bsub -o log_step1.txt -q long -W 4000 -R rusage[mem=20048] "module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3.2_new && cellranger mkgtf V4.3.2.gtf V4.3.2.validated.gtf"

bsub -o log_step2.txt -q long -W 4000 -R rusage[mem=20048] "module load cellranger/3.0.2 && cd /share/data/umw_biocore/genome_data/cellranger/zebrafish/GRCz11_v4.3.2_new && cellranger mkref --genome=GRCz11_v4.3.2 --fasta=danRer11.primary.fa --genes=V4.3.2.validated.gtf --ref-version=1.0.0"