[2023-03-28 15:08:30.890] [puff::index::jointLog] [info] Running fixFasta
[2023-03-28 15:08:30.904] [puff::index::jointLog] [warning] Entry with header [NR_030099.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.904] [puff::index::jointLog] [warning] Entry with header [rna76], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.905] [puff::index::jointLog] [warning] Entry with header [NR_039328.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.905] [puff::index::jointLog] [warning] Entry with header [rna98], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.905] [puff::index::jointLog] [warning] Entry with header [rna99], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [NR_030045.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [rna161], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [rna162], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [NR_030016.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [rna164], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [rna165], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [NR_030019.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [rna167], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [rna168], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [NR_030015.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [rna170], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [rna171], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [NR_030012.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [rna173], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [NR_030009.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [rna175], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.910] [puff::index::jointLog] [warning] Entry with header [rna176], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.992] [puff::index::jointLog] [warning] Entry with header [NR_030122.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:30.992] [puff::index::jointLog] [warning] Entry with header [rna945], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.016] [puff::index::jointLog] [warning] Entry with header [NR_030522.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.016] [puff::index::jointLog] [warning] Entry with header [rna1169], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.022] [puff::index::jointLog] [warning] Entry with header [NR_030517.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.022] [puff::index::jointLog] [warning] Entry with header [rna1257], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.032] [puff::index::jointLog] [warning] Entry with header [NR_030668.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.032] [puff::index::jointLog] [warning] Entry with header [rna1395], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.057] [puff::index::jointLog] [warning] Entry with header [NR_030007.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.057] [puff::index::jointLog] [warning] Entry with header [rna1745], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.057] [puff::index::jointLog] [warning] Entry with header [NR_030003.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.057] [puff::index::jointLog] [warning] Entry with header [rna1747], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.057] [puff::index::jointLog] [warning] Entry with header [rna1748], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.090] [puff::index::jointLog] [warning] Entry with header [NR_030502.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.090] [puff::index::jointLog] [warning] Entry with header [rna2224], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.119] [puff::index::jointLog] [warning] Entry with header [NR_029954.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.119] [puff::index::jointLog] [warning] Entry with header [rna31091], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.140] [puff::index::jointLog] [warning] Entry with header [NR_029938.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.140] [puff::index::jointLog] [warning] Entry with header [rna31380], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.148] [puff::index::jointLog] [warning] Entry with header [NR_030024.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.148] [puff::index::jointLog] [warning] Entry with header [rna31536], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.148] [puff::index::jointLog] [warning] Entry with header [NR_030034.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.148] [puff::index::jointLog] [warning] Entry with header [rna31538], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.148] [puff::index::jointLog] [warning] Entry with header [NR_030027.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.148] [puff::index::jointLog] [warning] Entry with header [rna31540], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.154] [puff::index::jointLog] [warning] Entry with header [NR_030078.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.154] [puff::index::jointLog] [warning] Entry with header [rna31598], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.154] [puff::index::jointLog] [warning] Entry with header [rna31599], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.154] [puff::index::jointLog] [warning] Entry with header [NR_030127.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.154] [puff::index::jointLog] [warning] Entry with header [rna31601], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.154] [puff::index::jointLog] [warning] Entry with header [rna31602], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.155] [puff::index::jointLog] [warning] Entry with header [NR_030123.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.155] [puff::index::jointLog] [warning] Entry with header [rna31619], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.185] [puff::index::jointLog] [warning] Entry with header [NR_030107.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.185] [puff::index::jointLog] [warning] Entry with header [rna32001], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.185] [puff::index::jointLog] [warning] Entry with header [NR_029930.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.185] [puff::index::jointLog] [warning] Entry with header [rna32003], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.186] [puff::index::jointLog] [warning] Entry with header [NR_030020.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.186] [puff::index::jointLog] [warning] Entry with header [rna32023], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.204] [puff::index::jointLog] [warning] Entry with header [NR_045237.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.204] [puff::index::jointLog] [warning] Entry with header [rna32251], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.204] [puff::index::jointLog] [warning] Entry with header [NR_030125.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.205] [puff::index::jointLog] [warning] Entry with header [rna32253], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.205] [puff::index::jointLog] [warning] Entry with header [NR_030076.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.205] [puff::index::jointLog] [warning] Entry with header [rna32255], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.219] [puff::index::jointLog] [warning] Entry with header [NR_030081.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.219] [puff::index::jointLog] [warning] Entry with header [rna32388], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.219] [puff::index::jointLog] [warning] Entry with header [NR_030648.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.219] [puff::index::jointLog] [warning] Entry with header [rna32390], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.226] [puff::index::jointLog] [warning] Entry with header [NR_030069.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.226] [puff::index::jointLog] [warning] Entry with header [rna32512], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.226] [puff::index::jointLog] [warning] Entry with header [rna32513], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.226] [puff::index::jointLog] [warning] Entry with header [NR_029984.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.226] [puff::index::jointLog] [warning] Entry with header [rna32515], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.226] [puff::index::jointLog] [warning] Entry with header [rna32516], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.226] [puff::index::jointLog] [warning] Entry with header [NR_030051.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.226] [puff::index::jointLog] [warning] Entry with header [rna32518], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.238] [puff::index::jointLog] [warning] Entry with header [NR_045221.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.238] [puff::index::jointLog] [warning] Entry with header [rna32763], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.238] [puff::index::jointLog] [warning] Entry with header [rna32764], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.250] [puff::index::jointLog] [warning] Entry with header [NR_030653.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.250] [puff::index::jointLog] [warning] Entry with header [rna32996], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.255] [puff::index::jointLog] [warning] Entry with header [NR_030505.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.255] [puff::index::jointLog] [warning] Entry with header [rna33088], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.311] [puff::index::jointLog] [warning] Entry with header [NR_030503.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.311] [puff::index::jointLog] [warning] Entry with header [rna33917], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.311] [puff::index::jointLog] [warning] Entry with header [rna33918], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.313] [puff::index::jointLog] [warning] Entry with header [NR_030507.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.313] [puff::index::jointLog] [warning] Entry with header [rna33943], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.318] [puff::index::jointLog] [warning] Entry with header [NR_029987.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.318] [puff::index::jointLog] [warning] Entry with header [rna34021], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.318] [puff::index::jointLog] [warning] Entry with header [NR_029976.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.318] [puff::index::jointLog] [warning] Entry with header [rna34023], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.349] [puff::index::jointLog] [warning] Entry with header [NR_034195.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.349] [puff::index::jointLog] [warning] Entry with header [rna34388], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.379] [puff::index::jointLog] [warning] Entry with header [NR_030660.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.379] [puff::index::jointLog] [warning] Entry with header [rna34917], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.408] [puff::index::jointLog] [warning] Entry with header [NR_030057.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.408] [puff::index::jointLog] [warning] Entry with header [rna35306], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.408] [puff::index::jointLog] [warning] Entry with header [rna35307], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.410] [puff::index::jointLog] [warning] Entry with header [NR_030663.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.410] [puff::index::jointLog] [warning] Entry with header [rna35345], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.410] [puff::index::jointLog] [warning] Entry with header [NR_045235.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.410] [puff::index::jointLog] [warning] Entry with header [rna35348], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.445] [puff::index::jointLog] [warning] Entry with header [NR_029922.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.445] [puff::index::jointLog] [warning] Entry with header [rna35748], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.445] [puff::index::jointLog] [warning] Entry with header [rna35749], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.463] [puff::index::jointLog] [warning] Entry with header [NR_034279.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.463] [puff::index::jointLog] [warning] Entry with header [rna35971], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.480] [puff::index::jointLog] [warning] Entry with header [NR_034207.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.480] [puff::index::jointLog] [warning] Entry with header [rna36118], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.532] [puff::index::jointLog] [warning] Entry with header [NR_039204.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.532] [puff::index::jointLog] [warning] Entry with header [rna37072], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.542] [puff::index::jointLog] [warning] Entry with header [NR_030056.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.542] [puff::index::jointLog] [warning] Entry with header [rna37194], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.584] [puff::index::jointLog] [warning] Entry with header [NR_030044.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.584] [puff::index::jointLog] [warning] Entry with header [rna37744], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.584] [puff::index::jointLog] [warning] Entry with header [rna37745], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.584] [puff::index::jointLog] [warning] Entry with header [NR_030042.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.584] [puff::index::jointLog] [warning] Entry with header [rna37747], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.584] [puff::index::jointLog] [warning] Entry with header [rna37748], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.646] [puff::index::jointLog] [warning] Entry with header [NR_030114.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.646] [puff::index::jointLog] [warning] Entry with header [rna38643], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.646] [puff::index::jointLog] [warning] Entry with header [rna38644], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.649] [puff::index::jointLog] [warning] Entry with header [NR_030048.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.649] [puff::index::jointLog] [warning] Entry with header [rna38704], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.649] [puff::index::jointLog] [warning] Entry with header [NR_030018.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.649] [puff::index::jointLog] [warning] Entry with header [rna38706], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.649] [puff::index::jointLog] [warning] Entry with header [NR_030028.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.649] [puff::index::jointLog] [warning] Entry with header [rna38708], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.649] [puff::index::jointLog] [warning] Entry with header [rna38709], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.657] [puff::index::jointLog] [warning] Entry with header [NR_039355.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.657] [puff::index::jointLog] [warning] Entry with header [rna38859], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.695] [puff::index::jointLog] [warning] Entry with header [NR_030121.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.695] [puff::index::jointLog] [warning] Entry with header [rna39491], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.697] [puff::index::jointLog] [warning] Entry with header [NR_030143.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.697] [puff::index::jointLog] [warning] Entry with header [rna39516], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.697] [puff::index::jointLog] [warning] Entry with header [rna39517], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.714] [puff::index::jointLog] [warning] Entry with header [NR_030129.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.714] [puff::index::jointLog] [warning] Entry with header [rna39722], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.714] [puff::index::jointLog] [warning] Entry with header [rna39723], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.714] [puff::index::jointLog] [warning] Entry with header [NR_030017.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.714] [puff::index::jointLog] [warning] Entry with header [rna39725], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.714] [puff::index::jointLog] [warning] Entry with header [rna39726], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.714] [puff::index::jointLog] [warning] Entry with header [NR_030011.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.714] [puff::index::jointLog] [warning] Entry with header [rna39728], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.714] [puff::index::jointLog] [warning] Entry with header [rna39729], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.714] [puff::index::jointLog] [warning] Entry with header [NR_030014.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.714] [puff::index::jointLog] [warning] Entry with header [rna39731], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.715] [puff::index::jointLog] [warning] Entry with header [NR_030142.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.715] [puff::index::jointLog] [warning] Entry with header [rna39741], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.715] [puff::index::jointLog] [warning] Entry with header [rna39742], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.732] [puff::index::jointLog] [warning] Entry with header [NR_045230.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.732] [puff::index::jointLog] [warning] Entry with header [rna40030], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.732] [puff::index::jointLog] [warning] Entry with header [NR_039203.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.732] [puff::index::jointLog] [warning] Entry with header [rna40032], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.775] [puff::index::jointLog] [warning] Entry with header [NR_030516.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.775] [puff::index::jointLog] [warning] Entry with header [rna40480], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.775] [puff::index::jointLog] [warning] Entry with header [NR_030006.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.775] [puff::index::jointLog] [warning] Entry with header [rna40482], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.798] [puff::index::jointLog] [warning] Entry with header [NR_030091.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.798] [puff::index::jointLog] [warning] Entry with header [rna40932], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.804] [puff::index::jointLog] [warning] Entry with header [NR_030021.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.804] [puff::index::jointLog] [warning] Entry with header [rna41092], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.823] [puff::index::jointLog] [warning] Entry with header [NR_030052.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.823] [puff::index::jointLog] [warning] Entry with header [rna41376], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.823] [puff::index::jointLog] [warning] Entry with header [rna41377], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.823] [puff::index::jointLog] [warning] Entry with header [NR_029977.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.823] [puff::index::jointLog] [warning] Entry with header [rna41379], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.823] [puff::index::jointLog] [warning] Entry with header [NR_030067.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.823] [puff::index::jointLog] [warning] Entry with header [rna41381], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.823] [puff::index::jointLog] [warning] Entry with header [rna41382], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.834] [puff::index::jointLog] [warning] Entry with header [NR_030022.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.834] [puff::index::jointLog] [warning] Entry with header [rna41540], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.834] [puff::index::jointLog] [warning] Entry with header [rna41541], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.836] [puff::index::jointLog] [warning] Entry with header [NR_030247.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.836] [puff::index::jointLog] [warning] Entry with header [rna41582], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.836] [puff::index::jointLog] [warning] Entry with header [NR_030080.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.836] [puff::index::jointLog] [warning] Entry with header [rna41584], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.836] [puff::index::jointLog] [warning] Entry with header [rna41585], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.847] [puff::index::jointLog] [warning] Entry with header [NR_030050.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.847] [puff::index::jointLog] [warning] Entry with header [rna41755], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.847] [puff::index::jointLog] [warning] Entry with header [NR_029983.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.847] [puff::index::jointLog] [warning] Entry with header [rna41757], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.847] [puff::index::jointLog] [warning] Entry with header [rna41758], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.847] [puff::index::jointLog] [warning] Entry with header [NR_030070.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.847] [puff::index::jointLog] [warning] Entry with header [rna41760], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.847] [puff::index::jointLog] [warning] Entry with header [rna41761], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.943] [puff::index::jointLog] [warning] Entry with header [NR_030146.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.943] [puff::index::jointLog] [warning] Entry with header [rna43035], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.949] [puff::index::jointLog] [warning] Entry with header [NR_030501.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.950] [puff::index::jointLog] [warning] Entry with header [rna43126], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.953] [puff::index::jointLog] [warning] Entry with header [NR_030664.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.954] [puff::index::jointLog] [warning] Entry with header [rna43214], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.969] [puff::index::jointLog] [warning] Entry with header [NR_029985.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.969] [puff::index::jointLog] [warning] Entry with header [rna43425], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.969] [puff::index::jointLog] [warning] Entry with header [rna43426], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.969] [puff::index::jointLog] [warning] Entry with header [NR_030065.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.969] [puff::index::jointLog] [warning] Entry with header [rna43428], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.971] [puff::index::jointLog] [warning] Entry with header [NR_030043.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.971] [puff::index::jointLog] [warning] Entry with header [rna43467], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.971] [puff::index::jointLog] [warning] Entry with header [NR_030041.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.971] [puff::index::jointLog] [warning] Entry with header [rna43469], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.983] [puff::index::jointLog] [warning] Entry with header [NR_029995.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.983] [puff::index::jointLog] [warning] Entry with header [rna43674], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:31.983] [puff::index::jointLog] [warning] Entry with header [rna43675], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.024] [puff::index::jointLog] [warning] Entry with header [NR_030047.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.024] [puff::index::jointLog] [warning] Entry with header [rna44315], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.024] [puff::index::jointLog] [warning] Entry with header [rna44316], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.045] [puff::index::jointLog] [warning] Entry with header [NR_030656.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.045] [puff::index::jointLog] [warning] Entry with header [rna44625], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.045] [puff::index::jointLog] [warning] Entry with header [rna44626], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.062] [puff::index::jointLog] [warning] Entry with header [NR_030085.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.062] [puff::index::jointLog] [warning] Entry with header [rna44962], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.063] [puff::index::jointLog] [warning] Entry with header [rna44963], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.063] [puff::index::jointLog] [warning] Entry with header [NR_030118.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.063] [puff::index::jointLog] [warning] Entry with header [rna44965], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.112] [puff::index::jointLog] [warning] Entry with header [NR_030652.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.112] [puff::index::jointLog] [warning] Entry with header [rna45503], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.112] [puff::index::jointLog] [warning] Entry with header [rna45504], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.128] [puff::index::jointLog] [warning] Entry with header [NR_030140.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.128] [puff::index::jointLog] [warning] Entry with header [rna45657], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.130] [puff::index::jointLog] [warning] Entry with header [NR_030655.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.130] [puff::index::jointLog] [warning] Entry with header [rna45711], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.142] [puff::index::jointLog] [warning] Entry with header [NR_030062.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.142] [puff::index::jointLog] [warning] Entry with header [rna45928], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.142] [puff::index::jointLog] [warning] Entry with header [rna45929], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.194] [puff::index::jointLog] [warning] Entry with header [NR_045255.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.194] [puff::index::jointLog] [warning] Entry with header [rna46347], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.194] [puff::index::jointLog] [warning] Entry with header [rna46348], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.194] [puff::index::jointLog] [warning] Entry with header [NR_048925.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.194] [puff::index::jointLog] [warning] Entry with header [rna46354], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.194] [puff::index::jointLog] [warning] Entry with header [rna46355], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.194] [puff::index::jointLog] [warning] Entry with header [NR_048926.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.194] [puff::index::jointLog] [warning] Entry with header [rna46357], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.194] [puff::index::jointLog] [warning] Entry with header [rna46358], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.206] [puff::index::jointLog] [warning] Entry with header [NR_029933.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.206] [puff::index::jointLog] [warning] Entry with header [rna46557], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.206] [puff::index::jointLog] [warning] Entry with header [rna46558], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.264] [puff::index::jointLog] [warning] Entry with header [NR_030087.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.264] [puff::index::jointLog] [warning] Entry with header [rna47420], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.264] [puff::index::jointLog] [warning] Entry with header [rna47421], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.282] [puff::index::jointLog] [warning] Entry with header [NR_030101.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.282] [puff::index::jointLog] [warning] Entry with header [rna47733], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.327] [puff::index::jointLog] [warning] Entry with header [NR_039360.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.327] [puff::index::jointLog] [warning] Entry with header [rna48332], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.327] [puff::index::jointLog] [warning] Entry with header [rna48333], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.360] [puff::index::jointLog] [warning] Entry with header [NR_039149.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.360] [puff::index::jointLog] [warning] Entry with header [rna48791], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.360] [puff::index::jointLog] [warning] Entry with header [rna48792], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.378] [puff::index::jointLog] [warning] Entry with header [NR_029986.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.378] [puff::index::jointLog] [warning] Entry with header [rna49057], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.378] [puff::index::jointLog] [warning] Entry with header [rna49058], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.378] [puff::index::jointLog] [warning] Entry with header [NR_030066.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.378] [puff::index::jointLog] [warning] Entry with header [rna49060], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.400] [puff::index::jointLog] [warning] Entry with header [NR_030124.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.400] [puff::index::jointLog] [warning] Entry with header [rna49406], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.400] [puff::index::jointLog] [warning] Entry with header [rna49407], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.402] [puff::index::jointLog] [warning] Entry with header [NR_030109.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.402] [puff::index::jointLog] [warning] Entry with header [rna49449], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.403] [puff::index::jointLog] [warning] Entry with header [rna49450], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.429] [puff::index::jointLog] [warning] Entry with header [NR_105066.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.429] [puff::index::jointLog] [warning] Entry with header [rna49796], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.439] [puff::index::jointLog] [warning] Entry with header [NR_029929.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.439] [puff::index::jointLog] [warning] Entry with header [rna49995], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.472] [puff::index::jointLog] [warning] Entry with header [NR_030244.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.472] [puff::index::jointLog] [warning] Entry with header [rna50150], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.487] [puff::index::jointLog] [warning] Entry with header [NR_030073.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.487] [puff::index::jointLog] [warning] Entry with header [rna50307], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.503] [puff::index::jointLog] [warning] Entry with header [NR_030145.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.503] [puff::index::jointLog] [warning] Entry with header [rna2668], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.503] [puff::index::jointLog] [warning] Entry with header [rna2669], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.508] [puff::index::jointLog] [warning] Entry with header [NR_030083.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.508] [puff::index::jointLog] [warning] Entry with header [rna2747], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.508] [puff::index::jointLog] [warning] Entry with header [rna2748], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.508] [puff::index::jointLog] [warning] Entry with header [NR_029992.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.508] [puff::index::jointLog] [warning] Entry with header [rna2750], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.549] [puff::index::jointLog] [warning] Entry with header [NR_030086.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.549] [puff::index::jointLog] [warning] Entry with header [rna3354], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.549] [puff::index::jointLog] [warning] Entry with header [rna3355], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.553] [puff::index::jointLog] [warning] Entry with header [NR_039139.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.553] [puff::index::jointLog] [warning] Entry with header [rna3429], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.553] [puff::index::jointLog] [warning] Entry with header [rna3430], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.564] [puff::index::jointLog] [warning] Entry with header [NR_030519.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.564] [puff::index::jointLog] [warning] Entry with header [rna3580], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.572] [puff::index::jointLog] [warning] Entry with header [NR_030059.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.572] [puff::index::jointLog] [warning] Entry with header [rna3707], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.593] [puff::index::jointLog] [warning] Entry with header [NR_030023.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.593] [puff::index::jointLog] [warning] Entry with header [rna4077], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.593] [puff::index::jointLog] [warning] Entry with header [rna4078], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.593] [puff::index::jointLog] [warning] Entry with header [NR_030032.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.593] [puff::index::jointLog] [warning] Entry with header [rna4080], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.593] [puff::index::jointLog] [warning] Entry with header [rna4081], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.598] [puff::index::jointLog] [warning] Entry with header [NR_030658.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.598] [puff::index::jointLog] [warning] Entry with header [rna4153], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.628] [puff::index::jointLog] [warning] Entry with header [NR_029925.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.628] [puff::index::jointLog] [warning] Entry with header [rna4582], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.650] [puff::index::jointLog] [warning] Entry with header [NR_105069.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.650] [puff::index::jointLog] [warning] Entry with header [rna4979], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.650] [puff::index::jointLog] [warning] Entry with header [rna4980], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.654] [puff::index::jointLog] [warning] Entry with header [NR_030000.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.654] [puff::index::jointLog] [warning] Entry with header [rna5089], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.654] [puff::index::jointLog] [warning] Entry with header [rna5090], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.673] [puff::index::jointLog] [warning] Entry with header [NR_105067.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.673] [puff::index::jointLog] [warning] Entry with header [rna50741], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.673] [puff::index::jointLog] [warning] Entry with header [rna50742], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.686] [puff::index::jointLog] [warning] Entry with header [NR_030742.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.686] [puff::index::jointLog] [warning] Entry with header [rna51035], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.686] [puff::index::jointLog] [warning] Entry with header [rna51036], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.686] [puff::index::jointLog] [warning] Entry with header [NR_030743.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.686] [puff::index::jointLog] [warning] Entry with header [rna51038], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.692] [puff::index::jointLog] [warning] Entry with header [NR_030084.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.692] [puff::index::jointLog] [warning] Entry with header [rna51156], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.692] [puff::index::jointLog] [warning] Entry with header [rna51157], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.692] [puff::index::jointLog] [warning] Entry with header [NR_030117.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.692] [puff::index::jointLog] [warning] Entry with header [rna51159], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.692] [puff::index::jointLog] [warning] Entry with header [rna51160], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.721] [puff::index::jointLog] [warning] Entry with header [NR_030115.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.721] [puff::index::jointLog] [warning] Entry with header [rna51676], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.721] [puff::index::jointLog] [warning] Entry with header [rna51677], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.789] [puff::index::jointLog] [warning] Entry with header [NR_030060.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.789] [puff::index::jointLog] [warning] Entry with header [rna52212], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.789] [puff::index::jointLog] [warning] Entry with header [rna52213], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.809] [puff::index::jointLog] [warning] Entry with header [NR_030665.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.809] [puff::index::jointLog] [warning] Entry with header [rna52598], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.844] [puff::index::jointLog] [warning] Entry with header [NR_030659.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.844] [puff::index::jointLog] [warning] Entry with header [rna53227], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.844] [puff::index::jointLog] [warning] Entry with header [rna53228], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.852] [puff::index::jointLog] [warning] Entry with header [NR_030058.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.852] [puff::index::jointLog] [warning] Entry with header [rna53343], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.947] [puff::index::jointLog] [warning] Entry with header [NR_034203.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.947] [puff::index::jointLog] [warning] Entry with header [rna55081], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.953] [puff::index::jointLog] [warning] Entry with header [NR_030657.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.953] [puff::index::jointLog] [warning] Entry with header [rna55178], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.990] [puff::index::jointLog] [warning] Entry with header [NR_045223.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.990] [puff::index::jointLog] [warning] Entry with header [rna55727], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.990] [puff::index::jointLog] [warning] Entry with header [NR_045227.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.990] [puff::index::jointLog] [warning] Entry with header [rna55729], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.990] [puff::index::jointLog] [warning] Entry with header [NR_045225.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:32.990] [puff::index::jointLog] [warning] Entry with header [rna55731], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.016] [puff::index::jointLog] [warning] Entry with header [NR_030072.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.016] [puff::index::jointLog] [warning] Entry with header [rna56223], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.016] [puff::index::jointLog] [warning] Entry with header [rna56224], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.027] [puff::index::jointLog] [warning] Entry with header [NR_030666.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.027] [puff::index::jointLog] [warning] Entry with header [rna56407], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.032] [puff::index::jointLog] [warning] Entry with header [NR_029996.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.032] [puff::index::jointLog] [warning] Entry with header [rna56484], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.032] [puff::index::jointLog] [warning] Entry with header [rna56485], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.048] [puff::index::jointLog] [warning] Entry with header [NR_029937.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.048] [puff::index::jointLog] [warning] Entry with header [rna56835], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.048] [puff::index::jointLog] [warning] Entry with header [rna56836], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.050] [puff::index::jointLog] [warning] Entry with header [NR_030506.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.050] [puff::index::jointLog] [warning] Entry with header [rna56881], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.051] [puff::index::jointLog] [warning] Entry with header [rna56882], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.060] [puff::index::jointLog] [warning] Entry with header [NR_034185.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.060] [puff::index::jointLog] [warning] Entry with header [rna57073], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.060] [puff::index::jointLog] [warning] Entry with header [NR_034184.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.060] [puff::index::jointLog] [warning] Entry with header [rna57075], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.060] [puff::index::jointLog] [warning] Entry with header [NR_030119.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.060] [puff::index::jointLog] [warning] Entry with header [rna57077], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.091] [puff::index::jointLog] [warning] Entry with header [NR_039088.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.091] [puff::index::jointLog] [warning] Entry with header [rna57601], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.091] [puff::index::jointLog] [warning] Entry with header [NR_039095.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.091] [puff::index::jointLog] [warning] Entry with header [rna57603], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.099] [puff::index::jointLog] [warning] Entry with header [NR_030082.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.099] [puff::index::jointLog] [warning] Entry with header [rna57675], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.099] [puff::index::jointLog] [warning] Entry with header [rna57676], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.099] [puff::index::jointLog] [warning] Entry with header [NR_029993.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.099] [puff::index::jointLog] [warning] Entry with header [rna57678], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.111] [puff::index::jointLog] [warning] Entry with header [NR_030650.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.111] [puff::index::jointLog] [warning] Entry with header [rna57850], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.111] [puff::index::jointLog] [warning] Entry with header [rna57851], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.121] [puff::index::jointLog] [warning] Entry with header [NR_030063.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.121] [puff::index::jointLog] [warning] Entry with header [rna58008], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.121] [puff::index::jointLog] [warning] Entry with header [rna58009], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.122] [puff::index::jointLog] [warning] Entry with header [NR_045228.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.122] [puff::index::jointLog] [warning] Entry with header [rna58046], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.123] [puff::index::jointLog] [warning] Entry with header [NR_029988.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.123] [puff::index::jointLog] [warning] Entry with header [rna58056], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.142] [puff::index::jointLog] [warning] Entry with header [NR_029924.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.142] [puff::index::jointLog] [warning] Entry with header [rna58299], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.147] [puff::index::jointLog] [warning] Entry with header [NR_030112.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.147] [puff::index::jointLog] [warning] Entry with header [rna58349], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.147] [puff::index::jointLog] [warning] Entry with header [rna58350], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.147] [puff::index::jointLog] [warning] Entry with header [NR_030111.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.147] [puff::index::jointLog] [warning] Entry with header [rna58352], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.147] [puff::index::jointLog] [warning] Entry with header [rna58353], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.147] [puff::index::jointLog] [warning] Entry with header [NR_029964.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.147] [puff::index::jointLog] [warning] Entry with header [rna58355], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.147] [puff::index::jointLog] [warning] Entry with header [NR_105070.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.147] [puff::index::jointLog] [warning] Entry with header [rna58357], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.147] [puff::index::jointLog] [warning] Entry with header [rna58358], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.150] [puff::index::jointLog] [warning] Entry with header [NR_030031.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.150] [puff::index::jointLog] [warning] Entry with header [rna58400], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.173] [puff::index::jointLog] [warning] Entry with header [NR_029989.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.173] [puff::index::jointLog] [warning] Entry with header [rna58612], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.173] [puff::index::jointLog] [warning] Entry with header [NR_029990.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.173] [puff::index::jointLog] [warning] Entry with header [rna58614], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.192] [puff::index::jointLog] [warning] Entry with header [NR_029935.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.192] [puff::index::jointLog] [warning] Entry with header [rna58829], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.192] [puff::index::jointLog] [warning] Entry with header [rna58830], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.198] [puff::index::jointLog] [warning] Entry with header [NR_034183.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.198] [puff::index::jointLog] [warning] Entry with header [rna58939], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.198] [puff::index::jointLog] [warning] Entry with header [NR_034190.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.198] [puff::index::jointLog] [warning] Entry with header [rna58950], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.198] [puff::index::jointLog] [warning] Entry with header [rna58951], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.200] [puff::index::jointLog] [warning] Entry with header [NR_030654.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.200] [puff::index::jointLog] [warning] Entry with header [rna58985], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.246] [puff::index::jointLog] [warning] Entry with header [NR_105068.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.246] [puff::index::jointLog] [warning] Entry with header [rna59690], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.262] [puff::index::jointLog] [warning] Entry with header [NR_030030.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.262] [puff::index::jointLog] [warning] Entry with header [rna59944], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.272] [puff::index::jointLog] [warning] Entry with header [NR_030061.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.272] [puff::index::jointLog] [warning] Entry with header [rna60113], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.272] [puff::index::jointLog] [warning] Entry with header [rna60114], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.279] [puff::index::jointLog] [warning] Entry with header [NR_030508.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.279] [puff::index::jointLog] [warning] Entry with header [rna60218], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.281] [puff::index::jointLog] [warning] Entry with header [rna60219], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.281] [puff::index::jointLog] [warning] Entry with header [NR_030509.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.281] [puff::index::jointLog] [warning] Entry with header [rna60221], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.293] [puff::index::jointLog] [warning] Entry with header [NR_045229.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.293] [puff::index::jointLog] [warning] Entry with header [rna60389], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.293] [puff::index::jointLog] [warning] Entry with header [rna60390], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.312] [puff::index::jointLog] [warning] Entry with header [NR_030518.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.312] [puff::index::jointLog] [warning] Entry with header [rna60685], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.312] [puff::index::jointLog] [warning] Entry with header [rna60686], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.327] [puff::index::jointLog] [warning] Entry with header [NR_029991.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.327] [puff::index::jointLog] [warning] Entry with header [rna60943], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.347] [puff::index::jointLog] [warning] Entry with header [NR_029997.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.347] [puff::index::jointLog] [warning] Entry with header [rna61247], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.347] [puff::index::jointLog] [warning] Entry with header [rna61248], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.354] [puff::index::jointLog] [warning] Entry with header [NR_029920.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.354] [puff::index::jointLog] [warning] Entry with header [rna61344], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.393] [puff::index::jointLog] [warning] Entry with header [NR_029936.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.393] [puff::index::jointLog] [warning] Entry with header [rna62010], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.393] [puff::index::jointLog] [warning] Entry with header [rna62011], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.402] [puff::index::jointLog] [warning] Entry with header [NR_030401.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.402] [puff::index::jointLog] [warning] Entry with header [rna62170], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.409] [puff::index::jointLog] [warning] Entry with header [NR_030102.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.409] [puff::index::jointLog] [warning] Entry with header [rna62268], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.412] [puff::index::jointLog] [warning] Entry with header [NR_030088.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.412] [puff::index::jointLog] [warning] Entry with header [rna62318], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.412] [puff::index::jointLog] [warning] Entry with header [rna62319], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.458] [puff::index::jointLog] [warning] Entry with header [NR_048932.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.458] [puff::index::jointLog] [warning] Entry with header [rna5883], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.458] [puff::index::jointLog] [warning] Entry with header [rna5884], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.458] [puff::index::jointLog] [warning] Entry with header [NR_045226.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.458] [puff::index::jointLog] [warning] Entry with header [rna5886], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.458] [puff::index::jointLog] [warning] Entry with header [rna5887], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.458] [puff::index::jointLog] [warning] Entry with header [NR_034193.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.458] [puff::index::jointLog] [warning] Entry with header [rna5889], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.491] [puff::index::jointLog] [warning] Entry with header [NR_030110.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.491] [puff::index::jointLog] [warning] Entry with header [rna6361], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.492] [puff::index::jointLog] [warning] Entry with header [NR_030001.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.492] [puff::index::jointLog] [warning] Entry with header [rna6379], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.492] [puff::index::jointLog] [warning] Entry with header [rna6380], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.493] [puff::index::jointLog] [warning] Entry with header [NR_030095.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.493] [puff::index::jointLog] [warning] Entry with header [rna6393], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.523] [puff::index::jointLog] [warning] Entry with header [NR_030094.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.523] [puff::index::jointLog] [warning] Entry with header [rna6886], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.536] [puff::index::jointLog] [warning] Entry with header [NR_030100.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.536] [puff::index::jointLog] [warning] Entry with header [rna7012], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.536] [puff::index::jointLog] [warning] Entry with header [rna7013], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.542] [puff::index::jointLog] [warning] Entry with header [NR_030104.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.542] [puff::index::jointLog] [warning] Entry with header [rna7099], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.542] [puff::index::jointLog] [warning] Entry with header [rna7100], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.542] [puff::index::jointLog] [warning] Entry with header [NR_030131.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.542] [puff::index::jointLog] [warning] Entry with header [rna7102], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.565] [puff::index::jointLog] [warning] Entry with header [NR_030106.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.565] [puff::index::jointLog] [warning] Entry with header [rna7616], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.565] [puff::index::jointLog] [warning] Entry with header [rna7617], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.565] [puff::index::jointLog] [warning] Entry with header [NR_030130.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.565] [puff::index::jointLog] [warning] Entry with header [rna7619], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.567] [puff::index::jointLog] [warning] Entry with header [NR_030667.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.567] [puff::index::jointLog] [warning] Entry with header [rna7662], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.571] [puff::index::jointLog] [warning] Entry with header [NR_029932.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.571] [puff::index::jointLog] [warning] Entry with header [rna7724], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.571] [puff::index::jointLog] [warning] Entry with header [rna7725], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.694] [puff::index::jointLog] [warning] Entry with header [NR_030039.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.694] [puff::index::jointLog] [warning] Entry with header [rna9101], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.694] [puff::index::jointLog] [warning] Entry with header [NR_030037.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.694] [puff::index::jointLog] [warning] Entry with header [rna9103], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.701] [puff::index::jointLog] [warning] Entry with header [NR_030510.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.701] [puff::index::jointLog] [warning] Entry with header [rna9216], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.707] [puff::index::jointLog] [warning] Entry with header [NR_029928.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.707] [puff::index::jointLog] [warning] Entry with header [rna9302], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.707] [puff::index::jointLog] [warning] Entry with header [rna9303], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.707] [puff::index::jointLog] [warning] Entry with header [NR_030049.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.707] [puff::index::jointLog] [warning] Entry with header [rna9305], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.707] [puff::index::jointLog] [warning] Entry with header [rna9306], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.707] [puff::index::jointLog] [warning] Entry with header [NR_029927.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.707] [puff::index::jointLog] [warning] Entry with header [rna9308], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.707] [puff::index::jointLog] [warning] Entry with header [rna9309], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.721] [puff::index::jointLog] [warning] Entry with header [NR_029982.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.721] [puff::index::jointLog] [warning] Entry with header [rna9539], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.721] [puff::index::jointLog] [warning] Entry with header [NR_029978.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.721] [puff::index::jointLog] [warning] Entry with header [rna9541], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.723] [puff::index::jointLog] [warning] Entry with header [NR_030075.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.723] [puff::index::jointLog] [warning] Entry with header [rna9574], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.723] [puff::index::jointLog] [warning] Entry with header [rna9575], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.739] [puff::index::jointLog] [warning] Entry with header [NR_037198.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.739] [puff::index::jointLog] [warning] Entry with header [rna9722], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_039293.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9955], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_045220.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9957], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034256.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9959], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9960], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_039280.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9962], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034211.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9964], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_045253.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9966], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034231.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9968], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_045238.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9970], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034261.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9972], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034241.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9974], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034213.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9976], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_039081.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9978], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034232.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9980], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_045239.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9982], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034257.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9984], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034242.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9986], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_045240.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9988], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034262.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9990], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034245.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9992], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034260.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9994], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034234.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9996], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_045241.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna9998], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034263.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna10000], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034251.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna10002], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034254.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna10004], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_039281.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna10006], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034219.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna10008], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034258.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna10010], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_045248.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna10012], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna10013], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [NR_034220.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.759] [puff::index::jointLog] [warning] Entry with header [rna10015], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034264.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10017], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034252.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10019], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034221.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10021], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_045252.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10023], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034236.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10025], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034222.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10027], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034265.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10029], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_045250.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10031], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_039283.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10033], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034223.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10035], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034266.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10037], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034253.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10039], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034224.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10041], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_039318.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10043], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034267.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10045], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034243.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10047], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034225.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10049], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034255.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10051], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034239.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10053], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_039273.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10055], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034259.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10057], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034244.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10059], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_039274.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10061], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [NR_034268.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.760] [puff::index::jointLog] [warning] Entry with header [rna10063], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.838] [puff::index::jointLog] [warning] Entry with header [NR_030521.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.838] [puff::index::jointLog] [warning] Entry with header [rna16941], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.869] [puff::index::jointLog] [warning] Entry with header [NR_029931.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.869] [puff::index::jointLog] [warning] Entry with header [rna17752], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.869] [puff::index::jointLog] [warning] Entry with header [rna17753], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.871] [puff::index::jointLog] [warning] Entry with header [NR_039163.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.871] [puff::index::jointLog] [warning] Entry with header [rna17780], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.873] [puff::index::jointLog] [warning] Entry with header [NR_030090.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.873] [puff::index::jointLog] [warning] Entry with header [rna17819], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.873] [puff::index::jointLog] [warning] Entry with header [rna17820], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.887] [puff::index::jointLog] [warning] Entry with header [NR_034191.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.887] [puff::index::jointLog] [warning] Entry with header [rna18084], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.887] [puff::index::jointLog] [warning] Entry with header [rna18085], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.891] [puff::index::jointLog] [warning] Entry with header [NR_030079.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.891] [puff::index::jointLog] [warning] Entry with header [rna18107], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.891] [puff::index::jointLog] [warning] Entry with header [rna18108], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.891] [puff::index::jointLog] [warning] Entry with header [NR_030126.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.891] [puff::index::jointLog] [warning] Entry with header [rna18110], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.891] [puff::index::jointLog] [warning] Entry with header [rna18111], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.891] [puff::index::jointLog] [warning] Entry with header [NR_030135.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.891] [puff::index::jointLog] [warning] Entry with header [rna18113], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.891] [puff::index::jointLog] [warning] Entry with header [NR_030077.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.891] [puff::index::jointLog] [warning] Entry with header [rna18115], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.920] [puff::index::jointLog] [warning] Entry with header [NR_029943.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.920] [puff::index::jointLog] [warning] Entry with header [rna18431], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.931] [puff::index::jointLog] [warning] Entry with header [NR_105071.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.931] [puff::index::jointLog] [warning] Entry with header [rna18622], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.938] [puff::index::jointLog] [warning] Entry with header [NR_029934.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.938] [puff::index::jointLog] [warning] Entry with header [rna18728], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.938] [puff::index::jointLog] [warning] Entry with header [rna18729], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.954] [puff::index::jointLog] [warning] Entry with header [NR_030053.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.954] [puff::index::jointLog] [warning] Entry with header [rna18949], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.954] [puff::index::jointLog] [warning] Entry with header [rna18950], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.954] [puff::index::jointLog] [warning] Entry with header [NR_029979.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.954] [puff::index::jointLog] [warning] Entry with header [rna18952], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.954] [puff::index::jointLog] [warning] Entry with header [NR_030068.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.954] [puff::index::jointLog] [warning] Entry with header [rna18954], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:33.954] [puff::index::jointLog] [warning] Entry with header [rna18955], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.004] [puff::index::jointLog] [warning] Entry with header [NR_029972.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.004] [puff::index::jointLog] [warning] Entry with header [rna19616], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.004] [puff::index::jointLog] [warning] Entry with header [NR_030092.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.004] [puff::index::jointLog] [warning] Entry with header [rna19618], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.004] [puff::index::jointLog] [warning] Entry with header [rna19619], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.019] [puff::index::jointLog] [warning] Entry with header [NR_029998.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.019] [puff::index::jointLog] [warning] Entry with header [rna19983], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.019] [puff::index::jointLog] [warning] Entry with header [rna19984], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.036] [puff::index::jointLog] [warning] Entry with header [NR_029919.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.036] [puff::index::jointLog] [warning] Entry with header [rna20225], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.044] [puff::index::jointLog] [warning] Entry with header [NR_030511.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.044] [puff::index::jointLog] [warning] Entry with header [rna20343], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.044] [puff::index::jointLog] [warning] Entry with header [rna20344], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.044] [puff::index::jointLog] [warning] Entry with header [NR_030400.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.044] [puff::index::jointLog] [warning] Entry with header [rna20346], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.059] [puff::index::jointLog] [warning] Entry with header [rna20595], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.060] [puff::index::jointLog] [warning] Entry with header [NR_030136.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.060] [puff::index::jointLog] [warning] Entry with header [rna20605], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.060] [puff::index::jointLog] [warning] Entry with header [rna20606], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.073] [puff::index::jointLog] [warning] Entry with header [NR_039379.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.073] [puff::index::jointLog] [warning] Entry with header [rna20780], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.073] [puff::index::jointLog] [warning] Entry with header [rna20781], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.117] [puff::index::jointLog] [warning] Entry with header [NR_030002.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.117] [puff::index::jointLog] [warning] Entry with header [rna21436], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.117] [puff::index::jointLog] [warning] Entry with header [rna21437], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.129] [puff::index::jointLog] [warning] Entry with header [NR_030132.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.129] [puff::index::jointLog] [warning] Entry with header [rna21583], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.130] [puff::index::jointLog] [warning] Entry with header [NR_030096.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.130] [puff::index::jointLog] [warning] Entry with header [rna21592], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.130] [puff::index::jointLog] [warning] Entry with header [rna21593], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.149] [puff::index::jointLog] [warning] Entry with header [NR_034209.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.149] [puff::index::jointLog] [warning] Entry with header [rna21755], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.149] [puff::index::jointLog] [warning] Entry with header [NR_039219.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.149] [puff::index::jointLog] [warning] Entry with header [rna21757], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.149] [puff::index::jointLog] [warning] Entry with header [rna21758], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.199] [puff::index::jointLog] [warning] Entry with header [NR_030054.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.199] [puff::index::jointLog] [warning] Entry with header [rna22240], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.232] [puff::index::jointLog] [warning] Entry with header [NR_030649.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.232] [puff::index::jointLog] [warning] Entry with header [rna22660], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.233] [puff::index::jointLog] [warning] Entry with header [NR_030089.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.233] [puff::index::jointLog] [warning] Entry with header [rna22662], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.233] [puff::index::jointLog] [warning] Entry with header [rna22663], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.233] [puff::index::jointLog] [warning] Entry with header [NR_030113.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.233] [puff::index::jointLog] [warning] Entry with header [rna22665], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.233] [puff::index::jointLog] [warning] Entry with header [rna22666], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.242] [puff::index::jointLog] [warning] Entry with header [NR_030245.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.242] [puff::index::jointLog] [warning] Entry with header [rna22755], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.255] [puff::index::jointLog] [warning] Entry with header [NR_030036.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.255] [puff::index::jointLog] [warning] Entry with header [rna22936], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.275] [puff::index::jointLog] [warning] Entry with header [NR_029981.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.275] [puff::index::jointLog] [warning] Entry with header [rna23185], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.315] [puff::index::jointLog] [warning] Entry with header [NR_045222.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.315] [puff::index::jointLog] [warning] Entry with header [rna23898], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.315] [puff::index::jointLog] [warning] Entry with header [rna23899], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.315] [puff::index::jointLog] [warning] Entry with header [NR_029921.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.315] [puff::index::jointLog] [warning] Entry with header [rna23905], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.344] [puff::index::jointLog] [warning] Entry with header [NR_030512.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.344] [puff::index::jointLog] [warning] Entry with header [rna24301], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.360] [puff::index::jointLog] [warning] Entry with header [NR_030005.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.360] [puff::index::jointLog] [warning] Entry with header [rna24486], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.360] [puff::index::jointLog] [warning] Entry with header [rna24487], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.360] [puff::index::jointLog] [warning] Entry with header [NR_030141.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.360] [puff::index::jointLog] [warning] Entry with header [rna24489], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.374] [puff::index::jointLog] [warning] Entry with header [NR_030116.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.375] [puff::index::jointLog] [warning] Entry with header [rna24666], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.375] [puff::index::jointLog] [warning] Entry with header [rna24667], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.382] [puff::index::jointLog] [warning] Entry with header [NR_030243.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.382] [puff::index::jointLog] [warning] Entry with header [rna24722], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.431] [puff::index::jointLog] [warning] Entry with header [NR_030097.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.431] [puff::index::jointLog] [warning] Entry with header [rna25230], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.431] [puff::index::jointLog] [warning] Entry with header [rna25231], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.450] [puff::index::jointLog] [warning] Entry with header [NR_030074.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.450] [puff::index::jointLog] [warning] Entry with header [rna25517], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.450] [puff::index::jointLog] [warning] Entry with header [rna25518], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.513] [puff::index::jointLog] [warning] Entry with header [NR_034276.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.513] [puff::index::jointLog] [warning] Entry with header [rna26223], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.515] [puff::index::jointLog] [warning] Entry with header [NR_029994.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.515] [puff::index::jointLog] [warning] Entry with header [rna26286], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.538] [puff::index::jointLog] [warning] Entry with header [NR_030071.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.538] [puff::index::jointLog] [warning] Entry with header [rna26692], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.538] [puff::index::jointLog] [warning] Entry with header [rna26693], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.579] [puff::index::jointLog] [warning] Entry with header [NR_030064.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.579] [puff::index::jointLog] [warning] Entry with header [rna27259], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.579] [puff::index::jointLog] [warning] Entry with header [rna27260], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.589] [puff::index::jointLog] [warning] Entry with header [NR_030246.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.589] [puff::index::jointLog] [warning] Entry with header [rna27474], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.589] [puff::index::jointLog] [warning] Entry with header [rna27475], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.590] [puff::index::jointLog] [warning] Entry with header [NR_030103.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.590] [puff::index::jointLog] [warning] Entry with header [rna27485], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.590] [puff::index::jointLog] [warning] Entry with header [NR_030513.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.590] [puff::index::jointLog] [warning] Entry with header [rna27487], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.600] [puff::index::jointLog] [warning] Entry with header [NR_030026.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.600] [puff::index::jointLog] [warning] Entry with header [rna27788], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.600] [puff::index::jointLog] [warning] Entry with header [NR_030033.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.600] [puff::index::jointLog] [warning] Entry with header [rna27790], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.600] [puff::index::jointLog] [warning] Entry with header [rna27791], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.649] [puff::index::jointLog] [warning] Entry with header [NR_039336.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.649] [puff::index::jointLog] [warning] Entry with header [rna28686], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.650] [puff::index::jointLog] [warning] Entry with header [rna28687], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.650] [puff::index::jointLog] [warning] Entry with header [NR_045219.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.650] [puff::index::jointLog] [warning] Entry with header [rna28689], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.650] [puff::index::jointLog] [warning] Entry with header [rna28690], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.663] [puff::index::jointLog] [warning] Entry with header [NR_030093.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.663] [puff::index::jointLog] [warning] Entry with header [rna28892], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.663] [puff::index::jointLog] [warning] Entry with header [NR_029923.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.663] [puff::index::jointLog] [warning] Entry with header [rna28902], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.663] [puff::index::jointLog] [warning] Entry with header [rna28903], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.676] [puff::index::jointLog] [warning] Entry with header [NR_030098.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.676] [puff::index::jointLog] [warning] Entry with header [rna29072], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.676] [puff::index::jointLog] [warning] Entry with header [rna29073], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.682] [puff::index::jointLog] [warning] Entry with header [NR_030651.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.682] [puff::index::jointLog] [warning] Entry with header [rna29176], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.682] [puff::index::jointLog] [warning] Entry with header [rna29177], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.682] [puff::index::jointLog] [warning] Entry with header [NR_030133.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.682] [puff::index::jointLog] [warning] Entry with header [rna29181], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.743] [puff::index::jointLog] [warning] Entry with header [NR_030008.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.743] [puff::index::jointLog] [warning] Entry with header [rna29926], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.743] [puff::index::jointLog] [warning] Entry with header [rna29927], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.744] [puff::index::jointLog] [warning] Entry with header [NR_030004.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.744] [puff::index::jointLog] [warning] Entry with header [rna29929], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.795] [puff::index::jointLog] [warning] Entry with header [NR_039077.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.795] [puff::index::jointLog] [warning] Entry with header [rna30222], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.795] [puff::index::jointLog] [warning] Entry with header [rna30223], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.795] [puff::index::jointLog] [warning] Entry with header [NR_039078.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.795] [puff::index::jointLog] [warning] Entry with header [rna30225], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.795] [puff::index::jointLog] [warning] Entry with header [rna30226], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.831] [puff::index::jointLog] [warning] Entry with header [NR_030514.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.843] [puff::index::jointLog] [warning] Entry with header [rna30500], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.843] [puff::index::jointLog] [warning] Entry with header [NR_030747.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.843] [puff::index::jointLog] [warning] Entry with header [rna30504], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.843] [puff::index::jointLog] [warning] Entry with header [rna30505], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.893] [puff::index::jointLog] [warning] Entry with header [NR_030046.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.893] [puff::index::jointLog] [warning] Entry with header [rna30803], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.893] [puff::index::jointLog] [warning] Entry with header [rna30804], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.893] [puff::index::jointLog] [warning] Entry with header [NR_030013.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.893] [puff::index::jointLog] [warning] Entry with header [rna30806], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.893] [puff::index::jointLog] [warning] Entry with header [rna30807], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.893] [puff::index::jointLog] [warning] Entry with header [NR_039116.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.893] [puff::index::jointLog] [warning] Entry with header [rna30809], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.895] [puff::index::jointLog] [warning] Entry with header [rna30810], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.907] [puff::index::jointLog] [warning] Entry with header [NR_030504.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.919] [puff::index::jointLog] [warning] Entry with header [rna64001], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.919] [puff::index::jointLog] [warning] Entry with header [rna64002], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.946] [puff::index::jointLog] [warning] Entry with header [NR_039380.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:34.946] [puff::index::jointLog] [warning] Entry with header [rna63174], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping)
[2023-03-28 15:08:57.484] [puff::index::jointLog] [warning] Removed 5941 transcripts that were sequence duplicates of indexed transcripts.
[2023-03-28 15:08:57.484] [puff::index::jointLog] [warning] If you wish to retain duplicate transcripts, please use the `--keepDuplicates` flag
[2023-03-28 15:08:57.494] [puff::index::jointLog] [info] Replaced 4693116 non-ATCG nucleotides
[2023-03-28 15:08:57.494] [puff::index::jointLog] [info] Clipped poly-A tails from 748 transcripts
[2023-03-28 15:08:59.805] [puff::index::jointLog] [info] Filter size not provided; estimating from number of distinct k-mers
[2023-03-28 15:09:11.045] [puff::index::jointLog] [info] ntHll estimated 1076584897 distinct k-mers, setting filter size to 2^35
[2023-03-28 16:17:35.269] [puff::index::jointLog] [info] Starting the Pufferfish indexing by reading the GFA binary file.
[2023-03-28 16:17:35.270] [puff::index::jointLog] [info] Setting the index/BinaryGfa directory SalmonIndex
[2023-03-28 16:17:38.716] [puff::index::jointLog] [info] Done wrapping the rank vector with a rank9sel structure.
[2023-03-28 16:17:39.182] [puff::index::jointLog] [info] contig count for validation: 24981306
[2023-03-28 16:17:51.441] [puff::index::jointLog] [info] Total # of Contigs : 24981306
[2023-03-28 16:17:51.441] [puff::index::jointLog] [info] Total # of numerical Contigs : 24981306
[2023-03-28 16:17:52.665] [puff::index::jointLog] [info] Total # of contig vec entries: 214901235
[2023-03-28 16:17:52.665] [puff::index::jointLog] [info] bits per offset entry 28
[2023-03-28 16:18:03.766] [puff::index::jointLog] [info] Done constructing the contig vector. 24981307
[2023-03-28 16:18:17.554] [puff::index::jointLog] [info] # segments = 24981306
[2023-03-28 16:18:17.554] [puff::index::jointLog] [info] total length = 1833008257
[2023-03-28 16:18:17.731] [puff::index::jointLog] [info] Reading the reference files ...
[2023-03-28 16:18:24.616] [puff::index::jointLog] [info] positional integer width = 31
[2023-03-28 16:18:24.616] [puff::index::jointLog] [info] seqSize = 1833008257
[2023-03-28 16:18:24.616] [puff::index::jointLog] [info] rankSize = 1833008257
[2023-03-28 16:18:24.616] [puff::index::jointLog] [info] edgeVecSize = 0
[2023-03-28 16:18:24.616] [puff::index::jointLog] [info] num keys = 1083569077
[2023-03-28 16:22:02.473] [puff::index::jointLog] [info] mphf size = 676.845 MB
[2023-03-28 16:22:04.391] [puff::index::jointLog] [info] chunk size = 1833008257
[2023-03-28 16:22:04.393] [puff::index::jointLog] [info] chunk 0 = [0, 1833008227)
[2023-03-28 16:27:37.110] [puff::index::jointLog] [info] finished populating pos vector
[2023-03-28 16:27:37.110] [puff::index::jointLog] [info] writing index components
[2023-03-28 16:27:45.186] [puff::index::jointLog] [info] finished writing dense pufferfish index