Type: Ala Anticodon: TGC at 33-35 (180633900-180633902) Score: 79.7 HMM Sc=55.30 Sec struct Sc=24.40 * | * | * | * | * | * | * | Seq: GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGcCCCGGGTTCGATCCCCGGCATCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna9 (180634755-180634827) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (180634788-180634790) Score: 87.8 HMM Sc=68.80 Sec struct Sc=19.00 * | * | * | * | * | * | * | Seq: GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGtCGTGGGTTCGAGCCCCACGTTGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna10 (180649467-180649395) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (180649434-180649432) Score: 79.4 HMM Sc=49.30 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTCACACGCGAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna11 (180649051-180648979) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (180649018-180649016) Score: 87.8 HMM Sc=68.80 Sec struct Sc=19.00 * | * | * | * | * | * | * | Seq: GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGtCGTGGGTTCGAGCCCCACGTTGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna12 (180645342-180645270) Length: 73 bp Type: Val Anticodon: AAC at 34-36 (180645309-180645307) Score: 79.4 HMM Sc=49.30 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTAACACGCGAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna13 (180618758-180618687) Length: 72 bp Type: Thr Anticodon: TGT at 34-36 (180618725-180618723) Score: 75.7 HMM Sc=50.60 Sec struct Sc=25.10 * | * | * | * | * | * | * | Seq: GGCTCCATAGCTCAGGGGTtAGAGCACTGGTCTTGTAAACCAGGGtCGCGAGTTCAAATCTCGCTGGGGCCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr5.trna14 (180615925-180615854) Length: 72 bp Type: Pro Anticodon: TGG at 33-35 (180615893-180615891) Score: 70.3 HMM Sc=43.90 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna15 (180615488-180615416) Length: 73 bp Type: Val Anticodon: AAC at 34-36 (180615455-180615453) Score: 79.4 HMM Sc=49.30 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTcATCACGTTCGCCTAACACGCGAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna16 (180601125-180601044) Length: 82 bp Type: Leu Anticodon: AAG at 35-37 (180601091-180601089) Score: 75.2 HMM Sc=53.50 Sec struct Sc=21.70 * | * | * | * | * | * | * | * | Seq: GGTAGCGTGGCCGAGCGGTctAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<. chr5.trna17 (180591645-180591561) Length: 85 bp Type: Leu Anticodon: AAG at 35-37 (180591611-180591609) Score: 24.1 Possible intron: 39-47 (180591607-180591599) Filtered, Possible pseudogene: HMM Sc=30.40 Sec struct Sc=-6.30 * | * | * | * | * | * | * | * | Seq: GATAGCAAGGCCGAGCGGTctAAGGCTCCGGATTAAGGcgccggtgtCTTCGGAGGCATGGGTTCGAATTCCACctcTGCCAACT Str: >.>.>>>..>>>...........<<<.>>>>>................<<<<<.....>>>>.......<<<<....<<<.<.<. chr5.trna18 (180529325-180529253) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (180529292-180529290) Score: 79.4 HMM Sc=49.30 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTCACACGCGAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr5.trna19 (180524555-180524474) Length: 82 bp Type: Leu Anticodon: AAG at 35-37 (180524521-180524519) Score: 75.2 HMM Sc=53.50 Sec struct Sc=21.70 * | * | * | * | * | * | * | * | Seq: GGTAGCGTGGCCGAGCGGTctAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<. chr5.trna20 (167816715-167816644) Length: 72 bp Type: Lys Anticodon: CTT at 34-36 (167816682-167816680) Score: 29.9 Filtered: HMM Sc=23.30 Sec struct Sc=6.60 * | * | * | * | * | * | * | Seq: GCCCAACTGGTTCAGTCGGTAGAGAATGAGACTCTTAATCTCAGGtCATAGATTCATGTCACATGTTGGGTG Str: >>>>>>>...>>>........<<<..>>>>>.......<<<<<....>>.............<<<<<<<<<. chr5.trna21 (151248145-151248074) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (151248112-151248110) Score: 22.8 Filtered, Possible pseudogene: HMM Sc=29.30 Sec struct Sc=-6.50 * | * | * | * | * | * | * | Seq: GGTAGTGTAGTCTACTGGTTAAACGCtTGGGCTCTGACATTAACGtCCTGGGTTCAAATCCCAGCTTTGTCA Str: >>>>>.>..>>.>.......<.<<...>>>.........<<<.....>>>>>.......<<<<<<.<<<<<. chr5.trna22 (141774059-141773988) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (141774026-141774024) Score: 40.3 Filtered: HMM Sc=19.00 Sec struct Sc=21.30 * | * | * | * | * | * | * | Seq: TCCTCATCAGTATAGTGGTgAGTATCCCCGCCTGTCACGCGGGAGaCTGGGGTTCGATTCCCTGAGGAGGAG Str: >>>>>.>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<.<<<<<. chr5.trna23 (26198611-26198539) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (26198578-26198576) Score: 58.2 HMM Sc=47.60 Sec struct Sc=10.60 * | * | * | * | * | * | * | Seq: GCCCGACTACCTCAGTCGGTGGAGCATGGGACTCTTCATCCCAGGGtTGTGGGTTCGAGCCCCACATTGGGCA Str: >>>>>>....>>>........<<<..>>>>>.......<<<<<.....>>>>>.......<<<<<.<<<<<<. chr6.trna1 (18836402-18836473) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (18836435-18836437) Score: 71.5 HMM Sc=44.00 Sec struct Sc=27.50 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTtAGCACTCTGGACTCTGAATCCAGCGaTCCGAGTTCAAATCTCGGTGGAACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna2 (26286754-26286825) Length: 72 bp Type: iMet Anticodon: CAT at 33-35 (26286786-26286788) Score: 60.4 HMM Sc=30.80 Sec struct Sc=29.60 * | * | * | * | * | * | * | Seq: AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGtCGATGGATCGAAACCATCCTCTGCTA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna3 (26299905-26299977) Length: 73 bp Type: Arg Anticodon: TCG at 34-36 (26299938-26299940) Score: 66.8 HMM Sc=46.00 Sec struct Sc=20.80 * | * | * | * | * | * | * | Seq: GACCACGTGGCCTAATGGAtAAGGCGTCTGACTTCGGATCAGAAGAtTGAGGGTTCGAATCCCTTCGTGGTTA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna4 (26323046-26323118) Length: 73 bp Type: Arg Anticodon: TCG at 34-36 (26323079-26323081) Score: 70.3 HMM Sc=47.80 Sec struct Sc=22.50 * | * | * | * | * | * | * | Seq: GACCACGTGGCCTAATGGAtAAGGCGTCTGACTTCGGATCAGAAGAtTGAGGGTTCGAATCCCTCCGTGGTTA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna5 (26327817-26327898) Length: 82 bp Type: Ser Anticodon: AGA at 34-36 (26327850-26327852) Score: 89.6 HMM Sc=56.90 Sec struct Sc=32.70 * | * | * | * | * | * | * | * | Seq: GTAGTCGTGGCCGAGTGGTtAAGGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna6 (26328368-26328440) Length: 73 bp Type: Arg Anticodon: ACG at 34-36 (26328401-26328403) Score: 67.6 HMM Sc=45.90 Sec struct Sc=21.70 * | * | * | * | * | * | * | Seq: GGGCCAGTGGCGCAATGGAtAACGCGTCTGACTACGGATCAGAAGAtTCCAGGTTCGACTCCTGGCTGGCTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna7 (26521436-26521518) Length: 83 bp Type: Leu Anticodon: CAG at 35-37 (26521470-26521472) Score: 78.2 HMM Sc=47.50 Sec struct Sc=30.70 * | * | * | * | * | * | * | * | Seq: GTCAGGATGGCCGAGCGGTctAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAATCCCACTCCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna8 (26537726-26537798) Length: 73 bp Type: Arg Anticodon: ACG at 34-36 (26537759-26537761) Score: 67.6 HMM Sc=45.90 Sec struct Sc=21.70 * | * | * | * | * | * | * | Seq: GGGCCAGTGGCGCAATGGAtAACGCGTCTGACTACGGATCAGAAGAtTCCAGGTTCGACTCCTGGCTGGCTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna9 (26538282-26538354) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (26538315-26538317) Score: 79.4 HMM Sc=49.30 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTCACACGCGAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna10 (26553731-26553802) Length: 72 bp Type: Ala Anticodon: CGC at 33-35 (26553763-26553765) Score: 79.7 HMM Sc=55.30 Sec struct Sc=24.40 * | * | * | * | * | * | * | Seq: GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTCGCATGTATGAGGtCCCGGGTTCGATCCCCGGCATCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna11 (26554350-26554423) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (26554384-26554386) Score: 81.2 HMM Sc=64.80 Sec struct Sc=16.40 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTtAGAGCGTGGTGCTAATAACGCCAAGGtCGCGGGTTCGATCCCCGTACGGGCCA Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. chr6.trna12 (26555498-26555569) Length: 72 bp Type: Pro Anticodon: AGG at 33-35 (26555530-26555532) Score: 70.2 HMM Sc=43.80 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna13 (26556774-26556846) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (26556807-26556809) Score: 87.8 HMM Sc=68.80 Sec struct Sc=19.00 * | * | * | * | * | * | * | Seq: GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGtCGTGGGTTCGAGCCCCACGTTGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna14 (26569086-26569176) Length: 91 bp Type: Tyr Anticodon: GTA at 34-36 (26569119-26569121) Score: 77.9 Possible intron: 38-55 (26569123-26569140) HMM Sc=50.00 Sec struct Sc=27.90 * | * | * | * | * | * | * | * | * | Seq: CCTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGttggctgtgtccttagacATCCTTAGGtCGCTGGTTCGAATCCGGCTCGAAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>.........................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna15 (26575798-26575887) Length: 90 bp Type: Tyr Anticodon: GTA at 34-36 (26575831-26575833) Score: 72.4 Possible intron: 38-54 (26575835-26575851) HMM Sc=48.20 Sec struct Sc=24.20 * | * | * | * | * | * | * | * | * Seq: CTTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGgttcattaaactaaggcATCCTTAGGtCGCTGGTTCGAATCCGGCTCGAAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>........................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna16 (26577332-26577420) Length: 89 bp Type: Tyr Anticodon: GTA at 34-36 (26577365-26577367) Score: 77.5 Possible intron: 38-53 (26577369-26577384) HMM Sc=51.40 Sec struct Sc=26.10 * | * | * | * | * | * | * | * | * Seq: CCTTCGATAGCTCAGTTGGTAGAGCGGAGGACTGTAGgctcattaagcaaggtATCCTTAGGtCGCTGGTTCGAATCCGGCTCGGAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna17 (26595102-26595190) Length: 89 bp Type: Tyr Anticodon: GTA at 34-36 (26595135-26595137) Score: 75.1 Possible intron: 38-53 (26595139-26595154) HMM Sc=48.90 Sec struct Sc=26.20 * | * | * | * | * | * | * | * | * Seq: CCTTCGATAGCTCAGCTGGTAGAGCGGAGGACTGTAGgggtttgaatgtggtcATCCTTAGGtCGCTGGTTCGAATCCGGCTCGGAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna18 (26673590-26673662) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26673623-26673625) Score: 58.9 HMM Sc=34.90 Sec struct Sc=24.00 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAAGTGGTAGAGCGCTTGCTTAGCATGCAAGAGGtAGTGGGATCAATGCCCACATTCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna19 (26682715-26682787) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26682748-26682750) Score: 60.0 HMM Sc=36.00 Sec struct Sc=24.00 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAAGTGGTAGAGCGCTTGCTTAGCATGCAAGAGGtAGTGGGATCGATGCCCACATTCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna20 (26687485-26687557) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26687518-26687520) Score: 60.1 HMM Sc=36.10 Sec struct Sc=24.00 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAAGTGGTAGAGCGCTTGCTTAGCACGCAAGAGGtAGTGGGATCGATGCCCACATTCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna21 (26701712-26701784) Length: 73 bp Type: Met Anticodon: CAT at 34-36 (26701745-26701747) Score: 79.2 HMM Sc=55.30 Sec struct Sc=23.90 * | * | * | * | * | * | * | Seq: GCCCTCTTAGCGCAGCTGGCAGCGCGTCAGTCTCATAATCTGAAGGtCCTGAGTTCAAGCCTCAGAGAGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna22 (26705606-26705678) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26705639-26705641) Score: 58.7 HMM Sc=34.60 Sec struct Sc=24.10 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAAGCGGTAGAGCGCTTGCTTAGCATGCAAGAGGtAGTGGGATCGATGCCCACATTCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna23 (26713898-26713970) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26713931-26713933) Score: 24.8 Filtered: HMM Sc=14.00 Sec struct Sc=10.80 * | * | * | * | * | * | * | Seq: GAAGAAGTAGCTCAAGTGGTGGAGTGCTCGCTTAGCATGTGAGAGGtAGTGGGATTGATGCCCACATTCTCCA Str: >.>>>>...>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<.<<<<.<. chr6.trna24 (26728256-26728328) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26728289-26728291) Score: 47.3 Filtered: HMM Sc=29.20 Sec struct Sc=18.10 * | * | * | * | * | * | * | Seq: GGGGAATTGGCTCAAGCGGTAGAGCGCTTGCTTAGCATGCAAGAGGtAGCAGGATCGACGCCTGCACTCTCCA Str: >>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<. chr6.trna25 (26730737-26730809) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26730770-26730772) Score: 58.3 HMM Sc=34.20 Sec struct Sc=24.10 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAGGCGGTAGAGCGCTCGCTTAGCATGCGAGAGGtAGCGGGATCGACGCCCGCATTCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna26 (26751918-26751990) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26751951-26751953) Score: 40.0 Filtered: HMM Sc=26.90 Sec struct Sc=13.10 * | * | * | * | * | * | * | Seq: GGGGGATTAGCTCAAGCGGTAGGGTGCCTGCTTAGCATGCAAGAGGtAGCAGGATCGACGCCTGCATTCTCCA Str: >>>>>>>..>>>>........<<<<.>.>>>.......<<<.<.....>>>>>.......<<<<<<<<<<<<. chr6.trna27 (26752630-26752703) Length: 74 bp Type: Undet Anticodon: NNN at 0-0 (0-0) Score: 31.4 Filtered: HMM Sc=13.60 Sec struct Sc=17.80 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAGGCGGTGGAGCGCTCGCTTAGcTATGCGAGAGGtAGCGAGATCGACGCCCGCATTCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>........<<<<<.....>>>.>.......<.<<<<<<<<<<. chr6.trna28 (26766444-26766516) Length: 73 bp Type: Met Anticodon: CAT at 34-36 (26766477-26766479) Score: 80.2 HMM Sc=56.30 Sec struct Sc=23.90 * | * | * | * | * | * | * | Seq: GCCCTCTTAGCGCAGCGGGcAGCGCGTCAGTCTCATAATCTGAAGGtCCTGAGTTCGAGCCTCAGAGAGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna29 (26780832-26780905) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (26780866-26780868) Score: 81.2 HMM Sc=64.80 Sec struct Sc=16.40 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTcAGAGCGTGGTGCTAATAACGCCAAGGtCGCGGGTTCGATCCCCGTACGGGCCA Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. chr6.trna30 (26988125-26988218) Length: 94 bp Type: Ile Anticodon: TAT at 35-37 (26988159-26988161) Score: 73.1 Possible intron: 39-58 (26988163-26988182) HMM Sc=45.00 Sec struct Sc=28.10 * | * | * | * | * | * | * | * | * | Seq: GCTCCAGTGGCGCAATCGGTtAGCGCGCGGTACTTATAtggcagtatgtgtgcgagtgATGCCGAGGtTGTGAGTTCGAGCCTCACCTGGAGCA Str: >>>>>>>..>>>>.........<<<<.>>>>>...........................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna31 (27059521-27059592) Length: 72 bp Type: Pro Anticodon: CGG at 33-35 (27059553-27059555) Score: 65.9 HMM Sc=39.70 Sec struct Sc=26.20 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGTGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna32 (27065085-27065166) Length: 82 bp Type: Ser Anticodon: GCT at 34-36 (27065118-27065120) Score: 91.9 HMM Sc=63.40 Sec struct Sc=28.50 * | * | * | * | * | * | * | * | Seq: GACGAGGTGGCCGAGTGGTtAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATCCCACCCTCGTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna33 (27118022-27118094) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (27118055-27118057) Score: 43.8 Filtered: HMM Sc=34.10 Sec struct Sc=9.70 * | * | * | * | * | * | * | Seq: GTTTCTGTAGTATGGTGGTtATCACGTTAGTCTCACACGTGAAAGGtCCCTGGTTCGAAACCAGGTGGAAACA Str: >>>>>>>..>>............<<.>>.>>.......<<.<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna34 (27125906-27125977) Length: 72 bp Type: His Anticodon: GTG at 34-36 (27125939-27125941) Score: 60.1 HMM Sc=29.80 Sec struct Sc=30.30 * | * | * | * | * | * | * | Seq: GCCGTGATCGTATAGTGGTtAGTACTCTGCGTTGTGGCCGCAGCAaCCTCGGTTCGAATCCGAGTCACGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna35 (27130050-27130123) Length: 74 bp Type: Thr Anticodon: AGT at 35-37 (27130084-27130086) Score: 80.6 HMM Sc=60.60 Sec struct Sc=20.00 * | * | * | * | * | * | * | Seq: GGCCCTGTGGCTTAGCTGGTcAAAGCGCCTGTCTAGTAAACAGGAGAtCCTGGGTTCGAATCCCAGCGGGGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna36 (27177628-27177709) Length: 82 bp Type: Ser Anticodon: CGA at 34-36 (27177661-27177663) Score: 94.0 HMM Sc=65.10 Sec struct Sc=28.90 * | * | * | * | * | * | * | * | Seq: GCTGTGATGGCCGAGTGGTtAAGGCGTTGGACTCGAAATCCAATGGGGTCTCCCCGCGCAGGTTCAAATCCTGCTCACAGCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna37 (27182952-27183024) Length: 73 bp Type: Arg Anticodon: ACG at 34-36 (27182985-27182987) Score: 64.2 HMM Sc=45.60 Sec struct Sc=18.60 * | * | * | * | * | * | * | Seq: GGGCCAGTGGCGCAATGGAtAACGCGTCTGACTACGGATCAGAAGAtTCTAGGTTCGACTCCTGGCTGGCTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna38 (27203288-27203360) Length: 73 bp Type: Val Anticodon: AAC at 34-36 (27203321-27203323) Score: 67.0 HMM Sc=48.80 Sec struct Sc=18.20 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTTGCCTAACACGCGAAAGGtCCCCGGTTCGAAACCGGGCAGAAACA Str: >>>>>.>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<. chr6.trna39 (27228710-27228784) Length: 75 bp Type: Ile Anticodon: AAT at 35-37 (27228744-27228746) Score: 32.4 Filtered: HMM Sc=24.60 Sec struct Sc=7.80 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCGGTTGCTtAGAGTGTTGTGTTAATTACGCtAAAGGtCGTGGGTTTGATCCTCTTACCGGCCA Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<.<<.....>.>>>.......<<<.<<<<<<<<. chr6.trna40 (27241739-27241812) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (27241773-27241775) Score: 79.3 HMM Sc=61.60 Sec struct Sc=17.70 * | * | * | * | * | * | * | Seq: GGCTGGTTAGTTCAGTTGGTtAGAGCGTGGTGCTAATAACGCCAAGGtCGTGGGTTCGATCCCCATATCGGCCA Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna41 (27251864-27251937) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (27251898-27251900) Score: 38.6 Filtered, Possible pseudogene: HMM Sc=41.90 Sec struct Sc=-3.30 * | * | * | * | * | * | * | Seq: GGCCGGTTAACTTAATTGGTtAGAGCGTGGTGCTAATAATGTCAAGGtTGCGGGTTGGATCCCCGAACGGGCCA Str: >>>>.>>...>>>.........<<<..>>>>>.......<<<<<......>>>>.......<<<<.<<.<<<<. chr6.trna42 (27258405-27258477) Length: 73 bp Type: Val Anticodon: TAC at 34-36 (27258438-27258440) Score: 68.7 HMM Sc=38.20 Sec struct Sc=30.50 * | * | * | * | * | * | * | Seq: GTTTCCGTGGTGTAGTGGTtATCACATTCGCCTTACACGCGAAAGGtCCTCGGGTCGAAACCGAGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna43 (27261671-27261744) Length: 74 bp Type: Ser Anticodon: ACT at 35-37 (27261705-27261707) Score: 47.0 Filtered, Possible pseudogene: HMM Sc=50.30 Sec struct Sc=-3.30 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTtAGAGCGTGCTGCTACTAATGCCAGGGtCGAGGTTTCGATCCCCGTACGGGCCT Str: >>>>.>>..>>>>.........<<<<.>>.>>.......<<.<<.....>.>>.........<<.<<<.<<<<. chr6.trna44 (27263212-27263283) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (27263245-27263247) Score: 66.2 HMM Sc=41.90 Sec struct Sc=24.30 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTtAGCACTCTGGACTCTGAATCCGGTAaTCCGAGTTCAAATCTCGGTGGAACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna45 (27265775-27265856) Length: 82 bp Type: Ser Anticodon: GCT at 34-36 (27265808-27265810) Score: 91.0 HMM Sc=63.40 Sec struct Sc=27.60 * | * | * | * | * | * | * | * | Seq: GACGAGGTGGCCGAGTGGTtAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATCCCACCTTCGTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna46 (27446591-27446672) Length: 82 bp Type: Ser Anticodon: AGA at 34-36 (27446624-27446626) Score: 89.6 HMM Sc=56.90 Sec struct Sc=32.70 * | * | * | * | * | * | * | * | Seq: GTAGTCGTGGCCGAGTGGTtAAGGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna47 (27447453-27447524) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (27447486-27447488) Score: 66.5 HMM Sc=35.70 Sec struct Sc=30.80 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTgAGTATCCCCGCCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna48 (27463593-27463674) Length: 82 bp Type: Ser Anticodon: AGA at 34-36 (27463626-27463628) Score: 89.6 HMM Sc=56.90 Sec struct Sc=32.70 * | * | * | * | * | * | * | * | Seq: GTAGTCGTGGCCGAGTGGTtAAGGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna49 (27470818-27470899) Length: 82 bp Type: Ser Anticodon: AGA at 34-36 (27470851-27470853) Score: 89.6 HMM Sc=56.90 Sec struct Sc=32.70 * | * | * | * | * | * | * | * | Seq: GTAGTCGTGGCCGAGTGGTtAAGGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna50 (27471523-27471594) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (27471556-27471558) Score: 66.5 HMM Sc=35.70 Sec struct Sc=30.80 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTgAGTATCCCCGCCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna51 (27487308-27487379) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (27487341-27487343) Score: 71.5 HMM Sc=44.00 Sec struct Sc=27.50 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTtAGCACTCTGGACTCTGAATCCAGCGaTCCGAGTTCAAATCTCGGTGGAACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna52 (27499987-27500068) Length: 82 bp Type: Ser Anticodon: AGA at 34-36 (27500020-27500022) Score: 87.2 HMM Sc=54.30 Sec struct Sc=32.90 * | * | * | * | * | * | * | * | Seq: GTAGTCGTGGCCGAGTGGTtAAGGCGATGGACTAGAAATCCATTGGGGTTTCCCCACGCAGGTTCGAATCCTGCCGACTACG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna53 (27513468-27513549) Length: 82 bp Type: Ser Anticodon: TGA at 34-36 (27513501-27513503) Score: 90.4 HMM Sc=57.50 Sec struct Sc=32.90 * | * | * | * | * | * | * | * | Seq: GTAGTCGTGGCCGAGTGGTtAAGGCGATGGACTTGAAATCCATTGGGGTTTCCCCGCGCAGGTTCGAATCCTGCCGACTACG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna54 (27529963-27530049) Length: 87 bp Type: Arg Anticodon: TCT at 34-36 (27529996-27529998) Score: 61.4 Possible intron: 38-51 (27530000-27530013) HMM Sc=48.20 Sec struct Sc=13.20 * | * | * | * | * | * | * | * | * Seq: GGCTCTGTGGCGCAATGGAtAGCGCATTGGACTTCTAgcctaaatcaagagATTCAAAGGtTGCGGGTTCGAGTCCCTCCAGAGTCG Str: >>>>>>>..>>>>........<<<<.>>>>>.....................<<<<<.....>.>>>.......<<<.<<<<<<<<. chr6.trna55 (27543846-27543918) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (27543879-27543881) Score: 61.2 Filtered: HMM Sc=51.60 Sec struct Sc=9.60 * | * | * | * | * | * | * | Seq: ACCTGGGTAGCTCAGTAGGTAGAACATCAGACTTTTAATCTGAGGGtCTAGGGTTCAAGTCCCTGTCCAGGCG Str: .>>>>>>..>.>>........<<.<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.. chr6.trna56 (27586135-27586208) Length: 74 bp Type: Thr Anticodon: CGT at 34-36 (27586168-27586170) Score: 66.2 HMM Sc=45.50 Sec struct Sc=20.70 * | * | * | * | * | * | * | Seq: GGCCCTGTAGCTCAGCGGTtGGAGCGCTGGTCTCGTAAACCtAGGGGtCGTGAGTTCAAATCTCACCAGGGCCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<.<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna57 (27599200-27599293) Length: 94 bp Type: Ile Anticodon: TAT at 35-37 (27599234-27599236) Score: 73.1 Possible intron: 39-58 (27599238-27599257) HMM Sc=45.00 Sec struct Sc=28.10 * | * | * | * | * | * | * | * | * | Seq: GCTCCAGTGGCGCAATCGGTtAGCGCGCGGTACTTATAcaacagtatatgtgcgggtgATGCCGAGGtTGTGAGTTCGAGCCTCACCTGGAGCA Str: >>>>>>>..>>>>.........<<<<.>>>>>...........................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna58 (27632545-27632620) Length: 76 bp Type: Phe Anticodon: GAA at 34-36 (27632578-27632580) Score: 50.0 Possible intron: 38-40 (27632582-27632584) Filtered, Possible pseudogene: HMM Sc=46.50 Sec struct Sc=3.50 * | * | * | * | * | * | * | * Seq: GCCGAAATAGCTCAATTGGGAGAGTGTTAGACTGAAGatcTTCTGCAGGtCTCTGGTTCAATTCCGGGTTTCGACA Str: >.>>>>>..>>>>........<<<<..>>>>..........<<<<......>>>>>.......<<<<<<<<<<.<. chr6.trna59 (27636362-27636435) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (27636396-27636398) Score: 75.8 HMM Sc=59.40 Sec struct Sc=16.40 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTCGGCtAGAGCGTGGTGCTAATAACGCCAAGGtCGCGGGTTCGATCCCCGTACGGGCCA Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. chr6.trna60 (27655967-27656040) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (27656001-27656003) Score: 86.3 HMM Sc=64.40 Sec struct Sc=21.90 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTtAGAGCGTGGTGCTAATAACGCCAAGGtCGCGGGTTCGATCCCCGTACTGGCCA Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna61 (27694473-27694546) Length: 74 bp Type: Thr Anticodon: AGT at 35-37 (27694507-27694509) Score: 81.2 HMM Sc=60.00 Sec struct Sc=21.20 * | * | * | * | * | * | * | Seq: GGCTTCGTGGCTTAGCTGGTtAAAGCGCCTGTCTAGTAAACAGGAGAtCCTGGGTTCGAATCCCAGCGAGGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna62 (27745664-27745735) Length: 72 bp Type: iMet Anticodon: CAT at 33-35 (27745696-27745698) Score: 51.7 HMM Sc=22.20 Sec struct Sc=29.50 * | * | * | * | * | * | * | Seq: AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGtCGATGGATCTAAACCATCCTCTGCTA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna63 (28180815-28180896) Length: 82 bp Type: Ser Anticodon: GCT at 34-36 (28180848-28180850) Score: 85.2 HMM Sc=58.30 Sec struct Sc=26.90 * | * | * | * | * | * | * | * | Seq: GACGAGGTGGCCGAGTGGTtAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACACGTGGGTTCGAATCCCATCCTCGTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna64 (28448503-28448575) Length: 73 bp Type: Met Anticodon: CAT at 34-36 (28448536-28448538) Score: 24.1 Filtered, Possible pseudogene: HMM Sc=26.70 Sec struct Sc=-2.60 * | * | * | * | * | * | * | Seq: GCCTTCTTAGCCCtgGAGGCAGCACATCAGTCTCATAATCTGAAGGtCCCGAGCTTGAACCTCAGAGAGGGCA Str: >>>>>>>..>..>........<..<.>>>>.........<<<<.....>.>>>.......<<<.<<<<<<<<. chr6.trna65 (28505367-28505460) Length: 94 bp Type: Ile Anticodon: TAT at 35-37 (28505401-28505403) Score: 72.1 Possible intron: 39-58 (28505405-28505424) HMM Sc=44.00 Sec struct Sc=28.10 * | * | * | * | * | * | * | * | * | Seq: GCTCCAGTGGCGCAATCGGTtAGCGCGCGGTACTTATAagacagtgcacctgtgagcaATGCCGAGGtTGTGAGTTCAAGCCTCACCTGGAGCA Str: >>>>>>>..>>>>.........<<<<.>>>>>...........................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna66 (28557156-28557227) Length: 72 bp Type: Gln Anticodon: TTG at 34-36 (28557189-28557191) Score: 70.0 HMM Sc=42.80 Sec struct Sc=27.20 * | * | * | * | * | * | * | Seq: GGTCCCATGGTGTAATGGTtAGCACTCTGGACTTTGAATCCAGCAaTCCGAGTTCGAATCTCGGTGGGACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna67 (28574933-28575004) Length: 72 bp Type: Ala Anticodon: AGC at 33-35 (28574965-28574967) Score: 80.3 HMM Sc=57.00 Sec struct Sc=23.30 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGTACGAGGtCCCGGGTTCAATCCCCGGCACCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna68 (28611222-28611293) Length: 72 bp Type: Ala Anticodon: TGC at 33-35 (28611254-28611256) Score: 79.7 HMM Sc=55.30 Sec struct Sc=24.40 * | * | * | * | * | * | * | Seq: GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGtCCCGGGTTCGATCCCCGGCATCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna69 (28678366-28678437) Length: 72 bp Type: Ala Anticodon: AGC at 33-35 (28678398-28678400) Score: 84.2 HMM Sc=60.20 Sec struct Sc=24.00 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAGGcCCTGGGTTCAATCCCCAGCACCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna70 (28687481-28687552) Length: 72 bp Type: Ala Anticodon: AGC at 33-35 (28687513-28687515) Score: 78.5 HMM Sc=59.20 Sec struct Sc=19.30 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAGGcCCCGGGTTCAATCCCTGGCACCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna71 (28693795-28693868) Length: 74 bp Type: Thr Anticodon: AGT at 35-37 (28693829-28693831) Score: 80.7 HMM Sc=59.80 Sec struct Sc=20.90 * | * | * | * | * | * | * | Seq: GGCTCCGTAGCTTAGTTGGTtAAAGCGCCTGTCTAGTAAACAGGAGAtCCTGGGTTCGACTCCCAGCGGGGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna72 (28697092-28697163) Length: 72 bp Type: Ala Anticodon: CGC at 33-35 (28697124-28697126) Score: 76.1 HMM Sc=56.20 Sec struct Sc=19.90 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCTTCGCATGTACGAGGcCCCGGGTTCGACCCCCGGCTCCTCCA Str: >>>>>.>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<. chr6.trna73 (28715521-28715593) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (28715554-28715556) Score: 74.9 HMM Sc=59.70 Sec struct Sc=15.20 * | * | * | * | * | * | * | Seq: GCCTGGATAGCTCAGTTGGTAGAACATCAGACTTTTAATCTGACGGtGCAGGGTTCAAGTCCCTGTTCAGGCG Str: >>>>>>>..>.>>........<<.<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna74 (28732164-28732240) Length: 77 bp Type: Phe Anticodon: GAA at 34-36 (28732197-28732199) Score: 65.8 Filtered: HMM Sc=57.20 Sec struct Sc=8.60 * | * | * | * | * | * | * | * Seq: GCCAAAATTGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGtCCCTGGTTCGATCCCGGGTTTcaccaGGTT Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.....<<<. chr6.trna75 (28849165-28849237) Length: 73 bp Type: Arg Anticodon: CCG at 34-36 (28849198-28849200) Score: 67.0 HMM Sc=49.40 Sec struct Sc=17.60 * | * | * | * | * | * | * | Seq: GGCCGCGTGGCCTAATGGAtAAGGCGTCTGATTCCGGATCAGAAGAtTGAGGGTTCGAGTCCCTTCGTGGTCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna76 (28908830-28908934) Length: 105 bp Type: Leu Anticodon: CAA at 35-37 (28908864-28908866) Score: 77.2 Possible intron: 39-60 (28908868-28908889) HMM Sc=53.10 Sec struct Sc=24.10 * | * | * | * | * | * | * | * | * | * | Seq: GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGcttggcttcctcgtgttgaggaTTCTGGTCTCCAATGGAGGCGTGGGTTCGAATCCCACTTCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>.............................<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna77 (28912352-28912424) Length: 73 bp Type: Met Anticodon: CAT at 34-36 (28912385-28912387) Score: 77.4 HMM Sc=55.00 Sec struct Sc=22.40 * | * | * | * | * | * | * | Seq: GCCTCCTTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGtCCTGAGTTCGAACCTCAGAGGGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna78 (28918806-28918878) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (28918839-28918841) Score: 87.8 HMM Sc=67.30 Sec struct Sc=20.50 * | * | * | * | * | * | * | Seq: GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGtCCAGGGTTCAAGTCCCTGTTCGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna79 (28949976-28950047) Length: 72 bp Type: Glu Anticodon: CTC at 34-36 (28950009-28950011) Score: 73.2 HMM Sc=49.00 Sec struct Sc=24.20 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGTtAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna80 (28956779-28956860) Length: 82 bp Type: Leu Anticodon: AAG at 35-37 (28956813-28956815) Score: 73.8 HMM Sc=54.10 Sec struct Sc=19.70 * | * | * | * | * | * | * | * | Seq: GGTAGCGTGGCCGAGCGGTctAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGgCGTGGGTTCAAATCCCACCGCTGCCA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<. chr6.trna81 (37287995-37288067) Length: 73 bp Type: Gln Anticodon: TTG at 34-36 (37288028-37288030) Score: 20.6 Filtered, Possible pseudogene: HMM Sc=16.50 Sec struct Sc=4.10 * | * | * | * | * | * | * | Seq: GTGcAGAGTAGTACAGTGGTTAAACCATGGTCTTTGGAGCCAGACTgCCTGGGGTCGGATCCCAGCTCTCACA Str: >>>.>>>>..>>...........<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<. chr6.trna82 (58149254-58149327) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (58149288-58149290) Score: 81.9 HMM Sc=65.50 Sec struct Sc=16.40 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTtAGAGCGTGGCGCTAATAACGCCAAGGtCGCGGGTTCGATCCCCGTACGGGCCA Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. chr6.trna83 (69914378-69914460) Length: 83 bp Type: Leu Anticodon: TAA at 34-36 (69914411-69914413) Score: 37.1 Filtered, Possible pseudogene: HMM Sc=42.90 Sec struct Sc=-5.80 * | * | * | * | * | * | * | * | Seq: ACTCATTTGGCTGAGTGGTtAAGGCATTGGACTTAAGATCCAATGGAGTAGTGGCTGTGTGGGTTTAAACCCCACTACTGGTA Str: >>>..>...>>>..........<<<.>>>>>.......<<<<<.......>....<..>>>>>.......<<<<<.<..<<<. chr6.trna84 (142578776-142578846) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (142578808-142578810) Score: 48.7 Filtered: HMM Sc=34.80 Sec struct Sc=13.90 * | * | * | * | * | * | * | Seq: GCATGGGTGATTCAGTGGTAGAATTTTCACCTGCCATGCAGGAGGTCCAGGTTCATTTCCTGGCCTATGCA Str: >>>>>>>..>>>>.......<<<<.>>..>.......<..<<....>>>>>.......<<<<<<<<<<<<. chr6.trna85 (144537684-144537766) Length: 83 bp Type: Leu Anticodon: TAA at 34-36 (144537717-144537719) Score: 88.7 HMM Sc=58.10 Sec struct Sc=30.60 * | * | * | * | * | * | * | * | Seq: ACCAGGATGGCCGAGTGGTtAAGGCGTTGGACTTAAGATCCAATGGACATATGTCCGCGTGGGTTCGAACCCCACTCCTGGTA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna86 (145503859-145503930) Length: 72 bp Type: Gln Anticodon: TTG at 34-36 (145503892-145503894) Score: 58.1 HMM Sc=40.00 Sec struct Sc=18.10 * | * | * | * | * | * | * | Seq: GGTCCCATGGTGTAATGGTtAGCACTCTGGGCTTTGAATCCAGCAaTCCGAGTTCGAATCTTGGTGGGACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna87 (158824720-158824648) Length: 73 bp Type: Val Anticodon: AAC at 34-36 (158824687-158824685) Score: 33.8 Filtered: HMM Sc=25.70 Sec struct Sc=8.10 * | * | * | * | * | * | * | Seq: GTTTCCATAGCGTAGTAATtATCAAGTTTGCCTAACACGCGAAATGtCCCCGGTTCAAAACCGGGCGGAAACA Str: >>>>>>.....>..........<...>>>>>.......<<<<<.....>>>>>.......<<<<<.<<<<<<. chr6.trna89 (126101464-126101393) Length: 72 bp Type: Glu Anticodon: CTC at 34-36 (126101431-126101429) Score: 73.2 HMM Sc=49.00 Sec struct Sc=24.20 * | * | * | * | * | * | * | Seq: TCCCTGGTGGTCTAGTGGTtAGGATTCGGCGCTCTCACCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna90 (79668082-79668010) Length: 73 bp Type: Phe Anticodon: GAA at 34-36 (79668049-79668047) Score: 45.5 Filtered, Possible pseudogene: HMM Sc=45.40 Sec struct Sc=0.10 * | * | * | * | * | * | * | Seq: GCCAAAATAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGtCTCTGGTTTGATCCTGGGTTTCAGAA Str: .>..>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<..<.. chr6.trna91 (58196695-58196623) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (58196662-58196660) Score: 53.1 HMM Sc=35.40 Sec struct Sc=17.70 * | * | * | * | * | * | * | Seq: GGGGAATTAGCCCAAGTGGTAGAGCGCTTGCTTAGCATGCAAGAGGtAGTGGGATCGATGCCCACATTCTCCA Str: >>>>>>>..>>.>........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna92 (58187516-58187444) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (58187483-58187481) Score: 46.4 Filtered: HMM Sc=32.30 Sec struct Sc=14.10 * | * | * | * | * | * | * | Seq: GGGGAATTAGCGCAAGTGGTAGAGTGCTTGCTTAGCATGCAAGAGGtAGTGGGATCGATGCCCACATTCTCCA Str: >>>>>>>..>>.>........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna93 (58182751-58182679) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (58182718-58182716) Score: 60.0 HMM Sc=36.00 Sec struct Sc=24.00 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAAGTGGTAGAGCGCTTGCTTAGCATGCAAGAGGtAGTGGGATCGATGCCCACATTCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna94 (58168564-58168492) Length: 73 bp Type: Met Anticodon: CAT at 34-36 (58168531-58168529) Score: 66.2 HMM Sc=46.20 Sec struct Sc=20.00 * | * | * | * | * | * | * | Seq: GCCCTCTTAGTGCAGCTGGCAGCGCGTCAGTTTCATAATCTGAAAGtCCTGAGTTCAAGCCTCAGAGAGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna95 (58164700-58164628) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (58164667-58164665) Score: 58.7 HMM Sc=34.60 Sec struct Sc=24.10 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAAGCGGTAGAGCGCTTGCTTAGCATGCAAGAGGtAGTGGGATCGATGCCCACATTCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna96 (58156522-58156450) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (58156489-58156487) Score: 26.3 Filtered: HMM Sc=15.20 Sec struct Sc=11.10 * | * | * | * | * | * | * | Seq: GAAGAAGTAGCTCAAGTGGTCGAGTGCTCGCTTAGCATGTGAGAGGtAGTGGGATTGATGCCCACATTCTCCA Str: >.>>>>...>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<.<<<<.<. chr6.trna97 (58142661-58142589) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (58142628-58142626) Score: 49.5 Filtered: HMM Sc=32.50 Sec struct Sc=17.00 * | * | * | * | * | * | * | Seq: GGGGGATTAGCTCAAGCGGTAGAGCGCCTGCTTAGCATGCAAGAGGtAGCAGGATCGATGCCTGCATTCTCCA Str: >>>>>>>..>>>>........<<<<.>.>>>.......<<<.<.....>>>>>.......<<<<<<<<<<<<. chr6.trna98 (58141949-58141877) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (58141916-58141914) Score: 31.6 Filtered: HMM Sc=22.70 Sec struct Sc=8.90 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAAGCGGTAGAGCGCTCCCTTAGCATGCGAGAGGtAGCGGGATCGACGCCCCCATTCTCTA Str: >>>>>>>..>>>>........<<<<.>>>.>.......<.<<<.....>.>>>.......<<<.<<<<<<<<. chr6.trna99 (28949521-28949449) Length: 73 bp Type: Phe Anticodon: GAA at 34-36 (28949488-28949486) Score: 88.9 HMM Sc=68.40 Sec struct Sc=20.50 * | * | * | * | * | * | * | Seq: GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGtCCCTGGTTCGATCCCGGGTTTCGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna100 (28921114-28921042) Length: 73 bp Type: Met Anticodon: CAT at 34-36 (28921081-28921079) Score: 77.4 HMM Sc=55.00 Sec struct Sc=22.40 * | * | * | * | * | * | * | Seq: GCCTCCTTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGtCCTGAGTTCGAACCTCAGAGGGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna101 (28911480-28911399) Length: 82 bp Type: Leu Anticodon: AAG at 35-37 (28911446-28911444) Score: 74.8 HMM Sc=55.10 Sec struct Sc=19.70 * | * | * | * | * | * | * | * | Seq: GGTAGCGTGGCCGAGCGGTctAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGgCGTGGGTTCGAATCCCACCGCTGCCA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<. chr6.trna102 (28909449-28909378) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (28909416-28909414) Score: 71.5 HMM Sc=44.00 Sec struct Sc=27.50 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTtAGCACTCTGGACTCTGAATCCAGCGaTCCGAGTTCAAATCTCGGTGGAACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna103 (28864105-28864000) Length: 106 bp Type: Leu Anticodon: CAA at 35-37 (28864071-28864069) Score: 77.2 Possible intron: 39-61 (28864067-28864045) HMM Sc=53.10 Sec struct Sc=24.10 * | * | * | * | * | * | * | * | * | * | * Seq: GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGctaagcttcctccgcggtggggaTTCTGGTCTCCAATGGAGGCGTGGGTTCGAATCCCACTTCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>..............................<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna104 (28831533-28831462) Length: 72 bp Type: Ala Anticodon: AGC at 33-35 (28831501-28831499) Score: 84.7 HMM Sc=61.10 Sec struct Sc=23.60 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAGGcCCCGGGTTCAATCCCCGGCACCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna105 (28806292-28806221) Length: 72 bp Type: Ala Anticodon: AGC at 33-35 (28806260-28806258) Score: 84.7 HMM Sc=61.10 Sec struct Sc=23.60 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAGGcCCCGGGTTCAATCCCCGGCACCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna106 (28795261-28795190) Length: 72 bp Type: Asp Anticodon: ATC at 33-35 (28795229-28795227) Score: 34.9 Filtered: HMM Sc=19.20 Sec struct Sc=15.70 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGTGGTAGAGAGTGTACTTATCATGCACGAGGtCTTGGGCTGATTCCCCAGTACCTCCA Str: >>>>>>>...>>>.......<<<..>>>.>.......<.<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna107 (28791166-28791093) Length: 74 bp Type: Phe Anticodon: GAA at 34-36 (28791133-28791131) Score: 75.5 HMM Sc=56.80 Sec struct Sc=18.70 * | * | * | * | * | * | * | Seq: GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACCGAAGATCTtAAAGGtCCCTGGTTCAATCCCGGGTTTCGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<.<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna108 (28785083-28785012) Length: 72 bp Type: Ala Anticodon: TGC at 33-35 (28785051-28785049) Score: 75.3 HMM Sc=47.10 Sec struct Sc=28.20 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGcCTCGGGTTCGATCCCCGACACCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna109 (28779920-28779849) Length: 72 bp Type: Ala Anticodon: AGC at 33-35 (28779888-28779886) Score: 74.1 HMM Sc=52.30 Sec struct Sc=21.80 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGCGGTAGAGCGCGTGCTTAGCATGCACGAGGtCCTGGGTTCAATCCCCAATACCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<<<<<. chr6.trna110 (28775682-28775610) Length: 73 bp Type: Phe Anticodon: GAA at 34-36 (28775649-28775647) Score: 88.3 HMM Sc=69.20 Sec struct Sc=19.10 * | * | * | * | * | * | * | Seq: GCCGAGATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGtCCCTGGTTCAATCCCGGGTTTCGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna111 (28770647-28770577) Length: 71 bp Type: Ala Anticodon: TGC at 33-35 (28770615-28770613) Score: 60.0 HMM Sc=47.40 Sec struct Sc=12.60 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGcCTCGGTTCGATCcCCGACACCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>........<<<<<<<<<<<. chr6.trna112 (28763812-28763741) Length: 72 bp Type: Ala Anticodon: AGC at 33-35 (28763780-28763778) Score: 84.9 HMM Sc=60.60 Sec struct Sc=24.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGTGGTAGAGCGCGTGCTTAGCATGCACGAGGtCCTGGGTTCGATCCCCAGTACCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna113 (28758571-28758499) Length: 73 bp Type: Phe Anticodon: GAA at 34-36 (28758538-28758536) Score: 88.9 HMM Sc=68.40 Sec struct Sc=20.50 * | * | * | * | * | * | * | Seq: GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGtCCCTGGTTCGATCCCGGGTTTCGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna114 (28757618-28757547) Length: 72 bp Type: Ala Anticodon: TGC at 33-35 (28757586-28757584) Score: 80.5 HMM Sc=56.50 Sec struct Sc=24.00 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGtCCCGGGTTCGATCCCCGGCACCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna115 (28746615-28746544) Length: 72 bp Type: Ala Anticodon: AGC at 33-35 (28746583-28746581) Score: 22.7 Filtered, Possible pseudogene: HMM Sc=24.10 Sec struct Sc=-1.40 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGACAGAGCACGTGGTTAGCATGCGTGAGGtCCTGCGTTCAACTTCCAGTATTTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<.....>>>.>.......<.<<<<<<<<<<. chr6.trna116 (28731447-28731374) Length: 74 bp Type: Phe Anticodon: GAA at 34-36 (28731414-28731412) Score: 58.8 HMM Sc=42.80 Sec struct Sc=16.00 * | * | * | * | * | * | * | Seq: GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTtAAAGTtCCCTGGTTCAACCCTGGGTTTCAGCC Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<.<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna117 (28726212-28726141) Length: 72 bp Type: Ala Anticodon: TGC at 33-35 (28726180-28726178) Score: 74.2 HMM Sc=54.90 Sec struct Sc=19.30 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCACATGCTTTGCATGTGTGAGGcCCCGGGTTCGATCCCCGGCACCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna118 (28710801-28710729) Length: 73 bp Type: Arg Anticodon: CCG at 34-36 (28710768-28710766) Score: 67.0 HMM Sc=49.40 Sec struct Sc=17.60 * | * | * | * | * | * | * | Seq: GGCCGCGTGGCCTAATGGAtAAGGCGTCTGATTCCGGATCAGAAGAtTGAGGGTTCGAGTCCCTTCGTGGTCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna119 (28703277-28703206) Length: 72 bp Type: Val Anticodon: AAC at 33-35 (28703245-28703243) Score: 69.9 HMM Sc=58.00 Sec struct Sc=11.90 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCGTATGCTTAACATTCATGAGGcTCTGGGTTCGATCCCCAGCACTTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna120 (28694927-28694855) Length: 73 bp Type: Phe Anticodon: GAA at 34-36 (28694894-28694892) Score: 33.3 Filtered, Possible pseudogene: HMM Sc=46.90 Sec struct Sc=-13.60 * | * | * | * | * | * | * | Seq: GCTGAGATAGCTCGGTTGGGAGGGCATCAGCCTGAAGATCTAAAGGaGACTGGTTCAATTCTGGGTTTTGGCA Str: >>>>>>>..>>>>........<<<<.>.>>.........<<.<......>>>>.......<<<<.<<<<<<<. chr6.trna121 (28663780-28663709) Length: 72 bp Type: Ala Anticodon: CGC at 33-35 (28663748-28663746) Score: 52.8 Filtered: HMM Sc=44.70 Sec struct Sc=8.10 * | * | * | * | * | * | * | Seq: GGGGGTGTAGATCAGTGGTAGAGCGCATGCTTCGCATGTACGAGGtCCCTGGTTCAATCCCTGGTACCTCCA Str: >>>>>>>..>.>>.......<<.<.>.>>>.......<<<.<.....>>.>>.......<<.<<<<<<<<<. chr6.trna122 (28661060-28660987) Length: 74 bp Type: Lys Anticodon: TTT at 35-37 (28661026-28661024) Score: 46.0 Filtered, Possible pseudogene: HMM Sc=45.90 Sec struct Sc=0.10 * | * | * | * | * | * | * | Seq: GCCTGGGTAGCTCAGTCGGTAGAGCtATCAGACTTTTAGCCTGAGGAtTCAGGGTTCAATCCCTTGCTGGGGCG Str: >>>>.>>..>>>>........<<<<..>>>>.........<<<<.....>>>>>.......<<<<<<<.<<<<. chr6.trna123 (28641684-28641613) Length: 72 bp Type: Ala Anticodon: CGC at 33-35 (28641652-28641650) Score: 79.7 HMM Sc=55.30 Sec struct Sc=24.40 * | * | * | * | * | * | * | Seq: GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTCGCATGTATGAGGcCCCGGGTTCGATCCCCGGCATCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna124 (28626085-28626014) Length: 72 bp Type: Ala Anticodon: AGC at 33-35 (28626053-28626051) Score: 76.1 HMM Sc=58.70 Sec struct Sc=17.40 * | * | * | * | * | * | * | Seq: GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTAGCATGCATGAGGtCCCGGGTTCGATCCCCAGCATCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<. chr6.trna125 (28616057-28615984) Length: 74 bp Type: Thr Anticodon: CGT at 35-37 (28616023-28616021) Score: 77.1 HMM Sc=58.30 Sec struct Sc=18.80 * | * | * | * | * | * | * | Seq: GGCTCTGTGGCTTAGTTGGCtAAAGCGCCTGTCTCGTAAACAGGAGAtCCTGGGTTCGAATCCCAGCGGGGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna126 (28601931-28601859) Length: 73 bp Type: Ala Anticodon: TGC at 34-36 (28601898-28601896) Score: 38.1 Filtered, Possible pseudogene: HMM Sc=40.90 Sec struct Sc=-2.80 * | * | * | * | * | * | * | Seq: GGtGGATGTAGTTTAGTGGTAGAACGCGCGCTTTGCATGTATGAGGtCCCGGTTTCGATCCCTGGCGTTTCCA Str: >>.>>>>>..>>>>.......<<<<.>>.>>.......<<.<<.....>>>>.........<<<<<<<<<<<. chr6.trna127 (28565198-28565117) Length: 82 bp Type: Ser Anticodon: GCT at 34-36 (28565165-28565163) Score: 88.4 HMM Sc=61.60 Sec struct Sc=26.80 * | * | * | * | * | * | * | * | Seq: GACGAGGTGGCCGAGTGGTtAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATCCCATCCTCGTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna128 (28510963-28510891) Length: 73 bp Type: Arg Anticodon: TCG at 34-36 (28510930-28510928) Score: 65.5 HMM Sc=44.80 Sec struct Sc=20.70 * | * | * | * | * | * | * | Seq: GACCACGTGGCCTAATGGAtAAGGCGTCTGACTTCGGATCAGAAGAtTGAGGGTTCGAATCCCTTCGTGGTTG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna129 (28456843-28456770) Length: 74 bp Type: Thr Anticodon: CGT at 35-37 (28456809-28456807) Score: 78.4 HMM Sc=59.30 Sec struct Sc=19.10 * | * | * | * | * | * | * | Seq: GGCTCTATGGCTTAGTTGGTtAAAGCGCCTGTCTCGTAAACAGGAGAtCCTGGGTTCGACTCCCAGTGGGGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna130 (28446481-28446400) Length: 82 bp Type: Leu Anticodon: AAG at 35-37 (28446447-28446445) Score: 64.4 HMM Sc=50.40 Sec struct Sc=14.00 * | * | * | * | * | * | * | * | Seq: GGTAGCGTGGCCGAGTGGTctAAGACGCTGGATTAAGGCTCCAGTCTCTTCGGGGgCGTGGGTTTGAATCCCACCGCTGCCA Str: >>>>>>>..>.>...........<.<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<. chr6.trna131 (28442402-28442329) Length: 74 bp Type: Thr Anticodon: TGT at 35-37 (28442368-28442366) Score: 83.3 HMM Sc=59.90 Sec struct Sc=23.40 * | * | * | * | * | * | * | Seq: GGCTCTATGGCTTAGTTGGTtAAAGCGCCTGTCTTGTAAACAGGAGAtCCTGGGTTCGAATCCCAGTAGAGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna132 (27870756-27870686) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (27870724-27870722) Score: 81.0 HMM Sc=59.90 Sec struct Sc=21.10 * | * | * | * | * | * | * | Seq: GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna133 (27870342-27870271) Length: 72 bp Type: iMet Anticodon: CAT at 33-35 (27870310-27870308) Score: 60.4 HMM Sc=30.80 Sec struct Sc=29.60 * | * | * | * | * | * | * | Seq: AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGtCGATGGATCGAAACCATCCTCTGCTA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna134 (27763711-27763640) Length: 72 bp Type: Gln Anticodon: TTG at 34-36 (27763678-27763676) Score: 66.9 HMM Sc=47.20 Sec struct Sc=19.70 * | * | * | * | * | * | * | Seq: GGCCCCATGGTGTAATGGTtAGCACTCTGGACTTTGAATCCAGCGaTCCGAGTTCAAATCTCGGTGGGACCT Str: >>.>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<.<<. chr6.trna135 (27759206-27759135) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (27759173-27759171) Score: 64.7 HMM Sc=45.00 Sec struct Sc=19.70 * | * | * | * | * | * | * | Seq: GGCCCCATGGTGTAATGGTcAGCACTCTGGACTCTGAATCCAGCGaTCCGAGTTCAAATCTCGGTGGGACCC Str: >>.>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<.<<. chr6.trna136 (27721251-27721179) Length: 73 bp Type: Val Anticodon: AAC at 34-36 (27721218-27721216) Score: 79.4 HMM Sc=49.30 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTAACACGCGAAAGGtCCCCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna137 (27696399-27696327) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (27696366-27696364) Score: 49.0 Filtered: HMM Sc=30.40 Sec struct Sc=18.60 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATTATGTTCGCCTCACACGCGAAAAGtCCCCGGTTCGAAATCAGGCGGGAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<. chr6.trna138 (27688980-27688898) Length: 83 bp Type: Leu Anticodon: TAA at 34-36 (27688947-27688945) Score: 90.8 HMM Sc=62.10 Sec struct Sc=28.70 * | * | * | * | * | * | * | * | Seq: ACCGGGATGGCCGAGTGGTtAAGGCGTTGGACTTAAGATCCAATGGGCTGGTGCCCGCGTGGGTTCGAACCCCACTCTCGGTA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna139 (27652547-27652474) Length: 74 bp Type: Thr Anticodon: AGT at 35-37 (27652513-27652511) Score: 81.4 HMM Sc=60.50 Sec struct Sc=20.90 * | * | * | * | * | * | * | Seq: GGCTCCGTGGCTTAGCTGGTtAAAGCGCCTGTCTAGTAAACAGGAGAtCCTGGGTTCGAATCCCAGCGGGGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna140 (27648957-27648885) Length: 73 bp Type: Val Anticodon: AAC at 34-36 (27648924-27648922) Score: 69.2 HMM Sc=47.30 Sec struct Sc=21.90 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTAACACGCGAAAGGtCCGCGGTTCGAAACCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<. chr6.trna141 (27640310-27640229) Length: 82 bp Type: Ser Anticodon: CGA at 34-36 (27640277-27640275) Score: 94.6 HMM Sc=62.60 Sec struct Sc=32.00 * | * | * | * | * | * | * | * | Seq: GCTGTGATGGCCGAGTGGTtAAGGTGTTGGACTCGAAATCCAATGGGGGTTCCCCGCGCAGGTTCAAATCCTGCTCACAGCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<..>>>>..<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna142 (27638416-27638344) Length: 73 bp Type: Arg Anticodon: ACG at 34-36 (27638383-27638381) Score: 64.2 HMM Sc=45.60 Sec struct Sc=18.60 * | * | * | * | * | * | * | Seq: GGGCCAGTGGCGCAATGGAtAACGCGTCTGACTACGGATCAGAAGAtTCTAGGTTCGACTCCTGGCTGGCTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna143 (27618779-27618707) Length: 73 bp Type: Val Anticodon: AAC at 34-36 (27618746-27618744) Score: 72.8 HMM Sc=42.70 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGTGGTtATCACGTTCGCCTAACACGCGAAAGGtCCCTGGATCAAAACCAGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna144 (27573524-27573417) Length: 108 bp Type: Leu Anticodon: CAA at 35-37 (27573490-27573488) Score: 78.0 Possible intron: 39-62 (27573486-27573463) HMM Sc=51.40 Sec struct Sc=26.60 * | * | * | * | * | * | * | * | * | * | * Seq: GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGcttactgcttcctgtgttcgggtcTTCTGGTCTCCGTATGGAGGCGTGGGTTCGAATCCCACTTCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>...............................<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna145 (27570454-27570348) Length: 107 bp Type: Leu Anticodon: CAA at 35-37 (27570420-27570418) Score: 77.3 Possible intron: 39-61 (27570416-27570394) HMM Sc=51.00 Sec struct Sc=26.30 * | * | * | * | * | * | * | * | * | * | * Seq: GTCAGGATGGCCGAGTGGTctAAGGCGCCAGACTCAAGttgctacttcccaggtttggggcTTCTGGTCTCCGCATGGAGGCGTGGGTTCGAATCCCACTTCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>..............................<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna146 (27560671-27560600) Length: 72 bp Type: iMet Anticodon: CAT at 33-35 (27560639-27560637) Score: 60.4 HMM Sc=30.80 Sec struct Sc=29.60 * | * | * | * | * | * | * | Seq: AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGtCGATGGATCGAAACCATCCTCTGCTA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna147 (27559665-27559593) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (27559632-27559630) Score: 86.8 HMM Sc=65.70 Sec struct Sc=21.10 * | * | * | * | * | * | * | Seq: GCCTGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGtCCAGGGTTCAAGTCCCTGTTCAGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna148 (27551307-27551236) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (27551274-27551272) Score: 58.2 HMM Sc=35.70 Sec struct Sc=22.50 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTgAGTGTCCCCGTCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna149 (27521273-27521192) Length: 82 bp Type: Ser Anticodon: AGA at 34-36 (27521240-27521238) Score: 78.8 HMM Sc=53.30 Sec struct Sc=25.50 * | * | * | * | * | * | * | * | Seq: GTAGTCGTGGCCGAGTGGTtAAGGTGATGGACTAGAAACCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACG Str: >>>>>>>..>>>..........<<<.>>>>.........<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna150 (27515602-27515531) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (27515569-27515567) Score: 70.9 HMM Sc=43.40 Sec struct Sc=27.50 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTtAGCACTCTGGACTCTGAATCCAGCGaTCCGAGTTCAAGTCTCGGTGGAACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr6.trna151 (27509635-27509554) Length: 82 bp Type: Ser Anticodon: AGA at 34-36 (27509602-27509600) Score: 90.3 HMM Sc=57.50 Sec struct Sc=32.80 * | * | * | * | * | * | * | * | Seq: GTAGTCGTGGCCGAGTGGTtAAGGCGATGGACTAGAAATCCATTGGGGTTTCCCCGCGCAGGTTCGAATCCTGCCGACTACG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna152 (27473688-27473607) Length: 82 bp Type: Ser Anticodon: TGA at 34-36 (27473655-27473653) Score: 84.0 HMM Sc=56.20 Sec struct Sc=27.80 * | * | * | * | * | * | * | * | Seq: GTAGTCGTGGCCGAGTGGTtAAGGCGATGGACTTGAAATCCATTGGGGTTTCCCCGCGCAGGTTCGAATCCTGTCGGCTACG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna153 (27302841-27302769) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (27302808-27302806) Score: 85.2 HMM Sc=66.20 Sec struct Sc=19.00 * | * | * | * | * | * | * | Seq: GCCTGGGTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGtCCAGGGTTCAAGTCCCTGTCCAGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna154 (27300835-27300764) Length: 72 bp Type: iMet Anticodon: CAT at 33-35 (27300803-27300801) Score: 60.4 HMM Sc=30.80 Sec struct Sc=29.60 * | * | * | * | * | * | * | Seq: AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGtCGATGGATCGAAACCATCCTCTGCTA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna155 (27271639-27271568) Length: 72 bp Type: Thr Anticodon: CGT at 33-35 (27271607-27271605) Score: 37.0 Filtered: HMM Sc=30.10 Sec struct Sc=6.90 * | * | * | * | * | * | * | Seq: GGCAGAGTGGTGCAGCGGAAGCGTGCTGGGCCCGTAACCCAGAGGtCAATGGATCGAAGCCATCCTTGGCTA Str: >>>.>>>..>>>>.......<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<.<<<. chr6.trna156 (27248121-27248049) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (27248088-27248086) Score: 80.5 HMM Sc=51.70 Sec struct Sc=28.80 * | * | * | * | * | * | * | Seq: GCTTCTGTAGTGTAGTGGTtATCACGTTCGCCTCACACGCGAAAGGtCCCCGGTTCGAAACCGGGCAGAAGCA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna157 (27243063-27242990) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (27243029-27243027) Score: 84.9 HMM Sc=64.10 Sec struct Sc=20.80 * | * | * | * | * | * | * | Seq: GGCTGGTTAGCTCAGTTGGTtAGAGCGTGGTGCTAATAACGCCAAGGtCGCGGGTTCGATCCCCGTACTGGCCA Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna158 (27205423-27205350) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (27205389-27205387) Score: 81.2 HMM Sc=64.80 Sec struct Sc=16.40 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTtAGAGCGTGGTGCTAATAACGCCAAGGtCGCGGGTTCGATCCCCGTACGGGCCA Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. chr6.trna159 (27198416-27198334) Length: 83 bp Type: Leu Anticodon: TAA at 34-36 (27198383-27198381) Score: 83.8 HMM Sc=58.90 Sec struct Sc=24.90 * | * | * | * | * | * | * | * | Seq: ACCGGGATGGCTGAGTGGTtAAGGCGTTGGACTTAAGATCCAATGGACAGGTGTCCGCGTGGGTTCGAGCCCCACTCCCGGTA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>>..<<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna160 (27181695-27181623) Length: 73 bp Type: Arg Anticodon: ACG at 34-36 (27181662-27181660) Score: 64.2 HMM Sc=45.60 Sec struct Sc=18.60 * | * | * | * | * | * | * | Seq: GGGCCAGTGGCGCAATGGAtAACGCGTCTGACTACGGATCAGAAGAtTCTAGGTTCGACTCCTGGCTGGCTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna161 (27173939-27173867) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (27173906-27173904) Score: 63.1 HMM Sc=42.50 Sec struct Sc=20.60 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGGAGTGGTtATCACGTTCGCCTCACACGCGAAAGGtCCCCGGTTTGAAACCAGGCGGAAACA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<. chr6.trna162 (27145067-27144994) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (27145033-27145031) Score: 81.2 HMM Sc=64.80 Sec struct Sc=16.40 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTtAGAGCGTGGTGCTAATAACGCCAAGGtCGCGGGTTCGATCCCCGTACGGGCCA Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. chr6.trna163 (26796078-26796006) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26796045-26796043) Score: 60.0 HMM Sc=36.00 Sec struct Sc=24.00 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAAGTGGTAGAGCGCTTGCTTAGCATGCAAGAGGtAGTGGGATCGATGCCCACATTCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna164 (26788228-26788156) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26788195-26788193) Score: 24.8 Filtered: HMM Sc=14.00 Sec struct Sc=10.80 * | * | * | * | * | * | * | Seq: GAAGAAGTAGCTCAAGTGGTGGAGTGCTCGCTTAGCATGTGAGAGGtAGTGGGATTGATGCCCACATTCTCCA Str: >.>>>>...>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<.<<<<.<. chr6.trna165 (26773843-26773771) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26773810-26773808) Score: 47.3 Filtered: HMM Sc=29.20 Sec struct Sc=18.10 * | * | * | * | * | * | * | Seq: GGGGAATTGGCTCAAGCGGTAGAGCGCTTGCTTAGCATGCAAGAGGtAGCAGGATCGACGCCTGCACTCTCCA Str: >>>>>.>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<<<<<. chr6.trna166 (26771362-26771290) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26771329-26771327) Score: 58.3 HMM Sc=34.20 Sec struct Sc=24.10 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAGGCGGTAGAGCGCTCGCTTAGCATGCGAGAGGtAGCGGGATCGACGCCCGCATTCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna167 (26758622-26758550) Length: 73 bp Type: Met Anticodon: CAT at 34-36 (26758589-26758587) Score: 80.2 HMM Sc=56.30 Sec struct Sc=23.90 * | * | * | * | * | * | * | Seq: GCCCTCTTAGCGCAGCGGGcAGCGCGTCAGTCTCATAATCTGAAGGtCCTGAGTTCGAGCCTCAGAGAGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna168 (26745328-26745255) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (26745294-26745292) Score: 81.6 HMM Sc=63.70 Sec struct Sc=17.90 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTtAGAGCGTGGTGCTAATAACGCTAAGGtCGCGGGTTCGATCCCCGTACTGGCCA Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna169 (26735646-26735574) Length: 73 bp Type: Met Anticodon: CAT at 34-36 (26735613-26735611) Score: 80.2 HMM Sc=56.30 Sec struct Sc=23.90 * | * | * | * | * | * | * | Seq: GCCCTCTTAGCGCAGCGGGcAGCGCGTCAGTCTCATAATCTGAAGGtCCTGAGTTCGAGCCTCAGAGAGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna170 (26721294-26721221) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (26721260-26721258) Score: 81.2 HMM Sc=64.80 Sec struct Sc=16.40 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTcAGAGCGTGGTGCTAATAACGCCAAGGtCGCGGGTTCGATCCCCGTACGGGCCA Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. chr6.trna171 (26572164-26572092) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (26572131-26572129) Score: 58.9 HMM Sc=34.90 Sec struct Sc=24.00 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtAGCGGGATCGATGCCCGCATTCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna172 (26533218-26533145) Length: 74 bp Type: Thr Anticodon: AGT at 35-37 (26533184-26533182) Score: 81.4 HMM Sc=60.50 Sec struct Sc=20.90 * | * | * | * | * | * | * | Seq: GGCTCCGTGGCTTAGCTGGTtAAAGCGCCTGTCTAGTAAACAGGAGAtCCTGGGTTCGAATCCCAGCGGGGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna173 (26331743-26331672) Length: 72 bp Type: Trp Anticodon: CCA at 33-35 (26331711-26331709) Score: 73.3 HMM Sc=50.60 Sec struct Sc=22.70 * | * | * | * | * | * | * | Seq: GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCAAATCACGTCGGGGTCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna174 (26330600-26330529) Length: 72 bp Type: iMet Anticodon: CAT at 33-35 (26330568-26330566) Score: 60.4 HMM Sc=30.80 Sec struct Sc=29.60 * | * | * | * | * | * | * | Seq: AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGtCGATGGATCGAAACCATCCTCTGCTA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna175 (26319401-26319330) Length: 72 bp Type: Trp Anticodon: CCA at 33-35 (26319369-26319367) Score: 73.3 HMM Sc=50.60 Sec struct Sc=22.70 * | * | * | * | * | * | * | Seq: GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCAAATCACGTCGGGGTCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna176 (26313423-26313352) Length: 72 bp Type: iMet Anticodon: CAT at 33-35 (26313391-26313389) Score: 60.4 HMM Sc=30.80 Sec struct Sc=29.60 * | * | * | * | * | * | * | Seq: AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGtCGATGGATCGAAACCATCCTCTGCTA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr6.trna177 (26312905-26312824) Length: 82 bp Type: Ser Anticodon: TGA at 34-36 (26312872-26312870) Score: 89.7 HMM Sc=56.90 Sec struct Sc=32.80 * | * | * | * | * | * | * | * | Seq: GTAGTCGTGGCCGAGTGGTtAAGGCGATGGACTTGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr6.trna178 (26312046-26311975) Length: 72 bp Type: Gln Anticodon: TTG at 34-36 (26312013-26312011) Score: 66.9 HMM Sc=47.20 Sec struct Sc=19.70 * | * | * | * | * | * | * | Seq: GGCCCCATGGTGTAATGGTtAGCACTCTGGACTTTGAATCCAGCGaTCCGAGTTCAAATCTCGGTGGGACCT Str: >>.>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<.<<. chr6.trna179 (26311495-26311424) Length: 72 bp Type: Gln Anticodon: TTG at 34-36 (26311462-26311460) Score: 66.9 HMM Sc=47.20 Sec struct Sc=19.70 * | * | * | * | * | * | * | Seq: GGCCCCATGGTGTAATGGTtAGCACTCTGGACTTTGAATCCAGCGaTCCGAGTTCAAATCTCGGTGGGACCT Str: >>.>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<.<<. chr6.trna180 (26305801-26305718) Length: 84 bp Type: Ser Anticodon: GCT at 36-38 (26305766-26305764) Score: 71.6 HMM Sc=55.20 Sec struct Sc=16.40 * | * | * | * | * | * | * | * | Seq: GGAGAGGccTGGCCGAGTGGTtAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATCCCATCCTCGTCG Str: >>.>>>>....>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<.<<. chr7.trna1 (12641589-12641672) Length: 84 bp Type: Lys Anticodon: CTT at 42-44 (12641630-12641632) Score: 31.1 Filtered, Possible truncation, pseudogene: HMM Sc=31.00 Sec struct Sc=0.10 * | * | * | * | * | * | * | * | Seq: GtttTGTTTCttattgggggaaGTCGGTAGAACATGAGATTCTTAATCTCAGGGtCCTGGGTTTAAGCCCCAGgttGGGAGCCA Str: >......>>>...................<<<..>>>>>.......<<<<<.....>>>>>.......<<<<<.........<. chr7.trna3 (99067307-99067378) Length: 72 bp Type: Trp Anticodon: CCA at 33-35 (99067339-99067341) Score: 68.8 HMM Sc=46.10 Sec struct Sc=22.70 * | * | * | * | * | * | * | Seq: GACCTCGTGGCGCAACGGCAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCAAATCACGTCGGGGTCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna4 (128423504-128423575) Length: 72 bp Type: Pro Anticodon: AGG at 33-35 (128423536-128423538) Score: 70.2 HMM Sc=43.80 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna5 (139025446-139025518) Length: 73 bp Type: Arg Anticodon: CCT at 34-36 (139025479-139025481) Score: 65.6 HMM Sc=51.50 Sec struct Sc=14.10 * | * | * | * | * | * | * | Seq: GCCCCAGTGGCCTAATGGAtAAGGCATTGGCCTCCTAAGCCAGGGAtTGTGGGTTCGAGTCCCATCTGGGGTG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna8 (149007281-149007352) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149007313-149007315) Score: 84.1 HMM Sc=61.60 Sec struct Sc=22.50 * | * | * | * | * | * | * | Seq: GGGGGCATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCTGGTTCAAATCCAGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna9 (149028220-149028291) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149028252-149028254) Score: 77.2 HMM Sc=56.90 Sec struct Sc=20.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCTGGTTCAAATCCAGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna10 (149243631-149243702) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149243663-149243665) Score: 70.0 HMM Sc=50.50 Sec struct Sc=19.50 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGGTAGAGCACTTGACTGCAGATCAAGAAGtCCTTGGTTCAAATCCAGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna11 (149253802-149253871) Length: 70 bp Type: Cys Anticodon: GCA at 33-35 (149253834-149253836) Score: 64.9 HMM Sc=43.60 Sec struct Sc=21.30 * | * | * | * | * | * | * Seq: GGGCGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCAGTTCAAATCTGGGTGCCCA Str: >>>>..>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<. chr7.trna12 (149255133-149255205) Length: 73 bp Type: Tyr Anticodon: GTA at 34-36 (149255166-149255168) Score: 48.2 Filtered: HMM Sc=39.80 Sec struct Sc=8.40 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGCTAGAGCtTTTTGACTGTAGAGCAAGAGGtCCCTGGTTCAAATCCAGGTTCTCCCT Str: >>>>>.>..>>>>.......<<<<..>>>>.........<<<<.....>>>>>.......<<<<<<.<<<<<. chr7.trna13 (149281816-149281887) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149281848-149281850) Score: 70.5 HMM Sc=52.20 Sec struct Sc=18.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGtCTCTGGTTCAAATCCAGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna14 (149295046-149295117) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149295078-149295080) Score: 65.6 HMM Sc=50.70 Sec struct Sc=14.90 * | * | * | * | * | * | * | Seq: GGGCGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCAGTTCAAATCTGGGTGCCCCCT Str: >>>.>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<. chr7.trna15 (149305467-149305538) Length: 72 bp Type: Ser Anticodon: AGA at 33-35 (149305499-149305501) Score: 58.7 Filtered: HMM Sc=51.30 Sec struct Sc=7.40 * | * | * | * | * | * | * | Seq: GGGTGTATGGCTCAGGGGTAGAGAATTTGACTAGAGATCAAGAGGtCCCTGGTTCAAATCCAGGTGCCCCCT Str: >>>.>>>...>>>.......<<<..>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<<<. chr7.trna16 (149325244-149325326) Length: 83 bp Type: Cys Anticodon: GCA at 29-31 (149325272-149325274) Score: 26.6 Filtered: HMM Sc=19.10 Sec struct Sc=7.50 * | * | * | * | * | * | * | * | Seq: GtATAGCTCAGGGGTAGAGTATTGGACTGCAGATCCAACaGGaCACCAGTTCAAatacagataacccCTCTGGcTTTTCAATT Str: >.>..>>>>.......<<<<.>>>>>.......<<<<<......>>>>>....................<<<<.<<.....<. chr7.trna17 (149332778-149332849) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149332810-149332812) Score: 77.2 HMM Sc=56.90 Sec struct Sc=20.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCTGGTTCAAATCCAGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna18 (149361915-149361986) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149361947-149361949) Score: 60.7 HMM Sc=44.40 Sec struct Sc=16.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCACAGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTCAAATCTGGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna19 (149404760-149404831) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149404792-149404794) Score: 77.2 HMM Sc=56.90 Sec struct Sc=20.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCTGGTTCAAATCCAGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna20 (149388343-149388272) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149388311-149388309) Score: 70.7 HMM Sc=53.60 Sec struct Sc=17.10 * | * | * | * | * | * | * | Seq: GGGGATATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTCAAATCCGGGTGCCCCCC Str: >>>>.>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. chr7.trna21 (149344117-149344046) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149344085-149344083) Score: 72.4 HMM Sc=51.80 Sec struct Sc=20.60 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTTAGGGGTAGAGCATTTGACTGCAGATCAAAAGGtCCCTGGTTCAAATCCAGGTGCCCCTT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna22 (149310227-149310156) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149310195-149310193) Score: 69.2 HMM Sc=49.40 Sec struct Sc=19.80 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGGTAGAGCATTTGACTGCAAATCAAGAGGtCCCTGATTCAAATCCAGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>.........<<<<<<<<<<<. chr7.trna23 (149292376-149292305) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149292344-149292342) Score: 59.1 HMM Sc=44.40 Sec struct Sc=14.70 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCACAGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTCAAATCCGGTTACTCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<<<<<. chr7.trna24 (149286235-149286164) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149286203-149286201) Score: 79.1 HMM Sc=56.40 Sec struct Sc=22.70 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGGTAGAGCACTTGACTGCAGATCAAGAGGtCCCTGGTTCAAATCCAGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna25 (149112300-149112229) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149112268-149112266) Score: 76.9 HMM Sc=57.80 Sec struct Sc=19.10 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTTAGCGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTCAAATCCGGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna26 (149103226-149103155) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149103194-149103192) Score: 34.0 Filtered: HMM Sc=26.70 Sec struct Sc=7.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTGAGGAGTAAACCATTTGGCTGCAGATCAAGTGGtCCCTGGTTCAAATATGGGTGCCCTCT Str: >>>>>>>..>.>.........<.<.>>>>>.......<<<<<.....>>>>.........<<<<<<<<<<<. chr7.trna27 (149074672-149074601) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149074640-149074638) Score: 74.9 HMM Sc=54.70 Sec struct Sc=20.20 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCTGGTTCAAATCCAGGTGCCCCCC Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna28 (149072921-149072850) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149072889-149072887) Score: 71.8 HMM Sc=55.30 Sec struct Sc=16.50 * | * | * | * | * | * | * | Seq: GGGGGTATAGTTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCTGGTTCAAATCCAGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna29 (149053820-149053744) Length: 77 bp Type: Tyr Anticodon: GTA at 33-35 (149053788-149053786) Score: 37.1 Filtered, Possible truncation, pseudogene: HMM Sc=41.40 Sec struct Sc=-4.30 * | * | * | * | * | * | * | * Seq: TCAATTATAGCTCAGTGGTAGAGCATTTAACTGTAGATCAAGAGGtCCCTGGATCAACTCTGGGTGCccccttTAAA Str: >.>..>>..>>>>.......<<<<.>>>.>.......<.<<<.....>>>>>.......<<<<<<<.......<.<. chr7.trna30 (149052837-149052766) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (149052805-149052803) Score: 74.0 HMM Sc=50.60 Sec struct Sc=23.40 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCAGTTCAAATCTGGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr7.trna31 (96770957-96770885) Length: 73 bp Type: Lys Anticodon: CTT at 31-33 (96770927-96770925) Score: 34.5 Filtered, Possible truncation, pseudogene: HMM Sc=33.10 Sec struct Sc=1.40 * | * | * | * | * | * | * | Seq: GGCaGGCGcTAGTCAGTAGAGCATGAGACTCTTAATCTCAGGGtCGTGGGTTCGAGCCCCACatcGGGCGCCA Str: >>>..>>..>........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<.......<<<. chr7.trna32 (66864618-66864547) Length: 72 bp Type: Trp Anticodon: CCA at 33-35 (66864586-66864584) Score: 30.6 Filtered, Possible pseudogene: HMM Sc=34.40 Sec struct Sc=-3.80 * | * | * | * | * | * | * | Seq: GGCCTCATGGTGCAACAGTAGTGTGTCTGACTCCAGATCAGAAGGtTGTATGTTCAAATCACGTAGGGGTCA Str: >>>>>>...>>>>.......<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<.<<<<<<. chr8.trna1 (11770800-11770871) Length: 72 bp Type: Glu Anticodon: CTC at 34-36 (11770833-11770835) Score: 21.9 Filtered: HMM Sc=14.60 Sec struct Sc=7.30 * | * | * | * | * | * | * | Seq: CCCCTGGTGATCTAGTGGTtAGTCTTTGGCGCTCTCACTGCCACTaCCCGGGTTTGATTTCCGGTCAGGGAA Str: .>>>>>>..>..>........<..<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<.. chr8.trna2 (59504798-59504868) Length: 71 bp Type: Glu Anticodon: CTC at 33-35 (59504830-59504832) Score: 22.8 Filtered: HMM Sc=17.60 Sec struct Sc=5.20 * | * | * | * | * | * | * | Seq: TCCTTGATGTCTAGTGGTtAGGATTTGGTGCTCTCACTGCAGCAgCCTGGGTTCATTTCTCAGTCAGGGAA Str: >>>>>>>.>>>>........<<<<.>.>>>.......<<<.<....>>>>>.......<<<<<<<<<<<<. chr8.trna3 (67025602-67025694) Length: 93 bp Type: Tyr Anticodon: GTA at 34-36 (67025635-67025637) Score: 75.3 Possible intron: 38-57 (67025639-67025658) HMM Sc=47.50 Sec struct Sc=27.80 * | * | * | * | * | * | * | * | * | Seq: CCTTCGATAGCTCAGCTGGTAGAGCGGAGGACTGTAGctacttcctcagcaggagacATCCTTAGGtCGCTGGTTCGATTCCGGCTCGAAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>...........................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr8.trna4 (67026223-67026311) Length: 89 bp Type: Tyr Anticodon: GTA at 34-36 (67026256-67026258) Score: 75.5 Possible intron: 38-53 (67026260-67026275) HMM Sc=47.60 Sec struct Sc=27.90 * | * | * | * | * | * | * | * | * Seq: CCTTCGATAGCTCAGCTGGTAGAGCGGAGGACTGTAGgcgcgcgcccgtggccATCCTTAGGtCGCTGGTTCGATTCCGGCTCGAAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr8.trna5 (67026424-67026496) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (67026457-67026459) Score: 59.7 HMM Sc=36.10 Sec struct Sc=23.60 * | * | * | * | * | * | * | Seq: GGGGGATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGtAGCGGGATCGATGCCCGCATCCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr8.trna6 (99153462-99153530) Length: 69 bp Type: Undet Anticodon: NNN at 0-0 (0-0) Score: 26.7 Filtered: HMM Sc=11.30 Sec struct Sc=15.40 * | * | * | * | * | * | * Seq: GGTCTTGTGCTCAGTGGAAGCCTCTGTCTGAcCATACAGATGaTCCAGGTTCGAATCCTGGCAAGGCCA Str: >>>>>>>.>>>.......<<<.>>>>>........<<<<<....>>>>>.......<<<<<<<<<<<<. chr8.trna7 (124270797-124270722) Length: 76 bp Type: Undet Anticodon: NNN at 0-0 (0-0) Score: 22.4 Filtered, Possible pseudogene: HMM Sc=24.50 Sec struct Sc=-2.10 * | * | * | * | * | * | * | * Seq: GCCAAAATAGCTCAGCTGGGAGAGTATTAgGTTGAAGAtACAAAGTtCCTTGGCTCAATCCAGAGTTTggggGACT Str: >.>.>>>..>>>>........<<<<.>>..>.........<<<.....>>>.>.......<.<<<<<<....<.<. chr8.trna8 (124169542-124169470) Length: 73 bp Type: Met Anticodon: CAT at 34-36 (124169509-124169507) Score: 82.3 HMM Sc=60.90 Sec struct Sc=21.40 * | * | * | * | * | * | * | Seq: GCCTCGTTAGCGCAGTAGGTAGCGCGTCAGTCTCATAATCTGAAGGtCGTGAGTTCGATCCTCACACGGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr8.trna9 (96281966-96281885) Length: 82 bp Type: Ser Anticodon: AGA at 34-36 (96281933-96281931) Score: 89.6 HMM Sc=56.90 Sec struct Sc=32.70 * | * | * | * | * | * | * | * | Seq: GTAGTCGTGGCCGAGTGGTtAAGGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr8.trna10 (89145309-89145236) Length: 74 bp Type: Gln Anticodon: TTG at 35-37 (89145275-89145273) Score: 21.5 Filtered: HMM Sc=12.90 Sec struct Sc=8.60 * | * | * | * | * | * | * | Seq: GGTACAGTGTTAAAGGGGAgaAAAATTGCTGACTTTGAATaCAGTAGaCCTAGGTTTGAATCCTGGCTTTACCA Str: >>>>.>>...>.............<..>>>>>.......<.<<<<....>>>>>.......<<<<<<<.<<<<. chr8.trna11 (67025248-67025176) Length: 73 bp Type: Arg Anticodon: ACG at 34-36 (67025215-67025213) Score: 24.8 Filtered, Possible pseudogene: HMM Sc=8.50 Sec struct Sc=16.30 * | * | * | * | * | * | * | Seq: AGGCCAGTGGCGCAAGGGAtAACGTGTCTGACCACGCATCAGAAGAtTGTAGGTCCAGCTCCTGCCTGGCTCG Str: .>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.. chr8.trna12 (66609619-66609532) Length: 88 bp Type: Tyr Anticodon: GTA at 34-36 (66609586-66609584) Score: 52.0 Possible intron: 38-53 (66609582-66609567) HMM Sc=34.70 Sec struct Sc=17.30 * | * | * | * | * | * | * | * | * Seq: TCTTCAATAGCTCAGCTGGTAGAGCGGAGGACTGTAGgtgcacgcccgtggccATTCTTAGGTGCTGGTTTGATTCCGACTTGGAGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......................<<<<<....>.>>>.......<<<.<<<<<<<<. chr8.trna13 (9939393-9939323) Length: 71 bp Type: Cys Anticodon: GCA at 32-34 (9939362-9939360) Score: 27.2 Filtered: HMM Sc=18.90 Sec struct Sc=8.30 * | * | * | * | * | * | * | Seq: GGGGGTAGAATTCGGGGTAGAACATTTGACTGCAGATCAAGAGGtCCCCGCTTCGAATCTGGGTACCCCCT Str: >>>>>>>...>>>......<<<..>>>>>.......<<<<<.....>>>>.........<<<<<<<<<<<. chr9.trna1 (2959340-2959418) Length: 79 bp Type: Undet Anticodon: NNN at 0-0 (0-0) Score: 20.5 Filtered, Possible pseudogene: HMM Sc=23.00 Sec struct Sc=-2.50 * | * | * | * | * | * | * | * Seq: GTGTGTATAGCACAGTgcagTGGTAGAGCACTTGCTTCTAAgACGAAAGAaCCTGAGTTCAAGTCTCTacTTTCACACT Str: >>>>>.>..>>.>............<.<<..>>>.........<<<........>>>.......<<<....<.<<<<<. chr9.trna2 (19403996-19404070) Length: 75 bp Type: iMet Anticodon: CAT at 36-38 (19404031-19404033) Score: 37.8 Filtered, Possible pseudogene: HMM Sc=9.30 Sec struct Sc=28.50 * | * | * | * | * | * | * | Seq: AGCAGAGTGGTGCAGTGGAAGCATACctaTGGGCCCATAACCCAGAGGtTGATGGATGGAAACCATCCTCTGCTA Str: >>>>>>>..>>>>.......<<<<.>...>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr9.trna4 (112960803-112960875) Length: 73 bp Type: Arg Anticodon: TCG at 34-36 (112960836-112960838) Score: 53.7 HMM Sc=40.80 Sec struct Sc=12.90 * | * | * | * | * | * | * | Seq: GGCCGTGTGGCCTAATGGAtAAGGCGTCTGACTTCGGATCAAAAGAtTGCAGGTTTGAGTTCTGCCACGGTCG Str: >>>>>>>..>>>>........<<<<.>.>>>.......<<<.<.....>>>>>.......<<<<<<<<<<<<. chr9.trna5 (131102445-131102355) Length: 91 bp Type: Arg Anticodon: TCT at 34-36 (131102412-131102410) Score: 70.1 Possible intron: 38-55 (131102408-131102391) HMM Sc=49.80 Sec struct Sc=20.30 * | * | * | * | * | * | * | * | * | Seq: GGCTCTGTGGCGCAATGGAtAGCGCATTGGACTTCTAgctgagcctagtgtggtcATTCAAAGGtTGTGGGTTCGAGTCCCACCAGAGTCG Str: >>>>>>>..>>>>........<<<<.>>>>>.........................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr9.trna6 (123117435-123117353) Length: 83 bp Type: Leu Anticodon: CAG at 35-37 (123117401-123117399) Score: 31.6 Filtered, Possible pseudogene: HMM Sc=28.70 Sec struct Sc=2.90 * | * | * | * | * | * | * | * | Seq: GTCAGGGTGGCTGAGCAGTctGAGGGGCTGCGTTCAGGTCGCAGTCTGCCCTGGAGGCGTGGGTTCGAATCCCACTCCTGAAA Str: .>>>>>>...>>...........<<..>>>>>.......<<<<<.>>.>...<.<<..>>>>>.......<<<<<<<<<<<.. chr9.trna7 (77518061-77517990) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (77518028-77518026) Score: 47.6 Filtered: HMM Sc=24.60 Sec struct Sc=23.00 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATGGTGGTgAGTATCCCTGCCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCAACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>.......<<<<.<<<<<<<. chr9.trna8 (14434009-14433938) Length: 72 bp Type: His Anticodon: GTG at 34-36 (14433976-14433974) Score: 60.1 HMM Sc=29.80 Sec struct Sc=30.30 * | * | * | * | * | * | * | Seq: GCCGTGATCGTATAGTGGTtAGTACTCTGCGTTGTGGCCGCAGCAaCCTCGGTTCGAATCCGAGTCACGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr10.trna1 (22852579-22852651) Length: 73 bp Type: Undet Anticodon: NNN at 0-0 (0-0) Score: 25.9 Filtered: HMM Sc=20.90 Sec struct Sc=5.00 * | * | * | * | * | * | * | Seq: GGCAGTGTGGCATAGTGGTtagaAATGTGCGCTCTGGGGCTGCTGAtCCCAGGCTCAAACCCTGGCGCTGTCA Str: >>>>>>>..>>>>...........<<<<...>.........<......>>>>>.......<<<<<<<<<<<<. chr10.trna2 (69524261-69524342) Length: 82 bp Type: Ser Anticodon: TGA at 34-36 (69524294-69524296) Score: 94.0 HMM Sc=64.50 Sec struct Sc=29.50 * | * | * | * | * | * | * | * | Seq: GCAGCGATGGCCGAGTGGTtAAGGCGTTGGACTTGAAATCCAATGGGGTCTCCCCGCGCAGGTTCGAACCCTGCTCGCTGCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr10.trna3 (64103673-64103600) Length: 74 bp Type: Undet Anticodon: NNN at 0-0 (0-0) Score: 20.5 Filtered, Possible pseudogene: HMM Sc=18.90 Sec struct Sc=1.60 * | * | * | * | * | * | * | Seq: CCCaaTGcTGTAGCTCAGCAGTtAAGGTTTGCCATTTTaCAATGGCAGCCTGGGTTCAATTCCCAGCTTAGGGA Str: >>>..>>..>..>>>..........<<<.>>>>>........<<<<<..>>>>>.......<<<<<<.<<<<<. chr10.trna4 (22518511-22518438) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (22518477-22518475) Score: 80.9 HMM Sc=55.20 Sec struct Sc=25.70 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTCGGCTGTTAACCGAAAGGtTGGTGGTTCGAGCCCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr10.trna6 (5895746-5895674) Length: 73 bp Type: Val Anticodon: TAC at 34-36 (5895713-5895711) Score: 80.7 HMM Sc=52.50 Sec struct Sc=28.20 * | * | * | * | * | * | * | Seq: GGTTCCATAGTGTAGTGGTtATCACATCTGCTTTACACGCAGAAGGtCCTGGGTTCAAGCCCCAGTGGAACCA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr11.trna1 (9296790-9296863) Length: 74 bp Type: Leu Anticodon: CAA at 34-36 (9296823-9296825) Score: 66.5 HMM Sc=48.70 Sec struct Sc=17.80 * | * | * | * | * | * | * | Seq: GCCTCCTTAGTGCAGTAGGTAGCGCATCAGTCTCAAAATCTGAAtGGtCCTGAGTTCAAGCCTCAGAGGGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<......>>>>>.......<<<<<<<<<<<<. chr11.trna2 (51359900-51359972) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (51359933-51359935) Score: 40.3 Filtered, Possible pseudogene: HMM Sc=37.60 Sec struct Sc=2.70 * | * | * | * | * | * | * | Seq: AACCGAATAGCTTAGTTGATGAAGCGTGAGACTCTTAATCTCAGGGtAGTGGGTTCAAGCCCCACATTGGACA Str: ..>>>>...>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<.<<<<... chr11.trna3 (59318767-59318852) Length: 86 bp Type: Arg Anticodon: TCT at 34-36 (59318800-59318802) Score: 70.3 Possible intron: 38-50 (59318804-59318816) HMM Sc=50.00 Sec struct Sc=20.30 * | * | * | * | * | * | * | * | * Seq: GGCTCTGTGGCGCAATGGAtAGCGCATTGGACTTCTAgatagttagagaaATTCAAAGGtTGTGGGTTCGAGTCCCACCAGAGTCG Str: >>>>>>>..>>>>........<<<<.>>>>>....................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr11.trna4 (59319228-59319310) Length: 83 bp Type: Leu Anticodon: TAA at 34-36 (59319261-59319263) Score: 85.0 HMM Sc=53.40 Sec struct Sc=31.60 * | * | * | * | * | * | * | * | Seq: ACCAGAATGGCCGAGTGGTtAAGGCGTTGGACTTAAGATCCAATGGATTCATATCCGCGTGGGTTCGAACCCCACTTCTGGTA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. chr11.trna5 (59323902-59323974) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (59323935-59323937) Score: 84.9 HMM Sc=68.10 Sec struct Sc=16.80 * | * | * | * | * | * | * | Seq: GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGtCCGGGGTTCAAGTCCCTGTTCGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr11.trna6 (66115591-66115672) Length: 82 bp Type: Ser Anticodon: GCT at 34-36 (66115624-66115626) Score: 89.1 HMM Sc=62.10 Sec struct Sc=27.00 * | * | * | * | * | * | * | * | Seq: GACGAGGTGGCCGAGTGGTtAAGGCGATGGACTGCTAATCCATTGTGCTTTGCACGCGTGGGTTCGAATCCCATCCTCGTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr11.trna7 (75946557-75946628) Length: 72 bp Type: Pro Anticodon: AGG at 33-35 (75946589-75946591) Score: 70.2 HMM Sc=43.80 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr11.trna9 (109036038-109036120) Length: 83 bp Type: Ser Anticodon: AGA at 35-37 (109036072-109036074) Score: 34.5 Filtered: HMM Sc=24.80 Sec struct Sc=9.70 * | * | * | * | * | * | * | * | Seq: GTgAGTTGTAGCTGAGTGGTtAAGGCAACGAGCTAGAAATTCGTTGGTTTCTCTCTgTGCAGGTTTGAATCCTGCTAATTATG Str: >>.>>>>>..>>>..........<<<.>>>>>.......<<<<<..>.......<...>>>>>.......<<<<<<<<<<<<. chr11.trna10 (118112087-118112165) Length: 79 bp Type: Arg Anticodon: CCT at 40-42 (118112126-118112128) Score: 21.2 Filtered, Possible pseudogene: HMM Sc=28.10 Sec struct Sc=-6.90 * | * | * | * | * | * | * | * Seq: GGCAGAATGGTGTTGTGATtgAGCACgcagGCCAcGGCTCCTAcACCaGAGGgTCTGGGTTCAAATCCCGGCCCTGTCA Str: >>>>>....>>>>.........<<<<.....>...>>........<<.<.....>>>>>.......<<<<<..<<<<<. chr11.trna11 (122430655-122430727) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (122430688-122430690) Score: 87.7 HMM Sc=66.60 Sec struct Sc=21.10 * | * | * | * | * | * | * | Seq: GCCTGGATAGCTCAGTTGGTAGAGCATCAGACTTTTAATCTGAGGGtCCAGGGTTCAAGTCCCTGTTCAGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr11.trna12 (113433078-113432995) Length: 84 bp Type: Leu Anticodon: TAA at 35-37 (113433044-113433042) Score: 45.5 Filtered: HMM Sc=33.10 Sec struct Sc=12.40 * | * | * | * | * | * | * | * | Seq: ACCAGGATGGCCAAGTAGTtaAAGGCACTGGACTTAAGAGCCAATGGACATATGTCTGTGTGGGTTTGAACCCCACTCCTGGTG Str: >>>>>>>..>>>...........<<<..>>>.........<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<. chr11.trna13 (75946940-75946869) Length: 72 bp Type: Pro Anticodon: TGG at 33-35 (75946908-75946906) Score: 70.5 HMM Sc=44.30 Sec struct Sc=26.20 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGGTTTGGGTCCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr11.trna14 (59333925-59333853) Length: 73 bp Type: Phe Anticodon: GAA at 34-36 (59333892-59333890) Score: 87.9 HMM Sc=67.40 Sec struct Sc=20.50 * | * | * | * | * | * | * | Seq: GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGtCCCTGGTTCAATCCCGGGTTTCGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr11.trna15 (59327880-59327808) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (59327847-59327845) Score: 87.8 HMM Sc=67.30 Sec struct Sc=20.50 * | * | * | * | * | * | * | Seq: GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGtCCAGGGTTCAAGTCCCTGTTCGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr11.trna16 (59325042-59324970) Length: 73 bp Type: Phe Anticodon: GAA at 34-36 (59325009-59325007) Score: 88.9 HMM Sc=68.40 Sec struct Sc=20.50 * | * | * | * | * | * | * | Seq: GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGtCCCTGGTTCGATCCCGGGTTTCGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr11.trna17 (59318532-59318460) Length: 73 bp Type: Val Anticodon: TAC at 34-36 (59318499-59318497) Score: 80.5 HMM Sc=52.30 Sec struct Sc=28.20 * | * | * | * | * | * | * | Seq: GGTTCCATAGTGTAGCGGTtATCACGTCTGCTTTACACGCAGAAGGtCCTGGGTTCGAGCCCCAGTGGAACCA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr11.trna18 (59318174-59318102) Length: 73 bp Type: Val Anticodon: TAC at 34-36 (59318141-59318139) Score: 82.9 HMM Sc=54.70 Sec struct Sc=28.20 * | * | * | * | * | * | * | Seq: GGTTCCATAGTGTAGTGGTtATCACGTCTGCTTTACACGCAGAAGGtCCTGGGTTCGAGCCCCAGTGGAACCA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr11.trna19 (50233950-50233879) Length: 72 bp Type: Ala Anticodon: TGC at 33-35 (50233918-50233916) Score: 48.9 Filtered: HMM Sc=34.40 Sec struct Sc=14.50 * | * | * | * | * | * | * | Seq: GGGGGTGTAGCTCAGTGGTAGAGCGGATGCTTTGCATGTATGAGAcTTTGGGTTGGATCCCCAGCACCTCCA Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<. chr11.trna20 (48087461-48087384) Length: 78 bp Type: Gln Anticodon: CTG at 34-36 (48087428-48087426) Score: 23.2 Filtered, Possible pseudogene: HMM Sc=27.70 Sec struct Sc=-4.50 * | * | * | * | * | * | * | * Seq: GCCAGCATGGTATAGTGGTTAAACACCAgGATTCTGAagTTCAGCTGCCTGGGTTCAAATCCCAGacctcactTGGCA Str: >>>>.....>>.>.......<.<<.....>>.........<<......>>>>>.......<<<<<........<<<<. chr12.trna1 (27843306-27843378) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (27843339-27843341) Score: 50.7 HMM Sc=40.10 Sec struct Sc=10.60 * | * | * | * | * | * | * | Seq: ACCCAGATAGCTCAGTCAGTAGAGCATCAGACTTTTAATCTGAGGGtCCAAGGTTCATGTCCCTTTTTGGGTG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<......>.>>.......<<.<.<<<<<<<. chr12.trna2 (56584148-56584229) Length: 82 bp Type: Ser Anticodon: CGA at 34-36 (56584181-56584183) Score: 89.6 HMM Sc=61.30 Sec struct Sc=28.30 * | * | * | * | * | * | * | * | Seq: GTCACGGTGGCCGAGTGGTtAAGGCGTTGGACTCGAAATCCAATGGGGTTTCCCCGCACAGGTTCGAATCCTGTTCGTGACG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr12.trna3 (74851182-74851254) Length: 73 bp Type: Gln Anticodon: CTG at 34-36 (74851215-74851217) Score: 34.4 Filtered: HMM Sc=28.10 Sec struct Sc=6.30 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTaAGCACCCTGGACTCTGAATCCAGCAaCCAGAGTTCCAGTCTCAGCGtGGACCT Str: >>>>>>...>>>>........<<<<.>>>>>.......<<<<<....>.>>>.......<<<.<.<.<<<<<. chr12.trna4 (96429799-96429870) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (96429832-96429834) Score: 66.5 HMM Sc=35.70 Sec struct Sc=30.80 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTgAGTATCCCCGCCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr12.trna5 (98897281-98897352) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (98897314-98897316) Score: 65.4 HMM Sc=34.70 Sec struct Sc=30.70 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTtAGTATCCCCGCCTGTCACGCGGGAGaCCGGGGTTCAATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr12.trna6 (98898030-98898101) Length: 72 bp Type: Trp Anticodon: CCA at 33-35 (98898062-98898064) Score: 74.3 HMM Sc=51.60 Sec struct Sc=22.70 * | * | * | * | * | * | * | Seq: GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGcTGCGTGTTCGAATCACGTCGGGGTCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr12.trna7 (122860924-122860994) Length: 71 bp Type: Asp Anticodon: GTC at 34-36 (122860957-122860959) Score: 30.3 Filtered: HMM Sc=12.70 Sec struct Sc=17.60 * | * | * | * | * | * | * | Seq: TCCTTGTTAGTATAGTGGTgAGTGTTTCTGCCTGTCATGTGGAGACTGGAGTTTGAGTCCCCAACAGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<...>>>.>.......<.<<<<<<<<<<. chr12.trna8 (125424512-125424583) Length: 72 bp Type: Ala Anticodon: TGC at 33-35 (125424544-125424546) Score: 78.8 HMM Sc=54.40 Sec struct Sc=24.40 * | * | * | * | * | * | * | Seq: GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTTGCACGTATGAGGcCCCGGGTTCAATCCCCGGCATCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr12.trna9 (129716198-129716272) Length: 75 bp Type: Ile Anticodon: AAT at 36-38 (129716233-129716235) Score: 30.3 Filtered, Possible pseudogene: HMM Sc=33.10 Sec struct Sc=-2.80 * | * | * | * | * | * | * | Seq: TGGCTGATGaGCTCAGCTGGTgGGAGCATGGTGTTAATGAGGCTGAGGtCGTGGGTTCAATCCCCACCGGGCTAT Str: >>>>>.....>>>>.........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<..<<<<<. chr12.trna10 (125424264-125424193) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (125424231-125424229) Score: 66.5 HMM Sc=35.70 Sec struct Sc=30.80 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTgAGTATCCCCGCCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr12.trna11 (125412461-125412389) Length: 73 bp Type: Phe Anticodon: GAA at 34-36 (125412428-125412426) Score: 88.9 HMM Sc=68.40 Sec struct Sc=20.50 * | * | * | * | * | * | * | Seq: GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGtCCCTGGTTCGATCCCGGGTTTCGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr12.trna12 (125411962-125411891) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (125411929-125411927) Score: 66.5 HMM Sc=35.70 Sec struct Sc=30.80 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTgAGTATCCCCGCCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr12.trna13 (125406372-125406301) Length: 72 bp Type: Ala Anticodon: TGC at 33-35 (125406340-125406338) Score: 79.7 HMM Sc=55.30 Sec struct Sc=24.40 * | * | * | * | * | * | * | Seq: GGGGATGTAGCTCAGTGGTAGAGCGCATGCTTTGCATGTATGAGGcCCCGGGTTCGATCCCCGGCATCTCCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr12.trna14 (114386615-114386545) Length: 71 bp Type: Glu Anticodon: CTC at 33-35 (114386583-114386581) Score: 27.3 Filtered, Possible pseudogene: HMM Sc=32.40 Sec struct Sc=-5.10 * | * | * | * | * | * | * | Seq: GTGgATAGCCCAGCGGCtaTGGGAGCCGGGCTCTCACTCTGACGtCCTGGGTTCAAGTCCCAGTGTGCACA Str: >>>.>...>>>.........<<<...>>>>.......<<<<.....>>>>>.......<<<<<<...<<<. chr13.trna1 (115006889-115006814) Length: 76 bp Type: Ser Anticodon: GCT at 35-37 (115006855-115006853) Score: 24.5 Filtered, Possible pseudogene: HMM Sc=24.70 Sec struct Sc=-0.20 * | * | * | * | * | * | * | * Seq: AGCAGAGTGGtCACAGCAGTcAGCACAATGGCCTGCTGAGGCAGCACAGaCCTGAGTTCAAACCCCAGCTCTGCCA Str: .>>>>>>..>...>........<..<..>>.>.......<.<<........>>>.>.......<.<<<<<<<<<.. chr13.trna2 (95201976-95201904) Length: 73 bp Type: Phe Anticodon: GAA at 34-36 (95201943-95201941) Score: 88.9 HMM Sc=68.40 Sec struct Sc=20.50 * | * | * | * | * | * | * | Seq: GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGtCCCTGGTTCGATCCCGGGTTTCGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr13.trna3 (45492133-45492062) Length: 72 bp Type: Glu Anticodon: TTC at 34-36 (45492100-45492098) Score: 71.2 HMM Sc=46.50 Sec struct Sc=24.70 * | * | * | * | * | * | * | Seq: TCCCACATGGTCTAGCGGTtAGGATTCCTGGTTTTCACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr13.trna4 (42030133-42030061) Length: 73 bp Type: Glu Anticodon: CTC at 35-37 (42030099-42030097) Score: 33.8 Filtered: HMM Sc=26.20 Sec struct Sc=7.60 * | * | * | * | * | * | * | Seq: TCCcCTGGTGGTCTAGTGCTtAGGATTCGGTGCTCTCACCGCTGCTGCCTGCGTTCGATTCCCGGTCAGGGAA Str: >>>.>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>.>.......<.<<<<<<<<<<. chr13.trna5 (41634945-41634874) Length: 72 bp Type: Glu Anticodon: TTC at 34-36 (41634912-41634910) Score: 72.5 HMM Sc=47.50 Sec struct Sc=25.00 * | * | * | * | * | * | * | Seq: TCCCATATGGTCTAGCGGTtAGGATTCCTGGTTTTCACCCAGGTGGCCCGGGTTCGACTCCCGGTATGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr13.trna6 (31248174-31248101) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (31248140-31248138) Score: 80.9 HMM Sc=55.20 Sec struct Sc=25.70 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTCGGCTGTTAACCGAAAGGtTGGTGGTTCGAGCCCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna1 (21078291-21078372) Length: 82 bp Type: Leu Anticodon: AAG at 35-37 (21078325-21078327) Score: 74.8 HMM Sc=55.10 Sec struct Sc=19.70 * | * | * | * | * | * | * | * | Seq: GGTAGCGTGGCCGAGCGGTctAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGgCGTGGGTTCGAATCCCACCGCTGCCA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<. chr14.trna2 (21093529-21093610) Length: 82 bp Type: Leu Anticodon: TAG at 35-37 (21093563-21093565) Score: 74.1 HMM Sc=54.10 Sec struct Sc=20.00 * | * | * | * | * | * | * | * | Seq: GGTAGTGTGGCCGAGCGGTctAAGGCGCTGGATTTAGGCTCCAGTCTCTTCGGGGgCGTGGGTTCGAATCCCACCACTGCCA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<. chr14.trna3 (21101165-21101236) Length: 72 bp Type: Pro Anticodon: TGG at 33-35 (21101197-21101199) Score: 74.9 HMM Sc=48.50 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna4 (21149849-21149921) Length: 73 bp Type: Thr Anticodon: TGT at 34-36 (21149882-21149884) Score: 78.0 HMM Sc=54.80 Sec struct Sc=23.20 * | * | * | * | * | * | * | Seq: GGCCCTATAGCTCAGGGGTtAGAGCACTGGTCTTGTAAACCAGGGGtCGCGAGTTCAAATCTCGCTGGGGCCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna5 (21151432-21151520) Length: 89 bp Type: Tyr Anticodon: GTA at 34-36 (21151465-21151467) Score: 75.5 Possible intron: 38-53 (21151469-21151484) HMM Sc=47.60 Sec struct Sc=27.90 * | * | * | * | * | * | * | * | * Seq: CCTTCGATAGCTCAGCTGGTAGAGCGGAGGACTGTAGtacttaatgtgtggtcATCCTTAGGtCGCTGGTTCGATTCCGGCTCGAAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>.......................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna6 (21152175-21152246) Length: 72 bp Type: Pro Anticodon: TGG at 33-35 (21152207-21152209) Score: 70.3 HMM Sc=43.90 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna7 (23398910-23398982) Length: 73 bp Type: Arg Anticodon: ACG at 34-36 (23398943-23398945) Score: 67.6 HMM Sc=45.90 Sec struct Sc=21.70 * | * | * | * | * | * | * | Seq: GGGCCAGTGGCGCAATGGAtAACGCGTCTGACTACGGATCAGAAGAtTCCAGGTTCGACTCCTGGCTGGCTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna8 (73429679-73429750) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (73429711-73429713) Score: 77.3 HMM Sc=57.00 Sec struct Sc=20.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTCAAATCCGGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna9 (89445442-89445514) Length: 73 bp Type: Ala Anticodon: AGC at 34-36 (89445475-89445477) Score: 56.7 HMM Sc=35.80 Sec struct Sc=20.90 * | * | * | * | * | * | * | Seq: GGGGAATTAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGCGAGAGGtAGTGGGATCGATGCCCGCATTCTCCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna10 (102783429-102783502) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (102783463-102783465) Score: 81.2 HMM Sc=64.80 Sec struct Sc=16.40 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTtAGAGCGTGGTGCTAATAACGCCAAGGtCGCGGGTTCGATCCCCGTACGGGCCA Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. chr14.trna11 (74055607-74055529) Length: 79 bp Type: Lys Anticodon: TTT at 40-42 (74055568-74055566) Score: 47.3 Filtered: HMM Sc=41.10 Sec struct Sc=6.20 * | * | * | * | * | * | * | * Seq: TAAAcaacccAGATAGCTCAGTTGATAGAGCATCAGACTTTTAATCTGAGGGtCCAGGGTTCATGTCCCTGTTCCTTAA Str: >>>........>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<..<<<. chr14.trna12 (58706685-58706613) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (58706652-58706650) Score: 88.0 HMM Sc=69.30 Sec struct Sc=18.70 * | * | * | * | * | * | * | Seq: GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGtCGTGGGTTCGAGCCCCACGTTGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna13 (32236889-32236815) Length: 75 bp Type: Glu Anticodon: TTC at 36-38 (32236854-32236852) Score: 21.5 Filtered, Possible pseudogene: HMM Sc=31.70 Sec struct Sc=-10.20 * | * | * | * | * | * | * | Seq: TCCacCCTGTGGTCTAGTGGCtAAGACTTTGTGCTTTCATTGCTGCAtCCTAGGTTCAATTCCCAGtCAGGGAAG Str: >.>..>>>>..>>>>........<<<<.>.>>>.......<<<.<....>>.>>.......<<.<<.<<<<<.<. chr14.trna14 (21145259-21145178) Length: 82 bp Type: Leu Anticodon: TAG at 35-37 (21145225-21145223) Score: 38.7 Filtered, Possible pseudogene: HMM Sc=35.60 Sec struct Sc=3.10 * | * | * | * | * | * | * | * | Seq: GGTAGTGTGGTTGAATGGTctAAGGCACTGAATTTAGGCTCCAGTCTCTTTGGGGaCGTGGGTTTAAATCCCACTGCTGCAA Str: .>>>>>>..>>>...........<<<.>>>.>.......<.<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<.. chr14.trna15 (21137418-21137333) Length: 86 bp Type: Tyr Anticodon: GTA at 34-36 (21137385-21137383) Score: 22.8 Possible intron: 38-49 (21137381-21137370) Filtered: HMM Sc=15.60 Sec struct Sc=7.20 * | * | * | * | * | * | * | * | * Seq: TCTTTGAGAGATCAGCTGATAGAGTGGAGGACTGTACacatctgtggacATCCTTAGGtTGCTGGTTCAATTCCTGCTTgAGGGAA Str: >>>>>>>..>.>>........<<.<.>>>>>...................<<<<<.....>>.>>.......<<.<<<<.<<<<<. chr14.trna16 (21131444-21131351) Length: 94 bp Type: Tyr Anticodon: GTA at 34-36 (21131411-21131409) Score: 75.3 Possible intron: 38-58 (21131407-21131387) HMM Sc=47.40 Sec struct Sc=27.90 * | * | * | * | * | * | * | * | * | Seq: CCTTCGATAGCTCAGCTGGTAGAGCGGAGGACTGTAGattgtacagacatttgcggacATCCTTAGGtCGCTGGTTCGATTCCGGCTCGAAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>............................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna17 (21128210-21128117) Length: 94 bp Type: Tyr Anticodon: GTA at 34-36 (21128177-21128175) Score: 74.3 Possible intron: 38-58 (21128173-21128153) HMM Sc=46.40 Sec struct Sc=27.90 * | * | * | * | * | * | * | * | * | Seq: CCTTCGATAGCTCAGCTGGTAGAGCGGAGGACTGTAGactgcggaaacgtttgtggacATCCTTAGGtCGCTGGTTCAATTCCGGCTCGAAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>............................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna18 (21125716-21125623) Length: 94 bp Type: Tyr Anticodon: GTA at 34-36 (21125683-21125681) Score: 75.3 Possible intron: 38-58 (21125679-21125659) HMM Sc=46.40 Sec struct Sc=28.90 * | * | * | * | * | * | * | * | * | Seq: CCTTCGATAGCTCAGCTGGTAGAGCGGAGGACTGTAGattgtatagacatttgcggacATCCTTAGGtCGCTGGTTCGATTCCAGCTCGAAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>............................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna19 (21121351-21121258) Length: 94 bp Type: Tyr Anticodon: GTA at 34-36 (21121318-21121316) Score: 75.3 Possible intron: 38-58 (21121314-21121294) HMM Sc=47.40 Sec struct Sc=27.90 * | * | * | * | * | * | * | * | * | Seq: CCTTCGATAGCTCAGCTGGTAGAGCGGAGGACTGTAGcctgtagaaacatttgtggacATCCTTAGGtCGCTGGTTCGATTCCGGCTCGAAGGA Str: >>>>>>>..>>>>........<<<<.>>>>>............................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna20 (21099391-21099319) Length: 73 bp Type: Thr Anticodon: TGT at 34-36 (21099358-21099356) Score: 78.8 HMM Sc=54.70 Sec struct Sc=24.10 * | * | * | * | * | * | * | Seq: GGCTCCATAGCTCAGGGGTtAGAGCACTGGTCTTGTAAACCAGGGGtCGCGAGTTCAAATCTCGCTGGGGCCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna21 (21082021-21081949) Length: 73 bp Type: Thr Anticodon: TGT at 34-36 (21081988-21081986) Score: 80.0 HMM Sc=55.90 Sec struct Sc=24.10 * | * | * | * | * | * | * | Seq: GGCTCCATAGCTCAGGGGTtAGAGCGCTGGTCTTGTAAACCAGGGGtCGCGAGTTCAATTCTCGCTGGGGCCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna22 (21081631-21081560) Length: 72 bp Type: Pro Anticodon: AGG at 33-35 (21081599-21081597) Score: 70.2 HMM Sc=43.80 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr14.trna23 (21077566-21077495) Length: 72 bp Type: Pro Anticodon: AGG at 33-35 (21077534-21077532) Score: 70.2 HMM Sc=43.80 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr15.trna1 (45493349-45493420) Length: 72 bp Type: His Anticodon: GTG at 34-36 (45493382-45493384) Score: 60.1 HMM Sc=29.80 Sec struct Sc=30.30 * | * | * | * | * | * | * | Seq: GCCGTGATCGTATAGTGGTtAGTACTCTGCGTTGTGGCCGCAGCAaCCTCGGTTCGAATCCGAGTCACGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr15.trna2 (79152904-79152976) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (79152937-79152939) Score: 88.0 HMM Sc=69.30 Sec struct Sc=18.70 * | * | * | * | * | * | * | Seq: GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGtCGTGGGTTCGAGCCCCACGTTGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr15.trna3 (80036997-80037069) Length: 73 bp Type: Cys Anticodon: GCA at 34-36 (80037030-80037032) Score: 78.7 HMM Sc=58.50 Sec struct Sc=20.20 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGTGGGtAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTCAAATCCGGGTGCCCCCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr15.trna4 (89878304-89878376) Length: 73 bp Type: Arg Anticodon: TCG at 34-36 (89878337-89878339) Score: 74.8 HMM Sc=55.10 Sec struct Sc=19.70 * | * | * | * | * | * | * | Seq: GGCCGCGTGGCCTAATGGAtAAGGCGTCTGACTTCGGATCAGAAGAtTGCAGGTTCGAGTCCTGCCGCGGTCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr15.trna5 (96327874-96327946) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (96327907-96327909) Score: 35.4 Filtered, Possible truncation, pseudogene: HMM Sc=31.20 Sec struct Sc=4.20 * | * | * | * | * | * | * | Seq: GCaCTGCACAGTCAGTcagtAGAGCATGGGACTCTTAATCCCAGGGtCGTGGGTTCAAGCCCCACGTTGGGCG Str: >>.>>>>.>............<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<...<<<<. chr15.trna6 (76674838-76674765) Length: 74 bp Type: Lys Anticodon: CTT at 34-36 (76674805-76674803) Score: 35.8 Filtered, Possible pseudogene: HMM Sc=42.80 Sec struct Sc=-7.00 * | * | * | * | * | * | * | Seq: GCCTGGCTACCTCAGTTGGTAGAGCATGGGACTCTTAATCCCAGAGtcAGTGGGTTCAAGCCTCACATTGAGTG Str: >>.>>>....>>>........<<<..>>>>>.......<<<<<......>>>>>.......<<<<<.<<<.<<. chr15.trna7 (66161471-66161400) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (66161438-66161436) Score: 71.5 HMM Sc=44.00 Sec struct Sc=27.50 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTtAGCACTCTGGACTCTGAATCCAGCGaTCCGAGTTCAAATCTCGGTGGAACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr15.trna8 (45492682-45492611) Length: 72 bp Type: His Anticodon: GTG at 34-36 (45492649-45492647) Score: 60.1 HMM Sc=29.80 Sec struct Sc=30.30 * | * | * | * | * | * | * | Seq: GCCGTGATCGTATAGTGGTtAGTACTCTGCGTTGTGGCCGCAGCAaCCTCGGTTCGAATCCGAGTCACGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr15.trna9 (45490875-45490804) Length: 72 bp Type: His Anticodon: GTG at 34-36 (45490842-45490840) Score: 60.1 HMM Sc=29.80 Sec struct Sc=30.30 * | * | * | * | * | * | * | Seq: GCCGTGATCGTATAGTGGTtAGTACTCTGCGTTGTGGCCGCAGCAaCCTCGGTTCGAATCCGAGTCACGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr15.trna10 (40886104-40886023) Length: 82 bp Type: Ser Anticodon: GCT at 34-36 (40886071-40886069) Score: 88.4 HMM Sc=61.60 Sec struct Sc=26.80 * | * | * | * | * | * | * | * | Seq: GACGAGGTGGCCGAGTGGTtAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATCCCATCCTCGTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr15.trna11 (26327452-26327381) Length: 72 bp Type: Glu Anticodon: TTC at 34-36 (26327419-26327417) Score: 71.2 HMM Sc=46.50 Sec struct Sc=24.70 * | * | * | * | * | * | * | Seq: TCCCACATGGTCTAGCGGTtAGGATTCCTGGTTTTCACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr16.trna1 (2977662-2977734) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (2977695-2977697) Score: 46.8 Filtered: HMM Sc=40.20 Sec struct Sc=6.60 * | * | * | * | * | * | * | Seq: CCCCGGCTGGCTCAGTCAGTAGATCATGAGACTCTTAATCTCAGGGtCGTGGGTTCACGCCCCACACTGGGCG Str: .>>>>>...>.>>........<<.<.>>>>>.......<<<<<.....>>>>>.......<<<<<.<<<<<.. chr16.trna2 (3200675-3200747) Length: 73 bp Type: Arg Anticodon: CCG at 34-36 (3200708-3200710) Score: 67.0 HMM Sc=49.40 Sec struct Sc=17.60 * | * | * | * | * | * | * | Seq: GGCCGCGTGGCCTAATGGAtAAGGCGTCTGATTCCGGATCAGAAGAtTGAGGGTTCGAGTCCCTTCGTGGTCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna3 (3202901-3202973) Length: 73 bp Type: Arg Anticodon: CCT at 34-36 (3202934-3202936) Score: 71.7 HMM Sc=56.30 Sec struct Sc=15.40 * | * | * | * | * | * | * | Seq: GCCCCGGTGGCCTAATGGAtAAGGCATTGGCCTCCTAAGCCAGGGAtTGTGGGTTCGAGTCCCACCCGGGGTA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna4 (3208923-3208994) Length: 72 bp Type: Pro Anticodon: TGG at 33-35 (3208955-3208957) Score: 70.3 HMM Sc=43.90 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna5 (3210386-3210480) Length: 95 bp Type: Pro Anticodon: AGG at 33-35 (3210418-3210420) Score: 36.6 Possible intron: 37-52 (3210422-3210437) Filtered: HMM Sc=30.40 Sec struct Sc=6.20 * | * | * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTGTGGTTCTCGCTTAGGGaccacagggacaagccCGGGAGACCCAAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>.>.......................<.<<<.>.>..<.<...>>>>>.......<<<<<<<<<<<<. chr16.trna6 (3214939-3215011) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (3214972-3214974) Score: 57.8 HMM Sc=44.60 Sec struct Sc=13.20 * | * | * | * | * | * | * | Seq: GCCTGGCTAGCTCAGTCGGCAAAGCATGAGACTCTTAATCTCAGGGtCGTGGGCTCGAGCTCCATGTTGGGCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna7 (3222049-3222120) Length: 72 bp Type: Pro Anticodon: CGG at 33-35 (3222081-3222083) Score: 70.2 HMM Sc=43.80 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna8 (3225692-3225764) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (3225725-3225727) Score: 87.8 HMM Sc=68.80 Sec struct Sc=19.00 * | * | * | * | * | * | * | Seq: GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGtCGTGGGTTCGAGCCCCACGTTGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna9 (3238094-3238165) Length: 72 bp Type: Pro Anticodon: TGG at 33-35 (3238126-3238128) Score: 70.3 HMM Sc=43.90 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna10 (3239634-3239705) Length: 72 bp Type: Pro Anticodon: AGG at 33-35 (3239666-3239668) Score: 70.2 HMM Sc=43.80 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna11 (3241501-3241573) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (3241534-3241536) Score: 82.3 HMM Sc=69.10 Sec struct Sc=13.20 * | * | * | * | * | * | * | Seq: GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCTCAGGGtCGTGGGTTCGAGCCCCACGTTGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna12 (3241989-3242060) Length: 72 bp Type: Pro Anticodon: AGG at 33-35 (3242021-3242023) Score: 71.5 HMM Sc=45.10 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGATGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna13 (3243918-3243990) Length: 73 bp Type: Arg Anticodon: CCT at 34-36 (3243951-3243953) Score: 54.7 HMM Sc=36.70 Sec struct Sc=18.00 * | * | * | * | * | * | * | Seq: GCCCCAGTGGCCTGATGGAtAAGGTACTGGCCTCCTAAGCCAGGGAtTGTGGGTTCGAGTTCCACCTGGGGTA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna14 (3246153-3246225) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (3246186-3246188) Score: 48.5 Filtered, Possible pseudogene: HMM Sc=54.70 Sec struct Sc=-6.20 * | * | * | * | * | * | * | Seq: GCCCAGCTAGCTCAGCCGGTAGAGCACAAGACTCTTAATCTCAGGGtCGTGGGTTTGAGCCCTGTGTTGAGCA Str: >>.>>>>..>>>>........<<<<...>>>.......<<<.......>>>>>.......<<<<<<<<<.<<. chr16.trna16 (14379750-14379821) Length: 72 bp Type: Thr Anticodon: CGT at 33-35 (14379782-14379784) Score: 79.6 HMM Sc=56.00 Sec struct Sc=23.60 * | * | * | * | * | * | * | Seq: GGCGCGGTGGCCAAGTGGTAAGGCGTCGGTCTCGTAAACCGAAGAtCACGGGTTCGAACCCCGTCCGTGCCT Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna17 (22308461-22308542) Length: 82 bp Type: Leu Anticodon: AAG at 35-37 (22308495-22308497) Score: 74.8 HMM Sc=55.10 Sec struct Sc=19.70 * | * | * | * | * | * | * | * | Seq: GGTAGCGTGGCCGAGCGGTctAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGGgCGTGGGTTCGAATCCCACCGCTGCCA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<. chr16.trna18 (57333863-57333945) Length: 83 bp Type: Leu Anticodon: CAG at 35-37 (57333897-57333899) Score: 77.3 HMM Sc=47.50 Sec struct Sc=29.80 * | * | * | * | * | * | * | * | Seq: GTCAGGATGGCCGAGCGGTctAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAATCCCACTTCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr16.trna19 (70822597-70822667) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (70822629-70822631) Score: 54.7 HMM Sc=44.30 Sec struct Sc=10.40 * | * | * | * | * | * | * | Seq: GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCATGCGGGCGGCCGGGCTTCGATTCCTGGCCAATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>.>>.........<<.<<<<<<<<. chr16.trna20 (70823410-70823480) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (70823442-70823444) Score: 81.0 HMM Sc=59.90 Sec struct Sc=21.10 * | * | * | * | * | * | * | Seq: GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr16.trna21 (71460396-71460468) Length: 73 bp Type: Met Anticodon: CAT at 34-36 (71460429-71460431) Score: 82.7 HMM Sc=58.80 Sec struct Sc=23.90 * | * | * | * | * | * | * | Seq: GCCCTCTTAGCGCAGTGGGcAGCGCGTCAGTCTCATAATCTGAAGGtCCTGAGTTCGAGCCTCAGAGAGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna22 (87417700-87417628) Length: 73 bp Type: Met Anticodon: CAT at 34-36 (87417667-87417665) Score: 77.4 HMM Sc=56.10 Sec struct Sc=21.30 * | * | * | * | * | * | * | Seq: GCCTCGTTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGtCGTGAGTTCGAGCCTCACACGGGGCA Str: >>>>>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna23 (80479528-80479452) Length: 77 bp Type: Ala Anticodon: GGC at 39-41 (80479490-80479488) Score: 38.2 Filtered: HMM Sc=28.40 Sec struct Sc=9.80 * | * | * | * | * | * | * | * Seq: GGTGAGTGtGCTTtcaggatGTGGAAGAGCACTGGGCTGGCCATCCAGAGtCCCAGGTTCAAGTCCTGGCTCGACCT Str: >>>>>>...>>>>.............<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<.<<. chr16.trna24 (73512288-73512216) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (73512255-73512253) Score: 89.0 HMM Sc=67.80 Sec struct Sc=21.20 * | * | * | * | * | * | * | Seq: GCCTGGATAGCTCAGTTGGTAGAGCATCAGACTTTTAATCTGAGGGtCCAGGGTTCAAGTCCCTGTTCAGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna25 (70813012-70812942) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (70812980-70812978) Score: 81.0 HMM Sc=59.90 Sec struct Sc=21.10 * | * | * | * | * | * | * | Seq: GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr16.trna26 (70812184-70812114) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (70812152-70812150) Score: 75.0 HMM Sc=55.60 Sec struct Sc=19.40 * | * | * | * | * | * | * | Seq: GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTTGATTCCCGGCCAGTGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr16.trna27 (57334474-57334392) Length: 83 bp Type: Leu Anticodon: CAG at 35-37 (57334440-57334438) Score: 77.3 HMM Sc=47.50 Sec struct Sc=29.80 * | * | * | * | * | * | * | * | Seq: GTCAGGATGGCCGAGCGGTctAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGGCGTGGGTTCGAATCCCACTTCTGACA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr16.trna28 (22207113-22207032) Length: 82 bp Type: Leu Anticodon: TAG at 35-37 (22207079-22207077) Score: 73.9 HMM Sc=57.10 Sec struct Sc=16.80 * | * | * | * | * | * | * | * | Seq: GGTAGCGTGGCCGAGTGGTctAAGGCGCTGGATTTAGGCTCCAGTCATTTCGATGgCGTGGGTTCGAATCCCACCGCTGCCA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>....<<...>>>>>.......<<<<<<<<<<<<. chr16.trna29 (3234204-3234133) Length: 72 bp Type: Pro Anticodon: TGG at 33-35 (3234172-3234170) Score: 70.3 HMM Sc=43.90 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna30 (3232706-3232635) Length: 72 bp Type: Pro Anticodon: AGG at 33-35 (3232674-3232672) Score: 70.2 HMM Sc=43.80 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna31 (3230627-3230555) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (3230594-3230592) Score: 69.3 HMM Sc=55.00 Sec struct Sc=14.30 * | * | * | * | * | * | * | Seq: GCCCGGCTAGCTCAGTCGATAGAGCATGAGACTCTTAATCTCAGGGtCGTGGGTTCGAGCCGCACGTTGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<. chr16.trna32 (3221031-3220961) Length: 71 bp Type: Pro Anticodon: TGG at 33-35 (3220999-3220997) Score: 27.6 Filtered, Possible pseudogene: HMM Sc=29.60 Sec struct Sc=-2.00 * | * | * | * | * | * | * | Seq: GGCCTGTTGGTCTAGAGGTATGATTCTCGCTTTGGGTGCGAGAGGCCCCGGTGCGAGTCCCAGAGGAGCCC Str: >>>.>.>..>>>.........<<<.>>>>>.......<<<<<....>..>>.......<<..<<.<.<<<. chr16.trna33 (3207478-3207406) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (3207445-3207443) Score: 83.1 HMM Sc=64.20 Sec struct Sc=18.90 * | * | * | * | * | * | * | Seq: GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACCCTTAATCTCAGGGtCGTGGGTTCGAGCCCCACGTTGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr16.trna34 (686806-686736) Length: 71 bp Type: Gly Anticodon: CCC at 33-35 (686774-686772) Score: 75.1 HMM Sc=46.00 Sec struct Sc=29.10 * | * | * | * | * | * | * | Seq: GCGCCGCTGGTGTAGTGGTATCATGCAAGATTCCCATTCTTGCGaCCCGGGTTCGATTCCCGGGCGGCGCA Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr17.trna1 (8022473-8022545) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (8022506-8022508) Score: 87.8 HMM Sc=67.30 Sec struct Sc=20.50 * | * | * | * | * | * | * | Seq: GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGtCCAGGGTTCAAGTCCCTGTTCGGGCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna2 (8023070-8023141) Length: 72 bp Type: Gln Anticodon: CTG at 34-36 (8023103-8023105) Score: 71.5 HMM Sc=44.00 Sec struct Sc=27.50 * | * | * | * | * | * | * | Seq: GGTTCCATGGTGTAATGGTtAGCACTCTGGACTCTGAATCCAGCGaTCCGAGTTCAAATCTCGGTGGAACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr17.trna3 (8024243-8024330) Length: 88 bp Type: Arg Anticodon: TCT at 34-36 (8024276-8024278) Score: 70.8 Possible intron: 38-52 (8024280-8024294) HMM Sc=50.50 Sec struct Sc=20.30 * | * | * | * | * | * | * | * | * Seq: GGCTCTGTGGCGCAATGGAtAGCGCATTGGACTTCTAgtgacgaatagagcaATTCAAAGGtTGTGGGTTCGAATCCCACCAGAGTCG Str: >>>>>>>..>>>>........<<<<.>>>>>......................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna4 (8029064-8029134) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (8029096-8029098) Score: 81.0 HMM Sc=59.90 Sec struct Sc=21.10 * | * | * | * | * | * | * | Seq: GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCAATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr17.trna5 (8089676-8089747) Length: 72 bp Type: Trp Anticodon: CCA at 33-35 (8089708-8089710) Score: 73.3 HMM Sc=50.60 Sec struct Sc=22.70 * | * | * | * | * | * | * | Seq: GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCAAATCACGTCGGGGTCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna6 (8090184-8090265) Length: 82 bp Type: Ser Anticodon: GCT at 34-36 (8090217-8090219) Score: 88.4 HMM Sc=61.60 Sec struct Sc=26.80 * | * | * | * | * | * | * | * | Seq: GACGAGGTGGCCGAGTGGTtAAGGCGATGGACTGCTAATCCATTGTGCTCTGCACGCGTGGGTTCGAATCCCATCCTCGTCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr17.trna7 (8090478-8090551) Length: 74 bp Type: Thr Anticodon: AGT at 35-37 (8090512-8090514) Score: 82.6 HMM Sc=61.60 Sec struct Sc=21.00 * | * | * | * | * | * | * | Seq: GGCGCCGTGGCTTAGTTGGTtAAAGCGCCTGTCTAGTAAACAGGAGAtCCTGGGTTCGAATCCCAGCGGTGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna8 (8090911-8090984) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (8090945-8090947) Score: 81.2 HMM Sc=64.80 Sec struct Sc=16.40 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTtAGAGCGTGGTGCTAATAACGCCAAGGtCGCGGGTTCGATCCCCGTACGGGCCA Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. chr17.trna9 (8124866-8124937) Length: 72 bp Type: Gly Anticodon: TCC at 34-36 (8124899-8124901) Score: 73.8 HMM Sc=49.30 Sec struct Sc=24.50 * | * | * | * | * | * | * | Seq: GCGTTGGTGGTATAGTGGTaAGCATAGCTGCCTTCCAAGCAGTTGaCCCGGGTTCGATTCCCGGCCAACGCA Str: >>>>>>>..>>.>........<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr17.trna10 (19411494-19411565) Length: 72 bp Type: Trp Anticodon: CCA at 33-35 (19411526-19411528) Score: 75.1 HMM Sc=52.40 Sec struct Sc=22.70 * | * | * | * | * | * | * | Seq: GACCTCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCAAGTCACGTCGGGGTCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna11 (19764175-19764245) Length: 71 bp Type: Gly Anticodon: CCC at 33-35 (19764207-19764209) Score: 68.3 HMM Sc=51.50 Sec struct Sc=16.80 * | * | * | * | * | * | * | Seq: GCATTGGTGGTTCAATGGTAGAATTCTCGCCTCCCACGCAGGAGaCCCAGGTTCGATTCCTGGCCAATGCA Str: >>>>>>>..>>>>.......<<<<.>>.>>.......<<.<<....>>>>>.......<<<<<<<<<<<<. chr17.trna12 (29877093-29877164) Length: 72 bp Type: Thr Anticodon: CGT at 33-35 (29877125-29877127) Score: 78.3 HMM Sc=58.20 Sec struct Sc=20.10 * | * | * | * | * | * | * | Seq: GGCGCGGTGGCCAAGTGGTAAGGCGTCGGTCTCGTAAACCGAAGAtCGCGGGTTCGAACCCCGTCCGTGCCT Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna13 (37023898-37023969) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (37023930-37023932) Score: 81.9 HMM Sc=61.60 Sec struct Sc=20.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTCAAATCCGGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna14 (47269890-47269961) Length: 72 bp Type: Gln Anticodon: TTG at 34-36 (47269923-47269925) Score: 72.6 HMM Sc=45.70 Sec struct Sc=26.90 * | * | * | * | * | * | * | Seq: GGTCCCATGGTGTAATGGTtAGCACTCTGGACTTTGAATCCAGCGaTCCGAGTTCAAATCTCGGTGGGACCT Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr17.trna15 (58863593-58863663) Length: 71 bp Type: Sup Anticodon: TTA at 33-35 (58863625-58863627) Score: 57.1 Filtered: HMM Sc=50.00 Sec struct Sc=7.10 * | * | * | * | * | * | * | Seq: GCCCGGATAGTTCAGTTGGTAGAGCATCAGACTTAATCAGAGGGtCCAGGGTTCAAGTCCCTGTTTGGGTG Str: >>>>>>>..>>>>........<<<<.>>.>>.....<<.<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna16 (73030001-73030073) Length: 73 bp Type: Arg Anticodon: CCT at 34-36 (73030034-73030036) Score: 72.3 HMM Sc=54.00 Sec struct Sc=18.30 * | * | * | * | * | * | * | Seq: GCCCCAGTGGCCTAATGGAtAAGGCACTGGCCTCCTAAGCCAGGGAtTGTGGGTTCGAGTCCCACCTGGGGTA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna17 (73031208-73031280) Length: 73 bp Type: Arg Anticodon: TCG at 34-36 (73031241-73031243) Score: 68.8 HMM Sc=48.90 Sec struct Sc=19.90 * | * | * | * | * | * | * | Seq: GACCGCGTGGCCTAATGGAtAAGGCGTCTGACTTCGGATCAGAAGAtTGAGGGTTCGAGTCCCTTCGTGGTCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna18 (80452668-80452597) Length: 72 bp Type: iMet Anticodon: CAT at 33-35 (80452636-80452634) Score: 60.4 HMM Sc=30.80 Sec struct Sc=29.60 * | * | * | * | * | * | * | Seq: AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCCCATAACCCAGAGGtCGATGGATCGAAACCATCCTCTGCTA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna19 (73030598-73030526) Length: 73 bp Type: Arg Anticodon: CCT at 34-36 (73030565-73030563) Score: 71.1 HMM Sc=52.80 Sec struct Sc=18.30 * | * | * | * | * | * | * | Seq: GCCCCAGTGGCCTAATGGAtAAGGCACTGGCCTCCTAAGCCAGGGAtTGTGGGTTCGAGTCCCACCTGGGGTG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna20 (66391031-66390957) Length: 75 bp Type: Cys Anticodon: GCA at 36-38 (66390996-66390994) Score: 33.6 Filtered: HMM Sc=24.70 Sec struct Sc=8.90 * | * | * | * | * | * | * | Seq: GGCAGAATGGTGCAGCGGTtcAGCACCCAgGCTCTGCAGcCAGCTGTTGCCTGGGCTCAAATCCCAGCTCTGCCA Str: >>>>>>...>>>>.........<<<<.>>.>>>........<<<<<....>>>>>.......<<<<<.<<<<<<. chr17.trna21 (66016085-66016013) Length: 73 bp Type: Arg Anticodon: CCG at 34-36 (66016052-66016050) Score: 64.9 HMM Sc=47.20 Sec struct Sc=17.70 * | * | * | * | * | * | * | Seq: GACCCAGTGGCCTAATGGAtAAGGCATCAGCCTCCGGAGCTGGGGAtTGTGGGTTCGAGTCCCATCTGGGTCG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna22 (62526991-62526918) Length: 74 bp Type: Thr Anticodon: AGT at 35-37 (62526957-62526955) Score: 44.3 Filtered: HMM Sc=27.60 Sec struct Sc=16.70 * | * | * | * | * | * | * | Seq: AGCACCATGGCTTAGCTGGTtAAAGCACCTGTCTAGTAAACAGGAGAtCCTGAGtTTCAATTCCAATGGTGCCT Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<......>>...........<<.<<<<<<.. chr17.trna23 (38273626-38273553) Length: 74 bp Type: Sup Anticodon: TCA at 35-37 (38273592-38273590) Score: 48.8 Filtered: HMM Sc=35.70 Sec struct Sc=13.10 * | * | * | * | * | * | * | Seq: GACCGTGTGGCCtTAATGGAtAAGGTGTCTGACTTCAGATCAGAAGAtTGAGGGTTTGAGTCCCTTTGTGGTCA Str: >>>>>>>..>>>.>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna24 (38239005-38238933) Length: 73 bp Type: Val Anticodon: TAC at 34-36 (38238972-38238970) Score: 32.5 Filtered, Possible pseudogene: HMM Sc=27.70 Sec struct Sc=4.80 * | * | * | * | * | * | * | Seq: GATTCTATAGTGTAGCAGTtATCACATCTGCTTTACATGCAGAAGGtCCTAGGTTTGAGCCGCGGTGGAACCA Str: >.>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>..>.......<..<<<<<<<.<. chr17.trna25 (37310815-37310744) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (37310783-37310781) Score: 81.9 HMM Sc=61.60 Sec struct Sc=20.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTCAAATCCGGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna26 (37310058-37309987) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (37310026-37310024) Score: 81.9 HMM Sc=61.60 Sec struct Sc=20.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTCAAATCCGGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna27 (37025616-37025545) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (37025584-37025582) Score: 81.8 HMM Sc=62.50 Sec struct Sc=19.30 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGtCCCTGGTTCAAATCCGGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna28 (37018008-37017937) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (37017976-37017974) Score: 71.6 HMM Sc=51.40 Sec struct Sc=20.20 * | * | * | * | * | * | * | Seq: GGGGGTATAGCTCAGGGGTAGAGCATTTGACTGCAGATCAAGAAGtCCCCGGTTCAAATCCGGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna29 (36990046-36989975) Length: 72 bp Type: Cys Anticodon: GCA at 33-35 (36990014-36990012) Score: 47.6 Filtered: HMM Sc=37.50 Sec struct Sc=10.10 * | * | * | * | * | * | * | Seq: GGGGGTAGGGCTCAGGGATAGAGCATTTGACTGCAGATCAAGAGGtCCCCGGTTCGAATCTAGGTGCCCCCT Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<. chr17.trna30 (36908107-36908034) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (36908073-36908071) Score: 80.9 HMM Sc=55.20 Sec struct Sc=25.70 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTCGGCTGTTAACCGAAAGGtTGGTGGTTCGAGCCCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna32 (8130382-8130309) Length: 74 bp Type: Ile Anticodon: AAT at 35-37 (8130348-8130346) Score: 81.2 HMM Sc=64.80 Sec struct Sc=16.40 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTtAGAGCGTGGTGCTAATAACGCCAAGGtCGCGGGTTCGAACCCCGTACGGGCCA Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<. chr17.trna33 (8130009-8129928) Length: 82 bp Type: Ser Anticodon: AGA at 34-36 (8129976-8129974) Score: 89.6 HMM Sc=56.90 Sec struct Sc=32.70 * | * | * | * | * | * | * | * | Seq: GTAGTCGTGGCCGAGTGGTtAAGGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr17.trna34 (8129626-8129553) Length: 74 bp Type: Thr Anticodon: AGT at 35-37 (8129592-8129590) Score: 82.6 HMM Sc=61.60 Sec struct Sc=21.00 * | * | * | * | * | * | * | Seq: GGCGCCGTGGCTTAGTTGGTtAAAGCGCCTGTCTAGTAAACAGGAGAtCCTGGGTTCGAATCCCAGCGGTGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna35 (8126222-8126151) Length: 72 bp Type: Pro Anticodon: CGG at 33-35 (8126190-8126188) Score: 70.2 HMM Sc=43.80 Sec struct Sc=26.40 * | * | * | * | * | * | * | Seq: GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTCGGGTGCGAGAGGtCCCGGGTTCAAATCCCGGACGAGCCC Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna36 (8125627-8125556) Length: 72 bp Type: Asp Anticodon: GTC at 34-36 (8125594-8125592) Score: 66.5 HMM Sc=35.70 Sec struct Sc=30.80 * | * | * | * | * | * | * | Seq: TCCTCGTTAGTATAGTGGTgAGTATCCCCGCCTGTCACGCGGGAGaCCGGGGTTCGATTCCCCGACGGGGAG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr17.trna37 (8124258-8124187) Length: 72 bp Type: Trp Anticodon: CCA at 33-35 (8124226-8124224) Score: 73.4 HMM Sc=53.00 Sec struct Sc=20.40 * | * | * | * | * | * | * | Seq: GGCCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGtTGCGTGTTCAAATCACGTCGGGGTCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna38 (8109477-8109391) Length: 87 bp Type: Ile Anticodon: AAT at 48-50 (8109430-8109428) Score: 20.5 Filtered, Possible truncation, pseudogene: HMM Sc=21.90 Sec struct Sc=-1.40 * | * | * | * | * | * | * | * | * Seq: GactcTGTCTCAaaaaaaaaaaaaaaaaATGGTtAGAGTGTGGTGCTAATAACCCCAAGGtCGCAGGTTTGATCCCTGTAGGGGCCA Str: >.......>>>........................<<<..>>>.>.......<.<<<.....>>>>>.......<<<<<......<. chr17.trna39 (8042843-8042770) Length: 74 bp Type: Thr Anticodon: AGT at 35-37 (8042809-8042807) Score: 80.1 HMM Sc=59.10 Sec struct Sc=21.00 * | * | * | * | * | * | * | Seq: GGCGCCGTGGCTTAGCTGGTtAAAGCGCCTGTCTAGTAAACAGGAGAtCCTGGGTTCGAATCCCAGCGGTGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr17.trna40 (8042280-8042199) Length: 82 bp Type: Ser Anticodon: CGA at 34-36 (8042247-8042245) Score: 95.1 HMM Sc=66.10 Sec struct Sc=29.00 * | * | * | * | * | * | * | * | Seq: GCTGTGATGGCCGAGTGGTtAAGGCGTTGGACTCGAAATCCAATGGGGTCTCCCCGCGCAGGTTCGAATCCTGCTCACAGCG Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<. chr17.trna41 (8023713-8023632) Length: 82 bp Type: Leu Anticodon: TAG at 35-37 (8023679-8023677) Score: 75.2 HMM Sc=53.50 Sec struct Sc=21.70 * | * | * | * | * | * | * | * | Seq: GGTAGCGTGGCCGAGCGGTctAAGGCGCTGGATTTAGGCTCCAGTCTCTTCGGAGGCGTGGGTTCGAATCCCACCGCTGCCA Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<. chr18.trna1 (55345854-55345925) Length: 72 bp Type: Gly Anticodon: TCC at 34-36 (55345887-55345889) Score: 28.8 Filtered, Possible pseudogene: HMM Sc=35.60 Sec struct Sc=-6.80 * | * | * | * | * | * | * | Seq: GTGTTGATGGTATAGTGGTgAGCATAGCTGCCTTCCAAGCAATTGaCCCGACTTCGATTCCCAGCCAATGCA Str: >>>>>>...>>.>........<.<<.>.>>>.......<<<.<....>.>...........<.<.<<<<<<. chr18.trna2 (55346177-55346248) Length: 72 bp Type: Gly Anticodon: TCC at 34-36 (55346210-55346212) Score: 28.8 Filtered, Possible pseudogene: HMM Sc=33.70 Sec struct Sc=-4.90 * | * | * | * | * | * | * | Seq: GTGTTGATGGTATAGTGGTgAGCATAGCTGCCTTCCAAGCAATTGaCCCGACTTCAATTCCCAGCCAACGCA Str: >>>>>>...>>.>........<.<<.>.>>>.......<<<.<....>.>...........<.<.<<<<<<. chr18.trna3 (43669343-43669271) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (43669310-43669308) Score: 63.1 Filtered: HMM Sc=58.60 Sec struct Sc=4.50 * | * | * | * | * | * | * | Seq: GACGAGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGtCGTGGGTTTGAGCCCCATGTTGGGCA Str: >.>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<.<.<. chr19.trna1 (1383562-1383635) Length: 74 bp Type: Asn Anticodon: GTT at 35-37 (1383596-1383598) Score: 80.9 HMM Sc=55.20 Sec struct Sc=25.70 * | * | * | * | * | * | * | Seq: GTCTCTGTGGCGCAATCGGTtAGCGCGTTCGGCTGTTAACCGAAAGGtTGGTGGTTCGAGCCCACCCAGGGACG Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr19.trna2 (4724082-4724153) Length: 72 bp Type: Gly Anticodon: TCC at 34-36 (4724115-4724117) Score: 73.8 HMM Sc=49.30 Sec struct Sc=24.50 * | * | * | * | * | * | * | Seq: GCGTTGGTGGTATAGTGGTtAGCATAGCTGCCTTCCAAGCAGTTGaCCCGGGTTCGATTCCCGGCCAACGCA Str: >>>>>>>..>>.>........<.<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr19.trna3 (12299376-12299449) Length: 74 bp Type: Ala Anticodon: GGC at 35-37 (12299410-12299412) Score: 37.8 Filtered: HMM Sc=22.40 Sec struct Sc=15.40 * | * | * | * | * | * | * | Seq: GGCTCTGTGGCTTTGTGGGTtAAAGTACTTGTCTGGCAAACAGGAGAtGCTGGAtTTCAATCCCAGCAGGGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>.........<<<<<<<<<<<. chr19.trna4 (33667963-33668036) Length: 74 bp Type: Thr Anticodon: AGT at 35-37 (33667997-33667999) Score: 82.6 HMM Sc=61.60 Sec struct Sc=21.00 * | * | * | * | * | * | * | Seq: GGCGCCGTGGCTTAGTTGGTtAAAGCGCCTGTCTAGTAAACAGGAGAtCCTGGGTTCGAATCCCAGCGGTGCCT Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr19.trna5 (36066750-36066822) Length: 73 bp Type: Lys Anticodon: CTT at 34-36 (36066783-36066785) Score: 54.8 HMM Sc=42.40 Sec struct Sc=12.40 * | * | * | * | * | * | * | Seq: GCCCAGCTAGCTCAGTCGGTAGAGCATAAGACTCTTAATCTCAGGGtTGTGGATTCGTGCCCCATGCTGGGTG Str: >>>>>>>..>>>>........<<<<.>.>>>.......<<<.<.....>>>>.........<<<<<<<<<<<. chr19.trna6 (52425466-52425393) Length: 74 bp Type: Lys Anticodon: CTT at 32-34 (52425435-52425433) Score: 56.6 * | * | * | * | * | * | * | Seq: GCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGtCATGGGTTCGTGCCCCATGTTGGGtgcCA Str: >>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<.....<. chr19.trna7 (50038005-50037933) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (50037972-50037970) Score: 53.8 Filtered, Possible pseudogene: HMM Sc=49.90 Sec struct Sc=3.90 * | * | * | * | * | * | * | Seq: ACCTGGGTAGCTTAGTTGGTAGAGCATTGGACTTTTAATTTGAGGGcCCAGGTTTCAAGTCCCTGTTTGGGTG Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>.........<<<<<<<<<<<. chr19.trna8 (45981945-45981859) Length: 87 bp Type: SeC Anticodon: TCA at 36-38 (45981910-45981908) Score: 146.9 HMM Sc=0.00 Sec struct Sc=0.00 * | * | * | * | * | * | * | * | * Seq: GCCCGGATGATCCTCAGTGGTCTGGGGTGCAGGCTTCAAACCTGTAGCTGTCTAGCGACAGAGTGGTTCAATTCCACCTTTCGGGCG Str: >>>>>>>.>..>>>>>>....<<<<<<>>>>>>.......<<<<<<.>>>>>....<<<<<.>>>>.......<<<<<.<<<<<<<. chr19.trna9 (41748214-41748142) Length: 73 bp Type: Lys Anticodon: TTT at 34-36 (41748181-41748179) Score: 49.9 Filtered, Possible pseudogene: HMM Sc=54.00 Sec struct Sc=-4.10 * | * | * | * | * | * | * | Seq: GCCAGGATAGTTCAGGTGGTAGAGCATCAGACTTTTAACCTGAGGGtTCAGGGTTCAAGTCTCTGTTTGGGCG Str: >>>.>>>..>>>>........<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<.<<<. chr19.trna10 (39902900-39902808) Length: 93 bp Type: Ile Anticodon: TAT at 35-37 (39902866-39902864) Score: 73.8 Possible intron: 39-57 (39902862-39902844) HMM Sc=45.60 Sec struct Sc=28.20 * | * | * | * | * | * | * | * | * | Seq: GCTCCAGTGGCGCAATCGGTtAGCGCGCGGTACTTATAtgacagtgcgagcggagcaATGCCGAGGtTGTGAGTTCGATCCTCACCTGGAGCA Str: >>>>>>>..>>>>.........<<<<.>>>>>..........................<<<<<.....>>>>>.......<<<<<<<<<<<<. chr19.trna11 (4724719-4724647) Length: 73 bp Type: Val Anticodon: CAC at 34-36 (4724686-4724684) Score: 79.2 HMM Sc=49.10 Sec struct Sc=30.10 * | * | * | * | * | * | * | Seq: GTTTCCGTAGTGTAGCGGTtATCACATTCGCCTCACACGCGAAAGGtCCCCGGTTCGATCCCGGGCGGAAACA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr19.trna12 (1383433-1383361) Length: 73 bp Type: Phe Anticodon: GAA at 34-36 (1383400-1383398) Score: 88.9 HMM Sc=68.40 Sec struct Sc=20.50 * | * | * | * | * | * | * | Seq: GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGtCCCTGGTTCGATCCCGGGTTTCGGCA Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chr20.trna1 (17855142-17855219) Length: 78 bp Type: Undet Anticodon: NNN at 0-0 (0-0) Score: 29.9 Filtered, Possible pseudogene: HMM Sc=34.50 Sec struct Sc=-4.60 * | * | * | * | * | * | * | * Seq: GGCAGTGTAGCCCAGAGGTtcaAGGGCATTCGCTCTGGTaTCAGAAGGgTCTGGGTTCAAATCCCTtgtGCACTGCTT Str: >>>>>>>..>>>>..........<<<<.>>.>.........<.<<.....>.>>>.......<<<....<<<<<<<<. chr20.trna2 (48952423-48952342) Length: 82 bp Type: Leu Anticodon: AAG at 35-37 (48952389-48952387) Score: 45.4 Filtered, Possible pseudogene: HMM Sc=41.50 Sec struct Sc=3.90 * | * | * | * | * | * | * | * | Seq: GGTAGGGTGGCCGAGCGGTctAAGGCACTGTATTAAGACTCCAGTCTCTTCAGAGGCATGGGTTTGAATCCCACTGCTGCCA Str: >>>>>.>..>>>...........<<<.>>>.>.......<.<<<.>>>>..<<<<...>>>>.......<<<<.<.<<<<<. chr21.trna1 (18827177-18827107) Length: 71 bp Type: Gly Anticodon: GCC at 33-35 (18827145-18827143) Score: 80.9 HMM Sc=60.10 Sec struct Sc=20.80 * | * | * | * | * | * | * | Seq: GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGTTCGATTCCCGGCCCATGCA Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<. chr22.trna1 (44546537-44546620) Length: 84 bp Type: SeC Anticodon: TCA at 36-38 (44546572-44546574) Score: 111.5 Filtered: HMM Sc=0.00 Sec struct Sc=0.00 * | * | * | * | * | * | * | * | Seq: GCTCGGATGATCCTCAGTGGTCTGGGGTGCAGGCTTCAAACCTGTAGCTGTCTAGTGACAGAGTGGTTCAATTCCACCTTTGTA Str: >>...>>.>..>>>>>>....<<<<<<>>>>>>.......<<<<<<.>>>>>....<<<<<.>>>>.......<<<<<.<<<<. chr22.trna2 (30704236-30704158) Length: 79 bp Type: Undet Anticodon: NNN at 0-0 (0-0) Score: 22.3 Filtered, Possible pseudogene: HMM Sc=21.40 Sec struct Sc=0.90 * | * | * | * | * | * | * | * Seq: GGCAGAGaagtgTAGTACAAGGGTcaagAGCATGAGCTGtagagtCAGTCAGgCCTGGGTTTGAGTCCCAGCTCTGCCA Str: >>>>>>>.......>>.>...........<.<<.....................>>>>>.......<<<<<<<<<<<<. chrX.trna2 (118737861-118737929) Length: 69 bp Type: Pro Anticodon: GGG at 34-36 (118737894-118737896) Score: 24.8 Filtered, Possible pseudogene: HMM Sc=20.60 Sec struct Sc=4.20 * | * | * | * | * | * | * Seq: GCAGCTGTGGCTCAGTGGAaAGAGCATCAGTCTGGGTATCAGAAGaCCTAGGTCCTAGcccCAGCTGTA Str: >>>>>>>..>>>>........<<<<.>>.>.........<.<<....>>>>>.<<<<<...<<<<<<<. chrX.trna3 (25280160-25280089) Length: 72 bp Type: Ser Anticodon: GGA at 34-36 (25280127-25280125) Score: 21.6 Filtered: HMM Sc=13.70 Sec struct Sc=7.90 * | * | * | * | * | * | * | Seq: AGTCAAGTGGTTTAGTGGAaAGAACATTGGATTGGAAGTCAAGAGGCCTGGATTCTTGCTCCAGCTTCACCA Str: .>>.>>>..>>>>........<<<<.>>.>>.......<<.<<....>>>>>.......<<<<<<<<.<<.. chrX.trna4 (18693101-18693029) Length: 73 bp Type: Val Anticodon: TAC at 34-36 (18693068-18693066) Score: 82.9 HMM Sc=54.70 Sec struct Sc=28.20 * | * | * | * | * | * | * | Seq: GGTTCCATAGTGTAGTGGTtATCACGTCTGCTTTACACGCAGAAGGtCCTGGGTTCGAGCCCCAGTGGAACCA Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chrX.trna5 (3833758-3833685) Length: 74 bp Type: Ile Anticodon: GAT at 35-37 (3833724-3833722) Score: 46.5 Filtered: HMM Sc=36.40 Sec struct Sc=10.10 * | * | * | * | * | * | * | Seq: GGTCGGTTATCTCAGTTGGTgAGCGCGTGGTGCTGATACCGCCATGGtCGCGGGCTTGATCCCCGCACCGGCCC Str: >>>>>>>...>.>.........<.<..>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chrX.trna6 (3833344-3833271) Length: 74 bp Type: Ile Anticodon: GAT at 35-37 (3833310-3833308) Score: 75.5 HMM Sc=50.20 Sec struct Sc=25.30 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTaAGAGCGTGGTGCTGATAACACCAAGGtCGCGGGCTCGACTCCCGCACCGGCCA Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chrX.trna7 (3795329-3795256) Length: 74 bp Type: Ile Anticodon: GAT at 35-37 (3795295-3795293) Score: 46.5 Filtered: HMM Sc=36.40 Sec struct Sc=10.10 * | * | * | * | * | * | * | Seq: GGTCGGTTATCTCAGTTGGTgAGCGCGTGGTGCTGATACCGCCATGGtCGCGGGCTTGATCCCCGCACCGGCCC Str: >>>>>>>...>.>.........<.<..>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chrX.trna8 (3794915-3794842) Length: 74 bp Type: Ile Anticodon: GAT at 35-37 (3794881-3794879) Score: 75.5 HMM Sc=50.20 Sec struct Sc=25.30 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTaAGAGCGTGGTGCTGATAACACCAAGGtCGCGGGCTCGACTCCCGCACCGGCCA Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<. chrX.trna9 (3756905-3756832) Length: 74 bp Type: Ile Anticodon: GAT at 35-37 (3756871-3756869) Score: 38.1 Filtered, Possible pseudogene: HMM Sc=34.50 Sec struct Sc=3.60 * | * | * | * | * | * | * | Seq: GGTCGGTTATCTCAGTTGGTgAGCGCGTGGTGCTGATACCGCCATGGtCGCAGGCTTGATCCCCGCACCGGCCC Str: >>>>>>>...>.>.........<.<..>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<. chrX.trna10 (3756491-3756418) Length: 74 bp Type: Ile Anticodon: GAT at 35-37 (3756457-3756455) Score: 75.5 HMM Sc=50.20 Sec struct Sc=25.30 * | * | * | * | * | * | * | Seq: GGCCGGTTAGCTCAGTTGGTaAGAGCGTGGTGCTGATAACACCAAGGtCGCGGGCTCGACTCCCGCACCGGCCA Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.